BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit
epsilon [Candidatus Liberibacter asiaticus str. psy62]
         (245 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040495|gb|ACT57291.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 245

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 245/245 (100%), Positives = 245/245 (100%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL
Sbjct: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP
Sbjct: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ
Sbjct: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY
Sbjct: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240

Query: 241 ISSNQ 245
           ISSNQ
Sbjct: 241 ISSNQ 245


>gi|315122041|ref|YP_004062530.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495443|gb|ADR52042.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 244

 Score =  187 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 199/244 (81%), Positives = 222/244 (90%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + KNKMRKI+FDIETTGLD KNDRIIEIGAVELLDYSKT RTFQVFL P+G+K +PEALK
Sbjct: 1   MLKNKMRKIIFDIETTGLDKKNDRIIEIGAVELLDYSKTGRTFQVFLSPDGKKVNPEALK 60

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           LHGITDEFL+DKP FS+IF EFWDFFN++NAEWIAHNAKFDVGFINAELQRINKDPLDPS
Sbjct: 61  LHGITDEFLRDKPFFSAIFPEFWDFFNDKNAEWIAHNAKFDVGFINAELQRINKDPLDPS 120

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           RI+DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL+DVY++MMVGGSQI
Sbjct: 121 RIVDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLADVYVQMMVGGSQI 180

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
           +FGFK NED  F +++    NIS LKR+KPL  RIT+EE+ EH KTIQ +GKN+IW+RY 
Sbjct: 181 DFGFKANEDFLFGKDENIAQNISFLKREKPLSLRITEEEIAEHTKTIQMIGKNSIWNRYT 240

Query: 242 SSNQ 245
           SSNQ
Sbjct: 241 SSNQ 244


>gi|237816422|ref|ZP_04595415.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A]
 gi|237788489|gb|EEP62704.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A]
          Length = 248

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 107/243 (44%), Positives = 153/243 (62%), Gaps = 4/243 (1%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + R + MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL
Sbjct: 9   LRRGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDAL 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI++E L DKP F+ I  EF +F +      +AHNA FD+GFINAEL R+++  +  
Sbjct: 69  AVHGISNEQLLDKPVFAEILDEFLEFIDGAR--LVAHNAMFDLGFINAELARLDQAEITS 126

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             I+DTL++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+++  G Q
Sbjct: 127 EHIVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIG-GKQ 185

Query: 181 INFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
              G          + +      + L  R +PL  RI+  E   H   ++ +G  A+W +
Sbjct: 186 TALGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKK 245

Query: 240 YIS 242
           Y+S
Sbjct: 246 YLS 248


>gi|225626451|ref|ZP_03784490.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo]
 gi|225618108|gb|EEH15151.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo]
          Length = 248

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 107/243 (44%), Positives = 153/243 (62%), Gaps = 4/243 (1%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + R + MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL
Sbjct: 9   LRRGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDAL 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI++E L DKP F+ I  EF +F +      +AHNA FD+GFINAEL R+++  +  
Sbjct: 69  AVHGISNEQLLDKPVFAEILDEFLEFIDGAR--LVAHNAMFDLGFINAELARLDQAEITS 126

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             I+DTL++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+++  G Q
Sbjct: 127 EHIVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIG-GKQ 185

Query: 181 INFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
              G          + +      + L  R +PL  RI+  E   H   ++ +G  A+W +
Sbjct: 186 TALGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKK 245

Query: 240 YIS 242
           Y+S
Sbjct: 246 YLS 248


>gi|126730109|ref|ZP_01745921.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37]
 gi|126709489|gb|EBA08543.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37]
          Length = 229

 Score =  170 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 102/234 (43%), Positives = 144/234 (61%), Gaps = 7/234 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + +  DRI+EIGAVEL ++  T  T+  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGFEPEQGDRIVEIGAVELFNHVPTGETYHQYINPE-RSMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I  EF  F  +  ++ + HNA FDV F+NAEL+  N+  L     ID
Sbjct: 60  GDDFLRDKPVFAKIVDEFRTFIGD--SKLVIHNAAFDVKFLNAELRWANRPTLAKDCAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IARRK P S   L++LC+R+GI  S R+ HGALLDS +L++VY++++  G Q +FG 
Sbjct: 118 TLDIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLELIG-GKQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            +  +     E  TV N     R  PL +R+T  E   H   ++ LG+NAIW+R
Sbjct: 177 TSASNTPSVGE--TVTNWRPKPRSTPLPSRLTDTEKAAHAAFVEKLGENAIWNR 228


>gi|17988339|ref|NP_540973.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           16M]
 gi|17984115|gb|AAL53237.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str.
           16M]
          Length = 248

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 107/243 (44%), Positives = 153/243 (62%), Gaps = 4/243 (1%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + R + MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL
Sbjct: 9   LRRGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDAL 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI++E L DKP F+ I  EF +F +      +AHNA FD+GFINAEL R+++  +  
Sbjct: 69  AVHGISNEQLLDKPVFAEILDEFLEFIDGAR--LVAHNAMFDLGFINAELARLDQAEITS 126

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             I+DTL++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+++  G Q
Sbjct: 127 EHIVDTLALARRKHPIGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIG-GKQ 185

Query: 181 INFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
              G          + +      + L  R +PL  RI+  E   H   ++ +G  A+W +
Sbjct: 186 TALGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKK 245

Query: 240 YIS 242
           Y+S
Sbjct: 246 YLS 248


>gi|23502919|ref|NP_699046.1| DNA polymerase III subunit epsilon [Brucella suis 1330]
 gi|62290915|ref|YP_222708.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str.
           9-941]
 gi|82700826|ref|YP_415400.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar
           Abortus 2308]
 gi|148559666|ref|YP_001259876.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840]
 gi|161619985|ref|YP_001593872.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365]
 gi|163844089|ref|YP_001628493.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445]
 gi|189025128|ref|YP_001935896.1| DNA polymerase III subunit epsilon [Brucella abortus S19]
 gi|254690204|ref|ZP_05153458.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|254694694|ref|ZP_05156522.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|254696321|ref|ZP_05158149.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700703|ref|ZP_05162531.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|254705074|ref|ZP_05166902.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|254709049|ref|ZP_05170860.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|254713525|ref|ZP_05175336.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|254716120|ref|ZP_05177931.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|254731237|ref|ZP_05189815.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|256030574|ref|ZP_05444188.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|256060036|ref|ZP_05450218.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|256158570|ref|ZP_05456460.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|256253981|ref|ZP_05459517.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|256258458|ref|ZP_05463994.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260169479|ref|ZP_05756290.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99]
 gi|260546177|ref|ZP_05821917.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260567458|ref|ZP_05837928.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|260755744|ref|ZP_05868092.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|260758968|ref|ZP_05871316.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|260760692|ref|ZP_05873035.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884770|ref|ZP_05896384.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|261215021|ref|ZP_05929302.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|261217890|ref|ZP_05932171.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261221121|ref|ZP_05935402.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|261316547|ref|ZP_05955744.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|261321260|ref|ZP_05960457.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|261324012|ref|ZP_05963209.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261751212|ref|ZP_05994921.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261755776|ref|ZP_05999485.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|261759005|ref|ZP_06002714.1| DNA polymerase III [Brucella sp. F5/99]
 gi|265987621|ref|ZP_06100178.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|265997081|ref|ZP_06109638.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|294851300|ref|ZP_06791973.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
 gi|297247299|ref|ZP_06931017.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str.
           B3196]
 gi|23348951|gb|AAN30961.1| DNA polymerase III, epsilon subunit [Brucella suis 1330]
 gi|62197047|gb|AAX75347.1| DnaQ, DNA polymerase III, epsilon subunit [Brucella abortus bv. 1
           str. 9-941]
 gi|82616927|emb|CAJ12028.1| Beta tubulin:DNA polymerase III, epsilon subunit:Exonuclease:DNA
           polymerase 3, epsilon subunit [Brucella melitensis
           biovar Abortus 2308]
 gi|148370923|gb|ABQ60902.1| DNA polymerase III, epsilon subunit [Brucella ovis ATCC 25840]
 gi|161336796|gb|ABX63101.1| DNA polymerase III, epsilon subunit [Brucella canis ATCC 23365]
 gi|163674812|gb|ABY38923.1| DNA polymerase III, epsilon subunit [Brucella suis ATCC 23445]
 gi|189020700|gb|ACD73422.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|260096284|gb|EEW80160.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260156976|gb|EEW92056.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|260669286|gb|EEX56226.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|260671124|gb|EEX57945.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675852|gb|EEX62673.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|260874298|gb|EEX81367.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260916628|gb|EEX83489.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|260919705|gb|EEX86358.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|260922979|gb|EEX89547.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261293950|gb|EEX97446.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|261295770|gb|EEX99266.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|261299992|gb|EEY03489.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261738989|gb|EEY26985.1| DNA polymerase III [Brucella sp. F5/99]
 gi|261740965|gb|EEY28891.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261745529|gb|EEY33455.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|262551549|gb|EEZ07539.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|264659818|gb|EEZ30079.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|294819889|gb|EFG36888.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
 gi|297174468|gb|EFH33815.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str.
           B3196]
          Length = 234

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 4/237 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +HGI+
Sbjct: 1   MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E L DKP F+ I  EF +F +      +AHNA FD+GFINAEL R+++  +    I+DT
Sbjct: 61  NEQLLDKPVFAEILDEFLEFIDGAR--LVAHNAMFDLGFINAELARLDQAEITSEHIVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+++  G Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIG-GKQTALGLT 177

Query: 187 TNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                   + +      + L  R +PL  RI+  E   H   ++ +G  A+W +Y+S
Sbjct: 178 MESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234


>gi|256370469|ref|YP_003107980.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
 gi|256000632|gb|ACU49031.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
          Length = 234

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 4/237 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +HGI+
Sbjct: 1   MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E L DKP F+ I  EF +F +      +AHNA FD+GFINAEL R+++  +    I+DT
Sbjct: 61  NEQLLDKPVFAEILDEFLEFIDGAR--LVAHNAMFDLGFINAELARLDQAEITSEHIVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+++  G Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIENSHRTLHGALLDAQILAEVYIELIG-GKQTALGLT 177

Query: 187 TNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                   + +      + L  R +PL  RI+  E   H   ++ +G  A+W +Y+S
Sbjct: 178 MESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234


>gi|254718114|ref|ZP_05179925.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|265983066|ref|ZP_06095801.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|306839740|ref|ZP_07472542.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653]
 gi|306842813|ref|ZP_07475453.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2]
 gi|306843489|ref|ZP_07476090.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1]
 gi|264661658|gb|EEZ31919.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|306276180|gb|EFM57880.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1]
 gi|306287007|gb|EFM58518.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2]
 gi|306405200|gb|EFM61477.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653]
          Length = 234

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 4/237 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +HGI+
Sbjct: 1   MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E L DKP F+ I  EF +F +      +AHNA FD+GFINAEL R+++  +    I+DT
Sbjct: 61  NEQLLDKPVFAEILDEFLEFIDGAR--LVAHNAMFDLGFINAELARLDQAEIASEHIVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+++  G Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIG-GKQTALGLT 177

Query: 187 TNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                   + +      + L  R +PL  RI+  E   H   ++ +G  A+W +Y+S
Sbjct: 178 MESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234


>gi|239833112|ref|ZP_04681441.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG
           3301]
 gi|239825379|gb|EEQ96947.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG
           3301]
          Length = 233

 Score =  168 bits (426), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 111/236 (47%), Positives = 151/236 (63%), Gaps = 3/236 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  ++ P GR+   EAL +HGI+
Sbjct: 1   MREIVFDTETTGLERLEDRVIEIGGVELINKFPTGRTFHKYINPQGRQVHAEALAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E L DKP+F+ I  EF +FF+   A+ +AHNA FD+GFINAEL R+ +  +   R++DT
Sbjct: 61  NEQLLDKPTFAEILDEFLEFFDG--AKLVAHNAMFDLGFINAELARLGQAEIQVERVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LCKRYGI   HR+ HGALLDS +L++VYI+++  G Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIENGHRTLHGALLDSEILAEVYIELIG-GKQTALGLS 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                       +   I L  R +PL  RI+ EE   H   +  LG  AIW +Y+S
Sbjct: 178 IGGTASGSNAGDSGAAIILAARPRPLAPRISDEERAAHAALVAGLGDKAIWKKYLS 233


>gi|225853502|ref|YP_002733735.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457]
 gi|256045675|ref|ZP_05448553.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256263016|ref|ZP_05465548.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|260562976|ref|ZP_05833462.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|265992096|ref|ZP_06104653.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|225641867|gb|ACO01781.1| DNA polymerase III, epsilon subunit [Brucella melitensis ATCC
           23457]
 gi|260152992|gb|EEW88084.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|263003162|gb|EEZ15455.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092889|gb|EEZ17064.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|326410068|gb|ADZ67133.1| DNA polymerase III subunit epsilon [Brucella melitensis M28]
 gi|326539784|gb|ADZ87999.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90]
          Length = 234

 Score =  168 bits (425), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 4/237 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +HGI+
Sbjct: 1   MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E L DKP F+ I  EF +F +      +AHNA FD+GFINAEL R+++  +    I+DT
Sbjct: 61  NEQLLDKPVFAEILDEFLEFIDGAR--LVAHNAMFDLGFINAELARLDQAEITSEHIVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+++  G Q   G  
Sbjct: 119 LALARRKHPIGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIG-GKQTALGLT 177

Query: 187 TNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                   + +      + L  R +PL  RI+  E   H   ++ +G  A+W +Y+S
Sbjct: 178 MESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234


>gi|153008185|ref|YP_001369400.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC
           49188]
 gi|151560073|gb|ABS13571.1| DNA polymerase III, epsilon subunit [Ochrobactrum anthropi ATCC
           49188]
          Length = 231

 Score =  168 bits (425), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 111/234 (47%), Positives = 150/234 (64%), Gaps = 3/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  ++ P GR+  PEAL +HGI+
Sbjct: 1   MREIVFDTETTGLERLEDRVIEIGGVELINKFPTGRTFHKYINPQGRQVHPEALAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E L DKP+F+ +  EF +FF+   A+ +AHNA FD+GFINAEL R+ +  +   RIIDT
Sbjct: 61  NEQLLDKPTFAEVLDEFLEFFDG--AKLVAHNAMFDLGFINAELARLGQAEIQSERIIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LCKRYGI   HR+ HGALLDS +L++VYI+++  G Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIENGHRTLHGALLDSEILAEVYIELIG-GKQTALGLS 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
                      ++   I L  R +PL  RI+  E   H   +  LG  AIW +Y
Sbjct: 178 MGGAVSGNNAGESGAAIVLAARPRPLAPRISDAERAAHAALVDKLGDKAIWKKY 231


>gi|84684641|ref|ZP_01012542.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Maritimibacter alkaliphilus HTCC2654]
 gi|84667620|gb|EAQ14089.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Rhodobacterales bacterium HTCC2654]
          Length = 230

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 93/234 (39%), Positives = 140/234 (59%), Gaps = 7/234 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D K  DR++EIGAVEL ++  T RT+  ++ P  R     A  +HG+
Sbjct: 1   MREIVLDTETTGFDPKTGDRMVEIGAVELFNHMPTGRTYHQYINPQ-RDMPEGAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++EFLKD P F+ I   F +F  +  A+ + HNA FDV F+NAEL    +  +   + ID
Sbjct: 60  SEEFLKDYPVFADIADAFLEFIGD--AKLVIHNASFDVPFLNAELGWCKRRQIPMDQSID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IAR+K P + N L++LC+R+GI  SHR+ HGALLDS +L++VY++++  G Q +   
Sbjct: 118 TLLIARKKFPGAGNSLDALCRRFGIDNSHRTLHGALLDSEILAEVYLELIG-GRQPDLVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                +    +     +     R + L +RIT+EE   H   ++ LG +A+W +
Sbjct: 177 GGGGSQT--SDTTQNEDWRPRPRPEALPSRITEEERAAHQAFVEKLGASALWSK 228


>gi|83942021|ref|ZP_00954483.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36]
 gi|83847841|gb|EAP85716.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36]
          Length = 228

 Score =  167 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 96/233 (41%), Positives = 148/233 (63%), Gaps = 8/233 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL+ +  T  T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGNTYHQYINPE-RSMPAEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I  +F DF  +  ++ + HNA FD+ F+NAEL+ +    +   + +D
Sbjct: 60  GDDFLRDKPKFAQIGQDFLDFIGD--SKLVIHNAAFDIKFLNAELKWMGLPQIPWEQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR++ P S   L++LC+R+GI  + R+ HGALLDS +L+DVY++++  G Q +FG 
Sbjct: 118 TLAIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILADVYLELIG-GRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
            T   +  K+E  T P+ +   R  PL +RIT +E   H + +  LG +A+W 
Sbjct: 177 ST---KPEKKEGDTTPDWTPKPRPTPLPSRITPQEAAAHTEFVDKLGDSAVWK 226


>gi|83953070|ref|ZP_00961792.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1]
 gi|83842038|gb|EAP81206.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1]
          Length = 228

 Score =  167 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 97/233 (41%), Positives = 148/233 (63%), Gaps = 8/233 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL+ +  T  T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGNTYHQYINPE-RSMPAEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL+DKP F+ I  +F DF  +  ++ + HNA FD+ F+NAEL+ +    +   + +D
Sbjct: 60  GDEFLRDKPKFAQIGQDFLDFIGD--SKLVIHNAAFDIKFLNAELKWMGLPQIPWEQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR++ P S   L++LC+R+GI  + R+ HGALLDS +L+DVY++++  G Q +FG 
Sbjct: 118 TLAIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILADVYLELIG-GRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
            T   +  K+E  T P+ +   R  PL +RIT +E   H + +  LG +A+W 
Sbjct: 177 ST---KPEKKEGDTTPDWTPKPRPTPLPSRITPQEAAAHTEFVDKLGDSAVWK 226


>gi|83950782|ref|ZP_00959515.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius nubinhibens ISM]
 gi|83838681|gb|EAP77977.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius nubinhibens ISM]
          Length = 231

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 97/235 (41%), Positives = 139/235 (59%), Gaps = 7/235 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVEL ++  T  T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPHSGDRIVEIGAVELFNHMPTGETYHQYINPE-RSMPQEAFQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F  I   F DF  +  A+ I HNA FD+ F+NAEL  +    +   + ID
Sbjct: 60  GDDFLRDKPVFKRIGQAFLDFIGD--AKLIIHNAAFDMKFLNAELGWMGLPQIPWEQAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IARR+ P S   L++LC+R+ I  S R+ HGALLDS +L++VY++++  G Q +F  
Sbjct: 118 TLEIARRRFPGSPASLDALCRRFNIDNSSRTLHGALLDSEILAEVYLELIG-GRQPDFSL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           K  E     E  + + N     R  PL +R+T+ E + H   +  +G  AIW +Y
Sbjct: 177 KVVEKAP--EPGEDMGNWRPKPRPTPLPSRLTEAEKNAHATFVGGMGDTAIWRKY 229


>gi|49473693|ref|YP_031735.1| DNA polymerase III epsilon chain [Bartonella quintana str.
           Toulouse]
 gi|49239196|emb|CAF25512.1| DNA polymerase III epsilon chain [Bartonella quintana str.
           Toulouse]
          Length = 235

 Score =  165 bits (416), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 102/232 (43%), Positives = 148/232 (63%), Gaps = 3/232 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD + DRIIEIG VE++D   T + F V+L P G   S EA+ +HG+T
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIGCVEMIDRYLTGKRFHVYLNPQGVVISDEAVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LK++ SFS I  E  +F +       AHNA FD+GF+NAEL R+NK  +    I+DT
Sbjct: 61  NERLKNEKSFSDIADELLEFISGATMV--AHNASFDIGFLNAELGRVNKPLISVDNILDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRK P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+++  G Q   GF+
Sbjct: 119 LAMARRKFPMGPNSLDVLCKRFGIDNSHRVFHGALLDAEILADVYIELIG-GKQGVLGFE 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
            ++      +      +++  R +PL  R++ +E   H   I+ +G+ A+W+
Sbjct: 178 NSKSVEQDSQNDKNALLAVKVRPQPLSPRLSAQEKIMHADFIKKIGEKALWN 229


>gi|15963758|ref|NP_384111.1| DNA polymerase III subunit epsilon [Sinorhizobium meliloti 1021]
 gi|307302561|ref|ZP_07582318.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C]
 gi|307316108|ref|ZP_07595552.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83]
 gi|15072933|emb|CAC41392.1| Probable DNA polymerase III, epsilon chain [Sinorhizobium meliloti
           1021]
 gi|306897948|gb|EFN28690.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83]
 gi|306903231|gb|EFN33821.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C]
          Length = 242

 Score =  165 bits (416), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 113/239 (47%), Positives = 157/239 (65%), Gaps = 4/239 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DR+IEIG +EL +   T RT  +++ P  RK  PEAL +HGIT
Sbjct: 1   MREIIFDTETTGLDNREDRVIEIGGIELENQFPTGRTIHIYINPGERKVHPEALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDKP F+ +  E  DFF +      AHNA FD+GFINAE +R+   P+   R+IDT
Sbjct: 61  DEFLKDKPPFADVAQEIVDFFGDARWV--AHNATFDIGFINAEFERLGLPPIGSDRVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LC+RYG+  SHR++HGALLDS LL++VYI+M+  G Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCRRYGVDNSHRTRHGALLDSELLAEVYIEMIG-GRQAALGLV 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245
             E      E    P + ++ R++PL  R+T+ E+  H   +  +G NAIW +Y  ++ 
Sbjct: 178 VTEAGDRPIEADDGP-VVVVTRERPLRPRLTEAEIAAHAALVAKIGANAIWSKYSEADD 235


>gi|163745117|ref|ZP_02152477.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45]
 gi|161381935|gb|EDQ06344.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45]
          Length = 229

 Score =  164 bits (415), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 91/234 (38%), Positives = 140/234 (59%), Gaps = 8/234 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL+++  T  T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMNHMATGETYHQYINPE-RGMPEEAFQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I   F DF     ++ I HNA FD+ F+NAEL+ +    +   + +D
Sbjct: 60  GDDFLRDKPKFAQIGKSFLDFIGT--SKLIIHNAAFDIKFLNAELRWMGLPQIPWEQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IAR++ P S   L++LC+R+GI  + R+ HGALLDS +L++VY++++  G Q +F  
Sbjct: 118 TLEIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILAEVYLELIG-GRQPDFAL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            +  +R   E        +   R  PL +R+T+ E   H   I  LG + +W +
Sbjct: 177 SSAPERKSGEPDT---RWTPKARPNPLPSRLTEAEAAAHADFIGKLGDDVLWKQ 227


>gi|114762190|ref|ZP_01441658.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Pelagibaca bermudensis HTCC2601]
 gi|114545214|gb|EAU48217.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Roseovarius sp. HTCC2601]
          Length = 229

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 97/234 (41%), Positives = 139/234 (59%), Gaps = 7/234 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + +  DRI+EIGAVEL ++  T  T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFEPETGDRIVEIGAVELYNHVPTGETYHQYINPE-RSMPQEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I  EF +F  +  ++ + HNA FDV F+NAEL    +  L     +D
Sbjct: 60  GDDFLRDKPLFAQIVDEFLEFIGD--SKLVIHNATFDVKFLNAELGWSKRPLLPKDCAVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IARRK P S   L++LC+R+GI  S R+ HGALLDS +L+DVY++++  G Q +   
Sbjct: 118 TLAIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILADVYLELIG-GKQPDLVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                R          N    +R +PL  RIT EE   H   ++ LG+ A+W R
Sbjct: 177 SPV--RQGGGSDGGDDNWRPQRRPEPLSPRITDEEKAAHAAFVEKLGEAALWSR 228


>gi|89052685|ref|YP_508136.1| DNA polymerase III, epsilon subunit [Jannaschia sp. CCS1]
 gi|88862234|gb|ABD53111.1| DNA polymerase III epsilon subunit [Jannaschia sp. CCS1]
          Length = 231

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 91/237 (38%), Positives = 135/237 (56%), Gaps = 10/237 (4%)

Query: 7   MRKIVFDIETTGLDSK---NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           MR+IV D ETTGL+       RI+EIGAVE+ +   T +T+  ++ P  R    EA  +H
Sbjct: 1   MREIVLDTETTGLNPYDMPRHRIVEIGAVEIFNQVPTGKTYHQYIQPE-RDMPKEAFDVH 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI ++FL DKP F+ I  +F DF          HNA+FD+ F+NAEL+   K  L   + 
Sbjct: 60  GIGEDFLADKPIFADIAQDFLDFVGGDQMV--IHNAEFDMRFLNAELEWAGKHALPNDQA 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL IAR+K P S   L++LC+R+GI  S R KHGALLDS +L++VY+++   G Q +F
Sbjct: 118 LDTLKIARQKFPGSPASLDALCRRFGIDNSAREKHGALLDSEILAEVYLELTG-GKQPDF 176

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           G   ++    +++ +   N     R   L TR++  E   H   +  LG   +W ++
Sbjct: 177 GLSQSKSTPTQQQDE---NWRPRPRPSALPTRLSDVEKAAHAAFVDALGDQTVWSKF 230


>gi|260467189|ref|ZP_05813366.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259029042|gb|EEW30341.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 241

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 101/238 (42%), Positives = 144/238 (60%), Gaps = 3/238 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLDS++DR+IE+G VEL++   T RTF  ++ P GR    EA  +HGI+
Sbjct: 1   MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHAEAQAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L  KP+F+ I  E+        A+ +AHNA FD+GF+N E  R+    +DP  ++DT
Sbjct: 61  AADLAGKPTFAEIVEEWLA--FTDGAKLVAHNATFDIGFLNVEFGRLGHPVIDPGLVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LC+RYGI  + R+KHGALLDS LL++VYI+++  G Q      
Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNAKRTKHGALLDSELLAEVYIELIG-GKQAALILD 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
           +      + E      I    R  PL  R+T+ E   H   + TLG+ A+W +  SS 
Sbjct: 178 SATAPAQRGENVRHIEIIAAVRPGPLLPRLTEAERAAHAAMVATLGEKALWLKATSSE 235


>gi|260429270|ref|ZP_05783247.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
 gi|260419893|gb|EEX13146.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
          Length = 230

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 94/234 (40%), Positives = 142/234 (60%), Gaps = 6/234 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + +  DRI+EIGAVEL ++  T +T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFEPETGDRIVEIGAVELYNHVPTGKTYHQYINPE-RSMPNEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I  +F +F  +  A+ + HNA FDV F+NAEL+   +  L     ID
Sbjct: 60  GDDFLRDKPLFAQIVDDFLEFIGD--AKLVIHNAAFDVKFLNAELRWSKRPQLPRDCAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IARRK P S   L++LC+R+GI  S R+ HGALLDS +L+DVY++++  G Q +   
Sbjct: 118 TLEIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILADVYLELIG-GKQPDLVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                +    +  +  +    +R   L +R+++EE   H   ++ LG NA+W R
Sbjct: 177 TPAGQKS-GADSASAGDWRPQRRAVALPSRLSEEEKAAHAAFVEKLGANALWTR 229


>gi|254485580|ref|ZP_05098785.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101]
 gi|214042449|gb|EEB83087.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101]
          Length = 228

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 92/233 (39%), Positives = 146/233 (62%), Gaps = 8/233 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL+ +  T +T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHMATGKTYHQYINPE-RGMPDEAFQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I  +F DF  +  ++ I HNA FD+ F+NAEL+ +    +  ++ +D
Sbjct: 60  GDDFLRDKPKFAQIGQDFLDFIGD--SKLIIHNAAFDIKFLNAELKWMGLPQIPWAQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR++ P S   L++LC+R+ I  + R+ HGALLDS +L++VY++++  G Q +FG 
Sbjct: 118 TLAIARKRFPGSPASLDALCRRFNIDNTSRTLHGALLDSEILAEVYLELIG-GRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
                R   +E  T  + +   R  PL +RI+++E   H + +  LG  A+W 
Sbjct: 177 SNQPQR---KEGDTSVDWTPKPRPNPLPSRISQDEAAAHAEFVSKLGDGAVWK 226


>gi|222084205|ref|YP_002542731.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
 gi|221721653|gb|ACM24809.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
          Length = 236

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 107/237 (45%), Positives = 151/237 (63%), Gaps = 6/237 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD+K DRIIEIG +EL ++  T +T  +++ P  RK  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNKADRIIEIGGIELFNHFPTGKTLHLYINPGDRKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE LKDKP F+ +  E   FF        AHNA FD+GF+NAE  R+ + P+ P  +IDT
Sbjct: 61  DESLKDKPPFADVADEILAFFEGAKWI--AHNATFDMGFVNAEFNRLGRPPILPDMVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LC+RYGI  SHR++HGALLDS LL++VYI+M+  G Q   G  
Sbjct: 119 LAMARRKHPMGPNSLDALCRRYGIDNSHRTRHGALLDSELLAEVYIEMIG-GRQTALGLG 177

Query: 187 TNEDRFFKEEKKTVPN---ISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           ++     +  +        + +L R +PL  R+++ E   H   +  LG+  IW +Y
Sbjct: 178 SSNGSSARSRQNNDVEEVVVEILARPQPLPGRVSETEEAAHAALVAKLGEKGIWSKY 234


>gi|21328725|gb|AAM48731.1| DNA polymerase III, epsilon subunit [uncultured marine
           proteobacterium]
          Length = 231

 Score =  163 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 96/234 (41%), Positives = 144/234 (61%), Gaps = 6/234 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  + DRI+EIGAVEL ++  T RT+  ++ P  R     A  +HG+
Sbjct: 1   MREIVLDTETTGFEPSEGDRIVEIGAVELFNHLPTGRTYHQYINPE-RNMPEAAFNVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++EFL DKP F +I  EF DF  +  ++ + HNA FD+ F+NAEL  +N+  L   + ID
Sbjct: 60  SEEFLSDKPIFKNIAQEFIDFIAD--SKLVIHNASFDMKFLNAELGWVNRPALPNDQTID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IARRK P S   L++LC+R+GI  S R+ HGALLDS +L++VY++++  G Q +   
Sbjct: 118 TLAIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLELVG-GRQPDLVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
              E +    +    P+     R KPL +R++ +E   H+  I  LG +A+W +
Sbjct: 177 SGPEVK-TSTDGSQSPDWRPAPRPKPLASRLSDKEKAAHETFIAALGSDALWTK 229


>gi|150398405|ref|YP_001328872.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419]
 gi|150029920|gb|ABR62037.1| DNA polymerase III, epsilon subunit [Sinorhizobium medicae WSM419]
          Length = 242

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 157/239 (65%), Gaps = 4/239 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DR+IEIG +EL +   T RT  +++ P  RK  PEAL +HGIT
Sbjct: 1   MREIIFDTETTGLDNREDRVIEIGGIELENQFPTGRTIHIYINPGDRKVHPEALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+FLKDKPSF+ I  E  DFF +      AHNA FD+GFINAE +R+   P+   R+IDT
Sbjct: 61  DDFLKDKPSFAEIAQEIVDFFGDARWV--AHNATFDMGFINAEFERLGLPPVGSDRVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRKHP   N L++LC+RYGI  SHR++HGALLDS LL++VYI+M+  G Q   G  
Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTRHGALLDSELLAEVYIEMIG-GRQAALGLV 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245
             E      E    P I ++ R++PL  R+T+ E+  H   +  +G NAIW ++  +  
Sbjct: 178 MTETGGRSLEADDGPVI-IVGRERPLRPRLTEAEIAAHAALVSKIGANAIWAKFSEAED 235


>gi|27375751|ref|NP_767280.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27348889|dbj|BAC45905.1| DNA polymerase III epsilon chain [Bradyrhizobium japonicum USDA
           110]
          Length = 239

 Score =  162 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 94/238 (39%), Positives = 134/238 (56%), Gaps = 8/238 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T +T+ V++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEMFNRMPTGQTYHVYINPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL  KP F  +   F +F  +  A  + HNA FD+ FINAEL RI +  +   +++D
Sbjct: 60  SAEFLSTKPVFHEVADAFLEFIGD--APLVIHNASFDISFINAELDRIKRAAIPREQLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VY+ ++          
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQSQLLLA 177

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
              E+        T       +R  PL  RI+  E + H   I TLG  AIW+ ++ +
Sbjct: 178 SEAEEIRINAAGDT----PRRQRPTPLAPRISDAEREAHRAFIATLGDKAIWNEFLPA 231


>gi|121602632|ref|YP_988343.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis
           KC583]
 gi|120614809|gb|ABM45410.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis
           KC583]
          Length = 234

 Score =  162 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 100/234 (42%), Positives = 142/234 (60%), Gaps = 3/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD  NDRIIEIG VE++D   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLDKDNDRIIEIGCVEMVDRYLTGRQFHVYLNPQGVIIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LK +  F  I  E  +F +       AHNA FD+ F+NAEL+R+NK  +    +IDT
Sbjct: 61  NERLKGEKKFDDIADELLEFIDGAMMI--AHNANFDISFLNAELKRVNKPLISIDNVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRK P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+++  G Q   GF 
Sbjct: 119 LAMARRKFPMGPNSLDVLCKRFGIDNSHRILHGALLDAEILADVYIELIG-GKQGTLGFY 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            +  R    E  +  +     R + L  R++++E   H   +  +GK A+W+++
Sbjct: 178 NSNGRHLNTENGSNISYVFKIRPQALPPRLSEQEKSMHADLVNQIGKKALWNQF 231


>gi|13473785|ref|NP_105353.1| DNA polymerase III subunit epsilon [Mesorhizobium loti MAFF303099]
 gi|14024536|dbj|BAB51139.1| DNA polymerase III epsilon chain [Mesorhizobium loti MAFF303099]
          Length = 240

 Score =  162 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 102/238 (42%), Positives = 149/238 (62%), Gaps = 4/238 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLDS++DR+IE+G VEL++   T RTF  ++ P GR    EA  +HGI+
Sbjct: 1   MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHEEAQAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L  KP+F+ I  E+        A+ +AHNA FD+GF+N E  R+    +DP R++DT
Sbjct: 61  AADLAGKPTFAEIAEEWLT--FTDGAKLVAHNATFDIGFLNVEFGRLGHPVVDPGRVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LC+RYGI  + R+KHGALLDS LL++VYI+++  G Q      
Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNTKRTKHGALLDSELLAEVYIELIG-GKQAALILD 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
           +       E  + +  I + +R +PL  R+T+ E   H   + TLG+ A+W +  SS 
Sbjct: 178 SATAPAQGENVRHIEII-VAERPRPLLPRLTEAERAAHAAMVATLGEKALWLKANSSE 234


>gi|209551510|ref|YP_002283427.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537266|gb|ACI57201.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 245

 Score =  161 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 116/244 (47%), Positives = 157/244 (64%), Gaps = 8/244 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T     +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNVIHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK  F+ +  E   FF +      AHNA FD+GFINAEL RI   P+ P R++DT
Sbjct: 61  DEFLKDKKPFAEVAEEILTFFGDAKWI--AHNATFDMGFINAELARIGLPPILPERVLDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+M+  G Q  FG  
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIG-GRQAAFGLS 177

Query: 187 TN-----EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
                    R    E+  V   S+L+R +PL  R+++ E   H+  +  LG+  IW +Y 
Sbjct: 178 MTATSGQNGRGDATEEDDVVIASVLERPRPLAPRLSQSEAQAHEALVAKLGEKGIWAKYA 237

Query: 242 SSNQ 245
           S +Q
Sbjct: 238 SLDQ 241


>gi|255264769|ref|ZP_05344111.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62]
 gi|255107104|gb|EET49778.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62]
          Length = 231

 Score =  161 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 96/234 (41%), Positives = 140/234 (59%), Gaps = 6/234 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  + DRI+EIGAVELL++  T RT+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFEPNEGDRIVEIGAVELLNHVPTGRTYHQYINPK-RSMPKEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I   F DF          HNA FD+ F+NAEL  +N+  L   + +D
Sbjct: 60  GDDFLRDKPFFADIAQAFVDFVGTDKMI--IHNAAFDMKFLNAELGWVNRPLLPMDQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IARR+ P S   L++LC+R+GI  S R+ HGALLDS +L++VY++++  G Q +FG 
Sbjct: 118 TLAIARRRFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLELIG-GRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            T      K    T  N     R  PL + +++EE   H   +  LG + +W +
Sbjct: 177 NTAPKEEKKFVTSTTDN-RPKSRSTPLVSLLSEEEATAHSAFVDKLGDDVLWKK 229


>gi|307943432|ref|ZP_07658776.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4]
 gi|307773062|gb|EFO32279.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4]
          Length = 239

 Score =  161 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 98/243 (40%), Positives = 148/243 (60%), Gaps = 11/243 (4%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I FD ETTGL+ +  DR++EIG VEL ++  T +++ V++ P  R    EA ++HG+
Sbjct: 1   MREISFDTETTGLNPRGGDRLVEIGGVELWNHIPTGKSYHVYINPQ-RDMPEEAFRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++EFL DK  F  +  EF DF  +     + HNA FD+GFIN EL+R  +  +   +++D
Sbjct: 60  SEEFLSDKQLFDQVADEFLDFVGDA--TLVIHNAAFDMGFINMELERSGRRIISNDQVLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP+  N L++LC RYGI  S R KHGALLD+ +L++VY++++  G Q   G 
Sbjct: 118 TLDLARRKHPTGPNSLDALCSRYGIDNSKRVKHGALLDAEILAEVYLELIG-GRQTALGL 176

Query: 186 KTNED------RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             +ED           E   + N +  +R  PL   I++ E   H   I+ +G+NAIW++
Sbjct: 177 TADEDAQTASSGGSAAEPGELGNFNAKQRPSPLTRPISEAEFAAHKAFIEGMGENAIWNK 236

Query: 240 YIS 242
           Y S
Sbjct: 237 YGS 239


>gi|110635810|ref|YP_676018.1| DNA polymerase III subunit epsilon [Mesorhizobium sp. BNC1]
 gi|110286794|gb|ABG64853.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1]
          Length = 242

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 111/238 (46%), Positives = 159/238 (66%), Gaps = 4/238 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD + DR+IE+G VEL +   T RT   F+ P GR   P+A  +HGI+
Sbjct: 1   MREIIFDTETTGLDPREDRVIELGCVELANRFPTGRTLHYFINPQGRSVHPDAQAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  L  KP F+ I  EF +F +   A+ +AHNA FD+GFINAE QR+ +  +DP+R+IDT
Sbjct: 61  DADLAGKPVFAEILDEFLEFIDG--AKLVAHNANFDIGFINAEFQRVGQPYIDPARVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L+IARRKHP   N L++LC+RYGI  SHR+KHGALLD+ LL++VYI++   G Q +FG +
Sbjct: 119 LAIARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDAELLAEVYIELAG-GKQASFGLE 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
                  +E   +V  ++L  R +PL +R+T EE   H+  +  +G+NA+W + + + 
Sbjct: 178 IATQGVAEETSSSVI-VALPPRPRPLRSRLTPEEQQAHEALVAGIGENALWRKLMPAE 234


>gi|84514924|ref|ZP_01002287.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Loktanella vestfoldensis SKA53]
 gi|84511083|gb|EAQ07537.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Loktanella vestfoldensis SKA53]
          Length = 228

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 95/234 (40%), Positives = 138/234 (58%), Gaps = 8/234 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  + DRI+EIGAVEL+ +  T RT+  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGFEPSEGDRIVEIGAVELIGHMPTGRTYHQYINPQ-RTMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL DKP F  I  +F  F  +  A+ + HNA FD+ F+NAEL  ++K  L  +R +D
Sbjct: 60  GDDFLADKPLFKDIADDFLTFIGD--AKLVIHNAAFDMKFLNAELGWLHKPALPMNRAVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IARRK P S   L++LC+R+GI  + R+ HGALLDS +L++VY++++  G Q +F  
Sbjct: 118 TLMIARRKFPGSPASLDALCRRFGIDNAARTLHGALLDSEILAEVYLELIG-GRQPDFAL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                      +K         R  PL +R+T EE   H   +  +G +A+W R
Sbjct: 177 A---QGSADSTQKNGAAWRAGPRPAPLASRLTAEETAAHTAFVNAMGDDAVWKR 227


>gi|218660611|ref|ZP_03516541.1| DNA polymerase III subunit epsilon [Rhizobium etli IE4771]
          Length = 238

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 106/238 (44%), Positives = 153/238 (64%), Gaps = 3/238 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK +F+ +  E   FF +      AHNA FD+GFINAE  RI   P+ P R++DT
Sbjct: 61  DEFLKDKKAFAEVAEEILAFFGDAKWI--AHNATFDMGFINAEFARIGLPPILPERVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGF 185
           LS+ARRK+P   N L++LC+RYG+  SHR+KHGALLDS LL++VYI+M+    + +  G 
Sbjct: 119 LSMARRKNPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMIGGRQAALGLGQ 178

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
                      +     + +L+R +PL  R+++ E   H+  +  LG+  IW ++ SS
Sbjct: 179 SGQAAGGEMAMEDDGAILEVLERPRPLAPRLSQAEAQAHEALVAKLGEKGIWSKFASS 236


>gi|149204383|ref|ZP_01881350.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035]
 gi|149142268|gb|EDM30315.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035]
          Length = 231

 Score =  160 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 93/235 (39%), Positives = 136/235 (57%), Gaps = 6/235 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + +  DRI+EIGAVEL ++  T RTF  ++ P  R     A  +HG+
Sbjct: 1   MREIVLDTETTGFEPESGDRIVEIGAVELYNHMPTGRTFHKYINPQ-RAMPEAAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I  EF DF  +     + HNA FD+ F+NAEL  +    L   + +D
Sbjct: 60  GDDFLRDKPLFAEIAQEFLDFVQDAR--LVIHNAAFDMKFLNAELGWLKLPQLPWDQAVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR+K P S   L++LC+R+ I  S R+ HGALLDS +L++VY++++  G Q +F  
Sbjct: 118 TLAIARKKFPGSPASLDALCRRFQIDNSARTLHGALLDSEILAEVYLELIG-GRQPDFVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            T           T  +     R  PL +R+T  E D H   +  +G  A+W ++
Sbjct: 177 ATGPTAKSGGSTDTA-HWRPQPRPTPLASRLTATENDAHQAFVAKMGDAALWRKF 230


>gi|227823864|ref|YP_002827837.1| DNA polymerase III subunit epsilon [Sinorhizobium fredii NGR234]
 gi|227342866|gb|ACP27084.1| DNA polymerase III, epsilon subunit [Sinorhizobium fredii NGR234]
          Length = 232

 Score =  160 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 114/234 (48%), Positives = 155/234 (66%), Gaps = 4/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLDS+ DR+IEIG VEL +   T RT  +++ P  RK  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDSREDRVIEIGGVELENQFPTGRTIHIYINPGDRKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+FLKDKPSF+ +  E  DFF +      AHNA FD+GFINAE  R+   P+   R+ DT
Sbjct: 61  DDFLKDKPSFADVVEEIVDFFGDARWV--AHNATFDIGFINAEFDRLGLPPVVIDRVTDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+M+  G Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNSHRAKHGALLDSELLAEVYIEMIG-GRQAALGLV 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           T+E      +    P I +++R++ L  R+T+ E+  H   +  +G  AIW +Y
Sbjct: 178 TSEIGGLAVQADDGPII-VMQRERLLAPRLTEAEIAAHAALVSKIGAKAIWMKY 230


>gi|323135821|ref|ZP_08070904.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242]
 gi|322398912|gb|EFY01431.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242]
          Length = 239

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 107/237 (45%), Positives = 142/237 (59%), Gaps = 10/237 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD  K DR++EIGAVE+L+   T R F  ++ P  R    EA ++HG+
Sbjct: 1   MREIVFDTETTGLDPSKGDRVVEIGAVEILNLIPTGRVFHAYIDPE-RDMPEEAFRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL     F  I  EF DF  +      AHNA+FDV FINAE   +N  PL P+RI+D
Sbjct: 60  SREFLSQHRKFREIAEEFIDFIEDSPMV--AHNAEFDVRFINAEFSMLNFAPLAPARIVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IARR HP S   L++LC+RYGI +S R KHGALLD+ LL++VY ++M  G Q     
Sbjct: 118 TLAIARRLHPGSPASLDALCQRYGIDLSRRDKHGALLDAGLLAEVYAELMG-GRQAALSL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           +T       +    +       R  PL  R+T  E + H   +  L K+AIWDRY++
Sbjct: 177 QTVSVSRRAQTSDLLR-----ARPAPLEDRLTPAEDEAHRAFVAGLSKSAIWDRYLT 228


>gi|49474836|ref|YP_032877.1| DNA polymerase III epsilon chain [Bartonella henselae str.
           Houston-1]
 gi|49237641|emb|CAF26821.1| DNA polymerase III epsilon chain [Bartonella henselae str.
           Houston-1]
          Length = 235

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 101/234 (43%), Positives = 144/234 (61%), Gaps = 3/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD + DRIIEIG VE++D   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGRRFHVYLNPQGVIIPDEVVAVHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LK++ SFS I  EF +F N       AHNA FD+GF+NAEL R NK  +    I+DT
Sbjct: 61  NERLKNEKSFSDIADEFLEFINGATMI--AHNASFDIGFLNAELARANKPLISVDNILDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRK P + N L+ LCKR+GI  SHR  HGALLD+ +L+D+YI+++  G Q    F 
Sbjct: 119 LAMARRKFPMAPNSLDVLCKRFGIDNSHRVFHGALLDAEILADIYIELIG-GKQGVLVFG 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            N     + E       ++  R + L  R++ +E   H   ++ +G+ A+W+ +
Sbjct: 178 NNGSVHEESENDKNAFSAVKIRPQNLSPRLSVQEKTMHADFVKKMGEKALWNSF 231


>gi|222147020|ref|YP_002547977.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4]
 gi|221734010|gb|ACM34973.1| DNA polymerase III epsilon chain [Agrobacterium vitis S4]
          Length = 236

 Score =  159 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 112/235 (47%), Positives = 154/235 (65%), Gaps = 4/235 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+SK DR+IEIG +EL ++  T R+F V++ P  R   P+AL +HGIT
Sbjct: 1   MREIVFDTETTGLESKLDRVIEIGGIELFNHFPTGRSFHVYINPADRAIHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            EFLKDKP F+ I  +   FF+       AHNA FD+GFINAE +R+ +  + P  +IDT
Sbjct: 61  PEFLKDKPVFADIVEDLVAFFDGAKWV--AHNATFDMGFINAEFERLGRPLVGPEHVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+M+  G Q  FG +
Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMLG-GRQATFGLE 177

Query: 187 TN-EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            +         + +   + +  R K L +R+T+ E + H   ++ LG+ AIW  Y
Sbjct: 178 QSGNSDKRSRTQDSNVTVEIAARPKTLASRLTEAEQERHAALVKRLGQKAIWAHY 232


>gi|86355674|ref|YP_467566.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42]
 gi|86279776|gb|ABC88839.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CFN 42]
          Length = 240

 Score =  159 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 113/243 (46%), Positives = 157/243 (64%), Gaps = 8/243 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK  F+++  E   FF +      AHNA FD+GFINAE  RI   P+ P ++IDT
Sbjct: 61  DEFLKDKKPFAAVADEILAFFGDGKWI--AHNATFDMGFINAEFARIGLPPILPDKVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+M+  G Q  FG  
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIG-GRQAAFGLS 177

Query: 187 TNEDRFFKEE-----KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
            +             +  +   + L+R +PL +R+++ E   H+  +  LG+  IW +Y 
Sbjct: 178 ISGQPGQAARGEMAMEDDMAFAAALERPRPLGSRLSRSEAQAHEALVAKLGEKGIWAKYA 237

Query: 242 SSN 244
           SSN
Sbjct: 238 SSN 240


>gi|296444995|ref|ZP_06886956.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium
           OB3b]
 gi|296257416|gb|EFH04482.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium
           OB3b]
          Length = 242

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 100/237 (42%), Positives = 144/237 (60%), Gaps = 9/237 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD  K  RI+EIGAVE+ +   T RTF  +L P  R    EA ++HG+
Sbjct: 1   MREIVFDTETTGLDPAKGHRIVEIGAVEISNLIPTGRTFHFYLDPE-RDMPEEAFRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  FL  +  F  I   F +F  +     +AHNA+FD+ F+NAEL  +  + +   R++D
Sbjct: 60  STAFLTGQKKFREIAEAFLEFVADAQ--LVAHNAEFDMRFVNAELAMLGLEAIAADRVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IARR HP + N L++LC+RYG+  S R KHGALLDS+LL++VY ++M  G Q     
Sbjct: 118 TLTIARRLHPGAANSLDALCQRYGVDSSRRDKHGALLDSYLLAEVYAELMG-GRQSALVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           +T+     ++    +    L  R  PL  R+ +EE+  H++   TLGK  IW RY++
Sbjct: 177 QTSVAAAAQDLGADL----LRSRPAPLAPRLAEEEIAAHERFAATLGKAPIWSRYLT 229


>gi|254477303|ref|ZP_05090689.1| DNA polymerase III, epsilon subunit [Ruegeria sp. R11]
 gi|214031546|gb|EEB72381.1| DNA polymerase III, epsilon subunit [Ruegeria sp. R11]
          Length = 244

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 95/246 (38%), Positives = 139/246 (56%), Gaps = 20/246 (8%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVELL++  T  TF V++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPE-RSMPAEAFGVHGI 59

Query: 66  TDE-------------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             +              L+DKP F+ +   F DF  +       HNA FD+ F+N EL+R
Sbjct: 60  GPDLLEPPQQPAPGAVTLRDKPVFAKVGKAFVDFVRDSKMI--IHNASFDMKFLNYELER 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    L   + +DTL+IAR++ P S   L++LC+R+ I  S+R+ HGALLDS +L+DVY+
Sbjct: 118 MGLAALPMDQAVDTLAIARKRFPGSPATLDALCRRFNIDNSNRTLHGALLDSEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++  G Q +FG  T +    K     V +     R  PL  RIT++E + H   +  +G
Sbjct: 178 ELIG-GRQPDFGLSTAKSE--KSSTVQVDDWRPTARPSPLPPRITEQEKEAHAAFVAKMG 234

Query: 233 KNAIWD 238
           + A+W+
Sbjct: 235 EGALWN 240


>gi|126724532|ref|ZP_01740375.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Rhodobacterales bacterium HTCC2150]
 gi|126705696|gb|EBA04786.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Rhodobacterales bacterium HTCC2150]
          Length = 230

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 89/234 (38%), Positives = 133/234 (56%), Gaps = 6/234 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTG D    DRI+EIGAVEL ++  T +T+  ++ P  R    EA ++HG+
Sbjct: 1   MRELVLDTETTGFDPFSGDRIVEIGAVELFNHMPTGKTYHQYINPQ-RAMPAEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL  +P F+ I   F DF        + HNA FD+ F+NAEL  + +  L   + +D
Sbjct: 60  GDEFLARQPVFADIAQAFVDFVGT--DLLVIHNASFDMKFLNAELDWLGRAKLPMEQSLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR+K P S   L++LC+R+G+    R KHGALLDS +L++VY++++  G Q +FG 
Sbjct: 118 TLAIARKKFPGSPASLDALCRRFGVNNDAREKHGALLDSEILAEVYLELIG-GRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            T        +           R  PL  RI++EE   H + ++ L    +W +
Sbjct: 177 NTAAAASSGTDAG-FSEWRAQPRPNPLAPRISEEEAKAHREFVEKLADGGLWPK 229


>gi|85707524|ref|ZP_01038599.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius sp. 217]
 gi|85667957|gb|EAQ22843.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius sp. 217]
          Length = 231

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 91/234 (38%), Positives = 137/234 (58%), Gaps = 6/234 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + +  DRI+EIGAVEL ++  T RTF  ++ P  R     A  +HG+
Sbjct: 1   MREIVLDTETTGFEPESGDRIVEIGAVELYNHMPTGRTFHKYINPQ-RAMPEAAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL++KP F+ I  EF DF  +  A+ + HNA FD+ F+NAEL  +    L   + ID
Sbjct: 60  GDDFLRNKPLFAEIAQEFLDFVLD--AKLVIHNAAFDMKFLNAELGWLKLPHLPWEQAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR+K P S   L++LC+R+ I  S R+ HGALLDS +L++VY++++  G Q +F  
Sbjct: 118 TLAIARQKFPGSPASLDALCRRFQIDNSARTLHGALLDSEILAEVYLELIG-GRQPDFAL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            +       +  +         R  PL  R+T+ E   H   +  +G+ A+W +
Sbjct: 177 SSTSSTRSSDMTEPDV-WRPHPRPTPLAPRLTESEAAAHQAFVARMGEAALWRK 229


>gi|56698700|ref|YP_169077.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3]
 gi|56680437|gb|AAV97103.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3]
          Length = 241

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 92/247 (37%), Positives = 136/247 (55%), Gaps = 21/247 (8%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL ++  T  T+  ++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPETGDRIVEIGAVELWNHIATGNTYHQYINPE-RMMPAEAFGVHGI 59

Query: 66  TDEFLKDK-------------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L+               P F+ +   F DF  + +   + HNA FD+ F+NAEL+ 
Sbjct: 60  GPDILEPPQQPEPGQVTLRDKPVFAKVGQAFRDFVADSH--LVIHNASFDMKFLNAELRW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    +   R IDTL +ARRK P S   L++LC+R+GI  S+R  HGALLD+ +L++VY+
Sbjct: 118 MGLPEIPFDRAIDTLGMARRKFPGSPATLDALCRRFGIDNSNRVLHGALLDAEILAEVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++  G Q +FG  T       +          + R  PL  RIT+ E   H + ++ LG
Sbjct: 178 ELIG-GKQPDFGLST---VTTGDGPGQETAWRAMPRPTPLPARITEAERTAHAEFVEKLG 233

Query: 233 KNAIWDR 239
           +NA+W R
Sbjct: 234 ENAVWKR 240


>gi|163738000|ref|ZP_02145416.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           BS107]
 gi|163742604|ref|ZP_02149990.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161384189|gb|EDQ08572.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161388616|gb|EDQ12969.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           BS107]
          Length = 245

 Score =  157 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 93/246 (37%), Positives = 140/246 (56%), Gaps = 19/246 (7%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVELL++  T  TF V++ P  R    +A K+HGI
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPQ-RSMPQDAFKVHGI 59

Query: 66  TDE-------------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             +              L+DKP F+ +  +F DF  +       HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQQPGPGAVTLRDKPVFAKVGQKFLDFVRDSKMV--IHNAAFDMKFLNAELDW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    L   + +DTL+IAR++ P S   L++LC+R+ I  S+R+ HGALLDS +L+DVY+
Sbjct: 118 MGLPKLPMDQAVDTLAIARKRFPGSPATLDALCRRFNIDNSNRTLHGALLDSEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++  G Q +FG   + D+       T  +     R  PL +R+T++E + H   +  +G
Sbjct: 178 ELIG-GRQPDFGLSASNDKSSSGSVVT-DDWRPTARPSPLPSRLTEQEQEAHANFVAKMG 235

Query: 233 KNAIWD 238
             A+W+
Sbjct: 236 DAALWN 241


>gi|254472171|ref|ZP_05085571.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062]
 gi|211958454|gb|EEA93654.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062]
          Length = 236

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 96/239 (40%), Positives = 146/239 (61%), Gaps = 8/239 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I FD ETTGL+    DR++EIG VEL+++  T RT  +++ P  R    EA ++HG+
Sbjct: 1   MREISFDTETTGLNPLDGDRLVEIGGVELINFIPTGRTCHLYVNPQ-RDMPEEAFRIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +  EF DF  +     + HNA FD+GFIN EL R NK  +  ++++D
Sbjct: 60  SAEFLSDKPVFADVADEFLDFVGDAR--LVIHNAPFDMGFINMELARCNKPKISNTQVLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRK P+    L++LC RYGI  S R  HGALLD+ LL++VY++M  GG Q N G 
Sbjct: 118 TLKLARRKFPTGSVSLDALCSRYGIDNSKRVYHGALLDAELLAEVYLEM-NGGKQKNLGL 176

Query: 186 KTNEDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
             +++    +     +    I+  +R  PL   +++EE++ H K I  +  +  W++Y+
Sbjct: 177 MPDDEAIDLDNIGDDQPKQRIAAKQRPVPLSPALSEEEIEAHAKFIAGMKTDPAWNKYL 235


>gi|110677834|ref|YP_680841.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh
           114]
 gi|109453950|gb|ABG30155.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh
           114]
          Length = 228

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 97/234 (41%), Positives = 144/234 (61%), Gaps = 8/234 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL+ +  T RT+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGRTYHQYINPE-RSMPEEAFQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ +   F DF  +  A+ + HNA FD+ F+NAEL  IN   +   + ID
Sbjct: 60  GDDFLRDKPKFAEVGQAFLDFIGD--AKLVIHNAAFDIKFLNAELGWINLPKIPWEQAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IAR++ P S   L++LC+R+GI  + R+ HGALLDS +L++VY++++  G Q +FG 
Sbjct: 118 TLDIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILAEVYLELIG-GRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
               +   K    T  + +   R  PL +RIT+EE   H   +  LG +A+W +
Sbjct: 177 S---NIPQKSAGDTSVDWTPRPRPTPLPSRITEEEAAAHADFVAKLGDDAVWLK 227


>gi|85375423|ref|YP_459485.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis
           HTCC2594]
 gi|84788506|gb|ABC64688.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis
           HTCC2594]
          Length = 229

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 91/233 (39%), Positives = 132/233 (56%), Gaps = 6/233 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD K  DR++EIG VEL++   T  TF  +  P  R   P A ++HG+
Sbjct: 1   MREIVFDTETTGLDPKTGDRMVEIGCVELMNRVPTGETFHAYYNPE-RDMPPAAEEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  FL DKP F        +F  +  A  +AHNA FD GF+N EL+ I ++ +   R++D
Sbjct: 60  SAAFLSDKPLFRDTADALLEFLGD--APLVAHNAGFDFGFLNTELELIEREAISLDRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ IAR+KHP ++  L++LC RYG+  SHR KHGALLD+ LL+ VY++++  G QI  G 
Sbjct: 118 TVQIARKKHPGAKVSLDALCSRYGVDRSHRVKHGALLDAELLAQVYVELLG-GRQIGLGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
                     E    P         P     + EEL  H   ++ + ++ +W+
Sbjct: 177 DPEAADTDPSEAAWKPETVARAFRTPRPHAASAEELARHKVFLEGI-ESPLWN 228


>gi|326796075|ref|YP_004313895.1| DNA polymerase III subunit epsilon [Marinomonas mediterranea MMB-1]
 gi|326546839|gb|ADZ92059.1| DNA polymerase III, epsilon subunit [Marinomonas mediterranea
           MMB-1]
          Length = 235

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/236 (34%), Positives = 120/236 (50%), Gaps = 6/236 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTG+D K   RIIEIG VE++    T R F V++ P+ R+   EA ++HGI
Sbjct: 1   MRQVVLDTETTGIDPKQGHRIIEIGCVEMIGRKLTKRHFHVYINPD-REVEEEAFQVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++EFL DKP F  I  EF DF                       +        D   I D
Sbjct: 60  SNEFLADKPRFHEIAQEFLDFIRGAELIIHNAPFDVGFMDHEFSMLGNFPKTRDVCEIFD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L  AR+KHP ++N+L++LC+RYGI  SHR  HGALLDS +L+DVY+ M  G + +    
Sbjct: 120 SLVFARKKHPGAKNNLDALCRRYGIDNSHRELHGALLDSEILADVYLLMTGGQTSLGLSM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
               +    +    +  +S   R      R  + E+  H++ +  + K    ++W 
Sbjct: 180 NDGSEGGDSDNVGEIRRLSP-DRPMLKVLRANETEMAAHEERLDLIDKKSGQSLWR 234


>gi|192288734|ref|YP_001989339.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           TIE-1]
 gi|192282483|gb|ACE98863.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 232

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 99/238 (41%), Positives = 140/238 (58%), Gaps = 9/238 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T RT+  +L P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHQYLNPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +  EF +F  +  A  + HNA FD+GFINAEL R+++ P+   R++D
Sbjct: 60  SSEFLADKPLFAHVADEFLEFIGD--APLVIHNASFDIGFINAELSRLSRAPVPRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++    Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIG-ARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
                       +        +R  PL  R+T+ +L+ H   I T+G+ AIW  Y+ +
Sbjct: 177 ADVPAEVVGAASENRRR----QRPAPLPNRLTEADLEAHRAFIATMGEKAIWPDYLPA 230


>gi|99082698|ref|YP_614852.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040]
 gi|99038978|gb|ABF65590.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040]
          Length = 243

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 85/242 (35%), Positives = 128/242 (52%), Gaps = 15/242 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVELL++  T  TF V++ P               
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPQRSMPHEAFGVHGIG 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNE----------QNAEWIAHNAKFDVGFINAELQRINK 115
            D     +P                         ++++ + HNA FD+ F+NAEL  +N 
Sbjct: 61  PDLLEPPQPPAPGQVILKDKPLFAEVGQAFLDFVRDSKMVIHNASFDMKFLNAELGWMNL 120

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             L   + IDTL++AR++ P S   L++LC+R+GI  S+R+ HGALLDS +L+DVY++++
Sbjct: 121 PQLPMDQAIDTLAMARKRFPGSPATLDALCRRFGIDNSNRTLHGALLDSEILADVYLELI 180

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
             G Q +FG      +    +     N     R+ PL +R+T EE   HD+ +  LG++A
Sbjct: 181 G-GRQPDFGLSA---QSSGGQNAVDTNWRPAPRETPLPSRLTAEEKAAHDEFVGKLGEDA 236

Query: 236 IW 237
           +W
Sbjct: 237 LW 238


>gi|86136750|ref|ZP_01055328.1| DNA polymerase III, epsilon subunit [Roseobacter sp. MED193]
 gi|85826074|gb|EAQ46271.1| DNA polymerase III, epsilon subunit [Roseobacter sp. MED193]
          Length = 243

 Score =  157 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 92/247 (37%), Positives = 138/247 (55%), Gaps = 21/247 (8%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH-- 63
           MR+IV D ETTG D    DRI+EIGAVELL++  T  TF V++ P  R    EA  +H  
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPE-RSMPQEAFGVHGI 59

Query: 64  -----------GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
                            L+DKP F+     F DF  +       HNA FD+ F+N EL R
Sbjct: 60  GPDLLEPPQKPEKGQVTLRDKPVFAKFGQAFLDFVRDSRMV--IHNASFDMKFLNFELDR 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    L   + +DTL++AR++ P S   L++LC+R+ I  S+R+ HGALLDS +L+DVY+
Sbjct: 118 MGLRTLPMEQALDTLAMARKRFPGSPATLDALCRRFQIDNSNRTLHGALLDSEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           + + GG Q +FG  TN      +    V +     R  PL +R+T +E + H+  ++ +G
Sbjct: 178 E-LSGGRQPDFGLSTNATAGGGQ---VVEDWRPAPRHTPLPSRLTAKEAEAHEAFVEKMG 233

Query: 233 KNAIWDR 239
           ++A+W++
Sbjct: 234 EDALWNQ 240


>gi|304311305|ref|YP_003810903.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1]
 gi|301797038|emb|CBL45251.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1]
          Length = 246

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/243 (32%), Positives = 123/243 (50%), Gaps = 8/243 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL+  +  RIIEIG VEL+D   T R +  ++ P  R     A+ +HGIT
Sbjct: 5   RQIVLDTETTGLEPAEGHRIIEIGCVELVDRRHTGRHYHQYINPE-RLVDAGAMAVHGIT 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +EFL DKP F+ I   F++F N                     L +      +   ++DT
Sbjct: 64  NEFLADKPKFAEIADAFFEFINGAELVIHNAAFDVGFINHEFNLLKRFGTVGEHCSVLDT 123

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +AR+KHP  +N+L++LC+RY I  S R  HGALLD+ +L+DVY+ M     Q    F 
Sbjct: 124 LLMARKKHPGQKNNLDALCRRYEIDNSQRELHGALLDAQILADVYLAMTG--GQTALSFS 181

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRYIS 242
           + ++                 R      R ++ E++ H++ +Q L K    N ++ +Y  
Sbjct: 182 SGDEGQSGAASVATVQRFSDNRAPLKVIRASQAEIEAHEQYVQLLDKRSSGNTVYRKYSP 241

Query: 243 SNQ 245
           S++
Sbjct: 242 SSE 244


>gi|114706065|ref|ZP_01438968.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506]
 gi|114538911|gb|EAU42032.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506]
          Length = 242

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 110/236 (46%), Positives = 157/236 (66%), Gaps = 4/236 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGLD+  DR+IEIG VEL ++  T +T+  ++ P GRK  P A  +HGI+
Sbjct: 1   MREIVFDTETTGLDNTIDRVIEIGGVELWNHIPTGKTYHQYIRPAGRKVDPAAFDVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFL DKP F  I  EF  FF++  A+ IAHNA FD+GF+NAELQR+   P++PS +IDT
Sbjct: 61  DEFLLDKPLFEEIADEFVAFFSD--AKLIAHNANFDIGFLNAELQRLRHPPIEPSLVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRK P +   L++LC R+ +  S R KHGALLDS LL+DVYI+++  G Q + G  
Sbjct: 119 LAMARRKFPMAPASLDALCSRFAVDTSKREKHGALLDSELLADVYIELIG-GRQSSLGLI 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
              D  +   +   P +++  R+ PL  R++++E   H   +++LG  A+W RY+ 
Sbjct: 178 VEADETYASGEAGGP-VAVSAREAPLAPRLSEDEASRHLAFVESLGDEALWWRYLP 232


>gi|254462819|ref|ZP_05076235.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206679408|gb|EDZ43895.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 224

 Score =  156 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 90/228 (39%), Positives = 135/228 (59%), Gaps = 8/228 (3%)

Query: 13  DIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETTG D +  DRI+EIGAVEL++   T RT+  ++ P  R    +A ++HG+ D+FL+
Sbjct: 2   DTETTGFDPQQGDRIVEIGAVELINQMPTGRTYHQYINPE-RAMPDDAFQVHGLGDDFLR 60

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           DKP F  I  EF DF  +       HNA FD+ F+NAEL  +N   L   + +DTL+IAR
Sbjct: 61  DKPVFKQIAQEFLDFVKDDTMV--IHNASFDMKFLNAELGWLNMKQLPMEQALDTLAIAR 118

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191
           ++ P S   L++LC+R+ I  S+R+ HGALLDS +L++VY++++  G Q           
Sbjct: 119 KRFPGSPASLDALCRRFNIDNSNRTLHGALLDSEILAEVYLELLG-GRQPGLVLANTGGS 177

Query: 192 FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                ++T       KR  PL +RIT+EE   H   ++ LG++A+W +
Sbjct: 178 ASGGSEET---WRASKRPTPLPSRITEEEAKAHTAFVEKLGEDALWSK 222


>gi|126738511|ref|ZP_01754216.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6]
 gi|126720310|gb|EBA17016.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6]
          Length = 242

 Score =  156 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 86/246 (34%), Positives = 138/246 (56%), Gaps = 18/246 (7%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-------- 57
           MR+IV D ETTG D    DRI+EIGAVEL ++  T +T+  ++ P               
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELFNHMPTGKTYHEYINPERSMPHEAFGVHGIG 60

Query: 58  ----EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
               E  +        L+DKP F+ +   F DF  +  ++ + HNA FD+ F+NAEL  +
Sbjct: 61  PDLLEPPQQPEKGQVTLRDKPVFAKVGQSFLDFVQD--SKLVIHNASFDMKFLNAELDWM 118

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               L  ++ IDTL++AR++ P +   L++LC+R+ I  S+R+ HGALLDS +L++VY++
Sbjct: 119 GLPKLPLNQAIDTLAVARKRFPGAPATLDALCRRFQIDNSNRTLHGALLDSEILAEVYLE 178

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           ++  G Q +FG  T       +E +   +    +R  PL +R+T+EEL  HD  ++ +G 
Sbjct: 179 LIG-GRQPDFGLST--STSGSKEGQVAEDWRPTQRATPLPSRLTQEELSAHDAFVEKMGD 235

Query: 234 NAIWDR 239
            A+W +
Sbjct: 236 AALWRQ 241


>gi|192359256|ref|YP_001982513.1| DNA polymerase III subunit epsilon [Cellvibrio japonicus Ueda107]
 gi|190685421|gb|ACE83099.1| DNA polymerase III, epsilon subunit [Cellvibrio japonicus Ueda107]
          Length = 237

 Score =  156 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 85/241 (35%), Positives = 127/241 (52%), Gaps = 13/241 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+  +  RIIEIG VEL++   T R +  ++ P  R+    A  +HGI
Sbjct: 1   MRQIVLDTETTGLEYSQGHRIIEIGCVELMNRRLTGRHYHQYINPE-REVDAGAFAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---ELQRINKDPLDPSR 122
           ++  L DKP F+ I  +F +F  +     I HNA FD+GFI+     L+           
Sbjct: 60  SNAMLNDKPVFARIVDDFLNFVGDAE--LIIHNAAFDIGFIDHELNMLRPGFGSIKGRCG 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDTL +AR KHP  +N+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M     Q +
Sbjct: 118 VIDTLLLARNKHPGQKNNLDALCKRYGVDNSQRDLHGALLDAEILADVYLAMTG--GQTS 175

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
                N+ +      +        +R        + EEL  H++ +  +    G N +W 
Sbjct: 176 LSLGGNQAKAEGGGNQEGIRRLSSQRPALRVISASAEELQAHEEKLAAIARSSGDNCLWL 235

Query: 239 R 239
           +
Sbjct: 236 K 236


>gi|158421629|ref|YP_001522921.1| DNA polymerase III [Azorhizobium caulinodans ORS 571]
 gi|158328518|dbj|BAF86003.1| DNA polymerase III [Azorhizobium caulinodans ORS 571]
          Length = 240

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 94/236 (39%), Positives = 145/236 (61%), Gaps = 6/236 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++ K DR++EIG VE+++   T  TF V++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLEANKGDRVVEIGCVEMVNRILTGNTFHVYINPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +   F +F        + HNA FD+GF+NAEL R++++P+   R++D
Sbjct: 60  SSEFLSDKPKFAEVADAFLEFIAG--DTLVIHNAAFDIGFLNAELARLSREPIARDRVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+++ARRKHP +   L+ L KRYGI  S R KHGALLDS LL++VY +++ G   +  G 
Sbjct: 118 TVALARRKHPGASAKLDDLMKRYGIDASRRVKHGALLDSELLAEVYSELLGGRQAMLVGL 177

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
              ++            ++   R  PL +R++ EE+  H + I  +G+  IW++Y+
Sbjct: 178 A--DETSEAPRLVVEVAVAARARPVPLPSRLSAEEIAAHREFIGGMGEKGIWNQYL 231


>gi|316931718|ref|YP_004106700.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
           DX-1]
 gi|315599432|gb|ADU41967.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           DX-1]
          Length = 232

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 98/238 (41%), Positives = 139/238 (58%), Gaps = 9/238 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T RT+  +L P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHRYLNPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +  EF +F  +     + HNA FD+GFINAEL R+++ P+   R++D
Sbjct: 60  SAEFLADKPLFAQVADEFLEFIGD--DPLVIHNASFDIGFINAELSRLSRAPVPRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++    Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIG-ARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
                       +        +R  PL  R+T  +L+ H   I T+G+ AIW  Y+++
Sbjct: 177 ADVPAEVVGAASENRRR----QRPAPLPNRLTDADLEAHRAFIATMGEKAIWPDYLAA 230


>gi|159045988|ref|YP_001534782.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
 gi|157913748|gb|ABV95181.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
          Length = 230

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 88/233 (37%), Positives = 140/233 (60%), Gaps = 7/233 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  + DR++EIG VEL ++  T R +  ++ P  R     A ++HG+
Sbjct: 1   MREIVLDTETTGFEPSEGDRLVEIGGVELFNHVPTGRVYHQYINPQ-RSMPQSAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL DKP F+ +   F DF  +  A+ + HNA FD+ F+NAEL  + K  L   + ID
Sbjct: 60  GDDFLADKPLFAEVAEAFLDFIGD--AKLVIHNAAFDMKFLNAELGWLGKPLLPMEQAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IARRK P S   L++LC+R+G+  S R KHGALLDS +L++VY++++  G Q     
Sbjct: 118 TLAIARRKFPGSPASLDALCRRFGVDNSAREKHGALLDSEILAEVYLELIG-GQQPGLEL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
            + +      +     ++    R  PL +R++++E   H   +++LG++A+W 
Sbjct: 177 SSVQTPST--QNVDNGHLRARPRPAPLPSRVSEKEKAAHAAFVESLGQSALWR 227


>gi|163757474|ref|ZP_02164563.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
 gi|162284976|gb|EDQ35258.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
          Length = 233

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 114/233 (48%), Positives = 155/233 (66%), Gaps = 4/233 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGLD+K DRIIEIG VEL +   T R+  +F+ P+GR   P+AL +HGIT
Sbjct: 1   MREIVFDTETTGLDNKVDRIIEIGCVELENQFPTGRSLHLFINPDGRAVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+FL DKP F+ +  E   FF+  +    AHNA FD+GF+NAE  RI   P+DP  +IDT
Sbjct: 61  DQFLADKPVFADLADEIAAFFDGAHYV--AHNANFDMGFLNAEFDRIGLPPVDPGLVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARR+HP   N L++LC+RYGI  +HR+KHGALLD+ LL+DVYI+M  GG Q   G  
Sbjct: 119 LALARRRHPMGPNSLDALCRRYGIDNAHRTKHGALLDAELLTDVYIEM-RGGRQAALGLS 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
           + E     EE ++V  I + +R   L  R+T  EL+ H   +  +G +A+W +
Sbjct: 178 SAEAGNKTEESESVV-IEIGERPGKLPERLTAGELEAHSTLVNRIGADALWLK 229


>gi|328541691|ref|YP_004301800.1| DNA polymerase III, epsilon subunit [polymorphum gilvum
           SL003B-26A1]
 gi|326411443|gb|ADZ68506.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 240

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 99/241 (41%), Positives = 140/241 (58%), Gaps = 11/241 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I FD ETTGLD +  DR++EIG VEL ++  T  T+ V++ P  R     A  +HG+
Sbjct: 1   MREIAFDTETTGLDPRNGDRLVEIGGVELFNHVPTGNTYHVYINPE-RDMPEAAFNVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ I  EF  F  +     + HNA FD+GFIN EL R  + P+  ++++D
Sbjct: 60  SAEFLADKPVFAEIVDEFLAFVGDAR--LVIHNAAFDMGFINMELSRAGRLPIPRTQVLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L++LC RYGI  S R++HGALLDS LL++VY++++  G Q   G 
Sbjct: 118 TLELARRKHPMGPNSLDALCGRYGIDNSRRTRHGALLDSELLAEVYLELIG-GRQTALGL 176

Query: 186 KTNED------RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
              E+          E        S   R  PL + +T+EE   H   +  +G+ AIW +
Sbjct: 177 VLQEEVSGRSYGGQSEGSGPAQVRSAPPRPVPLASWLTEEEKAAHATFVAGMGETAIWSK 236

Query: 240 Y 240
           Y
Sbjct: 237 Y 237


>gi|254511557|ref|ZP_05123624.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           KLH11]
 gi|221535268|gb|EEE38256.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           KLH11]
          Length = 240

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 82/244 (33%), Positives = 126/244 (51%), Gaps = 16/244 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL ++  T  T+ V++ P               
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELWNHVATGETYHVYINPERGMPDEAFGVHGIG 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWI----------AHNAKFDVGFINAELQRINK 115
            D     +P      +        +  +             HNA FD+ F+NAEL  +  
Sbjct: 61  PDLLENPRPPEKGEVTLKDKPVFAKVGQGFRDFVGDAQLVIHNASFDMKFLNAELGWMGV 120

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +  ++ IDTL+IAR++ P S   L++LC+R+GI  S+R  HGALLDS +L++VY++++
Sbjct: 121 PLIPMAQAIDTLAIARKRFPGSPASLDALCRRFGIDNSNRVLHGALLDSEILAEVYLELI 180

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
             G Q +FG  T+         +         R  PL +RIT++E   H K ++ LG++A
Sbjct: 181 G-GRQPDFGLSTSASNAAGGGDE----WRPTARPTPLSSRITEDERAAHQKFVEGLGESA 235

Query: 236 IWDR 239
           +W R
Sbjct: 236 LWTR 239


>gi|146337369|ref|YP_001202417.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. ORS278]
 gi|146190175|emb|CAL74167.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Bradyrhizobium sp. ORS278]
          Length = 232

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 94/237 (39%), Positives = 136/237 (57%), Gaps = 8/237 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD+ + DR++EIG VE+++   T + F  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHRYINPQ-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F  +  +F  F  +  A  + HNA FD+GFINAEL R+ +  +   R++D
Sbjct: 60  STEFLSDKPLFHEVVEDFLAFIGD--APLVIHNASFDIGFINAELDRVKRAAIPRERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VY+ ++    Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVG-ARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
             +            P     +RD PL  R+T+ E + H   + TLG   IW  +++
Sbjct: 177 TQDAQEIRIGNAGDTPR---RQRDVPLAPRVTEAEREAHRAFVATLGDKPIWMDFLT 230


>gi|292493431|ref|YP_003528870.1| DNA polymerase III subunit epsilon [Nitrosococcus halophilus Nc4]
 gi|291582026|gb|ADE16483.1| DNA polymerase III, epsilon subunit [Nitrosococcus halophilus Nc4]
          Length = 242

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 90/246 (36%), Positives = 135/246 (54%), Gaps = 12/246 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ K   RIIEIG VEL++  +T +TF  +L P  R+    ALK+HG+
Sbjct: 1   MRQIILDTETTGLEPKEGHRIIEIGGVELINRRRTGQTFHCYLNPE-RRVDEGALKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           ++EFL DKP F  +  EF  F  E     + HNA FDVGF++ EL              +
Sbjct: 60  SNEFLSDKPRFVEVAEEFLAFIREAE--LVIHNAPFDVGFLDHELSLLGSQWGKVSLYCQ 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR++HP  +N L++LCKRYG+  S R  HGALLD+ +L+ VY+ M  G + ++
Sbjct: 118 VLDTLVLARQRHPGQKNSLDALCKRYGVDNSRRDLHGALLDAEILAGVYLAMTGGQASLS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                 ED   +  +     ++  KR      R ++EE   H   +  + K      +W 
Sbjct: 178 LRGYGGEDSQSQPGEGKYRPVA-AKRPPLKVVRASEEERSAHQARLAAIDKVSGGACLWH 236

Query: 239 RYISSN 244
           +  S +
Sbjct: 237 QIESPD 242


>gi|319407879|emb|CBI81531.1| DNA polymerase III epsilon chain [Bartonella schoenbuchensis R1]
          Length = 235

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 99/234 (42%), Positives = 142/234 (60%), Gaps = 3/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD  +DRIIEIG VE++D   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLDKDSDRIIEIGCVEMVDRYLTKRQFHVYLNPQGVIIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LK++  F  I  EF +F +       AHNA FD+ F+NAEL RINK  +    +IDT
Sbjct: 61  NERLKNEKKFEDIADEFLEFIDGATMV--AHNASFDISFLNAELGRINKPLISVDNVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L+IAR+K P   N L+ LCKR+GI  S+R  HGALLD+ +L+DVYI+++  G Q    F 
Sbjct: 119 LAIARQKFPMGPNSLDVLCKRFGIDNSNRVLHGALLDAEILADVYIELIG-GKQGVLSFD 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            N D     +     + ++  R   L +R++ +E D H   ++ +G  A+W+ +
Sbjct: 178 NNSDLDENIQNGKNVSHTVKTRPHALPSRLSTQEKDMHADLVKKIGDKALWNNF 231


>gi|90420992|ref|ZP_01228896.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334770|gb|EAS48546.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 239

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 110/239 (46%), Positives = 152/239 (63%), Gaps = 6/239 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGLD   +R+IEIG VEL ++  T + +  F+ P GRK  P A  +HGI+
Sbjct: 1   MREIVFDTETTGLDPDVERVIEIGGVELWNHIPTGKNYHAFIRPAGRKVDPAAFDVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+FL DKP FS I  EF +FF+   A+ IAHNA FDV F+NAEL+RI++ P+DPS +IDT
Sbjct: 61  DDFLADKPLFSEIADEFLEFFSG--AKLIAHNAAFDVRFLNAELKRIDQPPIDPSVVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +ARRK P +   L++LC R+ +  S R KHGALLDS LL++VYI+++  G Q   G  
Sbjct: 119 LPMARRKFPMAPATLDALCSRFSVDTSRRDKHGALLDSELLAEVYIELIG-GRQAALGLA 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245
             ED     +        +  R  PL +R++++E+  H   + TLG  AIW  Y+   +
Sbjct: 178 VEEDAHEDADGNV---WRIAPRPVPLPSRLSQDEIVRHRAFVSTLGDEAIWWNYLERPE 233


>gi|327191192|gb|EGE58235.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CNPAF512]
          Length = 241

 Score =  155 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 106/240 (44%), Positives = 154/240 (64%), Gaps = 6/240 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK +F+ +  E   FF +      AHNA FD+GFINAE  RI   P+ P R++DT
Sbjct: 61  DEFLKDKKAFAEVAEEILAFFGDAKWI--AHNATFDMGFINAEFARIGLPPILPERVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGF 185
           LS+ARRKHP   N L++LC+RYG+  SHR+KHGALLDS LL++VYI+M+    + +  G 
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMIGGRQAALGLGL 178

Query: 186 KTNEDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                +  + +   +      ++L+R +PL  R+++ E   H   +  LG+  IW ++ S
Sbjct: 179 SGQSGQTARGDMAMEDDGVISAVLERPRPLAPRLSQAEAQAHAALVSKLGEKGIWSKFAS 238


>gi|163867311|ref|YP_001608505.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476]
 gi|161016952|emb|CAK00510.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476]
          Length = 235

 Score =  155 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 104/234 (44%), Positives = 146/234 (62%), Gaps = 3/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD + DRIIEIG VE++D   T   F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGCQFHVYLNPEGVIIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LK++ SFS I  EF +F N       AHNA FD+GFINAEL+R+NK  +    IIDT
Sbjct: 61  NERLKNEKSFSDIVDEFLEFINGATMI--AHNASFDIGFINAELKRVNKPLISVDNIIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRK P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+++  G Q   GF 
Sbjct: 119 LAMARRKFPMGPNSLDILCKRFGIDNSHRVLHGALLDAEILADVYIELIG-GKQGVLGFD 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
              +     +  T  + ++  R + L +R++ +E   H   I  +G+ A+W+ +
Sbjct: 178 NKRNLDEHIQNDTDMSYAVKFRPQALPSRLSAQEKKLHADFINKMGEKALWNTF 231


>gi|190889645|ref|YP_001976187.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652]
 gi|190694924|gb|ACE89009.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652]
          Length = 241

 Score =  155 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 107/240 (44%), Positives = 153/240 (63%), Gaps = 6/240 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK +F+ +  E   FF +      AHNA FD+GFINAE  RI   P+ P R++DT
Sbjct: 61  DEFLKDKKAFAEVAEEILAFFGDAKWI--AHNATFDMGFINAEFARIGLPPILPERVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGF 185
           LS+ARRKHP   N L++LC+RYG+  SHR+KHGALLDS LL++VYI+M+    + +  G 
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMIGGRQAALGLGL 178

Query: 186 KTNEDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                +  + E   +      ++L+R +PL  R+++ E   H   +  LG   IW ++ S
Sbjct: 179 SGQSGQTARGEMAMEDDGVISAVLERPRPLAPRLSQAEAQAHAALVSKLGDKGIWSKFAS 238


>gi|83594940|ref|YP_428692.1| DNA polymerase III, subunit epsilon [Rhodospirillum rubrum ATCC
           11170]
 gi|83577854|gb|ABC24405.1| DNA polymerase III, epsilon subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 230

 Score =  155 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 85/234 (36%), Positives = 137/234 (58%), Gaps = 12/234 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD    DR++EIG +EL+++  +     +++ P  R   PEA ++HG+
Sbjct: 1   MREIVLDTETTGLDPATGDRLVEIGCIELINHMPSGNDLHLYVNPE-RDMPPEAFRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++ FL DKP F+ +  EF  F  E     I HNA FD+ F+NAEL R+ + PL  SR +D
Sbjct: 60  SEAFLADKPLFAEVVDEFLAFIGEDR--LIIHNAAFDMKFLNAELARLKRPPLPMSRALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +A+ + P ++  L++LC+R+G+  S R+KHGAL+D  LL++VY++++  G +     
Sbjct: 118 TLRMAQARFPGAQASLDALCRRFGVDTSSRTKHGALIDCVLLAEVYLELIG-GREPGLAL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             ++ R     +   P         P     + EEL  H++ ++ + K+ IW R
Sbjct: 177 SADKRRDGAAVQVARP------FRAPRPHAASPEELAAHEEFLKKV-KDPIWRR 223


>gi|259417863|ref|ZP_05741782.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
 gi|259346769|gb|EEW58583.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
          Length = 243

 Score =  155 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 84/243 (34%), Positives = 128/243 (52%), Gaps = 15/243 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVELL++  T  TF V++ P               
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPERSMPHEAFGVHGIG 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNE----------QNAEWIAHNAKFDVGFINAELQRINK 115
            D     +P+     +                  ++++ + HNA FD+ F+NAEL  +N 
Sbjct: 61  PDLLEPPQPAAPGQVTLKDKPLFAEVGQAFLDFVRDSKMVIHNASFDMKFLNAELGWMNL 120

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             L   + IDTL++AR++ P S   L++LC+R+ I  S+R+ HGALLDS +L+DVY++++
Sbjct: 121 RQLPMEQAIDTLAMARKRFPGSPATLDALCRRFSIDNSNRTLHGALLDSEILADVYLELI 180

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
             G Q +FG  T   +    +     N     R  PL +R+T EE   H++ +  LG  A
Sbjct: 181 G-GRQPDFGLST---QSGSGQNAADTNWRPSPRATPLPSRLTSEEKTAHEEFVAKLGAEA 236

Query: 236 IWD 238
           +W+
Sbjct: 237 LWN 239


>gi|332306364|ref|YP_004434215.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173693|gb|AEE22947.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 235

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 100/241 (41%), Positives = 143/241 (59%), Gaps = 14/241 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D +   RIIEIG VEL++   T  TF V++ P  R    EA+++HGI
Sbjct: 1   MRQIVLDTETTGIDPRQGHRIIEIGCVELVNRRLTGNTFHVYINPQ-RLIEQEAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPS 121
           T+E+L DKP F+ I ++F  F N      + HNA FDVGF++ E       + K   D  
Sbjct: 60  TNEYLLDKPVFADIAADFAQFINGAQ--LVIHNAPFDVGFMDHEFDRVASMVGKKTADMC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR+ HP  +N+L++LCKRYGI  SHR  HGALLDS +L+DVY+ M  G + +
Sbjct: 118 TVLDTLEMARQIHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLMMTGGQTAL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238
           N   K+N D   + E     + SL   ++    R T +EL EH+K +  + K   + +W 
Sbjct: 178 NLSGKSNSDGGSQVEPIRRLDPSL---NQLKVLRATADELAEHEKRLDLVTKEGGSCLWR 234

Query: 239 R 239
            
Sbjct: 235 E 235


>gi|152995731|ref|YP_001340566.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1]
 gi|150836655|gb|ABR70631.1| DNA polymerase III, epsilon subunit [Marinomonas sp. MWYL1]
          Length = 237

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 82/236 (34%), Positives = 121/236 (51%), Gaps = 6/236 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTG+D K   RIIEIG VE++    TNR F V++ P+ R+   EA ++HGI
Sbjct: 1   MRQVVLDTETTGIDPKQGHRIIEIGCVEMIGRKLTNRHFHVYINPD-REVEEEAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++EFL DKP F  I  EF+DF                                +   + D
Sbjct: 60  SNEFLADKPRFHEIAQEFFDFIKGAELIIHNAPFDIGFMDHEFARIGGYPKTAEVCGVFD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L  AR+KHP  +N+L+ LC+RYGI  SHR  HGALLDS +L+DVY+ M  G + +    
Sbjct: 120 SLVYARKKHPGQKNNLDILCRRYGIDNSHRELHGALLDSEILADVYLLMTGGQTSLGLAS 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
            +  +   +   + +   S   R      R + EEL  H++ +  + K    ++W 
Sbjct: 180 SSESESKEEGGVEEIRRFS-ADRPALKVIRASSEELKLHEERLDLIDKKSGQSLWR 234


>gi|148251776|ref|YP_001236361.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. BTAi1]
 gi|146403949|gb|ABQ32455.1| DNA polymerase III, epsilon subunit [Bradyrhizobium sp. BTAi1]
          Length = 232

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 96/237 (40%), Positives = 136/237 (57%), Gaps = 8/237 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD+ + DR++EIG VE+++   T + F  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHRYINPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F  I  EF +F  +  A  + HNA FD+GFINAEL R+ +  +   R++D
Sbjct: 60  SSEFLADKPLFHEIVEEFLEFIGD--APLVIHNASFDIGFINAELDRVKRAAIPRERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VY+ ++    Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVG-ARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
             +            P     +R+ PL  R+T  E + H   I TLG   IW  +++
Sbjct: 177 TQDTQEIRVGAAGDTPR---RQRETPLAARVTDAEREAHRAFIATLGDKPIWMEFLA 230


>gi|325291458|ref|YP_004277322.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3]
 gi|325059311|gb|ADY63002.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3]
          Length = 233

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 111/234 (47%), Positives = 150/234 (64%), Gaps = 3/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGL+SK DR+IEIG +EL ++  T RT  +++ P  RK  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLESKLDRVIEIGGIELNNHFPTGRTLHIYINPEDRKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+FLKDKP F+ +  E  +FF        AHNA FD+GFINAE  R+   P+    + DT
Sbjct: 61  DDFLKDKPKFAEVVDEIREFFEGARWV--AHNATFDMGFINAEFARLGIAPVSSELVTDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+M+  G Q   GF 
Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIG-GRQTALGFG 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           +   +     +        L+R  PL +R+  E +  H K +  +G  AIW+RY
Sbjct: 178 SGSKQQAVTIEDDDVPHEPLQRPHPLPSRLDAETIAAHGKLVLGMGDKAIWNRY 231


>gi|254502882|ref|ZP_05115033.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11]
 gi|222438953|gb|EEE45632.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11]
          Length = 239

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 91/242 (37%), Positives = 140/242 (57%), Gaps = 9/242 (3%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I FD ETTGL+ +  DR++EIG VEL+++  T   + V++ P  R     A K+HG+
Sbjct: 1   MREISFDTETTGLNPRGGDRLVEIGGVELINHVPTGNAYHVYINPQ-RDMPEGAFKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++EFL DKP F  +  EF +F  +     + HNA FD+GFIN EL+R  +  +  +++ID
Sbjct: 60  SEEFLSDKPLFEQVADEFLEFVGD--GTLVIHNAAFDMGFINMELERCGRRTISNTQVID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFG 184
           TL IARRKHPS  N L++LC RYGI  S R KHGALLD+ +L++VY++M+      +   
Sbjct: 118 TLEIARRKHPSGPNSLDALCSRYGIDNSKRVKHGALLDAEILAEVYLEMIGGKQRALILD 177

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK----EELDEHDKTIQTLGKNAIWDRY 240
               +      +  + P      + +P  T ++     EE   H   +  +G +A+W +Y
Sbjct: 178 PDEEDGLIGSGDAGSEPGELGSFKARPRPTPLSALLRGEEFAAHKAFVAGMGDSALWKKY 237

Query: 241 IS 242
           + 
Sbjct: 238 VG 239


>gi|330503134|ref|YP_004380003.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
 gi|328917420|gb|AEB58251.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
          Length = 252

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 86/253 (33%), Positives = 128/253 (50%), Gaps = 9/253 (3%)

Query: 1   MIRKNKM-RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  +N + R +V D ETTG+      RIIEIG VELL    T R F V+L P+ R+    
Sbjct: 1   MTTENTVKRYVVLDTETTGMPVTDGHRIIEIGCVELLGRRLTGRHFHVYLNPD-REIDEG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKD 116
           A+ +HGIT+E++ DKP F  +  EF++F           A +  F         Q    D
Sbjct: 60  AIAVHGITNEYVADKPRFREVADEFYEFIKGAQLIIHNAAFDVGFINNEFALLGQSERAD 119

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             D   ++DTL +AR +HP  RN L++LCKRYG+  S+R  HGALLDS +L+DVY+ M  
Sbjct: 120 VSDYCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSNRELHGALLDSEILADVYLAMTG 179

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA- 235
           G + ++      +      ++ T        R +    R ++EEL  H   +  + K+A 
Sbjct: 180 GQTNLSLAGDGADGDGSGRQQATPIRRLDPSRARTRVIRASEEELAAHMARLAVIEKSAG 239

Query: 236 ---IWDRYISSNQ 245
              +W +   S +
Sbjct: 240 GPSLWAQLEKSPE 252


>gi|39933378|ref|NP_945654.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
           CGA009]
 gi|39653003|emb|CAE25745.1| putative DNA polymerase III epsilon chain [Rhodopseudomonas
           palustris CGA009]
          Length = 232

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 99/238 (41%), Positives = 140/238 (58%), Gaps = 9/238 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T RT+  +L P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHQYLNPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +  EF +F  +  A  + HNA FD+GFINAEL R+++ P+   R++D
Sbjct: 60  SSEFLADKPLFAHVADEFLEFIGD--APLVIHNASFDIGFINAELSRLSRAPVPRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++    Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIG-ARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
                       ++       +R  PL  R+T  +L+ H   I T+G+ AIW  Y+ +
Sbjct: 177 ADVPVEVAGAASESRRR----QRPAPLPNRLTDADLEAHRTFIATMGEKAIWPDYLPA 230


>gi|118591451|ref|ZP_01548849.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM
           12614]
 gi|118436123|gb|EAV42766.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM
           12614]
          Length = 237

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 99/239 (41%), Positives = 149/239 (62%), Gaps = 9/239 (3%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I FD ETTGL+ +  DR++EIG VEL+++  T +++ V++ P  R    EA ++HG+
Sbjct: 1   MREISFDTETTGLNPRGGDRLVEIGGVELINHVATGKSYHVYINPQ-RDMPEEAFRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F  +  EF +F  +  A  + HNA FD+GFIN EL+R  +  +  S+++D
Sbjct: 60  SVEFLSDKPLFEHVADEFLEFVGD--ATLVIHNAAFDMGFINMELERAGRRTIPNSQVLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHPS  N L++LC RYGI  S R KHGALLD+ +L++VY++++  G Q   G 
Sbjct: 118 TLDLARRKHPSGPNSLDALCSRYGIDNSKRIKHGALLDAEILAEVYLELIG-GRQTALGL 176

Query: 186 KTNEDRFFKE----EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            T+E+         E   +   +  KR  PL   + + EL+ H   I+ +G +AIW +Y
Sbjct: 177 ITDEEESSSASASFEPGELGTFNARKRPTPLQRLLQESELEAHKAFIEGMGDSAIWSKY 235


>gi|83645320|ref|YP_433755.1| DNA polymerase III subunit epsilon [Hahella chejuensis KCTC 2396]
 gi|83633363|gb|ABC29330.1| DNA polymerase III, epsilon subunit [Hahella chejuensis KCTC 2396]
          Length = 240

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 98/240 (40%), Positives = 141/240 (58%), Gaps = 14/240 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S+  RIIEIG VE++D S T   + V++ P  R+    A ++HGI
Sbjct: 1   MRQIVLDTETTGLETSQGHRIIEIGCVEVIDRSLTGNHYHVYINPE-REVDAGAFEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           ++EFL DKP F  +  +F DF +      + HNA FDVGFI+ E            D   
Sbjct: 60  SNEFLADKPKFKQVAQDFLDFISGAE--LVIHNAAFDVGFIDYEFSLLGAPFGKVSDYCS 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+KHP  +N+L++LCKRYGI  SHR  HGALLDS +L+DVY+ M  G + ++
Sbjct: 118 VVDTLMMARKKHPGQKNNLDALCKRYGIDNSHRDLHGALLDSEILADVYLAMTGGQTSLS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDR 239
                +ED   +EE   V  I+  +R      R ++ EL EH + +  + K A   +W +
Sbjct: 178 L---HSEDGGTEEEASEVRRIN-TQRPSLRVIRASEAELAEHARQLDAVEKAAGFSLWRK 233


>gi|330816255|ref|YP_004359960.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
 gi|327368648|gb|AEA60004.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
          Length = 240

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 114/238 (47%), Gaps = 9/238 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VE+L+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRIIEIGCVEMLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ +     DF                      E   +         +ID
Sbjct: 60  TTEFLSDKPKFAEVAHAICDFVRGAELIIHNAPFDIGFIDAEFERVGLPPLNQHCDGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
             + D           +++ L          +++EL  H   +  L K+     +W +
Sbjct: 180 LGDGDDEGGASGAARVSLATL---ALPVLAASEDELAAHLAQLDDLDKSVKGACVWRK 234


>gi|163797056|ref|ZP_02191011.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199]
 gi|159177572|gb|EDP62125.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199]
          Length = 230

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/232 (36%), Positives = 135/232 (58%), Gaps = 6/232 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD    DRI+EIG VEL+++  T RT   ++ P  R     A ++HG+
Sbjct: 1   MREIVLDTETTGLDPDTGDRIVEIGCVELINHVPTGRTLHHYINPE-RDMPLGAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL   P F ++  E  +F  +  A  + HNA FD+ FINAEL+R+N+  +  S+ +D
Sbjct: 60  SSEFLSAYPVFGALADEILEFLGD--AVLVIHNASFDMKFINAELRRLNRPEIPMSQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +ARRK+P ++  L++LC+R+ I   HR+ HGALLD+ LL+ VY++++  G Q +   
Sbjct: 118 TVQLARRKYPGAQASLDALCRRFEIDNGHRTLHGALLDADLLAAVYLELIG-GRQPDLAL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
              +        +T  +       +P     + +EL  H   ++++ K+ IW
Sbjct: 177 AAQKPSDESPGSRTAEHREARPYREPRPHAPSADELAAHRTFLESI-KDPIW 227


>gi|163854939|ref|YP_001629237.1| DNA polymerase III subunit epsilon [Bordetella petrii DSM 12804]
 gi|163258667|emb|CAP40966.1| DNA polymerase III, epsilon chain [Bordetella petrii]
          Length = 241

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 90/240 (37%), Positives = 132/240 (55%), Gaps = 15/240 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTGLD  +  RI+EIG VE+++   T     ++L P+ R + PEAL +HG+
Sbjct: 1   MRQIIFDTETTGLDPSQGHRIVEIGCVEIVNRVVTGNHLHIYLNPD-RDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--I 123
           T EFL DKP F+ +  +F +F        IAHNA FDV F NAEL  I +  L      +
Sbjct: 60  TTEFLADKPRFADVAQQFLEFIQGAE--LIAHNAAFDVKFFNAELSMIGRGDLSQYCALV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L  AR  +P  RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M  G   +  
Sbjct: 118 TDSLQHARTLYPGKRNSLDALCDRHGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                             + S+L          T +EL EH++ + +L K+     +W +
Sbjct: 178 DVDDASQGGGAGIALGAFDSSVLP-----VLAATADELAEHEEYLASLDKSVGGACVWRK 232


>gi|90021666|ref|YP_527493.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40]
 gi|89951266|gb|ABD81281.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40]
          Length = 238

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 93/241 (38%), Positives = 132/241 (54%), Gaps = 13/241 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+  +  RIIEIG VEL++   T R +  ++ P  R+    A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPSQGHRIIEIGCVELINRKLTGRHYHQYIKPE-REIDEGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           T+EFL DKP F  I  EF  F +      + HNA FDVGF+N E     R +    D   
Sbjct: 60  TNEFLADKPVFKDIADEFMAFVDGAE--LVIHNAPFDVGFLNHEFNLLGRGSTVINDRCS 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL++AR KHP  +N+L++LCKRYG   S R  HGALLD+ +L+DVY+ M  G + + 
Sbjct: 118 ILDTLALARNKHPGQKNNLDALCKRYGADNSARDLHGALLDAEILADVYLLMTGGQTNLA 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
            G   +        ++ V       R      R + EEL  H+K +  + K      +W 
Sbjct: 178 LGGAGSSSGMDDGGEELVR--VSADRKPLPIIRASAEELALHEKKLAEIDKASGGECLWL 235

Query: 239 R 239
           +
Sbjct: 236 K 236


>gi|332141113|ref|YP_004426851.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551135|gb|AEA97853.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 239

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/238 (34%), Positives = 125/238 (52%), Gaps = 12/238 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D K   RIIEIG VE+++   T   F V++ P GR    EA+++HGI
Sbjct: 1   MRQIVLDTETTGIDPKEGHRIIEIGCVEVVNRRLTGNHFHVYINP-GRHIEQEAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123
           T+EFL DKP+F+ +  EF +F                       ++   K  +       
Sbjct: 60  TNEFLTDKPTFAQVAQEFVNFIKGAQLVIHNAPFDVGFMDHEFGMEPSTKGVITNQICDV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL++AR+ HP  +N+L++LCKRYGI  SHR+ HGALLD+ +L+DVY+ M  G +++  
Sbjct: 120 LDTLTLARQMHPGQKNNLDALCKRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTKLKL 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238
                      E   T       K +K    + + +EL +H+  +  + K     +W 
Sbjct: 180 A-----SSGGSETDSTAIRRVQRKTNKLKVIKASADELTQHEARLDIVEKAGGKCLWR 232


>gi|240849687|ref|YP_002971075.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup]
 gi|240266810|gb|ACS50398.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup]
          Length = 235

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 103/234 (44%), Positives = 145/234 (61%), Gaps = 3/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD + DRIIEIG VE++D   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGRQFHVYLNPEGVIIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LK++ SFS I  EF +F         AHNA FD+GFINAEL+R+NK  +    I+DT
Sbjct: 61  NERLKNEKSFSDIVDEFLEFIKGATMI--AHNASFDIGFINAELKRVNKPLISVDNILDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRK P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+++  G Q   GF 
Sbjct: 119 LAMARRKFPMGPNSLDILCKRFGIDNSHRVLHGALLDAEILADVYIELIG-GKQGVLGFG 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
                    +     + ++  R + L +R++ +E   H   I T+G+ A+W+ +
Sbjct: 178 NRRGVDEHIQNDKDTSYAVKIRPQALPSRLSMQEKRLHADFINTMGEKALWNNF 231


>gi|260576103|ref|ZP_05844096.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2]
 gi|259021583|gb|EEW24886.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2]
          Length = 231

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 91/235 (38%), Positives = 137/235 (58%), Gaps = 6/235 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  +  RI+EIGA+EL ++  T RTF  +L P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGFEPSEGHRIVEIGALELFNHLPTGRTFHKYLNPE-RSMPKEAFDVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+ KP F ++  EF +F  +  A  + HNA FD+ F+NAEL   N   L   R +D
Sbjct: 60  GDDFLRGKPLFRAVAREFLEFIGD--ATLVIHNASFDMKFLNAELAAANLPLLPFERALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +AR+K P S   L++LC+R+G+  S R KHGALLDS +L++VY++++  G Q +   
Sbjct: 118 TVLMARKKFPGSPASLDALCRRFGVDNSGREKHGALLDSEILAEVYLELIG-GRQPDLVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             ++     +  +T  +     R  PL   +T+EE   H   +  LG +AIW + 
Sbjct: 177 AQHQSTKSGDTLETF-DWRPRPRSVPLPPGLTQEEAAAHTAFVARLGDDAIWLKR 230


>gi|116249771|ref|YP_765609.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254419|emb|CAK05493.1| putative DNA polymerase subunit [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 240

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 110/239 (46%), Positives = 152/239 (63%), Gaps = 8/239 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +F+ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK  F+ +  +   FF +      AHNA FD+GFINAE  RI   P+ P R++DT
Sbjct: 61  DEFLKDKQPFAEVAEQILTFFGDAKWI--AHNATFDMGFINAEFARIGLPPILPERVLDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+M+  G Q   G  
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIG-GRQAALGLG 177

Query: 187 TNEDRFFKEE-----KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
                          +  V   +LL+R +PL  R+++ E   H+  +  LG+ ++W +Y
Sbjct: 178 MVGKSNQAARGEMGMEDDVVIAALLERPRPLAPRLSQTEEQAHEALVAKLGEKSVWAKY 236


>gi|115522405|ref|YP_779316.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisA53]
 gi|115516352|gb|ABJ04336.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 229

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 92/236 (38%), Positives = 135/236 (57%), Gaps = 9/236 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+L+   T + +  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEILNRMPTGQIYHCYINPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL  KP F+ +  EF  F  +  A  + HNA FD+GFINAEL R+++ P+   R++D
Sbjct: 60  SAEFLSTKPLFAEVAEEFLAFIAD--APLVIHNASFDIGFINAELARLSQPPIPRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VY+ ++    Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLIG-ARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
                    E      +    +R+  L  R++  + + H   + TLG   IW+ Y+
Sbjct: 177 AETGS----ERASRAADAPRRQRETALVARVSDADREAHRAFVATLGDKPIWNEYL 228


>gi|254786149|ref|YP_003073578.1| DNA polymerase III subunit epsilon [Teredinibacter turnerae T7901]
 gi|237685417|gb|ACR12681.1| DNA polymerase III, epsilon subunit [Teredinibacter turnerae T7901]
          Length = 239

 Score =  153 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 91/241 (37%), Positives = 138/241 (57%), Gaps = 13/241 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +   RIIEIG VEL +   T + F  ++ P+ R+    A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPEQGHRIIEIGCVELFNRKLTGKHFHQYIRPD-REIDEGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSR 122
           T+EFL DKP F+ I  +F  F  +     + HNA FDVGF++ EL+ +N+      +   
Sbjct: 60  TNEFLADKPVFAQIADDFLTFIGDAE--LVIHNAPFDVGFLDHELRLLNRGLAPIRERCG 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL  ARRKHP  +N+L++LCKRY +  S R  HGALLD+ +L+DVY+ M  G + + 
Sbjct: 118 VLDTLVYARRKHPGQKNNLDALCKRYMVDNSQRDLHGALLDAEILADVYLAMTGGQTALA 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
            G +  +      E++ +       R +    R   EE++ H   + TL K    N +W 
Sbjct: 178 LGGQQGDGSGGDGEEQIIR--LSADRPRLKVLRANDEEIEAHKAKLATLDKASGGNCLWL 235

Query: 239 R 239
           +
Sbjct: 236 Q 236


>gi|254466659|ref|ZP_05080070.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I]
 gi|206687567|gb|EDZ48049.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I]
          Length = 241

 Score =  153 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 91/246 (36%), Positives = 135/246 (54%), Gaps = 21/246 (8%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVEL ++  T +TF  ++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELYNHMPTGKTFHEYINPE-RSMPAEAFSVHGI 59

Query: 66  TDE-------------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             +              L+DKP F+ I  +F DF  +     + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQKPEPGAVTLRDKPVFAKIGRKFLDFVQDSR--LVIHNASFDMKFLNAELDW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    L   + +DTL++AR++ P S   L++LC+R+ I  ++R+ HGALLDS +L+DVY+
Sbjct: 118 MGLPKLPMDQALDTLAMARKRFPGSPATLDALCRRFNIDNTNRTLHGALLDSEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++  G Q +FG          + +    +   + R  PL  RIT EE   H+  +  LG
Sbjct: 178 ELIG-GRQPDFGLSAQSSSSSAQVED---DWRPVPRSAPLPARITAEEQAAHEAFVAKLG 233

Query: 233 KNAIWD 238
             A+W 
Sbjct: 234 DAALWK 239


>gi|307824649|ref|ZP_07654873.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum
           SV96]
 gi|307734303|gb|EFO05156.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum
           SV96]
          Length = 241

 Score =  153 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 132/239 (55%), Gaps = 13/239 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTGL+  +  RIIEIG VEL++   T + F  ++ P  R     A+++HGIT
Sbjct: 9   RLVVLDTETTGLNPQEGHRIIEIGCVELVNRRLTGKRFHTYINPE-RIIDDGAIEVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSRI 123
           ++FL+DKP F+ +  +F  F  +     + HNA FDVGFIN E  R         D S++
Sbjct: 68  NQFLEDKPCFADVVKDFIAFIQDAE--LVIHNAPFDVGFINYEFSRLNSQTGTVTDYSKV 125

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL+ AR+KHP  RN L++LCKRYGI  SHR  HGALLD+ +L+DV++ M  G S +  
Sbjct: 126 FDTLTYARKKHPGQRNSLDALCKRYGIDNSHRDLHGALLDAEILADVFLLMTGGQSSL-- 183

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWDR 239
                + R                R      R T+EEL+ H + ++ + K     IW++
Sbjct: 184 -LDEGQGRQEGAAVNREIKHLSADRPALKIIRCTEEELNAHQQRLEAIEKAGGGCIWNQ 241


>gi|254295485|ref|YP_003061508.1| DNA polymerase III subunit epsilon [Hirschia baltica ATCC 49814]
 gi|254044016|gb|ACT60811.1| DNA polymerase III, epsilon subunit [Hirschia baltica ATCC 49814]
          Length = 233

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 88/238 (36%), Positives = 138/238 (57%), Gaps = 6/238 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGL +K  DRIIE+GAVE++D   T R F   + P  R+ S + +++ GI
Sbjct: 1   MREIVFDTETTGLSAKDGDRIIELGAVEIVDLLPTGREFHRLIYPE-RQVSEDTIRITGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE LK KP FS            +++  +AHNA+FD GF+N E++R+        R +D
Sbjct: 60  TDEMLKGKPVFSDPSVYKEFLDFIEDSPLVAHNAEFDRGFLNEEMRRVGGPDFPKERCVD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR K P +   L++LCKR+ I+++ R  H A++DS LL+ VY++ + GG   +F F
Sbjct: 120 TLALAREKFPGASATLDALCKRFDISLAKRDVHTAVVDSQLLASVYLE-LRGGRAHSFEF 178

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
              E+    + +         +R K L + +T+EE   H   I T  +  +W++ ++ 
Sbjct: 179 ---ENEGQSDAEVAFKRTQRRQRPKKLRSFLTEEENAAHQSFIATFDETPVWNKILTK 233


>gi|161170263|gb|ABX59233.1| polymerase III epsilon subunit uncultured proteobacterium
           [uncultured marine bacterium EB000_55B11]
 gi|297183792|gb|ADI19915.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 230

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 97/234 (41%), Positives = 145/234 (61%), Gaps = 7/234 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV+D ETTG D    DRI+EIGAVEL  +  T R +  ++ P  R   P A ++HG+
Sbjct: 1   MREIVWDTETTGFDPFAGDRIVEIGAVELNQHLPTGRVYHQYINPE-RDMPPGAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FLKD P FS+I  +F DF  +  A  IAHNAKFD+ FINAEL+  N   +  ++ +D
Sbjct: 60  SIDFLKDFPVFSNIARDFIDFVGD--ATLIAHNAKFDMKFINAELKNANLPQVPLNQSLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IAR+K P ++N L++LC+R+ I  S R KHGALLDS +L++VY++++  G Q +F  
Sbjct: 118 TLEIARKKFPGAQNSLDALCRRFNIDNSSRQKHGALLDSEILAEVYLELVG-GRQPDFSL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                   +    +    + L R K L + +T  E   H+  I++LG +A+W++
Sbjct: 177 SLVGQSKLESTSDSS--YAALSRPKKLNSLVTDVEKKAHNDFIKSLGTSAVWNK 228


>gi|86747524|ref|YP_484020.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           HaA2]
 gi|86570552|gb|ABD05109.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           HaA2]
          Length = 231

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 94/238 (39%), Positives = 134/238 (56%), Gaps = 9/238 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T + +  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIYNRMPTGQVYHQYINPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +   F DF  +  A  + HNA FD+GFINAEL R+++  +   R++D
Sbjct: 60  SSEFLADKPVFAQVADAFIDFIGD--APLVIHNASFDIGFINAELARLSRAAIPRERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++    Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIG-ARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
                        T       +R   L  R+T  +L+ H   I  +G  AIW+ Y ++
Sbjct: 177 AEVPSERSGAGGDT----PRRQRSIALTPRVTDADLEAHRAFIALMGDKAIWNEYTAA 230


>gi|238026771|ref|YP_002911002.1| DNA polymerase III subunit epsilon [Burkholderia glumae BGR1]
 gi|237875965|gb|ACR28298.1| DNA polymerase III, epsilon subunit [Burkholderia glumae BGR1]
          Length = 240

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/238 (31%), Positives = 114/238 (47%), Gaps = 9/238 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VE+L+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRIIEIGCVEMLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I     DF                      E   +       + +ID
Sbjct: 60  TTEFLSDKPKFAEIAQALCDFVRGGELIIHNAPFDIGFIDAELERLGMPPLLEHCNGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A+   P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
             +      E   +  + + L          +++EL  H   +  L K+     +W +
Sbjct: 180 LGDTGDRGGETGGSRVSFASLDLP---VIAASEQELAAHQAQLDDLDKSVKGACVWRQ 234


>gi|307297035|ref|ZP_07576851.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum
           L-1]
 gi|306877561|gb|EFN08789.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum
           L-1]
          Length = 230

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 90/232 (38%), Positives = 129/232 (55%), Gaps = 7/232 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTG D    DR++EIG +EL +   T RTF  +  P  R     A  +HG+
Sbjct: 1   MREIIFDTETTGFDPASGDRLVEIGCIELFNRVPTGRTFHAYYNPQ-RSMPAAAEAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D FL+DKP F     E   F  + +   +AHNA+FD GF+N EL+      +   R+ID
Sbjct: 60  SDGFLRDKPLFGHGVQELLAFLEDSH--LVAHNARFDFGFLNHELKLCGLPEVSMDRMID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T++IAR+ HP +++ L++LC RYGI  SHR KHGALLD+ LL+ +YI++   G QI  G 
Sbjct: 118 TVAIARQIHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAQLYIELTG-GRQIGLGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
              E++     +          R        + EEL+ H   + TL K  +W
Sbjct: 177 AQEEEKLIVNMELAAKAAVRPVRPA-RVFAASAEELERHAAFVATLEK-PLW 226


>gi|241206948|ref|YP_002978044.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860838|gb|ACS58505.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 240

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 111/239 (46%), Positives = 152/239 (63%), Gaps = 8/239 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +F+ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK  F  +  +   FF +      AHNA FD+GFINAEL RI   P+ P R++DT
Sbjct: 61  DEFLKDKQPFGEVAEQILTFFGDAKWI--AHNATFDMGFINAELARIGLPPILPERVLDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF- 185
           LS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+M+  G Q   G  
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIG-GRQAALGLG 177

Query: 186 ----KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
                    R     +  V   ++L+R +PL  R++  E   H+  +  LG+ ++W +Y
Sbjct: 178 MVGRSNQAARGDMGMEDDVVIAAVLERPRPLAPRVSDIEEQAHEALVAKLGEKSVWAKY 236


>gi|92115747|ref|YP_575476.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14]
 gi|91798641|gb|ABE61016.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14]
          Length = 239

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 95/239 (39%), Positives = 135/239 (56%), Gaps = 9/239 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV DIETTGLD  + DR++EIG VE+ +   T +TF  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDIETTGLDPLRGDRVVEIGCVEIFNRMPTGQTFHRYINPE-RDMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL +KP F+ I  +F +F  +  A  + HNA FD+ FINAEL R+    +   R++D
Sbjct: 60  SSEFLAEKPLFTHIVDDFLEFIGD--APLVIHNASFDISFINAELDRLKMRTIGRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++    Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIG-ARQPQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
                R          ++   +R  PL  R+T  +   H   + TLG+ AIW  +  + 
Sbjct: 177 AETASRRTG----GTLDMPRRQRTVPLAPRVTDADRIAHRDFVATLGEKAIWKEFAGTE 231


>gi|254283824|ref|ZP_04958792.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR51-B]
 gi|219680027|gb|EED36376.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR51-B]
          Length = 244

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 89/247 (36%), Positives = 130/247 (52%), Gaps = 11/247 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTGL+  +  RIIEIG VEL++   T   +  ++ P  R+  P A+++HGI
Sbjct: 1   MRHVVLDTETTGLEVTQGHRIIEIGCVELVNRKLTGNHYHQYVQPQ-REIDPGAMEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSR 122
           T +FL DKP+F  +  EF  F +        HNA FDVGFI+AEL R         D  R
Sbjct: 60  TPDFLADKPTFDRVADEFLAFIDGAELI--IHNAPFDVGFIDAELDRLGARRTAVADHCR 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + D+L +ARRKHP  RN L++LC+RYG+  S R+ HGALLD+ +L+DV++ M  G + + 
Sbjct: 118 VTDSLVLARRKHPGQRNSLDALCQRYGVDNSTRTLHGALLDAEILADVFLLMTGGQTSLG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWD 238
                       +            R      R + EEL  H++ +  +   +    IW 
Sbjct: 178 LSDDEEGSLDTADNPDGGIRRLPTSRPPLRVMRASAEELARHEQRLDAIAAASGGPVIWR 237

Query: 239 RYISSNQ 245
              S+ +
Sbjct: 238 EQQSAAE 244


>gi|90421821|ref|YP_530191.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB18]
 gi|90103835|gb|ABD85872.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 231

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 96/235 (40%), Positives = 135/235 (57%), Gaps = 9/235 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T +TF  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGQTFHRYINPE-RDMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL  KP F+ +  EF +F  E  A  + HNA FD+GFINAEL +I + P+   R++D
Sbjct: 60  SAEFLSTKPLFAEVVDEFLEFIAE--APLVIHNASFDIGFINAELGKIARPPIPRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++          
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILA 177

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           +    R  +            +R+ PL  R+T  +   H + + TLG   IW+ Y
Sbjct: 178 EAAPSRSNRPGDA-----PRRQRETPLAARVTDADRIAHREFVATLGDKPIWNEY 227


>gi|299133202|ref|ZP_07026397.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2]
 gi|298593339|gb|EFI53539.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2]
          Length = 230

 Score =  152 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 95/239 (39%), Positives = 140/239 (58%), Gaps = 10/239 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD+ + DR++EIG VE+ ++  T +T+ V++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDALRGDRLVEIGCVEMFNHMPTGQTYHVYINPE-RDMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+++  +F  F  +  A  I HNA FD+GFIN EL+R+ +  +   R++D
Sbjct: 60  SSEFLSDKPLFAAVAEDFLTFIGD--APLIIHNASFDIGFINMELERVKRAAIPRERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++    Q +   
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIG-ARQSSLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
                   +  +       +     PL  R+T EE++ H   + TLG N IW  +  + 
Sbjct: 177 AETRTTSIRVVEVERRVREV-----PLPPRMTPEEIEAHRAFVATLGDNPIWREFSDAE 230


>gi|46201693|ref|ZP_00054536.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 230

 Score =  152 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 91/234 (38%), Positives = 132/234 (56%), Gaps = 6/234 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D     R++EIG VEL ++  T   F  +  P  R    EA K+HG+
Sbjct: 1   MREIVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGEVFHRYCNPE-RDMPEEAFKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ I ++F +F  +  A  + HNA+FD+ FINAEL R+    L  SR ID
Sbjct: 60  SVEFLSDKPLFAEIVADFLEFIGD--APLVIHNAEFDMRFINAELARLGFPALPMSRSID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +AR+K P ++ +L++LC+R+ I  +HR+KHGALLDS LL++VY++++  G Q     
Sbjct: 118 TVMMARKKFPGAQANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQLIG-GRQPGLEL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
              +                    +P     T+EE   H   +  L KNA+W R
Sbjct: 177 GGGKGNGAGSAASASTQEVKRDFREPRPHGPTEEETAAHTAFVAKL-KNAVWLR 229


>gi|304320447|ref|YP_003854090.1| putative DNA polymerase III subunit epsilon and related
           3'-5'exonuclease [Parvularcula bermudensis HTCC2503]
 gi|303299349|gb|ADM08948.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Parvularcula bermudensis HTCC2503]
          Length = 245

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 87/241 (36%), Positives = 128/241 (53%), Gaps = 11/241 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD     R++EIGAVE+++ + T RTF V++ P  R     A ++H +
Sbjct: 1   MRQIVFDTETTGLDPLDGHRVVEIGAVEMVNGALTGRTFHVYVNPE-RDMPEAAYRVHKL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           + +FL DKP F         +   + A  +AHNA FD  F+   L  I        P  I
Sbjct: 60  SSQFLADKPIFKDPAIGQAFYQFCEGAVLVAHNASFDCKFMQHHLDEIGLPWAWGEPGDI 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +DTL IAR++ P S + L++LC+R+GI         HGALLDS LL++VYI++   G Q 
Sbjct: 120 VDTLQIARKRFPGSPSSLDALCQRFGIDLTEREAQGHGALLDSRLLAEVYIELTG-GRQG 178

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
              F  ++    + + +  P     +R  P    +T EE   H   I  + K+ +W RY 
Sbjct: 179 GLIFDPDQSVGGRRKARGEP---ARQRPGPRPQLLTDEEHAAHAALIGEM-KDPLWARYT 234

Query: 242 S 242
           +
Sbjct: 235 A 235


>gi|103488315|ref|YP_617876.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis
           RB2256]
 gi|98978392|gb|ABF54543.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis
           RB2256]
          Length = 231

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 94/232 (40%), Positives = 133/232 (57%), Gaps = 6/232 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTG D +  DR++EIG VEL+D  +T  TF  +  P  R     A  +HG+
Sbjct: 1   MREIIFDTETTGFDPRNGDRLVEIGCVELIDRRETGVTFHAYFNPE-RDMPAAAEAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL DKP F++   E  DFF +  A  IAHNA FD GF+NAEL+RI + PLD +R+  
Sbjct: 60  SSQFLSDKPLFAARVDELLDFFGD--APLIAHNAAFDFGFVNAELERIGRPPLDMARMCC 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +AR+ HP +++ L++LC RYGI  SHR KHGALLD+ LL+ +YI+M   G QI  G 
Sbjct: 118 TVQMARKLHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAHLYIEMTG-GRQIGLGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            ++                     +P     +  EL  H + +  L    +W
Sbjct: 177 ASSSAALPTASLLAARRDPARPFREPRPHMASAAELARHAEFVAGLN-QPLW 227


>gi|85709813|ref|ZP_01040878.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1]
 gi|85688523|gb|EAQ28527.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1]
          Length = 234

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 141/239 (58%), Gaps = 11/239 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++FD ETTGLD K  DR++EIG VE++   +T R++  +  P  R     A  +HG+
Sbjct: 1   MREVIFDTETTGLDPKTGDRMVEIGCVEMVGRVETGRSYHAYYNPE-RDMPSAAEAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  FL+ KP FS    E  +F  +  A  +AHNA FD GF+NAEL+RI ++ +   R++D
Sbjct: 60  SISFLETKPRFSETADELLEFLGD--APLVAHNAGFDFGFLNAELERIGRESIAMDRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T++IAR+KHP ++  L++LC RYGI  SHR KHGALLD+ LL+ VY+++   G QI    
Sbjct: 118 TVAIARKKHPGAKLSLDALCTRYGIDRSHRVKHGALLDAELLAQVYVELTG-GRQIGLEL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKR-----DKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             +         + V    + +R      +P     ++ EL  H + ++ + K+AIW R
Sbjct: 177 AADTVEDPHAAAEKVVETVIGRRSDQPFREPRPHAASENELARHREFVEGI-KDAIWAR 234


>gi|109898679|ref|YP_661934.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
           T6c]
 gi|109700960|gb|ABG40880.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
           T6c]
          Length = 235

 Score =  151 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 98/241 (40%), Positives = 142/241 (58%), Gaps = 14/241 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D +   RIIEIG VELL+   T  TF V++ P  R    EA+++HGI
Sbjct: 1   MRQIVLDTETTGIDPRQGHRIIEIGCVELLNRRLTGNTFHVYVNPQ-RLIEQEAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPS 121
           T+E+L DKP F+ + ++F  F +      + HNA FDVGF++ E         K   D  
Sbjct: 60  TNEYLLDKPLFADVAADFVKFISGAQ--LVIHNAPFDVGFMDHEFARVAAMAGKKTSDMC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR+ HP  +N+L++LCKRYGI  SHR  HGALLDS +L+DVY+ M  G + +
Sbjct: 118 TVLDTLEMARQIHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLMMTGGQTDL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238
           N   K+N D   + E+    +  L   ++    R T +EL EH+K +  + K   + +W 
Sbjct: 178 NLSGKSNSDGGSQVERIRRLDPQL---NQLKVLRATADELVEHEKRLDLVNKEGGSCLWR 234

Query: 239 R 239
            
Sbjct: 235 E 235


>gi|87198139|ref|YP_495396.1| DNA polymerase III, epsilon subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133820|gb|ABD24562.1| DNA polymerase III, epsilon subunit [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 230

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 92/235 (39%), Positives = 130/235 (55%), Gaps = 6/235 (2%)

Query: 6   KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            MR+IVFD ETTGLD +  DR++EIG +E+ +   T   F  +  P  R    EA  +HG
Sbjct: 1   MMREIVFDTETTGLDPRSGDRLVEIGCIEMFNRVPTGAVFHCYFNPE-RDMPAEAEAVHG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ++  FL DKP F+    +   F  +      AHNA FD GFIN EL+   ++P+   R++
Sbjct: 60  LSIAFLSDKPKFAEKADDLLAFIADSPMV--AHNAGFDFGFINNELELCGREPVSRDRMV 117

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DT++IARRKHP ++  L++LC RYGI  SHR+KHGALLD+ LL+ +Y++ + GG QI   
Sbjct: 118 DTVAIARRKHPGAKLSLDALCSRYGIDRSHRTKHGALLDAELLAQLYVE-LQGGRQIGLE 176

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                     EE  TV +        P     + EEL  H + +    +  IW R
Sbjct: 177 LAAQSAIAVTEEVVTVTSSVTRVFRSPRPHSASAEELARHAEFMAGFSE-PIWSR 230


>gi|332993503|gb|AEF03558.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2]
          Length = 238

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 80/238 (33%), Positives = 127/238 (53%), Gaps = 12/238 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D K   R+IEIG VEL++   T   F V++ P GR+   EA+ +HGI
Sbjct: 1   MRQIVLDTETTGIDPKEGHRVIEIGCVELVNRKLTGNHFHVYINP-GRQIEQEAIDVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123
           T+EFL DKP+F  +  +F +F                       ++   +  +       
Sbjct: 60  TNEFLTDKPTFRDVAEDFVNFIRGAQLVIHNAPFDVGFMDHEFGMEPKTRGVITKDICSV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL++AR+ HP  +N+L++LCKRYGI  SHR  HGALLD+ +L+DVY+ M  G +++N 
Sbjct: 120 LDTLAVARKMHPGQKNNLDALCKRYGIDNSHRELHGALLDAEILADVYLLMTGGQTKLNL 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238
             K + +      ++   N +     K    + + +EL +H+  +  + K     +W 
Sbjct: 180 ASKGSGENQSDALRRLNRNGN-----KLKVIKASADELAQHESRLDIVEKAGGKCLWR 232


>gi|294009991|ref|YP_003543451.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S]
 gi|292673321|dbj|BAI94839.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S]
          Length = 230

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 92/232 (39%), Positives = 132/232 (56%), Gaps = 7/232 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTG D    DR++EIG +ELL+   T RTF  +  P  R     A  +HG+
Sbjct: 1   MREIIFDTETTGFDPASGDRLVEIGCIELLNRVPTGRTFHAYYNPQ-RSMPAAAEAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D FL+DKP FS    E   F  + +   +AHNA+FD GF+N EL+      +  +R+ID
Sbjct: 60  SDSFLRDKPLFSHGVEELLAFLEDSH--LVAHNARFDFGFLNHELRLCGLPEVSMARMID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T++IAR+ HP +++ L++LC RYGI  SHR KHGALLD+ LL+ +YI++   G QI  G 
Sbjct: 118 TVAIARQLHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAQLYIELTG-GRQIGLGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
              E++     +          R        + EEL+ H   + TL K  +W
Sbjct: 177 AQEEEKRVANMELAAEVAVRPVRPA-RVFAASAEELERHAAFVATLEK-PLW 226


>gi|114769767|ref|ZP_01447377.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [alpha proteobacterium HTCC2255]
 gi|114549472|gb|EAU52354.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [alpha proteobacterium HTCC2255]
          Length = 230

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 97/234 (41%), Positives = 144/234 (61%), Gaps = 7/234 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV+D ETTG D    DRI+EIGAVEL  +  T R +  ++ P  R   P A ++HG+
Sbjct: 1   MREIVWDTETTGFDPFAGDRIVEIGAVELNQHLPTGRVYHQYINPE-RDMPPGAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FLKD P FS+I  +F DF  +  A  IAHNAKFD+ FINAEL+  N   +  ++ +D
Sbjct: 60  SIDFLKDFPVFSNIARDFIDFVGD--ATLIAHNAKFDMKFINAELKNANLPQVPLNQSLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IAR+K P ++N L++LC+R+ I  S R KHGALLDS +L++VY++++  G Q +F  
Sbjct: 118 TLEIARKKFPGAQNSLDALCRRFNIDNSSRQKHGALLDSEILAEVYLELVG-GRQPDFSL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                   +    +    + L R K L + +T  E   H+  I++L  +AIW++
Sbjct: 177 SLVGQSKLESTSDSS--YAALSRPKKLNSLVTDVEKKAHNDFIKSLCASAIWNK 228


>gi|91974903|ref|YP_567562.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB5]
 gi|91681359|gb|ABE37661.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 231

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 98/235 (41%), Positives = 137/235 (58%), Gaps = 9/235 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T + F  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIYNRMPTGQAFHRYINPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +  EF DF  +  A  + HNA FD GF+NAEL R+++  +   R++D
Sbjct: 60  SAEFLADKPLFAQVVDEFLDFIGD--APLVIHNASFDAGFLNAELARLSRAAIPRERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++          
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILA 177

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           +   +R  +   K        +R  PL  R+T+ +LD H   I T+G  AIW  Y
Sbjct: 178 EVPSERAGQGGDK-----PRRQRSTPLAARVTELDLDAHRAFIATMGDKAIWKEY 227


>gi|75674304|ref|YP_316725.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi
           Nb-255]
 gi|74419174|gb|ABA03373.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi
           Nb-255]
          Length = 239

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 95/239 (39%), Positives = 139/239 (58%), Gaps = 9/239 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T +TF  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEMFNRMPTGQTFHRYINPE-RDMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL DKP F+ +  EF +F  +  A  + HNA FD+ FINAEL R+ +  +   R++D
Sbjct: 60  SSDFLADKPLFAHVVDEFLEFIGD--APLVIHNASFDISFINAELDRLKRQAIGRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++    Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIG-ARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
                R    ++     +   +R  PL +R+T  +   H + I TLG+ AIW  ++  +
Sbjct: 177 VETAPR----QRGGSLEMPRRQRTVPLASRVTAADRIAHREFIATLGEKAIWMEFLEQD 231


>gi|217978678|ref|YP_002362825.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2]
 gi|217504054|gb|ACK51463.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2]
          Length = 235

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 98/237 (41%), Positives = 138/237 (58%), Gaps = 10/237 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD K   RI+EIGAVELL+   T ++F V++ P  R    EA ++HGI
Sbjct: 1   MREIVLDTETTGLDPKQGHRIVEIGAVELLNSIPTGQSFHVYIHPE-RDMPDEAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL  KP F+ I     DF  E      AHNA+FD  F+NAE  R   +PL   R++D
Sbjct: 60  SLEFLTGKPLFAEIVPALIDFLGEAKII--AHNAEFDFRFLNAEFLRAEAEPLAWERVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++ARR+ P + N L++LC R+G+  S R KHGALLD+ +L++VY ++   G Q    F
Sbjct: 118 TLALARRRFPGASNSLDALCARFGVDTSRRVKHGALLDAEILAEVYAELCG-GRQAALVF 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                     E   +       R +PL  +++ +E+  H   + TLG+ AIW  Y+S
Sbjct: 177 GGGLGSDAATEAALMRE-----RPEPLAPQLSPQEVAAHAAFVATLGEKAIWQAYLS 228


>gi|319898197|ref|YP_004158290.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73]
 gi|319402161|emb|CBI75687.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73]
          Length = 235

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 103/235 (43%), Positives = 146/235 (62%), Gaps = 4/235 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGL+ ++DRIIEIG +E+++   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNPQGVVIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LKD+  F  I     DF +       AHNA FD+GF+NAEL+R+NK  +  + +IDT
Sbjct: 61  NERLKDEKKFDDIVDALLDFIDGATIV--AHNANFDIGFLNAELERVNKPLVSINHVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L+IARR+ P+  N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+++  G Q  FGF 
Sbjct: 119 LAIARRRFPTGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIELIG-GKQGIFGFD 177

Query: 187 TNEDRFFKEEKKTVPNISLLK-RDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             ED      +         K R  PL  R++K+E D H   I+ +G  A+W+ +
Sbjct: 178 NCEDFDVMSVQDGKNAFHTTKIRFHPLPQRLSKQEKDMHANLIKKIGDKALWNHF 232


>gi|206559631|ref|YP_002230392.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia J2315]
 gi|198035669|emb|CAR51556.1| DNA polymerase III, epsilon chain [Burkholderia cenocepacia J2315]
          Length = 244

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 115/243 (47%), Gaps = 9/243 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ +  +  DF  +                       +         +ID
Sbjct: 60  TTEFLSDKPKFAEVAHQILDFVKDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYI 241
             +             +++ L          + +EL  H   +  L K+     +W +  
Sbjct: 180 LDDASADGGAANGKRVSLAALDLP---VVVASDDELAAHQAQLDELDKSVKGTCVWRQPA 236

Query: 242 SSN 244
            ++
Sbjct: 237 DTD 239


>gi|304392717|ref|ZP_07374657.1| DNA polymerase III, epsilon subunit [Ahrensia sp. R2A130]
 gi|303295347|gb|EFL89707.1| DNA polymerase III, epsilon subunit [Ahrensia sp. R2A130]
          Length = 249

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 95/240 (39%), Positives = 146/240 (60%), Gaps = 8/240 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M  I+FD ETTGL +K  DR+IEIGAVE+ D   T RTF  ++ P  R+  P+AL++HGI
Sbjct: 1   MHAIIFDTETTGLSAKDGDRVIEIGAVEMKDLIPTGRTFHQYIHPGDREIHPDALRVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E L D+P F ++   F DF  +     +AHNA FD+GF+NAE  R+N  P DP  ++D
Sbjct: 61  TMERLADEPRFEAVGQSFIDFCGDAM--LVAHNAPFDIGFLNAEYARMNLPPCDPELVLD 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+  AR+K P +R  L+ LC R+ I+ ++R  HGALLD+ LL++V+I++M  G+Q+  GF
Sbjct: 119 TVQAARKKFPGARVSLDMLCDRFNISRANRVLHGALLDARLLAEVFIELMG-GAQVKMGF 177

Query: 186 KTNEDRFFK----EEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
               +   +      ++   +    +R   +   +T EE + H+     +GK A+W++Y+
Sbjct: 178 DDEAETDAQRADPRNRRQTQHPPQPQRPSAMVYELTPEERERHNAMRAKIGKGALWNQYL 237


>gi|319404918|emb|CBI78518.1| DNA polymerase III epsilon chain [Bartonella sp. AR 15-3]
          Length = 235

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 101/235 (42%), Positives = 146/235 (62%), Gaps = 4/235 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGL+ ++DRIIEIG +E+++   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNPQGVVIPDEVIAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LKD+ +F  I     DF +       AHNA FD+GF+NAEL R+NK  +    +IDT
Sbjct: 61  NEHLKDEKNFEDIVDALLDFIDNATIV--AHNANFDIGFLNAELGRVNKPLVSSDNVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LSIARR+ P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+++  G Q  F F 
Sbjct: 119 LSIARRRFPMGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIELIG-GKQGIFSFD 177

Query: 187 TNEDRFFKEEKKTVPNISLLK-RDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             E+      + +      +K R + L  R++K+E + H   I+ +G  A+W+R+
Sbjct: 178 NYENFDVMNVQDSKNVFYTVKMRSQALPQRLSKQEKNMHANLIKKIGDKALWNRF 232


>gi|209883542|ref|YP_002287399.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans
           OM5]
 gi|209871738|gb|ACI91534.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans
           OM5]
          Length = 230

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 98/239 (41%), Positives = 144/239 (60%), Gaps = 10/239 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD+ + DR++EIG VE+ ++  T +T+ V++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDALRGDRLVEIGCVEMFNHMPTGQTYHVYINPE-RDMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+++  EF +F  +  A  I HNA FD+GFIN EL R+ +  +   R++D
Sbjct: 60  STEFLADKPLFAAVADEFLEFIGD--APLIIHNASFDIGFINMELDRLKRAAIPCERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++    Q +   
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIG-ARQSSLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
              E          V  ++   R+ PL +RIT EE + H   + TLG + +W  +  ++
Sbjct: 177 AETERTQIH-----VVEVTRRVREVPLASRITVEEREAHRAFVATLGDHPLWAEFKDAD 230


>gi|56460794|ref|YP_156075.1| DNA polymerase III, epsilon subunit [Idiomarina loihiensis L2TR]
 gi|56179804|gb|AAV82526.1| DNA polymerase III, epsilon subunit [Idiomarina loihiensis L2TR]
          Length = 235

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 85/238 (35%), Positives = 129/238 (54%), Gaps = 13/238 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTG+D  K  RIIEIG VEL++   T   F V++ P  R    EA+++HGI
Sbjct: 1   MRQVVLDTETTGIDPAKGHRIIEIGCVELINRKLTGNHFHVYINPE-RVVEQEAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           T++FL DKP F+ +  +F +F        + HNA FDVGF++AE  RI        D   
Sbjct: 60  TNDFLTDKPVFAQVVQDFIEFIKGSQ--LVIHNAPFDVGFMDAEFSRIRPAVGLTNDFCS 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR   P  RN L++LC+ Y +  S R  HGALLD+ +L+DVY+ M  G + +N
Sbjct: 118 VLDTLQLAREMRPGQRNSLDALCRAYDVDNSARELHGALLDAEILADVYLMMTGGQTALN 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIW 237
                +  +  +   + V +  +  R      R T +E   H + +  + +     +W
Sbjct: 178 L---ASHGKDNQGGSQKVEHQRITNRPALKVLRATADEEALHQERLARVKEEGGHCLW 232


>gi|88703294|ref|ZP_01101010.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71]
 gi|88702008|gb|EAQ99111.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71]
          Length = 240

 Score =  150 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 89/240 (37%), Positives = 128/240 (53%), Gaps = 12/240 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+  +  RIIEIG VE+ +   T R F  ++ P  R     A+++HGI
Sbjct: 1   MRQIVLDTETTGLEVSQGHRIIEIGCVEMENRQLTGRHFHRYINPE-RDIDAGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122
           T  FL DKP FS++  +F DF +      I HNA FD+GF+++EL R +   L       
Sbjct: 60  TATFLADKPVFSAVAKDFIDFVDGAE--LIIHNAPFDIGFLDSELSRWDASALPLAQRCD 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I DTL +AR +HP  RN L++LC RYG+  S R  HGALLD+ +L+DVY+ M     Q  
Sbjct: 118 ITDTLIMARSRHPGQRNSLDALCGRYGVDNSSRELHGALLDAEILADVYLTMTG--GQTA 175

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWDR 239
                N+D      +          R +    + + EEL  H+  + ++   G   +W +
Sbjct: 176 LALGGNDDDNQGRARVRGLRRLPADRVRLPVIQPSDEELAAHEGQLDSIAAAGAEPLWRQ 235


>gi|85714087|ref|ZP_01045076.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A]
 gi|85699213|gb|EAQ37081.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A]
          Length = 230

 Score =  150 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 96/238 (40%), Positives = 138/238 (57%), Gaps = 9/238 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++E+G VE+ +   T +TF  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPVRGDRLVELGCVEIFNRMPTGQTFHCYINPE-RDMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +  EF +F  +  A  I HNA FD+ FINAEL+R+ +  +   R++D
Sbjct: 60  SSEFLADKPLFAQVVDEFLEFIGD--APLIIHNASFDISFINAELERLKRQVIGRERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++    Q     
Sbjct: 118 TLLIARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIG-ARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
                R           +   +R  PL +R+T+ +   H   + TLG+ AIW  +++ 
Sbjct: 177 TETTSRQLG----GTLELPRRQRTVPLASRVTEADRIAHRNFVATLGEKAIWTEFLAQ 230


>gi|85713113|ref|ZP_01044147.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145]
 gi|85693061|gb|EAQ31025.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145]
          Length = 236

 Score =  150 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 84/238 (35%), Positives = 126/238 (52%), Gaps = 12/238 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG++     RIIEIG VEL+D   T   F V++ P  R    EA+ +HGI
Sbjct: 1   MRQIVLDTETTGINPDDGHRIIEIGCVELIDRKPTGNHFHVYINPE-RVVEDEAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSR 122
           T+E+L DKP F+ +   F DF        + HNA FDVG ++AE +R   +     D   
Sbjct: 60  TNEYLADKPVFAQVVDAFIDFIKGSQ--LVIHNAPFDVGHMDAEFKRLGKMYGKTYDYCD 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++D+L +AR K P  RN L++LCK + +  S R  HGALLD+ +L+DVY+ M     Q  
Sbjct: 118 VLDSLQLAREKRPGQRNSLDALCKAFHVDNSARELHGALLDAEILADVYLAMTG--GQTA 175

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIW 237
                       +E   + + ++  R +    R T +E ++H + +  +   G   +W
Sbjct: 176 LSLHGQNQDNENQEPGAIAHQAIKNRPQLKVLRATADEEEQHQQRLAIVKSEGGACLW 233


>gi|83313644|ref|YP_423908.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
 gi|82948485|dbj|BAE53349.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
          Length = 257

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 89/234 (38%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D     R++EIG VEL ++  T   F  +  P  R    EA K+HG+
Sbjct: 28  MREIVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGSVFHRYCNPE-RDMPEEAFKVHGL 86

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL DKP F+ I ++F +F  +     + HNA+FD+ FINAEL R+   PL  SR ID
Sbjct: 87  SADFLSDKPLFAEIVADFLEFIGD--VPLVIHNAEFDMRFINAELTRLGFPPLPMSRSID 144

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +AR++ P ++ +L++LC+R+ I  +HR+KHGALLDS LL++VY++++  G Q     
Sbjct: 145 TVMMARKRFPGAQANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQLIG-GRQPGLEL 203

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
              +            +    +  +P     T+EE   H   +  L KNA+W R
Sbjct: 204 GGGKGNGAGGTANASTHQVTREFREPRPHGPTEEETAAHTAFVAKL-KNAVWLR 256


>gi|182680101|ref|YP_001834247.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635984|gb|ACB96758.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 236

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 101/240 (42%), Positives = 145/240 (60%), Gaps = 9/240 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  +  RIIEIG +E+L    T + F V++ P  R    +A+++HGI
Sbjct: 1   MREIVLDTETTGLDPAEGHRIIEIGCIEILHTIPTGQIFHVYIDPQ-RDIPEDAVRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL  KP F+ I SEF  F  +  A+ +AHNA FD+ F+NAEL  +  +P+D  R++D
Sbjct: 60  TAEFLAGKPVFADIASEFLAFIGD--AKLVAHNAAFDMRFLNAELGLLGLEPIDSERVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++ARR+HP + N L++LC RYGI  + R+KHGALLDS +L+DVY +++  G Q    F
Sbjct: 118 TLALARRRHPGASNSLDALCNRYGIDNTRRTKHGALLDSEILADVYAELLG-GRQAALTF 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245
           +T         +         +R  PL + ++ +E D H   I  LG  AIW  Y+   +
Sbjct: 177 ETATAL----RQDNTHQTPFRQRPVPLESALSSQERDAHRAFIAKLGDKAIWVSYLPQPE 232


>gi|154251704|ref|YP_001412528.1| DNA polymerase III subunit epsilon [Parvibaculum lavamentivorans
           DS-1]
 gi|154155654|gb|ABS62871.1| DNA polymerase III, epsilon subunit [Parvibaculum lavamentivorans
           DS-1]
          Length = 228

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 92/232 (39%), Positives = 136/232 (58%), Gaps = 11/232 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+      R++EIG +EL ++  T + F  ++ P  R     A ++HG+
Sbjct: 1   MREIVLDTETTGISPNDGHRLVEIGCLELFNHVVTGKYFHAYIDPE-RDMPEGAFRIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL+ KP F+ +  +F  F  E     + HNA FD+GFINAEL+RI +  L  SR  D
Sbjct: 60  SSDFLRGKPKFAEVADDFLAFIGE--DPLVIHNAAFDMGFINAELKRIGRPALPVSRATD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IARRK P ++N L++LC+R+G+  S R+KHGALLDS LL++VY+++M  G Q     
Sbjct: 118 TLDIARRKFPGAQNSLDALCRRFGVDNSGRTKHGALLDSELLAEVYLELMG-GRQPGLVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           + +      E       ++   RD  L  R+T+ E   HD  + TLG   +W
Sbjct: 177 QADYAGMKGE------RVTRAPRDIALPPRLTEAEKAAHDAFVATLGGEPLW 222


>gi|76810101|ref|YP_333003.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           1710b]
 gi|121601053|ref|YP_992607.1| DNA polymerase III subunit epsilon [Burkholderia mallei SAVP1]
 gi|124385495|ref|YP_001026592.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10229]
 gi|126441990|ref|YP_001058508.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 668]
 gi|126455280|ref|YP_001065768.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           1106a]
 gi|134282747|ref|ZP_01769450.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305]
 gi|217423557|ref|ZP_03455058.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576]
 gi|226196200|ref|ZP_03791785.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237811761|ref|YP_002896212.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238563612|ref|ZP_00438559.2| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse
           4]
 gi|242318034|ref|ZP_04817050.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1106b]
 gi|251767848|ref|ZP_02268597.2| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20]
 gi|254177751|ref|ZP_04884406.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
           10399]
 gi|254180217|ref|ZP_04886816.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1655]
 gi|254197669|ref|ZP_04904091.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13]
 gi|254199436|ref|ZP_04905802.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH]
 gi|254258454|ref|ZP_04949508.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1710a]
 gi|254298053|ref|ZP_04965506.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           406e]
 gi|254358851|ref|ZP_04975124.1| DNA polymerase III, epsilon subunit [Burkholderia mallei
           2002721280]
 gi|76579554|gb|ABA49029.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1710b]
 gi|121229863|gb|ABM52381.1| DNA polymerase III, epsilon subunit [Burkholderia mallei SAVP1]
 gi|124293515|gb|ABN02784.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC
           10229]
 gi|126221483|gb|ABN84989.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 668]
 gi|126228922|gb|ABN92462.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1106a]
 gi|134245833|gb|EBA45924.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305]
 gi|147749032|gb|EDK56106.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH]
 gi|148027978|gb|EDK85999.1| DNA polymerase III, epsilon subunit [Burkholderia mallei
           2002721280]
 gi|157807726|gb|EDO84896.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           406e]
 gi|160698790|gb|EDP88760.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
           10399]
 gi|169654410|gb|EDS87103.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13]
 gi|184210757|gb|EDU07800.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1655]
 gi|217393415|gb|EEC33436.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576]
 gi|225931786|gb|EEH27788.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237504517|gb|ACQ96835.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238520320|gb|EEP83781.1| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse
           4]
 gi|242141273|gb|EES27675.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1106b]
 gi|243061566|gb|EES43752.1| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20]
 gi|254217143|gb|EET06527.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1710a]
          Length = 253

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/238 (32%), Positives = 113/238 (47%), Gaps = 9/238 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VELL+   T +    ++ P  R + P AL +HG+
Sbjct: 14  MRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGKNLHFYVNPE-RDSDPGALAVHGL 72

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I     DF  +                    L  +       + +ID
Sbjct: 73  TTEFLSDKPKFAEIVDPLRDFVRDAELIIHNAPFDLGFLDAEFALLGLPSFTDHCAGVID 132

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 133 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 192

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                   +         S L          T  EL  H+  +  L K+     +W +
Sbjct: 193 LDEAGDAHRNGDAPRMAFSGLDLP---VLAATDAELAAHEAQLDALDKSAKGVCVWRK 247


>gi|53718980|ref|YP_107966.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           K96243]
 gi|53725133|ref|YP_102525.1| DNA polymerase III subunit epsilon [Burkholderia mallei ATCC 23344]
 gi|126449393|ref|YP_001080124.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10247]
 gi|167719045|ref|ZP_02402281.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei DM98]
 gi|167738046|ref|ZP_02410820.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 14]
 gi|167815230|ref|ZP_02446910.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 91]
 gi|167823638|ref|ZP_02455109.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 9]
 gi|167845182|ref|ZP_02470690.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           B7210]
 gi|167893733|ref|ZP_02481135.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 7894]
 gi|167902185|ref|ZP_02489390.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei NCTC
           13177]
 gi|167910426|ref|ZP_02497517.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 112]
 gi|167918451|ref|ZP_02505542.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           BCC215]
 gi|254188362|ref|ZP_04894873.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|52209394|emb|CAH35339.1| DNA polymerase III, epsilon chain [Burkholderia pseudomallei
           K96243]
 gi|52428556|gb|AAU49149.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
           23344]
 gi|126242263|gb|ABO05356.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC
           10247]
 gi|157936041|gb|EDO91711.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 240

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/238 (32%), Positives = 113/238 (47%), Gaps = 9/238 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VELL+   T +    ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGKNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I     DF  +                    L  +       + +ID
Sbjct: 60  TTEFLSDKPKFAEIVDPLRDFVRDAELIIHNAPFDLGFLDAEFALLGLPSFTDHCAGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                   +         S L          T  EL  H+  +  L K+     +W +
Sbjct: 180 LDEAGDAHRNGDAPRMAFSGLDLP---VLAATDAELAAHEAQLDALDKSAKGVCVWRK 234


>gi|254252714|ref|ZP_04946032.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158]
 gi|124895323|gb|EAY69203.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158]
          Length = 244

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 113/237 (47%), Gaps = 9/237 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ +  +  +F                       L  +       + +ID
Sbjct: 60  TTEFLSDKPKFAEVADQIREFVRGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
             +             +++ L          + EEL  H   +  L K+     +W 
Sbjct: 180 LDDAATVGGAANGQRVSLAALDLP---VLAASDEELAAHHAQLDELDKSVKGTCVWR 233


>gi|319406407|emb|CBI80047.1| DNA polymerase III epsilon chain [Bartonella sp. 1-1C]
          Length = 235

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 101/235 (42%), Positives = 144/235 (61%), Gaps = 4/235 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGL+ ++DRIIEIG +E+++   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLNKESDRIIEIGCIEMVNRYLTGRRFHVYLNPQGVVIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LKD+  F  I     DF +       AHNA FD+GF+NAEL+R+NK  ++   +IDT
Sbjct: 61  NERLKDEKKFDDIVDALLDFIDGATIV--AHNANFDIGFLNAELERVNKPLINSDNVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LSIARR+ P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+++  G Q  F F 
Sbjct: 119 LSIARRRFPMGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIELIG-GKQGIFSFD 177

Query: 187 TNEDRFFKEEKKTVPNISLLK-RDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             E       +        +K R + L  R++K+E D H   I+ +G  A+W+ +
Sbjct: 178 NYESCDVMNVQDNKNAFPTIKIRSQALPQRLSKQEKDMHIDLIKKIGDKALWNHF 232


>gi|288940138|ref|YP_003442378.1| DNA polymerase III subunit epsilon [Allochromatium vinosum DSM 180]
 gi|288895510|gb|ADC61346.1| DNA polymerase III, epsilon subunit [Allochromatium vinosum DSM
           180]
          Length = 240

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 80/237 (33%), Positives = 114/237 (48%), Gaps = 8/237 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+  +  RIIEIG VEL+D   T R F  +L P  R+   EA  +HGI
Sbjct: 1   MRQIVLDTETTGLEPREGHRIIEIGCVELVDRRPTGRNFHEYLNPE-RQIDAEAEAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRI 123
           ++ FL DKP F+       ++           A +  F                 D   +
Sbjct: 60  SNAFLADKPRFAERAERLVEYLRGAELIIHNAAFDVGFLDHEFGLWRGAEAPRIADLCTV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L +AR+ HP  RN L++LCKRY I  SHR+ HGALLD+ +L+DVY+ M  G   +  
Sbjct: 120 TDSLLMARKLHPGQRNGLDALCKRYAIDNSHRTLHGALLDAEILADVYLAMTGGQVSLYL 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIW 237
           G +        E       +   +R +    R T+ EL+ H   +  + K     +W
Sbjct: 180 GGEGMNGSGVGEGPVHRGRLDP-ERPRLRVVRATQTELEAHRVRLDAIWKASGGCVW 235


>gi|332535809|ref|ZP_08411542.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332034787|gb|EGI71325.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 237

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 87/238 (36%), Positives = 132/238 (55%), Gaps = 13/238 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG+D K   RIIEIG VEL++   T   F V++ P  R +  EA+ +HGIT
Sbjct: 4   RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQ-RPSEEEAIDVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRI 123
           +EFL+DKP F  I  EF+D+        + HNA FDVG ++ E   +N+         ++
Sbjct: 63  NEFLRDKPLFHQIAQEFFDYIEGAE--LVIHNAPFDVGHMDNEFALLNQGYPKTETFCQV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR  HP  +N+L++LC+RY +  + R+ HGALLDS +L+DVY+ M     Q   
Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDVDNAKRTLHGALLDSEILADVYLAMTG--GQTKL 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238
               N+D   +++K  +  ++   R   +  R +  E   H+  +  + K     IW 
Sbjct: 179 NLNQNKDDGSEQQKGGIKRLN-SDRAPLVVLRASDTEQSAHEARLDLVNKEGGQCIWR 235


>gi|293603370|ref|ZP_06685798.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292818280|gb|EFF77333.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 239

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 89/240 (37%), Positives = 128/240 (53%), Gaps = 15/240 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTGLD  +  RI+EIG VE+++   T     ++L P+ R + PEAL +HG+
Sbjct: 1   MRQIIFDTETTGLDPAQGHRIVEIGCVEMVNRMSTGNNLHIYLNPD-RDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ +  EF  F        IAHNA FDV F NAEL +  + P+       
Sbjct: 60  TTEFLSDKPRFADVVDEFVKFIQGAE--LIAHNAAFDVKFFNAELAKTGRGPITEYCETV 117

Query: 126 TLS--IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           T S   AR   P  RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M  G   +  
Sbjct: 118 TDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
               N+            + S       +  +   +EL EH+  +  L K+     +W +
Sbjct: 178 DVDDNDGAGSDGIVLAKFDAS-----GLVVIKAADDELAEHEAYLAALDKSVGGECVWRK 232


>gi|134295347|ref|YP_001119082.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
 gi|134138504|gb|ABO54247.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 244

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 112/237 (47%), Gaps = 9/237 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  DR+IEIG VELL+   T     +++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNPRSGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ +  +  DF                          +         +ID
Sbjct: 60  TTEFLSDKPKFAEVADQIRDFVKGAELIIHNAPFDLGFLDAEFARLGLPPFIEHCDGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLAEAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
             +             +++ L          + +EL  H   +  L K+     +W 
Sbjct: 180 LDDAGADGGTANGQRISLASLDLP---VVAASDDELAAHQAQLDELDKSVKGTCVWR 233


>gi|119471754|ref|ZP_01614114.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Alteromonadales bacterium TW-7]
 gi|119445377|gb|EAW26665.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Alteromonadales bacterium TW-7]
          Length = 237

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 86/238 (36%), Positives = 130/238 (54%), Gaps = 13/238 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG+D K   RIIEIG VEL++   T   F V++ P  R    EA+ +HGIT
Sbjct: 4   RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQ-RSIEEEAIDVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID- 125
           +EFL+DKP +  I  EF+D+        + HNA FDVG ++ E   +N+   +       
Sbjct: 63  NEFLRDKPLYRDIAQEFFDYIKGAE--LVIHNAPFDVGHMDNEFALLNQGFPNTHDYCQV 120

Query: 126 --TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             TL +AR  HP  +N+L++LC+RY I  + R+ HGALLDS +L+DVY+ M     Q   
Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDIDNAKRTLHGALLDSEILADVYLAMTG--GQTKL 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238
               N+D   ++++  +  ++  +R   +  R T EE   H+  +  + K     +W 
Sbjct: 179 NLNQNKDDGSEQQQGGIRRLN-SERAPLVVLRATDEEQSAHEARLDLVNKEGGQCLWR 235


>gi|70730658|ref|YP_260399.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf-5]
 gi|68344957|gb|AAY92563.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens Pf-5]
          Length = 249

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 86/247 (34%), Positives = 125/247 (50%), Gaps = 10/247 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 4   RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +EFL  KP F+ +  EF+DF           A +  F         Q    D      I+
Sbjct: 63  NEFLVGKPRFAEVADEFFDFIQGAQLIIHNAAFDVGFINNEFALMGQHERADITQHCTIL 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182

Query: 185 FKTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
              ++     E       I  L   R +    + +  EL EH   ++ + K+    A+W 
Sbjct: 183 GNASDGNGSGEGAGQASEIRRLPADRPRGRIIQASDAELAEHQVRLEIIAKSAGAPALWT 242

Query: 239 RYISSNQ 245
           + + + Q
Sbjct: 243 QLLETQQ 249


>gi|241761459|ref|ZP_04759547.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374366|gb|EER63863.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 234

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 88/238 (36%), Positives = 129/238 (54%), Gaps = 10/238 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGL     DR++EIG VEL++  +T  +F  +  P  R     A  +HG+
Sbjct: 1   MREIVFDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNPE-RPMDAVAESIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D FL DKP F+    E   F     +  +AHNA FD GF+N EL +     +  +R++D
Sbjct: 60  SDAFLADKPLFADKAQELLSFIKL--SPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR KHP +++ L++LC RYGI  SHR KHGALLD+ LL+ +Y+++   G QI    
Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVELTG-GRQIGMAL 176

Query: 186 KTNEDRFFKE----EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             N  +           +    +   + +P     + +EL  H   I  +  N +W R
Sbjct: 177 DDNNGQSDGRLSVPNTVSGLPRNKKVKRQPRPHEASPQELLRHGAFIDKIS-NPVWRR 233


>gi|167562346|ref|ZP_02355262.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis
           EO147]
 gi|167574356|ref|ZP_02367230.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis
           C6786]
          Length = 240

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 80/243 (32%), Positives = 116/243 (47%), Gaps = 9/243 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P GR + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRVIEIGCVELLNRRLTGNNLHFYVNP-GRDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I  E  DF  +                    L  +       + +ID
Sbjct: 60  TTEFLSDKPKFAEIVDELRDFVRDAELIIHNAPFDLGFLDAEFSLLGLPTFTDHCAGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYI 241
                   +         S L          T +EL  H+  +  L K+     +W +  
Sbjct: 180 LDEGGDAHRNGDAPRMAFSGLDLP---VLAATDDELAAHEAQLDALDKSVKGACVWRKEA 236

Query: 242 SSN 244
            S 
Sbjct: 237 GSE 239


>gi|319403493|emb|CBI77072.1| DNA polymerase III epsilon chain [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 235

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 99/235 (42%), Positives = 144/235 (61%), Gaps = 4/235 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGL+ ++DRIIEIG +E+++   T R F V+L P       E + +HG+T
Sbjct: 1   MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNPQDVIIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LKD+  F  I     DF ++      AHNA FD+GF+NAEL+R+NK  ++   +IDT
Sbjct: 61  NERLKDEKKFDDIVDALLDFIDDATIV--AHNANFDIGFLNAELERVNKPLINSDNVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LSIARR+ P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+++  G Q  F F 
Sbjct: 119 LSIARRRFPMGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIELIG-GKQGIFSFD 177

Query: 187 TNED-RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             E       +       ++  R + L  R++K+E D H   I+ +G  A+W+ +
Sbjct: 178 NYESCDVMNVQDNKNAFYTIKTRSQALPQRLSKQEKDMHADLIKKIGDKALWNHF 232


>gi|56550935|ref|YP_161774.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56542509|gb|AAV88663.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 234

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 91/238 (38%), Positives = 130/238 (54%), Gaps = 10/238 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGL     DR++EIG VEL++  +T  +F  +  P  R     A  +HG+
Sbjct: 1   MREIVFDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNPE-RPMDAVAESIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D FL DKP F+    E   F     +  +AHNA FD GF+N EL +     +  +R++D
Sbjct: 60  SDAFLADKPLFADKAQELLSFIKL--SPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR KHP +++ L++LC RYGI  SHR KHGALLD+ LL+ +Y+++   G QI    
Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVELTG-GRQIGMAL 176

Query: 186 KTNEDRFFK--EEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             N            TV  +   K  + +P     + +EL  H   I  +  N +W R
Sbjct: 177 DDNNGPSDGRLSAPNTVSGLPRNKKVKRQPRPHEASPQELLRHGAFIDKIS-NPVWRR 233


>gi|296536098|ref|ZP_06898231.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC
           49957]
 gi|296263574|gb|EFH10066.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC
           49957]
          Length = 241

 Score =  148 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 81/237 (34%), Positives = 127/237 (53%), Gaps = 9/237 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG D    DR++E+ AVE+++   T R F + + P  R    EA K+HG T
Sbjct: 3   RALVLDTETTGFDPLTGDRVLEVAAVEIVNLVPTGRHFHMLIDPE-RDVPEEATKVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E L  KP F+ I     DF  +     IAHNA FD GF++ EL++     LD +R++DT
Sbjct: 62  REMLIGKPKFAEIAPAMLDFLGD--DPIIAHNAPFDFGFLDWELKKAGHKALDRARMVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LC+RYGI  S R+ H ALLD  LL+ VY+++M  G Q      
Sbjct: 120 LALAKKRFPGLPNSLDALCRRYGIDNSMRTAHNALLDVQLLAQVYLELMG-GKQPGLELA 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
           +   R        +   +     +P   + ++ EL  H   +  + K+ +W  ++ +
Sbjct: 179 S---RPAVSTPVVLQIDATPVARQPRPIQPSEAELAAHAAFLAKI-KDPLWAAFLPA 231


>gi|167836205|ref|ZP_02463088.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           MSMB43]
          Length = 241

 Score =  148 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 78/244 (31%), Positives = 118/244 (48%), Gaps = 9/244 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIE+G VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGSNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I  +  DF  +                    L  +       + +ID
Sbjct: 60  TTEFLSDKPKFAEIVDQLRDFVRDAELIIHNAPFDLGFLDAEFALLGLPSFTDHCAGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRYI 241
                   +   +     S L          T EEL  H+  +  L K    + +W +  
Sbjct: 180 LDEAGDAHRNSNEPRMAFSGLDLP---VLAATGEELAAHEAQLDALDKSVKGSCVWRKEA 236

Query: 242 SSNQ 245
           ++ +
Sbjct: 237 AAGE 240


>gi|298293766|ref|YP_003695705.1| DNA polymerase III subunit epsilon [Starkeya novella DSM 506]
 gi|296930277|gb|ADH91086.1| DNA polymerase III, epsilon subunit [Starkeya novella DSM 506]
          Length = 232

 Score =  148 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 101/237 (42%), Positives = 143/237 (60%), Gaps = 8/237 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+    DR++EIG VE+ +   T +TF V+L P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLNPLTGDRLVEIGCVEIFNRIPTGQTFHVYLNPE-RDMPLEAFNVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+++  +F  F        + HNA FD+GFINAEL R+ +  L   R++D
Sbjct: 60  SAEFLSDKPLFAAVVDDFLAFIAG--DPLVIHNAAFDIGFINAELARLARPALTFDRVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TLS+ARR+HP + N L+ L  RYGI  S R+KHGALLDS LL+DVY ++   G Q   G 
Sbjct: 118 TLSLARRRHPGASNRLDDLMNRYGIDGSRRTKHGALLDSELLADVYAELCG-GRQTALGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
              E      E+++    + L+R +PL  R+   ++  H+  + TLG +AIW  Y +
Sbjct: 177 TVVETTVVLAERQSA---APLQRPRPLAPRLDAAQVATHEAFVATLGDSAIWKDYAA 230


>gi|260753374|ref|YP_003226267.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552737|gb|ACV75683.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 234

 Score =  148 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 88/238 (36%), Positives = 129/238 (54%), Gaps = 10/238 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGL     DR++EIG VEL++  +T  +F  +  P  R     A  +HG+
Sbjct: 1   MREIVFDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNPQ-RPMDAVAESIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D FL DKP F+    E   F     +  +AHNA FD GF+N EL +     +  +R++D
Sbjct: 60  SDAFLADKPLFADKAQELLSFIKL--SPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR KHP +++ L++LC RYGI  SHR KHGALLD+ LL+ +Y+++   G QI    
Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVELTG-GRQIGMAL 176

Query: 186 KTNEDRFFKE----EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             N  +           +    +   + +P     + +EL  H   I  +  N +W R
Sbjct: 177 DDNNGQSDGRLSVPNTVSGLPRNKKVKRQPRPHEASPQELLRHGAFIDKIS-NPVWRR 233


>gi|221201955|ref|ZP_03574991.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
 gi|221204915|ref|ZP_03577932.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
 gi|221213892|ref|ZP_03586865.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
 gi|221166069|gb|EED98542.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
 gi|221175772|gb|EEE08202.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
 gi|221178038|gb|EEE10449.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
          Length = 244

 Score =  148 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 79/238 (33%), Positives = 116/238 (48%), Gaps = 9/238 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRIIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I  +  DF                       L  +       + +ID
Sbjct: 60  TTEFLSDKPKFAEIAHQILDFVKGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
             ++            +++ L          T EEL EH   +  L K+     +W +
Sbjct: 180 LDDDAGGAGAANGQRVSLAALDLP---VLAATAEELAEHQAQLDDLDKSVKGACVWRQ 234


>gi|161525206|ref|YP_001580218.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
           17616]
 gi|189350055|ref|YP_001945683.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
           17616]
 gi|160342635|gb|ABX15721.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC
           17616]
 gi|189334077|dbj|BAG43147.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 244

 Score =  148 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 79/238 (33%), Positives = 116/238 (48%), Gaps = 9/238 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARSGDRIIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I  +  DF                       L  +       + +ID
Sbjct: 60  TTEFLSDKPKFAEIAHQILDFVKGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
             ++            +++ L          T EEL EH   +  L K+     +W +
Sbjct: 180 LDDDAGGAGAANGQRVSLAALDLP---VLAATAEELAEHQAQLDDLDKSVKGACVWRQ 234


>gi|114798147|ref|YP_758739.1| DNA polymerase III subunit epsilon [Hyphomonas neptunium ATCC
           15444]
 gi|114738321|gb|ABI76446.1| DNA polymerase III, epsilon subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 232

 Score =  148 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 86/232 (37%), Positives = 135/232 (58%), Gaps = 9/232 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I FD ETTGL+  + DRIIEIGAVE++++  T +TF+  + P G   S   +++ GIT
Sbjct: 6   REIAFDTETTGLNPNEGDRIIEIGAVEMINHIPTGKTFRRLINP-GMAVSEATIRITGIT 64

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ L+DKP F              +A  +AHNA FD GF+N ELQR  +D +   R +DT
Sbjct: 65  DDHLRDKPPFEHPDIIDAFLEFTGDAIIVAHNASFDRGFLNMELQRCGRDIIPEDRWVDT 124

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           + +AR+++P +   L++LCKR+ I++  R+ HGALLDS LL+ VY++++  G    F F+
Sbjct: 125 VQMARKRYPGAPASLDALCKRFDISLESRTFHGALLDSQLLASVYLELLG-GRARAFSFE 183

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
                      +     +  +R  PL + +T  E   H + ++ LG +A+W 
Sbjct: 184 PTLGG------EGYQRPAARQRPAPLASLVTDAERAAHAELVEKLGADALWK 229


>gi|94496604|ref|ZP_01303180.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58]
 gi|94423964|gb|EAT08989.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58]
          Length = 230

 Score =  148 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 88/232 (37%), Positives = 129/232 (55%), Gaps = 7/232 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTG D    DR++EIG +EL++   T RTF  +  P  R     A  +HG+
Sbjct: 1   MREIIFDTETTGFDPASGDRMVEIGCIELVNRVPTGRTFHAYYHPE-RDMPAAAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL   P FS    E  DF  +  +  +AHNA+FD GF+N EL       +   R+ID
Sbjct: 60  SADFLAKHPVFSLGALELLDFLED--SPLVAHNARFDFGFLNHELTLCGHPQVGMHRMID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T++IAR+ HP +++ L++LC RYGI  SHR KHGALLD+ LL+ +YI++   G QI  G 
Sbjct: 118 TVAIARQLHPGAKHSLDALCTRYGIDRSHRVKHGALLDAELLAQLYIELTG-GRQIGLGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
              E +     + T   +    R        + +EL+ H   + TL +  +W
Sbjct: 177 AQEEAKEIVRVELTESPVVRPVRPA-RVFMASAQELERHAAFVATLDR-PLW 226


>gi|114571517|ref|YP_758197.1| DNA polymerase III subunit epsilon [Maricaulis maris MCS10]
 gi|114341979|gb|ABI67259.1| DNA polymerase III, epsilon subunit [Maricaulis maris MCS10]
          Length = 230

 Score =  148 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 91/234 (38%), Positives = 127/234 (54%), Gaps = 9/234 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD    DR+ E+G VE++D+  T +TF  ++ P  R    E +++ G+
Sbjct: 1   MREIVFDTETTGLDPNTGDRVTELGCVEIIDFIPTGKTFHAYVNPQ-RSVPKEVVEITGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F  +  +F +F  +      AHNA FD GFIN EL R+  D     R  D
Sbjct: 60  TTEFLADKPLFDEVGPQFVEFVGDATMV--AHNAPFDRGFINMELARLGLDIYPDDRFKD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T  IAR K P S   L++LCKR+ I++  R KHGAL+DS LL++VY+++M  G       
Sbjct: 118 TARIARAKFPGSYVSLDALCKRFDISLDTRDKHGALIDSLLLAEVYLELMG-GRTRALDL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                         V   +   R +PL  R T  E   H   +  +G+NA+W +
Sbjct: 177 S----GQGSGGGGKVVFPARSPRAEPLTGRQTDSERAAHAAFVDEMGENALWKK 226


>gi|53805082|ref|YP_113230.1| DNA polymerase III subunit epsilon [Methylococcus capsulatus str.
           Bath]
 gi|53758843|gb|AAU93134.1| DNA polymerase III, epsilon subunit [Methylococcus capsulatus str.
           Bath]
          Length = 267

 Score =  148 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 94/270 (34%), Positives = 128/270 (47%), Gaps = 40/270 (14%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD K   RIIEIG VELLD   T   F V++ P  R+    A+++HG+
Sbjct: 1   MRQIVLDTETTGLDPKAGHRIIEIGCVELLDRRITQNRFHVYINPE-REIDAGAIEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           T+EFL   P F +I  +F +F +      I HNA FDVGF++ EL           D   
Sbjct: 60  TNEFLAGMPVFRNIADDFLNFISGAE--LIIHNAAFDVGFLDHELSLLGENRGRIADYCG 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I DTL++AR+ HP  RN L++LCKRY +  S R  HGALLD+ +L+DVY+ M  G   + 
Sbjct: 118 ICDTLAMARKNHPGQRNSLDALCKRYNVDNSRRELHGALLDAEILADVYLAMTGGQITML 177

Query: 183 FGFKTNEDRFFK-----------------------------EEKKTVPNISLLKRDKPLF 213
                                                    E ++  P      R +   
Sbjct: 178 LEADAESGGARGSDGGFERFVVNPSAGSVHAQPGPLGANSVEREQAAPRSVDTARPRLRV 237

Query: 214 TRITKEELDEHDKTIQTLGK----NAIWDR 239
            R T EE + H   ++ + K    N +W R
Sbjct: 238 IRSTPEEAEAHAARLEAIAKASSGNCLWSR 267


>gi|186475632|ref|YP_001857102.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815]
 gi|184192091|gb|ACC70056.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815]
          Length = 249

 Score =  148 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 79/237 (33%), Positives = 115/237 (48%), Gaps = 10/237 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRIIEIGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I     DF  +                    L  +         +ID
Sbjct: 60  TTEFLSDKPKFAEIADTLRDFIQDAELIIHNAPFDIGFLDAEFALLGLPPFSQYCGEVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A+   P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVRAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
                       K V    +L   + +    T +EL EH+  +  L K+    ++W 
Sbjct: 180 LGETAADDAGGAKRV----MLDTLELIVLAATDDELAEHEALLDGLDKSLKGTSVWR 232


>gi|87119404|ref|ZP_01075302.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Marinomonas sp. MED121]
 gi|86165795|gb|EAQ67062.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Marinomonas sp. MED121]
          Length = 235

 Score =  148 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 86/237 (36%), Positives = 121/237 (51%), Gaps = 8/237 (3%)

Query: 6   KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            MR+I+ D ETTG+D K   RIIEIG VE+LD   T   F V++ P+ R+   EA ++HG
Sbjct: 1   MMRQIILDTETTGIDPKQGHRIIEIGCVEMLDRKLTKNHFHVYINPD-RQVEEEAFQVHG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+DEFL DKP F  +  +F ++                                D   + 
Sbjct: 60  ISDEFLADKPRFHQVAQDFLNYIQGAELVIHNAPFDVGFIDHEFAKLGNFPKVADICSVF 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL+ AR KHP  +N+L++LCKRYGI  SHR  HGALLDS +L+DVY+ M     Q + G
Sbjct: 120 DTLAFARSKHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLLMTG--GQTSLG 177

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWD 238
              +ED        T+  +S   R      +  + ELD H++ +  + K A   +W 
Sbjct: 178 LGDDEDGADGMSVPTIRRLSP-DRPMIKVLKANQAELDLHNERLDLIEKQAGKVLWR 233


>gi|152986464|ref|YP_001348839.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PA7]
 gi|150961622|gb|ABR83647.1| DNA polymerase III, epsilon subunit [Pseudomonas aeruginosa PA7]
          Length = 246

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 82/240 (34%), Positives = 121/240 (50%), Gaps = 8/240 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+      RIIEIG VEL     T R F V+L P+ R+    A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRI 123
           T+E+LKDKP F  + ++F++F           A +  F         Q+   D  +   +
Sbjct: 60  TNEYLKDKPRFREVANDFFEFIRGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYCTV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR +HP  RN+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M  G + ++ 
Sbjct: 120 LDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSLSL 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDR 239
                E         +        R      R + EEL  H   +  + K+A    +W +
Sbjct: 180 AGSGAEGDGSGRPMVSPIRRLDPARVATPVLRASAEELAAHAARLAVIEKSAGGPSLWAQ 239


>gi|209695823|ref|YP_002263753.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238]
 gi|208009776|emb|CAQ80082.1| DNA polymerase III, epsilon chain [Aliivibrio salmonicida LFI1238]
          Length = 243

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 94/240 (39%), Positives = 134/240 (55%), Gaps = 16/240 (6%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IV D ETTG++       +  RIIEIGAVE+++   T   F V++ P+ R    EA+ 
Sbjct: 10  RIIVLDTETTGMNLSGGPIYEGHRIIEIGAVEIINRKLTGNHFHVYIKPD-RLIDLEAID 68

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118
           +HGITDEFL  KP +  I  EF  F        +AHNA FDVGF++ E  ++NK      
Sbjct: 69  VHGITDEFLYGKPEYKDIHDEFLAFIKGAE--LVAHNAPFDVGFMDYEFSKLNKLIGTTD 126

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              +I DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 127 QYCKITDTLAMAKKISPGKRNNLDVLCGRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 186

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           + ++F    NE    +E    +     L R      R T +EL+ H+K +  +G   +W 
Sbjct: 187 TSLSFSAGGNESDSSEESINRLN----LGRKGLKVLRATADELEAHEKRLDIVGDACLWR 242


>gi|119476004|ref|ZP_01616356.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2143]
 gi|119450631|gb|EAW31865.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2143]
          Length = 236

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 81/232 (34%), Positives = 117/232 (50%), Gaps = 6/232 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTGL+  +  RIIEIG VEL+D   T R +  ++ P  R+    A+++HGI
Sbjct: 1   MRQVVLDTETTGLEPSQGHRIIEIGCVELVDRKLTGRHYHQYINPK-REIDTGAMEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA--HNAKFDVGFINAELQRINKDPLDPSRI 123
           T+EFL DKP FS +  EF DF             +  F          +          +
Sbjct: 60  TNEFLADKPLFSQVAQEFLDFVTGAELIIHNAPFDIGFINSEFKLLDSKSPGTMESYCGV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR+KHP  RN L++LC RY +  S R  HGALLDS +L+DVY+ M  G +++  
Sbjct: 120 VDTLVMARQKHPGQRNSLDALCSRYEVDNSQRDLHGALLDSEILADVYLLMTGGQTKLLL 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
               NE+     +           R          EEL EH++ +Q + K +
Sbjct: 180 AGDDNEEGSGHSDNN--IRRLSTNRQPLKIILANDEELAEHEERMQKIDKAS 229


>gi|15887364|ref|NP_353045.1| DNA polymerase III subunit epsilon [Agrobacterium tumefaciens str.
           C58]
 gi|15154863|gb|AAK85830.1| DNA polymerase III, epsilon chain [Agrobacterium tumefaciens str.
           C58]
          Length = 232

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 110/234 (47%), Positives = 157/234 (67%), Gaps = 4/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGL+SK DR+IEIG +EL+++  T RT  +++ P  RK  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLESKLDRVIEIGGIELINHFPTGRTLHLYISPEDRKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDKP F+ +  +  +FF+       AHNA FD+GFINAE  R+  +P+    + DT
Sbjct: 61  DEFLKDKPKFAEVIDQIREFFDGARWV--AHNATFDMGFINAEFARLGIEPVSAELVTDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRK+P   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+M+  G Q   GF 
Sbjct: 119 LSLARRKNPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIG-GRQTALGFG 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           +   +     ++ VP ++ L+R   L +R+  + +  H K +  +G  AIW+RY
Sbjct: 178 SAARQETIIIEEDVP-LAPLQRPSALPSRLDADTIAAHGKLVLGMGDKAIWNRY 230


>gi|209966072|ref|YP_002298987.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW]
 gi|209959538|gb|ACJ00175.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW]
          Length = 227

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 86/232 (37%), Positives = 133/232 (57%), Gaps = 11/232 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D+   DR++EIG VEL+++  T RT+  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGIDALNGDRVVEIGCVELMNHVATGRTYHQYINPE-RDMPIEAFNVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL  +P+F+ I   F DF  +  +  + HNA FDVGF+NAEL R+    L  +R ID
Sbjct: 60  STEFLSGQPTFAEIVGPFLDFIQD--SPLVIHNATFDVGFLNAELTRLGMRTLPAARAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +ARR+ P +   L++LC+R+ I  S RS HGALLD+ LL++VY++++  G Q +   
Sbjct: 118 TVVLARRRFPGAPASLDALCRRFEIDNSARSYHGALLDAQLLAEVYLELLG-GRQPDLVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                +     +   P      R +P       EEL+ H+  ++      +W
Sbjct: 177 APTGAQAAASFRTDRP------RREPRPHAPLPEELEAHEAFLKGFKTPPLW 222


>gi|107022359|ref|YP_620686.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia AU
           1054]
 gi|116689306|ref|YP_834929.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia
           HI2424]
 gi|105892548|gb|ABF75713.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647395|gb|ABK08036.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
          Length = 244

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 9/243 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ +  +  DF  +                       +         +ID
Sbjct: 60  TTEFLSDKPKFAEVAHQILDFVKDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYI 241
             +             +++ L          +++EL  H   +  L K+     +W +  
Sbjct: 180 LDDAGADGGAANGKRVSLAALD---LAVVTASEDELAAHQAQLDELDKSVKGTCVWRQPA 236

Query: 242 SSN 244
            ++
Sbjct: 237 DTD 239


>gi|167582322|ref|ZP_02375196.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           TXDOH]
 gi|167620419|ref|ZP_02389050.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis Bt4]
          Length = 241

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 120/243 (49%), Gaps = 9/243 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIE+G VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL+DKP F+ I  +  DF  +                    L  +       + +ID
Sbjct: 60  TTEFLRDKPKFADIVDQLRDFVRDAELIIHNAPFDLGFLDAEFALLGLPAFSDHCAGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYI 241
                   ++  +     S L          T EEL +H+  +  L K+     +W +  
Sbjct: 180 LDEAGDAHRKGDEPRMAFSGLDLP---VLAATDEELADHEAQLDALDKSVKGACVWRKEA 236

Query: 242 SSN 244
           + +
Sbjct: 237 AVD 239


>gi|119775015|ref|YP_927755.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119767515|gb|ABM00086.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 242

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 86/248 (34%), Positives = 128/248 (51%), Gaps = 20/248 (8%)

Query: 2   IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+I+ D ETTG++          RIIEIG VE+++   T RTF  ++ P G+  
Sbjct: 3   IISNAERQIILDTETTGMNQGAGAVYLGHRIIEIGCVEVVNRRLTGRTFHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+ +HGIT++ +  +P F  I   F DF        +AHNA FD+ FIN E   +  
Sbjct: 62  DEEAIAVHGITNDRVAGEPRFHEIVGGFLDFIRGAE--LVAHNASFDMSFINHEFSMLVP 119

Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 D   ++D+L+IA+  HP  +N+L++LCKRYGI  + R+ HGALLD+ +L+DVY+
Sbjct: 120 QGPKVEDICTVLDSLAIAKFLHPGQKNNLDALCKRYGIDNTRRTYHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M     Q  F    +E    +     +       R      R T +EL  H+K +  +G
Sbjct: 180 VMTG--GQTKFNLHADEGSQEQGGIIRLD----SNRPSLKVVRATADELGNHEKRLDLVG 233

Query: 233 K--NAIWD 238
           K    +W 
Sbjct: 234 KSGKCLWR 241


>gi|149185255|ref|ZP_01863572.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21]
 gi|148831366|gb|EDL49800.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21]
          Length = 229

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 92/233 (39%), Positives = 129/233 (55%), Gaps = 7/233 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD +  DR++EIG VE++    T  TF  +  P  R     A  +HG+
Sbjct: 1   MREIVFDTETTGLDPRTGDRMVEIGCVEMVSLVPTGNTFHAYYNPE-RDMPAGAEAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  FL DKP F     E  DF  +     IAHNA FD GF+NAEL    ++ +  SR+ID
Sbjct: 60  SAAFLSDKPLFRDTAHELLDFIGDA--PLIAHNAGFDFGFLNAELALCEREAVCMSRMID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+++A+++HP ++  L++LC RYGI  SHR KHGALLD+ LL+ VY++ + GG QI    
Sbjct: 118 TVALAKKRHPGAKLSLDALCTRYGIDRSHRVKHGALLDAELLAQVYVE-LKGGRQIGLEL 176

Query: 186 KTNEDR-FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                      E   V       R +      T EEL  H + +  + +N +W
Sbjct: 177 AAETAAVEITTEVVAVRKAPDGPRREARPHAPTPEELARHREFMAGI-ENPLW 228


>gi|296284843|ref|ZP_06862841.1| DNA polymerase III epsilon subunit [Citromicrobium bathyomarinum
           JL354]
          Length = 240

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 88/237 (37%), Positives = 131/237 (55%), Gaps = 8/237 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTG+D +   R++EIG VEL+D   T  TF  +  P  R    EA  +HG+
Sbjct: 8   MREIIFDTETTGIDPRQGHRMVEIGCVELVDRMPTGETFHAYYNPE-RDMPAEAEAIHGL 66

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL DKP F+    EF DF  +     +AHNA FD  F+NAEL+   ++P+  +R ID
Sbjct: 67  SAQFLADKPRFADAVDEFLDFVRDDM--LVAHNAGFDFAFLNAELELCTREPICLTRKID 124

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFG 184
           TL +ARRK+P  ++ L++LC RYG+  SHR  HGALLD+ LL+ VYI++       +   
Sbjct: 125 TLEMARRKNPGGKHSLDALCSRYGVDRSHRVFHGALLDAELLAQVYIELTGGRQIAMGLI 184

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            +  E      E +    +    R +        +++EL  H   +  + +  IW R
Sbjct: 185 GELAEGDTAPAEPELAAMLPSGDRPRRPARPHSASEQELAAHAAFLDRMTR-PIWHR 240


>gi|254419681|ref|ZP_05033405.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3]
 gi|196185858|gb|EDX80834.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3]
          Length = 241

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 84/235 (35%), Positives = 128/235 (54%), Gaps = 7/235 (2%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG D K  DR+IE+G +E+ D   T RTF  F+ P  R   P+A+++HGIT
Sbjct: 3   REIVLDTETTGFDPKTGDRLIEVGCIEIQDLLPTGRTFHRFVNPE-RLIPPDAIRVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +KD P F  I  +  +F  +      AHNA FD  FI+ E +   +     +R IDT
Sbjct: 62  DDKVKDAPKFHEIADDLIEFIGDAPMI--AHNAGFDRNFIDFEYKLCGRPITGETRWIDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +A+ + P   N L++LCKR+ +++  R+ HGAL+D+ LL++VY++ + GG +      
Sbjct: 120 LKLAQARFPGMPNSLDALCKRFKVSLVERTLHGALIDARLLAEVYLE-LRGGKERVLDLS 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-LGKNAIWDRY 240
           +            VP  +   R +PL  R + EE   H   +   L   A+W+ Y
Sbjct: 179 SAPVAGRSAG-VAVPTAAYGPRPQPLALRSSPEEQAAHIAFLAKALKDRALWEAY 232


>gi|317402511|gb|EFV83078.1| DNA polymerase subunit III [Achromobacter xylosoxidans C54]
          Length = 240

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 89/240 (37%), Positives = 128/240 (53%), Gaps = 15/240 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTGLD  +  RI+EIG VEL++   T     ++L P+ R + PEAL +HG+
Sbjct: 1   MRQIIFDTETTGLDPAQGHRIVEIGCVELVNRMATGNNLHIYLNPD-RDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ +  EF  F        IAHNA FDV F NAEL +  + P+       
Sbjct: 60  TTEFLSDKPRFAEVADEFVKFIQGAE--LIAHNAAFDVKFFNAELAKTGRGPITEYCATV 117

Query: 126 TLS--IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           T S   AR   P  RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M  G   +  
Sbjct: 118 TDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
               N+             ++          + ++ EL EH+  +  L K+     +W +
Sbjct: 178 DVDDNDTGAGGGVV-----LARFDASGLPVVKASEAELAEHETYLAALDKSVGGECVWRK 232


>gi|134095496|ref|YP_001100571.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans]
 gi|133739399|emb|CAL62449.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans]
          Length = 234

 Score =  147 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/239 (39%), Positives = 133/239 (55%), Gaps = 16/239 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +  DRIIEIG VEL+D   T   F  ++ P  R +   AL +HG+
Sbjct: 1   MRQIVLDTETTGLNPRSGDRIIEIGCVELIDRRLTGNNFHHYINPE-RDSEEGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--I 123
           T EFL DKP F+ I  EF D+ +        HNA FDVGF++AEL+R+           I
Sbjct: 60  TTEFLSDKPKFAEIVDEFRDYISGAEVV--IHNAPFDVGFLDAELKRVEMPLFKDHVGGI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL  A+  HP  RN L++LC RYG++ +HR+ HGALLD+ LL++VY+ M  G + ++ 
Sbjct: 118 LDTLQQAKELHPGKRNSLDALCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLSM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                +        + V    +L +        T EEL EH+  +Q+L K      +W 
Sbjct: 178 DLGGQDADSDGIALEVVAIADILLQP------ATAEELAEHELLMQSLDKEVKGQCLWR 230


>gi|83720697|ref|YP_443303.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           E264]
 gi|257139540|ref|ZP_05587802.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           E264]
 gi|83654522|gb|ABC38585.1| DNA polymerase III, epsilon subunit [Burkholderia thailandensis
           E264]
          Length = 241

 Score =  147 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 120/243 (49%), Gaps = 9/243 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIE+G VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL+DKP F+ I  +  DF  +                    L  +       + +ID
Sbjct: 60  TTEFLRDKPKFADIVDQLRDFVRDAELIIHNAPFDLGFLDAEFALLGLPAFSDHCAGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYI 241
                   ++  +     S L          T EEL +H+  +  L K+     +W +  
Sbjct: 180 LDEAGDAHRKGDEPQMAFSGLDLP---VLAATDEELADHEAQLDALDKSVKGACVWRKEA 236

Query: 242 SSN 244
           + +
Sbjct: 237 AVD 239


>gi|114321140|ref|YP_742823.1| DNA polymerase III, epsilon subunit [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227534|gb|ABI57333.1| DNA polymerase III, epsilon subunit [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 243

 Score =  147 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 89/241 (36%), Positives = 132/241 (54%), Gaps = 13/241 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S+ DR+IEIG VEL+D   T   F  +L P+ R+   EA+++HGI
Sbjct: 1   MRQIVLDTETTGLEWSQGDRVIEIGCVELVDRRPTGNNFHQYLNPD-REVPQEAVEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           T++FL DKP F  +   F ++        + HNA FDVGF++ EL    R      D + 
Sbjct: 60  TNDFLADKPRFHEVAERFVEYIRGSE--LVIHNAAFDVGFLDYELSRLGRGWGRVEDFAS 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR++HP  RN L++LCKRY +  + R  HGALLD+ +L+DVY+ M  G   + 
Sbjct: 118 VLDTLLLARQRHPGQRNSLDALCKRYDVDNTQRELHGALLDARILADVYLAMTGGQKAL- 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
           F     E +  + E   +  +    R +    R  + E   H+  +  + K       W 
Sbjct: 177 FTLDEEEAQAHEGEGGGIRRLP-SDRPRLAVVRAGEAERRAHEALLDRIDKASGGGCRWR 235

Query: 239 R 239
           R
Sbjct: 236 R 236


>gi|78065897|ref|YP_368666.1| DNA polymerase III subunit epsilon [Burkholderia sp. 383]
 gi|77966642|gb|ABB08022.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
          Length = 244

 Score =  147 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 113/237 (47%), Gaps = 9/237 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ + ++  DF  +                       +         +ID
Sbjct: 60  TTEFLSDKPKFAEVANQIRDFVQDAELIIHNAPFDLGFLDAEFARLDLPPFTKHCGGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
             +             +++ L          + +EL  H   +  L K+     +W 
Sbjct: 180 LDDAGADGGAGNGQRVSLAALDLP---VVAASDDELAAHQAQLDELDKSVKGTCVWR 233


>gi|59712542|ref|YP_205318.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114]
 gi|59480643|gb|AAW86430.1| DNA polymerase III epsilon subunit [Vibrio fischeri ES114]
          Length = 243

 Score =  147 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 93/240 (38%), Positives = 136/240 (56%), Gaps = 16/240 (6%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IV D ETTG++       +  RI+EIGAVE+++   T   F V++ P+ R    EA+ 
Sbjct: 10  RIIVLDTETTGMNFSGGPVYEGHRIVEIGAVEIINRKLTGNHFHVYIKPD-RLIDLEAID 68

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118
           +HGITDEFL DKP +  I  EF +F        +AHNA FDVGF++ E  ++NK      
Sbjct: 69  VHGITDEFLYDKPEYKDIHDEFLEFIKGAE--LVAHNAPFDVGFMDYEFSKLNKLIGTTD 126

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              +I DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 127 QYCKITDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 186

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           + ++F    N     +E  K +       R      R T +EL+ H+K +  +G   +W 
Sbjct: 187 TSLSFSSGENSSDSDEETIKRLN----SGRKGLKVLRATADELEAHEKRLDIVGDACLWR 242


>gi|260775260|ref|ZP_05884157.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608441|gb|EEX34606.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 246

 Score =  147 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 89/247 (36%), Positives = 135/247 (54%), Gaps = 18/247 (7%)

Query: 4   KNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
            N  R +V D ETTG++       +  RIIEIGAVE+++   T R F V++ P+ R+  P
Sbjct: 7   SNHNRIVVLDTETTGMNREGGPHYQGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQP 65

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-- 115
           +A+++HGITDEFL DKP +  +  EF +F        +AHNA FD GF++ E   ++   
Sbjct: 66  DAVEVHGITDEFLVDKPEYQDVHKEFLEFIKGAE--LVAHNAPFDTGFMDYEFNMLDPGI 123

Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M
Sbjct: 124 GKTDDYCKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLM 183

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233
             G + + F     +     E  K         R      R T +EL+ H   +  + K 
Sbjct: 184 TGGQTSLQFNSGNADGNVGGESIKRAAGG----RKSLKVIRATADELEAHQNRLDLVEKS 239

Query: 234 -NAIWDR 239
            + +W +
Sbjct: 240 GSCLWRQ 246


>gi|90416118|ref|ZP_01224051.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90332492|gb|EAS47689.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 239

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 93/238 (39%), Positives = 141/238 (59%), Gaps = 11/238 (4%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++  D RIIEIG VEL+    T R +  ++ P  RK    A+++HGI
Sbjct: 1   MRQIVLDTETTGLETSQDHRIIEIGCVELVGRKLTGRHYHQYVNPQ-RKVDVGAMEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSR 122
           TD+FL+DKP F ++  EF +F +  +   + HNA FDVGFIN E+ +     +      R
Sbjct: 60  TDQFLEDKPLFETVAREFLEFVDGAD--LVIHNAPFDVGFINHEIAKLNGAYQAIESGCR 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IIDTL++AR+KHP  +N+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M  G   +N
Sbjct: 118 IIDTLALARQKHPGQKNNLDALCKRYGVDNSQRDLHGALLDAEILADVYLLMTGGQVNLN 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIW 237
              +   D      +  +  ++   R        ++EE++ H + ++ + K   N +W
Sbjct: 178 ISGQQASDGGQDNSRSGIRRLAQ-DRQPLRVVTASREEIERHQQKLEAINKSSGNCLW 234


>gi|49082166|gb|AAT50483.1| PA1816 [synthetic construct]
          Length = 247

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 82/240 (34%), Positives = 120/240 (50%), Gaps = 8/240 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+      RIIEIG VEL     T R F V+L P+ R+    A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRI 123
           T+E+LKDKP F  + ++F++F           A +  F         Q+   D  +   +
Sbjct: 60  TNEYLKDKPRFREVANDFFEFIRGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYCSV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR +HP  RN+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M  G + ++ 
Sbjct: 120 LDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSLSL 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDR 239
                E         +        R      R   EEL  H   +  + K+A    +W +
Sbjct: 180 AGSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLWAQ 239


>gi|15597013|ref|NP_250507.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO1]
 gi|107101248|ref|ZP_01365166.1| hypothetical protein PaerPA_01002281 [Pseudomonas aeruginosa PACS2]
 gi|218892230|ref|YP_002441097.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa LESB58]
 gi|254234910|ref|ZP_04928233.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719]
 gi|296389793|ref|ZP_06879268.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAb1]
 gi|313110514|ref|ZP_07796399.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016]
 gi|9947801|gb|AAG05205.1|AE004608_4 DNA polymerase III, epsilon chain [Pseudomonas aeruginosa PAO1]
 gi|7229492|gb|AAF42851.1| mismatch repair protein MutD [Pseudomonas aeruginosa PAO1]
 gi|126166841|gb|EAZ52352.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719]
 gi|218772456|emb|CAW28238.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa LESB58]
 gi|310882901|gb|EFQ41495.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016]
          Length = 246

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 82/240 (34%), Positives = 120/240 (50%), Gaps = 8/240 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+      RIIEIG VEL     T R F V+L P+ R+    A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRI 123
           T+E+LKDKP F  + ++F++F           A +  F         Q+   D  +   +
Sbjct: 60  TNEYLKDKPRFREVANDFFEFIRGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYCSV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR +HP  RN+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M  G + ++ 
Sbjct: 120 LDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSLSL 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDR 239
                E         +        R      R   EEL  H   +  + K+A    +W +
Sbjct: 180 AGSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLWAQ 239


>gi|170697939|ref|ZP_02889022.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170137105|gb|EDT05350.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 244

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 112/237 (47%), Gaps = 9/237 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  DR+IEIG VELL+   T     +++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL+DKP F+ +  +  DF                          +         +ID
Sbjct: 60  TTEFLRDKPKFAEVVDQIRDFVKGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
             +             +++ L          + +EL  H   +  L K+     +W 
Sbjct: 180 LDDAGADGSAANGQRVSLASLVLP---VLAASDDELAAHQTQLDELDKSVKGTCVWR 233


>gi|77458414|ref|YP_347919.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf0-1]
 gi|77382417|gb|ABA73930.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens Pf0-1]
          Length = 252

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 86/247 (34%), Positives = 124/247 (50%), Gaps = 11/247 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 4   RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIAVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +EFL  KP F+ +  EF++F N         A +  F         Q    D      I+
Sbjct: 63  NEFLVGKPRFAEVADEFFEFINGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCTIL 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182

Query: 185 FKTNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
              ++     E      T        R      R T+ EL EH   ++ + K+    A+W
Sbjct: 183 GNASDGNGTGEGADNSATEIRRLPADRQPGRIIRATEAELAEHQVRLEIIAKSAGAPALW 242

Query: 238 DRYISSN 244
            + + + 
Sbjct: 243 TQLLEAE 249


>gi|119385539|ref|YP_916595.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119375306|gb|ABL70899.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 239

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 96/240 (40%), Positives = 144/240 (60%), Gaps = 5/240 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVEL+++  T RTF V++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPDTGDRIVEIGAVELMNHLPTGRTFHVYINPE-RPMPQEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I ++F  F  +   + + HNA FD+ F+NAEL+ +    +  SR +D
Sbjct: 60  GDDFLRDKPKFAEIAADFVAFIGDDA-KLVIHNASFDMKFLNAELRMVGHATMPYSRAVD 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IAR   P ++N L++LC+R+ I  S+R+ HGALLDS LL++VY+  + GG Q     
Sbjct: 119 TLEIARSMFPGAQNSLDALCRRFRIDNSNRTLHGALLDSELLAEVYLA-LRGGRQPGLVL 177

Query: 186 KTNE-DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
           ++           +        +R +PL  RIT+ E + H   +  +G+ A+W RY  +N
Sbjct: 178 ESGPMHGGTGTGAQAEGGTPRGQRPRPLAPRITEAEAEAHAAFVAKMGEKAVWLRYGDAN 237


>gi|329891169|ref|ZP_08269512.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC
           11568]
 gi|328846470|gb|EGF96034.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC
           11568]
          Length = 241

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 89/235 (37%), Positives = 137/235 (58%), Gaps = 10/235 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG D K  DR+IE+G +E+ D   T RTF  F+ P  R   P+A+K+HGIT
Sbjct: 3   REIVLDTETTGFDPKTGDRLIEVGCIEIEDLLPTGRTFHRFINPE-RLIPPDAIKVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +KD P F  +  +  +F  +  A  IAHNA FD  FI+ E+ RI + P    R IDT
Sbjct: 62  DDKVKDAPKFHEVVDDLMEFLGD--APLIAHNANFDRNFIDFEIGRIGRTPPPQDRWIDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LCKRY I++  R+ HGAL+D+ LL++VY++ + GG +      
Sbjct: 120 LALAQKRFPGMANSLDALCKRYKISLVERTLHGALIDARLLAEVYLE-LRGGKERALDLT 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ-TLGKNAIWDRY 240
           +          +T   ++   R +PL + +T EE   H   ++ T+   ++W  Y
Sbjct: 179 ST----RGGAAETAERVAYGARPRPLPSFVTAEEEAAHLAFLKATIKDFSLWAGY 229


>gi|116049766|ref|YP_791427.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584987|gb|ABJ11002.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 246

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 82/240 (34%), Positives = 120/240 (50%), Gaps = 8/240 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+      RIIEIG VEL     T R F V+L P+ R+    A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRI 123
           T+E+LKDKP F  + ++F++F           A +  F         Q+   D  +   +
Sbjct: 60  TNEYLKDKPRFREVANDFFEFIRGAQLIIHNAAFDIGFINNEFALLGQQDRSDVSEYCSV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR +HP  RN+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M  G + ++ 
Sbjct: 120 LDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSLSL 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDR 239
                E         +        R      R   EEL  H   +  + K+A    +W +
Sbjct: 180 AGSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLWAQ 239


>gi|148546962|ref|YP_001267064.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1]
 gi|148511020|gb|ABQ77880.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1]
          Length = 252

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 81/244 (33%), Positives = 120/244 (49%), Gaps = 8/244 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+   +  RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDP 117
           + +HGITD FL  KP F  +  EF+ F           A +  F         Q+   D 
Sbjct: 60  INVHGITDAFLVGKPRFGDVAEEFFQFIQGATLVIHNAAFDVGFINNEFALLGQQDRADI 119

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                I+DTL +AR +HP  RN L++LCKRY I  S R  HGALLDS LL+DVY+ M  G
Sbjct: 120 SQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGG 179

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA-- 235
            + ++      +     +         ++ R        + EEL+ H + +  + K+A  
Sbjct: 180 QTSLSLAGNGADAEEDGQGAGGSEIRRIVGRAPGRVIMASAEELEAHAERLAAIAKSAGG 239

Query: 236 --IW 237
             +W
Sbjct: 240 PSLW 243


>gi|119944269|ref|YP_941949.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
 gi|119862873|gb|ABM02350.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
          Length = 239

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 87/249 (34%), Positives = 132/249 (53%), Gaps = 20/249 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG++         RIIEIG VE+++   T R F V++ P+ R+ 
Sbjct: 1   MNTEKMIRQVVLDTETTGMNKGGTIYVGHRIIEIGCVEVINRRLTGRHFHVYVKPD-REI 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--- 112
            PEA+ +HGITDEFL DKP+FS I  EF +F        + HNA FDVGF++ E +    
Sbjct: 60  DPEAIAVHGITDEFLHDKPAFSDIADEFIEFIKGAE--LVIHNAPFDVGFMDQEFRFLNK 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             K   + S I DTL +AR+ +P  R  L++LC+  GI   HR  HGALLD+ +L+DVY+
Sbjct: 118 RTKPTAEISTITDTLVMARKMYPGKRASLDALCRELGIDNKHRVLHGALLDAEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G  ++N       D    +  +   +              +++E   H+K +  + 
Sbjct: 178 LMTGGQKKLNLSSSGQNDTNTGKRVRKTQS-------PLTIISASEDEQQAHEKRLDLIE 230

Query: 233 K--NAIWDR 239
           K  + +W  
Sbjct: 231 KSASCLWRE 239


>gi|26990834|ref|NP_746259.1| DNA polymerase III subunit epsilon [Pseudomonas putida KT2440]
 gi|24985842|gb|AAN69723.1|AE016608_9 DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440]
          Length = 252

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 81/244 (33%), Positives = 120/244 (49%), Gaps = 8/244 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+   +  RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDP 117
           + +HGITD FL  KP F  +  EF+ F           A +  F         Q+   D 
Sbjct: 60  INVHGITDAFLVGKPRFGDVAEEFFQFIQGATLVIHNAAFDVGFINNEFALLGQQDRADI 119

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                I+DTL +AR +HP  RN L++LCKRY I  S R  HGALLDS LL+DVY+ M  G
Sbjct: 120 SQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGG 179

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA-- 235
            + ++      +     +         ++ R        + EEL+ H + +  + K+A  
Sbjct: 180 QTSLSLAGNGADTEEDGQGAGGSEIRRIVGRAPGRVIMASAEELEAHAERLAAIAKSAGG 239

Query: 236 --IW 237
             +W
Sbjct: 240 PSLW 243


>gi|310817168|ref|YP_003965132.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare
           Y25]
 gi|308755903|gb|ADO43832.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare
           Y25]
          Length = 224

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 93/227 (40%), Positives = 138/227 (60%), Gaps = 6/227 (2%)

Query: 13  DIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETTG + +  DRI+EIG VELL++  T RT+  ++ P  R    +A K+HG++ EFL 
Sbjct: 2   DTETTGFEPETGDRIVEIGCVELLNHLPTGRTYHQYINPQ-RDMPEDAFKVHGLSAEFLS 60

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           DKP F+ +  +F DF  + N   + HNA FDV F+NAEL  + K  + P+R +DTL IAR
Sbjct: 61  DKPLFAQVAQDFLDFIGDAN--LVIHNAAFDVKFLNAELGWVKKPLIAPARAVDTLLIAR 118

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191
           R+ P ++N L++LC+R+GI  S R+ HGALLDS +L++VY++++  G Q +FG       
Sbjct: 119 RRFPGAQNSLDALCRRFGIDNSKRTLHGALLDSEILAEVYLELIG-GRQPDFGLSAAAST 177

Query: 192 FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
             +    T        R  PL TR+T++E   H   ++ LG  A W+
Sbjct: 178 PAQGN-VTRSAWRPQPRPNPLPTRLTEDEAKAHAAFVEKLGPEAAWN 223


>gi|167587486|ref|ZP_02379874.1| DNA polymerase III subunit epsilon [Burkholderia ubonensis Bu]
          Length = 242

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 114/238 (47%), Gaps = 9/238 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ +  +  DF                          +       + +ID
Sbjct: 60  TTEFLSDKPKFAEVVDQIRDFVKGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCAGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
             ++            +++ L          + +EL  H   +  L K+     +W R
Sbjct: 180 LDDDAADGGAANGQRVSLASLDLP---VLAASDDELAAHQAQLDGLDKSVKGTCVWRR 234


>gi|260431958|ref|ZP_05785929.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415786|gb|EEX09045.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 240

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 94/247 (38%), Positives = 134/247 (54%), Gaps = 22/247 (8%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGA+EL ++  T  T+ V++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAIELWNHVATGETYHVYINPE-RSMPAEAFGVHGI 59

Query: 66  -------------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
                            LKDKP F+ I   F DF  +     + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQKPEPGQITLKDKPVFAQIGQAFRDFVGDAR--LVIHNAAFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +   P+   + +DTL+IAR++ P S   L++LC+R+ I  S+R  HGALLDS +L++VY+
Sbjct: 118 MGLPPIPMEQALDTLAIARKRFPGSPASLDALCRRFNIDNSNRVLHGALLDSEILAEVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++  G Q +FG            +          R  PL  RIT EE   H+  ++ LG
Sbjct: 178 ELIG-GRQPDFGLSAARSDSGGGGE----TWRPGPRPAPLPPRITAEERAAHEAFVKKLG 232

Query: 233 KNAIWDR 239
            NA+W R
Sbjct: 233 DNALWTR 239


>gi|262276480|ref|ZP_06054289.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
 gi|262220288|gb|EEY71604.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
          Length = 247

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 95/253 (37%), Positives = 145/253 (57%), Gaps = 17/253 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           ++ +  R IV D ETTG++       +  RIIEIGAVE+++   T R F V++ P+ R+ 
Sbjct: 1   MKASYDRIIVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REI 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA+ +HGITDEFL+DKPS++ I +EF +F        +AHNA FD GF++ E Q ++ 
Sbjct: 60  DPEAISVHGITDEFLRDKPSYADIHAEFLEFIKGAE--LVAHNAPFDTGFMDHEFQMLDP 117

Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+
Sbjct: 118 SIGKTGDFCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G + + FG   + D+    E          K       R + +EL EH+  +  + 
Sbjct: 178 LMTGGQTTLKFGGSESSDQDSGGEAIRRVEAGTKK---LKIIRASADELKEHEAQLDVIE 234

Query: 233 KN--AIWDRYISS 243
           K    +W +  S 
Sbjct: 235 KKGSCLWRQQESV 247


>gi|269101978|ref|ZP_06154675.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161876|gb|EEZ40372.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 241

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 94/247 (38%), Positives = 138/247 (55%), Gaps = 17/247 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R IVFD ETTG++      +  RIIEIGAVE+++   T  TF V++ P+ R   
Sbjct: 1   MKATNERIIVFDTETTGMNMSGPHYEGHRIIEIGAVEIINRKLTGNTFHVYIKPD-RAID 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA+++HGITDEFL  KP+++ I  EF DF        +AHNA FD+GF++ E +++   
Sbjct: 60  PEAIEVHGITDEFLVGKPTYAEIHQEFMDFIQGAE--LVAHNAPFDIGFMDYEFRKLGLK 117

Query: 117 PLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            L      ++ DTL +A+R  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 118 DLKTDEMCKVTDTLDMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLM 177

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           M     Q +    + E      E +     S   R      R + +E+  H+  +  +GK
Sbjct: 178 MTG--GQTSLQLSSGESSAAGAENEIRRLTSG--RKALKVIRASADEIAAHEDRLDLIGK 233

Query: 234 NA--IWD 238
            A  IW 
Sbjct: 234 KADVIWR 240


>gi|239993463|ref|ZP_04713987.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC
           27126]
          Length = 239

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 81/238 (34%), Positives = 123/238 (51%), Gaps = 12/238 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D K   RIIEIG VE+++   T   F V++ P GR    EA+++HGI
Sbjct: 1   MRQIVLDTETTGIDPKEGHRIIEIGCVEVVNRRLTGNHFHVYINP-GRHIEQEAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123
           T+EFL DKP+FS +  EF  F                       ++   K  +       
Sbjct: 60  TNEFLADKPTFSQVAQEFVSFIKGAQLVIHNAPFDVGFMDHEFGMEASTKGVITNQICDV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL++AR+ HP  +N+L++LCKRYGI  SHR+ HGALLD+ +L+DVY+ M  G +++  
Sbjct: 120 LDTLTLARQMHPGQKNNLDALCKRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTKLKL 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238
                      +   T         +K    + T +E+ +H+  +  + K     +W 
Sbjct: 180 -----ASSSGSDADSTAIRRVKRSANKLKVIKATADEITQHEARLDIVEKAGGKCLWR 232


>gi|167034708|ref|YP_001669939.1| DNA polymerase III subunit epsilon [Pseudomonas putida GB-1]
 gi|166861196|gb|ABY99603.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1]
          Length = 252

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 81/238 (34%), Positives = 118/238 (49%), Gaps = 4/238 (1%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+   +  RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDP 117
           + +HGITD FL  KP F  +  EF++F           A +  F         Q+   D 
Sbjct: 60  INVHGITDAFLVGKPRFGDVAEEFFEFIQGATLVIHNAAFDVGFINNEFALIGQQDRADV 119

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                I+DTL +AR +HP  RN L++LCKRY I  S R  HGALLDS LL+DVY+ M  G
Sbjct: 120 SQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGG 179

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            + ++      +      E        +  R        + EEL+ H + +  + K+A
Sbjct: 180 QTSLSLAGHGADAEGEGSEAGGSEIRRITGRTPGRVIMASAEELEAHAERLAAIAKSA 237


>gi|77360888|ref|YP_340463.1| DNA polymerase III subunit epsilon [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875799|emb|CAI87020.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 237

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 86/238 (36%), Positives = 134/238 (56%), Gaps = 13/238 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG+D K   RIIEIG VEL++   T   F V++ P  R +  EA+ +HGIT
Sbjct: 4   RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQ-RNSEEEAIDVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRI 123
           +EFL+DKP F  I  EF+D+        + HNA FD+G ++ E   +N+         ++
Sbjct: 63  NEFLRDKPLFHQIAQEFFDYIKGAE--LVIHNAPFDIGHMDNEFSLLNQGYPKTATFCQV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR  HP  +N+L++LC+RY +  + R+ HGALLDS +L+DVY+ M  G  ++N 
Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDVDNAKRTLHGALLDSEILADVYLAMTGGQVKLNL 180

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238
               N+D    +++K        +R   +    ++ E   H+  +  +   G + IW 
Sbjct: 181 NQNKNDDT---DQQKGGIRRLSAQRAPLVVLSASEAEQAAHEARLDIVNNEGGHCIWR 235


>gi|313498009|gb|ADR59375.1| DnaQ [Pseudomonas putida BIRD-1]
          Length = 252

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 81/244 (33%), Positives = 120/244 (49%), Gaps = 8/244 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+   +  RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDP 117
           + +HGITD FL  KP F  +  EF+ F           A +  F         Q+   D 
Sbjct: 60  INVHGITDAFLVGKPRFGDVAEEFFQFIQGATLVIHNAAFDVGFINNEFALLGQQDRADI 119

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                I+DTL +AR +HP  RN L++LCKRY I  S R  HGALLDS LL+DVY+ M  G
Sbjct: 120 SQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGG 179

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA-- 235
            + ++      +     +         ++ R        + EEL+ H + +  + K+A  
Sbjct: 180 QTSLSLAGNGADAEEDGQGAGGSEIRRIVGRTPGRVIMASAEELEAHAERLAAIAKSAGG 239

Query: 236 --IW 237
             +W
Sbjct: 240 PSLW 243


>gi|254508645|ref|ZP_05120760.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16]
 gi|219548402|gb|EED25412.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16]
          Length = 247

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 87/247 (35%), Positives = 136/247 (55%), Gaps = 17/247 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
            N+ R +V D ETTG++ +        RIIEIGAVE+++   T R F V++ P+ R    
Sbjct: 7   SNQHRIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RDIQA 65

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-- 115
           EA+++HGITDEFL DKP +  + +EF +F        +AHNA FD GF++ E + ++   
Sbjct: 66  EAVQVHGITDEFLVDKPEYQDVHAEFLEFIKGAE--LVAHNAPFDTGFMDYEFEMLDPSI 123

Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M
Sbjct: 124 GKTDDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLM 183

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233
             G + + F    ++      E           R      R + +EL+ H   +  + K 
Sbjct: 184 TGGQTSLQFNAGNSDGSDVGGE---SIKRVASGRKALKVIRASADELEAHQNRLDIVEKS 240

Query: 234 -NAIWDR 239
            + +W +
Sbjct: 241 GSCLWRQ 247


>gi|326386170|ref|ZP_08207794.1| DNA polymerase III, epsilon subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209395|gb|EGD60188.1| DNA polymerase III, epsilon subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 230

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 90/234 (38%), Positives = 128/234 (54%), Gaps = 6/234 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD +  DR++EIG VEL++   T   F  +  P+ R    EA  +HG+
Sbjct: 1   MREIVFDTETTGLDPRNGDRLVEIGCVELVNRIATGSVFHCYFNPD-RDMPAEAEAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  FL DKP FS   +E  DF  +  A  +AHNA FD GF+N+EL       +   R++D
Sbjct: 60  SAAFLSDKPKFSERAAELLDFLGD--APLVAHNAGFDFGFLNSELTFCGMGEVSRDRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T++IARRKHP ++  L++LC RYGI  SHR+KHGALLD+ LL+ +Y+++M  G QI    
Sbjct: 118 TVAIARRKHPGAKLSLDALCSRYGIDRSHRTKHGALLDAELLAQLYVELMG-GRQIGLEL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             +       E                    +  EL  H + +     + +W R
Sbjct: 177 AADTLTVAVSEDAPTRPQLARPFRPARPHSASVAELARHAEFMAGFA-DPLWSR 229


>gi|144899676|emb|CAM76540.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 228

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 91/234 (38%), Positives = 137/234 (58%), Gaps = 10/234 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D     RI+EIG VEL ++  T + +  ++ P  R    EA K+HG+
Sbjct: 1   MREIVLDTETTGFDPLTGHRIVEIGCVELFNHLPTGKVYHQYVNPE-RDMPEEAFKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +++FL DKP F+ I ++F DF  +  A  + HNA+FD+ FINAEL R+   PL  SR ID
Sbjct: 60  SEQFLSDKPVFAEIVADFMDFIGD--AILVIHNAEFDMRFINAELSRLGFQPLPMSRSID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+++AR+K P ++ +L++LC+R+ I  +HRS HGALLDS LL++VY++++  G Q     
Sbjct: 118 TVAMARKKFPGAQANLDALCRRFEIDNTHRSFHGALLDSELLAEVYLQLIG-GRQPGLEL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                         +  +    + +P       EEL+ H   +  L K A+W R
Sbjct: 177 GLLGGNGKGGGGPVLERV----KREPRPHAALPEELEAHAAFVGKL-KKALWLR 225


>gi|194290095|ref|YP_002006002.1| DNA polymerase III subunit epsilon [Cupriavidus taiwanensis LMG
           19424]
 gi|193223930|emb|CAQ69939.1| DNA polymerase III epsilon subunit [Cupriavidus taiwanensis LMG
           19424]
          Length = 246

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 77/236 (32%), Positives = 112/236 (47%), Gaps = 11/236 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR+IEIG VEL++   T R    ++ P  R     A+ +HGI
Sbjct: 4   MRQIVLDTETTGLNAATGDRLIEIGCVELMNRRLTGRHLHFYVNPE-RDIDEGAIAVHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ +  +  +F  +                +  +L  +         +ID
Sbjct: 63  TVEFLADKPRFAEVVHDIREFVQDAELIIHNAQFDLGFLDMEFQLLGLPPFRQHVGNVID 122

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  AR+  P  RN L++LC+R GI+ +HR  HGALLD+ LL++VY+ M  G   +    
Sbjct: 123 TLREARQMFPGKRNSLDALCERLGISNAHRKLHGALLDAELLAEVYLAMTRGQDSLVID- 181

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237
                      +  V   + L R      R T EE   H   ++ L K      +W
Sbjct: 182 ----TLDGGSGQDGVVTTADLSRLTLPVLRATDEEQQAHLALLKGLDKASGGKTVW 233


>gi|311103923|ref|YP_003976776.1| DNA polymerase III subunit epsilon [Achromobacter xylosoxidans A8]
 gi|310758612|gb|ADP14061.1| DNA polymerase III, epsilon subunit [Achromobacter xylosoxidans A8]
          Length = 240

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 110/239 (46%), Gaps = 11/239 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTGLD  +  RI+EIG VE+++   T     ++L P+ R + PEAL +HG+
Sbjct: 1   MRQIIFDTETTGLDPAQGHRIVEIGCVEMVNRMSTGNNLHIYLNPD-RDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ +  EF  F                                    + D
Sbjct: 60  TTEFLSDKPRFADVADEFVKFIQGAELIAHNAAFDVKFFNAELAKTGRGPVTDYCETVTD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L  AR   P  RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M  G   +    
Sbjct: 120 SLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLIDV 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRY 240
                            ++          + ++ EL EH+  +  L K+      W + 
Sbjct: 180 DDGASAG-----GNGVELARFDASGLPVIKASEAELAEHETYLAALDKSVGGECTWRKI 233


>gi|330810139|ref|YP_004354601.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378247|gb|AEA69597.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 253

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 84/246 (34%), Positives = 123/246 (50%), Gaps = 11/246 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 4   RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +EFL  KP F+ +  EF++F           A +  F         Q    D      I+
Sbjct: 63  NEFLVGKPRFAEVADEFFEFIQGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCTIL 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182

Query: 185 FKTNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
              ++     E    + T        R      R ++ +L EH   ++ + K+    A+W
Sbjct: 183 GNASDGNGTGEGSGNQATEIRRLPADRQPSRIIRASESDLAEHAARLEAIAKSAGAPALW 242

Query: 238 DRYISS 243
            +   S
Sbjct: 243 TQLAES 248


>gi|254437617|ref|ZP_05051111.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           307]
 gi|198253063|gb|EDY77377.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           307]
          Length = 242

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 20/247 (8%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  + DRI+EIGA+EL ++  T RT+  ++ P  R     A  +HGI
Sbjct: 1   MREIVLDTETTGFEPSEGDRIVEIGAIELHNHMPTGRTYHQYINPK-RSMPAGAFGIHGI 59

Query: 66  TDEFLKDK-------------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L                P F+ I   F DF  +  A+ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLDPPQTPTAGQVILRDKPVFADIAQAFVDFIGD--AKLVIHNAAFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +N+  L   + +DTL IAR+K P S   L++LC+R+GI  S+R+ HGALLDS +L++VY+
Sbjct: 118 VNRPLLPMDQSLDTLGIARKKFPGSPASLDALCRRFGIDNSNRTLHGALLDSEILAEVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++ G                K +           R  PL  +I   E+  H   I++LG
Sbjct: 178 ELIGGRQP---DLVMGGQTSSKSKTAAEGEWRAQPRPTPLAPKIKAAEVGAHAAFIKSLG 234

Query: 233 KNAIWDR 239
           + A+W++
Sbjct: 235 ETALWNK 241


>gi|115351214|ref|YP_773053.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD]
 gi|115281202|gb|ABI86719.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
          Length = 244

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 113/238 (47%), Gaps = 9/238 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  DR+IEIG VELL+   T     +++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ +  +  DF  +                       +         +ID
Sbjct: 60  TTEFLSDKPKFAEVVDQIRDFVKDAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
             +             +++ L          + +EL  H   +  L K+     +W +
Sbjct: 180 LDDAGADGGAANGQRVSLASL---ALPVLSASDDELAAHQTQLDELDKSVKGTCVWRQ 234


>gi|254514367|ref|ZP_05126428.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR5-3]
 gi|219676610|gb|EED32975.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR5-3]
          Length = 240

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 88/239 (36%), Positives = 129/239 (53%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+  +  RIIEIG VEL +   T R F  ++ P  R     A+++HGI
Sbjct: 1   MRQIVLDTETTGLEVSQGHRIIEIGCVELQNRLLTGRHFHRYINPE-RDIDAGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122
           T  FL DKP FS++  +F DF +      I HNA FD+GF+++EL RI+   L       
Sbjct: 60  TATFLADKPVFSAVAKDFVDFVDGAE--LIIHNAPFDIGFLDSELSRIDPAALPLAQRCE 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I DTL +AR +HP  RN L++LC+RY +  S R  HGALLD+ +L+DVY+ M  G + + 
Sbjct: 118 ITDTLVMARSRHPGQRNSLDALCQRYAVDNSSRDLHGALLDAEILADVYLTMTGGQTALA 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238
            G    + +     +  +       R +      +  EL  H+  + ++   G   +W 
Sbjct: 178 LGGDDGDSQGRTRPRGLIR--LPENRPRLPVIEPSDSELAAHEAQLDSIAAAGTEPLWR 234


>gi|126734401|ref|ZP_01750148.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2]
 gi|126717267|gb|EBA14131.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2]
          Length = 241

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 94/246 (38%), Positives = 136/246 (55%), Gaps = 20/246 (8%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  + DRI+EIGAVEL+ +  T RT+  ++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFEPHEGDRIVEIGAVELMGHVPTGRTYHQYINPQ-RSMPAEAFGVHGI 59

Query: 66  -------------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
                          E L+DKP F  +  +F DF  +  A+ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQDPKPGQETLRDKPLFKDVAQDFVDFVGD--AKLVIHNAAFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +N+  L   + +DTL+IARRK P S   L++LC+R+ I  S R+ HGALLDS +L++VY+
Sbjct: 118 LNRPLLPMDQALDTLAIARRKFPGSPASLDALCRRFAIDNSSRTLHGALLDSEILAEVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++  G Q +F      D   +             R +PL  ++T EE   H   ++ LG
Sbjct: 178 ELIG-GRQPDFALAA--DTRSQSAGGQSDEWRPSARPEPLAPKLTIEEAAAHAAFVEQLG 234

Query: 233 KNAIWD 238
             AIW 
Sbjct: 235 DGAIWK 240


>gi|312883833|ref|ZP_07743552.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368582|gb|EFP96115.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 244

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 91/242 (37%), Positives = 135/242 (55%), Gaps = 19/242 (7%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IV D ETTG++       +  RIIEIGAVE+++   T R F V++ P+ R    EA+ 
Sbjct: 11  RIIVLDTETTGMNLEGGPHYQGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RDIQAEAVG 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118
           +HGITDEFL+DKP +  + +EF  F N      +AHNA FDVGF++ E            
Sbjct: 70  VHGITDEFLRDKPEYKDVHAEFLAFINGAE--LVAHNASFDVGFMDYEFSMLDASIGKTA 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 QYCKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
           + + F   +  +   +  K+         R      R T +E+D H+K ++ + KN   +
Sbjct: 188 TSLQFNAGSASEEGVESIKRAAQG-----RKALKVLRATADEIDAHEKRLELIEKNGHCL 242

Query: 237 WD 238
           W 
Sbjct: 243 WR 244


>gi|254240209|ref|ZP_04933531.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192]
 gi|126193587|gb|EAZ57650.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192]
          Length = 246

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 82/240 (34%), Positives = 120/240 (50%), Gaps = 8/240 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+      RIIEIG VEL     T R F V+L P+ R+    A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRHLTGRHFHVYLQPD-REVDEGAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRI 123
           T+E+LKDKP F  + ++F++F           A +  F         Q+   D  +   +
Sbjct: 60  TNEYLKDKPRFREVANDFFEFIRGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYCSV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR +HP  RN+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M  G + ++ 
Sbjct: 120 LDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSLSL 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDR 239
                E         +        R      R   EEL  H   +  + K+A    +W +
Sbjct: 180 AGSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLWAQ 239


>gi|172060228|ref|YP_001807880.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6]
 gi|171992745|gb|ACB63664.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 244

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 112/238 (47%), Gaps = 9/238 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  DR+IEIG VELL+   T     +++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ +  +  DF                          +         +ID
Sbjct: 60  TTEFLSDKPKFAEVVDQIRDFVKGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
             +             +++ L          + +EL  H   +  L K+     +W +
Sbjct: 180 LDDAGADGGAANGQRVSLASL---ALPVLAASDDELAAHQTQLDELDKSVKGTCVWRQ 234


>gi|149377452|ref|ZP_01895195.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893]
 gi|149358293|gb|EDM46772.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893]
          Length = 236

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 82/243 (33%), Positives = 135/243 (55%), Gaps = 11/243 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D  +  RIIEIG VEL++   T R + V++ P  R+   EA+ +HGI
Sbjct: 1   MRQIVLDTETTGIDPAEGHRIIEIGCVELMERQITGRHYHVYINPE-REVEAEAITVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+EFL DKP F++I  EF++F                         +  +   +   ++D
Sbjct: 60  TNEFLADKPKFAAIADEFFEFIKGAELVIHNAAFDIGFMDSEFARLKPVRRTTEHCGVVD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L+IAR+KHP  +N+L++LCKRYGI  S+R  HGALLD+ +L+DVY+ +  G + ++   
Sbjct: 120 SLAIARKKHPGQKNNLDALCKRYGIDNSNRELHGALLDAEILADVYLLLTGGQTALSLDA 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDRYIS 242
             +E       ++   +     R+     R + +E + HD+ +  L K A   +WD+ ++
Sbjct: 180 GGDEAGGEGGIRRLADD-----RNPLPVPRASDDERNAHDEFMALLAKQAGTTVWDK-LT 233

Query: 243 SNQ 245
           + +
Sbjct: 234 TEE 236


>gi|188534758|ref|YP_001908555.1| DNA polymerase III subunit epsilon [Erwinia tasmaniensis Et1/99]
 gi|188029800|emb|CAO97680.1| DNA polymerase III epsilon subunit [Erwinia tasmaniensis Et1/99]
          Length = 249

 Score =  145 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 90/249 (36%), Positives = 136/249 (54%), Gaps = 17/249 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F V+L P+ R  
Sbjct: 1   MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI DEFL DKP+F+ I  +F  + N      + HNA FD+GF++ E  ++ +
Sbjct: 60  DPEAFGVHGIADEFLLDKPTFAQIADDFLAYINGAE--LVIHNASFDIGFMDYEFAKLQR 117

Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                    +I D+L++ARR  P  RN L++LC RY I  S R+ HGALLDS +L++V++
Sbjct: 118 GIAKTDTFCKITDSLAMARRLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M     Q +  F    +R  +++ +TV  I+          R ++EEL  H+  +  + 
Sbjct: 178 TMTG--GQTSLAFSMEGERGKQQDGETVHRIAR-PSSGLRVVRASEEELFAHEARLDLVE 234

Query: 233 KN---AIWD 238
           K     +W 
Sbjct: 235 KKGGSCLWR 243


>gi|92114064|ref|YP_573992.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens
           DSM 3043]
 gi|91797154|gb|ABE59293.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens
           DSM 3043]
          Length = 253

 Score =  145 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 88/253 (34%), Positives = 136/253 (53%), Gaps = 17/253 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D K   R+IEIGAVE+++   T   +  ++ P  R   PEA+++HGI
Sbjct: 1   MRQIVLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPE-RDIDPEAVEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-------- 117
           T+E + D+P F+ I   FW++        + HNA FDVGFI+ E   ++           
Sbjct: 60  TNERVADEPVFADIADAFWEYIRGAE--LVIHNAAFDVGFIDHEFGLLHDKRGGPRLGPV 117

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   ++DTL++AR+ HP  RN+L++LCKRYGI    R  HGALLD+ +LSDVY+ M  G
Sbjct: 118 ADYCSVLDTLAMARKLHPGQRNNLDALCKRYGIDNGRRVLHGALLDAEILSDVYLTMTGG 177

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQTL---G 232
            + ++            ++  +V  I  + R+      TR ++ E   H   + ++    
Sbjct: 178 QTALSLAGIEERAGDEGQDANSVSGIRRVSREGLSLAVTRPSEAEEAAHRAKLDSIRQAA 237

Query: 233 KNAIWDRYISSNQ 245
               WD    ++Q
Sbjct: 238 GQCHWDALNDASQ 250


>gi|171318244|ref|ZP_02907407.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171096588|gb|EDT41482.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 244

 Score =  145 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 112/237 (47%), Gaps = 9/237 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  DR+IEIG VELL+   T     +++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ +  +  DF  +                       +         +ID
Sbjct: 60  TTEFLSDKPKFAEVVDQIRDFVKDAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
             +             +++ L          + +EL  H   +  L K+     +W 
Sbjct: 180 LDDAGADGGAANGQRVSLASLDLP---VLAASDDELAAHQTQLDELDKSVKGTCVWR 233


>gi|257095469|ref|YP_003169110.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047993|gb|ACV37181.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 238

 Score =  145 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 80/238 (33%), Positives = 114/238 (47%), Gaps = 9/238 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL+ K   RIIEI  VE+ +   TNR F  +L P+ R     AL +HGI
Sbjct: 1   MRQIFLDTETTGLEHKFGHRIIEIACVEMRNRRLTNRHFHRYLNPD-RDIDAGALSVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +  EF DF                       L  +         + D
Sbjct: 60  SREFLLDKPRFADVAVEFLDFVRGAELVIHNAAFDVGFLNAELALLDMAPVDTVCHGVCD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +A+  HP  +N+LN+LC+RYG+  SHR+ HGALLD+ +L++VY+ M  G   +    
Sbjct: 120 TLRMAKDLHPGKKNNLNALCERYGVDNSHRTLHGALLDAEILAEVYLAMTRGQESLIMDL 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWDR 239
             +         +T    S  +R      R + EEL EH + +  +        +W R
Sbjct: 180 GDDNGGRLDTAGRT---PSPGRRQTLQVKRASPEELAEHQQVLTAIQEASKGKCLWLR 234


>gi|170722630|ref|YP_001750318.1| DNA polymerase III subunit epsilon [Pseudomonas putida W619]
 gi|169760633|gb|ACA73949.1| DNA polymerase III, epsilon subunit [Pseudomonas putida W619]
          Length = 254

 Score =  145 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 82/238 (34%), Positives = 118/238 (49%), Gaps = 4/238 (1%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+   +  RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDKRLVILDTETTGMPVSEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDP 117
           + +HGITD FL  KP F  +  EF++F           A +  F         QR   D 
Sbjct: 60  INVHGITDAFLVGKPRFGDVAEEFFEFIQGATLVIHNAAFDVGFINNEFALLGQRDRADI 119

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                I+DTL +AR +HP  RN L++LCKRY I  S R  HGALLDS LL+DVY+ M  G
Sbjct: 120 SQHCTILDTLLLARARHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGG 179

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            + ++      +     +         +  R        T EEL+ H + +  + K+A
Sbjct: 180 QTSLSLAGNGADGDNEGQGSGGSEIRRITGRAPGRVIMATAEELEAHAERLAAIAKSA 237


>gi|156935271|ref|YP_001439187.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533525|gb|ABU78351.1| hypothetical protein ESA_03124 [Cronobacter sakazakii ATCC BAA-894]
          Length = 243

 Score =  145 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 81/242 (33%), Positives = 124/242 (51%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFMV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI+DEFL +KP F  +  +F D+        + HNA FD+GF++ E   +N+       
Sbjct: 66  HGISDEFLMNKPVFGDVVDDFLDYIRGAE--LVIHNASFDIGFMDYEFGMLNRGIPKTET 123

Query: 123 IIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                     AR+  P  RN L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            I F  + +     +++  T     + +  +    R   EEL  H+  +  + K     +
Sbjct: 184 SIAFAMEGDGQ---QQQGDTGIQRVVRQASRLKVVRACDEELAAHESRLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|319780604|ref|YP_004140080.1| DNA polymerase III, subunit epsilon [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166492|gb|ADV10030.1| DNA polymerase III, epsilon subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 233

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 145/235 (61%), Gaps = 4/235 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLDS++DR+IE+G VEL++   T RTF  ++ P GR    EA  +HGI+
Sbjct: 1   MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHVEAQAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L  KP+F+ I  E+ D      A+ +AHNA FDVGF+N E  R+    +D   ++DT
Sbjct: 61  AADLAGKPTFAEIVQEWLD--FTDGAKLVAHNATFDVGFLNVEFGRLGHPVIDNGVVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LC+RYGI  + R+KHGALLDS LL++VYI+++  G Q      
Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNTKRTKHGALLDSELLAEVYIELIG-GKQAALILD 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
           +       E  + +  I +  R  PL  R+T+ E   H   + TLG+ A+W + +
Sbjct: 178 SATAPAQGENVRQI-EIVVAPRPAPLPPRVTEAERAAHAGMVGTLGEKALWLKVL 231


>gi|148555737|ref|YP_001263319.1| DNA polymerase III subunit epsilon [Sphingomonas wittichii RW1]
 gi|148500927|gb|ABQ69181.1| DNA polymerase III, epsilon subunit [Sphingomonas wittichii RW1]
          Length = 234

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 85/233 (36%), Positives = 129/233 (55%), Gaps = 7/233 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGL+    DR++EIG VEL++  +T  +F  +  P  R    EA ++HG+
Sbjct: 1   MREIVFDTETTGLNPATGDRLVEIGCVELVNRVETGNSFHCYFNPQ-RSMPFEAEQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++ FL DKP F+    E   F  +     +AHNA FD GF+N EL    +  +D  R++D
Sbjct: 60  SERFLSDKPLFADKVEELLAFIGDA--PLVAHNASFDFGFLNWELGACGRSIVDMGRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IAR+ HP +++ L++LC RYGI  SHR KHGALLD+ LL+ +Y+++   G QI    
Sbjct: 118 TLQIARKMHPGAKHSLDALCSRYGIDRSHRVKHGALLDAQLLAQLYVELTG-GRQIGLSM 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK-PLFTRITKEELDEHDKTIQTLGKNAIW 237
                            ++  +  +       ++EEL+ H   ++ L    +W
Sbjct: 177 GEAVVEEVVVVATPRATVAASRTIRAIRPHFASEEELERHKAFVEKLD-APLW 228


>gi|238750479|ref|ZP_04611980.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380]
 gi|238711410|gb|EEQ03627.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380]
          Length = 259

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 84/249 (33%), Positives = 134/249 (53%), Gaps = 17/249 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 12  RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLIDPEAYGV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+DEFL DKP+F+ I  EF +F        + HNA FD+GF++ E + + +D      
Sbjct: 71  HGISDEFLADKPTFADITPEFLEFIRGAE--LVIHNAAFDIGFMDYEFRMLQQDIPKTET 128

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G +
Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            ++F  + ++ +    E                     ++EL  H+  +  + K     +
Sbjct: 189 SLSFSMEGDQSQNNSSEDIQRITRPAS---GLKIIYAAEDELKAHESRLDLVMKKGGSCL 245

Query: 237 WDRYISSNQ 245
           W   + + +
Sbjct: 246 WRMPLDTEE 254


>gi|74310830|ref|YP_309249.1| DNA polymerase III subunit epsilon [Shigella sonnei Ss046]
 gi|82542808|ref|YP_406755.1| DNA polymerase III subunit epsilon [Shigella boydii Sb227]
 gi|157156660|ref|YP_001461381.1| DNA polymerase III subunit epsilon [Escherichia coli E24377A]
 gi|157159676|ref|YP_001456994.1| DNA polymerase III subunit epsilon [Escherichia coli HS]
 gi|187734104|ref|YP_001879012.1| DNA polymerase III subunit epsilon [Shigella boydii CDC 3083-94]
 gi|191167032|ref|ZP_03028854.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A]
 gi|193067693|ref|ZP_03048660.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019]
 gi|194427534|ref|ZP_03060082.1| DNA polymerase III, epsilon subunit [Escherichia coli B171]
 gi|194432694|ref|ZP_03064979.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012]
 gi|209917402|ref|YP_002291486.1| DNA polymerase III subunit epsilon [Escherichia coli SE11]
 gi|218552790|ref|YP_002385703.1| DNA polymerase III subunit epsilon [Escherichia coli IAI1]
 gi|218693677|ref|YP_002401344.1| DNA polymerase III subunit epsilon [Escherichia coli 55989]
 gi|260842441|ref|YP_003220219.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2
           str. 12009]
 gi|260853420|ref|YP_003227311.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O26:H11
           str. 11368]
 gi|260866358|ref|YP_003232760.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O111:H-
           str. 11128]
 gi|293418309|ref|ZP_06660744.1| DNA polymerase III [Escherichia coli B088]
 gi|332281343|ref|ZP_08393756.1| DNA polymerase III epsilon subunit [Shigella sp. D9]
 gi|73854307|gb|AAZ87014.1| DNA polymerase III epsilon subunit [Shigella sonnei Ss046]
 gi|81244219|gb|ABB64927.1| DNA polymerase III epsilon subunit [Shigella boydii Sb227]
 gi|157065356|gb|ABV04611.1| DNA polymerase III, epsilon subunit [Escherichia coli HS]
 gi|157078690|gb|ABV18398.1| DNA polymerase III, epsilon subunit [Escherichia coli E24377A]
 gi|187431096|gb|ACD10370.1| DNA polymerase III, epsilon subunit [Shigella boydii CDC 3083-94]
 gi|190902925|gb|EDV62652.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A]
 gi|192959105|gb|EDV89541.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019]
 gi|194414304|gb|EDX30578.1| DNA polymerase III, epsilon subunit [Escherichia coli B171]
 gi|194418956|gb|EDX35040.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012]
 gi|209910661|dbj|BAG75735.1| DNA polymerase III epsilon subunit [Escherichia coli SE11]
 gi|218350409|emb|CAU96094.1| DNA polymerase III epsilon subunit [Escherichia coli 55989]
 gi|218359558|emb|CAQ97098.1| DNA polymerase III epsilon subunit [Escherichia coli IAI1]
 gi|257752069|dbj|BAI23571.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O26:H11
           str. 11368]
 gi|257757588|dbj|BAI29085.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2
           str. 12009]
 gi|257762714|dbj|BAI34209.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O111:H-
           str. 11128]
 gi|291324837|gb|EFE64252.1| DNA polymerase III [Escherichia coli B088]
 gi|320186397|gb|EFW61129.1| DNA polymerase III epsilon subunit [Shigella flexneri CDC 796-83]
 gi|320201190|gb|EFW75773.1| DNA polymerase III epsilon subunit [Escherichia coli EC4100B]
 gi|323160256|gb|EFZ46213.1| DNA polymerase III, epsilon subunit [Escherichia coli E128010]
 gi|323165914|gb|EFZ51696.1| DNA polymerase III, epsilon subunit [Shigella sonnei 53G]
 gi|323171002|gb|EFZ56651.1| DNA polymerase III, epsilon subunit [Escherichia coli LT-68]
 gi|323176527|gb|EFZ62119.1| DNA polymerase III, epsilon subunit [Escherichia coli 1180]
 gi|323181627|gb|EFZ67042.1| DNA polymerase III, epsilon subunit [Escherichia coli 1357]
 gi|324115459|gb|EGC09401.1| DNA polymerase III [Escherichia coli E1167]
 gi|332093741|gb|EGI98796.1| DNA polymerase III, epsilon subunit [Shigella boydii 3594-74]
 gi|332095033|gb|EGJ00068.1| DNA polymerase III, epsilon subunit [Shigella boydii 5216-82]
 gi|332097572|gb|EGJ02551.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 155-74]
 gi|332103695|gb|EGJ07041.1| DNA polymerase III epsilon subunit [Shigella sp. D9]
          Length = 243

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +      + +  K      T EEL  H+  +  + K     +
Sbjct: 184 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVEKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|332186931|ref|ZP_08388672.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. S17]
 gi|332012941|gb|EGI55005.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. S17]
          Length = 232

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 100/233 (42%), Positives = 139/233 (59%), Gaps = 9/233 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTG   S+ DR++EIG VEL++  +T RT+  +  P  R    EA  +HG+
Sbjct: 1   MREIVFDTETTGFKFSEGDRLVEIGCVELVNRVETGRTYHAYFNPE-RSMPAEAQAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRII 124
           +D FLKDKP F+   +EF DF  +  A  IAHNA FD GFIN EL  +    +   +R++
Sbjct: 60  SDAFLKDKPVFAEGVAEFLDFIGD--APLIAHNATFDFGFINGELGALGFPHVCEKTRMV 117

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL+IAR KHP +++ L++LC RYGI  SHR  HGALLD+ LL+ VY+++M  G QI  G
Sbjct: 118 DTLAIARSKHPGAKHTLDALCSRYGIDRSHRVLHGALLDAQLLAQVYVELMG-GRQIGLG 176

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
              + D     +  TV     + R  P   R +  EL  H   ++ +  + IW
Sbjct: 177 LLAD-DAGQGTQTITVTRAPAIVRP-PRVFRPSDAELAAHAAFLKGIA-DPIW 226


>gi|22126970|ref|NP_670393.1| DNA polymerase III subunit epsilon [Yersinia pestis KIM 10]
 gi|45442535|ref|NP_994074.1| DNA polymerase III subunit epsilon [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51597279|ref|YP_071470.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP
           32953]
 gi|108806557|ref|YP_650473.1| DNA polymerase III subunit epsilon [Yersinia pestis Antiqua]
 gi|108813076|ref|YP_648843.1| DNA polymerase III subunit epsilon [Yersinia pestis Nepal516]
 gi|145598912|ref|YP_001162988.1| DNA polymerase III subunit epsilon [Yersinia pestis Pestoides F]
 gi|149366915|ref|ZP_01888949.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125]
 gi|153948473|ref|YP_001400036.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP
           31758]
 gi|162419464|ref|YP_001607083.1| DNA polymerase III subunit epsilon [Yersinia pestis Angola]
 gi|165924368|ref|ZP_02220200.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938341|ref|ZP_02226899.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011939|ref|ZP_02232837.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166211805|ref|ZP_02237840.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399939|ref|ZP_02305457.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419869|ref|ZP_02311622.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424264|ref|ZP_02316017.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170023355|ref|YP_001719860.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis
           YPIII]
 gi|186896384|ref|YP_001873496.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928251|ref|YP_002346126.1| DNA polymerase III subunit epsilon [Yersinia pestis CO92]
 gi|229841013|ref|ZP_04461172.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843118|ref|ZP_04463264.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229895464|ref|ZP_04510636.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A]
 gi|229903519|ref|ZP_04518632.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516]
 gi|270487300|ref|ZP_06204374.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27]
 gi|294503098|ref|YP_003567160.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003]
 gi|21960013|gb|AAM86644.1|AE013910_6 DNA polymerase III, epsilon subunit [Yersinia pestis KIM 10]
 gi|45437400|gb|AAS62951.1| DNA polymerase III, epsilon chain [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51590561|emb|CAH22202.1| DNA polymerase III, epsilon chain [Yersinia pseudotuberculosis IP
           32953]
 gi|108776724|gb|ABG19243.1| DNA polymerase III, epsilon subunit [Yersinia pestis Nepal516]
 gi|108778470|gb|ABG12528.1| DNA polymerase III, epsilon subunit [Yersinia pestis Antiqua]
 gi|115346862|emb|CAL19748.1| DNA polymerase III, epsilon chain [Yersinia pestis CO92]
 gi|145210608|gb|ABP40015.1| DNA polymerase III, epsilon subunit [Yersinia pestis Pestoides F]
 gi|149291289|gb|EDM41364.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125]
 gi|152959968|gb|ABS47429.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|162352279|gb|ABX86227.1| DNA polymerase III, epsilon subunit [Yersinia pestis Angola]
 gi|165913719|gb|EDR32338.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923428|gb|EDR40560.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989106|gb|EDR41407.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207576|gb|EDR52056.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962610|gb|EDR58631.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050647|gb|EDR62055.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057113|gb|EDR66876.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749889|gb|ACA67407.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis
           YPIII]
 gi|186699410|gb|ACC90039.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679289|gb|EEO75392.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516]
 gi|229689465|gb|EEO81526.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697379|gb|EEO87426.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701619|gb|EEO89646.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A]
 gi|262361135|gb|ACY57856.1| DNA polymerase III subunit epsilon [Yersinia pestis D106004]
 gi|270335804|gb|EFA46581.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27]
 gi|294353557|gb|ADE63898.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003]
 gi|320014218|gb|ADV97789.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 254

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 86/249 (34%), Positives = 132/249 (53%), Gaps = 17/249 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+DEFL DKP+F+ I  EF DF        + HNA FD+GF++ E + + +D      
Sbjct: 66  HGISDEFLADKPTFADITPEFLDFIRGAE--LVIHNAAFDIGFMDYEFRMLQQDIPKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAI 236
            + F  +    +    E                    T++EL  H+  +      G + +
Sbjct: 184 SLTFSMEGEVSQNNASEDIQRITRPAS---ALKIIYATEDELANHESRLDFVMKKGGSCL 240

Query: 237 WDRYISSNQ 245
           W   + + +
Sbjct: 241 WRMPLEAEE 249


>gi|42520014|ref|NP_965929.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|99034422|ref|ZP_01314429.1| hypothetical protein Wendoof_01000768 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|42409751|gb|AAS13863.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 231

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 95/240 (39%), Positives = 143/240 (59%), Gaps = 11/240 (4%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           ++K+R+IV D ETTGLD++   RIIEIG VEL++   T + F  +L P  R     + K+
Sbjct: 2   ESKLREIVLDTETTGLDTESGHRIIEIGCVELINRIPTGKVFHRYLNPE-RDIPYHSFKI 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI++EFL+DKP FS +  EF DF    N   + HNA+FDV F+N EL ++N   +   R
Sbjct: 61  HGISEEFLEDKPLFSDVALEFLDFI--SNDILVIHNAEFDVKFLNMELSKLNARLISSDR 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+K   S   LN+LCKR+ I++ +R  HGAL+D+ LL+ VY+++  G     
Sbjct: 119 VLDTLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTFL 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           F  + N+D      +  V N++      P       EE+DEH K +  +  N +W++YI 
Sbjct: 179 FDNECNQDSNSTFVQHKVRNLT------PREHLPNSEEIDEHKKLLDKIN-NTLWNKYIE 231


>gi|325527245|gb|EGD04625.1| DNA polymerase III subunit epsilon [Burkholderia sp. TJI49]
          Length = 243

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 113/238 (47%), Gaps = 9/238 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  DR+IEIG VELL+   T     +++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ +  +  DF                          +         +ID
Sbjct: 60  TTEFLSDKPKFAEVVDQIRDFVKGAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
             +E            +++ L          + +EL  H   +  L K+     +W +
Sbjct: 180 LDDEAADGGAGGGQRVSLASLDLP---VLAASDDELAAHQTQLDELDKSVKGTCVWRQ 234


>gi|260596631|ref|YP_003209202.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032]
 gi|260215808|emb|CBA28259.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032]
          Length = 243

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 129/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFMV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---ELQRINKDPLD 119
           HGI+DEFL +KP F  +  +F D+        + HNA FD+GF++     L+R       
Sbjct: 66  HGISDEFLMNKPVFGDVVEDFLDYIRGAE--LVIHNASFDIGFMDYEFGMLKRGLPKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            I F  + +     ++   T     + +  +    R   EEL  H+  +  + K     +
Sbjct: 184 SIAFAMEGDGQ---QQRDDTGIQRVVRQASRLKVVRACDEELAAHESRLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|312795584|ref|YP_004028506.1| DNA polymerase III, epsilon chain [Burkholderia rhizoxinica HKI
           454]
 gi|312167359|emb|CBW74362.1| DNA polymerase III, epsilon chain (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 247

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 112/238 (47%), Gaps = 10/238 (4%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTGL++K  DRIIEIG VE+++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRLLVLDTETTGLNAKGGDRIIEIGCVEIVNRQLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL+DKP F+ I     DF  + +                  +  +         +ID
Sbjct: 60  TTEFLRDKPKFAEIADALRDFVKDADIIIHNAPFDIGFLNAEFAMLGLPPFCDHCGEVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A+   P  RN L++LC+R+GI+ +HR+ HGALLD+ LL+DVY+ M  G   +    
Sbjct: 120 TLVQAKAMFPGKRNSLDALCERFGISNAHRTLHGALLDAELLADVYLAMTRGQESLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
             +           V     L + +      + +EL  H   +  L K      +W  
Sbjct: 180 LADTPGSGSVATTRVS----LAQFELPVISASDDELAAHAGVLDELDKARKGPCVWRE 233


>gi|193063208|ref|ZP_03044299.1| DNA polymerase III, epsilon subunit [Escherichia coli E22]
 gi|256020181|ref|ZP_05434046.1| DNA polymerase III subunit epsilon [Shigella sp. D9]
 gi|300819828|ref|ZP_07100014.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1]
 gi|300823399|ref|ZP_07103529.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7]
 gi|300926565|ref|ZP_07142351.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1]
 gi|301326098|ref|ZP_07219494.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1]
 gi|307314695|ref|ZP_07594293.1| DNA polymerase III, epsilon subunit [Escherichia coli W]
 gi|309797929|ref|ZP_07692309.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7]
 gi|331666456|ref|ZP_08367336.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271]
 gi|331675873|ref|ZP_08376590.1| DNA polymerase III, epsilon subunit [Escherichia coli H591]
 gi|192931116|gb|EDV83719.1| DNA polymerase III, epsilon subunit [Escherichia coli E22]
 gi|300417423|gb|EFK00734.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1]
 gi|300524017|gb|EFK45086.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7]
 gi|300527586|gb|EFK48648.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1]
 gi|300847158|gb|EFK74918.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1]
 gi|306905814|gb|EFN36339.1| DNA polymerase III, epsilon subunit [Escherichia coli W]
 gi|308118469|gb|EFO55731.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7]
 gi|315059428|gb|ADT73755.1| DNA polymerase III, epsilon subunit [Escherichia coli W]
 gi|320173695|gb|EFW48884.1| DNA polymerase III epsilon subunit [Shigella dysenteriae CDC
           74-1112]
 gi|320179852|gb|EFW54798.1| DNA polymerase III epsilon subunit [Shigella boydii ATCC 9905]
 gi|323380013|gb|ADX52281.1| DNA polymerase III, epsilon subunit [Escherichia coli KO11]
 gi|323945583|gb|EGB41633.1| DNA polymerase III [Escherichia coli H120]
 gi|324020673|gb|EGB89892.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 117-3]
 gi|331066301|gb|EGI38179.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271]
 gi|331076433|gb|EGI47710.1| DNA polymerase III, epsilon subunit [Escherichia coli H591]
          Length = 246

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +      + +  K      T EEL  H+  +  + K     +
Sbjct: 187 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVEKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|191171395|ref|ZP_03032944.1| DNA polymerase III, epsilon subunit [Escherichia coli F11]
 gi|190908329|gb|EDV67919.1| DNA polymerase III, epsilon subunit [Escherichia coli F11]
 gi|222032040|emb|CAP74779.1| DNA polymerase III subunit epsilon [Escherichia coli LF82]
 gi|312944818|gb|ADR25645.1| DNA polymerase III subunit epsilon [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|320197298|gb|EFW71914.1| DNA polymerase III epsilon subunit [Escherichia coli WV_060327]
          Length = 243

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNATFDIGFMDYEFSLLKRDIPKTNT 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +T     + +  K      T EEL  H+  +  + K     +
Sbjct: 184 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|323498002|ref|ZP_08103011.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
 gi|323317047|gb|EGA70049.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
          Length = 247

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 88/243 (36%), Positives = 133/243 (54%), Gaps = 17/243 (6%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IV D ETTG++ +        RIIEIGAVE+++   T R F V++ P+ R+  PEA+ 
Sbjct: 11  RIIVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RQIQPEAVL 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118
           +HGITDEFL DKP +  +  EF +F        +AHNA FD GF++ E +          
Sbjct: 70  VHGITDEFLVDKPEYQDVHQEFLEFIKGAE--LVAHNAPFDTGFMDYEFEMLNAQIGKTE 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAI 236
           + + F    ++      E           R      R + +EL+ H   +  + K  + +
Sbjct: 188 TSLQFNPGASDSDAVGGE---SIKRVASGRKALKVIRASADELEAHQSRLDIVEKSGSCL 244

Query: 237 WDR 239
           W +
Sbjct: 245 WRQ 247


>gi|237807686|ref|YP_002892126.1| DNA polymerase III, epsilon subunit [Tolumonas auensis DSM 9187]
 gi|237499947|gb|ACQ92540.1| DNA polymerase III, epsilon subunit [Tolumonas auensis DSM 9187]
          Length = 249

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 119/247 (48%), Gaps = 16/247 (6%)

Query: 5   NKM---RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           N M   R ++ D ETTG++          RIIEIG VE+++   T   + V++ P+ R  
Sbjct: 2   NPMQTNRYVILDTETTGMNQSGGPVYIGHRIIEIGCVEVINRRLTGNHYHVYIKPD-RLV 60

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+++HGITD FL DKP F++I  EF DF           +                +
Sbjct: 61  DEEAIRVHGITDAFLADKPPFAAIAQEFRDFIRGAELVIHNASFDVGFIDHEFNKLGWTE 120

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D  R+ D+L++AR + P  RN L++LC R+GI  SHR+ HGALLD+ +L+DVY+ M 
Sbjct: 121 RVKDICRVTDSLALARGQFPGKRNSLDALCTRFGIDNSHRTLHGALLDAEILADVYLLMT 180

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGKN 234
               Q         +        +   + +++R+        + +EL  H+K +  + K 
Sbjct: 181 G--GQTRLELHNTVNDNNSASSASAQQLKMIQRNGSLKVLSASADELAAHEKRLDLVAKK 238

Query: 235 ---AIWD 238
               +W 
Sbjct: 239 GGCCLWR 245


>gi|292487330|ref|YP_003530202.1| DNA polymerase III subunit epsilon [Erwinia amylovora CFBP1430]
 gi|292898576|ref|YP_003537945.1| DNA polymerase III subunit epsilon [Erwinia amylovora ATCC 49946]
 gi|291198424|emb|CBJ45532.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC 49946]
 gi|291552749|emb|CBA19794.1| DNA polymerase III epsilon subunit [Erwinia amylovora CFBP1430]
 gi|312171436|emb|CBX79694.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC
           BAA-2158]
          Length = 249

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 87/249 (34%), Positives = 136/249 (54%), Gaps = 17/249 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F V+L P+ R  
Sbjct: 1   MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLI 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI DEFL DKP+F+ I  +F  + N      + HNA FD+GF++ E  ++ +
Sbjct: 60  DPEAFGVHGIADEFLLDKPTFAQIADDFLAYINGAE--LVIHNASFDIGFMDYEFAKLQR 117

Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                    +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLDS +L++V++
Sbjct: 118 GIAKTETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M     Q +  F    +R  +++ +T+  I+          R +++EL  H+  +  + 
Sbjct: 178 TMTG--GQTSLAFSMEGEREKQQDGETIQRIAR-PASGLRVVRASEQELMAHEARLDLVE 234

Query: 233 KN---AIWD 238
           K     +W 
Sbjct: 235 KKGGSCLWR 243


>gi|218557151|ref|YP_002390064.1| DNA polymerase III subunit epsilon [Escherichia coli S88]
 gi|218688085|ref|YP_002396297.1| DNA polymerase III subunit epsilon [Escherichia coli ED1a]
 gi|218698838|ref|YP_002406467.1| DNA polymerase III subunit epsilon [Escherichia coli IAI39]
 gi|218703464|ref|YP_002410983.1| DNA polymerase III subunit epsilon [Escherichia coli UMN026]
 gi|293403294|ref|ZP_06647385.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412]
 gi|293408304|ref|ZP_06652143.1| DNA polymerase III [Escherichia coli B354]
 gi|298378908|ref|ZP_06988789.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302]
 gi|218363920|emb|CAR01585.1| DNA polymerase III epsilon subunit [Escherichia coli S88]
 gi|218368824|emb|CAR16572.1| DNA polymerase III epsilon subunit [Escherichia coli IAI39]
 gi|218425649|emb|CAR06436.1| DNA polymerase III epsilon subunit [Escherichia coli ED1a]
 gi|218430561|emb|CAR11427.1| DNA polymerase III epsilon subunit [Escherichia coli UMN026]
 gi|221361649|emb|CAX20320.1| DNA polymerase III, epsilon subunit [Escherichia coli]
 gi|291429147|gb|EFF02167.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412]
 gi|291471482|gb|EFF13965.1| DNA polymerase III [Escherichia coli B354]
 gi|294493054|gb|ADE91810.1| DNA polymerase III, epsilon subunit [Escherichia coli IHE3034]
 gi|298280021|gb|EFI21525.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302]
 gi|323948751|gb|EGB44651.1| DNA polymerase III [Escherichia coli H252]
 gi|323958799|gb|EGB54498.1| DNA polymerase III [Escherichia coli H263]
          Length = 243

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +T     + +  K      T EEL  H+  +  + K     +
Sbjct: 184 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|113868435|ref|YP_726924.1| DNA polymerase III subunit epsilon [Ralstonia eutropha H16]
 gi|113527211|emb|CAJ93556.1| DNA polymerase III epsilon subunit [Ralstonia eutropha H16]
          Length = 246

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/236 (32%), Positives = 110/236 (46%), Gaps = 11/236 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL +   DR+IEIG VEL++   T R    ++ P  R     A+ +HGI
Sbjct: 4   MRQIVLDTETTGLSAATGDRLIEIGCVELMNRRLTGRHLHFYVNPE-RDIDEGAIAVHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ + ++  +F  +                +  +L  +         +ID
Sbjct: 63  TVEFLADKPRFAEVVNDIREFIQDAELIIHNAPFDLGFLDMEFQLLGLPPFRQHAGNVID 122

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  AR+  P  RN L++LC R GI+ +HR+ HGALLD+ LL++VY+ M  G   +    
Sbjct: 123 TLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRGQDSLVIDM 182

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237
             +                 L R      R T EE   H   ++ L K      +W
Sbjct: 183 HDSTAGHGGAVAAAD-----LSRLALPVLRATDEEQQAHLALLKGLDKASGGKTVW 233


>gi|238784821|ref|ZP_04628822.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970]
 gi|238714237|gb|EEQ06248.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970]
          Length = 259

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 86/248 (34%), Positives = 132/248 (53%), Gaps = 17/248 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 12  RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+DEFL DKP+F+ I  EF +F        I HNA FD+GF++ E + + +D      
Sbjct: 71  HGISDEFLADKPTFADIAPEFLEFIRGAE--LIIHNAAFDIGFMDHEFRMLQQDIPKTET 128

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +LS+VY+ M  G +
Sbjct: 129 FCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILSEVYLAMTGGQT 188

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  + ++ +    +                     ++EL  H+  +  + K     +
Sbjct: 189 SLTFSMEGDQSQNDSSDDIQRITRPAS---GLKIIYAAEDELAAHESRLDLVMKKGGSCL 245

Query: 237 WDRYISSN 244
           W   + S 
Sbjct: 246 WRMPLESE 253


>gi|301050549|ref|ZP_07197422.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1]
 gi|300297757|gb|EFJ54142.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1]
          Length = 246

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +T     + +  K      T EEL  H+  +  + K     +
Sbjct: 187 SMTFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|281177435|dbj|BAI53765.1| DNA polymerase III epsilon subunit [Escherichia coli SE15]
 gi|330910061|gb|EGH38571.1| DNA polymerase 3 epsilon subunit [Escherichia coli AA86]
          Length = 243

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +T     + +  K      T EEL  H+  +  + K     +
Sbjct: 184 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGTCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|254480788|ref|ZP_05094035.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2148]
 gi|214039371|gb|EEB80031.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2148]
          Length = 244

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 92/242 (38%), Positives = 133/242 (54%), Gaps = 12/242 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+  +  RIIEIG VEL     T   +  ++ PN R+    A+++HGI
Sbjct: 1   MRQIVLDTETTGLEVSQGHRIIEIGCVELDTRRLTGNHYHQYINPN-REIDQGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122
           T+EFLKDKPSF  +F EF +F        + HNA FD+GF+N+E+QR+  D        +
Sbjct: 60  TNEFLKDKPSFERVFREFLEFVEGSE--LVIHNAPFDLGFLNSEIQRLEPDAPRLEDRCK 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR KHP  RN L++LC+RYG+  S R  HGALLDS +L+DVY+ M  G + + 
Sbjct: 118 IVDTLVMARGKHPGQRNSLDALCQRYGVDNSQRDLHGALLDSEILADVYLLMTGGQTALQ 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
                +         + +  +    R        + EEL  H+  ++ +    G   +W 
Sbjct: 178 LSDNDSGAESGASRSERIIRLDAG-RQALPVIAASTEELAAHEAQLEAISSASGGKVLWK 236

Query: 239 RY 240
             
Sbjct: 237 EI 238


>gi|329894914|ref|ZP_08270713.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088]
 gi|328922643|gb|EGG29978.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088]
          Length = 247

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 89/248 (35%), Positives = 123/248 (49%), Gaps = 14/248 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S   R+IEIG VEL++   + R F  ++ P  R+  P A+++HGI
Sbjct: 1   MRQIVLDTETTGLETSDGHRVIEIGCVELINRRLSGRHFHQYINPQ-REVDPGAMEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-------ELQRINKDPL 118
           ++EFL+DKP FS+I  EF +F        I HNA FD+GF++                  
Sbjct: 60  SNEFLQDKPLFSAIADEFLEFIKGAE--LIIHNAPFDIGFLDYELSLESERRAAPMPTVE 117

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               +IDTL +ARRKHP  RN L++LC RY +  S R  HGALLDS +L+DVY+ M  G 
Sbjct: 118 SLCGVIDTLVMARRKHPGQRNTLDALCTRYDVDNSSRDLHGALLDSEILADVYLAMTGGQ 177

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---A 235
           + +    +  E                             EE   H+  +  L      A
Sbjct: 178 TALTLQSENREGGEQSNWVTGEIVRVQRAGLSLPVVPANAEESQAHEAYLDLLDNKSDGA 237

Query: 236 IWDRYISS 243
           +W R   S
Sbjct: 238 LWRRLDES 245


>gi|126667360|ref|ZP_01738332.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
 gi|126628116|gb|EAZ98741.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
          Length = 236

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 80/242 (33%), Positives = 128/242 (52%), Gaps = 10/242 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D  +  RIIEIG VEL++ + T R + V++ P GR+   EA+ +HGI
Sbjct: 1   MRQIVLDTETTGIDPNEGHRIIEIGCVELVERTLTGRNYHVYVNP-GREVEAEAVAIHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+EFL DKP F+ +  EF++F                            +   +   I+D
Sbjct: 60  TNEFLADKPLFAVVADEFFEFIRGAELVIHNAAFDVGFMDAEFGRLDGGRKTAEHCGIVD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR++HP  +N+LN+LCKRYG+  S+R  HGALLD+ +L+DVY+ +  G + +    
Sbjct: 120 TLAIARKRHPGQKNNLNALCKRYGVDNSNRELHGALLDAEILADVYLLLTGGQTALLLDA 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDRYIS 242
            + E       ++         R+     R + +E   H + +  + K A   +W + + 
Sbjct: 180 GSGEGAHGDGIRRV-----QAAREALQVIRASADEDLAHREFMAMMEKKAGSTVWSQVLG 234

Query: 243 SN 244
           + 
Sbjct: 235 AE 236


>gi|26246159|ref|NP_752198.1| DNA polymerase III subunit epsilon [Escherichia coli CFT073]
 gi|91209283|ref|YP_539269.1| DNA polymerase III subunit epsilon [Escherichia coli UTI89]
 gi|117622497|ref|YP_851410.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1]
 gi|227884794|ref|ZP_04002599.1| DNA polymerase III subunit epsilon [Escherichia coli 83972]
 gi|237707792|ref|ZP_04538273.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA]
 gi|300900029|ref|ZP_07118226.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1]
 gi|300936085|ref|ZP_07151027.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1]
 gi|300988192|ref|ZP_07178593.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1]
 gi|331656205|ref|ZP_08357167.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206]
 gi|331681596|ref|ZP_08382232.1| DNA polymerase III, epsilon subunit [Escherichia coli H299]
 gi|26106556|gb|AAN78742.1|AE016755_242 DNA polymerase III, epsilon chain [Escherichia coli CFT073]
 gi|91070857|gb|ABE05738.1| DNA polymerase III epsilon chain [Escherichia coli UTI89]
 gi|115511621|gb|ABI99695.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1]
 gi|226899002|gb|EEH85261.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA]
 gi|227838235|gb|EEJ48701.1| DNA polymerase III subunit epsilon [Escherichia coli 83972]
 gi|300356434|gb|EFJ72304.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1]
 gi|300407506|gb|EFJ91044.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1]
 gi|300458760|gb|EFK22253.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1]
 gi|307552062|gb|ADN44837.1| DNA polymerase III, epsilon chain [Escherichia coli ABU 83972]
 gi|307628303|gb|ADN72607.1| DNA polymerase III subunit epsilon [Escherichia coli UM146]
 gi|315289701|gb|EFU49094.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 110-3]
 gi|315292140|gb|EFU51492.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 153-1]
 gi|315300178|gb|EFU59415.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 16-3]
 gi|331054453|gb|EGI26462.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206]
 gi|331081170|gb|EGI52332.1| DNA polymerase III, epsilon subunit [Escherichia coli H299]
          Length = 246

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +T     + +  K      T EEL  H+  +  + K     +
Sbjct: 187 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|254245771|ref|ZP_04939092.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|124870547|gb|EAY62263.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
          Length = 305

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 9/243 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 62  MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 120

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ +  +  DF  +                       +         +ID
Sbjct: 121 TTEFLSDKPKFAEVAHQILDFVKDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVID 180

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 181 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 240

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYI 241
             +             +++ L          +++EL  H   +  L K+     +W +  
Sbjct: 241 LDDAGADGSAANGKRVSLAALDLAVVAA---SEDELAAHQAQLDELDKSVKGTCVWRQPA 297

Query: 242 SSN 244
            ++
Sbjct: 298 DTD 300


>gi|226945027|ref|YP_002800100.1| DNA polymerase III subunit epsilon [Azotobacter vinelandii DJ]
 gi|226719954|gb|ACO79125.1| DNA polymerase III, epsilon subunit [Azotobacter vinelandii DJ]
          Length = 244

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 80/246 (32%), Positives = 119/246 (48%), Gaps = 10/246 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+   +  RIIEIG VEL     T R F V+L P+ R     A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTEGHRIIEIGCVELQGRRLTGRHFHVYLQPD-RTVDEGAVAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRI 123
           TD+FL DKP F+ I  EF++F           A +  F     +   Q    D      +
Sbjct: 60  TDDFLADKPRFADIAEEFFEFIKGAQLIIHNAAFDIGFIEDEFSRLGQTERADVNAHCTV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR +HP  RN L++LCKRY +  S+R  HGALLD+ +L+DV++ M     Q + 
Sbjct: 120 LDTLLMARERHPGQRNSLDALCKRYDVDNSNRDLHGALLDAEILADVWLAMTG--GQTHL 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                        + +       +R +    R  ++EL  H + +  + K      +W +
Sbjct: 178 SLSGEGSENGGRAQASAIRRLSPERQRTRVIRAGEQELAAHAERLAAIEKAAGAPPLWLQ 237

Query: 240 YISSNQ 245
              + Q
Sbjct: 238 MEQAQQ 243


>gi|170732605|ref|YP_001764552.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|169815847|gb|ACA90430.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 244

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 9/243 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ +  +  DF  +                       +         +ID
Sbjct: 60  TTEFLSDKPKFAEVAHQILDFVKDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYI 241
             +             +++ L          +++EL  H   +  L K+     +W +  
Sbjct: 180 LDDAGADGSAANGKRVSLAALDLAVVAA---SEDELAAHQAQLDELDKSVKGTCVWRQPA 236

Query: 242 SSN 244
            ++
Sbjct: 237 DTD 239


>gi|110804261|ref|YP_687782.1| DNA polymerase III subunit epsilon [Shigella flexneri 5 str. 8401]
 gi|110613809|gb|ABF02476.1| DNA polymerase III, epsilon subunit [Shigella flexneri 5 str. 8401]
          Length = 246

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 129/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L +AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLVVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +      + +  K      T EEL  H+  +  + K     +
Sbjct: 187 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|110640430|ref|YP_668158.1| DNA polymerase III subunit epsilon [Escherichia coli 536]
 gi|300990975|ref|ZP_07179425.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1]
 gi|306813365|ref|ZP_07447558.1| DNA polymerase III subunit epsilon [Escherichia coli NC101]
 gi|110342022|gb|ABG68259.1| DNA polymerase III, epsilon chain [Escherichia coli 536]
 gi|300305641|gb|EFJ60161.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1]
 gi|305854128|gb|EFM54567.1| DNA polymerase III subunit epsilon [Escherichia coli NC101]
 gi|324009120|gb|EGB78339.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 57-2]
 gi|324011829|gb|EGB81048.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 60-1]
          Length = 246

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNATFDIGFMDYEFSLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +T     + +  K      T EEL  H+  +  + K     +
Sbjct: 187 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|215485371|ref|YP_002327802.1| DNA polymerase III subunit epsilon [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312964723|ref|ZP_07778974.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75]
 gi|215263443|emb|CAS07763.1| DNA polymerase III, epsilon subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312290744|gb|EFR18622.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75]
          Length = 243

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNATFDIGFMDYEFSLLKRDIPKTNT 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +      + +  K      T EEL  H+  +  + K     +
Sbjct: 184 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGTCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|330445182|ref|ZP_08308834.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489373|dbj|GAA03331.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 241

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 95/247 (38%), Positives = 139/247 (56%), Gaps = 17/247 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R IVFD ETTG++      +  RIIEIGAVE+++   T  TF V++ P+ R   
Sbjct: 1   MKATNQRIIVFDTETTGMNMSGPHYEGHRIIEIGAVEIINRKLTGNTFHVYIKPD-RPID 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114
           PEA+ +HGITDEFL  KPS++ I  EF DF +      +AHNA FD+GF++ E Q +   
Sbjct: 60  PEAIDVHGITDEFLVGKPSYAEIHQEFIDFIDGAE--LVAHNASFDIGFMDYEFQLMGSD 117

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            K   D  ++ DTL +A+R  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 118 LKKTEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLM 177

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           M  G + +     +  D   +   K +      +R          +EL  H++ +  +GK
Sbjct: 178 MTGGQTSLKLSSDSEGDSDTEFAIKRLTG----ERKGLKVILAAADELTAHEERLDLIGK 233

Query: 234 NA--IWD 238
            A  +W 
Sbjct: 234 KADVLWR 240


>gi|331645384|ref|ZP_08346488.1| DNA polymerase III, epsilon subunit [Escherichia coli M605]
 gi|331045546|gb|EGI17672.1| DNA polymerase III, epsilon subunit [Escherichia coli M605]
          Length = 246

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +T     + +  K      T EEL  H+  +  + K     +
Sbjct: 187 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGTCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|333008996|gb|EGK28455.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-218]
          Length = 243

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAVFDIGFMDYEFSLLKRDIPKTNT 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +      + +  K      T EEL  H+  +  + K     +
Sbjct: 184 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|323975918|gb|EGB71013.1| DNA polymerase III [Escherichia coli TW10509]
          Length = 243

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 131/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF ++        + HNA FD+GF++ E    +R       
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMNYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +T     + +  K      T EEL  H+  +  + K     +
Sbjct: 184 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|88857806|ref|ZP_01132448.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudoalteromonas tunicata D2]
 gi|88819423|gb|EAR29236.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudoalteromonas tunicata D2]
          Length = 252

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 89/237 (37%), Positives = 132/237 (55%), Gaps = 12/237 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG+D K   RIIEIG VEL++   T   F V++ P  R    EA+ +HGIT
Sbjct: 19  RQIVLDTETTGIDPKLGHRIIEIGCVELINRRFTGNNFHVYINPE-RDIEDEAIDVHGIT 77

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSRI 123
           ++FL+DKP F  I  EF+D+        + HNA FDVGF+++E QR+           ++
Sbjct: 78  NQFLRDKPKFHHIAQEFFDYIQGAE--LVIHNAAFDVGFMDSEFQRLRTGYPKTAQFCQV 135

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR  HP  +N+L++LC+RY I    R+ HGALLDS +LSDVY+ M  G   +N 
Sbjct: 136 LDTLKMARELHPGQKNNLDALCRRYNIDNGKRTMHGALLDSEILSDVYLAMTGGQVSLNL 195

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIW 237
             +T  +   +++ + +   S   R        T +E   H + +  + K     +W
Sbjct: 196 NTQTVGEENAQKQGEIIRLNS--DRAPLNIVYATADENQAHIERLALVEKKSSQCLW 250


>gi|170683943|ref|YP_001742338.1| DNA polymerase III subunit epsilon [Escherichia coli SMS-3-5]
 gi|331651120|ref|ZP_08352145.1| DNA polymerase III, epsilon subunit [Escherichia coli M718]
 gi|331671744|ref|ZP_08372540.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280]
 gi|170521661|gb|ACB19839.1| DNA polymerase III, epsilon subunit [Escherichia coli SMS-3-5]
 gi|281599565|gb|ADA72549.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2002017]
 gi|324111223|gb|EGC05206.1| DNA polymerase III [Escherichia fergusonii B253]
 gi|325496141|gb|EGC94000.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ECD227]
 gi|331050861|gb|EGI22913.1| DNA polymerase III, epsilon subunit [Escherichia coli M718]
 gi|331070733|gb|EGI42092.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280]
          Length = 246

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +      + +  K      T EEL  H+  +  + K     +
Sbjct: 187 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|167648966|ref|YP_001686629.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31]
 gi|167351396|gb|ABZ74131.1| DNA polymerase III, epsilon subunit [Caulobacter sp. K31]
          Length = 238

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 88/235 (37%), Positives = 135/235 (57%), Gaps = 9/235 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTG D K  DR++EIG +E++D+  T R+F  +  P  R    EA K+HG++
Sbjct: 3   REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEYCDP-LRDMPAEAQKVHGLS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            EFL  KP F  I   F +F  +  +  IAHNA FD  F+N EL++ N+ PL  SR +DT
Sbjct: 62  IEFLTGKPKFHEIADAFLEFVGD--SPVIAHNAAFDRSFVNFELEKCNRGPLPESRWVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LCKR+ I++  R KHGAL+D+HLL++VY++ + GG +      
Sbjct: 120 LAMAKKRFPGMYNSLDALCKRFKISLDSRDKHGALIDAHLLAEVYLE-LQGGKERALELT 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWDRY 240
                      +     S   R +PL  R T+EE   H   + +     A+W ++
Sbjct: 179 QVVAVNAVSAARAG---SYGARPRPLPPRSTEEERQLHAAFVQKNFKDKAVWIQF 230


>gi|30061767|ref|NP_835938.1| DNA polymerase III subunit epsilon [Shigella flexneri 2a str.
           2457T]
 gi|56479626|ref|NP_706156.2| DNA polymerase III subunit epsilon [Shigella flexneri 2a str. 301]
 gi|218547665|ref|YP_002381456.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ATCC
           35469]
 gi|30040009|gb|AAP15743.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str.
           2457T]
 gi|56383177|gb|AAN41863.2| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str. 301]
 gi|218355206|emb|CAQ87813.1| DNA polymerase III epsilon subunit [Escherichia fergusonii ATCC
           35469]
 gi|313646728|gb|EFS11187.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str.
           2457T]
 gi|332754119|gb|EGJ84489.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2747-71]
 gi|332761998|gb|EGJ92270.1| DNA polymerase III, epsilon subunit [Shigella flexneri 4343-70]
 gi|332764639|gb|EGJ94869.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-671]
 gi|332768614|gb|EGJ98795.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2930-71]
 gi|333009688|gb|EGK29138.1| DNA polymerase III, epsilon subunit [Shigella flexneri VA-6]
 gi|333010755|gb|EGK30181.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-272]
 gi|333021254|gb|EGK40507.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-227]
 gi|333022178|gb|EGK41418.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-304]
          Length = 243

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +      + +  K      T EEL  H+  +  + K     +
Sbjct: 184 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|301021445|ref|ZP_07185469.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1]
 gi|300398081|gb|EFJ81619.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1]
          Length = 246

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++ARR  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKVTDSLAVARRMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILADVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +T     + +  K      T EEL  H+  +  + K     +
Sbjct: 187 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|58696733|ref|ZP_00372277.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58698126|ref|ZP_00373049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225629990|ref|YP_002726781.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi]
 gi|58535372|gb|EAL59448.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58537085|gb|EAL60207.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225591971|gb|ACN94990.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi]
          Length = 231

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 94/240 (39%), Positives = 143/240 (59%), Gaps = 11/240 (4%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           ++K+R++V D ETTGLD++   RIIEIG VEL++   T + F  +L P  R     + K+
Sbjct: 2   ESKLRELVLDTETTGLDTESGHRIIEIGCVELINRIPTGKVFHRYLNPE-RDIPYHSFKI 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI++EFL+DKP FS +  EF DF    N   + HNA+FDV F+N EL ++N   +   R
Sbjct: 61  HGISEEFLEDKPLFSDVALEFLDFI--SNDILVIHNAEFDVKFLNMELSKLNAGLISSDR 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+K   S   LN+LCKR+ I++ +R  HGAL+D+ LL+ VY+++  G     
Sbjct: 119 VLDTLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTFL 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           F  + N+D      +  V N++      P       EE+DEH K +  +  N +W++YI 
Sbjct: 179 FDNECNQDSNSTFVQHKVRNLT------PREHSPNSEEIDEHKKLLDKIN-NTLWNKYIE 231


>gi|117619304|ref|YP_856106.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560711|gb|ABK37659.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 244

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 83/241 (34%), Positives = 124/241 (51%), Gaps = 13/241 (5%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+I+ D ETTG+++         RIIEIG VE+++   T   F V++ P+ R   PEA++
Sbjct: 8   RQIILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTGNHFHVYIKPD-RLVDPEAIQ 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGITDEFL+DKPSFS I  EF +F                          +N    D  
Sbjct: 67  VHGITDEFLRDKPSFSQIADEFIEFIRGAELIAHNAPFDVSFMDYEFGKLGLNFKTADIC 126

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            I DTL++AR   P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G +++
Sbjct: 127 GITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTKL 186

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           N   +++E+   +  + T        R      R + E    H+  +  + K     +W 
Sbjct: 187 NLATESSEN---ESNQDTSIRRLESNRPPLKVIRASAEIEAVHEARLDLVQKKGGACLWR 243

Query: 239 R 239
           +
Sbjct: 244 Q 244


>gi|119898345|ref|YP_933558.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
 gi|119670758|emb|CAL94671.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 239

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 81/236 (34%), Positives = 117/236 (49%), Gaps = 12/236 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD +  DR+IEIG VEL++ S T R F V++ P+ R    EA+ +HGI
Sbjct: 1   MRQIVLDTETTGLDWRTGDRVIEIGCVELVNRSLTGRHFHVYINPD-RGIDAEAVAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+EFL DKP F+ I   F DF  +        N           L    K  +  + +ID
Sbjct: 60  TEEFLADKPRFAGIVEAFEDFVRDAELVIHNANFDVGFLNCELGLLGRPKLDVLCAGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +A+ ++P  +  L++LC RY I   HR+ HGALLD+ LL++VY+ M  G   +    
Sbjct: 120 TLRMAKEQNPGKKASLDALCDRYEIDNGHRTLHGALLDAELLAEVYLAMTRGQESLMIAL 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
                   + +   V       R      R T+ E + H   +  + K      +W
Sbjct: 180 DEPAPGQVETDGLPVM------RVGVKVVRATEAECEAHAANLADIAKANKGLCLW 229


>gi|238759160|ref|ZP_04620328.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236]
 gi|238702576|gb|EEP95125.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236]
          Length = 259

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 86/249 (34%), Positives = 133/249 (53%), Gaps = 17/249 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 12  RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+DEFL DKPSF+ I  EF +F        + HNA FD+GF++ E + + +D      
Sbjct: 71  HGISDEFLADKPSFADITPEFLEFIRGAE--LVIHNAAFDIGFMDYEFRMLQQDIPKTET 128

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G +
Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            ++F  + ++ +    E                     ++EL  H+  +  + K     +
Sbjct: 189 SLSFSMEGDQSQNDSSEDIQRITRPAS---ALKIIYAAEDELLAHESRLDLVMKKGGSCL 245

Query: 237 WDRYISSNQ 245
           W   + S  
Sbjct: 246 WRMPLESED 254


>gi|325277453|ref|ZP_08143061.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
 gi|324097411|gb|EGB95649.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
          Length = 252

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/238 (32%), Positives = 118/238 (49%), Gaps = 4/238 (1%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+   +  RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDKRYVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDP 117
           + +HGITD FL  KP F+ +  EF++F           A +  F         Q+   D 
Sbjct: 60  INVHGITDAFLVGKPRFADVADEFFEFIQGATLVIHNAAFDVGFINNEFALLGQQHRADV 119

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                ++DTL +AR +HP  RN L++LCKRY I  S R  HGALLDS LL+DVY+ M  G
Sbjct: 120 SQYCTVLDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGG 179

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            + ++      +     +         +  R          +EL+ H + +  + K+A
Sbjct: 180 QTSLSLAGHGADAEGDGQAGGGSEIRRITGRAPGRVIMANAQELEAHAERLAAIAKSA 237


>gi|331661586|ref|ZP_08362509.1| DNA polymerase III, epsilon subunit [Escherichia coli TA143]
 gi|284919985|emb|CBG33040.1| DNA polymerase III epsilon subunit [Escherichia coli 042]
 gi|331060008|gb|EGI31972.1| DNA polymerase III, epsilon subunit [Escherichia coli TA143]
          Length = 246

 Score =  143 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 129/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P  R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPE-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF ++        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMNYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +      + +  K      T EEL  H+  +  + K     +
Sbjct: 187 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|195938587|ref|ZP_03083969.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           EC4024]
 gi|217324145|ref|ZP_03440229.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|217320366|gb|EEC28790.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|320638235|gb|EFX07963.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           G5101]
 gi|320643619|gb|EFX12763.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str.
           493-89]
 gi|320654630|gb|EFX22631.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660198|gb|EFX27708.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 246

 Score =  143 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +      + +  K      T EEL  H+  +  + K     +
Sbjct: 187 SMAFAM---EGETQQQQGEATIQRLVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|15799891|ref|NP_285903.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7
           EDL933]
 gi|15829465|ref|NP_308238.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           Sakai]
 gi|82775601|ref|YP_401948.1| DNA polymerase III subunit epsilon [Shigella dysenteriae Sd197]
 gi|168750163|ref|ZP_02775185.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757208|ref|ZP_02782215.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168763423|ref|ZP_02788430.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168776181|ref|ZP_02801188.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782940|ref|ZP_02807947.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789658|ref|ZP_02814665.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|168800383|ref|ZP_02825390.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|189403362|ref|ZP_02794985.2| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|208809432|ref|ZP_03251769.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813334|ref|ZP_03254663.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818379|ref|ZP_03258699.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400894|ref|YP_002268818.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|254791342|ref|YP_003076179.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223754|ref|ZP_05938035.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255836|ref|ZP_05948369.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281032|ref|YP_003497850.1| DNA polymerase III, epsilon subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|293413470|ref|ZP_06656119.1| DNA polymerase III [Escherichia coli B185]
 gi|309787110|ref|ZP_07681722.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617]
 gi|12512943|gb|AAG54511.1|AE005196_9 DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EDL933]
 gi|13359667|dbj|BAB33634.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|81239749|gb|ABB60459.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae Sd197]
 gi|187768434|gb|EDU32278.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015573|gb|EDU53695.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999632|gb|EDU68618.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355702|gb|EDU74121.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361034|gb|EDU79453.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366358|gb|EDU84774.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370736|gb|EDU89152.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|189377309|gb|EDU95725.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|208729233|gb|EDZ78834.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734611|gb|EDZ83298.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738502|gb|EDZ86184.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162294|gb|ACI39727.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209745474|gb|ACI71044.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|209745476|gb|ACI71045.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|209745478|gb|ACI71046.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|209745480|gb|ACI71047.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|209745482|gb|ACI71048.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|254590742|gb|ACT70103.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|290760905|gb|ADD54866.1| DNA polymerase III, epsilon subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|291433528|gb|EFF06501.1| DNA polymerase III [Escherichia coli B185]
 gi|308924688|gb|EFP70183.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617]
 gi|320190264|gb|EFW64914.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           EC1212]
 gi|320650355|gb|EFX18832.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str. H
           2687]
 gi|320665449|gb|EFX32511.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326338809|gb|EGD62628.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           1044]
 gi|326342399|gb|EGD66179.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           1125]
          Length = 243

 Score =  143 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +      + +  K      T EEL  H+  +  + K     +
Sbjct: 184 SMAFAM---EGETQQQQGEATIQRLVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|237746089|ref|ZP_04576569.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes HOxBLS]
 gi|229377440|gb|EEO27531.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes HOxBLS]
          Length = 248

 Score =  143 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 79/238 (33%), Positives = 114/238 (47%), Gaps = 12/238 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL +   DRIIEIG VE+L+   T+  F  ++ P  R + P+AL +HG+
Sbjct: 1   MRQIVLDTETTGLYANDGDRIIEIGCVEVLNRRVTDHHFHQYINPE-RDSHPDALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I   F DF                          +       S I D
Sbjct: 60  TTEFLSDKPKFAEIAQAFCDFIKGAELVIHNAPFDVGFLNAELARLNLPPVEELASCITD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L  AR   P  RN L++LC+R+ I  +HR+ HGALLD+ LL++VY+ M  G   +    
Sbjct: 120 SLLKARDMFPGRRNSLDALCERFEIDNTHRTLHGALLDAELLAEVYLAMTRGQETLEI-- 177

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-----AIWD 238
              E       ++       L   + L    T+EEL +H++ +  + K       +W 
Sbjct: 178 ---EKLTLSAAEEEARKNHPLSSLRILVLAPTEEELQKHEEVLDDIEKGNKGAPCVWR 232


>gi|323495336|ref|ZP_08100414.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
 gi|323310407|gb|EGA63593.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
          Length = 245

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 89/247 (36%), Positives = 141/247 (57%), Gaps = 19/247 (7%)

Query: 4   KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
            N+ R +V D ETTG++ +        RIIEIGAVE+++   T R F V++ P+ R+  P
Sbjct: 7   SNQHRIVVLDTETTGMNREGGPHYQDHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQP 65

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-- 115
           +A+++HGITDEFL DKP +  + +EF +F        +AHNA FDVGF++ E   ++   
Sbjct: 66  DAVEVHGITDEFLVDKPDYRDVHAEFLEFIKGAE--LVAHNAPFDVGFMDHEFGMLDPSI 123

Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M
Sbjct: 124 GKTVDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLM 183

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233
             G + + F    + +   +  K+         R      R T +EL+ H   +  + K 
Sbjct: 184 TGGQTSLQFNAGNSSEDGGEAIKRVASG-----RKSLKVLRATADELEAHQSRLDIVEKS 238

Query: 234 -NAIWDR 239
            + +W +
Sbjct: 239 GSCLWRQ 245


>gi|323526835|ref|YP_004228988.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001]
 gi|323383837|gb|ADX55928.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001]
          Length = 244

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 79/237 (33%), Positives = 115/237 (48%), Gaps = 10/237 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRIIE+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARTGDRIIEVGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I  EF DF    +                  L  +         IID
Sbjct: 60  TTEFLSDKPKFAEIADEFRDFIQGADLIIHNAPFDIGFLDAEFALLGLPPVSTHCGEIID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
                   +     V   SL      +    + EEL  H   +  L K     ++W 
Sbjct: 180 LGESHAGGEAHAPRVALDSLD----LVVIAASDEELAAHQAVLDGLDKAIKGTSVWR 232


>gi|332162776|ref|YP_004299353.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606882|emb|CBY28380.1| DNA polymerase III epsilon subunit [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667006|gb|ADZ43650.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861137|emb|CBX71400.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica W22703]
          Length = 260

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 82/249 (32%), Positives = 133/249 (53%), Gaps = 17/249 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+DEFL DKP+F+ I  EF +F        + HNA FD+GF++ E + + +D      
Sbjct: 66  HGISDEFLADKPTFADIAPEFIEFIRGAE--LVIHNAAFDIGFMDYEFRMLQQDIPKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCTITDSLLLARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            ++F  + ++ +    +                     ++EL  H+  +  + K     +
Sbjct: 184 SLSFSMEGDQSQNNSSDDIQRITRPAS---GLKIIYAAEDELAAHESRLDLVMKKGGSCL 240

Query: 237 WDRYISSNQ 245
           W   + +  
Sbjct: 241 WRMPLETED 249


>gi|317490808|ref|ZP_07949244.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920355|gb|EFV41678.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 244

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 89/242 (36%), Positives = 136/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+D+FL DKP+F+ I  EF +F        + HNA FD+GF++ E +++N+D      
Sbjct: 66  HGISDDFLLDKPTFADIADEFLEFIRGAE--LVIHNAPFDIGFMDYEFRKLNRDIPKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +ARR  P  RN L++LC RY I  + R+ HGALLDS +L+DVY+ M  G +
Sbjct: 124 FCKITDSLVMARRLFPGKRNSLDALCNRYEIDNTKRTLHGALLDSQILADVYLTMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  ++  ++     +       + K       R + EEL EH+  +  + K     +
Sbjct: 184 SLTFSMESEGEKPRPTGEVQKI---VRKMQALKVVRASAEELAEHEHRLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|16128202|ref|NP_414751.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. MG1655]
 gi|89107090|ref|AP_000870.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. W3110]
 gi|170079846|ref|YP_001729166.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|238899608|ref|YP_002925404.1| DNA polymerase III epsilon subunit [Escherichia coli BW2952]
 gi|256024146|ref|ZP_05438011.1| DNA polymerase III subunit epsilon [Escherichia sp. 4_1_40B]
 gi|118805|sp|P03007|DPO3E_ECOLI RecName: Full=DNA polymerase III subunit epsilon
 gi|42063|emb|CAA27661.1| unnamed protein product [Escherichia coli]
 gi|147679|gb|AAA24564.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|1786409|gb|AAC73320.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. MG1655]
 gi|4902952|dbj|BAA77886.1| DNA polymerase III epsilon subunit [Escherichia coli str. K12
           substr. W3110]
 gi|169887681|gb|ACB01388.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|238860830|gb|ACR62828.1| DNA polymerase III epsilon subunit [Escherichia coli BW2952]
 gi|315134900|dbj|BAJ42059.1| DNA polymerase III subunit epsilon [Escherichia coli DH1]
 gi|315616887|gb|EFU97504.1| DNA polymerase III, epsilon subunit [Escherichia coli 3431]
 gi|323943406|gb|EGB39558.1| DNA polymerase III [Escherichia coli E482]
 gi|332341543|gb|AEE54877.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli UMNK88]
          Length = 243

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +      + +  K      T EE+  H+  +  + K     +
Sbjct: 184 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEEIAAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|327254934|gb|EGE66544.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_7v]
          Length = 243

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF ++        + HNA FD+GF++ E    +R       
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMNYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +      + +  K      T EEL  H+  +  + K     +
Sbjct: 184 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|323963754|gb|EGB59256.1| DNA polymerase III [Escherichia coli M863]
          Length = 246

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF ++        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMNYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +      + +  K      T EEL  H+  +  + K     +
Sbjct: 187 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|170768002|ref|ZP_02902455.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627]
 gi|170123490|gb|EDS92421.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627]
          Length = 243

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 85/242 (35%), Positives = 132/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 66  HGIADEFLLDKPTFADVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M     
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTG--G 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL+ H+  +  + K     +
Sbjct: 182 QTSMAFAMEGETQQQQGEVTIQRI-VRQASKLRIVFATDEELEAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|259909387|ref|YP_002649743.1| DNA polymerase III subunit epsilon [Erwinia pyrifoliae Ep1/96]
 gi|224965009|emb|CAX56539.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae Ep1/96]
 gi|283479460|emb|CAY75376.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae DSM 12163]
          Length = 252

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 86/249 (34%), Positives = 132/249 (53%), Gaps = 17/249 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F V+L P+ R  
Sbjct: 1   MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLI 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI DEFL DKP+F+ I  +F  + N      + HNA FD+GF++ E  ++ +
Sbjct: 60  DPEAFGVHGIADEFLLDKPTFAQIADDFLAYINGAE--LVIHNASFDIGFMDYEFAKLQR 117

Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                    +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLDS +L++V++
Sbjct: 118 GIAKTETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G + + F     E    K++     +            R +++EL  H+  +  + 
Sbjct: 178 TMTGGQTSLAFSM---EGEREKQQGGETIHRIARPSSGLRVVRASEQELMAHEARLDLVE 234

Query: 233 KN---AIWD 238
           K     +W 
Sbjct: 235 KKGGSCLWR 243


>gi|68172041|ref|ZP_00545326.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998534|gb|EAM85303.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia chaffeensis str. Sapulpa]
          Length = 239

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 90/241 (37%), Positives = 133/241 (55%), Gaps = 9/241 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M     +R++V D ETTGLD    DR+IEIG VEL+D   T + F  ++ P  R     A
Sbjct: 1   MSYYKGVREVVLDTETTGLDPDGGDRVIEIGCVELIDRVFTGKVFHEYINPE-RDIPYYA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGIT + LKDKP FS I  +F +F    N   + HNA FD+ FI  EL RINK    
Sbjct: 60  TKIHGITIDMLKDKPKFSEIADKFLEFI--DNGILVIHNAGFDIKFIKMELDRINKSYNS 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +++DTL +AR+K P   + L++LC+R+ I++  R  HGALLD+ LL  VY+++M  G 
Sbjct: 118 DFQVVDTLVLARKKFPGVSSTLDALCRRFNISLQDRKFHGALLDATLLGKVYVQLMG-GL 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
           Q +  F  N +               ++   P    +++EE+ +H   ++ + KN IW+ 
Sbjct: 177 QRSLEFSYNNNVSSASNIDKRCENLCIE---PRIYEVSEEEIKKHKMLLEKI-KNPIWNN 232

Query: 240 Y 240
            
Sbjct: 233 I 233


>gi|310766705|gb|ADP11655.1| DNA polymerase III subunit epsilon [Erwinia sp. Ejp617]
          Length = 252

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 86/249 (34%), Positives = 132/249 (53%), Gaps = 17/249 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F V+L P+ R  
Sbjct: 1   MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLI 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI DEFL DKP+F+ I  +F  + N      + HNA FD+GF++ E  ++ +
Sbjct: 60  DPEAFGVHGIADEFLLDKPTFAQIADDFLAYINGAE--LVIHNASFDIGFMDYEFAKLQR 117

Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                    +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLDS +L++V++
Sbjct: 118 GIAKTETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G + + F     E    K++     +            R +++EL  H+  +  + 
Sbjct: 178 TMTGGQTSLAFSM---EGEREKQQDGETIHRIARPSSGLRVVRASEQELMAHEARLDLVE 234

Query: 233 KN---AIWD 238
           K     +W 
Sbjct: 235 KKGGSCLWR 243


>gi|300949353|ref|ZP_07163365.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1]
 gi|300958303|ref|ZP_07170446.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1]
 gi|301029642|ref|ZP_07192704.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1]
 gi|301645470|ref|ZP_07245407.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1]
 gi|307136810|ref|ZP_07496166.1| DNA polymerase III subunit epsilon [Escherichia coli H736]
 gi|331640665|ref|ZP_08341812.1| DNA polymerase III, epsilon subunit [Escherichia coli H736]
 gi|1552785|gb|AAB08637.1| DNA polymerase III epsilon chain [Escherichia coli]
 gi|260450588|gb|ACX41010.1| DNA polymerase III, epsilon subunit [Escherichia coli DH1]
 gi|299877469|gb|EFI85680.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1]
 gi|300315009|gb|EFJ64793.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1]
 gi|300451236|gb|EFK14856.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1]
 gi|301076259|gb|EFK91065.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1]
 gi|331040039|gb|EGI12247.1| DNA polymerase III, epsilon subunit [Escherichia coli H736]
          Length = 246

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +      + +  K      T EE+  H+  +  + K     +
Sbjct: 187 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEEIAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|238794443|ref|ZP_04638053.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909]
 gi|238726238|gb|EEQ17782.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909]
          Length = 259

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 86/249 (34%), Positives = 134/249 (53%), Gaps = 17/249 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 12  RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+DEFL DKP+F+ I  EF DF        + HNA FD+GF++ E + + +D      
Sbjct: 71  HGISDEFLADKPTFADITPEFLDFIRGAE--LVIHNAAFDIGFMDYEFRMLQQDIPKTET 128

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G +
Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            ++F  + ++ +    E          +          ++EL  H+  +  + K     +
Sbjct: 189 SLSFSMEGDQSQNDSSEDIQRITRPASE---LKIIYAAEDELLAHESRLDLVMKKGGSCL 245

Query: 237 WDRYISSNQ 245
           W   + S  
Sbjct: 246 WRMPLESED 254


>gi|188494951|ref|ZP_03002221.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638]
 gi|194438247|ref|ZP_03070339.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1]
 gi|254160329|ref|YP_003043437.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606]
 gi|312970313|ref|ZP_07784494.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70]
 gi|188490150|gb|EDU65253.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638]
 gi|194422911|gb|EDX38906.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1]
 gi|242376045|emb|CAQ30730.1| DNA polymerase III, epsilon subunit, subunit of DNA polymerase III,
           core enzyme and DNA polymerase III, holoenzyme
           [Escherichia coli BL21(DE3)]
 gi|253972230|gb|ACT37901.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606]
 gi|253976439|gb|ACT42109.1| DNA polymerase III subunit epsilon [Escherichia coli BL21(DE3)]
 gi|309700417|emb|CBI99706.1| DNA polymerase III epsilon subunit [Escherichia coli ETEC H10407]
 gi|310336962|gb|EFQ02100.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70]
          Length = 243

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +      + +  K      T +EL  H+  +  + K     +
Sbjct: 184 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDDELAAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|170021437|ref|YP_001726391.1| DNA polymerase III subunit epsilon [Escherichia coli ATCC 8739]
 gi|253774763|ref|YP_003037594.1| DNA polymerase III subunit epsilon [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|297518674|ref|ZP_06937060.1| DNA polymerase III subunit epsilon [Escherichia coli OP50]
 gi|300905642|ref|ZP_07123388.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1]
 gi|300919145|ref|ZP_07135678.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1]
 gi|300927906|ref|ZP_07143466.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1]
 gi|301305771|ref|ZP_07211857.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1]
 gi|169756365|gb|ACA79064.1| DNA polymerase III, epsilon subunit [Escherichia coli ATCC 8739]
 gi|253325807|gb|ACT30409.1| DNA polymerase III, epsilon subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|300402534|gb|EFJ86072.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1]
 gi|300413743|gb|EFJ97053.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1]
 gi|300464061|gb|EFK27554.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1]
 gi|300838946|gb|EFK66706.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1]
 gi|315253528|gb|EFU33496.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 85-1]
 gi|323963578|gb|EGB59135.1| DNA polymerase III [Escherichia coli H489]
 gi|323972507|gb|EGB67713.1| DNA polymerase III [Escherichia coli TA007]
          Length = 246

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +      + +  K      T +EL  H+  +  + K     +
Sbjct: 187 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDDELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|238755084|ref|ZP_04616431.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473]
 gi|238706644|gb|EEP99014.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473]
          Length = 254

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+DEFL DKP+F+ I  EF +F        + HNA FD+GF+  E + + +   +   
Sbjct: 66  HGISDEFLLDKPTFADIAPEFIEFIRGAE--LVIHNATFDIGFMYYEFRMLQQAIPNTDT 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +LS+VY+ M  G +
Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILSEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            ++F  + ++++             +             EELD H + +  + K     +
Sbjct: 184 SLSFSMEGDQNQSDSAADIQRI---VRPTSGLTIIYANDEELDAHHQRLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|157962223|ref|YP_001502257.1| DNA polymerase III subunit epsilon [Shewanella pealeana ATCC
           700345]
 gi|157847223|gb|ABV87722.1| DNA polymerase III, epsilon subunit [Shewanella pealeana ATCC
           700345]
          Length = 242

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 16/240 (6%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+I+ D ETTG++          RIIEIG VE+++   T R +  ++ P  +    EA+ 
Sbjct: 9   RQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVVNRRLTGRHYHEYINPQ-QPIDEEAIA 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDPLDP 120
           +HGIT+EF+ DKP F  +   F +F +         N          + LQ +     D 
Sbjct: 68  VHGITNEFVADKPKFHEVAQSFIEFIDGAEIVAHNANFDVSFMDHEFSMLQPLGPKTADI 127

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +I+D+L+IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+ M  G ++
Sbjct: 128 CQILDSLAIAKHLHPGQKNNLDALCKRYGIDNSARDLHGALLDAEILADVYLLMTGGQTK 187

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWD 238
            N   +         ++ +        R K      + +EL  H++ +  + K+   +W 
Sbjct: 188 FNLSSEKAGQEGGGIQRLSA------DRTKLKVIAASADELIRHEERLDLVAKSGQCLWR 241


>gi|331007390|ref|ZP_08330576.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989]
 gi|330418798|gb|EGG93278.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989]
          Length = 239

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 80/240 (33%), Positives = 129/240 (53%), Gaps = 10/240 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+  K  RIIEIG VEL +   T R +  ++ P  R+   +A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPSKGHRIIEIGCVELENRKLTGRHYHQYIQPE-REIEAQAMEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA--HNAKFDVGFINAELQRINKDPLDPSRI 123
           T+E+LK KP+F  I  EF  F +           +  F    +     +  ++      +
Sbjct: 60  TNEYLKGKPTFVQIMDEFMAFVDGAELIIHNAPFDVGFINNELAKYGDKKYQNITHYCGV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +AR+KHP  +N+L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G   ++ 
Sbjct: 120 IDTLVMARQKHPGQKNNLDALCKRYGVDNSQRDLHGALLDSEILADVYLLMTGGQRALSL 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239
              ++ED     +   +  ++ +        + + EEL +H++ +  + K      +W +
Sbjct: 180 SSASSEDDSGSRQVTGIRRLAEV--PNLPIIQASPEELAQHEQKLAAIDKASQGQCVWLK 237


>gi|161615575|ref|YP_001589540.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161364939|gb|ABX68707.1| hypothetical protein SPAB_03350 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 246

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 129/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP F+ +  EF D+  +     + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYIRDAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +    R   E         + +  +      ++EEL  H+  +  + K     +
Sbjct: 187 SMTFAMEGETQRQQGEATIQRI---VRQASRLRVVFASEEELAAHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|329847376|ref|ZP_08262404.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum
           C19]
 gi|328842439|gb|EGF92008.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum
           C19]
          Length = 229

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 86/232 (37%), Positives = 134/232 (57%), Gaps = 8/232 (3%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +IV D ETTG+D  K  R+IEIG +E+ D   T RTF  F+ P  R+  P+A+++HGI++
Sbjct: 4   EIVLDTETTGIDHRKGHRLIEIGCIEIEDLLPTGRTFHHFVDPE-REIEPDAIRVHGISN 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++ KP F  I  E  +F  ++     AHNA FD GFIN E++R+++      + IDTL
Sbjct: 63  EKVRGKPKFGQIADELCEFIGDKRII--AHNAAFDRGFINMEMERLSRVCHPDDQWIDTL 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            +AR K P   N L++LC+R+ I+++ R  HGAL+D+ LL+ VY++++  G +     + 
Sbjct: 121 ELARNKFPGMANSLDALCRRFNISLAERDLHGALIDARLLASVYLELLG-GKERGLDLEM 179

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-LGKNAIWD 238
              R   E  +    IS   R +PL  RIT  E+  H+  +   L   ++W 
Sbjct: 180 ASARI--EAVQVANPISYGARPRPLAPRITAAEVAAHEAFVAKYLKDKSLWK 229


>gi|323259856|gb|EGA43487.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
          Length = 243

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 128/242 (52%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 66  HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +    R   EE        + +  +      + EEL  H+  +  + K     +
Sbjct: 184 SMTFAMEGETQRQQGEETIQRI---VRQASRLRVVFASDEELAAHESRLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|168238647|ref|ZP_02663705.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194736138|ref|YP_002113281.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|204927010|ref|ZP_03218212.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194711640|gb|ACF90861.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288607|gb|EDY27984.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204323675|gb|EDZ08870.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322614544|gb|EFY11473.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620062|gb|EFY16934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623357|gb|EFY20196.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629345|gb|EFY26124.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632065|gb|EFY28819.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637197|gb|EFY33899.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640310|gb|EFY36970.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645923|gb|EFY42443.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652378|gb|EFY48732.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652582|gb|EFY48932.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660392|gb|EFY56628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664545|gb|EFY60738.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669402|gb|EFY65552.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670948|gb|EFY67081.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678813|gb|EFY74868.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681842|gb|EFY77867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687968|gb|EFY83934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194322|gb|EFZ79517.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197738|gb|EFZ82870.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203466|gb|EFZ88491.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206789|gb|EFZ91742.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213392|gb|EFZ98193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214685|gb|EFZ99436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221462|gb|EGA05878.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226220|gb|EGA10436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229992|gb|EGA14112.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233731|gb|EGA17820.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238575|gb|EGA22633.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244263|gb|EGA28272.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246424|gb|EGA30407.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252193|gb|EGA36046.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258046|gb|EGA41725.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323265129|gb|EGA48628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272692|gb|EGA56099.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 246

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 128/242 (52%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +    R   EE        + +  +      + EEL  H+  +  + K     +
Sbjct: 187 SMTFAMEGETQRQQGEETIQRI---VRQASRLRVVFASDEELAAHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|238790133|ref|ZP_04633910.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC
           33641]
 gi|238721802|gb|EEQ13465.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC
           33641]
          Length = 259

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 84/249 (33%), Positives = 134/249 (53%), Gaps = 17/249 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 12  RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+DEFL DKP+F+ I  EF +F        + HNA FD+GF++ E + + +D      
Sbjct: 71  HGISDEFLADKPTFADITPEFLEFIRGAE--LVIHNAAFDIGFMDYEFRMLQQDIPKTET 128

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G +
Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            ++F  + ++ +    E        +             EEL+ H+  +  + K     +
Sbjct: 189 SLSFSMEGDQSQNDSSEDIQRI---IRPASGLKIIYAADEELEAHNSRLDLVMKKGGSCL 245

Query: 237 WDRYISSNQ 245
           W   +   +
Sbjct: 246 WRMPLEPEE 254


>gi|315126186|ref|YP_004068189.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
 gi|315014700|gb|ADT68038.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
          Length = 237

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 84/238 (35%), Positives = 132/238 (55%), Gaps = 13/238 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG+D K   RIIEIG VEL++   T   F V++ P  R    EA+ +HGIT
Sbjct: 4   RQIVLDTETTGIDPKQGHRIIEIGCVELMNRRLTGNNFHVYINPQ-RSIEEEAIDVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSRI 123
           +EFL+DKP F  I  EF+D+  +     + HNA FD+G ++ E     +  ++  D   +
Sbjct: 63  NEFLRDKPLFRDIAQEFFDYIKDAE--LVIHNAPFDIGHMDNEFALLNQGYQNTHDFCGV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR  HP  +N+L++LC+RY +  + R+ HGALLDS +L+DVY+ M     Q+  
Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDVDNTKRTLHGALLDSEILADVYLAMTG--GQVKL 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
               N+D   +++K  +  ++   R   +    ++ E   H   +  + K     +W 
Sbjct: 179 NLNQNKDDSSEDQKGGIRRLN-SDRAPLVVVAASEAEQSAHQSRLDIVQKEGGHCLWR 235


>gi|73667124|ref|YP_303140.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia canis str. Jake]
 gi|72394265|gb|AAZ68542.1| DNA polymerase III, epsilon subunit :DNA polymerase 3, epsilon
           subunit [Ehrlichia canis str. Jake]
          Length = 239

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 91/239 (38%), Positives = 137/239 (57%), Gaps = 9/239 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M     +R++V D ETTGLD    DRIIEIG VEL+D   T + F  ++ P  R     A
Sbjct: 1   MSYYKGVREVVLDTETTGLDPDGGDRIIEIGCVELIDRVFTGKVFHEYINPE-RDIPYYA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGIT + LKDKP FS I  +F +F    N+  + HNA FD+ FI  EL +I KD   
Sbjct: 60  TKIHGITIDMLKDKPKFSEIADKFLEFV--NNSVLVIHNAGFDIKFIKMELDKIQKDYDS 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +++DTL +AR+K P   + L++LC+R+ I++  R  HGALLD+ LL  VY+++M  G 
Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCRRFNISLQDRKFHGALLDATLLGKVYVQLMG-GL 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           Q +  F  + +     +   + N       +P F  +++EE+ +H   ++ + KN IW+
Sbjct: 177 QRSLDFSYSNNII---DTSNINNQCEDVAIEPRFYEVSEEEITQHKMLLEKI-KNPIWN 231


>gi|311694693|gb|ADP97566.1| DNA polymerase 3, epsilon subunit [marine bacterium HP15]
          Length = 239

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 80/243 (32%), Positives = 124/243 (51%), Gaps = 11/243 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D  +  RIIEIG VEL++   T R + V++ P+ R+   EA+ +HGI
Sbjct: 4   MRQIVLDTETTGIDPAEGHRIIEIGCVELMERQLTGRNYHVYINPD-REVEAEAITVHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+EFL DKP F+ I  EF++F                         +  +   D   I+D
Sbjct: 63  TNEFLADKPRFAEIADEFFEFIKGAELVIHNAAFDVGFMDSEFARLKPVRKTADHCGIVD 122

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L+IAR +HP  +N+L++LCKRYG+  S+R  HGALLD+ +L+DVY+ +  G + ++   
Sbjct: 123 SLAIARARHPGQKNNLDALCKRYGVDNSNRDLHGALLDAEILADVYLLLTGGQTALSLD- 181

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDRYIS 242
                                 R      R +  E + H + +  L K A   +W + + 
Sbjct: 182 ----AGSENGGGNGGIRRLPADRAPLSVVRASSSEAEAHQEFMSLLEKQAGETVWGK-LQ 236

Query: 243 SNQ 245
           S +
Sbjct: 237 SPE 239


>gi|62178830|ref|YP_215247.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224582105|ref|YP_002635903.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62126463|gb|AAX64166.1| DNA polymerase III, epsilon subunit, 3-5 exonucleolytic
           proofreading function [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224466632|gb|ACN44462.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322713281|gb|EFZ04852.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 246

 Score =  142 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 128/242 (52%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +    R   E         + +  +      T+EEL  H+  +  + K     +
Sbjct: 187 SMTFAMEGETQRQQGEATIQRI---VRQASRLRVVFATEEELAAHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|56479129|ref|YP_160718.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum
           EbN1]
 gi|56315172|emb|CAI09817.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum
           EbN1]
          Length = 239

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 80/236 (33%), Positives = 123/236 (52%), Gaps = 12/236 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD +  DR+IEIG VELL+ + T R + V++ P  R    EA+ +HGI
Sbjct: 1   MRQIVLDTETTGLDWRNGDRVIEIGCVELLNRNLTGRHYHVYINPE-RGIDAEAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T++FL DKP+FS+I +EF DF  +        +                K     + +ID
Sbjct: 60  TEDFLADKPTFSAIAAEFEDFIRDAELIIHNASFDVGFLNHELSRLGRGKLDSLCAGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +A+ ++P  +  L++LC R+ I  + R+ HGALLD+ LL++VY+ M  G   +    
Sbjct: 120 TLKMAKEQNPGKKASLDALCDRHQIDNASRTLHGALLDAELLAEVYLAMTRGQESLIMVL 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237
           +       +          L+ R      R + EEL EH++ +Q + K      +W
Sbjct: 180 EEPVPGSAEAGGV------LVDRPPLKVLRASGEELAEHERVLQDIAKGTKGTCLW 229


>gi|89075025|ref|ZP_01161470.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
 gi|89049264|gb|EAR54828.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
          Length = 241

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 94/247 (38%), Positives = 141/247 (57%), Gaps = 17/247 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R IVFD ETTG++      +  RI+EIGAVE+++   T +TF V++ P+ R   
Sbjct: 1   MKATNQRIIVFDTETTGMNMTGPHYEGHRIVEIGAVEIINRKLTGKTFHVYIKPD-RPID 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114
           PEA+ +HGITDEFL  KPS++ I  EF DF +      +AHNA FD+GF++ E Q +   
Sbjct: 60  PEAIDVHGITDEFLIGKPSYADIHQEFIDFIDGAE--LVAHNASFDIGFMDYEFQLMGSD 117

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            K   D  ++ DTL +A+R  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 118 LKKTEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLM 177

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           M  G + +        D   +   K +    + +R        + +EL  H++ +  +GK
Sbjct: 178 MTGGQTSLKLSGDNEGDSEKEFAIKRL----VGERKGLKVICASADELVSHEERLDLIGK 233

Query: 234 NA--IWD 238
            A  +W 
Sbjct: 234 KADVLWR 240


>gi|238913716|ref|ZP_04657553.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 246

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 128/242 (52%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPVFADVIDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +    R   E         + +  +      ++EEL  H+  +  + K     +
Sbjct: 187 SMTFAMEGETQRQQGEATIQRI---VRQASRLRVVFASEEELAAHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|167995093|ref|ZP_02576183.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232195|ref|ZP_02657253.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168239998|ref|ZP_02664930.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261338|ref|ZP_02683311.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465317|ref|ZP_02699199.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819164|ref|ZP_02831164.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194445947|ref|YP_002039498.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449519|ref|YP_002044248.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194471875|ref|ZP_03077859.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197248793|ref|YP_002145264.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263319|ref|ZP_03163393.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198244203|ref|YP_002214220.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389565|ref|ZP_03216176.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|213419655|ref|ZP_03352721.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213428417|ref|ZP_03361167.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213646369|ref|ZP_03376422.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213852644|ref|ZP_03382176.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289828784|ref|ZP_06546543.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|194404610|gb|ACF64832.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407823|gb|ACF68042.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458239|gb|EDX47078.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195631798|gb|EDX50318.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197212496|gb|ACH49893.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241574|gb|EDY24194.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197938719|gb|ACH76052.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602010|gb|EDZ00556.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205327163|gb|EDZ13927.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333347|gb|EDZ20111.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339912|gb|EDZ26676.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344083|gb|EDZ30847.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349720|gb|EDZ36351.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|312911229|dbj|BAJ35203.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320084513|emb|CBY94305.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224918|gb|EFX49979.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323128579|gb|ADX16009.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326621964|gb|EGE28309.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326626623|gb|EGE32966.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 246

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 128/242 (52%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +    R   E         + +  +      ++EEL  H+  +  + K     +
Sbjct: 187 SMTFAMEGETQRQQGEATIQRI---VRQASRLRVVFASEEELAAHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|16759250|ref|NP_454867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16763647|ref|NP_459262.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29142975|ref|NP_806317.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56414616|ref|YP_151691.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363544|ref|YP_002143181.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|205351595|ref|YP_002225396.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207855776|ref|YP_002242427.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|60392203|sp|P0A1G9|DPO3E_SALTY RecName: Full=DNA polymerase III subunit epsilon
 gi|60392204|sp|P0A1H0|DPO3E_SALTI RecName: Full=DNA polymerase III subunit epsilon
 gi|25299960|pir||AF0534 DNA polymerase III epsilon chain [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|1172157|gb|AAA86422.1| dnaQ [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|1794290|gb|AAC44792.1| DNA polymerase III epsilon chain [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16418764|gb|AAL19221.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16501541|emb|CAD08718.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138607|gb|AAO70177.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56128873|gb|AAV78379.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095021|emb|CAR60567.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|205271376|emb|CAR36169.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206707579|emb|CAR31853.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261245489|emb|CBG23279.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267991951|gb|ACY86836.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156885|emb|CBW16361.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|332987210|gb|AEF06193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 243

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 128/242 (52%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 66  HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +    R   E         + +  +      ++EEL  H+  +  + K     +
Sbjct: 184 SMTFAMEGETQRQQGEATIQRI---VRQASRLRVVFASEEELAAHESRLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|120599049|ref|YP_963623.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1]
 gi|146292880|ref|YP_001183304.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32]
 gi|120559142|gb|ABM25069.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1]
 gi|145564570|gb|ABP75505.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32]
 gi|319426198|gb|ADV54272.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200]
          Length = 242

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 16/246 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+IV D ETTG++          RIIEIG VE+++   T R F  ++ P G+  
Sbjct: 3   IISNASRQIVLDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA+ +HGITDE + ++P F  I  +F +F +         N           +     
Sbjct: 62  DPEAIAVHGITDERVANEPRFHQIAQQFIEFIDGAEIVAHNANFDVSFMDHEFSMLPSKG 121

Query: 116 DPLDPSRIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                   I       +  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+ M
Sbjct: 122 PKTMDICDILDTLEIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVYLIM 181

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233
             G ++ N   +         ++    +++            + +EL  H++ +  + K 
Sbjct: 182 TGGQTKFNLSNEEVGQEAGGIQRFAPNSLN------LKVISASADELAMHEQRLDLVAKS 235

Query: 234 -NAIWD 238
              +W 
Sbjct: 236 GKCLWR 241


>gi|320538891|ref|ZP_08038567.1| DNA polymerase III epsilon subunit [Serratia symbiotica str.
           Tucson]
 gi|320031051|gb|EFW13054.1| DNA polymerase III epsilon subunit [Serratia symbiotica str.
           Tucson]
          Length = 247

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 85/249 (34%), Positives = 131/249 (52%), Gaps = 18/249 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI     R+IV D ETTG++      +  RIIEIGAVE+++   T R + V++ P+ R  
Sbjct: 1   MISTTT-RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPD-RLV 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI+DEFL DKP+F  I  EF DF        + HNA FD+GF++ E + + +
Sbjct: 59  DPEAYGVHGISDEFLADKPTFDQIADEFLDFIRGGE--LVIHNAAFDIGFMDHEFRLLQQ 116

Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                     I D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+
Sbjct: 117 GIPKTETFCTITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYL 176

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231
            M  G + + F  + +  +    +        +           + +EL  H+  +  + 
Sbjct: 177 AMTGGQTSMTFQMEGDTQQTNSAQDIQRI---VRPAMAMKVVYASDKELAAHEARLDLVA 233

Query: 232 --GKNAIWD 238
             G + +W 
Sbjct: 234 QKGGSCLWR 242


>gi|229590113|ref|YP_002872232.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens SBW25]
 gi|229361979|emb|CAY48879.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens SBW25]
          Length = 248

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 86/242 (35%), Positives = 123/242 (50%), Gaps = 11/242 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+      RIIEIG VEL+    T R F V+L P+ R +   A+ +HGIT
Sbjct: 4   RSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPD-RDSDEGAIGVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           DEFLK KP F+ +  EF++F N         A +  F         Q    D      I+
Sbjct: 63  DEFLKGKPRFAEVADEFFEFINGAQLIIHNAAFDVGFINNEFALMGQTDRADISKHCSIL 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182

Query: 185 FKTNEDRFFKEEKKTVP---NISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
              ++     E     P         R      R ++++L EH   ++ + K+    A+W
Sbjct: 183 GNASDGTGSAEGSGNRPSEIRRLPADRKPTPIIRASEQDLAEHAARLEAIAKSAGAPALW 242

Query: 238 DR 239
            +
Sbjct: 243 TQ 244


>gi|104782586|ref|YP_609084.1| DNA polymerase III subunit epsilon [Pseudomonas entomophila L48]
 gi|95111573|emb|CAK16293.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudomonas entomophila L48]
          Length = 251

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 81/238 (34%), Positives = 117/238 (49%), Gaps = 5/238 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+      RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDQRLVILDTETTGMPVGDGHRIIEIGCVEVMGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDP 117
           + +HGITD FL  KP F  +  EF++F           A +  F         Q    D 
Sbjct: 60  IGVHGITDAFLVGKPRFGDVAQEFFEFIEGATLVIHNAAFDVGFINNEFALLGQHDRADI 119

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                I+DTL +AR +HP  RN L++LCKRYGI  S R  HGALLDS LL+DVY+ M  G
Sbjct: 120 SQHCSILDTLMMARSRHPGQRNSLDALCKRYGIDNSGRELHGALLDSELLADVYLAMTGG 179

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            + ++      +    +    +     +  R         +EEL  H + +  + K+A
Sbjct: 180 QTSLSLAGDGAQSEDGQGGTGSEIR-RISGRAAGRVIMANEEELQAHAERLAAIAKSA 236


>gi|113970494|ref|YP_734287.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-4]
 gi|114047729|ref|YP_738279.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-7]
 gi|113885178|gb|ABI39230.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4]
 gi|113889171|gb|ABI43222.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7]
          Length = 242

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 83/248 (33%), Positives = 121/248 (48%), Gaps = 20/248 (8%)

Query: 2   IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++          RIIEIG VE+++   T R +  ++ P G+  
Sbjct: 3   IISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA+ +HGITDE + ++P F  I  EF DF +       AHNA FDV F++ E   +  
Sbjct: 62  DPEAIAVHGITDERVANEPRFHQIAQEFIDFISGAEIV--AHNANFDVSFMDHEFSLLQP 119

Query: 116 DPLDPSRIIDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                S I + L         HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+
Sbjct: 120 LGPKTSDICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRLYHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M     Q  F     E        +     SL         R + +EL  H++ +  + 
Sbjct: 180 AMTG--GQTKFNLSNEEVGQEAGGIQRFDPTSL----NLKVIRASADELVMHEERLDLVA 233

Query: 233 K--NAIWD 238
           K    +W 
Sbjct: 234 KSGKCLWR 241


>gi|120554453|ref|YP_958804.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
 gi|120324302|gb|ABM18617.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
          Length = 236

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 82/237 (34%), Positives = 124/237 (52%), Gaps = 10/237 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D  +  RIIEIG VE+++   T R + V++ P  R+   EA+ +HGI
Sbjct: 1   MRQIVLDTETTGIDPNEGHRIIEIGCVEVIERELTGRNYHVYINPE-REVEAEAITVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+EFL DKP F+ +  EF++F                         +  +   D   I+D
Sbjct: 60  TNEFLADKPKFAEVADEFFEFIKGAELVIHNAAFDVGFMDSEFARLKPVRKTADHCGIVD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L+IAR+KHP  +N+L++LCKRYG+  S+R  HGALLD+ +L+DVY+ M  G + ++   
Sbjct: 120 SLAIARKKHPGQKNNLDALCKRYGVDNSNRDLHGALLDAEILADVYLLMTGGQTALSLD- 178

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDR 239
                    E           +R      R T +E   HD+ +  + K A   +W R
Sbjct: 179 ----AGSGDEGGDGGIRRISGERAPLAVVRATSDEASAHDEFMAMMEKQAGETVWSR 231


>gi|190571471|ref|YP_001975829.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213018874|ref|ZP_03334682.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190357743|emb|CAQ55194.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212995825|gb|EEB56465.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 234

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 95/241 (39%), Positives = 142/241 (58%), Gaps = 11/241 (4%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           K+++R+IV D ETTGLD+K   RIIEIG VEL++   T +TF  +L P  R     + K+
Sbjct: 2   KSRLREIVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPE-RDIPYHSFKI 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI++EFL+DKP FS +  EF DF    N   + HNA+FDV F+N EL ++N   +   R
Sbjct: 61  HGISEEFLEDKPLFSDVALEFLDFI--SNDILVIHNAEFDVKFLNMELGKLNAGLISSDR 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+K   S   LN+LCKR+ I++  R  HGAL+D+ LL+ VY+++  G     
Sbjct: 119 VLDTLPLARKKFVGSPASLNALCKRFDISLEGRELHGALVDAQLLAKVYVELTGGLQTFL 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           F  +  +D      +  V N++  +         + +E+DEH K +  +  N +W  YI 
Sbjct: 179 FNNECAQDNNSTFIQHKVRNLARRE------HSPSIKEIDEHKKLLDKIN-NPLWKEYIE 231

Query: 243 S 243
           S
Sbjct: 232 S 232


>gi|33591629|ref|NP_879273.1| DNA polymerase III subunit epsilon [Bordetella pertussis Tohama I]
 gi|33598340|ref|NP_885983.1| DNA polymerase III subunit epsilon [Bordetella parapertussis 12822]
 gi|33603250|ref|NP_890810.1| DNA polymerase III subunit epsilon [Bordetella bronchiseptica RB50]
 gi|33566898|emb|CAE39114.1| DNA polymerase III, epsilon chain [Bordetella parapertussis]
 gi|33571272|emb|CAE44737.1| DNA polymerase III, epsilon chain [Bordetella pertussis Tohama I]
 gi|33577374|emb|CAE34639.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica RB50]
 gi|332381049|gb|AEE65896.1| DNA polymerase III subunit epsilon [Bordetella pertussis CS]
          Length = 244

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 77/237 (32%), Positives = 113/237 (47%), Gaps = 11/237 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTGLD  +  RI+EIG VE+++   T     ++L P+ R + PEAL +HG+
Sbjct: 1   MRQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNPD-RDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ +  +F  F  +                   +    +        I+D
Sbjct: 60  TTEFLADKPRFAEVAEQFLAFIADAELIAHNAAFDVKFFNAELQRIGRDPLNTHCENIVD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L  AR  HP  RN L++LC RYGI+ +HR+ HGALLDS LL++V++ M  G   +    
Sbjct: 120 SLLHARSLHPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLIDV 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                           + S+           ++ EL EH   +Q L K       W 
Sbjct: 180 DDQGANANGALVLGKFDASV-----LTVLAASEAELAEHAAYLQALDKAVGGACAWR 231


>gi|209517197|ref|ZP_03266042.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
 gi|209502333|gb|EEA02344.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
          Length = 244

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 10/237 (4%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+ +  DRI+E+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNPRGGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I  +F DF  + +                  L  +         IID
Sbjct: 60  TTEFLSDKPKFAEIIDQFRDFIQDADLIIHNAPFDIGFLDTEFALLGLPPVSTYCGEIID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLAQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
                        T      L+  + +    + +E   H+  +  L K     ++W 
Sbjct: 180 LGEAQTGGD----THAPRVALESLELVVVAASDDESAAHEAVLDDLDKAVKGTSVWR 232


>gi|117920808|ref|YP_870000.1| DNA polymerase III subunit epsilon [Shewanella sp. ANA-3]
 gi|117613140|gb|ABK48594.1| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3]
          Length = 242

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 86/248 (34%), Positives = 125/248 (50%), Gaps = 20/248 (8%)

Query: 2   IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++          RIIEIG VE+++   T R F  ++ P G+  
Sbjct: 3   IISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA+ +HGITDE + ++P F  I  EF DF +       AHNA FDV F++ E   +  
Sbjct: 62  DPEAIAVHGITDERVANEPRFHQIAQEFIDFISGAEIV--AHNANFDVSFMDHEFSLLQP 119

Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                     I+D+L IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+
Sbjct: 120 LGPKTSEICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRLYHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M     Q  F    +E        +     SL           + +EL  H+K +  + 
Sbjct: 180 AMTG--GQTKFNLSNDEVGQEAGGIQRFDPASL----NLKVISASADELVMHEKRLDLVA 233

Query: 233 K--NAIWD 238
           K    +W 
Sbjct: 234 KSGKCLWR 241


>gi|256823144|ref|YP_003147107.1| DNA polymerase III subunit epsilon [Kangiella koreensis DSM 16069]
 gi|256796683|gb|ACV27339.1| DNA polymerase III, epsilon subunit [Kangiella koreensis DSM 16069]
          Length = 233

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 92/237 (38%), Positives = 138/237 (58%), Gaps = 11/237 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+     RIIEIG VEL++   T   +  +L P+ R+    A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPYDGHRIIEIGCVELVNRKFTGNHYHQYLQPD-REIDQGAMEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122
           T+EFL+DKP F  +  EF +F        + HNA FDVGF++ EL  ++       D   
Sbjct: 60  TNEFLEDKPRFVDVVDEFLEFIEGAE--LVIHNAPFDVGFLDHELSMLDSSKGKLSDYCT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+ HP  RN L++LCKRY I  SHR  HGALLDS +L+DVY++M  G + + 
Sbjct: 118 VLDTLVLARQMHPGQRNSLDALCKRYEIDNSHRELHGALLDSEILADVYLRMTGGQTSLT 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            G    ++   ++  +T        R      + T++E  EH + + +L  +AIW++
Sbjct: 178 LG---RQNAANQQTTETTVRRISANRQPLKVIKATEQESKEHQQKLSSLN-DAIWNQ 230


>gi|161504623|ref|YP_001571735.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865970|gb|ABX22593.1| hypothetical protein SARI_02738 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 246

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 127/242 (52%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +    R   E         + +  +      T EEL  H+  +  + K     +
Sbjct: 187 SMTFAIEGETQRQQGEATIQRI---VRQASRLRVVFATDEELAAHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|167623805|ref|YP_001674099.1| DNA polymerase III subunit epsilon [Shewanella halifaxensis
           HAW-EB4]
 gi|167353827|gb|ABZ76440.1| DNA polymerase III, epsilon subunit [Shewanella halifaxensis
           HAW-EB4]
          Length = 242

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 119/240 (49%), Gaps = 16/240 (6%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+I+ D ETTG++          RIIEIG VE+++   T R +  ++ P  +    EA+ 
Sbjct: 9   RQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QPIDEEAIA 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDPLDP 120
           +HGIT+EF+ DKP F  I   F +F +         N          + LQ       D 
Sbjct: 68  VHGITNEFVADKPKFHEIAQSFIEFIDGAEIVAHNANFDVSFMDHEFSMLQPRGPKTADI 127

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +I+D+L+IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+ M  G ++
Sbjct: 128 CQILDSLAIAKHLHPGQKNNLDALCKRYGIDNSARDLHGALLDAEILADVYLLMTGGQTK 187

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWD 238
            N   +          + +        R K      + +EL  H++ +  + K+   +W 
Sbjct: 188 FNLSSEKAGQEGGGIHRLSA------DRSKLKVIAASADELIRHEERLDLVAKSGQCLWR 241


>gi|146310412|ref|YP_001175486.1| DNA polymerase III subunit epsilon [Enterobacter sp. 638]
 gi|145317288|gb|ABP59435.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638]
          Length = 245

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 131/242 (54%), Gaps = 18/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGRNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF ++ N      + HNA FD+GF++ E  ++N++    + 
Sbjct: 69  HGIADEFLLDKPTFADVADEFIEYINGAE--LVIHNASFDIGFMDYEFSKLNRNIPKTNT 126

Query: 123 IIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                     AR+ +P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKVTDSLALARKMYPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLLMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +++  +      + V         +      ++EEL EH+  +  + K     +
Sbjct: 187 SMAFSTESDSQQQANGGIQRVVRQDS----RLRVILASEEELAEHESRLDIVQKKGGSCL 242

Query: 237 WD 238
           W 
Sbjct: 243 WR 244


>gi|91784549|ref|YP_559755.1| DNA polymerase III subunit epsilon [Burkholderia xenovorans LB400]
 gi|91688503|gb|ABE31703.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
          Length = 244

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 76/237 (32%), Positives = 114/237 (48%), Gaps = 10/237 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRI+E+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F  I  +F DF    +              +   L  +         IID
Sbjct: 60  TTEFLSDKPKFGEIADQFRDFIQGADLIIHNAPFDIGFLDVEFALLGLPPVSTYCGEIID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
                         V   SL      +    + +EL  H   +  L K     ++W 
Sbjct: 180 LGESHAGGDARAPRVAIDSLD----LVVITASDDELAAHQALLDGLDKAIKGTSVWR 232


>gi|268592015|ref|ZP_06126236.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131]
 gi|291312407|gb|EFE52860.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131]
          Length = 247

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 87/244 (35%), Positives = 132/244 (54%), Gaps = 18/244 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P+ R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+DEFL+DKP F+ I  EF +F        + HNA FD+GF++ E +++NK       
Sbjct: 66  HGISDEFLQDKPVFAEIADEFLEFIRGAE--LVIHNAPFDIGFMDYEFRKLNKGIPPTQD 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +AR+  P  RN+L++LC RY I  S R+ HGALLD+ +LSDVY+ M  G +
Sbjct: 124 FCTITDSLVLARKLFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----A 235
            ++F   +      +E +                   + EEL  H+  +  + K      
Sbjct: 184 SLSFSMDSESANNEQEYEIQRIERPQT---GLRVIFASDEELIAHEARLDIVDKKGGKPC 240

Query: 236 IWDR 239
           +W +
Sbjct: 241 LWRQ 244


>gi|283783999|ref|YP_003363864.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168]
 gi|282947453|emb|CBG87000.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168]
          Length = 243

 Score =  141 bits (355), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 132/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F ++L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHIYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E  ++N+D      
Sbjct: 66  HGIADEFLLDKPTFADVADEFLDYIRGAE--LVIHNASFDIGFMDYEFSKLNRDIPKTSS 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +    +   EE        + +  K      + EE+  H+  +  + K     +
Sbjct: 184 SMTFAMEGETQQQQGEETIQRL---VRQARKLRVVFASDEEVAAHEARLDLVEKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|226328903|ref|ZP_03804421.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198]
 gi|225202089|gb|EEG84443.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198]
          Length = 250

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 89/242 (36%), Positives = 134/242 (55%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P  R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPE-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+DEFL+D PSF+ I  EF ++        I HNA FD+GF++ E +++N+D      
Sbjct: 66  HGISDEFLEDCPSFADIADEFLEYIRGAE--LIIHNASFDIGFMDYEFRKLNRDIPPTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR   P  RN+L++LC RY I  S R+ HGALLD+ +LSDVY+ M  G +
Sbjct: 124 FCQITDSLAMARALFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +   +   ++         +         R T EEL EH+  +  + K     +
Sbjct: 184 ALAFSMEGESNNEQEQNDIQRIERPVS---GLRVIRATAEELAEHESRLDLVEKKGGHCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|294637713|ref|ZP_06715990.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685]
 gi|291089143|gb|EFE21704.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685]
          Length = 243

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 127/242 (52%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVINRRLTGRNFHVYLKPD-RLVDPEAFMV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLD 119
           HGI+D+FL  +PSF+ +  EF +F        + HNA FD+GF++ E     R       
Sbjct: 66  HGISDDFLLGQPSFADVVDEFLEFIRGAE--LVIHNAPFDIGFMDYEFAKLGRDLPKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            ++F  + +     +  +       +           ++ EL  H++ +  + K     +
Sbjct: 184 SLSFASEGDSATQVQAAEL---RRVVRGAQGLRVVYASEAELAAHEQRLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|91793373|ref|YP_563024.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
 gi|91715375|gb|ABE55301.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
          Length = 242

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 82/242 (33%), Positives = 122/242 (50%), Gaps = 20/242 (8%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+I+ D ETTG++          RIIEIG VE+++   T RT+  ++ P G+   PEA+ 
Sbjct: 9   RQIILDTETTGMNQAGGAIYIGHRIIEIGCVEVINRRLTGRTYHQYINP-GQSIDPEAIA 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGITDE + ++P F  I  EF DF         AHNA FDV F++ E   +        
Sbjct: 68  VHGITDERVANEPRFHQIAQEFIDFIQGAEIV--AHNASFDVSFMDHEFSMLQPRGPKTK 125

Query: 122 RIIDTLS---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            I D L    IA+R HP  +N+L++LCKRYGI  S R+ HGALLD+ +L+DVY+ M  G 
Sbjct: 126 DITDILDSLAIAKRLHPGQKNNLDALCKRYGIDNSRRTYHGALLDAEILADVYLLMTGGQ 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAI 236
            + N   +         ++      +            + +EL  H+  +  + K    +
Sbjct: 186 IKFNLSNEQAGQEAGGIQRLDPSGFN------LKVIAASADELVLHESRLDLVQKSGKCL 239

Query: 237 WD 238
           W 
Sbjct: 240 WR 241


>gi|118161395|gb|ABK64077.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum]
          Length = 238

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 83/236 (35%), Positives = 116/236 (49%), Gaps = 13/236 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +  DRI+EIGAVEL +   T   F  ++ P  R +   AL +HG+
Sbjct: 1   MRQIVLDTETTGLNPRTGDRILEIGAVELNNRMLTGNNFHHYINPE-RDSEEGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I  EF  F                      +   +         +ID
Sbjct: 60  TTEFLSDKPKFAEIAEEFRAFIAGAELIIHNAPFDIGFLNAEFKRLNLPPVHEQVHGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A+  HP  RN L++LC RYG++ +HR  HGALLDS LL+DVY+ M  G + ++   
Sbjct: 120 TLVQAKEMHPGKRNSLDALCDRYGVSNAHRKLHGALLDSELLADVYLAMTRGQNSLSMEE 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237
           +        E       + ++   + +F   T +EL  H+ TI  L K      IW
Sbjct: 180 EV-------EVAADGAVLEIVPLAEVIFQSATADELAAHEATIAGLDKAAKGQCIW 228


>gi|238897890|ref|YP_002923569.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465647|gb|ACQ67421.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 241

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 94/242 (38%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTGL+      +   IIEIGAVE+++   T +TF  ++ PN R+  PEA ++
Sbjct: 3   RQIVLDTETTGLNKTGPHYEGHNIIEIGAVEVINRRLTGKTFHTYVRPN-RQVDPEAYQI 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+DEFL DKP FS IFS+F++F        I HNA FD+GF++ E   + ++      
Sbjct: 62  HGISDEFLSDKPRFSEIFSQFFEFIRGSE--LIIHNAAFDIGFMDYEFSALQQNIPKTNT 119

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              + DTL++ARR  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 120 FCTVTDTLALARRLFPGKRNSLDALCDRYQIDNSKRTLHGALLDAQILAEVYLAMTGGQT 179

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
             +F  +T+E         TV    +    +      + +ELDEH  ++  L K     I
Sbjct: 180 LFSFSDETDETDIR---NMTVRPKRVKTSSQLKIIYASCDELDEHQASLDLLEKKEGSCI 236

Query: 237 WD 238
           W 
Sbjct: 237 WR 238


>gi|329900785|ref|ZP_08272589.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549374|gb|EGF33942.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 235

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/237 (33%), Positives = 122/237 (51%), Gaps = 11/237 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +  DR+IEIG VE+++   T + F  +L P  R +   AL +HG+
Sbjct: 1   MRQIVLDTETTGLNPRSGDRVIEIGCVEMINRRLTGKNFHCYLNPE-RDSEEGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL+DKP F+++ +E  D+ +                    +   I       S +ID
Sbjct: 60  TTEFLRDKPKFAAVAAELRDYISGAEVIIHNAPFDVGFLDAEFKRLDIPLFNTQVSGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A+  HP  RN L+SLC RYG++ +HR+ HGALLD+ LL++VY+ M  G + ++   
Sbjct: 120 TLVQAKEMHPGKRNSLDSLCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLSMEL 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
              +            ++ L+     L    + EEL EH+  +  L K     ++W 
Sbjct: 180 DDGDQAGESG-----AHLELVPLADILVLPASAEELGEHELALTALDKEMRGTSLWR 231


>gi|225677154|ref|ZP_03788153.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590821|gb|EEH12049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 231

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 93/237 (39%), Positives = 140/237 (59%), Gaps = 11/237 (4%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           ++K+R+IV D ETTGLD+    RIIEIG VEL++   T + F  +L P  R     + K+
Sbjct: 2   ESKLREIVLDTETTGLDTGSGHRIIEIGCVELINRIPTGKVFHRYLNPE-RDIPYHSFKI 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI++EFL+DKP FS +  EF DF    N   + HNA+FDV F+N EL ++N   +   R
Sbjct: 61  HGISEEFLEDKPLFSDVALEFLDFI--SNDILVIHNAEFDVKFLNMELSKLNAGLISSDR 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+K   S   LN+LCKR+ I++ +R  HGAL+D+ LL+ VY+++  G     
Sbjct: 119 VLDTLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTFL 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
           F  + N+D      +  V N++      P       EE+DEH K +  +  N +W++
Sbjct: 179 FDNECNQDSNSTFVQHKVRNLT------PREHSPNSEEIDEHKKLLDKIN-NTLWNK 228


>gi|261346344|ref|ZP_05973988.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM
           4541]
 gi|282565658|gb|EFB71193.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM
           4541]
          Length = 253

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/244 (34%), Positives = 131/244 (53%), Gaps = 18/244 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+DEFL+DKP F+ I  EF +F        I HNA FD+GF++ E +++N+       
Sbjct: 66  HGISDEFLQDKPVFAEIADEFIEFIRGAE--LIIHNAPFDIGFMDYEFRKLNRGIPPTAE 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +AR+  P  RN+L++LC RY I  S R+ HGALLD+ +LSDVY+ M  G +
Sbjct: 124 FCSITDSLVLARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----A 235
            + F   ++     +  +                   + +E+ EH+  +  + K      
Sbjct: 184 SLAFSMDSDSKNIQQANEIQRIQRPAS---GLKVLYASDQEIAEHEARLDIVDKKGGKPC 240

Query: 236 IWDR 239
           +W +
Sbjct: 241 LWRK 244


>gi|119503277|ref|ZP_01625361.1| response regulator receiver domain protein (CheY-like) [marine
           gamma proteobacterium HTCC2080]
 gi|119460923|gb|EAW42014.1| response regulator receiver domain protein (CheY-like) [marine
           gamma proteobacterium HTCC2080]
          Length = 239

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 91/241 (37%), Positives = 135/241 (56%), Gaps = 12/241 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++V D ETTGL+  +  RIIEIG VEL++   T R F  ++ P  R     AL +HGIT
Sbjct: 3   RQVVLDTETTGLEVSQGHRIIEIGCVELINRRLTGRHFHQYIQPE-RDIDAGALAVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SRI 123
            EFL DKP+F  I ++F  F +      I HNA FDVGFI+AEL R N+D         I
Sbjct: 62  PEFLADKPTFDRIANDFVTFIDGAE--LIIHNAPFDVGFIDAELARFNRDHPSTSALCSI 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL++AR KHP  RN L++LC+RY +  + R+ HGALLD+ +L+DV++ M  G + +  
Sbjct: 120 VDTLTLARSKHPGQRNSLDALCQRYHVDNASRTLHGALLDAEILADVFLIMTGGQTSLGL 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWDR 239
             + +E+       + +  +S  ++  P     T  EL  H+  +  +    G   +W  
Sbjct: 180 HDEPSEEGGSGLGARGIRRLSSERKPLP-VINATAAELSRHENRLDQIATHSGGAVLWRE 238

Query: 240 Y 240
           +
Sbjct: 239 H 239


>gi|304408611|ref|ZP_07390232.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|307305439|ref|ZP_07585187.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
 gi|304352432|gb|EFM16829.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|306911742|gb|EFN42167.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
          Length = 242

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 122/246 (49%), Gaps = 16/246 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++          RIIEIG VE+++   T R +  ++ P G+  
Sbjct: 3   IISNANRQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINP-GQTI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRIN 114
            PEA+ +HGITDE +  +P F  +  +F +F +         N          + LQ   
Sbjct: 62  DPEAIAVHGITDERVSKEPRFHQVAQDFINFIDGAEIVAHNANFDVSFMDHEFSLLQPRG 121

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               D  +I+DTL IA+  HP  +N+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M
Sbjct: 122 PKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYLIM 181

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233
             G ++ N   +         ++    +++            + +EL+ H++ +  + K 
Sbjct: 182 TGGQTKFNLSNEEAGQEAGGIQRFDPQSLN------LKVIGASADELNMHEQRLDLVAKS 235

Query: 234 -NAIWD 238
              +W 
Sbjct: 236 GKCLWR 241


>gi|295677150|ref|YP_003605674.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
 gi|295436993|gb|ADG16163.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
          Length = 244

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 10/237 (4%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRI+E+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARGGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I  +F DF    +                  L  +         IID
Sbjct: 60  TTEFLSDKPKFAEIIDQFRDFIQGADLIIHNAPFDIGFLDAEFALLGLPPVSTHCGEIID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLAQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                     +   V     L   + +    + +E   H+  +  L K     ++W 
Sbjct: 180 LGEAQAGGDTDAPRVA----LDSLELVVIAASDDESAAHEAVLDDLDKAIKGASVWR 232


>gi|90581658|ref|ZP_01237447.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
 gi|90437142|gb|EAS62344.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
          Length = 241

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 94/247 (38%), Positives = 140/247 (56%), Gaps = 17/247 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R IVFD ETTG++      +  RIIEIGAVE+++   T +TF V++ P+ R   
Sbjct: 1   MKATNQRIIVFDTETTGMNMTGPHYEGHRIIEIGAVEIINRKLTGKTFHVYIKPD-RPID 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114
           PEA+ +HGITDEFL  KPS++ I  EF DF +      +AHNA FD+GF++ E Q +   
Sbjct: 60  PEAIDVHGITDEFLIGKPSYADIHQEFIDFIDGAE--LVAHNASFDIGFMDYEFQLMGSD 117

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            K   D  ++ DTL +A+R  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 118 LKKTEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLM 177

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           M  G + +        D   +   K +    + +R        + +EL  H++ +  +GK
Sbjct: 178 MTGGQTSLKLSGDDEGDSEKEFAIKRL----VSERKGLKVICASADELVSHEERLDLIGK 233

Query: 234 NA--IWD 238
               +W 
Sbjct: 234 KTDVLWR 240


>gi|269140166|ref|YP_003296867.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202]
 gi|267985827|gb|ACY85656.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202]
 gi|304559999|gb|ADM42663.1| DNA polymerase III epsilon subunit [Edwardsiella tarda FL6-60]
          Length = 243

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 86/242 (35%), Positives = 128/242 (52%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPD-RLVDPEAFTV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLD 119
           HGI+D+FL DKPSF+ +  EF  F        + HNA FD+GF++ E     R       
Sbjct: 66  HGISDDFLLDKPSFAEVADEFLAFIRGAE--LVIHNAPFDIGFMDYEFAKLGRDLPKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M     
Sbjct: 124 FCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMTG--G 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
           Q +  F ++ D   + +   +  +    +        ++ EL  H++ +  + K     +
Sbjct: 182 QTSLAFSSDGDGTSQSQASEIRRVVRGAK-GLRVVYASEAELAAHEQRLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|209364170|ref|YP_001425094.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway
           5J108-111]
 gi|212213173|ref|YP_002304109.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212]
 gi|212218153|ref|YP_002304940.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154]
 gi|215918940|ref|NP_819360.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493]
 gi|206583825|gb|AAO89874.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493]
 gi|207082103|gb|ABS77173.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway
           5J108-111]
 gi|212011583|gb|ACJ18964.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212]
 gi|212012415|gb|ACJ19795.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154]
          Length = 236

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 89/240 (37%), Positives = 128/240 (53%), Gaps = 14/240 (5%)

Query: 5   NKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N MR+IV D ETTGL  +   RIIEIGA+E+++   T      ++ P  R    +A+++H
Sbjct: 3   NLMRQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPE-RSIERDAIEIH 61

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDP 120
           GITD FL DKP F  I +E   F        I HNA FDVGF+N EL+   +  K     
Sbjct: 62  GITDSFLIDKPLFKDIATELISFLKGAE--LIIHNAPFDVGFLNHELKLTGQSFKTLTHY 119

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +++DTL+IAR+KHP   N+L++LC+RY +  S+R  HGALLD+ LL+ VY+ M  G + 
Sbjct: 120 CQVLDTLTIARQKHPGQHNNLDALCRRYHVDNSNRDYHGALLDAELLAQVYLLMTGGQTV 179

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWD 238
           +       +  F    +          RD     R    E + H   +Q L +N   +W+
Sbjct: 180 LF-----EQQGFAVASRSVSVRPLGTDRDSLSVIRANAAETEAHRAFLQLLTENGLCLWN 234


>gi|260772249|ref|ZP_05881165.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260611388|gb|EEX36591.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 246

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 89/243 (36%), Positives = 136/243 (55%), Gaps = 18/243 (7%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++       +  RIIEIGAVE++D   T R F V+L P+ R+  P+A++
Sbjct: 11  RIVVLDTETTGMNFEGGPHYEGHRIIEIGAVEIIDRKLTGRHFHVYLKPD-REIQPQAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118
           +HGITD FL DKP +  +  EF DF        +AHNA FDVGF++ E  ++N       
Sbjct: 70  VHGITDAFLVDKPQYKEVHQEFLDFIKGAE--LVAHNASFDVGFMDYEFAKVNPAIGKTE 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              +I DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 QYCKITDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
           + + F    +      E   +       +R      R + +E++ H + +  + K+   +
Sbjct: 188 TSLQF----SASSQSGEPAGSFVQRVQGERKNLKVLRASADEIEAHQQRLDVVEKSGICL 243

Query: 237 WDR 239
           W +
Sbjct: 244 WRQ 246


>gi|71726088|gb|AAZ39211.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum]
          Length = 238

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 80/236 (33%), Positives = 114/236 (48%), Gaps = 13/236 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +  DRI+EIG VEL +   T   F  ++ P  R +   AL +HG+
Sbjct: 1   MRQIVLDTETTGLNPRTGDRILEIGGVELNNRMLTGNNFHQYINPE-RDSEEGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I  EF  F                      +   +         +ID
Sbjct: 60  TTEFLSDKPKFAEIAEEFRAFIAGAELIIHNAPFDIGFLNAEFKRLNLPPVHEQVHGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A+  HP  RN L++LC RYG++ +HR  HGALLDS LL+DVY+ M  G + ++   
Sbjct: 120 TLVQAKEMHPGKRNSLDALCDRYGVSNAHRKLHGALLDSELLADVYLAMTRGQNSLSMEE 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237
           +                + ++   + +F   T +EL  H+ +I  L K      IW
Sbjct: 180 EVEVAADGAA-------LEIVPLAEVIFQSATADELAAHEASIAGLDKAAKGQCIW 228


>gi|323938758|gb|EGB35004.1| DNA polymerase III [Escherichia coli E1520]
          Length = 246

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 129/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIG VE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGGVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +      + +  K      T EEL  H+  +  + K     +
Sbjct: 187 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|315634676|ref|ZP_07889960.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|315476624|gb|EFU67372.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 253

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 82/247 (33%), Positives = 127/247 (51%), Gaps = 13/247 (5%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           I+ N  R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ PN R   
Sbjct: 3   IQINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPN-RPVD 61

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA+K+HGITDE L DKP FS I +EF ++                          +   
Sbjct: 62  PEAIKVHGITDEMLADKPDFSQIANEFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIK 121

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             D  ++ DTL++AR+ +P  +N+L++LC R GI  S R+ HGALLD+ +L+DVY+ M  
Sbjct: 122 TNDICQVTDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLAMTG 181

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--- 233
           G + +   F  NE    ++  +     ++           T+EEL  H + ++ + K   
Sbjct: 182 GQTSL---FDENESEIIQQVNEQQIQSAVAFSHNLRLLTPTEEELQAHLEYLKLINKKSK 238

Query: 234 -NAIWDR 239
            N +W R
Sbjct: 239 DNCLWTR 245


>gi|170695448|ref|ZP_02886593.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
 gi|170139639|gb|EDT07822.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
          Length = 247

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 115/237 (48%), Gaps = 10/237 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRI+E+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I  +  DF    +                  L  +         IID
Sbjct: 60  TTEFLSDKPKFADIADQIRDFIQGADLIIHNAPFDIGFLDAEFALLGLPPVSTYCGEIID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
                   +     V   SL      +    + +EL  H + +  L K     ++W 
Sbjct: 180 LGESHAGGEAHAPRVAIESLD----LVVIAASDDELAAHQEVLDGLDKAIRGTSVWR 232


>gi|302187967|ref|ZP_07264640.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           syringae 642]
 gi|330952814|gb|EGH53074.1| DNA polymerase III subunit epsilon [Pseudomonas syringae Cit 7]
 gi|330972572|gb|EGH72638.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 259

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 82/246 (33%), Positives = 122/246 (49%), Gaps = 11/246 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +EFL  KP F+ +  EF++F           A +  F          +   D      I+
Sbjct: 68  NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSIL 127

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187

Query: 185 FKTNE---DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237
              ++          + +        R      R ++ EL EH+  + T+ K      +W
Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKACGAPPLW 247

Query: 238 DRYISS 243
            + + +
Sbjct: 248 VQMLEA 253


>gi|254448791|ref|ZP_05062248.1| DNA polymerase III, epsilon subunit [gamma proteobacterium
           HTCC5015]
 gi|198261632|gb|EDY85920.1| DNA polymerase III, epsilon subunit [gamma proteobacterium
           HTCC5015]
          Length = 239

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 98/242 (40%), Positives = 135/242 (55%), Gaps = 15/242 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTGLD K   RIIEIG VEL +   T     ++L P+ R+    A+++H I
Sbjct: 1   MRQVVLDTETTGLDPKQGHRIIEIGCVELENRRLTGNKLHMYLQPD-REIDDGAIEVHQI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           T+EFL DKP F  +  EF DF        + HNA FDVGFI++EL    R      D   
Sbjct: 60  TNEFLADKPRFGDVVDEFLDFVKGSE--LVIHNAAFDVGFIDSELNLLDRNLGQTKDYCG 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL++AR+ HP  RNDL+SLCKRY I  SHR+ HGALLD+ +L+DVY+ M     Q++
Sbjct: 118 VLDTLAMARKMHPGKRNDLDSLCKRYDINNSHRTLHGALLDAEILADVYLMMTG--GQVS 175

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-----AIW 237
            GF   + +    E+     IS   R        + EE + H+K +  L         +W
Sbjct: 176 LGFDAKQKQEADAEQGGAHRISQ-DRAPLQVITASPEEQERHEKLLANLRGKDGDQPCLW 234

Query: 238 DR 239
           D+
Sbjct: 235 DQ 236


>gi|66045009|ref|YP_234850.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255716|gb|AAY36812.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Pseudomonas syringae pv. syringae B728a]
          Length = 259

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 82/246 (33%), Positives = 122/246 (49%), Gaps = 11/246 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +EFL  KP F+ +  EF++F           A +  F          +   D      I+
Sbjct: 68  NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSIL 127

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187

Query: 185 FKTNE---DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237
              ++          + +        R      R ++ EL EH+  + T+ K      +W
Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKACGAPPLW 247

Query: 238 DRYISS 243
            + + +
Sbjct: 248 VQMLEA 253


>gi|304413386|ref|ZP_07394859.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola
           LSR1]
 gi|304284229|gb|EFL92622.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola
           LSR1]
          Length = 242

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 85/240 (35%), Positives = 130/240 (54%), Gaps = 16/240 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTGL+      +  R+IEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGLNKVGAHYQGHRVIEIGAVEMVNRRLTGNHFHVYLKPD-RLVDPEAYAI 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLD 119
           HGI+DEFL DKP+F+     F DF    +   I HNA FD+GF++ E +   + +     
Sbjct: 66  HGISDEFLADKPTFADTAKTFLDFIRGAD--LIIHNASFDIGFLDYEFRLLEQNSAKIET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +AR+  P  RN+LN+LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCTITDSLLLARQLFPGKRNNLNALCDRYHIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIW 237
            ++F  +T++    ++  K      +             +EL  H   ++ + K    +W
Sbjct: 184 SLSFSMETDQQ---QQNNKEEIKPIVRPTSALKIIYANADELATHQALLEGMVKKGKCLW 240


>gi|114563375|ref|YP_750888.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
 gi|114334668|gb|ABI72050.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
          Length = 242

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 120/240 (50%), Gaps = 16/240 (6%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+++ D ETTG++          RIIEIG VE+++   T RT+  ++ P G+    EA++
Sbjct: 9   RQVILDTETTGMNQAGGPIYVGHRIIEIGCVEVINRRLTGRTYHQYINP-GQAIDEEAIQ 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDPLDP 120
           +HGIT++ + ++P F  I  +F DF +         N          ++L  I     D 
Sbjct: 68  VHGITNDRVANEPRFHQIAKDFIDFIDGAEIVAHNANFDVSFMDHEFSKLNPIGPKTKDI 127

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             I+D+L+IA+R HP  +N+L++LC+RYGI    R+ HGALLD+ +L+DVY+ M     Q
Sbjct: 128 CSILDSLAIAKRLHPGQKNNLDALCRRYGIDNGRRTYHGALLDAEILADVYLIMTG--GQ 185

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWD 238
           I F     +        K +   +            + +E+  H++ +  + K    +W 
Sbjct: 186 IKFNLSNEKAGQEGGGIKNIDPSAF----NLKVVGASADEILLHEQRLDLIAKSGKCLWR 241


>gi|37524935|ref|NP_928279.1| DNA polymerase III subunit epsilon [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784361|emb|CAE13238.1| DNA polymerase III epsilon chain [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 248

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 89/248 (35%), Positives = 130/248 (52%), Gaps = 17/248 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R++V D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA ++
Sbjct: 7   RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIQPD-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI+DEFL+DKP F+ I  EF +F        I HNA FD+GFI+ E     R      D
Sbjct: 66  HGISDEFLQDKPLFADIADEFIEFIRGAE--LIIHNAPFDIGFIDYEFGKLNRDIPPTAD 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR   P  RN+L++LC RY I  S R+ HGALLD+ +LSDVY+ M     
Sbjct: 124 FCKITDSLQLARGLFPGKRNNLDALCDRYDIDNSKRTLHGALLDAEILSDVYLIMTG--G 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
           Q +  F    +         +  I+  +         T EEL  H+  +  + K     +
Sbjct: 182 QTSLAFSMEGEIASGANVSEIQRITRPQ-MALKVIYATDEELAAHESRLDLVEKKGGSCL 240

Query: 237 WDRYISSN 244
           W   +  +
Sbjct: 241 WRMNLGQS 248


>gi|187479401|ref|YP_787426.1| DNA polymerase III subunit epsilon [Bordetella avium 197N]
 gi|115423988|emb|CAJ50541.1| DNA polymerase III, epsilon chain [Bordetella avium 197N]
          Length = 243

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 128/239 (53%), Gaps = 16/239 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTGLD  +  RI+EIG VEL++   T R   ++L P+ R + PEAL +HG+
Sbjct: 1   MRQIIFDTETTGLDPAQGHRIVEIGCVELVNRMVTGRNLHLYLNPD-RDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--I 123
           T  FL DKP F  I   F  F        IAHNA FDV F NAELQ++ +  LD     +
Sbjct: 60  TTAFLSDKPRFGDIAEAFIQFIEGAE--LIAHNASFDVKFFNAELQKVGRKTLDNYCASV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L+ AR   P  RN L++LC RYGI+ +HR+ HGALLDS LL++V++ M  G   +  
Sbjct: 118 TDSLAHARTLFPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
               N+             ++              E+L EH+  +  L K    + +W 
Sbjct: 178 DVDDNQAGG------NRIALAAFDASVLPVVAAAGEDLTEHEAYLAALDKAVGGSCLWR 230


>gi|126174224|ref|YP_001050373.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155]
 gi|125997429|gb|ABN61504.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155]
          Length = 242

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 121/246 (49%), Gaps = 16/246 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++          RIIEIG VE+++   T R +  ++ P G+  
Sbjct: 3   IISNANRQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRIN 114
            PEA+ +HGITDE +  +P F  +  +F +F +         N          + LQ   
Sbjct: 62  DPEAIAVHGITDERVSKEPRFHQVAQDFINFIDGAEIVAHNANFDVSFMDHEFSLLQPRG 121

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               D  +I+DTL IA+  HP  +N+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M
Sbjct: 122 PKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYLIM 181

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233
             G ++ N   +         ++    +++            + +EL  H++ +  + K 
Sbjct: 182 TGGQTKFNLSNEEAGQEAGGIQRFDPQSLN------LKVIGASADELTMHEQRLDLVAKS 235

Query: 234 -NAIWD 238
              +W 
Sbjct: 236 GKCLWR 241


>gi|331019245|gb|EGH99301.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 259

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/246 (33%), Positives = 125/246 (50%), Gaps = 11/246 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+      RI+EIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +EFL  KP F+ +  EF++F           A +  F          +   D     +I+
Sbjct: 68  NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCKIL 127

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187

Query: 185 FKTNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
              ++     E    + +        R      R ++ EL EH+  + T+ K     A+W
Sbjct: 188 GNASDGNGSAEGSGNRGSEIRRLPADRKPCRVIRASESELAEHEVRMTTIAKATGAPALW 247

Query: 238 DRYISS 243
            + + +
Sbjct: 248 VQMLEA 253


>gi|28870866|ref|NP_793485.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28854115|gb|AAO57180.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 257

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/246 (33%), Positives = 125/246 (50%), Gaps = 11/246 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+      RI+EIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 7   RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 65

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +EFL  KP F+ +  EF++F           A +  F          +   D     +I+
Sbjct: 66  NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCKIL 125

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 126 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 185

Query: 185 FKTNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
              ++     E    + +        R      R ++ EL EH+  + T+ K     A+W
Sbjct: 186 GNASDGNGSAEGSGNRGSEIRRLPADRKPCRVIRASESELAEHEVRMTTIAKATGAPALW 245

Query: 238 DRYISS 243
            + + +
Sbjct: 246 VQMLEA 251


>gi|237803575|ref|ZP_04591160.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331025557|gb|EGI05613.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 257

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/246 (33%), Positives = 124/246 (50%), Gaps = 11/246 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +EFL  KP F+ +  EF++F           A +  F          +   D      I+
Sbjct: 68  NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGDQDRSDITRHCSIL 127

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187

Query: 185 FKTNE---DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237
              ++          + +        R      R ++ EL EH+  + T+ K    +A+W
Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPANRKPCRVIRASESELAEHEVRMSTIAKASGASALW 247

Query: 238 DRYISS 243
            + + +
Sbjct: 248 VQMLEA 253


>gi|212709216|ref|ZP_03317344.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM
           30120]
 gi|212688128|gb|EEB47656.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM
           30120]
          Length = 253

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 85/244 (34%), Positives = 132/244 (54%), Gaps = 18/244 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P+ R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+DEFL+DKP F+ I  EF +F        + HNA FD+GF++ E +++N+       
Sbjct: 66  HGISDEFLQDKPVFADIADEFIEFIRGAE--LVIHNAPFDIGFMDYEFRKLNRGIPPTAE 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +AR+  P  RN+L++LC RY I  S R+ HGALLD+ +LSDVY+ M  G +
Sbjct: 124 FCTITDSLVLARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----A 235
            + F  ++      +          +           + EE+ EH+  +  + K      
Sbjct: 184 SLAFSMESESSNTEQANAIQRIERPVS---GLKVLYASDEEVAEHEARLDIVDKKGGKPC 240

Query: 236 IWDR 239
           +W +
Sbjct: 241 LWRQ 244


>gi|307132179|ref|YP_003884195.1| DNA polymerase III subunit epsilon [Dickeya dadantii 3937]
 gi|306529708|gb|ADM99638.1| DNA polymerase III epsilon subunit [Dickeya dadantii 3937]
          Length = 244

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 125/242 (51%), Gaps = 16/242 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYLRPD-RLVDPEAYNV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI+DEFL DKP++  +  +F DF        + HNA FD+GF++ E    +R       
Sbjct: 66  HGISDEFLADKPTYGDVVDDFLDFIRGAE--LVIHNATFDIGFMDYEFRLLKRDIPKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M     
Sbjct: 124 FCTITDSLQMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTG--G 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
           Q +  F    D   +  +                   + EEL  H++ +  + K     +
Sbjct: 182 QTSLAFSMEGDTQQQTAQTETIQRIARPASALAVLYASDEELAAHEQRLDLIMKKGGSCL 241

Query: 237 WD 238
           W 
Sbjct: 242 WR 243


>gi|88800079|ref|ZP_01115649.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297]
 gi|88777205|gb|EAR08410.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297]
          Length = 238

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/237 (35%), Positives = 129/237 (54%), Gaps = 14/237 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTGL+  K DRI+E+G VE++D   T R F  ++ P  R    E + +HGI
Sbjct: 1   MRQVVLDTETTGLNPTKGDRIVEVGCVEMVDRKLTGRHFHYYINPE-RDIPDEVVAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----- 120
            ++ +KD P F  I  E W +        + HNA FD+GF+NAE +R  ++  +P     
Sbjct: 60  DNDKVKDSPKFRDIAVELWTWLEGAE--LVIHNAAFDMGFLNAEFERFAQEQREPFEKLE 117

Query: 121 --SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               ++DTL +AR KHP S+  L++LCKRYGI  SHR+ HGALLDS +L+DVY+ +  G 
Sbjct: 118 TVCGVLDTLKVARDKHPGSKVSLDALCKRYGIDNSHRTLHGALLDSEILADVYLMLTGGQ 177

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           + +     +      +    +  + S       +  + +  EL  H+  I  L + +
Sbjct: 178 TALILDDSSESGSSDQAVDVSALDDSGG---HLITVQPSSAELAAHEAFIDMLAEKS 231


>gi|332286832|ref|YP_004418743.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7]
 gi|330430785|gb|AEC22119.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7]
          Length = 236

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 109/237 (45%), Gaps = 11/237 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  +  R++E+  VE+ + S T R   ++L P GR + PEAL +HG+
Sbjct: 1   MRQIVLDTETTGLDPAQGHRVVELACVEMENRSLTGRHLHLYLNP-GRDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL   P F  +  +  D+  +                       +        +I D
Sbjct: 60  TTEFLSGHPRFEEVAQQLVDYVKDAEVIIHNAAFDVKFLNAELTRAGLPVFNSLCGKITD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L  AR  HP  RN L++LC+RYGI+ +HR+ HGALLDS LL+DV++ M  G   +   F
Sbjct: 120 SLLHARELHPGKRNSLDALCERYGISNAHRTLHGALLDSELLADVWLAMTRGQDALLMDF 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
           + +              +              + EL  H+  +  L K      +W 
Sbjct: 180 EDDGSTGA-----NGMRLEQFDASTLKVVLAGEAELQAHNDYLAGLDKTAGTPCVWR 231


>gi|330939732|gb|EGH43019.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 259

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 79/246 (32%), Positives = 122/246 (49%), Gaps = 11/246 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+      RI+EIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RAVVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +EFL  KP F+ +  EF++F           A +  F          +   D      ++
Sbjct: 68  NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSVL 127

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187

Query: 185 FKTNE---DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237
              ++          + +        R      R ++ EL EH+  + T+ K      +W
Sbjct: 188 GNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKACGAPPLW 247

Query: 238 DRYISS 243
            + + +
Sbjct: 248 VQMLEA 253


>gi|197284137|ref|YP_002150009.1| DNA polymerase III subunit epsilon [Proteus mirabilis HI4320]
 gi|194681624|emb|CAR40653.1| DNA polymerase III, epsilon subunit [Proteus mirabilis HI4320]
          Length = 252

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 132/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P  R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPE-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119
           HGI+DEFL+D PSF+ I  EF  +        I HNA FD+GF++ E Q++N+D      
Sbjct: 66  HGISDEFLEDCPSFAEIADEFLAYIRGAE--LIIHNASFDIGFMDYEFQKLNRDIPLTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR   P  RN+L++LC RY I  S R+ HGALLD+ +L+DVY+ M     
Sbjct: 124 FCQITDSLAMARELFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILADVYLAMTG--G 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
           Q    F    +   +++   +  I    R      + + EEL  H+  +  + K     +
Sbjct: 182 QTALAFSMEGESNEEQKGDDIQRIVRPVR-GLRVIKASAEELVAHEARLDLVVKKGGHCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|330963305|gb|EGH63565.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 259

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/246 (33%), Positives = 125/246 (50%), Gaps = 11/246 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+      RI+EIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +EFL  KP F+ +  EF++F           A +  F          +   D     +I+
Sbjct: 68  NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCKIL 127

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187

Query: 185 FKTNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
              ++     E    + +        R      R ++ EL EH+  + T+ K     A+W
Sbjct: 188 GNASDGNGSAEGSSNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTIAKATGAPALW 247

Query: 238 DRYISS 243
            + + +
Sbjct: 248 VQMLEA 253


>gi|213968849|ref|ZP_03396990.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           tomato T1]
 gi|301384105|ref|ZP_07232523.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059179|ref|ZP_07250720.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           K40]
 gi|302135017|ref|ZP_07261007.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926452|gb|EEB60006.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           tomato T1]
          Length = 259

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/246 (33%), Positives = 125/246 (50%), Gaps = 11/246 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+      RI+EIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +EFL  KP F+ +  EF++F           A +  F          +   D     +I+
Sbjct: 68  NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCKIL 127

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187

Query: 185 FKTNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
              ++     E    + +        R      R ++ EL EH+  + T+ K     A+W
Sbjct: 188 GNASDGNGSAEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTIAKATGAPALW 247

Query: 238 DRYISS 243
            + + +
Sbjct: 248 VQMLEA 253


>gi|212635110|ref|YP_002311635.1| DNA polymerase III subunit epsilon [Shewanella piezotolerans WP3]
 gi|212556594|gb|ACJ29048.1| DNA polymerase III, epsilon subunit [Shewanella piezotolerans WP3]
          Length = 242

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 78/246 (31%), Positives = 123/246 (50%), Gaps = 16/246 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  +  R+I+ D ETTG++          RIIEIG VE+++   T R +  ++ P  +  
Sbjct: 3   IISSAKRQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVVNRKLTGRHYHEYINP-LQPI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRIN 114
             EA+++HGIT+EF+ DKP F  I   F +F +         N          + LQ I 
Sbjct: 62  DEEAIEVHGITNEFVADKPKFHQIAQSFIEFIDGAEIVAHNANFDVSFMDHEFSMLQPIG 121

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +  +I+D+L+IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+ M
Sbjct: 122 PKTAEICQILDSLAIAKYLHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILADVYLIM 181

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
             G ++ N             ++    N     R K      + +EL  H++ +  + K+
Sbjct: 182 TGGQTKFNL------SSEKAGQEGGGINRLPKDRAKLKVISASADELTRHEERLDLVAKS 235

Query: 235 --AIWD 238
              IW 
Sbjct: 236 GQCIWR 241


>gi|27479696|gb|AAO17223.1| DnaQ [Photorhabdus luminescens]
          Length = 248

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 90/249 (36%), Positives = 132/249 (53%), Gaps = 19/249 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R++V D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA ++
Sbjct: 7   RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYIQPD-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI+DEFL+DKP F+ +  EF +F        I HNA FD+GFI+ E     R      D
Sbjct: 66  HGISDEFLQDKPLFADVADEFVEFIRGAE--LIIHNAPFDIGFIDYEFGKLDRDIPPTAD 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR   P  RN+L++LC RY I  S R+ HGALLD+ +L+DVY+ M     
Sbjct: 124 FCKITDSLQLARGLFPGKRNNLDALCDRYDIDNSKRTLHGALLDAEILADVYLIMTG--G 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
           Q +  F    +         +  ++  +         T EEL  H+  +  + K     +
Sbjct: 182 QTSLAFSMEGEIAGGANVSEIQRVTRSQT-ALKVVYATDEELAAHESRLDLVEKKGGSCL 240

Query: 237 WDRYISSNQ 245
           W   ISS Q
Sbjct: 241 WR--ISSEQ 247


>gi|153825368|ref|ZP_01978035.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2]
 gi|183179467|ref|ZP_02957678.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3]
 gi|229524236|ref|ZP_04413641.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|229528763|ref|ZP_04418153.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|254225776|ref|ZP_04919381.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51]
 gi|254286458|ref|ZP_04961415.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226]
 gi|262192140|ref|ZP_06050301.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|297580875|ref|ZP_06942800.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|125621682|gb|EAZ50011.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51]
 gi|149741052|gb|EDM55121.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2]
 gi|150423407|gb|EDN15351.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226]
 gi|183012878|gb|EDT88178.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3]
 gi|229332537|gb|EEN98023.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229337817|gb|EEO02834.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|262031989|gb|EEY50566.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|297534701|gb|EFH73537.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|327484751|gb|AEA79158.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4]
          Length = 247

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 91/242 (37%), Positives = 131/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R    EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118
           +HGITDEFLKDKP +  +  EF DF        +AHNA FDVGF++ E  +         
Sbjct: 70  VHGITDEFLKDKPEYKDVHEEFLDFIKGAE--LVAHNAPFDVGFMDYEFAKLGGAIGKTS 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
           + + F   T        E          +R        + +EL  H   +  + K+   +
Sbjct: 188 TSLQFSSATQNSGELSAESLKRAR---SERKALKVLAASADELQAHQDRLDIVAKSGTCL 244

Query: 237 WD 238
           W 
Sbjct: 245 WR 246


>gi|307730502|ref|YP_003907726.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003]
 gi|307585037|gb|ADN58435.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003]
          Length = 244

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/237 (32%), Positives = 116/237 (48%), Gaps = 10/237 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRI+E+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I  +F DF    +                  L  +         IID
Sbjct: 60  TTEFLSDKPKFAEIADQFRDFIQGADLIIHNAPFDIGFLDAEFALLGLPPVSTYCGEIID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
                   +     V   SL    + +    + EE+  H   +  L K     ++W 
Sbjct: 180 LGESHAGGEAHAPRVAIESL----ELVVIAASDEEVAAHQAVLDGLDKAIKGTSVWR 232


>gi|300024773|ref|YP_003757384.1| DNA polymerase III subunit epsilon [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526594|gb|ADJ25063.1| DNA polymerase III, epsilon subunit [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 237

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 97/235 (41%), Positives = 146/235 (62%), Gaps = 5/235 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD K  DR+IEIG +E+++   T   F  F+ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGLDPKTGDRLIEIGGIEIINRIPTGVEFHRFINPE-RNVPMEAQNVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL  KP F  ++ +F  F  +     + HNA+FDV F+N EL  + + PL   R++D
Sbjct: 60  STEFLIGKPLFREVYRDFLAFIGDD--ILVIHNAQFDVNFLNHELGLVGEKPLSFDRVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++ARR+HP+  N L++LCKRYGI  S R+KHGA++DS LL++VY++++    Q  FG 
Sbjct: 118 TLALARRRHPAGPNSLDALCKRYGIDTSQRTKHGAIVDSLLLAEVYVELLGE-RQATFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           +T        E++     +  +R +PL +R+T+ +L  H   I+ +G  AIW+R+
Sbjct: 177 QTIGSGAATSERRNGKRAAAKQRPEPLPSRLTEADLVAHRSFIEKMGAKAIWNRF 231


>gi|127513039|ref|YP_001094236.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
 gi|126638334|gb|ABO23977.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
          Length = 242

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/246 (30%), Positives = 118/246 (47%), Gaps = 16/246 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++          RIIEIG VE+++   T R F  ++ P  +  
Sbjct: 3   IISNAKRQVILDTETTGMNQGAGAVYFGHRIIEIGCVEVINRKLTGRHFHEYINP-MQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRIN 114
             EA+ +HGIT+EF+ DKP F+ I   F +F +         N          + L    
Sbjct: 62  DEEAITVHGITNEFVADKPVFAQIAPAFLEFIDGAEIVAHNANFDVSFMDHEFSLLTPRG 121

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               D  +++D+L IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+ M
Sbjct: 122 PKTTDICQVLDSLEIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLIM 181

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                Q  F     +          + N     R        + +EL+ H++ +  + K+
Sbjct: 182 TG--GQTKFELSNEKPGQESGGIIRLAN----NRPSLKVIGASADELNMHEQRLDLVEKS 235

Query: 235 --AIWD 238
              IW 
Sbjct: 236 GQCIWR 241


>gi|295691552|ref|YP_003595245.1| DNA polymerase III subunit epsilon [Caulobacter segnis ATCC 21756]
 gi|295433455|gb|ADG12627.1| DNA polymerase III, epsilon subunit [Caulobacter segnis ATCC 21756]
          Length = 237

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/235 (35%), Positives = 132/235 (56%), Gaps = 9/235 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTG D K  DR++EIG +E++D+  T R+F  +  P  R    EA K+HG++
Sbjct: 3   REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEYCDP-LRDMPAEAEKVHGLS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             FL  KP F  I   F +F  +  +  +AHNA FD  F+N EL++  + P+   R +DT
Sbjct: 62  SAFLTGKPKFHEIADRFVEFVGD--SVVVAHNAAFDRQFVNFELEKCGRAPIREDRWVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LCKR+ I++  R KHGAL+D+HLL++VY++ + GG +      
Sbjct: 120 LAMAKKRFPGMYNSLDALCKRFKISLESRDKHGALIDAHLLAEVYLE-LQGGKERALELT 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWDRY 240
              +             S   R +PL  R T  E + H   + + L   A+W ++
Sbjct: 179 HVVETLAVSAAIQG---SYGSRPRPLAPRSTDAEREVHAAWVRKNLKDQALWIKF 230


>gi|227357997|ref|ZP_03842339.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906]
 gi|227161732|gb|EEI46764.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906]
          Length = 252

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 132/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P  R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPE-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119
           HGI+DEFL+D PSF+ I  EF  +        I HNA FD+GF++ E Q++N+D      
Sbjct: 66  HGISDEFLEDCPSFAEIADEFLAYIRGAE--LIIHNASFDIGFMDYEFQKLNRDIPLTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR   P  RN+L++LC RY I  S R+ HGALLD+ +L+DVY+ M     
Sbjct: 124 FCQITDSLAMARELFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILADVYLAMTG--G 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
           Q    F    +   +++   +  I    R      + + EEL  H+  +  + K     +
Sbjct: 182 QTALAFSMEGEPNEEQKGDDIQRIVRPVR-GLRVIKASAEELVAHEARLDLVVKKGGHCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|330882898|gb|EGH17047.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 259

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 82/246 (33%), Positives = 123/246 (50%), Gaps = 11/246 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +EFL  KP F+ +  EF++F           A +  F          +   D      I+
Sbjct: 68  NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSIL 127

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187

Query: 185 FKTNE---DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
              ++          + +        R      R ++ EL EH+  + T+ K     A+W
Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGAPALW 247

Query: 238 DRYISS 243
            + + +
Sbjct: 248 VQMLEA 253


>gi|320325171|gb|EFW81239.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 259

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 82/246 (33%), Positives = 123/246 (50%), Gaps = 11/246 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +EFL  KP F+ +  EF++F           A +  F          +   D      I+
Sbjct: 68  NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSIL 127

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187

Query: 185 FKTNE---DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
              ++          + +        R      R ++ EL EH+  + T+ K     A+W
Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGAPALW 247

Query: 238 DRYISS 243
            + + +
Sbjct: 248 VQMLEA 253


>gi|283834499|ref|ZP_06354240.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC
           29220]
 gi|291070049|gb|EFE08158.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC
           29220]
          Length = 245

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 82/242 (33%), Positives = 127/242 (52%), Gaps = 18/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R++V D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQVVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E  ++ +D    + 
Sbjct: 69  HGIADEFLLDKPTFAEVADEFLDYIRGAE--LVIHNASFDIGFMDYEFAKLKRDIPKTNE 126

Query: 123 IIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                     AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  + +     +++  T     + +  K      T EEL  H+  +  + K     +
Sbjct: 187 TMAFSMEGD----SQQQNDTGIQRIVRQSSKLRVVFATDEELAAHESRLDLVQKKGGSCL 242

Query: 237 WD 238
           W 
Sbjct: 243 WR 244


>gi|323157950|gb|EFZ44052.1| DNA polymerase III, epsilon subunit [Escherichia coli EPECa14]
          Length = 246

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 84/236 (35%), Positives = 129/236 (54%), Gaps = 14/236 (5%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            + F     E    +++ +      + +  K      T EEL  H+  +  + K A
Sbjct: 184 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVEKKA 236


>gi|153000540|ref|YP_001366221.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185]
 gi|160875177|ref|YP_001554493.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195]
 gi|217973494|ref|YP_002358245.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223]
 gi|151365158|gb|ABS08158.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185]
 gi|160860699|gb|ABX49233.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195]
 gi|217498629|gb|ACK46822.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223]
 gi|315267371|gb|ADT94224.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678]
          Length = 242

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 121/246 (49%), Gaps = 16/246 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++          RIIEIG VE+++   T R +  ++ P G+  
Sbjct: 3   IISNASRQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRIN 114
            PEA+ +HGITDE +  +P F  +  +F +F +         N          + LQ   
Sbjct: 62  DPEAIAVHGITDERVSKEPRFHQVAQDFINFIDGAEIVAHNANFDVSFMDHEFSLLQPRG 121

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               D  +I+DTL IA+  HP  +N+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M
Sbjct: 122 PKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYLIM 181

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233
             G ++ N   +         ++    +++            + +EL  H++ +  + K 
Sbjct: 182 TGGQTKFNLSNEEAGQEAGGIQRFDPQSLN------LKVIGASADELTMHEQRLDLVAKS 235

Query: 234 -NAIWD 238
              +W 
Sbjct: 236 GKCLWR 241


>gi|57239226|ref|YP_180362.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161305|emb|CAH58228.1| DNA polymerase III, epsilon subunit [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 242

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 93/241 (38%), Positives = 140/241 (58%), Gaps = 9/241 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   N +R+IV D ETTGLD+   DRIIE+G +EL+D   T + F  ++ P  R     A
Sbjct: 1   MSYYNGIREIVLDTETTGLDADGGDRIIEMGCIELIDRVFTGKVFHEYINPE-RDIPYYA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGIT + LKDKP FS I  +F DF    N+  + HNA FD+ FI  EL +I K    
Sbjct: 60  TKIHGITVDMLKDKPKFSEIADKFLDFI--GNSVLVIHNAVFDIKFIKMELDKIQKSYNS 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +++DTL +AR+K P   + L++LCKR+ I++  R  HGALLD+ LL  VY+++M  G 
Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCKRFNISLQDRKFHGALLDATLLGKVYVQLMG-GL 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
           Q +  F+ N   F   +     + S ++   P   ++++EE+ +H   ++ + KN IW+ 
Sbjct: 177 QRSLNFQDNSSMFQSSDYSHDVSRSYIE---PRLYKVSEEEIVKHKMLLEKI-KNPIWNN 232

Query: 240 Y 240
            
Sbjct: 233 I 233


>gi|157375130|ref|YP_001473730.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157317504|gb|ABV36602.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 242

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 82/242 (33%), Positives = 128/242 (52%), Gaps = 20/242 (8%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+++ D ETTG++          RIIEIG VE+++   T R +  ++ P  +    EA++
Sbjct: 9   RQVILDTETTGMNQGAGAIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QIIDEEAIE 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118
           +HGIT+E++ +KP F+ I   F DF +       AHNA FDV F++ E   +        
Sbjct: 68  VHGITNEYVANKPKFAEISQSFIDFIDGAEVV--AHNASFDVNFMDHEFSLLQPRGPKTA 125

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  +I+DTL IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+ M  G 
Sbjct: 126 DICQILDTLDIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLMMTGGQ 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
           ++ N       +      +          R      R T +EL +H++ +  + K+   I
Sbjct: 186 TKFNLSGDKAGEGEGGIIRLNSN------RANLKVIRATADELTKHEERLDLVAKSGQCI 239

Query: 237 WD 238
           W 
Sbjct: 240 WR 241


>gi|237730199|ref|ZP_04560680.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2]
 gi|226905738|gb|EEH91656.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2]
          Length = 245

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 127/242 (52%), Gaps = 18/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E  ++ +D    + 
Sbjct: 69  HGIADEFLLDKPTFADVADEFLDYIRGAE--LVIHNASFDIGFMDYEFAKLKRDIPKTNE 126

Query: 123 IIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                     AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  + +     +++  T     + +  K      T EEL  H+  +  + K     +
Sbjct: 187 TMAFSMEGD----SQQQNDTGIQRIVRQSSKLRVVFATDEELAAHESRLDLVQKKGGSCL 242

Query: 237 WD 238
           W 
Sbjct: 243 WR 244


>gi|300312711|ref|YP_003776803.1| DNA polymerase III subunit epsilon [Herbaspirillum seropedicae
           SmR1]
 gi|300075496|gb|ADJ64895.1| DNA polymerase III, epsilon subunit, protein [Herbaspirillum
           seropedicae SmR1]
          Length = 244

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 76/237 (32%), Positives = 118/237 (49%), Gaps = 11/237 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL  +  +RI+EIG VE+L+   + +    ++ P  R +   AL +HG+
Sbjct: 1   MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPE-RDSEEGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP+F  I +EF D+                       L  +         ++D
Sbjct: 60  TTEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L +A+  HP  RN L++LC RYGI+ +HR  HGALLD+ LL++VY+ M  G + +    
Sbjct: 120 SLQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDL 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
              ED    E K     + L    + +    ++EEL  H+  +  L K    + +W 
Sbjct: 180 GAEEDVSEGEGK-----LELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWR 231


>gi|262404569|ref|ZP_06081124.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
 gi|262349601|gb|EEY98739.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
          Length = 247

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 90/242 (37%), Positives = 135/242 (55%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R+   EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118
           +HGITDEFL+DKP +  +  EF DF        +AHNA FDVGF++ E  ++    +   
Sbjct: 70  VHGITDEFLRDKPEYKQVHEEFLDFIKGAE--LVAHNAPFDVGFMDYEFAKLGGSVIKTT 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
           + + F   T        E          +R        + +EL  H + +  + K+   +
Sbjct: 188 TSLQFSASTQNSGELNAESLKRAR---SERKALKVLHASADELQAHQERLDLVAKSGTCL 244

Query: 237 WD 238
           W 
Sbjct: 245 WR 246


>gi|251792047|ref|YP_003006767.1| DNA polymerase III subunit epsilon [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533434|gb|ACS96680.1| DNA polymerase III, epsilon subunit [Aggregatibacter aphrophilus
           NJ8700]
          Length = 254

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 79/248 (31%), Positives = 125/248 (50%), Gaps = 12/248 (4%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           I+ ++ R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R   
Sbjct: 3   IQTHQNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVD 61

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA+K+HGITDE L DKP FS I +EF ++                          +   
Sbjct: 62  PEAIKVHGITDEMLADKPDFSQIANEFIEYIKGAELLIHNAPFDVGFMDYEFRKLNLPIK 121

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             D   + DTL +AR+ +P  +N+L++LC R  I  S R+ HGALLD+ +L+DVY+ M  
Sbjct: 122 TNDICTVTDTLVMARQMYPGKKNNLDALCSRLDIDNSKRTLHGALLDAEILADVYLAMTG 181

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--- 233
              Q +   ++ +D   +         ++           T+EEL+ H + ++ + K   
Sbjct: 182 --GQTSLFDESEQDVIQQAVTHHQVKSAVTFSRNLRLLTPTEEELEAHLEYLKLINKKSK 239

Query: 234 -NAIWDRY 240
            N +WDR 
Sbjct: 240 ENCLWDRR 247


>gi|187924850|ref|YP_001896492.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN]
 gi|187716044|gb|ACD17268.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans
           PsJN]
          Length = 244

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 10/237 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRI+E+G VE+++   T      ++ P  R++ P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARTGDRILELGCVEMVNRRLTGNNLHFYINPE-RESDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I  +F DF  + +                  L  +         IID
Sbjct: 60  TTEFLSDKPKFAEIADQFRDFIQDADLIIHNAPFDIGFLDAEFALLGLPPVKTYCGEIID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
                         V   SL      +    + +EL  H   +  L K     ++W 
Sbjct: 180 LGESHAGGDAHAPRVALSSLD----LIVVTASDDELAAHQAVLDGLDKAIKGTSVWR 232


>gi|289679441|ref|ZP_06500331.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           syringae FF5]
 gi|330975085|gb|EGH75151.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 259

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 80/246 (32%), Positives = 122/246 (49%), Gaps = 11/246 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+      RI+EIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +EFL  KP F+ +  EF++F           A +  F          +   D      ++
Sbjct: 68  NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSVL 127

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187

Query: 185 FKTNE---DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237
              ++          + +        R      R ++ EL EH+  + T+ K      +W
Sbjct: 188 GNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKACGAPPLW 247

Query: 238 DRYISS 243
            + + +
Sbjct: 248 VQMLEA 253


>gi|251788641|ref|YP_003003362.1| DNA polymerase III subunit epsilon [Dickeya zeae Ech1591]
 gi|247537262|gb|ACT05883.1| DNA polymerase III, epsilon subunit [Dickeya zeae Ech1591]
          Length = 244

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 16/242 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYLRPD-RLVDPEAYNI 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLD 119
           HGI+DEFL DKP+++ +  +F DF        + HNA FD+GF++ E +   R       
Sbjct: 66  HGISDEFLVDKPTYADVADDFLDFIRGAE--LVIHNASFDIGFMDYEFRLLGRDIPKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M     
Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTG--G 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
           Q +  F    +   +  +                   + EEL  H++ +  + K     +
Sbjct: 182 QTSLAFSMEGEGQQQAVQTETIQRISRPASALAVLYASDEELIAHEQRLDLIMKKGGSCL 241

Query: 237 WD 238
           W 
Sbjct: 242 WR 243


>gi|261868455|ref|YP_003256377.1| DNA polymerase III subunit epsilon [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413787|gb|ACX83158.1| DNA polymerase III, epsilon subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 253

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 13/247 (5%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           I+ N  R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ PN R   
Sbjct: 3   IQINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPN-RPVD 61

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P+A+K+HGITDE L DKP FS + ++F ++                          +   
Sbjct: 62  PDAIKVHGITDEMLADKPDFSQVANQFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIK 121

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             D   + DTL++AR+ +P  +N+L++LC R GI  S R+ HGALLD+ +L+DVY+ M  
Sbjct: 122 TNDICLVTDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDADILADVYLAMTG 181

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--- 233
           G + +   F  +E    +   +     +++          T+EEL  H + ++ + K   
Sbjct: 182 GQTSL---FDESEPEIIQHAGEQQVQSTVVFSHNLRLLTPTEEELQAHLEYLKLINKKSK 238

Query: 234 -NAIWDR 239
            N +W+R
Sbjct: 239 DNCLWER 245


>gi|91205177|ref|YP_537532.1| DNA polymerase III subunit epsilon [Rickettsia bellii RML369-C]
 gi|157827486|ref|YP_001496550.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389]
 gi|122425898|sp|Q1RJM1|DPO3E_RICBR RecName: Full=DNA polymerase III subunit epsilon
 gi|91068721|gb|ABE04443.1| DNA polymerase III epsilon chain [Rickettsia bellii RML369-C]
 gi|157802790|gb|ABV79513.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389]
          Length = 229

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 88/232 (37%), Positives = 129/232 (55%), Gaps = 11/232 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGLD K   RI+EIGA+E+++   T R F  +L P  R    EA ++HGI+
Sbjct: 5   REIILDTETTGLDPKGGHRIVEIGAIEMVNKVLTGRHFHFYLNPE-RDMPFEAYRIHGIS 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123
            EFLKDKP F +I  +F +F  +  ++ + HNA FDV F+N E   L+R     L+    
Sbjct: 64  GEFLKDKPLFHTIADDFLEFIAD--SKLVIHNAPFDVKFLNHELSLLKRAEIKLLELEHA 121

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +AR   P S+  L++LCKR+ +  S R  HGAL D+ LL++VY+++   G Q  F
Sbjct: 122 IDTLVMARSMFPGSKYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELTG-GRQSAF 180

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
                 D+  K    +   +           + TKEEL +H + +  + K A
Sbjct: 181 KML---DKAAKINNLSYNRLDSQAHRNIPVIKPTKEELQKHKEFLSRVLKQA 229


>gi|15642231|ref|NP_231864.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586228|ref|ZP_01676018.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80]
 gi|121726541|ref|ZP_01679790.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52]
 gi|147674786|ref|YP_001217749.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395]
 gi|153213799|ref|ZP_01949007.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587]
 gi|153817083|ref|ZP_01969750.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457]
 gi|153820811|ref|ZP_01973478.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33]
 gi|227082357|ref|YP_002810908.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2]
 gi|229507692|ref|ZP_04397197.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229512113|ref|ZP_04401592.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229519248|ref|ZP_04408691.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229607196|ref|YP_002877844.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236]
 gi|254849364|ref|ZP_05238714.1| DNA polymerase III [Vibrio cholerae MO10]
 gi|255747069|ref|ZP_05421014.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262161386|ref|ZP_06030496.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262167744|ref|ZP_06035446.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|298500392|ref|ZP_07010197.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757]
 gi|9656792|gb|AAF95377.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121549494|gb|EAX59520.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80]
 gi|121630994|gb|EAX63373.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52]
 gi|124115723|gb|EAY34543.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587]
 gi|126512351|gb|EAZ74945.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457]
 gi|126521603|gb|EAZ78826.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33]
 gi|146316669|gb|ABQ21208.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|227010245|gb|ACP06457.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2]
 gi|227014129|gb|ACP10339.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229343937|gb|EEO08912.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229352078|gb|EEO17019.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229355197|gb|EEO20118.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229369851|gb|ACQ60274.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236]
 gi|254845069|gb|EET23483.1| DNA polymerase III [Vibrio cholerae MO10]
 gi|255735471|gb|EET90871.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262023809|gb|EEY42508.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262028697|gb|EEY47351.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|297541085|gb|EFH77139.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757]
          Length = 247

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 91/242 (37%), Positives = 131/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R    EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118
           +HGITDEFLKDKP +  +  EF DF        +AHNA FDVGF++ E  +         
Sbjct: 70  VHGITDEFLKDKPEYKDVHEEFVDFIKGAE--LVAHNAPFDVGFMDYEFAKLGGAIGKTS 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
           + + F   T        E          +R        + +EL  H   +  + K+   +
Sbjct: 188 TSLQFSSVTQNSGELSAESLKRAR---SERKALKVLAASADELQAHQDRLDIVAKSGTCL 244

Query: 237 WD 238
           W 
Sbjct: 245 WR 246


>gi|30248167|ref|NP_840237.1| DNA polymerase III (epsilon chain) protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30180052|emb|CAD84052.1| probable DNA polymerase III (epsilon chain) protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 232

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 80/237 (33%), Positives = 121/237 (51%), Gaps = 11/237 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +  D ETTGLD     RI+EI AVE+ +   T+R F  +L P GR++   AL++HG+
Sbjct: 1   MRYVFLDTETTGLDPALGHRIVEIAAVEVCNRRLTDRHFHRYLNP-GRESDEGALRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL+DKP F  + SEF +F  +                   +L R         +IID
Sbjct: 60  TREFLRDKPVFQDVCSEFLEFIADAEIFIHNAPFDVGFINRELDLIRFESMQNHCLQIID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +A+  HP  RN+L++LC+RY I  SHR+ HGALLD+ LL++VY+ M  G   +    
Sbjct: 120 TLVLAKELHPGKRNNLDALCERYQIDNSHRTLHGALLDAELLAEVYLAMTRGQESLLMEM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
                R         P +  ++    +    T+ EL+ H + ++ +      N +W+
Sbjct: 180 DAPASRQADN-----PAVGKVENLALIVQPATQAELELHSRLVERINAESKGNCLWN 231


>gi|330878790|gb|EGH12939.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 259

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 83/246 (33%), Positives = 125/246 (50%), Gaps = 11/246 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+      RI+EIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +EFL  KP F+ +  EF++F           A +  F          +   D     +I+
Sbjct: 68  NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALIGAQDKADITRHCKIL 127

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187

Query: 185 FKTNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
              ++     E    + +        R      R ++ EL EH+  + T+ K     A+W
Sbjct: 188 GNASDGNGSAEGSSNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTIAKATGAPALW 247

Query: 238 DRYISS 243
            + + +
Sbjct: 248 VQMLEA 253


>gi|260767799|ref|ZP_05876734.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260617308|gb|EEX42492.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
          Length = 246

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 89/243 (36%), Positives = 133/243 (54%), Gaps = 18/243 (7%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+      EA++
Sbjct: 11  RIVVLDTETTGMNLEGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRAIQD-EAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP- 120
           +HGITDEFL DKP +  +  EF DF        +AHNA FDVGF++ E  +++       
Sbjct: 70  VHGITDEFLVDKPEYKDVHEEFLDFIRGAE--LVAHNAPFDVGFMDYEFSKLSIPTAKTD 127

Query: 121 --SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 ELCKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
           + + F   + E+       K V       R      R T +E+  H   +  + K+   +
Sbjct: 188 TSLQFSGSSQENGMGAGAIKRVAEG----RKALKVLRATADEIQAHQDRLDIVEKSGTCL 243

Query: 237 WDR 239
           W +
Sbjct: 244 WRQ 246


>gi|330829021|ref|YP_004391973.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565]
 gi|328804157|gb|AEB49356.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565]
          Length = 244

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 83/241 (34%), Positives = 122/241 (50%), Gaps = 13/241 (5%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+I+ D ETTG+++         RIIEIG VE+++   T   + V++ P+ R   PEA++
Sbjct: 8   RQIILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTGNHYHVYIKPD-RLVDPEAIQ 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGITDEFL+DKPSFS I  EF +F                          +N    D  
Sbjct: 67  VHGITDEFLRDKPSFSQIADEFLEFIRGAELIAHNAPFDVSFMDYEFSKLGLNFKTADIC 126

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            I DTL++AR   P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G +++
Sbjct: 127 TITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTKL 186

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           N   ++NE+      + T        R      R   E    H+  +  + K     +W 
Sbjct: 187 NLATESNENEN---NQDTSIRRLESNRPAIKVVRACAEVQALHEARLDLVQKKGGSCLWR 243

Query: 239 R 239
           +
Sbjct: 244 Q 244


>gi|262170796|ref|ZP_06038474.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
 gi|261891872|gb|EEY37858.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
          Length = 247

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 91/242 (37%), Positives = 135/242 (55%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R+   EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118
           +HGITDEFL+DKP +  +  EF DF  +     +AHNA FDVGF++ E  +         
Sbjct: 70  VHGITDEFLRDKPEYKDVHDEFLDFIKDAE--LVAHNAPFDVGFMDYEFAKLGGSVVKTT 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
           + + F   T       E+       S  +R        + +EL  H   +  + K+   +
Sbjct: 188 TSLQFSAATQNS---GEQGAESLKRSRSERKALKVLHASADELQAHQDRLDLVAKSGTCL 244

Query: 237 WD 238
           W 
Sbjct: 245 WR 246


>gi|253988342|ref|YP_003039698.1| DNA polymerase III subunit epsilon [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779792|emb|CAQ82953.1| putative DNA polymerase III epsilon chain [Photorhabdus
           asymbiotica]
          Length = 248

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 86/242 (35%), Positives = 127/242 (52%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R++V D ETTG++      +  +IIEIGAVE+++   T R F +++ P+ R   PEA ++
Sbjct: 7   RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHIYVKPD-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI+DEFL+DKP F+ I  EF +F        I HNA FD+GF++ E     R      D
Sbjct: 66  HGISDEFLQDKPLFADIADEFIEFIRGAE--LIIHNAPFDIGFMDYEFGKLNRDIPPTTD 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L +AR   P  RN+L++LC RY I  S R+ HGALLD+ +L+DVY+ M     
Sbjct: 124 FCKVTDSLQLARALFPGKRNNLDALCDRYDIDNSQRTLHGALLDAEILADVYLIMTG--G 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
           Q    F    +         V  I+  +         T EEL  H+  +  + K     +
Sbjct: 182 QTALAFSMEGEVSGSANVSEVQRITRPQT-ALKVIYATGEELAAHESRLDLVEKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|153829952|ref|ZP_01982619.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39]
 gi|148874587|gb|EDL72722.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39]
          Length = 247

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 91/242 (37%), Positives = 131/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R    EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118
           +HGITDEFLKDKP +  +  EF DF        +AHNA FDVGF++ E  +         
Sbjct: 70  VHGITDEFLKDKPEYKDVHEEFLDFIKGAE--LVAHNAPFDVGFMDYEFAKLSGAIGKTS 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
           + + F   T        E          +R        + +EL  H   +  + K+   +
Sbjct: 188 TSLQFSSATQNSGELSAELLKRAR---SERKALKVLAASADELQAHQDRLDIVAKSGTCL 244

Query: 237 WD 238
           W 
Sbjct: 245 WR 246


>gi|153208787|ref|ZP_01947019.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161831371|ref|YP_001596268.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331]
 gi|165920933|ref|ZP_02219603.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334]
 gi|120575749|gb|EAX32373.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161763238|gb|ABX78880.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331]
 gi|165916781|gb|EDR35385.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334]
          Length = 232

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 88/238 (36%), Positives = 127/238 (53%), Gaps = 14/238 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL  +   RIIEIGA+E+++   T      ++ P  R    +A+++HGI
Sbjct: 1   MRQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPE-RSIERDAIEIHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           TD FL DKP F  I +E   F        I HNA FDVGF+N EL+   +  K      +
Sbjct: 60  TDSFLIDKPLFKDIATELISFLKGAE--LIIHNAPFDVGFLNHELKLTGQSFKTLTHYCQ 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL+IAR+KHP   N+L++LC+RY +  S+R  HGALLD+ LL+ VY+ M  G + + 
Sbjct: 118 VLDTLTIARQKHPGQHNNLDALCRRYHVDNSNRDYHGALLDAELLAQVYLLMTGGQTVLF 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWD 238
                 +  F    +          RD     R    E + H   +Q L +N   +W+
Sbjct: 178 -----EQQGFAVASRSVSVRPLGTDRDSLSVIRANAAETEAHRAFLQLLTENGLCLWN 230


>gi|27365234|ref|NP_760762.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
 gi|37680713|ref|NP_935322.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016]
 gi|320155618|ref|YP_004187997.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
 gi|27361381|gb|AAO10289.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus CMCP6]
 gi|37199462|dbj|BAC95293.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
 gi|319930930|gb|ADV85794.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
          Length = 243

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 90/243 (37%), Positives = 134/243 (55%), Gaps = 21/243 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R+  P+A+ 
Sbjct: 11  RIVVLDTETTGMNREGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPDAID 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPL 118
           +HGITD+FL DKP +  +  EF +F        +AHNA FDVGF++ E            
Sbjct: 70  VHGITDQFLVDKPEYRQVHQEFLEFIKGAE--LVAHNAPFDVGFMDYEFGKLDAAIGKTD 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M    
Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTG-- 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
            Q +  F  N      E+ + V       R      R T +EL+ H   +  + K+   +
Sbjct: 186 GQTSLEFNANSQEGGGEDIRRVAG-----RKSLKVLRATADELEAHQSRLDIVEKSGTCL 240

Query: 237 WDR 239
           W +
Sbjct: 241 WRQ 243


>gi|229513876|ref|ZP_04403338.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|229349057|gb|EEO14014.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
          Length = 247

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 91/242 (37%), Positives = 131/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R    EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118
           +HGITDEFLKDKP +  +  EF DF        +AHNA FDVGF++ E  +         
Sbjct: 70  VHGITDEFLKDKPEYKDVHEEFLDFIKGAE--LVAHNAPFDVGFMDYEFAKLGGAIGKTS 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
           + + F   T        E          +R        + +EL  H   +  + K+   +
Sbjct: 188 TSLQFSSVTQNSGELSAESLKRAR---SERKALKVLAASADELQAHQDRLDIVAKSGTCL 244

Query: 237 WD 238
           W 
Sbjct: 245 WR 246


>gi|258621021|ref|ZP_05716055.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573]
 gi|262166312|ref|ZP_06034049.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
 gi|258586409|gb|EEW11124.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573]
 gi|262026028|gb|EEY44696.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
          Length = 247

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 90/242 (37%), Positives = 132/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R+   EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118
           +HGITDEFL+DKP +  +  EF DF        +AHNA FDVGF++ E  +         
Sbjct: 70  VHGITDEFLRDKPEYKDVHDEFLDFIKGAE--LVAHNAPFDVGFMDYEFAKLGGSVVKTT 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
           + + F   T        E          +R        + +EL  H   +  + K+   +
Sbjct: 188 TSLQFSAATQNSGELGAESLKRSR---SERKALKVLHASADELQAHQDRLDLVAKSGTCL 244

Query: 237 WD 238
           W 
Sbjct: 245 WR 246


>gi|258627375|ref|ZP_05722159.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603]
 gi|258580413|gb|EEW05378.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603]
          Length = 247

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 90/242 (37%), Positives = 133/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R+   EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118
           +HGITDEFL+DKP +  +  EF DF  +     +AHNA FDVGF++ E  +         
Sbjct: 70  VHGITDEFLRDKPEYKDVHDEFLDFIKDAE--LVAHNAPFDVGFMDYEFAKLGGSVVKTT 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
           + + F   T        E          +R        + +EL  H   +  + K+   +
Sbjct: 188 TSLQFSAATQNSGELGAESLKRSR---SERKALKVLHASADELQAHQDRLDLVAKSGTCL 244

Query: 237 WD 238
           W 
Sbjct: 245 WR 246


>gi|71733799|ref|YP_273952.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|289627521|ref|ZP_06460475.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649928|ref|ZP_06481271.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298486280|ref|ZP_07004343.1| DNA polymerase III epsilon subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554352|gb|AAZ33563.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298159287|gb|EFI00345.1| DNA polymerase III epsilon subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330868357|gb|EGH03066.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330985658|gb|EGH83761.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331012696|gb|EGH92752.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 259

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 83/246 (33%), Positives = 123/246 (50%), Gaps = 11/246 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +EFL  KP F+ +  EF++F           A +  F          +   D      I+
Sbjct: 68  NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSIL 127

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187

Query: 185 FKTNE---DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
              ++          + +        R      R ++ EL EH+  + T+ K     A+W
Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGAPALW 247

Query: 238 DRYISS 243
            + + +
Sbjct: 248 VQMLEA 253


>gi|311280820|ref|YP_003943051.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae SCF1]
 gi|308750015|gb|ADO49767.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae SCF1]
          Length = 246

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 80/242 (33%), Positives = 123/242 (50%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFNV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF ++        + HNA FD+GF++ E  ++N+     + 
Sbjct: 69  HGIADEFLLDKPTFADVCDEFLEYIRGAE--LVIHNASFDIGFMDYEFSKLNRGIAKTNT 126

Query: 123 IIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                     AR+  P  RN L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +    +   E         +    K      + EEL  H+  +  + K     +
Sbjct: 187 SMAFAMEGEAQQTQGE---AGIQRVVRAASKLRVVLASDEELMAHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|220934132|ref|YP_002513031.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995442|gb|ACL72044.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 235

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 92/240 (38%), Positives = 127/240 (52%), Gaps = 9/240 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +  N  R++V D ETTGL+  +  RIIEIG VEL+    T RTF  +L P+ R+    AL
Sbjct: 1   MSDNNHRQVVLDTETTGLEPAQGHRIIEIGCVELVGRRITRRTFHHYLQPD-REIDEGAL 59

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDP 117
            +HGI++EFL DKP F+ +  EF +F        + HNA FDVGF++ EL+         
Sbjct: 60  AVHGISNEFLADKPRFADVVDEFLEFIRGAE--LVIHNAPFDVGFLDHELKLLDAARGQV 117

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D S I+DTL +ARR HP  RN L++LCKRY I  S R  HGALLD+ +L+DVY+ M   
Sbjct: 118 TDYSSILDTLDLARRMHPGQRNSLDALCKRYQIDNSGRELHGALLDARILADVYLAMTG- 176

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
             Q              E +          R +    R ++ EL  H + ++ L   + W
Sbjct: 177 -GQTTLSLGGEAAGVNGEARAESIRRLPEARARLRVIRPSEAELQAHTRLLEKLNPPSPW 235


>gi|237748501|ref|ZP_04578981.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes OXCC13]
 gi|229379863|gb|EEO29954.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes OXCC13]
          Length = 247

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 80/238 (33%), Positives = 117/238 (49%), Gaps = 13/238 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL +   DRIIEIG VE+L    T   F  ++ P  R + P+AL +HG+
Sbjct: 1   MRQIVLDTETTGLYANNGDRIIEIGCVEVLSRHVTENHFHQYINPE-RDSHPDALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I   F D+                          + K       I D
Sbjct: 60  TTEFLSDKPKFAEIAQAFCDYIRGAELIIHNAPFDIGFLNAELARLGMPKVEEIAECITD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L  AR   P  RN L++LC+R+ I+ +HR+ HGALLDS LL++VY+ M  G   +  G 
Sbjct: 120 SLVKARDMFPGRRNSLDALCERFEISNAHRTLHGALLDSELLAEVYLAMTRGQETLEIGG 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-----AIWD 238
            + E+     +   + NI +      +    T+EEL  H++ +  + K+      +W 
Sbjct: 180 MSIEEEEAAAKAAPLSNIHI------VVLAATEEELARHEEVLDDIEKSNKGAPCVWR 231


>gi|85058570|ref|YP_454272.1| DNA polymerase III subunit epsilon [Sodalis glossinidius str.
           'morsitans']
 gi|84779090|dbj|BAE73867.1| DNA polymerase III epsilon subunit [Sodalis glossinidius str.
           'morsitans']
          Length = 252

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 81/242 (33%), Positives = 127/242 (52%), Gaps = 15/242 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHFHVYLKPD-RLVDPEAFNV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI+DEFL DKP+F+ +  EF  F        + HNA FD+GF++ E   +N+       
Sbjct: 66  HGISDEFLADKPTFADVADEFLHFIRGGE--LVIHNAPFDIGFMDYEFGMLNRGIAKTDT 123

Query: 123 IIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                     AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DV++ M  G +
Sbjct: 124 FCKVTDSLLLARKMFPGKRNSLDALCDRYLIDNSKRTLHGALLDAEILADVFLLMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +  +++    E   +  +  ++         + EE+  H++ +  + K     +
Sbjct: 184 AMRFAMEGEQEQRDVGETVQIQRVQRVQT-SLKVIYASDEEVVAHEQRLDLVQKKGGSCV 242

Query: 237 WD 238
           W 
Sbjct: 243 WR 244


>gi|293390398|ref|ZP_06634732.1| DNA polymerase III, epsilon subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950932|gb|EFE01051.1| DNA polymerase III, epsilon subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 253

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 79/247 (31%), Positives = 126/247 (51%), Gaps = 13/247 (5%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           I+ N  R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ PN R   
Sbjct: 3   IQINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPN-RPVD 61

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P+A+K+HGITDE L DKP FS   +EF ++                          +   
Sbjct: 62  PDAIKVHGITDEMLADKPDFSQAANEFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIK 121

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             D   + DTL++AR+ +P  +N+L++LC R GI  S R+ HGALLD+ +L+DVY+ M  
Sbjct: 122 TNDICLVTDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLAMTG 181

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--- 233
           G + +   F  +E    +   +     +++          T+EEL  H + ++ + K   
Sbjct: 182 GQTSL---FDESEPEIIQHAGEQQVQSAVVFSHNLRLLTPTEEELQAHLEYLKLINKKSR 238

Query: 234 -NAIWDR 239
            N +W+R
Sbjct: 239 DNCLWER 245


>gi|183601084|ref|ZP_02962577.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827]
 gi|188019425|gb|EDU57465.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827]
          Length = 253

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 90/244 (36%), Positives = 136/244 (55%), Gaps = 18/244 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P+ R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+DEFL+DKP F+ I  EF +F        I HNA FD+GF++ E  ++NKD      
Sbjct: 66  HGISDEFLQDKPVFADIADEFIEFIRGAE--LIIHNAPFDIGFMDYEFSKLNKDIPPTAD 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR+  P  RN+L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCQITDSLVMARQIFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILADVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----A 235
            + F  + +       E+    +  +           T EEL EH+K +  + K      
Sbjct: 184 SLAFSMEADTSNESYVEEVQRIDRPVS---GLRVLYATDEELIEHEKRLDIVDKKGGKPC 240

Query: 236 IWDR 239
           +W +
Sbjct: 241 LWRQ 244


>gi|67458568|ref|YP_246192.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2]
 gi|75536966|sp|Q4UN31|DPO3E_RICFE RecName: Full=DNA polymerase III subunit epsilon
 gi|67004101|gb|AAY61027.1| DNA polymerase III epsilon chain [Rickettsia felis URRWXCal2]
          Length = 229

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 85/232 (36%), Positives = 134/232 (57%), Gaps = 11/232 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGLD +   RI+EIGA+E+++   T R F  ++ P  R    +A ++HGI+
Sbjct: 5   REIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFDAYRIHGIS 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123
            EFLKDKP F +I  +F +F ++  ++ I HNA FD+ F+N E   L+R     L+ S  
Sbjct: 64  GEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRAEIKLLELSNA 121

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY+++   G Q  F
Sbjct: 122 IDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELTG-GRQSAF 180

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
                 D+  +        ++       +  + TKEEL +H + + ++ K A
Sbjct: 181 KMV---DKSVETNNLATNQVNNKTEQATIVIKPTKEELQKHKEFLSSILKTA 229


>gi|296158207|ref|ZP_06841039.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
 gi|295891543|gb|EFG71329.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
          Length = 244

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 113/237 (47%), Gaps = 10/237 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRI+E+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F  I  +F DF    +              +   L  +         IID
Sbjct: 60  TTEFLSDKPKFGEIADQFRDFIQGADLIIHNAPFDIGFLDVEFALLGLPPVSTYCGEIID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +    
Sbjct: 120 TLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
                         V   SL      +    + +E   H   +  L K     ++W 
Sbjct: 180 LGESHAGGDARAPRVAIDSLD----LVVIAASDDEFAAHQAVLDGLDKAIKGTSVWR 232


>gi|58617240|ref|YP_196439.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Gardel]
 gi|58416852|emb|CAI27965.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Gardel]
          Length = 242

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 93/241 (38%), Positives = 140/241 (58%), Gaps = 9/241 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   N +R+IV D ETTGLD+   DRIIE+G +EL+D   T + F  ++ P  R     A
Sbjct: 1   MSYYNGIREIVLDTETTGLDADGGDRIIEMGCIELIDRVFTGKVFHEYINPE-RDIPYYA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGIT + LKDKP FS I  +F DF    N+  + HNA FD+ FI  EL +I K    
Sbjct: 60  TKIHGITVDMLKDKPKFSEIADKFLDFI--GNSVLVIHNAVFDIKFIKMELDKIQKSYNS 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +++DTL +AR+K P   + L++LCKR+ I++  R  HGALLD+ LL  VY+++M  G 
Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCKRFNISLQDRKFHGALLDATLLGKVYVQLMG-GL 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
           Q +  F+ N   F   +     + S ++   P   ++++EE+ +H   ++ + KN IW+ 
Sbjct: 177 QRSLNFQDNSGMFQSSDYSHDVSRSYIE---PRLYKVSEEEIVKHRMLLEKI-KNPIWNN 232

Query: 240 Y 240
            
Sbjct: 233 I 233


>gi|229522180|ref|ZP_04411597.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229341105|gb|EEO06110.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
          Length = 247

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 91/242 (37%), Positives = 132/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R    EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118
           +HGITDEFLKDKP +  +  EF DF        +AHNA FDVGF++ E  +         
Sbjct: 70  VHGITDEFLKDKPEYKDVHEEFLDFIKGAE--LVAHNAPFDVGFMDYEFAKLGGAIGKTS 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
           + + F   T        E          +R        + +EL  H   ++ + K+   +
Sbjct: 188 TSLQFSSVTQNSGELSAESLKRAR---SERKALKVLAASADELQAHQDRLEIVAKSGTCL 244

Query: 237 WD 238
           W 
Sbjct: 245 WR 246


>gi|238799153|ref|ZP_04642606.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969]
 gi|238716994|gb|EEQ08857.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969]
          Length = 259

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 85/249 (34%), Positives = 133/249 (53%), Gaps = 17/249 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 12  RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+DEFL DKP+F+ I  EF +F        I HNA FD+GF++ E + + +D      
Sbjct: 71  HGISDEFLADKPTFAEITPEFLEFIRGAE--LIIHNAAFDIGFMDYEFRMLQQDIPKTET 128

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G +
Sbjct: 129 FCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            ++F  + ++ +    +                     ++EL  H+  +  + K     +
Sbjct: 189 SLSFSMEGDQSQSDSSDDIQRITRPAS---GLKIIYAAEDELAAHESRLDLVMKKGGSCL 245

Query: 237 WDRYISSNQ 245
           W   + S  
Sbjct: 246 WRMPLESED 254


>gi|77166266|ref|YP_344791.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani ATCC
           19707]
 gi|254435200|ref|ZP_05048707.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani AFC27]
 gi|76884580|gb|ABA59261.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani ATCC
           19707]
 gi|207088311|gb|EDZ65583.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani AFC27]
          Length = 243

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 93/247 (37%), Positives = 132/247 (53%), Gaps = 12/247 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ K   RIIEIG VEL    +T RTF  +L P  R+    ALK+HG+
Sbjct: 1   MRQIILDTETTGLEPKEGHRIIEIGGVELSCRRRTGRTFHCYLNPE-REVDKGALKIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           ++EFL DKP F  I  EF  F        + HNA FDVGF++ EL              +
Sbjct: 60  SNEFLSDKPRFIEIAEEFLAFIEGAE--LVIHNAPFDVGFLDHELCLLGSKWGKISTDCQ 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR++HP  +N+L++LCKRYGI  S R  HGALLD+ +L+ VY+ M  G   ++
Sbjct: 118 VLDTLQLARQRHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILAGVYLAMTGGQVSLS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                +    F+        +S  +R      R ++EE   HD  +  + K      +W 
Sbjct: 178 LHEYGDNGLPFRVGGGNYRPVS-AERASLTIARASREERMAHDARLTAIDKASGGACLWR 236

Query: 239 RYISSNQ 245
           +  SS  
Sbjct: 237 QLDSSPD 243


>gi|157147189|ref|YP_001454508.1| DNA polymerase III subunit epsilon [Citrobacter koseri ATCC
           BAA-895]
 gi|157084394|gb|ABV14072.1| hypothetical protein CKO_02968 [Citrobacter koseri ATCC BAA-895]
          Length = 246

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 131/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI DEFL DKP F+ +  +F ++        + HNA FD+GF++ E  ++++       
Sbjct: 69  HGIADEFLLDKPVFADVVDDFLEYIRGAE--LVIHNASFDIGFMDYEFAKLSRGIPKTSE 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++ARR  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKITDSLALARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F     E    +++ +      + +  K      T EEL  H+  +  + K     +
Sbjct: 187 SMAFSM---EGETQQQQGEATIQRIVRQASKLRVVLATDEELMAHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|227329796|ref|ZP_03833820.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 245

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 81/242 (33%), Positives = 125/242 (51%), Gaps = 16/242 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI+DEFL DKP+++ I  +F DF        + HNA FD+GF++ E + +N+D      
Sbjct: 66  HGISDEFLADKPTYADIVDDFLDFIRGAE--LVIHNATFDIGFMDYEFRLLNRDLPKTET 123

Query: 123 IIDTLS---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                    +AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M     
Sbjct: 124 FCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTG--G 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
           Q +  F    +   K E        +  +         + EL  H++ +  + K     +
Sbjct: 182 QTSLTFSMEGETQQKSENTETIQRIVRPQSALKVLYADEAELLAHEQRLDLIAKKGGSCL 241

Query: 237 WD 238
           W 
Sbjct: 242 WR 243


>gi|293392715|ref|ZP_06637034.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera
           DSM 4582]
 gi|291424832|gb|EFE98042.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera
           DSM 4582]
          Length = 245

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 80/243 (32%), Positives = 125/243 (51%), Gaps = 18/243 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R + V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI+DEFL DKP+F  I  EF +F        + HNA FD+GF++ E + + +D      
Sbjct: 66  HGISDEFLADKPTFDQIADEFIEFIRGGE--LVIHNAAFDIGFMDHEFRMLQQDIPKTET 123

Query: 123 IIDTLS---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                    +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCAITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NA 235
            + F  + +  +    +                    + +E+  H+  +  + K    N 
Sbjct: 184 TMAFQMEGDTQQSDSTQDIQRIARPAT---SMKVIYASDDEVVAHESRLDLVAKKGGGNC 240

Query: 236 IWD 238
           +W 
Sbjct: 241 LWR 243


>gi|261211353|ref|ZP_05925641.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
 gi|260839308|gb|EEX65934.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
          Length = 247

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 89/242 (36%), Positives = 132/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R+   EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118
           +HGITDEFL+DKP +  + +EF DF        +AHNA FDVGF++ E  +         
Sbjct: 70  VHGITDEFLRDKPEYKEVHAEFLDFIKGAE--LVAHNAPFDVGFMDYEFAKLGSSIGKTT 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
           + + F   +        E           R          +EL  H + +  + K+   +
Sbjct: 188 TSLQFSASSQNSGELGAESLKRAR---SGRKALKVLHANADELQAHQERLDLVAKSGTCL 244

Query: 237 WD 238
           W 
Sbjct: 245 WR 246


>gi|157369157|ref|YP_001477146.1| DNA polymerase III subunit epsilon [Serratia proteamaculans 568]
 gi|157320921|gb|ABV40018.1| DNA polymerase III, epsilon subunit [Serratia proteamaculans 568]
          Length = 246

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 18/249 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI     R+IV D ETTG++      +  RIIEIGA+E+++   T R + V++ P+ R  
Sbjct: 1   MISTTT-RQIVLDTETTGMNKLGVHYEGHRIIEIGALEVINRRPTGRHYHVYIKPD-RLV 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI+DEFL DKP+F+ I  EF DF        + HNA FD+GF++ E + + +
Sbjct: 59  DPEAYGVHGISDEFLADKPTFAQIADEFIDFIRGGE--LVIHNAAFDIGFMDHEFRMLQQ 116

Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                     I D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+
Sbjct: 117 GIPKTDTFCTITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYL 176

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G + + F  + +       +        +           + EE+  H+  +  + 
Sbjct: 177 AMTGGQTSMAFQMEGDTQNSNSTQDIQRI---VRPATTMKVVYASDEEVVAHEARLDLVA 233

Query: 233 KN---AIWD 238
           K     +W 
Sbjct: 234 KKGGSCLWR 242


>gi|157826195|ref|YP_001493915.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford]
 gi|157800153|gb|ABV75407.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford]
          Length = 229

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 83/232 (35%), Positives = 133/232 (57%), Gaps = 11/232 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGLD +   RI+EI A+E+++   T R F  ++ P  R    +A ++HGI+
Sbjct: 5   REIILDTETTGLDPRQGHRIVEIAAIEMMNKVLTGRNFHFYINPE-RDIPFDAYRIHGIS 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123
            EFLKDKP F +I  +F +F  +  ++ + HNA FD+ F+N E   L+R     L+ S  
Sbjct: 64  GEFLKDKPLFHTIADDFLEFIAD--SKLVIHNAPFDIKFLNHELSLLKRAEIKLLELSNA 121

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY+++   G Q +F
Sbjct: 122 IDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELTG-GRQSSF 180

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
                 D+        +  ++       +  + TKEEL +H + + ++ K A
Sbjct: 181 KMV---DKSAGINNLAINQVNSKTEQASIVIKPTKEELQKHKEFLSSILKTA 229


>gi|330889978|gb|EGH22639.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 259

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 83/246 (33%), Positives = 123/246 (50%), Gaps = 11/246 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +EFL  KP F+ +  EF++F           A +  F          +   D      I+
Sbjct: 68  NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITLHCSIL 127

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187

Query: 185 FKTNE---DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
              ++          + +        R      R ++ EL EH+  + T+ K     A+W
Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGAPALW 247

Query: 238 DRYISS 243
            + + +
Sbjct: 248 VQMLEA 253


>gi|319775991|ref|YP_004138479.1| DNA polymerase III subunit epsilon [Haemophilus influenzae F3047]
 gi|329123857|ref|ZP_08252414.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           aegyptius ATCC 11116]
 gi|317450582|emb|CBY86799.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3047]
 gi|327468820|gb|EGF14294.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           aegyptius ATCC 11116]
          Length = 256

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 128/256 (50%), Gaps = 15/256 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG+       +  RIIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMSQLGAHYEGHRIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N                        +N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFHKLNLNV 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ M 
Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177

Query: 176 VGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            G + +       ++   R  +E+       ++         + T +EL  H + ++ + 
Sbjct: 178 GGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKMMN 237

Query: 233 K----NAIWDRYISSN 244
           K    N +WD+   +N
Sbjct: 238 KKSGNNCLWDKRFGNN 253


>gi|224824456|ref|ZP_03697563.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224602949|gb|EEG09125.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 242

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 110/237 (46%), Gaps = 12/237 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  +  RIIE   +E+++   T R+  +++ P  R   P+A ++HGI
Sbjct: 1   MRQIILDTETTGLEPSQGHRIIEFAGLEMVNRKLTGRSLHLYIHPE-RDIDPDAERVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL DKP F+++  E  DF  +                   +   I +     + +ID
Sbjct: 60  SLDFLADKPRFAAVGPEIADFLRDAELIIHNAPFDVGFLNAEFDRIGIERVSTLCASVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR + P  RN L++LC R+ I  S+R+ HGAL+D  LL +VY+ M  G + +    
Sbjct: 120 TLVMARDQFPGKRNSLDALCDRFEIDRSNRTLHGALIDCELLGEVYLWMTRGQNSLVMDI 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
             +                  +R      R   EEL  H   +  L K      +W 
Sbjct: 180 DLDVGGGADLGALE------FERKPIKILRPNAEELAAHATYLDDLDKAVKGTCLWR 230


>gi|242240256|ref|YP_002988437.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech703]
 gi|242132313|gb|ACS86615.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech703]
          Length = 244

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 82/242 (33%), Positives = 131/242 (54%), Gaps = 16/242 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R++V D ETTG++      +  RIIEIGAVE+++   T R + V+L P+ R   PEA ++
Sbjct: 7   RQVVLDTETTGMNRLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYLKPD-RLVDPEAFQI 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+DEFL D+P+++ I  EF +F        + HNA FD+GF++ E + +N+D      
Sbjct: 66  HGISDEFLIDRPAYADIVDEFIEFIRGAE--LVIHNASFDIGFMDYEFRMLNRDIPKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++ARR  P  RN+L+ LC RY I  S R+ HGALLD+ +L++VY+ M     
Sbjct: 124 FCKITDSLAMARRLFPGKRNNLDVLCTRYQIDNSKRTLHGALLDAEILAEVYLAMTG--G 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
           Q +  F ++ +   +                        +EL  H++ +  + K     +
Sbjct: 182 QTSLAFSSDSEGTQQAVVAEAIQRIARPASALKVIHANDDELMAHEQRLDLVMKKGGSCL 241

Query: 237 WD 238
           W 
Sbjct: 242 WR 243


>gi|330959421|gb|EGH59681.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 259

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 85/255 (33%), Positives = 127/255 (49%), Gaps = 12/255 (4%)

Query: 1   MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M+ KN   R +V D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   
Sbjct: 1   MVDKNGTHRAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKD 116
           A+ +HGIT+EFL  KP F+ +  EF++F           A +  F          +   D
Sbjct: 60  AIGVHGITNEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGAQDKAD 119

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                 I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L++VY+ M  
Sbjct: 120 ITRHCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILAEVYLAMTG 179

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVP---NISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           G + ++     ++     E   +           R      R ++ EL EH+  + T+ K
Sbjct: 180 GQTSLSLAGNASDGNGSGEGGSSRGSEIRRLPADRLPCRVIRASESELAEHEVRMNTIAK 239

Query: 234 N----AIWDRYISSN 244
                A+W + + + 
Sbjct: 240 ASGAPALWVQMLEAE 254


>gi|170726953|ref|YP_001760979.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908]
 gi|169812300|gb|ACA86884.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908]
          Length = 242

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 76/240 (31%), Positives = 120/240 (50%), Gaps = 16/240 (6%)

Query: 8   RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+I+ D ETTG++          RIIEIG VE+++   T R +  ++ P  +    EA++
Sbjct: 9   RQIILDTETTGMNQGAGAIFLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QIIDEEAIE 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDPLDP 120
           +HGIT+EF+  KP F+ +   F +F +         N          + LQ +     D 
Sbjct: 68  VHGITNEFVAHKPKFAEVAQSFIEFIDGAEIVAHNANFDVSFMDHEFSLLQPVGPKTADI 127

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             I+DTL IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+ M     Q
Sbjct: 128 CPILDTLEIAKFLHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILADVYLMMTG--GQ 185

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWD 238
             F   + ++       + +       R+K      T +EL  H++ +  + K+   IW 
Sbjct: 186 TKFNLSSEKEGSESGGIRRLSQ----SRNKLKVITATADELAMHEERLNLVAKSGQCIWR 241


>gi|114332140|ref|YP_748362.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91]
 gi|114309154|gb|ABI60397.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91]
          Length = 234

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 78/237 (32%), Positives = 123/237 (51%), Gaps = 11/237 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +  D ETTGLD     RI+EI AVE+ +   T R F  +L P GR++   AL++HG+
Sbjct: 1   MRYVFLDTETTGLDPALGHRIVEIAAVEVCNRRSTGRHFHRYLNP-GRESDEGALRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL+DKP+F  I SEF +F  +                    L R+        +I+D
Sbjct: 60  SREFLQDKPAFQEICSEFLEFIEDAEILIHNAPFDVGFINRELGLIRLEPMHNYCLQIVD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +A+  HP  RN+L++LC+RY I  +HR+ HGALLD+ LL++VY+ M  G   +    
Sbjct: 120 TLMLAKELHPGKRNNLDALCERYQIDNAHRTLHGALLDAELLAEVYLAMTRGQESLLMEP 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
           +  E       K     +   +    +   +++ EL+ HD+ ++ +      N +W+
Sbjct: 180 EVPE-----AGKSGDSRLRATENLTLIVQPVSQTELELHDRLLERINTESKGNCLWN 231


>gi|270263405|ref|ZP_06191674.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13]
 gi|270042289|gb|EFA15384.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13]
          Length = 246

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 85/249 (34%), Positives = 128/249 (51%), Gaps = 18/249 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI     R+IV D ETTG++      +  RIIEIGAVE+++   T R + V++ P+ R  
Sbjct: 1   MISTTT-RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPD-RLV 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI+DEFL DKP+F  I  EF DF        + HNA FD+GF++ E + + K
Sbjct: 59  DPEAYGVHGISDEFLADKPTFDQIADEFIDFIRGGE--LVIHNASFDIGFMDHEFRMLQK 116

Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                     I D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+
Sbjct: 117 GLPKTDTFCTITDSLLMARRLFPGKRNNLDALCGRYEIDNSKRTLHGALLDAEILAEVYL 176

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G + + F  + +       +        +           +  E+  H+  +  + 
Sbjct: 177 AMTGGQTSMAFQMEGDTQHNDSTQDIQRI---VRPATAMKVVYASDAEVVAHEARLDLVA 233

Query: 233 KN---AIWD 238
           K     +W 
Sbjct: 234 KKGGSCLWR 242


>gi|58579186|ref|YP_197398.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417812|emb|CAI27016.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 242

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 92/241 (38%), Positives = 139/241 (57%), Gaps = 9/241 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   N +R+I  D ETTGLD+   DRIIE+G +EL+D   T + F  ++ P  R     A
Sbjct: 1   MSYYNGIREIALDTETTGLDADGGDRIIEMGCIELIDRVFTGKVFHEYINPE-RDIPYYA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGIT + LKDKP FS I  +F DF    N+  + HNA FD+ FI  EL +I K    
Sbjct: 60  TKIHGITVDMLKDKPKFSEIADKFLDFI--GNSVLVIHNAVFDIKFIKMELDKIQKSYNS 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +++DTL +AR+K P   + L++LCKR+ I++  R  HGALLD+ LL  VY+++M  G 
Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCKRFNISLQDRKFHGALLDATLLGKVYVQLMG-GL 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
           Q +  F+ N   F   +     + S ++   P   ++++EE+ +H   ++ + KN IW+ 
Sbjct: 177 QRSLNFQDNSSMFQSSDYSHDVSRSYIE---PRLYKVSEEEIVKHKMLLEKI-KNPIWNN 232

Query: 240 Y 240
            
Sbjct: 233 I 233


>gi|157964873|ref|YP_001499697.1| DNA polymerase III subunit epsilon [Rickettsia massiliae MTU5]
 gi|157844649|gb|ABV85150.1| DNA polymerase III epsilon chain [Rickettsia massiliae MTU5]
          Length = 229

 Score =  138 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 86/232 (37%), Positives = 133/232 (57%), Gaps = 11/232 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGLD +   RI+EIGA+E+++   T R F  ++ P  R    EA ++HGI+
Sbjct: 5   REIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGIS 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123
            EFLKDKP F +I  +F +F ++  ++ I HNA FD+ F+N E   L+R     L+ +  
Sbjct: 64  GEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTEIKLLELANT 121

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY+++M  G Q  F
Sbjct: 122 IDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELMG-GRQSAF 180

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
                 D+           ++       +  + TKEEL +H + +  + K A
Sbjct: 181 KMV---DKSAGINNLATNQVNNQTEQATIVIKPTKEELQKHKEFLSRILKTA 229


>gi|16124261|ref|NP_418825.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15]
 gi|221232944|ref|YP_002515380.1| DNA polymerase III subunit epsilon [Caulobacter crescentus NA1000]
 gi|13421091|gb|AAK21993.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15]
 gi|220962116|gb|ACL93472.1| DNA polymerase III, epsilon chain [Caulobacter crescentus NA1000]
          Length = 237

 Score =  138 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 85/235 (36%), Positives = 132/235 (56%), Gaps = 9/235 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTG D K  DR++EIG +E++D+  T R+F  +  P  R    EA K+HG++
Sbjct: 3   REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEYCDP-LRDMPAEAEKVHGLS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             FL  KP F  I   F DF  +  +  +AHNA FD  F+N EL++  K P+   R +DT
Sbjct: 62  SAFLTGKPKFHEIADRFLDFVGD--SVVVAHNAAFDRQFVNFELEKCGKAPIHEERWVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LCKR+ I++  R KHGAL+D+HLL++VY++ + GG +      
Sbjct: 120 LAMAKKRFPGMYNSLDALCKRFKISLESRDKHGALIDAHLLAEVYLE-LQGGKERALELT 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWDRY 240
            +          T        R +PL  R T  E + H   + + L   A+W ++
Sbjct: 179 HSTGAMA---VSTAIQGVYAARSRPLAPRSTDAEREIHAAWVRKNLKDKALWIQF 230


>gi|226939810|ref|YP_002794883.1| DnaQ [Laribacter hongkongensis HLHK9]
 gi|226714736|gb|ACO73874.1| DnaQ [Laribacter hongkongensis HLHK9]
          Length = 240

 Score =  138 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 13/240 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+ D ETTGLD ++ R+IE+  +E+++   T R   +++ P  R   P+A ++HGI+
Sbjct: 1   MRQIILDTETTGLDPQSHRLIEVAGLEMVNRKLTGRHLHLYIHPQ-RDIDPDAQRVHGIS 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + L+ KP F ++  E  DF  +                       +         +IDT
Sbjct: 60  LDMLEGKPVFKAVAGEIADFLRDAELIIHNAAFDIGFLNAEFARVGLPATQKVAGNVIDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++AR   P  RN+L++LC R+ I  S+R+ HGAL+D  LL+DVY+ M  G   +    +
Sbjct: 120 LAMAREIFPGKRNNLDALCDRFDIDRSNRTLHGALIDCELLADVYLAMTRGQESLEMAIE 179

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYIS 242
            ++             + L  R   +  + ++ E   H + ++ L K      +W  Y  
Sbjct: 180 PDQGEGG--------TLRLGNRKPLVVQKASEAECAVHSRYLELLDKKAGGPCVWRDYEP 231


>gi|89094533|ref|ZP_01167472.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Oceanospirillum sp. MED92]
 gi|89081269|gb|EAR60502.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Oceanospirillum sp. MED92]
          Length = 236

 Score =  138 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 78/236 (33%), Positives = 124/236 (52%), Gaps = 11/236 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+  +   IIEIG VE+ +   T +T+  ++ P+ R    EA+++HGI
Sbjct: 1   MRQIVLDTETTGLEPSEGHNIIEIGCVEMFNRRLTGKTYHQYIKPD-RDVDAEAIQVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+EFL+DKP F  +  EF +F                      +     +   + S + D
Sbjct: 60  TNEFLEDKPKFHEVMEEFVEFVRGAELIIHNAAFDIGFLDTELDRNGYPERMENFSLVTD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L +AR+KHP  +N+L++LC RYGI  SHR  HGALLDS +L+DVY+ +  G + ++   
Sbjct: 120 SLKLARKKHPGQKNNLDALCNRYGINNSHRELHGALLDSEILADVYLALTGGQTNLSLAG 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
           + ++        K +        D     +I++ +  EHDK ++ L K      +W
Sbjct: 180 EGDDGEGAGAVIKRLSGA-----DDLPLVQISENDQQEHDKFLKMLDKKSGGECLW 230


>gi|300112990|ref|YP_003759565.1| DNA polymerase III subunit epsilon [Nitrosococcus watsonii C-113]
 gi|299538927|gb|ADJ27244.1| DNA polymerase III, epsilon subunit [Nitrosococcus watsonii C-113]
          Length = 243

 Score =  138 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 89/244 (36%), Positives = 131/244 (53%), Gaps = 12/244 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ K   RIIEIG VEL    +T +TF  +L P  R+    ALK+HG+
Sbjct: 1   MRQIILDTETTGLEPKEGHRIIEIGGVELNCRRRTGQTFHCYLNPE-REVDEGALKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           ++EFL DKP F  I  EF  F        + HNA FDVGF++ EL              +
Sbjct: 60  SNEFLSDKPRFIEIAEEFLAFIKGAE--LVIHNAPFDVGFLDHELYLLGSNWGKVSVNCQ 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR++HP  +N+L++LCKRYGI  S R  HGALLD+ +L+ VY+ M  G   ++
Sbjct: 118 VLDTLQLARQRHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILAGVYLAMTGGQVSLS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                +     +  +     +S  +R      R ++EE   H+  +  + K      +W 
Sbjct: 178 LHEYGDNSTSSRSGEGNYRPVS-AERAPLKIARASREEQRAHEACLTAIDKTSAGACVWH 236

Query: 239 RYIS 242
           +  S
Sbjct: 237 QLDS 240


>gi|145589210|ref|YP_001155807.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047616|gb|ABP34243.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 236

 Score =  138 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 70/237 (29%), Positives = 110/237 (46%), Gaps = 12/237 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+    DR+IEIG VE++D   T+RTF  ++ P  R     A  +HG+
Sbjct: 1   MRQVILDTETTGLNPATGDRVIEIGCVEVIDRRLTDRTFHYYINPE-RDIDAGAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F +I  +  +F +                     L +        S++ID
Sbjct: 60  SREFLSDKPVFGNIAEQLIEFVDGAEIVIHNAAFDLGFLDNEFALLKRPPFRGLASKVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  AR+  P  RN L++LC+R+ I+  HR+ HGALLD+ LL++VYI M  G   ++   
Sbjct: 120 TLLDARQMFPGKRNSLDALCERFSISNKHRTLHGALLDAQLLAEVYIAMTRGQEDLSIDL 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
                                          + ++   H+K +  +     K+ +W 
Sbjct: 180 IDYTVGADSSGHMKELPTD------LRVLAASDDDCQLHEKILAEIAKASKKDPVWS 230


>gi|146278706|ref|YP_001168865.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556947|gb|ABP71560.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 237

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 94/235 (40%), Positives = 135/235 (57%), Gaps = 8/235 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  +  RI+EIGAVEL ++  T RT+  ++ P  R    EA ++HG+
Sbjct: 9   MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 67

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL+DKP FS I S F +F  E     + HNA FD+ F+N EL R+    L   R +D
Sbjct: 68  GDEFLRDKPVFSEIGSAFLEFVGEAR--LVIHNAAFDMKFLNFELGRVGLPRLPFERALD 125

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR++ P +   L++LC+R+G+  S R KHGALLDS +L++VY++++  G Q +FG 
Sbjct: 126 TLALARKRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELIG-GRQPDFGL 184

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
                      +          R   L  RIT+EE   H   +  LG  AIW + 
Sbjct: 185 SAASGTRSGGAEG---EWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIWLKR 236


>gi|24374102|ref|NP_718145.1| DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1]
 gi|24348589|gb|AAN55589.1|AE015697_11 DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1]
          Length = 242

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 80/246 (32%), Positives = 118/246 (47%), Gaps = 16/246 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++          RIIEIG VE+++   T R +  ++ P G+  
Sbjct: 3   IISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRIN 114
            PEA+ +HGITDE + ++P F  I  EF DF +         N          + LQ + 
Sbjct: 62  DPEAIAVHGITDERVANEPRFHQIAQEFIDFISGAEIVAHNANFDVSFMDHEFSLLQPLG 121

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               D   I+D+L IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+ M
Sbjct: 122 PKTRDICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVYLSM 181

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233
                Q  F     E        +     SL           + +EL  H+K +  + K 
Sbjct: 182 TG--GQTKFNLSNEEVGQEGGGIQRFDPTSL----NLKVICASADELVMHEKRLDLVAKS 235

Query: 234 -NAIWD 238
              +W 
Sbjct: 236 GKCLWR 241


>gi|238921062|ref|YP_002934577.1| DNA polymerase III subunit epsilon [Edwardsiella ictaluri 93-146]
 gi|238870631|gb|ACR70342.1| DNA polymerase III, epsilon subunit, putative [Edwardsiella
           ictaluri 93-146]
          Length = 243

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 86/242 (35%), Positives = 127/242 (52%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPD-RLVDPEAFTV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLD 119
           HGI+D+FL DKPSF+ +  EF  F        + HNA FD+GF++ E     R       
Sbjct: 66  HGISDDFLLDKPSFAEVADEFLAFIRGAE--LVIHNAPFDIGFMDYEFAKLGRDLPKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M     
Sbjct: 124 FCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMTG--G 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
           Q    F ++ D   + +   +  +    +        ++ EL  H++ +  + K     +
Sbjct: 182 QTLLAFSSDGDGASQSQASEIRRVVRGAK-GLRVVYASEVELAAHEQRLDLVQKKGDSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|217970689|ref|YP_002355923.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|217508016|gb|ACK55027.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 239

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 81/236 (34%), Positives = 120/236 (50%), Gaps = 11/236 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD +  DR+IEIG VELLD S T R + V++ P GR    EA+ +HGI
Sbjct: 1   MRQIVLDTETTGLDWRNGDRVIEIGCVELLDRSLTGRHYHVYINP-GRGIDAEAVAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+EFL DKP F+ I ++F DF  +        +          E     K     + ++D
Sbjct: 60  TEEFLADKPKFADIVADFEDFVRDAELVIHNASFDVGFLDAELERLGRAKLGALCAGVVD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +A+ ++P  +  L++LC RY I  +HR  HGALLD+ LL++V++ M  G   +  G 
Sbjct: 120 TLKLAKEQNPGKKASLDALCDRYEIDNAHRELHGALLDAELLAEVFLAMTRGQESLMIGL 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
                    + + T      + R      R + +E   HD  +  + K      +W
Sbjct: 180 DEEAAPRESDSEGT-----PVLRAAVRVLRASADECAAHDAALADIAKANKGLCLW 230


>gi|271501671|ref|YP_003334697.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech586]
 gi|270345226|gb|ACZ77991.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech586]
          Length = 244

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 82/242 (33%), Positives = 126/242 (52%), Gaps = 16/242 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYLRPD-RLIDPEAYNV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLD 119
           HGI+DEFL DKP+++ +  +F DF        + HNA FD+GF++ E +   R       
Sbjct: 66  HGISDEFLADKPTYAEVADDFIDFIRGAE--LVIHNASFDIGFMDYEFRLLGRDIPKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M     
Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTG--G 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
           Q +  F    +   +  +                   + +EL  H++ +  + K     +
Sbjct: 182 QTSLAFSMEGESQQQTVQAETIQRISRPTSALTVLYASDDELVAHEQRLDLIMKKGGSCL 241

Query: 237 WD 238
           W 
Sbjct: 242 WR 243


>gi|317047021|ref|YP_004114669.1| DNA polymerase III subunit epsilon [Pantoea sp. At-9b]
 gi|316948638|gb|ADU68113.1| DNA polymerase III, epsilon subunit [Pantoea sp. At-9b]
          Length = 243

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 83/249 (33%), Positives = 127/249 (51%), Gaps = 18/249 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F ++L P+ R  
Sbjct: 1   MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHIYLKPD-RLV 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---ELQR 112
            PEA  +HGI DEFL DKPSFS I  EF D+        + HNA FD+GF++     L+R
Sbjct: 59  DPEAFGVHGIADEFLADKPSFSDIADEFLDYIRGAE--LVIHNASFDIGFMDYEFAMLKR 116

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                    ++ D+L++AR+  P  RN L++LC R  I  S R+ HGALLD+ +L++V++
Sbjct: 117 DIGKTDTFCQVTDSLAMARKMFPGKRNSLDALCSRLEIDNSKRTLHGALLDAEILAEVFL 176

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            +  G + + F  ++ +      E        +           + EE   H+  +  + 
Sbjct: 177 TLTGGQTSLAFSMESEQSNQVDGENIQRI---VRPASGLRVVSASDEECLAHESRLDLVM 233

Query: 233 KN---AIWD 238
           K     +W 
Sbjct: 234 KKGGSCLWR 242


>gi|291613978|ref|YP_003524135.1| DNA polymerase III, subunit epsilon [Sideroxydans lithotrophicus
           ES-1]
 gi|291584090|gb|ADE11748.1| DNA polymerase III, epsilon subunit [Sideroxydans lithotrophicus
           ES-1]
          Length = 233

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 85/242 (35%), Positives = 130/242 (53%), Gaps = 15/242 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD K   RIIE+ A+EL     + RTF  ++ P  R+    A  +HG+
Sbjct: 1   MRQIVLDTETTGLDPKQGHRIIEVAAIELNGRKVSERTFHRYINPE-REIDEGAAAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + L+D+P F+ +     +F        I HNA FD+GF+NAEL  +   PL  + +ID
Sbjct: 60  TLDRLQDEPKFAEVAPALLEFIAGAE--LIIHNAPFDIGFLNAELA-LAGLPLLNNPVID 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +A+  HP  +N+LN+LC RY +  SHR+ HGALLD+ LL++VY+ M  G   +    
Sbjct: 117 TLKVAKELHPGKKNNLNALCDRYQVDNSHRTLHGALLDTELLAEVYLGMTRGQESLLGEE 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRYI 241
           ++ ED            +S+           +++EL  H   ++ + K    + +W R  
Sbjct: 177 RSEEDGVQFTASGEAICLSV------RVLPASEDELALHRAQLEDIEKASKGSCLWKRLE 230

Query: 242 SS 243
           + 
Sbjct: 231 TQ 232


>gi|294340001|emb|CAZ88365.1| DNA polymerase III subunit epsilon [Thiomonas sp. 3As]
          Length = 239

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 82/238 (34%), Positives = 130/238 (54%), Gaps = 17/238 (7%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL+    DRIIE+  VEL +   T + +  +L P+ R + P+ALK+HG+T
Sbjct: 3   RQIVLDTETTGLNPASGDRIIEVAGVELFNRRLTGKHYHAYLNPD-RASHPDALKVHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +EFL DKP F+ I  +  +F  +       HNA FD  F++AEL+R+N+        + T
Sbjct: 62  EEFLSDKPRFAQIADDLLEFVRDAEII--IHNAPFDCAFLDAELERLNRPAFKQHVPLVT 119

Query: 127 LS--IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            +  +A+ + P   N+L++LCKR+GI  +HR+ HGALLD+ LL++VY+ +  G   +   
Sbjct: 120 DTLAMAKLQFPGKFNNLDALCKRFGIDNAHRTLHGALLDAELLAEVYLSLTRGQESLVID 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
            +T + +      +       L     L    + +E   H+  +Q L K     +IW 
Sbjct: 180 LETPQQQMSVASHR-------LDHFSLLVRAPSSDEQAAHEAFLQLLDKKSQGKSIWR 230


>gi|302381472|ref|YP_003817295.1| DNA polymerase III subunit epsilon [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192100|gb|ADK99671.1| DNA polymerase III, epsilon subunit [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 247

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 88/240 (36%), Positives = 134/240 (55%), Gaps = 8/240 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG D +  DR+IE+G +E+LD   T RTF  F+ P  R    +A+++HGIT
Sbjct: 3   REIVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPE-RLIPADAIRVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +KD P F+ I  +  DF  +  A  IAHNA+FD  FI+ E  R     L  +R IDT
Sbjct: 62  DDKVKDAPKFAQIVVDLMDFIGD--APVIAHNAQFDRNFIDHECGRCGHPLLHETRWIDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +A+++ P   N L++LCKRY I++  R+ HGAL+D+ LL++VY++ + GG +      
Sbjct: 120 LQLAQKRFPGMANSLDALCKRYKISLVDRTLHGALIDARLLAEVYLE-LKGGKERVLDLS 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWDRYISSNQ 245
           +  +              L  R +PL  R+   E + H   +  TL   ++W+ Y    +
Sbjct: 179 SRRESVAAAAHAAAGGYGL--RPRPLAPRLHASEGEAHAAFLAATLKDLSLWEGYGLVAE 236


>gi|253689504|ref|YP_003018694.1| DNA polymerase III, epsilon subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756082|gb|ACT14158.1| DNA polymerase III, epsilon subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 245

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 81/242 (33%), Positives = 125/242 (51%), Gaps = 16/242 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNMLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI+DEFL DKP+++ I  +F DF        + HNA FD+GF++ E + +N+D      
Sbjct: 66  HGISDEFLADKPTYADIVDDFLDFIRGAE--LVIHNATFDIGFMDYEFRLLNRDLPKTET 123

Query: 123 IIDTLS---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                    +AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M     
Sbjct: 124 FCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTG--G 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
           Q +  F    +   K E        +  +         + EL  H++ +  + K     +
Sbjct: 182 QTSLTFSMEGETQQKNENTETIQRIVRPQSALKVLYADEAELVAHEQRLDLIAKKGGSCL 241

Query: 237 WD 238
           W 
Sbjct: 242 WR 243


>gi|221134302|ref|ZP_03560607.1| DNA polymerase III, epsilon subunit [Glaciecola sp. HTCC2999]
          Length = 240

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 91/247 (36%), Positives = 130/247 (52%), Gaps = 22/247 (8%)

Query: 7   MRKIVFDIETTGLDSK-------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MR+IV D ETTG+  +         RIIEIG VEL+D   T   + V++ P  +   PEA
Sbjct: 1   MRQIVLDTETTGMSRESGEHFTHGHRIIEIGCVELVDRKLTGNHYHVYINPQ-QDIDPEA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           + +HGIT+EFL+DKP F  I   F DF +      + HNA FDVGF++ E        L 
Sbjct: 60  IAVHGITNEFLEDKPLFKEIAQGFIDFIDGAE--LVIHNAPFDVGFMDLEFALNPATALT 117

Query: 119 ---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                  ++DTL +A++  P  RN+L++LC+ YGI  SHR  HGALLD+ +L+DVY+ M 
Sbjct: 118 RTEKFCTVLDTLVLAKKMRPGQRNNLDALCREYGIDNSHRDLHGALLDAEILADVYLLMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG--- 232
            G   ++    T     F   +K  P  S LK         T +EL EH+  +  +    
Sbjct: 178 GGQETLSLETGTKSSSGFDNVEKLAPRTSALK-----IIHATADELTEHESRLDIVEQAS 232

Query: 233 KNAIWDR 239
            N ++ +
Sbjct: 233 GNCLYRQ 239


>gi|254491084|ref|ZP_05104265.1| DNA polymerase III, epsilon subunit [Methylophaga thiooxidans
           DMS010]
 gi|224463597|gb|EEF79865.1| DNA polymerase III, epsilon subunit [Methylophaga thiooxydans
           DMS010]
          Length = 245

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 87/245 (35%), Positives = 135/245 (55%), Gaps = 14/245 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M    + R+++ D ETTG+  + + RIIEIG VE+++   T +TF  ++ P  R     A
Sbjct: 1   MAELTQKRQVILDTETTGISTADDHRIIEIGCVEMVNRRLTGQTFHQYINPQ-RDIDAGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKD 116
           +++HGIT+EFL DKP F+ I  EF  F        + HNA FDVGFIN EL +     + 
Sbjct: 60  IEVHGITNEFLADKPLFTEIAEEFLSFIEGAE--LVIHNAPFDVGFINHELAKLDGETRR 117

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
               S ++DTL +AR KHP  +N+L++LCKRY +  ++R  HGALLD+ +L+DVY+ M  
Sbjct: 118 VETLSTVLDTLKMARDKHPGQKNNLDALCKRYDVNNANRELHGALLDAEILADVYLAMTG 177

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--- 233
           G   +    K +      + +     I+ LKR+  +  +   +EL  H   ++ + K   
Sbjct: 178 GQVSLTLMAKEDATPKKGDGQA---EITQLKRESLMVLKANDDELAAHQDMLEKVNKASD 234

Query: 234 -NAIW 237
              +W
Sbjct: 235 GQCVW 239


>gi|309972740|gb|ADO95941.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2846]
          Length = 255

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 82/255 (32%), Positives = 125/255 (49%), Gaps = 14/255 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N                        +N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ M 
Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTLGK 233
            G + +        +     ++KT   I             + T +EL  H + ++ + K
Sbjct: 178 GGQTNLFDEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKMMNK 237

Query: 234 ----NAIWDRYISSN 244
               N +W++   +N
Sbjct: 238 KSGNNCLWEKRFGNN 252


>gi|300715435|ref|YP_003740238.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661]
 gi|299061271|emb|CAX58380.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661]
          Length = 244

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 17/249 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   + V+L P+ R  
Sbjct: 1   MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNYHVYLKPD-RLV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---R 112
            PEA  +HGI DEFL DKP+F+ I   F ++ +      + HNA FD+GF++ E     R
Sbjct: 60  DPEAFGVHGIADEFLADKPTFADIADGFLEYIDGAE--LVIHNASFDIGFMDYEFAKLGR 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                    RI D+L++AR+  P  RN L++LC RY I  + R+ HGALLDS +L++V++
Sbjct: 118 NIPKTETFCRITDSLAMARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDSEILAEVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G + + F  + ++    ++      +         +    ++ E   H++ +  + 
Sbjct: 178 AMTGGQTLLKFSMEGDQQ---QQSNGDTIHRITRPASGLVVLSASEAENMAHEERLDLVM 234

Query: 233 KN---AIWD 238
           K     +W 
Sbjct: 235 KKGGSCLWR 243


>gi|254468292|ref|ZP_05081698.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13]
 gi|207087102|gb|EDZ64385.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13]
          Length = 219

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 111/227 (48%), Gaps = 10/227 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGLD  +  RIIEI AVE+++   TN  F V++ P  R+    A ++HG+
Sbjct: 1   MRQIFLDTETTGLDPAQGHRIIEIAAVEMINRQVTNNQFHVYINPE-REIDEAAQEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F SI  +F  F  +                +     +          I D
Sbjct: 60  TLEFLSDKPGFESISEKFISFIADSELIIHNAPFDIGFLNMELGRIKKGVVEDYAEVITD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L +AR   P  RN+L++LC+ YG+  S R+ HGALLDS LL++V+I M  G   +   F
Sbjct: 120 SLVMARELRPGQRNNLDALCRHYGVDNSERNLHGALLDSLLLAEVFIGMTRGQEALEIDF 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
              E      +K  +        +K      ++EEL+ H + ++   
Sbjct: 180 NNQEKLSIDFDKDIL--------NKLKVVSASQEELELHQEYLKKFK 218


>gi|145635316|ref|ZP_01791019.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA]
 gi|145267460|gb|EDK07461.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA]
          Length = 255

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 82/255 (32%), Positives = 125/255 (49%), Gaps = 14/255 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N                        +N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ M 
Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTLGK 233
            G + +        +     ++KT   I             + T +EL  H + ++ + K
Sbjct: 178 GGQTNLFDEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKMMNK 237

Query: 234 ----NAIWDRYISSN 244
               N +W++   +N
Sbjct: 238 KSGNNCLWEKRFGNN 252


>gi|145299712|ref|YP_001142553.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852484|gb|ABO90805.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 244

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 81/241 (33%), Positives = 121/241 (50%), Gaps = 13/241 (5%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+I+ D ETTG+++         RIIEIG VE+++   T   + V++ P+ R   PEA++
Sbjct: 8   RQIILDTETTGMNTAGGPIYLGHRIIEIGCVEVINRKLTGNHYHVYIKPD-RLVDPEAIQ 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGITD FL DKPSFS I ++F DF                          +N    D  
Sbjct: 67  VHGITDVFLADKPSFSQIANDFIDFIRGAELIAHNAPFDVSFMDYEFGKLGLNFKTRDIC 126

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            I DTL+IAR   P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G +++
Sbjct: 127 SITDTLAIARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTKL 186

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           N   +++E    +  + T        R      R   +    H+  +  + K     +W 
Sbjct: 187 NLATESSES---ERNQDTSIRRLESNRPPLKVVRAGADIEAVHEARLDLVQKKGGACLWR 243

Query: 239 R 239
           +
Sbjct: 244 Q 244


>gi|188580742|ref|YP_001924187.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001]
 gi|179344240|gb|ACB79652.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001]
          Length = 236

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 89/239 (37%), Positives = 137/239 (57%), Gaps = 10/239 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG D+K  DR+IEIG VEL+++ +T + +   + P  R  S  A  +HGI+
Sbjct: 3   REIVLDTETTGTDAKNGDRLIEIGCVELINHVQTGKFYHQLINPQ-RAVSEGAFAVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSRI 123
           D  L DKP F+ +   F  F  +     + HNA FDVGF+N E           +    +
Sbjct: 62  DAMLADKPVFADVVDAFVAFCGDAR--LVIHNAPFDVGFLNMEFARLGPAAPKAIPLEDV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +ARRKHP + N+L++LC RYG+  + R KHGALLD+ +L++VY++++  G Q + 
Sbjct: 120 VDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELLG-GKQTSL 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           G    E       +    +  +  R  P+ +R+T+ E   HD  +++LG NA+W  Y+ 
Sbjct: 179 GLSIAEPTEAIAIESATDSGPVGPR--PMRSRLTESERLRHDSFVESLGTNAVWREYLE 235


>gi|126463657|ref|YP_001044771.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105321|gb|ABN77999.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 229

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 93/235 (39%), Positives = 137/235 (58%), Gaps = 8/235 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  +  RI+EIGAVEL ++  T RT+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL+DKP F++I   F DF  E     + HNA FD+ F+N EL R     L P + +D
Sbjct: 60  GDEFLRDKPVFAAIGRAFLDFVGEAR--LVIHNAAFDMKFLNFELGRSGLPRLAPDQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR++ P +   L++LC+R+G+  S R KHGALLDS +L++VY++++  G Q +FG 
Sbjct: 118 TLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELIG-GRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            ++        +          R   L  RIT+EE   H   +  LG  AIW + 
Sbjct: 177 ASSAGARPGSPEG---EWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIWLKR 228


>gi|332559710|ref|ZP_08414032.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides WS8N]
 gi|332277422|gb|EGJ22737.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides WS8N]
          Length = 229

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 93/235 (39%), Positives = 137/235 (58%), Gaps = 8/235 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  +  RI+EIGAVEL ++  T RT+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL+DKP F++I   F DF  E     + HNA FD+ F+N EL R     L P + +D
Sbjct: 60  GDEFLRDKPVFAAIGRAFLDFVGEAR--LVIHNAVFDMKFLNFELGRAGLPRLAPDQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR++ P +   L++LC+R+G+  S R KHGALLDS +L++VY++++  G Q +FG 
Sbjct: 118 TLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELIG-GRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            ++        +          R   L  RIT+EE   H   +  LG  AIW + 
Sbjct: 177 ASSAGARPGSPEG---EWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIWLKR 228


>gi|152968805|ref|YP_001333914.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953654|gb|ABR75684.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 243

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 129/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E  ++N+       
Sbjct: 66  HGIADEFLLDKPTFADVADEFMDYIRGAE--LVIHNASFDIGFMDYEFSKLNRGIGKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +    +   E         +    +      + EEL  H+  +  + K     +
Sbjct: 184 SMAFSMEGESQQQAGE---MGIQRVVRAGSQLRVVYASDEELANHESRLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|77464814|ref|YP_354318.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Rhodobacter sphaeroides 2.4.1]
 gi|221640733|ref|YP_002526995.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131]
 gi|77389232|gb|ABA80417.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Rhodobacter sphaeroides 2.4.1]
 gi|221161514|gb|ACM02494.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides KD131]
          Length = 229

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 93/235 (39%), Positives = 137/235 (58%), Gaps = 8/235 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  +  RI+EIGAVEL ++  T RT+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL+DKP F++I   F DF  E     + HNA FD+ F+N EL R     L P + +D
Sbjct: 60  GDEFLRDKPVFAAIGRAFLDFVGEAR--LVIHNAAFDMKFLNFELGRAGLPRLAPDQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR++ P +   L++LC+R+G+  S R KHGALLDS +L++VY++++  G Q +FG 
Sbjct: 118 TLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELIG-GRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            ++        +          R   L  RIT+EE   H   +  LG  AIW + 
Sbjct: 177 ASSAGARPGSPEG---EWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIWLKR 228


>gi|146282599|ref|YP_001172752.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri A1501]
 gi|145570804|gb|ABP79910.1| DNA polymerase III, epsilon chain [Pseudomonas stutzeri A1501]
 gi|327480856|gb|AEA84166.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri DSM 4166]
          Length = 241

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 116/225 (51%), Gaps = 5/225 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+      RIIEIG VE++    T R + V+L P+ R+    A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVEVIGRRLTGRHYHVYLQPD-REVDEGAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRI 123
           T+EFL DKP F  I  EF++F  +        A +  F         Q+   +  D   +
Sbjct: 60  TNEFLVDKPRFRDIADEFFEFIKDAQLVIHNAAFDLGFINNEFALLGQQDRAEITDHCTV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR +HP  RN L++LCKRYG+  S R  HGALLD+ +L+DV++ M  G + ++ 
Sbjct: 120 LDTLLMARERHPGQRNSLDALCKRYGVDNSGRDLHGALLDAEILADVWLTMTGGQTNLSL 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
                     + +   +  +    R +    R + EEL  H   +
Sbjct: 180 AGDGESSDGGRPQPSPIRRLP-ADRPRTAVLRASDEELAAHMARM 223


>gi|296135837|ref|YP_003643079.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
 gi|295795959|gb|ADG30749.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
          Length = 239

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 81/238 (34%), Positives = 128/238 (53%), Gaps = 17/238 (7%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL+    DRIIE+  VEL +   T + +  +L P+ R + P+ALK+HG+T
Sbjct: 3   RQIVLDTETTGLNPASGDRIIEVAGVELFNRRLTGKHYHAYLNPD-RASHPDALKVHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +EFL DKP F  I  +  +F  +       HNA FD  F++AEL+R+N+        + T
Sbjct: 62  EEFLSDKPRFEQIADDLLEFVRDAEVI--IHNAPFDCAFLDAELERLNRPAFRQHVPLVT 119

Query: 127 LS--IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            +  +A+ + P   N+L++LCKR+GI  +HR+ HGALLD+ LL++VY+ +  G   +   
Sbjct: 120 DTLAMAKLQFPGKFNNLDALCKRFGIDNTHRTLHGALLDAELLAEVYLSLTRGQESLVID 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
            +T + +      +       L          + +E   H+  +Q L K     +IW 
Sbjct: 180 LETPQQQMSVASHR-------LDHFSLPVRAPSSDEQAAHEAFLQLLDKKSQGKSIWR 230


>gi|262044050|ref|ZP_06017130.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330005755|ref|ZP_08305367.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3]
 gi|259038622|gb|EEW39813.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328536123|gb|EGF62511.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3]
          Length = 246

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 129/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E  ++N+       
Sbjct: 69  HGIADEFLLDKPTFADVADEFMDYIRGAE--LVIHNASFDIGFMDYEFSKLNRGIGKTET 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +    +   E         +    +      + EEL  H+  +  + K     +
Sbjct: 187 SMAFSMEGESQQQAGE---MGIQRVVRAGSQLRVVYASDEELANHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|94311147|ref|YP_584357.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34]
 gi|93354999|gb|ABF09088.1| DNA polymerase III epsilon subunit [Cupriavidus metallidurans CH34]
          Length = 241

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 73/236 (30%), Positives = 113/236 (47%), Gaps = 11/236 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +  DR+IEIG VEL++   T R    ++ P  R    +A+ +HGI
Sbjct: 1   MRQIVLDTETTGLNHATGDRLIEIGCVELVNRRLTGRHLHFYVNPE-RDIHEDAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T +FL DKP F+ I ++  DF  +                +  +   +       S +ID
Sbjct: 60  TLDFLADKPKFAEIVNDVRDFVQDAELIIHNAPFDLGFLDMEFQRLDLPPFRQHASNVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  AR+  P  RN L++LC R G++ SHR+ HGALLD+ LL++VY+ M  G + +    
Sbjct: 120 TLREARQMFPGKRNSLDALCDRLGVSNSHRTLHGALLDAELLAEVYLAMTRGQNSLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237
                           + + L          ++ E+  H   ++ L K      +W
Sbjct: 180 LD-----GAATDGETRSTADLSAMTLPVLLASEAEISAHMGVLKELDKASGGKTVW 230


>gi|86146863|ref|ZP_01065182.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
 gi|85835315|gb|EAQ53454.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
          Length = 255

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 90/247 (36%), Positives = 138/247 (55%), Gaps = 21/247 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           +NK R +V D ETTG++++        RI+EIGAVE+++   T R F V++ P+ R    
Sbjct: 19  ENK-RIVVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRRLTGRHFHVYIKPD-RAIQE 76

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-- 115
           EA+ +HGITDEFL DKP +  I  EF DF        +AHNA FD GF++ E +++N   
Sbjct: 77  EAIGVHGITDEFLIDKPEYQDIHKEFLDFIKGAE--LVAHNAPFDTGFMDYEFEKLNPAI 134

Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M
Sbjct: 135 GKTDDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLM 194

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233
             G + + F          +E +      +   R      R T +E++ H   +  + K 
Sbjct: 195 TGGQTSLQFN------AGQQEGEGESIRRAESGRKSLKVLRATADEVEAHQSRLDLVEKS 248

Query: 234 -NAIWDR 239
            + +W +
Sbjct: 249 GSCLWRQ 255


>gi|260913733|ref|ZP_05920209.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella
           dagmatis ATCC 43325]
 gi|260632272|gb|EEX50447.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella
           dagmatis ATCC 43325]
          Length = 253

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 78/244 (31%), Positives = 125/244 (51%), Gaps = 13/244 (5%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ P+ R   P+A+K+
Sbjct: 9   RQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPD-RPVDPDAIKV 67

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGITDE L DKP+F+ I  +F ++           +              I  +  +   
Sbjct: 68  HGITDEMLADKPTFNEIAQQFIEYIQGAELLIHNASFDIGFMDYEFSKLNIGLNTSEICL 127

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I DTL +AR+ +P  RN L++LC R GI  S R+ HGALLD+ +L+DVY+ M  G + + 
Sbjct: 128 ITDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMTGGQTSL- 186

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
             F  +E        +     +++          T++EL  H + I+ L K    N +W+
Sbjct: 187 --FDESEPEIIVATTQEEVQSAVVFSQDLKKLMPTEDELQAHIEYIKLLNKKSKGNCLWE 244

Query: 239 RYIS 242
           + +S
Sbjct: 245 KRLS 248


>gi|284009180|emb|CBA76234.1| DNA polymerase III subunit epsilon [Arsenophonus nasoniae]
          Length = 254

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 86/243 (35%), Positives = 135/243 (55%), Gaps = 18/243 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P  R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGIHYEGHNIIEIGAVEVINRRLTGRHFHVYIKP-ARLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119
           HGI+DEFL+DKP+F+ I  EF DF        + HNA FD+GF++ E  ++N+D     +
Sbjct: 66  HGISDEFLQDKPTFAQIADEFLDFIRGAE--LVIHNAPFDIGFMDYEFSKLNRDIPPTAN 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR+  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M     
Sbjct: 124 FCQITDSLVLARKLFPGKRNNLDALCDRYHIDNSKRTLHGALLDAEILAEVYMAMTG--G 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----A 235
           Q +  F  + +   +  +  V  I   +          +EE+  H+  +  + K     +
Sbjct: 182 QTSLAFSVDSEPGSEVYRGDVKRIKR-QATGLSVVYANQEEIAAHEARLDLIEKKGGKIS 240

Query: 236 IWD 238
           +W 
Sbjct: 241 LWR 243


>gi|34581277|ref|ZP_00142757.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246]
 gi|229587086|ref|YP_002845587.1| DNA polymerase III subunit epsilon [Rickettsia africae ESF-5]
 gi|238650388|ref|YP_002916240.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str.
           Rustic]
 gi|28262662|gb|EAA26166.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246]
 gi|228022136|gb|ACP53844.1| DNA polymerase III epsilon chain [Rickettsia africae ESF-5]
 gi|238624486|gb|ACR47192.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str.
           Rustic]
          Length = 229

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 86/232 (37%), Positives = 134/232 (57%), Gaps = 11/232 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGLD +   RI+EIGA+E+++   T R F  ++ P  R    EA ++HGI+
Sbjct: 5   REIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGIS 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123
            EFLKDKP F +I  +F +F ++  ++ I HNA FD+ F+N E   L+R +   L+ +  
Sbjct: 64  GEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTDIKLLELANT 121

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY+++M  G Q  F
Sbjct: 122 IDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELMG-GRQSAF 180

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
                 D+           ++       +  + TKEEL +H + +  + K A
Sbjct: 181 KMV---DKSAVINNLATNQVNNKTEQTTIVIKPTKEELQKHKEFLSRILKTA 229


>gi|15893035|ref|NP_360749.1| DNA polymerase III subunit epsilon [Rickettsia conorii str. Malish
           7]
 gi|20137858|sp|Q92GL1|DPO3E_RICCN RecName: Full=DNA polymerase III subunit epsilon
 gi|15620236|gb|AAL03650.1| DNA polymerase III epsilon chain [Rickettsia conorii str. Malish 7]
          Length = 230

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 86/232 (37%), Positives = 134/232 (57%), Gaps = 11/232 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGLD +   RI+EIGA+E+++   T R F  ++ P  R    EA ++HGI+
Sbjct: 5   REIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGIS 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123
            EFLKDKP F +I  +F +F ++  ++ I HNA FD+ F+N E   L+R +   L+ +  
Sbjct: 64  GEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTDIKLLELANT 121

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY+++M  G Q  F
Sbjct: 122 IDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELMG-GRQSAF 180

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
                 D+           ++       +  + TKEEL +H + +  + K A
Sbjct: 181 KMV---DKSAVINNLATNQVNNKTEQTTIVIKPTKEELQKHKEFLSRILKTA 229


>gi|227112969|ref|ZP_03826625.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 245

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 127/242 (52%), Gaps = 16/242 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNMLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLD 119
           HGI+DEFL DKP+++ I  +F DF        + HNA FD+GF++ E +   R       
Sbjct: 66  HGISDEFLADKPTYADIVDDFLDFIRGAE--LVIHNATFDIGFMDYEFRLLNRDLPKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M     
Sbjct: 124 FCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTG--G 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
           Q +  F    +   K E        +  +         + EL  H++ +  + K     +
Sbjct: 182 QTSLTFSMEGETQQKSENTETIQRIVRPQSALTVLYADEAELLAHEQRLDLIAKKGGSCL 241

Query: 237 WD 238
           W 
Sbjct: 242 WR 243


>gi|146307095|ref|YP_001187560.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina ymp]
 gi|145575296|gb|ABP84828.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
          Length = 252

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 84/253 (33%), Positives = 128/253 (50%), Gaps = 9/253 (3%)

Query: 1   MIRKNKM-RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M   N + R +V D ETTG+      RIIEIG VELL    T R F V+L P+ R+    
Sbjct: 1   MTTDNTVNRYVVLDTETTGMPVTDGHRIIEIGCVELLGRRLTGRHFHVYLNPD-REIDEG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKD 116
           A+ +HGIT+E++ DKP F  +  EF++F           A +  F         Q    D
Sbjct: 60  AIAVHGITNEYVADKPRFRDVADEFYEFIKGAQLIIHNAAFDVGFINNEFALLGQSERAD 119

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             D   ++DTL +AR +HP  RN L++LCKRYG+  S+R  HGALLDS +L+DVY+ M  
Sbjct: 120 VSDYCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSNRELHGALLDSEILADVYLAMTG 179

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA- 235
           G + ++   +  +      ++ T        R +    R +++EL  H   +  + K+A 
Sbjct: 180 GQTHLSLAGEGADSDGSGRQQATPIRRLDAARPRTRVIRASEDELAAHLARLAAIEKSAG 239

Query: 236 ---IWDRYISSNQ 245
              +W +   + +
Sbjct: 240 GPSLWAQLEKAPE 252


>gi|157828957|ref|YP_001495199.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933682|ref|YP_001650471.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           Iowa]
 gi|157801438|gb|ABV76691.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165908769|gb|ABY73065.1| DNA polymerase III, epsilon chain [Rickettsia rickettsii str. Iowa]
          Length = 229

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 86/232 (37%), Positives = 134/232 (57%), Gaps = 11/232 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGLD +   RI+EIGA+E+++   T R F  ++ P  R    EA ++HGI+
Sbjct: 5   REIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGIS 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123
            EFLKDKP F +I  +F +F ++  ++ I HNA FD+ F+N E   L+R +   L+ +  
Sbjct: 64  GEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTDIKLLELANT 121

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY+++M  G Q  F
Sbjct: 122 IDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELMG-GRQSAF 180

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
                 D+           ++       +  + TKEEL +H + +  + K A
Sbjct: 181 KMV---DKSAVINNLATNQVNNKTEQTTIVIKPTKEELQKHKEFLSRILKTA 229


>gi|296101380|ref|YP_003611526.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055839|gb|ADF60577.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 243

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 80/242 (33%), Positives = 124/242 (51%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E  ++ +D    + 
Sbjct: 66  HGIADEFLLDKPTFAEVADEFLDYIKGAE--LVIHNASFDIGFMDYEFSKLQRDIPKTNT 123

Query: 123 IIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                     AR+  P  RN L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +    +   E         + +  +      + EEL  H+  +  + K     +
Sbjct: 184 SMKFSMENESQQTQGE---AGIQRVVRQASRLRVVLASDEELLNHESRLDLVQKKGGSCM 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|83944955|ref|ZP_00957321.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851737|gb|EAP89592.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii
           HTCC2633]
          Length = 236

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 86/231 (37%), Positives = 136/231 (58%), Gaps = 11/231 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+FD ETTGLD +  DR+ E+G VE++D   T +  ++ + P  R    E   + G T
Sbjct: 4   REIIFDTETTGLDPRGGDRVTELGCVEVIDLIPTGKDLRILINPE-RDIPAEVTAVTGHT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E LKD+P F+ I  +F DF  +  +  +AHNA FD+GFIN EL+R  K  +  +R IDT
Sbjct: 63  WEMLKDEPKFAEIVDQFLDFIED--STLVAHNAMFDMGFINMELERCGKPIIPKARFIDT 120

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            +IAR K P +   L++LCKR+ +++  R+KHGAL+DS+LL++VY++ + GG + +  F 
Sbjct: 121 AAIAREKFPGAPASLDALCKRFDVSLDSRTKHGALIDSYLLAEVYLE-LNGGREQSLSFT 179

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            ++         TV   +   R K L + +T+ E   H + I  +  + +W
Sbjct: 180 GSDG-----GDGTVVYPTRAARPKSLPSLVTERERAAHAEFISEMD-DPLW 224


>gi|163850914|ref|YP_001638957.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens
           PA1]
 gi|163662519|gb|ABY29886.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens
           PA1]
          Length = 241

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 91/246 (36%), Positives = 140/246 (56%), Gaps = 11/246 (4%)

Query: 2   IRKNKM-RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           +   KM R+IV D ETTG +++  DR+IEIG VEL+++ +T  TF   + P  R  S  A
Sbjct: 1   MESQKMLREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKD 116
             +HGI+D  L DKP F+ +   F +F  +     + HNA FDVGF+N E          
Sbjct: 60  FAVHGISDAMLADKPVFAEVVDAFLEFCGDAR--LVIHNAPFDVGFLNMEFARLGPAAPK 117

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +    ++DTL +ARRKHP + N+L++LC RYG+  + R KHGALLD+ +L++VY++++ 
Sbjct: 118 AIALEDVVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELLG 177

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236
            G Q + G    E            +  +  R  P+ +R+T+ E   HD  +++LG NA+
Sbjct: 178 -GKQTSLGLSIAEPAETVALGALTDSGPVGPR--PIRSRLTEGERLRHDSFVESLGTNAV 234

Query: 237 WDRYIS 242
           W  Y+ 
Sbjct: 235 WREYME 240


>gi|32035046|ref|ZP_00135112.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126208748|ref|YP_001053973.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           L20]
 gi|126097540|gb|ABN74368.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 257

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 86/251 (34%), Positives = 135/251 (53%), Gaps = 16/251 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKP F+ +  EF +F        I HNA FDV F++ E   +  
Sbjct: 60  DEEAIKVHGITNEFLQDKPVFAEVADEFIEFIKGAE--LIIHNAPFDVAFMDQEFSYLGN 117

Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P        + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G   +  G +             +  I+  +    +   +++EE   H++ ++ + 
Sbjct: 178 MMTGGQLAL-LGEEDATATHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236

Query: 233 K----NAIWDR 239
           K    N IW R
Sbjct: 237 KKSKGNCIWMR 247


>gi|238893208|ref|YP_002917942.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238545524|dbj|BAH61875.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 246

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 129/242 (53%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E  ++N+       
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNASFDIGFMDYEFSKLNRGIGKTET 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +    +   E         +    +      + EEL  H+  +  + K     +
Sbjct: 187 SMAFSMEGESQQQAGE---MGIQRVVRAGSQLRVVYASDEELANHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|73541877|ref|YP_296397.1| DNA polymerase III subunit epsilon [Ralstonia eutropha JMP134]
 gi|72119290|gb|AAZ61553.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
          Length = 240

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/236 (31%), Positives = 113/236 (47%), Gaps = 11/236 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR+IEIG VEL++   T R    ++ P  R     A+ +HGI
Sbjct: 4   MRQIVLDTETTGLNAATGDRLIEIGCVELVNRRLTGRHLHFYVNPE-RDIDEGAIAVHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ + +E  DF  +                +   L  +         +ID
Sbjct: 63  TVEFLADKPKFAEVVNEVRDFVQDAELIIHNAQFDLGFLDMEFRLLGLPPFREHVGSVID 122

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  AR+  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G + +    
Sbjct: 123 TLLEARQMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLVIDM 182

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237
               +       +     S L          ++ E+ EH   ++ L K      +W
Sbjct: 183 LDGAEAADGSVAE-----SDLSHIVLPVLYASEAEVSEHLAVLKQLDKASGGKTVW 233


>gi|91775831|ref|YP_545587.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
 gi|91709818|gb|ABE49746.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
          Length = 231

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 79/234 (33%), Positives = 115/234 (49%), Gaps = 10/234 (4%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  ++  RIIEI  VEL++   TN  F V+L P+ R+    A ++HGI
Sbjct: 3   MRQIFLDTETTGLYHAQGHRIIEIAGVELVNRRLTNNHFHVYLNPD-REIDEAAQEVHGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL+DKP F+ I  EF  F +  +                               IID
Sbjct: 62  TLEFLQDKPRFADIVDEFLQFVSGADLIIHNAPFDIGFLNAELNRVGRQNIEHSVLEIID 121

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +A+   P  RN+L++LC+ YGI  S R+ HGALLD+ LL+DVY+ M  G   +    
Sbjct: 122 TLKMAKEMRPGQRNNLDALCRHYGIDNSSRTLHGALLDAELLADVYMAMTRGQESLMIDM 181

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIW 237
                   +   +    I L +    L    ++ EL  H++ +Q + K+   +W
Sbjct: 182 ------LDQGPIEGSGEIRLTRSKPLLVLTASEAELAAHEEYLQAMSKSGACVW 229


>gi|171463544|ref|YP_001797657.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193082|gb|ACB44043.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 236

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 78/239 (32%), Positives = 126/239 (52%), Gaps = 16/239 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+    DRIIEIG +E++    T+RTF  ++ P  R     A  +HG+
Sbjct: 1   MRQVILDTETTGLNPATGDRIIEIGCIEMVGRRLTDRTFHYYINPE-RDIDAGAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           + EFL DKP F++I  +  +F +      + HNA FD+GF++ E   + + P     S+I
Sbjct: 60  SREFLSDKPIFANIVEQLIEFVDGAE--ILIHNAAFDLGFLDNEFALLKRPPFRNLASKI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL  AR+  P  RN L++LC+R+ I+  HR+ HGALLD+ LL++VY+ M  G   ++ 
Sbjct: 118 TDTLLDARQMFPGKRNSLDALCERFSISNKHRTLHGALLDAQLLAEVYVAMTRGQEDLSI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
                               +            + E+L+ H+K +  +     K+++W 
Sbjct: 178 DLIDYTVGADSSVHTKALPTN------LKLLSASNEDLESHEKILAEIAKASKKDSVWS 230


>gi|301168790|emb|CBW28381.1| DNA polymerase III epsilon subunit [Haemophilus influenzae 10810]
          Length = 255

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 83/255 (32%), Positives = 127/255 (49%), Gaps = 14/255 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N                        +N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D   + DTL +AR+ +P  RN+L++LC+R GI  S R+ HGALLD+ +L+DVY+ M 
Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCERLGIDNSKRTLHGALLDAEILADVYLMMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTLGK 233
            G + +        +     ++KT   I             + T +EL  H + ++ + K
Sbjct: 178 GGQTNLFDEESVESEVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMNK 237

Query: 234 ----NAIWDRYISSN 244
               N +WD+   +N
Sbjct: 238 KSGNNCLWDKRFGNN 252


>gi|162148736|ref|YP_001603197.1| DNA polymerase III epsilon subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545498|ref|YP_002277727.1| DNA polymerase III subunit epsilon [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787313|emb|CAP56907.1| putative DNA polymerase III epsilon subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533175|gb|ACI53112.1| DNA polymerase III, epsilon subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 226

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 89/232 (38%), Positives = 128/232 (55%), Gaps = 10/232 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I+FD ETTGLD  + DR+IEI A+EL+    T R F V + P+ R    EA ++HG T
Sbjct: 3   RAILFDTETTGLDPARGDRVIEIAALELVGDLPTGRHFHVLIHPD-RDIPEEASRVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+ KP F  I  +F  F  + +   IAHNA+FD GF+NAEL+R  +  L   R++DT
Sbjct: 62  LADLEGKPRFHEIADDFLAFIGQDD--LIAHNARFDFGFLNAELKRAERPALSLDRMVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L IAR ++P   N L++LC+R+ I +S R+ H ALLD  LL++VY+++M  G Q   G  
Sbjct: 120 LDIARDRYPGLPNSLDALCRRFSIDLSARTTHNALLDCRLLAEVYLELMG-GRQRGLGLT 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
             +    +          L     P     T++EL  H + +  + K  IW 
Sbjct: 179 VQDGGGAQ----VSYAYDLAGARTPRLIVPTEQELAAHGRFLDKI-KEPIWS 225


>gi|194364623|ref|YP_002027233.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
           R551-3]
 gi|194347427|gb|ACF50550.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 243

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 89/239 (37%), Positives = 126/239 (52%), Gaps = 13/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +RI+EIG VEL     T   +  ++ P+  +    A ++ G+
Sbjct: 1   MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDC-EFEQGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           T EFL DKP F+ I  EF  F +      I HNA FD+GF++ EL           D   
Sbjct: 60  TLEFLDDKPDFAQIADEFLAFIDGAE--LIIHNAAFDLGFLDNELSLLGPQYGKITDRCT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDTL +AR + P  RN L++LC+R G+  SHR+ HG LLD+ +L DVYI +  G  +I 
Sbjct: 118 VIDTLVMARERFPGQRNSLDALCRRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           FG   +E        +      LL R +      T  EL+ H   ++ L K    A+WD
Sbjct: 178 FGLGDDEAGAAGAALQAFDTSKLLPRPR---VVATPSELEAHTARLERLRKKAGHALWD 233


>gi|295096912|emb|CBK86002.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 246

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 80/242 (33%), Positives = 126/242 (52%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL +KP+F+ +  EF D+        + HNA FD+GF++ E  ++N+D    + 
Sbjct: 69  HGIADEFLLNKPTFADVADEFLDYIRGAE--LVIHNASFDIGFMDYEFSKLNRDIPKTNT 126

Query: 123 IIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                     AR+  P  RN L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLTMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +    +   E         + + ++      + EEL  H+  +  + K     +
Sbjct: 187 SMKFSMENESQQTRDEGGIQRI---VRQANRLRVVLASDEELMNHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|229845439|ref|ZP_04465569.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1]
 gi|229811635|gb|EEP47334.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1]
          Length = 256

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 128/256 (50%), Gaps = 15/256 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  I  +F D+ N                        +N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKEIAQDFLDYINGAELLIHNAPFDVGFMDYEFCKLNLNV 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ M 
Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177

Query: 176 VGGSQINFGFKTNEDRFF---KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            G + +    ++ E       +E+       ++         + T +EL  H + ++ + 
Sbjct: 178 GGQTNLFDAEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTDDELQAHLELLKMIN 237

Query: 233 K----NAIWDRYISSN 244
           K    N +WD+   ++
Sbjct: 238 KKSGNNCLWDKRFGND 253


>gi|307545281|ref|YP_003897760.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
 gi|307217305|emb|CBV42575.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581]
          Length = 255

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 85/245 (34%), Positives = 130/245 (53%), Gaps = 16/245 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTG+D  +  R+IEIGAVE+++   T  T+  ++ P  R    EA+++HGI
Sbjct: 1   MRQIILDTETTGIDPREGHRLIEIGAVEMVNRRLTGNTYHQYINPE-RDIEAEAVEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--------DP 117
           T+E + D+P F+ +   FW F        + HNA FDVGFI+ E  R+N+          
Sbjct: 60  TNEKVADEPVFAEVADAFWAFIKGAE--LVIHNAPFDVGFIDHEFARLNEARGGPVLGPV 117

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +  RI+DTL +AR KHP  RN+L++LCKRY I   HR  HGALLD+ +L+DVY+ M  G
Sbjct: 118 AEHCRILDTLQLARDKHPGQRNNLDALCKRYEIQNGHRVLHGALLDAEILADVYLAMTGG 177

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGK--- 233
            + ++      +D    +    +    L     +    +  + E   H   +  + +   
Sbjct: 178 QTALSLDASAGDDTEQADNGGGLRIRRLSLSPGQLRVRQPDEAEWQAHRDKLAGIREASG 237

Query: 234 NAIWD 238
              WD
Sbjct: 238 ECRWD 242


>gi|148979853|ref|ZP_01815731.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
 gi|145961545|gb|EDK26846.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
          Length = 255

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 89/247 (36%), Positives = 133/247 (53%), Gaps = 21/247 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           +NK R +V D ETTG++++        RI+EIGAVE+++   T R F V++ P+ R    
Sbjct: 19  ENK-RIVVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYIKPD-RAIQE 76

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RIN 114
           EA+ +HGITDEFL DKP +  I  EF DF        +AHNA FD GF++ E +      
Sbjct: 77  EAIGVHGITDEFLVDKPEYQDIHKEFLDFIKGAE--LVAHNAPFDTGFMDYEFEKLDPTI 134

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               D  ++ DTL +A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M
Sbjct: 135 GKTDDYCKVTDTLDMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLM 194

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233
             G + + F          +E            R      R T +E++ H   +  + K 
Sbjct: 195 TGGQTSLQFN------AGQQEGGVESIRRVESGRKSLKVLRATADEVEAHQSRLDLVEKS 248

Query: 234 -NAIWDR 239
            + +W +
Sbjct: 249 GSCLWRQ 255


>gi|322515310|ref|ZP_08068307.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus
           ureae ATCC 25976]
 gi|322118686|gb|EFX90898.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus
           ureae ATCC 25976]
          Length = 257

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 86/251 (34%), Positives = 136/251 (54%), Gaps = 16/251 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKP F+ +  EF +F        I HNA FDV F++ E   +  
Sbjct: 60  EEEAIKVHGITNEFLQDKPVFAEVADEFIEFIKGAE--LIIHNAPFDVAFMDQEFSYLEN 117

Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P        + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEICSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G   +  G +             +  I+  +    +  ++++EE   H++ ++ + 
Sbjct: 178 IMTGGQLAL-LGEEDASTNHENITDLGLGTITKFETSGLIVLQLSEEEQAAHEEYLKLID 236

Query: 233 K----NAIWDR 239
           K    N IW R
Sbjct: 237 KKSKGNCIWMR 247


>gi|260581298|ref|ZP_05849115.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW]
 gi|260092047|gb|EEW75993.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW]
          Length = 256

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 129/256 (50%), Gaps = 15/256 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N                        +N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ M 
Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177

Query: 176 VGGSQINFGFKTNED---RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            G + +    ++ E    R  +E+       ++         + T +EL  H + ++ + 
Sbjct: 178 GGQTNLFDEEESVESGVIRVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMN 237

Query: 233 K----NAIWDRYISSN 244
           K    N +WD+   +N
Sbjct: 238 KKSGNNCLWDKRFGNN 253


>gi|148827278|ref|YP_001292031.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG]
 gi|148718520|gb|ABQ99647.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG]
          Length = 256

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 129/256 (50%), Gaps = 15/256 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N                        +N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D   + DTL +AR+ +P  R++L++LC+R GI  S R+ HGALLD+ +L+DVY+ M 
Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRSNLDALCERLGIDNSKRTLHGALLDAEILADVYLMMT 177

Query: 176 VGGSQINFGFKTNEDRFF---KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            G + +    ++ E       +E+       ++         + T +EL  H + ++ + 
Sbjct: 178 GGQTNLFDEEESVESGVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMN 237

Query: 233 K----NAIWDRYISSN 244
           K    N +WD+   +N
Sbjct: 238 KKSGNNCLWDKRFGNN 253


>gi|327392834|dbj|BAK10256.1| DNA polymerase III epsilon subunit DnaQ [Pantoea ananatis AJ13355]
          Length = 243

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 89/249 (35%), Positives = 136/249 (54%), Gaps = 18/249 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F ++L P+ R  
Sbjct: 1   MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLV 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QR 112
            PEA  +HGI DEFL DKP+FS I  EF D+        + HNA FD+GF++ E    QR
Sbjct: 59  DPEAFGVHGIADEFLLDKPTFSDIADEFLDYIRGAE--LVIHNASFDIGFMDYEFGKLQR 116

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             +      +I D+L++ARR  P  RN L++LC RY I  S R+ HGALLD+ +L++V +
Sbjct: 117 GIEKTETFCKITDSLAMARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAEILAEVLL 176

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M     Q +  F + E+R  +++ + +  I+            + EE+++H+  +  + 
Sbjct: 177 TMTG--GQTSLSFSSEEERARQQQSEGIQRIAR-PNSGLRVVTASDEEVNQHESRLDLIM 233

Query: 233 KN---AIWD 238
           K     +W 
Sbjct: 234 KKGGSCLWR 242


>gi|84389766|ref|ZP_00991318.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
 gi|84376867|gb|EAP93741.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
          Length = 255

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 92/247 (37%), Positives = 138/247 (55%), Gaps = 21/247 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           +NK R IV D ETTG++++        RI+EIGAVE+++   T R F V++ P+ R    
Sbjct: 19  ENK-RIIVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRRLTGRHFHVYIKPD-RAIQE 76

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-- 115
           EA+ +HGITDEFL DKP +  I  EF DF        +AHNA FD GF++ E +++N   
Sbjct: 77  EAIGVHGITDEFLIDKPEYQDIHKEFLDFIKGAE--LVAHNAPFDTGFMDYEFEKLNSAI 134

Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M
Sbjct: 135 GKTDDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLM 194

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233
             G + + F          KE +      +   R      R T +E++ H   +  + K 
Sbjct: 195 TGGQTSLQFN------AGQKEGEGESIRRAESGRKSLKVLRATADEVEAHQSRLDLVEKS 248

Query: 234 -NAIWDR 239
            + +W +
Sbjct: 249 GSCLWRQ 255


>gi|218710290|ref|YP_002417911.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32]
 gi|218323309|emb|CAV19486.1| DNA polymerase III, epsilon subunit [Vibrio splendidus LGP32]
          Length = 255

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 91/247 (36%), Positives = 138/247 (55%), Gaps = 21/247 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           +NK R IV D ETTG++++        RI+EIGAVE+++   T R F V++ P+ R    
Sbjct: 19  ENK-RIIVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYIKPD-RAIQE 76

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-- 115
           EA+ +HGITDEFL DKP +  I  EF DF        +AHNA FD GF++ E +++N   
Sbjct: 77  EAIGVHGITDEFLIDKPEYQDIHKEFLDFIKGAE--LVAHNAPFDTGFMDYEFEKLNPAI 134

Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M
Sbjct: 135 GKTDDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLM 194

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233
             G + + F          +E +      +   R      R T +E++ H   +  + K 
Sbjct: 195 TGGQTSLQFN------AGQQEGEGESIRRAESGRKSLKVLRATADEVEAHQSRLDLVEKS 248

Query: 234 -NAIWDR 239
            + +W +
Sbjct: 249 GSCLWRQ 255


>gi|51473901|ref|YP_067658.1| DNA polymerase III subunit epsilon [Rickettsia typhi str.
           Wilmington]
 gi|81826284|sp|Q68W16|DPO3E_RICTY RecName: Full=DNA polymerase III subunit epsilon
 gi|51460213|gb|AAU04176.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 229

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 89/228 (39%), Positives = 131/228 (57%), Gaps = 11/228 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGLD +   RIIEIGA+E+++   T + F  ++ P  R    EA K+HGI+
Sbjct: 5   REIILDTETTGLDPQQGHRIIEIGAIEMVNKVLTGKHFHCYINPE-RDMPFEAYKIHGIS 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123
            EFLKDKP F +I ++F  F  +  +  I HNA FD+ F+N E   L+R     L+ +  
Sbjct: 64  GEFLKDKPLFHTIANDFLKFIAD--STLIIHNAPFDIKFLNHELSLLKRTEIKFLELTNT 121

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +AR   P +R  L++LCKR+ +  S R  HGAL D+ LL++VY+ +   G Q  F
Sbjct: 122 IDTLVMARSMFPGARYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVALTG-GRQSTF 180

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
                 D+  +    TV  I + K  + +  + TKEEL +H + I  +
Sbjct: 181 KMI---DKPNEINNLTVKCIEVQKIKRSIVVKPTKEELQKHKEFIDKI 225


>gi|190150601|ref|YP_001969126.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303252089|ref|ZP_07338258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|189915732|gb|ACE61984.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302649071|gb|EFL79258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 257

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 86/251 (34%), Positives = 135/251 (53%), Gaps = 16/251 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKP F+ +  EF +F        I HNA FDV F++ E   +  
Sbjct: 60  DEEAIKVHGITNEFLQDKPVFAEVADEFIEFIKGAE--LIIHNAPFDVAFMDQEFSYLEN 117

Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P        + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G   +  G +             +  I+  +    +   +++EE   H++ ++ + 
Sbjct: 178 MMTGGQLAL-LGEEDATATHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236

Query: 233 K----NAIWDR 239
           K    N IW R
Sbjct: 237 KKSKGNCIWMR 247


>gi|58040389|ref|YP_192353.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H]
 gi|58002803|gb|AAW61697.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H]
          Length = 228

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 93/234 (39%), Positives = 127/234 (54%), Gaps = 11/234 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I+FD ETTG D    DRIIEI A+EL+D   T   + V + P  R    EA K+HG  
Sbjct: 3   RSILFDTETTGFDPDMGDRIIEIAALELIDDLPTGEAYHVLIHPE-RDIPAEATKVHGFR 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
            E L+ KP FS +   F +F  +      AHNA+FD  F+NAEL+   ++PLD  SR ID
Sbjct: 62  IEDLEGKPIFSEVADGFLEFIGDSPMI--AHNARFDFKFVNAELKACGREPLDYASRAID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +AR+K+P     L++LC+R+GI +S R  H ALLD  LL++VY+++M  G Q   G 
Sbjct: 120 TVEMARKKYPGLPASLDALCRRFGIDLSQRGTHNALLDCKLLAEVYVELMG-GRQRGLGL 178

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                     E        L  R        T EEL  H+  + T+ K+A+W R
Sbjct: 179 AGPSRSRSMTEGINA----LANRKPRKMAPPTAEELQAHEAFVSTI-KDAVWLR 227


>gi|58584800|ref|YP_198373.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58419116|gb|AAW71131.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 231

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 90/240 (37%), Positives = 138/240 (57%), Gaps = 11/240 (4%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +NK+R+IV D ETTGLD +   RIIEIG VEL++   T + F  +L P  R     + K+
Sbjct: 2   ENKLREIVLDTETTGLDIESGHRIIEIGCVELINRIPTGKVFHKYLNPE-RDIPYHSFKI 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI++EFL+DKP FS +  EF DF +      I HNA+FD+ F+N EL ++N   +   R
Sbjct: 61  HGISEEFLEDKPLFSDVVFEFLDFISG--DILIIHNAEFDIKFLNMELGKLNARLISSDR 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+K   S   L++LCKR+ I++ +R  HGAL D+ LL+ VY+++  G     
Sbjct: 119 VLDTLPLARKKFVGSPASLSALCKRFDISLENRELHGALTDAGLLAKVYVELTGGLQTFL 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           F  +  +D      +  V N++  +         + EE++EH K +  +  N +W   I 
Sbjct: 179 FDNECKQDHNSAFIQHKVRNLTCRE------HSPSNEEINEHRKLLGKID-NPLWKERIE 231


>gi|121997071|ref|YP_001001858.1| DNA polymerase III subunit epsilon [Halorhodospira halophila SL1]
 gi|121588476|gb|ABM61056.1| DNA polymerase III, epsilon subunit [Halorhodospira halophila SL1]
          Length = 243

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 88/240 (36%), Positives = 127/240 (52%), Gaps = 16/240 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTG+D  +  RIIEIG VEL+    T   F  +L P+ R     A  +HG+
Sbjct: 1   MRQILLDTETTGMDPTEGHRIIEIGCVELVRRRLTGNNFHEYLNPD-RAVDEGAENVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122
           ++ FL DKP F+ I   F D+  +     I HNA FDVGFI+AEL R+        D   
Sbjct: 60  SNRFLADKPRFADIARRFVDYVQDAE--LIIHNAPFDVGFIDAELARLGPAWGQLEDYCT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I D+L +ARR HP  R  L++LCKRY +  S R  HGALLDS LL++VY+ M  G  +++
Sbjct: 118 ITDSLQMARRMHPGQRCSLDALCKRYSVDGSRRELHGALLDSELLAEVYLAMTGGQGKLS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
              +  E    +  ++         R +       + E + H++ +Q +    G  A+W 
Sbjct: 178 LEGEGLEPGGAEPVQRLSAE-----RPRLRVPEPGELEREAHEQLLQRIEATCGGPALWR 232


>gi|220921281|ref|YP_002496582.1| DNA polymerase III subunit epsilon [Methylobacterium nodulans ORS
           2060]
 gi|219945887|gb|ACL56279.1| DNA polymerase III, epsilon subunit [Methylobacterium nodulans ORS
           2060]
          Length = 238

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 98/238 (41%), Positives = 142/238 (59%), Gaps = 10/238 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R+IV D ETTG D+K DR+IEIG +ELL++  T R F  ++ P  R  S  A  +HG++D
Sbjct: 3   REIVLDTETTGTDAKTDRLIEIGGIELLNHIPTGREFHRYINPQ-RAVSQGAFAVHGLSD 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSRII 124
            FL DKP F+ I  +F DF  +       HNA FDVGF+NAE  R       P++ S ++
Sbjct: 62  AFLADKPLFAEILPDFLDFCGDATFV--IHNAAFDVGFLNAEYARLGETAPPPIELSAVV 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++ARRKHP++ N+L++LC RYGI  S R+KHGALLD+ +L++VYI+++  G Q + G
Sbjct: 120 DTLALARRKHPNAANNLDALCARYGIDNSRRTKHGALLDAQILAEVYIELLG-GKQTSLG 178

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                    +  ++  P        + + +R+T  E   H     +LG NA+W  YI 
Sbjct: 179 LTLEAASIVRVTQEAGPVAHG---PRSVRSRLTDAERTAHAAFTASLGANAVWRDYIG 233


>gi|288549963|ref|ZP_05968783.2| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288316782|gb|EFC55720.1| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 246

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 81/242 (33%), Positives = 126/242 (52%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF ++        + HNA FD+GF++ E  ++N+D    + 
Sbjct: 69  HGIADEFLLDKPTFADVADEFLEYIKGAE--LVIHNASFDIGFMDYEFSKLNRDIPKTNT 126

Query: 123 IIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                     ARR  P  RN L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKVTDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLTMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +    +   E         + +  +      + EEL +H+  +  + K     +
Sbjct: 187 SMKFSMENESQQSQGE---AGIQRLVRQASRLRVVHASDEELLKHESRLDLVQKKGGSCM 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|15601971|ref|NP_245043.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|31563219|sp|Q9CPE0|DPO3E_PASMU RecName: Full=DNA polymerase III subunit epsilon
 gi|12720318|gb|AAK02190.1| DnaQ [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 253

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 76/244 (31%), Positives = 120/244 (49%), Gaps = 13/244 (5%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ PN R   P+A+K+
Sbjct: 9   RQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPN-RPVDPDAIKV 67

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGITDE L DKP F+ +  +F D+                      +   +N +      
Sbjct: 68  HGITDEMLADKPMFNEVAQQFIDYIQGAELLIHNAPFDVGFMDYEFKKLNLNINTDAICM 127

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL +AR+ +P  RN L++LC R GI  S R+ HGALLD+ +L+DVY+ M  G + + 
Sbjct: 128 VTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMTGGQTSL- 186

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
             F  NE        +     ++         +   +EL  H   +  L K    N +W+
Sbjct: 187 --FDENEPEIAVVAVQEQIQSAVAFSQDLKRLQPNADELQAHLDYLLLLNKKSKGNCLWE 244

Query: 239 RYIS 242
           + ++
Sbjct: 245 KRLA 248


>gi|206577790|ref|YP_002240302.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342]
 gi|290509928|ref|ZP_06549298.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55]
 gi|206566848|gb|ACI08624.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342]
 gi|289776644|gb|EFD84642.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55]
          Length = 243

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 126/242 (52%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E     R       
Sbjct: 66  HGIADEFLLDKPTFADVADEFMDYIRGAE--LVIHNASFDIGFMDYEFGKLNRGIGKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +    +   E         +    +      + EEL  H+  +  + K     +
Sbjct: 184 SMAFSMEGESQQQAGE---MGIQRVVRAASQLRVVYASDEELVNHESRLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|290476066|ref|YP_003468963.1| DNA polymerase III subunit epsilon [Xenorhabdus bovienii SS-2004]
 gi|289175396|emb|CBJ82199.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Xenorhabdus bovienii SS-2004]
          Length = 249

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F +++ P  R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRHFHLYIKPE-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+DEFL+DKP+F+ I  EF +F        I HNA FD+GF++ E +++N+D      
Sbjct: 66  HGISDEFLQDKPTFADIADEFIEFIRGAE--LIIHNATFDIGFMDYEFRKLNRDIPPTAD 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +AR+  P  RN+LN+LC RY I  S R+ HGALLD+ +LSDVY+ M  G +
Sbjct: 124 FCTITDSLVLARQLFPGKRNNLNALCDRYQIDNSKRTLHGALLDAEILSDVYLTMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +       +  +                   + EEL +H+  +  + K     +
Sbjct: 184 SLTFSMEGEISGGAQMAEIQKITRPQT---GLKVIYASDEELLQHESRLDLVEKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|239947177|ref|ZP_04698930.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921453|gb|EER21477.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 240

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 85/228 (37%), Positives = 130/228 (57%), Gaps = 11/228 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGLD +   RI+EIGA+E+++   T R F  ++ P  R    EA ++HGI+
Sbjct: 16  REIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRMHGIS 74

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123
            EFLKDKP F +I  +F +F  +  ++ I HNA FD+ F+N E   L+R     L+ +  
Sbjct: 75  GEFLKDKPLFHTIADDFLEFIAD--SKLIIHNAPFDIKFLNHELSLLKRAEIKLLELANT 132

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY+++M  G Q  F
Sbjct: 133 IDTLVMARSMFPGSKYNLDALCKRFKVDNSSRQLHGALKDAALLAEVYVELMG-GRQSAF 191

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
                 D+           ++       +  + TKEEL +H + I  +
Sbjct: 192 KMV---DKSAGINNLVTNQVNNKTEQATIVIKPTKEELQKHKEFINKI 236


>gi|307246199|ref|ZP_07528280.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255179|ref|ZP_07536997.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259617|ref|ZP_07541341.1| hypothetical protein appser11_14150 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306852808|gb|EFM85032.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862052|gb|EFM94028.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866262|gb|EFM98126.1| hypothetical protein appser11_14150 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 257

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 86/251 (34%), Positives = 135/251 (53%), Gaps = 16/251 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKP F+ +  EF +F        I HNA FDV F++ E   +  
Sbjct: 60  EEEAIKVHGITNEFLQDKPVFAEVADEFIEFIKGAE--LIIHNAPFDVAFMDQEFSYLEN 117

Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P        + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G   +  G +             +  I+  +    +   +++EE   H++ ++ + 
Sbjct: 178 MMTGGQLAL-LGEEDATSNHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236

Query: 233 K----NAIWDR 239
           K    N IW R
Sbjct: 237 KKSKGNCIWMR 247


>gi|288937007|ref|YP_003441066.1| DNA polymerase III subunit epsilon [Klebsiella variicola At-22]
 gi|288891716|gb|ADC60034.1| DNA polymerase III, epsilon subunit [Klebsiella variicola At-22]
          Length = 246

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 126/242 (52%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E     R       
Sbjct: 69  HGIADEFLLDKPTFADVADEFMDYIRGAE--LVIHNASFDIGFMDYEFGKLNRGIGKTET 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +    +   E         +    +      + EEL  H+  +  + K     +
Sbjct: 187 SMAFSMEGESQQQAGE---MGIQRVVRAASQLRVVYASDEELVNHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|163732957|ref|ZP_02140401.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149]
 gi|161393492|gb|EDQ17817.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149]
          Length = 228

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 95/234 (40%), Positives = 147/234 (62%), Gaps = 8/234 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL+ +  T +T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGKTYHQYINPE-RMMPDEAFQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL+DKP F+ +   F DF  +  A+ + HNA FD+ F+NAEL+ +N   +   + ID
Sbjct: 60  GDEFLRDKPKFAEVGQAFLDFIGD--AKLVIHNAAFDIKFLNAELKWMNLPQIPWEQAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR++ P S   L++LC+R+GI  + R+ HGALLDS +L++VY++++  G Q +FG 
Sbjct: 118 TLAIARKRFPGSPASLDALCRRFGIDNASRTLHGALLDSEILAEVYLELIG-GRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
               +   K    T  + +   R  PL +R+T+EE   H + +  LG +A+W +
Sbjct: 177 S---NIPQKSAGDTSVDWTPRPRPTPLPSRMTEEEAAAHAEFVAKLGDDAVWLK 227


>gi|254429095|ref|ZP_05042802.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881]
 gi|196195264|gb|EDX90223.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881]
          Length = 246

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 85/239 (35%), Positives = 132/239 (55%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTGL+     R+IEIG VE+ +   T     ++L P  R+    AL +HGI
Sbjct: 1   MRQVVLDTETTGLEPNDGHRVIEIGCVEMENRRLTGNNLHLYLNPE-REIDAGALAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSR 122
           + EFL DKP+F  +  EF  F +      + HNA FDVGF+N EL+R             
Sbjct: 60  STEFLADKPTFDKVVDEFLAFVDGAE--LVIHNAPFDVGFLNHELRRLGARYGTIEQRCG 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+KHP  +N+L++LC+RY +   HR  HGALLD+ +L+DVY+ M  G ++++
Sbjct: 118 VLDTLVMARQKHPGQKNNLDALCRRYFVENGHRELHGALLDAEILADVYLAMTGGQTRLS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-GKN---AIW 237
            G     ++      + +  +S   R      R ++ E+  H+  +  + GKN    +W
Sbjct: 178 LGGNDGSEQGGDATAEAIRRLS-ADRPALAVVRPSESEMQRHNDKLTAIAGKNGEPTVW 235


>gi|219871037|ref|YP_002475412.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165]
 gi|219691241|gb|ACL32464.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165]
          Length = 256

 Score =  135 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 88/256 (34%), Positives = 137/256 (53%), Gaps = 17/256 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG++          IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQQILRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+++HGIT+E L DKP+F+ I  EF +F        I HNA FDVGFI+ E   +  
Sbjct: 60  DAEAMQVHGITNEMLADKPAFAEIADEFIEFIKGAE--LIIHNAPFDVGFIDHEFSFLPN 117

Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P        + D+L +AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPEKVAQMCTVTDSLQLARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M     QI    +   ++      + V     +     +     ++EL EH K ++ + 
Sbjct: 178 MMTG--GQIALIGEDEHEQVKTSSAEQVYQPLTIDTSNLIVLAPDEKELAEHLKYLELIN 235

Query: 233 K----NAIWDRYISSN 244
           K    N +W R +++ 
Sbjct: 236 KKSKGNCLWTRELATE 251


>gi|152978551|ref|YP_001344180.1| DNA polymerase III subunit epsilon [Actinobacillus succinogenes
           130Z]
 gi|150840274|gb|ABR74245.1| DNA polymerase III, epsilon subunit [Actinobacillus succinogenes
           130Z]
          Length = 259

 Score =  135 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 86/254 (33%), Positives = 129/254 (50%), Gaps = 11/254 (4%)

Query: 1   MIRKN-KMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M  +N  +R+IV D ETTG++      +   IIEIGAVEL++   T R   +++ P+ R 
Sbjct: 1   MKEENEIIRQIVLDTETTGMNQFGAHYEGHCIIEIGAVELINRKYTGRKLHLYVKPD-RP 59

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             PEA+K+HGITDE L DKP FS++  EF DF  +                       I+
Sbjct: 60  IDPEAIKVHGITDEMLADKPDFSTVAQEFIDFIKDAELLIHNAPFDVGFMDYEFRKHHID 119

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               D   + DTL +ARR++P  RN+L++LC R  I  S R+ HGALLD+ +L DVY+ M
Sbjct: 120 IKTADICTVTDTLQMARRQYPGKRNNLDALCDRLHIDNSKRTLHGALLDAEILGDVYLAM 179

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233
             G   +    +T       EE +       +  +  +   +T+EEL  H + +  + K 
Sbjct: 180 TGGQVSLFAEEETEISVQKTEEIEEEFIPVQVSSEGLIALPLTEEELAAHTEYLSLINKK 239

Query: 234 ---NAIWDRYISSN 244
              N IW + +S +
Sbjct: 240 SKDNCIWIKRLSPD 253


>gi|71907224|ref|YP_284811.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Dechloromonas aromatica RCB]
 gi|71846845|gb|AAZ46341.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Dechloromonas aromatica RCB]
          Length = 238

 Score =  135 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 74/236 (31%), Positives = 110/236 (46%), Gaps = 12/236 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD +   RIIE+  +E+++   T      ++ P  R+    A  +HGI
Sbjct: 1   MRQIVLDTETTGLDPRSGHRIIEVACIEMVNRRFTGHHLHKYINPE-REIDEGAQAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I  EF +F N                    +           + +ID
Sbjct: 60  TLEFLADKPKFADIADEFLEFINGAELIIHNAPFDIGFLNAELDRLGRVPVGTICNGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +A+  HP  RN L++LC+RY I  S R+ HGALLD+ LL+DV++ M  G + +    
Sbjct: 120 TLRMAKELHPGKRNSLDALCERYEIDNSSRTLHGALLDTELLADVFLAMTRGQNSLMIEP 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
                     + +      + +R      R   EE+ EH+  +  + K      IW
Sbjct: 180 DAEPRPNIGADGQ------VRERKPLSVRRAAPEEIAEHETVLAAIDKESKGACIW 229


>gi|165976701|ref|YP_001652294.1| DNA polymerase III epsilon chain [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876802|gb|ABY69850.1| DNA polymerase III epsilon chain [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 257

 Score =  135 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 85/251 (33%), Positives = 135/251 (53%), Gaps = 16/251 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+D+P F+ +  EF +F        I HNA FDV F++ E   +  
Sbjct: 60  EEEAIKVHGITNEFLQDRPVFAEVADEFIEFIKGAE--LIIHNAPFDVAFMDQEFSYLEN 117

Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P        + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G   +  G +             +  I+  +    +   +++EE   H++ ++ + 
Sbjct: 178 MMTGGQLAL-LGEEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236

Query: 233 K----NAIWDR 239
           K    N IW R
Sbjct: 237 KKSKGNCIWMR 247


>gi|255065954|ref|ZP_05317809.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256]
 gi|255049865|gb|EET45329.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256]
          Length = 255

 Score =  135 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 120/250 (48%), Gaps = 17/250 (6%)

Query: 2   IRKNKM--RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           I+K  M  R+I+ D ETTGL ++  DR++E   +E+++   T     +++ P  R    E
Sbjct: 11  IQKIPMSKRQIILDTETTGLYAEGGDRLVEFAGLEMINRQITGNNLHLYVHPE-RDMPEE 69

Query: 59  --ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
              +    I     K+ P F+ +  +  DF  +     I HNAKFDVGF+N E +R+   
Sbjct: 70  AAKVHGLTIEVLEEKNAPPFAEVGRQIADFIRDAE--LIIHNAKFDVGFLNMEFRRMGLP 127

Query: 117 PLDP--SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++     + DTL++AR   P  +  L++LC R  +  S R  HGAL+D  LL +VY+ M
Sbjct: 128 SIEELGCTVTDTLAMAREMFPGQKASLDALCNRLSVDRSKRVLHGALIDCELLGEVYLAM 187

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGK 233
                     F        ++E+     I+  KR       +   EEL  H++ +  LG+
Sbjct: 188 TRQQ------FDLMGGEKEEDEEVKPVIIAETKRPAHLKVIKANAEELAAHEQYLDGLGE 241

Query: 234 NAIWDRYISS 243
             +W +  ++
Sbjct: 242 ACLWRKAETA 251


>gi|110834086|ref|YP_692945.1| DNA polymerase III subunit epsilon [Alcanivorax borkumensis SK2]
 gi|110647197|emb|CAL16673.1| DNA polymerase III, epsilon subunit [Alcanivorax borkumensis SK2]
          Length = 247

 Score =  135 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 85/239 (35%), Positives = 129/239 (53%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTGL+     R+IEIG VE+ +   T  +  ++L P  R+    AL +HGI
Sbjct: 1   MRQVVLDTETTGLEPNDGHRVIEIGCVEMENRRLTGNSLHLYLNPE-REIDAGALAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSR 122
           + EFL DKP+F  +  EF  F +      + HNA FDVGF+N EL+R             
Sbjct: 60  SSEFLADKPTFDKVVDEFLAFVDGAE--LVIHNAPFDVGFLNHELRRLGTRYGTIEQRCG 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+KHP  +N L++LC+RY +   HR  HGALLD+ +L+DVY+ M  G +++ 
Sbjct: 118 VLDTLVMARQKHPGQKNSLDALCRRYFVENGHRELHGALLDAEILADVYLAMTGGQTRLF 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
            G   + +R      +T+  +S   R      R ++ E   H   +  + K      +W
Sbjct: 178 SGGNDSSERGGGAAAETIRRLS-ADRVPLCVVRASENEQQRHRNKLAAIAKKNGVPTVW 235


>gi|285017397|ref|YP_003375108.1| DNA polymerase III, epsilon subunit protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472615|emb|CBA15120.1| probable dna polymerase III, epsilon subunit protein [Xanthomonas
           albilineans]
          Length = 244

 Score =  135 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 131/239 (54%), Gaps = 13/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   + R F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWKKGNRVVEIGAVELLERRPSGRHFHRYLRPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSR 122
           T EFL DKP F  +  EF +F +      + HNA FD+GF++ EL R        LD + 
Sbjct: 60  TLEFLADKPEFHEVVDEFLEFIDGAE--LVIHNASFDLGFLDYELSRLGESYGCILDRAS 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR + P  RN L++LCKR G+  +HR  HGALLD+ +L +VYI +  G  +I 
Sbjct: 118 VVDTLLLARERFPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILCEVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F                    +LL R + L    T  EL+ H   + TL K    A+WD
Sbjct: 178 FALVEETTGKTDAHGVAFDMATLLPRPQVL---PTASELEAHQARLDTLRKKAGRALWD 233


>gi|52425625|ref|YP_088762.1| DNA polymerase III subunit epsilon [Mannheimia succiniciproducens
           MBEL55E]
 gi|52307677|gb|AAU38177.1| DnaQ protein [Mannheimia succiniciproducens MBEL55E]
          Length = 260

 Score =  135 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 77/246 (31%), Positives = 120/246 (48%), Gaps = 10/246 (4%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+I+ D ETTG++      +   IIEIGAVE+++   T R   +++ P+ R   PEA+K+
Sbjct: 9   RQILLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPD-RLVDPEAIKV 67

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGITDE L+DKP F+ +  EF DF                          I+    D   
Sbjct: 68  HGITDEMLEDKPVFTEVAQEFIDFIKGAELLIHNAPFDVGFMDYEFRKHHIDVKTADICS 127

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL +AR+ +P  RN L++LC R GI  + R  HGALLD+ +L DVY+ M  G + + 
Sbjct: 128 VTDTLQLARQMYPGKRNSLDALCDRLGIDNTKRVLHGALLDAEILGDVYLVMTGGQTSLF 187

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
              +         +   +   +          + T EEL  H + I+ + K    N +W+
Sbjct: 188 DDNEPELADIHSAKAHILAQNADKVAHHLSLLQPTDEELQAHLEYIKLINKKSKDNCLWE 247

Query: 239 RYISSN 244
           + + S+
Sbjct: 248 KRLGSD 253


>gi|319898105|ref|YP_004136302.1| DNA polymerase iii epsilon subunit [Haemophilus influenzae F3031]
 gi|317433611|emb|CBY81995.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3031]
          Length = 256

 Score =  135 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 128/256 (50%), Gaps = 15/256 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N                        +N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ M 
Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177

Query: 176 VGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            G + +       ++   R  +E+       ++         + T +EL  H + ++ + 
Sbjct: 178 GGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKMMN 237

Query: 233 K----NAIWDRYISSN 244
           K    N +WD+   +N
Sbjct: 238 KKSGNNCLWDKRFGNN 253


>gi|154245775|ref|YP_001416733.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
 gi|154159860|gb|ABS67076.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
          Length = 240

 Score =  135 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 94/240 (39%), Positives = 139/240 (57%), Gaps = 7/240 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR++EIG VE+++   T   F V++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLEAYGGDRLVEIGCVEMVNRILTGTVFHVYINPE-RDMPVEAFNVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F  +  EF +F  E     + HNA FD+GF+NAEL+R+ +  +   R++D
Sbjct: 60  SAEFLSDKPKFKDVADEFLNFIAE--DTLVIHNAAFDIGFLNAELERLGRPTIARDRVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++ARRKHP   N L+ L  RYGI  S R KHGALLD+ LL++VY +++ G      G 
Sbjct: 118 TLALARRKHPGGGNRLDDLMNRYGIDSSRRVKHGALLDAELLAEVYGELLGGKQASLIGL 177

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245
             +     +  +  V   +   R  PL  R+T  E + H   I ++G+ A+W +Y    +
Sbjct: 178 VEDTS---EAPRLVVAAAAAHPRPVPLAPRLTAAEAEAHAAFIASMGEKALWLKYADVPE 234


>gi|326405243|ref|YP_004285325.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
 gi|325052105|dbj|BAJ82443.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
          Length = 235

 Score =  135 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 13/232 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++FD ETTGL+    DR+IE+ A+EL +   T + F   + P  R    EA ++HG+T
Sbjct: 3   RAVLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGKVFHTLIDPE-RDIPAEASRVHGMT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +  KP F+ I +E  +FF E     +AHNA FD GF++AE  RI +  LD +R+IDT
Sbjct: 62  SADVAGKPKFAEIAAELLEFFAE--DPLVAHNAPFDFGFLDAEFARIGRAALDRARMIDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LC+R+ I +S R+ H ALLD  LL++VY+++   G Q      
Sbjct: 120 LALAKQRFPGMPNSLDALCRRFDIDLSARTTHNALLDCKLLAEVYVELTG-GRQRGLDLA 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
                   E +   P         P     +  EL  H+  I+ L K  +W 
Sbjct: 179 AESTIRLVEYRSEGPRT-------PRPIVASAAELAAHEAFIEKL-KEPVWR 222


>gi|167856497|ref|ZP_02479211.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755]
 gi|167852377|gb|EDS23677.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755]
          Length = 256

 Score =  135 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 88/256 (34%), Positives = 138/256 (53%), Gaps = 17/256 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M ++  +R++V D ETTG++          IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSKQQILRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+++HGIT+E L DKP+F+ I  EF +F        I HNA FDVGFI+ E   +  
Sbjct: 60  EAEAMQVHGITNEMLADKPAFAEIADEFIEFIKGAE--LIIHNAPFDVGFIDHEFSFLPN 117

Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P        + D+L +AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPEKVAQMCTVTDSLQLARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M     QI    +   ++      + V     +     +     ++EL EH K ++ + 
Sbjct: 178 MMTG--GQIALIGEDEHEQAKTSSVEQVYQPLNIDTSNLIVLAPDEKELAEHLKYLELIN 235

Query: 233 K----NAIWDRYISSN 244
           K    N +W R +++ 
Sbjct: 236 KKSKGNCLWTRELATE 251


>gi|261820459|ref|YP_003258565.1| DNA polymerase III subunit epsilon [Pectobacterium wasabiae WPP163]
 gi|261604472|gb|ACX86958.1| DNA polymerase III, epsilon subunit [Pectobacterium wasabiae
           WPP163]
          Length = 245

 Score =  135 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 82/242 (33%), Positives = 128/242 (52%), Gaps = 16/242 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNI 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLD 119
           HGI+DEFL DKP+++ I  +F DF        + HNA FD+GF++ E +   R       
Sbjct: 66  HGISDEFLADKPTYADIADDFLDFIRGAE--LVIHNATFDIGFMDYEFRLLNRDLPKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M     
Sbjct: 124 FCKITDSLFMARKIFPGKRNSLDALCDRYLIDNSKRTLHGALLDAEILAEVYLAMTG--G 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
           Q +  F  + +   + E        +  +         + EL  H++ +  + K     +
Sbjct: 182 QTSLTFSMDGETQQQNENSETIQRIVRPQSALTVLYADEVELLAHEQRLDLIAKKGGSCL 241

Query: 237 WD 238
           W 
Sbjct: 242 WR 243


>gi|148261748|ref|YP_001235875.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5]
 gi|146403429|gb|ABQ31956.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5]
          Length = 225

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 82/232 (35%), Positives = 124/232 (53%), Gaps = 13/232 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++FD ETTGL+    DR+IE+ A+EL +   T + F   + P  R    EA ++HG+T
Sbjct: 3   RAVLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGKVFHTLIDPE-RDIPAEASRVHGMT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +  KP F+ I +E  +FF E     +AHNA FD GF++AE  RI +  LD +R+IDT
Sbjct: 62  SADVAGKPKFAEIAAELLEFFAE--DPLVAHNAPFDFGFLDAEFARIGRAALDRARMIDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LC+R+ I  S R+ H ALLD  LL++VY+++   G Q      
Sbjct: 120 LALAKQRFPGMPNSLDALCRRFDIDFSARTTHNALLDCKLLAEVYVELTG-GRQRGLDLA 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
                   E +   P         P     +  EL  H+  I+ L K  +W 
Sbjct: 179 AESTIRLVEYRSEGPRT-------PRPVVASAAELAAHEAFIEKL-KEPVWR 222


>gi|303250637|ref|ZP_07336834.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650625|gb|EFL80784.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 257

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 86/251 (34%), Positives = 135/251 (53%), Gaps = 16/251 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKP F+ +  EF +F        I HNA FDV F++ E   +  
Sbjct: 60  EEEAIKVHGITNEFLQDKPVFAEVADEFIEFIKGAE--LIIHNAPFDVAFMDQEFSYLEN 117

Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P        + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G   +  G +             +  I+  +    +   +++EE   H++ ++ + 
Sbjct: 178 MMTGGQLAL-LGEEDATATHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236

Query: 233 K----NAIWDR 239
           K    N IW R
Sbjct: 237 KKSKGNCIWMR 247


>gi|145631632|ref|ZP_01787397.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
 gi|144982766|gb|EDJ90295.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
          Length = 256

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 128/256 (50%), Gaps = 15/256 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RSV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  I  +F D+ N                        +N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKEIAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLDLNV 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ M 
Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177

Query: 176 VGGSQINFGFKTNEDRFF---KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            G + +    ++ E       +E+       ++         + T +EL  H + ++ + 
Sbjct: 178 GGQTNLFDEEESVESDVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMN 237

Query: 233 K----NAIWDRYISSN 244
           K    N +WD+   +N
Sbjct: 238 KKSGNNCLWDKRFGNN 253


>gi|332288192|ref|YP_004419044.1| DNA polymerase III subunit epsilon [Gallibacterium anatis UMN179]
 gi|330431088|gb|AEC16147.1| DNA polymerase III subunit epsilon [Gallibacterium anatis UMN179]
          Length = 248

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 121/245 (49%), Gaps = 12/245 (4%)

Query: 8   RKIVFDIETTGLD----SK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D ETTG+      +   RIIEIGAVEL++   T R F V+L P+ ++  PEA+ +
Sbjct: 7   RIVVLDTETTGMSGTSEPQIGHRIIEIGAVELVNRRYTGRNFHVYLQPD-QQVDPEAVAV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGITDEFL DKP F  +  EF +F                       LQ          +
Sbjct: 66  HGITDEFLADKPRFKEVAQEFINFIKGAELVIHNAPFDVAFMNQEFALQGQALTTDQLCK 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + D+L +AR+ +P  +N L++LC R GI  S R+ HGALLD+ +L+DVY+ M  G   + 
Sbjct: 126 VTDSLKVARQLYPGKKNSLDALCSRLGIDNSKRTLHGALLDAEILADVYLAMTGGQGSLQ 185

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
              +       +E ++ + + +  ++      + + EE+  H + +  + K      +W 
Sbjct: 186 LDTEPAVAVQQQEVQQQIQHSNTPRK--LFVLKPSAEEIQAHQEYLSLINKKSGDQCLWQ 243

Query: 239 RYISS 243
           + +  
Sbjct: 244 QKLEQ 248


>gi|297538708|ref|YP_003674477.1| DNA polymerase III subunit epsilon [Methylotenera sp. 301]
 gi|297258055|gb|ADI29900.1| DNA polymerase III, epsilon subunit [Methylotenera sp. 301]
          Length = 235

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 12/240 (5%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  ++  R+IE+ AVE+++   T + F  +L P+ R+    A ++HGI
Sbjct: 1   MRQIFLDTETTGLYHAQGHRVIEVAAVEVINRRLTKQHFHYYLNPD-REIDQGAQEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL+DKP F+ I +E   F  +                    L          ++I D
Sbjct: 60  SLEFLQDKPHFADIANELIAFIADSELIMHNAPFDVGFLNREFGLIEQKPVEAITAKITD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IA+   P  RN L++LCK YGI  S R+ HGALLD+ LL+DVY+ M  G   +    
Sbjct: 120 TLKIAKEMRPGQRNSLDALCKHYGIDNSKRTLHGALLDAELLADVYMAMTRGQDSLMMEL 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWDRYISS 243
              + +     ++         +   L     + E+  HD+ I +L K  + +W ++ + 
Sbjct: 180 DKPQQKNSDAIQEI--------KQPVLVKLANQAEISAHDEYIASLAKSSDCLWAKFEAK 231


>gi|291616383|ref|YP_003519125.1| DnaQ [Pantoea ananatis LMG 20103]
 gi|291151413|gb|ADD75997.1| DnaQ [Pantoea ananatis LMG 20103]
          Length = 243

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 88/249 (35%), Positives = 136/249 (54%), Gaps = 18/249 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIG VE+++   T   F ++L P+ R  
Sbjct: 1   MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGGVEVINRRLTGNNFHMYLKPD-RLV 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QR 112
            PEA  +HGI DEFL DKP+FS I  EF D+        + HNA FD+GF++ E    QR
Sbjct: 59  DPEAFGVHGIADEFLLDKPTFSDIADEFLDYIRGAE--LVIHNASFDIGFMDYEFGKLQR 116

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             +      +I D+L++ARR  P  RN L++LC RY I  S R+ HGALLD+ +L++V++
Sbjct: 117 GIEKTETFCKITDSLAMARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAEILAEVFL 176

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M     Q +  F + E+R  +++ + +  I+            + EE+++H+  +  + 
Sbjct: 177 TMTG--GQTSLSFSSEEERARQQQSEGIQRIAR-PSSGLRVVTASDEEVNQHESRLDLIM 233

Query: 233 KN---AIWD 238
           K     +W 
Sbjct: 234 KKGGSCLWR 242


>gi|56416800|ref|YP_153874.1| DNA polymerase III epsilon chain [Anaplasma marginale str. St.
           Maries]
 gi|222475164|ref|YP_002563580.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Florida]
 gi|254995002|ref|ZP_05277192.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Mississippi]
 gi|255003148|ref|ZP_05278112.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Puerto Rico]
 gi|255004274|ref|ZP_05279075.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Virginia]
 gi|56388032|gb|AAV86619.1| DNA polymerase III epsilon chain [Anaplasma marginale str. St.
           Maries]
 gi|222419301|gb|ACM49324.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Florida]
          Length = 232

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 88/239 (36%), Positives = 135/239 (56%), Gaps = 11/239 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGLD+   DRIIEIG VEL+D+  T + F  ++ P  R     A K+HGIT
Sbjct: 4   REIVLDTETTGLDAASGDRIIEIGCVELVDFVMTGQVFHKYINPE-RDIPIAATKIHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +K+ P F+ +  +F +F  +  +  + HNA FD+ FI  E++RI K  L  + ++DT
Sbjct: 63  TDMVKNMPKFAEMADQFLNFVQD--SVLVIHNAGFDLKFIETEMERIGKTKL-YNPVVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +ARRK P     L++LCKR+ I+ S R  HGAL D+ LL+ VY+++   G Q + GF 
Sbjct: 120 LEVARRKFPGMPASLDALCKRFDISTSSRRFHGALKDATLLARVYVELCG-GIQRSLGFV 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245
           + +        K    +       P    I+  EL  H ++I  + K+ IW+ Y+ ++ 
Sbjct: 179 SGDLTQSTRASKASKPV----LQAPRAFTISDLELKLHAESISKM-KDPIWNMYLKTSD 232


>gi|294141155|ref|YP_003557133.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12]
 gi|293327624|dbj|BAJ02355.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12]
          Length = 242

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/242 (32%), Positives = 127/242 (52%), Gaps = 20/242 (8%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+I+ D ETTG++          RIIEIG VE+++   T R +  ++ P  +    EA++
Sbjct: 9   RQIILDTETTGMNQAAGAIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QLIDEEAIQ 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPL 118
           +HGI++E++ +KP F+ I   F +F +       AHNA FD+ F++ E    +       
Sbjct: 68  VHGISNEYVANKPKFAEIAQSFIEFIDGAEVV--AHNASFDISFMDHEFGLLRPKGPKTA 125

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D   I+DTL+IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+ M  G 
Sbjct: 126 DICGILDTLAIAKYLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLLMTGGQ 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAI 236
           ++ N    T         + +       +R K      + +EL +H+  +  + K     
Sbjct: 186 TKFNLSGDTGGIGAGGIIRLS------QERTKLKVISASADELAKHEARLDIVAKGGQCA 239

Query: 237 WD 238
           W 
Sbjct: 240 WR 241


>gi|84501202|ref|ZP_00999407.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola batsensis HTCC2597]
 gi|84390493|gb|EAQ02981.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola batsensis HTCC2597]
          Length = 230

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 95/235 (40%), Positives = 140/235 (59%), Gaps = 8/235 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL ++  T  T+ V++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPEQGDRIVEIGAVELWNHVPTGETYHVYINPE-RSMPQEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F  +   F +F  +  A+ + HNA FD+ FINAEL  +N   +   + ID
Sbjct: 60  GDDFLRDKPVFRDVARGFVEFVKD--AKLVIHNASFDMKFINAELGWLNIPAIPWDQAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR++ P S   L++LC+R+GI  S R+ HGALLDS +L++VY++++  G Q +F  
Sbjct: 118 TLAIARQRFPGSPASLDALCRRFGIDNSARTLHGALLDSEILAEVYLELIG-GRQPDFAL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             +       +     +     R  PL  RIT EE   H + ++ LG  A+W  Y
Sbjct: 177 SASTGTQTGTD---TADWRPKPRPTPLPPRITAEEAAAHAEFVERLGDGALWKSY 228


>gi|329114274|ref|ZP_08243036.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001]
 gi|326696350|gb|EGE48029.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001]
          Length = 224

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 90/233 (38%), Positives = 130/233 (55%), Gaps = 12/233 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I+FD ETTGLD    DR+IEI A+EL+    T RTF   + P  R    EA ++HG T
Sbjct: 3   RSILFDTETTGLDPATGDRVIEIAALELVGDLPTGRTFHKLIDPE-RDVPEEASRVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+ KP F+ +  +F  F  +     IAHNA+FD GF+NAEL+R  K  L   R++DT
Sbjct: 62  RADLEGKPKFAEVADDFLAFVGD--DPLIAHNARFDFGFMNAELKRAGKKTLGLDRMVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +AR + P   N L++LC+R+G+ +S R+ H ALLD  LL+DVY+++M  G Q   G  
Sbjct: 120 LDMARERFPGMPNSLDALCRRFGVDLSARTTHNALLDCKLLADVYVELMG-GRQHGLGLM 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             + +      +   N  +++       + T +EL  H   +  L K  IW+R
Sbjct: 179 AEDGQLPSVMYEGPVNRKVVR------VQPTPQELAAHAAFVAGL-KEPIWER 224


>gi|15604567|ref|NP_221085.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
           Madrid E]
 gi|6685391|sp|Q9ZCJ9|DPO3E_RICPR RecName: Full=DNA polymerase III subunit epsilon
 gi|3861262|emb|CAA15161.1| DNA POLYMERASE III, EPSILON CHAIN (dnaQ) [Rickettsia prowazekii]
 gi|292572374|gb|ADE30289.1| DNA polymerase III epsilon chain [Rickettsia prowazekii Rp22]
          Length = 229

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 85/228 (37%), Positives = 128/228 (56%), Gaps = 11/228 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGLD +   RI+EIGA+E+++   T + F  ++ P  R    EA K+HGI+
Sbjct: 5   REIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGKHFHFYINPE-RDMPFEAYKIHGIS 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123
            EFLKDKP F +I ++F  F  +  +  I HNA FD+ F+N E   L+R     L+ +  
Sbjct: 64  GEFLKDKPLFKTIANDFLKFIAD--STLIIHNAPFDIKFLNHELSLLKRTEIKFLELTNT 121

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +AR   P +R  L++LCKR+ +  S R  HGAL D+ LL++VY+ +   G Q  F
Sbjct: 122 IDTLVMARNMFPGARYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVALTG-GRQSTF 180

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
                 D         V  + + +  + +  + TKEEL +H + I  +
Sbjct: 181 KMINKPDEI---NNLAVKCVDVQQIKRGIVVKPTKEELQKHKEFIDKI 225


>gi|315179370|gb|ADT86284.1| DNA polymerase III, epsilon subunit [Vibrio furnissii NCTC 11218]
          Length = 234

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 88/240 (36%), Positives = 131/240 (54%), Gaps = 18/240 (7%)

Query: 11  VFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+      EA+++HG
Sbjct: 2   VLDTETTGMNLEGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRAIQD-EAIEVHG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---S 121
           ITDEFL DKP +  +  EF DF        +AHNA FDVGF++ E  +++          
Sbjct: 61  ITDEFLVDKPEYKDVHEEFLDFIRGAE--LVAHNAPFDVGFMDYEFSKLSIPTAKTDELC 118

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G + +
Sbjct: 119 KVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 178

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWDR 239
            F   + E+       K V       R      R T +E+  H   +  + K+   +W +
Sbjct: 179 QFSGSSQENGMGAGAIKRVAEG----RKALKVLRATADEIQAHQDRLDIVEKSGTCLWRQ 234


>gi|50122261|ref|YP_051428.1| DNA polymerase III subunit epsilon [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612787|emb|CAG76237.1| DNA polymerase III, epsilon chain [Pectobacterium atrosepticum
           SCRI1043]
          Length = 245

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 81/242 (33%), Positives = 129/242 (53%), Gaps = 16/242 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNI 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLD 119
           HGI+DEFL DKP+++ +  +F DF        + HNA FD+GF++ E +   R       
Sbjct: 66  HGISDEFLADKPTYADVADDFLDFIRGAE--LVIHNATFDIGFMDYEFRLLNRNIPKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR+  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKITDSLFMARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            + F  +    R  +  +     +              + EL  H++ +  + K     +
Sbjct: 184 SLTFSMEGEAQRQNESNETIQRIVRPQS--ALKVLYADETELLAHEQRLDLVAKKGGSCL 241

Query: 237 WD 238
           W 
Sbjct: 242 WR 243


>gi|83749368|ref|ZP_00946363.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551]
 gi|207742873|ref|YP_002259265.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum
           IPO1609]
 gi|83723945|gb|EAP71128.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551]
 gi|206594267|emb|CAQ61194.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum
           IPO1609]
          Length = 242

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 113/238 (47%), Gaps = 11/238 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR+IEIG VEL++   T R    ++ P  R+  P A+ +HGI
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPE-REIDPGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+EF+ DKP F+ + +E  D+     A             +      +          ID
Sbjct: 60  TNEFVADKPKFAEVVAEIRDYVQGAEAIIHNAAFDLGFLDMEFRRLGLPSFREHLDGHID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  ARR  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G + +    
Sbjct: 120 TLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239
               +    E          L   +      T+ E   H   ++ + K      +W R
Sbjct: 180 LEGGETAATEAAAVD-----LSGLELPILLATEVEAAAHATVLKEIDKASGGKTVWSR 232


>gi|170739343|ref|YP_001767998.1| DNA polymerase III subunit epsilon [Methylobacterium sp. 4-46]
 gi|168193617|gb|ACA15564.1| DNA polymerase III, epsilon subunit [Methylobacterium sp. 4-46]
          Length = 238

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 97/240 (40%), Positives = 142/240 (59%), Gaps = 10/240 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R+IV D ETTG D+K DR++EIG +ELL++  T R F  ++ P  R  S  AL +HG+ D
Sbjct: 3   REIVLDTETTGTDAKTDRLVEIGGIELLNHIPTGREFHRYINPQ-RPVSQGALAVHGLAD 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSRII 124
            FL DKP F++I   F DF  +       HNA FDVGF+NAE  R        +D + ++
Sbjct: 62  AFLADKPPFAAILPAFLDFCGDATFV--IHNAAFDVGFLNAEYARLGDAAPPAIDLAGVV 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++ARRKHP++ N+L++LC RYGI  S R+KHGALLD+ +L++VYI+++  G Q + G
Sbjct: 120 DTLALARRKHPNAANNLDALCARYGIDNSRRTKHGALLDAQILAEVYIELLG-GKQTSLG 178

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
              +     +      P   +    + + +R+T+ E + H      LG  AIW  YI  +
Sbjct: 179 LTLDVASTVRVATLGGPAAHV---PRAVRSRLTQAEREAHAAFTAGLGGGAIWRDYIGED 235


>gi|322831648|ref|YP_004211675.1| DNA polymerase III, subunit epsilon [Rahnella sp. Y9602]
 gi|321166849|gb|ADW72548.1| DNA polymerase III, epsilon subunit [Rahnella sp. Y9602]
          Length = 245

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 125/242 (51%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D ETTG++      +  RIIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 9   RIVVLDTETTGMNKLGVHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPD-RLVDPEAFGV 67

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLD 119
           HGI+DEFL DKP+F+ +  +F ++        + HNA FD+GF++ E             
Sbjct: 68  HGISDEFLADKPTFADVADDFIEYIRGGE--LVIHNATFDIGFMDYEFDMLGRNLPKTET 125

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN+L++L  RY I  S R+ HGALLDS +L++VY+ M  G +
Sbjct: 126 FCKITDSLAMARKLFPGKRNNLDALSDRYLIDNSKRTLHGALLDSEILAEVYLMMTGGQT 185

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
            I F   T+E                           T +EL  H++ +  + K     +
Sbjct: 186 SIKF---THEGEQNTGADGLGIQRVARPASGLKVIAATDQELAWHEERLDLVVKKGGSCL 242

Query: 237 WD 238
           W 
Sbjct: 243 WR 244


>gi|258541965|ref|YP_003187398.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633043|dbj|BAH99018.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636100|dbj|BAI02069.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639155|dbj|BAI05117.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642209|dbj|BAI08164.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645264|dbj|BAI11212.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648319|dbj|BAI14260.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651372|dbj|BAI17306.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654363|dbj|BAI20290.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 224

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 89/232 (38%), Positives = 127/232 (54%), Gaps = 12/232 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I+FD ETTGLD    DR+IEI A+EL+    T R F   + P  R    EA ++HG T
Sbjct: 3   RSILFDTETTGLDPATGDRVIEIAALELVGDLPTGRNFHTLIDPE-RDVPEEASRVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+ KP F+ I  +F  F  +     IAHNA+FD GF+NAEL+R  K  L   R++DT
Sbjct: 62  RADLEGKPKFAEIADDFLAFVGD--DPLIAHNARFDFGFMNAELKRAGKKTLGLDRMVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +AR + P   N L++LC+R+G+ +S R+ H ALLD  LL+DVY+++M  G Q   G  
Sbjct: 120 LDMARERFPGMPNSLDALCRRFGVDLSARTTHNALLDCKLLADVYVELMG-GRQHGLGLM 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
             + +      +   N   ++       + T EEL  H   +  L K  +W+
Sbjct: 179 AEDGQLPSVMYEGPVNRKAVR------VQPTAEELAAHAAFVAGL-KEPVWE 223


>gi|171057726|ref|YP_001790075.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170775171|gb|ACB33310.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
          Length = 241

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 117/244 (47%), Gaps = 9/244 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  +  DR++E+G VE+++   T R    +  P  R N  EA+++HG+
Sbjct: 1   MRQIFLDTETTGLSHESGDRVVELGCVEMVNRRLTGRNLHHYFNPQ-RANHEEAVRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD FL DKP FS++  EF DF  +        N          +            ++ D
Sbjct: 60  TDAFLADKPLFSAVAQEFVDFVRDAEIIAHNANFDVGFLDAELKRIGHPPLKQLVDKVTD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L +AR + P   N L++LC+R  +  + R+ HGALLD+ LL++VYI+M  G + +    
Sbjct: 120 SLVMAREQFPGKANSLDALCRRLEVDNTSRTVHGALLDAGLLAEVYIRMTRGQNSLVIDD 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDRYI 241
              +     E+     +++              EE+  H+  +  L K++    +W    
Sbjct: 180 SPVQSEQQVEQPLIAVDLTAFVLP---VLVAEDEEIAAHEAVLSGLDKSSGGKTLWRSIG 236

Query: 242 SSNQ 245
           +S Q
Sbjct: 237 ASVQ 240


>gi|253999157|ref|YP_003051220.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4]
 gi|253985836|gb|ACT50693.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4]
          Length = 234

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/234 (32%), Positives = 111/234 (47%), Gaps = 10/234 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL   +  RIIEI AVE+++   T++ + V+L P+ R+    A ++HGI
Sbjct: 1   MRQIFLDTETTGLYPAQGHRIIEIAAVEVINRRITSQHYHVYLNPD-REIDAGAQEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL+DKP F+ +  EF DF  +                               S IID
Sbjct: 60  TLEFLQDKPRFADVVGEFLDFVQDSELIIHNAPFDVGFLNAELGRIEKPGIESVASGIID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +A+   P  RN+L++LC+ +GI  S R+ HGALLD+ LL+DVY+ M  G   +    
Sbjct: 120 TLKMAKEMRPGQRNNLDALCRHFGIDNSKRTLHGALLDAELLADVYLAMTRGQESLIIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIW 237
                     +   +  IS             + E   H + +Q L K    +W
Sbjct: 180 LDTPVHNDDNDALQIQAISQ------KVVLADETETAAHQQYLQGLAKGGACVW 227


>gi|253996734|ref|YP_003048798.1| DNA polymerase III subunit epsilon [Methylotenera mobilis JLW8]
 gi|253983413|gb|ACT48271.1| DNA polymerase III, epsilon subunit [Methylotenera mobilis JLW8]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 75/235 (31%), Positives = 112/235 (47%), Gaps = 12/235 (5%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  ++  R+IEI AVE+++   T   F  +L P+ R   P A ++HGI
Sbjct: 1   MRQIFLDTETTGLYHAQGHRVIEIAAVEVVNRRLTKHHFHYYLNPD-RDIDPGAQEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL+DKP F+ I +E   F  +                    L    K     +++ D
Sbjct: 60  SLEFLQDKPRFADIANELITFIADAELIMHNAPFDVGFLNCELGLIGQKKVEEISAKVTD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IA+   P  RN+L++LCK +GI  S R+ HGALLD+ LL+DVY+ M  G   +    
Sbjct: 120 TLKIAKEMRPGQRNNLDALCKYFGIDNSKRTLHGALLDAELLADVYMAMTRGQDSLMIAL 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWD 238
                   +        +S +             EL +H+  +  L K  N +W+
Sbjct: 180 DQPSHETVE--------VSAVSHAPLQVKLANSTELADHEAYLAGLAKSGNCVWN 226


>gi|307610085|emb|CBW99626.1| hypothetical protein LPW_13941 [Legionella pneumophila 130b]
          Length = 233

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 120/230 (52%), Gaps = 6/230 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTG+  +   R+IEIG +EL+D   T + F ++L P  R+    A ++HGI
Sbjct: 1   MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL+DKP F  I +EF  F                      +  + NK   D  RI+D
Sbjct: 60  STEFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR KHP  RN L++LCKRY I   +R  HGALLD+ +L+ VY+ M  G S      
Sbjct: 120 TLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSS----L 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            T  +  F + K     I  L   KP+  +  +EEL +H   ++ + K +
Sbjct: 176 FTEVESSFSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKS 225


>gi|218529738|ref|YP_002420554.1| DNA polymerase III subunit epsilon [Methylobacterium
           chloromethanicum CM4]
 gi|218522041|gb|ACK82626.1| DNA polymerase III, epsilon subunit [Methylobacterium
           chloromethanicum CM4]
          Length = 236

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 89/239 (37%), Positives = 138/239 (57%), Gaps = 10/239 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG +++  DR+IEIG VEL+++ +T  TF   + P  R  S  A  +HGI+
Sbjct: 3   REIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGAFAVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSRI 123
           D  L DKP F+ +   F +F ++     + HNA FDVGF+N E           +    +
Sbjct: 62  DAMLADKPVFAEVVDAFLEFCSDAR--LVIHNAPFDVGFLNMEFARLGPAAPKAIALEDV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +ARRKHP + N+L++LC RYG+  + R KHGALLD+ +L++VY++++  G Q + 
Sbjct: 120 VDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELLG-GKQTSL 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           G    E            +  +  R  P+ +R+T+ E   HD  +++LG NA+W  Y+ 
Sbjct: 179 GLSIAEPAETVALGALTDSGPVGPR--PIRSRLTEGERLRHDSFVESLGTNAVWREYME 235


>gi|54297294|ref|YP_123663.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris]
 gi|53751079|emb|CAH12490.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris]
          Length = 233

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 81/230 (35%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTG+  +   R+IEIG +EL+D   T + F ++L P  R+    A ++HGI
Sbjct: 1   MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL+DKP F  I +EF  F                      +  + NK   D  RI+D
Sbjct: 60  STEFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR KHP  RN L++LCKRY I   +R  HGALLD+ +L+ VY+ M  G S      
Sbjct: 120 TLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSS----L 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            T  +    + K     I  L   KP+  +  +EEL +H   ++ + K +
Sbjct: 176 FTEVESSLSQSKIKTQEIKSLSLKKPVIMKANEEELIQHQSFVEFISKKS 225


>gi|78485275|ref|YP_391200.1| DNA polymerase III, epsilon subunit [Thiomicrospira crunogena
           XCL-2]
 gi|78363561|gb|ABB41526.1| DNA polymerase III, epsilon subunit [Thiomicrospira crunogena
           XCL-2]
          Length = 231

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 115/232 (49%), Gaps = 10/232 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTG D K  D+IIEIGAVEL+    T+  +  ++ P  R    +A+++HGI
Sbjct: 1   MRQILLDTETTGFDPKNGDKIIEIGAVELIKRKLTHNNYHQYIQPE-RDVPIDAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA--HNAKFDVGFINAELQRINKDPLDPSRI 123
           T+EFL  KP F+ +  +F ++             +  F    ++           D   I
Sbjct: 60  TNEFLVGKPIFADVVDDFMEYVAGAELIIHNAPFDVGFINQELSQLPNNKWGKIEDHCTI 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L +AR+ +P  RN L++LCKR+ I  S+R+ HGALLDS +L+DVY+ M  G + +  
Sbjct: 120 TDSLKMARKAYPGQRNSLDALCKRFLIDNSNRTLHGALLDSEILADVYLAMTGGQTALIL 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
             +                    +R      + + EEL  H+  +Q + +  
Sbjct: 180 ADEEGSSSDASRVNLNT------QRAPLKVLKASAEELAAHNGKLQQISEKC 225


>gi|149908875|ref|ZP_01897535.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
 gi|149808149|gb|EDM68090.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
          Length = 245

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 137/239 (57%), Gaps = 19/239 (7%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IVFD ETTG++          R+IEIG +EL++   T RT+ V++ P+ R   PEA+ 
Sbjct: 14  RVIVFDTETTGMNMGAGGVHIGHRVIEIGCIELINRRPTGRTYHVYIKPD-RLVDPEAIA 72

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118
           +HGITDEFL+DKPSF++I  EF  F        +AHNA FD  F++ E + +NK      
Sbjct: 73  VHGITDEFLQDKPSFATIADEFIAFIVGAE--LVAHNASFDTNFLDHEFRLLNKGLPATK 130

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +  +I DTL+IA++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 131 EICKITDTLAIAKKLFPGKRNNLDVLCTRYGIDNSHRTLHGALLDAEILADVYLFMTGGQ 190

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           +++N    +   +     +          R      + T +EL  HD+ +  +  +A+W
Sbjct: 191 TKLNLSQDSANSQGGGIRRVAAS------RAPLKVVQATDDELKAHDERL-GIVGDALW 242


>gi|33151469|ref|NP_872822.1| DNA polymerase III epsilon chain [Haemophilus ducreyi 35000HP]
 gi|33147689|gb|AAP95211.1| DNA polymerase III epsilon chain [Haemophilus ducreyi 35000HP]
          Length = 256

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 85/257 (33%), Positives = 134/257 (52%), Gaps = 18/257 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M     +R++V D ETTG++          IIEIGAVEL++   T RTF V++ P  R+ 
Sbjct: 1   MSEPQIIRQVVLDTETTGMNFNGPPQIGHNIIEIGAVELINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---R 112
             EA+K+HGIT+ FL+DKP+F+ I  EF  F        I HNA FDV FI+ E      
Sbjct: 60  EEEAIKVHGITNAFLQDKPTFAEIAHEFLAFIQGAE--LIIHNAPFDVAFIDQEFSSLVN 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 +   + DTL +AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPSKTAEMCTVTDTLQMARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M     Q+    +       ++ + ++           +  ++++EE   H + +  L 
Sbjct: 178 MMTG--GQLALLTEEEHSHTQQQRETSLAVKEHFDTSGLIVLQLSQEECQAHQEYLALLD 235

Query: 233 K----NAIWDRYISSNQ 245
           K    N +W+  ++  +
Sbjct: 236 KKSKGNCLWN-MLTKAE 251


>gi|240138045|ref|YP_002962517.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
 gi|240008014|gb|ACS39240.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
          Length = 236

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 89/239 (37%), Positives = 137/239 (57%), Gaps = 10/239 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG +++  DR+IEIG VEL+++ +T  TF   + P  R  S  A  +HGI+
Sbjct: 3   REIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGAFAVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSRI 123
           D  L DKP F+ +   F +F  +     + HNA FDVGF+N E           +    +
Sbjct: 62  DAMLADKPVFAEVVDAFLEFCGDAR--LVIHNAPFDVGFLNMEFARLGPAAPKAIALEDV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +ARRKHP + N+L++LC RYG+  + R KHGALLD+ +L++VY++++  G Q + 
Sbjct: 120 VDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELLG-GKQTSL 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           G    E            +  +  R  P+ +R+T+ E   HD  +++LG NA+W  Y+ 
Sbjct: 179 GLSIAEPAETVALGALTDSGPVGPR--PIRSRLTEGERLRHDSFVESLGTNAVWREYME 235


>gi|23010300|ref|ZP_00051037.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 236

 Score =  133 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 87/239 (36%), Positives = 135/239 (56%), Gaps = 10/239 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG D+K  DR+IEIG VEL+++ +T   +   + P  R  S  A  +HGI+
Sbjct: 3   REIVLDTETTGTDAKNGDRLIEIGCVELINHVQTGAYYHQLINPQ-RPVSEGAFAVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSRI 123
           D  L DKP F+ +   F  F  +     + HNA FDVGF+N E           +    +
Sbjct: 62  DAMLADKPVFADVVDAFVAFCGDAR--LVIHNAPFDVGFLNMEFAKLGPAAPPLIVLEDV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +ARRKHP + N+L++LC RYG+  + R KHGALLD+ +L++VY++++  G Q + 
Sbjct: 120 VDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELLG-GKQTSL 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           G    E       +    +  +  R   + +R+T++E   H   +++LG NA+W  Y+ 
Sbjct: 179 GLSIAEPAGSVAVEAVADSGPIAPRA--MRSRLTEDERLRHVSFVESLGTNAVWRDYLE 235


>gi|301155941|emb|CBW15411.1| DNA polymerase III epsilon subunit [Haemophilus parainfluenzae
           T3T1]
          Length = 253

 Score =  133 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 116/247 (46%), Gaps = 11/247 (4%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ P+ R   P+A+K+
Sbjct: 6   RQIVLDTETTGMNQIGAHYEGHCIIEIGAVEMINRKYTGNNFHIYIKPD-RLVDPDAIKV 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGITDE L DKP F +I  +F ++                          ++    D   
Sbjct: 65  HGITDEMLADKPDFKTIAQDFIEYIRGAELLIHNAPFDVGFMDYEFRKLGLDIKTTDICL 124

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL +AR+ +P  RN L++LC R GI  S R+ HGALLD+ +L+DVY+ M  G + + 
Sbjct: 125 VTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLSMTGGQTSLF 184

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                +               ++         + T +E+  H   ++ + K       W 
Sbjct: 185 DEDHADISIIQAGANMQDRQSTVNFSQNLKVLQPTDDEIQAHLDFLKLVNKKSDGKCFWS 244

Query: 239 RYISSNQ 245
              +S++
Sbjct: 245 -IRTSDE 250


>gi|163752245|ref|ZP_02159446.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99]
 gi|161327875|gb|EDP99054.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99]
          Length = 240

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 78/242 (32%), Positives = 126/242 (52%), Gaps = 22/242 (9%)

Query: 8   RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+++ D ETTG++          RIIEIG VE+++   T R +  ++ P  +    EA+ 
Sbjct: 9   RQVILDTETTGMNQGAGAIFLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QLIDEEAIA 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPL 118
           +HGI++E++ +KP F+ I   F +F +       AHNA FD+ F++ E    Q       
Sbjct: 68  VHGISNEYVANKPKFAEIAQSFIEFIDGAEVV--AHNASFDISFMDHEFGLLQPKGPKTA 125

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D   I+DTL+IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+ M  G 
Sbjct: 126 DICAILDTLAIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLLMTGGQ 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI-- 236
           +++N    +                   +R K      + +EL +H+  +  + K  +  
Sbjct: 186 TKLNLSGDSGGAGGI--------IRLSQERTKLKVIAASADELAKHEARLDIVAKGGLCA 237

Query: 237 WD 238
           W 
Sbjct: 238 WR 239


>gi|28899066|ref|NP_798671.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837020|ref|ZP_01989687.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|260361704|ref|ZP_05774731.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|260876852|ref|ZP_05889207.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260897333|ref|ZP_05905829.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|260899809|ref|ZP_05908204.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|28807290|dbj|BAC60555.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749793|gb|EDM60538.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|308088283|gb|EFO37978.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308091367|gb|EFO41062.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308107229|gb|EFO44769.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308113581|gb|EFO51121.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
          Length = 240

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 93/241 (38%), Positives = 138/241 (57%), Gaps = 20/241 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V++ P+ R+  PEA++
Sbjct: 11  RIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPEAIQ 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPL 118
           +HGITDEFL DKP ++SI  EF DF        +AHNA FD GF++ E +          
Sbjct: 70  VHGITDEFLVDKPEYASIHQEFLDFIKGAE--LVAHNAPFDTGFMDYEFEKLDPTIGKTD 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           + + F          K+E        +  R      R T +EL+ H K ++ +  + IW 
Sbjct: 188 TSLEFN-------ANKQEGGVETIRRIEGRKALKVLRATADELEAHQKRLELVN-DCIWH 239

Query: 239 R 239
           +
Sbjct: 240 Q 240


>gi|190573031|ref|YP_001970876.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
           K279a]
 gi|190010953|emb|CAQ44562.1| putative DNA polymerase III, epsilon chain [Stenotrophomonas
           maltophilia K279a]
          Length = 243

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 89/239 (37%), Positives = 127/239 (53%), Gaps = 13/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +RI+EIG VEL     T   +  ++ P+  +    A ++ G+
Sbjct: 1   MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDC-EFEQGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           T EFL DKP F+ I  EF  F +      I HNA FD+GF++ EL           D   
Sbjct: 60  TLEFLDDKPEFAQIADEFLAFIDGAE--LIIHNAAFDLGFLDNELSLLGPQYGKITDRCT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDTL++AR + P  RN L++LCKR G+  SHR+ HG LLD+ +L DVYI +  G  +I 
Sbjct: 118 VIDTLAMARERFPGQRNSLDALCKRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           FG   ++        +      LL R +      T  EL+ H   ++ L K    A+WD
Sbjct: 178 FGLGDDDGGGAGAALQAFDTSKLLPRPR---VVATPSELEAHAARLERLRKKAGHALWD 233


>gi|313201259|ref|YP_004039917.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688]
 gi|312440575|gb|ADQ84681.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688]
          Length = 234

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 76/234 (32%), Positives = 111/234 (47%), Gaps = 10/234 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL   +  RIIEI AVE+++   T++ + V+L P+ R+    A ++HGI
Sbjct: 1   MRQIFLDTETTGLYPAQGHRIIEIAAVEVINRRITSQHYHVYLNPD-REIDAGAQEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL+DKP F+ +  EF DF  +                               S IID
Sbjct: 60  TLEFLQDKPRFADVVGEFLDFVQDSELIIHNAPFDVGFLNAELGRIEKPGIESVASGIID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +A+   P  RN+L++LC+ +GI  S R+ HGALLD+ LL+DVY+ M  G   +    
Sbjct: 120 TLKMAKEMRPGQRNNLDALCRHFGIDNSKRTLHGALLDAELLADVYLAMTRGQESLIIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIW 237
                     +   +  IS             + E   H + +Q L K    +W
Sbjct: 180 LDTPVHNDDNDALQIQAISH------KVVLADETETAAHQQYLQGLAKGGACVW 227


>gi|145628970|ref|ZP_01784769.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21]
 gi|144978473|gb|EDJ88196.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21]
          Length = 256

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 128/256 (50%), Gaps = 15/256 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N                        +N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ M 
Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177

Query: 176 VGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            G + +       ++   R  +E+       ++         + T +EL  H + ++ L 
Sbjct: 178 GGQTNLFDEEESVESEVIRVVQEKAAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMLN 237

Query: 233 K----NAIWDRYISSN 244
           K    N +WD+   +N
Sbjct: 238 KKSGNNCLWDKRFGNN 253


>gi|54294270|ref|YP_126685.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens]
 gi|53754102|emb|CAH15575.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens]
          Length = 233

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 120/230 (52%), Gaps = 6/230 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTG+  +   R+IEIG +EL+D   T + F ++L P  R+    A ++HGI
Sbjct: 1   MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL+DKP F  I +EF  F                      +  + NK   D  RI+D
Sbjct: 60  STEFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR KHP  RN L++LCKRY I   +R  HGALLD+ +L+ VY+ M  G S      
Sbjct: 120 TLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSS----L 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            T  +  F + K     I  L   KP+  +  +EEL +H   ++ + K +
Sbjct: 176 FTEVESSFSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKS 225


>gi|198282704|ref|YP_002219025.1| DNA polymerase III subunit epsilon [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665705|ref|YP_002424896.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198247225|gb|ACH82818.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517918|gb|ACK78504.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 248

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 97/240 (40%), Positives = 138/240 (57%), Gaps = 13/240 (5%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++V D ETTG+D  +  R+IEIGAVEL+D   T   +Q +L P  R + PEAL++HG+T
Sbjct: 4   RQVVLDTETTGIDWKQGHRVIEIGAVELIDRRVTEAYYQQYLNPQ-RSSDPEALRIHGLT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFL+D+P F+ +   F +F  +     I HNA FD+GF+N ELQ   K PL    ++DT
Sbjct: 63  DEFLQDQPGFAEVADAFLEFLGDAE--LIIHNAPFDLGFLNHELQLAGKAPL-RQAVMDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L+ ARR+HP  +NDLNSLC+RY +  SHR  HGALLD+ +L++VY+ M  G   +     
Sbjct: 120 LADARRRHPGQKNDLNSLCRRYSVENSHRELHGALLDTRILAEVYLAMTGGQVDMMGMLG 179

Query: 187 TNEDRFFKE--------EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
                   E          + +P      R      R + EE   H + +Q +G NA+W+
Sbjct: 180 AAGGSAATEMRSAGDDRRSEGIPAALSRPRGPLRVIRASAEECMLHRQYLQNMGGNALWE 239


>gi|157803402|ref|YP_001491951.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str.
           McKiel]
 gi|157784665|gb|ABV73166.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str.
           McKiel]
          Length = 229

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 83/228 (36%), Positives = 130/228 (57%), Gaps = 11/228 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGLD +   RI+EIGA+E+++   T R F  ++ P  R    EA ++HG++
Sbjct: 5   REIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGLS 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123
           DEFLKDKP F +I  +F +F ++  ++ I HNA FD+ F+N E   L+R     L+ +  
Sbjct: 64  DEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTEIKLLELANT 121

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +AR   P ++ +L++LCKR+ +  S R  H AL D+ LL++VY+ +   G Q  F
Sbjct: 122 IDTLVMARSMFPGAKYNLDALCKRFKVDNSGRQVHSALKDAALLAEVYVALTG-GRQSTF 180

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
                 DR  +        ++   +   +  + TKEEL +H   I  +
Sbjct: 181 KIV---DRSIRINNLATHQVNNKTQQTTIVIKPTKEELQKHKDFINKI 225


>gi|300724515|ref|YP_003713838.1| DNA polymerase III subunit epsilon [Xenorhabdus nematophila ATCC
           19061]
 gi|297631055|emb|CBJ91741.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Xenorhabdus nematophila ATCC
           19061]
          Length = 249

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 89/244 (36%), Positives = 132/244 (54%), Gaps = 21/244 (8%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F +++ P  R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRHFHIYIKPE-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+DEFL+DKP F+ I  EF +F        I HNA FD+GF++ E  ++N+D      
Sbjct: 66  HGISDEFLQDKPLFADIADEFIEFIRGAE--LIIHNATFDIGFMDYEFSKLNRDIPPTAD 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +AR+  P  RN+L++LC RY I  S R+ HGALLD+ +LSDVY+ M  G +
Sbjct: 124 FCTITDSLMLARKLFPGKRNNLDALCDRYHIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKN--- 234
            + F  +             V  I  + R +        + EEL +H+  +  + K    
Sbjct: 184 SLAFSMEGEVSS-----HALVSEIHKITRPQVGLKVIYASDEELTQHESRLDLVEKKGGS 238

Query: 235 AIWD 238
            +W 
Sbjct: 239 CLWR 242


>gi|328474397|gb|EGF45202.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
          Length = 240

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 93/241 (38%), Positives = 138/241 (57%), Gaps = 20/241 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V++ P+ R+  PEA++
Sbjct: 11  RIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPEAIQ 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPL 118
           +HGITDEFL DKP ++SI  EF DF        +AHNA FD GF++ E +          
Sbjct: 70  VHGITDEFLVDKPEYASIHQEFLDFIKGAE--LVAHNASFDTGFMDYEFEKLDPTIGKTD 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           + + F          K+E        +  R      R T +EL+ H K ++ +  + IW 
Sbjct: 188 TSLEFN-------ANKQEGGVETIRRIEGRKALKVLRATADELEAHQKRLELVN-DCIWH 239

Query: 239 R 239
           +
Sbjct: 240 Q 240


>gi|68248745|ref|YP_247857.1| DNA polymerase III subunit epsilon [Haemophilus influenzae
           86-028NP]
 gi|68056944|gb|AAX87197.1| DNA polymerase III, epsilon chain [Haemophilus influenzae 86-028NP]
          Length = 255

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 81/255 (31%), Positives = 126/255 (49%), Gaps = 14/255 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N                        +N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D   + DTL +AR+ +   RN+L++LC+R GI  S R+ HGALLD+ +L+DVY+ M 
Sbjct: 118 KTDDICLVTDTLQMARQMYLGKRNNLDALCERLGIDNSKRTLHGALLDAEILADVYLMMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTLGK 233
            G + +        +     ++KT   I             + T +EL  H + ++ + K
Sbjct: 178 GGQTNLFDEESVESEVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMNK 237

Query: 234 ----NAIWDRYISSN 244
               N +W++   +N
Sbjct: 238 KSGNNCLWEKRFGNN 252


>gi|148825595|ref|YP_001290348.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE]
 gi|229847255|ref|ZP_04467358.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1]
 gi|148715755|gb|ABQ97965.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE]
 gi|229809798|gb|EEP45521.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1]
          Length = 256

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 128/256 (50%), Gaps = 15/256 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N                        +N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ M 
Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177

Query: 176 VGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            G + +       ++   R  +E+       ++         + T +EL  H + ++ L 
Sbjct: 178 GGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMLN 237

Query: 233 K----NAIWDRYISSN 244
           K    N +WD+   +N
Sbjct: 238 KKSGNNCLWDKRFGNN 253


>gi|16272104|ref|NP_438306.1| DNA polymerase III subunit epsilon [Haemophilus influenzae Rd KW20]
 gi|1169396|sp|P43745|DPO3E_HAEIN RecName: Full=DNA polymerase III subunit epsilon
 gi|1573090|gb|AAC21808.1| DNA polymerase III, epsilon subunit (dnaQ) [Haemophilus influenzae
           Rd KW20]
          Length = 256

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 128/256 (50%), Gaps = 15/256 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T     +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPD-RPX 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N                        +N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ M 
Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177

Query: 176 VGGSQINFGFKTNED---RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            G + +    ++ E    R  +E+       ++         + T +EL  H + ++ + 
Sbjct: 178 GGQTNLFDEEESVESGVIRVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMN 237

Query: 233 K----NAIWDRYISSN 244
           K    N +WD+   +N
Sbjct: 238 KKSGNNCLWDKRFGNN 253


>gi|197103471|ref|YP_002128848.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1]
 gi|196476891|gb|ACG76419.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1]
          Length = 234

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 79/235 (33%), Positives = 124/235 (52%), Gaps = 7/235 (2%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG D    DR++EI  +E+ D+  T R F  ++ P  R    EA K+HG++
Sbjct: 3   REIVLDTETTGFDPLTGDRLVEIACLEIEDFIPTGRHFHAYIDP-CRDMPAEAEKVHGLS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             FL+ KP F +            +A  +AHNA FD  F+N EL   ++  L   R IDT
Sbjct: 62  TAFLRGKPKFEAPEIVEAFLDFVADAPIVAHNAAFDRAFVNYELGLCSRAELPDHRWIDT 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LCKR+ I+++ R KHGAL+D+ LL+ VY++ + GG +      
Sbjct: 122 LALAKQRFPGMHNSLDALCKRFKISLAEREKHGALIDTKLLAAVYLE-LRGGRERRLELT 180

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-AIWDRY 240
           +                S   R +PL    + EE   H   I+ + K+  +W ++
Sbjct: 181 S---SAAVSAVHAATRNSYGARPRPLAPLSSDEERAVHAAFIREVVKSEELWGKF 232


>gi|294675627|ref|YP_003576242.1| DNA polymerase III subunit epsilon [Rhodobacter capsulatus SB 1003]
 gi|294474447|gb|ADE83835.1| DNA polymerase III, epsilon subunit [Rhodobacter capsulatus SB
           1003]
          Length = 231

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 97/235 (41%), Positives = 143/235 (60%), Gaps = 6/235 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  +  RI+EIGAVEL+++  T RT+  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGFEPSEGHRIVEIGAVELMNHVPTGRTYHQYINPE-RAMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F +I  +F DF  + +++ + HNA FD+ F+NAEL  + K  L   R +D
Sbjct: 60  GDDFLRDKPKFGAIAQDFLDFIGD-DSKLVIHNAAFDMKFLNAELGWVQKPLLPMDRALD 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++ARRK P S   L++LC+R+GI  S R+ HGALLDS +L++VY++++  G Q  FG 
Sbjct: 119 TLAMARRKFPGSPATLDALCRRFGIDNSARTLHGALLDSEILAEVYLELIG-GRQPGFGL 177

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             N D    +   +        R  PL  R+T+ E + H   +  LG+ AIW R 
Sbjct: 178 --NIDPVQAKSAVSSTEWRPRPRPVPLPPRLTEAEAEAHAAFVAKLGEGAIWKRR 230


>gi|254361771|ref|ZP_04977906.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica PHL213]
 gi|261494027|ref|ZP_05990530.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261496213|ref|ZP_05992619.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|153093306|gb|EDN74302.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica PHL213]
 gi|261308165|gb|EEY09462.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261310193|gb|EEY11393.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 258

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 87/255 (34%), Positives = 137/255 (53%), Gaps = 17/255 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M  +  +R++V D ETTG++           IIEIGAVE+++   T RT+ V++ P  R+
Sbjct: 1   MTEEKIIRQVVLDTETTGMNMAGGPPQIGHNIIEIGAVEVINRRLTGRTYHVYIKPP-RE 59

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              EA+ +HGIT+EFL+DKP F+ I  EF DF        I HNA FDV F++ E   + 
Sbjct: 60  VDEEAIAVHGITNEFLQDKPVFAEIAEEFLDFIKGAE--LIIHNAPFDVAFMDQEFSYLP 117

Query: 115 KDPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             P        + D+L +ARR +P  RN+L++LC R GI  S R  HGALLD+ +L+DV+
Sbjct: 118 NPPAKTAEMCTVTDSLQMARRMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVF 177

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           + M  G   +  G +  E      + +   +  +L  D+ +  +   EE + H   ++ +
Sbjct: 178 LMMTGGQISL-LGEEETEVVSEVIDIEEEFSAIVLNADEAIILKANDEEEESHLALLKLI 236

Query: 232 GK----NAIWDRYIS 242
            K    N +W + ++
Sbjct: 237 EKKSKGNCLWTKALT 251


>gi|241758776|ref|ZP_04756889.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114]
 gi|241320984|gb|EER57197.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114]
          Length = 245

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 119/243 (48%), Gaps = 13/243 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           R+I+ D ETTGL  +  DR++E   +E+++   T+    +++ P  R    E   +    
Sbjct: 4   RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGLT 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
           I     K+ P F+ +  +  DF        I HNAKFDVGF+N E +R+    ++    +
Sbjct: 63  IEVLEAKNAPPFAQVGKQIADFIRGAE--LIIHNAKFDVGFLNMEFRRMGLPSIEELGCK 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M        
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQ---- 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           F     E     E K+TV      +  +    +   +EL  H+K +  LG+  +W +  +
Sbjct: 177 FDLMGGEAEEEGEVKQTVI-AETKRTSQLKVIKANADELAAHEKYLDDLGEACVWRKAET 235

Query: 243 SNQ 245
           S++
Sbjct: 236 SDE 238


>gi|145633563|ref|ZP_01789291.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655]
 gi|144985769|gb|EDJ92383.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655]
          Length = 256

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 127/256 (49%), Gaps = 15/256 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N                        +N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ M 
Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177

Query: 176 VGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            G + +       ++   R  +E+       ++         + T +EL  H + ++ L 
Sbjct: 178 GGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMLN 237

Query: 233 K----NAIWDRYISSN 244
           K    N +WD+   +N
Sbjct: 238 KKSGNNCLWDKRFGNN 253


>gi|309750446|gb|ADO80430.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2866]
          Length = 256

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 127/256 (49%), Gaps = 15/256 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N                        +N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ M 
Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177

Query: 176 VGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            G + +       ++   R  +E+       ++         + T +EL  H + ++ L 
Sbjct: 178 GGQTNLFDEEESVESEVIRVVQEKAAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMLN 237

Query: 233 K----NAIWDRYISSN 244
           K    N +WD+   +N
Sbjct: 238 KKSGNNCLWDKRFGNN 253


>gi|153876055|ref|ZP_02003569.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. PS]
 gi|152067479|gb|EDN66429.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. PS]
          Length = 239

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 90/239 (37%), Positives = 131/239 (54%), Gaps = 15/239 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  K   RIIEIG +E+L+   TN+ +  FL P+ RK+  EAL +HGI
Sbjct: 1   MRQIALDTETTGLSVKDGHRIIEIGCIEILNRRVTNKYYHQFLQPD-RKSDTEALAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122
           T EFLKDKP F  I ++F +F        + HNA FD+ FIN EL+ +++D        +
Sbjct: 60  THEFLKDKPRFREIVNDFMNFIKGAE--LLIHNAAFDMSFINRELELLHQDWQPLEHYCK 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I D+L +A+ +HP  +N+L++LCKRYG+  S+R  HGALLD+ +L++VY+ M        
Sbjct: 118 ITDSLVLAKERHPGQKNNLDALCKRYGVDNSNRQLHGALLDAEILAEVYLTMTAEQ---- 173

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237
                +E    +  K         KR        T+ EL  H + +  + K      +W
Sbjct: 174 VSLLASEGNNIEFLKNNTIKRISSKRASLTLITPTEGELQAHKQRLTAINKACGGKCLW 232


>gi|294085203|ref|YP_003551963.1| DNA polymerase III subunit epsilon [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664778|gb|ADE39879.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 255

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 84/260 (32%), Positives = 127/260 (48%), Gaps = 32/260 (12%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTG++ +   RIIEIG +ELL +  T     +++ P  R+    A+K+HG+
Sbjct: 1   MREIALDTETTGINPRDGHRIIEIGCLELLHHLPTGNKLHIYINPE-REIDEGAVKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T  FL DKP F+ I  EF  F          HNA FD+GF+NAEL R+++  L   R +D
Sbjct: 60  TSAFLADKPLFADIVDEFLAFIGGDQMV--IHNASFDMGFLNAELARLDRPVLPMDRAVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR+K P ++ +L++LC+R+ I   HR  HGAL+D+ LL+ VYI+++  G Q   G 
Sbjct: 118 TLMMARKKFPGAQANLDALCRRFEIDNGHRDLHGALIDADLLASVYIELLG-GKQPGLGL 176

Query: 186 KT--------------------------NEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                                       ++             +S            + E
Sbjct: 177 DNGTGSGARSRAGPAGSAGSLGSAGWSGSDHGAETANGTGHFAMSETAIRPIRTHAPSPE 236

Query: 220 ELDEHDKTIQTLGKNAIWDR 239
           E   HD  +  + +N IW +
Sbjct: 237 EQAAHDAFLDGM-ENPIWRQ 255


>gi|254560605|ref|YP_003067700.1| DNA polymerase III subunit epsilon [Methylobacterium extorquens
           DM4]
 gi|254267883|emb|CAX23749.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           DM4]
          Length = 236

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 89/239 (37%), Positives = 137/239 (57%), Gaps = 10/239 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG +++  DR+IEIG VEL+++ +T  TF   + P  R  S  A  +HGI+
Sbjct: 3   REIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGAFAVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSRI 123
           D  L DKP F+ +   F +F  +     + HNA FDVGF+N E           +    +
Sbjct: 62  DAMLADKPVFAEVVDAFLEFCGDAR--LVIHNAPFDVGFLNMEFARLGPAAPKAIALEDV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +ARRKHP + N+L++LC RYG+  + R KHGALLD+ +L++VY++++  G Q + 
Sbjct: 120 VDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELLG-GKQTSL 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           G    E    +         S     +P+ +R+T+ E   HD  +++LG NA+W  Y+ 
Sbjct: 179 GLSIAE--PAETVTLGALTDSGPVGPRPMRSRLTEGERLRHDSFVESLGTNAVWREYME 235


>gi|260583276|ref|ZP_05851052.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127]
 gi|260093683|gb|EEW77595.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127]
          Length = 256

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 15/256 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N                        +N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D   + DTL +AR+ +P  R++L++LC+R GI  S R+ HGALLD+ +L+DVY+ M 
Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRSNLDALCERLGIDNSKRTLHGALLDAEILADVYLMMT 177

Query: 176 VGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            G + +       ++   R  +E+       ++         + T +EL  H + ++ + 
Sbjct: 178 GGQTNLFDEEESVESEVIRVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMN 237

Query: 233 K----NAIWDRYISSN 244
           K    N +W++   +N
Sbjct: 238 KKSGNNCLWEKRFGNN 253


>gi|225075242|ref|ZP_03718441.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens
           NRL30031/H210]
 gi|224953417|gb|EEG34626.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens
           NRL30031/H210]
          Length = 245

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 123/241 (51%), Gaps = 9/241 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL  +  DR++E   +E+++   T+    +++ P  R    EA K+HG+T
Sbjct: 4   RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGLT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124
            E L+ K +              + AE I HNAKFDVGF+N E +R+    ++    ++ 
Sbjct: 63  IEVLEAKNAPPFAQVGKQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCKVT 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M        F 
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQ----FD 178

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
               E     E K+TV      +  +    +   +EL  H+K +  LG+  +W +  +S+
Sbjct: 179 LMGGEAEEEGEVKQTVI-AETKRTSQLKVVKANADELAAHEKYLDDLGEACVWRKAETSD 237

Query: 245 Q 245
           +
Sbjct: 238 E 238


>gi|329296922|ref|ZP_08254258.1| DNA polymerase III subunit epsilon [Plautia stali symbiont]
          Length = 237

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 80/242 (33%), Positives = 126/242 (52%), Gaps = 15/242 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F ++L P+ R  
Sbjct: 1   MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLV 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI DEFL DKP+F+ I  EF D+        + HNA FD+GF++ E   + +
Sbjct: 59  DPEAFGVHGIADEFLADKPTFAQIADEFLDYIRGAE--LVIHNASFDIGFMDYEFAMLQR 116

Query: 116 DP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           D        +I D+L++A +  P  RN L++LC R+ I  S R+ HGALLD+ +L++V++
Sbjct: 117 DIGKTETFCQITDSLAMASKMFPGKRNSLDALCNRFEIDNSKRTLHGALLDAGILAEVFL 176

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M    + + F  +  +    + E        +           + EE+  H+  +  + 
Sbjct: 177 TMTGCQTSLAFSMEGEQSNQVEGEHIQRI---VRPGAGLRVVSASDEEIVAHESRLDLVQ 233

Query: 233 KN 234
           K 
Sbjct: 234 KK 235


>gi|315497200|ref|YP_004086004.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB
           48]
 gi|315415212|gb|ADU11853.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB
           48]
          Length = 232

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 97/233 (41%), Positives = 140/233 (60%), Gaps = 8/233 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D K   R+IE+G +E+ D   T +TF  +  P  R   P+A+++HGI
Sbjct: 1   MRQIVLDTETTGIDPKKGHRLIEVGCIEIEDLLPTGKTFHHYFNPE-RLIEPDAIRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE + DKP F+ +   F DF  +  A  IAHNA FD GFIN EL+R+  DP DP R +D
Sbjct: 60  TDEMVADKPKFADLAQAFIDFVGD--APIIAHNASFDRGFINMELERLGLDPTDPDRWVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR K P   N L++LCKRY I+++ R KHGALLD+ LL+ VY++ + GG +     
Sbjct: 118 TLELARYKFPGMANSLDALCKRYNISLAERDKHGALLDARLLAGVYLE-LSGGKERGLDL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT-IQTLGKNAIW 237
           K +      E+   +  ++  +R +PL + I  EE + H    ++ L    +W
Sbjct: 177 KMH--GMVSEDGTEIRVMNHGQRPRPLPSHIHPEEAEAHKAFCLKYLKDQNMW 227


>gi|145637904|ref|ZP_01793548.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH]
 gi|145268904|gb|EDK08863.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH]
          Length = 256

 Score =  132 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 127/256 (49%), Gaps = 15/256 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N                        +N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ M 
Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177

Query: 176 VGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            G + +       ++   R  +E+       ++         + T +EL  H + ++ L 
Sbjct: 178 GGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMLN 237

Query: 233 K----NAIWDRYISSN 244
           K    N +WD+   +N
Sbjct: 238 KKSGNNCLWDKRFGNN 253


>gi|254499192|ref|ZP_05111872.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12]
 gi|254351582|gb|EET10437.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12]
          Length = 232

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 113/230 (49%), Gaps = 6/230 (2%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+   +  R+IEIG VEL+D   T R F V+L P  R     A ++HGI
Sbjct: 1   MRQIVLDTETTGIGHEQGHRVIEIGCVELIDRKLTGRHFHVYLNPE-RLVDEGAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +DEFL+DKP F+   SEF  F                         +  K   D   + D
Sbjct: 60  SDEFLQDKPLFADKVSEFLQFVGGAELIIHNAAFDMGFLNSELRHVQWKKKLEDYCDVFD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+ AR K P  RN L++LCKR+GI   +R  HGALLD+ +L+ VY+ M  G S      
Sbjct: 120 TLTYARDKFPGQRNSLDALCKRFGIDHFNRQLHGALLDAEILAFVYLAMTGGQSS----L 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
             + +         V  I+ L+   P+       ELD+H   ++ L K +
Sbjct: 176 FADVEENANNTTVKVQEIAALRLANPIVVLAEANELDQHQIFVEFLTKKS 225


>gi|94502173|ref|ZP_01308671.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65]
 gi|94425698|gb|EAT10708.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65]
          Length = 237

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 117/229 (51%), Gaps = 3/229 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR++V D ETTG+     RIIEIG VEL+    T R +  ++ P  R+  PEA+++HGIT
Sbjct: 1   MRQVVLDTETTGIG-DGHRIIEIGCVELVGRKLTGRHYHQYINPQ-REVDPEAMEVHGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFL DKP F+ + +EF DF N                 +            +   ++DT
Sbjct: 59  DEFLADKPVFAQVANEFLDFINGAELVIHNAPFDVGFMDMEFAKLSNFPKTAEVCGVLDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++AR+ +P  RN L++LC+R GI  SHR  HGALLDS +L+DVY+ M  G + ++    
Sbjct: 119 LTLARKMYPGQRNSLDALCRRLGIDNSHRELHGALLDSEILADVYLLMTGGQTALSLA-S 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            +       E      +   +        +T +E  +H + ++ L   A
Sbjct: 178 EDASTEGSHELSVKVLVDQSQVANLPSWGVTDDEARQHQEYLELLATKA 226


>gi|89067418|ref|ZP_01154931.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola granulosus HTCC2516]
 gi|89046987|gb|EAR53041.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola granulosus HTCC2516]
          Length = 230

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 95/234 (40%), Positives = 139/234 (59%), Gaps = 8/234 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL ++  T RT+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPEDGDRIVEIGAVELDNHMPTGRTYHQYINPQ-RAMPREAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL DKP F+ I   F DF  +     + HNA FD+ F+NAEL   N   L  S+ +D
Sbjct: 60  GDEFLADKPVFARIGRAFLDFVGDAR--LVIHNASFDMKFLNAELGWANLPRLPDSQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+++AR K P S   L++LC+R+GI  S R+ HGALLDS +L++VY++++  G Q +F  
Sbjct: 118 TVAMARSKFPGSPVSLDALCRRFGIDNSARTYHGALLDSEILAEVYLELIG-GRQPDFAL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             ++    +  +    +     R +PL  RIT  E   H   I+ LG+ ++W R
Sbjct: 177 SVSQVGGGEAGQD---DWRPRPRPEPLPPRITAAEAAAHQAFIEKLGEASLWAR 227


>gi|82702745|ref|YP_412311.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
 gi|82410810|gb|ABB74919.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 234

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 110/243 (45%), Gaps = 15/243 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL+ K   RIIEIGAVE++    T R F  +L P  R+    AL++HGI
Sbjct: 1   MRQIFIDTETTGLEPKLGHRIIEIGAVEMMSRRLTGRRFHHYLNPE-REIEEGALQVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DK  F+ +  E  +F +                     L  +         + D
Sbjct: 60  TSEFLLDKRKFADVVHELLEFIDGAELIMHNAAFDVAFLDHELGLANLPALCECCHSVTD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +A+   P  RN L++LC+RY +  S R+ HGALLD+ LL++VY+ M  G   +    
Sbjct: 120 TLKMAKELFPGKRNSLDALCERYEVDNSRRALHGALLDAELLAEVYLAMTRGQESLLMEL 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRYI 241
           +             +           +    + EEL+ H + ++ + K      +W R  
Sbjct: 180 EAPSPLDLDISLHDLQ---------LVVLPASAEELEAHARQLEMIEKESKGKCLWMRLD 230

Query: 242 SSN 244
            + 
Sbjct: 231 PAE 233


>gi|325578763|ref|ZP_08148810.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159587|gb|EGC71719.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 253

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 6/233 (2%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ P+ R   P+A+K+
Sbjct: 6   RQIVLDTETTGMNQIGAHYEGHCIIEIGAVEMINRKYTGNNFHIYIKPD-RLVDPDAIKV 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGITDE L DKP F +I  +F ++                          ++    D   
Sbjct: 65  HGITDEMLADKPDFKTIAQDFIEYIRGAELLIHNAPFDVGFMDYEFRKLGLDIKTTDICL 124

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL +AR+ +P  RN L++LC R GI  S R+ HGALLD+ +L+DVY+ M  G + + 
Sbjct: 125 VTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLSMTGGQTSLF 184

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
                +               ++         + T +EL  H   I+ + K +
Sbjct: 185 DEEHADSSIIQTTANVQDLQSAVNFSQNLKVLQPTDDELQAHLDFIKLVNKKS 237


>gi|88813349|ref|ZP_01128587.1| DNA polymerase III, epsilon subunit [Nitrococcus mobilis Nb-231]
 gi|88789407|gb|EAR20536.1| DNA polymerase III, epsilon subunit [Nitrococcus mobilis Nb-231]
          Length = 245

 Score =  131 bits (329), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 87/241 (36%), Positives = 125/241 (51%), Gaps = 13/241 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+     R+IEIG  EL     + RTF  +L P+ R+  P A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPADGHRVIEIGCYELCYRRASGRTFHHYLNPD-REVEPGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122
           T+EFL DKP F  I ++F +F  +     I HNA FDVGF++ E  R+        D  +
Sbjct: 60  TNEFLADKPRFCDIATDFIEFIRDAE--LIIHNAPFDVGFLDYEFSRLTGSWGRLADYCQ 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR +HP  RN L++LC RY +  + RS HGALLD+ LL++VY+ M     Q  
Sbjct: 118 VTDTLALARERHPGQRNSLDALCTRYAVDNAQRSLHGALLDAQLLAEVYLLMTG--GQTA 175

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
              ++                    R +    R +  E  EH   +  L    G   +W 
Sbjct: 176 LSLESGAGLSADLALVGGVRRLDPARPRLPVVRASSAEQAEHRHWLDELDQAVGGCCVWR 235

Query: 239 R 239
           +
Sbjct: 236 Q 236


>gi|223041838|ref|ZP_03612026.1| DNA polymerase III subunit epsilon [Actinobacillus minor 202]
 gi|223017331|gb|EEF15754.1| DNA polymerase III subunit epsilon [Actinobacillus minor 202]
          Length = 255

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 88/252 (34%), Positives = 133/252 (52%), Gaps = 17/252 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M+ +   R++V D ETTG++          IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MLEQEIHRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKPSF+ I  EF  F        + HNA FDVGF++ E   +  
Sbjct: 60  EEEAIKVHGITNEFLQDKPSFAEIVDEFVAFIKGAE--LVIHNAPFDVGFMDHEFSFLAN 117

Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P        + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCTVTDSLALARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M     QI    +   D   + +               +  +  + EL+ H   ++ L 
Sbjct: 178 MMTG--GQIALLAEEEHDENPQVDLLEEGPKIAFDTSNSVILKADESELEAHQLFLKLLY 235

Query: 233 K----NAIWDRY 240
           K    N IW + 
Sbjct: 236 KKSKQNCIWGKR 247


>gi|145639808|ref|ZP_01795410.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII]
 gi|145271176|gb|EDK11091.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII]
          Length = 256

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 127/256 (49%), Gaps = 15/256 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N                        +N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ M 
Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177

Query: 176 VGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            G + +       ++   R  +E+       ++         + T +EL  H + ++ + 
Sbjct: 178 GGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMMN 237

Query: 233 K----NAIWDRYISSN 244
           K    N +WD+   +N
Sbjct: 238 KKSGNNCLWDKRFGNN 253


>gi|91223500|ref|ZP_01258765.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|254228411|ref|ZP_04921837.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25]
 gi|262393546|ref|YP_003285400.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|269966277|ref|ZP_06180366.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
 gi|91191586|gb|EAS77850.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|151938999|gb|EDN57831.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25]
 gi|262337140|gb|ACY50935.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|269829192|gb|EEZ83437.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
          Length = 240

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 91/241 (37%), Positives = 137/241 (56%), Gaps = 20/241 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R+  PEA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPEAVE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118
           +HGITDEFL DKP ++S+  EF +F        +AHNA FD GF++ E            
Sbjct: 70  VHGITDEFLVDKPEYASVHQEFLEFIKGAE--LVAHNAPFDTGFMDYEFGMLDPNIGKTD 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLFMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           + + F          K+E        +  R      R + +EL+ H K ++ +  + IW 
Sbjct: 188 TSLEFN-------ANKQEGGVETIRRIEGRKALKVLRASADELEAHQKRLELVN-DCIWH 239

Query: 239 R 239
           +
Sbjct: 240 Q 240


>gi|148358915|ref|YP_001250122.1| DNA polymerase III subunit epsilon [Legionella pneumophila str.
           Corby]
 gi|296106963|ref|YP_003618663.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280688|gb|ABQ54776.1| DNA polymerase III, epsilon subunit [Legionella pneumophila str.
           Corby]
 gi|295648864|gb|ADG24711.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99
           Alcoy]
          Length = 233

 Score =  131 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 81/230 (35%), Positives = 118/230 (51%), Gaps = 6/230 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTG+  +   R+IEIG +EL+D   T + F ++L P  R+    A ++HGI
Sbjct: 1   MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL+DKP F  I +EF  F                      +  + NK   D  RI+D
Sbjct: 60  STEFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR KHP  RN L++LCKRY I   +R  HGALLD+ +L+ VY+ M  G S      
Sbjct: 120 TLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSS----L 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            T  +      K     I  L   KP+  +  +EEL +H   ++ + K +
Sbjct: 176 FTEVESSMSHSKIKTQEIKSLSLKKPVIMKANEEELIQHQSFVEFISKKS 225


>gi|270156747|ref|ZP_06185404.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968]
 gi|289164806|ref|YP_003454944.1| DNA polymerase III, epsilon chain [Legionella longbeachae NSW150]
 gi|269988772|gb|EEZ95026.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968]
 gi|288857979|emb|CBJ11839.1| putative DNA polymerase III, epsilon chain [Legionella longbeachae
           NSW150]
          Length = 233

 Score =  131 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 80/230 (34%), Positives = 118/230 (51%), Gaps = 6/230 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTG+  +   R+IEIG VEL+D   T   F V+L P  R     A ++HGI
Sbjct: 1   MRQVVLDTETTGIGHEHGHRVIEIGCVELIDRKLTGNHFHVYLNPQ-RLVDEGAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++EFL+DKP F+ +  +FW F +                    +L   NK      +I D
Sbjct: 60  SNEFLQDKPLFADVAEKFWRFISGAELIIHNAPFDVGFLNSELQLINWNKKLEVYCKITD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR K+P  RN L++LCKRYGI   +R  HGALLD+ +L+ VY+ M  G + +    
Sbjct: 120 TLVLAREKYPGQRNSLDALCKRYGIDHFNRELHGALLDAEILAFVYLAMTGGQTSLFAEV 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           +        + ++TV     L  +  +    + EEL+ H   I  L K +
Sbjct: 180 EETSLHVNSKSQETVA----LHLENSVVLPASAEELESHQLFIDFLHKKS 225


>gi|94676582|ref|YP_588911.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
 gi|94219732|gb|ABF13891.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
          Length = 240

 Score =  131 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 81/239 (33%), Positives = 120/239 (50%), Gaps = 10/239 (4%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV DIETTG++         RIIEIGAVE+++   T + F V+L P  R    EA K+
Sbjct: 3   RQIVLDIETTGINKLGVHYYGHRIIEIGAVEIINRRITGKNFHVYLNPE-RFIDQEAFKI 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI++ FLKDKP+F+ +  +   F ++                   +L   +       +
Sbjct: 62  HGISNNFLKDKPTFAQVADKLITFISQSELVIHHAPFDIGFIDYEFKLLNRSMISKTFVQ 121

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL +AR+  P  RN L++LC RY I   HR+KHGALLD+ +L+++Y+ M  G + IN
Sbjct: 122 VTDTLLLARKIFPGKRNSLDALCNRYHIKNIHRTKHGALLDAKILAEIYLIMTGGQTSIN 181

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238
           F   T E    ++ K       L   DK        +EL EH   +  + K     +W 
Sbjct: 182 FNL-TQESNIEQKYKGKNIYFPLSHEDKLKVIYANNKELSEHRNILDRIEKQNSKCLWK 239


>gi|149927491|ref|ZP_01915745.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
 gi|149823764|gb|EDM82990.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
          Length = 240

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 112/245 (45%), Gaps = 15/245 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTGL+ +   RIIEIG +E+     T+  F  ++ P  R+    A ++HGI
Sbjct: 1   MRYVVLDTETTGLEVRQGHRIIEIGCIEVNGRQVTDHHFHQYINPE-REVDEGAFQVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +DE L DKP F  I  +F DF           +          E   + K       +ID
Sbjct: 60  SDEMLADKPKFKQIAKDFLDFVQGSTLIIHNASFDIGFLDGELERLGLGKMADYVDGVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L +AR   P  RN+L++LC R G+  +HR  HGALLDS +L++VY+ M  G   +    
Sbjct: 120 SLGMAREMFPGKRNNLDALCDRLGVNNAHRQLHGALLDSQILAEVYLAMTRGQDSLVIDL 179

Query: 186 KT-NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDRY 240
              ++D   +  K +  N+   +  +             H   +  + K A    +W + 
Sbjct: 180 NAQHDDDGVERIKLSALNLPEPEPTEEELV--------LHQAYLADIEKAAKGPSVWSKI 231

Query: 241 ISSNQ 245
             + +
Sbjct: 232 SQATE 236


>gi|300703774|ref|YP_003745376.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum
           CFBP2957]
 gi|299071437|emb|CBJ42756.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum
           CFBP2957]
          Length = 242

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 112/238 (47%), Gaps = 11/238 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR+IEIG VEL++   T R    ++ P  R+    A+ +HGI
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+EF+ DKP F+ + +E  D+     A             +      +          ID
Sbjct: 60  TNEFVADKPKFAEVVAEIRDYVQGAEAIIHNAAFDLGFLDMEFRRLGLPSFREHLDGHID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  ARR  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G + +    
Sbjct: 120 TLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDM 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239
               +    E          L   +      T+ E   H   ++ + K      +W R
Sbjct: 180 LEGGETAATEAAAVD-----LSGLELPILLATEVEATAHATVLKEIDKASGGKTVWSR 232


>gi|153840553|ref|ZP_01993220.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149745784|gb|EDM56914.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 229

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 93/239 (38%), Positives = 138/239 (57%), Gaps = 20/239 (8%)

Query: 10  IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D ETTG++ +        RIIEIGAVE+++   T R F V++ P+ R+  PEA+++H
Sbjct: 2   VVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPEAIQVH 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDP 120
           GITDEFL DKP ++SI  EF DF        +AHNA FD GF++ E +    I     D 
Sbjct: 61  GITDEFLVDKPEYASIHQEFLDFIKGAE--LVAHNAPFDTGFMDYEFEKLDPIIGKTDDY 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G + 
Sbjct: 119 CKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 178

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
           + F          K+E        +  R      R T +EL+ H K ++ +  + IW +
Sbjct: 179 LEFN-------ANKQEGGVETIRRIEGRKALKVLRATADELEAHQKRLELVN-DCIWHQ 229


>gi|261364618|ref|ZP_05977501.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996]
 gi|288567207|gb|EFC88767.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996]
          Length = 239

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 98/235 (41%), Gaps = 8/235 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           R+I+ D ETTGL ++  DR++E   +E+++   T R   +++ P  R    E   +    
Sbjct: 3   RQIILDTETTGLYAENGDRLVEFAGLEMVNRQMTGRFLHLYVHPQ-RDMPEEAARVHGLT 61

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I     K+ P F+ +  E  +F                   +      +         I 
Sbjct: 62  IDVLEEKNAPPFAKVGQEISEFIRGAELIIHNAKFDVGFLNMEFRRMGLPSVEELGCEIT 121

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR   P  +  L++LC R  I  S R  HGAL+D  LL +VY+ M        F 
Sbjct: 122 DTLAMAREMFPGQKASLDALCNRLSIDRSKRVLHGALIDCELLGEVYLAMTRQQ----FD 177

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
               E     +E K V      +       +   EEL+EH+K +  LG+  IW +
Sbjct: 178 LMGGESEEETKEDKPVIIAETKRSSSLKVIKANSEELEEHEKYLDALGEPCIWRQ 232


>gi|261380159|ref|ZP_05984732.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703]
 gi|284796997|gb|EFC52344.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703]
          Length = 245

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 13/243 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           R+I+ D ETTGL  +  DR++E   +E+++   T+    +++ P  R    E   +    
Sbjct: 4   RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGLT 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
           I     K+ P F+ +  +  DF        I HNAKFDVGF+N E +R+    ++    +
Sbjct: 63  IEVLEAKNAPPFAQVGKQIADFIRGAE--LIIHNAKFDVGFLNMEFRRMGLPSIEELGCK 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M        
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQ---- 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           F     E     E K+TV      +  +    +   +EL  H+K +  LG+  +W +  +
Sbjct: 177 FDLMGGEAEEEGEVKQTVI-AETKRTSQLKVIKANADELAAHEKYLDDLGEACVWRKAET 235

Query: 243 SNQ 245
            ++
Sbjct: 236 PDE 238


>gi|261377592|ref|ZP_05982165.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685]
 gi|269146340|gb|EEZ72758.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685]
          Length = 244

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 103/248 (41%), Gaps = 13/248 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE- 58
           MI+    R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    E 
Sbjct: 1   MIK----RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYIHPE-RDMPEEA 55

Query: 59  -ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             +    I     K+ P F+ +  +  DF                   +      +    
Sbjct: 56  ARVHGLTIEVLEGKNAPPFARVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVE 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                I DTLS+AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M   
Sbjct: 116 ELGCTITDTLSMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQ 175

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
              +       E        K V +  +    K    +  + EL  H++ +  LG++ IW
Sbjct: 176 QFDL-----MGEAEEEGPAAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGESCIW 230

Query: 238 DRYISSNQ 245
            +    ++
Sbjct: 231 RKEAVPSE 238


>gi|71083046|ref|YP_265765.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762529|ref|ZP_01264494.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062159|gb|AAZ21162.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718331|gb|EAS84981.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002]
          Length = 223

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 125/230 (54%), Gaps = 12/230 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M++++ D ETTGL  +   RI+EIG +EL +   T   F  +L P  RK S +AL++HG 
Sbjct: 1   MKEVILDTETTGLSVRDGHRIVEIGCIELENLIPTKNRFHCYLNPE-RKVSEKALEVHGY 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDEFL     F  I  EF  F   +    + HNA+FD+  +N EL  + K+ L+   ++D
Sbjct: 60  TDEFLSTHKKFGDIVDEFLVFIENKR--LVIHNAEFDLSHLNNELSLLGKEKLNSENVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR K P S   L++LCKRY I  S R++H AL+D  LL+ VYI ++    +    F
Sbjct: 118 TLALARDKFPGSPISLDALCKRYRIDNSKRTQHTALIDCDLLAKVYINLL-DQKEPTLNF 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-LGKN 234
           K  +       +K + N +   R      + ++ EL  H + ++  L KN
Sbjct: 177 KNED------NEKIIINSNDTNRYYKKVVKPSEAELKLHKEYLKNSLKKN 220


>gi|255019824|ref|ZP_05291900.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
 gi|254970753|gb|EET28239.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
          Length = 243

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 94/246 (38%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTG+D +   R+IEIGAVEL+D   T   +Q +L P GR + PEAL++HGI
Sbjct: 1   MRQVVLDTETTGIDPRQGHRVIEIGAVELVDREITEGRYQQYLNP-GRSSDPEALRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL D+P F+ I  +F  F  +     I HNA FD+ F+NAEL+R+ +  L      D
Sbjct: 60  RDDFLADQPDFADIVEDFLAFLGDAE--LIIHNAPFDLAFLNAELERVGRPALQNPVR-D 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  ARR+HP  +NDL++LC+RYG+  S R +HGALLD  +L++VY++M  G   +    
Sbjct: 117 TLVEARRRHPGQKNDLDALCRRYGVDNSRRQQHGALLDCEILAEVYLRMSGGQLGMRLAA 176

Query: 186 KTNEDRFFKEEKK------TVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                     E+            +  +R      R    EL  H+  ++ LG  A+W  
Sbjct: 177 DREAQGPSVAEEGQAGAPFQAHAQAADRRRPLRLRRADAAELAAHEAYLRGLGGKALWRE 236

Query: 240 YISSNQ 245
                Q
Sbjct: 237 ESPGEQ 242


>gi|170750672|ref|YP_001756932.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657194|gb|ACB26249.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans
           JCM 2831]
          Length = 240

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 97/242 (40%), Positives = 137/242 (56%), Gaps = 10/242 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG ++K  DR+IEIGAVELL++  T RTF  +  P  R  S  A  +HG++
Sbjct: 3   REIVLDTETTGTEAKGGDRLIEIGAVELLNHIPTGRTFHRYCNPQ-RPVSEGAFNVHGLS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSRI 123
           D FL DKP F+ I  E   F  +     + HNA FDVGF+N E  R       P+    +
Sbjct: 62  DAFLADKPVFAEIVGELLAFLADGR--LVIHNAPFDVGFLNMEYARLGANAPPPIQLEDV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +ARRKHP + N+L++LC RYGI  + R+KHGALLD+ +L++VY++++  G Q + 
Sbjct: 120 VDTLPMARRKHPGAANNLDALCARYGIDNTRRTKHGALLDAQILAEVYVELLG-GKQTSL 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
           G    E          +         +P  +R+T  E   HD    +LG  AIW  YI +
Sbjct: 179 GLLEAEKAAPAAGSTALAAAPAA--PRPYRSRLTDAERARHDSFRASLGPAAIWADYIGA 236

Query: 244 NQ 245
           + 
Sbjct: 237 DD 238


>gi|124267443|ref|YP_001021447.1| DNA polymerase III subunit epsilon [Methylibium petroleiphilum PM1]
 gi|124260218|gb|ABM95212.1| DNA polymerase III, epsilon subunit [Methylibium petroleiphilum
           PM1]
          Length = 234

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 12/236 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I  D ETTGL  +  DRIIEIG VE+L    +      +L P  R+N  +A+K+HG+T
Sbjct: 3   RQIFLDTETTGLSPENGDRIIEIGCVEMLSRRLSGNNRHFYLNPE-RRNHEDAVKIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFL DKP F+ +  E  ++                      +  +  +       + D+
Sbjct: 62  DEFLADKPKFAVVADELMEYLAGAEIIIHNAAFDVGFLDAELKRLQRPRFAEQVGAVTDS 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++AR   P   N L++LCKR  +  + R+ HGALLD+ LL++VYI+M  G + +     
Sbjct: 122 LTMAREMFPGKSNSLDALCKRLEVDNASRTLHGALLDAGLLAEVYIRMTRGQNSLVIDAG 181

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                        +   +            + +E   H+  +  L K      +W 
Sbjct: 182 AASGGAIAVADIDLRQFA------LPVIEPSDDERQAHEAVLAELDKVSGGKTLWR 231


>gi|313668102|ref|YP_004048386.1| DNA polymerase III, epsilon chain [Neisseria lactamica ST-640]
 gi|313005564|emb|CBN87000.1| DNA polymerase III, epsilon chain [Neisseria lactamica 020-06]
          Length = 244

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 102/241 (42%), Gaps = 9/241 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    E   +    
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I     K+ P F+ +  +  DF                   +      +         + 
Sbjct: 63  IQVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M        F 
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQ----FD 178

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
               +++     +  V    + +  K    +  + EL  H+K +  LG++ IW +    +
Sbjct: 179 LMGEDEKEEPAAQPAVS-AEMKRSAKLKVVKADEAELAAHEKYLDGLGESCIWRKEAVPS 237

Query: 245 Q 245
           +
Sbjct: 238 E 238


>gi|54310042|ref|YP_131062.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9]
 gi|46914481|emb|CAG21260.1| Putative DNA polymerase III, epsilon subunit [Photobacterium
           profundum SS9]
          Length = 246

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 83/248 (33%), Positives = 135/248 (54%), Gaps = 16/248 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R IV D ETTG++      +   IIEIGAVE+++   T  +F V++ P+ R   
Sbjct: 5   MKATNQRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEIINRKLTGNSFHVYIKPD-RTIE 63

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            EA+ +HGITDEFL  KP +  +  EF +F        +AHNA FDVGF++ E +++N +
Sbjct: 64  VEAIGVHGITDEFLIGKPVYKEVHDEFLEFIKGAE--LVAHNAPFDVGFMDYEFRKLNPN 121

Query: 117 P---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 122 IGKTEDFCKVTDTLAMAKKIFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLL 181

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           M  G + +     + E        ++        R        + +E++ H+  +  + K
Sbjct: 182 MTGGQTSLAL---SAEREDRDAGTESEIKRIASGRKLLKVLHASADEIEAHESRLDIISK 238

Query: 234 NA--IWDR 239
            +  +W +
Sbjct: 239 KSDVMWRQ 246


>gi|88606785|ref|YP_505310.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ]
 gi|88597848|gb|ABD43318.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ]
          Length = 244

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 83/234 (35%), Positives = 129/234 (55%), Gaps = 10/234 (4%)

Query: 6   KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K+R+IV D ETTGLD+   DRIIEIG VEL+DY  T R F  ++ P  R  S  A ++HG
Sbjct: 2   KVREIVLDTETTGLDADGGDRIIEIGCVELVDYVMTGRVFHKYIDPE-RDISVAATRVHG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT E L   P F+ +  E  DF  +  +  + HNA+FD+ F+  E++R++      + I+
Sbjct: 61  ITRESLIGMPKFAEVADELLDFLQD--SALVIHNARFDMRFLEVEIERLSNKRAITNTIV 118

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINF 183
           DTL +AR+K P     L++LCKR+ I+   R  HGAL D+ LL+ VY++++     ++ F
Sbjct: 119 DTLEMARKKFPGMPASLDALCKRFNISTQERKFHGALKDATLLARVYVELLEALQRRLVF 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
             + ++ +           +    R       ++ EE   H +T+  + KN IW
Sbjct: 179 SQEGDDSKQVSVIHDKAKRVVYPAR----TFTLSSEEKRLHRQTVSKM-KNPIW 227


>gi|153835770|ref|ZP_01988437.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01]
 gi|156975479|ref|YP_001446386.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116]
 gi|148867537|gb|EDL66875.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01]
 gi|156527073|gb|ABU72159.1| hypothetical protein VIBHAR_03210 [Vibrio harveyi ATCC BAA-1116]
          Length = 238

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 93/239 (38%), Positives = 139/239 (58%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R+  P+A+ 
Sbjct: 11  RIVVLDTETTGMNLEGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPDAIG 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118
           +HGITDEFL DKP +S++  EF DF        +AHNA FD GF++ E + +N       
Sbjct: 70  VHGITDEFLVDKPEYSAVHQEFLDFIKGAE--LVAHNAPFDTGFMDYEFEMLNPSIGKTD 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M    
Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTG-- 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            Q +  F  N+     E  + V       R      R T +E++ H K ++ +  ++IW
Sbjct: 186 GQTSLEFNANKKDGEAEGIRRVEG-----RKALKVLRATADEVEAHQKRLELVN-DSIW 238


>gi|298369358|ref|ZP_06980676.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298283361|gb|EFI24848.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 240

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 15/242 (6%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           R+I+ D ETTGL ++  DR++E   +E+++   T+    +++ P  R    E   +    
Sbjct: 4   RQIILDTETTGLYAEGGDRLVEFAGLEMINRQMTDNNLHLYIHPE-RDMPEEAAKVHGLT 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
           I     K+ P F+ +  +  DF  +     I HNAKFD+GF+N E +R+    ++     
Sbjct: 63  IEVLEEKNAPPFAEVGRQIADFIRDAE--LIIHNAKFDIGFLNMEFRRMGLPSIEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R  +  S R  HGAL+D  LL +VY+ M        
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRLSVDRSKRVLHGALIDCELLGEVYLAMTRQQ---- 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
             F        ++E+     I+  KR       +   EEL  H++ +  LG+  +W +  
Sbjct: 177 --FDLMGGEKEEDEEVKPVIIAETKRPAHLKVIKANAEELAAHEQYLDGLGEACLWRKAE 234

Query: 242 SS 243
           ++
Sbjct: 235 TA 236


>gi|269958788|ref|YP_003328576.1| DNA polymerase III, epsilon subunit [Anaplasma centrale str.
           Israel]
 gi|269848618|gb|ACZ49262.1| DNA polymerase III, epsilon subunit [Anaplasma centrale str.
           Israel]
          Length = 232

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 90/239 (37%), Positives = 135/239 (56%), Gaps = 11/239 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGLD+   DRIIEIG VEL+D+  T + F  ++ P  R     A K+HGIT
Sbjct: 4   REIVLDTETTGLDAASGDRIIEIGCVELVDFVMTGQVFHKYINPE-RDIPIAATKIHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +K+ P F+ +  +F +F  +  +  + HNA FD+ FI  E++RI K  L  + ++DT
Sbjct: 63  TDMVKNMPKFAEMADQFLNFVQD--SVLVIHNAGFDLKFIETEMERIGKTKL-YNPVVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +ARRK P     L++LCKR+ I+ S R  HGAL D+ LL+ VY+++   G Q + GF 
Sbjct: 120 LEVARRKFPGMPASLDALCKRFDISTSSRRFHGALKDATLLARVYVELCG-GIQRSLGFV 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245
             E     +E     N S      P    I+  E   H ++I  + K+ IW+ Y+ ++ 
Sbjct: 179 DGELNQSTKEN----NASKPVLQAPRTFTISDLEHKLHMESISKM-KDPIWNMYLKTSD 232


>gi|309378712|emb|CBX22662.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 244

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 102/241 (42%), Gaps = 9/241 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    E   +    
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I     K+ P F+ +  +  DF                   +      +         + 
Sbjct: 63  IEVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M        F 
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQ----FD 178

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
               +++     +  V    + +  K    +  + EL  H+K +  LG++ IW +    +
Sbjct: 179 LMGEDEKEEPAAQPAVS-AEMKRSAKLKVVKADEAELAAHEKYLDGLGESCIWRKEAVPS 237

Query: 245 Q 245
           +
Sbjct: 238 E 238


>gi|254522635|ref|ZP_05134690.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
 gi|219720226|gb|EED38751.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
          Length = 243

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 89/239 (37%), Positives = 126/239 (52%), Gaps = 13/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +RI+EIG VEL     T   +  ++ P+  +    A ++ G+
Sbjct: 1   MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDC-EFEQGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           T EFL DKP F+ I  EF  F +      I HNA FD+GF++ EL           D   
Sbjct: 60  TLEFLDDKPGFAQIADEFLAFIDGAE--LIIHNAAFDLGFLDNELSLLGPQYGKITDRCT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDTL++AR + P  RN L++LCKR G+  SHR+ HG LLD+ +L DVYI +  G  +I 
Sbjct: 118 VIDTLAMARERFPGQRNSLDALCKRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           FG    +        +      LL R +      T  EL+ H   ++ L K    A+WD
Sbjct: 178 FGLGDEDGGGAGAALQAFDASKLLPRPR---VMATPSELEAHAARLERLRKKAGHALWD 233


>gi|269960617|ref|ZP_06174989.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3]
 gi|269834694|gb|EEZ88781.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3]
          Length = 238

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 139/239 (58%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RI+EIGAVE+++   T R F V+L P+ R+  P+A+ 
Sbjct: 11  RIVVLDTETTGMNLEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYLKPD-REIQPDAIG 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118
           +HGITDEFL DKP +S++  EF DF        +AHNA FD GF++ E + +N       
Sbjct: 70  VHGITDEFLVDKPEYSAVHQEFLDFIKGAE--LVAHNAPFDTGFMDYEFEMLNPSIGKTD 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M    
Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTG-- 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            Q +  F  N+     E  + V       R      R T +E++ H K ++ +  ++IW
Sbjct: 186 GQTSLEFNANKKDGEAEGIRRVEG-----RKALKVLRATADEVEAHQKRLELVN-DSIW 238


>gi|325983345|ref|YP_004295747.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
 gi|325532864|gb|ADZ27585.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
          Length = 245

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 113/243 (46%), Gaps = 14/243 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ K   RI+EI AVEL +   T   F  +L P  R++   AL++HG+
Sbjct: 1   MRQIVLDTETTGLECKLGHRIVEIAAVELCNRQFTGSHFHYYLNPE-RESDEGALQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL+DK  F  I  EF +F ++                    L  +       S+I D
Sbjct: 60  TMEFLQDKAKFYEISREFLNFISDAELIIHNAPFDVGFLNHELGLCNLKALDNYCSQITD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +A+  HP  RN+L++LC+RY I  S R  HGALLD+ LL++VY+ M  G   +    
Sbjct: 120 TLKLAKELHPGKRNNLDALCERYNIDNSKRKLHGALLDAELLAEVYLAMTRGQESLLIEL 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWDRYI 241
              E     +      +              T EE   H   ++ +        +W+ + 
Sbjct: 180 DYVESVQPSQIDLDNSD--------LRIIAATAEEKARHCGILEEIARASDNKCLWNNFE 231

Query: 242 SSN 244
            ++
Sbjct: 232 IAD 234


>gi|90407281|ref|ZP_01215467.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3]
 gi|90311564|gb|EAS39663.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3]
          Length = 236

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 89/245 (36%), Positives = 133/245 (54%), Gaps = 19/245 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M      R++V D ETTG++         RIIEIG VE+++   T R + V+L P+ R+ 
Sbjct: 1   MNTSKVNRQVVLDTETTGMNKDGTIYLGHRIIEIGCVEVINRRLTGRHYHVYLQPD-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--- 112
            PEA+ +HGITDEFL+DKP F+ I  +F DF    +   + HNA FDVGF++ E +    
Sbjct: 60  DPEAVTVHGITDEFLQDKPHFADIADDFIDFIRGAD--LVIHNAPFDVGFMDQEFRFLNK 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             +   + + + DTL +A++  P  RN+L+ LC RYGI   HR+ HGALLD+ +L+DVY+
Sbjct: 118 KTQPTEEIATVTDTLVMAKKMFPGKRNNLDILCDRYGINTKHRTLHGALLDAEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G S++N     +       + +T  N            R T  E   H + +Q + 
Sbjct: 178 LMSGGQSKLNLSDDLDNMDSHTRQPRTSNN-------PLCIIRATAAENKAHIERLQLIK 230

Query: 233 KNAIW 237
            N +W
Sbjct: 231 DN-LW 234


>gi|332528386|ref|ZP_08404380.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC
           19624]
 gi|332042149|gb|EGI78481.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC
           19624]
          Length = 252

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 113/242 (46%), Gaps = 11/242 (4%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL ++  DRIIE+G VELL+   +      +  P GR +  +AL++HGI
Sbjct: 1   MRQIVLDTETTGLSAEGGDRIIELGCVELLNRKLSGNNLHFYFNP-GRDSHEDALRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++EFL+DKP F+ +  E   +                      EL            I D
Sbjct: 60  SNEFLRDKPKFAEVAQEILAYLQGAELIIHNAAFDVGFLNKELELIGKPALHTFVGGITD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+  +P  RN L++LC R G+  S R+ HGALLD+ LL+DVYI M  G   +    
Sbjct: 120 TLAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINMTRGQDALLID- 178

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDRYI 241
                    E+         L R        +++EL  H   +  + K      +W + +
Sbjct: 179 ----AGDAVEQAGAGFERIDLSRFDLPVLHASEQELAAHGDVLAQIDKACGGKTVWLQRV 234

Query: 242 SS 243
            +
Sbjct: 235 DA 236


>gi|319787627|ref|YP_004147102.1| DNA polymerase III subunit epsilon [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466139|gb|ADV27871.1| DNA polymerase III, epsilon subunit [Pseudoxanthomonas suwonensis
           11-1]
          Length = 247

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 92/246 (37%), Positives = 137/246 (55%), Gaps = 14/246 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIG VELL+   + R F  +L P+       A ++ G+
Sbjct: 1   MRQIILDTETTGLEWKKGNRVVEIGCVELLERRPSGRNFHRYLKPDC-DFEAGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           T EFL DKP+F  I  EF ++ +      I HNA FD+GF++ EL R        +D   
Sbjct: 60  TLEFLADKPAFEEIVDEFLEYIDGAE--LIIHNAAFDLGFLDYELSRCGAHLGRIVDRCS 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLLLARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWDR 239
           FG      R       +   +S  +R +        EEL+ H + ++ L K    A+WD+
Sbjct: 178 FGDVEAASRGPVVTTVSFAPVS-GERPR---ISAQPEELEAHARRLERLRKKAGRALWDQ 233

Query: 240 YISSNQ 245
           Y    +
Sbjct: 234 YEPLPE 239


>gi|163801804|ref|ZP_02195701.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
 gi|159174312|gb|EDP59116.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
          Length = 238

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 94/239 (39%), Positives = 138/239 (57%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IV D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R+  PEA+ 
Sbjct: 11  RIIVLDTETTGMNLEGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPEAIG 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118
           +HGITDEFL DKP +S +  EF DF        +AHNA FD GF++ E + ++       
Sbjct: 70  VHGITDEFLVDKPDYSHVHQEFLDFIKGAE--LVAHNAPFDTGFMDYEFEMLDPAIGKTD 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M    
Sbjct: 128 DFCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTG-- 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            Q +  F  N+     E  + V       R      R T +E++ H K ++ +  ++IW
Sbjct: 186 GQTSLEFNANKKNGEPEGIRRVQG-----RKALKVLRATADEVEAHQKRLELVN-DSIW 238


>gi|52841614|ref|YP_095413.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628725|gb|AAU27466.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 251

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 81/230 (35%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTG+  +   R+IEIG +EL+D   T + F ++L P  R+    A ++HGI
Sbjct: 19  MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 77

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL+DKP F  I +EF  F                      +  + NK   D  RI+D
Sbjct: 78  STEFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILD 137

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR KHP  RN L++LCKRY I   +R  HGALLD+ +L+ VY+ M  G S      
Sbjct: 138 TLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSS----L 193

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            T  +    + K     I  L   KP+  +  +EEL +H   ++ + K +
Sbjct: 194 FTEVESSLSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKS 243


>gi|71281267|ref|YP_268980.1| DNA polymerase III, epsilon subunit [Colwellia psychrerythraea 34H]
 gi|71147007|gb|AAZ27480.1| DNA polymerase III, epsilon subunit [Colwellia psychrerythraea 34H]
          Length = 256

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 102/253 (40%), Gaps = 25/253 (9%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCP-----NGRKNSP 57
           +   R I+ D ETTG++  +  RI+EIG VE+++   T RT+  ++ P        +   
Sbjct: 11  EKDKRLIILDTETTGINPREGHRIVEIGCVEMINRQLTGRTYHAYIKPLDQRGQVFQMEQ 70

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV---------GFINA 108
           E + +HG+T+EFL DKP FS +  EF DF                              +
Sbjct: 71  EVINIHGLTNEFLADKPIFSQVVHEFIDFIRGAELVIHNSKFDVGFMDHEFSLFNSMGRS 130

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           + +    + +        +S      P + + L    +     +  R+ HGAL+D+ LL+
Sbjct: 131 QDKVPMTEDICTITDTLKVSKDELGSPKTLDYLARFYRV--DKLVDRTYHGALIDAQLLA 188

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
            VYI+M     Q +F   + +                  R+K      + +EL  H + +
Sbjct: 189 YVYIEMTR--KQSSFNLSSGDGTNADAN---AIRRVSSTRNKLKVIAASADELVAHTERV 243

Query: 229 QTLGKN---AIWD 238
             +GK     +W 
Sbjct: 244 AVIGKKGGDPLWK 256


>gi|307261758|ref|ZP_07543424.1| hypothetical protein appser12_13170 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868576|gb|EFN00387.1| hypothetical protein appser12_13170 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 248

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 84/241 (34%), Positives = 129/241 (53%), Gaps = 16/241 (6%)

Query: 11  VFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+   EA+K+HGI
Sbjct: 2   VLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVDEEAIKVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122
           T+EFL+DKP F+ +  EF +F        I HNA FDV F++ E   +   P        
Sbjct: 61  TNEFLQDKPVFAEVADEFIEFIKGAE--LIIHNAPFDVAFMDQEFSYLGNPPPKTAEMCS 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++ M  G   + 
Sbjct: 119 VTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLAL- 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
            G +             +  I+  +    +   +++EE   H++ ++ + K    N IW 
Sbjct: 178 LGEEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWM 237

Query: 239 R 239
           R
Sbjct: 238 R 238


>gi|21230449|ref|NP_636366.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769557|ref|YP_244319.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992765|ref|YP_001904775.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112012|gb|AAM40290.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574889|gb|AAY50299.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734525|emb|CAP52735.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           campestris]
          Length = 245

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 134/239 (56%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLRPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           T EFL DKP F+ +  EF  + +      I HNA FD+GF++ EL          +D + 
Sbjct: 60  TLEFLADKPVFAEVVEEFLAYIDGAE--LIIHNAAFDLGFLDNELSLLGDQFGRIIDRAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           FG           E     + SLL   +P    +T  EL  H+  ++ L K    A+WD
Sbjct: 178 FGAMDAGQHAEGGEGMIAFDPSLL-LPRPRVV-VTPSELQAHEARLERLRKKAGRALWD 234


>gi|90414055|ref|ZP_01222038.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
 gi|90324850|gb|EAS41378.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
          Length = 246

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 83/248 (33%), Positives = 133/248 (53%), Gaps = 16/248 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R IV D ETTG++      +   IIEIGAVE+++   T  +F V++ P+ R   
Sbjct: 5   MKATNQRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEIINRKLTGNSFHVYIKPD-RTIE 63

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            EA+ +HGITDEFL  KP +  +  EF +F        +AHNA FDVGF++ E +++N +
Sbjct: 64  VEAIGVHGITDEFLIGKPVYKEVHDEFLEFIKGAE--LVAHNAPFDVGFMDYEFRKLNPN 121

Query: 117 P---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 122 IGKTEDFCKVTDTLAMAKKIFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLL 181

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           M     Q +       +         +  I+   R        + +E++ H+  +  + K
Sbjct: 182 MTG--GQTSLALSAEREDRDAGTGSEIKRIAPG-RKLLKVLHASADEIEAHESRLDIISK 238

Query: 234 NA--IWDR 239
               +W +
Sbjct: 239 KGDVMWRQ 246


>gi|304395367|ref|ZP_07377250.1| DNA polymerase III, epsilon subunit [Pantoea sp. aB]
 gi|304356661|gb|EFM21025.1| DNA polymerase III, epsilon subunit [Pantoea sp. aB]
          Length = 243

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 85/249 (34%), Positives = 130/249 (52%), Gaps = 18/249 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F ++L P+ R  
Sbjct: 1   MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLV 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI DEFL DKP+FS I  EF D+        + HNA FD+GF++ E  ++N+
Sbjct: 59  DPEAFGVHGIADEFLADKPAFSDIADEFLDYIRGAE--LVIHNAPFDIGFMDYEFSKLNR 116

Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                    +I D+L++ARR  P  RN L++LC RY I  + R+ HGALLD+ +L++V++
Sbjct: 117 GIEKTETFCKITDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAEILAEVFL 176

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G          +E    +E +       +           ++EE+  H+  +  + 
Sbjct: 177 TMTGGQ---TSLSFLSESESAREAQGESIQRIVRPASALRVVTASEEEVVAHESRLDLVM 233

Query: 233 KN---AIWD 238
           K     +W 
Sbjct: 234 KKGGSCLWR 242


>gi|308185776|ref|YP_003929907.1| DNA polymerase III epsilon subunit [Pantoea vagans C9-1]
 gi|308056286|gb|ADO08458.1| DNA polymerase III epsilon subunit [Pantoea vagans C9-1]
          Length = 243

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 86/249 (34%), Positives = 134/249 (53%), Gaps = 18/249 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F ++L P+ R  
Sbjct: 1   MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLV 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI DEFL DKP+FS I  EF D+        + HNA FD+GF++ E  ++N+
Sbjct: 59  DPEAFGVHGIADEFLADKPAFSEIADEFLDYIRGAE--LVIHNAPFDIGFMDYEFSKLNR 116

Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                    +I D+L++ARR  P  RN L++LC RY I  + R+ HGALLD+ +L++V++
Sbjct: 117 GIEKTETFCKITDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAEILAEVFL 176

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G + ++F  ++   R  + E        +           ++EE+  H+  +  + 
Sbjct: 177 TMTGGQTSLSFLSESESARQAQGESIQRI---VRPASALRVVTASEEEVVAHESRLDLVM 233

Query: 233 KN---AIWD 238
           K     +W 
Sbjct: 234 KKGGSCLWR 242


>gi|332525346|ref|ZP_08401511.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
 gi|332108620|gb|EGJ09844.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
          Length = 234

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 114/238 (47%), Gaps = 12/238 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL +   DR++E+G +E+L+   + RT   +L P  R ++PEA+K+HG+
Sbjct: 1   MRQIFLDTETTGLSAVDGDRLVEVGCIEMLNRRLSGRTLHHYLNPE-RSSNPEAVKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDEFL DKP F+++  EF +F  +                         +       I D
Sbjct: 60  TDEFLADKPLFAAVADEFIEFVRDAELIIHNAAFDVGFLDAELTRLGKPRLVELGCTITD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L +AR+  P   N L++LCKR  +  S+R+ HGALLD+ LL++VYI+M  G   +    
Sbjct: 120 SLVMARQLFPGKANSLDALCKRLEVDNSNRALHGALLDAGLLAEVYIRMTRGQDSLVIDD 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDR 239
                   +     +   +            + EE   H+  +  L K +    IW +
Sbjct: 180 AQEGGTALEVAAIDLSQFT------LPVLVASDEEAAAHEAVLAELDKASNGRTIWRQ 231


>gi|91788057|ref|YP_549009.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666]
 gi|91697282|gb|ABE44111.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666]
          Length = 234

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 83/239 (34%), Positives = 124/239 (51%), Gaps = 16/239 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL ++  DRIIEIG VEL+    T      +L P  R +  +ALK+HGI
Sbjct: 1   MRQIVLDTETTGLSAENGDRIIEIGCVELVGRKLTGNNRHFYLNPE-RDSHEDALKVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           ++EFLKDKP F+++  E  ++          HNA FDV F+N EL+ I +DP+     ++
Sbjct: 60  SNEFLKDKPKFAAVADELLEYLQGAEII--IHNAPFDVSFLNKELELIGRDPIRHCVAKV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L +A+   P  RN L++LC R  +  S R+ HGALLD+ LL+DVYI +  G + +  
Sbjct: 118 TDSLMMAKELFPGKRNSLDALCDRLDVDNSGRTLHGALLDAELLADVYINLTRGQNSLMM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                       +    P +  L            +E+  H+  +  + K      +W 
Sbjct: 178 D------VGGPAQDGDTPPLIDLSAFALPLLLANDQEIAAHEVLLADIDKASKGKTVWR 230


>gi|319638369|ref|ZP_07993131.1| DNA polymerase subunit III [Neisseria mucosa C102]
 gi|317400118|gb|EFV80777.1| DNA polymerase subunit III [Neisseria mucosa C102]
          Length = 245

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 114/243 (46%), Gaps = 13/243 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           R+I+ D ETTGL  +  DR++E   +E+++   T+    +++ P  R    E   +    
Sbjct: 4   RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGLT 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
           I     K+ P F+ +  +  DF        I HNAKFDVGF+N E +R+    ++    +
Sbjct: 63  IEVLEAKNAPPFAQVGKQIADFIRGAE--LIIHNAKFDVGFLNMEFRRMGLPSIEELGCK 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M      + 
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQFDLM 180

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
            G    E              S     +    +   +EL  H+K +  LG+  +W +  +
Sbjct: 181 GGEAEEEGEVKPTIIAETKRTS-----QLKVIKADADELAAHEKYLDDLGEACVWRKAET 235

Query: 243 SNQ 245
            ++
Sbjct: 236 PDE 238


>gi|288956846|ref|YP_003447187.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
 gi|288909154|dbj|BAI70643.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
          Length = 227

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 82/232 (35%), Positives = 131/232 (56%), Gaps = 9/232 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG   +   R++EIG +EL+++  T   F V+L P  R   PEA  +HG+
Sbjct: 1   MREIVLDTETTGFKPEEGHRLVEIGCIELVNHLATGERFHVYLNPE-RDMPPEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++EFL DKP F+ + ++F  F  +  +  + HNA FD+ F+N EL+      +   R ID
Sbjct: 60  SEEFLADKPLFNDVAADFVAFIGD--SPLVIHNAAFDMHFLNWELKIAGYPVMPKDRAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR+K P S   L++LCKR+G+  S+R+ HGALLD+ LL++VY++++  G Q    F
Sbjct: 118 TLLMARQKFPGSPATLDALCKRFGVDNSNRTLHGALLDAQLLAEVYLELLG-GRQTGLSF 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                    +     P        +     +++EE   H + ++ + KN +W
Sbjct: 177 A---GGPVSKGGVAGPVRVDRPFREARVFAVSEEEAAAHAEMLKKI-KNPLW 224


>gi|261400727|ref|ZP_05986852.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC
           23970]
 gi|269209492|gb|EEZ75947.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC
           23970]
          Length = 244

 Score =  128 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 103/241 (42%), Gaps = 9/241 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    E   +    
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAAKVHGLT 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I     K+ P F+ +  +  DF                   +      +         + 
Sbjct: 63  IEVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M        F 
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQ----FD 178

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
               +++     +  V  + + +  K    +  + EL  H+K +  LG++ IW +    +
Sbjct: 179 LMGEDEKEEPAAQPAVS-VEMKRSAKLKVVKADETELAAHEKYLDGLGESCIWRKEAVPS 237

Query: 245 Q 245
           +
Sbjct: 238 E 238


>gi|307257347|ref|ZP_07539117.1| hypothetical protein appser10_13450 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864197|gb|EFM96110.1| hypothetical protein appser10_13450 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 248

 Score =  128 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 84/241 (34%), Positives = 129/241 (53%), Gaps = 16/241 (6%)

Query: 11  VFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+   EA+K+HGI
Sbjct: 2   VLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVDEEAIKVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122
           T+EFL+DKP F+ +  EF +F        I HNA FDV F++ E   +   P        
Sbjct: 61  TNEFLQDKPVFAEVADEFIEFIKGAE--LIIHNAPFDVAFMDQEFSYLENPPPKTAEMCS 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++ M  G   + 
Sbjct: 119 VTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLAL- 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
            G +             +  I+  +    +   +++EE   H++ ++ + K    N IW 
Sbjct: 178 LGEEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWM 237

Query: 239 R 239
           R
Sbjct: 238 R 238


>gi|254452968|ref|ZP_05066405.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           238]
 gi|198267374|gb|EDY91644.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           238]
          Length = 242

 Score =  128 bits (320), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 20/247 (8%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  + DRI+EIGA+EL ++  T RT+  ++ P  R     A  +HGI
Sbjct: 1   MREIVLDTETTGFEPSEGDRIVEIGAIELHNHMPTGRTYHQYINPK-RTMPAGAFGIHGI 59

Query: 66  TDEFLKDK-------------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L+               P F+ I   F DF  +  ++ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQTPTAGQVLLRDKPVFAEIAQAFVDFIGD--SKLVIHNAAFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +N+  L   + +DTL IAR+K P S   L++LC+R+GI  S+R+ HGALLDS +L++VY+
Sbjct: 118 VNRPLLPMGQSLDTLGIARKKFPGSPASLDALCRRFGIDNSNRTLHGALLDSEILAEVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++ G           +      +           R  PL  +I   E D H   I+ LG
Sbjct: 178 ELIGGRQP---DLVMGDQTGSNAKNGGGAEWRPQLRTTPLAPKIKAAEADAHAAFIKLLG 234

Query: 233 KNAIWDR 239
            NA+W++
Sbjct: 235 DNALWNK 241


>gi|114328806|ref|YP_745963.1| DNA polymerase III subunit epsilon [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316980|gb|ABI63040.1| DNA polymerase III, epsilon chain [Granulibacter bethesdensis
           CGDNIH1]
          Length = 225

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 87/232 (37%), Positives = 121/232 (52%), Gaps = 12/232 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++FD ETTG D    DRI+EI A+EL +   T  TF   + P  R    EA ++HG T
Sbjct: 3   RSVLFDTETTGFDPLTGDRILEIAALELFNDLPTGNTFHTLVDP-CRDVPEEATRVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E L+ KP F+ I  +   FF       IAHNA FD  F+NAE  R+ K  LDP+R+IDT
Sbjct: 62  AEMLRGKPLFADIVEDLLAFF--GRDPLIAHNAPFDFNFLNAEFARLGKPKLDPARMIDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +A+ + P   N L++LC+R+ I +S R+ H ALLD  LL++VYI++   G Q   G  
Sbjct: 120 LVMAKARFPGMPNSLDALCRRFSIDLSQRTTHNALLDCKLLAEVYIELTG-GRQRGLGLT 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
             E      E +   +        P      +  L  H+  I  L K+ +W 
Sbjct: 179 EAERAAAVAEYEHSAS------RVPRPIMPDEATLAAHEAFIDRL-KDPVWR 223


>gi|330994285|ref|ZP_08318213.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1]
 gi|329758752|gb|EGG75268.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1]
          Length = 226

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 85/234 (36%), Positives = 126/234 (53%), Gaps = 14/234 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I+FD ETTGLD  K DR+IEI A+EL+    T R F V + P  R    EA ++HG T
Sbjct: 3   RTILFDTETTGLDPLKGDRVIEIAALELVGDLPTGRNFHVLIDPE-RDVPEEASRVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+ KP F+ + S F +F  +     IAHNA+FD GF+NAEL R  +  LD  R++DT
Sbjct: 62  RADLEGKPKFAEVASGFLEFVGD--DPLIAHNARFDFGFLNAELARAGQPVLDMGRMVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +AR + P   N L++LC+R+ I +S R+ H ALLD  LL+ VY+++   G Q      
Sbjct: 120 LDMARERFPGMPNSLDALCRRFSIDLSERTTHNALLDCRLLAAVYLELTG-GRQRGLSLA 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE--ELDEHDKTIQTLGKNAIWD 238
             +          +     ++       R+T +  E+  H+  +  L  + +W+
Sbjct: 179 VEDGGG------GIATYDYVRPAGHAVVRVTPDAAEIAAHETFVARLS-SPLWN 225


>gi|152980051|ref|YP_001352902.1| DNA polymerase III epsilon subunit [Janthinobacterium sp.
           Marseille]
 gi|151280128|gb|ABR88538.1| DNA polymerase III epsilon subunit [Janthinobacterium sp.
           Marseille]
          Length = 235

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 116/241 (48%), Gaps = 12/241 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +  DRIIEIG VEL++   T   F  ++ P  R +   AL +HG+
Sbjct: 1   MRQIVLDTETTGLNPRSGDRIIEIGCVELVNRRLTGNNFHHYINPE-RDSEEGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F+ I +EF D+ +  +                 +             +ID
Sbjct: 60  TTEFLSDKPKFAEIAAEFRDYISGADVIIHNAPFDIGFLDAELKRVNTPSFKEHVGEVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  A+  HP  RN L++LC RYGI+ +HR+ HGALLD+ LL++VY+ M  G + ++   
Sbjct: 120 TLVQAKEMHPGKRNSLDALCDRYGISNAHRALHGALLDAELLAEVYLAMTRGQNSLSMDL 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRYI 241
             ++     +  + V    +                      +++L K     ++W +  
Sbjct: 180 GASDVGSDGQVLEVVAIAPVQLLAATAEELAAH------AAMVESLDKQVKGQSVWRKLE 233

Query: 242 S 242
           +
Sbjct: 234 T 234


>gi|326317571|ref|YP_004235243.1| DNA polymerase III subunit epsilon [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323374407|gb|ADX46676.1| DNA polymerase III, epsilon subunit [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 243

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 114/243 (46%), Gaps = 11/243 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++  DRIIE+G VELL+   T     ++  P  R +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSAEGGDRIIELGCVELLNRKLTGNNLHLYFNPE-RDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +EFLKDKP F+ +  E  ++                      EL            + DT
Sbjct: 62  NEFLKDKPKFAEVVDEILEYLQGAEIIIHNAAFDVGFLNKELELTGRPAFTSYVESVTDT 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +A+  +P  RN L++LC R G+  S R+ HGALLD+ LL+DVYI +  G   +     
Sbjct: 122 LVMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLIADD 181

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRYIS 242
             E          V     L          +++EL  HD+ +  + K      IW +  S
Sbjct: 182 AQEGDESAVRLAPVD----LSAFTLPVLLASEQELAAHDEVLAQIDKASGGKTIW-KISS 236

Query: 243 SNQ 245
            +Q
Sbjct: 237 DSQ 239


>gi|261856413|ref|YP_003263696.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus
           c2]
 gi|261836882|gb|ACX96649.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus
           c2]
          Length = 237

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 87/230 (37%), Positives = 125/230 (54%), Gaps = 9/230 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG+ +    R++EIGAVE+++   T +TF  +L P  R     A  +HG++
Sbjct: 4   RQIVLDTETTGMPAADGHRLVEIGAVEMIERRVTGKTFHCYLNPE-RLVDEGAFNVHGLS 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR---I 123
           D FL DKP F+ +  EF  F        I HNA+FDVGF++AEL R+            +
Sbjct: 63  DAFLADKPKFADVVDEFLAFIAGAE--LIIHNAEFDVGFLDAELARLANGGRLADVAGSV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L+IAR+KHP  RN L++LC+RY I  S R+ HGALLDS +L+DVY+ +  G   + F
Sbjct: 121 TDSLAIARKKHPGQRNSLDALCRRYSIDNSARTLHGALLDSEILADVYLALTGGQKTLGF 180

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
             +  +    K+    +       R         +EE   H   + TLGK
Sbjct: 181 DSEHGQGDEHKQAASIIR--LPADRPPLRVITANEEERAAHAAWLVTLGK 228


>gi|121605184|ref|YP_982513.1| DNA polymerase III subunit epsilon [Polaromonas naphthalenivorans
           CJ2]
 gi|120594153|gb|ABM37592.1| DNA polymerase III, epsilon subunit [Polaromonas naphthalenivorans
           CJ2]
          Length = 240

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 90/239 (37%), Positives = 130/239 (54%), Gaps = 16/239 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL ++  DRIIEIG VEL+    T      +L P GR +  +ALK+HGI
Sbjct: 1   MRQIVLDTETTGLSAENGDRIIEIGCVELVRRKLTGNNKHFYLNP-GRNSHEDALKVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           ++EFLKDKP FS++  E  D+          HNA FDV F+N EL+ I ++PL     ++
Sbjct: 60  SNEFLKDKPKFSAVVDELLDYLQGAEII--IHNAPFDVSFLNKELEIIGREPLMHCVAKV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L +A+   P  RN LN+LC R  +  S R+ HGALLD+ LL+DVYI +  G + +  
Sbjct: 118 TDSLMMAKEMFPGKRNSLNALCDRLEVDNSGRTLHGALLDAELLADVYINLTRGQNSLMM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
              +       E    +         +      +++E+D H+K + TL K      +W 
Sbjct: 178 DIGSPVQTGESEPLVDLRLF------ELPVLSASEQEMDAHEKVLLTLDKASRGKTVWR 230


>gi|302878569|ref|YP_003847133.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
 gi|302581358|gb|ADL55369.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
          Length = 233

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 86/242 (35%), Positives = 127/242 (52%), Gaps = 15/242 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MRKIV D ETTGLD K   RIIEI A+ L     + R F  +L P  R+   +A ++HG 
Sbjct: 1   MRKIVLDTETTGLDPKKGHRIIEIAAIALEGRKVSKRHFHHYLDPE-REVDEDAARVHGF 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + LK +  F+ I + F +F +      +AHNA FD+ FIN EL+ +   PL  + ++D
Sbjct: 60  TWDMLKGRAKFADIATSFLEFVDGAE--LMAHNAPFDMSFINNELRLLGLPPL-ENPVVD 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR  HP  +N L++LC RY I  +HR+ HGALLD+ LL++VY  M  G   +    
Sbjct: 117 TLKMAREMHPGKKNGLDALCSRYEIDNTHRTLHGALLDTELLAEVYFAMTRGQESL---L 173

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRYI 241
             +E    +E      + S   R        + +EL  H + +  + K      +W +  
Sbjct: 174 GEDEPPAAREIAVLSTDAS---RPTVRVLLPSPDELAVHAQQLLDIDKASKGACLWTKLE 230

Query: 242 SS 243
           S+
Sbjct: 231 SA 232


>gi|120611120|ref|YP_970798.1| DNA polymerase III subunit epsilon [Acidovorax citrulli AAC00-1]
 gi|120589584|gb|ABM33024.1| DNA polymerase III, epsilon subunit [Acidovorax citrulli AAC00-1]
          Length = 243

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/236 (32%), Positives = 110/236 (46%), Gaps = 10/236 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++  DRIIE+G VELL+   T     ++  P  R +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSAEGGDRIIELGCVELLNRKLTGNNLHLYFNPE-RDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +EFLKDKP F+ +  E  ++                      EL            + DT
Sbjct: 62  NEFLKDKPKFAEVVDEILEYLQGAEIIIHNAAFDVGFLNKELELTGRPAFTSYVESVTDT 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +A+  +P  RN L++LC R G+  S R+ HGALLD+ LL+DVYI +  G   +     
Sbjct: 122 LVMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLIADD 181

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
             E          V     L          +++EL  HD+ +  + K      IW 
Sbjct: 182 AQEGDETAVRLAPVD----LSAFTLPVLLASEQELAAHDEVLAQIDKASGGKTIWK 233


>gi|78046646|ref|YP_362821.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925275|ref|ZP_08186679.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118]
 gi|78035076|emb|CAJ22721.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325544321|gb|EGD15700.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118]
          Length = 244

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 88/239 (36%), Positives = 131/239 (54%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           T EFL DKP F  +  EF  + +      I HNA FD+GF++ EL          ++ + 
Sbjct: 60  TLEFLADKPLFGEVVDEFLAYIDGAE--LIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F       +          + +LL   +P    +T  EL  H+  +  L K    A+WD
Sbjct: 178 FASADAGQQTDAASGVIAFDPALL-LPRPR-IAVTASELQAHEARLAQLRKKAGRALWD 234


>gi|149912883|ref|ZP_01901417.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b]
 gi|149813289|gb|EDM73115.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b]
          Length = 244

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 92/247 (37%), Positives = 139/247 (56%), Gaps = 19/247 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGA+EL ++  T RTF  ++ P GR    EA ++HGI
Sbjct: 1   MREIVLDTETTGFDPEQGDRIVEIGALELYNHMPTGRTFHHYINP-GRGMPQEAFEVHGI 59

Query: 66  TDE-------------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             +              L+DKP F  + + F +F    NA+ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLDAPRPPRPGEITLRDKPPFDHVANAFIEFV--GNAKLVIHNAAFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    L   + IDTL+IAR+K P S   L++LC+R+ I  + R+ HGALLDS +L++VY+
Sbjct: 118 LKLPLLPWEQAIDTLAIARQKFPGSPASLDALCRRFAIDNTARTLHGALLDSEILAEVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++  G Q +F    +        +  +       R +PL  RIT+ E   H   I+T+G
Sbjct: 178 ELIG-GRQPDFALSAHPVAQSGSAETDIG-WRPKPRPQPLPPRITETEAAAHAAFIETMG 235

Query: 233 KNAIWDR 239
             ++W +
Sbjct: 236 DGSLWKK 242


>gi|28199104|ref|NP_779418.1| DNA polymerase III subunit epsilon [Xylella fastidiosa Temecula1]
 gi|71901532|ref|ZP_00683617.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|182681831|ref|YP_001829991.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M23]
 gi|28057202|gb|AAO29067.1| DNA polymerase III epsilon chain [Xylella fastidiosa Temecula1]
 gi|71728719|gb|EAO30865.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|182631941|gb|ACB92717.1| DNA polymerase III, epsilon subunit [Xylella fastidiosa M23]
 gi|307578082|gb|ADN62051.1| DNA polymerase III subunit epsilon [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 239

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 95/242 (39%), Positives = 133/242 (54%), Gaps = 13/242 (5%)

Query: 4   KNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +NK R+IV D ETTGL+ SK +RI+EIGAVELLD   +   F  +L P+    S  A ++
Sbjct: 2   RNKKRQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPDVSFES-GAQEV 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLD 119
            G+T EFL DKP FS I  +F  + N      I HNA FD+GF++ EL R         D
Sbjct: 61  TGLTMEFLADKPEFSMIADKFLAYINGAE--LIIHNAAFDLGFLDYELSRLGSQYGKITD 118

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            + ++DTL +AR ++P  RN L++LCKR G+  +HR  HGALLD+ +L+DVYI +  G  
Sbjct: 119 RASVLDTLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQE 178

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---I 236
           +I F    +                LL R        ++ EL+ H+  +  L K A   +
Sbjct: 179 EIGFALPESSRGGVDAASVAFMPDVLLTRPC---VVASQSELEAHEARLAKLRKIAGHVL 235

Query: 237 WD 238
           WD
Sbjct: 236 WD 237


>gi|307250533|ref|ZP_07532477.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857426|gb|EFM89538.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 248

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 84/241 (34%), Positives = 129/241 (53%), Gaps = 16/241 (6%)

Query: 11  VFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+   EA+K+HGI
Sbjct: 2   VLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVEEEAIKVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122
           T+EFL+DKP F+ +  EF +F        I HNA FDV F++ E   +   P        
Sbjct: 61  TNEFLQDKPVFAEVADEFIEFIKGAE--LIIHNAPFDVAFMDQEFSYLENPPPKTAEMCS 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++ M  G   + 
Sbjct: 119 VTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLAL- 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
            G +             +  I+  +    +   +++EE   H++ ++ + K    N IW 
Sbjct: 178 LGEEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWM 237

Query: 239 R 239
           R
Sbjct: 238 R 238


>gi|330813374|ref|YP_004357613.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486469|gb|AEA80874.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 225

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 129/223 (57%), Gaps = 8/223 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M +I+ D ETTGL    D+IIEI  +EL +   T   F VF+ PN    S  A + HGI+
Sbjct: 1   MLEIILDTETTGLSFNTDKIIEIACIELENQIPTKNKFHVFINPN-MDISDGAYQTHGIS 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +FL+DKP F  I  EF +F  +  ++ + HNA FD+ F+N ELQ ++ +PL   R++DT
Sbjct: 60  RDFLRDKPVFKDIAKEFLNFIKD--SKLVIHNADFDLAFLNKELQELDLEPLSKDRVVDT 117

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +AR+K P S+  L++LCKR+ I  S R KH AL+D +LL++VYI+++    +     +
Sbjct: 118 LFLARQKFPGSQASLDALCKRFKINTSEREKHSALVDCNLLTEVYIELLEK-KEPLLDLQ 176

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
            ++      +     N +  K    +   IT+EE + H K ++
Sbjct: 177 PSQADINDLDSSKTINTNRKK----IIVPITEEERNLHRKFLK 215


>gi|15838748|ref|NP_299436.1| DNA polymerase III subunit epsilon [Xylella fastidiosa 9a5c]
 gi|9107294|gb|AAF84956.1|AE004030_2 DNA polymerase III, epsilon chain [Xylella fastidiosa 9a5c]
          Length = 239

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 96/242 (39%), Positives = 134/242 (55%), Gaps = 13/242 (5%)

Query: 4   KNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +NK R+IV D ETTGL+ SK +RI+EIGAVELLD   +   F  +L P+    S  A ++
Sbjct: 2   RNKKRQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPDVSFES-GAQEV 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLD 119
            G+T EFL DKP FS I  EF  + N      I HNA FD+GF++ EL R         D
Sbjct: 61  TGLTMEFLADKPEFSMIADEFLAYINGAE--LIIHNAAFDLGFLDYELSRLGSQYGKITD 118

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            + ++DTL +AR ++P  RN L++LCKR G+  +HR  HGALLD+ +L+DVYI +  G  
Sbjct: 119 RASVLDTLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQE 178

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---I 236
           +I F    +                LL R   +    ++ EL+ H+  +  L K A   +
Sbjct: 179 EIGFALPESSRGGVDAASVAFMPDVLLTRPCVVV---SQSELEAHEARLAKLRKIAGHVL 235

Query: 237 WD 238
           WD
Sbjct: 236 WD 237


>gi|312115401|ref|YP_004012997.1| DNA polymerase III subunit epsilon [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220530|gb|ADP71898.1| DNA polymerase III, epsilon subunit [Rhodomicrobium vannielii ATCC
           17100]
          Length = 241

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 97/239 (40%), Positives = 130/239 (54%), Gaps = 10/239 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTGLD K   RIIE+  VEL +Y  T   +  +  P  R    EA  +HG+
Sbjct: 1   MRELVLDTETTGLDPKSGHRIIELACVELHNYIPTGVFWHWYFNPE-RSVPREATAIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRII 124
           TD FL DKP F +I  +              HNA FDVGF+N    +   + P+   R+ 
Sbjct: 60  TDGFLADKPLFGAIAPDIVKVLEGARLI--IHNASFDVGFLNFEFQKLGYQQPISMERVT 117

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++ARRKHP S N+L++LC+RYGI  S R+KHGALLDS LL+DVY++++    Q    
Sbjct: 118 DTLALARRKHPGSPNNLDALCRRYGIDNSTRTKHGALLDSELLADVYLRLIG-AEQAGLD 176

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
                       +     +    R KPL +R+T EE   H   + TLG  AIW RY  +
Sbjct: 177 LGARSAEVTVAGQAAAVQV----RLKPLPSRLTAEEAAAHAAFVATLGDKAIWKRYGDA 231


>gi|325914917|ref|ZP_08177249.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538810|gb|EGD10474.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 244

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 87/239 (36%), Positives = 130/239 (54%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           T EFL DKP F  +  EF  + +      I HNA FD+GF++ EL          +D + 
Sbjct: 60  TLEFLADKPLFGDVVEEFLAYIDGAE--LIIHNAAFDLGFLDNELSLLGDGYGRIIDRAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  +HR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F    +  +   E    +     L   +P    +T  E   H+  +  L K    A+WD
Sbjct: 178 FA-SADAGQNSNESSGMIAFDPALLLPRPRVV-VTASESQAHEARLAQLRKKAGRALWD 234


>gi|194098390|ref|YP_002001448.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998794|ref|ZP_04718718.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           35/02]
 gi|240112723|ref|ZP_04727213.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           MS11]
 gi|240115471|ref|ZP_04729533.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID18]
 gi|240123321|ref|ZP_04736277.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID332]
 gi|240128023|ref|ZP_04740684.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493581|ref|ZP_05106752.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291]
 gi|260440719|ref|ZP_05794535.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           DGI2]
 gi|268594640|ref|ZP_06128807.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268598788|ref|ZP_06132955.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11]
 gi|268601147|ref|ZP_06135314.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18]
 gi|268681945|ref|ZP_06148807.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332]
 gi|268686413|ref|ZP_06153275.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035]
 gi|291044028|ref|ZP_06569744.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2]
 gi|293399220|ref|ZP_06643385.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62]
 gi|193933680|gb|ACF29504.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512621|gb|EEH61966.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291]
 gi|268548029|gb|EEZ43447.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268582919|gb|EEZ47595.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11]
 gi|268585278|gb|EEZ49954.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18]
 gi|268622229|gb|EEZ54629.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332]
 gi|268626697|gb|EEZ59097.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035]
 gi|291012491|gb|EFE04480.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2]
 gi|291610634|gb|EFF39744.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62]
 gi|317164085|gb|ADV07626.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 244

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 9/241 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    E   +    
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I     K+ P F+ +  +  DF                   +      +         + 
Sbjct: 63  IQVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M        F 
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQ----FD 178

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
                +   +   K V +  +    K    +  + EL  H++ +  LG+  IW +    +
Sbjct: 179 LMGETEE-EEPTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIWRKEAVPS 237

Query: 245 Q 245
           +
Sbjct: 238 E 238


>gi|308049181|ref|YP_003912747.1| DNA polymerase III, epsilon subunit [Ferrimonas balearica DSM 9799]
 gi|307631371|gb|ADN75673.1| DNA polymerase III, epsilon subunit [Ferrimonas balearica DSM 9799]
          Length = 240

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 81/250 (32%), Positives = 121/250 (48%), Gaps = 20/250 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M +   +R+IVFD ETTG++          ++IEIG VEL++   T RT+ V++ P+ R 
Sbjct: 1   MTQAADLRQIVFDTETTGMNQGAGPHYLGHKLIEIGCVELINRKPTGRTYHVYIQPD-RP 59

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              EA+++HGITDEFL  KP F  I  EF++F           N          E+    
Sbjct: 60  VDEEAIQVHGITDEFLVGKPRFGEIAEEFFEFIRGAELIAHNANFDIGFIDYEFEMLGRF 119

Query: 115 KDPLDPSRIIDT----LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
               D   ++DT         R       +L++LC+ YGI  SHR+ HGALLD+ +L+DV
Sbjct: 120 GKLEDHCSLVDTLQLAREKKNRGEIQGNLNLDALCRFYGIDNSHRTLHGALLDAEILADV 179

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           ++ M  G  ++NFG          +            R +      T +ELD H K ++ 
Sbjct: 180 FLYMTGGQVKMNFG--------SGDGDAGGIIRLPEDRRRTKVVLATADELDNHTKRME- 230

Query: 231 LGKNAIWDRY 240
           L  +AIW R+
Sbjct: 231 LVSDAIWLRH 240


>gi|222110838|ref|YP_002553102.1| DNA polymerase iii subunit epsilon [Acidovorax ebreus TPSY]
 gi|221730282|gb|ACM33102.1| DNA polymerase III, epsilon subunit [Acidovorax ebreus TPSY]
          Length = 237

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 78/236 (33%), Positives = 115/236 (48%), Gaps = 11/236 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++  DRIIE+G VEL++   T     ++L P  R +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSAEGGDRIIELGCVELVNRKLTGNNLHLYLNPE-RDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +EFL+DKP F+    +   +           +          EL  +         +IDT
Sbjct: 62  NEFLRDKPKFAERVQDILQYLQGAELIIHNASFDVGFLDKELELVGLAPLSAHVGGVIDT 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+   P  RN L+SLC R G+  S R+ HGALLD+ LL+DVYI M  G   +     
Sbjct: 122 LAMAKEMFPGKRNSLDSLCDRLGVDNSSRTLHGALLDAELLADVYINMTRGQDALLIM-- 179

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWD 238
              D        T      L R        + +EL EH++ +  + K++    IW 
Sbjct: 180 ---DEATAGAGGTTVAAVDLSRIALTVLTASAQELAEHEEVLVQIDKSSGGKTIWR 232


>gi|121594487|ref|YP_986383.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42]
 gi|120606567|gb|ABM42307.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42]
          Length = 237

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 78/236 (33%), Positives = 115/236 (48%), Gaps = 11/236 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++  DRIIE+G VEL++   T     ++L P  R +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSAEGGDRIIELGCVELVNRKLTGNNLHLYLNPE-RDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +EFL+DKP F+    +   +           +          EL  +         +IDT
Sbjct: 62  NEFLRDKPKFAERVQDILQYLQGAELIIHNASFDVGFLDKELELVGLAPLSAHVGGVIDT 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+   P  RN L+SLC R G+  S R+ HGALLD+ LL+DVYI M  G   +     
Sbjct: 122 LAMAKEMFPGKRNSLDSLCDRLGVDNSSRTLHGALLDAELLADVYINMTRGQDALLIM-- 179

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWD 238
              D        T      L R        + +EL EH++ +  + K++    IW 
Sbjct: 180 ---DEATAGAGGTTVAAVDLSRIALTVLTASAQELAEHEEVLVQIDKSSSGKTIWR 232


>gi|59801359|ref|YP_208071.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA 1090]
 gi|240080918|ref|ZP_04725461.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA19]
 gi|268597034|ref|ZP_06131201.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
 gi|59718254|gb|AAW89659.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA 1090]
 gi|268550822|gb|EEZ45841.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
          Length = 244

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 9/241 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    E   +    
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I     K+ P F+ +  +  DF                   +      +         + 
Sbjct: 63  IQVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCTVT 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M        F 
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQ----FD 178

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
                +   +   K V +  +    K    +  + EL  H++ +  LG+  IW +    +
Sbjct: 179 LMGETEE-EEPTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIWRKEAVPS 237

Query: 245 Q 245
           +
Sbjct: 238 E 238


>gi|260221145|emb|CBA29417.1| DNA polymerase III subunit epsilon [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 236

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 110/240 (45%), Gaps = 15/240 (6%)

Query: 7   MRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           MR+IV D ETTG  + +    DR++EIG VEL++   T      +L P GR +   AL++
Sbjct: 1   MRQIVLDTETTGFYANHPDNPDRMVEIGCVELVNRKLTGNNLHFYLNP-GRDSDEGALRV 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+T +FL DKP F  I  +  D+                   +              + 
Sbjct: 60  HGLTTQFLSDKPRFEEIAQQLVDYVGGAEIIIHNAPFDLSFLDMELGRTGRKPFKTCVAG 119

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +A+   P  RN L++LC R  +  S R+ HGALLD+ LL+DVYI M  G   + 
Sbjct: 120 VLDTLVMAKEMFPGKRNSLDALCDRLEVDNSGRTLHGALLDAELLADVYINMTRGQDALI 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWD 238
                 ++     E+  + +I      +        +E+  H+  +  L K++    +W 
Sbjct: 180 MESSAPQEAGIVVEQLDLRSI------QLPVLEANAQEMAAHEDVLSQLDKSSGGKTVWK 233


>gi|71276291|ref|ZP_00652569.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Dixon]
 gi|71898480|ref|ZP_00680652.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|170730488|ref|YP_001775921.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M12]
 gi|71162899|gb|EAO12623.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Dixon]
 gi|71731793|gb|EAO33852.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|167965281|gb|ACA12291.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 239

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 96/242 (39%), Positives = 134/242 (55%), Gaps = 13/242 (5%)

Query: 4   KNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +NK R+IV D ETTGL+ SK +RI+EIGAVELLD   +   F  +L P+    S  A ++
Sbjct: 2   RNKKRQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPDVSFES-GAQEV 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLD 119
            G+T EFL DKP FS I  EF  + N      I HNA FD+GF++ EL R         D
Sbjct: 61  TGLTMEFLADKPEFSMIADEFLAYINGAE--LIIHNAAFDLGFLDYELSRLGSQYGKITD 118

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            + ++DTL +AR ++P  RN L++LCKR G+  +HR  HGALLD+ +L+DVYI +  G  
Sbjct: 119 RASVLDTLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTCGQE 178

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---I 236
           +I F    +                LL R   +    ++ EL+ H+  +  L K A   +
Sbjct: 179 EIGFALPESSCGGVDAASAAFMPDVLLTRPCVVV---SQSELEAHEARLAKLRKIAGHVL 235

Query: 237 WD 238
           WD
Sbjct: 236 WD 237


>gi|221066578|ref|ZP_03542683.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
 gi|220711601|gb|EED66969.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
          Length = 243

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 117/242 (48%), Gaps = 9/242 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL +   DR+IE+G VEL++   T     ++    GR + P+AL++HGIT
Sbjct: 3   RQIVLDTETTGLSAIDGDRLIELGCVELVNRKLTGNNLHLYFN-AGRDSHPDALRVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            EFLKDKP F     E W++                      +L +          +IDT
Sbjct: 62  TEFLKDKPRFEEKIDEIWEYLQGAELIIHNAPFDLGFLNNELKLAKRPPLKQCVGGVIDT 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +A+  +P  RN L+SLC R G+  S+R+ HGALLD+ LL+DVYI +  G   +    +
Sbjct: 122 LVMAKEMYPGKRNSLDSLCDRLGVDNSNRTLHGALLDAELLADVYINLTRGQDALLMSEE 181

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDRYIS 242
             +            ++S     +    R  ++E   HD  ++ + K++     W  + +
Sbjct: 182 PADAPAAGTMIVASVDLSSF---RLPVLRANEQEQAAHDDVLKQMDKSSGGKTAWRNFEN 238

Query: 243 SN 244
            +
Sbjct: 239 VS 240


>gi|319762901|ref|YP_004126838.1| DNA polymerase iii, epsilon subunit [Alicycliphilus denitrificans
           BC]
 gi|330824980|ref|YP_004388283.1| DNA polymerase III subunit epsilon [Alicycliphilus denitrificans
           K601]
 gi|317117462|gb|ADU99950.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans
           BC]
 gi|329310352|gb|AEB84767.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans
           K601]
          Length = 242

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 76/236 (32%), Positives = 115/236 (48%), Gaps = 11/236 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++  DRIIE+G VELL    T     ++L P  R +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSAENGDRIIELGCVELLSRKLTGNNLHLYLNPE-RDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +EFL+DKP F+ +  +  ++           +          EL  +         +IDT
Sbjct: 62  NEFLRDKPKFAEVVHDILEYLRGAELIIHNASFDVGFLDKELELAGLPPLAAHVDGVIDT 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+   P  RN L++LC R  +  S R+ HGALLD+ LL+DVYI M  G   +    +
Sbjct: 122 LAMAKEMFPGKRNSLDALCDRLEVDNSGRTLHGALLDAELLADVYINMTRGQDALLIMDE 181

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWD 238
           T       +          L R        + +EL EH+  +  + K++    IW 
Sbjct: 182 TANGEGGVKVAAVD-----LSRLVLPVLLASDQELAEHEDLLAQIDKSSAGKTIWR 232


>gi|289207686|ref|YP_003459752.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sp. K90mix]
 gi|288943317|gb|ADC71016.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. K90mix]
          Length = 238

 Score =  125 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 86/242 (35%), Positives = 126/242 (52%), Gaps = 18/242 (7%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+  +  R+IEIG +EL +   T R    +L P+ R+    A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPSEGHRVIEIGCLELDNRRPTGRKLHEYLQPD-REIDAGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDP 120
           T+EFL DKP F+ +  EF +F        I HNA FDVGFIN EL+         + ++ 
Sbjct: 60  TNEFLADKPRFADVVGEFIEFVRGAE--LIIHNAPFDVGFINHELRLLGEAAPVTELVEV 117

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             ++D+L +ARR HP +RN L++LCKRY I  S R+ HGALLD+ LL+DVY+ M  G   
Sbjct: 118 CTVLDSLVMARRMHPGTRNSLDALCKRYEIDASGRTLHGALLDAELLADVYLAMTGGQVA 177

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AI 236
           +      +         +   +                +E   H+  ++TL +       
Sbjct: 178 LGLDAGGDAGAEAGAPARAQRSGK-----PLPVIEPDADEQAAHEALLRTLDEAAGGVCR 232

Query: 237 WD 238
           W 
Sbjct: 233 WR 234


>gi|325134669|gb|EGC57309.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M13399]
          Length = 244

 Score =  125 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 102/248 (41%), Gaps = 13/248 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE- 58
           MI+    R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    E 
Sbjct: 1   MIQ----RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEA 55

Query: 59  -ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             +    I     K+ P F+ +  +  DF                   +      +    
Sbjct: 56  ARVHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVE 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M   
Sbjct: 116 ELGCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRR 175

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                F          K E K V +    +  K    R  + EL  H + +  LG+  IW
Sbjct: 176 Q----FDLMGAAAE-EKMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIW 230

Query: 238 DRYISSNQ 245
            +    ++
Sbjct: 231 RKEAVPSE 238


>gi|15677367|ref|NP_274522.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|7226758|gb|AAF41870.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|261392239|emb|CAX49759.1| DNA polymerase III epsilon subunit [Neisseria meningitidis 8013]
 gi|308389659|gb|ADO31979.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha710]
 gi|316986028|gb|EFV64965.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76]
 gi|325130586|gb|EGC53333.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           OX99.30304]
 gi|325136592|gb|EGC59193.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M0579]
 gi|325140658|gb|EGC63175.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis CU385]
 gi|325199883|gb|ADY95338.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76]
 gi|325201794|gb|ADY97248.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M01-240149]
 gi|325208453|gb|ADZ03905.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 244

 Score =  125 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 9/241 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    E   +    
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I     K+ P F+ +  +  DF                   +      +         + 
Sbjct: 63  IQVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M        F 
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQ----FD 178

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
                    K E K V +    +  K    R  + EL  H + +  LG+  IW +    +
Sbjct: 179 LMGAAAE-EKMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIWRKEAVPS 237

Query: 245 Q 245
           +
Sbjct: 238 E 238


>gi|254670687|emb|CBA06809.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha153]
          Length = 244

 Score =  125 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 100/241 (41%), Gaps = 9/241 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    E   +    
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I     K+ P F+ +  +  DF                   +      +         + 
Sbjct: 63  IEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M      +   
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL--- 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
               E    +   K V +  +    K    +  + EL  H+K +  LG+  IW +    +
Sbjct: 180 --MGEAEEEEPAAKPVASAEMKLGAKLKVIKADEAELAAHEKYLDGLGEACIWRKEAVPS 237

Query: 245 Q 245
           +
Sbjct: 238 E 238


>gi|240014290|ref|ZP_04721203.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           DGI18]
 gi|240117765|ref|ZP_04731827.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID1]
 gi|240121853|ref|ZP_04734815.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID24-1]
 gi|240125570|ref|ZP_04738456.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           SK-92-679]
 gi|268603465|ref|ZP_06137632.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1]
 gi|268684159|ref|ZP_06151021.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679]
 gi|268587596|gb|EEZ52272.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1]
 gi|268624443|gb|EEZ56843.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679]
          Length = 244

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 9/241 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    E   +    
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I     K+ P F+ +  +  DF                   +      +         + 
Sbjct: 63  IQVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCTVT 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M      +   
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL--- 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
               E    +   K V +  +    K    +  + EL  H++ +  LG+  IW +    +
Sbjct: 180 --MGETEEEETTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIWRKEAVPS 237

Query: 245 Q 245
           +
Sbjct: 238 E 238


>gi|325920993|ref|ZP_08182879.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325548527|gb|EGD19495.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC
           19865]
          Length = 244

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 86/239 (35%), Positives = 132/239 (55%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           T EFL DKP F+ +  EF  + +      I HNA FD+GF++ EL          ++ + 
Sbjct: 60  TLEFLADKPLFADVVEEFLAYIDGAE--LIIHNAAFDLGFLDNELSLLGDNYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F    +  +  ++    +     L   +P    +T  E   H+  +  L K    A+WD
Sbjct: 178 FA-SADAGQSTQDADGMISFDPALLLPRPRV-AVTASESQAHEARLAQLRKKAGRALWD 234


>gi|121635185|ref|YP_975430.1| DNA polymerase III, epsilon chain [Neisseria meningitidis FAM18]
 gi|120866891|emb|CAM10650.1| DNA polymerase III, epsilon chain [Neisseria meningitidis FAM18]
          Length = 253

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 11/248 (4%)

Query: 3   RKNKM--RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE- 58
           ++  M  R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    E 
Sbjct: 6   KEADMIQRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEA 64

Query: 59  -ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             +    I     K+ P F+ +  +  DF                   +      +    
Sbjct: 65  ARVHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVE 124

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M   
Sbjct: 125 ELGCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRR 184

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                F          K E K V +    +  K    R  + EL  H + +  LG+  IW
Sbjct: 185 Q----FDLMGAAAE-EKMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIW 239

Query: 238 DRYISSNQ 245
            +    ++
Sbjct: 240 RKEAVPSE 247


>gi|160872285|ref|ZP_02062417.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli]
 gi|159121084|gb|EDP46422.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli]
          Length = 235

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 92/241 (38%), Positives = 126/241 (52%), Gaps = 16/241 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTG D     RIIEIG +EL+D   T R F  +L P GR + P A  +HG+
Sbjct: 1   MRQIILDTETTGRDINNGHRIIEIGCLELIDRQLTKRQFHCYLNP-GRDSDPGAFAIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSR 122
           + EFL DKP F++I  E  +F  +     I HNA FD+ F+  E    ++  K   D  +
Sbjct: 60  STEFLMDKPVFTTIADELLNFIKDSQ--LIIHNAPFDLAFLEYELTLTKKKYKKMTDYCQ 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+D+L +AR+ HP  RN L++LCKRY I  S R KHGALLD+ LL+ VY+ M  G + + 
Sbjct: 118 ILDSLLLARQLHPGQRNSLDALCKRYNIDHSKRDKHGALLDAELLARVYLAMTGGQTHLF 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIWDR 239
              K    +    +KKT    +            T EEL  H   +    +L     W  
Sbjct: 178 NEPKPLTIQTHARQKKTTEATT------LPIIYATCEELTAHKNYLNHIYSLSGQCKWLH 231

Query: 240 Y 240
           Y
Sbjct: 232 Y 232


>gi|289664175|ref|ZP_06485756.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668767|ref|ZP_06489842.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 244

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 87/239 (36%), Positives = 130/239 (54%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           T EFL DKP F  +  EF  + +      I HNA FD+GF++ EL          ++ + 
Sbjct: 60  TLEFLADKPLFGEVVDEFLAYIDGAE--LIIHNAAFDLGFLDNELSLLGDNYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F       +          + +LL   +P    +T  E   H+  +  L K    A+WD
Sbjct: 178 FASADAGQQTNSASGMIAFDPALL-LPRPRV-AVTASESQAHEARLAQLRKKAGRALWD 234


>gi|294627921|ref|ZP_06706500.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666553|ref|ZP_06731794.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292597835|gb|EFF41993.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603697|gb|EFF47107.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 244

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 87/239 (36%), Positives = 130/239 (54%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           T EFL DKP F  +  EF  + +      I HNA FD+GF++ EL          ++ + 
Sbjct: 60  TLEFLADKPLFGEVVDEFLAYIDGAE--LIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F       +          + +LL   +P    +T  E   H+  +  L K    A+WD
Sbjct: 178 FASADAGQQTDAASGMIAFDPALL-LPRPRV-AVTASESQAHEARLAQLRKKAGRALWD 234


>gi|240016725|ref|ZP_04723265.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA6140]
          Length = 244

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 100/241 (41%), Gaps = 9/241 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    E   +    
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I     K+ P F+ +  +  DF                   +      +         + 
Sbjct: 63  IQVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCTVT 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL+IAR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M      +   
Sbjct: 123 DTLAIAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL--- 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
               E    +   K V +  +    K    +  + EL  H++ +  LG+  IW +    +
Sbjct: 180 --MGETEEEETTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIWRKEAVPS 237

Query: 245 Q 245
           +
Sbjct: 238 E 238


>gi|319760362|ref|YP_004124300.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039076|gb|ADV33626.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 251

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 78/250 (31%), Positives = 123/250 (49%), Gaps = 13/250 (5%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           +  N  R ++ D ETTG++      +  +IIEIGAVE+++ S T   F V+L PN R   
Sbjct: 1   MNINTTRYVILDTETTGMNKFGIHYEGHKIIEIGAVEIINRSLTKNKFHVYLNPN-RPVD 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINK 115
            EA K+HGI+D FLKDKP FS I ++F  F    N      +       F   E     K
Sbjct: 60  SEAFKIHGISDRFLKDKPVFSDISNKFLSFICGSNLVIHNASFDVGFLNFELRETNLKYK 119

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                  IID+L +AR   P  RN L++LC+RY I IS R+ H AL+D+ +L+ V++ M 
Sbjct: 120 TLETYCSIIDSLKLARNLFPGQRNSLDALCERYFIDISQRNLHNALIDAQILAYVFLAMT 179

Query: 176 VGGSQINFG---FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            G +++         +++     + +   N+   +         T EE   H++ ++ + 
Sbjct: 180 GGQTEMQLTNDIINLDKNTSVLSDMQRSYNVDTQEIKSLNIIYATVEEKTNHNRYLELIE 239

Query: 233 K---NAIWDR 239
           K     +W +
Sbjct: 240 KQSGKCLWKK 249


>gi|89900967|ref|YP_523438.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
 gi|89345704|gb|ABD69907.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
          Length = 233

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 106/238 (44%), Gaps = 12/238 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL +   DRIIEIG VEL     T      +L P GR++  +AL++HGI
Sbjct: 1   MRQIFLDTETTGLSADTGDRIIEIGCVELFKRKLTGNNKHFYLNP-GRESHEDALRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T  FLKDKP F ++  E   +  +                    L    +       + D
Sbjct: 60  TSAFLKDKPKFEAVADELLAYVKDAEIIIHNAPFDLGFLNKELALLGRPRFKEFVGSVTD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +A+   P  RN LN+LC R G+  S R+ HGALLD+ LL+DVYI +  G   +    
Sbjct: 120 TLVMAKEMFPGKRNSLNALCDRLGVDNSGRALHGALLDAELLADVYINLTRGQDALLMEA 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239
              E    +  +  + +I               +E   HD  +  + K      +W +
Sbjct: 180 GATESESLQVVQIDLGSIV------LPVLAANDQESAAHDDVLNQIDKASGNKTVWRK 231


>gi|304387081|ref|ZP_07369332.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           meningitidis ATCC 13091]
 gi|304338830|gb|EFM04933.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           meningitidis ATCC 13091]
 gi|325132669|gb|EGC55354.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M6190]
 gi|325138557|gb|EGC61120.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           ES14902]
 gi|325204491|gb|ADY99944.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M01-240355]
          Length = 244

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 9/241 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    E   +    
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I     K+ P F+ +  +  DF                   +      +         + 
Sbjct: 63  IQVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M        F 
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQ----FD 178

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
                    K E K V +    +  K    R  + EL EH + +  LG+  IW +    +
Sbjct: 179 LMGAAAE-EKMETKPVVHTETKRSGKLKVIRADENELAEHGQYLDGLGEACIWRKEAVPS 237

Query: 245 Q 245
           +
Sbjct: 238 E 238


>gi|264678862|ref|YP_003278769.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2]
 gi|299532427|ref|ZP_07045819.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
 gi|262209375|gb|ACY33473.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2]
 gi|298719665|gb|EFI60630.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
          Length = 243

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 117/242 (48%), Gaps = 9/242 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL +   DR+IE+G VEL++   T     ++    GR + P+AL++HGIT
Sbjct: 3   RQIVLDTETTGLSAIDGDRLIELGCVELVNRKLTGNNLHLYFN-AGRDSHPDALRVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            EFLKDKP F     E W++                      +L +          ++DT
Sbjct: 62  TEFLKDKPRFEEKIDEIWEYLQGAELIIHNAPFDLGFLNNELKLAKRPPLKQCVGGVLDT 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +A+  +P  RN L+SLC R G+  S+R+ HGALLD+ LL+DVYI +  G   +    +
Sbjct: 122 LVMAKEMYPGKRNSLDSLCDRLGVDNSNRTLHGALLDAELLADVYINLTRGQDALLMTEE 181

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDRYIS 242
             +            ++S  K       R  ++E   HD  ++ + K++     W  + +
Sbjct: 182 PADAPAAGAIVVPSVDLSSFKLP---VLRANEQEQQSHDDVLKQMDKSSGGKTAWRNFEN 238

Query: 243 SN 244
            +
Sbjct: 239 VS 240


>gi|325142705|gb|EGC65085.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           961-5945]
 gi|325198636|gb|ADY94092.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis G2136]
          Length = 244

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 101/241 (41%), Gaps = 9/241 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    E   +    
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I     K+ P F+ +  +  DF                   +      +         + 
Sbjct: 63  IEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M      +   
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL--- 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
               E    K E K V +    +  K    R  + EL EH + +  LG+  IW +    +
Sbjct: 180 --MGEAAEEKMETKPVVHTETKRSGKLKVIRADENELAEHGQYLDGLGEACIWRKEAVPS 237

Query: 245 Q 245
           +
Sbjct: 238 E 238


>gi|297250280|ref|ZP_06863987.2| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC
           43768]
 gi|296839296|gb|EFH23234.1| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC
           43768]
          Length = 253

 Score =  123 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 11/242 (4%)

Query: 3   RKNKM--RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE- 58
           ++  M  R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    E 
Sbjct: 6   KEADMIQRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEA 64

Query: 59  -ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             +    I     K+ P F+ +  +  DF                   +      +    
Sbjct: 65  ARVHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVE 124

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M   
Sbjct: 125 ELGCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR- 183

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
             Q +      E++    E K V +    +  K    R  + EL EH + +  LG++ IW
Sbjct: 184 -RQFDLMGAVAEEKM---ETKPVAHTETKRSGKLKVIRADENELAEHGQYLDGLGESCIW 239

Query: 238 DR 239
            +
Sbjct: 240 RK 241


>gi|33519691|ref|NP_878523.1| DNA polymerase III epsilon subunit [Candidatus Blochmannia
           floridanus]
 gi|33517354|emb|CAD83739.1| DNA polymerase III epsilon subunit [Candidatus Blochmannia
           floridanus]
          Length = 258

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 75/257 (29%), Positives = 116/257 (45%), Gaps = 20/257 (7%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           +  N  R +V D ETTG++      +  RIIEIGAVE+++   TN  F V+L PN R   
Sbjct: 1   MNINSNRYVVLDTETTGMNKFGVHYEGHRIIEIGAVEIINRRLTNNQFHVYLNPN-RSVD 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINK 115
            EA  +HGI+D+FL D+P F  I ++F  F           +       F    +   ++
Sbjct: 60  SEAFAIHGISDQFLVDQPCFLDIANDFLQFIRGSTLVIHNASFDLGFLNFELHNIYLNSR 119

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                  +ID+L +AR+  P  RN L++LC+RY I  S R  H AL+D+ LL+ V++ M 
Sbjct: 120 TVESYCTVIDSLKLARKIFPGQRNSLDALCERYCIKNSKRILHNALIDAQLLAYVFLVMT 179

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTV---------PNISLLKRDKPLFTRITKEELDEHDK 226
            G ++I F    +                      N    ++        T  E  EH+K
Sbjct: 180 GGQTRIQFMDMLDNSDTNILNNTITHDNKFELCLNNSVCTEKKSLKILYATSIEKLEHEK 239

Query: 227 TIQTLGK----NAIWDR 239
            +  + K      +W +
Sbjct: 240 YLDFVMKASNNQCLWRK 256


>gi|261253702|ref|ZP_05946275.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
 gi|260937093|gb|EEX93082.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
          Length = 223

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 85/226 (37%), Positives = 128/226 (56%), Gaps = 13/226 (5%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
           G   +  RIIEIGAVE+++   T R F V++ P+ R    EA+++HGITDEFL DKP + 
Sbjct: 6   GPHYQGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RDIQSEAVEVHGITDEFLVDKPEYQ 64

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSRIIDTLSIARRKH 134
            + +EF DF        +AHNA FD GF++ E   ++       D  ++ DTL++A++  
Sbjct: 65  DVHAEFLDFIKGAE--LVAHNAPFDTGFMDYEFGMLDPTIGKTDDYCKVTDTLAMAKKIF 122

Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFK 194
           P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G + + F   ++ D   +
Sbjct: 123 PGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLQFNAGSSNDDGGE 182

Query: 195 EEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWD 238
             K+         R      R T +E+D H+K +  + KN   +W 
Sbjct: 183 AIKRAASG-----RKALKVLRATADEIDAHNKRLDIVEKNGSCLWR 223


>gi|241763763|ref|ZP_04761810.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN]
 gi|241366982|gb|EER61378.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN]
          Length = 237

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 111/236 (47%), Gaps = 11/236 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++  DRIIEIG VEL+    T      +L P  R +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSAEGGDRIIEIGCVELVSRKLTGNNKHFYLNPE-RDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +EFL+DKP F+++  E  ++                      EL            + DT
Sbjct: 62  NEFLRDKPKFAAVADELLEYLQGAEVIIHNAAFDVGFLNKELELLGRPALHTFVDSVTDT 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+  +P  RN L++LC R G+  S R+ HGALLD+ LL+DVYI +  G   +     
Sbjct: 122 LAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLIIDD 181

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
             +        +       L+          ++E+  H++ +  + K      IW 
Sbjct: 182 AQDSAGGGHFVQID-----LRSFTLPVLPANEQEIAAHEEVLVQIDKASGGKTIWR 232


>gi|118594819|ref|ZP_01552166.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Methylophilales bacterium HTCC2181]
 gi|118440597|gb|EAV47224.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Methylophilales bacterium HTCC2181]
          Length = 222

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 11/227 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGLD  +  R+IEI A+E  +   T+  F  ++ P  R+    A ++HGI
Sbjct: 1   MRQIFLDTETTGLDPNQGHRVIEIAAIEFNNRQATSNRFHFYVNPQ-REIDAAAQEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T +FL DKP F  I ++F  F N                 +      + K       I+D
Sbjct: 60  TLDFLNDKPLFVDIAADFIAFINGSELVIHNAPFDVGFLNMELGKIGMEKLESYCDGIMD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L  A+   P  RN L++LC+ + +  S RS HGALLD+ LL +VYI+M  G       F
Sbjct: 120 SLKFAKEIRPGQRNSLDALCRAFDVDNSTRSLHGALLDAQLLGEVYIQMTRGQEAFTINF 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           + +  +   +                + T+   +E++ H+  ++++ 
Sbjct: 180 EEDSSKAALQSVDHGD---------LIVTQPALDEVEAHNSYLRSIN 217


>gi|319944001|ref|ZP_08018281.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia
           mirabilis ATCC 51599]
 gi|319742762|gb|EFV95169.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia
           mirabilis ATCC 51599]
          Length = 238

 Score =  122 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 106/228 (46%), Gaps = 5/228 (2%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++V D ETTGL++ K  RIIEIG VE+++   T     +++ P  R+    A  +HG+T
Sbjct: 6   RQVVLDTETTGLEASKGHRIIEIGCVEMVNRRITRNNLHLYINPE-REVDEGAAAVHGMT 64

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + L+DKP+F+ I  +F DF           +                      + + D+
Sbjct: 65  WDDLRDKPTFAQIVDQFLDFCRGAEIIIHNASFDTGFLDAELARLGRGTFASHVACVTDS 124

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++AR ++P  RN+L++LC+R  +   HR+ HGALLDS LL++VY+ M  G    + G  
Sbjct: 125 LAMARERYPGKRNNLDALCERLMVPNKHRTLHGALLDSELLAEVYLGMTRGQGSFDIGSS 184

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
             +D                          T  E   H++ +  L K 
Sbjct: 185 AEDDEGGAVADAGGGRWPPT---GLRVRLATDAERQLHEQGLVALEKQ 229


>gi|239815139|ref|YP_002944049.1| DNA polymerase III, subunit epsilon [Variovorax paradoxus S110]
 gi|239801716|gb|ACS18783.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus S110]
          Length = 235

 Score =  122 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 7/229 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++  DRIIE+G VEL     T     ++  P  R++  +ALK+HG+T
Sbjct: 3   RQIVLDTETTGLSAENGDRIIELGCVELFARKLTGNDLHIYFNPE-RESHEDALKVHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +FL+DKP F+++ ++  ++                      EL  +         + DT
Sbjct: 62  TDFLRDKPKFATLANDIVEYLRGAELIIHNAAFDVGFLNKELELAGLPPLRSFVGEVTDT 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A++ +P  RN L++LC R+G+  S+R+ HGA LD+ LL+DVYI +  G   +     
Sbjct: 122 LAMAKQVYPGKRNSLDALCDRFGVDRSNRTFHGAKLDAQLLADVYINLTRGQDALLIDVA 181

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           +NE      +  TV  I L + D P      ++EL  H+  +  L K++
Sbjct: 182 SNE----PAQGTTVVAIDLSQFDLP-VIMAAEQELAAHEAVLSQLDKSS 225


>gi|113460748|ref|YP_718815.1| DNA polymerase III subunit epsilon [Haemophilus somnus 129PT]
 gi|170719139|ref|YP_001784286.1| DNA polymerase III subunit epsilon [Haemophilus somnus 2336]
 gi|112822791|gb|ABI24880.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT]
 gi|168827268|gb|ACA32639.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 2336]
          Length = 252

 Score =  122 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 78/246 (31%), Positives = 116/246 (47%), Gaps = 14/246 (5%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+I+ D ETTG++      +   IIEIGAVE+++   T R   +++ P+ R   PEA+K+
Sbjct: 9   RQIILDTETTGMNEFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPD-RLVDPEAIKV 67

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGITDE L DKP FS+I  EF DF                      +    N +  D   
Sbjct: 68  HGITDEMLADKPDFSAIAQEFIDFIKGAELIIHNAPFDIGFMDYEFKKHNFNINTADICL 127

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I DTL +AR+ +P  RN L++LC R  I  S R+ HGALLD+ +L DVY+ M  G +   
Sbjct: 128 ITDTLQMARQMYPGKRNSLDALCDRLNIDNSKRTLHGALLDAEILGDVYLAMTGGQTS-- 185

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
                +E+       +   +              T+EE   H   ++ L     +N +W 
Sbjct: 186 --LFGDEEHTPIITLEENIHQHTTNTHNFKLLLPTEEEKLAHQDYLKLLNQKSKENCLWF 243

Query: 239 RYISSN 244
           +  +  
Sbjct: 244 KRNTKE 249


>gi|123441273|ref|YP_001005260.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088234|emb|CAL11023.1| DNA polymerase III, epsilon chain [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 238

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 77/234 (32%), Positives = 126/234 (53%), Gaps = 12/234 (5%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
           G+  +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +HGI+DEFL DKP+F+
Sbjct: 5   GVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGVHGISDEFLADKPTFA 63

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRIIDTLSIARRKH 134
            I  EF +F        I HNA FD+GF++ E + + +D         I D+L +ARR  
Sbjct: 64  DITPEFLEFIRGAE--LIIHNAAFDIGFMDYEFRMLQQDIPKTETFCTITDSLLLARRLF 121

Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFK 194
           P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G + ++F  + ++ +   
Sbjct: 122 PGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLSFSMEGDQTQNES 181

Query: 195 EEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWDRYISSNQ 245
            E                    T++E+  H+  +  + K     +W   + ++ 
Sbjct: 182 SEDIQRITRPAS---GLKIIYATEDEIAAHESRLDLVMKKGGSCLWRMPLETDD 232


>gi|296115251|ref|ZP_06833892.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295978352|gb|EFG85089.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 226

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 83/232 (35%), Positives = 122/232 (52%), Gaps = 10/232 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I+FD ETTGLD    DR+IEI A+EL+    + R+F+V + P  R    EA ++HG T
Sbjct: 3   RSILFDTETTGLDPLNGDRVIEIAALELIGDLPSGRSFRVLIDPE-RDVPEEASRVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+ +P F+ I  EF  F  +     IAHNA FD GF+NAE +R     L  +R++DT
Sbjct: 62  RADLEGQPKFAQIADEFLAFIGDDE--LIAHNAAFDFGFLNAEFRRAGLPELAMTRMVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L IAR + P   N L++LC+R+ I +S R+ H ALLD  LL++VYI+ + GG Q   G  
Sbjct: 120 LQIARARFPGMPNSLDALCRRFSIDLSARTTHNALLDCKLLAEVYIE-LSGGRQRGLGLS 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
             E            + +       +       E+  H + +  +  + +W 
Sbjct: 179 VEEGGTPSA----AYDYTRPAGHAVVRVVPDAAEIAAHARFVDEIS-DPLWR 225


>gi|21241847|ref|NP_641429.1| DNA polymerase III subunit epsilon [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107228|gb|AAM35965.1| DNA polymerase III epsilon chain [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 244

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 87/239 (36%), Positives = 130/239 (54%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           T EFL DKP F  +  EF  + +      I HNA FD+GF++ EL          ++ + 
Sbjct: 60  TLEFLADKPLFGEVVDEFLAYIDGAE--LIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F       +          + +LL   +P    +T  E   H+  +  L K    A+WD
Sbjct: 178 FASADAGQQADAASGMIAFDPALL-LPRPRV-AVTASESQAHEARLAQLRKKAGRALWD 234


>gi|188578361|ref|YP_001915290.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188522813|gb|ACD60758.1| DNA polymerase III, epsilon subunit [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 244

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 87/239 (36%), Positives = 130/239 (54%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           T EFL DKP F  +  EF  + +      I HNA FD+GF++ EL          ++ + 
Sbjct: 60  TLEFLADKPLFGDVVEEFLAYIDGAE--LIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F       +          + +LL   +P    +T  E   H+  +  L K    A+WD
Sbjct: 178 FASADAGQQTDAASGMIAFDPALL-LPRPRV-AVTASESQAHEARLVQLRKKAGRALWD 234


>gi|58580665|ref|YP_199681.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84622598|ref|YP_449970.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|166710938|ref|ZP_02242145.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|58425259|gb|AAW74296.1| DNA polymerase III epsilon chain [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366538|dbj|BAE67696.1| DNA polymerase III epsilon chai [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 244

 Score =  121 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 87/239 (36%), Positives = 130/239 (54%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122
           T EFL DKP F  +  EF  + +      I HNA FD+GF++ EL          ++ + 
Sbjct: 60  TLEFLADKPLFGEVVEEFLAYIDGAE--LIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F       +          + +LL   +P    +T  E   H+  +  L K    A+WD
Sbjct: 178 FASADAGQQTDAASGMIAFDPALL-LPRPRV-AVTASESQAHEARLVQLRKKAGRALWD 234


>gi|254456100|ref|ZP_05069529.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083102|gb|EDZ60528.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 220

 Score =  121 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 125/230 (54%), Gaps = 14/230 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+++V D ETTG+  K   RI+EIG +EL +   T   F  +L P  RK S +AL++HG 
Sbjct: 1   MKEVVLDTETTGISVKEGHRIVEIGCIELDNLIPTKNRFHCYLNPE-RKVSEKALEVHGY 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDEFL ++  FS I  +F  F  ++    I HNA+FD+G +N EL    K  +  + I+D
Sbjct: 60  TDEFLSEQKKFSDIGEQFLAFIKDKR--LIIHNAEFDLGHLNNELSIFGKKKI-NNEIVD 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR K P S   L++LCKRY I  S R++H AL+D  LLS VYI  ++   +    F
Sbjct: 117 TLILARDKFPGSPVSLDALCKRYRIDNSIRTQHTALIDCDLLSKVYIN-LIDQKEPTLNF 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-LGKN 234
           +  +          V              + +++E+ +H++ ++  L KN
Sbjct: 176 QNLDTETDNSNSSKVSYFK-------KVVKPSEDEIFKHNEYLKNHLKKN 218


>gi|254673235|emb|CBA08224.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha275]
 gi|325144796|gb|EGC67087.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M01-240013]
          Length = 244

 Score =  121 bits (303), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 98/235 (41%), Gaps = 9/235 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    E   +    
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I     K+ P F+ +  +  DF                   +      +         + 
Sbjct: 63  IEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M        F 
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQ----FD 178

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                    K E K V +    +  K    R  + EL EH + +  LG+  IW +
Sbjct: 179 LMGAAAE-EKMETKPVAHTETKRSGKLKVIRADENELAEHGRYLDGLGEACIWRK 232


>gi|167949084|ref|ZP_02536158.1| DNA polymerase III, epsilon subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 203

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 81/204 (39%), Positives = 118/204 (57%), Gaps = 7/204 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +   RIIEIG VE++D   +   F  +L P+ R+    A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPQQGHRIIEIGCVEMIDRRLSGNNFHQYLQPD-REIDAGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SR 122
           T+EFL DKP F+ + ++F D+        I HNA FDVGF+N ELQ +  D         
Sbjct: 60  TNEFLADKPRFADLAADFLDYIRGAE--LIIHNAPFDVGFLNHELQLMGADSPPIGELCA 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDTL +A++ HP  RN L++LCKRY +  + R  HGALLD+ +L+DVY+ M  G + ++
Sbjct: 118 VIDTLVMAKKMHPGQRNSLDALCKRYDVDNTQRELHGALLDAEILADVYLAMTGGQATLS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLL 206
                 E     +    +  I   
Sbjct: 178 LEMTRAEGESTADVDGGIRRIRYT 201


>gi|218768496|ref|YP_002343008.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491]
 gi|254805280|ref|YP_003083501.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           alpha14]
 gi|121052504|emb|CAM08843.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491]
 gi|254668822|emb|CBA06831.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           alpha14]
 gi|319410744|emb|CBY91127.1| DNA polymerase III epsilon subunit [Neisseria meningitidis WUE
           2594]
 gi|325127153|gb|EGC50103.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis N1568]
          Length = 244

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 99/241 (41%), Gaps = 9/241 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    E   +    
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I     K+ P F+ +  +  DF                   +      +         + 
Sbjct: 63  IEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M      +   
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL--- 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
               E    +   K V +  +    K    +  + EL  H + +  LG+  IW +    +
Sbjct: 180 --MGEAEEEEPAAKPVASAEMKLGAKLKVIKADEAELAAHGQYLDGLGEACIWRKEAVPS 237

Query: 245 Q 245
           +
Sbjct: 238 E 238


>gi|325205739|gb|ADZ01192.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M04-240196]
          Length = 244

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 99/241 (41%), Gaps = 9/241 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    E   +    
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I     K+ P F+ +  +  DF                   +      +         + 
Sbjct: 63  IEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M      +   
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL--- 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
               E    +   K V +  +    K    +  + EL  H + +  LG+  IW +    +
Sbjct: 180 --MGEAEEEEPAAKPVASAEMKLGAKLKVIKADEAELAAHGQYLDGLGEACIWRKEAVPS 237

Query: 245 Q 245
           +
Sbjct: 238 E 238


>gi|34496712|ref|NP_900927.1| DNA-directed DNA polymerase subunit epsilon [Chromobacterium
           violaceum ATCC 12472]
 gi|34102567|gb|AAQ58932.1| DNA-directed DNA polymerase, epsilon chain [Chromobacterium
           violaceum ATCC 12472]
          Length = 239

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 107/244 (43%), Gaps = 13/244 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGLD +   RIIE   +E++    T +   +++ P  R+  PEA ++HGI
Sbjct: 1   MRQIILDTETTGLDPQQGHRIIEFAGLEMVGRKLTGKHLHLYIHPE-REIDPEAQRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL  KP F+ +  E  DF  +                       I       + +ID
Sbjct: 60  SLEFLAGKPVFAKVAHEIADFLRDAELIIHNAPFDVGFLNAEFAKAGIEPVGKLCASVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+ AR   P  RN L++LC R+ I  S+R+ HGAL+D  LLS+VY+ M  G   +    
Sbjct: 120 TLAEARDMFPGKRNSLDALCDRFEIDRSNRTLHGALVDCELLSEVYLWMTRGQESLAMDI 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYI 241
           +           +        +R        ++ E  EH   +  L K      +W    
Sbjct: 180 EVELPGGDAGAIQ-------FERKPLKVLAASEAEEAEHQAYLDVLDKAVKGICVWRGLA 232

Query: 242 SSNQ 245
           S  Q
Sbjct: 233 SPAQ 236


>gi|117923346|ref|YP_863963.1| DNA polymerase III subunit epsilon [Magnetococcus sp. MC-1]
 gi|117607102|gb|ABK42557.1| DNA polymerase III, epsilon subunit [Magnetococcus sp. MC-1]
          Length = 237

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 86/239 (35%), Positives = 134/239 (56%), Gaps = 12/239 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG D K   RIIEIG VEL++  K     Q ++ P  R+   +A K+HGIT
Sbjct: 3   RLIVLDTETTGFDPKEGHRIIEIGCVELVNMRK-GDERQWYVNPE-REIPADATKVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIID 125
           D  + + P F  I+ EF  F  E +   + HNA+FD+ F+NAE  +   +  +   R ID
Sbjct: 61  DADVANSPKFKEIYHEFLAFIGEDS--LVIHNAEFDMRFLNAELTRLNKRLVMPMERAID 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +ARRK P S  +L++LCKR G+  S R+ HGALLD+HLL++VY+++M  G+Q +   
Sbjct: 119 TIPLARRKFPGSTVNLDALCKRLGVDNSGRTFHGALLDAHLLAEVYVELMG-GNQFSLEM 177

Query: 186 KTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTLGKN---AIWDR 239
             +E     +   +  + +        P   ++++E    H+  +Q L +    A+W++
Sbjct: 178 AADESGRIAQPSDSPKDGAPGPGLMMAPRDWQVSEESTQAHEAFLQLLDRESGGAVWNK 236


>gi|311085987|gb|ADP66069.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 237

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 80/241 (33%), Positives = 116/241 (48%), Gaps = 12/241 (4%)

Query: 5   NKMRKIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N+ R I+ D ETTG     L   N RIIEIGAVE++D   T   F V++ P GR     A
Sbjct: 2   NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           LK+HGIT++FL DKP F  I   F ++           +          E+         
Sbjct: 61  LKVHGITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINT 120

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I+DTL +AR+  P  +N L++LC RY I  SHR+ H A++DS+LL  +Y+ M  G  
Sbjct: 121 FCSIVDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTGGQD 180

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIW 237
                  ++    +KE  K +     LK +       T +E D H+K +Q +      +W
Sbjct: 181 S----LFSDNTINYKENFKKLKKNIQLKNNTLRILHPTLKENDLHEKYLQYMKDKSTCLW 236

Query: 238 D 238
           +
Sbjct: 237 N 237


>gi|160899427|ref|YP_001565009.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1]
 gi|160365011|gb|ABX36624.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1]
          Length = 238

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 77/242 (31%), Positives = 113/242 (46%), Gaps = 11/242 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR+IE+G VE+++   T     ++    GR + P+AL++HGIT
Sbjct: 3   RQIILDTETTGLSADNGDRLIELGCVEMVNRKLTGNNLHLYFN-AGRDSHPDALRVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            EFLKDKP F     E W++                      EL          S +IDT
Sbjct: 62  TEFLKDKPRFEHKVDEIWEYLQGAELIIHNAPFDLGFLNKELELANRPPIRQCVSGVIDT 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +A+   P  RN L+SLC R  +  S R+ HGALLD+ LL+DVYI +  G         
Sbjct: 122 LVMAKEMFPGKRNSLDSLCDRLEVDNSGRTLHGALLDAELLADVYINLTRGQE----ALL 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDRYIS 242
             E+    E    V  + L    K        +EL  H+  +  + K++    IW  + +
Sbjct: 178 MAEEPVQSEGGLVVAQVDLASF-KLRVVHANDQELAAHEDVMVQMDKSSGGKTIWRGFEN 236

Query: 243 SN 244
            +
Sbjct: 237 RS 238


>gi|319794398|ref|YP_004156038.1| DNA polymerase iii, epsilon subunit [Variovorax paradoxus EPS]
 gi|315596861|gb|ADU37927.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus EPS]
          Length = 240

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 7/229 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++  DR+IE+G VEL     T     ++  P  R++  +ALK+HG+T
Sbjct: 3   RQIVLDTETTGLSAENGDRVIELGCVELFARKLTGNDLHIYFNPE-RESHEDALKVHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +FL+DKP F+++ ++  ++                      E   +       + + DT
Sbjct: 62  TDFLRDKPKFATLANDIIEYLRGAELIIHNAAFDVGFLNKEFERAGLPPLRTFVAEVTDT 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+  +P  RN L++LC R+G+  S+R+ HGA LD+ LL+DVYI +  G   +     
Sbjct: 122 LAMAKLVYPGKRNSLDALCDRFGVDRSNRTFHGAKLDAQLLADVYINLTRGQDALLIDVA 181

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           +NE      +  TV  I L + + P      ++EL  H+  +  L K++
Sbjct: 182 SNE----PAQGTTVVAIDLSQFELP-VIAAGEQELAAHEAVLSQLDKSS 225


>gi|114777499|ref|ZP_01452496.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114552281|gb|EAU54783.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 300

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 86/245 (35%), Positives = 123/245 (50%), Gaps = 18/245 (7%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK---TNRTFQVFLCPNGRKNSPEALKL 62
           MR I+ D ETTGL     DR++EIGA+E+L+          F  ++ P  R    E +++
Sbjct: 53  MRLIMLDTETTGLSPLNGDRMVEIGAIEVLNRKVLSGDKHVFHRYINPE-RNIPDEVVRI 111

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI +  +KD+P+F  I  EF DF     A  + HNA FD+GFI  EL+  N   +   +
Sbjct: 112 HGIDNAKVKDQPTFREIAQEFLDFIEG--ATLVIHNAPFDLGFIMNELRINNFPEIGHMQ 169

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDTL  AR KHP  RN+L++LC RY I   HR  HGALLDS LL++VY+ M   G Q +
Sbjct: 170 VIDTLVFAREKHPHQRNNLDALCDRYNIERGHRELHGALLDSELLAEVYLGMTG-GRQFS 228

Query: 183 FGFKTNEDRFF------KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--- 233
            G               +  +         +  +     I +E+L  H   ++ + K   
Sbjct: 229 LGMDATRLPASAFVQLPETSRGRSEKAETARIMRRKALHIPEEDLSAHHLMLKRIHKESG 288

Query: 234 -NAIW 237
              IW
Sbjct: 289 GQCIW 293


>gi|219681615|ref|YP_002468001.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682172|ref|YP_002468556.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471303|ref|ZP_05635302.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621905|gb|ACL30061.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624458|gb|ACL30613.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311087677|gb|ADP67756.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 237

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 81/241 (33%), Positives = 116/241 (48%), Gaps = 12/241 (4%)

Query: 5   NKMRKIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N+ R I+ D ETTG     L   N RIIEIGAVE++D   T   F V++ P GR     A
Sbjct: 2   NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           LK+HGIT++FL DKP F  I   F ++           +          E+         
Sbjct: 61  LKVHGITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINT 120

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              IIDTL +AR+  P  +N L++LC RY I  SHR+ H A++DS+LL  +Y+ M  G  
Sbjct: 121 FCSIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTGGQD 180

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIW 237
                  ++    +KE  K +     LK +       T +E D H+K +Q +      +W
Sbjct: 181 S----LFSDNTINYKENFKKLKKNIQLKNNTLRILHPTLKENDLHEKYLQYMKDKSTCLW 236

Query: 238 D 238
           +
Sbjct: 237 N 237


>gi|311087143|gb|ADP67223.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 237

 Score =  120 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 81/241 (33%), Positives = 116/241 (48%), Gaps = 12/241 (4%)

Query: 5   NKMRKIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N+ R I+ D ETTG     L   N RIIEIGAVE++D   T   F V++ P GR     A
Sbjct: 2   NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           LK+HGIT++FL DKP F  I   F ++           +          E+         
Sbjct: 61  LKVHGITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDIGFINQELEILNKKIKINT 120

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              IIDTL +AR+  P  +N L++LC RY I  SHR+ H A++DS+LL  +Y+ M  G  
Sbjct: 121 FCSIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTGGQD 180

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIW 237
                  ++    +KE  K +     LK +       T +E D H+K +Q +      +W
Sbjct: 181 S----LFSDNTINYKENFKKLKKNIQLKNNTLRILHPTLKENDLHEKYLQYMKDKSTCLW 236

Query: 238 D 238
           +
Sbjct: 237 N 237


>gi|240142395|ref|YP_002966905.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
 gi|240012339|gb|ACS43564.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
          Length = 248

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 83/241 (34%), Positives = 125/241 (51%), Gaps = 8/241 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MI     R +V D ETTG D K  DRIIE+G VE+++  +T R F  ++ P  R    +A
Sbjct: 1   MIYSQ--RIVVGDTETTGTDPKGGDRIIEVGFVEIVNGFRTGRHFHSYVNPE-RPVPADA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGITDE LKD P F+++ ++  +F  +  A +  HNA FD+GF + E   ++   LD
Sbjct: 58  TAIHGITDEMLKDAPVFAAVAADIVEFIADSPAIF--HNAPFDLGFFDLEFGLLSLPSLD 115

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            SR+ D+L  AR+  P+     L++LC RYGI  + R+KHGAL+DS LL+DV++ M   G
Sbjct: 116 RSRVTDSLVHARKLLPAGAKAGLDALCNRYGIDRTRRTKHGALMDSELLADVWLAMTGTG 175

Query: 179 S-QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                FG     +      +  +   +       L    +  E + H   + T     +W
Sbjct: 176 GLAHGFGPAAQAEESAAVGRVPLRRHAPEVAASLLRLVPSDHEAERHSSFVATQLVKPLW 235

Query: 238 D 238
            
Sbjct: 236 K 236


>gi|27904727|ref|NP_777853.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
 gi|31340041|sp|Q89AN3|DPO3E_BUCBP RecName: Full=DNA polymerase III subunit epsilon
 gi|27904124|gb|AAO26958.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
          Length = 245

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 78/244 (31%), Positives = 120/244 (49%), Gaps = 16/244 (6%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           RKIV DIETTG++      KN +IIEIGAVE+++   T   F  ++ PN R    ++ K+
Sbjct: 6   RKIVLDIETTGMNPAGCFYKNHKIIEIGAVEMINNVFTGNNFHSYIQPN-RLIDKQSFKI 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPS 121
           HGITD FL DKP F  I  +F ++    +              +    +    +   D  
Sbjct: 65  HGITDNFLLDKPKFHEISVKFLEYITNSDLIIHNAKFDVGFINYELNMINSDKRKISDYC 124

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR+  P  +N L++LC RY I +SHR  H AL+D+ LL+ VY  M      I
Sbjct: 125 NVVDTLPLARQLFPGKKNSLDALCNRYKINVSHRDFHSALIDAKLLAKVYTFMTSFQQSI 184

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG---KNAIW- 237
           +   K +     ++  K    +      +      TK+EL +H K ++ +     N +W 
Sbjct: 185 SIFDKNSNLNSIQKNAKLDSRVPF----RSTLLLATKDELQQHMKYLKYVKQETGNCVWL 240

Query: 238 -DRY 240
            D+Y
Sbjct: 241 EDKY 244


>gi|15616860|ref|NP_240073.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11132278|sp|P57337|DPO3E_BUCAI RecName: Full=DNA polymerase III subunit epsilon
 gi|25299956|pir||G84958 DNA-directed DNA polymerase (EC 2.7.7.7) epsilon chain [imported] -
           Buchnera sp. (strain APS)
 gi|10038924|dbj|BAB12959.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 237

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 82/241 (34%), Positives = 115/241 (47%), Gaps = 12/241 (4%)

Query: 5   NKMRKIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N+ R I+ D ETTG     L   N RIIEIGAVE++D   T   F V++ P GR     A
Sbjct: 2   NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           LK+HGIT++FL DKP F  I   F ++           +          E+         
Sbjct: 61  LKVHGITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINT 120

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              IIDTL IAR   P  +N L++LC RY I  SHR+ H A++DS+LL  +Y+ M  G  
Sbjct: 121 FCSIIDTLKIARELFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTGGQD 180

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIW 237
                  ++    +KE  K +     LK +       T +E D H+K +Q +      +W
Sbjct: 181 S----LFSDNTINYKENFKKLKKNIQLKNNTLRILHPTLKENDLHEKYLQYMKDKSTCLW 236

Query: 238 D 238
           +
Sbjct: 237 N 237


>gi|121609336|ref|YP_997143.1| DNA polymerase III subunit epsilon [Verminephrobacter eiseniae
           EF01-2]
 gi|121553976|gb|ABM58125.1| DNA polymerase III, epsilon subunit [Verminephrobacter eiseniae
           EF01-2]
          Length = 237

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 11/236 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL +   DRIIE+G VELL+   T     ++  P GR +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSADSGDRIIELGCVELLNRKLTGNNLHLYFNP-GRDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +EFLKDKP F+ +  +   +                      EL           R+ DT
Sbjct: 62  NEFLKDKPRFAELVDDILQYLQGAELIIHNAAFDVGFLNKELELAGHPALAHCVERVTDT 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+  +P  RN L++LC R G+  S R+ HGALLD+ LL+DVYI +  G   +     
Sbjct: 122 LAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYIHLTRGQKALLI--- 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
             ++         +  I L     P       +E   H + +  + K      IW 
Sbjct: 179 -ADEAQPSATDLPLLPIDLHALVLP-VLHANAQEQQAHAEVLAQIDKASGGKTIWR 232


>gi|254796828|ref|YP_003081665.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str.
           Illinois]
 gi|254590057|gb|ACT69419.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str.
           Illinois]
          Length = 228

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 131/236 (55%), Gaps = 17/236 (7%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           RK++ D ETTGLD    DR+IEIG VE++D+  T   F ++L P  R+ S EA ++HGIT
Sbjct: 5   RKVILDTETTGLDMKNGDRVIEIGCVEMVDFRITGEIFHIYLNPE-REISKEATRVHGIT 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIID 125
            E L D P F  I  +F  F         AHNA FD+ F+N+E ++   +  +    +ID
Sbjct: 64  FEQLADSPKFIDIADDFLQFIGSSEIV--AHNASFDIRFLNSELIRARQRRLIKLENVID 121

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR+  P S   L++LC+R+ I++  R  HGALLD+ LL+ VYI+ +  GSQ++  F
Sbjct: 122 TLAMARKIFPGSPASLDALCRRFRISLEQREFHGALLDAQLLARVYIE-LSKGSQVSMSF 180

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
                   ++         + K  + L    T EE   H + I+ L K+ +WD  +
Sbjct: 181 LEGSSASSEK--------KMFKEREKLII--TPEESLAHSELIKRL-KDPLWDEIL 225


>gi|309782421|ref|ZP_07677145.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA]
 gi|308918758|gb|EFP64431.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA]
          Length = 242

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 102/190 (53%), Gaps = 2/190 (1%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL++   DR+IEIG VE+++   T R    ++ P  R+    A+ +HGI
Sbjct: 1   MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+EF+ DKP F+ I +E  D+     A             +  +   +       S  ID
Sbjct: 60  TNEFVADKPKFAEIVNEIRDYVQGAEAIIHNAAFDLGFLDMEFQRLGLPPFREHLSGHID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  AR+  P  RN L++LC R GI+ +HR+ HGALLD+ LL++VY+ M  G + +    
Sbjct: 120 TLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDM 179

Query: 186 KTNEDRFFKE 195
             + +    E
Sbjct: 180 LESGEGASAE 189


>gi|241663345|ref|YP_002981705.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12D]
 gi|240865372|gb|ACS63033.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12D]
          Length = 242

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 102/190 (53%), Gaps = 2/190 (1%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL++   DR+IEIG VE+++   T R    ++ P  R+    A+ +HGI
Sbjct: 1   MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+EF+ DKP F+ I +E  D+     A             +  +   +       S  ID
Sbjct: 60  TNEFVADKPKFAEIVNEIRDYVQGAEAIIHNAAFDLGFLDMEFQRLGLPPFREHLSGHID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  AR+  P  RN L++LC R GI+ +HR+ HGALLD+ LL++VY+ M  G + +    
Sbjct: 120 TLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDM 179

Query: 186 KTNEDRFFKE 195
             + +    E
Sbjct: 180 LESGEGASAE 189


>gi|311086562|gb|ADP66643.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 237

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 81/241 (33%), Positives = 115/241 (47%), Gaps = 12/241 (4%)

Query: 5   NKMRKIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N+ R I+ D ETTG     L   N RIIEIGAVE++D   T   F V++ P GR     A
Sbjct: 2   NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           LK+HGIT++FL DKP F  I   F ++           +          E+         
Sbjct: 61  LKVHGITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINT 120

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              IIDTL +AR+  P  +N L++LC RY I  SHR+ H A++DS+LL  +Y+ M  G  
Sbjct: 121 FCSIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTGGQD 180

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIW 237
                  ++    +KE  K +     LK +       T +E D H+K +Q +      +W
Sbjct: 181 S----LFSDNTINYKENFKKLKKNIQLKNNTLRILHPTLKENDLHEKYLQYMKDKSTCLW 236

Query: 238 D 238
            
Sbjct: 237 S 237


>gi|187929152|ref|YP_001899639.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12J]
 gi|187726042|gb|ACD27207.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12J]
          Length = 242

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 66/190 (34%), Positives = 102/190 (53%), Gaps = 2/190 (1%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL++   DR+IEIG VE+++   T R    ++ P  R+    A+ +HGI
Sbjct: 1   MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+EF+ DKP F+ I +E  D+     A             +  +   +       S  ID
Sbjct: 60  TNEFVADKPKFAEIVNEIRDYVQGAEAIIHNAAFDLGFLDMEFQRLGLPAFREHLSGHID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  AR+  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G + +    
Sbjct: 120 TLREARQMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDM 179

Query: 186 KTNEDRFFKE 195
             + +    E
Sbjct: 180 LESGEGASAE 189


>gi|329118044|ref|ZP_08246757.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465932|gb|EGF12204.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 247

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 121/246 (49%), Gaps = 17/246 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE- 58
           M R+   R+I+ D ETTGL S + DRI+E   +E+     T RT  +++ P+ R    E 
Sbjct: 1   MARE---RQIILDTETTGLYSDRGDRILEFAGIEMRKRRLTERTLHLYIHPD-RDIPEEA 56

Query: 59  -ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            A+    +     K+ P F+++  E  DF        I HNA+FDVGF++ E +R+    
Sbjct: 57  AAVHGITLDTLAEKNAPKFAAVGQEIADFLRGAE--LIIHNARFDVGFLDMEFERMGLPT 114

Query: 118 LDP--SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++     + DTL++AR K+P  +  L++LC R  I  S R  HGAL+D  LL++VY+ M 
Sbjct: 115 IEELGCEVTDTLAMAREKYPGQKASLDALCGRLDIDRSKRVYHGALIDCELLAEVYLAMT 174

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---- 231
               Q +    ++++      + T     L++  +    +    EL  H   +  +    
Sbjct: 175 R--EQFDLVGGSDDNNGDTPAQNTRTAAPLVRTGRLKVIKADATELAAHAAILDEINQAT 232

Query: 232 GKNAIW 237
           G + +W
Sbjct: 233 GGHCLW 238


>gi|325267110|ref|ZP_08133779.1| DNA-directed DNA polymerase III epsilon subunit [Kingella
           denitrificans ATCC 33394]
 gi|324981463|gb|EGC17106.1| DNA-directed DNA polymerase III epsilon subunit [Kingella
           denitrificans ATCC 33394]
          Length = 245

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 117/233 (50%), Gaps = 9/233 (3%)

Query: 8   RKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           R+I+ D ETTG +       DR+IE   +E+++   T     +++ P  R    EA  +H
Sbjct: 4   RQIILDTETTGFEHSRADNPDRMIEFAGLEMVNRQFTQNDLHLYIHPE-RDIPAEATAVH 62

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSR 122
           GIT + L DKP F+ +  + +DF          HNAKFDVGF+NAE  R+    +D    
Sbjct: 63  GITLDDLADKPVFADVAQQIFDFLKGAELI--IHNAKFDVGFLNAEFARVGLPNIDSVCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+++P  +N L++LC R G+  S R  HGAL+D  LL  VY+ M  G   ++
Sbjct: 121 VVDTLEMARKRYPGQKNSLDALCTRLGVDRSRRVLHGALIDCELLGGVYLAMTRGQFSLD 180

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
             F  +         K     + L   K      ++EE   H+  +  L K A
Sbjct: 181 DAFAADNAVSAGNAAKGAL-AAPLSAGKLKVQAASEEECAAHENYLDGLDKAA 232


>gi|74317680|ref|YP_315420.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC
           25259]
 gi|74057175|gb|AAZ97615.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
           ATCC 25259]
          Length = 232

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 2/196 (1%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGLD  +  RIIE+ AVE+++   T      ++ P+ R     A+++HGI
Sbjct: 1   MRQIILDTETTGLDPAQGHRIIEVAAVEMVNRRLTGNHLHRYVNPD-RDIDAGAMQVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL+DKP F  I  EF DF +                 +   L  +         + D
Sbjct: 60  TPEFLQDKPRFGDIAREFVDFIDGAELIIHNAPFDVGFLNMELRLLGMPLLATCCGGVTD 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+  HP  RN+L++LCKRY +  + R+ HGALLD  LL+ VY+ +  G   ++ G 
Sbjct: 120 TLAMAKALHPGQRNNLDALCKRYAVDNTARTLHGALLDCELLAAVYLALTRGQESLSIGL 179

Query: 186 KTNEDRFFKEEKKTVP 201
           +       +   +  P
Sbjct: 180 EIPRSESGRAADRPRP 195


>gi|218513681|ref|ZP_03510521.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3]
          Length = 229

 Score =  118 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 96/192 (50%), Positives = 129/192 (67%), Gaps = 3/192 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK +F+ +  E   FF +      AHNA FD+GFINAE  RI   P+ P R++DT
Sbjct: 61  DEFLKDKKAFAEVAEEILAFFGDAKWI--AHNATFDMGFINAEFARIGLPPILPERVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRKHP   N L++LC+RYG+  SHR+KHGALLDS LL++VYI+M+  G Q   G  
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMIG-GRQAALGLG 177

Query: 187 TNEDRFFKEEKK 198
            +         +
Sbjct: 178 LSGQSGQTARGE 189


>gi|294788746|ref|ZP_06753987.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC
           29453]
 gi|294483228|gb|EFG30914.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC
           29453]
          Length = 272

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 112/238 (47%), Gaps = 10/238 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           MI     R+I+ D ETTGL +      DR+IE   +E+++   T R   + + P  R+ S
Sbjct: 1   MILDKDKRQIILDTETTGLYANAAENPDRLIEFAGLEMMNRQLTGRNLHLLIHPQ-REIS 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-INAELQRINK 115
            EA  +H IT   L DKP F+ +  + +DF        I HNAKFDVGF      +    
Sbjct: 60  EEATAVHNITLSQLVDKPIFAQVAQQIFDFIKGAE--LIIHNAKFDVGFLNAEFARVGLP 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +      I DTL +A+  +   +N L++LC R G+  S R  HGAL+D  LLS+VY+ M 
Sbjct: 118 NVETICEITDTLEMAKNLYHGQKNSLDALCNRLGVDRSKRVFHGALIDCELLSEVYLGMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
               Q +      ++    E  + V   +  +          ++EL  H+  +  L K
Sbjct: 178 R--GQFSLMADWEDEDENSEINQIVVQHTFQRTGSLKVVLANEDELAAHEAILADLDK 233


>gi|17546591|ref|NP_519993.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum GMI1000]
 gi|17428890|emb|CAD15574.1| probable dna polymerase III (epsilon chain) protein [Ralstonia
           solanacearum GMI1000]
          Length = 242

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/190 (35%), Positives = 101/190 (53%), Gaps = 2/190 (1%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR+IEIG VEL++   T R    +L P  R+    A+ +HGI
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYLNPE-REIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+EF+ DKP F+ +  E  D+     A             +  +   +       +  ID
Sbjct: 60  TNEFVADKPKFAEVVDEIRDYVQGAEAIIHNAAFDLGFLDMEFKRLGLPPFREHLAGHID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  ARR  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G + +    
Sbjct: 120 TLLDARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDM 179

Query: 186 KTNEDRFFKE 195
             + +    E
Sbjct: 180 LESGETAAAE 189


>gi|238762660|ref|ZP_04623629.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC
           33638]
 gi|238698965|gb|EEP91713.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC
           33638]
          Length = 259

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 81/246 (32%), Positives = 129/246 (52%), Gaps = 11/246 (4%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 12  RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           HGI+DEFL DKP+F+ I SEF +F        + HNA FD+GF++ E + + +D      
Sbjct: 71  HGISDEFLADKPTFADIASEFLEFIRGAE--LVIHNAAFDIGFMDYEFRMLQQDIPKTET 128

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G +
Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            ++F  + ++ +    E                         +     +   G + +W  
Sbjct: 189 SLSFSMEGDQSQNNSSEDIQRITRPASGLKIIYAAEEEIAAHESRLDLVMKKGGSCLWRM 248

Query: 240 YISSNQ 245
            + +  
Sbjct: 249 PLETED 254


>gi|197335831|ref|YP_002156764.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11]
 gi|197317321|gb|ACH66768.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11]
          Length = 223

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 85/221 (38%), Positives = 126/221 (57%), Gaps = 10/221 (4%)

Query: 21  SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80
            +  RI+EIGAVE+++   T   F V++ P+ R    EA+ +HGITDEFL DKP +  I 
Sbjct: 9   YEGHRIVEIGAVEIINRKLTGNHFHVYIKPD-RLIDLEAIDVHGITDEFLYDKPEYKDIH 67

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSRIIDTLSIARRKHPSS 137
            EF +F        +AHNA FDVGF++ E  ++NK         +I DTL++A++  P  
Sbjct: 68  DEFLEFIKGAE--LVAHNAPFDVGFMDYEFSKLNKLIGTTDQYCKITDTLAMAKKIFPGK 125

Query: 138 RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEK 197
           RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G + ++F    N     +E  
Sbjct: 126 RNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLSFSSGDNSSDSDEETI 185

Query: 198 KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           K +       R      R T +EL+ H+K +  +G   +W 
Sbjct: 186 KRLN----SGRKGLKVLRATADELEAHEKRLDIVGDACLWR 222


>gi|295698439|ref|YP_003603094.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola
           USDA]
 gi|291157346|gb|ADD79791.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola
           USDA]
          Length = 249

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 115/242 (47%), Gaps = 13/242 (5%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           RKI+ D ETTG+       +   IIEIGAVE+++   T   F V++ P  R   P+A ++
Sbjct: 7   RKIILDTETTGMSSSGHPYEGHNIIEIGAVEMINRELTGNLFHVYINPK-RSVDPKAFEI 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPS 121
           H I+D FLKDKP+FS I  +F DF           +          + ++          
Sbjct: 66  HKISDNFLKDKPTFSEIVDDFVDFIRNSELIIHNASFDVGFINHELSRIEYSFCSIKKIC 125

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           RI DTL IAR   P  +N L++LC RY I  S RS H A+LD+ +LS++Y  M     QI
Sbjct: 126 RITDTLKIARSLFPGKKNSLDALCDRYHIDRSKRSVHSAILDAKILSEIYKLMTG--GQI 183

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI----QTLGKNAIW 237
           +F F  + ++      +        +  + L      +E   H+  +    + +GK  +W
Sbjct: 184 SFNFDHDLEKKENFLNQYYFQRKRKRTRESLVIYANSKEQYCHEFILNTIEKKIGKKTLW 243

Query: 238 DR 239
            +
Sbjct: 244 RK 245


>gi|71892007|ref|YP_277737.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796113|gb|AAZ40864.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 249

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 78/250 (31%), Positives = 127/250 (50%), Gaps = 13/250 (5%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           +  N +R+IV D ETTG++      +  R+IEIGAVE+++   T+ TF V+L PN R   
Sbjct: 1   MSTNIIRQIVLDTETTGMNKFGPHYEGHRVIEIGAVEIINRHLTDNTFHVYLKPN-RMID 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINK 115
            EA+++HGI+D+FLK+KP FS I +EF  F           +             +  +K
Sbjct: 60  IEAIQVHGISDQFLKNKPIFSEIINEFLTFIRGSELIIHNASFDLGFLNQELRICKANSK 119

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDSHLLSDVYIKM 174
                  +ID+L +AR+K P  RN L++LC+RY I   + R+ H ALLD+ LL++V++ M
Sbjct: 120 KIESYCTVIDSLKLARKKFPGQRNSLDALCERYSINNGNRRNLHSALLDARLLANVFLSM 179

Query: 175 MVGGSQINFG--FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231
             G  ++ F     TN           + N   + +         ++E   H++ + ++ 
Sbjct: 180 SGGQIKMKFMEIMNTNISNNKINNIIGLNNTKCINKRSLRIIYANEQEKLAHEEYLDSIQ 239

Query: 232 --GKNAIWDR 239
              K  IW +
Sbjct: 240 QLNKFCIWRQ 249


>gi|300691174|ref|YP_003752169.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07]
 gi|299078234|emb|CBJ50881.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07]
          Length = 242

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/180 (37%), Positives = 100/180 (55%), Gaps = 2/180 (1%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR+IEIG VEL++   T R    ++ P  R+    A+ +HGI
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+EF+ DKP F+ I +E  D+     A             +  +  ++       +  ID
Sbjct: 60  TNEFVADKPKFAEIVAEIRDYVQGAEAIIHNAAFDLGFLDMEFQRLKLPSFREHLAGHID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  ARR  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G + +    
Sbjct: 120 TLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDM 179


>gi|299066469|emb|CBJ37657.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum CMR15]
          Length = 242

 Score =  116 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 99/190 (52%), Gaps = 2/190 (1%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR+IEIG VEL++   T R    +  P  R+    A+ +HGI
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYFNPE-RQIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+EF+ DKP F+ +  E  D+     A             +  +   +          ID
Sbjct: 60  TNEFVADKPKFAEVVDEIRDYVQGAEAIIHNAAFDLGFLDMEFKRLGLPSFREHLDGHID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  ARR  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G + +    
Sbjct: 120 TLLDARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDM 179

Query: 186 KTNEDRFFKE 195
             + +    E
Sbjct: 180 LESGETAAAE 189


>gi|240950342|ref|ZP_04754612.1| DNA polymerase III subunit epsilon [Actinobacillus minor NM305]
 gi|240295153|gb|EER45972.1| DNA polymerase III subunit epsilon [Actinobacillus minor NM305]
          Length = 253

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 86/249 (34%), Positives = 130/249 (52%), Gaps = 17/249 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M+ +   R++V D ETTG++          IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MLEQEIHRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKP+F+ I  EF  F        + HNA FDVGF++ E   +  
Sbjct: 60  EEEAIKVHGITNEFLQDKPTFAEIVDEFVAFIKGAE--LVIHNAPFDVGFMDHEFSFLAN 117

Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P        + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCTVTDSLALARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD----KTI 228
            M     QI    +   D   + +               +  +  + EL+ H        
Sbjct: 178 MMTG--GQIALLAEEEHDENPQVDLLEEGPKIAFDTSNSVILKADESELEAHQLFLKLLY 235

Query: 229 QTLGKNAIW 237
           +   KN IW
Sbjct: 236 KKSKKNCIW 244


>gi|88608300|ref|YP_506355.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600469|gb|ABD45937.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 228

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 133/236 (56%), Gaps = 17/236 (7%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           RK++ D ETTGLD    DR+IEIG VE++D+  T   F ++L P  R+ S EA ++HGIT
Sbjct: 5   RKVILDTETTGLDMKNGDRVIEIGCVEVVDFRITGEIFHIYLNPE-REISKEATRVHGIT 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIID 125
            E L D P F  I  +F  F +       AHNA FD+ F+N+E ++   +  +    +ID
Sbjct: 64  FEQLADSPKFIDIADDFLKFIDSSEIV--AHNASFDIRFLNSELIRARQRRLIKLENVID 121

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR+  P S   L++LC+R+ I++  R  HGALLD+ LL+ VYI+ +  GSQ++  F
Sbjct: 122 TLAMARKIFPGSPASLDALCRRFRISLEQRELHGALLDAQLLARVYIE-LSKGSQVSMSF 180

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
                   ++         + K  + L    T EE  EH + I+ L KN +WD  +
Sbjct: 181 LEGSSVSSEK--------KMFKEREKLII--TPEESLEHSELIRRL-KNPLWDEIL 225


>gi|146329568|ref|YP_001209798.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus
           VCS1703A]
 gi|146233038|gb|ABQ14016.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus
           VCS1703A]
          Length = 233

 Score =  115 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 86/235 (36%), Positives = 128/235 (54%), Gaps = 14/235 (5%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R ++FD ETTG++      ++  RIIEIG VEL+D   T   F  +L P  +   P+A K
Sbjct: 4   RSVIFDTETTGMNFESDNKAEGHRIIEIGCVELIDRVPTEHYFHCYLNPE-QPVDPQAFK 62

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--D 119
           +HGI+DEFL DKP F  +  EF  +    +   +AHN  FD  FI+ ELQ    D    D
Sbjct: 63  VHGISDEFLADKPFFKDVLPEFEAYLASADE-LVAHNIAFDRQFIDRELQLAGCDYRLGD 121

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              ++D+L IAR K   +RN+L++LCKR+G+  + R  HGALLD+ LL++VY+K+  G S
Sbjct: 122 KFTLVDSLKIAREKFAGARNNLDALCKRFGVDNTGRELHGALLDAQLLAEVYLKLTGGQS 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP-LFTRITKEELDEHDKTIQTLGK 233
            ++F           E+K      +  K     L   + + E   H+K ++ L +
Sbjct: 182 DLSFAHPMMASARRAEQKTAA---TFAKTPCAWLPVDVPEAERALHEKILKQLKE 233


>gi|332967672|gb|EGK06783.1| DNA-directed DNA polymerase III epsilon subunit [Kingella kingae
           ATCC 23330]
          Length = 252

 Score =  115 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 12/253 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           + +  +R+I+ D ETTG +       DR+IE   +E+++   T     +++ P    N  
Sbjct: 1   MTETPIRQIILDTETTGFEHSAAENPDRMIEFAGLEMVNRQFTKNNLHLYIHPQRDINPD 60

Query: 58  EA-LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
              +    +     ++ P F+ +  + +DF          HNAKFDVGF++AE  R+   
Sbjct: 61  AIAVHGITLEKLESENAPVFAEVAQQIFDFIKGAELI--IHNAKFDVGFLDAEFARVGLP 118

Query: 117 PLDPSRII-DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +     + DTL +AR ++P  +N L++LC R  +  S R  HGAL+D  LL +VY+ M 
Sbjct: 119 KVKTICTVVDTLEMARDRYPGQKNSLDALCNRLDVDRSRRVLHGALIDCELLGEVYLAMT 178

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK-- 233
            G   ++  F ++                L + +       + EEL EH++ +  L K  
Sbjct: 179 RGQFSLDAAFASDVAESSASPVIATTATLLPRPEYLKVQAASPEELAEHEEYLNQLDKAV 238

Query: 234 --NAIWDRYISSN 244
             + I+ +  S N
Sbjct: 239 DGSCIYRQTDSVN 251


>gi|294670031|ref|ZP_06734988.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308152|gb|EFE49395.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 244

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 107/246 (43%), Gaps = 19/246 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE- 58
           M R+   R+I+ D ETTGL + + DR++E   +E+     T     +++ P+ R    E 
Sbjct: 1   MARE---RQIILDTETTGLYADRGDRMLEFAGIEMKKRQLTMNNLHLYIHPD-RDIPEEA 56

Query: 59  -ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            A+    +     ++ P F  +  +  DF        I HNA+FDVGF+N E  R+    
Sbjct: 57  AAVHGITLEQLEERNAPKFEQVGRQIADFLRGAE--LIIHNARFDVGFLNMEFARMGLPS 114

Query: 118 LD--PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++     I DTL++AR K P  +  L++LC R  +  S R  HGAL+D  LL++VY+ M 
Sbjct: 115 IEELDCEITDTLAMAREKFPGQKASLDALCSRLDVDRSKRVLHGALIDCELLAEVYLAMT 174

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK-- 233
                  F     E+     +                  R   EE   H + +  L K  
Sbjct: 175 REQ----FDLVGAEETAAAAQSADTGIAVQTAGGGLRILRADAEETAAHLEYLAELDKAS 230

Query: 234 --NAIW 237
               +W
Sbjct: 231 GGQCLW 236


>gi|32490818|ref|NP_871072.1| hypothetical protein WGLp069 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166024|dbj|BAC24215.1| dnaQ [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 246

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 80/241 (33%), Positives = 119/241 (49%), Gaps = 11/241 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++ N  R+IV D ETTG++         RIIEIGA+E+++   T R F  +L P+ R   
Sbjct: 1   MKINTERQIVLDTETTGMNKNGPHYYGHRIIEIGAIEMINRRLTGRCFHTYLKPD-RLVE 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            EA K+HGI+DEFL  +P+F  I  +F +F                      +L   N +
Sbjct: 60  IEAFKIHGISDEFLFFQPTFEEIMEKFINFIKGSELIIHNSVFDIGFINNEIQLCNKNLN 119

Query: 117 PLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++    +IDTL +AR   P  RN+L++L  RYGI  + R  HGALLD+ +LS+VY+ M 
Sbjct: 120 NINYYCSVIDTLKLARNIFPGKRNNLDALSDRYGIDTTKRILHGALLDAEILSNVYLLMT 179

Query: 176 VGGSQINFG----FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
            G   INF           +          N    K  KP+     +EE+ EH K ++++
Sbjct: 180 GGQIPINFSKKKNNNFINKKIKNNFNNFKKNKKYNKIIKPIVIYANEEEIHEHKKFMKSI 239

Query: 232 G 232
            
Sbjct: 240 N 240


>gi|307248305|ref|ZP_07530330.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307263945|ref|ZP_07545548.1| hypothetical protein appser13_13530 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306855175|gb|EFM87353.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306870707|gb|EFN02448.1| hypothetical protein appser13_13530 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 239

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 11/224 (4%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSE 82
              IIEIGAVE+++   T RTF V++ P  R+   EA+K+HGIT+EFL+DKP F+ +  E
Sbjct: 10  GHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVDEEAIKVHGITNEFLQDKPVFAEVADE 68

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRIIDTLSIARRKHPSSRN 139
           F +F        I HNA FDV F++ E   +   P        + D+L++AR+ +P  RN
Sbjct: 69  FIEFIKGAE--LIIHNAPFDVAFMDQEFSYLENPPPKTAEMCSVTDSLAVARKMYPGKRN 126

Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT 199
           +L++LC R GI  S R  HGALLD+ +L+DV++ M  G   +  G +             
Sbjct: 127 NLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLAL-LGEEDATATHENVADLG 185

Query: 200 VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239
           +  I+  +    +   +++EE   H++ ++ + K    N IW R
Sbjct: 186 LGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWMR 229


>gi|262368670|ref|ZP_06061999.1| ribonuclease HI [Acinetobacter johnsonii SH046]
 gi|262316348|gb|EEY97386.1| ribonuclease HI [Acinetobacter johnsonii SH046]
          Length = 474

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 12/225 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P       E +  HGI+
Sbjct: 247 RQLILDTETTGFYYQDGDRIIEVGAIEMVNRKLTGSSIHIYINPKKPVGDSENV--HGIS 304

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IID 125
           D+FLKDKP +  I    + +         AHNA FD+ F++ E +R     L     + D
Sbjct: 305 DDFLKDKPLYQEIADTLFAYLKGAEII--AHNASFDMNFLDMEFKRAGFVALSEVCAVTD 362

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +L+DVY+ M  G    +   
Sbjct: 363 TLAMAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILADVYLAMTGGQVSFDMDA 422

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
            ++ ++   + ++   +I L         + + EEL+ H+  ++ 
Sbjct: 423 LSHSEQQNGQSQRQALDIELA------VIQPSAEELEAHETWVKQ 461


>gi|299771048|ref|YP_003733074.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. DR1]
 gi|298701136|gb|ADI91701.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. DR1]
          Length = 458

 Score =  110 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P       E +  HGI+
Sbjct: 231 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQKPVGDSENI--HGIS 288

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125
           D FLKDKP ++ I    +D+         AHNA FD+ F++ E +R     L     + D
Sbjct: 289 DNFLKDKPLYAEIADTLFDYLKGAEII--AHNATFDMNFLDMEFRRAGLPALSEVCEVTD 346

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M  G    +   
Sbjct: 347 TLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDIDA 406

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
            +  +       KT   I             ++EEL+ H+  ++   K 
Sbjct: 407 LSQSENSQNTTNKTRIQID------LPVIYPSEEELNTHETWVKEFEKK 449


>gi|307252915|ref|ZP_07534803.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859553|gb|EFM91578.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 239

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 11/224 (4%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSE 82
              IIEIGAVE+++   T RTF V++ P  R+   EA+K+HGIT+EFL+DKP F+ +  E
Sbjct: 10  GHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVEEEAIKVHGITNEFLQDKPVFAEVADE 68

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRIIDTLSIARRKHPSSRN 139
           F +F        I HNA FDV F++ E   +   P        + D+L++AR+ +P  RN
Sbjct: 69  FIEFIKGAE--LIIHNAPFDVAFMDQEFSYLENPPPKTAEMCSVTDSLAVARKMYPGKRN 126

Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT 199
           +L++LC R GI  S R  HGALLD+ +L+DV++ M  G   +  G +             
Sbjct: 127 NLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLAL-LGEEDATATHENVADLG 185

Query: 200 VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239
           +  I+  +    +   +++EE   H++ ++ + K    N IW R
Sbjct: 186 LGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWMR 229


>gi|262279776|ref|ZP_06057561.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202]
 gi|262260127|gb|EEY78860.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202]
          Length = 458

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 119/229 (51%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P       E +  HGI+
Sbjct: 231 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQKPVGDSENI--HGIS 288

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125
           D FLKDKP ++ I    +D+         AHNA FD+ F++ E +R     L     + D
Sbjct: 289 DNFLKDKPLYADIADTLFDYLKGAEII--AHNATFDMNFLDMEFRRAGLPALSEVCEVTD 346

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M  G    +   
Sbjct: 347 TLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDIDA 406

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
            +  +       KT   I      +      ++EEL+ H+  ++   K 
Sbjct: 407 LSQSENSLNTANKTRVQI------ELPVILPSEEELNTHETWVKEFEKK 449


>gi|196003864|ref|XP_002111799.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens]
 gi|190585698|gb|EDV25766.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens]
          Length = 289

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 105/204 (51%), Gaps = 5/204 (2%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++V D ETTGL  +   RIIEIG +EL+D+  T+RTFQ ++ P     S  A ++H ++
Sbjct: 14  REVVLDTETTGLSVRTGHRIIEIGCLELIDHQPTSRTFQCYINPK-FPVSERAFEVHHLS 72

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++FL+  P+F  I  +F DF  E     I HN  FD+ FIN E Q++N   +   R+IDT
Sbjct: 73  NKFLEGFPTFDGIVQDFRDFIQE--DTLIIHNGHFDIKFINNEFQKLNIPEISFERVIDT 130

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL-LDSHLLSDVYIKMMVGGSQINFGF 185
           + +AR+ +P     L+SLC R+ I  S RS       D  LL  VY K++     +    
Sbjct: 131 MLMARKLYPRQPASLDSLCDRFNIDKSSRSLGHGALTDVKLLQLVYAKLLKDQDALGLNV 190

Query: 186 KTNEDRFFKEEKKTVPNISLLKRD 209
                    +      ++S   R 
Sbjct: 191 INQSATQTSKSIVNKTDMSKQHRP 214


>gi|260550748|ref|ZP_05824956.1| ribonuclease HI [Acinetobacter sp. RUH2624]
 gi|260406254|gb|EEW99738.1| ribonuclease HI [Acinetobacter sp. RUH2624]
          Length = 459

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 124/229 (54%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P   K   E+  +HGI+
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGESENIHGIS 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125
           D+FLKDKP ++ I    +++         AHNA FD+ F++ E +R+    L     + D
Sbjct: 290 DDFLKDKPVYADIADTLFEYLKGAEII--AHNATFDMNFLDMEFRRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M     Q++F  
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 405

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    ++K T   I +           + EEL+ H+  ++   K 
Sbjct: 406 DALSQSESDQQKTTKARIQID----LPVIYPSDEELNIHETWVKEFEKK 450


>gi|262375943|ref|ZP_06069174.1| ribonuclease HI [Acinetobacter lwoffii SH145]
 gi|262309037|gb|EEY90169.1| ribonuclease HI [Acinetobacter lwoffii SH145]
          Length = 458

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 123/229 (53%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P        ++ +HGIT
Sbjct: 231 RQLILDTETTGFYYQDGDRIIEVGALEMINRKLTGSSIHIYINPKTPVGD--SVNVHGIT 288

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125
           DEFL+DKP F  I    +D+ +       AHNA FD+ F++ E +R     L     + D
Sbjct: 289 DEFLQDKPLFEEISQVLFDYLHGAEII--AHNATFDMNFLDMEFKRAGFKALSEVCDVTD 346

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M     Q++F  
Sbjct: 347 TLALAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILSDVYLAMTG--GQVSFDI 404

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                   +  +  +  + +    +      +++EL EH+  ++   + 
Sbjct: 405 DALSQSEDQNSRSGMARVEI----ELPVILPSEQELQEHENWVKQFEEK 449


>gi|255320390|ref|ZP_05361574.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens
           SK82]
 gi|262379328|ref|ZP_06072484.1| ribonuclease HI [Acinetobacter radioresistens SH164]
 gi|255302585|gb|EET81818.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens
           SK82]
 gi|262298785|gb|EEY86698.1| ribonuclease HI [Acinetobacter radioresistens SH164]
          Length = 455

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 120/224 (53%), Gaps = 12/224 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P        ++ +HGIT
Sbjct: 228 RQLILDTETTGFYFQDGDRIIEVGAIEMVNRKLTGSSIHIYINPEKPVGD--SVDIHGIT 285

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125
           DEFL+DKP ++ I    +++         AHNA FD+ F++ E +R     L     + D
Sbjct: 286 DEFLQDKPRYAEIAEVLFNYLKGAEII--AHNASFDMNFLDMEFKRAGFPALSEVCEVTD 343

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M  G    +   
Sbjct: 344 TLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDA 403

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
            +  +    +  + V N+             + EEL  H++ +Q
Sbjct: 404 LSQSEISQSQASRQVINVD------LPVIVPSPEELAAHEEWVQ 441


>gi|260557363|ref|ZP_05829578.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606]
 gi|260408989|gb|EEX02292.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606]
          Length = 459

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P        ++++HGIT
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVQVHGIT 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125
           DEFL DKP ++ I    +++         AHNA FD+ F++ E +R+    L     + D
Sbjct: 290 DEFLVDKPKYAEIADTLFEYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M     Q++F  
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 405

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    ++K T   + +    +      + EEL+ H+  ++   K 
Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450


>gi|254707409|ref|ZP_05169237.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|261314895|ref|ZP_05954092.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|261303921|gb|EEY07418.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
          Length = 201

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 86/204 (42%), Positives = 125/204 (61%), Gaps = 4/204 (1%)

Query: 40  TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
           T RTF  F+ P GR+  P+AL +HGI++E L DKP F+ I  EF +F +      +AHNA
Sbjct: 1   TGRTFHKFINPQGRQVHPDALAVHGISNEQLLDKPVFAEILDEFLEFIDGAR--LVAHNA 58

Query: 100 KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
            FD+GFINAEL R+++  +    I+DTL++ARRKHP   N L++LCKRYGI  SHR+ HG
Sbjct: 59  MFDLGFINAELARLDQAEITSEHIVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHG 118

Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITK 218
           ALLD+ +L++VYI+++  G Q   G          + +      + L  R +PL  RI+ 
Sbjct: 119 ALLDAQILAEVYIELIG-GKQTALGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISD 177

Query: 219 EELDEHDKTIQTLGKNAIWDRYIS 242
            E   H   ++ +G  A+W +Y+S
Sbjct: 178 AERAAHAALVEKMGDKAVWKKYLS 201


>gi|169796679|ref|YP_001714472.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter baumannii AYE]
 gi|184157414|ref|YP_001845753.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii ACICU]
 gi|213156097|ref|YP_002318517.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii
           AB0057]
 gi|215484167|ref|YP_002326392.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           AB307-0294]
 gi|301344775|ref|ZP_07225516.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB056]
 gi|301510946|ref|ZP_07236183.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB058]
 gi|169149606|emb|CAM87496.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
           ,epsilon subunit, 3-5 exonucleolytic proofreading
           function] [Acinetobacter baumannii AYE]
 gi|183209008|gb|ACC56406.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU]
 gi|213055257|gb|ACJ40159.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii
           AB0057]
 gi|213985858|gb|ACJ56157.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           AB307-0294]
 gi|322507294|gb|ADX02748.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           1656-2]
 gi|323517313|gb|ADX91694.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 459

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P        ++++HGIT
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVQVHGIT 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125
           DEFL DKP ++ I    +++         AHNA FD+ F++ E +R+    L     + D
Sbjct: 290 DEFLVDKPKYAEIADTLFEYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M     Q++F  
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 405

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    ++K T   + +    +      + EEL+ H+  ++   K 
Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450


>gi|239503330|ref|ZP_04662640.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB900]
          Length = 459

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P        ++++HGIT
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVQVHGIT 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125
           DEFL DKP ++ I    +++         AHNA FD+ F++ E +R+    L     + D
Sbjct: 290 DEFLVDKPKYAEIADTLFEYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M     Q++F  
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 405

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    ++K T   + +    +      + EEL+ H+  ++   K 
Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450


>gi|169633080|ref|YP_001706816.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter baumannii SDF]
 gi|169151872|emb|CAP00707.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
           ,epsilon subunit, 3-5 exonucleolytic proofreading
           function] [Acinetobacter baumannii]
          Length = 459

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P        ++++HGIT
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVQVHGIT 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125
           DEFL DKP ++ I    +++         AHNA FD+ F++ E +R+    L     + D
Sbjct: 290 DEFLVDKPKYAEIADTLFEYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M     Q++F  
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 405

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    ++K T   + +    +      + EEL+ H+  ++   K 
Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450


>gi|126641104|ref|YP_001084088.1| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978]
          Length = 459

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P        ++++HGIT
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVQVHGIT 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125
           DEFL DKP ++ I    +++         AHNA FD+ F++ E +R+    L     + D
Sbjct: 290 DEFLVDKPKYAEIADTLFEYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M     Q++F  
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 405

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    ++K T   + +    +      + EEL+ H+  ++   K 
Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450


>gi|332852350|ref|ZP_08434135.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013150]
 gi|332870148|ref|ZP_08439060.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013113]
 gi|332875093|ref|ZP_08442929.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6014059]
 gi|332729293|gb|EGJ60634.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013150]
 gi|332732415|gb|EGJ63671.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013113]
 gi|332736710|gb|EGJ67701.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6014059]
          Length = 497

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P        ++++HGIT
Sbjct: 270 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVQVHGIT 327

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFL DKP ++ I    +++         AHNA FD+ F++ E +R+    L     +  
Sbjct: 328 DEFLVDKPKYAEIADTLFEYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 385

Query: 127 LSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                +  HP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M     Q++F  
Sbjct: 386 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 443

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    ++K T   + +    +      + EEL+ H+  ++   K 
Sbjct: 444 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 488


>gi|193076772|gb|ABO11486.2| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978]
          Length = 497

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P        ++++HGIT
Sbjct: 270 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVQVHGIT 327

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFL DKP ++ I    +++         AHNA FD+ F++ E +R+    L     +  
Sbjct: 328 DEFLVDKPKYAEIADTLFEYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 385

Query: 127 LSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                +  HP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M     Q++F  
Sbjct: 386 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 443

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    ++K T   + +    +      + EEL+ H+  ++   K 
Sbjct: 444 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 488


>gi|118602424|ref|YP_903639.1| DNA polymerase III, epsilon subunit [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567363|gb|ABL02168.1| DNA polymerase III, epsilon subunit [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 222

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 8/226 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGI 65
           R IV D ETTG++  +  RIIEIG  E++D   T    +  ++ P+       ++++HGI
Sbjct: 3   RLIVLDTETTGIEPSEGHRIIEIGCTEIVDRQITENNEYHEYIQPSRNVGD--SVRIHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+FL +KP F +I   F  +                      +L  I++   D   IID
Sbjct: 61  TDKFLTNKPKFKAIVKTFLTYIEGATLIIHNAPFDLGFLNHELKLIGIDERIEDKCNIID 120

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L +++++ P + ++L++LC+R+ I  S R+ HGALLD+ +L+ VY+ M  G S      
Sbjct: 121 SLELSKQQRPGTLHNLDALCRRFEINSSARTVHGALLDAKILAQVYLAMTGGQST----L 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
             NE    ++              K       K+EL  H    + +
Sbjct: 177 FNNEQTINEQANTNNIIRVERAIGKIKVVYANKQELAAHASYFEKI 222


>gi|301596826|ref|ZP_07241834.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB059]
          Length = 438

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P        ++++HGIT
Sbjct: 211 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVQVHGIT 268

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFL DKP ++ I    +++         AHNA FD+ F++ E +R+    L     +  
Sbjct: 269 DEFLVDKPKYAEIADTLFEYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 326

Query: 127 LSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                +  HP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M     Q++F  
Sbjct: 327 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 384

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    ++K T   + +    +      + EEL+ H+  ++   K 
Sbjct: 385 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 429


>gi|50084331|ref|YP_045841.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. ADP1]
 gi|49530307|emb|CAG68019.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
           ,epsilon subunit, 3-5 exonucleolytic proofreading
           function] [Acinetobacter sp. ADP1]
          Length = 450

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 121/225 (53%), Gaps = 12/225 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P        ++ +HGIT
Sbjct: 223 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVDVHGIT 280

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125
           DEFL DKP ++ I    +++         AHNA FD+ F++ E +R     L     + D
Sbjct: 281 DEFLLDKPKYAEIAEPLFEYLKGAEII--AHNASFDMNFLDMEFKRAGLPTLSEVCEVTD 338

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M     Q++F  
Sbjct: 339 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 396

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
                R   + K     I           R +  EL++H++ +++
Sbjct: 397 DALSQREQNQRKGQRARIEAD----LPVIRPSANELEKHNEWVKS 437


>gi|319941413|ref|ZP_08015741.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B]
 gi|319805033|gb|EFW01863.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B]
          Length = 246

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 82/241 (34%), Positives = 126/241 (52%), Gaps = 23/241 (9%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSK---TNRTFQVFLCPNGRKNSPEALKLH 63
           R I  D ETTGLD++  DRIIEIG V +             Q+F+ P  R+   EA+ +H
Sbjct: 6   RLITLDTETTGLDAQNGDRIIEIGCVAIEGRMMRSTDEHHLQIFVNPE-REVPEEAVAIH 64

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSR 122
           GIT E+L+DKP F+ I  +F DF     +  + HNA FD GF++ EL R  +  + D  +
Sbjct: 65  GITTEYLQDKPKFAEIADKFIDFVKG--STLVIHNAAFDTGFLDMELGRCGRGKISDYCQ 122

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDT+ +A++  P     L+SLC+ Y I  S+R+ HGALLD+ LL++VY+ +  G   + 
Sbjct: 123 VIDTVKLAKKLLPGRAVSLDSLCRYYEIDNSNRTLHGALLDAELLAEVYLSLSRGQDTLT 182

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
                       E+   +P +     D  +  + + EEL EH++ +    K       W 
Sbjct: 183 L---------VNEDIDNLPPMPAF--DASIVIKASPEELAEHERILDIAEKKAKATPAWR 231

Query: 239 R 239
           +
Sbjct: 232 K 232


>gi|319779077|ref|YP_004129990.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9]
 gi|317109101|gb|ADU91847.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9]
          Length = 239

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 14/236 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  K   R+IE+G  E++D   T    Q++  P  R+   EALK+HGI
Sbjct: 1   MRQICLDTETTGLSWKDGHRVIELGCCEIIDGLLTGNNLQIYFNPE-REVDEEALKVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++EFL DKP FS    +  ++  +     + HNA+FD+GF+N EL    K  L+      
Sbjct: 60  SNEFLSDKPLFSDKADKIIEYLKDAQ--LVIHNAEFDMGFLNYELSLCGKPKLETFIHNP 117

Query: 126 TLSIARRKHPSSRND--------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +        +  +            L        + R  HGALLD+ +L+ V+IK+  G
Sbjct: 118 VIDTRELARENGFSSAVITLNKLYKDLVDESYKQNTDRELHGALLDAVMLAKVFIKLNSG 177

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
            ++I     T+      ++         L +      + ++EE+  H+  I TL K
Sbjct: 178 QNEIFLE--TSARSEASDDLGFSSQNIDLSKLNLKLIKASEEEIAAHNDYIATLSK 231


>gi|226952576|ref|ZP_03823040.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. ATCC 27244]
 gi|226836656|gb|EEH69039.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. ATCC 27244]
          Length = 452

 Score =  105 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P        ++ +HGIT
Sbjct: 225 RQLILDTETTGFYYQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVDVHGIT 282

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFL+DKP ++ I    + +         AHNA FD+ F++ E +R+    L     +  
Sbjct: 283 DEFLQDKPKYAEIADALFAYLKGAEII--AHNATFDMNFLDMEFKRVGLPLLSEVCEVTD 340

Query: 127 LSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                +  HP  +N L++L +RY I    R+ HGALLD+ +L+DVY+ M     Q++F  
Sbjct: 341 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTG--GQVSFDI 398

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    + K T   + +         R ++ EL+EH+  ++   + 
Sbjct: 399 DALSQHEQNQNKTTRQRVQID----LAVIRPSEHELNEHETWVKQFEEK 443


>gi|145579465|pdb|2GUI|A Chain A, Structure And Function Of Cyclized Versions Of The
           Proofread Exonuclease Subunit Of E. Coli Dna Polymerase
           Iii
          Length = 194

 Score =  105 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 74/182 (40%), Positives = 110/182 (60%), Gaps = 11/182 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QI 181
            +
Sbjct: 187 SM 188


>gi|257454857|ref|ZP_05620108.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
           epsilon subunit [Enhydrobacter aerosaccus SK60]
 gi|257447790|gb|EEV22782.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
           epsilon subunit [Enhydrobacter aerosaccus SK60]
          Length = 595

 Score =  105 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG +++  DRIIE+G VE+++   T     V++ P   +   E +++HGI 
Sbjct: 366 RQLILDTETTGFEAQNGDRIIEVGIVEMINRRFTGEKLHVYINPK-IEMGEEVIRVHGIH 424

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125
           + FL D P F  +    +DF        IAHNA FD+ F+ AE  R+    ++ +  + D
Sbjct: 425 NAFLNDMPVFEQVGEAIYDFLQGAE--LIAHNAGFDMSFLQAEFARLGLPDINQTVTVTD 482

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L+IA+R     RN L++L KR  +    R+ HGALLD+ +L++VY+ M  G   +    
Sbjct: 483 SLAIAKRMFAGQRNTLDALVKRLNVGKQDRTFHGALLDAEILAEVYLAMTGGQVALAIDD 542

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
           +         E +              F   ++ E   H + +  L  N
Sbjct: 543 EVGGGVGGATEHQRFSTTI------KRFLASSEAE-QAHLEWLNALKNN 584


>gi|325121399|gb|ADY80922.1| bifunctional protein dnaQ [Acinetobacter calcoaceticus PHEA-2]
          Length = 459

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P       E +  HGI+
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQKPVGDSENI--HGIS 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125
           D+FLKDKP ++ I    +D+         AHNA FD+ F++ E +R+    L     + D
Sbjct: 290 DDFLKDKPLYADIADTLFDYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +L+DVY+ M  G    +   
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGGQVSFDIDA 407

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
            +  +   +   ++   I             + EEL+ H+  ++   + 
Sbjct: 408 LSQSENSQQTTNRSRVQID------LPVIYPSDEELNTHETWVKEYEEK 450


>gi|24987377|pdb|1J53|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The
           Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 8.5
 gi|24987378|pdb|1J54|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The
           Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 5.8
 gi|119390109|pdb|2IDO|A Chain A, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading
           Complex
 gi|119390111|pdb|2IDO|C Chain C, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading
           Complex
          Length = 186

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 74/182 (40%), Positives = 110/182 (60%), Gaps = 11/182 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QI 181
            +
Sbjct: 184 SM 185


>gi|262372107|ref|ZP_06065386.1| ribonuclease HI [Acinetobacter junii SH205]
 gi|262312132|gb|EEY93217.1| ribonuclease HI [Acinetobacter junii SH205]
          Length = 448

 Score =  105 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   + NDRIIE+GA+E+++   T  +  +++ P        ++ +HGIT
Sbjct: 221 RQLILDTETTGFYYQDNDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVDVHGIT 278

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFL DKP ++ I    ++F         AHNA FD+ F++ E +R     L     +  
Sbjct: 279 DEFLADKPKYAEIADVLFEFLKGAEII--AHNATFDMNFLDMEFKRAGLPALSEVCEVTD 336

Query: 127 LSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                +  HP  +N L++L +RY I    R+ HGALLD+ +L+DVY+ M     Q++F  
Sbjct: 337 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTG--GQVSFDM 394

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                   ++ K T   + +           T +EL +H+  ++   + 
Sbjct: 395 DALSQTEQQQNKTTRQRVQID----LPIIYPTDDELQQHETWVKQFEEK 439


>gi|293608835|ref|ZP_06691138.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024]
 gi|292829408|gb|EFF87770.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024]
          Length = 459

 Score =  105 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P       E +  HGI+
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQKPVGDSENI--HGIS 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125
           D+FLKDKP ++ I    +D+         AHNA FD+ F++ E +R+    L     + D
Sbjct: 290 DDFLKDKPLYADIADTLFDYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +L+DVY+ M  G    +   
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGGQVSFDIDA 407

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
            +  +   +   ++   I             + EEL+ H+  ++   + 
Sbjct: 408 LSQSENSQQTTNRSRVQID------LPVIYPSDEELNIHETWVKEYEEK 450


>gi|189183653|ref|YP_001937438.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180424|dbj|BAG40204.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
           Ikeda]
          Length = 222

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 86/228 (37%), Positives = 123/228 (53%), Gaps = 12/228 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           RKIV D ET+GLD K   RIIEIGAVEL  D ++   TF  ++ P  R  S EA K+HG+
Sbjct: 3   RKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPE-RDISKEAYKVHGL 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL DKP F  I  EF  F +        HNA FD+ F+N+EL RI K  +  + +ID
Sbjct: 62  SRDFLSDKPKFREIVDEFLQFIDGAQLIM--HNANFDMQFLNSELFRIRKSAIPNTCVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR++ P  R +L++LC ++ I  S R  HGAL D+ LL+ VY +MM G   +    
Sbjct: 120 TLTLARKRFPKERVNLDALCYKFRIDTSDRHLHGALKDAKLLALVYGRMMRGMQVVLLDD 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
             +          T  N         +    T +E+ +H + +  + K
Sbjct: 180 TKHNKEIIISNCATNIN-------NTVVVEPTCDEIIQHQQLLSKIHK 220


>gi|257483794|ref|ZP_05637835.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 178

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 72/171 (42%), Positives = 96/171 (56%), Gaps = 4/171 (2%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +EFL  KP F+ +  EF++F           A +  F          +   D      I+
Sbjct: 68  NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSIL 127

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M 
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT 178


>gi|167010822|ref|ZP_02275753.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 230

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 80/239 (33%), Positives = 120/239 (50%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN +     AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYK-VEAGALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPLDPS 121
           +EFL DKP F     E  +F          HNA FDV FIN      +  +      + +
Sbjct: 62  NEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G + +
Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNL 179

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237
           +        +   +      N+   +         +  ++  H   +     L ++A W
Sbjct: 180 SLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISAHHSYLSNLLKLEEDAKW 230


>gi|332978349|gb|EGK15074.1| DNA polymerase III, epsilon subunit [Psychrobacter sp. 1501(2011)]
          Length = 577

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 14/229 (6%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTGLD+ K DR+IE+G +EL++   T     V++ P  R    E +++HGIT
Sbjct: 306 RQLIMDTETTGLDALKGDRVIEVGIIELVNRKFTGEKLHVYINPE-RGMDDEVIRVHGIT 364

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           + FL DKP F  +    ++F        IAHNA FD+ F++ E  R+      +   + D
Sbjct: 365 EAFLADKPKFKEVAKPLYEFMLGAE--LIAHNAPFDMSFLSMEFDRVGLSDFAEKVTVTD 422

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L +A++++P  +N L++L +R  +    R+ HGALLDS +L++VY+ M  G   +    
Sbjct: 423 SLVMAKQQYPGQKNTLDALVRRLNVGKMDRTFHGALLDSEILAEVYLAMTGGQVALAIDE 482

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
            T  +        +     +LK + P         LD H   +  L K 
Sbjct: 483 DTQSEGEGSHADFSHLASQILKANTP---------LDNHVSWVSKLLKK 522


>gi|289809670|ref|ZP_06540299.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 187

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/181 (40%), Positives = 108/181 (59%), Gaps = 11/181 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 Q 180
            
Sbjct: 187 S 187


>gi|187931822|ref|YP_001891807.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712731|gb|ACD31028.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 230

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 81/239 (33%), Positives = 120/239 (50%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  +    AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNY-EVEAGALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121
           +EFL DKP F     E  +F          HNA FDV FIN E       +      + +
Sbjct: 62  NEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWEFSLLKNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G + +
Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNL 179

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237
           +        +   +      N+   +         +  ++  H   +     L ++A W
Sbjct: 180 SLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISAHHSYLSNLLKLEEDAKW 230


>gi|89256347|ref|YP_513709.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314792|ref|YP_763515.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|254367683|ref|ZP_04983704.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|254369321|ref|ZP_04985333.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|89144178|emb|CAJ79442.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129691|gb|ABI82878.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253494|gb|EBA52588.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|157122271|gb|EDO66411.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 238

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 81/242 (33%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 6   KM-RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +M R++  D ETTG D K  +RIIE GAVE++D   T      +  PN +     AL +H
Sbjct: 8   RMSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYK-VEAGALAIH 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPL 118
           G+T+EFL DKP F     E  +F          HNA FDV FIN      +  +      
Sbjct: 67  GLTNEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELSLLKNNKYGTLEQ 124

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           + ++I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G 
Sbjct: 125 NVAKIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQ 184

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNA 235
           + ++        +   +      N+   +         +  ++  H   +     L ++A
Sbjct: 185 TNLSLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISAHHSYLSNLLKLEEDA 236

Query: 236 IW 237
            W
Sbjct: 237 KW 238


>gi|54114497|gb|AAV29882.1| NT02FT1179 [synthetic construct]
          Length = 230

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 79/232 (34%), Positives = 117/232 (50%), Gaps = 17/232 (7%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  +    AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNY-EVEAGALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPLDPS 121
           +EFL DKP F     E  +F          HNA FDV FIN      +  +      + +
Sbjct: 62  NEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G + +
Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNL 179

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           +        +   +      N+   +         +  ++  H   +  L K
Sbjct: 180 SLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISAHHSYLSNLLK 223


>gi|56707679|ref|YP_169575.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670150|ref|YP_666707.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134301975|ref|YP_001121944.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|224456748|ref|ZP_03665221.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370187|ref|ZP_04986193.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874491|ref|ZP_05247201.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604171|emb|CAG45181.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320483|emb|CAL08564.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134049752|gb|ABO46823.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151568431|gb|EDN34085.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840490|gb|EET18926.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158843|gb|ADA78234.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 230

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 80/239 (33%), Positives = 120/239 (50%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  +    AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNY-EVEAGALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPLDPS 121
           +EFL DKP F     E  +F          HNA FDV FIN      +  +      + +
Sbjct: 62  NEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G + +
Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNL 179

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237
           +        +   +      N+   +         +  ++  H   +     L ++A W
Sbjct: 180 SLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISAHHSYLSNLLKLEEDAKW 230


>gi|294649872|ref|ZP_06727272.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter haemolyticus ATCC 19194]
 gi|292824246|gb|EFF83049.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 452

 Score =  103 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P        ++ +HGIT
Sbjct: 225 RQLILDTETTGFYYQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVDVHGIT 282

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125
           DEFL+DKP ++ I    + +         AHNA FD+ F++ E +R+    L     + D
Sbjct: 283 DEFLQDKPKYAEIADALFAYLKGAEII--AHNATFDMNFLDMEFKRVGLPLLSEVCEVTD 340

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +L+DVY+ M     Q++F  
Sbjct: 341 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTG--GQVSFDI 398

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    + K T   + +           ++ EL+EH+  ++   + 
Sbjct: 399 DALSQHEQNQNKTTRQRVQID----LAVILPSEHELNEHETWVKQFEEK 443


>gi|169656602|ref|YP_001428489.2| DNA polymerase III, subunit epsilon [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290954177|ref|ZP_06558798.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312420|ref|ZP_06803198.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|164551670|gb|ABU61533.2| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 238

 Score =  103 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 80/235 (34%), Positives = 119/235 (50%), Gaps = 18/235 (7%)

Query: 6   KM-RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +M R++  D ETTG D K  +RIIE GAVE++D   T      +  PN +     AL +H
Sbjct: 8   RMSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYK-VEAGALAIH 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPL 118
           G+T+EFL DKP F     E  +F          HNA FDV FIN      +  +      
Sbjct: 67  GLTNEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELSLLKNNKYGTLEQ 124

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           + ++I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G 
Sbjct: 125 NVAKIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQ 184

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           + ++        +   +      N+   +         +  ++  H   +  L K
Sbjct: 185 TNLSLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISAHHSYLSNLLK 231


>gi|320332653|ref|YP_004169364.1| DNA polymerase III subunit epsilon [Deinococcus maricopensis DSM
           21211]
 gi|319753942|gb|ADV65699.1| DNA polymerase III, epsilon subunit [Deinococcus maricopensis DSM
           21211]
          Length = 174

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 4/175 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M  +VFD+ETTGL  + D I+EIGA+ + +     + TF   + P  R       ++HGI
Sbjct: 1   MEYVVFDLETTGLSPERDAIVEIGAIRIRNGEVLEDDTFHTLVNPE-RDIPWYVSRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +   P  +     F           +AHNA FD GFI A   R   +      I  
Sbjct: 60  RNAHVASAPRITEALPAFLQ--YAGTTPVVAHNAAFDTGFIRAAAARQGLEWRPQREICT 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                R       + L++L +R G+    R  H A  D+ L +  +  ++    +
Sbjct: 118 LQLSRRAFPREKSHKLDALAQRLGLLQEARGLHSAHADARLTAHAFAHLLRHLGE 172


>gi|332184121|gb|AEE26375.1| DNA polymerase III epsilon subunit [Francisella cf. novicida 3523]
          Length = 230

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 86/239 (35%), Positives = 123/239 (51%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T  T   +  PN  +    AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRVTGNTLHFYCNPNY-EVEAGALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPLDPS 121
           +EFL DKP F     E  DF          HNA FDV FIN      +  +      + +
Sbjct: 62  NEFLADKPLFEDKVDEMIDFLKGAEVI--IHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M     Q 
Sbjct: 120 KIVDSLELARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTG--GQT 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237
           N   +T +          +  ++L K D  +       ++  H   +     L ++A W
Sbjct: 178 NLSLQTAKTISKNSIDIDINKLNLRKADDSI------SDISVHHNYLSNLLKLEEDAKW 230


>gi|254374374|ref|ZP_04989856.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548]
 gi|151572094|gb|EDN37748.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548]
          Length = 238

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 6   KM-RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           KM R++  D ETTG D K  +RIIE GAVE++D   T  T   +  PN  +    AL +H
Sbjct: 8   KMSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNTLHFYCNPNY-EVEAGALAIH 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPL 118
           G+T+EFL DKP F     E  +F          HNA FDV FIN         +      
Sbjct: 67  GLTNEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELGLLRNNKYGTLEQ 124

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           + +RI+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G 
Sbjct: 125 NVARIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQ 184

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNA 235
           + ++        +   +      N+   +         +  ++  H   +     L ++A
Sbjct: 185 TNLSLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISVHHSYLSNLLKLEEDA 236

Query: 236 IW 237
            W
Sbjct: 237 KW 238


>gi|148284671|ref|YP_001248761.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
           Boryong]
 gi|146740110|emb|CAM80283.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
           Boryong]
          Length = 222

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 86/228 (37%), Positives = 123/228 (53%), Gaps = 12/228 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           RKIV D ET+GLD K   RIIEIGAVEL  D ++   TF  ++ P  R  S EA K+HG+
Sbjct: 3   RKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPE-RDISKEAYKVHGL 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL DKP F  I  EF  F +        HNA FD+ F+N+EL RI K  +  + +ID
Sbjct: 62  SRDFLSDKPKFREIVDEFLQFIDRAQLIM--HNANFDMQFLNSELFRIRKSAIPNTCVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR++ P  R +L++LC ++ I  S R  HGAL D+ LL+ VY +MM G   +    
Sbjct: 120 TLTLARKRFPKERVNLDALCYKFRIDTSDRHLHGALKDAKLLALVYGRMMHGMQVVLLDD 179

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
             +          T  N         +    T +E+ +H + +  + K
Sbjct: 180 TKHNKEIIISNCATNIN-------NTVVVEPTCDEIIQHQQLLSKIHK 220


>gi|62261930|gb|AAX78030.1| unknown protein [synthetic construct]
          Length = 265

 Score =  102 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 80/239 (33%), Positives = 120/239 (50%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  +    AL +HG+T
Sbjct: 29  RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNY-EVEAGALAIHGLT 87

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPLDPS 121
           +EFL DKP F     E  +F          HNA FDV FIN      +  +      + +
Sbjct: 88  NEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELSLLKNNKYGTLEQNVA 145

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G + +
Sbjct: 146 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNL 205

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237
           +        +   +      N+   +         +  ++  H   +     L ++A W
Sbjct: 206 SLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISAHHSYLSNLLKLEEDAKW 256


>gi|254372921|ref|ZP_04988410.1| hypothetical protein FTCG_00492 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570648|gb|EDN36302.1| hypothetical protein FTCG_00492 [Francisella novicida GA99-3549]
 gi|332678259|gb|AEE87388.1| DNA polymerase III epsilon subunit [Francisella cf. novicida Fx1]
          Length = 230

 Score =  102 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 82/239 (34%), Positives = 120/239 (50%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T  T   +  PN  +    AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNTLHFYCNPNY-EVEAGALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPLDPS 121
           +EFL DKP F     E  +F          HNA FDV FIN         +      + +
Sbjct: 62  NEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELGLLRNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           RI+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G + +
Sbjct: 120 RIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNL 179

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237
           +        +   +      N+   +         +  ++  H   +     L ++A W
Sbjct: 180 SLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISVHHSYLSNLLKLEEDAKW 230


>gi|145641463|ref|ZP_01797041.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
 gi|145273754|gb|EDK13622.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.4-21]
          Length = 205

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 71/188 (37%), Positives = 100/188 (53%), Gaps = 8/188 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N                        +N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ M 
Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177

Query: 176 VGGSQINF 183
            G    + 
Sbjct: 178 GGKQIYSM 185


>gi|118497560|ref|YP_898610.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           novicida U112]
 gi|195536256|ref|ZP_03079263.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|118423466|gb|ABK89856.1| DNA polymerase III, epsilon subunit [Francisella novicida U112]
 gi|194372733|gb|EDX27444.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           novicida FTE]
          Length = 230

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 80/239 (33%), Positives = 120/239 (50%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  +    AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNY-EVEAGALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPLDPS 121
           +EFL DKP F     E  +F          HNA FDV FIN      +  +      + +
Sbjct: 62  NEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G + +
Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNL 179

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237
           +        +   +      N+   +         +  ++  H   +     L ++A W
Sbjct: 180 SLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISVHHSYLSNLLKLEEDAKW 230


>gi|323143749|ref|ZP_08078417.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT
           12066]
 gi|322416462|gb|EFY07128.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT
           12066]
          Length = 309

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 16/228 (7%)

Query: 8   RKIVFDIETTGLD----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           R++  D ETTG      +   RIIE+G VE+++   T R  Q F+ P+ R    EA ++H
Sbjct: 5   RQVALDTETTGKSDDGTTGTHRIIEVGCVEIINRRLTGRQLQFFVNPD-RHIDEEATEVH 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITDE L DKP F+ + +E  DF                      +L ++N+   D  +I
Sbjct: 64  GITDEMLADKPHFADVANELIDFIRGSELLIHNAKFDSAFLDKEWDLLKLNEHTKDMCKI 123

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DT+ +AR+ +P+++ +L++LC  Y I  S R+ HGALLD+ LL++VY+ M  G S  +F
Sbjct: 124 VDTVELARKINPNNQANLDNLCSIYDIDNSRRTVHGALLDAQLLAEVYLAMTGGQSSFDF 183

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           G  +        E           R K +   +   E D H   +  +
Sbjct: 184 GEDSVNALSRHWE-----------RPKDIKLPLMHVETDRHAVHVAQM 220


>gi|71065393|ref|YP_264120.1| bifunctional ribonuclease HI/DNA polymerase III, epsilon subunit
           [Psychrobacter arcticus 273-4]
 gi|71038378|gb|AAZ18686.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
           epsilon subunit [Psychrobacter arcticus 273-4]
          Length = 527

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 106/190 (55%), Gaps = 5/190 (2%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTGLD  K DRIIE+G VE++    T     V++ P  R    E +++HGI+
Sbjct: 302 RQLIMDTETTGLDPLKGDRIIEVGIVEMIGRKFTGEKLHVYINPQ-RGMDEEVIRIHGIS 360

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIID 125
           + FL DKP+F  +    +DF +       AHNA FD+ F+N E  +    D  +  R+ D
Sbjct: 361 EAFLTDKPTFDQVAQSLYDFMDGAEII--AHNASFDMNFLNMEFAKVGMHDFAERVRVTD 418

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L +A++++P  +N L++L +R  +    R+ HGALLDS +L++VY+ M  G   +    
Sbjct: 419 SLVMAKQQYPGQKNTLDALVRRLDVGKQDRTFHGALLDSEILAEVYLTMTGGQVTLGIED 478

Query: 186 KTNEDRFFKE 195
            T  D     
Sbjct: 479 DTQADGGHTA 488


>gi|208779358|ref|ZP_03246704.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG]
 gi|208745158|gb|EDZ91456.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG]
          Length = 238

 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 81/242 (33%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 6   KM-RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +M R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  +    AL +H
Sbjct: 8   RMSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNY-EVEAGALAIH 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPL 118
           G+T+EFL DKP F     E  +F          HNA FDV FIN      +  +      
Sbjct: 67  GLTNEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELSLLKNNKYGTLEQ 124

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           + ++I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G 
Sbjct: 125 NVAKIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRAFHGALLDSELLADVYLAMTGGQ 184

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNA 235
           + ++        +   +      N+   +         +  ++  H   +     L ++A
Sbjct: 185 TNLSLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISVHHSYLSNLLKLEEDA 236

Query: 236 IW 237
            W
Sbjct: 237 KW 238


>gi|296113099|ref|YP_003627037.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
 gi|295920793|gb|ADG61144.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
 gi|326560092|gb|EGE10482.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 46P47B1]
 gi|326560475|gb|EGE10857.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 7169]
 gi|326561678|gb|EGE12015.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 103P14B1]
 gi|326564194|gb|EGE14430.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 12P80B1]
 gi|326565793|gb|EGE15955.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC1]
 gi|326570446|gb|EGE20486.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC8]
 gi|326571129|gb|EGE21153.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC7]
 gi|326573423|gb|EGE23391.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 101P30B1]
 gi|326575681|gb|EGE25604.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis CO72]
 gi|326577147|gb|EGE27041.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis O35E]
          Length = 432

 Score = 99.6 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 116/233 (49%), Gaps = 19/233 (8%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG + +  DRI+E+G VEL+    T     V++ P  +      +++HGI+
Sbjct: 212 RQLIMDTETTGFNEAGGDRIVEVGIVELVGRKFTGNILHVYINPE-KHMDDAVIQVHGIS 270

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           + F+ DKP F+ +  + ++F         AHNA FD+ F+N E  R       +  ++ D
Sbjct: 271 NAFVADKPKFAEVAQQIYEFMAGSEVI--AHNAAFDMKFLNMEFNRAGLSNFANSVKVTD 328

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A++ +P  +N L++L KR G+    R+ HGALLDS +L++VY+ M  G   +    
Sbjct: 329 TLALAKQMYPGQKNSLDALVKRLGVGQKDRTFHGALLDSEILAEVYLAMTGGQIAMAIDD 388

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
                   +       ++S           +++ +++           +A+W 
Sbjct: 389 DNTGGSNTRSTGSAFYDLSQYADS----LALSESDIEA----------DALWR 427


>gi|93005683|ref|YP_580120.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis
           K5]
 gi|92393361|gb|ABE74636.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis
           K5]
          Length = 532

 Score = 99.6 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/190 (33%), Positives = 105/190 (55%), Gaps = 5/190 (2%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTGLD  K DR+IE+G VE++    T     V++ P  R    E +++HGI+
Sbjct: 307 RQLIMDTETTGLDPQKGDRVIEVGIVEMIGRKFTGEKLHVYINPQ-RGMDEEVIRIHGIS 365

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIID 125
           + FL DKP+F  +    +DF +       AHNA FD+ F+N E  +    D  +  ++ D
Sbjct: 366 EAFLTDKPTFDQVAQSLYDFMDGAEII--AHNASFDMNFLNMEFAKVGMHDFAERVKVTD 423

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L +A++++P  +N L++L +R  +    R+ HGALLDS +L++VY+ M  G   +    
Sbjct: 424 SLVMAKQQYPGQKNTLDALVRRLDVGKQDRTFHGALLDSEILAEVYLAMTGGQVTLGIED 483

Query: 186 KTNEDRFFKE 195
               D     
Sbjct: 484 DAQADGGHTA 493


>gi|241668417|ref|ZP_04755995.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876950|ref|ZP_05249660.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842971|gb|EET21385.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 230

 Score = 99.6 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 86/239 (35%), Positives = 123/239 (51%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  +    AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRKVTGNNLHFYCNPNY-EVEAGALAVHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPLDPS 121
           +EFL DKPSF     +  DF          HNA FDV FIN      +  +        +
Sbjct: 62  NEFLADKPSFEENVDQMIDFLRGAEII--IHNAAFDVPFINWELGLLKNNKYGTLEQHVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M     Q 
Sbjct: 120 KIVDSLELARKKHPLQKNNLDALCKRYHIRNDHRTFHGALLDSELLADVYLAMTG--GQT 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAIW 237
           N   +T ++            + L   ++ +        + EHDK +     L ++A W
Sbjct: 178 NLVLQTTKNASKDTIDIDFDKLKLRSANETIIN------ISEHDKYLCNILKLEESAKW 230


>gi|167627857|ref|YP_001678357.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597858|gb|ABZ87856.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 230

 Score = 99.6 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 85/239 (35%), Positives = 122/239 (51%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  +    AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRKVTGNNLHFYCNPNY-EVEAGALAVHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPLDPS 121
           +EFL DKP F     +  DF          HNA FDV FIN      +  +        +
Sbjct: 62  NEFLADKPLFEENVDQMIDFLRGAEII--IHNAAFDVPFINWELGLLKNNKYGTLEQHVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M     Q 
Sbjct: 120 KIVDSLELARKKHPLQKNNLDALCKRYHIRNDHRTFHGALLDSELLADVYLAMTG--GQT 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAIW 237
           N   +T ++            + L   ++ +        + EHDK +     L ++A W
Sbjct: 178 NLVLQTTKNASKDTIDIDFDKLKLRSANETIIN------ISEHDKYLCNILKLEESAKW 230


>gi|303256972|ref|ZP_07342986.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
           1_1_47]
 gi|302860463|gb|EFL83540.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
           1_1_47]
          Length = 260

 Score = 98.9 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 17/234 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTG+ +K  DRIIEIG VEL ++  T++ F  ++ P  R+   E +++H I
Sbjct: 1   MREICLDTETTGMAAKEGDRIIEIGCVELGEHGLTDKNFHEYIDPE-RQMEAEVIRVHKI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA--HNAKFDVGFINAELQRINKDPLDPSRI 123
           T+EFL  KP F+ I  +F +F             +  F    +    +   ++      I
Sbjct: 60  TNEFLVGKPKFADIADKFIEFVQGARLIIHNAQFDIGFLNEELRKLGKPSMEEICGKDNI 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKR--YGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ID++ +A+   P   N L++LCKR     T   +  HGALLD+ LL  VY+ +      +
Sbjct: 120 IDSMELAKAAFPQMHNSLDALCKRLEIDTTRRVKEGHGALLDAELLGQVYLVLKQQQGIL 179

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
                             +P             R T+E+L E+++ ++ + K A
Sbjct: 180 EIDAAPVSADVHDISDVELP-----------VIRATEEDLSENERVLEMVRKAA 222


>gi|330719972|gb|EGG98425.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC2047]
          Length = 212

 Score = 98.9 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 76/212 (35%), Positives = 115/212 (54%), Gaps = 12/212 (5%)

Query: 34  LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE 93
           ++D   T R +  ++ P  R     A ++HGIT +FL DKP F+ I +EF  F       
Sbjct: 3   VIDRKLTGRHYHQYINPE-RDIDDGAAEVHGITSDFLADKPVFADIANEFLAFIKGAE-- 59

Query: 94  WIAHNAKFDVGFINAELQRINKDPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150
            + HNA FDVGFI+ E + +N+          IIDT+ +AR+KHP  +N+L++LCKRYG+
Sbjct: 60  LVIHNAPFDVGFIDHEFRLLNQGHPKTSEICDIIDTIVMARKKHPGQKNNLDALCKRYGV 119

Query: 151 TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
             S R  HGALLD+ +L+DVY+ M  G + +  G    +++   E  + V N    +R  
Sbjct: 120 DNSARDLHGALLDAEILADVYLLMTGGQTALMLG---ADEQAGGEAGQMVINRVSAERRP 176

Query: 211 PLFTRITKEELDEHDKTIQTLGK---NAIWDR 239
               R + EEL  H   +Q L K   + +W +
Sbjct: 177 LKVIRASDEELAAHHDNLQQLEKVSGDCLWLK 208


>gi|225024402|ref|ZP_03713594.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC
           23834]
 gi|224942783|gb|EEG23992.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC
           23834]
          Length = 240

 Score = 98.5 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 106/240 (44%), Gaps = 8/240 (3%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             +R+I+ D ETTG    ++DR+IE   +E++D   T     +++ P  R    EA K+H
Sbjct: 2   KHLRQIILDTETTGFYYDRDDRLIEFAGLEMIDRRLTGNYLHLYVHPE-RDIPEEAAKVH 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT + L+ KP F+ I  +  DF                          +       + +
Sbjct: 61  GITLDQLEGKPKFAEIGQQIADFIAGTELVIHNAPFDVGFLNAEFRRAGLPSVEELTANV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR  +P  +N L++LC R  +  S R  HGAL+D  LLS+VY+ M    SQ + 
Sbjct: 121 VDTLVMARAMYPGQKNSLDALCTRLEVDRSKRVFHGALIDCELLSEVYLGMTR--SQFSL 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
             +  E+   + +   V      +  +        EE   H+  +  L K     +IW +
Sbjct: 179 ADQFAEEESAEADAPAVVIAPTERPAQLKVLAANAEENAAHEAYLDELDKKVEGGSIWRK 238


>gi|253795564|ref|YP_003038660.1| putative DNA polymerase III, epsilon subunit [Candidatus Hodgkinia
           cicadicola Dsem]
 gi|253739872|gb|ACT34207.1| putative DNA polymerase III, epsilon subunit [Candidatus Hodgkinia
           cicadicola Dsem]
          Length = 182

 Score = 96.5 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 101/179 (56%), Gaps = 3/179 (1%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   K+R+I+ D ETTGL  K DR+IE+ A++L D  +T  T+  +  P   K S  A  
Sbjct: 1   MSCFKIREIILDTETTGLSVKTDRLIELAAIKLEDGRRTPHTYHSYFNPQPVKVSRSAFN 60

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI++EFL DKP+F S   EF +F        IAHNA+FD+  IN ELQ    DP+D  
Sbjct: 61  VHGISNEFLSDKPAFKSCAREFLEFVAGHE--LIAHNARFDLQIINRELQMAGADPIDAG 118

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              D+LSIA++  P+  N + +LCKR+ +       H A  D  LL+ VY  ++    +
Sbjct: 119 CWRDSLSIAKQLFPNRSNSMAALCKRFNLE-CETETHSAARDCELLARVYELILDEKRR 176


>gi|307069564|ref|YP_003878041.1| putative DNA polymerase III subunit epsilon [Candidatus Zinderia
           insecticola CARI]
 gi|306482824|gb|ADM89695.1| putative DNA polymerase III, epsilon subunit [Candidatus Zinderia
           insecticola CARI]
          Length = 222

 Score = 96.5 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 9/226 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           ++I+ DIETTGL+ K  DRIIEI  +++L+   TN+ F  ++ PN RK++ +ALK+HGI+
Sbjct: 3   KEIILDIETTGLNVKKGDRIIEIACIKILNRKITNKKFHEYINPN-RKSNKDALKIHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+FLK+KP F  I  +  +F           +          ++ +  K       I+D+
Sbjct: 62  DKFLKNKPFFKDIIDKLINFIKNYTIIIHNSSFDISFLNKEFKILKYKKFKYYVKNIVDS 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L IAR+K P+ +NDLNSLCKR+ I+I  R  H ALLD  LLS +Y+ ++     I +   
Sbjct: 122 LKIARKKFPNKKNDLNSLCKRFKISIKKRKLHNALLDCILLSKIYLILIRKQKNIFY--- 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
                   +EKK          +K +  +I K+E   H   I+ + 
Sbjct: 179 ----NIINKEKKINNKNKKKLVNKMINIKINKDENKIHKDIIKNIN 220


>gi|256112395|ref|ZP_05453316.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3
          str. Ether]
 gi|265993832|ref|ZP_06106389.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3
          str. Ether]
 gi|262764813|gb|EEZ10734.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3
          str. Ether]
          Length = 80

 Score = 94.2 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/80 (55%), Positives = 57/80 (71%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +HGI+
Sbjct: 1  MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60

Query: 67 DEFLKDKPSFSSIFSEFWDF 86
          +E L DKP F+ I  EF +F
Sbjct: 61 NEQLLDKPVFAEILDEFLEF 80


>gi|262277819|ref|ZP_06055612.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114]
 gi|262224922|gb|EEY75381.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114]
          Length = 223

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 87/233 (37%), Positives = 137/233 (58%), Gaps = 11/233 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M++++ D ETTGL S ND+IIEI  +E+ D+  T   F VFL P   + S  A   HGI+
Sbjct: 1   MKEVLLDTETTGLSSVNDKIIEIACIEIEDHIPTGEKFHVFLNPE-MEISQGAYDTHGIS 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            EFLK+KP F+ +  +F  F +    + + HNA+FD+ F+N EL+ + +  +    I+DT
Sbjct: 60  KEFLKNKPKFNDVAKDFTKFIDG--KKLVIHNAEFDLAFLNKELKEVGEKQISKDNIVDT 117

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L+IAR K P ++N L++LCKR+ I  S R KH ALLD  LL+ VYI++     +  F F 
Sbjct: 118 LNIAREKFPGAQNSLDALCKRFKIDNSRRQKHSALLDCELLAKVYIELFEK-KEPTFEFD 176

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWD 238
            N       + +++ N+  +K  K +  +IT EE   H + + + L K+++ +
Sbjct: 177 LN------AQDESIKNVKNIKDRKQIIAQITNEEKRLHKEFLQKELPKSSMLN 223


>gi|238022806|ref|ZP_04603232.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147]
 gi|237866009|gb|EEP67145.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147]
          Length = 244

 Score = 93.1 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 120/239 (50%), Gaps = 12/239 (5%)

Query: 8   RKIVFDIETTGL------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+I+ D ETTG       +   DR+IE   +E+++   T  T  +++ P  R    EA  
Sbjct: 7   RQIILDTETTGFYHSAAENP--DRLIEFAGLEMVNRQLTENTLHLYIHPQ-RDIPAEAAA 63

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-P 120
           +HGIT + L+ KP F+ +  + +DF        I HNAKFD+GF+NAE  R+   P+D  
Sbjct: 64  IHGITLDQLEGKPVFAQVAQQIFDFLKGAE--LIIHNAKFDIGFLNAEFARVGLPPIDSV 121

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +IDTL +AR K+P  +N+L++LC R G+  S R  HGAL+D  LL  VY+ M      
Sbjct: 122 CSVIDTLEMARNKYPGQKNNLDALCNRLGVDRSRRVLHGALIDCELLGGVYLAMTRNQFS 181

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
           +    +   +      + T     + + D  +      +E   H+  +  LG   ++ +
Sbjct: 182 LTDVLEDEAETAAPAAQTTAAPAPVFRADSLIVLHADADEAAAHEAYLDGLGSECVYRQ 240


>gi|149201054|ref|ZP_01878029.1| putative exonuclease [Roseovarius sp. TM1035]
 gi|149145387|gb|EDM33413.1| putative exonuclease [Roseovarius sp. TM1035]
          Length = 688

 Score = 92.7 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 92/173 (53%), Gaps = 6/173 (3%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
            +VFD ETTGL  +  D I++I  + +++       +F + + P GR   P + ++H I+
Sbjct: 494 FVVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLVNP-GRPIPPASTRVHHIS 552

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ ++D P        F DF     A  +AHNA FD+ F+  + + I +   +P      
Sbjct: 553 DDMVQDAPDIIEAGRRFHDFCQG--AVLVAHNAPFDLAFLRLKEKVIGRRFDNPVLCTVL 610

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +S A     S ++ L++LC+R+GITI   ++H A+ D+   ++V+++M+    
Sbjct: 611 MS-AGLFDHSGQHTLDALCERFGITIPPEARHTAMGDTVATAEVFVRMLGLLQ 662


>gi|21702589|gb|AAM75986.1|AF481102_22 DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps]
          Length = 203

 Score = 92.7 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 1/165 (0%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D ETTGL  +  R+ E+G VE+     T   F  ++ P  ++ +  A  +H + D
Sbjct: 4   RYVVLDTETTGLSPRYHRLAEVGCVEIACGRITGNFFHSYINP-RQRMTRGAQAVHRLRD 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           EFL ++P+F +I      F           +   +                    +IDT+
Sbjct: 63  EFLAEQPTFRAIAQRLLFFLCRSTLVGHNLSFDLNFLDAGLATAGFMPAARYCHGVIDTM 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               ++    R  L++ C R G+    R++HGAL D+ LL++ ++
Sbjct: 123 LHLAQRGRRRRFSLDACCDRLGVRRGDRARHGALEDAVLLAEAFV 167


>gi|282882108|ref|ZP_06290749.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus lacrimalis 315-B]
 gi|281298138|gb|EFA90593.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus lacrimalis 315-B]
          Length = 1415

 Score = 92.3 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 118/237 (49%), Gaps = 12/237 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL    D+I EIGAV+++D   T R F   + P       +  +L  IT+ 
Sbjct: 401 YVVFDIETTGLSPIRDKITEIGAVKIVDGIITER-FSQLINPQ-MLIPEKVQELTRITNA 458

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++++P+   +  +F+DF  +  +  +AHNAKFD  FI    +  + D ++P     + +
Sbjct: 459 LVENEPTIEEVAPKFYDFIKD--SVLVAHNAKFDTAFIRRVFKENDLDFINPILDTLSFA 516

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG---SQINFGF 185
            A  K  + + +L +LCK++G++      H A+ D+   + ++IK++        I+F  
Sbjct: 517 RATVKD-TKKFNLATLCKKFGVS--LVGAHRAVNDAEATAHLFIKLINKIFDPKHIDFNK 573

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWDRY 240
             +     + E     ++S+L +++     + K   D H K    + K   ++ ++Y
Sbjct: 574 LNSLKSQIEPEILFESSLSILTKNEEGLKNLYKLVSDSHMKYFNRVAKVPRSLINKY 630


>gi|167759386|ref|ZP_02431513.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704]
 gi|167662943|gb|EDS07073.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704]
          Length = 1499

 Score = 91.5 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 10/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG     D+IIEIGAV++ +   T R F  F+ P          +L  ITD+
Sbjct: 462 YVVFDLETTGFSPIKDKIIEIGAVKVENGKITER-FSTFVNPK-IPIPFRITQLTSITDQ 519

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   ++  +F +F  +  A  +AHNA FDVGFI    +   +D +     +DT++
Sbjct: 520 MVMDAPDIDTVLPQFLEFIGD--AVLVAHNASFDVGFIEQNCR--YQDIVPNFTSVDTVA 575

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +AR   P+      ++     + IS  + H A+ D+   +++++K +    + N     +
Sbjct: 576 MARILLPTLSKFKLNVVANA-LHISLENHHRAVDDAGATAEIFVKFVEMLKERNIN---D 631

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
             R  +        I  L     +   + +
Sbjct: 632 LARLNQFGSNNADAIKKLPTYHVIILALNE 661


>gi|299144044|ref|ZP_07037124.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518529|gb|EFI42268.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 1421

 Score = 91.1 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 12/237 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG   + D I EIGAV+++D    +R F   + P   K     ++L GI+++
Sbjct: 406 FVVFDIETTGFSPQVDEITEIGAVKIVDGVIVDR-FSQLVNP-MIKIPDRVVELTGISND 463

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           F+KD+P+   +  +F DF   +N+  +AHNA FD+ FI    + + K  L  +  +    
Sbjct: 464 FVKDEPTIDKVIVDFNDFC--KNSVLVAHNAGFDISFIR---RDMLKYNLSFNFTVLDTL 518

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
              R         N       + +S  + H A+ D+   ++V+IKM+    ++      +
Sbjct: 519 SLARAIIKDIKRFNLTALSKKLGVSLVNAHRAVNDAEATAEVFIKMLDILKKLGIKTFCD 578

Query: 189 EDRFFKEEKKTV---PNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWDRY 240
            ++  K+   ++    +ISLL ++      + K   + H   +  + K   ++ ++Y
Sbjct: 579 INKLKKDIDSSILFESSISLLVKNNVGLKNLYKLVSESHMNYVNRVAKVPRSLINKY 635


>gi|260434020|ref|ZP_05787991.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417848|gb|EEX11107.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 470

 Score = 91.1 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 5/176 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGL    D I++IGAV ++         F   + P G    P + ++H ++D
Sbjct: 278 FVVFDTETTGLLPHKDEIVQIGAVRVVKGRIVEGEQFDTLVNP-GIPIPPASTRVHKVSD 336

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++D P   +   +F      ++A  +AHNA FD+ F+    +R+  +   P      L
Sbjct: 337 RMVQDAPDIITAGRQFHH--FARDAVIVAHNAPFDMAFLRRHAKRMEVEWDHPILDTVLL 394

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           S A     S  + L++LC R GI I    +H AL D+   ++  ++M+        
Sbjct: 395 S-AVLFGASETHTLDALCDRLGIEIPETLRHTALGDAVATAEALVRMLPMLQARGM 449


>gi|220927905|ref|YP_002504814.1| DNA polymerase III PolC [Clostridium cellulolyticum H10]
 gi|219998233|gb|ACL74834.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10]
          Length = 1433

 Score = 91.1 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 106/223 (47%), Gaps = 10/223 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL+ + DRI EIGAV++ +    +R F  F+ P G       +KL GIT++
Sbjct: 422 FVVFDIETTGLNPQQDRITEIGAVKVRNGQIVDR-FSAFVNP-GVSIPSFIVKLTGITND 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    + +EF +F     +  +AHNA FDVGFI    + I +     +  +DTL 
Sbjct: 480 MVKDAPPIEQVLNEFMEFIQG--SVLVAHNANFDVGFIKHNAKIIGEK--VKNPYLDTLE 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           + R+  P       ++  ++ + I   + H A+ DS   + ++I  +    +       +
Sbjct: 536 LCRKMFPELGRYKLNIVAKH-LKIELENHHRAVDDSMATAKIFIHCLNELKEKGCKNIKD 594

Query: 189 EDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
               F  E   K +  +  +L ++K     + K     H K +
Sbjct: 595 IQNAFDGEVNLKASSYHAIILVKNKVGLKNLYKIVSQSHLKYL 637


>gi|300813717|ref|ZP_07094037.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512174|gb|EFK39354.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 1415

 Score = 91.1 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 117/237 (49%), Gaps = 12/237 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL    D+I EIGAV+++D   T R F   + P       +  +L  IT+ 
Sbjct: 401 YVVFDIETTGLSPIRDKITEIGAVKIVDGIITER-FSQLINPQ-MLIPEKVQELTRITNA 458

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++++P+   +  +F+DF  +  +  +AHNAKFD  FI    +  + D ++P     + +
Sbjct: 459 LVENEPTIEEVAPKFYDFIKD--SVLVAHNAKFDTAFIRRVFKENDLDFINPILDTLSFA 516

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG---SQINFGF 185
            A  K  + + +L +LCK++G++      H A+ D+   + ++IK++        I+F  
Sbjct: 517 RATVKD-TKKFNLATLCKKFGVS--LVGAHRAVNDAEATAHLFIKLINKIFDPKHIDFNK 573

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWDRY 240
             +     + E     ++S+L +++     + K   D H      + K   ++ ++Y
Sbjct: 574 LNSLKSQIEPEILFESSLSILTKNEEGLKNLYKLVSDSHMNYFNRVAKVPRSLINKY 630


>gi|213582095|ref|ZP_03363921.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 172

 Score = 90.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 69/166 (41%), Positives = 98/166 (59%), Gaps = 11/166 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ 
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQ 172


>gi|21672521|ref|NP_660588.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|21623143|gb|AAM67799.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 234

 Score = 90.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 93/241 (38%), Positives = 130/241 (53%), Gaps = 15/241 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           +  N  R IV D ETTG++S        RIIEIGA+E+++   T + F  ++ PN R   
Sbjct: 1   MMNNTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN-RLIE 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---I 113
            +A K+HGITD+FL DKPSF  I  +F+++        I HNA FDVGFIN E       
Sbjct: 60  SDASKIHGITDDFLSDKPSFKDIAKDFFNYIKNSE--LIIHNASFDVGFINQEFSMLTKK 117

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +D  +   IIDTL IAR+  P  +N L++LC RY I  SHR  HGA+LD+ LL  +Y+ 
Sbjct: 118 IQDISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGKLYLL 177

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           M  G   I F      +R F+  KK++      K       +  K EL  H++ ++ L +
Sbjct: 178 MTSGQESIIFNKNIQNERNFRYIKKSITK----KHRFLKIIKANKTELKLHNEYLKFLKE 233

Query: 234 N 234
            
Sbjct: 234 K 234


>gi|226227286|ref|YP_002761392.1| DNA polymerase III epsilon subunit [Gemmatimonas aurantiaca T-27]
 gi|226090477|dbj|BAH38922.1| DNA polymerase III epsilon subunit [Gemmatimonas aurantiaca T-27]
          Length = 214

 Score = 90.0 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 7/215 (3%)

Query: 9   KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG  +   DRI EI  V++         +   + P  R   P    L  IT 
Sbjct: 6   FAVVDVETTGTRAAGGDRITEIAIVQVQGGQ-VGEVYSQLVNPE-RPIPPYITSLTHITW 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++D+P+F  I S   D      + ++AHNA FD  F++ E++R +   L   R+    
Sbjct: 64  DMVRDQPTFREITSNVLDRLRG--SIFVAHNAPFDWRFVSEEVRRGSGQELSGPRLCTVR 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                    SR  L+ + + +GI I   ++H A  D+   +    +M+   S+      T
Sbjct: 122 FARAALPQLSRRSLDHVTRYFGIEI--AARHRAAGDALATAHALCRMLNIASEHGVESWT 179

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
               F      T P  +  +R +     +TK+++ 
Sbjct: 180 ALQAFVDGPVGTRPRTASDRRRRAFPLPVTKDDIA 214


>gi|317495743|ref|ZP_07954108.1| DNA polymerase III [Gemella moribillum M424]
 gi|316914196|gb|EFV35677.1| DNA polymerase III [Gemella moribillum M424]
          Length = 1446

 Score = 89.6 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 98/186 (52%), Gaps = 5/186 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ DR+IEI AV++ + ++   +F+ ++ P  R  S    +L  ITD+
Sbjct: 426 YVVFDVETTGLSAERDRLIEIAAVKVKNGAEI-DSFESYINPE-RPISELITRLTSITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P    + ++F+++  +++   +AHNAKFD+GFI+   +R+  +  + + I     
Sbjct: 484 DVRDAPVEKEVMTDFYNWL-DEDDILVAHNAKFDLGFIDKSFERLGLENKNNASIDTLFI 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  + R+ L++L K Y   +     H A+ D+   ++++IKM+     +       
Sbjct: 543 SRAENKEAKRHGLSNLAKMY--KVRLVQHHRAIYDTKATAEIFIKMLNQLYALGIERHNE 600

Query: 189 EDRFFK 194
            D    
Sbjct: 601 IDNKID 606


>gi|329767541|ref|ZP_08259064.1| DNA polymerase III [Gemella haemolysans M341]
 gi|328835875|gb|EGF85597.1| DNA polymerase III [Gemella haemolysans M341]
          Length = 1449

 Score = 89.6 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 102/197 (51%), Gaps = 5/197 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ DR+IEI AV++ + ++   +F+ ++ P  R  S    +L  IT++
Sbjct: 429 YVVFDVETTGLSAERDRLIEIAAVKVKNGTEI-DSFESYINPQ-RPISELITRLTSITND 486

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P    + + F+++  +++   +AHNAKFD+GF++   +R+  +  + + I     
Sbjct: 487 DVRDAPLEKEVMTNFYNWL-DKDDILVAHNAKFDLGFLDTCFERLGLENKNNASIDTLFV 545

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  + R+ L++L K Y   +     H A+ D+   +++++KM+    ++   +   
Sbjct: 546 SRAENKEAKRHGLSNLAKLY--KVRLVQHHRAIYDTKATAEIFVKMLDQLYELGIEYHNE 603

Query: 189 EDRFFKEEKKTVPNISL 205
            D     E     + + 
Sbjct: 604 IDEKIDLELAHKRSRTF 620


>gi|241888547|ref|ZP_04775855.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
           haemolysans ATCC 10379]
 gi|241864814|gb|EER69188.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
           haemolysans ATCC 10379]
          Length = 1449

 Score = 89.6 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 102/197 (51%), Gaps = 5/197 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ DR+IEI AV++ + ++   +F+ ++ P  R  S    +L  IT++
Sbjct: 429 YVVFDVETTGLSAERDRLIEIAAVKVKNGAEI-DSFESYINPQ-RPISELITRLTSITND 486

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    + + F+++  +++   +AHNAKFD+GF++   +R+  +  + + I     
Sbjct: 487 DVKDAPLEKEVMTNFYNWL-DKDDILVAHNAKFDLGFLDTCFERLGLENKNNASIDTLFV 545

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  + R+ L++L K Y   +     H A+ D+   +++++KM+    ++   +   
Sbjct: 546 SRAENKEAKRHGLSNLAKLY--KVRLVQHHRAIYDTKATAEIFVKMLDQLYELGIEYHNE 603

Query: 189 EDRFFKEEKKTVPNISL 205
            D     E     + + 
Sbjct: 604 IDEKIDLELAHKRSRTF 620


>gi|167770615|ref|ZP_02442668.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM
           17241]
 gi|167667210|gb|EDS11340.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM
           17241]
          Length = 1445

 Score = 89.6 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 5/171 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGL +  +RI EIGAV+L +    +R F  F+ P  R   P+  +L GITD+ 
Sbjct: 427 IVFDLETTGLSAATERITEIGAVKLRNGEIVDR-FNTFVNPE-RSIPPKITELTGITDDD 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P       +F+ F    +A  IAHNA FD  F+    +R   +    +     LS 
Sbjct: 485 VRGAPLEGEALRQFYAFCGGSSAVLIAHNAPFDTSFLRQCARRCGMEYNFTAIDTVVLSR 544

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +                   + +   + H A  D+ +L+ +YI+MM     
Sbjct: 545 SLFPELKKHKLD---IVAKHLGLGEFNHHRACDDAEMLARIYIRMMELMQS 592


>gi|262365378|gb|ACY61935.1| DNA polymerase III, epsilon chain [Yersinia pestis D182038]
          Length = 128

 Score = 89.6 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 8/116 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           HGI+DEFL DKP+F+ I  EF DF        + HNA FD+GF++ E + + +D  
Sbjct: 66  HGISDEFLADKPTFADITPEFLDFIRGAE--LVIHNAAFDIGFMDYEFRMLQQDIP 119


>gi|154484752|ref|ZP_02027200.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC
           27560]
 gi|149734600|gb|EDM50517.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC
           27560]
          Length = 1474

 Score = 89.2 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 7/197 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFD+ETTG  +K+D+IIEIGAV++ +    +R F  F+ P          KL  I D
Sbjct: 408 RYVVFDLETTGFSAKSDKIIEIGAVKVENGKIIDR-FSTFVNPE-IPIPFRIEKLTSIND 465

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + D P    I  +F +F  +  +  +AHN+ FD+ FI A  +R + +          +
Sbjct: 466 EMVIDAPKIEEILPQFMEFCKD--SVMVAHNSDFDMSFIEANCKRQDLECDFTVIDTVAM 523

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           S         R  L+++ K  GI + H   H A+ D+   + +++K+             
Sbjct: 524 SRYLIIG-LGRYKLDNVAKALGIVLDH--HHRAVDDAECTALIFLKLCKMLEGKGIDNLD 580

Query: 188 NEDRFFKEEKKTVPNIS 204
             +R  K+ K  +  + 
Sbjct: 581 ELNRQGKQSKNLIDKLP 597


>gi|85706434|ref|ZP_01037528.1| putative exonuclease [Roseovarius sp. 217]
 gi|85669207|gb|EAQ24074.1| putative exonuclease [Roseovarius sp. 217]
          Length = 688

 Score = 89.2 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 6/173 (3%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
            +VFD ETTGL  +  D I++I  + +++        F + + P GR   P + ++H I+
Sbjct: 494 FVVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGECFDMLVNP-GRAIPPASTRVHHIS 552

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE ++  P        F DF     A  +AHNA FD+ F+  + + I +   +P      
Sbjct: 553 DEMVQGAPGIVEAGRRFHDFCQG--AVLVAHNAPFDLAFLRLKEKVIGRRFDNPVLCTVL 610

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +S A     S ++ L++LC R+GITI   ++H A+ D+   ++V+++M+    
Sbjct: 611 MS-AGLFDHSGQHTLDALCDRFGITIPPEARHTAMGDTVATAEVFVRMLGLLQ 662


>gi|94985918|ref|YP_605282.1| DNA polymerase III, epsilon subunit [Deinococcus geothermalis DSM
           11300]
 gi|94556199|gb|ABF46113.1| DNA polymerase III, epsilon subunit [Deinococcus geothermalis DSM
           11300]
          Length = 180

 Score = 89.2 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 8/182 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCP-----NGRKNSPEAL 60
           M  +VFD+ETTGL  + D I+EIGA+ ++D        F+  + P             A 
Sbjct: 1   MNVVVFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQ 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGI+D  ++D P    +  EF DF     +   AHN  FD  F+ A  +R       P
Sbjct: 61  RVHGISDAMVQDAPELGQVLPEFLDFV--GRSAVAAHNIGFDSSFMRAAARRCGLVWAPP 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +         R       ++L+ L +R G++ +   +H +L D  + ++ ++++M   S 
Sbjct: 119 AEYCTVQLSRRAFPRERTHNLDVLAQRLGLSFAPGGRHRSLGDVQVTAEAFVRLMERLSV 178

Query: 181 IN 182
           + 
Sbjct: 179 LG 180


>gi|2833216|sp|Q08880|DPO3E_BUCAP RecName: Full=DNA polymerase III subunit epsilon
 gi|1794288|gb|AAC44791.1| DNA polymerase III epsilon chain [Buchnera aphidicola]
          Length = 233

 Score = 89.2 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 93/239 (38%), Positives = 129/239 (53%), Gaps = 15/239 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            N  R IV D ETTG++S        RIIEIGA+E+++   T + F  ++ PN R    +
Sbjct: 2   NNTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN-RLIESD 60

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INK 115
           A K+HGITD+FL DKPSF  I  +F+++        I HNA FDVGFIN E        +
Sbjct: 61  ASKIHGITDDFLSDKPSFKDIAKDFFNYIKNSE--LIIHNASFDVGFINQEFSMLTKKIQ 118

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D  +   IIDTL IAR+  P  +N L++LC RY I  SHR  HGA+LD+ LL  +Y+ M 
Sbjct: 119 DISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGKLYLLMT 178

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
            G   I F      +R F+  KK++      K       +  K EL  H++ ++ L + 
Sbjct: 179 SGQESIIFNKNIQNERNFRYIKKSITK----KHRFLKIIKANKTELKLHNEYLKFLKEK 233


>gi|163732758|ref|ZP_02140203.1| exonuclease, putative [Roseobacter litoralis Och 149]
 gi|161394118|gb|EDQ18442.1| exonuclease, putative [Roseobacter litoralis Och 149]
          Length = 465

 Score = 88.8 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 5/176 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGLD   D ++++GAV +++        F   + P GR   P +  +H I D
Sbjct: 273 FVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNP-GRTIPPGSTAVHQIND 331

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P F      F      ++A  +AHNA FD+ F+  + +  +    +P      L
Sbjct: 332 AMVADAPGFDVACRAFHQ--FAEHAVIVAHNAPFDMAFLRRQCRNQDYAFDNPVLDTVHL 389

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           S A     S+ + L++LC R  + I    +H  L D+   +   + ++       F
Sbjct: 390 S-AVVFGGSAEHTLDALCNRLNVHIPDDVRHTGLGDALATAKALVALIPVLEARGF 444


>gi|323191554|gb|EFZ76814.1| DNA polymerase III subunit epsilon domain protein [Escherichia coli
           RN587/1]
          Length = 155

 Score = 88.8 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 60/149 (40%), Positives = 88/149 (59%), Gaps = 11/149 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP+F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNATFDIGFMDYEFSLLKRDIPKTNT 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
             ++ D+L++AR+  P  RN L++LC RY
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARY 152


>gi|255284409|ref|ZP_05348964.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella
           formatexigens DSM 14469]
 gi|255265034|gb|EET58239.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella
           formatexigens DSM 14469]
          Length = 1530

 Score = 88.8 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 84/209 (40%), Gaps = 6/209 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG     +RIIEIGAV++ +   T+R F  F+ P          +L  I D  
Sbjct: 511 VVFDLETTGFSPTQNRIIEIGAVKVENGEITDR-FSTFVNPQ-VPIPFRIEQLTSINDNM 568

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128
           + D P+   +  EF DF  +  A   AHNA FDV FI   ++R            +    
Sbjct: 569 VMDAPTIEQVLPEFLDFVGD--AVLAAHNASFDVSFIEENMRRLGLWRDFTYVDTVALAR 626

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +   +    + D  +      +   HR+   A   + +    +++M+       F     
Sbjct: 627 VLLPQLNRFKLDTVAKALHVQLQHHHRAVDDAECTAGIYLK-FMEMLKLQGADTFDQVNE 685

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
                 ++ K +P   ++   K    R+ 
Sbjct: 686 LGSASLDQIKKLPTYHVIILAKNDVGRVN 714


>gi|218461621|ref|ZP_03501712.1| DNA polymerase III subunit epsilon [Rhizobium etli Kim 5]
          Length = 115

 Score = 88.8 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 52/101 (51%), Positives = 70/101 (69%), Gaps = 2/101 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           DEFLKDK +F+ +  E   FF +      AHNA FD+GFIN
Sbjct: 61  DEFLKDKKAFAEVAEEILAFFGDAKWI--AHNATFDMGFIN 99


>gi|110678446|ref|YP_681453.1| exonuclease, putative [Roseobacter denitrificans OCh 114]
 gi|109454562|gb|ABG30767.1| exonuclease, putative [Roseobacter denitrificans OCh 114]
          Length = 465

 Score = 88.8 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGLD   D ++++GAV +++        F   + P GR   P +  +H I+D
Sbjct: 273 FVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNP-GRTIPPGSTAVHQISD 331

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P F      F      ++A  +AHNA FD+ F+  + +  +    +P      L
Sbjct: 332 AMVADAPGFDVACRAFHQ--FAEHAVIVAHNAPFDMAFLRRQCRDQDYAFDNPILDTVHL 389

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           S A     S+ + L++LC R  + I    +H  L D+   +   + ++       F
Sbjct: 390 S-AVVFGGSAEHTLDALCDRLNVHIPDDVRHTGLGDALATAKALVALIPVLEARGF 444


>gi|218133709|ref|ZP_03462513.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991084|gb|EEC57090.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1403

 Score = 88.5 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 10/212 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFDIETTG  ++NDRIIEIGAV++ D    +R F  F+ P       +  KL  I D
Sbjct: 372 KYVVFDIETTGFSAENDRIIEIGAVKIEDGEIIDR-FSTFVNPE-VPIPFKIEKLTSIND 429

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P    +  EF +F        +AHNA+FD GFI  +  +      +       +
Sbjct: 430 SMVMGAPKIEQVLPEFLEFCEG--CVVVAHNAEFDTGFIRNKAAKQGMTFDNTVVDTLAI 487

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +        +              +   S H A+ D+   + +++KM      +      
Sbjct: 488 ARFLVPRLHNFKLDT---LTKHFNVVLTSHHRAVDDAEATAGIFLKMCEL---LKMRDIL 541

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
             D+  +     V  I  +     +    +++
Sbjct: 542 TLDQLNEAGTPDVDAIRKMPTYHIILLASSEQ 573


>gi|213021700|ref|ZP_03336147.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213612768|ref|ZP_03370594.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 164

 Score = 88.5 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 60/149 (40%), Positives = 87/149 (58%), Gaps = 11/149 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI DEFL DKP F+ +  EF D+        + HNA FD+GF++ E    +R       
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
             ++ D+L++AR+  P  RN L++LC RY
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRY 155


>gi|329769168|ref|ZP_08260588.1| DNA polymerase III [Gemella sanguinis M325]
 gi|328839387|gb|EGF88965.1| DNA polymerase III [Gemella sanguinis M325]
          Length = 1449

 Score = 88.5 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 98/186 (52%), Gaps = 5/186 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ DR+IEI AV++ + S+   +F+ ++ P  R  S    +L  ITD+
Sbjct: 429 YVVFDVETTGLSAERDRLIEIAAVKVKNGSEI-DSFESYINP-RRPISELITRLTSITDD 486

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    + + F+++  +++   +AHNAKFD+GF++   +R+     + + I     
Sbjct: 487 DVKDAPFEEEVMTNFYNWL-DEDDILVAHNAKFDLGFLDKSFERLGLKNKNNASIDTLFI 545

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  + R+ L++L K Y   +     H A+ D+   +++++KM+    ++   +   
Sbjct: 546 SRAENKEAKRHGLSNLAKLY--KVRLVQHHRAIYDTKATAEIFVKMLDQLYKLGIEYHNE 603

Query: 189 EDRFFK 194
            D    
Sbjct: 604 IDEKID 609


>gi|119387281|ref|YP_918315.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119377856|gb|ABL72619.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 659

 Score = 88.1 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 4/175 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD ETTGLD   DRI++I  + +     T   F   + P GR   P +  +HGITD  
Sbjct: 454 VVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDP-GRPIPPASTAVHGITDAM 512

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  ++  + F      ++   +AHNA FD+GF+   +        D   +   L  
Sbjct: 513 VAGAPDMTAALTAFHH--FAEDTVLVAHNAPFDMGFLRRAV-PETGAHFDNQVLDTVLLS 569

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           A     S+ + L++L +R GI I   ++H A+ D+   ++ Y++++         
Sbjct: 570 AMLWGQSAPHSLDALTERLGIVIPPEARHTAMGDARATAEAYLRLIAALEAKGLD 624


>gi|254469279|ref|ZP_05082684.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Pseudovibrio sp. JE062]
 gi|211961114|gb|EEA96309.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Pseudovibrio sp. JE062]
          Length = 471

 Score = 88.1 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 5/177 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGL    D I++IGAV +++       T    + P GR     +  +H ITD
Sbjct: 279 FVVFDTETTGLMPNKDEIVQIGAVRVVNRRIIPGETVDQLVNP-GRPIPAASTGVHRITD 337

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + + P   +  S+F      ++A  +AHNA FD+ F+             P      L
Sbjct: 338 DMVVNAPDPVTATSDF--HVFAKDAVIVAHNAPFDMAFLQRYGHMSGHVWDHPILDTVLL 395

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           S A        + L++LC R  I I    +H AL D+   +    K++   +   F 
Sbjct: 396 S-AVVFGAEQEHTLDALCARLDIEIPEALRHTALGDAQATAQALCKLLPILTSRGFD 451


>gi|296132882|ref|YP_003640129.1| DNA polymerase III, alpha subunit [Thermincola sp. JR]
 gi|296031460|gb|ADG82228.1| DNA polymerase III, alpha subunit [Thermincola potens JR]
          Length = 1442

 Score = 87.3 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG     D IIEIGAV++      +R F  F+CP GR+  PE  +L GIT+ 
Sbjct: 430 YVVFDLETTGFSPVTDEIIEIGAVKIHGNKILDR-FSAFVCP-GREIPPEVQELTGITNN 487

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P  + +  +F DF  +  A  +AHNA+FD GF+ A +++I    L    +     
Sbjct: 488 MVSDAPPIAEVLPKFIDFVGD--AVLVAHNAQFDTGFLRANMEKILNRTLAQPVLDTLGL 545

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                     + L +L K + +     + H A+ D+   + + IK +   ++ N  
Sbjct: 546 ARGLFPDMKNHKLKTLAKEFNVK--LENHHRAVDDAEATAQLLIKFLERLAEHNID 599


>gi|259415529|ref|ZP_05739450.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
 gi|259348759|gb|EEW60521.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
          Length = 473

 Score = 87.3 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 7/210 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGL  + D I++I A  +++        F  ++ P GR   P + ++HG+ D
Sbjct: 270 FVVFDTETTGLSVETDAIVQIAAQRVMNGRLVKGEVFDAYVNP-GRAIPPASTRIHGVRD 328

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D PS   +   F      ++A  +AHNA FD+G +  + +        P      L
Sbjct: 329 ADVADAPSIEQVIPAFHH--FSKDAVLVAHNAPFDIGLLRQQERATGIKWDHPVLDTVLL 386

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           S A     S  + L++LC+R  I I  + +H AL D+   ++  +K++            
Sbjct: 387 S-AVVFGISQEHSLDALCQRLAIEIPAQHRHTALGDAKATAEALVKLLPLLQGKGIETFG 445

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
              +  ++  + + +++   +      ++T
Sbjct: 446 ELVQETRKHGRLLKDMN--PKQPKRVVQLT 473


>gi|226323840|ref|ZP_03799358.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
 gi|225207389|gb|EEG89743.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
          Length = 1535

 Score = 87.3 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 7/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  +  DRIIEIGAV++ D   T++ F  F+ P  R       +L  ITDE
Sbjct: 489 YVVFDIETTGFSAVTDRIIEIGAVKVEDGKITDK-FSTFVNPK-RPIPFRITELTSITDE 546

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   +I  +F +F  +  A  +AHNA FDVGFI    +R   +          L+
Sbjct: 547 MVIDSPDIETILPQFIEFIGD--AVLVAHNASFDVGFIEQNCKRQKIEADFTYVDTVALA 604

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  +             + IS  + H A+ D+   +++++K +    +        
Sbjct: 605 RVLLPALNRFKLDTVAKA---LNISLENHHRAVDDAGCTAEIFVKFVQMLKERELTTLAK 661

Query: 189 EDRFFKEEKKTVPNIS 204
            + F      ++  + 
Sbjct: 662 VNEFGDLNPDSIKKLP 677


>gi|126737494|ref|ZP_01753224.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. SK209-2-6]
 gi|126720887|gb|EBA17591.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. SK209-2-6]
          Length = 465

 Score = 87.3 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 5/174 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           VFD ETTGL    D I++IGA+ +++        F+  + P G      +  +HG+T E 
Sbjct: 260 VFDTETTGLLPHKDEIVQIGALRVVNGRLVNGEGFETLVNP-GFDIPAASTAVHGVTTEM 318

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ P   +  + F  F  +  +  +AHNA FD+ F+    +    D          LS 
Sbjct: 319 VRNSPMIKTAGAAFHQFCKD--SVLVAHNAPFDIAFLRRHAKSSGVDWNHMVLDTVLLS- 375

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           A     S  + L++LC R  I I    +H A+ D+   ++  ++M+       F
Sbjct: 376 AVIFGASVPHTLDALCDRLEINIPEALRHTAMGDAQATAEALLRMLPMLEARGF 429


>gi|226356768|ref|YP_002786508.1| DNA polymerase III subunit epsilon [Deinococcus deserti VCD115]
 gi|226318758|gb|ACO46754.1| putative DNA-directed DNA polymerase (DNA polymerase III, epsilon
           subunit) [Deinococcus deserti VCD115]
          Length = 202

 Score = 87.3 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 8/176 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCP-----NGRKNSPEAL 60
           M  +VFD+ETTGL  + D I+EIGA+ +++        ++  + P             A 
Sbjct: 1   MNVVVFDLETTGLSPERDGIVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPWHAQ 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGI++E ++  P+   +  EF +F  +  +  +AHN  FD GF+ A+ +R+       
Sbjct: 61  RVHGISNEMVRSAPTIEEVLPEFLEFVGD--SAVVAHNVGFDCGFMRAQARRLGMVWAPA 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                     R       ++L  L +R G+  +   +H +  D  + +  Y++++ 
Sbjct: 119 GEHCTVQLSRRAFPKERAHNLTVLAERLGLNFAPGGRHRSFGDVQVTAHAYVRLLE 174


>gi|225388986|ref|ZP_03758710.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme
           DSM 15981]
 gi|225044966|gb|EEG55212.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme
           DSM 15981]
          Length = 1561

 Score = 86.9 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 10/212 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG   + +RIIEIGAV++ D   T++ F  F+ P+      +  KL  I D 
Sbjct: 538 YVVFDIETTGFSPEKNRIIEIGAVKVTDGKITDK-FSTFVNPD-VPIPFDIEKLTSINDA 595

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P    I  +F +F  +  A  +AHNA FDVGFI    ++          ++DT++
Sbjct: 596 MVLPYPKIDVILPQFLEFVGD--AALVAHNASFDVGFIGHYAEKQGLA--FNPTVLDTVT 651

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGGSQINFGF 185
           +AR   P+          +  + IS  + H A+ D+   +++   ++KM+          
Sbjct: 652 MARLLLPNLNRFKLDTVAKA-LNISLANHHRAVDDAGCTAEIFAAFVKMLRDRDVETLDQ 710

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
             + +   ++  + +P   ++   K    RI 
Sbjct: 711 LNSLNAMNEDTIRKLPTYHVIILAKNDIGRIN 742


>gi|213162306|ref|ZP_03348016.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 145

 Score = 86.9 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/108 (43%), Positives = 65/108 (60%), Gaps = 8/108 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           HGI DEFL DKP F+ +  EF D+        + HNA FD+GF++ E 
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEF 114


>gi|306820890|ref|ZP_07454510.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551004|gb|EFM38975.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 1398

 Score = 86.9 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + IVFD+ETTG  ++ND I EIGA+++ +       F   + P  R    +  KL GIT+
Sbjct: 381 KYIVFDLETTGFSNRNDAITEIGAIKVENGEIV-EEFSQLINPE-RPIPEKIQKLTGITN 438

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + DKP+ S +  +F DF  +  +  +AHN+ FD GF+  +    N      +     L
Sbjct: 439 EMVIDKPTISEVLPKFLDFCKD--SILVAHNSDFDTGFVREKASENNLPYDFDAIDTVIL 496

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-FK 186
           S        +        +   + +S  + H A+ D+   + +++  +     +    F 
Sbjct: 497 SRLLMPDLKNHKLNTIAKE---LNVSLENHHRAVDDATATAQIFLNFISKLKAMEIENFN 553

Query: 187 TNEDRFFKEEKKTVP--NISLLKRDKPLFTRITKEELDEHDKTI 228
              ++    +   +   N  +L +++     + K     H K +
Sbjct: 554 EINEKIKSIDTSKIRPVNAVILAKNQAGVKDLYKLVSLAHTKYL 597


>gi|146276555|ref|YP_001166714.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554796|gb|ABP69409.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 695

 Score = 86.5 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 5/177 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGL    D I++I AV +++  +     F   + P  R   P + ++HGITD
Sbjct: 496 YVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVFDTLVNP-RRPIPPSSTEVHGITD 554

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P  + +  +F      + A  +AHNA FD+       + +     D   +   L
Sbjct: 555 AMVADAPDMTEVGRQFHK--FAEGAVLVAHNAPFDM-EFLRRAELLIDRRFDNPILDTVL 611

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
             A     +  + L++L  R GITI   ++H A+ D+   +D ++K++       F 
Sbjct: 612 LSAVLFGQTEVHSLDALAHRLGITIPEEARHTAIGDTVATADAFLKLLPMLQGRGFE 668


>gi|168334980|ref|ZP_02693097.1| DNA polymerase III, alpha subunit [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 1454

 Score = 86.1 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 12/224 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S +++IIEIGAV++ +      TF  F+ P          +L GIT  
Sbjct: 436 FVIFDLETTGLSSSSNKIIEIGAVKIRNGKII-DTFSSFVNPET-DIPEHITELTGITTT 493

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+ +++  +F +F     A  +AHNA FD+GFI    + +  +         +++
Sbjct: 494 DIADAPTIAAVLPQFVEFCAS--AILVAHNADFDMGFILHNTRDLAIEFNKTYIDTVSMA 551

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFGF 185
                +  +    N   K   + +S ++ H A+ D+   +++++   +M+      N   
Sbjct: 552 RILLPNLGNAKLSNIANK---LKVSLKNHHRAVDDASATAEIFLKFIEMLAQREIRNLDQ 608

Query: 186 KTNEDRFFKEEKKTVPNIS--LLKRDKPLFTRITKEELDEHDKT 227
                    E  K +P     +L +++     + K     H   
Sbjct: 609 LNELSNTSAEAIKKLPTYXGIILVKNEIGRINLNKLVSASHLDY 652


>gi|116672512|ref|YP_833445.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24]
 gi|116612621|gb|ABK05345.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24]
          Length = 406

 Score = 86.1 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 93/250 (37%), Gaps = 21/250 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL   N RI EI  V +      +  ++  + P           +HGI   
Sbjct: 5   FAVVDVETTGLFPGNHRIAEIAVVHVDPDGTVSNRWETLVNPQRDLGP---QHIHGIRAA 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127
            +   P F  I  +  +         +AHN  FD  F++ E  +   + P +    + T+
Sbjct: 62  DILHAPVFGDIAHDVMELLAG--RVLVAHNVHFDYRFVSHELGRAGLELPFEVHDCLCTM 119

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            +ARR  P +   L   C  +G+     + H A  D+   + V    +   S     F  
Sbjct: 120 KLARRYLPGAGRSLKDCCDSFGLN--LANAHSAGDDAEAAAHVLSNYLRMDSGNPEWFSA 177

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP-----------LFTRITK-EELDEHDKTIQTLGKNA 235
            +  +F       P        +P           L  R+ +    DEH+  +  L + A
Sbjct: 178 LDRAYFSSWPAVEPKRRQPALRRPAGEPQTHFLERLVNRLPEVAGPDEHNAYLAMLDR-A 236

Query: 236 IWDRYISSNQ 245
           + DR IS ++
Sbjct: 237 LMDRQISVSE 246


>gi|114707953|ref|ZP_01440845.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Fulvimarina pelagi HTCC2506]
 gi|114536582|gb|EAU39714.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Fulvimarina pelagi HTCC2506]
          Length = 466

 Score = 86.1 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 5/168 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
             VFD ETTGL    D I++IGA+ ++D       TF   + P G      + K+HGITD
Sbjct: 274 YCVFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTLVDPGG-PIPRASSKIHGITD 332

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +P  +     F++    + +  +AHNA FD+ F+    + +      P       
Sbjct: 333 KMVMGQPRIAEAGRRFFE--FSKESVLVAHNAPFDMSFLRRHEKAMGVAFDHPIVDTVL- 389

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             A     + R+ L+ +C+R GI I  + +H AL D+ + ++   +M+
Sbjct: 390 VSAIIFGTTERHMLDVVCERLGIRIEKKDRHTALGDARVTAEAMKRML 437


>gi|229544431|ref|ZP_04433489.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
 gi|229324916|gb|EEN90593.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
          Length = 1442

 Score = 86.1 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 6/188 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIEI AV++ D      TF+ F  P GR  S   ++L  ITD+
Sbjct: 427 YVVFDVETTGLSAVYDTIIEIAAVKIQDGEVV-DTFERFANP-GRPLSNTIIELTHITDD 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD P  S +  E+ ++  +  A  +AHNA FD+GF+N  L++      +   I     
Sbjct: 485 MLKDAPDISEVLKEYNEWIGD--AVLVAHNASFDIGFLNVGLKKAGLPKSNNPVIDTLEL 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       LN+L K++ +       H A+ D+     +++KM+         +   
Sbjct: 543 GRFLYPDFKNYRLNTLAKKFNVE--LTQHHRAIYDTEATGQIFLKMLKDARNRGITYHDE 600

Query: 189 EDRFFKEE 196
            +++  E 
Sbjct: 601 LNQYMGEG 608


>gi|237744035|ref|ZP_04574516.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
 gi|229431264|gb|EEO41476.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
          Length = 1449

 Score = 86.1 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 6/191 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++  ITDE
Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEITSITDE 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++P    +  +F DF  +  A  +AHNA FD+GFI  ++++        S I     
Sbjct: 480 QVANEPKIDKVIGKFVDFIGD--AVLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQM 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L  L K  G+       H A+ DS   ++++I  +    +    +  +
Sbjct: 538 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGLEYMKD 595

Query: 189 EDRFFKEEKKT 199
            +  F+   K 
Sbjct: 596 INTGFEVNVKK 606


>gi|260494375|ref|ZP_05814506.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_33]
 gi|260198521|gb|EEW96037.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_33]
          Length = 1449

 Score = 85.8 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 6/191 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++  ITDE
Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEITSITDE 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++P    +  +F DF  +  A  +AHNA FD+GFI  ++++        S I     
Sbjct: 480 QVANEPKIDKVIGKFVDFIGD--AVLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQM 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L  L K  G+       H A+ DS   ++++I  +    +    +  +
Sbjct: 538 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGLEYMKD 595

Query: 189 EDRFFKEEKKT 199
            +  F+   K 
Sbjct: 596 INTGFEVNVKK 606


>gi|295091739|emb|CBK77846.1| DNA polymerase III, alpha chain, Gram-positive type [Clostridium
           cf. saccharolyticum K10]
          Length = 1037

 Score = 85.8 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 10/211 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG     +RIIEIGAV++ +    +R F  F+ P       E  KL  I+D  
Sbjct: 198 VVFDIETTGFSPLKNRIIEIGAVKVENGKIVDR-FSTFVNPE-VPIPFEIEKLTSISDNM 255

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P    +  +F +F ++  A  +AHNA FD+ FI        K          +++ 
Sbjct: 256 VLGAPKIEEVLPKFLEFCSD--AVMVAHNASFDMSFIRHNAMIQGKSFEPTVLDTVSMAR 313

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGGSQINFGFK 186
               + +         +     IS  + H A+ D+   +++   +++M+      N    
Sbjct: 314 FLLPNLNRFKLDTVAKELR---ISLENHHRAVDDAGATAEIFVKFVEMLKSRGIENLDEL 370

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
             + R   E  + +P   ++   K    RI 
Sbjct: 371 NEQSRMSVETIRKMPTNHIIILAKNDVGRIN 401


>gi|312960549|ref|ZP_07775055.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
 gi|311285075|gb|EFQ63650.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
          Length = 105

 Score = 85.8 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 8  RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          R +V D ETTG+      RIIEIG VEL+    T R F V+L P+ R +   A+ +HGIT
Sbjct: 4  RSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPD-RDSDEGAIGVHGIT 62

Query: 67 DEFLKDKPSFSSIFSEFWDFFN 88
          DEFLK KP F+ +  EF++F N
Sbjct: 63 DEFLKGKPRFAEVADEFFEFIN 84


>gi|169824428|ref|YP_001692039.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328]
 gi|167831233|dbj|BAG08149.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328]
          Length = 1421

 Score = 85.4 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 7/194 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL +  ++I EIGAV+++D    +  F   + P       +  +L  IT+E
Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDNKIVDE-FNQLINPE-IPIPEKITELTSITNE 459

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P   ++  EF  F  +     IAHNA FD+GFI      +  +P+         +
Sbjct: 460 MVKDMPKIDAVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCIDLGINPVRTYIDTLAFA 517

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
            A   H  +              ++  + H A  D+    +V+I M+    Q  F F  N
Sbjct: 518 RALEPHLKNHKLDT---LTKKYNVNLFNHHRACDDARATGEVFICMVNNLEQRGFKFDIN 574

Query: 189 EDRFFKEEKKTVPN 202
            ++   +   +   
Sbjct: 575 INQMDSDWSISKRE 588


>gi|239626437|ref|ZP_04669468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516583|gb|EEQ56449.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1554

 Score = 85.4 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 4/209 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG   K ++IIEIGAV+++D   T+R F  F+ P+      +  KL GI D 
Sbjct: 531 FVVFDIETTGFSPKKNKIIEIGAVKVVDGKITDR-FSSFVNPD-VPIPFDIEKLTGINDS 588

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P    I  +F DF  +  A  +AHNA FDVGFI+   +              T++
Sbjct: 589 MVLPYPKIDVILPQFLDFVGD--AVLVAHNASFDVGFISHFAEEQGLHFNPTVLDTVTIA 646

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                + +                +H         +  +   +++M+      +      
Sbjct: 647 RLLLPNLNRFKLDTVAKALNISLANHHRAVDDAGATAEIFAAFVRMLRDRGVTDLEALNG 706

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
                    + +P   ++   K    R+ 
Sbjct: 707 MSTMDTNTIRKLPTYHVIILAKNDIGRVN 735


>gi|289550944|ref|YP_003471848.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658446|ref|ZP_07911318.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
 gi|289180476|gb|ADC87721.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496775|gb|EFU85098.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
          Length = 1438

 Score = 85.4 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 101/203 (49%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  P+ +K S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDQIIELAAVKVYDGEIIDK-FERFSNPH-QKLSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +RI   P     I     
Sbjct: 480 MLTDAPEIDEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERIGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMLQQMKELGVS---- 591

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                K+  K + N    KR +P
Sbjct: 592 ---NHKDINKKLSNEDAYKRARP 611


>gi|239827467|ref|YP_002950091.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus sp. WCH70]
 gi|239807760|gb|ACS24825.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           WCH70]
          Length = 921

 Score = 85.4 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 7/177 (3%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++ D+ETTG +  K DRII++G V + +    +R F  F  P  R   P   +L  IT
Sbjct: 4   RFVIIDLETTGNVPKKGDRIIQLGMVVIENGKIVDR-FSSFFNPE-RDIPPFVQQLTNIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ + D PSF+   ++  D   +      AHN  FD+ F+  EL      P     I   
Sbjct: 62  EQMVADAPSFAEEAAKVADMLQQSYFV--AHNVSFDLQFLQEELHMAGLPPFSGPTIDTV 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                    +    L  L K+  I       H A  D+ + + ++I ++    Q+ F
Sbjct: 120 ELARIVFPTAESYKLGDLAKQLHIDH--DQPHQADSDAEVTAKLFIALLNRLRQLPF 174


>gi|303233818|ref|ZP_07320472.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna BVS033A4]
 gi|302495252|gb|EFL55004.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna BVS033A4]
          Length = 1421

 Score = 85.4 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 7/194 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL +  ++I EIGAV+++D    +  F   + P       +  +L  IT+E
Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDNKIVDE-FNQLINPE-IPIPEKITELTSITNE 459

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P   ++  EF  F  +     IAHNA FD+GFI      +  +P+         +
Sbjct: 460 MVKDMPKIDAVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCIDLGINPVRTYIDTLAFA 517

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
            A   H  +              ++  + H A  D+    +V+I M+    Q  F F  N
Sbjct: 518 RALEPHLKNHKLDT---LTKKYNVNLFNHHRACDDARATGEVFICMVNNLEQRGFKFDIN 574

Query: 189 EDRFFKEEKKTVPN 202
            ++   +   +   
Sbjct: 575 INQMDSDWSISKRE 588


>gi|283798089|ref|ZP_06347242.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
 gi|291074233|gb|EFE11597.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
          Length = 1538

 Score = 85.4 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 10/211 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG     ++IIEIGAV++ +    +R F  F+ P       E  KL  I+D  
Sbjct: 514 VVFDIETTGFSPLKNKIIEIGAVKVENGKIVDR-FSTFVNPE-VPIPFEIEKLTSISDNM 571

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P    +  +F +F ++  A  +AHNA FD+ FI        K          +++ 
Sbjct: 572 VLGAPKIEEVLPKFLEFCSD--AVMVAHNASFDMSFIRHNAMIQGKSFEPTVLDTVSMAR 629

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGGSQINFGFK 186
               + +         +     IS  + H A+ D+   +++   +++M+      N    
Sbjct: 630 FLLPNLNRFKLDTVAKELR---ISLENHHRAVDDAGATAEIFVKFVEMLKSRGIENLDEL 686

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
             + R   E  + +P   ++   K    RI 
Sbjct: 687 NEQSRMSVETIRKMPTNHIIILAKNDVGRIN 717


>gi|325282490|ref|YP_004255031.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP]
 gi|324314299|gb|ADY25414.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP]
          Length = 185

 Score = 85.4 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 8/173 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCP-----NGRKNSPEALKLH 63
           +VFD+ETTGL  + D I+EIGA+ + D    T   +Q  + P             A ++H
Sbjct: 12  VVFDLETTGLSPERDGIVEIGALRIRDGRVVTEDPYQTLVRPQNSLGESVTIPWRAERIH 71

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++E +   PS + +  EF +     +A  +AHN  FD GF+ A  +           I
Sbjct: 72  GISNEMVVAAPSIAQVLPEFLE--WAGDAPLVAHNIGFDSGFMRAAARHCGLRWAPQREI 129

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  R      R++L+SL  R G++ S + +H +L D  + +  Y++++ 
Sbjct: 130 CTVQLSRRAFPRERRHNLDSLAGRLGLSFSPQGRHRSLGDVEVTAAAYLRLLE 182


>gi|325263721|ref|ZP_08130454.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. D5]
 gi|324030759|gb|EGB92041.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. D5]
          Length = 1498

 Score = 85.4 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 7/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTG  +  D+IIEIGAV++++    +R F  F+ P  R    +  +L  ITDE
Sbjct: 461 YIVFDLETTGFSAIKDKIIEIGAVKVVNGEIVDR-FSTFVNPK-RPIPFQITQLTSITDE 518

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P   +I  +F +    ++   +AHNA FDVGFI    +  + +P         ++
Sbjct: 519 MVMGYPDIETILPQFLE--FAKDGVLVAHNAGFDVGFIEQNCRYQDIEPHFVYVDTVAMA 576

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  S             + IS  + H A+ D+   S++++K +    + N      
Sbjct: 577 RVLLPTLSKYKLNVVAKA---LGISLENHHRAVDDAAATSEIFVKFVQMLKEQNITTLKE 633

Query: 189 EDRFFKEEKKTVPNIS 204
            +RF       +  + 
Sbjct: 634 MNRFGDMNPNAIRKLP 649


>gi|296329433|ref|ZP_06871922.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296153442|gb|EFG94272.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 1454

 Score = 85.4 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 6/191 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++  ITDE
Sbjct: 427 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEITSITDE 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++P    +  +F DF  +  A  +AHNA FD+GFI  ++++        S I     
Sbjct: 485 QVANEPKIDEVIGKFVDFIGD--AVLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQM 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L  L K  G+       H A+ DS   ++++I  +    +    +  +
Sbjct: 543 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLDKYKEKGLEYMKD 600

Query: 189 EDRFFKEEKKT 199
            +  F+   K 
Sbjct: 601 INVGFEVNVKK 611


>gi|291519550|emb|CBK74771.1| DNA polymerase III catalytic subunit, PolC type [Butyrivibrio
           fibrisolvens 16/4]
          Length = 1480

 Score = 85.4 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 7/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG + KN++IIEIGAV+  D       F  F+ P          +L  ITD+
Sbjct: 448 YVVFDIETTGFNPKNNKIIEIGAVKFKDGEIV-DHFSEFINPE-VPIPYRITELTSITDD 505

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   I  +F +F        +AHNA FD  FI    +++  +            
Sbjct: 506 MVLDAPTIDVILPKFMEFCKG--TVLVAHNAGFDTSFIRYNCKQLGLEYDYTHVDT-VEV 562

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  ++R +L+++CK   +   H   H A+ D+ + + ++ K +V     N    T 
Sbjct: 563 ARYLHPNNARFNLDAVCKLENVVNEH--HHRAVADAEVTAKIFEKFIVKLEAENIHTLTE 620

Query: 189 EDRFFKEEKKTVPNIS 204
            +   K + + +  + 
Sbjct: 621 LNDKAKPKAEQIKKMK 636


>gi|19703626|ref|NP_603188.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713736|gb|AAL94487.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 1454

 Score = 85.0 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 6/191 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++  ITDE
Sbjct: 427 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEITSITDE 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++P    +  +F DF  +  A  +AHNA FD+GFI  ++++        S I     
Sbjct: 485 QVANEPKIDEVIGKFVDFIGD--AVLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQM 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L  L K  G+       H A+ DS   ++++I  +    +    +  +
Sbjct: 543 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLDKYKEKGLEYMKD 600

Query: 189 EDRFFKEEKKT 199
            +  F+   K 
Sbjct: 601 INVGFEVNVKK 611


>gi|218510298|ref|ZP_03508176.1| DNA polymerase III subunit epsilon [Rhizobium etli Brasil 5]
          Length = 72

 Score = 85.0 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/70 (55%), Positives = 53/70 (75%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1  MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67 DEFLKDKPSF 76
          DEFLKDK +F
Sbjct: 61 DEFLKDKKAF 70


>gi|302380708|ref|ZP_07269173.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna ACS-171-V-Col3]
 gi|302311651|gb|EFK93667.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna ACS-171-V-Col3]
          Length = 1421

 Score = 85.0 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 7/194 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL +  ++I EIGAV+++D    +  F   + P       +  +L  IT+E
Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDNKIVDE-FNQLINPE-IPIPEKITELTSITNE 459

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P   ++  EF  F  +     IAHNA FD+GFI      +  +P+         +
Sbjct: 460 MVKDMPKIDAVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCIDLGINPVRTYIDTLAFA 517

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
            A   H  +              ++  + H A  D+    +V+I M+    Q  F F  N
Sbjct: 518 RALESHLKNHKLDT---LTKKYNVNLFNHHRACDDARATGEVFICMVNNLEQRGFKFDIN 574

Query: 189 EDRFFKEEKKTVPN 202
            ++   +   +   
Sbjct: 575 INQMDSDWSISKRE 588


>gi|167746785|ref|ZP_02418912.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662]
 gi|167653745|gb|EDR97874.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662]
          Length = 1475

 Score = 85.0 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 8/190 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG +S+ DRIIEIGAV+++D   T  TF  F+ P       +  +L  ITDE
Sbjct: 449 FVVFDIETTGFNSQTDRIIEIGAVKVIDGEIT-ETFSEFINPQ-IPIPFKITQLTTITDE 506

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +  +  ++   F +F  +  +  +AHNA FD GFI+   +R++ D          LS
Sbjct: 507 MVMNADTIDAVLPRFLEFCGD--SVLVAHNAGFDTGFIHENAKRLDLDFHPTIVDTLGLS 564

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-FGFKT 187
            +   H +     N       + I   + H A+ D+     ++IK +    +   F    
Sbjct: 565 RSLMTHLAKFTLDN---LCKNLNIKLETHHRAVDDATATGKIFIKFVQMLEEKEIFDLDQ 621

Query: 188 NEDRFFKEEK 197
             +     E 
Sbjct: 622 VNEFVAGSED 631


>gi|237785314|ref|YP_002906019.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758226|gb|ACR17476.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 616

 Score = 85.0 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 4/175 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGL +  DRIIEIGAV++    + +R F  F+ P GR   P    + GI+D+
Sbjct: 34  FVVVDLETTGLSAHEDRIIEIGAVKIHGGEEISR-FSTFVDP-GRLIPPLITNITGISDD 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  +    +F +    +    +AHNA+FD+GF+ A   R +     P+ +   + 
Sbjct: 92  DVNGAPKEAQAVKDFLE--FARGTVLVAHNARFDIGFLQAASMRAHITWPQPTHLCTLVL 149

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                   +               +    H AL D+     V+  ++      + 
Sbjct: 150 ARTMLDRCAVGSFKLSSLARHFHATTTPTHRALDDALATVTVFHGLLEELGSHDI 204


>gi|229829203|ref|ZP_04455272.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
           14600]
 gi|229792366|gb|EEP28480.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
           14600]
          Length = 1532

 Score = 85.0 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 6/210 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  ++ DRIIEIGAV +     T+R F  F+ P GR       +L  I D+
Sbjct: 500 FVVFDIETTGFSAEKDRIIEIGAVRMEGGRITDR-FSSFVNP-GRPIPFRITELTSIRDD 557

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDTL 127
            +        +  +F      Q A  +AHNA FD+GFI     +   + P      +   
Sbjct: 558 MVIGSAGIEEVLPDFLA--FSQGAIMVAHNADFDMGFIRQNCLRLHLEAPATYMDTVAMG 615

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                   + + +  +   +      HR+   A   +H+  + +I+M             
Sbjct: 616 RYLMPSLHNQKLNTLAKALKIDPGHHHRAVDDAEATAHI-FEKFIQMFRDRGMNELSDIN 674

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
              R   E  + +     +   +    RI 
Sbjct: 675 ANARMSDEVIRKMHANHCILIARNDIGRIN 704


>gi|313888341|ref|ZP_07822012.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845744|gb|EFR33134.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 1012

 Score = 85.0 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 8/197 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTGL S+ND+I EIGAV++ +    +R F   + P  ++     + L GI++  +
Sbjct: 2   VFDIETTGLSSRNDKITEIGAVKIKNGMIVDR-FSQLINPE-KEIPQVVVDLTGISNAMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +++P+   +  +F+D    ++A  +AHNAKFD+ FI  E    N     P      L+ A
Sbjct: 60  ENEPTIEEVILKFYD--FAKDAVLVAHNAKFDISFIRREYANNNLVFNHPILDTLVLARA 117

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFGFKTNE 189
                  R +L +LCK  G++      H A+ D+   ++V+IK++     +  F F+   
Sbjct: 118 TMSD-MKRFNLGTLCKNLGVS--LVGAHRAVNDAEATAEVFIKLIEKIKREEEFNFENLN 174

Query: 190 DRFFKEEKKTVPNISLL 206
                 + K +   SLL
Sbjct: 175 KEIVNIDSKRLFESSLL 191


>gi|7272366|gb|AAA27192.2| polymerase III epsilon (editing) subunit [Salmonella enterica
          subsp. enterica serovar Typhimurium]
          Length = 132

 Score = 85.0 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 6/84 (7%)

Query: 8  RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
          R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63 HGITDEFLKDKPSFSSIFSEFWDF 86
          HGI DEFL DKP F+ +  EF D+
Sbjct: 66 HGIADEFLLDKPVFADVVDEFLDY 89


>gi|52080748|ref|YP_079539.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus licheniformis ATCC 14580]
 gi|52786119|ref|YP_091948.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus licheniformis ATCC 14580]
 gi|319645294|ref|ZP_07999527.1| DinG protein [Bacillus sp. BT1B_CT2]
 gi|52003959|gb|AAU23901.1| ATP-dependent helicase [Bacillus licheniformis ATCC 14580]
 gi|52348621|gb|AAU41255.1| DinG [Bacillus licheniformis ATCC 14580]
 gi|317393103|gb|EFV73897.1| DinG protein [Bacillus sp. BT1B_CT2]
          Length = 930

 Score = 85.0 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 7/180 (3%)

Query: 5   NKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N  R +V D+ETTG   K  DRII+I AV + +   T R F  ++ PN +       +L 
Sbjct: 2   NNQRYVVIDVETTGNSPKKGDRIIQIAAVVIENGQITER-FSKYVNPN-QPIPAFIEQLT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++E ++++  FS+I  + ++  ++      AHN  FD+ F+  ELQ      ++ S +
Sbjct: 60  GISNEMVENEEPFSAIAEDIFELLHDSCFI--AHNIHFDLAFVKHELQLAGFGEIECSVL 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                            L  L +   I     + H A  D+ + + +++ MM    ++  
Sbjct: 118 DTVELSRIVFPGFDGYKLTELSEELQIRH--ENPHRADSDAEVTALIFLHMMDRLKRLPI 175


>gi|239617281|ref|YP_002940603.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239506112|gb|ACR79599.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 1430

 Score = 84.6 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 10/222 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGLD   D IIEIGAV+L         F  F+ P  R  S +  ++ GI+D 
Sbjct: 419 YVVFDLETTGLDPSADEIIEIGAVKLKGTEVIGE-FSSFVKPE-RNLSEKVTRITGISDR 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D PS S +  +F +F  +  +  +AHNA FD  F+   ++++  +      I     
Sbjct: 477 ELEDAPSLSEVLPKFLEFCKD--SVLVAHNATFDYRFVRNAVKQLYNEDWKLPYIDTLAL 534

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   S +  N + +   + +     H A  D+ + ++V+ K++    +        
Sbjct: 535 SKSLLKSKSYSLDNVVKR---LKLGDFEHHRASEDARITAEVFKKLLSMAKKRGIKKIAE 591

Query: 189 EDRFFKEEKKTVPN---ISLLKRDKPLFTRITKEELDEHDKT 227
            +   K    +      +++L ++K     + +     H K 
Sbjct: 592 LENLRKHINISSLRPLHVTILAKNKTGLRNLYELVTLSHTKY 633


>gi|294784973|ref|ZP_06750261.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_27]
 gi|294486687|gb|EFG34049.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_27]
          Length = 1449

 Score = 84.6 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 6/191 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++  IT+E
Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEITSITNE 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++P    +  +F DF  +  A  +AHNA FD+GFI  ++++        S I     
Sbjct: 480 QVANEPKIDKVIGKFVDFVGD--AVLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQM 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L  L K  G+       H A+ DS   ++++I  +    +    +  +
Sbjct: 538 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGLEYMKD 595

Query: 189 EDRFFKEEKKT 199
            +  F+   + 
Sbjct: 596 INTGFEVNVRK 606


>gi|126462986|ref|YP_001044100.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104650|gb|ABN77328.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 695

 Score = 84.6 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 5/177 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGL    D I++I AV +++  +         + P+ R   P + ++HGITD
Sbjct: 496 YVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPH-RPIPPSSTEVHGITD 554

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + + P    +   F      + A  +AHNA FD+       + +     D   +   L
Sbjct: 555 AMVAEAPDIVEVGRRFHK--FAEGAVLVAHNAPFDM-EFLRRAEPLIGRRFDNPILDTVL 611

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
             A     S  + L++L  R GITI   ++H A+ D+   +D ++K++       F 
Sbjct: 612 LSAVLFGQSDVHSLDALTHRIGITIPEEARHTAIGDTVATADAFLKLLPMLQGRGFE 668


>gi|332976806|gb|EGK13634.1| DNA polymerase III PolC [Desmospora sp. 8437]
          Length = 1099

 Score = 84.6 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 6/169 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + +D IIE+ AV++ D    +R F+ F+ P+ RK +    +L GITDE
Sbjct: 416 YVVFDVETTGLSAVHDEIIELAAVKVKDGEIIDR-FESFINPH-RKLTATITELTGITDE 473

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P  S +   + +F        +AHNA+FD+GF+ A  ++    P+D   +     
Sbjct: 474 MVVDAPELSEVLPRYLEFIEG--TVLVAHNARFDMGFLQAACKKTGCQPVDHPVLDTLEL 531

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                     + LN+LCK++   I     H A+ D+     +  +M+  
Sbjct: 532 GRFLYPRLKNHRLNTLCKQF--DIELTQHHRAIYDAEATGFLLWRMLQD 578


>gi|256028575|ref|ZP_05442409.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289766495|ref|ZP_06525873.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289718050|gb|EFD82062.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
          Length = 1449

 Score = 84.6 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 6/191 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++  ITDE
Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEITSITDE 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++P  + +  +F DF  +  A  +AHNA FD+GFI  ++++        S I     
Sbjct: 480 QVANEPKINEVIGKFVDFVGD--AVLVAHNAPFDMGFIKRDIKKYLNIDYKCSVIDTLQM 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L  L K  G+       H A+ DS   ++++I  +    +    +  +
Sbjct: 538 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGLEYMKD 595

Query: 189 EDRFFKEEKKT 199
            +  F+   K 
Sbjct: 596 INTGFEVNVKK 606


>gi|256845844|ref|ZP_05551302.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_36A2]
 gi|256719403|gb|EEU32958.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_36A2]
          Length = 1449

 Score = 84.6 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 6/191 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++  ITDE
Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEITSITDE 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++P    +  +F DF  +  A  +AHNA FD+GFI  ++++        S I     
Sbjct: 480 QVANEPKIDEVIGKFVDFVGD--AVLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQM 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L  L K  G+       H A+ DS   ++++I  +    +    +  +
Sbjct: 538 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGLEYMKD 595

Query: 189 EDRFFKEEKKT 199
            +  F+   + 
Sbjct: 596 INTGFEVNVRK 606


>gi|332559019|ref|ZP_08413341.1| putative exonuclease [Rhodobacter sphaeroides WS8N]
 gi|332276731|gb|EGJ22046.1| putative exonuclease [Rhodobacter sphaeroides WS8N]
          Length = 695

 Score = 84.2 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 5/177 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGL    D I++I AV +++  +         + P+ R   P + ++HGITD
Sbjct: 496 YVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPH-RPIPPSSTEVHGITD 554

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + + P    +   F      + A  +AHNA FD+       + +     D   +   L
Sbjct: 555 AMVAEAPDIVEVGRRFHK--FAEGAVLVAHNAPFDM-EFLRRAEPLIGRRFDNPILDTVL 611

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
             A     S  + L++L  R GITI   ++H A+ D+   +D ++K++       F 
Sbjct: 612 LSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVATADAFLKLLPMLQGRGFE 668


>gi|77464143|ref|YP_353647.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1]
 gi|77388561|gb|ABA79746.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1]
          Length = 695

 Score = 84.2 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 5/177 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGL    D I++I AV +++  +         + P+ R   P + ++HGITD
Sbjct: 496 YVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPH-RPIPPSSTEVHGITD 554

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + + P    +   F      + A  +AHNA FD+       + +     D   +   L
Sbjct: 555 AMVAEAPDIVEVGRRFHK--FAEGAVLVAHNAPFDM-EFLRRAEPLIGRRFDNPILDTVL 611

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
             A     S  + L++L  R GITI   ++H A+ D+   +D ++K++       F 
Sbjct: 612 LSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVATADAFLKLLPMLQGRGFE 668


>gi|315651645|ref|ZP_07904656.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
 gi|315486099|gb|EFU76470.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
          Length = 1483

 Score = 84.2 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 86/197 (43%), Gaps = 7/197 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTG  +KND I EIGAV++++    +R F  F+ P  R       +L  I+D 
Sbjct: 459 FIVFDIETTGFSAKNDAITEIGAVKVVNGEIVDR-FSTFVNPK-RPIPFRIEELTHISDA 516

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P    I  +F DF  +      AHNA FD GFI    +RIN +          ++
Sbjct: 517 MVVNAPVIEEILPKFLDFCEDYTIV--AHNAGFDTGFIRENAKRINAEYNPSIIDTVAMA 574

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R  L+++CK   I+      H A+ D+   ++++++ +           ++
Sbjct: 575 RLLLPD-LNRFKLDTVCKALNIS--LEGHHRAVNDAEATAEIWVEFIKRLKAKGINKLSD 631

Query: 189 EDRFFKEEKKTVPNISL 205
                +     V     
Sbjct: 632 VASLGETNADIVKKTKY 648


>gi|294783112|ref|ZP_06748436.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 1_1_41FAA]
 gi|294479990|gb|EFG27767.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 1_1_41FAA]
          Length = 1449

 Score = 84.2 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 6/191 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL+S  ++IIEIGAV++      +R +   + P G        ++  IT+E
Sbjct: 422 FVVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDR-YSQLINP-GISIPYHITEITSITNE 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++P    +  +F +F  +  A  +AHNA FD+GFI  +++      L+ S I     
Sbjct: 480 QVANQPKIDEVIGKFVEFIGD--AVLVAHNAPFDMGFIKRDIKEYLNIDLECSVIDTLQM 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L  L K  G+       H A+ DS   ++++I  +    +    +  +
Sbjct: 538 ARDLFPDFKKYGLGDLNKALGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGIEYLKD 595

Query: 189 EDRFFKEEKKT 199
            ++ F+   K 
Sbjct: 596 INKGFEVNVKK 606


>gi|242373555|ref|ZP_04819129.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
 gi|242348918|gb|EES40520.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
          Length = 1442

 Score = 84.2 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHDGEIIDK-FERFSNPHER-LSETIINLTHITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 484 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVN---- 595

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 596 ---NHNEINKKLTNEDAYKRARP 615


>gi|330984026|gb|EGH82129.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 234

 Score = 84.2 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 94/228 (41%), Gaps = 9/228 (3%)

Query: 12  FDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTGLD K  D+++E   VEL+D  KT R   ++  P            +   DE +
Sbjct: 2   FDTETTGLDPKTGDKMVEAAFVELIDRKKTGRFLHLYFDPKRDVPDEAREVHNLSRDELV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--IIDTLS 128
           +                  + A  +AHN+KFD GF + E Q      L      IID+L+
Sbjct: 62  RLSGGRVFGHFAQQIIDFIKGATLVAHNSKFDEGFFDMEFQHAGYGKLSDYCESIIDSLA 121

Query: 129 IARRKHPSSRNDLNS-LCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A  K P  +N L++ L +  G     R  HGALLD+ LL+ VY+ M V    ++     
Sbjct: 122 VASMKRPGRQNSLDALLREYVGTENYSREYHGALLDADLLAQVYLLMTVSQEGLSLD--- 178

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
              R         P    +         + +  ++ H    + + K +
Sbjct: 179 --TRLKATGPSLRPARLEVPEGALSVVSVNEAAMERHRSLSERIKKTS 224


>gi|221640011|ref|YP_002526273.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131]
 gi|221160792|gb|ACM01772.1| DNA polymerase III, epsilon subunit precursor [Rhodobacter
           sphaeroides KD131]
          Length = 695

 Score = 84.2 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 5/177 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGL    D I++I AV +++  +         + P+ R   P + ++HGITD
Sbjct: 496 YVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPH-RSIPPSSTEVHGITD 554

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + + P    +   F      + A  +AHNA FD+       + +     D   +   L
Sbjct: 555 AMVAEAPDIVEVGRRFHK--FAEGAVLVAHNAPFDM-EFLRRAEPLIGRRFDNPILDTVL 611

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
             A     S  + L++L  R GITI   ++H A+ D+   +D ++K++       F 
Sbjct: 612 LSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVATADAFLKLLPMLQGRGFE 668


>gi|307690728|ref|ZP_07633174.1| DNA polymerase III PolC [Clostridium cellulovorans 743B]
          Length = 1439

 Score = 83.8 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 11/212 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  S+NDRIIEIGAV++ +    +  F VF+ P  +    E  +L GI + 
Sbjct: 426 FVVFDIETTGFSSQNDRIIEIGAVKVKNGEIIDE-FSVFVNPQ-KDIPLEITELTGIDNY 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD  +   +  EF+DF +   +  +AHNA FD  FI       + +   P      L 
Sbjct: 484 MVKDAKTIDIVIKEFYDFVDG--SILVAHNAAFDTSFIKKNYLDNDLEFNYPIMDTIPL- 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF----G 184
                   ++  LN +CK  GIT    + H A+ D+   + V++K               
Sbjct: 541 CKYLYPALNKYKLNVICKYLGIT--LLNHHRAVDDAKATAMVFLKAQEELRSREIIKLSD 598

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                 +    +K  + +I LL +++     +
Sbjct: 599 LNKEYKQTQDIKKLPMNHIILLSKNQVGIKNL 630


>gi|153810942|ref|ZP_01963610.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174]
 gi|149832830|gb|EDM87913.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174]
          Length = 1439

 Score = 83.8 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 7/197 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFDIETTG      +IIEIGAV + +   T+R F  F+ P          +L  I D
Sbjct: 412 KFVVFDIETTGFSPLTCQIIEIGAVRVENGVITDR-FSTFVNPK-VPIPYRIEQLTSIND 469

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P   +I  +F +F     A  +AHNA FD+ FI    +R              +
Sbjct: 470 SMVMDAPDIQTILPQFLEFCAG--AVMVAHNADFDMSFIIENCKRQGLPQEYTYVDTVGM 527

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +        +R  L+++ K  G+++ H   H A+ D+   ++++++ +    + +     
Sbjct: 528 ARFLLPA-LNRFKLDTVAKAVGVSLDH--HHRAVDDAACTAEIFVRFVEMLKERDIFDMD 584

Query: 188 NEDRFFKEEKKTVPNIS 204
             ++       T+  + 
Sbjct: 585 TLNQQGNVSVNTIKKLP 601


>gi|302874658|ref|YP_003843291.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
 gi|302577515|gb|ADL51527.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
          Length = 1443

 Score = 83.8 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 11/212 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  S+NDRIIEIGAV++ +    +  F VF+ P  +    E  +L GI + 
Sbjct: 430 FVVFDIETTGFSSQNDRIIEIGAVKVKNGEIIDE-FSVFVNPQ-KDIPLEITELTGIDNY 487

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD  +   +  EF+DF +   +  +AHNA FD  FI       + +   P      L 
Sbjct: 488 MVKDAKTIDIVIKEFYDFVDG--SILVAHNAAFDTSFIKKNYLDNDLEFNYPIMDTIPL- 544

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF----G 184
                   ++  LN +CK  GIT    + H A+ D+   + V++K               
Sbjct: 545 CKYLYPALNKYKLNVICKYLGIT--LLNHHRAVDDAKATAMVFLKAQEELRSREIIKLSD 602

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                 +    +K  + +I LL +++     +
Sbjct: 603 LNKEYKQTQDIKKLPMNHIILLSKNQVGIKNL 634


>gi|304439997|ref|ZP_07399890.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371489|gb|EFM25102.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 1403

 Score = 83.8 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 22/247 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +    + +VFDIE+TGL   +D I EIGAV++ D    +R F  F+ P  R    + ++L
Sbjct: 387 KNYNQKFVVFDIESTGLSPASDMITEIGAVKIEDGVIVDR-FSRFVNP-MRPIPEKVVEL 444

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             IT+E + ++P    +  +F +F  +  A  +AHNA+FD  FI  ++ ++      P  
Sbjct: 445 TRITNEMVANEPPIEVVIKDFVEFIGD--ATLVAHNAEFDTAFIRRDMDKVGLKFDFPVL 502

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI- 181
               LS A       R +L+++CK+ G+       H A+ D+   ++ +IKMM  G    
Sbjct: 503 DTLYLSRAILND-LKRFNLSAICKKLGVN--LEGAHRAVNDAEATAEAFIKMMKLGGSPK 559

Query: 182 ------NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT--IQTLGK 233
                     K ++   F ++   +       ++       +      H +   I+    
Sbjct: 560 SFEEINKLFDKIDKSVLFSKDSTAIVQTQEGLKNLYKLVSAS------HMEYFNIEAKVP 613

Query: 234 NAIWDRY 240
             I+++Y
Sbjct: 614 KTIFNKY 620


>gi|126698903|ref|YP_001087800.1| DNA polymerase III PolC-type [Clostridium difficile 630]
 gi|255100324|ref|ZP_05329301.1| DNA polymerase III PolC-type [Clostridium difficile QCD-63q42]
 gi|255306262|ref|ZP_05350434.1| DNA polymerase III PolC-type [Clostridium difficile ATCC 43255]
 gi|115250340|emb|CAJ68162.1| DNA polymerase III PolC-type (PolIII) [Clostridium difficile]
          Length = 1432

 Score = 83.8 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 4/216 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  + ND+I EIGAV++ ++   +R F   + P  +  S +  +L GIT+E
Sbjct: 418 FVVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGITNE 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KDKP+   +  +F +F  +  +  +AHNA+FD GFI+ + +       +       L+
Sbjct: 476 LIKDKPTIEEVLPKFMEFVGD--SVLVAHNAEFDTGFISQKCREQGLLYNNKKVDTLMLA 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                +           +     ++H         + L+ + +++M+            N
Sbjct: 534 RVMLPNLKRHRLNVVAKELGIPLLNHHRAVDDAEATALIFNKFLQMLTEKGAKTLSDVNN 593

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
                   K +  +I+L+ ++      + K   D H
Sbjct: 594 ILGKIDYTKLSTNHITLIAKNSIGIKNLYKIISDAH 629


>gi|307945225|ref|ZP_07660561.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium
           sp. TrichSKD4]
 gi|307771098|gb|EFO30323.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium
           sp. TrichSKD4]
          Length = 470

 Score = 83.8 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 5/166 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           VFD ETTGL    D I++IGAV +++            + P GR   P + K+HGITDE 
Sbjct: 280 VFDTETTGLMPNKDEIVQIGAVRVVNGKIVPGEVIDQLVDP-GRPIPPASTKVHGITDEM 338

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K  P   +   +F      +++  +AHNA FD+ F++   +    +   P      LS 
Sbjct: 339 VKGAPDAVTSVQQFHT--FAKDSVIVAHNAPFDMAFLHRYGRESGLEWDHPIMDTVLLS- 395

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A     +  + L++LC R G+TI    +H AL D+   ++V   ++
Sbjct: 396 AVVYGTTEIHTLDALCDRLGVTIPVELRHTALGDAQATAEVLCHLL 441


>gi|254974851|ref|ZP_05271323.1| DNA polymerase III PolC-type [Clostridium difficile QCD-66c26]
 gi|255313978|ref|ZP_05355561.1| DNA polymerase III PolC-type [Clostridium difficile QCD-76w55]
 gi|255516658|ref|ZP_05384334.1| DNA polymerase III PolC-type [Clostridium difficile QCD-97b34]
 gi|255649757|ref|ZP_05396659.1| DNA polymerase III PolC-type [Clostridium difficile QCD-37x79]
 gi|260682913|ref|YP_003214198.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
 gi|260686511|ref|YP_003217644.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
 gi|260209076|emb|CBA62219.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
 gi|260212527|emb|CBE03476.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
          Length = 1432

 Score = 83.8 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 4/216 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  + ND+I EIGAV++ ++   +R F   + P  +  S +  +L GIT+E
Sbjct: 418 FVVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGITNE 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KDKP+   I  +F +F  +  +  +AHNA+FD GFI+ + +       +       L+
Sbjct: 476 LIKDKPTIEEILPKFMEFVGD--SVLVAHNAEFDTGFISQKCREQGLLYNNKKVDTLMLA 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                +           +     ++H         + L+ + +++M+            N
Sbjct: 534 RVMLPNLKRHRLNVVAKELGIPLLNHHRAVDDAEATALIFNKFLQMLTEKGAKTLSDVNN 593

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
                   K +  +I+L+ ++      + K   D H
Sbjct: 594 ILGKIDYTKLSTNHITLIAKNSIGIKNLYKIISDAH 629


>gi|325126001|gb|ADY85331.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 1445

 Score = 83.8 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 13/208 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+   +      ++  +  
Sbjct: 426 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH---HPLSETTINLTSIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +               N     HN +FDVGF++A L+R     +    +     
Sbjct: 482 DEMVQAADDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEISQPVVDTLEV 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   SR+ L+SLC++Y + + H   H A  D+     +  K++         F   
Sbjct: 542 SRLLHPEQSRHTLDSLCRKYNVPLEH--HHRANQDAEATGYLMFKLLD-------AFNDK 592

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                  +     N    KR +P    +
Sbjct: 593 YQEDDLGKMNDYSNGEGYKRARPTHITV 620


>gi|237742507|ref|ZP_04572988.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
 gi|229430155|gb|EEO40367.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
          Length = 1449

 Score = 83.8 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 6/191 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++  ITDE
Sbjct: 422 FVIFDIETTGLNSHTNEIIEIGAVKIKSGRIVDR-YSQLINP-GRPIPYHITEITSITDE 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++P  + +  +F DF  +  A  +AHNA FD+GFI  ++++        S I     
Sbjct: 480 QVANEPKINEVIGKFVDFVGD--AVLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQM 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L  L K  G+       H A+ DS   ++++I  +    +    +  +
Sbjct: 538 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGLEYMKD 595

Query: 189 EDRFFKEEKKT 199
            +  F+   K 
Sbjct: 596 INIGFEVNVKK 606


>gi|325685948|gb|EGD28011.1| DNA polymerase III PolC [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 1402

 Score = 83.8 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 82/208 (39%), Gaps = 13/208 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+   +      ++  +  
Sbjct: 383 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH---HPLSETTINLTSIT 438

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +               N     HN +FDVGF+NA L+R     +    +     
Sbjct: 439 DEMVQAADDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVNAALKRCGYPEISQPVVDTLEV 498

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   SR+ L+SLC++Y + + H   H A  D+     +  K++         F   
Sbjct: 499 SRLLHPEQSRHTLDSLCRKYNVALEH--HHRANQDAEATGYLMFKLLD-------AFNDK 549

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                  +     N    KR +P    +
Sbjct: 550 YQEDDLGKMNDYSNGEGYKRARPTHITV 577


>gi|313124033|ref|YP_004034292.1| DNA polymerase iii, alpha subunit (gram-positive type) (polc)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280596|gb|ADQ61315.1| DNA polymerase III, alpha subunit (Gram-positive type) (PolC)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 1445

 Score = 83.8 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 82/208 (39%), Gaps = 13/208 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+   +      ++  +  
Sbjct: 426 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH---HPLSETTINLTSIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +               N     HN +FDVGF+NA L+R     +    +     
Sbjct: 482 DEMVQAADDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVNAALKRCGYPEISQPVVDTLEV 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   SR+ L+SLC++Y + + H   H A  D+     +  K++         F   
Sbjct: 542 SRLLHPEQSRHTLDSLCRKYNVALEH--HHRANQDAEATGYLMFKLLD-------AFNDK 592

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                  +     N    KR +P    +
Sbjct: 593 YQEDDLGKMNDYSNGEGYKRARPTHITV 620


>gi|255655317|ref|ZP_05400726.1| DNA polymerase III PolC-type [Clostridium difficile QCD-23m63]
          Length = 1432

 Score = 83.8 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 4/216 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  + ND+I EIGAV++ ++   +R F   + P  +  S +  +L GIT+E
Sbjct: 418 FVVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGITNE 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KDKP+   +  +F +F  +  +  +AHNA+FD GFI+ + +       +       L+
Sbjct: 476 LIKDKPTIEEVLPKFMEFVGD--SVLVAHNAEFDTGFISQKCREQGLLYNNKKVDTLMLA 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                +           +     ++H         + L+ + +++M+            N
Sbjct: 534 RVMLPNLKRHRLNVVAKELGIPLLNHHRAVDDAEATALIFNKFLQMLTEKGAKTLSDVNN 593

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
                   K +  +I+L+ ++      + K   D H
Sbjct: 594 ILGKIDYTKLSTNHITLIAKNSVGIKNLYKIISDAH 629


>gi|296451302|ref|ZP_06893042.1| DNA polymerase III PolC [Clostridium difficile NAP08]
 gi|296880346|ref|ZP_06904309.1| DNA polymerase III PolC [Clostridium difficile NAP07]
 gi|296259908|gb|EFH06763.1| DNA polymerase III PolC [Clostridium difficile NAP08]
 gi|296428587|gb|EFH14471.1| DNA polymerase III PolC [Clostridium difficile NAP07]
          Length = 1432

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 4/216 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  + ND+I EIGAV++ ++   +R F   + P  +  S +  +L GIT+E
Sbjct: 418 FVVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGITNE 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KDKP+   +  +F +F  +  +  +AHNA+FD GFI+ + +       +       L+
Sbjct: 476 LIKDKPTIEEVLPKFMEFVGD--SVLVAHNAEFDTGFISQKCREQGLLYNNKKVDTLMLA 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                +           +     ++H         + L+ + +++M+            N
Sbjct: 534 RVMLPNLKRHRLNVVAKELGIPLLNHHRAVDDAEATALIFNKFLQMLTEKGAKTLSDVNN 593

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
                   K +  +I+L+ ++      + K   D H
Sbjct: 594 ILGKIDYTKLSTNHITLIAKNSVGIKNLYKIISDAH 629


>gi|160940984|ref|ZP_02088323.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436074|gb|EDP13841.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1565

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 83/209 (39%), Gaps = 4/209 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG   K ++IIEIGAV+++D   T++ F  F+ P+      +  KL GI D 
Sbjct: 542 FVVFDIETTGFSPKKNKIIEIGAVKVVDGRITDK-FSTFVNPD-VPIPFDIEKLTGINDS 599

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P    I  +F +F  +  A  +AHNA FDVGFI    +++             ++
Sbjct: 600 MVLPYPKIDVILPQFLEFVGD--AVLVAHNASFDVGFIGHFAEKLELPFDPTVLDTVAIA 657

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                + +                +H         +  +   ++KM+      +      
Sbjct: 658 RLLLPNLNRFKLDTVAKALNISLQNHHRAVDDAGATAEIFAAFVKMLRDRDVNDLNQLNA 717

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
                 +  + +P   ++   K    R+ 
Sbjct: 718 LSTMDTDTIRKLPTHHVIILAKNDIGRVN 746


>gi|153854163|ref|ZP_01995471.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
 gi|149753212|gb|EDM63143.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
          Length = 1513

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 86/210 (40%), Gaps = 10/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG     D+IIEIGAV++     T++ F  F+ P       +  +L  ITD+
Sbjct: 470 YVVFDLETTGFSPIKDKIIEIGAVKVEHGEITDK-FSTFVNPK-VPIPFQITQLTSITDQ 527

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P   ++  +F +F  +  A  +AHNA FDV FI    +  +  P   S     ++
Sbjct: 528 MVIGAPDIETVLPQFLEFIGD--AALVAHNASFDVSFIEQNCRYQDIQPDFTSVDTVAMA 585

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  S           +   IS  + H A+ D+   +++++K +            +
Sbjct: 586 RILLPTLSKYKLNVVANALH---ISLENHHRAVDDAGATAEIFVKFVEMLKDRGI---YD 639

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
             +  +  +     +  L     +   + +
Sbjct: 640 LAKLNQFGENNADAVRKLPSYHVIILALNE 669


>gi|218283081|ref|ZP_03489176.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
 gi|218216150|gb|EEC89688.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
          Length = 1446

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 19/237 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE G V++ +  +  R  Q+F+ P  R        L  IT  
Sbjct: 397 FVVFDLETTGLSNTRDEIIEFGGVKIKNREEVGR-LQMFINPK-RTIPAHISNLTHITQN 454

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTL 127
            +           E  +F  +  +  +AHNA FDVGF+NA  ++  +D L         L
Sbjct: 455 DVDCAKPIEDALDELLEFIGD--SILVAHNATFDVGFMNAACRKTGRDELTNPVIDTLPL 512

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           S A       R +L S+C+ Y ++      H A  D+ +LS V   MM   +Q+      
Sbjct: 513 SYAMLPDEQKRFNLGSVCRHYRVSYDGEGAHRADYDADVLSQVMYNMM---NQLGHDATL 569

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPL---FTRITKEELDE--------HDKTIQTLGK 233
           +     +   +   +    +R++P         K+ L E        H + + ++GK
Sbjct: 570 DTLMDMEGGCEKYSSKKPYERNRPYHMTVFAKNKDGLKELFELITLSHTQYLVSMGK 626


>gi|325479569|gb|EGC82665.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 1369

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 7/166 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL    DRI EIGAV++ +   T   +   + P     S +   + GIT+E
Sbjct: 353 FVVFDLETTGLSKYKDRITEIGAVKVENGKIT-EEYNQLVNPE-MVISEKITDITGITNE 410

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P    +  +F  F  +  +  +  N  FDVGFI     R+  +          ++
Sbjct: 411 MVEDCPKIDEVMKDFLKFCGD--SILVGQNTDFDVGFIKENCFRMEIEFNPLYLDTLPMA 468

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            A        +      K   + I   + H A  D+   + ++IKM
Sbjct: 469 RALFSDMKKFSLDKIARK---LEIPAFNHHRASDDARATAQIFIKM 511


>gi|83590002|ref|YP_430011.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC
           39073]
 gi|83572916|gb|ABC19468.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC
           39073]
          Length = 921

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 5/167 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGLD   DRIIEI AV L   + T R FQ  + P GR   P   +L GI+D 
Sbjct: 6   YVVLDVETTGLDPARDRIIEIAAVRLEGGNIT-RQFQTLVNP-GRPIPPAIERLTGISDA 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P    +     D F +  A  + HN  FD+ F+N  L      PL  +  +  + 
Sbjct: 64  MVREAPPLPEVLPGLLDLFRD--AIPVGHNGTFDLAFLNQALGHGWHSPLLDTLALSRIL 121

Query: 129 IARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIKM 174
                          L  +  G   +             L    +++
Sbjct: 122 FPCLASHRLDYMSKYLTLEATGHHRALDDVLTTARLLENLWQATLEL 168


>gi|104774216|ref|YP_619196.1| DNA polymerase III, alpha subunit ( type) (PolC) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423297|emb|CAI98138.1| DNA polymerase III, alpha subunit (gram-positive type) (PolC)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 1411

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 13/208 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+   +      ++  +  
Sbjct: 392 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH---HPLSETTINLTSIT 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +               N     HN +FDVGF++A L+R     +    +     
Sbjct: 448 DEMVQAADDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEISQPVVDTLEV 507

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   SR+ L+SLC++Y + + H   H A  D+     +  K++         F   
Sbjct: 508 SRLLHPEQSRHTLDSLCRKYNVPLEH--HHRANQDAEATGYLMFKLLD-------AFNDK 558

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                  +     N    KR +P    +
Sbjct: 559 YQEDDLGKMNDYSNGEGYKRARPTHITV 586


>gi|262202943|ref|YP_003274151.1| DNA polymerase III subunit epsilon [Gordonia bronchialis DSM 43247]
 gi|262086290|gb|ACY22258.1| DNA polymerase III, epsilon subunit [Gordonia bronchialis DSM
           43247]
          Length = 595

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 4/168 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG D   DRI EIGAV++         F   + P  R   P+ + L GIT   
Sbjct: 39  VVVDLETTGSDPAGDRITEIGAVKIRGGEVLGE-FATLVDPE-RSIPPQIVTLTGITHAM 96

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P    +   F +    + +  +AHNA+FD+GF+    QR++ D   P  +      
Sbjct: 97  VSAAPRIEEVLPAFIE--FARGSILVAHNARFDMGFLRRNAQRLHLDFPFPLSLCTVTMA 154

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            R  H      +          +S R  H AL D+    +V+  ++  
Sbjct: 155 RRILHREEAPTVRLSALADLFDVSVRPTHRALDDARATVEVFHHLLER 202


>gi|329724322|gb|EGG60834.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU144]
          Length = 1438

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVN---- 591

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 592 ---NHLEINKKLTNEDAYKRARP 611


>gi|253731883|ref|ZP_04866048.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724293|gb|EES93022.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|320144365|gb|EFW36131.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 1442

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 484 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 594

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 595 --LNHNEINKKLSNEDAYKRARP 615


>gi|73919252|sp|Q5HPS7|DPO3_STAEQ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|329736245|gb|EGG72517.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU028]
 gi|329736547|gb|EGG72813.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU045]
          Length = 1438

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVN---- 591

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 592 ---NHLEINKKLTNEDAYKRARP 611


>gi|329733603|gb|EGG69931.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 1438

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611


>gi|323441043|gb|EGA98750.1| DNA polymerase III PolC [Staphylococcus aureus O11]
          Length = 1436

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 478 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 588

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 589 --LNHNEINKKLSNEDAYKRARP 609


>gi|253733498|ref|ZP_04867663.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728552|gb|EES97281.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 1438

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611


>gi|57866746|ref|YP_188413.1| DNA polymerase III PolC [Staphylococcus epidermidis RP62A]
 gi|293366772|ref|ZP_06613448.1| DNA polymerase III PolC [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|57637404|gb|AAW54192.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis RP62A]
 gi|291319073|gb|EFE59443.1| DNA polymerase III PolC [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 1436

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 478 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVN---- 589

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 590 ---NHLEINKKLTNEDAYKRARP 609


>gi|57651834|ref|YP_186140.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus COL]
 gi|87161645|ref|YP_493854.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194974|ref|YP_499774.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|161509430|ref|YP_001575089.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294848260|ref|ZP_06789007.1| DNA polymerase III [Staphylococcus aureus A9754]
 gi|56749834|sp|P68852|DPO3_STAAW RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|110808208|sp|Q2G1Z8|DPO3_STAA8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123486180|sp|Q2FHH4|DPO3_STAA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|12082347|dbj|BAB20885.1| PolC [Staphylococcus aureus]
 gi|57286020|gb|AAW38114.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127619|gb|ABD22133.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202532|gb|ABD30342.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|160368239|gb|ABX29210.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|294825060|gb|EFG41482.1| DNA polymerase III [Staphylococcus aureus A9754]
          Length = 1436

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 478 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 588

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 589 --LNHNEINKKLSNEDAYKRARP 609


>gi|283470479|emb|CAQ49690.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 1438

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611


>gi|27467858|ref|NP_764495.1| DNA polymerase III PolC [Staphylococcus epidermidis ATCC 12228]
 gi|32469713|sp|Q8CPG6|DPO3_STAES RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|27315403|gb|AAO04537.1|AE016747_34 DNA polymerase III, alpha chain PolC-type [Staphylococcus
           epidermidis ATCC 12228]
          Length = 1442

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 484 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVN---- 595

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 596 ---NHLEINKKLTNEDAYKRARP 615


>gi|282918963|ref|ZP_06326698.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C427]
 gi|282316773|gb|EFB47147.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C427]
          Length = 1438

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611


>gi|258423895|ref|ZP_05686780.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9635]
 gi|257845924|gb|EEV69953.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9635]
          Length = 1438

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611


>gi|238924126|ref|YP_002937642.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
 gi|238875801|gb|ACR75508.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
          Length = 1510

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 78/197 (39%), Gaps = 7/197 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFDIETTG   + ++IIEIGAV+++     +R +  F+ P          +L  I D
Sbjct: 479 KYVVFDIETTGFSPEKNKIIEIGAVKVIGGEIVDR-YSTFINPE-VPIPFRIEELTSIRD 536

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +   P+   I  +F +F  +     +AHNA FD+ FI      +  +          L
Sbjct: 537 DMVITSPTVDVILPQFMEFCKD--CIMVAHNADFDMSFIKRNCALLGMECNPTIVDTVAL 594

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +       +             + IS    H A+ D+   +++++K +            
Sbjct: 595 ARVLLPQLNRFKLDTVAKA---LNISLDHHHRAVDDAACTAEIFVKFIEKLKDRGISSLD 651

Query: 188 NEDRFFKEEKKTVPNIS 204
             +   K   + +  + 
Sbjct: 652 EVNALAKSSVEMIRKMP 668


>gi|320140919|gb|EFW32766.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 1436

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 478 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 588

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 589 --LNHNEINKKLSNEDAYKRARP 609


>gi|282876304|ref|ZP_06285171.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis SK135]
 gi|281295329|gb|EFA87856.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis SK135]
          Length = 1438

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVN---- 591

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 592 ---NHLEINKKLTNEDAYKRARP 611


>gi|269202881|ref|YP_003282150.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|295406201|ref|ZP_06816008.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297244429|ref|ZP_06928312.1| DNA polymerase III [Staphylococcus aureus A8796]
 gi|262075171|gb|ACY11144.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|294968789|gb|EFG44811.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297178459|gb|EFH37705.1| DNA polymerase III [Staphylococcus aureus A8796]
          Length = 1436

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 478 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 588

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 589 --LNHNEINKKLSNEDAYKRARP 609


>gi|21282876|ref|NP_645964.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MW2]
 gi|49486103|ref|YP_043324.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|151221386|ref|YP_001332208.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|221142498|ref|ZP_03566991.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258452563|ref|ZP_05700569.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5948]
 gi|262048156|ref|ZP_06021043.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           D30]
 gi|262051326|ref|ZP_06023549.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           930918-3]
 gi|282920508|ref|ZP_06328229.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9765]
 gi|284024257|ref|ZP_06378655.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus 132]
 gi|297208090|ref|ZP_06924521.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300912171|ref|ZP_07129614.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381172|ref|ZP_07363825.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|56748669|sp|Q6G9U9|DPO3_STAAS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|73919251|sp|Q5HGG7|DPO3_STAAC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|172049022|sp|A6QGG4|DPO3_STAAE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21204315|dbj|BAB95012.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244546|emb|CAG42975.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|150374186|dbj|BAF67446.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|257859781|gb|EEV82623.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5948]
 gi|259160701|gb|EEW45722.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           930918-3]
 gi|259163722|gb|EEW48277.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           D30]
 gi|282594170|gb|EFB99157.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9765]
 gi|296887333|gb|EFH26235.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300886417|gb|EFK81619.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|302751087|gb|ADL65264.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340155|gb|EFM06096.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315198506|gb|EFU28835.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS01]
 gi|329313934|gb|AEB88347.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus T0131]
 gi|329727848|gb|EGG64299.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 1438

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611


>gi|298694556|gb|ADI97778.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 1436

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 478 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 588

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 589 --LNHNEINKKLSNEDAYKRARP 609


>gi|295427751|ref|ZP_06820383.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128109|gb|EFG57743.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 1436

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 478 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 588

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 589 --LNHNEINKKLSNEDAYKRARP 609


>gi|282916524|ref|ZP_06324282.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770328|ref|ZP_06343220.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           H19]
 gi|282319011|gb|EFB49363.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460475|gb|EFC07565.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           H19]
          Length = 1438

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611


>gi|269940755|emb|CBI49137.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 1438

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611


>gi|251810695|ref|ZP_04825168.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805855|gb|EES58512.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
          Length = 1442

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 484 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVN---- 595

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 596 ---NHLEINKKLTNEDAYKRARP 615


>gi|257425318|ref|ZP_05601743.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427979|ref|ZP_05604377.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430612|ref|ZP_05606994.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433372|ref|ZP_05609730.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436214|ref|ZP_05612261.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M876]
 gi|282910836|ref|ZP_06318639.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914041|ref|ZP_06321828.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924086|ref|ZP_06331762.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C101]
 gi|293501073|ref|ZP_06666924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510035|ref|ZP_06668743.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M809]
 gi|293526621|ref|ZP_06671306.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257271775|gb|EEV03913.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274820|gb|EEV06307.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278740|gb|EEV09359.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281465|gb|EEV11602.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284496|gb|EEV14616.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M876]
 gi|282314058|gb|EFB44450.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C101]
 gi|282322109|gb|EFB52433.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325441|gb|EFB55750.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|290920693|gb|EFD97756.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291096078|gb|EFE26339.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466979|gb|EFF09497.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M809]
 gi|312438356|gb|ADQ77427.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH60]
          Length = 1438

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611


>gi|49483427|ref|YP_040651.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282903819|ref|ZP_06311707.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905582|ref|ZP_06313437.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908557|ref|ZP_06316387.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283958007|ref|ZP_06375458.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|297591291|ref|ZP_06949929.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|56748683|sp|Q6GHH1|DPO3_STAAR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|49241556|emb|CAG40242.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282327619|gb|EFB57902.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330874|gb|EFB60388.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595437|gb|EFC00401.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C160]
 gi|283790156|gb|EFC28973.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|297576177|gb|EFH94893.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|315194152|gb|EFU24545.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS00]
          Length = 1438

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611


>gi|110808209|sp|P0C1P9|DPO3_STAAU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1483182|dbj|BAA13160.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1435

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 478 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 588

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 589 --LNHNEINKKLSNEDAYKRARP 609


>gi|15924254|ref|NP_371788.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926847|ref|NP_374380.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus N315]
 gi|148267754|ref|YP_001246697.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH9]
 gi|150393813|ref|YP_001316488.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH1]
 gi|156979585|ref|YP_001441844.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315620|ref|ZP_04838833.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006051|ref|ZP_05144652.2| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795680|ref|ZP_05644659.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|258416083|ref|ZP_05682351.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|258421666|ref|ZP_05684590.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
           A9719]
 gi|258434822|ref|ZP_05688896.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A9299]
 gi|258444602|ref|ZP_05692931.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A8115]
 gi|258447565|ref|ZP_05695709.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6300]
 gi|258449407|ref|ZP_05697510.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6224]
 gi|258454786|ref|ZP_05702750.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5937]
 gi|282892752|ref|ZP_06300987.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A8117]
 gi|282927606|ref|ZP_06335222.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A10102]
 gi|296274822|ref|ZP_06857329.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MR1]
 gi|54036992|sp|P63982|DPO3_STAAN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040953|sp|P63981|DPO3_STAAM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217451|sp|A7X1P4|DPO3_STAA1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13701064|dbj|BAB42359.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247034|dbj|BAB57426.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147740823|gb|ABQ49121.1| DNA polymerase III catalytic subunit, PolC type [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946265|gb|ABR52201.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721720|dbj|BAF78137.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257789652|gb|EEV27992.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|257839231|gb|EEV63707.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|257842352|gb|EEV66777.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
           A9719]
 gi|257849183|gb|EEV73165.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A9299]
 gi|257850095|gb|EEV74048.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A8115]
 gi|257853756|gb|EEV76715.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6300]
 gi|257857395|gb|EEV80293.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6224]
 gi|257863169|gb|EEV85933.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5937]
 gi|282590609|gb|EFB95686.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A10102]
 gi|282764749|gb|EFC04874.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A8117]
 gi|285816946|gb|ADC37433.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981]
 gi|312829658|emb|CBX34500.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315131058|gb|EFT87042.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727084|gb|EGG63540.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21172]
          Length = 1438

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611


>gi|332982461|ref|YP_004463902.1| DNA polymerase III catalytic subunit, PolC type [Mahella
           australiensis 50-1 BON]
 gi|332700139|gb|AEE97080.1| DNA polymerase III catalytic subunit, PolC type [Mahella
           australiensis 50-1 BON]
          Length = 1427

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 82/201 (40%), Gaps = 5/201 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTGL++  D+IIEIGAV + D       F  F+ P+     P  + L GITD+ 
Sbjct: 416 VVLDIETTGLNAGTDKIIEIGAVRIKDGKY-KDEFSSFINPH-VPIPPSIVNLTGITDDM 473

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-LS 128
           + + P    +   F +     +A  +AHNA+FD+GFI    Q+ N    +P     T   
Sbjct: 474 VSNAPDEGDVLQRFME--FAGDAVLVAHNAQFDMGFIRQHGQKYNLKFANPVLDTLTLAR 531

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
              +     + D  +      +   HR+   A   + +L     K+   G Q        
Sbjct: 532 QLFKGLKHYKLDTLAHHLHIDMDNHHRAVDDARTAAEILFRCMDKLSEMGCQFLSDLNRV 591

Query: 189 EDRFFKEEKKTVPNISLLKRD 209
                    +    + L+K  
Sbjct: 592 FGSSISNNSELYHAVILVKNQ 612


>gi|302332870|gb|ADL23063.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 1438

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611


>gi|242242547|ref|ZP_04796992.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
 gi|242233974|gb|EES36286.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
          Length = 1442

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 484 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVN---- 595

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 596 ---NHLEINKKLTNEDAYKRARP 615


>gi|237739760|ref|ZP_04570241.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
 gi|229423368|gb|EEO38415.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
          Length = 1449

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 6/191 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL+S  ++IIEIGAV++      +R +   + P G        ++  IT+E
Sbjct: 422 FVVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDR-YSQLINP-GISIPYHITEITSITNE 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++P    +  +F DF  +  A  +AHNA FD+GFI  +++      L+ S I     
Sbjct: 480 QVANQPKIDEVIGKFVDFIGD--AVLVAHNAPFDMGFIKRDIKEYLNIDLENSVIDTLQM 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L  L K  G+       H A+ DS   ++++I  +    +    +  +
Sbjct: 538 ARDLFPDFKKYGLGDLNKSLGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGIEYLKD 595

Query: 189 EDRFFKEEKKT 199
            ++ F+   K 
Sbjct: 596 INKGFEVNVKK 606


>gi|319401446|gb|EFV89656.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis FRI909]
          Length = 1438

 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVN---- 591

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 592 ---NHLEINKKLTNEDAYKRARP 611


>gi|148255092|ref|YP_001239677.1| hypothetical protein BBta_3691 [Bradyrhizobium sp. BTAi1]
 gi|146407265|gb|ABQ35771.1| hypothetical protein BBta_3691 [Bradyrhizobium sp. BTAi1]
          Length = 720

 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 2/125 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG  S  DRI EIGAV++ ++      +   + P  R    + ++L GIT++
Sbjct: 546 YVVVDIETTGSWSSGDRITEIGAVKVRNHQIV-EEWHSLINPQ-RPIPAKIVELTGITNQ 603

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P F  I   F  F  +        N  +       E              +    
Sbjct: 604 MVRDAPFFHDIADSFIAFMGDGIFVAHNVNFDYGFLSYEYERLERRFRFPKLCTCVGMRR 663

Query: 129 IARRK 133
                
Sbjct: 664 RYPGH 668


>gi|262066554|ref|ZP_06026166.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
 gi|291379736|gb|EFE87254.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
          Length = 1449

 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 6/191 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL+S  ++IIEIGAV++      +R +   + P G        ++  IT+E
Sbjct: 422 FVVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDR-YSQLINP-GISIPYHITEITSITNE 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++P    +  +F +F  +  A  +AHNA FD+GFI  +++      L+ S I     
Sbjct: 480 QVANQPKIDEVIGKFVEFIGD--AVLVAHNAPFDMGFIKRDIKEYLNIDLESSVIDTLQM 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L  L K  G+       H A+ DS   ++++I  +    +    +  +
Sbjct: 538 ARDLFPDFKKYGLGDLNKSLGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGIEYLKD 595

Query: 189 EDRFFKEEKKT 199
            ++ F+   K 
Sbjct: 596 INKGFEVNVKK 606


>gi|642270|emb|CAA88043.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1415

 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 478 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 588

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 589 --LNHNEINKKLSNEDAYKRARP 609


>gi|295094742|emb|CBK83833.1| DNA polymerase III catalytic subunit, PolC type [Coprococcus sp.
           ART55/1]
          Length = 1603

 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 7/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL  K+++IIEIGAV++ D      TF  F+ P G     +  +L  I D+
Sbjct: 547 YVVFDIETTGLSKKHNKIIEIGAVKVKDGEVV-DTFSEFINP-GVPIPYQIEQLTSINDD 604

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P F  I   F +F  +     +AHNA FD GF+    + +     +      TLS
Sbjct: 605 MVKDAPMFDVIVPRFVEFCGD--DIVVAHNASFDTGFVRMNAEELGLKFDNTVLDTMTLS 662

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                            +   + + +   H A+ D+   + V+ K++    + +     +
Sbjct: 663 HILLPELGKFTLDRVCKE---LKVVNAHHHRAIDDAEATAKVFFKLLDMLKERDVKTMDD 719

Query: 189 EDRFFKEEKKTVPNIS 204
            +         +    
Sbjct: 720 LNVLGSTSPDAIKKDK 735


>gi|291544892|emb|CBL18001.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp.
           18P13]
          Length = 1444

 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 83/168 (49%), Gaps = 6/168 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+FD+ETTGL ++ DR+ EIGA+++ +  +   +F  ++ P  R   PE   L GI +  
Sbjct: 429 IIFDVETTGLSAERDRLTEIGAIKVKN-MRVADSFHTYVNPE-RPIPPEITDLTGIHEGM 486

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P  S    EF+ F   ++   +AHNA+FD  FI+                ID+L +
Sbjct: 487 VAEAPKASQALKEFFAF-CGEDPVLVAHNARFDTSFID--AAAGRAGQRYAYAYIDSLVL 543

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +   P       ++  ++ + +     H A  D+ +L+ +Y++++  
Sbjct: 544 CQAMLPDLAKHKLNVVAKH-LKLGKFDHHRADNDAMMLAKIYLELVGR 590


>gi|300812566|ref|ZP_07092983.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496439|gb|EFK31544.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 1402

 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 13/208 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+   +      ++  +  
Sbjct: 383 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH---HPLSETTINLTSIT 438

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +               N     HN +FDVGF++A L+R     +    +     
Sbjct: 439 DEMVQAADDEAVVIKEFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEISQPVVDTLEV 498

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   SR+ L+SLC++Y + + H   H A  D+     +  K++         F   
Sbjct: 499 SRLLHPEQSRHTLDSLCRKYNVALEH--HHRANQDAEATGYLMFKLLD-------AFNDK 549

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                  +     N    KR +P    +
Sbjct: 550 YQEDDLGKMNDYSNGEGYKRARPTHITV 577


>gi|34762810|ref|ZP_00143796.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887512|gb|EAA24596.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 1216

 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 6/191 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++  ITDE
Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKIKSGRIMDR-YSQLINP-GRPIPYHITEITSITDE 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++P    +  +F DF  +  A  +AHNA FD+GFI  ++++        S I     
Sbjct: 480 QVANEPKIDKVIGKFVDFVGD--AVLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQM 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L  L K  G+       H A+ DS   ++++I  +    +    +  +
Sbjct: 538 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGLEYMKD 595

Query: 189 EDRFFKEEKKT 199
            +  F+   + 
Sbjct: 596 INTGFEVNVRK 606


>gi|291484662|dbj|BAI85737.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. natto BEST195]
          Length = 931

 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 101/238 (42%), Gaps = 28/238 (11%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN +       +L 
Sbjct: 2   NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPAFIEQLT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+++ ++++  F ++  E +   +       AHN  FD+GF+  EL       L    +
Sbjct: 60  GISNQMVENEQPFEAVAEEVFQLLDGAYFV--AHNIHFDLGFVKYEL-HKAGFQLPDCEV 116

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN- 182
           +DT+ ++R   P       +      + + H   H A  D+ +   ++++++    Q+  
Sbjct: 117 LDTVELSRIVFPGFEGYKLTELSEE-LQLRHDQPHRADSDAEVTGLIFLEILEKLRQLPY 175

Query: 183 --------------------FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
                                    NE+R  +    T  +   ++  + +  RI ++E
Sbjct: 176 PTLKQLRRLSQHFISDLTHLLDMFINENRHTEIPGYTRFSSFSVREPEAIDVRINEDE 233


>gi|224476387|ref|YP_002633993.1| DNA polymerase III PolC [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420994|emb|CAL27808.1| homolog of DNA polymerase III, alpha subunit [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 1437

 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 13/208 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  P+ R  S     L  I+D+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHDGEIIDK-FERFSNPHER-LSDTIKNLTHISDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R          I     
Sbjct: 480 MLVDAPEIDDVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERAGLGNYTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEFGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMLKQVEELGV----- 590

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                K+  +++ N    KR +P    I
Sbjct: 591 --TNHKDINQSLSNEDAYKRARPSHITI 616


>gi|223044235|ref|ZP_03614272.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus capitis SK14]
 gi|222442385|gb|EEE48493.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus capitis SK14]
          Length = 1438

 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 100/203 (49%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+   +++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMIQQMTELGV----- 590

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 591 --HNHNEINKKLTNEDAYKRARP 611


>gi|288556130|ref|YP_003428065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus pseudofirmus OF4]
 gi|288547290|gb|ADC51173.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus pseudofirmus OF4]
          Length = 940

 Score = 83.1 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 7/177 (3%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D+ETTG   +K DRII+IGAV + +     R F  F+ P   +  P   +L GI 
Sbjct: 4   RFIVVDVETTGHSVAKGDRIIQIGAVVIENGEIIER-FASFVNPE-VEIPPFIEELTGIN 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++  P+F  +  E    F        AHN  FD+ F+  + + I +           
Sbjct: 62  QAMVEHAPTFKELAVELLPLFENVGFV--AHNVPFDLSFLKNQFELIGEKFPKMKCYDTV 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                         L  L    G++      H A  D+ + +++++ ++     +  
Sbjct: 120 ELSRMLLPKEESYKLGHLAFSLGLSHDRP--HQADSDAEVTAEIFLYLLNKLKGLPL 174


>gi|323443912|gb|EGB01523.1| DNA polymerase III PolC [Staphylococcus aureus O46]
          Length = 1436

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 478 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMQELGV----- 588

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 589 --LNHNEINKKLSNEDAYKRARP 609


>gi|212639526|ref|YP_002316046.1| DNA polymerase III PolC [Anoxybacillus flavithermus WK1]
 gi|212561006|gb|ACJ34061.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Anoxybacillus flavithermus WK1]
          Length = 1430

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 93/197 (47%), Gaps = 6/197 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++ +    +R F+ F  P+    S   ++L  ITD+
Sbjct: 415 FVVFDVETTGLSAVYDTIIELAAVKVKNGEIIDR-FESFANPH-HPLSATTIELTKITDD 472

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD P    +  +F+ + ++     +AHNA FD+GF+NA  ++IN+  +    I     
Sbjct: 473 MLKDAPDVEEVLEKFYHWIDD--CVLVAHNATFDIGFLNAGFKKINRGKVTNPVIDTLEL 530

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK++ I       H A+ D+     + I ++    +    +   
Sbjct: 531 ARYLYPELKNHRLNTLCKKFNIE--LTQHHRAIYDAEATGYLLIHLLKELDEKGIQYMDQ 588

Query: 189 EDRFFKEEKKTVPNISL 205
            +   KE+     +   
Sbjct: 589 LNEASKEQGAFQRSRPF 605


>gi|116334989|ref|YP_802484.1| DNA polymerase III epsilon subunit [Candidatus Carsonella ruddii
           PV]
 gi|116235270|dbj|BAF35118.1| DNA polymerase III epsilon subunit [Candidatus Carsonella ruddii
           PV]
          Length = 181

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 78/168 (46%), Gaps = 3/168 (1%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I  D+ETTGL  +  DRIIEIG VE+++   T R F  +  P  +     A  +HGI 
Sbjct: 3   RIIFLDVETTGLFVEHGDRIIEIGCVEVINGHLTGRVFHSYFNPEVKIT-QGAFNVHGIK 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+FL  KP F    +EF  F N             +       L       +     I  
Sbjct: 62  DDFLLLKPMFYEKINEFIGFINNSTIIAHNAKFDINFINKEIYLTNFKIKKIQNYANILD 121

Query: 127 LSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             +  RK +P  +N+LN LC ++ +  + +  HGAL D+ LL+ + IK
Sbjct: 122 SLLLFRKLYPRKKNNLNDLCLKFNLIKNKKRIHGALNDAFLLAVLIIK 169


>gi|160934103|ref|ZP_02081490.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753]
 gi|156866776|gb|EDO60148.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753]
          Length = 1451

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FD+ETTGL + NDRI EIGAV + +   T   F  F+ P  R    +  +L GI D 
Sbjct: 434 YISFDLETTGLSAANDRITEIGAVRIHNGEIT-DVFNTFVNPE-RPIPAKITELTGINDS 491

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P        F +F   +    +AHNA FD  FI A   R N D  +       + 
Sbjct: 492 MVIDAPKEKEAVEAFLEF-CGKEPVLLAHNAPFDTSFIQAVAARHNLDFSNTYLDTVPMC 550

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            A      +            + ++  + H A  D+ +L+++++ ++    +
Sbjct: 551 RAMLPGIKNHKLDTVA---KHLKLAPFNHHRASDDAMVLANIFLVLLQRLQE 599


>gi|187935470|ref|YP_001885466.1| DNA polymerase III PolC [Clostridium botulinum B str. Eklund 17B]
 gi|187723623|gb|ACD24844.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum B str. Eklund 17B]
          Length = 1452

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 86/215 (40%), Gaps = 10/215 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG    ND+IIEIGAV++      +  F  F+ P  R    +  +L  I + 
Sbjct: 439 FVVFDLETTGFSPVNDKIIEIGAVKIKSGEIIDE-FSCFVNPQ-RDIPYKITQLTSIDNN 496

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD     +I  +F +F  +     +AHNA FD GFI    +      +     I    
Sbjct: 497 MVKDADVIENILPKFMEFCED--TVIVAHNAAFDTGFIK---KNCRDLNIRFDIPILDTV 551

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
              R        +        + IS  + H A+ D+   +D+   ++    +I   F+ N
Sbjct: 552 TLCRFLYPELKKVKLNIVAKFLGISLENHHRAVDDAKATADI---LLKSFEKIEEDFEIN 608

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           + +   +   +  +I        +    T+  L  
Sbjct: 609 DLKSLNDLFLSKVDIRKQPTYHIIILAKTQAGLKN 643


>gi|315111548|ref|YP_813210.2| DNA polymerase III, alpha subunit ( type) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1445

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 13/208 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+   +      ++  +  
Sbjct: 426 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH---HPLSETTINLTSIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +               N     HN +FDVGF++A L+R     +    +     
Sbjct: 482 DEMVQAADDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEISQPVVDTLEV 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   SR+ L+SLC++Y + + H   H A  D+     +  K++         F   
Sbjct: 542 SRLLHPEQSRHTLDSLCRKYNVALEH--HHRANQDAEATGYLMFKLLD-------AFNDK 592

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                  +     N    KR +P    +
Sbjct: 593 YHEDDLGKMNDYSNGEGYKRARPTHITV 620


>gi|193212860|ref|YP_001998813.1| DNA polymerase III subunit epsilon [Chlorobaculum parvum NCIB 8327]
 gi|193086337|gb|ACF11613.1| DNA polymerase III, epsilon subunit [Chlorobaculum parvum NCIB
           8327]
          Length = 208

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 58/172 (33%), Positives = 82/172 (47%), Gaps = 7/172 (4%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV L +    +R FQ  + P G + SP      GIT+E
Sbjct: 10  VVLDFETTGLSPQYGDRAIEIGAVLLENGVIVDR-FQRLMNP-GFRISPFIESYTGITNE 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK +P    + + F DF    N    AHNA FD  F++ EL+R  +           LS
Sbjct: 68  MLKVEPPCEEVMAGFSDFIAGHNIV--AHNASFDRRFLDFELKRARRAYEGDCCCSLLLS 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             R    +  + L +L    GI     S H AL D+ + + +++ M+    Q
Sbjct: 126 -RRIYQDAPNHKLQTLVNHAGIP-KVGSFHRALADAEMTAHLWLSMIDRIRQ 175


>gi|16079297|ref|NP_390121.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310156|ref|ZP_03592003.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. 168]
 gi|221314478|ref|ZP_03596283.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221319400|ref|ZP_03600694.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221323676|ref|ZP_03604970.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. SMY]
 gi|1706437|sp|P54394|DING_BACSU RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|1146243|gb|AAB38451.1| 22.4% identity with Escherichia coli DNA-damage inducible protein
           ...; putative [Bacillus subtilis subsp. subtilis str.
           168]
 gi|2634658|emb|CAB14156.1| damage inducible ATP-dependent helicase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 931

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 101/238 (42%), Gaps = 28/238 (11%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN +       +L 
Sbjct: 2   NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPAFIEQLT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+++ ++++  F ++  E +   +       AHN  FD+GF+  EL       L    +
Sbjct: 60  GISNQMVENEQPFEAVAEEVFQLLDGAYFV--AHNIHFDLGFVKYEL-HKAGFQLPDCEV 116

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN- 182
           +DT+ ++R   P       +      + + H   H A  D+ +   ++++++    Q+  
Sbjct: 117 LDTVELSRIVFPGFEGYKLTELSEE-LQLRHDQPHRADSDAEVTGLIFLEILEKLRQLPY 175

Query: 183 --------------------FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
                                    NE+R  +    T  +   ++  + +  RI ++E
Sbjct: 176 PTLKQLRRLSQHFISDLTHLLDMFINENRHTEIPGYTRFSSFSVREPEAIDVRINEDE 233


>gi|190576387|ref|YP_001974232.1| putative exonuclease [Stenotrophomonas maltophilia K279a]
 gi|190014309|emb|CAQ47956.1| putative exonuclease [Stenotrophomonas maltophilia K279a]
          Length = 169

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/99 (45%), Positives = 56/99 (56%), Gaps = 4/99 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D ETTG+  +   R+IEIGAVEL+D   T R F  +L P  RK    A ++HGI+
Sbjct: 3   RIVALDTETTGISHRLGHRVIEIGAVELIDGQLTGRQFHTYLQPQ-RKVDWGAQRVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           D  L  KP FSS  +E  +F         AHNA FDVGF
Sbjct: 62  DAMLVGKPLFSSKAAELLEFLRGSEMV--AHNATFDVGF 98


>gi|297588407|ref|ZP_06947050.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
 gi|297573780|gb|EFH92501.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
          Length = 1421

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 7/194 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL +  ++I EIGAV+++D    +  F   + P       +  +L  IT+E
Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDNQIVDE-FNQLINPE-IPIPEKITELTSITNE 459

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  EF  F  +     IAHNA FD+GFI      +  +P+         +
Sbjct: 460 MVKDMPKIEEVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCLDLRINPIRTYIDTLAFA 517

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
            A   H  +              ++  + H A  D+    +V+I M+    +    F  N
Sbjct: 518 RALEPHLKNHKLDT---LTKKYNVNLFNHHRACDDARATGEVFICMVKDLEKRGVKFDIN 574

Query: 189 EDRFFKEEKKTVPN 202
            ++   +   +   
Sbjct: 575 INKIDSDWSISKRE 588


>gi|20807845|ref|NP_623016.1| DNA polymerase III PolC [Thermoanaerobacter tengcongensis MB4]
 gi|24418364|sp|Q8RA32|DPO3_THETN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|20516408|gb|AAM24620.1| DNA polymerase III alpha subunit, the Gram-positive type
           [Thermoanaerobacter tengcongensis MB4]
          Length = 1401

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL + ND IIEIGAV++ +      TF+ F+ P     S    KL GI + 
Sbjct: 388 FVVFDIETTGLSNINDEIIEIGAVKIKNKKIV-DTFETFVNPQ-IPISSFITKLTGIDES 445

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  +F +    + A  +AHNA FDV FI ++ +++     +       LS
Sbjct: 446 MVKDAPLIEEVLPKFLE--FAKGAVLVAHNANFDVSFIKSKAKKLGLTVENTVLDTLELS 503

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
               +   +              +     H A+ D+   ++++IKM+    +I     + 
Sbjct: 504 RHLYQDLKNYKLDT---LAEFFEVKLLHHHRAVEDAKATAEIFIKMLEKLQEIGIKSVSE 560

Query: 189 EDRFFKEEKKTVPNISLL 206
            +    E +  V  + + 
Sbjct: 561 INSVLMEREVDVKKLPVY 578


>gi|254479461|ref|ZP_05092788.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034604|gb|EEB75351.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carboxydibrachium pacificum DSM 12653]
          Length = 1375

 Score = 82.7 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL + ND IIEIGAV++ +      TF+ F+ P     S    KL GI + 
Sbjct: 388 FVVFDIETTGLSNINDEIIEIGAVKIKNKKIV-DTFETFVNPQ-IPISSFITKLTGIDES 445

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  +F +    + A  +AHNA FDV FI ++ +++     +       LS
Sbjct: 446 MVKDAPLIEEVLPKFLE--FAKGAVLVAHNANFDVSFIKSKAKKLGLTVENTVLDTLELS 503

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
               +   +              +     H A+ D+   ++++IKM+    +I     + 
Sbjct: 504 RHLYQDLKNYKLDT---LAEFFEVKLLHHHRAVEDAKATAEIFIKMLEKLQEIGIKSVSE 560

Query: 189 EDRFFKEEKKTVPNISLL 206
            +    E +  V  + + 
Sbjct: 561 INSVLMEREVDVKKLPVY 578


>gi|254302688|ref|ZP_04970046.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148322880|gb|EDK88130.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 1454

 Score = 82.7 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 6/191 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++  ITDE
Sbjct: 427 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEITSITDE 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++P    +  +F DF  +  A  +AHNA FD+GFI  ++++     L  S I     
Sbjct: 485 QVANEPKIDEVIGKFIDFVGD--AVLVAHNAPFDMGFIKRDVKKYLNIDLQSSVIDTLQM 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L  L K  G+       H A+ DS   ++++I  +    +    +  +
Sbjct: 543 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLDKYKEKGLEYIKD 600

Query: 189 EDRFFKEEKKT 199
            +  F+   K 
Sbjct: 601 INVGFEVNVKK 611


>gi|323701859|ref|ZP_08113529.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
           574]
 gi|323533163|gb|EGB23032.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
           574]
          Length = 1421

 Score = 82.7 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 9/222 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG   + D IIEIGAV+ ++  + +R F   + P+ ++   E  KL GIT +
Sbjct: 409 YVVLDFETTGFSPQTDEIIEIGAVKFINGMEVDR-FGTLVKPD-KEIPFEVSKLTGITLD 466

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P      +   +F  +  A  +AHNA FD+ F+    ++  +  +    +    +
Sbjct: 467 MVKDAPDARQALAALREFIGD--AVLVAHNAAFDLSFLKVGFRKYLQVEVTNQVVDTLGT 524

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV---GGSQINFGF 185
                     + L++L K +   I   + H A+ D+     ++  ++         +   
Sbjct: 525 ARVLLPHLKNHKLDTLVKEF--KIELANHHRAVDDAAATGKLWQVLLTKAVEQGAQDLAA 582

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
            +   +    +K    ++++L +D+     + +     H K 
Sbjct: 583 LSQLGQGVSTDKLRSRHVTILVKDQVGLKNLYQLISLSHLKY 624


>gi|296333022|ref|ZP_06875479.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674874|ref|YP_003866546.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296149873|gb|EFG90765.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413118|gb|ADM38237.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 954

 Score = 82.7 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 7/181 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           I  NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN +       
Sbjct: 22  ILMNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPAFIE 79

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GI+++ ++ +  F ++  E +   +       AHN  FD+GF+  EL       L  
Sbjct: 80  QLTGISNQMVEHEQPFEAVAEEVFHLLDGAYFV--AHNIHFDLGFVKYEL-HKAGFHLPD 136

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             ++DT+ ++R   P       +      + + H   H A  D+ +   ++++++    Q
Sbjct: 137 CEVLDTVELSRIVFPGFEGYKLTELSEE-LQLRHDQPHRADSDAEVTGLIFLEILEKLRQ 195

Query: 181 I 181
           +
Sbjct: 196 L 196


>gi|317471587|ref|ZP_07930931.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
 gi|316900902|gb|EFV22872.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
          Length = 1478

 Score = 82.7 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 8/190 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG +S+ DRIIEIGAV+++    T  TF  F+ P       +  +L  ITDE
Sbjct: 452 FVVFDIETTGFNSQTDRIIEIGAVKVIAGEIT-ETFSEFINPQ-IPIPFKITQLTTITDE 509

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +  +  ++   F +F  +  +  +AHNA FD GFI+   +R++ D          LS
Sbjct: 510 MVMNADTIDAVLPRFLEFCGD--SVLVAHNAGFDTGFIHENAKRLDLDFHPTIVDTLGLS 567

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-FGFKT 187
            +   H +     N       + I   + H A+ D+     ++IK +    +   F    
Sbjct: 568 RSLMTHLAKFTLDN---LCKNLNIKLETHHRAVDDATATGKIFIKFVQMLEEKEIFDLDQ 624

Query: 188 NEDRFFKEEK 197
             +     E 
Sbjct: 625 VNEFVAGSED 634


>gi|266622988|ref|ZP_06115923.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
 gi|288865254|gb|EFC97552.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
          Length = 595

 Score = 82.3 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG   + +RIIEIGAV++++   T+R F  F+ P+      E  +L  I D 
Sbjct: 523 YVVFDIETTGFSPEKNRIIEIGAVKVVNGVITDR-FSTFVNPD-VPIPFEIEQLTSINDN 580

Query: 69  FLKDKPSF 76
            +   P  
Sbjct: 581 MVLSYPKI 588


>gi|314933443|ref|ZP_07840808.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus caprae C87]
 gi|313653593|gb|EFS17350.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus caprae C87]
          Length = 1442

 Score = 82.3 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 484 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMIQQMKELGV----- 594

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 595 --LNHLEINKKLTNEDAYKRARP 615


>gi|126729411|ref|ZP_01745225.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Sagittula stellata E-37]
 gi|126710401|gb|EBA09453.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Sagittula stellata E-37]
          Length = 468

 Score = 82.3 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 5/166 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL    D I++IGAV +++            + P GR   P + K+HG+TD  
Sbjct: 278 VLDTETTGLLPHKDEIVQIGAVRIVNGRIVPGERMDQLVNP-GRPIPPASSKVHGVTDAM 336

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  +     F      +++  +AHNA FD+ F++    R+  +   P      LS 
Sbjct: 337 VAGAPGIAEAGRRFHT--FARDSVIVAHNAPFDMAFLHRHKTRMGVEWTHPILDTVLLS- 393

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A     S  + L++LC R  +TI    +H AL D+   ++V+ +M+
Sbjct: 394 AVLFGASQTHTLDALCDRLAVTIPPNLRHTALGDAQATAEVFGRML 439


>gi|295398912|ref|ZP_06808894.1| DnaQ family exonuclease/DinG family helicase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978378|gb|EFG53974.1| DnaQ family exonuclease/DinG family helicase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 921

 Score = 82.3 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 7/177 (3%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++ D+ETTG +  K DRII++G V + +     R F  F  P  R   P   +L  I 
Sbjct: 4   RFVIMDLETTGNVPKKGDRIIQLGMVVVENGQIIER-FSSFFNPE-RDIPPFVQQLTNIN 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ + D P F+   ++  D   +      AHN  FD+ F+  EL      P     I   
Sbjct: 62  EQMVADAPVFAEEAAKVVDMLQQSYFV--AHNVSFDLQFLQEELHMAGFPPFSGPTIDTV 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                    +    L  L K   I       H A  D+ + + ++I ++    Q+  
Sbjct: 120 ELARIVFPDAESYKLADLAKLLCIAH--DQPHHADSDAEVTAKLFIALLDRLRQLPL 174


>gi|312110481|ref|YP_003988797.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y4.1MC1]
 gi|311215582|gb|ADP74186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y4.1MC1]
          Length = 921

 Score = 82.3 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 7/177 (3%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++ D+ETTG +  K DRII++G V + +     R F  F  P  R   P   +L  I 
Sbjct: 4   RFVIMDLETTGNVPKKGDRIIQLGMVVVENGQIIER-FSSFFNPE-RDIPPFVQQLTNIN 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ + D P F+   ++  D   +      AHN  FD+ F+  EL      P     I   
Sbjct: 62  EQMVADAPVFAEEAAKVVDMLQQSYFV--AHNVSFDLQFLQEELHMAGFPPFSGPTIDTV 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                    +    L  L K   I       H A  D+ + + ++I ++    Q+  
Sbjct: 120 ELARIVFPDAESYKLADLAKLLCIAH--DQPHHADSDAEVTAKLFIALLDRLRQLPL 174


>gi|284048335|ref|YP_003398674.1| DNA polymerase III, epsilon subunit [Acidaminococcus fermentans DSM
           20731]
 gi|283952556|gb|ADB47359.1| DNA polymerase III, epsilon subunit [Acidaminococcus fermentans DSM
           20731]
          Length = 223

 Score = 82.3 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 9/195 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP----NGRKNSPEALKLHG 64
            +V D+ETTGLD + D+IIEIGA+E+    +  RTF   L P     G+  SP   +L G
Sbjct: 25  YVVVDLETTGLDPERDQIIEIGALEVTAGKR-GRTFSTLLQPRTPLEGQYVSPFITRLTG 83

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E L   P        F  F        + +N  FD+GF+  + Q     PL    + 
Sbjct: 84  ITNEMLAAAPQPRQALEAFGKFLGS--RVAVGYNVGFDMGFLQQQFQDQLYRPLANDWVD 141

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                         + LN+L   Y +   ++  H AL D       + K+     +    
Sbjct: 142 VLPMAQTLFPLWDHHRLNNLAAWYHVE--NKEAHRALSDVETTETCFRKLKEDAGRQYPS 199

Query: 185 FKTNEDRFFKEEKKT 199
            +   ++  ++  K 
Sbjct: 200 LEDFLEKVRQKLNKK 214


>gi|194367724|ref|YP_002030334.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
           R551-3]
 gi|194350528|gb|ACF53651.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 169

 Score = 82.3 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/99 (46%), Positives = 56/99 (56%), Gaps = 4/99 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D ETTG+  +   R+IEIGAVEL+D   T R F  +L P  RK    A ++HGI+
Sbjct: 3   RIVALDTETTGISHRLGHRVIEIGAVELIDGQLTGRQFHTYLQPQ-RKVDWGAQRVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           D  L  KP FSS  +E  DF         AHNA FDVGF
Sbjct: 62  DAMLVGKPLFSSKAAELLDFLRGSEMV--AHNATFDVGF 98


>gi|116093619|gb|ABJ58772.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1411

 Score = 82.3 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 13/208 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+   +      ++  +  
Sbjct: 392 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH---HPLSETTINLTSIT 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +               N     HN +FDVGF++A L+R     +    +     
Sbjct: 448 DEMVQAADDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEISQPVVDTLEV 507

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   SR+ L+SLC++Y + + H   H A  D+     +  K++         F   
Sbjct: 508 SRLLHPEQSRHTLDSLCRKYNVALEH--HHRANQDAEATGYLMFKLLD-------AFNDK 558

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                  +     N    KR +P    +
Sbjct: 559 YHEDDLGKMNDYSNGEGYKRARPTHITV 586


>gi|99078640|ref|YP_611898.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040]
 gi|99035778|gb|ABF62636.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040]
          Length = 479

 Score = 82.3 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 5/169 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
             +VFD ETTGL    D I+E+ A  +L+        F+ ++ P GR     + K+HG+ 
Sbjct: 272 NFVVFDTETTGLSVTKDAIVELAAARVLNGRILDGEVFETYVDP-GRPIPAASTKIHGVR 330

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  +   P   ++   F D    Q+A  +AHNA FD+G +  +  +       P      
Sbjct: 331 DADVAQSPRIEAVIPAFHD--FAQSAVLVAHNAPFDIGLLRQQEVQTGCSWDHPVVDTVL 388

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           LS       S+ + L++LC R  I I  R +H A  D+   ++  I+++
Sbjct: 389 LSAL-VFGISADHSLDALCSRLSIEIPARHRHTAKGDARATAEALIRLL 436


>gi|15643342|ref|NP_228386.1| DNA polymerase III PolC [Thermotoga maritima MSB8]
 gi|6225287|sp|Q9ZHF6|DPO3_THEMA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|4981093|gb|AAD35661.1|AE001732_6 DNA polymerase III, alpha subunit [Thermotoga maritima MSB8]
 gi|3930535|gb|AAC80438.1| DNA polymerase III [Thermotoga maritima]
          Length = 1367

 Score = 82.3 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 7/189 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGLD + D IIEIGAV++      +  +   + P  R+ S ++ ++ GIT E
Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDE-YHTLIKP-SREISRKSSEITGITQE 415

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++K S   +  EF  F  +  +  +AHNA FD  F+   ++++          IDTL+
Sbjct: 416 MLENKRSIEEVLPEFLGFLED--SIIVAHNANFDYRFLRLWIKKVMGLD-WERPYIDTLA 472

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +A+         L+S+ ++ G+       H AL D+ + + V+++ +    +I     + 
Sbjct: 473 LAKSLLKLRSYSLDSVVEKLGLG--PFRHHRALDDARVTAQVFLRFVEMMKKIGITKLSE 530

Query: 189 EDRFFKEEK 197
            ++      
Sbjct: 531 MEKLKDTID 539


>gi|326204061|ref|ZP_08193922.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
           2782]
 gi|325985828|gb|EGD46663.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
           2782]
          Length = 1433

 Score = 82.3 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 7/172 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL+   D+I EIGAV++ +    +R F  F+ P G       +KL GITD+
Sbjct: 422 FVVFDIETTGLNPHQDKITEIGAVKVRNGQIVDR-FSAFVNP-GVSIPSFIVKLTGITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    + +EF +F     +  +AHNA FDVGFI    + + +     +  IDTL 
Sbjct: 480 MVKDAPPVEQVLNEFMEFIQG--SVLVAHNANFDVGFIKQNAKLMGEK--VKNPYIDTLE 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           + R+  P       ++  ++ + I   + H A+ DS   + +++  +    +
Sbjct: 536 LCRKMFPELGRYKLNIVAKH-LKIELENHHRAVDDSMATAKIFMHCINILKE 586


>gi|254463814|ref|ZP_05077225.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacterales bacterium Y4I]
 gi|206684722|gb|EDZ45204.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacterales bacterium Y4I]
          Length = 469

 Score = 82.3 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 5/177 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGL    D I++IGA+ ++ +       F   + P G      + K+HGI+D
Sbjct: 277 YVVFDTETTGLLPHKDEIVQIGALRVVRNRIVAGEQFGTLVDP-GTPIPAASTKVHGISD 335

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  P        F       +A  +AHNA FD+ F+    +R       P      L
Sbjct: 336 AMVQGAPDIGQAARAFHR--FASDAVIVAHNAPFDMAFLRRHAKRAGVSWDQPVLDTVLL 393

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           S A     S  + L++LC+R  +TI    +H A+ D+   ++V+ KM+        G
Sbjct: 394 S-AVLFGASQSHTLDALCERLEVTIPPALRHTAMGDAQATAEVFCKMLPMLEARGLG 449


>gi|254502460|ref|ZP_05114611.1| exonuclease family [Labrenzia alexandrii DFL-11]
 gi|222438531|gb|EEE45210.1| exonuclease family [Labrenzia alexandrii DFL-11]
          Length = 471

 Score = 82.3 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 5/179 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           VFD ETTGL    D I++IGAV +++            + P GR   P + K+HGI+D  
Sbjct: 281 VFDTETTGLMPNKDDIVQIGAVRVVNGRMVPGERIDQLVNP-GRPIPPASSKVHGISDTM 339

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P      ++F +    + +  +AHNA FD+ F+    +    +   P      LS 
Sbjct: 340 VADAPQPLEAVADFHE--FARESVIVAHNAPFDLAFLQKYGKVAGLEWPHPILDTVLLS- 396

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           A     +  + L++LC+R  I I    +H AL D+   ++   K++   +   F    +
Sbjct: 397 AVVFGSNEVHTLDALCERLCIDIRPEVRHTALGDAEATAEALCKLLPILTSKGFETFGD 455


>gi|308174031|ref|YP_003920736.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606895|emb|CBI43266.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens
           DSM 7]
 gi|328552843|gb|AEB23335.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus amyloliquefaciens TA208]
 gi|328912360|gb|AEB63956.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens
           LL3]
          Length = 928

 Score = 82.3 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 7/180 (3%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN +   P   +L 
Sbjct: 2   NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-QDIPPFIEQLT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+   ++++  F ++  E +   +       AHN  FD+GF+  EL     +  D   +
Sbjct: 60  GISTGMVENELPFEAVAEEIFHLLDGAYFV--AHNIHFDLGFVRHELSEAGYELTDCEVL 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                            L  LC    I       H A  D+ +   +++ ++     +  
Sbjct: 118 DTVELSRIVFPGFEGYKLGELCAELNIVHDRP--HRADSDAEVTGLIFLDILHKLKHLPL 175


>gi|239636258|ref|ZP_04677260.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus warneri L37603]
 gi|239597613|gb|EEQ80108.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus warneri L37603]
          Length = 1438

 Score = 82.3 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+  K S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPH-EKLSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLTDAPEIEDVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTDYGKHGLNFLAKKYGVD--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 +  + + N    KR +P
Sbjct: 591 --TNHIDINQKLSNEDAYKRARP 611


>gi|330685683|gb|EGG97324.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU121]
          Length = 1438

 Score = 82.3 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+  K S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPH-EKLSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + ++F ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLTDAPEIEDVLTDFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVD--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 +  + + N    KR +P
Sbjct: 591 --TNHIDINQKLSNEDAYKRARP 611


>gi|225375372|ref|ZP_03752593.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
           16841]
 gi|225212861|gb|EEG95215.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
           16841]
          Length = 1512

 Score = 82.3 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 7/192 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG     ++IIEIGAV+++    T+R F  F+ P          +L  I D+
Sbjct: 489 FVVFDLETTGFSPDKNKIIEIGAVKVVGGVITDR-FSTFVNPE-VPIPFRIEELTSIKDD 546

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P    I  EF  F     A  +AHNA+FD+ FI    +    +          L+
Sbjct: 547 MVIDAPKIEEILPEFMKFCEG--AIMVAHNAEFDMSFIKKNCKDQGIEREFTIIDTVALA 604

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                + +             + +S  + H A+ D+   +++++K +    +       +
Sbjct: 605 RILLPNLNRFKLDTVAKA---LNVSLENHHRAVDDAACTAEIFVKFIEMLKERGMENLDD 661

Query: 189 EDRFFKEEKKTV 200
            +       +TV
Sbjct: 662 VNHMVSTSPETV 673


>gi|148269487|ref|YP_001243947.1| DNA polymerase III PolC [Thermotoga petrophila RKU-1]
 gi|281411795|ref|YP_003345874.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
 gi|166217457|sp|A5IJJ8|DPO3_THEP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|147735031|gb|ABQ46371.1| DNA polymerase III catalytic subunit, PolC type [Thermotoga
           petrophila RKU-1]
 gi|281372898|gb|ADA66460.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
          Length = 1367

 Score = 82.3 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 7/189 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGLD + D IIEIGAV++ D    +  +   + P  R+ S  + ++ GIT E
Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVDE-YHTLIKP-SREISRRSSEITGITQE 415

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++K S   +  EF  F   +N+  +AHNA FD  F+   ++++          IDTL+
Sbjct: 416 MLENKRSIEEVLPEFLGFL--ENSIIVAHNANFDYRFLRLWIKKVMGLD-WERPYIDTLA 472

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +A+         L+S+ ++ G+       H AL D+ + + V+++ +    +I     + 
Sbjct: 473 LAKSLLKMRSYSLDSVVEKLGLG--PFRHHRALDDARVTAQVFLRFVEMMKKIGITKLSE 530

Query: 189 EDRFFKEEK 197
            +       
Sbjct: 531 IENLKDTID 539


>gi|228982633|ref|ZP_04142892.1| DNA polymerase III PolC [Bacillus thuringiensis Bt407]
 gi|228776816|gb|EEM25124.1| DNA polymerase III PolC [Bacillus thuringiensis Bt407]
          Length = 286

 Score = 81.9 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 81/211 (38%), Gaps = 8/211 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
             +V DIETT     K  RI EIGAV+ +D    ++ +   + P  +       KL GIT
Sbjct: 18  NFVVLDIETTAFSPVKGGRITEIGAVKYIDGKVVDK-YSQLINPEMK-IPANITKLTGIT 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++ KP +  +   F  F +      +AHNAKFD                    +   
Sbjct: 76  NDMVQGKPVYGQVLPVFQQFIDG--FLVVAHNAKFDWNRFLLFYFEKVGIHPKNEVLDSV 133

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                      +  L+  C  +G    ++++H A  D+       +++    +      +
Sbjct: 134 AVFQHFCPNKGKYKLDDFCTTFGYL--NKNRHRAYEDAEATGYCLLELKRRFASEIPEVE 191

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
               +    +K + P I  +KR K    +++
Sbjct: 192 EEPIKVQSVQKSSQPEI-FVKRVKYWEKKVS 221


>gi|229824076|ref|ZP_04450145.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
 gi|229786430|gb|EEP22544.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
          Length = 1435

 Score = 81.9 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL S  DRIIE+ AV++ +      TF+ F+ P G   S    +L GITD 
Sbjct: 420 YVVFDVETTGLSSVYDRIIELAAVKMRNGEVI-DTFEAFINP-GYHLSAMITELTGITDA 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P  + + + F +    ++   +AHNA FD+GF+N    R+     D   I     
Sbjct: 478 MLADAPPEAEVMARFAE--FSKDTILVAHNASFDMGFLNKTYARLGMPVPDQPVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                     + LN L K YG+T      H A+ DS     V  K++    +
Sbjct: 536 SRLVNPDMRSHRLNVLAKHYGVT--LEQHHRAVYDSETTGYVCYKLLDQAKE 585


>gi|166032729|ref|ZP_02235558.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC
           27755]
 gi|166027086|gb|EDR45843.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC
           27755]
          Length = 1521

 Score = 81.9 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 4/209 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  S  D+IIEIGAV++ +   T++ +  F+ P          +L  ITDE
Sbjct: 478 YVVFDLETTGFSSAKDKIIEIGAVKVENGEITDK-YSTFVNPK-IPIPFRITQLTSITDE 535

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P   +I  +F  F  +  A  +AHNA FDV FI    ++   +P   S     L+
Sbjct: 536 MVMESPEIETILPQFLKFVGD--AVLVAHNASFDVSFIEENCRQQGIEPDFTSVDTVGLA 593

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  S                 H         +  +   +I+M+            +
Sbjct: 594 RVLLPTLSKFKLNVVAKALNISQEHHHRAVDDARVTAEIYVKFIQMLEERGIETLDQMNH 653

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
                 E  + +P+  ++   K    R+ 
Sbjct: 654 FGAHNAEAIRKMPSYHVIVLAKNDIGRVN 682


>gi|314936575|ref|ZP_07843922.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655194|gb|EFS18939.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis subsp. hominis C80]
          Length = 1438

 Score = 81.9 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 13/208 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  P+  K S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDK-FERFSNPH-EKLSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVA---- 591

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                K+  K + N    KR +P    +
Sbjct: 592 ---NHKDINKKLSNEDAYKRARPTHVTL 616


>gi|170288161|ref|YP_001738399.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
 gi|170175664|gb|ACB08716.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
          Length = 1367

 Score = 81.9 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 7/189 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGLD + D IIEIGAV++ D    +  +   + P  R+ S  + ++ GIT E
Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVDE-YHTLIKP-SREISRRSSEITGITQE 415

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++K S   +  EF  F   +N+  +AHNA FD  F+   ++++          IDTL+
Sbjct: 416 MLENKRSIEEVLPEFLGFL--ENSIIVAHNANFDYRFLRLWIKKVMGLD-WERPYIDTLA 472

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +A+         L+S+ ++ G+       H AL D+ + + V+++ +    +I     + 
Sbjct: 473 LAKSLLKMRSYSLDSVVEKLGLG--PFRHHRALDDARVTAQVFLRFVEMMKKIGITKLSE 530

Query: 189 EDRFFKEEK 197
            +       
Sbjct: 531 IENLKDTID 539


>gi|320160945|ref|YP_004174169.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea
           thermophila UNI-1]
 gi|319994798|dbj|BAJ63569.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea
           thermophila UNI-1]
          Length = 934

 Score = 81.9 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 16/228 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIETTGLD + D IIEIGAV   +       +   + P  +       +L GIT++
Sbjct: 7   YVAIDIETTGLDPEKDCIIEIGAVRFSNRRVEAE-WSSLIKP-TKNIPSFITQLTGITND 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+   +  +   F    N   + HN +FD+ F+  +        L  + +IDT  
Sbjct: 65  MVRKAPTIQDVIGDLAHFV--GNCPIVGHNIRFDLSFLQKQH------ILWNNHVIDTYE 116

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +A    P++      +  +  + I   + H AL D+ +   ++I ++   S++       
Sbjct: 117 LASVLLPTASRYNLGVLAQS-LGILLPATHRALDDARVTHALFIALLEKASELPVDLLNE 175

Query: 189 ---EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
                     +   V    L ++   +  + +     +H    + L +
Sbjct: 176 IVQLSEPLNWDAYIVFQDVLNRKSAFVPAKPSG--RRQHQNLFEPLSE 221


>gi|228475024|ref|ZP_04059752.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis SK119]
 gi|228271009|gb|EEK12397.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis SK119]
          Length = 1438

 Score = 81.9 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 13/208 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  PN  K S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDK-FERFSNPN-EKLSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVA---- 591

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                K+  K + N    KR +P    +
Sbjct: 592 ---NHKDINKKLSNEDAYKRARPTHVTL 616


>gi|323493701|ref|ZP_08098821.1| DNA polymerase III, alpha subunit [Vibrio brasiliensis LMG 20546]
 gi|323312041|gb|EGA65185.1| DNA polymerase III, alpha subunit [Vibrio brasiliensis LMG 20546]
          Length = 204

 Score = 81.9 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 84/177 (47%), Gaps = 9/177 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL     DR IEIGAV+L++      TFQ  + P G + S       GIT+ 
Sbjct: 8   IVLDFETTGLSPNMGDRAIEIGAVKLINGEVV-DTFQQLMNP-GFRVSSFIEGYTGITNA 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L + PS   + S+F  F  + N   +AHNA FD  F++AE  RINKD L D +  +   
Sbjct: 66  MLANAPSCEEVMSQFHSFIADDN--LVAHNASFDKRFLDAEFDRINKDYLGDFACSLLVS 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
               +  PS +       K+     +    H AL DS + + +++ M+    Q    
Sbjct: 124 RRLNQDAPSHKLGDLVRYKQI---DNDGVFHRALADSQMTAKLWLLMLEDIEQRGIS 177


>gi|291166154|gb|EFE28200.1| DNA polymerase III, alpha subunit, Gram-positive type [Filifactor
           alocis ATCC 35896]
          Length = 1407

 Score = 81.9 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 98/239 (41%), Gaps = 28/239 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  S ND IIEIGAV++ +    +R F  F+ P  R+      +L  IT+E
Sbjct: 390 FVVFDIETTGFSSINDAIIEIGAVKIKNREIIDR-FSEFVNPK-REIPYHITELTSITNE 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++ +   +   F +    +++ ++AHN+ FD  FI    +R++      +     LS
Sbjct: 448 MVCNEDTIEEVLPRFME--FSKDSVFVAHNSDFDTSFIKENCKRLDLLYDRIAIDTVELS 505

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GFKT 187
            A               K   + IS  + H A+ D+   + +++K +    +        
Sbjct: 506 RALLTDLKRHKLNVVAKK---LGISLENHHRAVDDAEATAQIFLKFLTMIEECGVTTLAE 562

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF--------------------TRITKEELDEHDK 226
              +  K    T+ + S+    + L                      RI K EL EH +
Sbjct: 563 VNQKITKTNIDTIRDKSITIFAQNLVGLKNLYKLISFSHIKHFYRIPRILKSELVEHRE 621


>gi|146341316|ref|YP_001206364.1| DNA-directed DNA polymerase [Bradyrhizobium sp. ORS278]
 gi|146194122|emb|CAL78141.1| hypothetical protein; putative DNA-directed DNA polymerase
           [Bradyrhizobium sp. ORS278]
          Length = 737

 Score = 81.9 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 2/125 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG  S  DRI EIGAV++ ++      +   + P  R    + ++L GIT++
Sbjct: 563 YVVVDIETTGSWSSGDRITEIGAVKVRNHQLV-EQWHSLINPQ-RPIPAKIVELTGITNQ 620

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P F  I   F  F  +        N  +       E              +    
Sbjct: 621 MVRDAPVFHEIADSFMAFMGDGIFVAHNVNFDYGFLSSEFERLERRFRFPKLCTCVGMRR 680

Query: 129 IARRK 133
                
Sbjct: 681 RYPGH 685


>gi|182417583|ref|ZP_02948906.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237668138|ref|ZP_04528122.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378596|gb|EDT76124.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237656486|gb|EEP54042.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 1450

 Score = 81.9 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 5/167 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG    ND+IIEIGAV++ +    +  F  F+ P  R       +L  I ++
Sbjct: 437 YVVFDIETTGFSPVNDKIIEIGAVKIKNGEVIDN-FSHFVNPE-RSIPYVITELTSINND 494

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127
            ++D  +   +  +F +F  +  +  +AHNA FD GFI    +             +   
Sbjct: 495 MVRDAETIEILLPKFMEFCAD--SVLVAHNAAFDTGFIKKNCRDLGIDFNYSIMDTVPLA 552

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                     + +L +      +   HR+   A   + +L   +  +
Sbjct: 553 RFLCPDLKKVKLNLVAKHLGISLDNHHRAVDDAKCTAEILLKFFTML 599


>gi|73662813|ref|YP_301594.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642441|sp|Q49X49|DPO3_STAS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|72495328|dbj|BAE18649.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 1438

 Score = 81.9 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  P+ R  S     L  I+D+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVKDGEIIDK-FERFSNPHER-LSETIKNLTHISDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF  +  +  A ++AHNA FD+GFI+   + +         I     
Sbjct: 480 MLVDAPEIEEVLTEFKSWVGD--AIFVAHNASFDMGFIDTGYEHVGIGASTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+          +  
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYMFIKMLKQ-------LEAL 588

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                ++   ++ N    KR +P
Sbjct: 589 GVHNHQDINTSLSNEDAYKRARP 611


>gi|220931624|ref|YP_002508532.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
 gi|219992934|gb|ACL69537.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
          Length = 1397

 Score = 81.9 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL+   + IIEIGAV++      +  F  F+ P G     +  +L GIT+E
Sbjct: 385 FVVFDLETTGLNKFKNEIIEIGAVKVKSGKVIDE-FSSFVKP-GESIPNKITELTGITNE 442

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P    +  +F +F +   +  +AHNA FD GF+   L++  +  +    +     
Sbjct: 443 MVSRAPDIEGVIGDFLEFIDG--SILVAHNADFDYGFLQVALKKTGQGDISYPVLDTLTL 500

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                   S + LN+L +   +     + H A+ D+   S+++I  +         
Sbjct: 501 SRALLPDLSNHKLNTLARHLNVR--LDNHHRAVEDARATSEIFINFLSNIKNEGIE 554


>gi|56696683|ref|YP_167044.1| DNA polymerase III epsilon subunit family exonuclease [Ruegeria
           pomeroyi DSS-3]
 gi|56678420|gb|AAV95086.1| exonuclease, DNA polymerase III, epsilon subunit family [Ruegeria
           pomeroyi DSS-3]
          Length = 470

 Score = 81.9 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 5/177 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
             VFD ETTGL    D I++IGAV ++             + P GR   P + ++HG++D
Sbjct: 278 FAVFDTETTGLLPHKDEIVQIGAVRVVKGRIVPGERIDQLVDP-GRPIPPASTRVHGVSD 336

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P   +   +F      ++A  +AHNA FD+ F+     R   D   P      L
Sbjct: 337 AMVAGAPDIVAAARQFHQ--FARDAVIVAHNAPFDIAFLRRHGPRCGLDWDHPILDTVLL 394

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           S A     S  + L++LC R G+TI    +H AL D+   ++V  +M+         
Sbjct: 395 S-AVLFGASETHTLDALCDRLGVTIPAPLRHTALGDAQATAEVLCRMLPMLRARGLD 450


>gi|331001986|ref|ZP_08325506.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411782|gb|EGG91187.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 1480

 Score = 81.5 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 86/197 (43%), Gaps = 7/197 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTG  +KND I EIGAV+++     +R F  F+ P  R    +  +L  I+D 
Sbjct: 456 FIVFDIETTGFSAKNDAITEIGAVKVVKGEIVDR-FSTFVNP-RRPIPFKIEELTHISDA 513

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P    I  +F DF  +     +AHNA FD GFI    ++INK+          ++
Sbjct: 514 MVMNAPFIEDILPKFLDFCED--YIIVAHNAGFDTGFIRENAKKINKEYNPSIIDTVAMA 571

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R  L+++CK   I+      H A+ D+   + ++++ +           + 
Sbjct: 572 RLLLPE-LNRFKLDTVCKALNIS--LEGHHRAVNDAEATAQIWVEFIKRLKDKGISKLSE 628

Query: 189 EDRFFKEEKKTVPNISL 205
                +     V     
Sbjct: 629 VASLGETNADIVKKTKY 645


>gi|256112396|ref|ZP_05453317.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str.
           Ether]
          Length = 153

 Score = 81.5 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 62/149 (41%), Positives = 92/149 (61%), Gaps = 2/149 (1%)

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154
           +AHNA FD+GFINAEL R+++  +    I+DTL++ARRKHP   N L++LCKRYGI  SH
Sbjct: 6   VAHNAMFDLGFINAELARLDQAEITSEHIVDTLALARRKHPIGPNSLDALCKRYGIDNSH 65

Query: 155 RSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLF 213
           R+ HGALLD+ +L++VYI+++  G Q   G          + +      + L  R +PL 
Sbjct: 66  RTLHGALLDAQILAEVYIELIG-GKQTALGLTMESGSAGGDSRGNGSAPVVLAARPRPLP 124

Query: 214 TRITKEELDEHDKTIQTLGKNAIWDRYIS 242
            RI+  E   H   ++ +G  A+W +Y+S
Sbjct: 125 PRISDAERAAHAALVEKMGDKAVWKKYLS 153


>gi|153814386|ref|ZP_01967054.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
 gi|145848782|gb|EDK25700.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
          Length = 1459

 Score = 81.5 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 82/196 (41%), Gaps = 7/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTG  S  D IIEIGAV++ D   T+R F  F+ P  R    E   L  ITDE
Sbjct: 422 YIVFDIETTGFSSIKDAIIEIGAVKVTDGKITDR-FSTFVNPK-RPIPFEITNLTSITDE 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +  +F +     +   +AHNA FDVGFI    + +             L+
Sbjct: 480 MVMDSPTIDVVLPQFLE--FAGDGVLVAHNAGFDVGFIEQNCRSLGLSDEFVYLDTVALA 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  S             + IS  + H A+ D+   +++++K      +   G    
Sbjct: 538 RVLLPTLSKYKLNIVAKA---LNISLENHHRAVDDAEATAEIFVKFTEMLKKDQVGTLKE 594

Query: 189 EDRFFKEEKKTVPNIS 204
            +R+       +  + 
Sbjct: 595 VNRYGDRNVNAIRKMP 610


>gi|164688523|ref|ZP_02212551.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM
           16795]
 gi|164602936|gb|EDQ96401.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM
           16795]
          Length = 1432

 Score = 81.5 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 4/216 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  +KND+I EIGAV++ ++   +R F   + P  +  S +  +L GIT++
Sbjct: 418 FVVFDLETTGFSNKNDKITEIGAVKVKNFEIVDR-FNELINPE-KDISYKVQELTGITND 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KDKP+   I  +F +F  +  +  +AHNA+FD+GFIN + + +N +  + S     L+
Sbjct: 476 LIKDKPTIEEILPKFMEFVGD--SVLVAHNAEFDIGFINQKCKEMNIEFKNKSVDTLMLA 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                H       N   +      +H         +  +   ++ M+             
Sbjct: 534 RILLPHLKRFKLNNLTKELGVPLHNHHRAVDDAAATAQIFIKFLDMLQKKGAKKLSDVNE 593

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
                   K    +I+L+ ++      + K   D H
Sbjct: 594 VLGGIDYTKLKTKHITLIAQNLVGVKNLYKIVSDAH 629


>gi|157961820|ref|YP_001501854.1| DNA polymerase III subunit epsilon [Shewanella pealeana ATCC
           700345]
 gi|157846820|gb|ABV87319.1| DNA polymerase III, epsilon subunit [Shewanella pealeana ATCC
           700345]
          Length = 215

 Score = 81.5 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 60/198 (30%), Positives = 88/198 (44%), Gaps = 15/198 (7%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL   + DR IEIGAV L D    +R FQ  + P G + S       GI++ 
Sbjct: 19  IVLDFETTGLSPTQGDRAIEIGAVMLKDGKVVDR-FQQLMNP-GFRISGFIESYTGISNA 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L D PS   + ++F DF  + N   +AHNA FD  F++AEL+RIN   L   +  +   
Sbjct: 77  MLADAPSCEEVMAQFADFIGDYN--LVAHNASFDQRFLDAELKRINCHYLGQFACSMLIA 134

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ------I 181
               +  P+ +       K           H AL DS + + +++ M+    Q       
Sbjct: 135 RRLYQAAPNHKLGSLVSYKNI---QHDGVFHRALADSEMTASLWLAMLEDLQQDYQLHSP 191

Query: 182 NFGFKTNEDRFFKEEKKT 199
           +FG   +  +  K     
Sbjct: 192 DFGLLQSIAKQTKANINQ 209


>gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198642|gb|EGD55825.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 623

 Score = 81.5 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 4/169 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG  + +DRI EIGAV++         F   + P GR   P+ + L GIT  
Sbjct: 59  FVVVDLETTGGSADDDRITEIGAVKIRGGEVLGE-FATLVDP-GRAIPPQIVALTGITTA 116

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +   F +    +    +AHNA+FD+GF+     R+       + +   + 
Sbjct: 117 MLYDAPRIEEVLPAFAE--FARGTVLVAHNARFDMGFLRKSAARMRLPWPFSTSLCTVVM 174

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             R         +          +S R  H AL D+    +V+ +++  
Sbjct: 175 ARRILSRQEAPTVKLSALAELFQVSVRPTHRALDDARATVEVFHRLLER 223


>gi|154686487|ref|YP_001421648.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus amyloliquefaciens FZB42]
 gi|154352338|gb|ABS74417.1| DinG [Bacillus amyloliquefaciens FZB42]
          Length = 928

 Score = 81.5 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 66/180 (36%), Gaps = 7/180 (3%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN            
Sbjct: 2   NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPNQAIPPFIEQLTG 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
             +     + P  +     F        A ++AHN  FD+GF+  EL     +  D   +
Sbjct: 61  ISSGMVENELPFEAVAEEIFH---LLDGAYFVAHNIHFDLGFVRHELSEAGYELPDCEVL 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                            L  LC    I       H A  D+ +   V++ ++     +  
Sbjct: 118 DTVELSRIVFPGFEGYKLGELCAELNIVHDRP--HRADSDAEVTGLVFLDILHKLKHLPL 175


>gi|321311709|ref|YP_004203996.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis BSn5]
 gi|320017983|gb|ADV92969.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis BSn5]
          Length = 931

 Score = 81.5 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 101/238 (42%), Gaps = 28/238 (11%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN +       +L 
Sbjct: 2   NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPAFIEQLT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+++ ++++  F ++  E +   +       AHN  FD+GF+  EL       L    +
Sbjct: 60  GISNQMVENEQPFEAVAEEVFQLLDGAYFV--AHNIHFDLGFVKYEL-HKAGFQLPDCEV 116

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN- 182
           +DT+ ++R   P       +      + + H   H A  D+ +   ++++++    Q+  
Sbjct: 117 LDTVELSRIVFPGFEGYKLTELSEE-LQLRHDQPHRADSDAEVTGLIFLEILEKLRQLPY 175

Query: 183 --------------------FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
                                    NE+R  +    T  +   ++  + +  RI ++E
Sbjct: 176 PTLKQLRRLSQHFISDLTHLLDMFINENRHTEIPGYTRFSSFSVREPEAIDARINEDE 233


>gi|303258008|ref|ZP_07344017.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
           1_1_47]
 gi|330999422|ref|ZP_08323136.1| putative DNA polymerase III, epsilon subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|302859351|gb|EFL82433.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
           1_1_47]
 gi|329574848|gb|EGG56407.1| putative DNA polymerase III, epsilon subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 196

 Score = 81.5 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 1/172 (0%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R N+ R+I  D ETTG+    DRI+E+ A+E+ D      +F  F+ P  RK      ++
Sbjct: 18  RANRKRRIFLDTETTGMSQATDRIVEVCAIEVDDDFNEIDSFHAFINPQ-RKVPWFVTRI 76

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+ +EFL DKP FS I  +   F           +    +        R+        R
Sbjct: 77  HGLNNEFLDDKPIFSDIGRDLLLFLEGSELWAHNMSFDAGMLNAEFARNRLPTLEKVDCR 136

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  TL +AR   P  +N L++L  R+ I  S R  HGA++D+ LL  VY  +
Sbjct: 137 LNCTLQLARSTFPGQKNSLDALLDRFAIDRSERRLHGAMIDTRLLVKVYQNL 188


>gi|268610447|ref|ZP_06144174.1| DNA polymerase III, alpha subunit [Ruminococcus flavefaciens FD-1]
          Length = 1441

 Score = 81.5 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 6/196 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGL+ + DR+ EIGAV+L +      +F   + P  +    +  +L GI+D  
Sbjct: 426 IVFDVETTGLNFRTDRLTEIGAVKLKNLQVV-DSFNTKVNPE-KPIPEKITELTGISDAD 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P  +     F +F        IAHNA++D   IN   +R N D          +  
Sbjct: 484 VKDAPHEAEALRMFMEF-CGDKPVLIAHNARYDTNMINQVCKRQNIDFDYTWVDTLVMCQ 542

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           +               +   + +     H A  D+ +L+ +YI++             NE
Sbjct: 543 SMLPEMGRHKLNLVAKQ---LKLGKFDHHRASDDALMLAKIYIELAGRLKNDRGFKSLNE 599

Query: 190 DRFFKEEKKTVPNISL 205
                +E +T    S 
Sbjct: 600 LNRLVDEIETKKLKSY 615


>gi|321315425|ref|YP_004207712.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
 gi|320021699|gb|ADV96685.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
          Length = 1437

 Score = 81.5 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 5/197 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+ R  S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P    +  +F ++  +     +AHNA FD+GF+N   +++ +     + +IDTL 
Sbjct: 479 MLQDAPDVVDVIRDFREWIGD--DILVAHNASFDMGFLNVAYKKLLEVDKAKNPVIDTLE 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           + R  +P  +N   +        I     H A+ D+   + + +KM+   ++    +   
Sbjct: 537 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDTEATAYLLLKMLKDAAEKGIQYHDE 595

Query: 189 EDRFFKEEKKTVPNISL 205
            +    +      +   
Sbjct: 596 LNENMGQSNAYQRSRPY 612


>gi|291484213|dbj|BAI85288.1| DNA polymerase III PolC [Bacillus subtilis subsp. natto BEST195]
          Length = 1437

 Score = 81.5 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 5/197 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+ R  S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P    +  +F ++  +     +AHNA FD+GF+N   +++ +     + +IDTL 
Sbjct: 479 MLQDAPDVVDVIRDFREWIGD--DILVAHNASFDMGFLNVAYKKLLEVDKAKNPVIDTLE 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           + R  +P  +N   +        I     H A+ D+   + + +KM+   ++    +   
Sbjct: 537 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDTEATAYLLLKMLKDAAEKGIQYHDE 595

Query: 189 EDRFFKEEKKTVPNISL 205
            +    +      +   
Sbjct: 596 LNENMGQSNAYQRSRPY 612


>gi|28210957|ref|NP_781901.1| DNA polymerase III PolC [Clostridium tetani E88]
 gi|32469700|sp|Q895K2|DPO3_CLOTE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28203396|gb|AAO35838.1| DNA polymerase III, alpha chain [Clostridium tetani E88]
          Length = 1427

 Score = 81.5 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 7/206 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  +KND+IIEIGAV++ +    ++ +  F+ P  R    + ++L GI D 
Sbjct: 413 YVVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDK-YSTFVNPE-RIIPEKIIELTGIHDY 470

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTL 127
            +KD P    +  +F DF  +  +  +AHNA FDV FI    +             I   
Sbjct: 471 MVKDAPKIEEVLPKFIDFIED--SILVAHNANFDVSFIKKNCKDFGIHFNNPILDTIPLC 528

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                +    + ++ +      +   HR+   A     +L   +  +     +I      
Sbjct: 529 KFLYPELKRYKLNVVAKHLGIPLLNHHRAVEDAKTTGDILLKAFEDL--KDKEIMNLNML 586

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF 213
           NE+ F  ++ K  P   ++   K   
Sbjct: 587 NEEYFKNQDIKKSPTYHVIILVKNKI 612


>gi|240142703|ref|YP_002967216.1| Protein with DNA-directed DNA polymerase-like domain
           [Methylobacterium extorquens AM1]
 gi|240012650|gb|ACS43875.1| Protein with DNA-directed DNA polymerase-like domain
           [Methylobacterium extorquens AM1]
          Length = 754

 Score = 81.5 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 7/168 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTGL     DR+IE+GAVE++D     R FQ    P G   S     + GI+
Sbjct: 543 RFVVIDFETTGLSPNNGDRVIEVGAVEIVDGR-IGRRFQSLANP-GFPVSARITAITGIS 600

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  L D P  + +  E   F     A  +AHNA FD  F+    +       D   ++ T
Sbjct: 601 NAMLVDAPPLAEVIREVSAFIEG--ATLVAHNAGFDRRFLQ--AEMERLGLWDDREMLCT 656

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + + +R +P   +   +    +       + H AL D+   +++++ M
Sbjct: 657 MRLGKRAYPGLGSYKLAFLAEHAGVALPDAMHRALADAMATAELFLVM 704


>gi|260587424|ref|ZP_05853337.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
           20583]
 gi|331083705|ref|ZP_08332816.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542291|gb|EEX22860.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
           20583]
 gi|330403916|gb|EGG83468.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 236

 Score = 81.5 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 79/210 (37%), Gaps = 8/210 (3%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            M  +  D+ETTGL+   DRIIEIGAV++ +       +   + P   +      +L GI
Sbjct: 1   MMEYVALDLETTGLEPSKDRIIEIGAVKVRNKEVVGE-YGTLINPQ-MEIPDRITELTGI 58

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +++ ++ KP  +    E  DF  E     + HN  FD  F+  +                
Sbjct: 59  SNDMVQGKPLIAQALGELLDFCEE--LPLLGHNLMFDYSFVKHQAVNAGMVFEKKGMDTL 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            L+ A      SR+  N    R    I  +  H AL D+     +Y ++     +     
Sbjct: 117 KLARALLPELPSRSLQN---LRMHYEIPQKDAHRALEDARTTYLLYERLREEFEEKQPKL 173

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
                  +K  KK  P  +  KR      +
Sbjct: 174 FVPNALIYKV-KKQGPVTAAQKRYLQDLIK 202


>gi|82750865|ref|YP_416606.1| DNA polymerase III PolC [Staphylococcus aureus RF122]
 gi|123549060|sp|Q2YXK4|DPO3_STAAB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|82656396|emb|CAI80815.1| DNA polymerase III [Staphylococcus aureus RF122]
          Length = 1438

 Score = 81.5 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ ++IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYNKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                 E  K + N    KR +P
Sbjct: 591 --LNHNEINKKLSNQDAYKRARP 611


>gi|309389228|gb|ADO77108.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium
           praevalens DSM 2228]
          Length = 1404

 Score = 81.5 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 6/171 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTGL+     IIEIGAV+     K    F+ F+ P G +   +  ++ GI D 
Sbjct: 392 FIVFDLETTGLNPSQHEIIEIGAVKYQGGKKIAE-FESFINP-GVRIPAKITEITGINDR 449

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+ P    + ++F +         +AHNA FD GFI   L+++  +  D + +     
Sbjct: 450 MVKNAPGLEKVINDFIE--FAGTGVLVAHNADFDYGFIRTALEKLEIEKDDYTVLDTLGL 507

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                  S  + LN+L K +G+     + H AL D++  ++V  K++    
Sbjct: 508 SRAVVKDSKNHKLNTLAKYFGVD--LENHHRALDDANATAEVLAKLLELIK 556


>gi|254510913|ref|ZP_05122980.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacteraceae bacterium KLH11]
 gi|221534624|gb|EEE37612.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacteraceae bacterium KLH11]
          Length = 470

 Score = 81.5 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 5/168 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGL    D I++IGAV ++           + + P G      + ++H I D
Sbjct: 278 FVVFDTETTGLLPHKDEIVQIGAVRVIKGRIVEGEQLDMLVDP-GIPIPAASTRVHKIND 336

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P  +     F      ++A  +AHNA FD+ F++   +R+  +   P      L
Sbjct: 337 AMVLGAPDIAKAGLIFHQ--FSRDAVIVAHNAPFDMAFLHRHAKRMGVEWTHPVLDTVLL 394

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           S A     S  + L+++C R G+TI    +H AL D+   ++V ++M+
Sbjct: 395 S-AVLFGASETHTLDAVCARLGVTIPATLRHTALGDAVATAEVLVRML 441


>gi|16078721|ref|NP_389540.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221309536|ref|ZP_03591383.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221313860|ref|ZP_03595665.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221318783|ref|ZP_03600077.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323055|ref|ZP_03604349.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|118793|sp|P13267|DPO3_BACSU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|40060|emb|CAA36362.1| unnamed protein product [Bacillus subtilis]
 gi|2634030|emb|CAB13531.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 1437

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 5/197 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+ R  S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P    +  +F ++  +     +AHNA FD+GF+N   +++ +     + +IDTL 
Sbjct: 479 MLQDAPDVVDVIRDFREWIGD--DILVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLE 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           + R  +P  +N   +        I     H A+ D+   + + +KM+   ++    +   
Sbjct: 537 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDTEATAYLLLKMLKDAAEKGIQYHDE 595

Query: 189 EDRFFKEEKKTVPNISL 205
            +    +      +   
Sbjct: 596 LNENMGQSNAYQRSRPY 612


>gi|119718032|ref|YP_924997.1| exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
 gi|119538693|gb|ABL83310.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
          Length = 405

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 94/252 (37%), Gaps = 28/252 (11%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + D+ETTGL   K+DRI+EIG +E+ D     R +   + P           +HGIT   
Sbjct: 6   IIDLETTGLFPQKHDRIVEIGLIEVSDSGAIEREWATLVNPQR---DVGPTHIHGITARD 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+F  +               +AHNA+FD  F++ E +R +     P+  + T+ +
Sbjct: 63  VLDAPTFQEVAPYLIGSLAG--RTLVAHNARFDTQFLDYEFERASVGTRPPTPSLCTMQL 120

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           +      +   L   C    +      +H AL D+  ++ +    +V   +        E
Sbjct: 121 SSSYLRGASRKLKDCCVAANVPH--ADEHTALGDARAVAGLLNYYLVNTDRPVPWSAVLE 178

Query: 190 DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE----------------HDKTIQTLGK 233
                      P      R + +    T  E                    +  +  L +
Sbjct: 179 STRRHWWPAPGPTPG---RPRSVLRSATPREPAAWLDRITSTLPRNPNPMVEAYLDVL-E 234

Query: 234 NAIWDRYISSNQ 245
            A+ D Y+S+++
Sbjct: 235 QALLDGYLSAHE 246


>gi|269120698|ref|YP_003308875.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268614576|gb|ACZ08944.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC
           33386]
          Length = 1421

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 9/177 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI + +   I+FDIETTG D   D+IIEIGAV+L   +  +R F  F+ P       E +
Sbjct: 393 MIEQEE--YIIFDIETTGFDPYKDKIIEIGAVKLKGRNIIDR-FSAFVNPE-VPIPEEII 448

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           KL  ITD+ +KD     ++   F +F  +      AHNAKFDVGF+  + +++  + L  
Sbjct: 449 KLTNITDDMVKDAELIDTVLPRFLEFCGDCTMV--AHNAKFDVGFLTQKARQLELEFLPS 506

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                  +          N            IS  + H A+ D+   + ++IKM+  
Sbjct: 507 VIDTLYWARVLITDLKRFNL---KALANYFNISLDNHHRAVDDAEATASIFIKMLNM 560


>gi|296330873|ref|ZP_06873348.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674391|ref|YP_003866063.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151878|gb|EFG92752.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412635|gb|ADM37754.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 1437

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 5/197 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+ R  S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P    +  +F ++  +     +AHNA FD+GF+N   +++ +     + +IDTL 
Sbjct: 479 MLRDAPDVVDVIRDFREWIGD--DILVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLE 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           + R  +P  +N   +        I     H A+ D+   + + +KM+   ++    +   
Sbjct: 537 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDTEATAYLLLKMLKDAAEKGIQYHDE 595

Query: 189 EDRFFKEEKKTVPNISL 205
            +    +      +   
Sbjct: 596 LNENMGQSNAYQRSRPY 612


>gi|258511408|ref|YP_003184842.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478134|gb|ACV58453.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 1440

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 102/234 (43%), Gaps = 12/234 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD ETTGL+++ D +IEI AV++        T+   + P  R   P+ ++L GIT+E
Sbjct: 427 YVVFDTETTGLNAREDTLIEIAAVKVKAGQIV-DTYATLIDPE-RSLDPKIVELTGITNE 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P        F      + A  +AHNA+FDVGF+N   +R+  DP +   I     
Sbjct: 485 MVAGQPKLREALDGFRQ--FARGAVLVAHNAEFDVGFLNQCAERLGLDPWEQPVIDTLAL 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L +L +++  ++   + H AL DS   + V++ M+            +
Sbjct: 543 ARVLYPGEKNYKLKTLTQKF--SVDLVNHHRALADSEATAKVFVHMLKDAKARGIHNLLD 600

Query: 189 EDRFFKEEKKTVPN---ISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAI 236
            +    +   +       ++L R++     + +     H + +     + K+A+
Sbjct: 601 MNHLRGQIDISRVRPFHATVLVRNREGLRNLYRLVSIAHTQYLHRVPRIPKSAL 654


>gi|258510511|ref|YP_003183945.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477237|gb|ACV57556.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 240

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 13/231 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D ETTGL  +  R++E+  VE+    +    +   + P G    PEA  +H ITD
Sbjct: 7   RFVVVDTETTGLPPEG-RVVELALVEVGLEREPQIVYSALVDP-GCPIPPEASAVHHITD 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +  KP    ++ +  ++  +  A  +AHNA+FD G +    +                
Sbjct: 65  RDVAGKPRLFQVWPKVLEYIGD--AILVAHNAEFDRGMLPETGRPWICS---------KR 113

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                   + ++    L    GI +     H AL D+ + + V+ + +    +  +    
Sbjct: 114 LAQHLWRDAPKHSNQVLRYWLGIDVEVGQPHRALGDAIVTAHVFQRELRAYLEAGYPDDV 173

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           ++   F E    V  +   K        +  + LD   + +Q L  +  W 
Sbjct: 174 DDLIAFAESPIEVQTMPFGKHKGMPLKDVPLDYLDWALRNLQDLSPDLRWS 224


>gi|317498937|ref|ZP_07957220.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893770|gb|EFV15969.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1228

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 7/194 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG +S NDRIIEIGAV +++  +   TF  F+ P  R    +  +L  ITD+
Sbjct: 202 YVVFDIETTGFNSVNDRIIEIGAVRVVEG-EIKETFSEFVNPE-RPIPYKITQLTTITDD 259

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD  +   I  +F  F     +  +AHNA FD GFI    +R+N            L+
Sbjct: 260 MVKDAGTIEEILPQFLKFCEG--SVLVAHNAGFDTGFIRENAKRLNLPYDHTVVDTLGLA 317

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L+++CK     I   + H A+ D+     ++++ +    + +      
Sbjct: 318 -RCLMGHLGKFTLDNICKHLN--IILETHHRAVDDATATGKIFVEFISMLKEKDITDLDQ 374

Query: 189 EDRFFKEEKKTVPN 202
            + F  +    +  
Sbjct: 375 VNEFANDNVDLIKK 388


>gi|312793079|ref|YP_004026002.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180219|gb|ADQ40389.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 1402

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 80/197 (40%), Gaps = 7/197 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG DS+ DRIIEIGAV++ +   T+R F  F+ P G+       +L GI  +
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITDR-FSTFVDPEGK-IPVRISELTGIYQD 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P       EF       ++  +AHNA+FD+GF+    Q               LS
Sbjct: 448 MVDKAPKLIDAILEFER--FASSSVLVAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELS 505

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  SS            + +  R  H A  D+   + ++I ++       + +   
Sbjct: 506 RRLLTDLSSYKLNKVA---EFLNVELRHHHRADSDAETTAGIFISLLERLKARGYKWLKE 562

Query: 189 EDRFFKEEKKTVPNISL 205
            +      K  + + S 
Sbjct: 563 LNSIESNAKADLKSHSY 579


>gi|311068180|ref|YP_003973103.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
 gi|310868697|gb|ADP32172.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
          Length = 1437

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 5/197 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+    S   ++L GITD+
Sbjct: 421 YIVFDVETTGLSAVYDTIIELAAVKIRGGEIIDK-FERFANPH-HPLSATTIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P    +  +F ++ ++     +AHNA FD+GF+N   +R+ K     + +IDTL 
Sbjct: 479 MVRDAPDVIDVVRDFREWIDD--DILVAHNASFDMGFLNVAYKRLLKVEKAQNPVIDTLE 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           + R  +P  +N   +        I     H A+ D+     + +KM+   ++ +  +   
Sbjct: 537 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDAEATGYLLLKMLKDAAEKDIQYHDQ 595

Query: 189 EDRFFKEEKKTVPNISL 205
            +    +      +   
Sbjct: 596 LNENMGQSNAYQRSRPY 612


>gi|261251946|ref|ZP_05944520.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
 gi|260938819|gb|EEX94807.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
          Length = 204

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 83/176 (47%), Gaps = 9/176 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL     DR IEIGAV+L+D      TFQ  + P G + S       GIT+ 
Sbjct: 8   IVLDFETTGLSPNMGDRAIEIGAVKLIDGQVV-DTFQQLMNP-GFRVSSFIEGYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L   PS + + S+F DF    N   +AHNA FD  F++AE +RIN++   + +  +   
Sbjct: 66  MLAGAPSCAEVMSDFNDFIGNDN--LVAHNASFDKRFLDAEFERINRNYRGEFACSLLVS 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
               ++ PS +              +    H AL DS + + +++ M+    Q   
Sbjct: 124 RRLNQEAPSHKLGDLVRYMNI---DNDGVFHRALADSQMTAKLWLLMLEDMQQQGI 176


>gi|152976184|ref|YP_001375701.1| DNA polymerase III PolC [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152024936|gb|ABS22706.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 1433

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 11/212 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F  +  +     +AHNA FD+GF+N   ++   D      I     
Sbjct: 476 MLTDAPEVGEVFKKFQAWMGD--HTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK+    I     H A+ D+     +  KM+    +  F +   
Sbjct: 534 ARFLFPDMKNHRLNTLCKKL--DIELTQHHRAIYDTEATGYLLAKMLKEVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
            +    +            R   +    T +E
Sbjct: 592 LNDSMGQGDSYKRG-----RPSHVTLLATSDE 618


>gi|312876753|ref|ZP_07736732.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796484|gb|EFR12834.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 1402

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 7/197 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG DS+ DRIIEIGAV++ +   T+R F  F+ P G+       +L GI  +
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITDR-FSTFVDPEGK-IPVRISELTGIYQD 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P       EF        +  +AHNA+FD+GF+    Q               LS
Sbjct: 448 MVDKAPKLIDAILEFER--FASGSVLVAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELS 505

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  SS            + +  R  H A  D+   + ++I ++       + +   
Sbjct: 506 RRLLTDLSSYKLNKVA---EFLNVELRHHHRADSDAETTAGIFISLLERLKARGYKWLKE 562

Query: 189 EDRFFKEEKKTVPNISL 205
            +      K  + + S 
Sbjct: 563 LNSIESNAKADLKSHSY 579


>gi|158320555|ref|YP_001513062.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
 gi|158140754|gb|ABW19066.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
          Length = 1441

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 7/175 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I+FDIETTGL SKND I EIGA+++ +      +F   + P  R    + ++L GI+D+
Sbjct: 426 FIIFDIETTGLSSKNDEITEIGAIKIKNNRII-DSFSTLINPE-RSIPEKIVELTGISDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD+P+   +  +F DF  +     +AHN+ FD GFI  + +R      + +     L+
Sbjct: 484 MVKDQPTIEVVLPQFLDFIGD--CPVVAHNSDFDTGFIRDKAERYELSFDNIAIDTLKLA 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            A               +   + IS  + H A+ D+   ++++IK +   ++ + 
Sbjct: 542 RALLPDLKKHRLNVIAKE---LNISLENHHRAVDDAKATAEIFIKFVEMMNKKDI 593


>gi|311030323|ref|ZP_07708413.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. m3-13]
          Length = 844

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 7/177 (3%)

Query: 6   KMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K R +V D+ETTG    KND+II++GAV + D     R F  F+ P      P   +L  
Sbjct: 2   KQRFVVLDLETTGNTPKKNDKIIQVGAVLIEDGEIVER-FASFVNPQC-TIPPFIEQLTN 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I  + +   P+F+ I     +     +   +AHN  FD+ F+  EL+         +   
Sbjct: 60  INQDMVGRAPTFAQIAPMLCEMLKGSS--LVAHNVPFDLSFLQHELKTSGHPTFSGNTFD 117

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                           L  L   Y +     + H A  D+   + +++K++     +
Sbjct: 118 TVELARILLPTQKSYKLTDLSIFYELNH--DNPHRADSDAEATAIIFLKLLEKIKTL 172


>gi|288959104|ref|YP_003449445.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum
           sp. B510]
 gi|288911412|dbj|BAI72901.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum
           sp. B510]
          Length = 702

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 5/178 (2%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            +VFD ETTGL     D I++I AV ++     T  TF + + P  R   PE++  HGIT
Sbjct: 509 YVVFDTETTGLSPSAGDEIVQIAAVRIVGGRILTGETFNMLVDPK-RPIPPESIPFHGIT 567

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  +  KP+  ++  +F  F +   A  +AHNA FD+ F+  + +        P      
Sbjct: 568 DAMVAGKPTIDTVLPQFRSFVSG--AVLVAHNAAFDLKFLKMKERAAGVTFDCPVLDTML 625

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           LS     +           +     +   +  G  L +  +    I+M+         
Sbjct: 626 LSRMLLGNDGDHTLDGIAQRLGIAVVDRHTALGDSLVTAAVFLRMIEMLRDQGVRTLD 683


>gi|210608497|ref|ZP_03287873.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787]
 gi|210152988|gb|EEA83994.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787]
          Length = 1269

 Score = 80.7 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 7/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  +  D IIEIGAV++ +   T++ +  F+ P       E  +L  I D 
Sbjct: 456 YVVFDIETTGFSAVEDHIIEIGAVKVENGKITDK-YSTFVNPE-VPIPFEITQLTSIDDS 513

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P    I  +F +F  + +   +AHNA FDVGFI    + +N +    S     L+
Sbjct: 514 MVMDAPKIDVILPQFLEFVGDAS--LVAHNAGFDVGFIEQNCKNLNIEQEFVSVDTVALA 571

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  S             + IS  + H A+ D+   +++++K +    +        
Sbjct: 572 RVLLPTLSKYKLNIVAKA---LNISLENHHRAVDDAGATAEIFVKFVEMLKEREITTLKG 628

Query: 189 EDRFFKEEKKTVPNIS 204
            + F       V  + 
Sbjct: 629 VNAFGATNPDAVKKMP 644


>gi|307243534|ref|ZP_07525682.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptostreptococcus stomatis DSM 17678]
 gi|306493090|gb|EFM65095.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptostreptococcus stomatis DSM 17678]
          Length = 1202

 Score = 80.7 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 7/197 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFDIETTG     D I EIGAV L D    +R F  F+ P       E  +L  IT+
Sbjct: 186 RFVVFDIETTGFSVTGDNITEIGAVLLEDGQIKDR-FSTFVNPK-MDIPYEVQELTNITN 243

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++D P      ++F D    +++  +AHNA FD GFI  +   +  D          L
Sbjct: 244 DMVEDAPGIEEALNKFMD--FAKDSILVAHNAYFDTGFIAQKCSEVGLDYKHEKLDTLLL 301

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +     H               ++I+    H A+ D+   + ++++ +    +      +
Sbjct: 302 ARVLMPHMKRFGLD---RLTKALSINLSGHHRAVNDAEATAQLFLRFIAMMKKDGVEKLS 358

Query: 188 NEDRFFKEEKKTVPNIS 204
           + +  + +   T    S
Sbjct: 359 DINSVYGKIDHTKLRPS 375


>gi|254522385|ref|ZP_05134440.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
 gi|219719976|gb|EED38501.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
          Length = 169

 Score = 80.7 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/99 (45%), Positives = 55/99 (55%), Gaps = 4/99 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D ETTG+  +   R+IEIGAVEL+D   T R F  +L P  RK    A ++HGI+
Sbjct: 3   RIVALDTETTGISHRLGHRVIEIGAVELIDGQLTGRQFHTYLQPQ-RKVDRGAQRVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           D  L  KP FSS  +E   F         AHNA FDVGF
Sbjct: 62  DAMLVGKPLFSSKAAELLAFLRGSEMV--AHNATFDVGF 98


>gi|149915092|ref|ZP_01903620.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. AzwK-3b]
 gi|149810813|gb|EDM70652.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. AzwK-3b]
          Length = 481

 Score = 80.7 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 5/168 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            + FD ETTGL ++ D ++++GAV +L+       T   ++ P GR   P + ++H +TD
Sbjct: 277 FVAFDTETTGLSAQTDDVVQLGAVRVLNGRVVPGETLDTYVNP-GRPIPPASTEIHRVTD 335

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++    F ++   F      ++A  +AHNA FD+ F++    R+  +   P      L
Sbjct: 336 GHVRGASDFVTVGRNFHH--FARDAVLVAHNAPFDLAFLHRFADRMGVEWTHPVLDTVLL 393

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           S A     + ++ L++LC R  ITI    +H A  D+   ++  ++++
Sbjct: 394 S-AVVFGTTEQHSLDALCDRLAITIPDNLRHTAFGDAQATAEALVRLI 440


>gi|256851261|ref|ZP_05556650.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 27-2-CHN]
 gi|260660685|ref|ZP_05861600.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 115-3-CHN]
 gi|282934729|ref|ZP_06339972.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
 gi|297206128|ref|ZP_06923523.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16]
 gi|256616323|gb|EEU21511.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 27-2-CHN]
 gi|260548407|gb|EEX24382.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 115-3-CHN]
 gi|281301304|gb|EFA93605.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
 gi|297149254|gb|EFH29552.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16]
          Length = 1439

 Score = 80.7 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 10/223 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  +N+   ++FD+ETTGL S  D IIEIGAV++ D     R F  F+ P+   +     
Sbjct: 415 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH---HPLSET 469

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            ++  +        +               +     HN +FDVGF+NA L+R     +  
Sbjct: 470 TINLTSITDEMVSKADDEAEVIKRFQEFYGDRPLCGHNVQFDVGFVNAALRRSGLKEITQ 529

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +             +++ L+SLCK+Y + + H   H A  D+     +  K++     
Sbjct: 530 PVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEH--HHRANQDAEATGYLMFKLL---DA 584

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
            N  F+ ++     +  K        K        +T++ L  
Sbjct: 585 FNDKFEQDDLGKMNDYAKFGQVYKRAKPAHMTVLALTQKGLKN 627


>gi|282932865|ref|ZP_06338262.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
 gi|281302900|gb|EFA95105.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
          Length = 1439

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 10/223 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  +N+   ++FD+ETTGL S  D IIEIGAV++ D     R F  F+ P+   +     
Sbjct: 415 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH---HPLSET 469

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            ++  +        +               +     HN +FDVGF+NA L+R     +  
Sbjct: 470 TINLTSITDEMVSKADDEAEVIKRFQEFYGDRPLCGHNVQFDVGFVNAALRRSGLKEITQ 529

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +             +++ L+SLCK+Y + + H   H A  D+     +  K++     
Sbjct: 530 PVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEH--HHRANQDAEATGYLMFKLL---DA 584

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
            N  F+ ++     +  K        K        +T++ L  
Sbjct: 585 FNDKFEQDDLGKMNDYAKFGQVYKRAKPTHMTVLALTQKGLKN 627


>gi|260663976|ref|ZP_05864829.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii SJ-7A-US]
 gi|260561862|gb|EEX27831.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii SJ-7A-US]
          Length = 1439

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 10/223 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  +N+   ++FD+ETTGL S  D IIEIGAV++ D     R F  F+ P+   +     
Sbjct: 415 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH---HPLSET 469

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            ++  +        +               +     HN +FDVGF+NA L+R     +  
Sbjct: 470 TINLTSITDEMVSKADDEAEVIKRFQEFYGDRPLCGHNVQFDVGFVNAALRRSGLKEITQ 529

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +             +++ L+SLCK+Y + + H   H A  D+     +  K++     
Sbjct: 530 PVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEH--HHRANQDAEATGYLMFKLL---DA 584

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
            N  F+ ++     +  K        K        +T++ L  
Sbjct: 585 FNDKFEQDDLGKMNDYAKFGQVYKRAKPTHMTVLALTQKGLKN 627


>gi|304408937|ref|ZP_07390558.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|307302940|ref|ZP_07582695.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
 gi|304352758|gb|EFM17155.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|306913300|gb|EFN43722.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
          Length = 208

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 87/202 (43%), Gaps = 9/202 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   + DR IEIGAV + D   T R F   + P G + S       GI+++
Sbjct: 10  VVLDFETTGLSPNQGDRAIEIGAVLIEDGVITQR-FSELMNP-GFRISRFIEDYTGISNQ 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L+D    + + + F DF  + N   +AHNA FD  F++AE  +I    L      +   
Sbjct: 68  MLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYLGQFGCSLLVA 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
               +  P+ +       K+     +  + H AL D+ +   +++ M+    Q       
Sbjct: 126 RRLYQAAPNHQLGTLVRYKKL---PTDGTFHRALADAEMTGYLWLAMLADLQQEFGVNAP 182

Query: 188 NEDRFFKEEKKTVPNISLLKRD 209
             +   K  KKT  ++    R 
Sbjct: 183 TFELLQKIAKKTKADVPKFLRQ 204


>gi|114321155|ref|YP_742838.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227549|gb|ABI57348.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 729

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 8/177 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGI 65
             +VFD ETTGL   + D I+ I  V +++        F+  + P GR     ++  HGI
Sbjct: 535 NYVVFDTETTGLSPAEGDEIVSIAGVRMVNGRLLDGERFEQLVNP-GRTIPRSSILFHGI 593

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D  + DKP   ++   F  F  +  +  +AHNA FD+ FI  + +R      +P     
Sbjct: 594 HDTTVADKPRIETVLPRFHTFVGD--SVLVAHNAAFDMKFIRLKERRCGVRFDNPVLDTL 651

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            LS+    H +         +   + +   ++H A  D+ + + V+  ++    +  
Sbjct: 652 LLSVFLHDHTADHTLEAIAAR---LGVEVTAQHTAWGDALVTARVFACLLPLLRERG 705


>gi|313472267|ref|ZP_07812759.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 1153]
 gi|239529663|gb|EEQ68664.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 1153]
          Length = 1428

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 10/223 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  +N+   ++FD+ETTGL S  D IIEIGAV++ D     R F  F+ P+   +     
Sbjct: 404 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH---HPLSET 458

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            ++  +        +               +     HN +FDVGF+NA L+R     +  
Sbjct: 459 TINLTSITDEMVSKADDEAEVIKRFQEFYGDRPLCGHNVQFDVGFVNAALRRSGLKEITQ 518

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +             +++ L+SLCK+Y + + H   H A  D+     +  K++     
Sbjct: 519 PVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEH--HHRANQDAEATGYLMFKLL---DA 573

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
            N  F+ ++     +  K        K        +T++ L  
Sbjct: 574 FNDKFEQDDLGKMNDYAKFGQVYKRAKPTHMTVLALTQKGLKN 616


>gi|146297347|ref|YP_001181118.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410923|gb|ABP67927.1| DNA polymerase III catalytic subunit, PolC type
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 1402

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 7/197 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG D++ DRIIEIGAV++ +    +R F  F+ P G+       +L GI   
Sbjct: 390 FVVVDIETTGFDNQKDRIIEIGAVKIENGEIVDR-FSTFVDPEGK-IPIRISELTGIYQN 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P  S    EF  F +   A  +AHNA+FD+GF+    Q               LS
Sbjct: 448 MVDNAPKLSDAILEFEKFCSG--AILVAHNAQFDIGFLKRSYQECGLIFDYTYIDTLELS 505

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  SS            + I  +  H A  D+   + ++I ++       + +   
Sbjct: 506 RRVLTDLSSHKLNKVA---EFLNIELKHHHRADSDAETTAKIFISLIEKLKSRGYKYLKE 562

Query: 189 EDRFFKEEKKTVPNISL 205
            +      K  + + S 
Sbjct: 563 LNTIETNTKADLKSHSY 579


>gi|70726651|ref|YP_253565.1| DNA polymerase III PolC [Staphylococcus haemolyticus JCSC1435]
 gi|123660050|sp|Q4L5W6|DPO3_STAHJ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|68447375|dbj|BAE04959.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
           haemolyticus JCSC1435]
          Length = 1438

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 13/208 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  P+  K S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDK-FERFSNPH-EKLSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++  +  A ++AHNA FD+GFI+   +R+   P     I     
Sbjct: 480 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + ++IKM+    ++       
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTESTAYIFIKMVQQMKELGV----- 590

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                K+  + + N    KR +P    +
Sbjct: 591 --TNHKDINQKLSNEDAYKRARPTHVTL 616


>gi|269123116|ref|YP_003305693.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
           12112]
 gi|268314442|gb|ACZ00816.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
           12112]
          Length = 1465

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG    ND+IIEIGAV+L +    +R F  F+ P       + ++L GI D 
Sbjct: 404 FVVFDIETTGFSPINDKIIEIGAVKLKNGKVLDR-FSEFVNPQTI-IPKKIVELTGINDN 461

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD      +   F +F        +AHNAKFDVGFI+ + + +N +           S
Sbjct: 462 MVKDSDIIDKVMPRFLEFVKG--TTLVAHNAKFDVGFISKKCEDLNLETDFSYIDTLEWS 519

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     N            I   + H A+ D++  ++++ K++   S       T+
Sbjct: 520 KILVDDVKRFNLDT---LTKRFNIKLENHHRAVDDANATAELFKKLLSLVSANGVEKLTD 576

Query: 189 EDRFFKEEKK--TVPNISLLKRDKPLFTRITKEELDEHDKT 227
                +++ K     NI++L ++     R+ +     H K 
Sbjct: 577 VSEKLEKKPKIADTENITILVKNLAGLKRLYELVSISHLKY 617


>gi|238854744|ref|ZP_04645074.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 269-3]
 gi|238832534|gb|EEQ24841.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 269-3]
          Length = 1405

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 10/223 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  +N+   ++FD+ETTGL S  D IIEIGAV++ D     R F  F+ P+   +     
Sbjct: 381 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH---HPLSET 435

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            ++  +        +               +     HN +FDVGF+NA L+R     +  
Sbjct: 436 TINLTSITDEMVSKADDEAEVIKRFQEFYGDRPLCGHNVQFDVGFVNAALRRSGLKEITQ 495

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +             +++ L+SLCK+Y + + H   H A  D+     +  K++     
Sbjct: 496 PVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEH--HHRANQDAEATGYLMFKLL---DA 550

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
            N  F+ ++     +  K        K        +T++ L  
Sbjct: 551 FNDKFEQDDLGKMNDYAKFGQVYKRAKPTHMTVLALTQKGLKN 593


>gi|218291538|ref|ZP_03495419.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238658|gb|EED05882.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 240

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++ +  R +V D ETTGL  +  R++E+  VE+    +    +   + P G    PEA  
Sbjct: 1   MKLSDARFVVVDTETTGLPPEG-RVVELALVEVGLEREPQIVYSALVDP-GCPIPPEASA 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H ITD  +  KP  S ++ +   +  +  A  +AHNA+FD G +    +          
Sbjct: 59  VHHITDRDVAGKPRMSQVWPKVLGYIGD--AVLVAHNAEFDRGMLPETGRPWLCS----- 111

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                  +      + ++    L    GI +     H AL D+ + + V+ + +    + 
Sbjct: 112 ----KRLVQHLWPDAPKHANQVLRYWLGIDVEVGQPHRALGDALVTAHVFQRELRAYLEA 167

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
            +    +E   F E    V  +   K        +  + LD   + +Q L  +  W 
Sbjct: 168 GYPDDVDELTAFAESPIEVQTMPFGKHKGMPLKEVPLDYLDWALRNLQDLSPDLRWS 224


>gi|188589600|ref|YP_001920613.1| DNA polymerase III PolC [Clostridium botulinum E3 str. Alaska E43]
 gi|188499881|gb|ACD53017.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 1452

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 10/215 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG    ND+IIEIGAV++      ++ F  F+ P  R    +  +L  I + 
Sbjct: 439 FVVFDLETTGFSPINDKIIEIGAVKIKSGEIIDK-FSCFVNPK-RDIPYKITQLTSIDNN 496

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD     +I  +F +F        +AHNA FD GFI    +      ++    I    
Sbjct: 497 MVKDADVIENILPKFMEFCEG--TVVVAHNAAFDTGFIK---KNCRDLNINFDLPILDTV 551

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
              R        +        + IS  + H A+ D+   +D+   ++    +I   F+ N
Sbjct: 552 TLCRFLYPELKKVKLNIVAKFLGISLENHHRAVDDAKATADI---LLKSFEKIEEDFEIN 608

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           + +   +   +  +I        +    T+  L  
Sbjct: 609 DLKSLNDLFLSKVDIRKQPTYHIIILAKTQAGLKN 643


>gi|291558576|emb|CBL37376.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
           bacterium SSC/2]
          Length = 1470

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 7/194 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG +S NDRIIEIGAV +++  +   TF  F+ P  R    +  +L  ITD+
Sbjct: 444 YVVFDIETTGFNSVNDRIIEIGAVRVVEG-EIKETFSEFVNPE-RPIPYKITQLTTITDD 501

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD  +   I  +F  F     +  +AHNA FD GFI    +R+N            L+
Sbjct: 502 MVKDAGTIEEILPQFLKFCAG--SVLVAHNAGFDTGFIRENAKRLNLPYDHTVVDTLGLA 559

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L+++CK     I   + H A+ D+     ++++ +    + +      
Sbjct: 560 -RCLMGHLGKFTLDNICKHLN--IILETHHRAVDDATATGKIFVEFISMLKEKDITDLDQ 616

Query: 189 EDRFFKEEKKTVPN 202
            + F  +    +  
Sbjct: 617 VNEFANDNVDLIKK 630


>gi|251779220|ref|ZP_04822140.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243083535|gb|EES49425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 1452

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 10/215 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG    ND+IIEIGAV++      ++ F  F+ P  R    +  +L  I + 
Sbjct: 439 FVVFDLETTGFSPINDKIIEIGAVKIKSGEIIDK-FSCFVNPK-RDIPYKITQLTSIDNN 496

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD     +I  +F +F        +AHNA FD GFI    +      ++    I    
Sbjct: 497 MVKDADVIENILPKFMEFCEG--TVVVAHNAAFDTGFIK---KNCRDLNINFDLPILDTV 551

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
              R        +        + IS  + H A+ D+   +D+   ++    +I   F+ N
Sbjct: 552 TLCRFLYPELKKVKLNIVAKFLGISLENHHRAVDDAKATADI---LLKSFEKIEEDFEIN 608

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           + +   +   +  +I        +    T+  L  
Sbjct: 609 DLKSLNDLFLSKVDIRKQPTYHIIILAKTQAGLKN 643


>gi|227499278|ref|ZP_03929390.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
 gi|227218629|gb|EEI83863.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
          Length = 1358

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 74/206 (35%), Gaps = 8/206 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL    DRI EIGA +++D       +   + P       +  ++ GIT++
Sbjct: 342 FVVFDLETTGLSRYRDRITEIGACKVIDGKIC-EIYNELVNPE-MLIPEKITEITGITNQ 399

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P    +   F +F     +  +  N  FDVGF+     R+  D          ++
Sbjct: 400 MVESCPKIEEVLPGFLEFCQG--SILVGQNTDFDVGFVRENCTRLGLDFNPLYLDTLPMA 457

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFGFKT 187
            A        +      K   + I   + H A  D+   + ++IKM      +      +
Sbjct: 458 RALFADMKKFSLDKIARK---LEIPAFNHHRASDDARATAQIFIKMFKMIMKEDGIDLSS 514

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF 213
                    K      S     K   
Sbjct: 515 INKLKSYWPKAKHEYFSATVFAKNKI 540


>gi|217973179|ref|YP_002357930.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223]
 gi|217498314|gb|ACK46507.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223]
          Length = 208

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 9/173 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   + DR IEIGAV + +   T R F   + P G + S       GI+++
Sbjct: 10  VVLDFETTGLSPNQGDRAIEIGAVLIENGVITQR-FSELMNP-GFRISRFIEDYTGISNQ 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L+D    + + + F DF  + N   +AHNA FD  F++AE  +I    L      +   
Sbjct: 68  MLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYLGQFGCSLLVA 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
               +  P+ +       K+     +  + H AL D+ +   +++ M+    Q
Sbjct: 126 RRLYQAAPNHQLGTLVRYKQL---PTDGTFHRALADAEMTGHLWLAMLADLQQ 175


>gi|30171791|gb|AAP20774.1| DNA polymerase III alpha subunit [Peanut witches'-broom
           phytoplasma]
          Length = 1492

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 82/220 (37%), Gaps = 9/220 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGIT 66
             +V DIETTG     DRII I AV++ +       F   + P    K S    +L  I+
Sbjct: 404 NYVVLDIETTGFSKTRDRIISIAAVKIQNGKII-EYFDELINPGKDIKISNLIQRLTNIS 462

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRI 123
           DE L +KP    I S+F DF  +  N   +AHNA FD+ F+    + I      L     
Sbjct: 463 DEILLNKPHIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPLLPVIDT 522

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +        K     +    +        S    H AL D+   + ++++M+        
Sbjct: 523 LTLAQKYFNKILKYFSLEKIVKSFKIKLDSEGQYHNALFDARATALIFLEMLEQLEAQKI 582

Query: 184 ----GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                 + + D  F+        +   K    LF  I+  
Sbjct: 583 FNFYDLQGSLDIKFERPYHVNIIVKNKKGYNNLFHLISDA 622


>gi|317132568|ref|YP_004091882.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense
           YUAN-3]
 gi|315470547|gb|ADU27151.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense
           YUAN-3]
          Length = 1457

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL+ +NDRI EIGAV + +  +    F +F+ P+ +   P   +L GITD+
Sbjct: 443 FVAFDLETTGLNRENDRITEIGAVRIRNG-EIGERFDLFVNPH-KPIPPRITELTGITDD 500

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTL 127
            +KD         +F+ F  +  A  +AHNA+FD GF  A   R   +        I   
Sbjct: 501 MVKDAAEEDEALRQFFAFCGD--AVLVAHNAEFDTGFCRAAAARCGMEFPYTYMDSIPLC 558

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                   + + D  +          HR+   A +   +L  V + M+    
Sbjct: 559 RTVLPGLKNYKLDTVAGGLHLPPFNHHRASDDAFVLGQILVQV-LDMLREQK 609


>gi|238916793|ref|YP_002930310.1| DNA polymerase III subunit alpha, the Gram-positive type
           [Eubacterium eligens ATCC 27750]
 gi|238872153|gb|ACR71863.1| DNA polymerase III subunit alpha, the Gram-positive type
           [Eubacterium eligens ATCC 27750]
          Length = 1513

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 76/196 (38%), Gaps = 4/196 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  ++ DRIIEIGAV++ +    +R F  F+ P           L  I D+
Sbjct: 473 YVVFDLETTGFSAEVDRIIEIGAVKVCNGEIVDR-FSTFVNPE-IPIPFRIETLTHINDQ 530

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P    I  EF +F     A  +AHNA+FD  FI  + ++I  +          L+
Sbjct: 531 MVMNAPKIEEILPEFLEFCEG--AVMVAHNAEFDTSFIINKAEKIGINVDTTIIDTVLLA 588

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                +  +            +  SH         +  +    IKM+      +      
Sbjct: 589 QFLMPNLHNYKLDTLTKHLNVVLESHHRAVDDAAATADIFVKMIKMLYDRDIPDVDKLNE 648

Query: 189 EDRFFKEEKKTVPNIS 204
           E +  +   K +    
Sbjct: 649 EGKMDENAIKKLHQYH 664


>gi|330448476|ref|ZP_08312124.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492667|dbj|GAA06621.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 214

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 7/174 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
             ++ D ETTGL   + DR IEIGAV+L +     + FQ  + P G + S       GI+
Sbjct: 16  NVVILDFETTGLSPNQGDRAIEIGAVKLQNGEVVGQ-FQQLMNP-GFRVSSFIEGYTGIS 73

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  L+  PS   + +EF DF  + N   +AHNA FD  F++AEL++IN+          +
Sbjct: 74  NNMLRTAPSCDVVMNEFADFIGDAN--LVAHNASFDQRFLDAELEQINRH--YGGTFTCS 129

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           + IARR +  + N        Y     +   H AL DS + + +++ M+    Q
Sbjct: 130 MLIARRLYQDAPNHKLGTLVDYKNIYHNGVFHRALADSEMTARLWLVMLDDIKQ 183


>gi|167766537|ref|ZP_02438590.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1]
 gi|167711660|gb|EDS22239.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1]
          Length = 1473

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 7/194 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG +S NDRIIEIGAV +++  +   TF  F+ P  R    +  +L  ITD+
Sbjct: 447 YVVFDIETTGFNSVNDRIIEIGAVRVVEG-EIKETFSEFVNPE-RPIPYKITQLTTITDD 504

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD  +   I  +F  F     +  +AHNA FD GFI    +R+N            L+
Sbjct: 505 MVKDAGTIEEILPQFLKFCAG--SVLVAHNAGFDTGFIRENAKRLNLPYDHTVVDTLGLA 562

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L+++CK     I   + H A+ D+     ++++ +    + +      
Sbjct: 563 -RCLMGHLGKFTLDNICKHLN--IILETHHRAVDDATATGKIFVEFISMLKEKDITDLDQ 619

Query: 189 EDRFFKEEKKTVPN 202
            + F  +    +  
Sbjct: 620 VNEFANDNVDLIKK 633


>gi|253682510|ref|ZP_04863307.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum D str. 1873]
 gi|253562222|gb|EES91674.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum D str. 1873]
          Length = 1443

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 71/181 (39%), Gaps = 4/181 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  S+ D+IIEIGAV++ + +    +F  F+ P  +       +L  IT++
Sbjct: 430 FVVFDLETTGFSSEYDKIIEIGAVKIKNGNII-DSFSTFVNPEIK-IPYNITELTSITND 487

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+  +  ++  +F +F  +        N        N     I+ +       +    
Sbjct: 488 DVKNADTIDNVLPKFMEFCKDSVLVAHNANFDMSFIRKNCNDLSIDINY-TVMDTVPLAK 546

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
               +    + +  +      +   HR+   A   + +L   + K++      +      
Sbjct: 547 FLFPELKRYKLNTIAKHLGVSLENHHRAVDDAKATADILLCCF-KLLDDMKITSLDSLNK 605

Query: 189 E 189
           E
Sbjct: 606 E 606


>gi|307298437|ref|ZP_07578240.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915602|gb|EFN45986.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 1412

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 10/222 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTGL+ K D IIEIGA+++        TF  F+ P  ++ S     L GIT++
Sbjct: 402 FIVFDLETTGLNPKEDEIIEIGAIKMKGNEIL-ETFSSFVKPQ-KELSSLITSLTGITED 459

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L    +   +  EF      +    +AHNA FD GFI   +++      +   I     
Sbjct: 460 MLSGAGTIKQVLPEFTK--FAEGGILVAHNASFDYGFIRNSVKKYFGGDWEMPCIDTLAL 517

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   S +  N + +   + + H   H A  D+ + ++V  K +    +        
Sbjct: 518 AKSLYRAKSYSLDNVVKR---LKLGHFDHHRAYEDAKVTAEVLKKFLQQAKKRGVEKVNE 574

Query: 189 EDRFFKEEKKTV---PNISLLKRDKPLFTRITKEELDEHDKT 227
            ++  K +        +IS+L +++     + K     H K 
Sbjct: 575 LEKLRKNQNLDSLKPVHISILSKNRKGLENLYKLVTASHTKY 616


>gi|218288332|ref|ZP_03492631.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241691|gb|EED08864.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 1440

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 102/234 (43%), Gaps = 12/234 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD ETTGL+++ D +IEI AV++        T+   + P  R   P+ ++L GIT+E
Sbjct: 427 YVVFDTETTGLNAREDTLIEIAAVKVKAGQIV-DTYATLIDPE-RALDPKIVELTGITNE 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P        F      + A  +AHNA+FDVGF+N   +R+  DP +   I     
Sbjct: 485 MVAGQPKLKEALDGFRQ--FARGAVLVAHNAEFDVGFLNQCAERLGLDPWEEPVIDTLAL 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L +L +++  ++   + H AL DS   + V++ M+            +
Sbjct: 543 ARVLYPGEKNYKLKTLTQKF--SVDLVNHHRALADSEATAKVFVHMLKDAKARGIHNLLD 600

Query: 189 EDRFFKEEKKTVPN---ISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAI 236
            +    +   +       ++L R++     + +     H + +     + K+A+
Sbjct: 601 MNHLRGQIDISRVRPFHATVLVRNREGLRNLYRLVSIAHTQYLHRVPRIPKSAL 654


>gi|291545334|emb|CBL18442.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp.
           SR1/5]
          Length = 1129

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 12/224 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  +   RIIEIGAV++     T+R F  F+ P          +L  I D 
Sbjct: 102 FVVFDIETTGFSALTCRIIEIGAVKVEKGQITDR-FSTFVNPE-VPIPFRIEQLTSINDS 159

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P    +  +F +F        +AHNA FD+ FI    +R              ++
Sbjct: 160 MVLDAPVIEEVLPKFLEFCEG--CVMVAHNADFDMSFIIENCKRQGISDDFTYVDTVGMA 217

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R  L+++ K  G+++ H   H A+ D+   ++++++ +    + +      
Sbjct: 218 RFLLPA-LNRFKLDTVAKAVGVSLDH--HHRAVDDAACTAEIFVRFVKMLEERDIFDVDE 274

Query: 189 EDRFFKEEKKTVPNIS-----LLKRDKPLFTRITKEELDEHDKT 227
            +R       T+  +      +  R++     + K     H K 
Sbjct: 275 MNRQGAVSPDTIRKLPTYHAIVFARNETGRINLYKLVSQSHLKY 318


>gi|197301360|ref|ZP_03166441.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC
           29176]
 gi|197299517|gb|EDY34036.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC
           29176]
          Length = 1517

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 7/194 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTG  +  D+IIEIGAV++++    +R F  F+ P  R    E   L  ITDE
Sbjct: 481 YIVFDIETTGFSAIRDKIIEIGAVKVVNGEIVDR-FSTFVNPQ-RPIPFEITNLTSITDE 538

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +     ++  +F +F  +     +AHNA FDVGFI    +    +          ++
Sbjct: 539 MVLEADPIENVLPQFLEFVGD--GVLVAHNASFDVGFIEQNCRYQEIEYRFTYVDTVAMA 596

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  S             + IS  + H A+ D+   +++++K +    + +      
Sbjct: 597 RVLLPTLSKYKLNLVAKT---LGISLENHHRAVDDAGATAEIFVKFVEMLKKDHITDLKG 653

Query: 189 EDRFFKEEKKTVPN 202
            +RF +     +  
Sbjct: 654 INRFGERNVNAIRK 667


>gi|257066105|ref|YP_003152361.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
 gi|256797985|gb|ACV28640.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
          Length = 1365

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 76/206 (36%), Gaps = 8/206 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL    DRI EIGA  +     T   +   + P       + +++ GIT+E
Sbjct: 349 FVVFDLETTGLSRYKDRITEIGACRVEGGKIT-EIYNELVNPE-MVIPEKIIEITGITNE 406

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P+   +   F DF  +  +  +  N  FDVGF+     R+  D          ++
Sbjct: 407 MVKDCPTIEEVLPGFLDFCKD--SILVGQNTDFDVGFVRENCHRMGLDFNPIYLDTLPMA 464

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFGFKT 187
            A        +      K   + I   + H A  D+   + ++IKM      +      T
Sbjct: 465 RALFSDMKKFSLDKIARK---LEIPAFNHHRASDDARATAQIFIKMFKMIMEEDGINLST 521

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF 213
                    K      S     K   
Sbjct: 522 INKLKSHWPKSKHEYFSATVYAKDKV 547


>gi|319649525|ref|ZP_08003681.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
 gi|317398687|gb|EFV79369.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
          Length = 1441

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 85/189 (44%), Gaps = 6/189 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++ D    +R F+ F  P+    S   + L GITD+
Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKIHDGEIIDR-FESFANPH-HPLSATTINLTGITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P    +  +F +     +A  +AHNA FD+GF+N   +++         I     
Sbjct: 484 LVENAPEVEEVLKKFHE--WAGDAVLVAHNASFDMGFLNVGYKKMGIGKASNPVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L K++   +     H A+ D+     + +KM+    +    +   
Sbjct: 542 ARFLYPDMKNHRLNTLAKKF--DVELTQHHRAIYDAEATGYLLLKMLKHADEKGIEYHDQ 599

Query: 189 EDRFFKEEK 197
            +    +  
Sbjct: 600 FNDNMGQGN 608


>gi|157692337|ref|YP_001486799.1| DNA polymerase III PolC [Bacillus pumilus SAFR-032]
 gi|157681095|gb|ABV62239.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus
           SAFR-032]
          Length = 1437

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 92/197 (46%), Gaps = 5/197 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      +R F+ F  P+    S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKIKGGEIIDR-FEAFANPH-HPLSATTIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P    +  +F ++        +AHNA FD+GF+N   +R+ K     + +IDTL 
Sbjct: 479 MVRDAPDVVDVVRDFKEWI--GQDILVAHNASFDMGFLNTAYKRLLKTDKASNPVIDTLE 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           + R  +P  +N   +        I     H A+ D+     + +KM+   ++ +  +   
Sbjct: 537 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDAEATGYLMLKMLKDAAEKDIAYHDQ 595

Query: 189 EDRFFKEEKKTVPNISL 205
            +    +      +   
Sbjct: 596 LNENMGQSNAYQRSRPY 612


>gi|144897909|emb|CAM74773.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 677

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 8/177 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            IVFD ETTGL   + D+I++IGAV +++    +  +F   + P GR   PE++K HGIT
Sbjct: 484 FIVFDTETTGLQPSQGDQIVQIGAVRIVNGRILSGESFNRIVNP-GRVIPPESIKFHGIT 542

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +KDKP    +  +F       +A  +AHNA FD+ F+    ++      +P      
Sbjct: 543 DDMVKDKPPLGVVLPQFKA--FAADAVLVAHNAAFDLKFLRMNERQFGLKFDNPVLDTMM 600

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           LS      P + + L+++C R GI+I    +H AL D+ + + V +  +        
Sbjct: 601 LS-NYLDGPETGHSLDAICDRLGISI--TDRHTALGDAIVTAAVLLNQIDALESRGI 654


>gi|222151098|ref|YP_002560252.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
 gi|222120221|dbj|BAH17556.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
          Length = 1434

 Score = 80.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 13/208 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL S+ D+IIE+ AV++ D    ++ F+ F  P G + +     L GITD+
Sbjct: 418 YVVFDVETTGLSSQYDKIIELAAVKVKDGEIIDK-FERFSNP-GERLNETIKNLTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P   S+ ++F DF  +  A ++AHNA FD+GFI+    R+   P +   I     
Sbjct: 476 MLIDAPPIESVLNDFKDFVGD--AIYVAHNASFDMGFIDTGFDRLGYGPTENGVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + +++KM+     +       
Sbjct: 534 SRTINTEMGKHGLNFLAKKYGVE--LTQHHRAIYDAETTAHIFVKMLKQMETLGV----- 586

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                KE    + N    KR +P+   +
Sbjct: 587 --TNHKEIDLKLSNKDAYKRARPMHVTL 612


>gi|294678385|ref|YP_003579000.1| PAS domain/exonuclease domain-containing protein [Rhodobacter
           capsulatus SB 1003]
 gi|294477205|gb|ADE86593.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB
           1003]
          Length = 704

 Score = 80.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 6/177 (3%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
            +VFD ETTGL     D I++I AV +++  +     F   + P GR     +  +HGIT
Sbjct: 510 FVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNP-GRPIPAASTAVHGIT 568

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +   P+ + +   F      + A  +AHNA FD+       + +     D   +   
Sbjct: 569 EAMVATAPAIAEVGRRFHK--FAEGAVLVAHNAPFDL-EFLRRKELLIGKNFDNPVLDTV 625

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           L  A     +  + L++L  R GITI   ++H AL D+   ++ +++++        
Sbjct: 626 LLSAVVFGAAEGHSLDALTHRLGITIPEEARHTALGDTVATAEAFLRLLPALKARGL 682


>gi|228964616|ref|ZP_04125724.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228795047|gb|EEM42545.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 365

 Score = 80.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            T +  +   +        +L  +        KE++ E++
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215


>gi|194015013|ref|ZP_03053630.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           pumilus ATCC 7061]
 gi|194014039|gb|EDW23604.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           pumilus ATCC 7061]
          Length = 1437

 Score = 80.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 5/197 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      +R F+ F  P+    S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKIKGGEIIDR-FEAFANPH-HPLSATTIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  +F ++        +AHNA FD+GF+N   +R+ K     + +IDTL 
Sbjct: 479 MVKDAPDVVDVVRDFKEWI--GQDILVAHNASFDMGFLNTAYKRLLKTDKASNPVIDTLE 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           + R  +P  +N   +        I     H A+ D+     + +KM+   ++ +  +   
Sbjct: 537 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDAEATGYLMLKMLKDAAEKDIAYHDQ 595

Query: 189 EDRFFKEEKKTVPNISL 205
            +    +      +   
Sbjct: 596 LNENMGQSNAYQRSRPY 612


>gi|294677643|ref|YP_003578258.1| PAS domain/exonuclease domain-containing protein [Rhodobacter
           capsulatus SB 1003]
 gi|6014992|sp|O68045|DPO3E_RHOCA RecName: Full=DNA polymerase III subunit epsilon-like protein
 gi|3128279|gb|AAC16131.1| DNA polymerase III alpha chain [Rhodobacter capsulatus SB 1003]
 gi|294476463|gb|ADE85851.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB
           1003]
          Length = 704

 Score = 80.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 6/177 (3%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
            +VFD ETTGL     D I++I AV +++  +     F   + P GR     +  +HGIT
Sbjct: 510 FVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNP-GRPIPAASTAVHGIT 568

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +   P+ + +   F      + A  +AHNA FD+       + +     D   +   
Sbjct: 569 EAMVATAPAIAEVGRRFHK--FAEGAVLVAHNAPFDL-EFLRRKELLIGKNFDNPVLDTV 625

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           L  A     +  + L++L  R GITI   ++H AL D+   ++ +++++        
Sbjct: 626 LLSAVVFGAAEGHSLDALTHRLGITIPEEARHTALGDTVATAEAFLRLLPALKARGL 682


>gi|153000864|ref|YP_001366545.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185]
 gi|160875572|ref|YP_001554888.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195]
 gi|151365482|gb|ABS08482.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185]
 gi|160861094|gb|ABX49628.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195]
 gi|315267759|gb|ADT94612.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678]
          Length = 208

 Score = 80.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 9/173 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   + DR IEIGAV + D   T R F   + P G + S       GI+++
Sbjct: 10  VVLDFETTGLSPNQGDRAIEIGAVLIEDGVITQR-FSELMNP-GFRISRFIEDYTGISNQ 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L+D    + + + F DF  + N   +AHNA FD  F++AE  +I    L      +   
Sbjct: 68  MLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYLGQFGCSLLVA 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
               +  P+ +       K+     +  + H AL D+ +   +++ M+    Q
Sbjct: 126 RRLYQAAPNHQLGTLVRYKQL---PTDGTFHRALADAEMTGHLWLAMLADLQQ 175


>gi|126174568|ref|YP_001050717.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155]
 gi|125997773|gb|ABN61848.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155]
          Length = 208

 Score = 80.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 9/173 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   + DR IEIGAV + D   T R F   + P G + S       GI+++
Sbjct: 10  VVLDFETTGLSPNQGDRAIEIGAVLIEDGVITQR-FSELMNP-GFRISRFIEDYTGISNQ 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L+D    + + + F DF  + N   +AHNA FD  F++AE  +I    L      +   
Sbjct: 68  MLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYLGQFGCSLLVA 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
               +  P+ +       K+     +  + H AL D+ +   +++ M+    Q
Sbjct: 126 RRLYQAAPNHQLGTLVRYKQL---PTDGTFHRALADAEMTGHLWLAMLADLQQ 175


>gi|126654115|ref|ZP_01725933.1| DNA polymerase III PolC [Bacillus sp. B14905]
 gi|126589395|gb|EAZ83545.1| DNA polymerase III PolC [Bacillus sp. B14905]
          Length = 1443

 Score = 80.0 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 6/175 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++ D    ++ ++ F  P+    S   ++L GITD+
Sbjct: 428 YVVFDVETTGLSTAYDTIIELAAVKIKDGQVIDK-YESFANPH-HPLSATTIELTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P    +  EF  F  +     +AHNA FD+GF+    ++   +      I     
Sbjct: 486 MVRHAPEVEQVIKEFHAFIGD--GIVVAHNASFDIGFLYTGYKKFGLEGTTHPVIDTLEL 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     + LN+LCK++ I       H A+ D+     + ++++    ++  
Sbjct: 544 ARLLYPTMKNHRLNTLCKKFNIE--LTQHHRAIYDTEATGYLLLQLLKDADELVI 596


>gi|15805882|ref|NP_294580.1| DNA polymerase III subunit epsilon [Deinococcus radiodurans R1]
 gi|6458571|gb|AAF10431.1|AE001939_8 DNA polymerase III, epsilon subunit, putative [Deinococcus
           radiodurans R1]
          Length = 197

 Score = 80.0 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 8/173 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRK-----NSPEALKLH 63
           +VFD+ETTG    +  I+EIGAV ++         F+  + P            +A ++H
Sbjct: 24  VVFDLETTGFSPASAAIVEIGAVRIVGGQIDETLKFETLVRPTRPDGSLLSIPWQAQRVH 83

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+DE ++  P+   +  +F+DF +   +  +AHN  FD GF+ A  +R+         +
Sbjct: 84  GISDEMVRRAPAIKDVLPDFFDFVDG--SAVVAHNVSFDGGFMRAGAERLGLSWAPEREL 141

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  R       ++L  L +R G+  +   +H +  D  + +  Y++++ 
Sbjct: 142 CTMQLSRRAFPRERTHNLTVLAERLGLEFAPGGRHRSYGDVQVTAQAYLRLLE 194


>gi|331082627|ref|ZP_08331750.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400246|gb|EGG79888.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 1487

 Score = 80.0 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 80/210 (38%), Gaps = 6/210 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  +  D+IIEIGAV++ +   T R F  F+ P          +L  I D 
Sbjct: 463 YVVFDIETTGFSALKDKIIEIGAVKVENGRITER-FSEFVNPQ-IPIPFRIEELTSINDN 520

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   I  +F  F        +AHNA+FD+ FI    + I  +  D       ++
Sbjct: 521 MVADAPTIDVILPKFEKFCEG--CVMVAHNAEFDMSFIRKNYEDIGIEREDTVVDTVGMA 578

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                  +    D  +      +   HR+   A   + +    +I+M       N     
Sbjct: 579 RFLLPQLNRFKLDTVAKAVGVSLEHHHRAVDDASCTADIFVK-FIEMCAERDIFNLDELN 637

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
            +        + +P    +   K    R+ 
Sbjct: 638 EKGTVSVHSIQKMPTYHAIILAKNDVGRVN 667


>gi|302872252|ref|YP_003840888.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575111|gb|ADL42902.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 1402

 Score = 80.0 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 5/220 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG DS+ DRIIEIGAV++ +   T R F  F+ P G+       +L GI  +
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITER-FSTFVDPEGK-IPVRISELTGIYQD 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  S    EF        +  +AHNA+FD+GF+    Q               LS
Sbjct: 448 MVDKAPKLSDAILEFER--FASGSVLVAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELS 505

Query: 129 IARRKHPSSRNDLN-SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                  SS      +      +   HR+   A   +++   +  ++   G +      +
Sbjct: 506 RRLLTDLSSHKLNKVAEFLNVELKHHHRADSDAETTANIFISLVERLKARGYKWLKELNS 565

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
            E     + K    + ++L +++     + K     H + 
Sbjct: 566 IESNAKADLKSHSYHATILVKNQQGLKNLYKLVSYSHLEY 605


>gi|163815213|ref|ZP_02206590.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759]
 gi|158449408|gb|EDP26403.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759]
          Length = 1623

 Score = 80.0 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 7/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL  K+++IIEIGAV++ D      TF  F+ P G     +  +L  I D+
Sbjct: 567 YVVFDIETTGLSKKHNKIIEIGAVKVKDGEVV-DTFSEFINP-GVPIPYQIEQLTSINDD 624

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P +  I   F +F  +     +AHNA FD GF+    + +     +      TLS
Sbjct: 625 MVKDAPMYDVIVPRFVEFCGD--DIVVAHNASFDTGFVKKNAEELGLRFDNTVLDTMTLS 682

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                            +   + + +   H A+ D+   S V+ K++    + +     +
Sbjct: 683 HILLPELGKFTLDRVCKE---LKVVNAHHHRAIDDAEATSKVFFKLLDMLKERDVKTMDD 739

Query: 189 EDRFFKEEKKTVPNIS 204
            +         +    
Sbjct: 740 LNVLGSTSPDAIKKDK 755


>gi|229043387|ref|ZP_04191104.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH676]
 gi|228725968|gb|EEL77208.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH676]
          Length = 934

 Score = 80.0 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VEMAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            T +  +   +        +L  +        KE++ E++
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215


>gi|260589219|ref|ZP_05855132.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
 gi|260540300|gb|EEX20869.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
          Length = 1487

 Score = 80.0 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 6/210 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  +  D+IIEIGAV++ +   T R F  F+ P          +L  I D 
Sbjct: 463 YVVFDIETTGFSALKDKIIEIGAVKVENGRITER-FSEFVNPQ-IPIPFRIEELTSINDN 520

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   I  +F  F        +AHNA+FD+ FI    + I  +  D       ++
Sbjct: 521 MVADAPTIDVILPKFEKFCEG--CVMVAHNAEFDMSFIRKNYEDIGIEREDTVVDTVGMA 578

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                  +    D  +      +   HR+   A   + +    +I+M V     N     
Sbjct: 579 RFLLPQLNRFKLDTVAKAVGVSLEHHHRAVDDASCTADIFVK-FIEMCVERDIFNLDELN 637

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
            +        + +P    +   K    R+ 
Sbjct: 638 EKGTVSVHSIQKMPTYHAIILAKNDVGRVN 667


>gi|227498668|ref|ZP_03928812.1| DNA polymerase III [Acidaminococcus sp. D21]
 gi|226904124|gb|EEH90042.1| DNA polymerase III [Acidaminococcus sp. D21]
          Length = 225

 Score = 80.0 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 74/175 (42%), Gaps = 7/175 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITD 67
            +V DIETTGLD     IIEIGAV + + + + R FQ FL P   +  SP    L GITD
Sbjct: 57  YVVIDIETTGLDVARSAIIEIGAVHVRNGAVSGR-FQTFLTPEPYQSLSPFITNLTGITD 115

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L   P+F  I     DF        + HN  FD+ F+   + R   + L+   +    
Sbjct: 116 SDLVGAPTFREILPRLRDFLGG--YTLVGHNVNFDINFLYDRIYRETGEHLNNPYLDTKK 173

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
                    S   L +LCK +G      + H A+ D  L   V   +    +Q  
Sbjct: 174 LAKTVVPGLSHYSLEALCKHFG---IAGNHHRAVDDCELTEKVLDALWRLKTQQG 225


>gi|222099063|ref|YP_002533631.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
 gi|221571453|gb|ACM22265.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
          Length = 1367

 Score = 80.0 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 95/194 (48%), Gaps = 7/194 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD ETTGLD + D IIEIGAV++ +    +  +   + P+G   S ++ ++ GIT E
Sbjct: 360 FVVFDFETTGLDPQVDEIIEIGAVKIKEGRIIDE-YHTLIKPSG-TISRKSAEITGITQE 417

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+ + +   +  EF +F  +  +  +AHNA FD  F+   ++++          +DTL+
Sbjct: 418 MLEGERAIEEVLPEFLEFLED--SILVAHNANFDYRFLRLWIKKVLGKD-WEKPYVDTLA 474

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +A+         L+S+ K+ G+       H AL D+ + + V+++ +    +I     + 
Sbjct: 475 LAKSLLRLKSYSLDSVVKKLGLG--SFRHHRALDDARVTAQVFLRFIEMMKKIGITKLSE 532

Query: 189 EDRFFKEEKKTVPN 202
            ++       T   
Sbjct: 533 MEKLKDSVDFTAQK 546


>gi|256544693|ref|ZP_05472065.1| Gram-positive family DNA polymerase III, alpha subunit
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399582|gb|EEU13187.1| Gram-positive family DNA polymerase III, alpha subunit
           [Anaerococcus vaginalis ATCC 51170]
          Length = 1398

 Score = 80.0 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 7/189 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R IVFD+ETTGL    D+I EIGAV++ +       F   + P  +    + ++L GIT+
Sbjct: 383 RFIVFDLETTGLSKYIDKITEIGAVKIENGEII-EVFNELVNPE-KMIPQKVVELTGITN 440

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + DKP    +  +F +    +++ ++  N  FD+GFI       N         +DTL
Sbjct: 441 EMVMDKPKIDEVLPKFLE--FSKDSYFVGQNTDFDIGFIK--EACDNLSYKFEPIYLDTL 496

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            +AR   P+          +  + +   + H A  D+   + ++IK+       N     
Sbjct: 497 PMARAVFPTMGRFSLDKLAKK-LGVGPFNHHRASDDAMTTAKIFIKLFEKIKDKNKDLSL 555

Query: 188 NEDRFFKEE 196
            +    K +
Sbjct: 556 EKINSIKTK 564


>gi|299534745|ref|ZP_07048075.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
 gi|298729833|gb|EFI70378.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
          Length = 1443

 Score = 80.0 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 6/175 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++ D    ++ ++ F  P+    S   ++L GITD+
Sbjct: 428 YVVFDVETTGLSTAYDTIIELAAVKIKDGQVIDK-YESFANPH-HPLSATTIELTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P    +  EF  F  +  A  +AHNA FD+GF+    ++   +      I     
Sbjct: 486 MVRNAPEVEQVIKEFHAFIGD--AIVVAHNASFDIGFLYTGYKKFGLEDTVHPVIDTLEL 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     + LN+LCK++ I       H A+ D+     + ++++    ++  
Sbjct: 544 ARLLYPTMKNHRLNTLCKKFNIE--LTQHHRAIYDTEATGYLLLQLLKDADELAI 596


>gi|169342745|ref|ZP_02863785.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens C str. JGS1495]
 gi|169299251|gb|EDS81321.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens C str. JGS1495]
          Length = 1449

 Score = 79.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 6/221 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  SKND+IIEIGAV+L D      +F  F+ P       +  +L  IT  
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIV-DSFSTFVDPKVN-IPYKITELTSITQN 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127
            +  +P+   +  +F +F  +  +  +AHNA FDVGFI    +             +   
Sbjct: 493 MVNGQPTIDEVLPKFMEFVGD--SVLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLA 550

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-FK 186
                     + +L +      +   HR+   A   + +L   + KM       +     
Sbjct: 551 RYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEMDIHDVKTLN 610

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
                    +K  + +I +L +++     + K     H   
Sbjct: 611 EKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLVSMAHLDY 651


>gi|168216978|ref|ZP_02642603.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens NCTC 8239]
 gi|182380934|gb|EDT78413.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens NCTC 8239]
          Length = 1449

 Score = 79.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 6/221 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  SKND+IIEIGAV+L D      +F  F+ P       +  +L  IT  
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIV-DSFSTFVDPKVN-IPYKITELTSITQN 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127
            +  +P+   +  +F +F  +  +  +AHNA FDVGFI    +             +   
Sbjct: 493 MVNGQPTIDEVLPKFMEFVGD--SVLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLA 550

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-FK 186
                     + +L +      +   HR+   A   + +L   + KM       +     
Sbjct: 551 RYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEMDIHDVKTLN 610

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
                    +K  + +I +L +++     + K     H   
Sbjct: 611 EKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLVSMAHLDY 651


>gi|229149839|ref|ZP_04278067.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1550]
 gi|228633520|gb|EEK90121.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1550]
          Length = 934

 Score = 79.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--NQPHRADSDALATAELFLQFLNEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            T +  +   +        +L  +        KE++ E++
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215


>gi|110799061|ref|YP_696378.1| DNA polymerase III PolC [Clostridium perfringens ATCC 13124]
 gi|168211421|ref|ZP_02637046.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens B str. ATCC 3626]
 gi|110673708|gb|ABG82695.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens ATCC 13124]
 gi|170710571|gb|EDT22753.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens B str. ATCC 3626]
          Length = 1449

 Score = 79.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 6/221 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  SKND+IIEIGAV+L D      +F  F+ P       +  +L  IT  
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIV-DSFSTFVDPKVN-IPYKITELTSITQN 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127
            +  +P+   +  +F +F  +  +  +AHNA FDVGFI    +             +   
Sbjct: 493 MVNGQPTIDEVLPKFMEFVGD--SVLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLA 550

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-FK 186
                     + +L +      +   HR+   A   + +L   + KM       +     
Sbjct: 551 RYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEMDIHDVKTLN 610

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
                    +K  + +I +L +++     + K     H   
Sbjct: 611 EKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLVSMAHLDY 651


>gi|229109097|ref|ZP_04238697.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-15]
 gi|228674375|gb|EEL29619.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-15]
          Length = 934

 Score = 79.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 88/220 (40%), Gaps = 10/220 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL+++    +   +I  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQVGYTEIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            T +  +   +        +L  +        KE++ E++
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215


>gi|229144240|ref|ZP_04272654.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST24]
 gi|228639248|gb|EEK95664.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST24]
          Length = 934

 Score = 79.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            T +  +   +        +L  +        KE++ E++
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215


>gi|222529790|ref|YP_002573672.1| DNA polymerase III subunit alpha [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456637|gb|ACM60899.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM
           6725]
          Length = 1402

 Score = 79.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG DS+ DRIIEIGAV++ +   T R F  F+ P G+       +L GI  +
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITER-FSTFVDPEGK-IPVRISELTGIYQD 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  S    EF        +  +AHNA+FD+GF+    Q               LS
Sbjct: 448 MVDKAPKLSDAILEFEK--FASGSVLVAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELS 505

Query: 129 IARRKHPSSRNDLN-SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                  SS      +      +   HR+   A   + +   +  ++   G +      +
Sbjct: 506 RRLLTDLSSHKLNKVAEFLNIELKHHHRADSDAETTAGIFISLVERLKARGYKWLKELNS 565

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
            E     + K    + ++L +++     + K     H + 
Sbjct: 566 IESNAKADLKSHSYHATILVKNQQGLKNLYKLVSYSHLEY 605


>gi|206970727|ref|ZP_03231679.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH1134]
 gi|229078824|ref|ZP_04211377.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock4-2]
 gi|229178049|ref|ZP_04305421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           172560W]
 gi|206734363|gb|EDZ51533.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH1134]
 gi|228605537|gb|EEK62986.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           172560W]
 gi|228704506|gb|EEL56939.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock4-2]
          Length = 934

 Score = 79.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            T +  +   +        +L  +        KE++ E++
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215


>gi|228952021|ref|ZP_04114116.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228957917|ref|ZP_04119657.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228801833|gb|EEM48710.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228807553|gb|EEM54077.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 934

 Score = 79.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            T +  +   +        +L  +        KE++ E++
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215


>gi|218896571|ref|YP_002444982.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus G9842]
 gi|218545327|gb|ACK97721.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus G9842]
          Length = 934

 Score = 79.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            T +  +   +        +L  +        KE++ E++
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215


>gi|310830408|ref|YP_003965509.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2]
 gi|309249875|gb|ADO59441.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2]
          Length = 311

 Score = 79.6 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 15/184 (8%)

Query: 7   MRKIVF--------DIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           M +I+         DIETTG    K  RIIE+  V++ +    +  F   + P  +    
Sbjct: 16  MNEIILRSNLYVVADIETTGFSPAKGGRIIEVAGVKIENGKIVDE-FNQLINPEQKIYP- 73

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  +L GIT+E +  KP F  +  EF+ F  +  A ++AHN  FD               
Sbjct: 74  KITELTGITNEMVSGKPVFGQVLPEFYRFIGD--AVFVAHNKSFDWDRYLLHYFEKVGII 131

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D + I   +     +       L  +CK  G+ I   + H AL DS  L+ V+++ +  
Sbjct: 132 ADNASICTKILAKMYRPNLPAYGLEDICKDAGVQI--TNHHRALDDSIALAHVFLRYLNT 189

Query: 178 GSQI 181
            + +
Sbjct: 190 YAPL 193


>gi|296502210|ref|YP_003663910.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171]
 gi|296323262|gb|ADH06190.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171]
          Length = 934

 Score = 79.6 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            T +  +   +        +L  +        KE++ E++
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215


>gi|229189723|ref|ZP_04316737.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           10876]
 gi|228593772|gb|EEK51577.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           10876]
          Length = 934

 Score = 79.6 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            T +  +   +        +L  +        KE++ E++
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215


>gi|229126955|ref|ZP_04255966.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-Cer4]
 gi|228656555|gb|EEL12382.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-Cer4]
          Length = 934

 Score = 79.6 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            T +  +   +        +L  +        KE++ E++
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215


>gi|218230901|ref|YP_002366323.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus B4264]
 gi|228907275|ref|ZP_04071134.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 200]
 gi|229069194|ref|ZP_04202485.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           F65185]
 gi|218158858|gb|ACK58850.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus B4264]
 gi|228713946|gb|EEL65830.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           F65185]
 gi|228852329|gb|EEM97124.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 200]
          Length = 934

 Score = 79.6 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            T +  +   +        +L  +        KE++ E++
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215


>gi|18310673|ref|NP_562607.1| DNA polymerase III PolC [Clostridium perfringens str. 13]
 gi|168214476|ref|ZP_02640101.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens CPE str. F4969]
 gi|24418366|sp|Q8XJR3|DPO3_CLOPE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|18145354|dbj|BAB81397.1| DNA polymerase III alpha subunit [Clostridium perfringens str. 13]
 gi|170714031|gb|EDT26213.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens CPE str. F4969]
          Length = 1449

 Score = 79.6 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 87/221 (39%), Gaps = 6/221 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  SKND+IIEIGAV+L D      +F  F+ P       +  +L  IT  
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIV-DSFSTFVDPKVN-IPYKITELTSITQN 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127
            +  +P+   +  +F +F    N+  +AHNA FDVGFI    +             +   
Sbjct: 493 MVNGQPTIDEVLPKFMEFV--GNSVLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLA 550

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-FK 186
                     + +L +      +   HR+   A   + +L   + KM       +     
Sbjct: 551 RYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEMDIHDVKTLN 610

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
                    +K  + +I +L +++     + K     H   
Sbjct: 611 EKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLVSMAHLDY 651


>gi|125973511|ref|YP_001037421.1| DNA polymerase III PolC [Clostridium thermocellum ATCC 27405]
 gi|125713736|gb|ABN52228.1| DNA polymerase III catalytic subunit, PolC type [Clostridium
           thermocellum ATCC 27405]
          Length = 1442

 Score = 79.6 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 7/186 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL +  D+I EIGAV++ +      TF  F+ P         +KL GITD+
Sbjct: 429 FVVFDIETTGLSADKDKITEIGAVKIKEGKIV-DTFSTFVNPE-IPIPEFVVKLTGITDD 486

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +  EF +F     +  +AHNA FD GFI    + IN++    + +IDTL 
Sbjct: 487 MVSDAPTIDKVLPEFLEFVGT--SPLVAHNAVFDTGFIRHNARLINRN--VDNPVIDTLE 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           ++R+  P  +     +  ++ + +S  + H AL D+    +++IK +   ++ N     +
Sbjct: 543 LSRQMFPELKKHKLDVVAKH-LGVSLENHHRALDDAKACGEIFIKCLEILAEKNVKTIDD 601

Query: 189 EDRFFK 194
               F+
Sbjct: 602 IQNVFE 607


>gi|168208108|ref|ZP_02634113.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens E str. JGS1987]
 gi|170660599|gb|EDT13282.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens E str. JGS1987]
          Length = 1449

 Score = 79.6 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 6/221 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  SKND+IIEIGAV+L D      +F  F+ P       +  +L  IT  
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIV-DSFSTFVDPKVN-IPYKITELTSITQN 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127
            +  +P+   +  +F +F  +  +  +AHNA FDVGFI    +             +   
Sbjct: 493 MVNGQPTIDEVLPKFMEFVGD--SVLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLA 550

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-FK 186
                     + +L +      +   HR+   A   + +L   + KM       +     
Sbjct: 551 RYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEMDIHDVKTLN 610

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
                    +K  + +I +L +++     + K     H   
Sbjct: 611 EKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLVSMAHLDY 651


>gi|75760399|ref|ZP_00740443.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492110|gb|EAO55282.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 934

 Score = 79.6 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            T +  +   +        +L  +        KE++ E++
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215


>gi|228996755|ref|ZP_04156392.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
           Rock3-17]
 gi|228763074|gb|EEM11984.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
           Rock3-17]
          Length = 930

 Score = 79.6 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   DRI +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDRITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +          AHN  FD  F+  EL++     ++  +I  
Sbjct: 62  DENLVKQAPLFCDVAPMVAELLQGAYFI--AHNVHFDWNFLKEELKQAGYGEVNCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+ + ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALVTAELFLQFLNQLEKLPL 175


>gi|228900222|ref|ZP_04064453.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 4222]
 gi|228859391|gb|EEN03820.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 4222]
          Length = 934

 Score = 79.6 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            T +  +   +        +L  +        KE++ E++
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215


>gi|119387836|ref|YP_918870.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119378411|gb|ABL73174.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 706

 Score = 79.6 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 8/167 (4%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGL+  + D II+IGA+ +L+        F   + P GR+  PE++  HGI  E
Sbjct: 518 VFDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDP-GREIPPESIPYHGIHPE 576

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ +P  + +   F       +   + HN  FD+ F+  +          P      L+
Sbjct: 577 MVQGQPRIAEVLPAFHA--YASDTVLVGHNVAFDMRFLQLKEAATGLRFDQPVLDTLLLA 634

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              + H    + L ++  R G+ I    +H AL D+ + ++V+++++
Sbjct: 635 SIAQPH-EPSHSLEAIAARLGVEI--TQRHNALSDALVTAEVFLRLL 678


>gi|256003329|ref|ZP_05428320.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
           2360]
 gi|281417714|ref|ZP_06248734.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|255992619|gb|EEU02710.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
           2360]
 gi|281409116|gb|EFB39374.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|316940249|gb|ADU74283.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
           1313]
          Length = 1442

 Score = 79.6 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 7/186 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL +  D+I EIGAV++ +      TF  F+ P         +KL GITD+
Sbjct: 429 FVVFDIETTGLSADKDKITEIGAVKIKEGKIV-DTFSTFVNPE-IPIPEFVVKLTGITDD 486

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +  EF +F     +  +AHNA FD GFI    + IN++    + +IDTL 
Sbjct: 487 MVSDAPTIDKVLPEFLEFVGT--SPLVAHNAVFDTGFIRHNARLINRN--VDNPVIDTLE 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           ++R+  P  +     +  ++ + +S  + H AL D+    +++IK +   ++ N     +
Sbjct: 543 LSRQMFPELKKHKLDVVAKH-LGVSLENHHRALDDAKACGEIFIKCLEILAEKNVKTIDD 601

Query: 189 EDRFFK 194
               F+
Sbjct: 602 IQNVFE 607


>gi|145580424|pdb|2P1J|A Chain A, Crystal Structure Of A Polc-Type Dna Polymerase Iii
           Exonuclease Domain From Thermotoga Maritima
 gi|145580425|pdb|2P1J|B Chain B, Crystal Structure Of A Polc-Type Dna Polymerase Iii
           Exonuclease Domain From Thermotoga Maritima
          Length = 186

 Score = 79.6 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 7/172 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGLD + D IIEIGAV++      +  +   + P  R+ S ++ ++ GIT E
Sbjct: 14  FVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDE-YHTLIKP-SREISRKSSEITGITQE 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++K S   +  EF  F  +  +  +AHNA FD  F+   ++++          IDTL+
Sbjct: 72  MLENKRSIEEVLPEFLGFLED--SIIVAHNANFDYRFLRLWIKKVMGLD-WERPYIDTLA 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +A+         L+S+ ++ G+       H AL D+ + + V+++ +    +
Sbjct: 129 LAKSLLKLRSYSLDSVVEKLGLG--PFRHHRALDDARVTAQVFLRFVEMMKK 178


>gi|110801936|ref|YP_698978.1| DNA polymerase III PolC [Clostridium perfringens SM101]
 gi|110682437|gb|ABG85807.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens SM101]
          Length = 1449

 Score = 79.6 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 87/221 (39%), Gaps = 6/221 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  SKND+IIEIGAV+L D      +F  F+ P       +  +L  IT  
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIV-DSFSTFVDPKVN-IPYKITELTSITQN 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127
            +  +P+   +  +F +F    N+  +AHNA FDVGFI    +             +   
Sbjct: 493 MVNGQPTIDEVLPKFMEFV--GNSVLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLA 550

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-FK 186
                     + +L +      +   HR+   A   + +L   + KM       +     
Sbjct: 551 RYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEMDIHDVKTLN 610

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
                    +K  + +I +L +++     + K     H   
Sbjct: 611 EKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLVSMAHLDY 651


>gi|319892281|ref|YP_004149156.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161977|gb|ADV05520.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 1435

 Score = 79.6 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 100/208 (48%), Gaps = 13/208 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ +        L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVKNGEIIDK-FERFSNPHEKLT-ETIKNLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD P    + +EF  +  +  A ++AHNA FD+GFI+   +R+   P   + I     
Sbjct: 478 MLKDAPEIEEVLTEFKAWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNAVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + +++KM+          K  
Sbjct: 536 SRTINTSYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFVKMLAQ-------LKAL 586

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           +    ++  K + N    KR +P    +
Sbjct: 587 DVHNHQDINKKLSNEDAYKRARPQHVTL 614


>gi|229818165|ref|ZP_04448447.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM
           20098]
 gi|229784416|gb|EEP20530.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM
           20098]
          Length = 186

 Score = 79.6 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 5/166 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG+    DRIIEIGAV +   + T   +   + P GR        L GI+DE
Sbjct: 19  YVVVDLETTGISPARDRIIEIGAVRVEHGTVTAE-YSKLVNP-GRPVGGFITGLTGISDE 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +     ++  +F       +   +AHNA FD+ F+     R    P     I     
Sbjct: 77  MVGNASPIEAVLPDFLAHLRPSDTI-VAHNANFDINFLYDNCMRTLGKPFSYDFIDTLRL 135

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                    ++ L  L +R+GI      +H  L D+    + Y +M
Sbjct: 136 SRALFPQERQHRLVDLIQRFGIA--DEEEHRGLSDALQTVECYERM 179


>gi|154502558|ref|ZP_02039618.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149]
 gi|153796750|gb|EDN79170.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149]
          Length = 1503

 Score = 79.6 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 86/196 (43%), Gaps = 7/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTG  +  D+IIEIGAV++ D +   + F  F+ P  R    E  +L  ITDE
Sbjct: 467 YIVFDIETTGFSAIKDKIIEIGAVKVKDGAIVEK-FSTFVNPK-RPIPFEITQLTSITDE 524

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   S+  EF +F  +     +AHNA FDVGFI    +    +P   S     L+
Sbjct: 525 MVLDAPDIESVLPEFLEFVGD--GVLVAHNAGFDVGFIEQNCRYQEIEPDFVSVDTVALA 582

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  S             + IS  + H A+ D+   +++++K +      N      
Sbjct: 583 RVLLPTLSKYKLNIVAKA---LGISLENHHRAVDDAGATAEIFVKFVEMLKDRNITTLKE 639

Query: 189 EDRFFKEEKKTVPNIS 204
            +RF       +  + 
Sbjct: 640 MNRFGDMNVNAIRKLP 655


>gi|317500099|ref|ZP_07958334.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898584|gb|EFV20620.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 1520

 Score = 79.6 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 7/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTG  S  D IIE+GAV++ D   T+R F  F+ P  R    E   L  ITDE
Sbjct: 483 YIVFDIETTGFSSIKDAIIEVGAVKVTDGKITDR-FSTFVNPK-RPIPFEITNLTSITDE 540

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +  +F +     +   +AHNA FDVGFI    + +             L+
Sbjct: 541 MVMDSPTIDVVLPQFLE--FAGDGVLVAHNAGFDVGFIEQNCRSLGLSDEFVYLDTVALA 598

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  S             + IS  + H A+ D+   +++++K      +   G    
Sbjct: 599 RVLLPTLSKYKLNIVAKA---LNISLENHHRAVDDAEATAEIFVKFTEMLKKDQVGTLKE 655

Query: 189 EDRFFKEEKKTVPNIS 204
            +R+       +  + 
Sbjct: 656 VNRYGDRNVNAIRKMP 671


>gi|218680719|ref|ZP_03528616.1| DNA polymerase III subunit epsilon [Rhizobium etli CIAT 894]
          Length = 186

 Score = 79.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 76/151 (50%), Positives = 100/151 (66%), Gaps = 5/151 (3%)

Query: 94  WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS 153
           WIAHNA FD+GFINAEL RI   P+ P R++DTLS+ARRKHP   N L++LC+RYGI  S
Sbjct: 31  WIAHNATFDMGFINAELARIGLPPILPERVVDTLSMARRKHPMGPNSLDALCRRYGIDNS 90

Query: 154 HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN----EDRFFKEEKKTVPNISLLKRD 209
           HR+KHGALLDS LL++VYI+M+  G Q  FG  T       R    E+  V   S+L+R 
Sbjct: 91  HRTKHGALLDSELLAEVYIEMIG-GRQAAFGLSTATSGQNGRGDMAEEDDVVIASVLERP 149

Query: 210 KPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           +PL  R+++ E   H+  +  LG+  IW +Y
Sbjct: 150 RPLAPRLSQSEAQAHEALVAKLGEKGIWAKY 180


>gi|325660790|ref|ZP_08149418.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325472864|gb|EGC76074.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 1492

 Score = 79.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 7/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  +  DRIIEIGAV++ D +  +R F  F+ P       E  +L  ITD+
Sbjct: 463 FVVFDIETTGFSAAEDRIIEIGAVKITDGAIVDR-FSTFVNPE-VPIPFEIQQLTHITDD 520

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P        F DF  E  +  +AHNA FDVGFI     R+ +     S     L+
Sbjct: 521 MVLEAPKIEEALPAFLDFVGE--SALVAHNAGFDVGFIEQNCVRLGRSRTFTSVDTVGLA 578

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  S             + IS  + H A+ D+   +++Y+K +    +        
Sbjct: 579 RVLLPTLSKYKLN---IVAKALNISLENHHRAVDDAAATAEIYVKFIEMLKERGMTTLKE 635

Query: 189 EDRFFKEEKKTVPNIS 204
            + F       +  + 
Sbjct: 636 VNAFGDMNPDAIKKMP 651


>gi|258511479|ref|YP_003184913.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478205|gb|ACV58524.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 240

 Score = 79.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 13/231 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D ETTGL  +  R++E+  VE+    +    +   + P G    PEA  +H ITD
Sbjct: 7   RFVVVDTETTGLPPEG-RVVELALVEVGLECEPQIVYSALVDP-GCPIPPEASAVHHITD 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +  KP  S ++ +   +  +  A  +AHNA+FD G +    +                
Sbjct: 65  RDVAGKPRLSQVWPKVLGYIGD--AILVAHNAEFDRGMLPETGRPWICS---------KR 113

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                   + ++    L    GI +     H AL D+ + + V+ + +    +  +    
Sbjct: 114 LAQHLWRDAPKHSNQVLRYWLGIDVEVGQPHRALGDAIVTAHVFQRELRAYLEAGYPDDV 173

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           +E   F E    V  +   K        +  + LD   + +Q L  +  W 
Sbjct: 174 DELIAFAESPIEVQTMPFGKHKGMPLKEVPLDYLDWALRNLQDLSPDLRWS 224


>gi|331087674|ref|ZP_08336601.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330410366|gb|EGG89799.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 1520

 Score = 79.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 7/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTG  S  D IIE+GAV++ D   T+R F  F+ P  R    E   L  ITDE
Sbjct: 483 YIVFDIETTGFSSIKDAIIEVGAVKVTDGKITDR-FSTFVNPK-RPIPFEITNLTSITDE 540

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +  +F +     +   +AHNA FDVGFI    + +             L+
Sbjct: 541 MVMDSPTIDVVLPQFLE--FAGDGVLVAHNAGFDVGFIEQNCRSLGLSDEFVYLDTVALA 598

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  S             + IS  + H A+ D+   +++++K      +   G    
Sbjct: 599 RVLLPTLSKYKLNIVAKA---LNISLENHHRAVDDAEATAEIFVKFTEMLKKDQVGTLKE 655

Query: 189 EDRFFKEEKKTVPNIS 204
            +R+       +  + 
Sbjct: 656 VNRYGDRNVNAIRKMP 671


>gi|228920352|ref|ZP_04083698.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228839274|gb|EEM84569.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 934

 Score = 79.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            T +  +   +        +L  +        KE++ E++
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215


>gi|323464622|gb|ADX76775.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus pseudintermedius ED99]
          Length = 1435

 Score = 79.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 100/208 (48%), Gaps = 13/208 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ +        L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVKNGEIIDK-FERFSNPHEKLT-ETIKNLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD P    + +EF  +  +  A ++AHNA FD+GFI+   +R+   P   + I     
Sbjct: 478 MLKDAPEIEEVLTEFKAWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSANAVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    ++ LN L K+YG+       H A+ D+   + +++KM+          K  
Sbjct: 536 SRTINTSYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFVKMLAQ-------LKAL 586

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           +    ++  K + N    KR +P    +
Sbjct: 587 DVHNHQDINKKLSNEDAYKRARPQHVTL 614


>gi|253579638|ref|ZP_04856907.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849139|gb|EES77100.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1489

 Score = 79.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 12/225 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFDIETTG  S   +IIEIGAV + +   T+R F  F+ P          +L  I D
Sbjct: 461 RFVVFDIETTGFSSLTCQIIEIGAVLVENGEITDR-FSTFVNPK-VPIPFRIEQLTSIND 518

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P+   +  +F +    ++A  +AHNA FD+GFI     R+             +
Sbjct: 519 SMVMDAPTIEEVLPKFLE--FSKDAVMVAHNADFDMGFIMKNCDRLGIAHDFTYVDTVGM 576

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +        +R  L+++ K  G++    + H A+ D+   +++++K +    + +     
Sbjct: 577 ARFLLPA-LNRFKLDTVAKAVGVS--LENHHRAVDDAACTAEIFVKFVKMLEERDIRDVD 633

Query: 188 NEDRFFKEEKKTVPNIS-----LLKRDKPLFTRITKEELDEHDKT 227
             +        T+  +      +  R++     + K     H K 
Sbjct: 634 MLNEQGAVSVNTIRKLPTYHVIIFARNETGRINLYKLVSQSHLKY 678


>gi|225163449|ref|ZP_03725765.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
 gi|224801949|gb|EEG20229.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
          Length = 197

 Score = 79.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 5/175 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  ++FD+ETTG   + + II+I AV L+D   ++ TF  ++ P  R       +L GIT
Sbjct: 1   MNLVIFDLETTGFSPRWNDIIQIAAVRLVDGRISDETFSTYVSP-RRPVPDHITELTGIT 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           D  + D P  S     F  F  +      +AHN         AE   ++  P+ P R ID
Sbjct: 60  DADVADAPETSDALRAFARFVGDVGPTTLVAHNGHRFDMRFIAESCTLHGLPMRPIRFID 119

Query: 126 TLSIARRKHPSSRNDLNSL---CKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           ++ ++++  P+       +          I+   +H A  D HLL++   +M+  
Sbjct: 120 SIWLSKKLWPAESLHNLDVIVERLGIETGITGHRRHDARADVHLLANAVRRMIQN 174


>gi|331085480|ref|ZP_08334565.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330407718|gb|EGG87216.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 1492

 Score = 79.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 7/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  +  DRIIEIGAV++ D +  +R F  F+ P       E  +L  ITD+
Sbjct: 463 FVVFDIETTGFSAAEDRIIEIGAVKITDGAIVDR-FSTFVNPE-VPIPFEIQQLTHITDD 520

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P        F DF  E  +  +AHNA FDVGFI     R+ +     S     L+
Sbjct: 521 MVLEAPKIEEALPAFLDFVGE--SALVAHNAGFDVGFIEQNCVRLGRSRTFTSVDTVGLA 578

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  S             + IS  + H A+ D+   +++Y+K +    +        
Sbjct: 579 RVLLPTLSKYKLN---IVAKALNISLENHHRAVDDAAATAEIYVKFIEMLKERGMTTLKE 635

Query: 189 EDRFFKEEKKTVPNIS 204
            + F       +  + 
Sbjct: 636 VNAFGDMNPDAIKKMP 651


>gi|237734614|ref|ZP_04565095.1| DNA-directed DNA polymerase [Mollicutes bacterium D7]
 gi|229382434|gb|EEO32525.1| DNA-directed DNA polymerase [Coprobacillus sp. D7]
          Length = 1440

 Score = 79.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 4/174 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL   +D I E GAV++ +    +R  Q+F+ P G+  S     L  IT++
Sbjct: 403 YVSFDLETTGLSVIHDGITEFGAVKIKNGEVIDR-LQMFVNP-GKSISSRITNLTSITND 460

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++++P+  ++     +FF++     +AHNA FD+GF+N  L+R N   +    I     
Sbjct: 461 MVRNEPTIDALLPRIIEFFDD--CILVAHNANFDIGFLNENLRRNNMPEITNPIIDSLAL 518

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
                 P     L ++C+ Y +       H A  D+ +L DV+  M+    Q  
Sbjct: 519 ARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAEVLGDVFNMMLHQIMQSG 572


>gi|228990657|ref|ZP_04150622.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           pseudomycoides DSM 12442]
 gi|228769183|gb|EEM17781.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           pseudomycoides DSM 12442]
          Length = 930

 Score = 79.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   DRI +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDRITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +          AHN  FD  F+  EL++     ++  +I  
Sbjct: 62  DENLVKQAPLFCDVAPMVAELLQGAYFV--AHNVHFDWNFLKEELKQAGYGEVNCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+ + ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALVTAELFLQFLNQLEKLPL 175


>gi|262037779|ref|ZP_06011221.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
           goodfellowii F0264]
 gi|261748251|gb|EEY35648.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
           goodfellowii F0264]
          Length = 1438

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 4/201 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGLD   D+IIEIGA++L      +  F VF+ P       E   L  IT++
Sbjct: 412 YVVFDIETTGLDPYKDKIIEIGAIKLKGKEIIDE-FSVFINPE-IDIPEEITALTNITND 469

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD     ++  +F +F  +      AHNAKFDVGFIN + + +  +           +
Sbjct: 470 MVKDAEKVETVLPKFLEFCKDTTVV--AHNAKFDVGFINQKAKNLGLEYSPSVIDTLHWA 527

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                                +  +H         +  +   ++ M++    +       
Sbjct: 528 RILLPEQKRFGLKYIANYFNVVLDNHHRAVDDAKATAEIFQKFLNMVLSRGVLKLSEINQ 587

Query: 189 EDRFFKEEKKTVPNISLLKRD 209
           E +   +   T+  + L+K  
Sbjct: 588 ELQTNIQNADTLNTMILVKNQ 608


>gi|227890631|ref|ZP_04008436.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
 gi|227867569|gb|EEJ74990.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
          Length = 1451

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 6/189 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD ETTGL ++ D++IE+ AV++   +    TF+ F+ P    +      ++  +  
Sbjct: 433 YVIFDTETTGLSAQYDKVIELAAVKMEKGNVI-DTFEEFIDPG---HPLSQTTINLTSIT 488

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            ++   + HNA FDV F+N   +R N + +    I     
Sbjct: 489 DDMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPWIDTLPL 548

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       LN+L K+  I + H   H A+ D+     +Y  M+    +    +  +
Sbjct: 549 ARYLYPEMKGFRLNTLAKKLNIKLEH--HHRAIYDAEATGFIYYAMLKDAEEKQILYHDD 606

Query: 189 EDRFFKEEK 197
            ++   E  
Sbjct: 607 FNKHVGEND 615


>gi|110598328|ref|ZP_01386602.1| DNA polymerase III, epsilon subunit [Chlorobium ferrooxidans DSM
           13031]
 gi|110340026|gb|EAT58527.1| DNA polymerase III, epsilon subunit [Chlorobium ferrooxidans DSM
           13031]
          Length = 219

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 7/172 (4%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV L +     R FQ  + P G + S       GIT+E
Sbjct: 10  VVLDFETTGLSPEYGDRAIEIGAVLLEEGEIVGR-FQKLMNP-GFRISQFIEGYTGITNE 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK +P    + +EF +F   +N    AHNA FD  F++ EL+R  +   + S     L 
Sbjct: 68  MLKGQPCCEEVMAEFSEFIAGRNIV--AHNAAFDRRFLDFELKRAKRAY-EGSCCCSLLV 124

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             R    S  + L +L    GI       H AL D+ + + +++ M+    +
Sbjct: 125 SRRIYQDSPNHRLQTLVSHAGIR-QTGVFHRALADAEMTAQLWLSMIERIRR 175


>gi|148244527|ref|YP_001219221.1| DNA polymerase III epsilon subunit [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326354|dbj|BAF61497.1| DNA polymerase III epsilon subunit [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 223

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 7/226 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGI 65
           R IV D ETTG+   +  RIIEIG +E++D   T    +  ++ PN       ++++HGI
Sbjct: 3   RLIVLDTETTGIKPSEGHRIIEIGCIEIIDRQITKNNKYHEYIQPNRNVGD--SVRIHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+FL  KP F  +  EF  +  E                   +L  IN+   D   IID
Sbjct: 61  TDKFLTKKPKFKEVVEEFLAYIKETTLIIHNAPFDLGFLNHELKLIGINERIEDKCTIID 120

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L +++++ P + ++L+SLC+R+ I  S R+ HGALLD  +L+ VY+ M  G S +    
Sbjct: 121 SLELSKQQRPGTLHNLDSLCRRFKIDSSARTVHGALLDVQILAQVYLAMTGGQSTLFSND 180

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           KT  ++          N ++ K          K+EL  H    + L
Sbjct: 181 KTINEQDNNTNNIVRINNAIGK---IKIVYANKKELAAHADYFKKL 223


>gi|225568406|ref|ZP_03777431.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM
           15053]
 gi|225162634|gb|EEG75253.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM
           15053]
          Length = 1487

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 92/241 (38%), Gaps = 30/241 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  S  D+IIEIGAV++     T   F  F+ P          +L GITD+
Sbjct: 448 FVVFDLETTGFSSIKDKIIEIGAVKVEGGRIT-EKFSTFVDPK-IPIPFRITQLTGITDQ 505

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   +    F +     +A  +AHNA FDVGFI+   + ++  P   +     +S
Sbjct: 506 MVMDAPEIEAALPAFLE--FAGDAALVAHNAGFDVGFIDQNCRYMDITPDFTAVDTVAMS 563

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  S             + IS  + H A+ D+   ++++++ +    +        
Sbjct: 564 RILLPTLSKFKLNVVAKA---LNISLENHHRAVDDAGATAEIFVRFVDMLKERGIHTLAR 620

Query: 189 EDRFFKEEKKTVPNISLL------KRDKPLF-----------------TRITKEELDEHD 225
            ++F       +  +         K +                      RI K EL  H 
Sbjct: 621 LNQFGSSNANAIRKLPSFHVIILAKNETGRVNLYKLISKSHLDYFGRQPRIPKSELSRHR 680

Query: 226 K 226
           +
Sbjct: 681 E 681


>gi|167756906|ref|ZP_02429033.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402]
 gi|167703081|gb|EDS17660.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402]
          Length = 1445

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 4/174 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL   +D I E GAV++ +    +R  Q+F+ P G+  S     L  IT++
Sbjct: 408 YVSFDLETTGLSVIHDGITEFGAVKIKNGEVIDR-LQMFVNP-GKSISSRITNLTSITND 465

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++++P+  ++     +FF++     +AHNA FD+GF+N  L+R N   +    I     
Sbjct: 466 MVRNEPTIDALLPRIIEFFDD--CILVAHNANFDIGFLNENLRRNNMPEITNPIIDSLAL 523

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
                 P     L ++C+ Y +       H A  D+ +L DV+  M+    Q  
Sbjct: 524 ARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAEVLGDVFNMMLHQIMQSG 577


>gi|237756693|ref|ZP_04585197.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691145|gb|EEP60249.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 205

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 5/196 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL+ K   IIEI A+++     T   F   + P+         KL GIT+  +
Sbjct: 13  VVDLETTGLNPKTSEIIEIAAIKVEGNVIT-EKFHTLVKPSIGFIPEHITKLTGITNPLV 71

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +F  F +    +N+  IAHNAKFD+ F+N    ++    +    I   +   
Sbjct: 72  IDKPKIEQVFPHFLE--FTKNSIIIAHNAKFDISFLNEASFQLTGKLIQNPVICTLVLAN 129

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R         L +L   + I    +  H AL D+ +  +++ K +            +  
Sbjct: 130 RLFPDLKSKSLTNLAYHFNIPYHRK--HRALADAEVTYELFKKFVEYLQNYKVNKVIDLI 187

Query: 191 RFFKEEKKTVPNISLL 206
           R    +   +P+    
Sbjct: 188 RLSNGKDLKLPSKRRR 203


>gi|312127164|ref|YP_003992038.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777183|gb|ADQ06669.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 1402

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG DS+ DRIIEIGAV++ +   T + F  F+ P G+       +L GI  +
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITEK-FSTFVDPEGK-IPVRISELTGIYQD 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  S    EF        +  +AHNA+FD+GF+    Q               LS
Sbjct: 448 MVDKAPKLSDAILEFEK--FASGSVLVAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELS 505

Query: 129 IARRKHPSSRNDLN-SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                  SS      +      +   HR+   A   + +   +  ++   G +      +
Sbjct: 506 RRLLTDLSSHKLNKVAEFLNVELKHHHRADSDAETTAGIFISLVERLKARGYKWLKELNS 565

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
            E     + K    + ++L +++     + K     H + 
Sbjct: 566 IESNAKADLKSHSYHATILVKNQQGLKNLYKLVSYSHLEY 605


>gi|229075504|ref|ZP_04208492.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
 gi|228707600|gb|EEL59785.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
          Length = 318

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGFPEPKNKVIDTVFL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169


>gi|300214373|gb|ADJ78789.1| DNA polymerase III polC-type (PolIII) [Lactobacillus salivarius
           CECT 5713]
          Length = 1444

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 6/189 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD ETTGL ++ D++IE+ AV++   +    TF+ F+ P    +      ++  +  
Sbjct: 426 YVIFDTETTGLSAQYDKVIELAAVKMEKGNVI-DTFEEFIDPG---HPLSQTTINLTSIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            ++   + HNA FDV F+N   +R N + +    I     
Sbjct: 482 DDMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPWIDTLPL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       LN+L K+  I + H   H A+ D+     +Y  M+    +    +  +
Sbjct: 542 ARYLYPEMKGFRLNTLAKKLNIKLEH--HHRAIYDAEATGFIYYAMLKDAEEKQILYHDD 599

Query: 189 EDRFFKEEK 197
            ++   E  
Sbjct: 600 FNKHIGEND 608


>gi|169827163|ref|YP_001697321.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
 gi|168991651|gb|ACA39191.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
          Length = 1468

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 6/175 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++ D    ++ ++ F  P+    S   ++L GITD+
Sbjct: 453 YVVFDVETTGLSTAYDTIIELAAVKIKDGHVIDK-YESFANPH-HPLSATTIELTGITDD 510

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P    +  EF  F  +     +AHNA FD+GF+    ++   +      I     
Sbjct: 511 MVRHAPEVEQVIKEFHAFIGD--GIVVAHNASFDIGFLYTGYKKFGLEGTTHPVIDTLEL 568

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     + LN+LCK++ I       H A+ D+     + ++++    ++  
Sbjct: 569 ARLLYPTMKNHRLNTLCKKFNIE--LTQHHRAIYDTEATGYLLLQLLKDADELVI 621


>gi|148380379|ref|YP_001254920.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932951|ref|YP_001384598.1| DNA polymerase III PolC [Clostridium botulinum A str. ATCC 19397]
 gi|153935522|ref|YP_001388114.1| DNA polymerase III PolC [Clostridium botulinum A str. Hall]
 gi|148289863|emb|CAL83971.1| DNA polymerase III PolC-type [Clostridium botulinum A str. ATCC
           3502]
 gi|152928995|gb|ABS34495.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931436|gb|ABS36935.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A str. Hall]
          Length = 1432

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 6/192 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  SKND+IIEIGAV++      +R F  F+ P  R    +  +L  ITD+
Sbjct: 418 FVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127
            + DK +   I   F DF  +  +  +AHNA FDV FIN   + +  +  +      T  
Sbjct: 476 MVDDKEAIDKILPRFIDFIGD--SVVVAHNASFDVSFINKNCKDLKIEFENSVMDTVTLS 533

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                +    + ++ +      +   HR+   A   + +L   + +M+     I      
Sbjct: 534 RFLFPELKRYKLNVIAKHLGISLENHHRAVDDAKATADILLKSF-EMLREKEIITLHSLN 592

Query: 188 NEDRFFKEEKKT 199
            E       KK 
Sbjct: 593 KEFLGNINIKKE 604


>gi|116515093|ref|YP_802722.1| DNA polymerase III, e subunit [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256947|gb|ABJ90629.1| DNA polymerase III, e subunit [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 231

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 108/246 (43%), Gaps = 28/246 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL------------DYSKTNRTFQVFL 48
           MI+KN  R++  DIETTG++         G + L             +   T R    +L
Sbjct: 1   MIKKNL-RQVFLDIETTGMNKY-------GCIYLNHKIIEIGIIETINRKYTGRYIHYYL 52

Query: 49  CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFIN 107
            P  R     A K+HGI++ FL +KP+F  I+ E ++F           N       +  
Sbjct: 53  YPQ-RSIESSAYKIHGISESFLSNKPTFKDIYKEIFNFIKNSEIIVHNSNFDISFLDYEF 111

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             L          S I DTL IAR+  P  +N+L++LC RY IT  +R+ H ALLD+ +L
Sbjct: 112 FLLNIGINKIKTFSTITDTLFIARKLFPGKKNNLDALCARYKITNINRNFHSALLDAKIL 171

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
             +Y+ M     +INF       R + ++ K   N     +        TK+E   H + 
Sbjct: 172 MKLYMYMTSIQKEINF------SRNYIKKIKIPKNFFKYYKKPLKIIFATKKENQTHLEY 225

Query: 228 IQTLGK 233
           ++ + K
Sbjct: 226 MKKIIK 231


>gi|331269632|ref|YP_004396124.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925]
 gi|329126182|gb|AEB76127.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum BKT015925]
          Length = 1443

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 69/181 (38%), Gaps = 4/181 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  S  D+IIEIGAV++ + +    +F  F+ P  +       +L  IT++
Sbjct: 430 FVVFDLETTGFSSAYDKIIEIGAVKIKNGNII-DSFSTFVNPEIK-VPYNITELTSITND 487

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+  +  SI  +F +F  +        N        N     I+ +       +    
Sbjct: 488 DVKNADTIDSILPKFIEFCGDSVLVAHNANFDMSFIRKNCNDLNIDINY-TVMDTVPLAK 546

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
               +    + +  +      +   HR+   A     +L   + K++      +      
Sbjct: 547 FLFPELKRYKLNTIAKHLGVSLENHHRAVDDAKATGDILLCCF-KLLDDMKITSLDSLNK 605

Query: 189 E 189
           E
Sbjct: 606 E 606


>gi|154686075|ref|YP_001421236.1| DNA polymerase III PolC [Bacillus amyloliquefaciens FZB42]
 gi|154351926|gb|ABS74005.1| PolC [Bacillus amyloliquefaciens FZB42]
          Length = 1437

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 5/197 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+    S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKIRGGEIIDK-FEAFANPH-HPLSATTIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P    +  +F ++  +     +AHNA FD+GF+N   +R+ K     + +IDTL 
Sbjct: 479 MVRDAPDVVDVVRDFKEWIGD--DVLVAHNASFDMGFLNVAYKRLLKTEKAKNPVIDTLE 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +AR  +P  +N   +        I     H A+ D+     + +KM+   ++ +  +   
Sbjct: 537 LARFLYPEFKNHRLNT-LCKKFDIELTQHHRAVFDAEATGYLLLKMLKDAAEKDIFYHDQ 595

Query: 189 EDRFFKEEKKTVPNISL 205
            +    +      +   
Sbjct: 596 LNENMGQSNAYQRSRPY 612


>gi|332306380|ref|YP_004434231.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173709|gb|AEE22963.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 788

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 2/123 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG      RI EIGAV++++      ++   + P  R+      +L GI+++
Sbjct: 623 YVVVDVETTGGCKPGHRITEIGAVKVINGRVV-DSWSSLINPE-RRVPHFITRLTGISND 680

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P F  +  +   F  +        N  +    +       +        + +   
Sbjct: 681 MVEEAPLFCEVIDDLECFMQDCIFVAHNVNFDYGFFKLEYARLERSFSMPKLCTVREMRK 740

Query: 129 IAR 131
              
Sbjct: 741 YYP 743


>gi|229098054|ref|ZP_04229002.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
 gi|228685245|gb|EEL39175.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
          Length = 318

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGFPEPKNKVIDTVFL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169


>gi|313905074|ref|ZP_07838444.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
 gi|313470144|gb|EFR65476.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
          Length = 1536

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 10/212 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +VFDIETTGL +   +IIEIGAV +      +R F  F+ P       +  +L  ITD
Sbjct: 501 NYVVFDIETTGLSNLTCKIIEIGAVRVEHGEVVSR-FSEFINPE-VPIPFKITELTSITD 558

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++D P    I  +F +F  +  A  +AHNA FD GFI  E +R   D          +
Sbjct: 559 AMVEDAPVIEEILPKFREFCGD--AVLVAHNADFDTGFIKMECERQKLDWEFTYVDTVAM 616

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +        SR  L+++ K  G+ + H   H A+ D+   + +++K +    + N     
Sbjct: 617 AQMLLPG-LSRFKLDTVAKAVGVPLEH--HHRAVDDAECTAWIFVKFVEMLKERNI---L 670

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           + D   KE       I  +K    +     +E
Sbjct: 671 DLDALNKEGSVNQNAIRKMKSHHVIILAKNEE 702


>gi|269963944|ref|ZP_06178254.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831319|gb|EEZ85468.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 204

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 9/177 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV+++D      +FQ  + P G + SP      GIT+ 
Sbjct: 8   VVLDFETTGLSPNMGDRAIEIGAVKIVDGEVV-DSFQQLMNP-GFRVSPFIEGYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RI+     + +  +   
Sbjct: 66  MLRTAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERIDCGYSGEFACSLLVA 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
               +  PS +       K      +    H AL D+ + + +++ M+    Q    
Sbjct: 124 RRLIQDAPSHKLGELVRYKNI---ENDGVFHRALADAQVTAKLWLLMVEELEQSGIA 177


>gi|308173621|ref|YP_003920326.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7]
 gi|307606485|emb|CBI42856.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM
           7]
 gi|328553447|gb|AEB23939.1| DNA polymerase III PolC [Bacillus amyloliquefaciens TA208]
 gi|328911762|gb|AEB63358.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3]
          Length = 1437

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 5/197 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+    S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKIRGGEIIDK-FEAFANPH-HPLSATTIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P    +  +F ++  +     +AHNA FD+GF+N   +R+ K     + +IDTL 
Sbjct: 479 MVRDAPDVVDVVRDFKEWIGD--DVLVAHNASFDMGFLNVAYKRLLKTEKAKNPVIDTLE 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +AR  +P  +N   +        I     H A+ D+     + +KM+   ++ +  +   
Sbjct: 537 LARFLYPEFKNHRLNT-LCKKFDIELTQHHRAVFDAEATGYLLLKMLKDAAEKDIFYHDQ 595

Query: 189 EDRFFKEEKKTVPNISL 205
            +    +      +   
Sbjct: 596 LNENMGQSNAYQRSRPY 612


>gi|210622608|ref|ZP_03293268.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
 gi|210154109|gb|EEA85115.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
          Length = 1426

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 10/219 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  + ND+I EIGAV++ D+   +R F   + P  +  S    +L GIT+E
Sbjct: 412 FVVFDLETTGFSNINDKITEIGAVKIRDFEIVDR-FSELVNPE-KDISYRVQELTGITNE 469

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KDKP+   I  +F +F  +     +AHNA FD GFI  + +    +  +       L+
Sbjct: 470 MVKDKPTIEEILPKFMEFVGD--DVLVAHNADFDTGFIMQKCKEQGLEYKNKKVDTLMLA 527

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                +           +   + +   + H A+ D+   ++++IK +    +      ++
Sbjct: 528 RIMLPNLKRYKLDKVAKE---VGVQLLNHHRAVDDAEATANIFIKFLGMLKKQGVEKLSD 584

Query: 189 EDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEH 224
            +    +    K    +I+L+ +++     + K   D H
Sbjct: 585 VNTVLGKVDYTKLKTHHITLIAKNQTGIKNLYKIVSDAH 623


>gi|160893350|ref|ZP_02074137.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50]
 gi|156865042|gb|EDO58473.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50]
          Length = 1514

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 7/194 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTGL  K ++IIEIGAV++ D  + +R F  F+ P          +L  ITDE
Sbjct: 458 YIVFDIETTGLSQKKNKIIEIGAVKVKDGEEIDR-FSEFINPE-EPIPYSIEQLTSITDE 515

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+   I  +F +F  +     +AHNA FD GFI    + +     +      TLS
Sbjct: 516 MVMHAPTVDVILPKFLEFCGD--DIVVAHNAAFDTGFIKKNAKDLGMKFDNTIMDTMTLS 573

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                          +CK   +   H   H A+ D++  + +++K+     +       +
Sbjct: 574 HVLLPELGKFTLDR-VCKALNVKNEH--HHRAVDDANATAKIFVKLYEMLVERGVKTVED 630

Query: 189 EDRFFKEEKKTVPN 202
            +        T+  
Sbjct: 631 VNELGSASDDTIKK 644


>gi|302525360|ref|ZP_07277702.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
 gi|302434255|gb|EFL06071.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
          Length = 572

 Score = 79.2 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 67/174 (38%), Gaps = 4/174 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG     D I EIGAV++         F   + P G    P+ ++L GIT  
Sbjct: 26  FVVFDLETTGTKPGPDGITEIGAVKVRAGQVLGE-FATLVNP-GTPIPPQIVELTGITQA 83

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P    +   F +F +   A  +AHN+ FD  F+ A  +        P+ +     
Sbjct: 84  MVYDAPRIERVLPAFLEFISG--AVLVAHNSGFDTSFMKAACEGHGYVWPRPTVVCTVKL 141

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
             R                  +    R  H AL D+   +DV   ++     + 
Sbjct: 142 ARRVIPREEARSYRLSSLSMLLGSRTRPTHRALDDARATTDVLHALLERVGNLG 195


>gi|301300283|ref|ZP_07206492.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852124|gb|EFK79799.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 1444

 Score = 78.8 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 6/189 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD ETTGL ++ D++IE+ AV++   +    TF+ F+ P    +      ++  +  
Sbjct: 426 YVIFDTETTGLSAQYDKVIELAAVKMEKGNVI-DTFEEFIDPG---HPLSQTTINLTSIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            ++   + HNA FDV F+N   +R N + +    I     
Sbjct: 482 DDMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPWIDTLPL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       LN+L K+  I + H   H A+ D+     +Y  M+    +    +  +
Sbjct: 542 ARYLYPEMKGFRLNTLAKKLNIKLEH--HHRAIYDAEATGFIYYAMLKDAEEKQILYHDD 599

Query: 189 EDRFFKEEK 197
            ++   E  
Sbjct: 600 FNKHVGEND 608


>gi|90961543|ref|YP_535459.1| DNA polymerase III PolC [Lactobacillus salivarius UCC118]
 gi|122449173|sp|Q1WUF9|DPO3_LACS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|90820737|gb|ABD99376.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118]
          Length = 1444

 Score = 78.8 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 6/189 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD ETTGL ++ D++IE+ AV++   +    TF+ F+ P    +      ++  +  
Sbjct: 426 YVIFDTETTGLSAQYDKVIELAAVKMEKGNVI-DTFEEFIDPG---HPLSQTTINLTSIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            ++   + HNA FDV F+N   +R N + +    I     
Sbjct: 482 DDMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPWIDTLPL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       LN+L K+  I + H   H A+ D+     +Y  M+    +    +  +
Sbjct: 542 ARYLYPEMKGFRLNTLAKKLNIKLEH--HHRAIYDAEATGFIYYAMLKDAEEKQILYHDD 599

Query: 189 EDRFFKEEK 197
            ++   E  
Sbjct: 600 FNKHVGEND 608


>gi|228984721|ref|ZP_04144893.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228774919|gb|EEM23313.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 934

 Score = 78.8 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|311030091|ref|ZP_07708181.1| DNA polymerase III PolC [Bacillus sp. m3-13]
          Length = 1437

 Score = 78.8 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      +R F+ F  P+    S   + L GITD+
Sbjct: 422 YVVFDVETTGLSAMYDTIIELAAVKVKGGEIIDR-FESFANPH-HPLSATTINLTGITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P    +  +F ++  +     +AHNA FD+GF+N   QRI         I     
Sbjct: 480 MVQNAPEVGDVLKQFSEWMQD--DILVAHNASFDMGFLNIGFQRIGLGKAKNPVIDTLEL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK++   I     H A+ D+     + +KM+    +    F   
Sbjct: 538 GRLLFPSLKNHRLNTLCKKF--DIELTQHHRAIYDAEATGYLLVKMLKDAFEKGITFHDE 595

Query: 189 EDRFFKEEKKTVPNIS 204
            +              
Sbjct: 596 LNEHSGTTDAYKRARP 611


>gi|229104149|ref|ZP_04234821.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
 gi|228679166|gb|EEL33371.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
          Length = 315

 Score = 78.8 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGFPEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166


>gi|295107656|emb|CBL05199.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 445

 Score = 78.8 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 6/175 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I FD+ETTGL    DRI+EIGA+   D     R+F   + P G + S EA +++ I++
Sbjct: 7   KFIAFDVETTGLSEYADRIVEIGAICFEDRKPM-RSFSTLVNP-GVRISVEASRINHISN 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           E L + PS +  + +F +F  +    N+   AHNA+FD+GF+   L+R+           
Sbjct: 65  EMLGNAPSENQAYEQFVEFLGDALAGNSILCAHNARFDMGFLKNTLERLGYSGTINYVDT 124

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +LS              ++ + + I  +   +     +   +    +  +    
Sbjct: 125 LSLSRRLISD-LPNYKQPTVAQYFNIQNNAEHRAYGDAEVCGMMFCKLASLGEQR 178


>gi|52141929|ref|YP_084901.1| DNA polymerase III subunit epsilon [Bacillus cereus E33L]
 gi|51975398|gb|AAU16948.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
          Length = 315

 Score = 78.8 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 76/206 (36%), Gaps = 7/206 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+
Sbjct: 9   NYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITN 66

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I    
Sbjct: 67  YRVSDAPTIEEVLPVFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVF 124

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
              +    +  + L +L +  G      S H A  D    + VY K      +       
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKLNK 181

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF 213
                    +     +   KRD    
Sbjct: 182 EALDETVVYEAVKEILVRNKRDIEWI 207


>gi|49477263|ref|YP_035758.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196033564|ref|ZP_03100976.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus W]
 gi|218902753|ref|YP_002450587.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH820]
 gi|49328819|gb|AAT59465.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|195993998|gb|EDX57954.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus W]
 gi|218538657|gb|ACK91055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH820]
          Length = 934

 Score = 78.8 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|229121184|ref|ZP_04250421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           95/8201]
 gi|228662303|gb|EEL17906.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           95/8201]
          Length = 934

 Score = 78.8 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|218898970|ref|YP_002447381.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9842]
 gi|228902321|ref|ZP_04066478.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
 gi|228966763|ref|ZP_04127807.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218545449|gb|ACK97843.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9842]
 gi|228792862|gb|EEM40420.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857290|gb|EEN01793.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
          Length = 1433

 Score = 78.8 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 11/211 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  +   I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +    +            R   L    T +
Sbjct: 592 LNDSMGQGDAYKRG-----RPSHLTLLATSD 617


>gi|229220849|ref|YP_287921.2| DNA polymerase III PolC [Mycoplasma hyopneumoniae 7448]
 gi|144575503|gb|AAZ53898.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448]
          Length = 1469

 Score = 78.8 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 3/202 (1%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K++ ++FD+ETTGL +  + IIE GAV L +  +  +  Q F+ P G+            
Sbjct: 408 KLKFVIFDLETTGLSAFYNEIIEFGAVVLQNGIEIEKH-QFFIKPTGKIPPAITKITGIS 466

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                +   S+     +      +  +  +AHNA FD  F+    ++  K  L    I  
Sbjct: 467 QKMIDETAISWEIALEKITKIIKD--SVLVAHNAAFDFSFLEQFFRQKAKKSLKNPIIDT 524

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                        + L ++ KRY I  +    H A  D+ +L+ ++   +      N   
Sbjct: 525 LEVSRFLNPNEKSHSLKNVAKRYEIEYAEEIAHRADYDAKILTTIWKNFLAELKSQNIND 584

Query: 186 KTNEDRFFKEEKKTVPNISLLK 207
            T+         +  P     K
Sbjct: 585 LTSLSEIKNSIFELRPEKVFPK 606


>gi|229117071|ref|ZP_04246451.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
 gi|228666360|gb|EEL21822.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
          Length = 315

 Score = 78.8 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGFPEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166


>gi|229172279|ref|ZP_04299843.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3]
 gi|228611267|gb|EEK68525.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3]
          Length = 934

 Score = 78.8 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL+      +   ++  
Sbjct: 62  DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRWAGYTEVHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|228909642|ref|ZP_04073465.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
 gi|228849931|gb|EEM94762.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
          Length = 1435

 Score = 78.8 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 11/211 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  +   I     
Sbjct: 478 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 536 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 593

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +    +            R   L    T +
Sbjct: 594 LNDSMGQGDAYKRG-----RPSHLTLLATSD 619


>gi|228938753|ref|ZP_04101356.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228971635|ref|ZP_04132257.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228978244|ref|ZP_04138621.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis Bt407]
 gi|228781261|gb|EEM29462.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis Bt407]
 gi|228788048|gb|EEM36005.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228820928|gb|EEM66950.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326939259|gb|AEA15155.1| ATP-dependent helicase DinG [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 934

 Score = 78.8 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            T +  +   +        +L  +        KE++ E++
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMNGKEDIAEYE 215


>gi|229013001|ref|ZP_04170166.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
 gi|228748255|gb|EEL98115.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
          Length = 1435

 Score = 78.8 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 11/211 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +      I     
Sbjct: 478 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGIEKTKNPVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 536 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 593

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +    +            R   L    T +
Sbjct: 594 LNDSMGQGDAYKRG-----RPSHLTLLATSD 619


>gi|229006094|ref|ZP_04163782.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
 gi|228755170|gb|EEM04527.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
          Length = 1433

 Score = 78.8 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F  +  +     +AHNA FD+GF+N   ++   D      I     
Sbjct: 476 MLTDAPEVGEVFKKFESWMGD--HTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHNQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|310828723|ref|YP_003961080.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612]
 gi|308740457|gb|ADO38117.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612]
          Length = 461

 Score = 78.8 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 4/182 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             ++ D+ETTGLD  N+ IIEIGA+++ D +    +F+ F+ P       +   + GIT+
Sbjct: 145 NYVMVDVETTGLDPSNNEIIEIGALKITDGNVI-DSFKTFVKP-INSIPSKITSITGITN 202

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D PS  ++  EF  F ++                 +      N D L    I    
Sbjct: 203 NMVADAPSIKTVLMEFKSFLSDNYIVGYNVLFDIKFLHDSYYKNFGNCDWLSHDYIDVLR 262

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
              +    +  + L ++     I    +  H AL D +   + Y        + N  F+ 
Sbjct: 263 FCRKYFKSAPNHKLTTMIDYLNID--VKEHHRALADCYATLECYNNCKERALKENIRFEL 320

Query: 188 NE 189
           N 
Sbjct: 321 NS 322


>gi|301053179|ref|YP_003791390.1| ATP-dependent DNA helicase [Bacillus anthracis CI]
 gi|300375348|gb|ADK04252.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 934

 Score = 78.8 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|229086370|ref|ZP_04218547.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
 gi|228696982|gb|EEL49790.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
          Length = 1433

 Score = 78.8 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F  +  +     +AHNA FD+GF+N   ++   D      I     
Sbjct: 476 MLTDAPEVGEVFKKFEAWMGD--HTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|75760862|ref|ZP_00740876.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491646|gb|EAO54848.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 1435

 Score = 78.8 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 11/211 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  +   I     
Sbjct: 478 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 536 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 593

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +    +            R   L    T +
Sbjct: 594 LNDSMGQGDAYKRG-----RPSHLTLLATSD 619


>gi|222097262|ref|YP_002531319.1| DNA polymerase iii polc [Bacillus cereus Q1]
 gi|221241320|gb|ACM14030.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
          Length = 1433

 Score = 78.8 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 11/211 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +      I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +    +            R   +    T +
Sbjct: 592 LNDSMGQGDAYKRG-----RPSHMILLATSD 617


>gi|42780745|ref|NP_977992.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus ATCC 10987]
 gi|42736665|gb|AAS40600.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           cereus ATCC 10987]
          Length = 934

 Score = 78.8 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|311033291|ref|ZP_07711381.1| Exonuclease [Bacillus sp. m3-13]
          Length = 216

 Score = 78.8 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 86/189 (45%), Gaps = 5/189 (2%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTG + +++DR+IE+GAV++ +    + + +Q ++ PN R+   E ++L  IT E
Sbjct: 31  VFDTETTGFNVARDDRLIELGAVKIKNLQVIDNSAYQTYINPN-RQIPREIIELTSITQE 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              + P      ++  +  N+ +  ++ H   FD+  I AEL+R N    +P  +     
Sbjct: 90  QTDEAPQALEAITKLTNMANQTSVCYVGHYLAFDMQAIQAELKRNNLKWKNPKSLDTLDL 149

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I          DL    + +G  I    +H AL D+   + ++ +++            +
Sbjct: 150 IGYIAPSYDMRDLEKYARDFGTRIY--QRHSALGDALTTAYLFTELLQLSQDRGLKTWGD 207

Query: 189 EDRFFKEEK 197
             +    + 
Sbjct: 208 LLKIKGSQN 216


>gi|52143806|ref|YP_083022.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus E33L]
 gi|51977275|gb|AAU18825.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
          Length = 934

 Score = 78.8 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|47566006|ref|ZP_00237044.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           cereus G9241]
 gi|47556923|gb|EAL15253.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           cereus G9241]
          Length = 934

 Score = 78.8 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELGQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|65318908|ref|ZP_00391867.1| COG1199: Rad3-related DNA helicases [Bacillus anthracis str. A2012]
          Length = 934

 Score = 78.8 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  E ++     +   ++  
Sbjct: 62  DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEEXRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|260890306|ref|ZP_05901569.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
 gi|260859926|gb|EEX74426.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
          Length = 1151

 Score = 78.8 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 12/215 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI       +VFDIETTG D  ND+IIEIGAV++         F  F+ P      P+  
Sbjct: 111 MIEDEI--YVVFDIETTGFDPFNDKIIEIGAVKMRGREIIGE-FSEFVNPE-IPIPPKIT 166

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L  ITDE + +     ++   F +F  +      AHNAKFDVGFI  +      +    
Sbjct: 167 ELTTITDEMVANAEKIETVLPRFLEFCTDTTVV--AHNAKFDVGFIKQKTIEQGLEYSPS 224

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVG 177
                 L+       S    L +L K +GIT    + H A+ D+   ++V   ++ M++ 
Sbjct: 225 VIDTLPLARTLLPD-SRGYGLANLVKYFGIT--LETHHRAVDDAKATAEVFQKFLNMILS 281

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
              +       + +   +  +T+  + L+K    L
Sbjct: 282 KGILKLIEINTDLQPNIQNSETLNTMILVKNQAGL 316


>gi|187778984|ref|ZP_02995457.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC
           15579]
 gi|187772609|gb|EDU36411.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC
           15579]
          Length = 1442

 Score = 78.8 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 6/192 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  SKND+IIEIGAV++      +R F  F+ P  R    +  +L  ITD+
Sbjct: 428 FVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPEKITELTSITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127
            + DK +   I   F +F  +  +  +AHNA FDV FIN   + +  +  +      T  
Sbjct: 486 MVDDKEAIDKILPRFIEFIGD--SVVVAHNAAFDVSFINKNCKDLKIEFKNSVMDTVTLS 543

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                +    + ++ +      +   HR+   A   + +L   + +M+     I      
Sbjct: 544 RFLFPELKRYKLNVIAKHLGISLENHHRAVDDAKATADILLKSF-EMLKEKEIITLHNLN 602

Query: 188 NEDRFFKEEKKT 199
            E       KK 
Sbjct: 603 KEFLGNINIKKE 614


>gi|323705405|ref|ZP_08116980.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535307|gb|EGB25083.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 1410

 Score = 78.4 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 7/188 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL S ND IIEIGAV++ ++     TF+ F+ P     S    KL GITD+
Sbjct: 399 FVVFDIETTGLSSINDNIIEIGAVKIKNFQIV-DTFETFVNPQVH-ISKFITKLTGITDD 456

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+ PS   I  +F DF  +  +  +AHNA FDV FI  + + +  +  +P        
Sbjct: 457 MVKEYPSIEEILPKFLDFIKD--SILVAHNANFDVTFIKTKARNLGMEVDNPVLDTL-EL 513

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+++ +  G++    + H A+ D+   ++++IK +    +        
Sbjct: 514 SRHMYENLKNYKLDTVAQHLGVS--LENHHRAVDDAKATAEIFIKSINKLKENGIEKVNE 571

Query: 189 EDRFFKEE 196
            + + K +
Sbjct: 572 INDYLKNK 579


>gi|228932930|ref|ZP_04095795.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826733|gb|EEM72502.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 934

 Score = 78.4 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFQDVAPMVGELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|317129167|ref|YP_004095449.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM
           2522]
 gi|315474115|gb|ADU30718.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM
           2522]
          Length = 1434

 Score = 78.4 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 8/196 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTGL +  + IIE+ AV++ +    +R F+ F  P+ +      + L GITD+
Sbjct: 420 YIVFDVETTGLSAVYNTIIELAAVKVKNGEIVDR-FESFANPHEKLTP-LIIDLTGITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P    +  +F ++  +  A  +AHNA FD+GFINA  Q+I         I     
Sbjct: 478 MVENAPEVDDVLKDFHEWIGD--ATLVAHNASFDMGFINAGFQKIGYGHATNPVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF--GFK 186
                       LN+LCK++ I     + H A+ D+     +  KM+   +       F+
Sbjct: 536 GRLLYPTFKNYRLNTLCKKFNIE--LVAHHRAIYDAEATGHLLWKMVKDATSQGIMKHFQ 593

Query: 187 TNEDRFFKEEKKTVPN 202
            NE     + KK  PN
Sbjct: 594 LNEQTSKDDYKKQRPN 609


>gi|229090605|ref|ZP_04221839.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-42]
 gi|228692748|gb|EEL46473.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-42]
          Length = 934

 Score = 78.4 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|167624226|ref|YP_001674520.1| DNA polymerase III subunit epsilon [Shewanella halifaxensis
           HAW-EB4]
 gi|167354248|gb|ABZ76861.1| DNA polymerase III, epsilon subunit [Shewanella halifaxensis
           HAW-EB4]
          Length = 213

 Score = 78.4 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 93/204 (45%), Gaps = 12/204 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL   + DR IEIGAV L D    +R FQ  + P G + S       GI++E
Sbjct: 17  IVLDFETTGLSPNQGDRAIEIGAVMLKDGKVIDR-FQQLMNP-GFRVSGFIENYTGISNE 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L D  S  ++ ++F DF  + N   +AHNA FD  F++AEL R+N +     +  +   
Sbjct: 75  MLSDAKSCETVMTQFADFIGDYN--LVAHNASFDQRFLDAELSRVNCNYPGQFACSMLIA 132

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS---QINFG 184
               +  P+ +       K           H AL DS + +D+++ M+   +   QI   
Sbjct: 133 RRLYQDAPNHKLGSLIHYKNI---QHDGVFHRALADSEMTADLWLVMLEDLNADYQIKRA 189

Query: 185 FKTNEDRFFKEEKKTVPNISLLKR 208
             +      K+ K +V      +R
Sbjct: 190 DFSLLQAIAKQSKASVSQYLARQR 213


>gi|229155207|ref|ZP_04283319.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           4342]
 gi|228628334|gb|EEK85049.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           4342]
          Length = 934

 Score = 78.4 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L KR+ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKRHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|168180697|ref|ZP_02615361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum NCTC 2916]
 gi|182668382|gb|EDT80361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum NCTC 2916]
          Length = 1432

 Score = 78.4 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 83/192 (43%), Gaps = 6/192 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  SKND+IIEIGAV++      +R F  F+ P  R    +  +L  ITD 
Sbjct: 418 FVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPK-RTIPDKITELTSITDN 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127
            + DK +   I   F DF  +  +  +AHNA FDV FIN   + +  +  +      T  
Sbjct: 476 MVDDKETIDKILPRFIDFIGD--SVVVAHNASFDVSFINKNCKDLKIEFENSVMDTVTLS 533

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                +    + ++ +      +   HR+   A   + +L   + +M+     I      
Sbjct: 534 RFLFPELKRHKLNVIAKHLGISLENHHRAVDDAKATADILLKSF-EMLREKEIITLHSLN 592

Query: 188 NEDRFFKEEKKT 199
            E       KK 
Sbjct: 593 KEFLGNINIKKE 604


>gi|228998594|ref|ZP_04158181.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
 gi|228761062|gb|EEM10021.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
          Length = 1433

 Score = 78.4 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F  +  +     +AHNA FD+GF+N   ++   D      I     
Sbjct: 476 MLTDAPEVGEVFKKFESWMGD--HTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|300117431|ref|ZP_07055221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus SJ1]
 gi|298725266|gb|EFI65918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus SJ1]
          Length = 934

 Score = 78.4 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|228992546|ref|ZP_04152473.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
 gi|228767180|gb|EEM15816.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
          Length = 1433

 Score = 78.4 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F  +  +     +AHNA FD+GF+N   ++   D      I     
Sbjct: 476 MLTDAPEVGEVFKKFESWMGD--HTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|229168557|ref|ZP_04296280.1| DNA polymerase III polC-type [Bacillus cereus AH621]
 gi|228614963|gb|EEK72065.1| DNA polymerase III polC-type [Bacillus cereus AH621]
          Length = 1433

 Score = 78.4 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +      I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGIEKTKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|254519189|ref|ZP_05131245.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
 gi|226912938|gb|EEH98139.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
          Length = 1442

 Score = 78.4 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 10/211 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTG  +KND+IIEIGAV++        TF  F+ P  R    +  +L GITDE
Sbjct: 429 FIVFDIETTGFSAKNDKIIEIGAVKIKGREVI-DTFSEFVYPKCR-IPYKITELTGITDE 486

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D      +  +F +F +      +AHNA FD GFI    +  N   L+ +  I    
Sbjct: 487 IVQDADPIEVVLPKFIEFIDG--CAVVAHNAAFDTGFIK---KNCNDLGLEFNSTIVDTV 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
              R        +        + +S  + H A+ D+   ++++   ++   ++      N
Sbjct: 542 PLARFLYPELKRVKLNLVAKHLGVSLENHHRAVDDAKATAEIF---LISIKKMIEELNMN 598

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                 +E     +I   K    +    T+ 
Sbjct: 599 SLNDLNKEFLEKMDIKKEKTYHIIIFAKTQA 629


>gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1]
 gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum
           Rt17-B1]
          Length = 1390

 Score = 78.4 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 110/239 (46%), Gaps = 28/239 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGL+ ++D I+EIGAV+  D    +  F  F+ PN  K + ++L + GIT++
Sbjct: 383 YVVLDLETTGLNPRSDEIMEIGAVKTRDGKVIDE-FHTFVRPN--KLNKKSLNITGITED 439

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD P    +  +  +F  +  +  +AHNA FD+ F+   L +   +   P      LS
Sbjct: 440 MLKDAPDIMQVLPKLLEFIKD--SILVAHNADFDMTFLKNILSKSGIEFNPPYIDTLRLS 497

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
            A  ++      L+ L   +G+       H AL D+ +  +V+ K++    + +      
Sbjct: 498 QALLRNKIKSFSLDKLVDHFGLG--AFQHHRALDDARVTVNVFWKLIELAKKKSITTFEK 555

Query: 189 EDRFFKEEK---KTVPNISLLKRDKP------------------LFTRITKEELDEHDK 226
            ++  +      K   ++++L R+K                   +  ++ K EL++H +
Sbjct: 556 LNKLVENINPLVKHPQHVTVLVRNKTGLKNLYKLISKAHTETFFVVPQVLKSELEKHRE 614


>gi|315640656|ref|ZP_07895761.1| DNA polymerase III [Enterococcus italicus DSM 15952]
 gi|315483595|gb|EFU74086.1| DNA polymerase III [Enterococcus italicus DSM 15952]
          Length = 911

 Score = 78.4 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 83/222 (37%), Gaps = 10/222 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG + K DRI + G V + +     R F   + P GR  SP+   L   T++
Sbjct: 4   YAIVDIETTGTNPKEDRIFQFGCVFVENGEIVGR-FATMIHP-GRSISPQIQHLTHTTNK 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++  +     ++AHN  FD  F+NAEL+R   + L    I     
Sbjct: 62  DVRHSPYFEDVAPTIYELLSG--TVFVAHNIHFDYRFLNAELERCGCERLQLKGIDTVEL 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF----G 184
                       L+ L +  G+       H A  D+ + + ++I +    + +       
Sbjct: 120 AQILFPTEISFRLSDLSESLGLAH--ERPHQADSDAEVTAQLFIALEQRLASLPLCTIKE 177

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK 226
                     +  + +       +    F  + + E     K
Sbjct: 178 LSRLSKTLTMQTGEFIAKYVQYSKLPNQFPELIEIEKIALQK 219


>gi|229061421|ref|ZP_04198766.1| DNA polymerase III polC-type [Bacillus cereus AH603]
 gi|228717844|gb|EEL69492.1| DNA polymerase III polC-type [Bacillus cereus AH603]
          Length = 1433

 Score = 78.4 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   +++  +      I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKVGIEKTKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|152975065|ref|YP_001374582.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023817|gb|ABS21587.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           cytotoxicus NVH 391-98]
          Length = 929

 Score = 78.4 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 83/222 (37%), Gaps = 10/222 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV +         F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEGGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +     +    AHN  FD  F+  EL++     +   +I  
Sbjct: 62  DENLVKQAPLFQDVAPMIVELLQGASFV--AHNVHFDWNFLKEELKQAGYADIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLTQIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
            T +  +   +        +L  +        KEE +E+D  
Sbjct: 176 VTLQSLYELSDVFQSDMSHILSENILKKMTAGKEESEEYDIY 217


>gi|228945241|ref|ZP_04107597.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228814476|gb|EEM60741.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 934

 Score = 78.4 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|86137282|ref|ZP_01055859.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. MED193]
 gi|85825617|gb|EAQ45815.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. MED193]
          Length = 484

 Score = 78.4 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
             VFD ETTGL    D I++IGAV +L+            + P GR     + ++HG++ 
Sbjct: 277 FAVFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDP-GRPIPEASTRVHGVST 335

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  P  +   +EF       +A  +AHNA FD+ F+    +        P      L
Sbjct: 336 AMVQGAPDIAEAAAEF--HLFATDAVIVAHNAPFDMAFLRRHAKASGLAWDHPILDTVLL 393

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           S A     S  + L++LC+R  ITI    +H AL D+   +   ++M+       F 
Sbjct: 394 S-AVLFGASVPHTLDALCERLDITIPPALRHTALGDAQATACALVQMIPMLQARGFN 449


>gi|229174271|ref|ZP_04301804.1| DNA polymerase III alpha subunit [Bacillus cereus MM3]
 gi|228609128|gb|EEK66417.1| DNA polymerase III alpha subunit [Bacillus cereus MM3]
          Length = 318

 Score = 78.4 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      IAHNA FD+ F+ + +  +         I     
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHT--NVIIAHNASFDMRFLKSNVSMLGLPEPQNKVIDTVFL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169


>gi|218282259|ref|ZP_03488558.1| hypothetical protein EUBIFOR_01140 [Eubacterium biforme DSM 3989]
 gi|218216727|gb|EEC90265.1| hypothetical protein EUBIFOR_01140 [Eubacterium biforme DSM 3989]
          Length = 525

 Score = 78.4 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 8/181 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I     R + FD+ETTGLDSK DRIIE+GA+   +   T  T+   + P  +  S EA  
Sbjct: 45  IEDYMKRYVAFDVETTGLDSKKDRIIEVGAILFENG-HTVETYSSLVNPEVK-ISKEATT 102

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPL 118
           ++ IT+  +K  P+   +  E   F  +         AHNA FD+ F++     + +   
Sbjct: 103 INHITNGMVKKAPTEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLS--QALMRQGYD 160

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                +DTLS++R+  P   N   +   ++   I ++ +H A+ D+ +  ++  K++   
Sbjct: 161 AQILCLDTLSLSRKIIPGLSNYKQTTVAKH-FNIKNKQEHRAISDAEVCGEILWKLLSIK 219

Query: 179 S 179
            
Sbjct: 220 K 220


>gi|160902928|ref|YP_001568509.1| DNA polymerase III PolC [Petrotoga mobilis SJ95]
 gi|160360572|gb|ABX32186.1| DNA polymerase III, alpha subunit [Petrotoga mobilis SJ95]
          Length = 1388

 Score = 78.4 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 10/222 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL+   + IIEIGAV++ +    ++ F   + P  +  S       GIT++
Sbjct: 382 FVVFDLETTGLEPAMNEIIEIGAVKIKNMKIVSK-FHRLVKP-RKPVSNFTSNFTGITNQ 439

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+ +     +  +F  F     A  +AHNA FD  FI   ++R+  +  + + I     
Sbjct: 440 MLEVEKPIEEVLPQFLSFIEG--AVLVAHNAIFDYRFIREWVRRVYNEHFEQTYIDTVAL 497

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   S      + +   + +     H A  D+++ + V++K++      N    ++
Sbjct: 498 SKSLLTLKSYGLAKVVEE---LKLGSFEHHRAHEDANITALVFLKLIEMAKSQNVEMLSD 554

Query: 189 ED---RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
            +   +F   ++    + ++L ++K     + K   + H K 
Sbjct: 555 LEKLKKFIDFKRIQPNDTTILVKNKTGLKNLYKLVSNAHVKY 596


>gi|228926672|ref|ZP_04089741.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228833048|gb|EEM78616.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 934

 Score = 78.4 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|196039095|ref|ZP_03106402.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus NVH0597-99]
 gi|196030240|gb|EDX68840.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus NVH0597-99]
          Length = 934

 Score = 78.4 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|118477094|ref|YP_894245.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus thuringiensis str. Al Hakam]
 gi|196046614|ref|ZP_03113838.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB108]
 gi|225863505|ref|YP_002748883.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB102]
 gi|229183836|ref|ZP_04311053.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC
           6E1]
 gi|118416319|gb|ABK84738.1| ATP-dependent DNA helicase [Bacillus thuringiensis str. Al Hakam]
 gi|196022547|gb|EDX61230.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB108]
 gi|225789838|gb|ACO30055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB102]
 gi|228599685|gb|EEK57288.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC
           6E1]
          Length = 934

 Score = 78.4 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|47567894|ref|ZP_00238601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
 gi|47555372|gb|EAL13716.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
          Length = 303

 Score = 78.4 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 78/206 (37%), Gaps = 7/206 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+
Sbjct: 12  NYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITN 69

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P+   +   F  F ++     +AHNA FD+ F+ + +  +         I    
Sbjct: 70  YRVSDAPTIEEVLPLFLAFLHK--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVF 127

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
              +    +  + L +L +  G      S H A  D    + VY K      +      T
Sbjct: 128 LAKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNT 184

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF 213
                    +     +   KRD    
Sbjct: 185 EVLDETAVYEAVKEILVRNKRDIEWI 210


>gi|183602347|ref|ZP_02963713.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019]
 gi|241191299|ref|YP_002968693.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196705|ref|YP_002970260.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218266|gb|EDT88911.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019]
 gi|240249691|gb|ACS46631.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251259|gb|ACS48198.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794292|gb|ADG33827.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 188

 Score = 78.4 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 7/169 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +  M  I  D+ETTG  ++NDRI EIGAV++ D    +R F   + P GR+ S    +L 
Sbjct: 6   RIPMNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDR-FTQLVNP-GRRVSARITELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-INAELQRINKDPLDPSR 122
           GI++E L+D+P    I  +F      +N   + HN KFD+ F I    +  +       R
Sbjct: 64  GISNEMLEDQPVIEDILGDFIH--WTENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVR 121

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            IDT+ I R   PS R+ L  L +RYGI      +H AL D+       
Sbjct: 122 PIDTMHIDRLLFPSERHRLVDLIQRYGIG--DVEEHRALSDATQTYQCL 168


>gi|206974778|ref|ZP_03235693.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus H3081.97]
 gi|217959123|ref|YP_002337671.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus AH187]
 gi|222095271|ref|YP_002529331.1| bifunctional ATP-dependent DNA helicase/DNA polymerase iii subunit
           epsilon [Bacillus cereus Q1]
 gi|206746797|gb|EDZ58189.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus H3081.97]
 gi|217066733|gb|ACJ80983.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH187]
 gi|221239329|gb|ACM12039.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
          Length = 934

 Score = 78.4 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|30261638|ref|NP_844015.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Ames]
 gi|47526838|ref|YP_018187.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184469|ref|YP_027721.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Sterne]
 gi|165869397|ref|ZP_02214056.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0488]
 gi|167639095|ref|ZP_02397368.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0193]
 gi|170706543|ref|ZP_02897003.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0389]
 gi|177650486|ref|ZP_02933453.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0174]
 gi|190568647|ref|ZP_03021552.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis Tsiankovskii-I]
 gi|227815611|ref|YP_002815620.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. CDC 684]
 gi|229602233|ref|YP_002866045.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0248]
 gi|254734478|ref|ZP_05192190.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Western North America
           USA6153]
 gi|254755128|ref|ZP_05207162.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Vollum]
 gi|254759665|ref|ZP_05211689.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Australia 94]
 gi|30255866|gb|AAP25501.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. Ames]
 gi|47501986|gb|AAT30662.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49178396|gb|AAT53772.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           anthracis str. Sterne]
 gi|164714837|gb|EDR20355.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0488]
 gi|167512885|gb|EDR88258.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0193]
 gi|170128641|gb|EDS97508.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0389]
 gi|172083630|gb|EDT68690.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0174]
 gi|190560247|gb|EDV14227.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis Tsiankovskii-I]
 gi|227006832|gb|ACP16575.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. CDC 684]
 gi|229266641|gb|ACQ48278.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0248]
          Length = 934

 Score = 78.4 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|71893884|ref|YP_279330.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae J]
 gi|71852011|gb|AAZ44619.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J]
          Length = 1468

 Score = 78.4 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 3/202 (1%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K++ ++FD+ETTGL +  + I+E GAV L +  +  +  Q F+ P G+            
Sbjct: 407 KLKFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKH-QFFIKPTGKIPPAITKITGIS 465

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                +   S+     +      +  +  +AHNA FD  F+    ++  K  L    I  
Sbjct: 466 QKMIDETAISWEIALEKITKIIKD--SVLVAHNAAFDFSFLEQFFRQKAKKSLKNPIIDT 523

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                        + L ++ KRY I       H A  D+ +L+ ++   +      N   
Sbjct: 524 LEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIWKNFLAELKSQNIND 583

Query: 186 KTNEDRFFKEEKKTVPNISLLK 207
            T+         +  P     K
Sbjct: 584 LTSLSEIKNSIFELRPEKVFPK 605


>gi|229195843|ref|ZP_04322602.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1293]
 gi|228587616|gb|EEK45675.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1293]
          Length = 934

 Score = 78.4 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|319779076|ref|YP_004129989.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9]
 gi|317109100|gb|ADU91846.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9]
          Length = 186

 Score = 78.4 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 101/189 (53%), Gaps = 15/189 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +  D ETTG       RIIE+G VE++   K+ R   ++  P+ R++   A ++H I
Sbjct: 1   MRYVCLDTETTGSKYYLGHRIIELGCVEVICGQKSGRELHMYFNPD-RRSDFGAFRVHKI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +DEFL DKP F+    E  DF     +  + HNA FD+GF+N E +   +  L+   +  
Sbjct: 60  SDEFLLDKPRFADCVDEIIDFLYG--STLVIHNAPFDMGFLNYEFKISGQPKLNEFVVDV 117

Query: 126 T-------LSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLDSHLLSDVYIKM 174
                   + + ++ HP+ R  L++L K    +      HR+ HGAL+D+ +L+D++I++
Sbjct: 118 IDTVILGRMKLPKKLHPNQRYSLDALYKTLVRSDYNPALHRNPHGALIDARMLADLFIRL 177

Query: 175 MVGGSQINF 183
            +G  +I  
Sbjct: 178 NMGQEEIPI 186


>gi|323484216|ref|ZP_08089585.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
           WAL-14163]
 gi|323692098|ref|ZP_08106345.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
 gi|323402458|gb|EGA94787.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
           WAL-14163]
 gi|323503898|gb|EGB19713.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
          Length = 1511

 Score = 78.4 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 10/211 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG     +RIIEIGAV + +    ++ F  F+ P+      E  KL GI D  
Sbjct: 487 VVFDIETTGFSPLKNRIIEIGAVRVEEGRIVDK-FSSFVNPD-VPIPFEIEKLTGINDNM 544

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P    +  EF +F     A  +AHNA FD+ FI    ++   +         +L+ 
Sbjct: 545 VLDAPKIDRVLPEFLEFCRG--AVMVAHNAGFDISFIKENARQQGLEFNPTVLDTVSLAR 602

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGGSQINFGFK 186
               + +         +   + I+  + H A+ D+   +++   +IKM+      +    
Sbjct: 603 VLLPNLNRFKLDTVAKE---LKINLANHHRAVDDAGATAEIFVRFIKMLKERDIFDLSQL 659

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
               R   E  + +P   ++   K    R+ 
Sbjct: 660 NELSRMTVEMIRKMPTYHIIIIAKNDVGRVN 690


>gi|323340059|ref|ZP_08080325.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
 gi|323092565|gb|EFZ35171.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
          Length = 1448

 Score = 78.4 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD ETTGL ++ +++IE+ AV++ D  K    F+ F+ P    +      ++     
Sbjct: 428 YVVFDTETTGLSAQYNKVIELAAVKMKDGEKIGE-FEEFIDPG---HPLSQTTINLTHIT 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S +            +    + HNA FDV F+N    R     +    +     
Sbjct: 484 DAMVRGSKTEEEVFKLFREFCKGCIIVGHNATFDVDFMNTGYLRHGMPEIKEPWVDTLPL 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R  L++L KR  + + H   H A+ D+     ++ KM+    +       +
Sbjct: 544 ARILYSDMKRFTLDTLAKRLKVDLEH--HHRAIYDAEATGYIFYKMLADAREQFDILYHD 601

Query: 189 EDRFFKEEKKTVPNISLL 206
           +      +  T       
Sbjct: 602 DFNKHMVQPDTYKQQHPF 619


>gi|302670324|ref|YP_003830284.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316]
 gi|302394797|gb|ADL33702.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316]
          Length = 1529

 Score = 78.4 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 4/175 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG     +RIIEIGAV++ +     R F  F+ P          KL  ITDE
Sbjct: 498 FVVFDIETTGFSPIKNRIIEIGAVKIRNGEILER-FSEFINPQ-VPIPYRIEKLTSITDE 555

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   I  +F +F  +  A  + HN  FD+ FIN   Q +  D    +     L+
Sbjct: 556 MVMDAPTREVIIPKFVEFCKD--AVLVGHNVAFDISFINQNCQDLGIDVDYTTVDTLWLA 613

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                  +             +   H         + L+ + +I M+      N 
Sbjct: 614 RYFFPLQAKHTLDAVAKTLNVVLDHHHRAVDDAECTALIFNKFIPMLKEQKAENL 668


>gi|163941555|ref|YP_001646439.1| DNA polymerase III PolC [Bacillus weihenstephanensis KBAB4]
 gi|163863752|gb|ABY44811.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 1433

 Score = 78.4 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +      I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGIEKTKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|291536049|emb|CBL09161.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis M50/1]
          Length = 911

 Score = 78.1 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 7/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG     ++IIEIGAV+++    T R F  F+ P          +L  I D+
Sbjct: 481 YVVFDLETTGFSPDKNKIIEIGAVKVVHGEITER-FSTFVNPE-VPIPYRIEELTSIRDD 538

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   +I  +F +F  +  A  +AHNA FD+ FI    +R   +          L+
Sbjct: 539 MVIDAPKIETILPQFMEFCGD--AIMVAHNADFDMSFIIKNCERQGIEKEFTIIDTVALA 596

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R  L+++ K  G++    + H A+ D+   +++++K +             
Sbjct: 597 RILLPQ-LNRFKLDTVAKALGVS--LENHHRAVDDAGCTAEIFVKFVKMLHDRGMETLDQ 653

Query: 189 EDRFFKEEKKTVPNIS 204
            ++  +   +T+  ++
Sbjct: 654 VNQMGQASPETIMKMN 669


>gi|228940906|ref|ZP_04103465.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973835|ref|ZP_04134411.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980424|ref|ZP_04140734.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228779244|gb|EEM27501.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228785860|gb|EEM33863.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818742|gb|EEM64808.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326941584|gb|AEA17480.1| DNA polymerase III PolC [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 1433

 Score = 78.1 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  +   I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|229117304|ref|ZP_04246682.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
 gi|228666204|gb|EEL21668.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
          Length = 1435

 Score = 78.1 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++      +   I     
Sbjct: 478 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLAKTNNPVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 536 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHNQ 593

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 594 LNDSMGQGDAYKRGRP 609


>gi|229031448|ref|ZP_04187448.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
 gi|228729737|gb|EEL80717.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
          Length = 1433

 Score = 78.1 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  +   I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|229134625|ref|ZP_04263435.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
 gi|228648886|gb|EEL04911.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
          Length = 1433

 Score = 78.1 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +      I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGIEKTKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|324325658|gb|ADY20918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 934

 Score = 78.1 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|309807200|ref|ZP_07701174.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166421|gb|EFO68626.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 03V1-b]
          Length = 1424

 Score = 78.1 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+   +      ++  +  
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 462

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +              Q+     HN +FD+GF+NA L+R N D +    +     
Sbjct: 463 DEMVQNADDENIVIRQFQDFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 522

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++    +    F+  
Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 577

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                 +  K        K +      I K
Sbjct: 578 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 607


>gi|319645959|ref|ZP_08000189.1| PolC protein [Bacillus sp. BT1B_CT2]
 gi|317391709|gb|EFV72506.1| PolC protein [Bacillus sp. BT1B_CT2]
          Length = 1463

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 5/197 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++       R F+ F  P+ R  S   ++L GITD+
Sbjct: 422 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIER-FERFANPH-RPLSATIIELTGITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD P    +  +F ++  +     +AHNA FD+GFIN   +R+       + +IDTL 
Sbjct: 480 MLKDAPEVEEVIRDFKEWVGD--HTLVAHNASFDIGFINVAYKRLLNSEKVQNPVIDTLE 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           + R  +P  +N   +        I     H A+ D+     + +KM+   ++ N  +   
Sbjct: 538 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDTEATGYLLVKMLKDAAEKNILYHDQ 596

Query: 189 EDRFFKEEKKTVPNISL 205
            +    +      +   
Sbjct: 597 LNENMGQSNAYQRSRPY 613


>gi|326791606|ref|YP_004309427.1| DNA polymerase III subunit alpha [Clostridium lentocellum DSM 5427]
 gi|326542370|gb|ADZ84229.1| DNA polymerase III, alpha subunit [Clostridium lentocellum DSM
           5427]
          Length = 1468

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 82/212 (38%), Gaps = 10/212 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG   K +RIIEIGAV+++       TF  F+ P       +  KL GI D 
Sbjct: 442 YVVFDLETTGFSPKMNRIIEIGAVKVVGGQIV-DTFSEFVNPK-VPIPYQIEKLTGINDR 499

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +  +   +  +F  F        +AHNA FD+ FI A  +               L+
Sbjct: 500 MVMEAETIEVLLPQFLAFCEG--CVMVAHNADFDMSFIEANAKEQGLAADFTVMDTVALA 557

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGGSQINFGF 185
                H  +    N       + IS  + H A+ D+    ++   +I+M+          
Sbjct: 558 RILMPHLGNFKLNNVA---KHLDISLENHHRAVDDATATGEIFVRFIEMLQEKGVTTLDA 614

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
             +      +  K +P    +   K    RI 
Sbjct: 615 INDMVEISPDYIKKLPTYHGVILVKNEIGRIN 646


>gi|228986699|ref|ZP_04146829.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773030|gb|EEM21466.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 315

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +    +  + L +L +  G      S H A  D    + VY K      +      T 
Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                   +     +   KRD    
Sbjct: 183 VLDETAVYEAVKKILVRNKRDIEWV 207


>gi|188997343|ref|YP_001931594.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932410|gb|ACD67040.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 205

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 5/196 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL+ K   IIEI A+++     T + F   + P+         KL GIT+  +
Sbjct: 13  VVDLETTGLNPKTSEIIEIAAIKVEGSVITEK-FHTLVKPSIGFIPEHITKLTGITNPLV 71

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +F  F +    +N+  IAHNAKFD+ F+N    ++    +    I   +   
Sbjct: 72  IDKPKIEQVFPHFLE--FTKNSIIIAHNAKFDISFLNEASLQLTGKLIQNPVICTLVLAN 129

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R         L +L   + I    +  H AL D+ +  +++ K +            +  
Sbjct: 130 RLFPDLKSKSLTNLAYHFNIPYHRK--HRALADAEVTYELFKKFVDYLQNYKVDKVIDLI 187

Query: 191 RFFKEEKKTVPNISLL 206
           R    +   +P+    
Sbjct: 188 RLSNGKDLKLPSKRRR 203


>gi|329919876|ref|ZP_08276814.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 1401G]
 gi|328936966|gb|EGG33396.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 1401G]
          Length = 1424

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+   +      ++  +  
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 462

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +              Q+     HN +FD+GF+NA L+R N D +    +     
Sbjct: 463 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 522

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++    +    F+  
Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 577

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                 +  K        K +      I K
Sbjct: 578 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 607


>gi|312873343|ref|ZP_07733396.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2052A-d]
 gi|311091133|gb|EFQ49524.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2052A-d]
          Length = 1420

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+   +      ++  +  
Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 458

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +              Q+     HN +FD+GF+NA L+R N D +    +     
Sbjct: 459 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 518

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++    +    F+  
Sbjct: 519 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 573

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                 +  K        K +      I K
Sbjct: 574 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 603


>gi|259501583|ref|ZP_05744485.1| DNA polymerase III [Lactobacillus iners DSM 13335]
 gi|302191443|ref|ZP_07267697.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus iners
           AB-1]
 gi|259167101|gb|EEW51596.1| DNA polymerase III [Lactobacillus iners DSM 13335]
          Length = 1420

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+   +      ++  +  
Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 458

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +              Q+     HN +FD+GF+NA L+R N D +    +     
Sbjct: 459 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 518

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++    +    F+  
Sbjct: 519 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 573

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                 +  K        K +      I K
Sbjct: 574 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 603


>gi|325911796|ref|ZP_08174200.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 143-D]
 gi|325476302|gb|EGC79464.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 143-D]
          Length = 1416

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+   +      ++  +  
Sbjct: 399 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 454

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +              Q+     HN +FD+GF+NA L+R N D +    +     
Sbjct: 455 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 514

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++    +    F+  
Sbjct: 515 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 569

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                 +  K        K +      I K
Sbjct: 570 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 599


>gi|295399848|ref|ZP_06809829.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111640|ref|YP_003989956.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|294978251|gb|EFG53848.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216741|gb|ADP75345.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1]
          Length = 1436

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + IIE+ AV++ D    +R F  F  P+    S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FTSFANPH-HPLSMTTIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD P    +  +F+D+  +  +  +AHNA FD+GF+N    +I    +    I     
Sbjct: 479 MLKDAPDVEEVLRQFYDWIGD--SVLVAHNASFDIGFLNVGFAKIGLGKVTNPVIDTLEL 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK++   I     H A+ D+     + ++M+    +       +
Sbjct: 537 ARFLYPDLKNHRLNTLCKKF--DIELTQHHRAIYDAEATGYLLMRMLKDAQERGI-LYHD 593

Query: 189 EDRFFKEEKKTVPNISLL 206
           E     +E+ +       
Sbjct: 594 ELNKRSKEEVSYQRSRPF 611


>gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 1410

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 7/188 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL S ND IIEIGAV++ D      TF+ F+ P     S    KL GITD+
Sbjct: 399 FVVFDIETTGLSSINDSIIEIGAVKIKDCQIV-DTFETFVNPQIH-ISNFITKLTGITDD 456

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K  P    +  +F +F           N             +     +D   +     
Sbjct: 457 MVKRYPPIDEVLPKFLEFIKGSTLVAHNANFDVT---FIKTKAKNLGIEVDNPVLDTLEL 513

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+++ +  G++    + H A+ D+   +++++K +    +        
Sbjct: 514 SRHMYENLKNYKLDTVAQHLGVS--LENHHRAVDDARATAEIFLKSINKLKENGIEKVNE 571

Query: 189 EDRFFKEE 196
            + + K +
Sbjct: 572 INSYLKNK 579


>gi|309809542|ref|ZP_07703400.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308170214|gb|EFO72249.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 1424

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+   +      ++  +  
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 462

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +              Q+     HN +FD+GF+NA L+R N D +    +     
Sbjct: 463 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 522

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++    +    F+  
Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 577

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                 +  K        K +      I K
Sbjct: 578 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 607


>gi|228922572|ref|ZP_04085872.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837001|gb|EEM82342.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 1433

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  +   I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|89098599|ref|ZP_01171481.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
 gi|89086561|gb|EAR65680.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
          Length = 1440

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 6/189 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTGL +  D IIE+ AV++ D    +R F+ F  P+    S   + L GITD+
Sbjct: 425 YIVFDVETTGLSAVYDTIIELAAVKIHDGEIIDR-FESFANPH-HPLSATTIDLTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P    +   F +    QN   +AHNA FD+GF+N   +R          I     
Sbjct: 483 DVRNAPEVEEVLRRFKE--WSQNDILVAHNASFDMGFLNTGYKRYGLGKAANPVIDTLEL 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L K++   +     H A+ D+     + IKM+    Q    +   
Sbjct: 541 ARFLLPEMKNHRLNTLAKKF--DVELTQHHRAIYDAEATGYLLIKMLKEVMQKGIEYHNQ 598

Query: 189 EDRFFKEEK 197
            +    +  
Sbjct: 599 LNDNMGKGN 607


>gi|331090692|ref|ZP_08339541.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400106|gb|EGG79757.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 1487

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 7/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  S  D+IIEIGAV++ +    +R +  F+ P       E  KL  ITD 
Sbjct: 452 FVVFDIETTGFSSVKDKIIEIGAVKVENGKIVSR-YSTFVNPE-VPIPFEITKLTSITDA 509

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   ++  EF ++  +  A  +AHNA FDVGFI    +R+  +    S     L+
Sbjct: 510 MVIDAPKIETVLPEFMEYVGD--AVLVAHNAGFDVGFIEENCRRLGMERKLTSVDTVALA 567

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  S             + IS  + H A+ D+   +++++K +    +        
Sbjct: 568 RVLLPTLSRYKLNIVAKT---LGISLENHHRAVDDAGATAEIFVKFVEMLKEREITTLKG 624

Query: 189 EDRFFKEEKKTVPNIS 204
            + F       +  + 
Sbjct: 625 VNEFGAMNPDAIRKMP 640


>gi|289177416|gb|ADC84662.1| DNA polymerase III, epsilon chain [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 190

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 7/169 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +  M  I  D+ETTG  ++NDRI EIGAV++ D    +R F   + P GR+ S    +L 
Sbjct: 8   RIPMNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDR-FTQLVNP-GRRVSARITELT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-INAELQRINKDPLDPSR 122
           GI++E L+D+P    I  +F      +N   + HN KFD+ F I    +  +       R
Sbjct: 66  GISNEMLEDQPVIEDILGDFIH--WTENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVR 123

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            IDT+ I R   PS R+ L  L +RYGI      +H AL D+       
Sbjct: 124 PIDTMHIDRLLFPSERHRLVDLIQRYGIG--DVEEHRALSDATQTYQCL 170


>gi|143342|gb|AAA22666.1| polymerase III [Bacillus subtilis]
          Length = 1437

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 5/197 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+ R  S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P    +  +F     +     +AHNA FD+GF+N   +++ +     + +IDTL 
Sbjct: 479 MLQDAPDVVDVIRDFRVRIGD--DILVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLE 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           + R  +P  +N   +        I     H A+ D+   + + +KM+   ++    +   
Sbjct: 537 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDTEATAYLLLKMLKDAAEKGIQYHDE 595

Query: 189 EDRFFKEEKKTVPNISL 205
            +    +      +   
Sbjct: 596 LNENMGQSNAYQRSRPY 612


>gi|312871361|ref|ZP_07731457.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 3008A-a]
 gi|312872402|ref|ZP_07732471.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311091984|gb|EFQ50359.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311093113|gb|EFQ51461.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 3008A-a]
          Length = 1420

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+   +      ++  +  
Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 458

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +              Q+     HN +FD+GF+NA L+R N D +    +     
Sbjct: 459 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 518

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++    +    F+  
Sbjct: 519 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 573

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                 +  K        K +      I K
Sbjct: 574 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 603


>gi|312875787|ref|ZP_07735779.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2053A-b]
 gi|311088691|gb|EFQ47143.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2053A-b]
          Length = 1424

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+   +      ++  +  
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 462

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +              Q+     HN +FD+GF+NA L+R N D +    +     
Sbjct: 463 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 522

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++    +    F+  
Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 577

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                 +  K        K +      I K
Sbjct: 578 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 607


>gi|54020575|ref|YP_116058.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae 232]
 gi|53987748|gb|AAV27949.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 232]
          Length = 1469

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 3/202 (1%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K++ ++FD+ETTGL +  + I+E GAV L +  +  +  Q F+ P G+            
Sbjct: 408 KLKFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKH-QFFIKPTGKIPPAITKITGIS 466

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                +   S+     +      +  +  +AHNA FD  F+    ++  K  L    I  
Sbjct: 467 QKMIDETAISWEIALEKITKIIKD--SVLVAHNAAFDFSFLEQFFRQKAKKSLKNPIIDT 524

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                        + L ++ KRY I       H A  D+ +L+ ++   +      N   
Sbjct: 525 LEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIWKNFLAELKSQNIND 584

Query: 186 KTNEDRFFKEEKKTVPNISLLK 207
            T+         +  P     K
Sbjct: 585 LTSLSEIKNSIFELRPEKVFPK 606


>gi|89072880|ref|ZP_01159437.1| putative DNA polymerase III [Photobacterium sp. SKA34]
 gi|89051402|gb|EAR56857.1| putative DNA polymerase III [Photobacterium sp. SKA34]
          Length = 207

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 9/173 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   + DR IEIGAV+L++    ++ FQ  + P G + S       GI++ 
Sbjct: 11  VVLDFETTGLSPNQGDRAIEIGAVKLVNGEIVDQ-FQQLMNP-GFRVSSFIEGYTGISNN 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L+  P    +   F DF  + N   +AHNA FD  F++AEL  I +      +  +   
Sbjct: 69  MLRTAPPCHEVMDAFADFIGDAN--LVAHNASFDQRFLDAELADIGRYYTGTFTCSMLIA 126

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
               +  P+ +       K       +   H AL DS + + +++ M+    +
Sbjct: 127 RRLYQHAPNHKLGTLVDFKHI---KHNGVFHRALADSEMTARLWLVMLEDIKR 176


>gi|229160592|ref|ZP_04288587.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           R309803]
 gi|228623002|gb|EEK79833.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           R309803]
          Length = 933

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 86/220 (39%), Gaps = 10/220 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            T +  +   +        +L  +        KEE  E++
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEEAVEYE 215


>gi|311068754|ref|YP_003973677.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus atrophaeus 1942]
 gi|310869271|gb|ADP32746.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus atrophaeus 1942]
          Length = 930

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 7/180 (3%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN +       +L 
Sbjct: 2   NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPFFIEQLT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT+  ++++  F ++  E +   +       AHN  FD+GF+  EL        D   +
Sbjct: 60  GITNSMVENEQPFEAVAEEVFQLLDGAYFV--AHNIHFDLGFVKYELNEAGFRLPDCEVL 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                            L  L +   +     + H A  D+ +   +++K++    ++  
Sbjct: 118 DTVELSRIVYPGFEGYKLTELSEELQLKH--ENPHRADSDAEVTGFIFLKIIDKLQRLPL 175


>gi|229098287|ref|ZP_04229234.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
 gi|228685185|gb|EEL39116.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
          Length = 1433

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++      +   I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLAKTNNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|229104380|ref|ZP_04235049.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
 gi|228679078|gb|EEL33286.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
          Length = 1433

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++      +   I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLAKTNNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|325913471|ref|ZP_08175837.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 60-B]
 gi|325477240|gb|EGC80386.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 60-B]
          Length = 1424

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+   +      ++  +  
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 462

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +              Q+     HN +FD+GF+NA L+R N D +    +     
Sbjct: 463 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 522

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++    +    F+  
Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 577

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                 +  K        K +      I K
Sbjct: 578 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 607


>gi|257091883|ref|YP_003165524.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044407|gb|ACV33595.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 735

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTG++    D II+IGAV +++     N  F   + P         +++HGI+D+
Sbjct: 547 VFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLVDPERFIRPEG-IRIHGISDD 605

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ +P+   +     DF N+     +AHNA FD+ F+   L+           ++DTL 
Sbjct: 606 MVRGQPNIEVVLPALHDFCND--TVLVAHNAAFDMRFLQ--LKEERTGVAFSQPVLDTLL 661

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++   HP+  +          + I    +H AL D+   ++V++KM+   +Q+  
Sbjct: 662 LSGVLHPNQESHQLDSIAER-LGIGIEDRHNALGDACATAEVFLKMLPLLAQMGI 715


>gi|159046099|ref|YP_001534893.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
 gi|157913859|gb|ABV95292.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
          Length = 485

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 6/199 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGI 65
           + ++FD ETTGL  +  D + +I A  +++        F   + P GR     A  +HGI
Sbjct: 290 KYVIFDTETTGLLPERGDEVCQIAACRVVNGKMVKTEMFDTLVNP-GRPIPLSATNIHGI 348

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD  + D P F +    F        A  IAHNA FD+ F   +   I      P     
Sbjct: 349 TDAMVADAPDFLTAGRAFHG--FADGAVLIAHNAPFDMAFFYRKQAEIGARFDHPVLDTV 406

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            LS A     + ++ L++L +R  +TI   ++H AL D+   ++V++K++          
Sbjct: 407 LLS-AVIYGQTEQHSLDALAERLNVTIPEEARHTALGDALATTEVFLKLLPMLQAKGIET 465

Query: 186 KTNEDRFFKEEKKTVPNIS 204
             +     K+  + + +++
Sbjct: 466 FGDLLAQTKKHARLLEDLN 484


>gi|315653430|ref|ZP_07906352.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
 gi|315489355|gb|EFU78995.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
          Length = 1424

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+   +      ++  +  
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 462

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +              Q+     HN +FD+GF+NA L+R N D +    +     
Sbjct: 463 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 522

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++    +    F+  
Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 577

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                 +  K        K +      I K
Sbjct: 578 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 607


>gi|170754900|ref|YP_001781966.1| DNA polymerase III PolC [Clostridium botulinum B1 str. Okra]
 gi|169120112|gb|ACA43948.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum B1 str. Okra]
          Length = 1432

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 6/192 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  SKND+IIEIGAV++      +R F  F+ P  R    +  +L  ITD+
Sbjct: 418 FVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127
            + DK +   I   F +F  +  +  +AHNA FD  FIN   + +  +  +      T  
Sbjct: 476 MVDDKEAIDKILPRFIEFIGD--SVVVAHNAAFDASFINKNCKDLKIEFKNSVMDTVTLS 533

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                +    + ++ +      +   HR+   A   + +L   + +M+     I      
Sbjct: 534 RFLFPELKRYKLNVIAKHLGISLENHHRAVDDAKATADILLKSF-EMLKEKEIITLHNLN 592

Query: 188 NEDRFFKEEKKT 199
            E       KK 
Sbjct: 593 KEFLGNINIKKE 604


>gi|227486439|ref|ZP_03916755.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235620|gb|EEI85635.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
          Length = 1463

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 78/203 (38%), Gaps = 8/203 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL    D I EIGAV + +   T  T+   + P  R    + +++ GITD 
Sbjct: 448 FVVFDIETTGLLKYRDAITEIGAVRVENGEIT-ETYNQLINPE-RILPEKIVEITGITDA 505

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L DKP    +   F DF  +  +  +  N  FDVGFI    +R+             ++
Sbjct: 506 MLADKPKIDEVLPGFLDFCGD--SLIVGQNTDFDVGFIRENAKRLGLKFDPIYLDTLPMA 563

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-MVGGSQINFGFKT 187
            A        +      K   + I   + H A  D+   + ++IKM  +   +       
Sbjct: 564 RALFDDMGKFSLDKIARK---LDIPAFNHHRASDDARATAQIFIKMYKMIMEEEGLNLSK 620

Query: 188 NEDRFFKEEKKTVPNISLLKRDK 210
                    K      S L   K
Sbjct: 621 INRLKTNYPKAKHETFSALAFAK 643


>gi|228986961|ref|ZP_04147087.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772739|gb|EEM21179.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 1433

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  +   I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|229157394|ref|ZP_04285472.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
 gi|228626121|gb|EEK82870.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
          Length = 1433

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  +   I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|229162754|ref|ZP_04290711.1| DNA polymerase III polC-type [Bacillus cereus R309803]
 gi|228620636|gb|EEK77505.1| DNA polymerase III polC-type [Bacillus cereus R309803]
          Length = 1433

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  +   I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|206972660|ref|ZP_03233601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH1134]
 gi|218234060|ref|YP_002368619.1| DNA polymerase III PolC [Bacillus cereus B4264]
 gi|228960034|ref|ZP_04121698.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047504|ref|ZP_04193094.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|229071316|ref|ZP_04204539.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|229081073|ref|ZP_04213583.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|229111289|ref|ZP_04240842.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|229129094|ref|ZP_04258067.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|229152017|ref|ZP_04280212.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|229180094|ref|ZP_04307438.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|229191987|ref|ZP_04318957.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|296504313|ref|YP_003666013.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
 gi|206732417|gb|EDZ49598.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH1134]
 gi|218162017|gb|ACK62009.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus B4264]
 gi|228591538|gb|EEK49387.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|228603303|gb|EEK60780.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|228631366|gb|EEK88000.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|228654331|gb|EEL10196.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|228672065|gb|EEL27356.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|228702117|gb|EEL54593.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|228711770|gb|EEL63722.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|228723751|gb|EEL75106.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|228799550|gb|EEM46503.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296325365|gb|ADH08293.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
          Length = 1433

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  +   I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|229174484|ref|ZP_04302016.1| DNA polymerase III polC-type [Bacillus cereus MM3]
 gi|228609044|gb|EEK66334.1| DNA polymerase III polC-type [Bacillus cereus MM3]
          Length = 1433

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  +   I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|228954094|ref|ZP_04116123.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805660|gb|EEM52250.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 1433

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  +   I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|30021907|ref|NP_833538.1| DNA polymerase III PolC [Bacillus cereus ATCC 14579]
 gi|229146389|ref|ZP_04274760.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
 gi|81433857|sp|Q819Y5|DPO3_BACCR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|29897463|gb|AAP10739.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
 gi|228637022|gb|EEK93481.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
          Length = 1435

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  +   I     
Sbjct: 478 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 536 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 593

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 594 LNDSMGQGDAYKRGRP 609


>gi|47569095|ref|ZP_00239784.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
 gi|47554257|gb|EAL12619.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
          Length = 1433

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  +   I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|114321202|ref|YP_742885.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227596|gb|ABI57395.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 714

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 11/192 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            +VFD E TGL+ +  D II I  V +++    T  TF   + P GR   P +++ HGIT
Sbjct: 509 FVVFDCEMTGLNPEGGDEIISIAGVRVVNGRVLTGETFDRIINP-GRPIPPGSVRFHGIT 567

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ ++DKP    +  +F  F  +  A  +AHNA FD+ FI+   +R      D   +   
Sbjct: 568 DDDVQDKPPIEVVLPQFKSFVGD--AVLVAHNAAFDMKFIS-MKEREAGVRFDNPVLDTL 624

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY---IKMMVGGSQINF 183
           L  A        + L++LC RYGI I+ R  H AL D+   +++    I+ +       F
Sbjct: 625 LLSALLDGDEEDHSLDALCDRYGIAITGR--HTALGDTLATAELLVRIIERLEAQGYQTF 682

Query: 184 GFKTNEDRFFKE 195
           G      R   E
Sbjct: 683 GEVMKASRMAAE 694


>gi|219683338|ref|YP_002469721.1| DNA polymerase III polC-type [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|219620988|gb|ACL29145.1| DNA polymerase III polC-type [Bifidobacterium animalis subsp.
           lactis AD011]
          Length = 123

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 4/102 (3%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +  M  I  D+ETTG  ++NDRI EIGAV++ D    +R F   + P GR+ S    +L 
Sbjct: 6   RIPMNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDR-FTQLVNP-GRRVSARITELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           GI++E L+D+P    I  +F      +N   + HN KFD+ F
Sbjct: 64  GISNEMLEDQPVIEDILGDFIH--WTENDRLVGHNTKFDLSF 103


>gi|117920694|ref|YP_869886.1| DNA polymerase III subunit epsilon [Shewanella sp. ANA-3]
 gi|117613026|gb|ABK48480.1| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3]
          Length = 229

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 7/172 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL   +  R IEIGAV +     T R F   + P  R NS            
Sbjct: 31  VVLDFETSGLSPNQGARAIEIGAVLIEQGQITAR-FSELMNPGFRINSFIEDYTGISNQM 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P  + + + F +F  + +   +AHNA FD  F++AE  +I             L 
Sbjct: 90  LAHAAPC-AEVMARFAEFIGKHH--LVAHNATFDQRFLDAEFSQIGHQYPGQFGCSLLL- 145

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ARR +P + N   +   R+    ++ + H AL D+ +   ++++M+    Q
Sbjct: 146 -ARRLYPEAINHQLATLVRHKQLPTNGTYHRALADAEMTGHLWLRMLADLKQ 196


>gi|312621985|ref|YP_004023598.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202452|gb|ADQ45779.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 1402

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 5/220 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG DS+ D+IIEIGAV++ +     R F  F+ P G+       +L GI  +
Sbjct: 390 FVVVDIETTGFDSQRDKIIEIGAVKIENGQIIER-FSTFVDPEGK-IPVRISELTGIYQD 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRIIDTL 127
            +   P  +    EF        +  +AHNA+FD+GF+     +            ++  
Sbjct: 448 MVDKAPKLNDAILEFEK--FASGSILVAHNAQFDIGFLKKAYHECGIIFDYTYIDTLELS 505

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                   S + +  +      +   HR+   A   + + + +  K+ + G +      +
Sbjct: 506 RRLLTDLSSHKLNKVAEFLNVELKHHHRADSDAETTAGIFTSLLEKLKLRGYKWLKELNS 565

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
            E     + K    + ++L +++     + K     H + 
Sbjct: 566 IESNTKADLKSHSYHATILVKNQQGLKNLYKLVSYSHLEY 605


>gi|118478852|ref|YP_896003.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al
           Hakam]
 gi|196038559|ref|ZP_03105868.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           NVH0597-99]
 gi|196044683|ref|ZP_03111918.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB108]
 gi|225865592|ref|YP_002750970.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB102]
 gi|229092581|ref|ZP_04223732.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
 gi|229185845|ref|ZP_04313018.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
 gi|118418077|gb|ABK86496.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|196024718|gb|EDX63390.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB108]
 gi|196030967|gb|EDX69565.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           NVH0597-99]
 gi|225789766|gb|ACO29983.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB102]
 gi|228597557|gb|EEK55204.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
 gi|228690734|gb|EEL44510.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
          Length = 315

 Score = 78.1 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I   L 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVLL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +    +  + L +L +  G      S H A  D    + VY K      +        
Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKLNKK 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                   +     +   KRD    
Sbjct: 183 ALDETVVYEAVKDILVRNKRDIEWI 207


>gi|229019012|ref|ZP_04175854.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
 gi|229025258|ref|ZP_04181678.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228736011|gb|EEL86586.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228742340|gb|EEL92498.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
          Length = 1433

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +      I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN++CK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|167635812|ref|ZP_02394121.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0442]
 gi|254739618|ref|ZP_05197312.1| DNA polymerase III PolC [Bacillus anthracis str. Kruger B]
 gi|167528769|gb|EDR91527.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0442]
          Length = 1433

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +      I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINIGFKKAGLEKTKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|226949776|ref|YP_002804867.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A2 str. Kyoto]
 gi|226841257|gb|ACO83923.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A2 str. Kyoto]
          Length = 1432

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 6/192 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  SKND+IIEIGAV++      +R F  F+ P  R    +  +L  ITD+
Sbjct: 418 FVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127
            + DK +   I   F +F    N+  +AHNA FDV FIN   + +  +  +      T  
Sbjct: 476 MVDDKEAIDKILPRFIEFI--GNSVVVAHNAAFDVSFINKNCKDLKIEFKNSVMDTVTLS 533

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                +    + ++ +      +   HR+   A   + +L   + +M+     I      
Sbjct: 534 RFLFPELKRYKLNVIAKHLGISLENHHRAVDDAKATADILLKAF-EMLKEKEIITLHNLN 592

Query: 188 NEDRFFKEEKKT 199
            E       KK 
Sbjct: 593 KEFLGNINIKKE 604


>gi|170761721|ref|YP_001787734.1| DNA polymerase III PolC [Clostridium botulinum A3 str. Loch Maree]
 gi|169408710|gb|ACA57121.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 1432

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 6/192 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  +KND+IIEIGAV++      +R F  F+ P GR    +  +L  ITD+
Sbjct: 418 FVVFDLETTGFSNKNDKIIEIGAVKIEKGKIVDR-FSEFVNP-GRSIPDKITELTSITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127
            ++DK +   I   F DF  +  +  +AHNA FDV FIN   + +  +  +      T  
Sbjct: 476 MVQDKETIDKILPRFIDFIGD--SVVVAHNAAFDVSFINKNCKDLKIEFENSVMDTVTLS 533

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                +    + ++ +      +   HR+   A   + +L   + +M+     I      
Sbjct: 534 RFLFPELKRYKLNVIAKHLGISLENHHRAVDDAKATADILLKSF-EMLKEKEIITLHNLN 592

Query: 188 NEDRFFKEEKKT 199
            E       KK 
Sbjct: 593 KEFLGNINIKKE 604


>gi|322806689|emb|CBZ04258.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065]
          Length = 1432

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 6/192 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  SKND+IIEIGAV++      +R F  F+ P  R    +  +L  ITD+
Sbjct: 418 FVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127
            + DK +   I   F +F    N+  +AHNA FDV FIN   + +  +  +      T  
Sbjct: 476 MVDDKEAIDKILPRFIEFI--GNSVVVAHNAAFDVSFINKNCKDLKIEFKNSVMDTVTLS 533

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                +    + ++ +      +   HR+   A   + +L   + +M+     I      
Sbjct: 534 RFLFPELKRYKLNVIAKHLGISLENHHRAVDDAKATADILLKAF-EMLKEKEIITLHNLN 592

Query: 188 NEDRFFKEEKKT 199
            E       KK 
Sbjct: 593 KEFLGNINIKKE 604


>gi|291538542|emb|CBL11653.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis XB6B4]
          Length = 905

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 7/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG     ++IIEIGAV++     T R F  F+ P          +L  I D+
Sbjct: 475 YVVFDLETTGFSPDKNKIIEIGAVKVEHGEITER-FSTFVNPE-VPIPYRIEELTSIRDD 532

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   +I  +F +F  +  A  +AHNA FD+ FI    +R   +          L+
Sbjct: 533 MVIDAPKIETILPQFMEFCGD--AIMVAHNADFDMSFIIKNCERQGIEKEFTIIDTVALA 590

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R  L+++ K  G++    + H A+ D+   +++++K +             
Sbjct: 591 RILLPQ-LNRFKLDTVAKALGVS--LENHHRAVDDAGCTAEIFVKFVKMLHDRGMETLDQ 647

Query: 189 EDRFFKEEKKTVPNIS 204
            ++  +   +T+  ++
Sbjct: 648 VNQMGQASPETIMKMN 663


>gi|153938397|ref|YP_001391721.1| DNA polymerase III PolC [Clostridium botulinum F str. Langeland]
 gi|152934293|gb|ABS39791.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum F str. Langeland]
 gi|295319747|gb|ADG00125.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum F str. 230613]
          Length = 1432

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 6/192 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  SKND+IIEIGAV++      +R F  F+ P  R    +  +L  ITD+
Sbjct: 418 FVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127
            + DK +   I   F +F    N+  +AHNA FDV FIN   + +  +  +      T  
Sbjct: 476 MVDDKEAIDKILPRFIEFI--GNSVVVAHNAAFDVSFINKNCKDLKIEFKNSVMDTVTLS 533

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                +    + ++ +      +   HR+   A   + +L   + +M+     I      
Sbjct: 534 RFLFPELKRYKLNVIAKHLGISLENHHRAVDDAKATADILLKAF-EMLKEKEIITLHNLN 592

Query: 188 NEDRFFKEEKKT 199
            E       KK 
Sbjct: 593 KEFLGNINIKKE 604


>gi|228934882|ref|ZP_04097713.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824782|gb|EEM70583.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 315

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 76/205 (37%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +    +  + L +L +  G      S H A  D    + VY K      +        
Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKLNKK 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                   +     +   KRD    
Sbjct: 183 ALDETVVYEAVKEILVRNKRDIEWI 207


>gi|82703123|ref|YP_412689.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
 gi|82411188|gb|ABB75297.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 463

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 8/169 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG    +DRIIEI  +   +  ++ R ++  + P G    P    L GI++ 
Sbjct: 6   YVILDLETTGGTPLHDRIIEIALIRFEEGMESER-WETLVNP-GISIPPFITHLTGISNG 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD PSF  I    + F +   A   AHN +FD GF+  E +R+    L    +     
Sbjct: 64  MVKDAPSFGDIAHRLYGFLDG--AVLAAHNVRFDYGFLKNEYRRMGAL-LQHRVLCTARL 120

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +       + L+++ +R+G+    R +    ++       Y++M   
Sbjct: 121 SRKLYPQHKGHGLDAIMQRHGLKTEMRHRAMGDVELVA---AYLEMARR 166


>gi|52080261|ref|YP_079052.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52785638|ref|YP_091467.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52003472|gb|AAU23414.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC
           14580]
 gi|52348140|gb|AAU40774.1| PolC [Bacillus licheniformis ATCC 14580]
          Length = 1438

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 5/197 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++       R F+ F  P+ R  S   ++L GITD+
Sbjct: 422 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIER-FERFANPH-RPLSATIIELTGITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD P    +  +F ++  +     +AHNA FD+GFIN   +R+       + +IDTL 
Sbjct: 480 MLKDAPEVEEVIRDFKEWVGD--HTLVAHNASFDIGFINVAYKRLLNSEKVQNPVIDTLE 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           + R  +P  +N   +        I     H A+ D+     + +KM+   ++ N  +   
Sbjct: 538 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDTEATGYLLVKMLKDAAEKNILYHDQ 596

Query: 189 EDRFFKEEKKTVPNISL 205
            +    +      +   
Sbjct: 597 LNENMGQSNAYQRSRPY 613


>gi|196036920|ref|ZP_03104304.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus W]
 gi|228928866|ref|ZP_04091898.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|195990475|gb|EDX54459.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus W]
 gi|228830673|gb|EEM76278.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 1433

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +      I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|228935132|ref|ZP_04097959.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824497|gb|EEM70302.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 1433

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +      I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|229029323|ref|ZP_04185411.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1271]
 gi|228731982|gb|EEL82876.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1271]
          Length = 934

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEVHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|229092858|ref|ZP_04223992.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
 gi|228690480|gb|EEL44263.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
          Length = 1433

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +      I     
Sbjct: 476 MLIDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|167639871|ref|ZP_02398140.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0193]
 gi|177652036|ref|ZP_02934582.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0174]
 gi|254735856|ref|ZP_05193562.1| DNA polymerase III PolC [Bacillus anthracis str. Western North
           America USA6153]
 gi|167512272|gb|EDR87649.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0193]
 gi|172082405|gb|EDT67470.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0174]
          Length = 1433

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +      I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|30263821|ref|NP_846198.1| DNA polymerase III PolC [Bacillus anthracis str. Ames]
 gi|47529245|ref|YP_020594.1| DNA polymerase III PolC [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186668|ref|YP_029920.1| DNA polymerase III PolC [Bacillus anthracis str. Sterne]
 gi|52141670|ref|YP_085159.1| DNA polymerase III PolC [Bacillus cereus E33L]
 gi|65321145|ref|ZP_00394104.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bacillus anthracis str. A2012]
 gi|165872624|ref|ZP_02217255.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0488]
 gi|170687849|ref|ZP_02879063.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0465]
 gi|170706900|ref|ZP_02897358.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0389]
 gi|190568456|ref|ZP_03021363.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis Tsiankovskii-I]
 gi|196042171|ref|ZP_03109454.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus NVH0597-99]
 gi|218904946|ref|YP_002452780.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH820]
 gi|227813274|ref|YP_002813283.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. CDC 684]
 gi|228947537|ref|ZP_04109827.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229123331|ref|ZP_04252535.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|229601637|ref|YP_002868056.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0248]
 gi|254683475|ref|ZP_05147335.1| DNA polymerase III PolC [Bacillus anthracis str. CNEVA-9066]
 gi|254721996|ref|ZP_05183785.1| DNA polymerase III PolC [Bacillus anthracis str. A1055]
 gi|254756009|ref|ZP_05208040.1| DNA polymerase III PolC [Bacillus anthracis str. Vollum]
 gi|254759330|ref|ZP_05211355.1| DNA polymerase III PolC [Bacillus anthracis str. Australia 94]
 gi|301055308|ref|YP_003793519.1| DNA polymerase III subunit alpha [Bacillus anthracis CI]
 gi|30258465|gb|AAP27684.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. Ames]
 gi|47504393|gb|AAT33069.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49180595|gb|AAT55971.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. Sterne]
 gi|51975139|gb|AAU16689.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
 gi|164711656|gb|EDR17202.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0488]
 gi|170128318|gb|EDS97187.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0389]
 gi|170668165|gb|EDT18914.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0465]
 gi|190560460|gb|EDV14438.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis Tsiankovskii-I]
 gi|196027023|gb|EDX65647.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus NVH0597-99]
 gi|218536830|gb|ACK89228.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH820]
 gi|227006508|gb|ACP16251.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. CDC 684]
 gi|228660107|gb|EEL15743.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|228812057|gb|EEM58388.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229266045|gb|ACQ47682.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0248]
 gi|300377477|gb|ADK06381.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis
           str. CI]
          Length = 1433

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +      I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|302386245|ref|YP_003822067.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
 gi|302196873|gb|ADL04444.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
          Length = 1516

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 82/210 (39%), Gaps = 10/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  S  +RIIEIGAV++ + +  ++ F  F+ P+      E  KL GI D 
Sbjct: 492 YVVFDIETTGFSSSRNRIIEIGAVKVENGTIADK-FSTFVNPD-VPIPFEIEKLTGINDN 549

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  + I   F +F    N+  +AHNA FDV FI     R+N            L+
Sbjct: 550 MVLPYPKINEILPRFLEFC--GNSVLVAHNAAFDVSFIAYNAARLNLAFEPTVIDTVALA 607

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                + +               +S  + H A+ D+   +++++  +    +        
Sbjct: 608 RLLLPNLNRYKLDTVAKALV---VSLENHHRAVDDAGCTAEIFVAFVKMLRERGVE---T 661

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
            D        +   I  L     +      
Sbjct: 662 LDELNGLSTMSADMIKKLPTHHVIILAAND 691


>gi|217961238|ref|YP_002339806.1| DNA polymerase III PolC [Bacillus cereus AH187]
 gi|229140459|ref|ZP_04269014.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
 gi|229197928|ref|ZP_04324644.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|217065194|gb|ACJ79444.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH187]
 gi|228585646|gb|EEK43748.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|228643020|gb|EEK99296.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
          Length = 1433

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +      I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|49478392|ref|YP_037879.1| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49329948|gb|AAT60594.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 1433

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +      I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|323496243|ref|ZP_08101301.1| DNA polymerase III, alpha subunit [Vibrio sinaloensis DSM 21326]
 gi|323318520|gb|EGA71473.1| DNA polymerase III, alpha subunit [Vibrio sinaloensis DSM 21326]
          Length = 204

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 9/177 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV+L++      TFQ  + P G + S       GIT++
Sbjct: 8   VVLDFETTGLSPNMGDRAIEIGAVKLVNGEVV-DTFQQLMNP-GFRVSAFIEGYTGITNQ 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L   PS   + +EF DF   +N   +AHNA FD  F++ EL+R+      + +  +   
Sbjct: 66  MLSGAPSCDEVMTEFADFIRGEN--LVAHNASFDKRFLDDELERVKVAYRGEFACSLLIS 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
               +  PS +       K      +    H AL D+ + + +++ M+    Q    
Sbjct: 124 RRLHQDAPSHKLGDIVRYKHI---ENDGVFHRALADAQVTAKLWMVMVNDLQQRGIA 177


>gi|229018800|ref|ZP_04175648.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
 gi|229025042|ref|ZP_04181470.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
 gi|228736248|gb|EEL86815.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
 gi|228742492|gb|EEL92644.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
          Length = 315

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 4/162 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RPIPNRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPFFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             +    +  + L +L +  GI +S  +     +    +   
Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQN 167


>gi|134299812|ref|YP_001113308.1| DNA polymerase III subunit alpha [Desulfotomaculum reducens MI-1]
 gi|134052512|gb|ABO50483.1| DNA polymerase III catalytic subunit, PolC type [Desulfotomaculum
           reducens MI-1]
          Length = 1426

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 5/202 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTG   + D IIEIGAV+ L+  +  R F   + P  ++   E  KL GITDE 
Sbjct: 415 VIIDFETTGFSPQTDEIIEIGAVKYLNGEEVGR-FGTLVNPK-KEIPFEVTKLTGITDEM 472

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P      +   +F  E  A  +AHNA FD+ F+   L++  K  +    I      
Sbjct: 473 VKDAPDGKEALTALSEFMGE--AVLVAHNASFDLSFLRVGLRKYLKQEVTNPAIDTLGVA 530

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL-LSDVYIKMMVGGSQINFGFKTN 188
                    + LN+L K + I +++  +      +   L  ++++ +      +    + 
Sbjct: 531 RVLFPNLKNHKLNTLVKEFKIELTNHHRAVDDASATAKLWQIFLRKLAEQEISDVKTLSG 590

Query: 189 EDRFFKEEKKTVPNISLLKRDK 210
             +   +EK    ++++L +D+
Sbjct: 591 MGQGVNQEKLKSRHVTILVKDE 612


>gi|332980705|ref|YP_004462146.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1
           BON]
 gi|332698383|gb|AEE95324.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1
           BON]
          Length = 288

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 7/174 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGL+  ND+IIE+ AV+  D    +R F   + P          +++ ITDE
Sbjct: 115 FVAIDLETTGLNPINDKIIEVAAVKFKDGQIIDR-FTTLINPEIH-IPSGITRINHITDE 172

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P  + +     +F  +  +  + HNA FD+ F+         D  +        +
Sbjct: 173 MVKDAPVLAEVMPCLVNFIED--SILVMHNASFDLKFLKHHAMNFGHDINNSYIDTLP-T 229

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
                       L ++    G  I   S H A  D+ +   V IK +      +
Sbjct: 230 CRNIFSGLENYKLPTIASHLG--ICGDSFHRACNDAEICGQVLIKCIETAKDRS 281


>gi|90414417|ref|ZP_01222394.1| putative DNA polymerase III [Photobacterium profundum 3TCK]
 gi|90324530|gb|EAS41086.1| putative DNA polymerase III [Photobacterium profundum 3TCK]
          Length = 214

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 15/194 (7%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL   + DR IEIGAV + +    +R FQ  + P  R +S          + 
Sbjct: 16  IVLDFETTGLSPTQGDRAIEIGAVLMENGKVVDR-FQKLMNPGFRVSSFIEGYTGITNNM 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTL 127
                P  + +  +F DF  + N   +AHNA FD  F++AEL  I +         +   
Sbjct: 75  LRTAAPC-NEVMDQFTDFIGDYN--LVAHNASFDKRFLDAELDIIKRSYGGEFACSMLIA 131

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV------GGSQI 181
               +  P+ +       K           H AL DS + + ++++M+          Q 
Sbjct: 132 RRLYQNAPNHKLGSLVAYKNI---DHDGVFHRALADSEMTAKLWLQMLEDLQNQFHIPQP 188

Query: 182 NFGFKTNEDRFFKE 195
           +F       +  K 
Sbjct: 189 SFALMQQVSKKTKA 202


>gi|237795859|ref|YP_002863411.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Ba4 str. 657]
 gi|229260819|gb|ACQ51852.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Ba4 str. 657]
          Length = 1432

 Score = 77.7 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 6/192 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  SKND+IIEIGAV++      +R F  F+ P  R    +  +L  ITD+
Sbjct: 418 FVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPK-RIIPDKITELTSITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127
            ++DK +   I   F DF  +  +  +AHNA FDV FIN   + +  +  +      T  
Sbjct: 476 MVQDKETIDKILPRFIDFIGD--SVVVAHNADFDVSFINKNCKDLKIEFENSVMDTVTLS 533

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                +    + ++ +      +   HR+   A   + +L   + +M+     I      
Sbjct: 534 RFLFPELKRYKLNVIAKHLGISLENHHRAVDDAKATADILLKSF-EMLKEKEIITLHNLN 592

Query: 188 NEDRFFKEEKKT 199
            E       KK 
Sbjct: 593 KEFLGNINIKKE 604


>gi|324327507|gb|ADY22767.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 315

 Score = 77.7 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +    +  + L +L +  G      S H A  D    + VY K      +      T 
Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                   +     +   KRD    
Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207


>gi|168184630|ref|ZP_02619294.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Bf]
 gi|182672306|gb|EDT84267.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Bf]
          Length = 1432

 Score = 77.7 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 6/192 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  SKND+IIEIGAV++      +R F  F+ P  R    +  +L  ITD+
Sbjct: 418 FVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPK-RIIPDKITELTSITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127
            ++DK +   I   F DF  +  +  +AHNA FDV FIN   + +  +  +      T  
Sbjct: 476 MVQDKETIDKILPRFIDFIGD--SVVVAHNADFDVSFINKNCKDLKIEFENSVMDTVTLS 533

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                +    + ++ +      +   HR+   A   + +L   + +M+     I      
Sbjct: 534 RFLFPELKRYKLNVIAKHLGISLENHHRAVDDAKATADILLKSF-EMLKEKEIITLHNLN 592

Query: 188 NEDRFFKEEKKT 199
            E       KK 
Sbjct: 593 KEFLGNINIKKE 604


>gi|153833352|ref|ZP_01986019.1| DNA polymerase III, alpha subunit [Vibrio harveyi HY01]
 gi|148870361|gb|EDL69287.1| DNA polymerase III, alpha subunit [Vibrio harveyi HY01]
          Length = 204

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 9/176 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV+++D      +FQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPNMGDRAIEIGAVKIVDGEVV-DSFQQLMNP-GFRVSSFIEGYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L+  PS   + + F +F   +N   IAHNA FD  F++ EL+RI+     + +  +   
Sbjct: 66  MLRTAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDTELERIDCGYSGEFACSLLVA 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
               +  PS +       K      +    H AL D+ + + +++ M+    Q   
Sbjct: 124 RRLIQDAPSHKLGELVRYKNI---ENDGVFHRALADAQVTAKLWLLMVEELEQSGI 176


>gi|229031267|ref|ZP_04187273.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271]
 gi|228730025|gb|EEL80999.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271]
          Length = 315

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +    +  + L +L +  G      S H A  D    + VY K      + N    T 
Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEETNRKSDTK 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                   +     +   KRD    
Sbjct: 183 VLDETAVYEAVKKMLVRNKRDIEWV 207


>gi|49478968|ref|YP_037688.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|301055098|ref|YP_003793309.1| DNA polymerase III subunit epsilon [Bacillus anthracis CI]
 gi|49330524|gb|AAT61170.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|300377267|gb|ADK06171.1| DNA polymerase III subunit epsilon [Bacillus cereus biovar
           anthracis str. CI]
          Length = 315

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +    +  + L +L +  G      S H A  D    + VY K      +      T 
Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                   +     +   KRD    
Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207


>gi|153954051|ref|YP_001394816.1| DNA polymerase III PolC [Clostridium kluyveri DSM 555]
 gi|219854664|ref|YP_002471786.1| hypothetical protein CKR_1321 [Clostridium kluyveri NBRC 12016]
 gi|146346932|gb|EDK33468.1| PolC [Clostridium kluyveri DSM 555]
 gi|219568388|dbj|BAH06372.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1439

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 7/194 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTG    ND IIEIGA+++ +     + F  F+ P  R       +L GITDE
Sbjct: 426 FVIFDIETTGFSMTNDNIIEIGAIKIKEGKVVGK-FSEFVNPE-RPIPLTITQLTGITDE 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++  S   I  +F +F    N+  +AHNA FDVGFI    +   +  L     +    
Sbjct: 484 MVQNCESIKYILPKFMEFI--DNSVVVAHNANFDVGFIK---KNCMELNLKFKNPVMDTI 538

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
              +                 + IS  + H A+ D+    ++ ++      + N     +
Sbjct: 539 PLCKFLFPELKRFKLNVVAKHLDISLENHHRAVDDAGATCEILLRCFKMLKEKNILSLGD 598

Query: 189 EDRFFKEEKKTVPN 202
            ++ F         
Sbjct: 599 LNKEFLSNIDVKKQ 612


>gi|302384787|ref|YP_003820609.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
           WM1]
 gi|302195415|gb|ADL02986.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
           WM1]
          Length = 235

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 7/191 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D+ETTGLD K D+IIEIGAV+++    T   FQ F+ P  RK     + L GI+D 
Sbjct: 5   YIAVDLETTGLDPKLDKIIEIGAVKVVKGQMT-EHFQTFINP-FRKLESRVIILTGISDR 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P    +  EF +    +    + H+  FD  F+                    L+
Sbjct: 63  QLEASPGIGEVIGEFLE--FAEGLPVLGHHVIFDYSFLKRAAINEGYSFERRGIDTLKLA 120

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                 P  + +L + C  +GI  +    H AL D+     +Y +M     +       +
Sbjct: 121 RRF-MPPEEKKNLGAACGYFGIEQTMS--HRALADASAAHGLYQEMAKRYGKEAPEIFDS 177

Query: 189 EDRFFKEEKKT 199
           +   +K +K+ 
Sbjct: 178 QALIYKAKKEQ 188


>gi|169350436|ref|ZP_02867374.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552]
 gi|169292756|gb|EDS74889.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552]
          Length = 1439

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 4/172 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL   +D I E GAV++ +    +R  Q F+ P G+  S     L  IT+E
Sbjct: 402 YVAFDLETTGLSVIHDGITEFGAVKIKNGEVIDRM-QKFINP-GKTISSRISSLTNITNE 459

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K++P+   +  E  +FF +     +AHNA FDVGF+N  L+R N   +    I     
Sbjct: 460 MVKNEPTIDKVLPEIMEFFGD--CILVAHNASFDVGFLNENLRRSNMSEIKNPIIDSLAL 517

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                 P     L ++C+ Y +       H A  D+ +L DV+  M+    Q
Sbjct: 518 ARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAKVLGDVFNLMIHQIMQ 569


>gi|265993833|ref|ZP_06106390.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str.
           Ether]
 gi|262764814|gb|EEZ10735.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str.
           Ether]
          Length = 143

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/144 (40%), Positives = 87/144 (60%), Gaps = 2/144 (1%)

Query: 100 KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
            FD+GFINAEL R+++  +    I+DTL++ARRKHP   N L++LCKRYGI  SHR+ HG
Sbjct: 1   MFDLGFINAELARLDQAEITSEHIVDTLALARRKHPIGPNSLDALCKRYGIDNSHRTLHG 60

Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITK 218
           ALLD+ +L++VYI+++  G Q   G          + +      + L  R +PL  RI+ 
Sbjct: 61  ALLDAQILAEVYIELIG-GKQTALGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISD 119

Query: 219 EELDEHDKTIQTLGKNAIWDRYIS 242
            E   H   ++ +G  A+W +Y+S
Sbjct: 120 AERAAHAALVEKMGDKAVWKKYLS 143


>gi|228916240|ref|ZP_04079810.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843438|gb|EEM88516.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 315

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +    +  + L +L +  G      S H A  D    + VY K      +      T 
Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                   +     +   KR+    
Sbjct: 183 VLDETAVYEAVKEILVRNKRNIEWI 207


>gi|297568933|ref|YP_003690277.1| DNA polymerase III, epsilon subunit [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924848|gb|ADH85658.1| DNA polymerase III, epsilon subunit [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 238

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 73/183 (39%), Gaps = 9/183 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD E TGL+ + D I+ IGAV++ +       TF V++ P  R    ++  +H IT 
Sbjct: 40  FVVFDTELTGLNRQRDEIVSIGAVKIRNLQILVGETFHVYIKP-SRALPKDSTLIHRITP 98

Query: 68  EFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           + ++  P  +++  +F  F  +            A  +          ++   LD  R+ 
Sbjct: 99  QQIEQAPQLATVLPDFISFCGQALLVGHYVGLDVAFLNRACRRHYGAVVSNPCLDTMRLA 158

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYG----ITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            T +  + +    R  +++     G      +   + H A  D+   + +++ ++     
Sbjct: 159 QTYTEMQWQQYHDRFRMDATYSLAGLSQEYNLPDFTLHDAYEDALQTAYLFVFLIKKMRA 218

Query: 181 INF 183
              
Sbjct: 219 KGI 221


>gi|156975103|ref|YP_001446010.1| hypothetical protein VIBHAR_02830 [Vibrio harveyi ATCC BAA-1116]
 gi|156526697|gb|ABU71783.1| hypothetical protein VIBHAR_02830 [Vibrio harveyi ATCC BAA-1116]
          Length = 204

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 9/176 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV+++D      +FQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPNMGDRAIEIGAVKIVDGEVV-DSFQQLMNP-GFRVSSFIEGYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L+  P+   + + F +F   +N   IAHNA FD  F++AEL+RI      + +  +   
Sbjct: 66  MLRTAPNCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERIGCGYSGEFACSLLVA 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
               +  PS +       K      +    H AL D+ + + +++ M+    Q   
Sbjct: 124 RRLIQDAPSHKLGELVRYKNI---ENDGVFHRALADAQVTAKLWLLMVEELEQSGI 176


>gi|146293210|ref|YP_001183634.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32]
 gi|145564900|gb|ABP75835.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32]
          Length = 212

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 7/172 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL   +  R IEIGAV + +   T R F   + P  R +S            
Sbjct: 14  VVLDFETSGLSPNQGARAIEIGAVLIENGVITQR-FSELMDPGFRISSFIEDYTGISNQM 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P    + + F DF  + +   +AHNA FD  F++AE   I+ +     +   +L 
Sbjct: 73  LRNAAPC-HEVMARFADFIGDNH--LVAHNAAFDQRFLDAEFAHIHHE--YQGQFACSLL 127

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +ARR +P + N   +   RY    ++ + H AL D+ +   +++ M+    +
Sbjct: 128 LARRLYPLASNHQLATLVRYKQLPNNGTFHRALADAEMTGHLWLAMLADLQR 179


>gi|312601484|gb|ADQ90739.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 168]
          Length = 1447

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 3/202 (1%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K++ ++FD+ETTGL +  + IIE GA+ L +  +  +  Q F+ P G+  S         
Sbjct: 386 KLKFVIFDLETTGLSAFYNEIIEFGAIVLQNGIEIEKH-QFFIKPTGKIPSAITKITGIS 444

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                +   S+     +      +  +  +AHNA FD  F+    ++  K  L    I  
Sbjct: 445 QKMIDETAISWEIALEKITKIIKD--SVLVAHNAAFDFSFLEQFFRQKAKKSLKNPIIDT 502

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                        + L ++ KRY I       H A  D+ +L+ ++   +      N   
Sbjct: 503 LEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIWKNFLAELKSQNIND 562

Query: 186 KTNEDRFFKEEKKTVPNISLLK 207
            T+         +  P     K
Sbjct: 563 LTSLSEIKNSIFELRPEKVFPK 584


>gi|37677155|ref|NP_937551.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016]
 gi|320159243|ref|YP_004191621.1| DNA polymerase III subunit alpha [Vibrio vulnificus MO6-24/O]
 gi|37201700|dbj|BAC97521.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016]
 gi|319934555|gb|ADV89418.1| DNA polymerase III alpha subunit [Vibrio vulnificus MO6-24/O]
          Length = 204

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 82/177 (46%), Gaps = 9/177 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV+L++      TFQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPNLGDRAIEIGAVKLVNGEVV-ETFQQLMNP-GFRVSSFIESYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RIN D   + +  +   
Sbjct: 66  MLRSAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCDYSGEFACSLLVA 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
               +  PS +       K      +    H AL D+ + + +++ M+         
Sbjct: 124 RRLIQDAPSHKLGELVRYKNI---DNDGVFHRALADAQMTAKLWLLMVEELEHSGIA 177


>gi|109898663|ref|YP_661918.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
           T6c]
 gi|109700944|gb|ABG40864.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
           T6c]
          Length = 769

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 2/123 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG      RI EIGAV+++D      ++   + P  R+      +L GI+++
Sbjct: 604 YVVVDVETTGGCKPGHRITEIGAVKVIDSKVV-DSWSSLINPE-RRVPHFITRLTGISND 661

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P F  +  +   F  +        N  +    +                + +   
Sbjct: 662 MVEDAPLFCEVIDDLEAFMQDCIFVAHNVNFDYGFFKLEYGRLERAFSMPKLCTVREMRK 721

Query: 129 IAR 131
              
Sbjct: 722 YYP 724


>gi|15614254|ref|NP_242557.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus halodurans C-125]
 gi|10174308|dbj|BAB05410.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
          Length = 942

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 84/235 (35%), Gaps = 25/235 (10%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V DIETTG   ++ DRIIEIGAV + D      +F   + P  R   P   +L GI+
Sbjct: 4   RFVVIDIETTGQSVAQGDRIIEIGAVVIEDEEAV-ESFCTLVNPE-RSIPPFIEELTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE +K  P+F     E           ++AHN  FD+ F+   L+     PL    I   
Sbjct: 62  DEMVKGAPTFHQCIPELMSMLEG--GVFVAHNVHFDLSFLQKLLEHEGYGPLLVPIIDTV 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL--------LSDVYIKMMVGG 178
                         L++L ++ G+   +  +  +                     M +  
Sbjct: 120 ELSRILLPTEESYKLSALTEQLGLEHENPHRADSDAKVTADLLLLLLQKLRQLPLMTLQQ 179

Query: 179 SQINFG------------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
            ++                   +      E++       L   KP+  +  +EE+
Sbjct: 180 LELLSDSWISDMGPILRQLIEKKMHDHAREEEVFDIYRQLAIRKPVKMKPQEEEI 234


>gi|113970108|ref|YP_733901.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-4]
 gi|113884792|gb|ABI38844.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4]
          Length = 229

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 67/172 (38%), Gaps = 7/172 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL   +  R IEIGAV +     T R F   + P  R NS            
Sbjct: 31  VVLDFETSGLSPNQGARAIEIGAVLIEQGQITAR-FSELMNPGFRINSFIEDYTGISNQM 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P    +               +AHNA FD  F++AE  +I             L 
Sbjct: 90  LAHAAPCAEVMARFAA---FIGKHHLVAHNAAFDQRFLDAEFAQIGHHYPGQFGCSLLL- 145

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ARR +P + N   +   R+    S  + H AL D+ +   ++++M+    Q
Sbjct: 146 -ARRLYPEAINHQLATLVRHKQLPSDGTFHRALADAEMTGHLWLRMLADLKQ 196


>gi|157692739|ref|YP_001487201.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus pumilus SAFR-032]
 gi|157681497|gb|ABV62641.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032]
          Length = 930

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 7/169 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V DIETTG   K  D+II+I AV + +     R +  ++ P G+       +L GI 
Sbjct: 5   RFVVVDIETTGNSPKKGDKIIQIAAVVIENGQIVER-YSKYVNP-GKPIPGFIEQLTGIQ 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              + D   F  I  E +D          AHN  FD+ F+N EL+   K+ LD   I   
Sbjct: 63  QHMVDDAVFFEDIAQEVYDLIQGAYFV--AHNVHFDLNFLNDELKACGKNELDVLAIDTV 120

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                         L  L +   +   H   H A  D+ + + +++ ++
Sbjct: 121 EISRILYPELEGYKLTELSEELMLPHDHP--HRADSDAEVTAMLFLTLL 167


>gi|42782681|ref|NP_979928.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 10987]
 gi|42738607|gb|AAS42536.1| DNA polymerase III, epsilon subunit, putative [Bacillus cereus ATCC
           10987]
          Length = 315

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +    +  + L +L +  G      S H A  D    + VY K      +      T 
Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                   +     +   KRD    
Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207


>gi|229197718|ref|ZP_04324438.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
 gi|228585795|gb|EEK43893.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
          Length = 315

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +    +  + L +L +  G      S H A  D    + VY K      +      T 
Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKKKSNTE 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                   +     +   KRD    
Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207


>gi|221632241|ref|YP_002521462.1| DNA polymerase III subunit epsilon [Thermomicrobium roseum DSM
           5159]
 gi|221156344|gb|ACM05471.1| DNA polymerase III, epsilon subunit [Thermomicrobium roseum DSM
           5159]
          Length = 693

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 6/199 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGL     RIIEIGAV   D     R F V + P+ R+     ++L GI DE
Sbjct: 86  FVALDVETTGLRPARHRIIEIGAVRYEDGCCVER-FSVLVNPH-RRLPVYIVRLTGIRDE 143

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   PSF  + + F        +  I +N  FD+ F+NAEL+RI + PL    +     
Sbjct: 144 DLLTAPSFVDVAAAF--RVFLGESTVIGYNVGFDLDFLNAELRRIGQGPLPNPALDVLPL 201

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  + R DL+++C+  G+     ++H AL D+   + +Y+ ++    Q+ +   ++
Sbjct: 202 ARALLTANGRYDLDAICRSIGLA--RGTRHRALPDAEATAVLYLHLVERAEQVGYRSPSD 259

Query: 189 EDRFFKEEKKTVPNISLLK 207
                      V  ++  +
Sbjct: 260 LQPAATRRTIVVEPVARGR 278


>gi|323489585|ref|ZP_08094812.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
 gi|323396716|gb|EGA89535.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
          Length = 1435

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 7/175 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+  + S   + L GITD+
Sbjct: 421 FVVFDLETTGLSAVYDTIIELAAVKIKGGQIIDK-FESFANPH-HELSSTTIDLTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+ P    +  ++ +     +   +AHNA FD+GF+    ++   D +  +       
Sbjct: 479 MVKNAPEVEEVIRKYHE--WAGDHIMVAHNASFDMGFLYVCYKKYGIDTVHATIDTL-EL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     + LN+L K++GI       H A+ D+   S +   ++    Q   
Sbjct: 536 ARMLHPELKNHRLNTLAKKFGIE--LTQHHRAIYDTEATSYLLTHLLKEADQKGI 588


>gi|258511090|ref|YP_003184524.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477816|gb|ACV58135.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 240

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 85/231 (36%), Gaps = 13/231 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D ETTGL     R++E+  VE+    +    +   + P G    PEA  +H ITD
Sbjct: 7   RFVVIDTETTGLPPDG-RVVELALVEVGLDREPQIVYSALVDP-GCPIPPEASAVHHITD 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +  KP    I+ +   +  +  A  +AHNA+FD G +    +                
Sbjct: 65  RDVAGKPRLMQIWPKVMGYIGD--AILVAHNAEFDRGMLPETGRPWICS---------KR 113

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                   + ++    L    GI +     H AL D+ + + V+ + +    +  +    
Sbjct: 114 LAQHLWRDAPKHSNQVLRYWLGIDVEVGLPHRALGDAIVTAHVFQRELRAYLEAGYPDDV 173

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
                F E    V  +   K        +  + LD   + +Q L  +  W 
Sbjct: 174 EALIAFAESPIEVQTMPFGKHKGMPLKDVPLDYLDRALRNMQDLSPDLRWS 224


>gi|206976138|ref|ZP_03237047.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           H3081.97]
 gi|217961012|ref|YP_002339580.1| DNA polymerase III subunit epsilon [Bacillus cereus AH187]
 gi|222097065|ref|YP_002531122.1| DNA polymerase iii subunit epsilon [Bacillus cereus Q1]
 gi|229140223|ref|ZP_04268781.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
 gi|206745592|gb|EDZ56990.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           H3081.97]
 gi|217066526|gb|ACJ80776.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH187]
 gi|221241123|gb|ACM13833.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
 gi|228643309|gb|EEK99582.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
          Length = 315

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +    +  + L +L +  G      S H A  D    + VY K      +      T 
Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCAFIEEEAKRKSNTE 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                   +     +   KRD    
Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207


>gi|229084648|ref|ZP_04216916.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-44]
 gi|228698671|gb|EEL51388.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-44]
          Length = 930

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I ++ AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQVAAVVVEDGEIL-EIFSSFVNPE-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            ++ +K  P F  +     +          AHN  FD  F+  EL++     ++  +I  
Sbjct: 62  DEDLVKQAPLFCDVAPMIVELLQGAYFV--AHNVHFDWNFLREELKQAGYGEVNCQKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+ + ++++++ +    Q+  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALVTAELFLQFLNQLEQLPL 175


>gi|325983091|ref|YP_004295493.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
 gi|325532610|gb|ADZ27331.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
          Length = 463

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 6/173 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG+    DRI EIG +   +  +T R +   + P G    P   +L GIT +
Sbjct: 8   YVLLDLETTGVTPTQDRITEIGLIRYENGVETGR-WNTLINP-GINIPPFIQRLTGITQD 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+FS ++     +     A   AHNA+FD GF+  E +RI        +++ T+ 
Sbjct: 66  MVDHAPTFSQVYETLLQWL--DQAVLCAHNARFDYGFLKNEFKRIGVT--FQKKLLCTVK 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++R+ +P   +   +        I  +          + + + + M   G   
Sbjct: 122 LSRKLYPQHHSHSLNAIIERFRLICDQRHRAMGDTEMIAAFIDVAMRELGEAT 174


>gi|228940696|ref|ZP_04103259.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973614|ref|ZP_04134196.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980172|ref|ZP_04140486.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
 gi|228779530|gb|EEM27783.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
 gi|228786075|gb|EEM34072.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818940|gb|EEM65002.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 324

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 19  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 77  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPTNKVIDTVFL 134

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 135 AKKYMKHAPNHKLETLKRMLGIRLSSHNALDDCITCAAVYQ 175


>gi|196044660|ref|ZP_03111895.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225865799|ref|YP_002751177.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|229186057|ref|ZP_04313227.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
 gi|196024695|gb|EDX63367.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225786021|gb|ACO26238.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|228597476|gb|EEK55126.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
          Length = 970

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +      I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|118479040|ref|YP_896191.1| DNA polymerase III, subunit alpha [Bacillus thuringiensis str. Al
           Hakam]
 gi|118418265|gb|ABK86684.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
           Hakam]
          Length = 972

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +      I     
Sbjct: 478 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 536 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 593

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 594 LNDSMGQGDAYKRGRP 609


>gi|42782909|ref|NP_980156.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987]
 gi|42738836|gb|AAS42764.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus ATCC 10987]
          Length = 970

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +      I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKEVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|324327715|gb|ADY22975.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 970

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +      I     
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|152968358|ref|YP_001364142.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans
           SRS30216]
 gi|151362875|gb|ABS05878.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans
           SRS30216]
          Length = 224

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 8/184 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+ + R  V D+ETTGL  +  DR+++I    L       R++   + P+     P    
Sbjct: 20  RRYRHRYAVLDVETTGLRPETGDRVVQIAVTLLDARGTVERSWSSLVDPHR---DPGPTH 76

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT E L   P+F+ +        +     ++AHNA+FD  F++AE++          
Sbjct: 77  VHGITAERLAGAPTFAQLAPTVAGLLDG--RVFVAHNARFDWKFVSAEMRAAGVHLPVRQ 134

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           R+       R   P     L +L + +G+       H A  D+ +L +V  + ++  +  
Sbjct: 135 RLCTWELAQRLDLPVENLKLATLAEHWGVR--QLRPHDAEDDTRVLVEVLREELLDAAGQ 192

Query: 182 NFGF 185
               
Sbjct: 193 RLDL 196


>gi|310658999|ref|YP_003936720.1| DNA polymerase III polc [Clostridium sticklandii DSM 519]
 gi|308825777|emb|CBH21815.1| DNA polymerase III PolC [Clostridium sticklandii]
          Length = 1417

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 7/227 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  + +D I EIGAV++ +      +F   + P+      +  +L GIT++
Sbjct: 406 YVVFDIETTGFSNTSDEITEIGAVKIRNKEII-DSFGELINPH-MPIPLKVQELTGITND 463

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KDKPS   +   F +F     +  +AHN+ FD+GFI A+ +R+N    +       LS
Sbjct: 464 LIKDKPSIDEVLPRFLEFVGS--SILVAHNSDFDMGFIRAKAKRLNLAFENKDIDTLKLS 521

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                +                  +H         + L+   +++M++      F    +
Sbjct: 522 RILLPNLKRHKLNLITNHLGISLENHHRAVDDAKATALVFIKFMEMLIDKDINTFEMVND 581

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           +      +     +I+++ RD      + K     H   I    KN 
Sbjct: 582 KLGKLDYKSIPSNHITIIARDYTGLKNLYKLISASH---IDYFYKNP 625


>gi|157375547|ref|YP_001474147.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157317921|gb|ABV37019.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 208

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 83/202 (41%), Gaps = 13/202 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M  +     IV D ETTGL   + DR IEIGAV+L D      TFQ  + P G + S   
Sbjct: 1   MTTRAANSVIVLDFETTGLSPNQGDRAIEIGAVKLQDGIVV-DTFQELMNP-GFRVSGFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+  L   P  + + ++F  F    N   +AHNA FD  F++   +        
Sbjct: 59  EGYTGITNAMLNSAPPCNEVMAQFAGFIGNDN--LVAHNASFDKRFLD--AELDGIGRTY 114

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                 ++ IARR + ++ N        Y    +    H AL DS + + +++KM+    
Sbjct: 115 GGEFACSMLIARRLYQAAPNHKLGGLVEYKQIENDGVFHRALADSEVTAKLWLKMLEDMQ 174

Query: 180 ------QINFGFKTNEDRFFKE 195
                   +F       +  K 
Sbjct: 175 DDYQIASPSFNLMQQLSKKSKS 196


>gi|114047347|ref|YP_737897.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-7]
 gi|113888789|gb|ABI42840.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7]
          Length = 239

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 67/172 (38%), Gaps = 7/172 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL   +  R IEIGAV +     T R F   + P  R NS            
Sbjct: 41  VVLDFETSGLSPNQGARAIEIGAVLIEQGQITAR-FSELMNPGFRINSFIEDYTGISNQM 99

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P    +               +AHNA FD  F++AE  +I             L 
Sbjct: 100 LAHAAPCAEVMARFAA---FIGKHHLVAHNAAFDQRFLDAEFAQIGHQYPGQFGCSLLL- 155

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ARR +P + N   +   R+    +  + H AL D+ +   ++++M+    Q
Sbjct: 156 -ARRLYPEAINHQLATLVRHKQLPTDGTFHRALADAEMTGHLWLRMLADLKQ 206


>gi|212640084|ref|YP_002316604.1| Exonuclease [Anoxybacillus flavithermus WK1]
 gi|212561564|gb|ACJ34619.1| Exonuclease [Anoxybacillus flavithermus WK1]
          Length = 222

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 4/171 (2%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTG      DR+IEIGAV++       + TF  ++ PN R   P  ++L  IT+E
Sbjct: 31  VFDTETTGFHVATVDRLIEIGAVQVKGTAVIEDETFHTYVNPN-RDLPPVIVELTNITEE 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K  P+      +F+ F  ++ +     +      F+     R  K        IDTL 
Sbjct: 90  KVKHAPTAIEALQQFFQFVEQKQSVCFVGHYISFDLFVLKHELRREKMKFRKPTFIDTLD 149

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +     PS          +         +H A+ D+   + ++++++    
Sbjct: 150 LIGFIAPSYDMRDLERYAQA-FGTRMYERHSAIGDALTTAYLFVELLQQFR 199


>gi|54302908|ref|YP_132901.1| putative DNA polymerase III [Photobacterium profundum SS9]
 gi|46916332|emb|CAG23101.1| putative DNA polymerase III [Photobacterium profundum SS9]
          Length = 214

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 15/194 (7%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL   + DR IEIGAV + +    +R FQ  + P  R +S          + 
Sbjct: 16  IVLDFETTGLSPTQGDRAIEIGAVLMENGEVVDR-FQKLMNPGFRVSSFIESYTGITNNM 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDPSRIIDTL 127
                P    +  +F DF  + N   +AHNA FD  F++AEL  IN+    + +  +   
Sbjct: 75  LRTAAPC-DEVMDQFTDFIGDYN--LVAHNASFDKRFLDAELDIINRSYGGEFACSMLIA 131

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS------QI 181
               +  P+ +       K           H AL DS + + ++++M+          Q 
Sbjct: 132 RRLYQNAPNHKLGSLVAYKNI---DHDGVFHRALADSEMTAKLWLQMLEDMRNQFHIIQP 188

Query: 182 NFGFKTNEDRFFKE 195
           +F       +  K 
Sbjct: 189 SFTLMQQVSKKTKA 202


>gi|240146857|ref|ZP_04745458.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
 gi|257200990|gb|EEU99274.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
          Length = 697

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 7/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG     ++IIEIGAV+++    T R F  F+ P          +L  I D+
Sbjct: 475 YVVFDLETTGFSPDKNKIIEIGAVKVVHGEITER-FSTFVNPE-VPIPYRIEELTSIRDD 532

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   +I  +F +F  +  A  +AHNA FD+ FI    +R   +          L+
Sbjct: 533 MVIDAPKIETILPQFMEFCGD--AIMVAHNADFDMSFIIKNCERQGIEKEFTIIDTVALA 590

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R  L+++ K  G++    + H A+ D+   +++++K +             
Sbjct: 591 RILLPQ-LNRFKLDTVAKALGVS--LENHHRAVDDAGCTAEIFVKFVKMLHDRGMETLDQ 647

Query: 189 EDRFFKEEKKTVPNIS 204
            ++  +   +T+  ++
Sbjct: 648 VNQMGQASPETIMKMN 663


>gi|228916455|ref|ZP_04080021.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843034|gb|EEM88116.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 1433

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F  +  +     +AHNA FD+GFIN   ++   +      I     
Sbjct: 476 MLTDAPEVDEVFKKFEKWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK+    I     H A+ D+     + +KM+    +  F +   
Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +         
Sbjct: 592 LNDSMGQGDAYKRGRP 607


>gi|309808831|ref|ZP_07702716.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
 gi|308167957|gb|EFO70090.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
          Length = 946

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+   +      ++  +  
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 462

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +              Q+     HN +FD+GF+NA L+R N D +    +     
Sbjct: 463 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 522

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++    +    F+  
Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 577

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                 +  K        K +      I K
Sbjct: 578 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 607


>gi|90023051|ref|YP_528878.1| DNA-directed DNA polymerase [Saccharophagus degradans 2-40]
 gi|89952651|gb|ABD82666.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40]
          Length = 215

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 75/172 (43%), Gaps = 7/172 (4%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV L +    +R FQ  + P G + S       GI + 
Sbjct: 16  VVLDFETTGLSPDMGDRAIEIGAVRLHNGEIVDR-FQALMNP-GFQISGFIASYTGIDNS 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P    +   F ++    N   +AHNA FD  F++   +              +L 
Sbjct: 74  MLAKAPPCDEVMDAFANYIGNDN--LVAHNASFDKRFLD--AELYRIGRSYSGDFTCSLL 129

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ARR  P++ N       ++    S  + H AL DS + + V++ M++   Q
Sbjct: 130 AARRLFPNAENHKLGTLVKHTKLQSDGAFHRALYDSEMTAKVWMVMLMQLQQ 181


>gi|228909419|ref|ZP_04073244.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
 gi|228850196|gb|EEM95025.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
          Length = 318

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 129 AKKYMKHAPNHKLETLKRILGIRLSSHNAFDDCITCAAVYQ 169


>gi|257784354|ref|YP_003179571.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
 gi|257472861|gb|ACV50980.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
          Length = 342

 Score = 76.9 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 68/192 (35%), Gaps = 7/192 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGLD     IIEI A++++D   T   F   + P  R+    A  ++ IT+ 
Sbjct: 78  YVVVDLETTGLDVHYCEIIEIAALKVVDGKIT-EEFSSLIHPP-REIPSGATAINHITNH 135

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+ P+   +  +F  F        I HN+      +  E         D         
Sbjct: 136 MVKNAPTLDKVIPQFDTFVKG--FPLIGHNSLRYDAIVLEENFFRRDFLCDYVWYDTYKL 193

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +   P  +    +          H   H AL D ++   +Y KM           K  
Sbjct: 194 ARQILEPPYKLINIAKRLNV---KQHGKAHRALADCYMTYGIYEKMREISIATTENVKCI 250

Query: 189 EDRFFKEEKKTV 200
           E    K  + T 
Sbjct: 251 EKYTDKNTESTK 262


>gi|295397429|ref|ZP_06807516.1| DNA polymerase III [Aerococcus viridans ATCC 11563]
 gi|294974330|gb|EFG50070.1| DNA polymerase III [Aerococcus viridans ATCC 11563]
          Length = 314

 Score = 76.9 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ DIETTGL   ND I+E+ A+ + D+   +RTF   + PN R  S     L GI++ 
Sbjct: 25  YVMIDIETTGLKPSNDEILELSAIRIRDHQ-MDRTFSTLVQPN-RPISGFITNLTGISNH 82

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P       EF DF  E     + +N  FD+ FI      +   P+    +     
Sbjct: 83  MVMTAPPIEQAIPEFLDFIQE--DIILGYNVNFDLSFIYDTAVNLYNFPVRNDYLDVLTI 140

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +    +  + L ++ + YGI+      H  L D ++  +VY ++     Q
Sbjct: 141 ARKLVTETPNHKLGTMAQFYGISYEGA--HRGLTDCYITVEVYNQLFNQAKQ 190


>gi|254443946|ref|ZP_05057422.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Verrucomicrobiae bacterium DG1235]
 gi|198258254|gb|EDY82562.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Verrucomicrobiae bacterium DG1235]
          Length = 205

 Score = 76.9 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV +     T R FQ  + P  R  S       GIT+ 
Sbjct: 8   VVLDFETTGLSPSLGDRAIEIGAVRIEGGEVTGR-FQELMNPGCR-ISGFIEDYTGITNG 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D      +   F +F    N   +AHNA FD  F++AEL RI++  +     + ++ 
Sbjct: 66  MLRDAEPCEVVMERFAEFIGGHN--LVAHNASFDQRFLDAELARISQRRV--GDFVCSML 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ARR    + N       RY         H AL DS + + ++I+M+
Sbjct: 122 AARRLFQDAPNHQLGTLVRYANFSVDGVFHRALYDSEMTTKLWIRML 168


>gi|258511618|ref|YP_003185052.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478344|gb|ACV58663.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 952

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 4/107 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I+ D+ETTGLD +   I+EIGA+ +        TF   + P  R    E  +L G++
Sbjct: 1   MEWIIVDLETTGLDPERAEILEIGALRVRGGEIV-DTFHTLVRPE-RPIPDEITRLTGLS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           D  +   PS       F       +     H+  F+  F+   + R 
Sbjct: 59  DADVAGAPSEREALMRFAG--FAGHTPMAGHHWVFERSFLLHRVARY 103


>gi|229824922|ref|ZP_04450991.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC
           49176]
 gi|229790925|gb|EEP27039.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC
           49176]
          Length = 1463

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 12/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG   KN RIIEIGAV+++     ++ F  F+ P  +    E  KL  IT + 
Sbjct: 436 VVFDIETTGFGPKNCRIIEIGAVKVMGGKVIDK-FSAFVNPK-QSIPEEITKLTSITQDM 493

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P    I   F +F        +AHNA FD  FI   ++R+  +         T+S 
Sbjct: 494 VINEPEIDVILPAFLEFCKGCF--LVAHNASFDTSFIFENMKRLGLNEDFTIADTVTISR 551

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-----MVGGSQINFG 184
                      L+++ +R GIT+ H   H A+ D+   +++YIK+        G+++   
Sbjct: 552 VLLPG-LKNYKLDTVAERLGITLEH--HHRAVDDAGCTAEIYIKLCELAVTKYGNELLGN 608

Query: 185 FKTNED 190
           F TNE 
Sbjct: 609 FNTNEG 614


>gi|83310642|ref|YP_420906.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
 gi|82945483|dbj|BAE50347.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
          Length = 412

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 8/167 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            +VFD ETTGL   + D+I+ I  V +++    +  +F   + P GR    E+++ HGIT
Sbjct: 219 FVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNP-GRPIPAESIRYHGIT 277

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ + DKP    +  +F  +  +  A  +AHNA FD+ F+    + +      P      
Sbjct: 278 DDMVVDKPPAGVVLPQFRSYVAD--AVLVAHNAAFDLKFLRMREKDMGIRFDIPVLDTMI 335

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           LS      P + + L+ +C RYGI I    +H AL D+ + + V ++
Sbjct: 336 LS-NFLDGPDAGHSLDDICDRYGIEI--TDRHTALGDAMVTAAVLLR 379


>gi|229016898|ref|ZP_04173826.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1273]
 gi|229023104|ref|ZP_04179618.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1272]
 gi|228738250|gb|EEL88732.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1272]
 gi|228744459|gb|EEL94533.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1273]
          Length = 934

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEVHCPKVDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++I+ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFIQFLNEIEKLPL 175


>gi|121998681|ref|YP_001003468.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1]
 gi|121590086|gb|ABM62666.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1]
          Length = 707

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 8/176 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            ++FD ETTGL   + D II I  V +++        F+  + P GR     ++K HGI 
Sbjct: 514 FVIFDTETTGLAPSEGDEIISIAGVRMVNGRILEGECFEQLVNP-GRPIPKASIKFHGIR 572

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE + DKP  +++  +F  F  +  +  +AHNA FD+ FI  +  +      +P      
Sbjct: 573 DEMVADKPGIATVLPQFSAFVGD--SVLVAHNAAFDMKFIRLKEGQCGLKFENPVLDTLL 630

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           LS+    H +  + L ++  R G+ I    +H AL D+ +  +++ +M+    +  
Sbjct: 631 LSVFLHDH-TPEHTLEAIANRLGVEI--SGRHTALGDTLVTGEIFAQMLPLLEERG 683


>gi|228922317|ref|ZP_04085624.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837372|gb|EEM82706.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 318

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169


>gi|75760700|ref|ZP_00740725.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228902109|ref|ZP_04066273.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
 gi|74491818|gb|EAO55009.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228857535|gb|EEN02031.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
          Length = 318

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169


>gi|299823038|ref|ZP_07054924.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
 gi|299816567|gb|EFI83805.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
          Length = 1470

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++ +      TF+ F+ P GR  S   + L GITD+
Sbjct: 454 YVVFDVETTGLSAVYDTIIELAAVKMENGQVV-DTFESFIDP-GRPLSATIINLTGITDD 511

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK      ++   F ++  +  A  +AHNA FD+GF+N    +   D  + + I     
Sbjct: 512 MLKGSDDIETVLKRFKEWCGD--AVLVAHNASFDMGFLNTAYSKAGIDKAENAVIDTLEL 569

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L K++ I       H A+ D+   + +  K++   ++++     N
Sbjct: 570 ARFLYPHFKNHRLNTLTKKFNIV--LEQHHRAVFDAEATAYLAWKLIKDANEMHEITNHN 627

Query: 189 EDRFFKEEKKTVPNISLL 206
           +   +  E +        
Sbjct: 628 QLNNYMGEGEAYKRARPF 645


>gi|229162442|ref|ZP_04290403.1| DNA polymerase III alpha subunit [Bacillus cereus R309803]
 gi|228620921|gb|EEK77786.1| DNA polymerase III alpha subunit [Bacillus cereus R309803]
          Length = 315

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLLEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166


>gi|229061173|ref|ZP_04198523.1| DNA polymerase III alpha subunit [Bacillus cereus AH603]
 gi|228718044|gb|EEL69684.1| DNA polymerase III alpha subunit [Bacillus cereus AH603]
          Length = 318

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +       + I     
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNNVIDTVFL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169


>gi|161507686|ref|YP_001577640.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348675|gb|ABX27349.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 1438

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 421 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH---HPLSEQTINLTSIT 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R     +    +     
Sbjct: 477 DEMVSAADDEDVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLSEITQPVVDTLEV 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y +++ H   H A  D+     +  K++    +       N
Sbjct: 537 SRLLHPEQNRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMYKLLDAFKKKYNEDNLN 594

Query: 189 EDRFFKEEKKTVPNISLL 206
               +    +        
Sbjct: 595 NLNGYAAHGEVYKRARPS 612


>gi|258653407|ref|YP_003202563.1| hypothetical protein Namu_3243 [Nakamurella multipartita DSM 44233]
 gi|258556632|gb|ACV79574.1| DNA polymerase III, epsilon subunit [Nakamurella multipartita DSM
           44233]
          Length = 613

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/203 (23%), Positives = 74/203 (36%), Gaps = 4/203 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG     + I EIGAV++         F   + P GR   P+   L GIT+ 
Sbjct: 49  FVVVDLETTGGSPATEAITEIGAVKVRGGQVLGE-FATLVDP-GRTIPPQITMLTGITNA 106

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P  SS+   F +    + +  +AHNA+FDVGF+ A   R       P+ +     
Sbjct: 107 MVYDAPRISSVLPAFLE--FARGSVLVAHNARFDVGFLRAACARQQVPWPGPAVVDTVRL 164

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +    +    +        +    R  H AL D+    DV   +      +       
Sbjct: 165 ARKVLPRAEAPSVRLSALAALLGARTRPDHRALTDARATVDVLHALFERLGSLGVHSLAE 224

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                ++          L    P
Sbjct: 225 LQDASRDVAPQRRRKRWLADRLP 247


>gi|229047293|ref|ZP_04192892.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
 gi|228724035|gb|EEL75381.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
          Length = 318

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169


>gi|229080815|ref|ZP_04213333.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
 gi|229191695|ref|ZP_04318674.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
 gi|228591857|gb|EEK49697.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
 gi|228702549|gb|EEL55017.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
          Length = 318

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169


>gi|239995207|ref|ZP_04715731.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC
           27126]
          Length = 711

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 5/164 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG +S  +RI EIG V+L+   + +R FQ  L P  R+      +L GI+D+
Sbjct: 543 YVVVDIETTGGNSSYNRITEIGMVKLVGGKEVDR-FQTLLNPQ-RRIPSNITRLTGISDD 600

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDTL 127
            + D P F+ +     +    ++A ++AHN  FD GFI  E  +            +  +
Sbjct: 601 MVADAPLFAEVAEHVAN--FTEDAVFVAHNVNFDYGFIKQEFARLEQSFRRPKMCTVREM 658

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                  PS      +      +   HR+   A   + LL   +
Sbjct: 659 RRTYPGLPSYSLANLTKHFHIEMEQHHRALSDAKAAAELLKLAF 702


>gi|218898703|ref|YP_002447114.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           G9842]
 gi|218544955|gb|ACK97349.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           G9842]
          Length = 315

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166


>gi|114565211|ref|YP_752725.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
 gi|114336504|gb|ABI73886.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
          Length = 204

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 4/173 (2%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV+L++      TFQ  + P GR+ +    +  GI+++
Sbjct: 8   VVLDFETTGLSPDNGDRAIEIGAVKLVNGQIV-DTFQELINP-GRRVNSFIEQYTGISND 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK  P+   +  +F  F +  N      +             +++        ++ +  
Sbjct: 66  MLKHAPTSKQVMGQFAKFIDGFNLVAHNASFDKKFLDAEFSHSKLHYSGQFACSLLLSRR 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL-LSDVYIKMMVGGSQ 180
           I++         L    +     + HR+   A + SHL L  + +  +    Q
Sbjct: 126 ISQDAPNHKLGTLVDHHQLPNDGVFHRALADATMTSHLWLHQIDLLQLQLPKQ 178


>gi|319426278|gb|ADV54352.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200]
          Length = 212

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 7/172 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL   +  R IEIGAV + +   T R F   + P  R ++            
Sbjct: 14  VVLDFETSGLSPNQGARAIEIGAVLIENGVITQR-FSELMDPGFRISTFIEDYTGISNQM 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P    + + F DF  + +   +AHNA FD  F++AE   I+       +   +L 
Sbjct: 73  LRNAAPC-HEVMARFADFIGDNH--LVAHNAAFDQRFLDAEFAHIHHQ--YQGQFACSLL 127

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +ARR +P + N   +   RY    ++ + H AL D+ +   +++ M+    +
Sbjct: 128 LARRLYPLASNHQLATLVRYKQLPNNGTFHRALADAEMTGHLWLAMLADLQR 179


>gi|260101367|ref|ZP_05751604.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075]
 gi|260084819|gb|EEW68939.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075]
          Length = 1436

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH---HPLSEQTINLTSIT 474

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R     +    +     
Sbjct: 475 DEMVSAADDEDVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLSEITQPVVDTLEV 534

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y +++ H   H A  D+     +  K++    +       N
Sbjct: 535 SRLLHPEQNRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMYKLLDAFKKKYNEDNLN 592

Query: 189 EDRFFKEEKKTVPNISLL 206
               +    +        
Sbjct: 593 NLNGYAAHGEVYKRARPS 610


>gi|323466335|gb|ADX70022.1| DNA polymerase subunit III [Lactobacillus helveticus H10]
          Length = 1436

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH---HPLSEQTINLTSIT 474

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R     +    +     
Sbjct: 475 DEMVSAADDEDVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLSEITQPVVDTLEV 534

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y +++ H   H A  D+     +  K++    +       N
Sbjct: 535 SRLLHPEQNRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMYKLLDAFKKKYNEDNLN 592

Query: 189 EDRFFKEEKKTVPNISLL 206
               +    +        
Sbjct: 593 NLNGYAAHGEVYKRARPS 610


>gi|157363106|ref|YP_001469873.1| DNA polymerase III PolC [Thermotoga lettingae TMO]
 gi|157313710|gb|ABV32809.1| DNA polymerase III, alpha subunit [Thermotoga lettingae TMO]
          Length = 1379

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 4/104 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R ++ DIETTGL      IIEIGAV + +   T+  F  F+ P+ + N    ++   ITD
Sbjct: 369 RYVIVDIETTGLHPMFSEIIEIGAVAIENGQITDE-FHSFVKPSEKLN-AFTVQFTKITD 426

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           + L ++PS   +  +F +F  +     +AHNA FD  F+   ++
Sbjct: 427 QMLANQPSIEEVLPKFMEFCKD--TTLVAHNANFDYRFLRYWIE 468


>gi|308068695|ref|YP_003870300.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
 gi|305857974|gb|ADM69762.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
          Length = 1438

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 6/174 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL    ++IIEI AV++ D  + +R +  F+ P+ R       +L  I DE
Sbjct: 421 YVVFDIETTGLSVTQNKIIEIAAVKMHDGKEVDR-YATFVNPHER-IPYNIQQLTNINDE 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  EF       +A  +AHNA+FDVGFI A L+ +    +    +     
Sbjct: 479 MVKDAPDVEPVMKEFVA--FAGDAVLVAHNARFDVGFIQATLRNMGLPEMTNPVLDTLEL 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
                     + LN+L  +Y +     S H A+ D+  L++V   ++    QI 
Sbjct: 537 ARLLFPTMKNHRLNTLTTKYKVA--LESHHRAIDDTVALTEVLNGLLNDAEQIK 588


>gi|229111034|ref|ZP_04240593.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
 gi|228672397|gb|EEL27682.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
          Length = 318

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169


>gi|326941329|gb|AEA17225.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 315

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPTNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNALDDCITCAAVYQ 166


>gi|228959796|ref|ZP_04121471.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228799926|gb|EEM46868.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 318

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169


>gi|313678200|ref|YP_004055940.1| DNA polymerase III subunit alpha [Mycoplasma bovis PG45]
 gi|312950476|gb|ADR25071.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           bovis PG45]
          Length = 1458

 Score = 76.1 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 2/188 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FDIETTGL  K   IIE GAV++    K  +T Q F+ P  +  S            
Sbjct: 424 YVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGKTTQFFIKPKDKIGSFTTELTGITQQM 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                        + +D  +      IAHNAKFD  F+  + +  N      + I   ++
Sbjct: 484 LDSKGLYIKEGLEKIYDCLDG--KIAIAHNAKFDFNFLKEQFRLNNMQFPRVTVIDTLVA 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R+ L  +  R G+       H    D+ +L++V++ ++   +        +
Sbjct: 542 SRIGFPGYKRHKLEDVASRLGVVYDPNVAHRGDYDAKVLANVWVNIISELNAKGIFTFDD 601

Query: 189 EDRFFKEE 196
             ++   E
Sbjct: 602 LSKYSSNE 609


>gi|228966505|ref|ZP_04127558.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793227|gb|EEM40777.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 315

 Score = 76.1 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166


>gi|323694146|ref|ZP_08108325.1| DNA polymerase III subunit epsilon [Clostridium symbiosum
          WAL-14673]
 gi|323501863|gb|EGB17746.1| DNA polymerase III subunit epsilon [Clostridium symbiosum
          WAL-14673]
          Length = 226

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50
           +  D+ETTGLD K+D+IIEIGAV ++D  +   TF  F+ P
Sbjct: 26 YVAIDLETTGLDPKHDKIIEIGAVLVIDG-EIKETFSTFVNP 66


>gi|194017045|ref|ZP_03055658.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           pumilus ATCC 7061]
 gi|194011651|gb|EDW21220.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           pumilus ATCC 7061]
          Length = 930

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 7/178 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V DIETTG   K  D+II+I AV + +     R +  ++ P G+       +L GI 
Sbjct: 5   RFVVVDIETTGNSPKKGDKIIQIAAVVIENGQIVER-YSKYVNP-GKAIPGFIEQLTGIQ 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              + D   F  I  E +D          AHN  FD+ F+N EL+   K+ LD   I   
Sbjct: 63  QHMVDDAVFFEDIAQEVYDLIQGAYFV--AHNVHFDLNFLNDELKACGKNELDVLAIDTV 120

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                         L  L +   +   H   H A  D+ + + +++ ++   +     
Sbjct: 121 EISRILYPELEGYKLTELSEELMLPHDHP--HRADSDAEVTAMLFLTLLHQLTHTPPN 176


>gi|46202557|ref|ZP_00053013.2| COG5002: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 711

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 8/167 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            +VFD ETTGL   + D+I+ I  V +++    +  +F   + P GR    E+++ HGIT
Sbjct: 518 FVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNP-GRSIPAESIRYHGIT 576

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE + DKP    +  +F  +  +  A  +AHNA FD+ F+    + +      P      
Sbjct: 577 DEMVIDKPPAGVVLPQFRSYVAD--AVLVAHNAAFDLKFLRMREKEMGVRFDSPVLDTMI 634

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           LS      P + + L+ +C+RYGI I    +H AL DS + + V ++
Sbjct: 635 LS-NFLDGPEAGHSLDDICERYGIEI--TDRHTALGDSMVTAAVLLR 678


>gi|229151805|ref|ZP_04280004.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
 gi|228631618|gb|EEK88248.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
          Length = 318

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHA--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 129 AKKYMKQAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169


>gi|228953879|ref|ZP_04115918.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805847|gb|EEM52427.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 315

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166


>gi|229128882|ref|ZP_04257858.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
 gi|228654587|gb|EEL10449.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
          Length = 318

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    ++ + L +L +  GI +S  +     +    +  
Sbjct: 129 AKKYMKHATNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169


>gi|206969177|ref|ZP_03230132.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH1134]
 gi|229071110|ref|ZP_04204336.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
 gi|206736218|gb|EDZ53376.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH1134]
 gi|228712050|gb|EEL63999.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
          Length = 315

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166


>gi|254482913|ref|ZP_05096149.1| exonuclease, DNA polymerase III, epsilon subunit family [marine
           gamma proteobacterium HTCC2148]
 gi|214036785|gb|EEB77456.1| exonuclease, DNA polymerase III, epsilon subunit family [marine
           gamma proteobacterium HTCC2148]
          Length = 206

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 80/172 (46%), Gaps = 7/172 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   + DR IEIGAV +     T R FQ  + P GR+         GIT+ 
Sbjct: 8   VVLDFETTGLSPGEGDRAIEIGAVRIESGKVTAR-FQELMNP-GRRVDSFIESFTGITNL 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D    S +  +F DF  E N   +AHNA FD  F++AEL+RI             L+
Sbjct: 66  MLADARPCSDVMRDFADFIGEDN--LVAHNASFDKRFLDAELERIALSY-TGQFSCSMLA 122

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             R    +  + L +L +   I       H AL DS + + +++ M+    +
Sbjct: 123 ARRIFQQAPDHKLGTLVEFMNIP-VEGVFHRALYDSEMTAKLWLAMLNDVRR 173


>gi|218231342|ref|YP_002368423.1| DNA polymerase III subunit epsilon [Bacillus cereus B4264]
 gi|229146178|ref|ZP_04274553.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
 gi|296504117|ref|YP_003665817.1| DNA polymerase III subunit epsilon TlpA [Bacillus thuringiensis
           BMB171]
 gi|218159299|gb|ACK59291.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           B4264]
 gi|228637237|gb|EEK93692.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
 gi|296325169|gb|ADH08097.1| DNA polymerase III subunit epsilon tlpA [Bacillus thuringiensis
           BMB171]
          Length = 315

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166


>gi|229825431|ref|ZP_04451500.1| hypothetical protein GCWU000182_00790 [Abiotrophia defectiva ATCC
           49176]
 gi|229789994|gb|EEP26108.1| hypothetical protein GCWU000182_00790 [Abiotrophia defectiva ATCC
           49176]
          Length = 223

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTG+  + D++IEI A+++ +       F   + P  R     A +++GITDE +
Sbjct: 19  VFDLETTGVSPQTDKVIEISAIKVRNGQTVGE-FSSLVNP-MRGIPYGATRVNGITDEMV 76

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP F  +  +F DF  +     + HN                      +  IDTL IA
Sbjct: 77  ADKPVFEKVLGDFLDFVED--DILVGHNIHDFDMKFIHRDCEAFFRMFLGNDYIDTLPIA 134

Query: 131 RRKHPSSRNDLNS 143
           R+  P   +   +
Sbjct: 135 RKCLPQLGHHRLT 147


>gi|167470221|ref|ZP_02334925.1| DNA polymerase III, epsilon subunit [Yersinia pestis FV-1]
          Length = 143

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 8/132 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+I+ D ETTG++      +  RIIEIG V +++   T R F V++ P  R   PEA  +
Sbjct: 7   RQILLDTETTGMNKLGVHYEGHRIIEIGTVAVINLPLTGRNFHVYVKP-ARLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI+DEFL DKP+F+ I  EF DF        + HNA FD+GF + E + + +D      
Sbjct: 66  HGISDEFLADKPTFADITPEFLDFIRGGE--LVIHNAAFDIGFKDYEFRMLQQDIPKTET 123

Query: 123 IIDTLSIARRKH 134
           +           
Sbjct: 124 LCPISDNKEMPP 135


>gi|27367395|ref|NP_762922.1| DNA polymerase III subunit alpha [Vibrio vulnificus CMCP6]
 gi|27358964|gb|AAO07912.1| DNA polymerase III alpha subunit [Vibrio vulnificus CMCP6]
          Length = 204

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 9/177 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV+++D      +FQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPNLGDRAIEIGAVKIVDGEVV-DSFQQLMNP-GFRVSSFIESYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RIN D   + +  +   
Sbjct: 66  MLRSAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCDYSGEFACSLLVA 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
               +  PS +       K           H AL D+ + + +++ M+         
Sbjct: 124 RRLIQDAPSHKLGELVRYKNIDNDGI---FHRALADAQMTAKLWLLMVEELEHSGIA 177


>gi|118616866|ref|YP_905198.1| DNA polymerase [Mycobacterium ulcerans Agy99]
 gi|118568976|gb|ABL03727.1| DNA polymerase [Mycobacterium ulcerans Agy99]
          Length = 500

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 99/253 (39%), Gaps = 24/253 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTG  ++ DR++E+G V L         +   + P+       A + HGI   
Sbjct: 98  FAVLDFETTGFAAEYDRVVEVGLVLLSAEGDIEDEWSTLINPHR---DVGATERHGIRAR 154

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127
            +   P+F +I              ++AHN  FD  F+ AE  +            + T+
Sbjct: 155 DVLGAPAFEAIIPRLLRDLRG--RVFVAHNVNFDQRFLLAELRRAGVPLDNPWLTGLCTM 212

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV-GGSQINFGFK 186
             A R  P++   L   C   G+       H AL D+   + +   ++   GS   +  +
Sbjct: 213 RWAGRLLPAASRKLPDCCDAAGV--FLTDAHRALADARATASLLKYLIDHCGSPPPWAKE 270

Query: 187 TNEDRFFKEEKKTVPNISLLKR-------DKP-------LFTRITKEELDEHDKTIQTLG 232
            +    F+  +   P + L+ R        +P       +  R+  E+    +  ++ L 
Sbjct: 271 IDGAEDFEWPQVAGPEVRLVTRAAWGAAPPRPPAGWLDRIVARMPHEDDPRVESYLEIL- 329

Query: 233 KNAIWDRYISSNQ 245
           ++A+ D Y+S ++
Sbjct: 330 ESALLDCYLSCHE 342


>gi|194333813|ref|YP_002015673.1| DNA polymerase III subunit epsilon [Prosthecochloris aestuarii DSM
           271]
 gi|194311631|gb|ACF46026.1| DNA polymerase III, epsilon subunit [Prosthecochloris aestuarii DSM
           271]
          Length = 208

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 7/172 (4%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV + +    +R FQ  + P G + S       GIT+E
Sbjct: 11  VVLDFETTGLSPQYGDRAIEIGAVLVEEGRIVDR-FQKLMNP-GFRISSFIEAYTGITNE 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK +     + ++F +F    N    AHNA FD  F++ EL+R N+   +       L 
Sbjct: 69  MLKGEACCEEVMAQFSEFIAGHNIV--AHNASFDKRFLDFELKRANRSY-EGVCCCSLLV 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             R    S  + L +L    G+       H AL D+ + + +++ M+    +
Sbjct: 126 SRRIYQDSPNHKLQTLVSHAGVPTIGS-FHRALADAEMTAHLWLAMIDRIRK 176


>gi|229134413|ref|ZP_04263226.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196]
 gi|228649034|gb|EEL05056.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196]
          Length = 318

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +       + I     
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNNVIDTVFL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169


>gi|228928662|ref|ZP_04091698.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229123127|ref|ZP_04252334.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
 gi|228660421|gb|EEL16054.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
 gi|228830981|gb|EEM76582.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 315

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +    +  + L +L +  G      S H A  D    + VY K      +      T 
Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                   +     +   KRD    
Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207


>gi|225572667|ref|ZP_03781422.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039967|gb|EEG50213.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1464

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 73/199 (36%), Gaps = 6/199 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG    + +IIEIGAV + D     R F  F+ P          +L  I D 
Sbjct: 440 FVVFDLETTGFSPMSCQIIEIGAVRVEDGKIVER-FSTFVNPK-VPIPFRIEQLTSINDS 497

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDTL 127
            + D P    +  +F +F +   A  +AHNA FD+ F+     +            +   
Sbjct: 498 MVMDAPVIEEVLPKFLEFCSG--AVMVAHNADFDMSFVEFNCDRLGIPHDFTYIDTVGMA 555

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                     + D  +      +   HR+   A   + +    ++KM+      N     
Sbjct: 556 RFLLPSLNRFKLDTVAKALEIPLGHHHRAVDDAACTADIFVK-FVKMLADREIENVDVLN 614

Query: 188 NEDRFFKEEKKTVPNISLL 206
            +    +   K +P    +
Sbjct: 615 CQGSVSENTVKKLPTYHAI 633


>gi|196034235|ref|ZP_03101645.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
 gi|228947225|ref|ZP_04109519.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|195993309|gb|EDX57267.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
 gi|228812472|gb|EEM58799.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 315

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +    +  + L +L +  G      S H A  D    + VY K      +      T 
Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                   +     +   KRD    
Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207


>gi|163802995|ref|ZP_02196881.1| DNA polymerase III, alpha subunit [Vibrio sp. AND4]
 gi|159173169|gb|EDP57998.1| DNA polymerase III, alpha subunit [Vibrio sp. AND4]
          Length = 209

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 9/176 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV+++D      +FQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPNMGDRAIEIGAVKIVDGEVV-DSFQQLMNP-GFRVSSFIEGYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RIN     + +  +   
Sbjct: 66  MLRTAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINLGYSGEFACSLLVA 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
               +  PS +       K      +    H AL D+ + + +++ M+    Q+  
Sbjct: 124 RRLIQDAPSHKLGELVRYKNI---ENDGVFHRALADAQVTARLWLLMVEELEQLGI 176


>gi|28900648|ref|NP_800303.1| hypothetical protein VPA0793 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153836411|ref|ZP_01989078.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ3810]
 gi|28809028|dbj|BAC62136.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149750313|gb|EDM61058.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ3810]
          Length = 214

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 13/186 (6%)

Query: 4   KNKMRK----IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           +N M +    +V D ETTGL     DR IEIGAV+L+D      +FQ  + P G + S  
Sbjct: 8   ENVMPQANSVVVLDFETTGLSPTLGDRAIEIGAVKLVDGEVV-DSFQQLMNP-GFRVSSF 65

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                GIT+  L+  PS   + + F +F + +N   IAHNA FD  F++AEL+RIN    
Sbjct: 66  IENYTGITNNMLRTAPSCEEVMASFSEFIDGEN--LIAHNASFDKRFLDAELERINCGYS 123

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            + +  +       +  PS +       K      +    H AL D+ + + +++ M+ G
Sbjct: 124 GEFACSLLVARRLIQDAPSHKLGELVRYKNI---DNDGVFHRALADAQMTAKLWLLMVEG 180

Query: 178 GSQINF 183
                 
Sbjct: 181 LENSGI 186


>gi|218904738|ref|YP_002452572.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH820]
 gi|218538798|gb|ACK91196.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH820]
          Length = 315

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 76/205 (37%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +    +    L +L +  G      S H A  D    + VY K      +      T 
Sbjct: 126 AKKYMKHAPNYKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                   +     +   KRD    
Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207


>gi|30021712|ref|NP_833343.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 14579]
 gi|29897267|gb|AAP10544.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
          Length = 315

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    ++ + L +L +  GI +S  +     +    +  
Sbjct: 126 AKKYMKHATNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166


>gi|84514691|ref|ZP_01002055.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella
           vestfoldensis SKA53]
 gi|84511742|gb|EAQ08195.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella
           vestfoldensis SKA53]
          Length = 469

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTG     D +++IGA+ +++  +       + + P GR     +  +H ITD
Sbjct: 276 YVVFDTETTGFLPNKDEVVQIGALRVVNGQQAPGEVLDLLVNP-GRAIPASSTAVHRITD 334

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +KD P       +F      ++A  +AHNA FD+ F +    +I      P      L
Sbjct: 335 AMVKDAPDMVHAGRKFHS--FARDAVLVAHNAPFDLSFFHRYAPKIGMKFDHPVLDTVLL 392

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           S A     +  + L+ L KR GI +  + +H A+ D+    D++++M+        
Sbjct: 393 S-AVLFGITEGHTLDELAKRLGIELLDKHRHTAIGDAIATRDIFLRMIPMLEARGL 447


>gi|229157184|ref|ZP_04285264.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342]
 gi|228626248|gb|EEK82995.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342]
          Length = 315

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D  +   +   F  F +      +AHNA FD+ F+ + +  ++        I     
Sbjct: 68  RVSDARTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLSLPEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +    +  + L +L +  G      S H A  D    + VY K      +      T 
Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                   +     +   KRD    
Sbjct: 183 VLDETAVYEAVKKILVRNKRDIEWV 207


>gi|302668622|ref|YP_003833070.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
 gi|302397586|gb|ADL36488.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
          Length = 1490

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 7/162 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL    D+IIEIGAV++LD    ++ F  F+ P     SP   KL  ITD+ 
Sbjct: 460 VVFDIETTGLSPTEDKIIEIGAVKMLDGVVVDK-FSEFVDPK-IPISPATTKLTTITDDM 517

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P   ++  +F +F  +     + HN  FD+ FI    +R+             LS 
Sbjct: 518 VIGAPLIDAVVPKFVEFCGD--CVLVGHNVGFDISFIIENCRRLGIKKEFTCIDTMGLSR 575

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           A      +++ L ++CK   +   +   H A+ D+   ++++
Sbjct: 576 AFYPQ-QAKHSLEAVCKTLKVV--NEQHHRAISDAECTAEIF 614


>gi|126734517|ref|ZP_01750263.1| exonuclease, putative [Roseobacter sp. CCS2]
 gi|126715072|gb|EBA11937.1| exonuclease, putative [Roseobacter sp. CCS2]
          Length = 461

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 4/115 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGLD + D ++++GAV +++     + TF+  + P GR    ++ K+HGI+D
Sbjct: 273 FVVFDSETTGLDPQKDDVVQLGAVRIVNGRIIASETFEALVNP-GRPIPAQSTKVHGISD 331

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           + +   P F+ +   F       NA  +AHNA FD+ F+N          +D   
Sbjct: 332 DMVAGAPDFTVVRDNFQR--YAANAVLVAHNAPFDMAFLNRSDAIFQNPVMDTVH 384


>gi|90577496|ref|ZP_01233307.1| putative DNA polymerase III [Vibrio angustum S14]
 gi|90440582|gb|EAS65762.1| putative DNA polymerase III [Vibrio angustum S14]
          Length = 207

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 9/173 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   + DR IEIGAV+L++    ++ FQ  + P G + S       GI++ 
Sbjct: 11  VVLDFETTGLSPNQGDRAIEIGAVKLVNGEVVDQ-FQQLMNP-GFRVSSFIEGYTGISNN 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L+  P  + +   F DF  + N   +AHNA FD  F++AEL  I +      +  +   
Sbjct: 69  MLRTAPPCNEVMDAFADFIGDAN--LVAHNASFDQRFLDAELADIGRYYTGTFTCSMLIA 126

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
               +  P+ +       K       +   H AL DS + + +++ M+    +
Sbjct: 127 RRLYQHAPNHKLGTLVDFKHI---EHNGVFHRALADSEMTARLWLVMIEDIKR 176


>gi|297584076|ref|YP_003699856.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10]
 gi|297142533|gb|ADH99290.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10]
          Length = 1433

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 9/222 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + IIE+ AV++      +R F+ F  P+    SP  + L GITD+
Sbjct: 419 YVVFDVETTGLSAVYNTIIELAAVKVQGGEIIDR-FESFANPH-EPLSPTIIDLTGITDD 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P    +  +F  +    N   +AHNA FD+ F++A  Q+   D      I     
Sbjct: 477 MVADAPEIHDVLKDFKAWC--GNDILVAHNAAFDMAFLDAGYQKAGMDKAANPVIDTLEM 534

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF---GF 185
                       LN+LCK++ I     S H A+ D+     +  KM+    +        
Sbjct: 535 GRMLYPTFKNYRLNTLCKKFNIE--LVSHHRAIYDAEATGHLLWKMVRDAVEKGITTHSA 592

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
             ++      +K+   + ++  ++      + K     H   
Sbjct: 593 LNDQSSPDDYKKQRPNHCTIYAKNAEGLKNLYKLVSKAHIDY 634


>gi|223937241|ref|ZP_03629147.1| DNA-directed DNA polymerase [bacterium Ellin514]
 gi|223894026|gb|EEF60481.1| DNA-directed DNA polymerase [bacterium Ellin514]
          Length = 199

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 2/167 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            ++FD+ETTGL S  D II+I AV + +    ++ +F  ++ P GR  S       GIT+
Sbjct: 5   YVIFDLETTGLSSYQDEIIQIAAVRMSNGVVCSSDSFFSYVNP-GRSISSFITSYTGITN 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + D P   ++  +F  +  +        +            +               L
Sbjct: 64  QDVGDAPRVGTVLKDFSRYAGKATLIAHNGHRFDMKFLHAGCSRNALPTRAVNYHDSIYL 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           S          + L+S+  R  I+     +H A  D  LL++   KM
Sbjct: 124 SRLVWGKCPGGHGLDSVLNRLQISNHGVRRHDARGDVELLAEAVEKM 170


>gi|309805552|ref|ZP_07699597.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165203|gb|EFO67441.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
          Length = 758

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+   +      ++  +  
Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 458

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +              Q+     HN +FD+GF+NA L+R N D +    +     
Sbjct: 459 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 518

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++    +    F+  
Sbjct: 519 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 573

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                 +  K        K +      I K
Sbjct: 574 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 603


>gi|296269280|ref|YP_003651912.1| DNA polymerase III subunit epsilon [Thermobispora bispora DSM
           43833]
 gi|296092067|gb|ADG88019.1| DNA polymerase III, epsilon subunit [Thermobispora bispora DSM
           43833]
          Length = 574

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 63/174 (36%), Gaps = 4/174 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG     D I EIGAV++         F   + P GR   P    L GITD 
Sbjct: 20  FVVFDLETTGGSPAEDAITEIGAVKVCGGQVRGE-FATLIDP-GRPIPPFISVLTGITDA 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P    +   F +F     A  +AHNA FD+GF+ A        P     +     
Sbjct: 78  MVVAAPKLPQVLPAFLEFIRG--ATLVAHNAPFDLGFLRAACAEYGYPPPANPVVDTADL 135

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
             R        D            +    H AL D+    DV   ++     + 
Sbjct: 136 ARRMLTRDETPDCKLATLARYFRSATEPCHRALADARATVDVLHGLLERAGALG 189


>gi|229168326|ref|ZP_04296051.1| DNA polymerase III alpha subunit [Bacillus cereus AH621]
 gi|228615152|gb|EEK72252.1| DNA polymerase III alpha subunit [Bacillus cereus AH621]
          Length = 318

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +       + I     
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNNVIDTVFL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169


>gi|323485384|ref|ZP_08090732.1| DNA polymerase III PolC-type [Clostridium symbiosum WAL-14163]
 gi|323401247|gb|EGA93597.1| DNA polymerase III PolC-type [Clostridium symbiosum WAL-14163]
          Length = 263

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50
           +  D+ETTGLD K+D+IIEIGAV ++D  +   TF  F+ P
Sbjct: 26 YVAIDLETTGLDPKHDKIIEIGAVLVIDG-EIKETFSTFVNP 66


>gi|229179896|ref|ZP_04307242.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W]
 gi|228603577|gb|EEK61052.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W]
          Length = 315

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLLEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166


>gi|257125285|ref|YP_003163399.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257049224|gb|ACV38408.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b]
          Length = 1459

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 80/212 (37%), Gaps = 6/212 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI       +VFDIETTG D  ND+IIEIGAV++         F  F+ P       +  
Sbjct: 419 MIEDEI--YVVFDIETTGFDPFNDKIIEIGAVKMRGREVIGE-FSEFVNPE-IPIPQKIT 474

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L  ITDE + +     ++   F +F         AHNAKFDVGFI  +      +    
Sbjct: 475 ELTTITDEMVANAEKIETVLPRFLEFCTGTTVV--AHNAKFDVGFIKQKTIDQGLEYSPS 532

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                 L+             N +        +H         +  +   ++ M++    
Sbjct: 533 VIDTLPLARTLLPELRGYGLANLVKYFGITLETHHRAVDDAKATAEVFQKFLNMILSKGI 592

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
           +       + +   +  +T+  + L+K    L
Sbjct: 593 LKLIEINTDLQPNIQNSETLNTMILVKNQAGL 624


>gi|327441015|dbj|BAK17380.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046]
          Length = 1443

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 8/197 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTG  +  D IIE+ AV++ +      TF+ F  P+ RK + + ++L  ITD+
Sbjct: 429 YIVFDVETTGFSNVYDTIIELAAVKIKNGQVI-DTFERFSNPH-RKLTAKIIELTHITDD 486

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L + P  S +  EF DF  +     +AHNA FD+GF+    +    +   P        
Sbjct: 487 MLVNAPELSDVIREFHDFIGD--GVVVAHNAAFDLGFLYVAYKNAGIEVRHPGIDT---V 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GFKT 187
              R     +   N         I     H A+ D+    ++++ ++   + +       
Sbjct: 542 ELSRLVNPGQKSHNLKTLTKKYNIELTQHHRAIYDTEATGELFLHLLKQAADLGIKNLIE 601

Query: 188 NEDRFFKEEKKTVPNIS 204
             D    EE       S
Sbjct: 602 MNDHVGGEEGYKQSRPS 618


>gi|289424040|ref|ZP_06425828.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptostreptococcus anaerobius 653-L]
 gi|289155559|gb|EFD04236.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptostreptococcus anaerobius 653-L]
          Length = 1440

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 7/187 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL   +D + EIGAV++ +      +F  F+ P     S +  +L  IT+E
Sbjct: 426 FVVFDIETTGLSPHSDNLTEIGAVKVQNCEIV-DSFSTFVNPK-MDISYQIQELTRITNE 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD PS      EF +    +++  +AHNA FD GFI  + Q++  +         TL+
Sbjct: 484 MVKDAPSLEEALPEFLE--FAKDSVLVAHNADFDTGFIYQKCQQLGLEYNFEKVDTLTLA 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R  L+ +CK  G+       H A+ D+   ++V+IK +    +      ++
Sbjct: 542 -RIINTNLKRFSLDKVCKEMGVV--LAGHHRAVNDAQATAEVFIKYLEIFKKKGINKLSD 598

Query: 189 EDRFFKE 195
            +R + +
Sbjct: 599 VNRVYGK 605


>gi|183508608|ref|ZP_02958116.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
 gi|182676065|gb|EDT87970.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
          Length = 1442

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 4/205 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL    D IIE GAV + +  +     Q F+ P  ++ +     L  I+ E
Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAVIMQNNKQIGEKIQFFVKP-IQQINENVTNLTNISQE 467

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +     +   +  + F++     +AHN          +           +  IDTL 
Sbjct: 468 MVNNAIDEKTALLKIKEIFDD--HILVAHNGINFDINFINQRLLKWGLEPLKNPSIDTLM 525

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M       +FG    
Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEIAHRADYDAIVLTDVFKVMKNNLFN-DFGITNL 584

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
            +   K +   + N S         
Sbjct: 585 NEINTKLQTTMLRNRSFGNWINLYI 609


>gi|58337539|ref|YP_194124.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227904180|ref|ZP_04021985.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
 gi|58254856|gb|AAV43093.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227868199|gb|EEJ75620.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
          Length = 1437

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 420 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH---HPLSEQTINLTSIT 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R     +    +     
Sbjct: 476 DEMVSAADDEAIVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRNGFSEITQPVVDTLEV 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                   +R+ L+SL K+Y +++ H   H A  D+     +  K++   ++
Sbjct: 536 SRLLHPEQNRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMYKLLDAFNE 585


>gi|225849433|ref|YP_002729598.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644689|gb|ACN99739.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 205

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 7/200 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTGL+  N  IIEI A+ +      ++ F   + P+         KL GIT+ 
Sbjct: 11  FLIVDLETTGLNPVNSEIIEIAALRVEGGIVVDK-FHTLVKPSIGFIPTYITKLTGITNA 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + DKP+   +F +F      +N+  +AHNA+FD+ F+N+   +I    +    +     
Sbjct: 70  LVVDKPTIEEVFPQFLK--FSENSIIVAHNAQFDMSFLNSVSYQITGRSIQNPVLCTQNL 127

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             R         L +L   + I  + +  H AL D+ +  +++ K++       F     
Sbjct: 128 AKRLFPDLPSKSLVNLAYHFNIPYNKK--HRALEDALVTYELFKKIIDYL--YMFNINKV 183

Query: 189 EDRFFKEEKKTVPNISLLKR 208
            D       K +   S  +R
Sbjct: 184 MDLVRLSNGKDLNQTSKRRR 203


>gi|312135559|ref|YP_004002897.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis
           OL]
 gi|311775610|gb|ADQ05097.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis
           OL]
          Length = 1402

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 5/220 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG DS+ ++IIEIGAV++ +   T R F  F+ P G+       +L GI  +
Sbjct: 390 FVVVDVETTGFDSQKNKIIEIGAVKIENGQITER-FSTFVDPEGK-IPVRISELTGIYQD 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P       EF        +  +AHNA+FD+GF+    Q               LS
Sbjct: 448 MVDKAPKLRDAILEFEK--FASGSVLVAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELS 505

Query: 129 IARRKHPSSRNDLN-SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                  SS      +      +   HR+   A   + + + +  ++ V G +      +
Sbjct: 506 RRLLTGLSSHKLNKVAEFLNVELRHHHRADSDAETTAGIFTSLMERLKVRGYKWLKELNS 565

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
            E     + K    + ++L +++     + K     H + 
Sbjct: 566 IESNAKADLKSHSYHATILVKNQQGLKNLYKLVSYSHLEY 605


>gi|255505426|ref|ZP_05346027.3| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
 gi|255267960|gb|EET61165.1| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
          Length = 1010

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 5/171 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG+ SK D +IEI AV++     T   F   + P GRK  P A +++GITD+
Sbjct: 25  YVVFDLETTGISSKYDEVIEISAVKVEAGQVTGE-FSTLVNP-GRKIPPAASRVNGITDK 82

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     FS +  +F+ F  +        N+ FD+ F+  + ++  +   D   +   L 
Sbjct: 83  MVAGALPFSEVLGDFFAFAGDFVLVGHNINS-FDMKFLYRDAKKYFRKVPDNDYVDTLLL 141

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                   S + L  L + YGI+   +  H AL D H+   VY K+     
Sbjct: 142 ARAALPELSHHRLVDLAEHYGIS--AKGAHRALNDCHMNQKVYGKLAEEAE 190


>gi|170726548|ref|YP_001760574.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908]
 gi|169811895|gb|ACA86479.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908]
          Length = 205

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 69/172 (40%), Gaps = 7/172 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL   + DR IEIGAV+L D      TFQ  + P  R  S            
Sbjct: 10  IVLDFETTGLSPNQGDRAIEIGAVKLEDGVVV-DTFQALMNPGFRITSFIESYTGITNQM 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P    +            +  +AHNA FD  F++AEL  IN+          ++ 
Sbjct: 69  LSTAAPCEVVMDRFAD---FIHGSNLVAHNASFDQRFLDAELSLINRH--YTGEFACSML 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           IARR +  + N        +    +    H AL DS + + +++ M+     
Sbjct: 124 IARRIYQEAPNHKLGGLVAFRQIENDGVFHRALADSEMTAKLWLTMIEDIQT 175


>gi|293115337|ref|ZP_05790986.2| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810483|gb|EFF69688.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
          Length = 1476

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 9/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL   ND IIEIGAV++ +    +R F  F+ P          +L GI D 
Sbjct: 451 YVVFDLETTGLSPVNDSIIEIGAVKIQNKKVVDR-FSTFVNPK-IPIPYNIEQLTGIDDS 508

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D  +  +I  EF  F +   A  +AHNA+FDV FI  + + I     + + +     
Sbjct: 509 MVVDADTIENILPEFLKFCDG--AVMVAHNAEFDVTFIREKTKTILGKAFECTVVDTVSL 566

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L+ + K   ++      H A+ D+   +D+++ ++      N     N
Sbjct: 567 ARALIPNLGKFTLDHVAKALNVS--LLHHHRAVDDAECCADIFLALVARLEMRNI---FN 621

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
            D   + E+  +  I   K    +    ++
Sbjct: 622 LDEINEIEEFNINAIKKAKTYHAIILADSE 651


>gi|163941216|ref|YP_001646100.1| DNA polymerase III subunit epsilon [Bacillus weihenstephanensis
           KBAB4]
 gi|163863413|gb|ABY44472.1| DNA polymerase III, epsilon subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 315

 Score = 75.7 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +       + I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--KVIVAHNASFDMRFLKSNVNMLGLPEPKNNVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166


>gi|313885310|ref|ZP_07819061.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619416|gb|EFR30854.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 1435

 Score = 75.7 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 7/207 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL S  D+IIE+ AV++ +      TF+ F+ PN +  S    +L GIT+ 
Sbjct: 420 YVVFDVETTGLSSVYDKIIELAAVKMKEGQVI-DTFEAFINPN-QPLSSFTTELTGITNA 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P    +  +F+D    QN   +AHNA FD+GF+N   +RI  +      I     
Sbjct: 478 MVEDAPQEDVVLKDFYD--FSQNTILVAHNASFDIGFLNKGYERIGIENTPLPVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L KRYG+       H A+ DS     +  K++   +  +FG + +
Sbjct: 536 SRMVNPHLKSHRLNTLAKRYGVN--LEQHHRAVYDSETTGYLMYKLL-DQALADFGMEYH 592

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTR 215
                +  +      +       L   
Sbjct: 593 HQLNNQLGQGDAFKQARPMHATLLVKE 619


>gi|194246813|ref|YP_002004452.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
 gi|193807170|emb|CAP18609.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
          Length = 1449

 Score = 75.7 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 5/177 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD ETTGL   ND+IIEI A+++ +    +  FQ  + P  ++ +P    L  I+++
Sbjct: 409 YVIFDFETTGLSKINDQIIEIAAIKIQNNQIIDE-FQTLINPQ-QELTPFIENLTNISNQ 466

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK++P  ++I  +F  F   +N+  IAHN  FD+GF+  + ++     L     IDTL+
Sbjct: 467 DLKNQPLIATILPKFLKFC--ENSILIAHNISFDMGFLVNQTKKHLNLKL-NLPFIDTLN 523

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +AR    S+    N         IS  + H A+ D  +   ++ +++      N  F
Sbjct: 524 LARYCLDSNLRYFNLKSLAKYFKISFENHHRAMSDVLITKTIFQQLLNYLLTKNIQF 580


>gi|309804220|ref|ZP_07698297.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
 gi|308163623|gb|EFO65893.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
          Length = 762

 Score = 75.7 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+   +      ++  +  
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 462

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + +              Q+     HN +FD+GF+NA L+R N D +    +     
Sbjct: 463 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 522

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++    +    F+  
Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 577

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                 +  K        K +      I K
Sbjct: 578 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 607


>gi|260365523|ref|ZP_05778060.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus K5030]
 gi|260877586|ref|ZP_05889941.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AN-5034]
 gi|260895401|ref|ZP_05903897.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|260901674|ref|ZP_05910069.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ4037]
 gi|308085274|gb|EFO34969.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308090931|gb|EFO40626.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AN-5034]
 gi|308108950|gb|EFO46490.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ4037]
 gi|308114429|gb|EFO51969.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus K5030]
          Length = 204

 Score = 75.7 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 9/176 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV+L+D      +FQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPTLGDRAIEIGAVKLVDGEVV-DSFQQLMNP-GFRVSSFIENYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L+  PS   + + F +F + +N   IAHNA FD  F++AEL+RIN     + +  +   
Sbjct: 66  MLRTAPSCEEVMASFSEFIDGEN--LIAHNASFDKRFLDAELERINCGYSGEFACSLLVA 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
               +  PS +       K      +    H AL D+ + + +++ M+ G      
Sbjct: 124 RRLIQDAPSHKLGELVRYKNI---DNDGVFHRALADAQMTAKLWLLMVEGLENSGI 176


>gi|322382351|ref|ZP_08056258.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153704|gb|EFX46079.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 1437

 Score = 75.4 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL   N++IIEI  V++ D  +  R +  F+ P+  K      +L  ITDE
Sbjct: 423 YVVFDIETTGLSVINNKIIEIAGVKMKDGKEIGR-YTTFIDPH-EKIPYNIQQLTNITDE 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P  +    +F +F  +  A  +AHNA+FD+GFI A L+ I    L    +     
Sbjct: 481 MVQGAPDIAEELPKFVEFVGD--AVLVAHNARFDMGFIQANLKNIGMPELPNPSLDTLEL 538

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L  ++ ++    + H A+ D+  L  +   ++    + N      
Sbjct: 539 ARLLFPSLKNHRLNTLADKFKVS--LENHHRAIDDTVALMHILNHLLQEAEEQNLTQLNR 596

Query: 189 EDRFFKEEKKTVPNIS 204
            +    ++ +      
Sbjct: 597 LNDHVGKDLRNTRPFH 612


>gi|154487101|ref|ZP_02028508.1| hypothetical protein BIFADO_00941 [Bifidobacterium adolescentis
           L2-32]
 gi|154084964|gb|EDN84009.1| hypothetical protein BIFADO_00941 [Bifidobacterium adolescentis
           L2-32]
          Length = 256

 Score = 75.4 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 5/163 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ETTG    +DRI+EIGA+ + +     R +   + P  R    E  +L+G+TD  L+
Sbjct: 89  IDLETTGFSPSDDRIVEIGAIRVRNGRPVKR-YSQLINPQ-RPLPEEITRLNGLTDADLR 146

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           ++P+   +  +F  F           N  FD  F+ A   R+    +    I        
Sbjct: 147 NQPTVDQVLPDFIRFIGNDTLIGHNINE-FDAAFLLANTTRLGMRHIGNKTIDTLPLDRA 205

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                 ++ L  + +R+GI       H A  D+   +  Y  M
Sbjct: 206 LYPEEPKHRLVDIIRRFGIA--QTESHRAADDALQTAQCYETM 246


>gi|295706248|ref|YP_003599323.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319]
 gi|294803907|gb|ADF40973.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319]
          Length = 1436

 Score = 75.4 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 6/197 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++ +    +R F+ F  P+    S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKMKEGEIIDR-FERFANPH-HPLSATTIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P  S +  +F ++  +  +  +AHNA FD+GF+N  LQ+I  +      I     
Sbjct: 479 MVQNAPEISEVLRDFHEWMGD--SILVAHNASFDMGFLNMGLQKIGLEKAANGVIDTLEL 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L K++   I     H A+ D+     +  KM+    +        
Sbjct: 537 GRFLYPHMKNHRLNTLAKKF--DIELVQHHRAIYDAETTGYLLNKMLKDAFEREITMHDR 594

Query: 189 EDRFFKEEKKTVPNISL 205
            + +  E          
Sbjct: 595 LNDYMGEGNAYQRARPY 611


>gi|294500902|ref|YP_003564602.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551]
 gi|294350839|gb|ADE71168.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551]
          Length = 1436

 Score = 75.4 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 6/197 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++ +    +R F+ F  P+    S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKMKEGEIIDR-FERFANPH-HPLSATTIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P  S +  +F ++  +  +  +AHNA FD+GF+N  LQ+I  +      I     
Sbjct: 479 MVQNAPEISEVLRDFHEWMGD--SILVAHNASFDMGFLNMGLQKIGLEKAANGVIDTLEL 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L K++   I     H A+ D+     +  KM+    +        
Sbjct: 537 GRFLYPHMKNHRLNTLAKKF--DIELVQHHRAIYDAETTGYLLNKMLKDAFEREITMHDR 594

Query: 189 EDRFFKEEKKTVPNISL 205
            + +  E          
Sbjct: 595 LNDYMGEGNAYQRARPY 611


>gi|257458230|ref|ZP_05623380.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580]
 gi|257444340|gb|EEV19433.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580]
          Length = 216

 Score = 75.4 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 65/201 (32%), Positives = 94/201 (46%), Gaps = 6/201 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FD ETTGLD    RI+EIGAV+  D       + V + P       EA K++GITDE
Sbjct: 16  FIAFDTETTGLDPAAGRIVEIGAVKF-DRRGIAARYNVLINPE-IPMPEEAGKVNGITDE 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKDKP  +++F +F+DF        +AHNA FD+ +INAEL+RI K PL    +   + 
Sbjct: 74  MLKDKPLIAAVFPDFFDFIGT--GVLVAHNAPFDINYINAELKRIGKSPLGNKVVDTRIF 131

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   S   L  L  ++GIT      H A  D+ +  +++ K++    + N      
Sbjct: 132 AKEVFPGLSSYALQDLAVQFGIT--ALEAHRAEDDARVCMELFDKILNRFLKNNPELVEK 189

Query: 189 EDRFFKEEKKTVPNISLLKRD 209
                       P     ++D
Sbjct: 190 IRAETDAASLLAPEEEQKEKD 210


>gi|227872422|ref|ZP_03990766.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
 gi|227841719|gb|EEJ52005.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
          Length = 821

 Score = 75.4 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 7/197 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG D + + IIEIGAV++ +    +R   VF+ P G        +L  I D  
Sbjct: 519 VVFDLETTGFDPRVNHIIEIGAVKIENGKIIDRM-DVFVNP-GVPIPFRITQLTSIDDSM 576

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D      +  +F D    ++A  +AHNA FD  F++ + + +N     P      LS 
Sbjct: 577 VMDAKGIEEVLPQFLD--FAKDAILVAHNADFDYHFVSTKAKALNIPFSAPVIDTVALSR 634

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
                 +         +   + I     H A+ D+   + +Y+K +    Q         
Sbjct: 635 LLLPRLNRFKLDTVAKE---LKIELLHHHRAVDDAEATARIYLKELEILEQRGVSSLEEI 691

Query: 190 DRFFKEEKKTVPNISLL 206
           D    ++   V  +   
Sbjct: 692 DSLEVDQVGKVRKLPSY 708


>gi|91225444|ref|ZP_01260566.1| hypothetical protein V12G01_08955 [Vibrio alginolyticus 12G01]
 gi|91189807|gb|EAS76080.1| hypothetical protein V12G01_08955 [Vibrio alginolyticus 12G01]
          Length = 204

 Score = 75.4 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 9/177 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV+L++      +FQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPTLGDRAIEIGAVKLVNGEVV-DSFQQLMNP-GFRVSSFIENYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RIN     + +  +   
Sbjct: 66  MLRSAPSCEEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCGYSGEFACSLLVA 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
               ++ PS +       K      +    H AL D+ + + +++ M+ G       
Sbjct: 124 RRLIQEAPSHKLGELVRYKNI---DNDGVFHRALADAQMTAKLWLLMVEGIENSGVE 177


>gi|229102245|ref|ZP_04232954.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-28]
 gi|228681146|gb|EEL35314.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-28]
          Length = 934

 Score = 75.4 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+      +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPVFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|56419793|ref|YP_147111.1| DNA polymerase III PolC [Geobacillus kaustophilus HTA426]
 gi|56379635|dbj|BAD75543.1| DNA-directed DNA polymerase III alpha chain [Geobacillus
           kaustophilus HTA426]
          Length = 1444

 Score = 75.4 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 6/190 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + IIE+ AV++ D    +R F  F  P G   S   ++L GITDE
Sbjct: 429 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANP-GHPLSVTTMELTGITDE 486

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    + + F D     +A  +AHNA FD+GF+N  L R+ +  +    I     
Sbjct: 487 MVKDAPKPDEVLARFVD--WAGDATLVAHNASFDIGFLNTGLARMGRGKIANPVIDTLEL 544

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK++   I     H A+ D+     + ++++    +    F   
Sbjct: 545 ARFLYPDLKNHRLNTLCKKF--DIELTQHHRAIYDAEATGHLLMRLLKEAEERGILFHDE 602

Query: 189 EDRFFKEEKK 198
            +     E  
Sbjct: 603 LNSRTHSEAS 612


>gi|282600891|ref|ZP_06257782.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM
           15176]
 gi|282571272|gb|EFB76807.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM
           15176]
          Length = 1347

 Score = 75.4 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 5/198 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGLDS  + + EIGAV + +      + F  F+ P G+    + ++L GI D
Sbjct: 321 FVVFDTETTGLDSNVEALTEIGAVYVENGKINEEKKFCTFVNP-GKPIPQKVVELTGIND 379

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P+       F +F  +     +AHNA         +         D +  IDTL
Sbjct: 380 AMVADAPTPEEAIRAFKEFCGD--HVLVAHNAHSFDMLFIRKAGEKAGISFDENTYIDTL 437

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            + +   P  RN       ++ + I   + H A+ D+  L+ ++  M+    + +     
Sbjct: 438 PMGQALFPGLRNYKLDTINKH-LEIPPFNHHRAVDDAMALARIFEVMLNDLQEKDIPTVE 496

Query: 188 NEDRFFKEEKKTVPNISL 205
             +      K+ +     
Sbjct: 497 AINTGLGGNKEVLKKKYY 514


>gi|89901349|ref|YP_523820.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
 gi|89346086|gb|ABD70289.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
          Length = 476

 Score = 75.4 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG +  +DRI EI AV + +  +  R +   + P G   SP    L GI++ 
Sbjct: 5   YVLLDLETTGGNPVHDRITEIAAVRIENGQEVAR-WSTLVNP-GCSISPFIQHLTGISNA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            ++  P F ++        +   A  +AHN +FD GF
Sbjct: 63  MVRGAPGFETVAQHLLALLDG--AVLVAHNVRFDHGF 97


>gi|150390440|ref|YP_001320489.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens
           QYMF]
 gi|149950302|gb|ABR48830.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens
           QYMF]
          Length = 1432

 Score = 75.4 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 7/172 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTGL ++NDRI EIGAV++ D    ++ F   + P  +    + ++L GITD+
Sbjct: 420 YIVFDIETTGLSNRNDRITEIGAVKIKDSQVIDK-FSALVNPEMK-IPSKIVELTGITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + DK +   I   F  F     +  +AHN+ FD+GFI     RI +   +       LS
Sbjct: 478 MVVDKQTIDVILPGFLAFIGS--SPVVAHNSDFDMGFIRENANRIERTIENQVIDTLKLS 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                        +   +   + +S  + H A+ D+   +++++K +    Q
Sbjct: 536 RILLPQLKRHRLNSIAKE---LNVSLENHHRAVDDAQATAEIFVKFIELLKQ 584


>gi|229096133|ref|ZP_04227106.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-29]
 gi|229115089|ref|ZP_04244499.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-3]
 gi|228668229|gb|EEL23661.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-3]
 gi|228687093|gb|EEL40998.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-29]
          Length = 934

 Score = 75.4 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+      +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPVFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175


>gi|257869632|ref|ZP_05649285.1| DNA polymerase III [Enterococcus gallinarum EG2]
 gi|257803796|gb|EEV32618.1| DNA polymerase III [Enterococcus gallinarum EG2]
          Length = 920

 Score = 75.4 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 6/169 (3%)

Query: 7   MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+ I  V D+ETTG D   DRII+ G V + D    NR F   + P+ R+ S +   L  
Sbjct: 1   MKPIYAVVDLETTGTDPAIDRIIQFGCVLIQDGQVINR-FATDINPD-RRISKQIQNLTH 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT++ +K  P F  +    ++        ++AHN  FD  F++ EL R     L+   I 
Sbjct: 59  ITNQQVKRAPYFEDVAHTIYNLL--TQTVFVAHNIYFDYHFLSQELIRCGMPSLEIPGID 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                       S   L  L +  G    +  +  +  +      +YI+
Sbjct: 117 TVELAQVFLPTESSFRLGDLAESIGFVHENPHQADSDAEVTAALLLYIE 165


>gi|90408002|ref|ZP_01216174.1| putative DNA polymerase III [Psychromonas sp. CNPT3]
 gi|90310846|gb|EAS38959.1| putative DNA polymerase III [Psychromonas sp. CNPT3]
          Length = 210

 Score = 75.4 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 7/173 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   + DR IEIGAV +++   T++ FQ  + P  R NS       GIT+ 
Sbjct: 10  VVLDFETTGLSPNQGDRAIEIGAVRIVNGEVTDQ-FQALMNPGIRVNS-FIEDYTGITNH 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK+  S S + ++F DF  + N   +AHNA FD  F++ EL  I++           L 
Sbjct: 68  MLKEAASCSDVMAQFCDFIGDDN--LLAHNASFDKKFLDNELDEISRTY-QGEFTCSLLV 124

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
             R    S  + L +L K+  ++      H AL D+ + + +++ M+   SQ 
Sbjct: 125 SRRINIDSQSHSLGNLVKQLNLS-EEGGFHRALFDAQMTAKLWLHMLDNISQT 176


>gi|261419458|ref|YP_003253140.1| DNA polymerase III subunit chi [Geobacillus sp. Y412MC61]
 gi|319766273|ref|YP_004131774.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52]
 gi|261375915|gb|ACX78658.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61]
 gi|317111139|gb|ADU93631.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52]
          Length = 1444

 Score = 75.4 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 6/190 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + IIE+ AV++ D    +R F  F  P G   S   ++L GITDE
Sbjct: 429 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANP-GHPLSVTTMELTGITDE 486

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    + + F D     +A  +AHNA FD+GF+NA L R+ +  +    I     
Sbjct: 487 MVKDAPKPDEVLARFVD--WAGDATLVAHNASFDIGFLNAGLARMGRGKIANPVIDTLEL 544

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK++   I     H A+ D+     + ++++    +    F   
Sbjct: 545 ARFLYPDLKNHRLNTLCKKF--DIELTQHHRAIYDAEATGHLLMRLLKEAEERGILFHDE 602

Query: 189 EDRFFKEEKK 198
            +     E  
Sbjct: 603 LNSRTHSEAS 612


>gi|329847967|ref|ZP_08262995.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Asticcacaulis biprosthecum C19]
 gi|328843030|gb|EGF92599.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Asticcacaulis biprosthecum C19]
          Length = 708

 Score = 75.4 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 2/125 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG  + NDR+ EI AV++         +   + P  R+      +L GIT+E
Sbjct: 543 YVVVDVETTGGRAVNDRVTEIAAVKVRGGKIIAE-WSSLINPE-RRIPGYITQLTGITNE 600

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F+ I  +   F +         N                              
Sbjct: 601 MVAGAPKFAEIADDLAAFLSGAVFVAHNVNFDHSFIASEYRRLERRFHAPKLCTCAGMRK 660

Query: 129 IARRK 133
                
Sbjct: 661 YYPGH 665


>gi|196248636|ref|ZP_03147336.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           G11MC16]
 gi|196211512|gb|EDY06271.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           G11MC16]
          Length = 911

 Score = 75.4 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 7/178 (3%)

Query: 7   MRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR ++ D+ETTG +  K DRII++G   + D S   R F  F  P  +       +L  I
Sbjct: 3   MRFVIIDLETTGNVPKKGDRIIQLGMAVVEDGSIVKR-FASFFNPE-QPIPLFIQQLTNI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            ++ ++  P F+    E             AHN  FD+ F+ AEL+R    P     I  
Sbjct: 61  DEQTVEGAPLFADKADEITAMMEGAYFV--AHNVDFDLPFLQAELERAGWPPFTGPTIDT 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K+ G+       H A  D+ + + ++I ++    ++  
Sbjct: 119 VELARIVLPTAESYKLGDLAKQLGLHHDRP--HQADSDAEVTAKLFIALLERLGRLPL 174


>gi|138895754|ref|YP_001126207.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus thermodenitrificans NG80-2]
 gi|134267267|gb|ABO67462.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2]
          Length = 911

 Score = 75.4 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 7/178 (3%)

Query: 7   MRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR ++ D+ETTG +  K DRII++G   + D S   R F  F  P  +       +L  I
Sbjct: 3   MRFVIIDLETTGNVPKKGDRIIQLGMAVVEDGSIVKR-FASFFNPE-QPIPLFIQQLTNI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            ++ ++  P F+    E             AHN  FD+ F+ AEL+R    P     I  
Sbjct: 61  DEQTVEGAPLFADKADEITAMMEGAYFV--AHNVDFDLPFLQAELERAGWPPFTGPTIDT 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K+ G+       H A  D+ + + ++I ++    ++  
Sbjct: 119 VELARIVLPTAESYKLGDLAKQLGLHHDRP--HQADSDAEVTAKLFIALLERLGRLPL 174


>gi|13357937|ref|NP_078211.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762156|ref|YP_001752460.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|13959349|sp|Q9PQB4|DPO3_UREPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|11279168|pir||C82898 DNA polymerase III alpha chain 1 UU377 [imported] - Ureaplasma
           urealyticum
 gi|6899360|gb|AAF30786.1|AE002135_2 DNA polymerase III alpha chain 1 [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827733|gb|ACA32995.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
          Length = 1442

 Score = 75.4 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 4/205 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL    D IIE GAV + +  +     Q F+ P  ++ +     L  I+ E
Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAVIMQNNKQIGEKIQFFIKP-IQQINENVTNLTNISQE 467

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +     +   +  + F++     +AHN          +           +  IDTL 
Sbjct: 468 MVNNAIDEKTALLKIKEIFDD--HILVAHNGINFDINFINQRLLKWGLEPLKNPSIDTLM 525

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I+R  +P   + L ++CK+Y +  +  S H A  D+ +L+DV+  M       +FG    
Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDESAHRADYDAIVLADVFKVMKNNLFN-DFGITNL 584

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
            +   K +   + N S         
Sbjct: 585 SEINTKLQTTMLKNRSFGNWINLYI 609


>gi|134098272|ref|YP_001103933.1| hypothetical protein SACE_1689 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910895|emb|CAM01008.1| DNA polymerase III, epsilon subunit [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 572

 Score = 75.4 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 4/174 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG  +  D + EIGAV++         FQ  + P  R   P  + + GIT+ 
Sbjct: 25  FVVVDLETTGGSNAQDAVTEIGAVKVRGGEVVGE-FQTLVDPE-RDIPPSVVTITGITEA 82

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P   S+   F +F     +  +AHNA FD GF+ A  +R+      P  +     
Sbjct: 83  MVRDAPRLDSVLPAFLEFCRG--SVLVAHNAPFDTGFLRAGCERLGLRWPKPKVVCTVRL 140

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
             R        +         +       H AL D+    DV   ++     I 
Sbjct: 141 ARRVLTRDETPNYRLGTLAGVLGARTEPVHRALDDARATVDVLHALLERLGPIG 194


>gi|30263558|ref|NP_845935.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Ames]
 gi|47528957|ref|YP_020306.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186408|ref|YP_029660.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Sterne]
 gi|65320888|ref|ZP_00393847.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bacillus anthracis str. A2012]
 gi|165871011|ref|ZP_02215662.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0488]
 gi|167636474|ref|ZP_02394772.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0442]
 gi|167640607|ref|ZP_02398869.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0193]
 gi|170688408|ref|ZP_02879616.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0465]
 gi|170708125|ref|ZP_02898572.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0389]
 gi|177652488|ref|ZP_02934955.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0174]
 gi|190565123|ref|ZP_03018044.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|229603113|ref|YP_002867802.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0248]
 gi|254686178|ref|ZP_05150037.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
           CNEVA-9066]
 gi|254726056|ref|ZP_05187838.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. A1055]
 gi|254738651|ref|ZP_05196354.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744791|ref|ZP_05202469.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Kruger
           B]
 gi|254752968|ref|ZP_05205004.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Vollum]
 gi|254759240|ref|ZP_05211266.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
           Australia 94]
 gi|30258193|gb|AAP27421.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. Ames]
 gi|47504105|gb|AAT32781.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49180335|gb|AAT55711.1| DNA polymerase III, epsilon subunit, putative [Bacillus anthracis
           str. Sterne]
 gi|164713222|gb|EDR18748.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0488]
 gi|167511475|gb|EDR86859.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0193]
 gi|167528133|gb|EDR90925.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0442]
 gi|170126933|gb|EDS95813.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0389]
 gi|170667578|gb|EDT18333.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0465]
 gi|172082162|gb|EDT67229.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0174]
 gi|190564440|gb|EDV18404.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|229267521|gb|ACQ49158.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0248]
          Length = 315

 Score = 75.4 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R      + L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRIMSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +    +  + L +L +  G      S H A  D    + VY K      +      T 
Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                   +     +   KRD    
Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207


>gi|227813558|ref|YP_002813567.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. CDC 684]
 gi|227004983|gb|ACP14726.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. CDC 684]
          Length = 315

 Score = 75.4 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R      + L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRIMSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +         I     
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +    +  + L +L +  G      S H A  D    + VY K      +      T 
Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                   +     +   KRD    
Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207


>gi|328948895|ref|YP_004366232.1| DNA polymerase III subunit epsilon [Treponema succinifaciens DSM
           2489]
 gi|328449219|gb|AEB14935.1| DNA polymerase III, epsilon subunit [Treponema succinifaciens DSM
           2489]
          Length = 216

 Score = 75.0 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 7/184 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD ETTGL ++ + IIEIGAV+          F + + P   +       L  ITD+
Sbjct: 22  FVAFDTETTGLKAEKEFIIEIGAVKFNCDGIIGEPFDILIKPP-IELPQFIKDLTHITDK 80

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P       +F +F   +    +AHNA+FD+GFIN+EL+R +   L    I    +
Sbjct: 81  MISCCPCAKEAVPQFLNFVGGKETVLVAHNAQFDLGFINSELKRFSHPELPNVCIDTLNA 140

Query: 129 IARRKHPSSRNDLNSLCKRY----GITISHRSKHGALLDSHLLSDVYIKMMV--GGSQIN 182
                    +       K         I  ++ H A  D+ L  +++ +++      Q N
Sbjct: 141 SRWAYPDFIKEQEKGQYKLQSLAKRFGIEAKAAHRANDDARLCMEIFKRIISDTMDKQKN 200

Query: 183 FGFK 186
           F   
Sbjct: 201 FSID 204


>gi|120598713|ref|YP_963287.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1]
 gi|120558806|gb|ABM24733.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1]
          Length = 212

 Score = 75.0 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 7/172 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL   +  R IEIGAV + +   T R F   + P  R +S            
Sbjct: 14  VVLDFETSGLSPNQGARAIEIGAVLIENGVITQR-FSELMGPGFRISSFIEDYTGISNQM 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P    + + F DF  + +   +AHNA FD  F++AE   I+ +     +   +L 
Sbjct: 73  LRNAAPC-HEVMARFADFIGDNH--LVAHNAAFDQRFLDAEFAHIHHE--YQGQFACSLL 127

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +ARR +P + N   +   RY    ++ + H AL D+ +   +++ M+    +
Sbjct: 128 LARRLYPLASNHQLATLVRYKQLPNNGTFHRALADAEMTGHLWLAMLADLQR 179


>gi|237732820|ref|ZP_04563301.1| DNA polymerase III subunit epsilon [Mollicutes bacterium D7]
 gi|229384061|gb|EEO34152.1| DNA polymerase III subunit epsilon [Coprobacillus sp. D7]
          Length = 224

 Score = 75.0 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 59/186 (31%), Gaps = 12/186 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD- 67
            +VFD+ETTG + K DRIIEIGA+++ +    +R F     P                  
Sbjct: 41  YVVFDLETTGFNKKEDRIIEIGAIKVKNGRVVDR-FSTLCAPIKGGKPMYISAKITEVTG 99

Query: 68  -------EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                    + +  +  +      +         +  +  F                +  
Sbjct: 100 IKNVDLLNQIPESEAVKNFMCWLGESKISVAHNGLKFDIPFLKEACKRSNVEFKFTHILD 159

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           + ++              N   +L + +G+       H A+ D   L  ++ K+      
Sbjct: 160 TMLLSKALNYVNNGNIPNNKQETLARYFGVDY---QAHRAVNDCEALLKIFDKLKNDAKN 216

Query: 181 INFGFK 186
           INF  K
Sbjct: 217 INFSLK 222


>gi|260426760|ref|ZP_05780739.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
 gi|260421252|gb|EEX14503.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
          Length = 468

 Score = 75.0 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 5/166 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           VFD ETTGL    D +++IGAV +L+          + + P G      + ++H +TD  
Sbjct: 278 VFDTETTGLLPHKDEVVQIGAVRVLNGRIVPGEVLDLLVDP-GIPIPASSSRVHKVTDAM 336

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  KP        F      + +  +AHNA FD+ F+     R+  +   P      LS 
Sbjct: 337 VAGKPDIGEAGRRFHR--FAKGSVIVAHNAPFDMAFLRRHRDRMGVEWDHPILDTVLLS- 393

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A     S  + L++LC+R G+ I    +H AL D++  + V + M+
Sbjct: 394 AVLFGASETHTLDALCQRLGVEIPQALRHTALGDANATAQVLVMML 439


>gi|114319829|ref|YP_741512.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226223|gb|ABI56022.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 719

 Score = 75.0 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 7/175 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD ETTGL   + D II IGAV L++     +  F+  + P  R     A + HGI++
Sbjct: 525 VVFDTETTGLSPARGDEIIAIGAVRLVNGRVLQDEYFEQLVKP-CRAIPDSATRFHGISN 583

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +   P    +   F  F  E  +  +AHNA FD+GF+     R       P      L
Sbjct: 584 EDVARAPEIGPVLRAFSRFIGE-ESVLVAHNAAFDMGFLRRAQARAGLAFPQPVLDTLLL 642

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           S+    H           +   + +  + +H AL D+ + +DV+ +M+    +  
Sbjct: 643 SVYLHDHSPDHTLEGVAER---LGVEVQKRHSALADARVTADVFARMIPLLRERG 694


>gi|24373798|ref|NP_717841.1| DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1]
 gi|24348190|gb|AAN55285.1|AE015666_9 DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1]
          Length = 212

 Score = 75.0 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 7/172 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL   +  R IEIGAV +     T R F   + P  R N+            
Sbjct: 14  VVLDFETSGLSPNQGARAIEIGAVLIEQGQITTR-FSELMNPGFRINAFIEDYTGISNQM 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P  + + + F +F  + +   +AHNA FD  F++AE   I             L 
Sbjct: 73  LAHAAPC-AEVMARFAEFIGKHH--LVAHNAAFDQRFLDAEFAHIGHQYSGQFGCSLLL- 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ARR +P + N   +   R+    ++ + H AL D+ +   ++++M+    Q
Sbjct: 129 -ARRLYPEAINHQLATLVRHKQLPNNGTFHRALADAEMTGHLWLRMLADLKQ 179


>gi|256750786|ref|ZP_05491671.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750369|gb|EEU63388.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 1407

 Score = 75.0 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 7/196 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTGL + ND IIEIGAV++ +      TF+ F+ P     S    KL GI +  +
Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKEGKII-DTFETFVNPK-IPISSFITKLTGIDESMV 453

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD PS   I  +F +     N+  +AHNA FDV FI ++ ++ N +  +       LS  
Sbjct: 454 KDAPSIEEILPKFLE--FASNSVLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRH 511

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
             K   +            + +     H A+ D+   ++++IK +    ++      + +
Sbjct: 512 LYKDLKNYKLDT---LAEHLQVKLEHHHRAVDDAMATAEIFIKTIDRLKELGVEKVKDIN 568

Query: 191 RFFKEEKKTVPNISLL 206
              KE +  +  + + 
Sbjct: 569 AILKESEVDIRKLPVY 584


>gi|315038577|ref|YP_004032145.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
 gi|312276710|gb|ADQ59350.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
          Length = 1435

 Score = 75.0 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 418 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH---HPLSEQTINLTSIT 473

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R     +    +     
Sbjct: 474 DEMVSAADDEDVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLSEITQPVVDTLEV 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y +++ H   H A  D+     +  K++    +       N
Sbjct: 534 SRLLHPEQNRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMYKLLDAFKKKYNEDNLN 591

Query: 189 EDRFFKEEKKTVPNISLL 206
               +    +        
Sbjct: 592 NLNGYAAHGEVYKRARPS 609


>gi|163939458|ref|YP_001644342.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus weihenstephanensis KBAB4]
 gi|163861655|gb|ABY42714.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           weihenstephanensis KBAB4]
          Length = 934

 Score = 75.0 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 84/218 (38%), Gaps = 10/218 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+      +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPLFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DENLVKQAPLFRDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEVHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLSEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
            T +  +   +        +L  +        KEE +E
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKMMHGKEEAEE 213


>gi|325957051|ref|YP_004292463.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC]
 gi|325333616|gb|ADZ07524.1| DNA polymerase III, alpha subunit [Lactobacillus acidophilus 30SC]
 gi|327183774|gb|AEA32221.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL
           1118]
          Length = 1435

 Score = 75.0 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 418 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH---HPLSEQTINLTSIT 473

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R     +    +     
Sbjct: 474 DEMVSAADDEDVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLSEITQPVVDTLEV 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y +++ H   H A  D+     +  K++    +       N
Sbjct: 534 SRLLHPEQNRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMYKLLDAFKKKYNEDNLN 591

Query: 189 EDRFFKEEKKTVPNISLL 206
               +    +        
Sbjct: 592 NLNGYAAHGEVYKRARPS 609


>gi|312883799|ref|ZP_07743518.1| DNA polymerase III, alpha subunit [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368548|gb|EFP96081.1| DNA polymerase III, alpha subunit [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 204

 Score = 75.0 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 9/176 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV+L+D      +FQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPNMGDRAIEIGAVKLVDGQVV-DSFQRLMNP-GFRVSTFIEGYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L+  PS   + + F  F   +N   IAHNA FD  F++AEL+R+N     + +  +   
Sbjct: 66  MLRTAPSCDEVMTSFSQFIAGEN--LIAHNASFDKRFLDAELERVNCGYSGEFACSLLVA 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
               +  PS +       +      +    H AL D+ + + +++ M+    Q   
Sbjct: 124 RRLIQDAPSHKLGELVRHRNI---ENDGVFHRALADAQVTAKLWLLMVEELEQYGI 176


>gi|229010951|ref|ZP_04168147.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM
           2048]
 gi|229132450|ref|ZP_04261304.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST196]
 gi|228651156|gb|EEL07137.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST196]
 gi|228750351|gb|EEM00181.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM
           2048]
          Length = 934

 Score = 75.0 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 84/218 (38%), Gaps = 10/218 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+      +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPLFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DENLVKQAPLFRDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEVHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLSEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
            T +  +   +        +L  +        KEE +E
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKMMHGKEEAEE 213


>gi|168187912|ref|ZP_02622547.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum C str. Eklund]
 gi|169294244|gb|EDS76377.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum C str. Eklund]
          Length = 1441

 Score = 75.0 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 66/180 (36%), Gaps = 4/180 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  S+ D+IIE GAV++ + +    +F  F+ P  +       +L  IT+E
Sbjct: 428 FVVFDLETTGFSSQYDKIIEFGAVKIKNGNII-DSFSAFVNPEMK-IPYRITELTSITNE 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD  +   +  +F  F  +        N        N     I  +       I    
Sbjct: 486 DVKDAETIDKVLPKFMKFAEDTVLVAHNSNFDMSFIRKNCNDLNIECNY-TVMDTIPLAK 544

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
               +    + +  +      +   HR+   A     +L   + K++      +     N
Sbjct: 545 FLFPELKRYKLNTIAKHLGVSLENHHRAVDDAKATGDILVHCF-KLLKEMEITSLNDLNN 603


>gi|229058278|ref|ZP_04196665.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH603]
 gi|228720049|gb|EEL71635.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH603]
          Length = 934

 Score = 75.0 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+      +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPLFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            ++ +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DEDLVKQAPLFRDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEVHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLSEIEKLPL 175


>gi|240047815|ref|YP_002961203.1| DNA polymerase III PolC [Mycoplasma conjunctivae HRC/581]
 gi|239985387|emb|CAT05400.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae]
          Length = 1455

 Score = 75.0 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 3/170 (1%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFD+ETTGL    + IIE GAV + D  +T  + Q F+         E  K+  IT 
Sbjct: 400 RYVVFDLETTGLSPVYNEIIEFGAVVIQDGIQT-ESHQFFVK-AKEPIPTEITKITNITQ 457

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + ++   ++          + ++  +AHNAKFD  F+    ++     +D   I    
Sbjct: 458 EMVDEQGIEATEAFYRISKIIK-DSILVAHNAKFDFNFLAELFKKEASMTIDQPIIDTLQ 516

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                      + L ++ K  G+       H A  D+ +LS V++  +  
Sbjct: 517 VSRFLNPSQKSHSLKNVSKLIGLYYDETVAHRADYDAEILSKVWLNFLTQ 566


>gi|42560899|ref|NP_975350.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|42492396|emb|CAE76992.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320644|gb|ADK69287.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           mycoides subsp. mycoides SC str. Gladysdale]
          Length = 1482

 Score = 75.0 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 4/202 (1%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FD+ETTGL  + D IIE GA+E    +   +   + + P  +       KL  IT+
Sbjct: 434 RMVFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDILIKPKTKLK-AFTQKLTNITE 492

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L+DKPS    F +  +   +  A  +AHNA FD  F++   +++    L+ + I    
Sbjct: 493 KMLEDKPSIEQAFKQINEIIKD--AILVAHNANFDFTFLSYWSEKLGYSKLENTIIDTLT 550

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                      + L SL KR  I+      H    D+ +L+D+Y +M+    +      T
Sbjct: 551 ISRIIYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERMLDETRK-KIKIIT 609

Query: 188 NEDRFFKEEKKTVPNISLLKRD 209
           + D    +      N++  K  
Sbjct: 610 DSDWNKIDPINYADNLNYYKNK 631


>gi|328470587|gb|EGF41498.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus 10329]
          Length = 204

 Score = 75.0 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 9/176 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV+L+D      +FQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPTLGDRAIEIGAVKLVDGEVV-DSFQQLMNP-GFRVSSFIENYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RIN     + +  +   
Sbjct: 66  MLRIAPSCEEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCGYSGEFACSLLVA 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
               +  PS +       K           H AL D+ + + +++ M+ G      
Sbjct: 124 RRLIQDAPSHKLGELVRYKNIDNDGI---FHRALADAQMTAKLWLLMVEGLENSGI 176


>gi|281202348|gb|EFA76553.1| DNA polymerase III [Polysphondylium pallidum PN500]
          Length = 725

 Score = 75.0 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 5/169 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FD+ET+G     D IIEIGAVEL++  +T  TFQ +  P  + +            
Sbjct: 320 RVVCFDLETSGFGPD-DSIIEIGAVELINGCRTGLTFQSYAKPKTQIHPAAEQIHQLSNF 378

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                 P    + S         ++  +AHN  FD   +  EL R         +   T+
Sbjct: 379 LLQDAPPIEFVLSSFMD---FVGDSILVAHNLAFDRRMLIQELVRSKTPFDINHKCFCTM 435

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL-LDSHLLSDVYIKMM 175
              R+ +  S   L+S+ ++  I      +     +DS +L+ VY  ++
Sbjct: 436 RYFRKMYKDSNYSLDSISQQLKINKLLLRRTHGALVDSEILAIVYKHLL 484


>gi|330999159|ref|ZP_08322878.1| putative DNA polymerase III, epsilon subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|329575359|gb|EGG56903.1| putative DNA polymerase III, epsilon subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 248

 Score = 75.0 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 16/218 (7%)

Query: 22  KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFS 81
           + DRIIEIG VEL ++  T++ F  ++ P  R+   E +++H IT+EFL  KP F+ I  
Sbjct: 5   EGDRIIEIGCVELGEHGLTDKNFHEYIDPE-RQMEAEVIRVHKITNEFLVGKPKFADIAD 63

Query: 82  EFWDFFNEQNAEWIA--HNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN 139
           +F +F             +  F    +    +   ++      IID++ +A+   P   N
Sbjct: 64  KFIEFVQGARLIIHNAQFDIGFLNEELRKLGKPSMEEICGKDNIIDSMELAKAAFPQMHN 123

Query: 140 DLNSLCKR--YGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEK 197
            L++LCKR     T   +  HGALLD+ LL  VY+ +      +                
Sbjct: 124 SLDALCKRLEIDTTRRVKEGHGALLDAELLGQVYLVLKQQQGILEIDAAPVSADVHDISD 183

Query: 198 KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
             +P             R T+E+L E+++ ++ + K A
Sbjct: 184 VELP-----------VIRATEEDLSENERVLEMVRKAA 210


>gi|227892603|ref|ZP_04010408.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
 gi|227865588|gb|EEJ73009.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
          Length = 1435

 Score = 75.0 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 418 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH---HPLSEQTINLTSIT 473

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R     +    +     
Sbjct: 474 DEMVSAADDEAVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTLEV 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y +++ H   H A  D+     +  K++    +       N
Sbjct: 534 SRLLHPEQNRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMYKLLDAFKKKYNEDNLN 591

Query: 189 EDRFFKEEKKTVPNISLL 206
               +    +        
Sbjct: 592 NLNGYAAHGEVYKRARPS 609


>gi|297625374|ref|YP_003687137.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921139|emb|CBL55686.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 203

 Score = 75.0 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    + DRIIEIG V L      +  +   + P   + +  A ++H IT 
Sbjct: 4   YAVLDLETTGFSPARGDRIIEIGLVRLDPQGHVDDEWSTLVNP---RRTVRATRVHHITS 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDT 126
             +   P+ + +     D   +     +AHN+ FDVGF+ AEL+             + T
Sbjct: 61  ADVAAAPTMAELAPGLVDKLRD--RVVVAHNSSFDVGFLTAELRTAGMTIPPEPIPSVCT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +  + R   +    L   C+  G++   R  H AL D+   ++++   +    
Sbjct: 119 MRQSTRFLHARSRRLVDCCEAAGVS--LRDAHSALGDARATAELFGHYLRAAG 169


>gi|269968192|ref|ZP_06182223.1| hypothetical protein VMC_36530 [Vibrio alginolyticus 40B]
 gi|269827190|gb|EEZ81493.1| hypothetical protein VMC_36530 [Vibrio alginolyticus 40B]
          Length = 204

 Score = 75.0 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 9/177 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV+L++      +FQ  + P G + S        IT+ 
Sbjct: 8   VVLDFETTGLSPTLGDRAIEIGAVKLVNGEVV-DSFQQLMNP-GFRVSSFIENYTSITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127
            L+  PS   + + F +F   +N   +AHNA FD  F++AE  +       + +  +   
Sbjct: 66  MLRSAPSCEEVMASFSEFIAGEN--LVAHNASFDKRFLDAELERINCGSSGEFACSLLVA 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
               ++ PS +       K      +    H AL D+ + + +++ M+ G       
Sbjct: 124 RRLIQEAPSHKLGELVRYKNI---DNDGVFHRALADAQMTAKLWLLMVEGIENSGVE 177


>gi|310827165|ref|YP_003959522.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
 gi|308738899|gb|ADO36559.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
          Length = 1369

 Score = 75.0 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 5/220 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL    D IIEI AV++ +      TF   + P+ R   P    L GIT++
Sbjct: 354 FVFFDLETTGLIPGKDNIIEIAAVKIKNKHIV-DTFSKIVNPH-RPIPPFITNLTGITNQ 411

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127
            ++D     +    F +F  +     +AHNAKFD+GF+         ++ +     +   
Sbjct: 412 MVEDGEEEEAAVKAFCEFCGD--LILVAHNAKFDMGFMEIALNAHHLENNITYIDTLAMS 469

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                          +   +  +   HR+   ++  + +   +         +   G   
Sbjct: 470 RTLIPTINKHNLKKLASYFKVDMGHHHRALDDSVCSAKIFVKLMELAQKRDVEEVAGLNG 529

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
             D     +     +I +  +++     + K   + H   
Sbjct: 530 LMDVEQIIKSGDTYHIIIYAKNQAGLKDLYKLVSEAHINY 569


>gi|229166488|ref|ZP_04294244.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH621]
 gi|228617062|gb|EEK74131.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH621]
          Length = 934

 Score = 75.0 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 85/218 (38%), Gaps = 10/218 (4%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+      +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPLFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            ++ +K  P F  +     +      A ++AHN  FD  F+N EL++     +   +I  
Sbjct: 62  DEDLVKQAPLFRDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEVHCPKIDT 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +    L  L K++ +       H A  D+   ++++++ +          
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLSEIE--KLPL 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
            T +  +   +        +L  +        KEE +E
Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKMMHGKEEAEE 213


>gi|256851162|ref|ZP_05556551.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN]
 gi|260660586|ref|ZP_05861501.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN]
 gi|282934628|ref|ZP_06339871.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 208-1]
 gi|297206027|ref|ZP_06923422.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16]
 gi|256616224|gb|EEU21412.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN]
 gi|260548308|gb|EEX24283.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN]
 gi|281301203|gb|EFA93504.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 208-1]
 gi|297149153|gb|EFH29451.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16]
          Length = 936

 Score = 75.0 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 4/222 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     DRII+ G   + +     +T+   + P           L GI   
Sbjct: 10  FAVVDLETTGTRRGQDRIIQFGCAIIKNRQII-KTYSFLINPK-ADIPQAVQNLTGIKPA 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++P F +  ++  D   +        N                K        ++   
Sbjct: 68  DVVNQPVFKNFATQIEDILQDTVFVAHNINFDLPFLNAELAANGFPKLRNRAIDTVELSK 127

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           IA    PS R    +       T  H++   A   + LL  +  K+            + 
Sbjct: 128 IAFPTLPSYRLSDLTHSLNLKHTNPHQADSDAYATASLLLKILDKLESLPQSTLNTLTSL 187

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
                ++ +     IS   R +     ++K+ L  H   ++ 
Sbjct: 188 SKGLLRDTQFIFKEISEFTRQEKRP--LSKKYLQIHSLVLKK 227


>gi|325001618|ref|ZP_08122730.1| hypothetical protein PseP1_22781 [Pseudonocardia sp. P1]
          Length = 403

 Score = 75.0 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 69/208 (33%), Gaps = 4/208 (1%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   + D I E+GAV +             + P  R    +  +L GIT+  L
Sbjct: 27  VVDLETTGGSHRADAITEVGAVSVRGGESIGE-LSTLVDPGTR-VPADVTRLTGITNGML 84

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P   ++     D      +  +AHNA FD GF+ A  +R  +    P  +       
Sbjct: 85  AGAPPLGAVLPPVLDLLRG--SVLVAHNAPFDTGFLRAACERHERPWPSPPVLCTARLAR 142

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
                S    +                H AL D+    +V   ++     +         
Sbjct: 143 AVLPRSECPSVRLGALAAHFGCRTTPDHRALTDARATVEVLHHLLERIGNLGVQSLEELL 202

Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITK 218
           +  K+     P  +  +R        ++
Sbjct: 203 QLVKDRAPHRPTTAQRQRRHLAKRVPSE 230


>gi|167040287|ref|YP_001663272.1| DNA polymerase III PolC [Thermoanaerobacter sp. X514]
 gi|300914371|ref|ZP_07131687.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307724393|ref|YP_003904144.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513]
 gi|166854527|gb|ABY92936.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514]
 gi|300889306|gb|EFK84452.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307581454|gb|ADN54853.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513]
          Length = 1407

 Score = 75.0 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 7/196 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTGL + ND IIEIGAV++ +      TF+ F+ P     S    KL GI +  +
Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKEGKII-DTFETFVNPK-IPISSFITKLTGIDESMV 453

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD PS   I  +F +     N+  +AHNA FDV FI ++ ++ N +  +       LS  
Sbjct: 454 KDAPSIEEILPKFLE--FASNSVLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRH 511

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
             K   +            + +     H A+ D+   ++++IK +    ++      + +
Sbjct: 512 LYKDLKNYKLDT---LAEHLQVKLEHHHRAVDDAMATAEIFIKTIDRLKELGVEKVKDIN 568

Query: 191 RFFKEEKKTVPNISLL 206
              KE +  +  + + 
Sbjct: 569 AILKESEVDIRKLPVY 584


>gi|152975987|ref|YP_001375504.1| DNA polymerase III subunit epsilon [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024739|gb|ABS22509.1| DNA polymerase III, epsilon subunit [Bacillus cytotoxicus NVH
           391-98]
          Length = 299

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 4/173 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +V D ETTG    NDRII++ AV   ++      F  F+ P  R        L GIT+
Sbjct: 9   NYVVIDFETTGFHPYNDRIIQVAAVRYRNHEL-ADQFVSFVNPE-RSIPSRITSLTGITN 66

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P+   +   F  F         AHNA FD+ F+ + + R      +   I   L
Sbjct: 67  YRVSDAPTVQEVLPLFLAFLGNDTIV--AHNASFDMRFLKSNMSRFQLGEPNNKVIDTVL 124

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              +    +    L +L +  GI +S  +     +    +      M   G +
Sbjct: 125 LAKKYMKHAPNFKLETLKRMLGIRLSSHNALDDCITCAAVYQQCANMQGDGRK 177


>gi|266619529|ref|ZP_06112464.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
 gi|288868940|gb|EFD01239.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
          Length = 235

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGLD K D+IIEIGAV +     T   F+ F+ P  R    +   L GI D+
Sbjct: 5   YVAVDLETTGLDPKRDKIIEIGAVRIEAGEITAE-FESFVNP-YRMLEAKTRTLTGIRDQ 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P    +   F    N      +  +                 +    + I     
Sbjct: 63  DVVHAPGIEEVLPVF---LNFAGELPLLGHRIIFDYSFLKRAAVNQGESFSRAGIDTLTL 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R +L + C  +GI    R  H A+ D+     +Y  M     +      + 
Sbjct: 120 ARLFMPAEERKNLKAACGWFGID--QRETHRAMADAVAAHQLYQAMKKRYGKERPDAFSE 177

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
           ++  +K +K+   +    +  + L 
Sbjct: 178 KNLIYKVKKEQPASKRQKEHLQDLI 202


>gi|186701836|ref|ZP_02971504.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
 gi|186701125|gb|EDU19407.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
          Length = 1442

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 4/205 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL    D IIE GA+ + +  +     Q  + P  + N       +     
Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFLVKPIQQINEN---ITNLTNIS 465

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +     +         N   +AHN          +           +  IDTL 
Sbjct: 466 QEMVNNAIDEKTALLKIKEIFDNHILVAHNGINFDINFINQRLLKWGLEPLKNPSIDTLM 525

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M       +FG    
Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEIAHRADYDAIVLADVFKVMKNNLFN-DFGITNL 584

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
            +   K +   + N S         
Sbjct: 585 NEINTKLQTVMLKNRSFGNWINLYI 609


>gi|23099048|ref|NP_692514.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus
           iheyensis HTE831]
 gi|32469727|sp|Q8EQU6|DPO3_OCEIH RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|22777276|dbj|BAC13549.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus
           iheyensis HTE831]
          Length = 1428

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 6/221 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      +R F+ F  P+    S   + L GITD+
Sbjct: 414 FVVFDVETTGLSAVYDTIIELAAVKIKGGEIVDR-FESFANPHHA-LSQTTIDLTGITDD 471

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P  + +  +F       N   +AHNA FD+GF+N   QRI+ +      +     
Sbjct: 472 MVNDAPEVADVLKDFHT--WMGNDILVAHNASFDMGFLNQGFQRIDYEKASNPVVDTLEL 529

Query: 129 IARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                     + LN+LCK   I     HR+ + A    +LL  +  +++      +    
Sbjct: 530 ARFLLPELRNHRLNTLCKHLDIELTQHHRAIYDAEATGYLLWKLVQRLVEKEISNHLELN 589

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
            +       ++    + +L+ + +     + K     H   
Sbjct: 590 NHMGENNAYQRSRPYHCTLIAQTEEGLKNLYKLVSRAHIDF 630


>gi|54023690|ref|YP_117932.1| hypothetical protein nfa17220 [Nocardia farcinica IFM 10152]
 gi|54015198|dbj|BAD56568.1| putative DNA polymerase III subunit [Nocardia farcinica IFM 10152]
          Length = 598

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 4/167 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG   + D I EIGAV++         F   + P GR   P  +++ GIT  
Sbjct: 27  FVVVDLETTGTSPEGDAITEIGAVKVRGGEVLGE-FATLVNP-GRAIPPAVVQVTGITTA 84

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P   ++   F +      A  +AHNA+FD  F+ A   R      D   +     
Sbjct: 85  LVYAAPRIEAVLPGFLE--FAAGAVLVAHNARFDTAFLRAAAARCALPWPDAPVLCTVKL 142

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R         +        +  S +  H AL D+    DV   ++
Sbjct: 143 ARRVLGRDEAPSVRLASLARLLGASTQPTHRALDDARATVDVLHALI 189


>gi|160880751|ref|YP_001559719.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans
           ISDg]
 gi|160429417|gb|ABX42980.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans
           ISDg]
          Length = 1527

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 7/195 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG  S  D+IIEIGAV++   +  +R F  F+ P          KL  ITDE 
Sbjct: 498 VVFDIETTGFSSVKDKIIEIGAVKIQHGTIVDR-FSTFINPE-VPIPYHIQKLTSITDEM 555

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    +   I  EF  F        +AHNA FD+GFI  + + +N      S     L+ 
Sbjct: 556 VIGSRTIEEILPEFLSFCEGCY--LVAHNASFDIGFITKKAEFLNIPLTVTSVDTVGLAR 613

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
               H ++            ++IS  + H A+ D+   +++Y+K +    +         
Sbjct: 614 VLLNHLNNFKLDTVAKA---LSISLENHHRAVDDAGCTAEIYLKFLEMLRERGIETLAQI 670

Query: 190 DRFFKEEKKTVPNIS 204
           +R  +     +  + 
Sbjct: 671 NRAEEVTPDVIKKMP 685


>gi|227505453|ref|ZP_03935502.1| possible exonuclease, RNase T and DNA polymerase III
           [Corynebacterium striatum ATCC 6940]
 gi|227197946|gb|EEI77994.1| possible exonuclease, RNase T and DNA polymerase III
           [Corynebacterium striatum ATCC 6940]
          Length = 1118

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 93/231 (40%), Gaps = 22/231 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D ETTG  S  DR+IEIG V L    +   T++  + P  R      +  H IT 
Sbjct: 6   RYAVVDFETTGFGS-TDRVIEIGVVLLDHNREVESTWETLVQPQ-RDIPNSFV--HHITP 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIIDT 126
             + D P F  +  EF+D  N +     AHNA F+V F+  E   +     +  + ++DT
Sbjct: 62  TDVVDAPLFGEVAGEFFDLLNGRTVV--AHNAPFEVRFLQREFSNLGVAWPNYGAWVVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
             + ++ +P     L    K  GIT  +   H AL D+   ++++  ++  G        
Sbjct: 120 KRLFQQTYPGEGTTLEHALKVVGIT--NARPHSALADTLATAELFAWLVSQG-------- 169

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD--KTIQTLGKNA 235
              D        T+P      R   L      E+L  H   + +  L   A
Sbjct: 170 --NDVVISSRAITLPPHEFPARGALLPRTALAEDLT-HKRGEWLARLADTA 217


>gi|304404288|ref|ZP_07385950.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus
           YK9]
 gi|304347266|gb|EFM13098.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus
           YK9]
          Length = 1439

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 99/236 (41%), Gaps = 17/236 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL   N +IIE+  V++    + +R F  F+ P+  K      +L  ITDE
Sbjct: 423 YVVFDIETTGLSIINCKIIELAGVKMRGGQEIDR-FSTFINPH-EKIPYHIQQLTNITDE 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P       EF +F  +  A  +AHNA+FD+GFI A  + I    +    +     
Sbjct: 481 MVVDAPELEPKLREFVEFIGD--AVLVAHNARFDIGFIQANCKAIGLPEVMNPVLDTLEL 538

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L  RY   I+  + H A+ DS  L  V   ++   ++ N      
Sbjct: 539 ARFLHPSMKNHRLNTLSARY--KINLENHHRAIDDSIALGGVLFGLIKDCNERNVTGLHQ 596

Query: 189 EDRFFKEEKKTVPNIS--------LLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236
            + +   +                + K++      ++  E   H K +  + K+ +
Sbjct: 597 LNDYVGLDLSNSRPFHCGIYALNAVGKKNLFKLISLSHTE---HFKRVACIPKSKL 649


>gi|251797402|ref|YP_003012133.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2]
 gi|247545028|gb|ACT02047.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2]
          Length = 1437

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 101/236 (42%), Gaps = 17/236 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTGL   N++IIE+  V++ +  + +R F  F+ P+  K      +L  I DE
Sbjct: 421 YIVFDIETTGLSIINNKIIELAGVKMREGKEVDR-FSTFINPH-EKIPYHIQQLTNINDE 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P       EF DF  +  +  +AHNA+FD+GFI A L+ I    +    +     
Sbjct: 479 MVKDAPELEPKLREFIDFIGD--SILVAHNARFDIGFIQANLKSIGMPDVTNPVLDTLEL 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L  +Y ++    + H A+ DS  L  V   ++   ++ N      
Sbjct: 537 ARFLHPTMKNHRLNTLSAKYKVS--LDNHHRAVDDSVALGGVLFGLINDAAERNITGLHQ 594

Query: 189 EDRFFKEEKKTVPNISLL--------KRDKPLFTRITKEELDEHDKTIQTLGKNAI 236
            + +   +                  K++      I+  E   H K +  + K+ +
Sbjct: 595 LNDYVGLDISNSRPFHCNIYALNAAGKKNLFKMVSISHTE---HFKRVACIPKSKL 647


>gi|189425539|ref|YP_001952716.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ]
 gi|189421798|gb|ACD96196.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ]
          Length = 168

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 5/169 (2%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTGL  +N  R+IEIGAV + +   T       +  +G   S  A ++HGI+
Sbjct: 3   RVIVVDTETTGLSVRNQGRVIEIGAVAVENGQITAE-LATLIN-SGTPISYGAYRVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ L  +P+   ++  F +     N+  +AHNA FD  FIN EL  +     +P      
Sbjct: 61  EQMLAGRPTPQEVWPWFLE--FAGNSPLVAHNAAFDRAFINHELHLLGMSLANPWHCTVR 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           LS  +     +          +G       +H AL D+ + + V+++++
Sbjct: 119 LSRRKLPRLMNHKLETVYKHLFGELPEEVQRHRALDDARMAARVWVELL 167


>gi|104161981|emb|CAJ75690.1| DNA polymerase III, alpha subunit [uncultured Thermotogales
           bacterium]
          Length = 1428

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 84/219 (38%), Gaps = 4/219 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL+ K D IIEIGA+++        T+  F+ P  ++ S     L GIT++
Sbjct: 418 FLVFDLETTGLNPKEDEIIEIGAIKMKGSEVLG-TYSTFVKPE-KELSAMITSLTGITED 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +      +  EF      +    +AHNA FD GF+   +++      +   I     
Sbjct: 476 MLSEARPIKEVLPEFTK--FTEGCILVAHNASFDYGFVRNSVKKHFGGDWEMPCIDTLAL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   S +  N + +       H         +  +   ++++       N      
Sbjct: 534 AKSLFRSKSYSLDNVVKRLKLGHFDHHRAFEDAKVTAEVLKKFVQLAKKRGVQNVNELEK 593

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
             +    +     +IS+L ++K     + +     H K 
Sbjct: 594 LRKNQNLDSLKPFHISILAKNKKGLENLYRLVTASHTKY 632


>gi|331703357|ref|YP_004400044.1| DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. capri
           LC str. 95010]
 gi|328801912|emb|CBW54065.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 1482

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 4/202 (1%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FD+ETTGL  + D IIE GA+E    +   +   + + P  +       KL  IT+
Sbjct: 434 RMVFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDILIKPKTKLK-AFTQKLTNITE 492

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L+DKPS    F +  +   +  A  +AHNA FD  F++   +++    L+ + I    
Sbjct: 493 KMLEDKPSIEQAFKQINEIIKD--AILVAHNANFDFTFLSYWSEKLGYGKLENTIIDTLT 550

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                      + L SL KR  I+      H    D+ +L+D+Y +M+    +      T
Sbjct: 551 ISRIIYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERMLDETRK-KIKIIT 609

Query: 188 NEDRFFKEEKKTVPNISLLKRD 209
           + D    +      N++  K  
Sbjct: 610 DSDWNKIDPINYTDNLNYYKNK 631


>gi|217077387|ref|YP_002335105.1| DNA polymerase III PolC [Thermosipho africanus TCF52B]
 gi|217037242|gb|ACJ75764.1| DNA polymerase III, alpha subunit, Gram-positive type [Thermosipho
           africanus TCF52B]
          Length = 1365

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 12/226 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTG +++ D IIE GAV+  D      TF+ F+ PN +  +    KL GIT++ L
Sbjct: 350 VFDLETTGTNARFDEIIEFGAVKYKDGKII-DTFKSFVKPN-KDINDFTQKLTGITNDML 407

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD P    +  +F +F        +AHNA FD GFI    +++    L     +DTL ++
Sbjct: 408 KDAPGIEEVVPKFLEFIEG--TVLVAHNADFDYGFIREVYRKMYDKDL-IMPYLDTLKLS 464

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY---IKMMVGGSQINFG--- 184
           +                    +     H A  D+ + ++++   ++++      +     
Sbjct: 465 KVILKGKVKSFGLGKLVEYFKLGPFKHHRAFEDASVTAELFGKLVELLGKMGIKSLNDIN 524

Query: 185 -FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
             K          K+   +I++L +DK     + K   D H K  +
Sbjct: 525 KLKAGTSISSIRTKRVFNHITILVKDKIGLKNLYKLVSDAHVKYFK 570


>gi|254229191|ref|ZP_04922610.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp.
           Ex25]
 gi|262395541|ref|YP_003287394.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25]
 gi|151938276|gb|EDN57115.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp.
           Ex25]
 gi|262339135|gb|ACY52929.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25]
          Length = 204

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 9/176 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV+L+D      +FQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPTLGDRAIEIGAVKLVDGEVV-DSFQRLMNP-GFRVSSFIENYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RIN     + +  +   
Sbjct: 66  MLRSAPSCEEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCGYSGEFACSLLVA 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
               +  PS +       K      +    H AL D+ + + +++ M+ G      
Sbjct: 124 RRLIQDAPSHKLGELVRYKNI---DNDGVFHRALADAQMTAKLWLLMVEGLENSGI 176


>gi|329569951|gb|EGG51706.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Enterococcus faecalis TX1467]
          Length = 240

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSTF 201


>gi|257463693|ref|ZP_05628083.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|317061240|ref|ZP_07925725.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|313686916|gb|EFS23751.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
          Length = 1450

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 96/218 (44%), Gaps = 8/218 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V+D+ET G +S   +IIEIGAV++++    +R F   + P G+      + +  ITD 
Sbjct: 424 FVVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDR-FSQLINP-GQSIPQNIVDVTNITDS 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++++P    +   F +F     +  +AHNA FD+G++  + ++      +P+ I     
Sbjct: 482 MVQNEPKLEEVLPNFLEFIRG--SILVAHNADFDIGYLKQQCKKYGYSDFNPAFIDTLQM 539

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG--FK 186
                    +  L  L K+ G+     + H A+ D     ++++  +    +       +
Sbjct: 540 AKDLYPELKQFGLGPLNKKLGL--YLENHHRAVDDCQATGNMFLIFLDKYLERGITKLSE 597

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
             E      +K+   NI LL +++     + +   D H
Sbjct: 598 MQEAFPVNTKKQNTRNIMLLAKNRQGLENLNRLVSDAH 635


>gi|193216948|ref|YP_002000190.1| DNA polymerase III PolC [Mycoplasma arthritidis 158L3-1]
 gi|193002271|gb|ACF07486.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1]
          Length = 1438

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 11/226 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL  + + IIE GA  + +      + Q F+ P  +   P   ++  ITD 
Sbjct: 405 YVVFDLETTGLSPRFNEIIEFGASIIENG-IIKESHQFFIKP-TKPIPPSITEITKITDN 462

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +  S      + +D    +N   +AHNAKFD+        +   D      I     
Sbjct: 463 TVANGYSQEEGVRKIYDIL--KNRICVAHNAKFDINVCKENFLKYGLDNSKIIGIDSLAI 520

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  +    L  + K++ +  +    H A  D+++L++V+I M+             
Sbjct: 521 ARFLIDEAKSYRLEIVAKKFNVYYARNEAHRADYDANVLANVWILMI-------LKLARE 573

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
           ++     E   V +  L  +  P   R+  +      K  + + K+
Sbjct: 574 KNIRTANELAAVNDDKLFAKKFPREVRVIAKNQKGLKKLFKIISKS 619


>gi|257416585|ref|ZP_05593579.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
 gi|257158413|gb|EEU88373.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
          Length = 929

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSTF 201


>gi|167037626|ref|YP_001665204.1| DNA polymerase III PolC [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320116041|ref|YP_004186200.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856460|gb|ABY94868.1| DNA polymerase III, alpha subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929132|gb|ADV79817.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 1407

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 7/196 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTGL + ND IIEIGAV++ +      TF+ F+ P     S    KL GI +  +
Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKEGKII-DTFETFVNPK-IPISSFITKLTGIDESMV 453

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD PS   I  +F +     N+  +AHNA FDV FI ++ ++ N +  +       LS  
Sbjct: 454 KDAPSIEEILPKFLE--FASNSVLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRH 511

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
             K   +            + +     H A+ D+   ++++IK +    ++      + +
Sbjct: 512 LYKDLKNYKLDT---LADHLQVKLEHHHRAVDDAMATAEIFIKTIDRLKELGVEKVKDIN 568

Query: 191 RFFKEEKKTVPNISLL 206
              KE +  +  + + 
Sbjct: 569 AILKESEVDIRKLPVY 584


>gi|42525158|ref|NP_970538.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
 gi|39577369|emb|CAE81192.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
          Length = 217

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 6/171 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR I FD+ETTG     D+I+EIGAV  +D       F   + P  R   P A  ++GI+
Sbjct: 13  MRFIAFDLETTGTVPGVDQIVEIGAVRFIDGQP-EAIFATLIDP-LRPIPPGASAVNGIS 70

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +K KP   +I   F +F  E     +AHNA FD  F+ A++++          +   
Sbjct: 71  DDMVKGKPLIDTILPAFAEFCGE--DVLVAHNAPFDSQFLIADIKKHETTAPRGVILDSL 128

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
               +         L +L +     I   + H A  D+  L  ++ +MM  
Sbjct: 129 PIARKVFPGLPNYKLGTLVQHL--KIPTSNFHRAEEDATYLGHMFSQMMKR 177


>gi|331084769|ref|ZP_08333857.1| hypothetical protein HMPREF0987_00160 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410863|gb|EGG90285.1| hypothetical protein HMPREF0987_00160 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 238

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 70/223 (31%), Gaps = 8/223 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI+      + FD+ETTGL  + D IIEIGAV++ D   T+R F  FL P    +     
Sbjct: 1   MIKT----YVAFDLETTGLSEERDSIIEIGAVKVTDGKVTDR-FMEFLKPAEEISPMITQ 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                 +     + + + I               + HN  FD  F+     +        
Sbjct: 56  ITGITNEMVAHARNTKAVIDDFMG---FCGEEVLLGHNILFDYKFMKRYACKYQHSFERR 112

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                 ++    K   SR+             +    +   L +  L             
Sbjct: 113 GIDTLKIARKVHKDLESRSLEALCAHYQIKNDAAHRAYHDALATAKLYHCLGHYFEEKEP 172

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
             F  +    +  KE+  T      L++          E+L+ 
Sbjct: 173 NLFVPEPLFYQPRKEQPATEKQKRYLEKLCGWHRIAVPEDLEA 215


>gi|310641590|ref|YP_003946348.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2]
 gi|309246540|gb|ADO56107.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2]
          Length = 1438

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 6/174 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL    ++IIEI AV++ +  + +R +  F+ P+ R       +L  I DE
Sbjct: 421 YVVFDIETTGLSVTQNKIIEIAAVKMHEGKEIDR-YATFVNPHER-IPYNIQQLTNINDE 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  EF       +A  +AHNA+FD+GFI A L+++    +    +     
Sbjct: 479 MVKDAPDVEPVMKEFVA--FAGDAVLVAHNARFDIGFIQATLRKMGLPEMTNPVLDTLEL 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
                     + LN+L  +Y +     S H A+ D+  L++V   ++    QI 
Sbjct: 537 ARLLFPTMKNHRLNTLTSKYKVA--LESHHRAIDDTVALTEVLNGLLNDAEQIK 588


>gi|256384095|gb|ACU78665.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|256384927|gb|ACU79496.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|296455696|gb|ADH21931.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
          Length = 1482

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 4/202 (1%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FD+ETTGL  + D IIE GA+E    +   +   + + P  +       KL  IT+
Sbjct: 434 RMVFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDILIKPKAKLK-AFTQKLTNITE 492

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L+DKPS    F +  +   +  A  +AHNA FD  F++   +++    L+ + I    
Sbjct: 493 KMLEDKPSIEQAFKQINEIIKD--AILVAHNANFDFTFLSYWSEKLGYGKLENTIIDTLT 550

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                      + L SL KR  I+      H    D+ +L+D+Y +M+    +      T
Sbjct: 551 ISRIIYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERMLDETRK-KIKIIT 609

Query: 188 NEDRFFKEEKKTVPNISLLKRD 209
           + D    +      N++  K  
Sbjct: 610 DSDWNKIDPINYADNLNYYKNK 631


>gi|325289205|ref|YP_004265386.1| DNA polymerase III, epsilon subunit [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964606|gb|ADY55385.1| DNA polymerase III, epsilon subunit [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 410

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 70/185 (37%), Gaps = 8/185 (4%)

Query: 9   KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTGL  +  DRIIE+  + L    +    ++  + P           +H I+ 
Sbjct: 4   YAVLDLETTGLFPEKHDRIIEVAIIILNSKGEIADQYETLVNP---DRDLGPTHIHKISA 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + + P F  I  +       ++     HN  +D  FI  E +R+  +  +P       
Sbjct: 61  GMVSEAPKFKDIAGDIIHCLAGKHII--GHNIAYDYRFIKHEFRRLKVEIPEPQMSCTFH 118

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
              + +       L +LC  + I + H+  H A  D +  + ++  ++          K 
Sbjct: 119 LTRKVEPDLPCRKLEALCSYFDIPLEHK--HAAYFDCYATAVLFQTLLKKHGIKILEEKE 176

Query: 188 NEDRF 192
            ++  
Sbjct: 177 IQEHI 181


>gi|209964314|ref|YP_002297229.1| exonuclease, putative [Rhodospirillum centenum SW]
 gi|209957780|gb|ACI98416.1| exonuclease, putative [Rhodospirillum centenum SW]
          Length = 699

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 8/177 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            +VFD ETTGL+  + D ++ +  V +++    T  TFQ  + P GR     +  +HGIT
Sbjct: 506 YVVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINP-GRAIPAASAAIHGIT 564

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + + P   ++   F  F  +  A  +AHNA FD+ F+  + +        P      
Sbjct: 565 DAMVAEAPRAEAVLPPFRAFVGD--AVLVAHNAAFDLKFLRLKQRAAGVRFDGPVLDTMI 622

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           LS   +      +      +   + I    +H A+ DS + + +++++M        
Sbjct: 623 LSRQIQGDHGEHSLDGLAAR---LGIGLVDRHSAMGDSLMTAAIFLRLMDMLETQGI 676


>gi|256763069|ref|ZP_05503649.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|257079582|ref|ZP_05573943.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|294779459|ref|ZP_06744857.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis PC1.1]
 gi|307270866|ref|ZP_07552153.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4248]
 gi|312903707|ref|ZP_07762881.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0635]
 gi|256684320|gb|EEU24015.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256987612|gb|EEU74914.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|294453465|gb|EFG21869.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis PC1.1]
 gi|306512779|gb|EFM81424.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4248]
 gi|310632899|gb|EFQ16182.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0635]
 gi|315166434|gb|EFU10451.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1341]
          Length = 929

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSTF 201


>gi|315173642|gb|EFU17659.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1346]
          Length = 929

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSTF 201


>gi|315035644|gb|EFT47576.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0027]
          Length = 929

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSTF 201


>gi|256963550|ref|ZP_05567721.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|307271490|ref|ZP_07552762.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0855]
 gi|256954046|gb|EEU70678.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|306511762|gb|EFM80760.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0855]
          Length = 929

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSTF 201


>gi|326389440|ref|ZP_08211007.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994445|gb|EGD52870.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 1407

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 7/196 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTGL + ND IIEIGAV++ +      TF+ F+ P     S    KL GI +  +
Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKEGKII-DTFETFVNPK-IPISSFITKLTGIDESMV 453

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD PS   I  +F +     N+  +AHNA FDV FI ++ ++ N +  +       LS  
Sbjct: 454 KDAPSIEEILPKFLE--FASNSVLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRH 511

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
             K   +            + +     H A+ D+   ++++IK +    ++      + +
Sbjct: 512 LYKDLKNYKLDT---LADHLQVKLEHHHRAVDDAMATAEIFIKTIDRLKELGVEKVKDIN 568

Query: 191 RFFKEEKKTVPNISLL 206
              KE +  +  + + 
Sbjct: 569 AILKESEVDIRKLPVY 584


>gi|315497459|ref|YP_004086263.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB
           48]
 gi|315415471|gb|ADU12112.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB
           48]
          Length = 717

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG  S N+R+ EIGAV++ +      T+Q  + P  R+  P   +L GI++  +
Sbjct: 547 VVDIETTGGQSANERVTEIGAVKIRNGEII-DTWQSLINPE-RRIPPFITELTGISNAMV 604

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D P F+ I  +F  F       ++AHN  FD GF++AE +R+ +    P          
Sbjct: 605 RDAPRFADIADDFDAFLKG--TVFVAHNVNFDYGFLSAEYRRLERPFRYPKMCTVASMRR 662

Query: 131 R 131
            
Sbjct: 663 H 663


>gi|156741527|ref|YP_001431656.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM
           13941]
 gi|156232855|gb|ABU57638.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM
           13941]
          Length = 944

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 11/180 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGL++  D IIEI AV+         TF   + P        + +L GIT E
Sbjct: 5   YVAIDVETTGLEAGVDEIIEIAAVKFRTGEVI-ETFDTLVQP-RHSLPLNSSRLTGITAE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P FS +   F  F   +N   + HN +FD+  + A+  R+ +   D   +     
Sbjct: 63  MLAGAPRFSEVAPRFAAFL--KNYPLVGHNVRFDINMLQAQGMRLPQPAFDTFELA---- 116

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  +    L++L +  GI       H AL D+ +   V++ ++     ++      
Sbjct: 117 -TLLMPRTPAYRLSALAETLGIVH--DEAHRALSDADVTRQVFLHLLRRIDALSLNDLNE 173


>gi|315161735|gb|EFU05752.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0645]
          Length = 929

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSTF 201


>gi|255972155|ref|ZP_05422741.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|255963173|gb|EET95649.1| DNA polymerase III [Enterococcus faecalis T1]
          Length = 929

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSTF 201


>gi|229549451|ref|ZP_04438176.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis ATCC 29200]
 gi|256956656|ref|ZP_05560827.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|257419833|ref|ZP_05596827.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|300861259|ref|ZP_07107346.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
           faecalis TUSoD Ef11]
 gi|312953414|ref|ZP_07772254.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0102]
 gi|229305688|gb|EEN71684.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis ATCC 29200]
 gi|256947152|gb|EEU63784.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|257161661|gb|EEU91621.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|300850298|gb|EFK78048.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
           faecalis TUSoD Ef11]
 gi|310628623|gb|EFQ11906.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0102]
 gi|315152082|gb|EFT96098.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0031]
 gi|315159114|gb|EFU03131.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0312]
 gi|315170323|gb|EFU14340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1342]
 gi|327535661|gb|AEA94495.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis OG1RF]
          Length = 929

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSTF 201


>gi|239826652|ref|YP_002949276.1| DNA polymerase III PolC [Geobacillus sp. WCH70]
 gi|239806945|gb|ACS24010.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70]
          Length = 1435

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + IIE+ AV++ D    +R F  F  P+    S   ++L GITD+
Sbjct: 420 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FTSFANPH-HPLSITTIELTGITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD P    +  +F+D+  +  +  +AHNA FD+GF+N    ++    +    I     
Sbjct: 478 MLKDAPDVEEVLRQFYDWMGD--SILVAHNASFDIGFLNVGFTKLGLGKVTNPVIDTLEL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK++   I     H A+ D+     + ++++    +       +
Sbjct: 536 ARFLYPELKNHRLNTLCKKF--DIELTQHHRAIYDAEATGYLLMRLLKDAQERGI-LYHD 592

Query: 189 EDRFFKEEKKTVPNISLL 206
           E     +E+ +       
Sbjct: 593 ELNERSKEEVSYQRSRPF 610


>gi|256853717|ref|ZP_05559082.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|307291048|ref|ZP_07570934.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0411]
 gi|256710660|gb|EEU25703.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|306497897|gb|EFM67428.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0411]
 gi|315030986|gb|EFT42918.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4000]
          Length = 929

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSTF 201


>gi|82523686|emb|CAI78468.1| Rad3-related DNA helicases [uncultured candidate division WS3
           bacterium]
          Length = 965

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 5/174 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG+DS+ DRIIE+GAV ++D      TF+ F+ P G     + + L GI+D 
Sbjct: 28  FVGLDLETTGVDSRVDRIIEVGAVRVVDGR-VADTFESFVNP-GCPIPSDIVHLTGISDA 85

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+   +     +F     +  +AH+A FD GF++          +    + DTL 
Sbjct: 86  DVAGAPTIDEVLPRIIEFIGG--SPIVAHHAPFDTGFLDEAAGGRPGLLVGRGGVFDTLP 143

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + R   P   N   +   R+   I     H A  D+  +SD+++ ++    QI 
Sbjct: 144 LTRALLPRLPNHRLATAARF-FDIPTGRSHRATDDARAVSDLFLALLGVLDQIG 196


>gi|323481332|gb|ADX80771.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           62]
          Length = 929

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSTF 201


>gi|315032870|gb|EFT44802.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0017]
          Length = 929

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSTF 201


>gi|307287736|ref|ZP_07567779.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0109]
 gi|306501474|gb|EFM70777.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0109]
 gi|315164835|gb|EFU08852.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1302]
          Length = 929

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSTF 201


>gi|257087406|ref|ZP_05581767.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|256995436|gb|EEU82738.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|315025444|gb|EFT37376.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2137]
          Length = 929

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSTF 201


>gi|291521660|emb|CBK79953.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Coprococcus catus GD/7]
          Length = 245

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 11/199 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++      +VFD+ETTGL    D IIEIGA++++     +R F  F+ P+ +K + +  
Sbjct: 1   MVKD----YVVFDLETTGLSPDKDTIIEIGALKVIQGKVADR-FSEFINPH-QKLTQQIS 54

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GITD+ L    +   +  +F DF  +     + HN  FD  F     ++ +      
Sbjct: 55  ELTGITDDMLAGARNLQVVVGDFVDFCED--YVVVGHNLGFDYRFTKMAAEKYHLPFEHE 112

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                 ++    K       L +LC+ YG  I + S H A  D+   + +Y  +      
Sbjct: 113 GIDTLKIAKTVHKD-LPSRSLGALCEHYG--IINSSAHRAYHDALATAKLYQTLAHYFET 169

Query: 181 INFGFKTNEDRFFKEEKKT 199
                   E   FK +K+ 
Sbjct: 170 SEPKLFVPEKMGFKAKKQQ 188


>gi|256849838|ref|ZP_05555269.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|256713327|gb|EEU28317.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
          Length = 1436

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH---HPLSEQTINLTSIT 474

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R     +    +     
Sbjct: 475 DEMVGAADDEAVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTLEV 534

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   SR+ L+SL K+Y +++ H   H A  D+     +  K++   ++       N
Sbjct: 535 SRLLHPEQSRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMFKLLDAFNKKYHENNLN 592

Query: 189 EDRFFKEEKKTVPNISLL 206
               +    +        
Sbjct: 593 NLNGYAAHGEVYKRARPS 610


>gi|227878821|ref|ZP_03996728.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|227861569|gb|EEJ69181.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
          Length = 1436

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH---HPLSEQTINLTSIT 474

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R     +    +     
Sbjct: 475 DEMVGAADDEAVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTLEV 534

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   SR+ L+SL K+Y +++ H   H A  D+     +  K++   ++       N
Sbjct: 535 SRLLHPEQSRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMFKLLDAFNKKYHENNLN 592

Query: 189 EDRFFKEEKKTVPNISLL 206
               +    +        
Sbjct: 593 NLNGYAAHGEVYKRARPS 610


>gi|295396947|ref|ZP_06807069.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
 gi|294974800|gb|EFG50505.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
          Length = 1439

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 5/197 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++ + +    TF+ F+ P GR  S   + L GITD 
Sbjct: 423 YVVFDVETTGLSAIYDNIIELAAVKMQNGNVI-DTFEEFINP-GRPLSATIIDLTGITDA 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +  +   + S+F ++  +  A ++AHNA FD+GFI+    R   +    + I     
Sbjct: 481 MLANTRTEKEVISDFREWVGD--AIFVAHNASFDMGFIDTAYNRHGFEKSHNAVIDTLEM 538

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKH-GALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                     + LN+L KRY + +    +       +  L+ ++IK      +I +  + 
Sbjct: 539 SRFLHPNLKSHRLNTLAKRYNVALEQHHRAVYDAETTGALAWIFIKEAAADHEIFYHDEL 598

Query: 188 NEDRFFKEEKKTVPNIS 204
           N+D    +  K      
Sbjct: 599 NKDVGKGDAYKQGRPFH 615


>gi|323342031|ref|ZP_08082264.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464456|gb|EFY09649.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 1433

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 91/235 (38%), Gaps = 17/235 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL +  D IIE G V + +     +  Q F+        P   +L  ITD 
Sbjct: 385 YVSFDLETTGLSNYYDHIIEFGGVLIENGRVVKKM-QTFIK-APVPVRPFIQELTNITDA 442

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L + PS      E  +F  +     +AHNA+FD+ FI   L+RI K+P+  + I     
Sbjct: 443 DLVNAPSIEEAMDEILEFLGD--HVLVAHNAQFDIDFIQETLRRIGKEPIQNAVIDTLDL 500

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L S+ +   I       H A  D+ +LS V+++M+           T 
Sbjct: 501 SRALFDNRRSYRLGSIARFMRIGYDEGVAHRADYDAEVLSLVFLEMLRLEQ-----LSTM 555

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD--------EHDKTIQTLGKNA 235
           +     +      +   L++        T+  +          H K +   GK +
Sbjct: 556 QTIDDLQSLNNESSFKKLRKSHCTVIAKTQSSIKDLYQLITLSHTKYLAFFGKTS 610


>gi|294140713|ref|YP_003556691.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12]
 gi|293327182|dbj|BAJ01913.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12]
          Length = 206

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 72/196 (36%), Gaps = 13/196 (6%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I+ D ETTGL   + DR IEIGAV + D      TFQ  + P  R +             
Sbjct: 10  IILDFETTGLSPNQGDRAIEIGAVRIQDGIVV-DTFQELMNPGFRVSGFIEGYTGISNAM 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P    +           +   +AHNA FD  F++   +    +     +   ++ 
Sbjct: 69  LANAAPCEEVMARFAD---FIGDHNLVAHNASFDQRFLD--AELDGINLSYGGKFACSML 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ------IN 182
           IARR +  + N        Y    +    H AL DS + + ++++M+            +
Sbjct: 124 IARRLYQDAPNHKLGGLVEYKQIENDGVFHRALADSEMTAKLWLQMLDDMRSEHGITAPS 183

Query: 183 FGFKTNEDRFFKEEKK 198
           F    +  R  K +  
Sbjct: 184 FTLMQDLSRKPKAQVN 199


>gi|218289182|ref|ZP_03493418.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
          acidocaldarius LAA1]
 gi|218240765|gb|EED07944.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
          acidocaldarius LAA1]
          Length = 952

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          M  I+ D ETTGL+ +   I+EIGA+ +        TF   + P  R    E  +L G++
Sbjct: 1  MEWIIVDFETTGLEPERAEILEIGALRVRGGEIV-DTFHTLVRPE-RPIPDEITRLTGLS 58

Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97
          D  +   PS       F  F  +        
Sbjct: 59 DTDVAGAPSEREALMRFATFAGDTPMAGHHW 89


>gi|262046916|ref|ZP_06019876.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
 gi|260572898|gb|EEX29458.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
          Length = 1436

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH---HPLSEQTINLTSIT 474

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R     +    +     
Sbjct: 475 DEMVGAADDEAVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTLEV 534

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   SR+ L+SL K+Y +++ H   H A  D+     +  K++   ++       N
Sbjct: 535 SRLLHPEQSRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMFKLLDAFNKKYHENNLN 592

Query: 189 EDRFFKEEKKTVPNISLL 206
               +    +        
Sbjct: 593 NLNGYAAHGEVYKRARPS 610


>gi|238854632|ref|ZP_04644962.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 269-3]
 gi|260664425|ref|ZP_05865277.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US]
 gi|282932977|ref|ZP_06338374.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 208-1]
 gi|238832422|gb|EEQ24729.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 269-3]
 gi|260561490|gb|EEX27462.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US]
 gi|281303012|gb|EFA95217.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 208-1]
          Length = 936

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 68/222 (30%), Gaps = 4/222 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     DRII+ G   + +     +T+   + P           L GI   
Sbjct: 10  FAVVDLETTGTRRGQDRIIQFGCAIIKNRQII-KTYSFLINPE-ADIPQAVQNLTGIKPT 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++P F    ++  D   +        N                K        ++   
Sbjct: 68  DVINQPVFKKYAAQIEDILQDTVFVAHNINFDLPFLNAELAANSFPKLHNRAIDTVELSK 127

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           IA    PS R    +       T  H++   A   + LL  ++ K+            + 
Sbjct: 128 IAFPTLPSYRLSDLTHSLNLKHTNPHQADSDAYATASLLLKIFDKLETLPQSTLNTLTSL 187

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
                ++ +     IS   R +     + K+    H   ++ 
Sbjct: 188 SKGLLRDTQFIFKEISEFTRQEKRP--LPKKYRQVHSLVLKK 227


>gi|257082037|ref|ZP_05576398.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|256990067|gb|EEU77369.1| DNA polymerase III [Enterococcus faecalis E1Sol]
          Length = 929

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSAF 201


>gi|291320001|ref|YP_003515259.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae]
 gi|290752330|emb|CBH40301.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae]
          Length = 1459

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 2/188 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FDIETTGL  K   IIE GAV++    K  +  Q F+ P  +  +            
Sbjct: 425 YVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGKVTQFFIKPQAKIGAFTTELTGITQQM 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              +  S        +D  +      IAHNAKFD  F+  + +  N    + + I   ++
Sbjct: 485 LDSEGLSIKDGLQRIYDCLDG--KVAIAHNAKFDFNFLKEQFRLNNVPFPNVTVIDTLIA 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R+ L  +  R G+       H    D+ +L++V++ ++   +  N     +
Sbjct: 543 SRIGFPNYKRHKLEDVASRLGVVYDPNVAHRGDYDAKVLANVWVNIISELNSKNIFTFED 602

Query: 189 EDRFFKEE 196
              F   +
Sbjct: 603 LGNFTSND 610


>gi|226312093|ref|YP_002771987.1| ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
 gi|226095041|dbj|BAH43483.1| probable ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
          Length = 967

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 7/177 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG   +  D II+IGAV + D   T  +F   + P G+   P   +L GIT
Sbjct: 3   RLLVVDFETTGSHPRQGDSIIQIGAVAIDDGQIT-ESFSTLIHP-GQDIPPFITQLTGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E + D PS   +F +F    +     ++AHNA FD+ F+   L        D   +   
Sbjct: 61  NEMVADAPSLEEVFPDFLRLLDG--RAFVAHNASFDLQFLQEALLSQGYYAFDGYVLDTV 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     +   L  L     I     + H A  D+   + +++ ++    ++  
Sbjct: 119 ELSRVLLPMQNSYRLGELASELEIEH--DNPHQADSDALATAQLFLHLLDILKKLPL 173


>gi|218961823|ref|YP_001741598.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease
           (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730480|emb|CAO81392.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease
           (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 960

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 6/168 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIETTGL+S+ D II+I  +           F   + P G+        L  I+ +
Sbjct: 24  FVAIDIETTGLNSEWDEIIQIAGMRFKGEEVV-NQFVSLVKPKGK-VPKFIEHLTHISPQ 81

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK  P    +  +F +F  +  +  + HN  FD  F+N  +      P+          
Sbjct: 82  ELKTAPPIKEVLKDFCNFIGD--SILVGHNIGFDFNFLNQFIVDNGGFPISNMHWDTAEI 139

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  ++ + L++L   +GI +   + H A  D+     ++  +  
Sbjct: 140 GRIYLPFTTDHKLSTLVSFFGIELM--NAHQADADALATGKLFNALTN 185


>gi|315150174|gb|EFT94190.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0012]
          Length = 929

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSAF 201


>gi|224540943|ref|ZP_03681482.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526094|gb|EEF95199.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM
           15897]
          Length = 1444

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 4/195 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++ N +  + FD+ETTGL   +D I EIGAV++ +  +  R  Q F+  + +  S +  +
Sbjct: 397 LKLNDLTYVSFDLETTGLSQIDDYITEIGAVKIKNGLEVGR-LQTFIK-SPKPISKKITE 454

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  IT+E +++ P+         +FF +     IAHN +FD+G ++  L+R+ K P+   
Sbjct: 455 LTSITNEDIRNAPTIEEFMPRLMEFFGD--DLLIAHNGRFDIGMLDKALERMGKSPISNP 512

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            I       R         L ++C+ Y I     + H A  D+ +LS  +  M+    + 
Sbjct: 513 WIDTLPLSRRLIPLQRSYRLGAVCRFYHIPYDTEAAHRADYDAEVLSHSFNVMLQDLIKK 572

Query: 182 NFGFKTNEDRFFKEE 196
            F      +    EE
Sbjct: 573 GFKTIDEVNDIEIEE 587


>gi|329667117|gb|AEB93065.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii DPC 6026]
          Length = 1432

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 9/215 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH---HPLSDTTINLTSIT 470

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R   + +    +     
Sbjct: 471 DEMVGVADDEKDVIKKFKEFYGDRPLCGHNVQFDVGFVNAALRRAGLEEITQPVVDTLEV 530

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++   ++    F   
Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFNER---FHEA 585

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           +     +  K        K        + +E L  
Sbjct: 586 DLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKN 620


>gi|256843343|ref|ZP_05548831.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|293381212|ref|ZP_06627220.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus crispatus 214-1]
 gi|256614763|gb|EEU19964.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|290922252|gb|EFD99246.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus crispatus 214-1]
          Length = 1436

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH---HPLSEQTINLTSIT 474

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R     +    +     
Sbjct: 475 DEMVGAADDEAVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTLEV 534

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   SR+ L+SL K+Y +++ H   H A  D+     +  K++   ++       N
Sbjct: 535 SRLLHPEQSRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMFKLLDAFNKKYHENNLN 592

Query: 189 EDRFFKEEKKTVPNISLL 206
               +    +        
Sbjct: 593 NLNGYAAHGEVYKRARPS 610


>gi|323489712|ref|ZP_08094939.1| ATP-dependent helicase dinG [Planococcus donghaensis MPA1U2]
 gi|323396843|gb|EGA89662.1| ATP-dependent helicase dinG [Planococcus donghaensis MPA1U2]
          Length = 920

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 18/218 (8%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N  + +V DIETTG    K DRII++  V + +   T  T+  F+ P GR        L 
Sbjct: 2   NTQKYVVVDIETTGHSPAKGDRIIQLAMVTIENGEIT-DTYTEFINP-GRTIPLFIQDLT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            ITD  + +  +F       ++   +  A ++AHN  FD+ F+ AEL+R          +
Sbjct: 60  NITDADVAEAKAFEHYAQTVYEKMQD--AIFVAHNTNFDLPFLQAELKRSGLPKWQGLTM 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--------- 174
                +      +    L  +    GI     S H A  D+   + ++++          
Sbjct: 118 DTVELVRLMYPTAFSFKLQDITSELGIP--LESAHRADDDAMATALLFLRAKEDLASLPY 175

Query: 175 --MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
             +    + +F  K++  R F E  +   N      D+
Sbjct: 176 ATLAFLHKRSFQLKSDLSRLFFELTQKKRNAQADDFDR 213


>gi|295693139|ref|YP_003601749.1| DNA polymerase iii, alpha subunit [Lactobacillus crispatus ST1]
 gi|295031245|emb|CBL50724.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus ST1]
          Length = 1436

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH---HPLSEQTINLTSIT 474

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R     +    +     
Sbjct: 475 DEMVGAADDEAVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTLEV 534

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   SR+ L+SL K+Y +++ H   H A  D+     +  K++   ++       N
Sbjct: 535 SRLLHPEQSRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMFKLLDAFNKKYHENNLN 592

Query: 189 EDRFFKEEKKTVPNISLL 206
               +    +        
Sbjct: 593 NLNGYAAHGEVYKRARPS 610


>gi|149188690|ref|ZP_01866982.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Vibrio
           shilonii AK1]
 gi|148837600|gb|EDL54545.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Vibrio
           shilonii AK1]
          Length = 207

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 5/106 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M+  +    +V D ETTGL   + DR IEIGAV+L + +  +R FQ  + P G + S   
Sbjct: 1   MMLSSAKSVVVLDFETTGLSPNQGDRAIEIGAVKLENGTVVDR-FQSLMNP-GFRVSGFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
               GI++  L + PS   +  EF  F    N   +AHNA FD  F
Sbjct: 59  ENYTGISNAMLANAPSCKDVMGEFSTFIKNSN--LVAHNASFDKRF 102


>gi|71279381|ref|YP_267529.1| exonuclease [Colwellia psychrerythraea 34H]
 gi|71145121|gb|AAZ25594.1| exonuclease [Colwellia psychrerythraea 34H]
          Length = 203

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/172 (33%), Positives = 80/172 (46%), Gaps = 7/172 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I+ D ETTGL     DR IEIGAV+L +   T+R FQ  + P GR  S       GIT+ 
Sbjct: 7   IILDFETTGLSPDNGDRAIEIGAVKLENGVVTDR-FQELMYP-GRPVSHFIADYTGITNV 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L        +   F  F   QN   +AHNA FD  F+++EL+RI+    D       L 
Sbjct: 65  MLSKAAPCHEVMDRFSGFIQGQN--LVAHNASFDKRFLDSELKRISSGY-DGQFACSLLL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             R    +  + L +L    GI  +    H AL DS + + +++ M+    Q
Sbjct: 122 SRRLYQTAPNHKLGTLINYKGIASNGS-FHRALYDSEMTAKLWVAMLDDIQQ 172


>gi|297530567|ref|YP_003671842.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3]
 gi|297253819|gb|ADI27265.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3]
          Length = 1444

 Score = 74.2 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + IIE+ AV++ D    +R F +F  P G   S   ++L GITDE
Sbjct: 429 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMLFANP-GHPLSVTTMELTGITDE 486

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    + + F D     +A  +AHNA FD+GF+NA L R+ +  +    I     
Sbjct: 487 MVKDAPKPDEVLARFVD--WAGDATLVAHNASFDIGFLNAGLARMGRGKIANPVIDTLEL 544

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK++   I     H A+ D+     + ++++    +    F   
Sbjct: 545 ARFLYPDLKNHRLNTLCKKF--DIELTQHHRAIYDAEATGHLLMRLLKEAEERGILFHDE 602

Query: 189 EDRFFKEEKK 198
            +     E  
Sbjct: 603 LNSRTHSEAS 612


>gi|253573562|ref|ZP_04850905.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251847090|gb|EES75095.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 1438

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 103/242 (42%), Gaps = 28/242 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL    ++IIEI AV++ +  + +R +  F+ P+ R       +L  I D+
Sbjct: 421 YVVFDIETTGLSVTQNKIIEIAAVKMREGKEIDR-YATFVNPHER-IPYHIQQLTNINDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +   F +    ++A  +AHNA+FD  F+NA+L+ +    ++   +     
Sbjct: 479 MVKDAPDVEPVLKRFVE--FAEDAILVAHNARFDYDFVNAKLKELGLPIMENPVLDTLEL 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L  +Y ++    + H A+ D+  L ++   ++     +       
Sbjct: 537 ARMLFPTMKNHRLNTLAAKYKVS--LENHHRAIDDTVALGEILNGLLDDA--VKIEGYKT 592

Query: 189 EDRFFKEEKKTVPNISLL-----------KRDKPLFTRITKEELDEHDKTIQT---LGKN 234
            DR   +  K + N               K++      ++      H +  +    + K+
Sbjct: 593 LDRLNDKVGKDLSNARPFHCGIYALNPVGKKNLFKLISLS------HTEYFKRVPCIPKS 646

Query: 235 AI 236
            +
Sbjct: 647 KL 648


>gi|118443832|ref|YP_878213.1| DNA polymerase III PolC [Clostridium novyi NT]
 gi|118134288|gb|ABK61332.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           novyi NT]
          Length = 1444

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 85/193 (44%), Gaps = 7/193 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  S+ D+IIE GAV++ + +    +F  F+ P  +    +  +L  IT++
Sbjct: 431 FVVFDLETTGFSSQYDKIIEFGAVKIKNGNII-DSFSAFVNPEIK-IPYKITELTSITND 488

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD  +   +  +F      +    +AHN+ FD+ FI    + +N +          L+
Sbjct: 489 DVKDAETIDKVLPKFIK--FAEGTVLVAHNSNFDMSFIRKNCKDLNIECNYTVMDTIPLA 546

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R  LN++ K  G++    + H A+ D+    D+ +       ++N  +  +
Sbjct: 547 -KFLFPELKRYKLNTIAKHLGVS--LENHHRAVDDAKATGDILVHCFKLLKEMNITYLDD 603

Query: 189 EDRFFKEEKKTVP 201
            +  F        
Sbjct: 604 LNNKFLGNIDVKK 616


>gi|312899802|ref|ZP_07759121.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0470]
 gi|311293052|gb|EFQ71608.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0470]
 gi|315146017|gb|EFT90033.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2141]
          Length = 929

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSAF 201


>gi|227553912|ref|ZP_03983959.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis HH22]
 gi|227176898|gb|EEI57870.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis HH22]
          Length = 929

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSAF 201


>gi|255975219|ref|ZP_05425805.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|307285838|ref|ZP_07565972.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0860]
 gi|255968091|gb|EET98713.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|306502599|gb|EFM71866.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0860]
          Length = 929

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSAF 201


>gi|237737108|ref|ZP_04567589.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC
           9817]
 gi|229420970|gb|EEO36017.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC
           9817]
          Length = 1450

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 6/176 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             IVFD+ET GL+S    IIEIGAV+L      +R F   + P  +    +  +L  IT 
Sbjct: 423 NFIVFDLETMGLNSHEHEIIEIGAVKLRGNRIVDR-FSQLVNPQ-KPIPKKIQELTNITQ 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + + P+   +  +F +F  +      AHNA FD+GFI  +++R+      P+ I    
Sbjct: 481 EMVDNMPTIEEVLPKFMEFVGDATMV--AHNAAFDMGFIRRDVKRLLGYDYTPAIIDTLQ 538

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                        L +L K  G++    S H A+ DS   ++++I  M    +   
Sbjct: 539 MARDLYPDLKGYGLKNLNKVLGLS--LESHHRAVDDSQATANMFIIFMERYLEKGI 592


>gi|229012784|ref|ZP_04169953.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048]
 gi|228748465|gb|EEL98321.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048]
          Length = 318

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P           L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPEL-SIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +       + I     
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNNVIDTVFL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +    +  + L +L +  GI +S  +     +    +  
Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169


>gi|269219439|ref|ZP_06163293.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269211135|gb|EEZ77475.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 589

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 59/175 (33%), Gaps = 3/175 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG     + I EIGAV++         F   + P G+        L GIT  
Sbjct: 44  FVVVDLETTGAKPGPESITEIGAVKVRGGETVGE-FSTLVNP-GQPIPAFITSLTGITTA 101

Query: 69  FLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                P  +++     +F     +    AHNA+FDVG + A     +        +    
Sbjct: 102 MTARAPRIAAVIPSLIEFLCAGPSTVVAAHNARFDVGHLKAAFAGADFTWPSVRVLDTVA 161

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
              R        +            +    H AL D+    DV   M+     + 
Sbjct: 162 LARRAFSSDEVPNFKLSTLAGACGATTAPNHRALDDARATVDVLHAMLGRLGPLG 216


>gi|256617168|ref|ZP_05474014.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|307277210|ref|ZP_07558314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2134]
 gi|256596695|gb|EEU15871.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|295113409|emb|CBL32046.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus sp. 7L76]
 gi|306506140|gb|EFM75306.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2134]
          Length = 929

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSAF 201


>gi|29376872|ref|NP_816026.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Enterococcus faecalis V583]
 gi|227519901|ref|ZP_03949950.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis TX0104]
 gi|29344337|gb|AAO82096.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Enterococcus faecalis V583]
 gi|227072695|gb|EEI10658.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis TX0104]
 gi|315574388|gb|EFU86579.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0309B]
 gi|315580138|gb|EFU92329.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0309A]
          Length = 929

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSAF 201


>gi|257084662|ref|ZP_05579023.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|256992692|gb|EEU79994.1| DNA polymerase III [Enterococcus faecalis Fly1]
          Length = 929

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QAVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSAF 201


>gi|254505589|ref|ZP_05117736.1| DNA polymerase III PolC-type [Vibrio parahaemolyticus 16]
 gi|219551706|gb|EED28684.1| DNA polymerase III PolC-type [Vibrio parahaemolyticus 16]
          Length = 204

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 9/177 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV+L++      TFQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPNMGDRAIEIGAVKLVNGEVV-DTFQQLMNP-GFRVSSFIEGYTGITNV 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L+D PS   + ++F  F   +N   +AHNA FD  F++ EL+R+N     + +  +   
Sbjct: 66  MLRDAPSCDEVMAQFAQFIAGEN--LVAHNASFDKRFLDDELERVNAAYSGEFACSLLVS 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
               +  PS +       K+     +    H AL D+ + + +++ M+         
Sbjct: 124 RRLNQDAPSHKLGDLVRFKQI---DNDGVFHRALADAEMTAKLWMLMVNDLQSRGIS 177


>gi|42519364|ref|NP_965294.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
 gi|41583652|gb|AAS09260.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
          Length = 1432

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 9/215 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH---HPLSDTTINLTSIT 470

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R   + +    +     
Sbjct: 471 DEMVGAADDEKDVIKKFKEFYGDRPLCGHNVQFDVGFVNAALRRAGLEEITQPVVDTLEV 530

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++   ++    F   
Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFNER---FHEA 585

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           +     +  K        K        + +E L  
Sbjct: 586 DLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKN 620


>gi|300784117|ref|YP_003764408.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
 gi|299793631|gb|ADJ44006.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
          Length = 567

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 61/174 (35%), Gaps = 4/174 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG       I EIGAV++         F   + P G    P+ + L GIT  
Sbjct: 22  FVVFDLETTGAPPGPSGITEIGAVKVRGGEVLGE-FATLVNP-GAPIPPQIVSLTGITQA 79

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P    +   F +F     A  +AHN+ FD   + A  +         + +     
Sbjct: 80  MVYDAPPIEEVLPAFLEFIGG--AVLVAHNSGFDTSHMRAACEGHGYVWPKATVVCTVRL 137

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
             R          N            R  H AL D+    DV   ++     + 
Sbjct: 138 ARRVVPRDEVGRYNLTALALLFGARTRPTHRALDDARATVDVLHGLLERVGNLG 191


>gi|257421980|ref|ZP_05598970.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
 gi|257163804|gb|EEU93764.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
 gi|315155308|gb|EFT99324.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0043]
          Length = 929

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSAF 201


>gi|68535768|ref|YP_250473.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411]
 gi|68263367|emb|CAI36855.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411]
          Length = 222

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 4/98 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTG + + DRIIEI AV    +     ++   L P+G+    +   +HGIT++
Sbjct: 21  FAVIDTETTGFNKRYDRIIEIAAVRADAHFNPVDSWHTLLNPDGKAI--KNSHIHGITND 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
            +   P+FS ++ +F  + +  +    AHNA FD   I
Sbjct: 79  MVATAPTFSEVYGDFTSYIDGMH--LFAHNAPFDSKMI 114


>gi|213965283|ref|ZP_03393480.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
           SK46]
 gi|213952135|gb|EEB63520.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
           SK46]
          Length = 529

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 4/169 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGL +KND IIEIGA++         TF  F+ P G +       L GIT  
Sbjct: 23  FVVVDLETTGLKAKNDHIIEIGAIKTRGGKTIG-TFSSFIDP-GMEIPDHITSLTGITTA 80

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P   ++ ++F +    + + W+AHNAKFD+GF+      +  D   PS +     
Sbjct: 81  DVETAPQLGTVITQFLE--FARGSVWVAHNAKFDIGFLRQACTDLGLDWPSPSVVDTLTL 138

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             R    S             +   +R  H AL D+    DV   +M  
Sbjct: 139 ARRVLDRSQVGSFKLSQLARYVGSPNRPAHRALDDAIATVDVLHYLMER 187


>gi|148377333|ref|YP_001256209.1| DNA polymerase III PolC [Mycoplasma agalactiae PG2]
 gi|148291379|emb|CAL58763.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae PG2]
          Length = 1459

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 2/188 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FDIETTGL  K   IIE GAV++    K     Q F+ P  +  +            
Sbjct: 425 YVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGEVTQFFIKPQAKIGAFTTELTGITQQM 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              +  S        +D  +      IAHNAKFD  F+  + +  N    + + I   ++
Sbjct: 485 LDSEGLSIKDGLQRIYDCLDG--KVAIAHNAKFDFNFLKEQFRLNNVPFPNVTVIDTLIA 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R+ L  +  R G+       H    D+ +L++V++ ++   +  N     +
Sbjct: 543 SRIGFPNYKRHKLEDVTSRLGVVYDPNVAHRGDYDAKVLANVWVNIISELNSKNIFTFED 602

Query: 189 EDRFFKEE 196
              F   +
Sbjct: 603 LGNFTSND 610


>gi|325661635|ref|ZP_08150259.1| hypothetical protein HMPREF0490_00993 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472162|gb|EGC75376.1| hypothetical protein HMPREF0490_00993 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 238

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 69/223 (30%), Gaps = 8/223 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI+      + FD+ETTGL  + D IIEIGAV++ D   T+R F  FL P    +     
Sbjct: 1   MIKT----YVAFDLETTGLSEERDSIIEIGAVKVTDGKVTDR-FMEFLKPAEEISPMITQ 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                 +     + +   I               + HN  FD  F+     +        
Sbjct: 56  ITGITNEMVAHARNTKEVIDDFMG---FCGEEVLLGHNILFDYKFMKRYACKYQHSFERR 112

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                 ++    K   SR+             +    +   L +  L             
Sbjct: 113 GIDTLKIARKVHKDLESRSLEALCVHYQIKNDAAHRAYHDALATAKLYHCLGHYFEEKEP 172

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
             F  +    +  KE+  T      L++          E+L+ 
Sbjct: 173 NLFVPEPLFYQPRKEQPATEKQKRYLEKLCGWHRIAVPEDLEA 215


>gi|227890229|ref|ZP_04008034.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849231|gb|EEJ59317.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 1432

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 9/215 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH---HPLSDTTINLTSIT 470

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R   + +    +     
Sbjct: 471 DEMVGAADDEKDVIKKFKEFYGDRPLCGHNVQFDVGFVNAALRRAGLEEITQPVVDTLEV 530

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++   ++    F   
Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFNER---FHEA 585

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           +     +  K        K        + +E L  
Sbjct: 586 DLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKN 620


>gi|289423581|ref|ZP_06425382.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
 gi|289156083|gb|EFD04747.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
          Length = 174

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 7/166 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            IV D+ETTGLD  +   IIEIG  E+     T   +   + P G   S     L  I++
Sbjct: 10  YIVVDLETTGLDPLQGHEIIEIGVTEIKKGDITLN-YSRLIKPKGI-ISSFITNLTHISN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++ + +   +  +F ++  +  +  IAHNAKFD+ F+N  L+++  +P+        +
Sbjct: 68  EMVEGEKTLEEVLPKFREYIGD--SVLIAHNAKFDIPFLNYYLEKMGLEPIKNYICTLEM 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               + +P  +  L++ C  YGI   +   H A  D+H  + +++K
Sbjct: 126 LKMNKMYPLKKKSLSAACDFYGIK--NVEAHRAYADTHATALLFLK 169


>gi|268319259|ref|YP_003292915.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785]
 gi|262397634|emb|CAX66648.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785]
          Length = 1432

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 9/215 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH---HPLSDTTINLTSIT 470

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R   + +    +     
Sbjct: 471 DEMVGAADDEKDVIKKFKEFYGDRPLCGHNVQFDVGFVNAALRRAGLEEITQPVVDTLEV 530

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++   ++    F   
Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFNER---FHEA 585

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           +     +  K        K        + +E L  
Sbjct: 586 DLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKN 620


>gi|185178976|ref|ZP_02964733.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|225551037|ref|ZP_03771983.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
 gi|184209258|gb|EDU06301.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|225378852|gb|EEH01217.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
          Length = 1442

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 4/205 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL    D IIE GA+ + +  +     Q F+ P  ++ +     L  I  E
Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNLTNINQE 467

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D     +   +  + F   N   +AHN          +           +  IDTL 
Sbjct: 468 MVNDAIDEKTALLKIKEIF--DNHILVAHNGISFDINFINQRLLKWGLKPLKNPSIDTLM 525

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M       +F     
Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIMKNSLVN-DFEIINL 584

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                K +   + N S         
Sbjct: 585 NQINTKLQSLMLKNRSFGNWVNLYI 609


>gi|315924481|ref|ZP_07920702.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622185|gb|EFV02145.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 1442

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 84/212 (39%), Gaps = 12/212 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL +  D IIEI AV++ +      TFQ F+ P+ R    +  +L  ITD+
Sbjct: 427 FVFFDLETTGLYAGRDAIIEIAAVKIKN-KHVLDTFQTFVNPH-RPIPQKITELTSITDQ 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +       +    F DF +       AHNA FD+GF++  L+R              ++
Sbjct: 485 MVAQGKEEEAAVRAFLDFCDG--KILAAHNASFDMGFMSIALERYGIPNTITYVDTLPMA 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  +  N            I     H A+ DS   + +++++M    + +     +
Sbjct: 543 RTLIPDIARHNL---KKLASYFKIDMGHHHRAIDDSICSAKIFVRLMGLAEKQHCDRAAD 599

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
            +R        +  I   +R   +      ++
Sbjct: 600 LNRLM-----RLEQIIKTERPYHVIIYAKDQD 626


>gi|51892650|ref|YP_075341.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
           14863]
 gi|51856339|dbj|BAD40497.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
           14863]
          Length = 1475

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 85/237 (35%), Gaps = 25/237 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG     D IIE+GAV          +FQ F+ P  +   PE  KL  IT +
Sbjct: 454 FVVLDIETTGFSPIGDDIIELGAVRCRGGEIV-DSFQSFVRP-TKPVPPEVQKLTNITPD 511

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P  +     F+ F  +  A  +AHNA+FD  F+    Q+   +      +     
Sbjct: 512 MLEGAPEAAEALRAFFQFVGD--AIVVAHNAQFDYSFLRYHRQKYLGEEFANPVLDTLTL 569

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS--QINFGFK 186
                     + L +L K   +       H A  D+   + V +K++      +      
Sbjct: 570 ARAVLPHMRSHSLAALTKELQVP--LVDHHRADADAKTAAMVLMKLLERAEGVETVADLN 627

Query: 187 TNEDRFFKEEKKTVPNISLLKRDK-----------------PLFTRITKEELDEHDK 226
                   E+ +      L+K                        R+ + EL++H +
Sbjct: 628 RLTKGINVEQLRPYHTTVLVKTQAGMKNLYKLISLSHIEYFNRTPRVPRSELEKHRE 684


>gi|288800441|ref|ZP_06405899.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332654|gb|EFC71134.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
          Length = 285

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 77/209 (36%), Gaps = 7/209 (3%)

Query: 2   IRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  R  +VFD+ETTGLD  NDRII+I  +++    K  R   +F+ P  +    E  
Sbjct: 1   MKLNLQRPLVVFDLETTGLDLVNDRIIQISYIKVHPDGKEERE-NLFINPQ-KPIPQEVE 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L  IT++ +KD P+F+ I  + ++ F   +      N            +         
Sbjct: 59  ALTHITNDMVKDAPTFAEIAQKLYEKFTGCDFAGFNSNHFDIPMLAEEFSRAGLSYDFSR 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           S+++D   I  +          +   ++           A          Y  +M    +
Sbjct: 119 SKLVDAQVIFHK----MERRNLAAAYKFYCGRKMEDDFNAHRADEDTEATYRVLMGQIER 174

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRD 209
            +   +   +R    +   +   S   R+
Sbjct: 175 YSAEQQEEAERILPNDIAALAEFSTNNRN 203


>gi|163782848|ref|ZP_02177844.1| DNA polymerase III epsilon subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881969|gb|EDP75477.1| DNA polymerase III epsilon subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 194

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 6/168 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG D  +  II+IGAV +     T  TF   + P G        +L GIT+ 
Sbjct: 10  FVAIDVETTGFDVNHAEIIDIGAVRVEGGIIT-ETFSSLVDP-GFFIPDRIKELTGITNA 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P    +   F DF  +  +  + H+   D+ FI+   +   +       I     
Sbjct: 68  MLVGSPKMIEVLPRFMDFIGD--SIIVGHHISQDIKFIDKYTRLYGEGKFRRPYICTLEL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             +      R+ L  +   +  ++ +   H AL D+ + + V+++++ 
Sbjct: 126 SRKLLPSLPRHSLKEMADYF--SVDYSRLHRALDDALITAQVFLELLN 171


>gi|119898701|ref|YP_933914.1| DNA polymerase III epsilon subunit-like protein [Azoarcus sp. BH72]
 gi|119671114|emb|CAL95027.1| DNA polymerase III epsilon chain-like protein [Azoarcus sp. BH72]
          Length = 734

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 8/166 (4%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGL+  + D II+IGAV +L+     +  F+  + P  R    E+ ++HGIT +
Sbjct: 546 VFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDP-CRPLPEESARVHGITAD 604

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  +P   ++   F       +   +AHNA FD+ F+    + +     D   +   L 
Sbjct: 605 MLAGQPVIEAVLPSFHA--FAADTVLVAHNAAFDMRFLQ-LKEDLTGLRFDQPVLDTLLL 661

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            A        + L ++ +R GIT     +H AL D+ + ++V++K+
Sbjct: 662 SAVIHPNQDSHRLEAIAERLGIT--VVGRHTALGDAMVTAEVFLKL 705


>gi|332143320|ref|YP_004429058.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327553342|gb|AEB00061.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 715

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 4/116 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG ++  +RI EIG V+L+   + +R FQ  L P  R+      +L GI+D+
Sbjct: 543 YVVVDIETTGGNNSYNRITEIGMVKLVGGKEVDR-FQTLLNPQ-RRIPSSITRLTGISDD 600

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            + D P F+ +          ++A ++AHN  FD GFI  E  R+ +    P    
Sbjct: 601 MVADAPLFAEVADHIAS--FTEDAVFVAHNVNFDYGFIKQEFARLEQSFRRPKMCT 654


>gi|160947401|ref|ZP_02094568.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
 gi|158446535|gb|EDP23530.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
          Length = 1431

 Score = 73.4 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 7/193 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL    + I EIGAV +         F   + P  ++ S E  ++ GIT+E
Sbjct: 417 FVVFDIETTGLSHLKNNITEIGAVRVESGKIV-DVFNGLVNPE-QEISQEITEITGITNE 474

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + DKP  S I  +F +    +NA ++AHNA+FD+ FI    +R+N +           +
Sbjct: 475 MVADKPLISEIMPKFLE--FSKNAVFVAHNAEFDISFIKTNCKRLNLEFNPTFIDTMGFA 532

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
            A   H    + LN+LCK  G+     + H A  D+   + + ++++    +    F  N
Sbjct: 533 RAILPH-LKNHKLNTLCKELGVN--LLNHHRASFDAEACAGILLELIKIVEKEGKVFDEN 589

Query: 189 EDRFFKEEKKTVP 201
            +    +      
Sbjct: 590 INNIETKWPVAKN 602


>gi|91789989|ref|YP_550941.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666]
 gi|91699214|gb|ABE46043.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666]
          Length = 729

 Score = 73.4 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 8/175 (4%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGL+    D II+IGA+ +++     N T    + P  R    E++ +HGIT++
Sbjct: 541 VFDTETTGLEPSAGDEIIQIGAIRIVNGRLLRNETIDQLIDPRRRLKP-ESIAIHGITED 599

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K +P+       F +F  +     +AHNA FD+ F+    +           +   L 
Sbjct: 600 MVKGQPTIEQALPAFHEFCED--TVLVAHNAAFDMRFLQ-LKEASTGIVFRQPVLDTLLL 656

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            A        + L ++  R GI +  R  H AL D+ +  ++++KM+   +Q N 
Sbjct: 657 SALLHPNQESHRLEAIAGRLGINVIGR--HTALGDAIVTGEIFLKMIPLLAQQNI 709


>gi|312978245|ref|ZP_07789989.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus
           crispatus CTV-05]
 gi|310894963|gb|EFQ44033.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus
           crispatus CTV-05]
          Length = 836

 Score = 73.4 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH---HPLSEQTINLTSIT 474

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R     +    +     
Sbjct: 475 DEMVGAADDEAVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTLEV 534

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   SR+ L+SL K+Y +++ H   H A  D+     +  K++   ++       N
Sbjct: 535 SRLLHPEQSRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMFKLLDAFNKKYHENNLN 592

Query: 189 EDRFFKEEKKTVPNISLL 206
               +    +        
Sbjct: 593 NLNGYAAHGEVYKRARPS 610


>gi|291456364|ref|ZP_06595754.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Bifidobacterium breve DSM 20213]
 gi|291381641|gb|EFE89159.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Bifidobacterium breve DSM 20213]
          Length = 235

 Score = 73.4 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 76/212 (35%), Gaps = 15/212 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG       I EIGAV +      ++ FQ  + P       +   L GITD 
Sbjct: 34  YVALDLETTGFYPNRCAITEIGAVRVRGGRVVDQ-FQQLINP-LCPIPRQITALTGITDA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            + D      +  +F  +  + N        + HN  FD+ F++   + I       +  
Sbjct: 92  MVADHDPIDGVLPQFISWLADSNAAAETEPIVGHNVSFDLRFLDYNTRHIAGCGFACADY 151

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                        S + L  L  R+GI      +H AL D+      +  M       ++
Sbjct: 152 DTMQISRALFPKQSHHRLADLIVRFGIA--DNEEHRALSDAIQTQQCFEWM------RHY 203

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
             + +E    + ++    N + +   + +  R
Sbjct: 204 VSEHHESSTIRWKQAPAKNSTEILHQQLVVQR 235


>gi|228992309|ref|ZP_04152240.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM
           12442]
 gi|228767334|gb|EEM15966.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM
           12442]
          Length = 315

 Score = 73.4 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 64/161 (39%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  NDRII++ AV   ++      F  F+ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDRIIQVAAVRYRNHEL-ADQFVSFVNPE-RFIPNRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F  E      AHNA FD+ F+ +  + +         I     
Sbjct: 68  RVSDAPTIQEVLPLFLAFLGEDTIV--AHNASFDMRFLKSNAKMLRLPEPKNIVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             R    +  + L +L +  GI +S  +     +    +  
Sbjct: 126 AKRYMKHARNHKLETLKRMLGIRLSSHNALDDCITCAAVYQ 166


>gi|171920237|ref|ZP_02690314.2| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 1 str. ATCC 27813]
 gi|171902634|gb|EDT48923.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 1 str. ATCC 27813]
          Length = 1442

 Score = 73.4 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 80/205 (39%), Gaps = 4/205 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL    D IIE GA+ + +  +     Q F+ P  ++ +     L  I+ E
Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNLTNISQE 467

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +     +   +  + F   N   +AHN          +           +  IDTL 
Sbjct: 468 MVNNAIDEKTALLKIKEIF--DNHILVAHNGINFDINFINQRLLKWGLEPLKNPSIDTLM 525

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I+R  +P   + L ++CK+Y +  +    H A  D+ +L+D +  M       +F     
Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADAFKIMKNSLVN-DFEIINL 584

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                K +   + N S         
Sbjct: 585 NQINTKLQSLMLKNRSFGNWVNLYI 609


>gi|257090540|ref|ZP_05584901.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
 gi|256999352|gb|EEU85872.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
 gi|315578691|gb|EFU90882.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0630]
          Length = 929

 Score = 73.4 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYDFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSTF 201


>gi|268316801|ref|YP_003290520.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252]
 gi|262334335|gb|ACY48132.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252]
          Length = 565

 Score = 73.4 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 85/213 (39%), Gaps = 9/213 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG     DRIIE+ AV +       R F   + P GR   P   +L GIT  
Sbjct: 8   FVVVDTETTGSGPA-DRIIELAAVRVQGGRIVER-FATLINP-GRSVPPFITRLTGITTA 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  +PS   +  +F DF  +     +AHN  FD   + AELQRI         +     
Sbjct: 65  MLVGRPSADEVLPDFLDFLGD--GVLVAHNLAFDRKMLEAELQRIGLAWPGNPALCTLRL 122

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG-SQINFGFKT 187
             R         L+ L + Y I     ++H AL D+   + V ++++     Q       
Sbjct: 123 ARRLLPGLPAKGLDGLIRFYQIP--VENRHRALGDAEATAHVLLRLLEEARRQYGIDTLE 180

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP-LFTRITKE 219
               F ++      N S L R +  L  R+ + 
Sbjct: 181 ALLTFQQQRYPQYKNASPLVRLRETLLPRLPEA 213


>gi|171920838|ref|ZP_02932008.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
 gi|171903036|gb|EDT49325.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
          Length = 1442

 Score = 73.4 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 4/205 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL    D IIE GA+ + +  +     Q F+ P  ++ +     L  I  E
Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNLTNINQE 467

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D     +   +  + F   N   +AHN          +           +  IDTL 
Sbjct: 468 MVNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLENPSIDTLM 525

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M       +F     
Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIMKNSLVN-DFEIINL 584

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                K +   + N S         
Sbjct: 585 NQINTKLQSLMLKNRSFGNWVNLYI 609


>gi|225550655|ref|ZP_03771604.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
 gi|225379809|gb|EEH02171.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
          Length = 1442

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 4/205 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL    D IIE GA+ + +  +     Q F+ P  ++ +     L  I  E
Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNLTNINQE 467

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D     +   +  + F   N   +AHN          +           +  IDTL 
Sbjct: 468 MVNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLENPSIDTLM 525

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M       +F     
Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIMKNSLVN-DFEIINL 584

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                K +   + N S         
Sbjct: 585 NQINTKLQSLMLKNRSFGNWVNLYI 609


>gi|77920206|ref|YP_358021.1| DNA polymerase III subunit [Pelobacter carbinolicus DSM 2380]
 gi|77546289|gb|ABA89851.1| DNA polymerase III subunit [Pelobacter carbinolicus DSM 2380]
          Length = 222

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 7/166 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+G+   + DR IEIGAV ++     +R FQ  + P  R  S       GI++ 
Sbjct: 20  VVLDFETSGMSPVQGDRAIEIGAVRIVGGQIADR-FQSLMNPGCR-ISSFIESFTGISNA 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P  + + + F DF  +  A  +AHNA FD  F++   +    D         +L 
Sbjct: 78  MVQAAPPATQVMAAFHDFIGD--APLVAHNASFDRRFLD--AELQRIDRCRRQEFACSLL 133

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +ARR +P S N   +    Y    +    H AL D+ + + ++++M
Sbjct: 134 VARRVYPDSPNHKLATLVSYKGLPTDGCFHRALADAEMTAHLWLRM 179


>gi|260906794|ref|ZP_05915116.1| hypothetical protein BlinB_15797 [Brevibacterium linens BL2]
          Length = 581

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 73/203 (35%), Gaps = 3/203 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG  +    I EIGAV+          FQ  + P     SP   +L GIT  
Sbjct: 31  FVIVDLETTGTTAGKSEITEIGAVKTRGGEVLGE-FQSLVKPEESVISPFVARLTGITHA 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D PS  S+   F +F     A  +AHNA FD+GFI +  ++++     P+ +     
Sbjct: 90  MVDDAPSIRSVLPSFLEFCVG--AVLVAHNAPFDIGFIRSACEKLDYHWPQPTVLDTVTL 147

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             R        +                 H AL D+    +V  +++             
Sbjct: 148 SRRVVSRDEVRNHKLSTLAAHFGTEVSPDHRALSDAKATGEVLHRVLERFGGYGITTLEE 207

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
                +         S L +  P
Sbjct: 208 LATVRQAGWAKRQAKSHLAKGVP 230


>gi|256375516|ref|YP_003099176.1| hypothetical protein Amir_1378 [Actinosynnema mirum DSM 43827]
 gi|255919819|gb|ACU35330.1| DNA polymerase III, epsilon subunit [Actinosynnema mirum DSM 43827]
          Length = 578

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 4/174 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  +  D I EIGAV++         F   + P  R   P+ + L GIT  
Sbjct: 31  FVVFDLETTGPRAAEDGITEIGAVKVRGGRVIGE-FGTLVDPE-RGIPPQIVALTGITQN 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  +S+   F +    + A  +AHN+ FDVGF+ A  +R       P  +     
Sbjct: 89  MVTGAPVLASVLPAFLE--FAEGAVLVAHNSGFDVGFMKAACERHGYAWPKPPVVCTVKL 146

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
             R                    +     H AL+D+    +V  +++     + 
Sbjct: 147 ARRVLSREEAPSCKLSALSALFGVPEAPNHRALVDARATVEVLHRLLERVGSVG 200


>gi|225018411|ref|ZP_03707603.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum
           DSM 5476]
 gi|224948829|gb|EEG30038.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum
           DSM 5476]
          Length = 1453

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 5/181 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD ETTGL+++ +R+ EIGAV L +   T   +  F+ P  +   P+  +L GITD 
Sbjct: 434 FVVFDTETTGLNAQTERLTEIGAVVLKNGEIT-EEYDEFVNPE-KPIPPKITELTGITDS 491

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+       F+     +    IAHNA FD+GF+ A   R              + 
Sbjct: 492 MVADAPTEKEALERFFA--FAKGRILIAHNANFDMGFLAAAAARHGLSCDFTYIDTLPIV 549

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                   +   D      + G    HR+   A +   + ++V  +++      +     
Sbjct: 550 RTLFPTLRNHKLDTVVKHLKLGDFNHHRACDDAKILGLVFAEVAKRLIQEKGVADIADIN 609

Query: 188 N 188
           N
Sbjct: 610 N 610


>gi|210612665|ref|ZP_03289413.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787]
 gi|210151467|gb|EEA82475.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787]
          Length = 234

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 11/174 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI+      +VFD+ETTGLD +ND IIEIGA+++ +   T+R F  FL P+    SP   
Sbjct: 1   MIKT----YVVFDLETTGLDVENDNIIEIGALKVREGKVTDR-FMEFLKPD-MPISPMIT 54

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            + GIT+E +K+     ++  +F +F  +     + HN  FD  F+     +  +     
Sbjct: 55  GITGITNEMVKNARDTKTVIRDFVNFCED--HILVGHNIMFDYKFMKKYASQYGESFEKK 112

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                 ++    K   S++            I + + H A  D+   + VY  M
Sbjct: 113 GIDTLKIARKVHKDLESKSLE---ALCEHYQIVNTAAHRAYHDALATAKVYHMM 163


>gi|209554353|ref|YP_002284813.1| DNA polymerase III PolC [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|209541854|gb|ACI60083.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
          Length = 1442

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 4/205 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL    D IIE GA+ + +  +     Q F+ P  ++ +     L  I  E
Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNLTNINQE 467

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D     +   +  + F   N   +AHN          +           +  IDTL 
Sbjct: 468 MVNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLENPSIDTLM 525

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M       +F     
Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIMKNSLVN-DFEIINL 584

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                K +   + N S         
Sbjct: 585 NQINTKLQSLMLKNRSFGNWVNLYI 609


>gi|195867849|ref|ZP_03079848.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|195660426|gb|EDX53684.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
          Length = 1442

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 4/205 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL    D IIE GA+ + +  +     Q F+ P  ++ +     L  I  E
Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNLTNINQE 467

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D     +   +  + F   N   +AHN          +           +  IDTL 
Sbjct: 468 MVNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLENPSIDTLM 525

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M       +F     
Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIMKNSLVN-DFEIINL 584

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                K +   + N S         
Sbjct: 585 NQINTKLQSLMLKNRSFGNWVNLYI 609


>gi|147677749|ref|YP_001211964.1| hypothetical protein PTH_1414 [Pelotomaculum thermopropionicum SI]
 gi|146273846|dbj|BAF59595.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 937

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI++     +V D+ETTGLD  +DRIIEIG V L D       +   + P GR    +  
Sbjct: 1   MIKE----IVVCDLETTGLDPLSDRIIEIGLVRLKDLKIV-DIYHTMVNP-GRPLPLKIK 54

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            L G+ D  L   P+FS +  +   F  +  A    HN +FD+GF
Sbjct: 55  NLTGLDDSDLASAPAFSGVREKVLGFIGD--APIAGHNIRFDMGF 97


>gi|56963828|ref|YP_175559.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus clausii KSM-K16]
 gi|56910071|dbj|BAD64598.1| ATP-dependent DNA helicase DinG [Bacillus clausii KSM-K16]
          Length = 942

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 93/217 (42%), Gaps = 12/217 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+ETTG    +  ++I+IGAV++   + T+R F  F+ P G    P   +L GITD
Sbjct: 5   FVVIDLETTGNSPDQGAKMIQIGAVKVEGCTITDR-FSTFVDP-GCSIPPFITELTGITD 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++  P F  I ++   F    +   +AHN  FD GF+ A+L+          +     
Sbjct: 63  KDVEGAPVFREIATDLLAFMEGSS--LVAHNVPFDKGFLEAQLETEGLRLPKCCQFDTVE 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                        L+ L       + H   H A  D+ + ++++IK++    ++      
Sbjct: 121 LSRVLLPTQESYKLSELSSSL--DMDHDRPHRADSDAEITAELFIKLLHKLERLPL---V 175

Query: 188 NEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELD 222
                 +  K    +  +L R   +  + ++ ++E +
Sbjct: 176 TLQSLEQVAKGLKSDWDVLTRPLIQKKWMKVDEDERE 212


>gi|217978759|ref|YP_002362906.1| DNA polymerase III subunit epsilon [Methylocella silvestris BL2]
 gi|217504135|gb|ACK51544.1| Exonuclease RNase T and DNA polymerase III [Methylocella silvestris
           BL2]
          Length = 222

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 4/168 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD ETTGLD + D II I AV++  +   T+  F+  + P  R  + EA+K+H + + 
Sbjct: 33  VAFDCETTGLDPRRDDIITIAAVKIRGNRILTSERFEAVIRPEAR-MNAEAIKVHRLREA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            ++       I  +F  F   +     ++  + +    ++   L     +PL     +  
Sbjct: 92  DVEAGKRIEKIMPQFLHFIGGRPLIGYYLEFDVRMIDKYLLGLLGIELPNPLIEVSNLYY 151

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                   P +  DL+       + +    +H A  D+ + + +YIK+
Sbjct: 152 ERKYGDAPPGATIDLSFAAILKDLDLPMLDQHDAFNDALMTAMIYIKL 199


>gi|291542732|emb|CBL15842.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus
           bromii L2-63]
          Length = 1452

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 5/203 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FDIETTGL +  D+I EIGAV++ +   T  TF  F  P       +  +L GITD+
Sbjct: 435 FICFDIETTGLSAARDKITEIGAVKVENGVIT-DTFSTFANPE-MPIPQKITQLTGITDD 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD PS S     F +     +   +AHNA FD  FI    + + ++    S     +S
Sbjct: 493 MVKDAPSQSEAVGAFLE--FAGDNVLVAHNAPFDTSFIAKACEDMGREYNYTSIDTVAIS 550

Query: 129 IARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            A      + + D  +   R G    HR+   A + + +  ++  ++             
Sbjct: 551 RAILTDIKNCKLDTVAKFLRLGDFNHHRATDDAEMLARIFINLCQRLTDDYGITKTNDIN 610

Query: 188 NEDRFFKEEKKTVPNISLLKRDK 210
            +      +K    +  +L ++K
Sbjct: 611 TKIAGGDFKKLPTYHQIILVKNK 633


>gi|313665237|ref|YP_004047108.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           leachii PG50]
 gi|312949309|gb|ADR23905.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           leachii PG50]
          Length = 1480

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 6/207 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++  KM  + FD+ETTGL  + D IIE GA+E    +   +   + + P  +       K
Sbjct: 428 LKDAKM--VFFDLETTGLSPELDEIIEFGAIEYNFKTGERKKIDILIKPKAKLKD-FTKK 484

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  I +E L++KP     F +      +  A  +AHNA FD  F++   Q++    L+ +
Sbjct: 485 LTNINEEMLENKPGIEVAFKQINQIIKD--AILVAHNANFDYTFLSHWSQKLGYGKLENT 542

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQ 180
            I               + L SL KR  I+      H    D+ +L+D+Y +M+     +
Sbjct: 543 IIDTLTISRIIYPELKSHRLGSLAKRVNISYDPSVAHRGDYDADILADIYERMLDETRKK 602

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLK 207
                 ++ D+          N    K
Sbjct: 603 TKITIDSDWDKINPLNNIDNLNYHKNK 629


>gi|153815178|ref|ZP_01967846.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756]
 gi|145847437|gb|EDK24355.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756]
          Length = 279

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 78/234 (33%), Gaps = 30/234 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++      I FD+ETTGLD  N+ IIEIGA+++ D   + R F  F+ P    +     
Sbjct: 35  MLKS----YIAFDLETTGLDPMNNEIIEIGALKVRDGKVSER-FMEFIKPQELISPAITG 89

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                 D     +P+ S I          +    I HN  FD  F      R        
Sbjct: 90  LTGISNDMVASARPARSVITDFID---FCEEDILIGHNIIFDYSFTKCTAAREGLPFEKM 146

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                 ++        S++            I +++ H A  D+   + +Y  +      
Sbjct: 147 GIDTLKIAKKVHPELESKSLS---ALCEHYKIENKAAHRAYFDALATAKLYQTL------ 197

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                      +F+ +       S L          T ++L      ++ L KN
Sbjct: 198 ---------SHYFEPDNPKTFKPSQLTYKIRKPQPATPKQLAL----LERLTKN 238


>gi|228998363|ref|ZP_04157954.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17]
 gi|228761284|gb|EEM10239.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17]
          Length = 315

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 63/161 (39%), Gaps = 4/161 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  NDRII++ AV   ++      F  F+ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDRIIQVAAVRYRNHEL-ADQFVSFVNPE-RFIPNRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F  E      AHNA FD+ F+ +    +         I     
Sbjct: 68  RVSDAPTIQEVLPLFLAFLGEDTIV--AHNASFDMRFLKSNANMLRLPEPKNIVIDTVFL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             R    +  + L +L +  GI +S  +     +    +  
Sbjct: 126 AKRYMKHAPNHKLETLKRMLGICLSSHNALDDCITCAAVYQ 166


>gi|238917782|ref|YP_002931299.1| DNA polymerase [Eubacterium eligens ATCC 27750]
 gi|238873142|gb|ACR72852.1| DNA polymerase [Eubacterium eligens ATCC 27750]
          Length = 233

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 4/98 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  DIETTGL+   DRIIE+G   + D   T + +   + P G   S    +L GI +
Sbjct: 4   RYVALDIETTGLNPAVDRIIEVGMARVEDGQITQK-YSTLVYP-GISVSERITELTGIHN 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           E L  KP    I  E  +F  +     + HN  FD  F
Sbjct: 62  EELTGKPRIEDIIGEITEFIGD--WPVLGHNVIFDFSF 97


>gi|209809036|ref|YP_002264574.1| exonuclease [Aliivibrio salmonicida LFI1238]
 gi|208010598|emb|CAQ80976.1| exonuclease [Aliivibrio salmonicida LFI1238]
          Length = 227

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   + DR IEIGAV+L +    +R FQ  + P G + S       GIT+ 
Sbjct: 31  VVLDFETTGLSPNQGDRAIEIGAVKLENGVIVDR-FQKLMNP-GFRVSSFIANYTGITNA 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            L      +++  EF DF    N   +AHNA FD  F
Sbjct: 89  MLMGADDCATVMHEFADFIQGCN--LVAHNASFDQRF 123


>gi|227501930|ref|ZP_03931979.1| possible exonuclease [Corynebacterium accolens ATCC 49725]
 gi|227077314|gb|EEI15277.1| possible exonuclease [Corynebacterium accolens ATCC 49725]
          Length = 1118

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 95/231 (41%), Gaps = 22/231 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D ETTG  S  DR+IEIG V L    +   T++  + P  R      +  H IT 
Sbjct: 6   RYAVVDFETTGFGS-TDRVIEIGVVLLDHNREVESTWETLVQPQ-RDIPNSFV--HRITP 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIIDT 126
             + D P F  +  EF++  N +     AHNA F+V F+  E   +     +  + ++DT
Sbjct: 62  TDVVDAPLFGEVAGEFFELLNGRTVV--AHNAPFEVRFLQREFSNLGVAWPNYGAWVVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
             + ++ +P     L    +  GIT  +   H AL D+   ++++ +++  G+       
Sbjct: 120 KRLFQQTYPGEGTTLEHALEVVGIT--NARPHSALADALATAELFAQLVSQGT------- 170

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD--KTIQTLGKNA 235
              D        T+P      R   L      E+L  H   + +  L   A
Sbjct: 171 ---DVVISSRAITLPPHEFPARGALLPRTALAEDLT-HKRGEWLARLADTA 217


>gi|212635482|ref|YP_002312007.1| DNA polymerase III [Shewanella piezotolerans WP3]
 gi|212556966|gb|ACJ29420.1| DNA polymerase III [Shewanella piezotolerans WP3]
          Length = 222

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 69/172 (40%), Gaps = 7/172 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL   + DR IEIGAV+L      +R FQ  + P  R +             
Sbjct: 25  IVLDFETTGLSPNQGDRAIEIGAVKLQHGIVVDR-FQELMNPGFRISGFIESYTGISNQM 83

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P    +   F DF  + N    AHNA FD  F++   +  +           ++ 
Sbjct: 84  LNNAAPC-EEVMERFADFIADYNMV--AHNASFDQRFLD--AELNSIGREYRGEFACSML 138

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           IARR +  + N        Y         H AL DS + +D+++ M+    +
Sbjct: 139 IARRLYQEAPNHKLGSLINYKQIKHDGVFHRALADSEMTADLWLVMLNDLKR 190


>gi|238852616|ref|ZP_04643026.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 202-4]
 gi|238834762|gb|EEQ26989.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 202-4]
          Length = 1432

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 82/215 (38%), Gaps = 9/215 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH---HPLSDTTINLTSIT 470

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R   D +    +     
Sbjct: 471 DEMVGAADDEKDVIKKFKDFYGDRPLCGHNVQFDVGFVNAALRRAGLDEISQPVVDTLEV 530

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++      N  F   
Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLL---DAFNARFHEA 585

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           +     +  K        K        + +E L  
Sbjct: 586 DLGKMNDYAKYGQVYKRAKPSHVSVLALNQEGLKN 620


>gi|225180860|ref|ZP_03734308.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT
           1]
 gi|225168341|gb|EEG77144.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT
           1]
          Length = 269

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 7/175 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGI 65
           R I+FD ETTG    + D II I AV + +     ++ F   + P+ R        L GI
Sbjct: 77  RYIIFDTETTGFYPYQGDEIINIAAVVIENGEIKEDQIFDELVNPH-RSIPQAVCDLTGI 135

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+ + DK    S+ S+F DF  +  +  +AHNA+FD+ F+N +L    +  +    I  
Sbjct: 136 TDDMVADKCGICSVLSDFLDFIGD--SVLVAHNAEFDLAFLNIKLNWYTQTEIYNPVIDT 193

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                        +DL++L + +   +  R +H AL DS + +++++  +    +
Sbjct: 194 YKLGRALYPQLLSHDLDTLIRHH--RVKERPRHTALGDSLMTAEIFLDYLKKLEK 246


>gi|332799219|ref|YP_004460718.1| DNA polymerase III subunit alpha [Tepidanaerobacter sp. Re1]
 gi|332696954|gb|AEE91411.1| DNA polymerase III, alpha subunit [Tepidanaerobacter sp. Re1]
          Length = 1422

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 7/197 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTGL   ND IIEIGAV++L+    +R F  F+ P  R      + L GIT++
Sbjct: 408 FVVVDIETTGLCFDNDEIIEIGAVKILNNEIIDR-FSSFIKPQ-RLIPTNIINLTGITND 465

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK       +   F +F  +    ++AHNA+FD GFI  E  ++     +       L+
Sbjct: 466 MLKTARPIEKVLPSFMEFLGD--GVFVAHNAEFDSGFIRREASKLGIPFKNNILDTLALA 523

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + L++L K   I +   S H A+ D+   + +  ++++  ++      + 
Sbjct: 524 -RIIFSKLKNHRLDTLAKELNIKM--GSHHRAIDDAKTAALILQELLIKVNEAGINNLSQ 580

Query: 189 EDRFFKEEKKTVPNISL 205
            +  +K +K      S 
Sbjct: 581 INDIYKLKKGATNLSSY 597


>gi|89902537|ref|YP_525008.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
 gi|89347274|gb|ABD71477.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
          Length = 722

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGL+  + D II+IGA  +++       +F+  + P+ R  S  ++++HGIT +
Sbjct: 534 VFDTETTGLNPAEGDEIIQIGAARIVNKKILRQESFEQLVNPD-RLISAASVQIHGITQD 592

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P    +   F      Q+   +AHNA FD+ F+  +          P      LS
Sbjct: 593 RVIGQPRIGEVLPAFHA--FAQDTVLVAHNAAFDMKFLQLKEAATGLAFHQPVLDTLLLS 650

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                +    + L ++ +R+ IT     +H AL D+ + ++V+++++   + +  
Sbjct: 651 AVVHPN-QESHRLEAIAERFNIT--VLGRHTALGDAMVTAEVWLRLIPLLNAMGI 702


>gi|332298225|ref|YP_004440147.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM
           12168]
 gi|332181328|gb|AEE17016.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM
           12168]
          Length = 186

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 6/168 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTGL  + +R+IEIGA+         R + + + P G+   P A  ++ ITD+ +
Sbjct: 25  AFDTETTGLKPEYERLIEIGAIRFDKNGIIAR-YDILINP-GKPIPPGASAINNITDDMV 82

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ P   S+  +F  F  +  +  +AHNA FD+ F+N EL+R   +PL  +         
Sbjct: 83  RNCPLIESVLPDFLTFVRD--SVLVAHNAGFDLSFVNKELERSGFNPLKNNAADTVHLAR 140

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            R      + L SL   +GI    R+ H A  D+ +  +V+++ +  G
Sbjct: 141 SRFPQLPNHKLQSLAAYFGID--VRNAHRAEDDARVCMEVFLRCLNAG 186


>gi|188524415|ref|ZP_03004436.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|198273773|ref|ZP_03206307.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|195659873|gb|EDX53253.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|198249528|gb|EDY74310.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
          Length = 1442

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 81/205 (39%), Gaps = 4/205 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL    D IIE GA+ + +  +     Q F+ P  ++ +     L  I+ E
Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNLTNISQE 467

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D     +   +  + F   N   +AHN          +           +  IDTL 
Sbjct: 468 MVNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLKNPSIDTLM 525

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M       +F     
Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIMKNSLVN-DFEIINL 584

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                K +   + N S         
Sbjct: 585 NQINTKLQSLMLKNRSFGNWVNLYI 609


>gi|269215783|ref|ZP_06159637.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122]
 gi|269130733|gb|EEZ61809.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122]
          Length = 291

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 5/166 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTGL+   D IIE+ A+ +    +T   FQ  +   G  +   A         
Sbjct: 128 YVVVDIETTGLNPNKDEIIELAAIRVRGGRET-DAFQCLVRCGGELSDAIAKLTGLSHSR 186

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +     +    F +F ++     +AHNA+FD+GFI +  + ++ D  D   +     
Sbjct: 187 LMAEGLILENALMNFLEFVSD--DLIVAHNAEFDIGFIQSACEELDWDDFDNDYLDTLAL 244

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             ++    S + L+SL +R  +   +R  H AL D  L   + +K+
Sbjct: 245 ARKKLPQISDHRLSSLAERLHLE--NRQPHRALSDCRLTHCLLVKL 288


>gi|317502363|ref|ZP_07960529.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089964|ref|ZP_08338855.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896236|gb|EFV18341.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403102|gb|EGG82665.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 245

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 78/234 (33%), Gaps = 30/234 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++      I FD+ETTGLD  N+ IIEIGA+++ D   + R F  F+ P    +     
Sbjct: 1   MLKS----YIAFDLETTGLDPMNNEIIEIGALKVRDGKVSER-FMEFIKPQELISPAITG 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                 D     +P+ S I          +    I HN  FD  F      R        
Sbjct: 56  LTGISNDMVASARPARSVITDFID---FCEEDILIGHNIIFDYSFTKCTAAREGLPFEKM 112

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                 ++        S++            I +++ H A  D+   + +Y  +      
Sbjct: 113 GIDTLKIAKKVHPELESKSLS---ALCEHYKIENKAAHRAYFDALATAKLYQTL------ 163

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                      +F+ +       S L          T ++L      ++ L KN
Sbjct: 164 ---------SHYFEPDNPKTFKPSQLTYKIRKPQPATPKQLAL----LERLTKN 204


>gi|298244280|ref|ZP_06968086.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297551761|gb|EFH85626.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 684

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 7/171 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGL    DR+IE+  V + +      TFQ  + P  R+  P  ++  GI+ E
Sbjct: 101 FVVVDTETTGLRPGPDRVIEVAGVRMRNGEIL-DTFQSLVHPE-RRIPPFIVRFTGISPE 158

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    I  +F  F     A  + HN  FDV F+    +        P   +DT+ 
Sbjct: 159 MLADAPKARDIMPDFLRFIEG--ATLVGHNLSFDVNFLT--HEAQLLGLPFPVEGLDTIL 214

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           ++RR  P  +     +  +Y + I   ++H AL D+ + +DV+ +++    
Sbjct: 215 LSRRLLPGLKRFKLDMVAQY-LQIQTHNRHRALGDAQVTADVFARLLERAK 264


>gi|188518224|ref|ZP_03003759.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188998138|gb|EDU67235.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
          Length = 1442

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 81/205 (39%), Gaps = 4/205 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL    D IIE GA+ + +  +     Q F+ P  ++ +     L  I+ E
Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNLTNISQE 467

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D     +   +  + F   N   +AHN          +           +  IDTL 
Sbjct: 468 MVNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLKNPSIDTLM 525

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M       +F     
Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIMKNSLVN-DFEIINL 584

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                K +   + N S         
Sbjct: 585 NQINTKLQSLMLKNRSFGNWVNLYI 609


>gi|15639630|ref|NP_219080.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025868|ref|YP_001933640.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
           pallidum SS14]
 gi|6014996|sp|O83649|DPO3E_TREPA RecName: Full=DNA polymerase III subunit epsilon
 gi|3322942|gb|AAC65617.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018443|gb|ACD71061.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060013|gb|ADD72748.1| DNA polymerase III subunit epsilon [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 215

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 79/172 (45%), Gaps = 4/172 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTGL ++ DRIIEIGAV         R F   + P+ R   P+  K++ ITD+ L
Sbjct: 17  AFDTETTGLKAEEDRIIEIGAVTFDRKGIIAR-FSTLIFPD-RAIPPDVSKINHITDDML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            +KP F  I S+F  F        +AHNA FDV F+NAEL    K PL    +       
Sbjct: 75  VNKPRFCEIVSDFSRFIKG--TVLVAHNANFDVEFLNAELSLCKKQPLSHKVVDTYAMAQ 132

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
                  R+            ++  + H A  D+ +  +++  M+   ++ N
Sbjct: 133 AVFPGLGRHQYRLQNLALQFGLTVHAAHRAEDDARVCMELFTTMIAHHAKQN 184


>gi|304373374|ref|YP_003856583.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
 gi|304309565|gb|ADM22045.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
          Length = 1457

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 76/206 (36%), Gaps = 3/206 (1%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFD+ETTGL  K + +IE GAV   +     +  +  + P  +   P  +       
Sbjct: 403 RYVVFDLETTGLSPKFNELIEFGAVVWQNGQILEKH-EFLIKPKEKI--PSYISDLTGIT 459

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + +  + S   +        QN+  +AHNA+FD G +    + +    L+   I    
Sbjct: 460 NQMIENEAISVEEAAIKIKQIFQNSILVAHNARFDYGCLVEFFKELELYELEQPVIDTLE 519

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                     R++L  L K   I       H    D+ +L+ V+ + ++   + N     
Sbjct: 520 VSRFLAPTQKRHNLKELAKNASIHYDETESHRGGYDAEVLAKVWDQFLIKLIEKNIKDLN 579

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF 213
           + ++               K  + + 
Sbjct: 580 SLNQVGSNILDFKRRGLFSKEIRVIV 605


>gi|323701749|ref|ZP_08113420.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533285|gb|EGB23153.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 930

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGLD  +D IIEIG V+++D  +    FQ  + P G     +  +L G+ D+
Sbjct: 5   FVALDLETTGLDCWSDDIIEIGMVKVIDGQE-RDFFQSLVRPGG-PLPVKIKQLTGLKDD 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +  P F +I  +   F  +     + HN KFD  F+ A       + L     ++   
Sbjct: 63  DFQSAPWFQTIIPKILTFIGD--LPLVGHNIKFDRDFLAAACGHQLPNDL--YDTLELAR 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I +   PS R           + + HR+   A   + L+  +   +     ++ +     
Sbjct: 119 ILQPSAPSHRLGELCKIAGVEVNVEHRALDDARSSARLMLKLLSNLTDTEPEVVWQLSHL 178

Query: 189 EDRFFKEEKKTVPNIS 204
                         IS
Sbjct: 179 LREAGSAWHPVFQEIS 194


>gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260650992|emb|CBG74110.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 331

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 8/203 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L    +    +   + P      P  + +HG+T +
Sbjct: 22  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPER---DPGPVWIHGLTSD 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  EF     +     +AHNA FD   I  E  R   +     R+     
Sbjct: 78  VLEGAPLFRDIAQEFSARLAD--RVLVAHNAVFDWSMIAREYARAETEAPVRQRLCTIAL 135

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                 P   + L SL   +G+       H AL D+ +L++ +   +   +  N     +
Sbjct: 136 SKELGLPLPNHKLESLAAHFGVVQQRA--HHALDDARVLAEAFRPSLRAAAASNVRLPLH 193

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
           E R   E +++     + ++  P
Sbjct: 194 ECRPLTEWRESPAAPRIGQQAGP 216


>gi|188024469|ref|ZP_02997117.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
 gi|188018579|gb|EDU56619.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
          Length = 1442

 Score = 73.0 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 4/205 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL    D IIE GA+ + +  +     Q F+ P  ++ +     L  I+ E
Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNLTNISQE 467

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D     +   +  + F   N   +AHN          +           +  IDTL 
Sbjct: 468 MVNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLKNPSIDTLM 525

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M       +F     
Sbjct: 526 ILRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIMKNSLVN-DFEIINL 584

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
                K +   + N S         
Sbjct: 585 NQINTKLQSLMLKNRSFGNWVNLYI 609


>gi|205373423|ref|ZP_03226227.1| DNA polymerase III PolC [Bacillus coahuilensis m4-4]
          Length = 1436

 Score = 73.0 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 73/197 (37%), Gaps = 6/197 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTGL +  D IIE+ AV++ D    +R F+ F  P+   +   A  ++     
Sbjct: 421 YIVFDVETTGLSANYDTIIELAAVKVFDGEIIDR-FERFANPH---HPLSATTINLTGIT 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               K +              ++   +AHNA FD+GF+N   QR          I     
Sbjct: 477 DDMVKDAPEVSEVVTDFKKWAEDGILVAHNASFDMGFLNISYQRAGLKKASNPVIDTLEL 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L K+    +     H A+ D+     +  K++    +    +   
Sbjct: 537 ARFLYPSMKNHRLNTLAKKL--DVELTQHHRAIYDAEATGYILAKLLKETYEKEIKYHDQ 594

Query: 189 EDRFFKEEKKTVPNISL 205
            + +  E          
Sbjct: 595 LNDYMGEGDSYKRARPY 611


>gi|325681442|ref|ZP_08160968.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
           albus 8]
 gi|324106932|gb|EGC01222.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
           albus 8]
          Length = 1498

 Score = 73.0 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 6/165 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD+ETTG + ++D+IIEIGAV+L      ++ F + + P G   +     L  ITD+ 
Sbjct: 448 ICFDLETTGTNPRDDKIIEIGAVKLRGLEIVDK-FDMLVDP-GCPLTEFISNLTNITDDM 505

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LK +    +    F +F  E+    +AHNA FD GFI    +R        S     +S 
Sbjct: 506 LKGQSDIKTALEAFVEFCGEKPC-LVAHNAPFDTGFIKHACEREGIKFEFSSIDTVPMSQ 564

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                                       H    D+ +L  ++I++
Sbjct: 565 LMLPQLEKHKLNYVA---EHFGYGDFQHHRGCDDAEVLGKIFIEL 606


>gi|297562082|ref|YP_003681056.1| DNA polymerase III subunit epsilon [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846530|gb|ADH68550.1| DNA polymerase III, epsilon subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 595

 Score = 73.0 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 64/204 (31%), Gaps = 3/204 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG  +   RI E+GAV +         F   + P G         L GIT  
Sbjct: 26  FVVLDLETTGTSASGSRITEVGAVRVRGGEVVGE-FATLVNP-GTPIPANITLLTGITQS 83

Query: 69  FLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +   P    +      F + E +   +AHNA FD GF+ A  +R   D      +    
Sbjct: 84  MVASAPPMEEVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDWPGYPVVDTLR 143

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                       +           +     H AL D+     V   ++     +      
Sbjct: 144 LARAVLARGETRNHRLATLAAYFGVPVAPNHRALEDARATVGVLHGLVERLRPMGVSSVE 203

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                 K   K   +   L  D P
Sbjct: 204 ELRAVTKPPTKAQRSRRHLAEDLP 227


>gi|196247598|ref|ZP_03146300.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
 gi|196212382|gb|EDY07139.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
          Length = 1434

 Score = 73.0 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 6/175 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + IIE+ AV++ D    +R F  F  P+    S   ++L GITDE
Sbjct: 419 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANPH-HPLSVTTMELTGITDE 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +   F D+  +  +   AHNA FD+GF+NA L ++    +    I     
Sbjct: 477 MVKDAPDVEEVLRRFIDWVGD--STLAAHNASFDIGFLNAGLAKMGLGKVINPVIDTLEL 534

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     + LN+LCK++   I     H A+ D+     + ++++    +   
Sbjct: 535 ARFLYPDLKNHRLNTLCKKF--DIELTQHHRAIYDAEATGHLLMRLLKEAEERGI 587


>gi|331696575|ref|YP_004332814.1| DNA polymerase III subunit epsilon [Pseudonocardia dioxanivorans
           CB1190]
 gi|326951264|gb|AEA24961.1| DNA polymerase III, epsilon subunit [Pseudonocardia dioxanivorans
           CB1190]
          Length = 586

 Score = 73.0 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 73/211 (34%), Gaps = 4/211 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG  S N  I EIGAV++             + P G    P  + L GIT  
Sbjct: 31  FVVLDLETTGGSSANHSITEIGAVKVRGGEVLGE-LATLVDP-GTGVPPGVVALTGITTA 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  + +     +F     A  +AHNA FD GF+ A  +R ++    P ++     
Sbjct: 89  MVTGAPRLAQVLPTLLEFMGG--AVLVAHNAPFDAGFLRAACERHDRRWPRPPQLCTARL 146

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  +    +           + +  H AL D+    +V  +++     +       
Sbjct: 147 ARAVLSRAEAPSVRLGALARLFGTATQPTHRALADARATVEVLHRLLERVGNLGVQSLEE 206

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                +      P   + +R        +  
Sbjct: 207 LLALARGASAHRPPEQVRRRRTLARDVPSAA 237


>gi|260769807|ref|ZP_05878740.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
 gi|260615145|gb|EEX40331.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
          Length = 205

 Score = 73.0 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 63/189 (33%), Gaps = 6/189 (3%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL     DR IEIGAV+L+D      TFQ  + P  R +             
Sbjct: 9   IVLDFETTGLSPNMGDRAIEIGAVKLVDGQVAG-TFQQLMNPGFRVSGFIEGYTGITNTM 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
                P    +           +   +AHNA FD  F++AE  RI        +  +   
Sbjct: 68  LRTALPCEEVMAEFAH---FIGDTPLVAHNASFDKRFLDAEFDRIGVRYPGQFACSMLIA 124

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
               +  P+ +       K+     +          +  L  + +  +     +N  F  
Sbjct: 125 RRLIQNAPTHKLGDLVRFKQIENDGTFHRALADSQMTASLWMLMVNDLRERGVLNPSFAL 184

Query: 188 NEDRFFKEE 196
            +      +
Sbjct: 185 MQKISKTNK 193


>gi|282850817|ref|ZP_06260191.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 224-1]
 gi|282557769|gb|EFB63357.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 224-1]
          Length = 1389

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 82/215 (38%), Gaps = 9/215 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 372 YVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH---HPLSDTTINLTSIT 427

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R   D +    +     
Sbjct: 428 DEMVGAADDEKDVIKKFKDFYGDRPLCGHNVQFDVGFVNAALRRAGLDEISQPVVDTLEV 487

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++      N  F   
Sbjct: 488 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLL---DAFNARFHEA 542

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           +     +  K        K        + +E L  
Sbjct: 543 DLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKN 577


>gi|138894778|ref|YP_001125231.1| DNA polymerase III PolC [Geobacillus thermodenitrificans NG80-2]
 gi|134266291|gb|ABO66486.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans
           NG80-2]
          Length = 1442

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 6/175 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + IIE+ AV++ D    +R F  F  P+    S   ++L GITDE
Sbjct: 427 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANPH-HPLSVTTMELTGITDE 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +   F D+  +  +   AHNA FD+GF+NA L ++    +    I     
Sbjct: 485 MVKDAPDVEEVLRRFIDWVGD--STLAAHNASFDIGFLNAGLAKMGLGKVINPVIDTLEL 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     + LN+LCK++   I     H A+ D+     + ++++    +   
Sbjct: 543 ARFLYPDLKNHRLNTLCKKF--DIELTQHHRAIYDAEATGHLLMRLLKEAEERGI 595


>gi|325843612|ref|ZP_08168008.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sp. HGF1]
 gi|325489298|gb|EGC91675.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sp. HGF1]
          Length = 1528

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 25/217 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V+D+ETTG  +  D IIEI AV++ + +  +  F  F  P+ RK S + ++L  I   
Sbjct: 433 YVVYDVETTGFSTNYDVIIEIAAVKIKNGTIIDE-FSDFANPH-RKLSLKTIELTHILQS 490

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--------------- 113
            + + P    +   F +    ++   +AHNA FD+G +    +R                
Sbjct: 491 DVDNAPELEDVMKRFKE--WSEDCILVAHNAAFDMGHLEQTYKRFNLGVCDNPVLDTLAL 548

Query: 114 ----NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                           T +    K        N         +     H A+ D+     
Sbjct: 549 ARVLYHHQYGVYWNYATDATIDEKFKRKMKRFNLKALSKFFKVDLTQHHRAIYDARATGQ 608

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
            +I M+     +    KT+++     +K+T   +   
Sbjct: 609 AFILMLRDI--LKLDIKTHDEVNQLVDKETSFKLDRT 643


>gi|295426318|ref|ZP_06818977.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664]
 gi|295063991|gb|EFG54940.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664]
          Length = 1435

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 87/225 (38%), Gaps = 16/225 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 418 FVIFDVETTGLSSVYDTIIEIGAVKMKNGKVLER-FDKFINPH---HPLSDQTINLTSIT 473

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R   + +    +     
Sbjct: 474 DEMVGAADDEDVVIRQFKDFYGDMPLCGHNVQFDVGFVNAALRRAGLEEIKQPVVDTLEV 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y   +     H A  D+     +  K++    +        
Sbjct: 534 SRLLHPEQTRHTLDSLVKKY--DVVLEHHHRANQDAEATGYLMYKLLDAFKKKF------ 585

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
            +    +      +    KR +P+   I    L ++   ++ + K
Sbjct: 586 GEDNLGKLNDFAKHGETFKRARPMHMTI----LAKNQAGLKNMYK 626


>gi|194468010|ref|ZP_03073996.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri
           100-23]
 gi|194452863|gb|EDX41761.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri
           100-23]
          Length = 954

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 78/213 (36%), Gaps = 8/213 (3%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG +    DRII+IG V + D       F+  + P   K     ++L GI D+ 
Sbjct: 21  VVDLETTGTNVNHGDRIIQIGCVLVQDGEII-NHFETKINP-REKIPRSIVQLTGIEDKD 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P F  I    +    E      AHN  FD  F+NAEL+R     L    I      
Sbjct: 79  VRKAPLFEDIAGTIYSLLAETTFV--AHNVNFDFPFLNAELERAGYPSLSIPAIDTVTLS 136

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-INFGFKTN 188
                 +    L  L     I   H   H A+ D+   +++   ++    Q      +  
Sbjct: 137 QILLPTAKSFRLRDLTSSLHIEHDHP--HSAVSDAEATAELLTDLLKRIEQLPTLTLEKI 194

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
                   ++T     +    +    +   EEL
Sbjct: 195 TQLKLNLPQQTAGVFDVELLRRRKSPQPLSEEL 227


>gi|225849248|ref|YP_002729412.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643190|gb|ACN98240.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 204

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 7/170 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGL+ K D I+ IGAV++  +    N  F   + P  R+ + E +K+HG+  
Sbjct: 34  YVVFDTETTGLNPKTDDILSIGAVKIKQNRILLNDRFYTVVKPE-REINEETIKIHGLRK 92

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII--- 124
           + L++         +F  F        + +   FDV  IN   ++I   PL   +I    
Sbjct: 93  KDLENGIPIEKAIKDFLRFIGS--RPLVGYYIDFDVAMINKYTKKIIGIPLPNKKIEVSG 150

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                     P    DL       G+ I    KH AL D+ +   +++K+
Sbjct: 151 MYYDYKIGTIPQGFVDLRFDSILKGLKIPSFGKHDALNDAIMTGLIFLKL 200


>gi|78224248|ref|YP_385995.1| DNA polymerase III subunit epsilon [Geobacter metallireducens
           GS-15]
 gi|78195503|gb|ABB33270.1| DNA polymerase III, epsilon subunit [Geobacter metallireducens
           GS-15]
          Length = 218

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 7/173 (4%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           ++ D ETTGL     DR IEIGAV + +    +R FQ  + P G++ S    +  GIT+E
Sbjct: 7   VILDFETTGLSPGYGDRAIEIGAVLVRNNRIVDR-FQSLMNP-GKRVSGFIEEYTGITNE 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P    +   F  F    N   +AHNA FD  F++AEL RI +          ++ 
Sbjct: 65  MLAKAPPAEQVMERFASFIAGHN--LVAHNASFDRRFLDAELSRIGRR--RTGDFACSML 120

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ARR + ++ N        +    +    H AL D+ + + ++  M+    + 
Sbjct: 121 AARRIYTNAPNHRLETLVSHLSLQTDGVFHRALADAEMTAQLWTAMIGELKET 173


>gi|91795118|ref|YP_564769.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
 gi|91717120|gb|ABE57046.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
          Length = 204

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 7/200 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
             +V D ETTGL     DR IEIGAV+L+D      +FQ  + P  R NS    +  GI+
Sbjct: 6   NVVVLDFETTGLSPDMGDRAIEIGAVKLVDGQVV-DSFQALINPGQRVNS-FIEQYTGIS 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ LKD P  + +  +F +F    N   +AHNA FD  F++AE            +   +
Sbjct: 64  NQMLKDAPRSNVVMGQFTEFIAGFN--LVAHNASFDKKFLDAEFSANKLS--YSGQFACS 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L ++RR    + N       ++    +    H AL D+ + +++++  +    Q     +
Sbjct: 120 LLLSRRISQEAPNHKLGTLIQHHQLANDGVFHRALADATMTANLWLHQVSLLQQRLPTQQ 179

Query: 187 TNEDRFFKEEKKTVPNISLL 206
              D   K  +     I+  
Sbjct: 180 ITLDIINKISRLPKAKIANF 199


>gi|116617801|ref|YP_818172.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096648|gb|ABJ61799.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 1437

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 7/209 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL +  DRIIE+ AV++   +   + F  ++ P G   S    KL  ITD 
Sbjct: 419 FVAFDLETTGLSAVTDRIIELSAVKMQLGNVIEK-FSEYINP-GFPLSEFTTKLTSITDA 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +  +  +I   F +     NA  + HN  FDVGF+NA   R N+  +  + I     
Sbjct: 477 MVANSDTEENIIKRFRE--WSGNAVLVGHNVTFDVGFMNAAYTRYNQPIITNAIIDTLPF 534

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L ++ KR+   I+    H A+ D+     +  +++    +  +    +
Sbjct: 535 TRWLYPDYKSYRLGTIAKRFN--INLEQAHRAIFDAETTGHIAWRLIKEAHE-RYNLNRH 591

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
            +   +  +              L    T
Sbjct: 592 NELNDRMTEGDAWKHGRPVHATLLVQNAT 620


>gi|259046785|ref|ZP_05737186.1| Gram-positive family DNA polymerase III, alpha chain
           [Granulicatella adiacens ATCC 49175]
 gi|259036553|gb|EEW37808.1| Gram-positive family DNA polymerase III, alpha chain
           [Granulicatella adiacens ATCC 49175]
          Length = 1444

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 79/199 (39%), Gaps = 5/199 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++ +    ++ F+ F+ P    +   A  +      
Sbjct: 427 YVVFDVETTGLSAIYDSIIELAAVKMKNGVVIDK-FEEFIDPG---HPLSATTIQLTGIT 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            ++   +AHNA FD+GF+N   + +  +  +   I     
Sbjct: 483 DDMVRGSKSVEQVLKEFHEFSKDCILVAHNASFDMGFLNTGYENVGIERTEQPVIDTLEL 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKH-GALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                     + LN+L KRY + +    +       +  L  +++K      Q+ +  + 
Sbjct: 543 SRMLHPQLKSHRLNTLAKRYNVALEQHHRAVYDSETTGYLCHIFLKEAANDHQLLYHDEL 602

Query: 188 NEDRFFKEEKKTVPNISLL 206
           N +   +E  K        
Sbjct: 603 NTNIHPEEVFKNGRPFHAT 621


>gi|293374694|ref|ZP_06621002.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sanguinis PC909]
 gi|292646608|gb|EFF64610.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sanguinis PC909]
          Length = 1528

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 25/217 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V+D+ETTG  +  D IIEI AV++ + +  +  F  F  P+ RK S + ++L  I   
Sbjct: 433 YVVYDVETTGFSTNYDVIIEIAAVKIKNGTIIDE-FSDFANPH-RKLSLKTIELTHILQS 490

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--------------- 113
            + + P    +   F +    ++   +AHNA FD+G +    +R                
Sbjct: 491 DVDNAPELEDVMKRFKE--WSEDCVLVAHNAAFDMGHLEQTYKRFNLGVCDNPVLDTLAL 548

Query: 114 ----NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                           T +    K        N         +     H A+ D+     
Sbjct: 549 ARVLYHHQYGVYWNYATDATIDEKFKRKMKRFNLKALSKFFKVDLTQHHRAIYDARATGQ 608

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
            +I M+     +    KT+++     +K+T   +   
Sbjct: 609 AFILMLRDI--LKLDIKTHDEVNQLVDKETSFKLDRT 643


>gi|119476123|ref|ZP_01616475.1| exonuclease [marine gamma proteobacterium HTCC2143]
 gi|119450750|gb|EAW31984.1| exonuclease [marine gamma proteobacterium HTCC2143]
          Length = 216

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV L      +R FQ  + P G++ S       GIT+ 
Sbjct: 7   VVLDFETTGLSPDAGDRAIEIGAVRLESGEVVDR-FQALMNP-GQRVSGFIEDHTGITNT 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +    + +  +F DF    N   +AHNA FD  F++AEL RI++           L+
Sbjct: 65  MLANSDHSAKVMHQFADFIEGHN--LVAHNASFDKRFLDAELARISRSY-SGDFSCSLLA 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R    +  + L +L K  GI  S    H AL DS +   +++ ++
Sbjct: 122 SRRIYQQAPNHQLGTLIKYTGIA-STGDFHRALYDSEMTVKLWLHLL 167


>gi|300856800|ref|YP_003781784.1| putative DNA polymerase III [Clostridium ljungdahlii DSM 13528]
 gi|300436915|gb|ADK16682.1| predicted DNA polymerase III [Clostridium ljungdahlii DSM 13528]
          Length = 362

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 9/201 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD +ND+I+EIGAV+  D  +T++ F   + P+      +  K++GI D 
Sbjct: 61  FVALDFETTGLDYRNDKIVEIGAVKYKDEKETDK-FHFLINPHIH-IPEKITKINGIEDS 118

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD PS + +  +  D     N   + HNA+FD+ F++  +             +    
Sbjct: 119 MVKDSPSINEVIPKLID--FMGNLPIVVHNARFDIDFLDENMSDNKYRGNSVIDTLSISR 176

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  + R                 + H A+ D+ + +++Y+K    G  I   +   
Sbjct: 177 KMFENIDNHRLQT-----IKDYLKIDLNSHRAIDDAKVAAEIYLKYCREGYPIKKDYDKL 231

Query: 189 EDRFFKEEKKTVPNISLLKRD 209
             +  K   +T      +  D
Sbjct: 232 RKQKNKINLETSFKYDPIDED 252


>gi|330793394|ref|XP_003284769.1| hypothetical protein DICPUDRAFT_75736 [Dictyostelium purpureum]
 gi|325085263|gb|EGC38673.1| hypothetical protein DICPUDRAFT_75736 [Dictyostelium purpureum]
          Length = 501

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 5/169 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I FD+ET+G  ++ D IIEIGAVEL+D  +T   FQ +  P  + +   A ++H + +
Sbjct: 288 RVICFDLETSGFSAE-DSIIEIGAVELIDGCRTGVIFQSYAKPKAQIHP-RAEEIHQLNN 345

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L+  P    +   F D+  +  +  IAHN  FD   +  EL R      +      T+
Sbjct: 346 YLLQYSPPIEVMLCSFMDWVGD--SPLIAHNLSFDKRMLLQELVRYKIPFDNDHICFCTM 403

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL-LDSHLLSDVYIKMM 175
              R+ +      L+S+ ++  I      K     +D+ +LS VY  ++
Sbjct: 404 KYFRKVYMGLNYSLDSVSQKLKINKLLLRKTHGALVDAEILSIVYTHLL 452


>gi|226313025|ref|YP_002772919.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
 gi|226095973|dbj|BAH44415.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
          Length = 1434

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 72/197 (36%), Gaps = 6/197 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD ETTGL++    IIEI AV++      ++ +   + P  +             + 
Sbjct: 421 YVVFDTETTGLNASEHTIIEIAAVKMKGAEIIDQ-WTELIDPQLQIGPKTTEITGITNEM 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               +     +           +A  +AHNA+FD  FINA  +RI  +P     +     
Sbjct: 480 LRGQETLDVVLRKFKD---FTGDAILVAHNAEFDKAFINACAKRIGMEPWTNPFLDTLPL 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L SL K++ +     + H AL D+  L+ V+ +M+    +        
Sbjct: 537 ARLMYKGMRNYRLGSLAKKFNVE--LINAHRALDDTVALAHVFQQMLKDIKEAEIKSLAE 594

Query: 189 EDRFFKEEKKTVPNISL 205
            +    EE         
Sbjct: 595 LNEKSNEEADYKSGRPF 611


>gi|163751714|ref|ZP_02158932.1| putative DNA polymerase III [Shewanella benthica KT99]
 gi|161328366|gb|EDP99525.1| putative DNA polymerase III [Shewanella benthica KT99]
          Length = 206

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 72/200 (36%), Gaps = 13/200 (6%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I+ D ETTGL   + DR IEIGAV + D      TFQ  + P  R +   A         
Sbjct: 10  IILDFETTGLSPNQGDRAIEIGAVRIQDGIVV-DTFQELMNPGFRVSGFIAGYTGISNAM 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P    +           N   +AHNA FD  F++   +    +         ++ 
Sbjct: 69  LANAAPCEEVMARFAD---FIGNHNLVAHNASFDQRFLD--AELDAINLSYGGEFACSML 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ------IN 182
           IARR +  + N        Y    +    H AL DS + + +++ M+            +
Sbjct: 124 IARRLYQDAPNHKLGGLVEYKQIENDGVFHRALADSEMTAKLWLLMLDDMRNEHSILAPS 183

Query: 183 FGFKTNEDRFFKEEKKTVPN 202
           F    +  R  K +     N
Sbjct: 184 FTLMQDLARKPKAQVNRFLN 203


>gi|154505436|ref|ZP_02042174.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149]
 gi|153794279|gb|EDN76699.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149]
          Length = 219

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 12/186 (6%)

Query: 2   IRKNKMRKI-------VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           +R+   R +       VFD+ETTG+ +  D IIEI AV++        TF   + P GR 
Sbjct: 1   MREKGNRLVQYVPDYTVFDLETTGISANMDDIIEISAVKVKGG-IVQDTFSTLVNP-GRH 58

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              +A K++GITD+ + + P      +EF  F  E     + HN +              
Sbjct: 59  IPAQATKVNGITDQMVSEAPLIREAMTEFLRFVGE--DILVGHNIQSFDMKFIYREVEEL 116

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                 +  IDTL +AR+  P  ++   +    +   IS +  H AL D  +    + +M
Sbjct: 117 FQETVSNDFIDTLYMARKCLPELKHHRLTDLAEH-FGISSKGAHRALNDCVMNQKCFEEM 175

Query: 175 MVGGSQ 180
                +
Sbjct: 176 AKLQKK 181


>gi|225026305|ref|ZP_03715497.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353]
 gi|224956369|gb|EEG37578.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353]
          Length = 1484

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 10/199 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG    +D IIEIGAV++     +   + VF+ P  R       +L  I D 
Sbjct: 453 YVVFDLETTGFSPIHDAIIEIGAVKVSKGKIS-DHYSVFVNPQ-RPIPLRITELTSIDDS 510

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D  S   I  EF  F    +   +AHNA+FDV FI    +R   +          ++
Sbjct: 511 MVADAKSIEEILPEFLSFCEGCS--LVAHNAEFDVSFIEENAKRQGFETDFTVLDTVQMA 568

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFGF 185
                   ++  LN++CKR  I   H   H A+ D+ + ++V++   +M+          
Sbjct: 569 RLLLTD-LNKFKLNTVCKRLNIKQEH--HHRAVDDARVTAEVFLRFVEMLEEQDVHTLAK 625

Query: 186 KTNEDRFFKEEKKTVPNIS 204
             +      +  K  P+  
Sbjct: 626 LNDMGAMSPDLIKKAPSYH 644


>gi|326692542|ref|ZP_08229547.1| DNA polymerase III, alpha subunit [Leuconostoc argentinum KCTC
           3773]
          Length = 1437

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 82/208 (39%), Gaps = 7/208 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL +  D+IIE+ AV++   +  ++ F  ++ P G   S    +L  ITD 
Sbjct: 419 FVAFDLETTGLSAVTDKIIELSAVKMQLGNVVDQ-FSEYINP-GFPLSEFTTELTSITDS 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +    S +   F D+  +  A  I HN  FD+GF+NA   R  K  +    I     
Sbjct: 477 MVANADPESDVIQRFRDWVGD--AVLIGHNVTFDIGFMNAAYARYQKPAIGNPVIDTLPF 534

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L ++ KR+   I+    H A+ DS     +  ++M    +  +   ++
Sbjct: 535 TRWLYPDYKSYRLGTIAKRFN--INLEQAHRAIFDSETTGHIAWRLMKEAKE-RYDLTSH 591

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           +       +              L    
Sbjct: 592 QQLNDHMTEGDAWKHGRPVHATLLVKNA 619


>gi|148973897|ref|ZP_01811430.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3]
 gi|145965594|gb|EDK30842.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3]
          Length = 213

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 89/209 (42%), Gaps = 18/209 (8%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL     DR IEIGAV+L++      TFQ  + P G + S       GIT+ 
Sbjct: 10  IVLDFETTGLSPNMGDRAIEIGAVKLVNGEVV-DTFQQLMNP-GFRVSGFIEGYTGITNR 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L    S   +  EF DF  +     +AHNA FD  F++AEL  I +D     +  +   
Sbjct: 68  MLSTAASCGEVMDEFADFIQDSQ--LVAHNASFDKRFLDAELDYIGRDYNGQFACSMLIA 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS------QI 181
               +  P+ +       K      +  + H AL DS + + +++ M+          Q 
Sbjct: 126 RRLIQDAPTHKLGDLVRFKSI---DNDGTFHRALADSEMTARLWLLMIDELQSDHGIHQP 182

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
           +F       +  K  K  +P + +  RD 
Sbjct: 183 SFQLM---QKISKTAKGAIPKLLMSSRDP 208


>gi|116629466|ref|YP_814638.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           ATCC 33323]
 gi|116095048|gb|ABJ60200.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           gasseri ATCC 33323]
          Length = 1432

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 82/215 (38%), Gaps = 9/215 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH---HPLSDTTINLTSIT 470

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R   D +    +     
Sbjct: 471 DEMVGAADDEKDVIKKFKDFYGDRPLCGHNVQFDVGFVNAALRRAGLDEISQPVVDTLEV 530

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++      N  F   
Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLL---DAFNARFHEA 585

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           +     +  K        K        + +E L  
Sbjct: 586 DLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKN 620


>gi|289578391|ref|YP_003477018.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289528104|gb|ADD02456.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9]
          Length = 1406

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 7/196 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTGL + ND IIEIGAV++ +      TF+ F+ P     S    KL GI +  +
Sbjct: 395 VFDIETTGLSNINDEIIEIGAVKIKEGKII-DTFETFVNPK-IPISSFITKLTGIDESMV 452

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD PS   I  +F +     N+  +AHNA FDV FI ++ ++ N +  +       LS  
Sbjct: 453 KDAPSIEEILPKFLE--FSSNSVLVAHNANFDVSFIKSKAKKFNLNVNNTVLDTLELSRH 510

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
             K   +            + +     H A+ D+   ++++IK +    ++      + +
Sbjct: 511 LYKDLKNYKLDT---LAEHLQVKLEHHHRAVDDARATAEIFIKTIDRLKELGVKKVKDIN 567

Query: 191 RFFKEEKKTVPNISLL 206
              +E +  +  + + 
Sbjct: 568 DILRESEVDIKKLPVY 583


>gi|300361904|ref|ZP_07058081.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03]
 gi|300354523|gb|EFJ70394.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03]
          Length = 1432

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 82/215 (38%), Gaps = 9/215 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+   +      ++  +  
Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH---HPLSDTTINLTSIT 470

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +               +     HN +FDVGF+NA L+R   D +    +     
Sbjct: 471 DEMVGAADDEKDVIKKFKDFYGDRPLCGHNVQFDVGFVNAALRRAGLDEISQPVVDTLEV 530

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +R+ L+SL K+Y + + H   H A  D+     +  K++      N  F   
Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLL---DAFNARFHEA 585

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           +     +  K        K        + +E L  
Sbjct: 586 DLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKN 620


>gi|189346782|ref|YP_001943311.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245]
 gi|189340929|gb|ACD90332.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245]
          Length = 205

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 10/184 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +VFD ETTG D K D+II IGA+ L     +   +F+V +    +    +A+ +HG+ 
Sbjct: 17  RFVVFDTETTGFDLKTDKIISIGAIALTAQRIEVGDSFEVLVR-QEKVGDRDAVSVHGLL 75

Query: 67  DEFLKDKPSFSSIFSEFWDFF------NEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            + +       S  + F D+        +     I    +         L     D    
Sbjct: 76  RKDIASGIDEKSAVTAFLDYIGNSVLVAQHAGFDITMVNRVLWKHFGIRLFNDVVDTASL 135

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           ++ ++        H +    L++LC+RY I      +H +  D++L + ++ +++  G +
Sbjct: 136 AKRLEKGPYYNLAHKAGEYRLDNLCERYNIR--LHDRHTSAGDAYLTAQLFQRLLAKGKK 193

Query: 181 INFG 184
               
Sbjct: 194 SGID 197


>gi|257055123|ref|YP_003132955.1| hypothetical protein Svir_10720 [Saccharomonospora viridis DSM
           43017]
 gi|256584995|gb|ACU96128.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Saccharomonospora viridis DSM 43017]
          Length = 570

 Score = 72.7 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 74/217 (34%), Gaps = 10/217 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG+      I EIGAV++         F   + P G    P+ + L GIT  
Sbjct: 17  FVVVDLETTGVTPDGAGITEIGAVKVRGGEVVGE-FATLVDP-GVPIPPQIVALTGITPA 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P    +   F +F +   A  +AHNA FDV F+ A  Q    +   P+ +     
Sbjct: 75  MVRSAPRIEQVLPTFLEFVSG--AVLVAHNAGFDVSFLKAACQTHGYEWPKPTVVCTLKL 132

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG---- 184
             R                         KH AL D+    DV   ++     +       
Sbjct: 133 ARRVLGRQETRGHRLSTLASLFGARSTPKHRALDDAKATVDVLHGLLERVGPLGVQSLEE 192

Query: 185 -FKTNEDRFFKEEKKTVPNISLLKRDKPLFTR-ITKE 219
                      + +K      L +R      R  + E
Sbjct: 193 LLDYLRAVTPAQRRKRGLAAHLPERPGVYLFRGPSDE 229


>gi|296129915|ref|YP_003637165.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM
           20109]
 gi|296021730|gb|ADG74966.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM
           20109]
          Length = 631

 Score = 72.7 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 69/198 (34%), Gaps = 4/198 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG  +  D I EIGAV++         FQ  + P G    P    L GIT  
Sbjct: 64  FVVVDLETTGGRAAEDAITEIGAVKVRGGEVLGE-FQTLVDPGG-PVPPFIQVLTGITTS 121

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P+   +   F +    + A  +AHNA FDVGF+ A   R  +       +     
Sbjct: 122 MLVGAPTIGEVLPSFLE--FARGAVLVAHNAPFDVGFLRAAAARSERAWPGFQVVDTVRL 179

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             R        +            +    H AL D+    DV   ++   + +      +
Sbjct: 180 ARRVVLRDEAPNHKLSTLAALFGATVTPNHRALADARATVDVLHALLGRLAPLGVTHLED 239

Query: 189 EDRFFKEEKKTVPNISLL 206
                      V   S L
Sbjct: 240 LATATDPVPADVRRRSTL 257


>gi|302389800|ref|YP_003825621.1| DNA polymerase III catalytic subunit, PolC type
           [Thermosediminibacter oceani DSM 16646]
 gi|302200428|gb|ADL07998.1| DNA polymerase III catalytic subunit, PolC type
           [Thermosediminibacter oceani DSM 16646]
          Length = 1415

 Score = 72.7 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 4/116 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTGL    D IIEIGAV++      +R F  F+ P GR  S     L GI + 
Sbjct: 404 YVVTDIETTGLSLDADEIIEIGAVKVYRGQIIDR-FHSFVNP-GRPISSHITNLTGINNA 461

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            +   P    + S+F  F    N  ++AHNA+FD GFI  + ++      +     
Sbjct: 462 MVSQAPPVKDVMSDFLRFI--GNGIFVAHNAEFDAGFIRRDCKKFGMKFDNKVMDT 515


>gi|300856235|ref|YP_003781219.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
 gi|300436350|gb|ADK16117.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
          Length = 1449

 Score = 72.7 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 80/206 (38%), Gaps = 7/206 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     ++I EIG +++ D      TF  F+ P  +      +++  ITD+
Sbjct: 426 YCVLDLETTGFSPVTEKITEIGIMKIKDGKVI-DTFSTFVNPE-KPIPLRVVEVTNITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++  +   +F +  DF  +  +  +AHNA+FDVGF+    + +  D         +L+
Sbjct: 484 MVRNAETIEQVFPKMLDFIKD--SVLVAHNAEFDVGFLKHNAKILGCDFDFTYVDTLSLA 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +            + I     H AL D      V+  M+    +       +
Sbjct: 542 QEVFPDFKTYKL---GRIAKNLGIKVEVAHRALDDVATTVKVFNVMLEKLKERGAENLKD 598

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
            D + ++E         LK    +  
Sbjct: 599 IDIYGRDEAAKKEEYKKLKTYHAIIL 624


>gi|297544667|ref|YP_003676969.1| DNA polymerase III subunit alpha [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842442|gb|ADH60958.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 1406

 Score = 72.7 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 7/196 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTGL + ND IIEIGAV++ +      TF+ F+ P     S    KL GI +  +
Sbjct: 395 VFDIETTGLSNINDEIIEIGAVKIKEGKII-DTFETFVNPK-IPISSFITKLTGIDESMV 452

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD PS   I  +F +     N+  +AHNA FDV FI ++ ++ N +  +       LS  
Sbjct: 453 KDAPSIEEILPKFLE--FSSNSVLVAHNANFDVSFIKSKAKKFNLNVNNTVLDTLELSRH 510

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
             K   +            + +     H A+ D+   ++++IK +    ++      + +
Sbjct: 511 LYKDLKNYKLDT---LAEHLQVKLEHHHRAVDDARATAEIFIKTIDRLKELGVKKVKDIN 567

Query: 191 RFFKEEKKTVPNISLL 206
              +E +  +  + + 
Sbjct: 568 DILRESEVDIKKLPVY 583


>gi|307264910|ref|ZP_07546472.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920168|gb|EFN50380.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 1407

 Score = 72.7 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 7/196 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTGL + ND IIEIGAV++ +      TF+ F+ P     S    KL GI +  +
Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKEGKII-DTFETFVNPK-IPISSFITKLTGIDESIV 453

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD PS   I   F +     N+  +AHNA FDV FI ++ ++ N +  +       LS  
Sbjct: 454 KDAPSIEEILPNFLE--FSSNSVLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRH 511

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
             K   +            + +     H A+ D+   ++++IK +    ++      + +
Sbjct: 512 LYKDLKNYKLDT---LSEHLQVKLEHHHRAVDDARATAEIFIKTIDRLKELGVKKVKDIN 568

Query: 191 RFFKEEKKTVPNISLL 206
              +E +  +  + + 
Sbjct: 569 AILRESEVDIRKLPVY 584


>gi|227432323|ref|ZP_03914316.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351929|gb|EEJ42162.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 1437

 Score = 72.7 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 7/209 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL +  DRIIE+ AV++   +   + F  ++ P G   S    KL  ITD 
Sbjct: 419 FVAFDLETTGLSAVTDRIIELSAVKMQLGNVIEK-FSEYINP-GFLLSEFTTKLTSITDA 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +  +  +I   F +     NA  + HN  FDVGF+NA   R N+  +  + I     
Sbjct: 477 MVANSDTEENIIKRFRE--WSGNAVLVGHNVTFDVGFMNAAYTRYNQPIITNAIIDTLPF 534

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L ++ KR+   I+    H A+ D+     +  +++    +  +    +
Sbjct: 535 TRWLYPDYKSYRLGTIAKRFN--INLEQAHRAIFDAETTGHIAWRLIKEAQE-RYNLNRH 591

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
            +   +  +              L    T
Sbjct: 592 NELNDRMTEGDAWKHGRPVHATLLVQNAT 620


>gi|261323134|ref|ZP_05962331.1| DNA polymerase III [Brucella neotomae 5K33]
 gi|261299114|gb|EEY02611.1| DNA polymerase III [Brucella neotomae 5K33]
          Length = 233

 Score = 72.7 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 18  IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +      E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 76  VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 134

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                    R       +     C           +HGAL D++L + +Y+        +
Sbjct: 135 FYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 192

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                    +  K   +        +  K     ++ 
Sbjct: 193 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 229


>gi|189346954|ref|YP_001943483.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245]
 gi|189341101|gb|ACD90504.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245]
          Length = 214

 Score = 72.7 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 62/213 (29%), Positives = 91/213 (42%), Gaps = 10/213 (4%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV +      +R FQ  + P G + S       GIT+E
Sbjct: 10  VVLDFETTGLSPQYGDRAIEIGAVLVEHGEIVDR-FQKLMNP-GFRISSFIEGYTGITNE 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK +P    + +EF  F   +N    AHNA FD  F++ EL+R  +   + +     L 
Sbjct: 68  MLKGQPCCEEVMAEFSGFIAGRNIV--AHNASFDRRFLDFELKRAKRVY-EGACCCSLLV 124

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGFKT 187
             R    S  + L +L    GI     S H AL D+ + + +++ M+     Q      T
Sbjct: 125 SRRIYQDSPNHRLQTLVTHAGIP-ETGSFHRALADAEMTALLWMSMIDRIRRQYGISAIT 183

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
            +      +   +     L        R  KEE
Sbjct: 184 FDQLSDLSKIDKLYTHRYLTALAEELLR--KEE 214


>gi|239616641|ref|YP_002939963.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239505472|gb|ACR78959.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 185

 Score = 72.7 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            +V D ETTG    + DRIIEI A+ +       +  F   + P  R        +HG+ 
Sbjct: 5   YVVIDTETTGPSPLRGDRIIEIAAIPIYRGKMFVDLAFHSLVNPQIR-IPAYISGIHGLK 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E +  +P+ S +F  F ++    NA  + H+ + D+ F +   + I   PL    I   
Sbjct: 64  NEDVTSEPTISDVFPRFKEYL--GNAIIVGHSIEVDMKFFDIACKEIGTFPLSNQYIDTL 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                     S +          + I     H AL D+ +   V++ M
Sbjct: 122 KIAKDLFKEGSYSLAE---LAKRLKIKDAPTHRALDDARVTGKVFLAM 166


>gi|150020931|ref|YP_001306285.1| DNA polymerase III PolC [Thermosipho melanesiensis BI429]
 gi|149793452|gb|ABR30900.1| DNA polymerase III, alpha subunit [Thermosipho melanesiensis BI429]
          Length = 1362

 Score = 72.3 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 97/226 (42%), Gaps = 12/226 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTG ++K D IIEIGAV+  D      TF  F+ P  +  S    KL GITDE +
Sbjct: 346 VFDLETTGTNAKFDEIIEIGAVKYRDGKVI-NTFSSFVKP-TKSISEFTQKLTGITDEMV 403

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD  S   +F EF  F +      +AHNA FD GFI    +R+    L     +DTL ++
Sbjct: 404 KDAKSIEEVFPEFLKFIDG--TVLVAHNADFDYGFIREVNRRLYNKEL-DFAYLDTLKLS 460

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF------- 183
           +                    +     H A  D+ + +D++ K++    +          
Sbjct: 461 KVLLRGKVKSFGLGKLVEYFKLGPFKHHRAFEDASVTADLFGKLLELLLKRGIKTLGQVN 520

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
             K          KK   +I++L RDK     + K   D H K  +
Sbjct: 521 NLKNTSSISTIRTKKQFNHITILVRDKVGLKNLYKLVSDAHVKYFK 566


>gi|295696154|ref|YP_003589392.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
 gi|295411756|gb|ADG06248.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
          Length = 1428

 Score = 72.3 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 6/171 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD ETTGL+++   +IEI AV++         +   + P G   SP+  +L GIT +
Sbjct: 416 FVVFDTETTGLNAREHTLIEIAAVKVRGGELV-DHYTSLIDP-GVPISPKIQELTGITSD 473

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K +P  S +   F        A  +AHNA+FD+GF+ +  +++ + P D   +     
Sbjct: 474 MVKGQPGLSEVLEAFRK--FAAGAVLVAHNAEFDMGFLQSAARKLGQPPWDHPVLDTLAL 531

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                     + L +L +++ +     + H A  D+   + V++ ++    
Sbjct: 532 ARVLYPRERNHRLKTLTQKFNVE--LVNHHRAAADAEATAKVFLHLLREAE 580


>gi|322417781|ref|YP_004197004.1| putative PAS/PAC sensor protein [Geobacter sp. M18]
 gi|320124168|gb|ADW11728.1| putative PAS/PAC sensor protein [Geobacter sp. M18]
          Length = 835

 Score = 72.3 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 7/169 (4%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGIT 66
            +VFD ETTGL  S+ D+++ I AV +      N   F   + P GR    E+   H I 
Sbjct: 641 YVVFDTETTGLQISQGDKVVSISAVRIRRGKVQNADIFHTLVNP-GRHIPAESTAFHRIE 699

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D PS + ++ +F       +A  +AHNA FD   ++          ++   +   
Sbjct: 700 DHMVADAPSMNEVYPQFVK--YAGDAVLVAHNAAFDKKCLDMAAAEAGLPLVENPILDTL 757

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                    +  + L+++ +R GI I    +H +L D+   + +++ ++
Sbjct: 758 FLSVGLHSGTEGHSLDAMAQRMGIAI--EGRHTSLGDARATAQIFLGLL 804


>gi|296454533|ref|YP_003661676.1| DNA polymerase III subunit epsilon [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183964|gb|ADH00846.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 235

 Score = 72.3 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 15/212 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG    +  I EIGAV + +    ++ FQ  + P  R    +   L GITD 
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            + D      +   F  +             + HN  FD+ F++   + I       +  
Sbjct: 92  MVADLDPIDKVLPRFIAWLATPAAGPTVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADY 151

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                          + L  L  R+GI      +H AL D+      +  M       ++
Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFGIA--DNEEHRALSDAIQTQQCFEWM------RHY 203

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
             + +E    + ++    N + +   + +  R
Sbjct: 204 VTEHHESEAIRWKQSPAKNSTEILHQQLVVKR 235


>gi|163844775|ref|YP_001622430.1| DNA polymerase III epsilon subunit family exonuclease [Brucella
           suis ATCC 23445]
 gi|163675498|gb|ABY39608.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
           suis ATCC 23445]
          Length = 224

 Score = 72.3 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 83/217 (38%), Gaps = 5/217 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +     +  F  + +    +      E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  VHGFDNWMTCYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 125

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                    R       +     C           +HGAL D++L + +Y+        +
Sbjct: 126 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 183

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                    +  K   +        +  K     ++ 
Sbjct: 184 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 220


>gi|330897776|gb|EGH29195.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
          japonica str. M301072PT]
          Length = 50

 Score = 72.3 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 8  RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFL 48
          R IV D ETTG+      RI+EIG VEL+    T R F V+L
Sbjct: 9  RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYL 50


>gi|320457724|dbj|BAJ68345.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 235

 Score = 72.3 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 74/212 (34%), Gaps = 15/212 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG    +  I EIGAV +      ++ FQ  + P  R    +   L GITD 
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVRKGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            + D      +   F  +             + HN  FD+ F++   + I       +  
Sbjct: 92  MVADLDPIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADY 151

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                          + L  L  R+GI      +H AL D+      +  M       ++
Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFGIA--DNEEHRALSDAIQTQQCFEWM------RHY 203

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
             + +E    + ++    N + +   + +  R
Sbjct: 204 VTEHHESEAIRWKQAPARNSTEILHQQLVVKR 235


>gi|311741608|ref|ZP_07715431.1| epsilon subunit family exonuclease [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303272|gb|EFQ79352.1| epsilon subunit family exonuclease [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 221

 Score = 72.3 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTG + + DRIIE+ AV    +     ++   L P+G+    +   +HGIT++
Sbjct: 21  FAVIDTETTGFNKRYDRIIELAAVRADSHFNPIDSWHTLLNPDGKAI--KNSHIHGITND 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
            +   P+FS ++ +F  + +       AHNA FD   I
Sbjct: 79  MVVTAPTFSEVYGDFTSYIDGMQ--LFAHNAPFDSKMI 114


>gi|160901638|ref|YP_001567219.1| DNA polymerase III, epsilon subunit [Petrotoga mobilis SJ95]
 gi|160359282|gb|ABX30896.1| DNA polymerase III, epsilon subunit [Petrotoga mobilis SJ95]
          Length = 187

 Score = 72.3 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 5/184 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEA 59
           ++      +  D ETTGL+ +  DRIIEI A+ + D     +  F   + PN      E 
Sbjct: 1   MKVKDKVFLALDFETTGLNPELGDRIIEIAAIPIYDKKINFKYAFHTLVNPN-IFIPGEV 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K H + ++ + + PS S +F  F ++ ++  +  ++HN K D+ F++   +      +D
Sbjct: 60  SKFHKLNNQDISNAPSLSEVFPRFKEYIDD--SIIVSHNVKMDLRFLDIAAKESGMFSID 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I               N      K               L +  L   YIK+    +
Sbjct: 118 NYYIDTLEISKYYFDKGPYNLEFLSKKFNLGIKQFHRAWDDALSTAKLFQKYIKLFSFEA 177

Query: 180 QINF 183
            INF
Sbjct: 178 IINF 181


>gi|110638081|ref|YP_678290.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280762|gb|ABG58948.1| DNA polymerase III, epsilon subunit [Cytophaga hutchinsonii ATCC
           33406]
          Length = 449

 Score = 72.3 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 58/183 (31%), Gaps = 3/183 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   + DIETTG  +  +RIIEI   +      T  T+Q  + P  R+       L GI 
Sbjct: 1   MMYSIIDIETTGGHASGNRIIEIAIYKFDGEKIT-DTYQTLINPE-RRIPVFITSLTGID 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E + D P F+ +  E  DF  +        N  +                L     +  
Sbjct: 59  TEMVADAPVFADVAREITDFTRDSVFVAHNVNFDYTF-VKKELQALNMPYNLPKLCTVRL 117

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                   PS             +   HR+   A     LL+ + +    G    +    
Sbjct: 118 SRKIFPGLPSYSLGNLCGSLGIDVQNRHRAAGDAEATVRLLNKLLLNDTEGFIPKSLKKN 177

Query: 187 TNE 189
           + E
Sbjct: 178 SKE 180


>gi|291459111|ref|ZP_06598501.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418365|gb|EFE92084.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 1517

 Score = 72.3 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 100/238 (42%), Gaps = 14/238 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG   + D+IIEIGAV+L +    +R   VF+ P          +L  I D  
Sbjct: 493 VVFDIETTGFHPQTDKIIEIGAVKLREGKICDRM-DVFVNPE-IPIPFRITQLTSIDDSM 550

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  + +   +  EF  F  +  A  +AHNA FD GFI    +R+             LS 
Sbjct: 551 VIGERTIEELLPEFLSFCGD--AVIVAHNADFDTGFIRENARRLGLSYDPTVVDTVGLSR 608

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY---IKMMVGGSQINFGFK 186
                  +R  L+++ K  GI+    + H A+ D+   +++Y   + ++           
Sbjct: 609 LLLPK-LNRFKLDTVAKELGIS--LLNHHRAVDDAEATAEIYQKELSLLRERGVKKLSEI 665

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL--DEHDKTIQTLGK--NAIWDRY 240
            +    ++   + +P+   +   K    RI    L  + H K  +   K   ++  RY
Sbjct: 666 DSLLFDYEANVRKLPSFHCIILAKNDIGRINLYRLISESHLKYFRKNPKIPKSLLKRY 723


>gi|295395939|ref|ZP_06806124.1| nuclease subunit of the excinuclease complex [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971212|gb|EFG47102.1| nuclease subunit of the excinuclease complex [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 560

 Score = 72.3 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 69/201 (34%), Gaps = 3/201 (1%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG +S    I EIGAV+          FQ  + P     SP   +L GIT+  +
Sbjct: 17  VVDLETTGANSAQGDITEIGAVKSRGGEIIGE-FQTLVRPTRSVISPFVERLTGITNSMV 75

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P  +S+   F +      +  +AHNA FDVGF+     R++        +       
Sbjct: 76  ATAPELASVIPMFLE--FAHGSILVAHNAGFDVGFLKEACARLDYPWPGYEVVDTVRLAR 133

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
                    +           +     H AL D+     +   M      +      +  
Sbjct: 134 LCVTRQEVRNHKLGTLATFFNVPTPPTHRALDDARATHHILQSMFELFGAVGVTTFEDLQ 193

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
              ++  K   +   L  D P
Sbjct: 194 GLKQQGWKVRQSKKHLAHDVP 214


>gi|319650832|ref|ZP_08004969.1| hypothetical protein HMPREF1013_01575 [Bacillus sp. 2_A_57_CT2]
 gi|317397430|gb|EFV78131.1| hypothetical protein HMPREF1013_01575 [Bacillus sp. 2_A_57_CT2]
          Length = 220

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 4/176 (2%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66
            IVFD ETTG      DRIIEIGAV +  +       FQ ++ P  R+ S E  +L  I+
Sbjct: 28  FIVFDTETTGFQVSATDRIIEIGAVPVKGFQVQEKDLFQTYVNPK-RQISREIRELTSIS 86

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE +KD P        F+D+   + A  +  +             +  K  L     IDT
Sbjct: 87  DELVKDAPQALEAILSFFDYVESREAVCLVGHYVGFDALAIKSEFKREKLALKNFLTIDT 146

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           L +     PS                    +H A+ D+   + +Y++++    Q  
Sbjct: 147 LDLIGFIAPSYDMRDLERYAMA-FGTRIYDRHSAVGDALTTAYLYVELLFQFQQRG 201


>gi|239623211|ref|ZP_04666242.1| DNA polymerase III subunit epsilon [Clostridiales bacterium
           1_7_47_FAA]
 gi|239522177|gb|EEQ62043.1| DNA polymerase III subunit epsilon [Clostridiales bacterium
           1_7_47FAA]
          Length = 240

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 74/199 (37%), Gaps = 7/199 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D+ETTGL+ K ++I EI A++++D   + R +  F+ P GR       +L GITD 
Sbjct: 5   YIALDLETTGLEPKQEKITEIAALKVVDGVISQR-YVTFVNP-GRSLGAYITQLTGITDG 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +  +   F  +     + HN +FD  F+         +         T  
Sbjct: 63  MLADAPPIEELIEDVVKFCGD--LPLLGHNIRFDYSFLKHAAVNRRLEFEREGIDTLT-- 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
              R   +     N  C      +   + H A  D+     +Y ++M    Q        
Sbjct: 119 -LCRAFMTGETRKNLSCACSYFHVPQSTAHRAQADAEAAHLLYQELMSRHGQDQPSMFDP 177

Query: 189 EDRFFKEEKKTVPNISLLK 207
           +   +K ++         +
Sbjct: 178 KPLIYKAKRDQAATKRQKE 196


>gi|23464698|ref|NP_695301.1| exonuclease [Bifidobacterium longum NCC2705]
 gi|189438951|ref|YP_001954032.1| DNA polymerase III subunit alpha [Bifidobacterium longum DJO10A]
 gi|239620784|ref|ZP_04663815.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132392|ref|YP_003999731.1| polc [Bifidobacterium longum subsp. longum BBMN68]
 gi|23325262|gb|AAN23937.1| possible exonuclease [Bifidobacterium longum NCC2705]
 gi|189427386|gb|ACD97534.1| DNA polymerase III alpha subunit [Bifidobacterium longum DJO10A]
 gi|239516360|gb|EEQ56227.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311772644|gb|ADQ02132.1| PolC [Bifidobacterium longum subsp. longum BBMN68]
          Length = 235

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 15/212 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG    +  I EIGAV + +    ++ FQ  + P  R    +   L GITD 
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            + D      +   F  +             + HN  FD+ F++   + I       +  
Sbjct: 92  MVADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADY 151

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                          + L  L  R+GI      +H AL D+      +  M       ++
Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFGIA--DNEEHRALSDAIQTQQCFEWM------RHY 203

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
             + +E    + ++    N + +   + +  R
Sbjct: 204 VTEHHESEAIRWKQAPAKNSAEILHQQLVVKR 235


>gi|51893409|ref|YP_076100.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857098|dbj|BAD41256.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 390

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 90/228 (39%), Gaps = 17/228 (7%)

Query: 7   MRK--IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           MR   +V D ETTGL+    RII+IG V + +     +T++  L     + S  A++++ 
Sbjct: 20  MRYNLVVIDTETTGLEYDQHRIIQIGVVAIKEQRIV-KTWESKLRLIDGEVSAYAMQVNR 78

Query: 65  ITD--EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           +       +  P   ++  +  + F        AHN  FD+GF+ AE  R          
Sbjct: 79  LDPSDMRSEKYPHPKAVLRKLQEEFLRPGVLLGAHNLSFDLGFLQAEFARHGLPQ-WQGN 137

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +D++++ R   P     L SL + +   +     H AL D+   + V + ++    Q  
Sbjct: 138 FVDSMALGRALLPDLSASLESLARHF--RVELTQHHDALADAVATAHVLLHLLDLAQQRG 195

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
                          +  P+ + +         +T+EE+      IQ 
Sbjct: 196 LDPLNLLIERQGRPIRYRPDNARV---------VTQEEILAELAKIQQ 234


>gi|257452473|ref|ZP_05617772.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|317059014|ref|ZP_07923499.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|313684690|gb|EFS21525.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
          Length = 1450

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 98/218 (44%), Gaps = 8/218 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V+D+ET G +S   +IIEIGAV++++    +R F   + P G+      + +  ITD 
Sbjct: 424 FVVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDR-FSQLVNP-GQSIPQNIVDVTNITDS 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++++P+   +  +F DF     +  +AHNA FD+G++  + ++      +PS I     
Sbjct: 482 MVQNEPNIEEVLPKFLDFIEG--SILVAHNADFDIGYLKQQCKQQGYSDFNPSFIDTLQM 539

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L  L K+ G++    + H A+ D     ++++  +           + 
Sbjct: 540 AKDLYPELKQFGLGPLNKKLGLS--LENHHRAVDDCQATGNMFLIFLDKYLDQGIHKLSE 597

Query: 189 EDRFF--KEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
               F    +K+   N+ LL +D+     + +   D H
Sbjct: 598 MQGAFPVNTKKQNTRNVMLLVKDRVGLENLNRLVSDAH 635


>gi|154484062|ref|ZP_02026510.1| hypothetical protein EUBVEN_01771 [Eubacterium ventriosum ATCC
           27560]
 gi|149735104|gb|EDM50990.1| hypothetical protein EUBVEN_01771 [Eubacterium ventriosum ATCC
           27560]
          Length = 237

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 91/234 (38%), Gaps = 15/234 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++      +  DIET+G+  K D+IIEIGAV++ D      TF   + P G K SP   
Sbjct: 1   MVKD----YVCVDIETSGIRVKWDKIIEIGAVKVRDGKAV-DTFSELINP-GLKLSPYIT 54

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GITDE LKDKP    +   F +     +   + HN  FD  F+              
Sbjct: 55  ELTGITDEMLKDKPFIEEVLPRFIE--FAGDDVIMGHNIMFDYSFLKQNAINQKLKFDKM 112

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                 ++    K       L  LC  YGI     + H A  D+ + S +Y  +M     
Sbjct: 113 GIDTLKIARKTLKG-LESRGLEYLCNYYGIA--DENHHRAFNDAEVTSKLYNVLMEKFGT 169

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
            + G        FK +K       +  R K     +      E +  I  L KN
Sbjct: 170 ESPGLFEPYQLVFKAKKMQ----PITDRQKKYLKDLMVYHKIEMNFNIDELSKN 219


>gi|297249562|ref|ZP_06933263.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|297173431|gb|EFH32795.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|326554073|gb|ADZ88712.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90]
          Length = 235

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 20  IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 77

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +      E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 78  VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 136

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                    R       +     C           +HGAL D++L + +Y+        +
Sbjct: 137 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 194

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                    +  K   +        +  K     ++ 
Sbjct: 195 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 231


>gi|257466340|ref|ZP_05630651.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917497|ref|ZP_07913737.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691372|gb|EFS28207.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 1450

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 98/218 (44%), Gaps = 8/218 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V+D+ET G +S   +IIEIGAV++++    +R F   + P G+      + +  ITD 
Sbjct: 424 FVVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDR-FSQLVNP-GQSIPQNIVDVTNITDS 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++++P+   +  +F DF     +  +AHNA FD+G++  + ++      +PS I     
Sbjct: 482 MVQNEPNIEEVLPKFLDFIEG--SILVAHNADFDIGYLKQQCKQQGYSDFNPSFIDTLQM 539

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L  L K+ G++    + H A+ D     ++++  +           + 
Sbjct: 540 AKDLYPELKQFGLGPLNKKLGLS--LENHHRAVDDCQATGNMFLIFLDKYLDQGIHKLSE 597

Query: 189 EDRFF--KEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
               F    +K+   N+ LL +D+     + +   D H
Sbjct: 598 MQGAFPVNTKKQNTRNVMLLVKDRVGLENLNRLVSDAH 635


>gi|322689603|ref|YP_004209337.1| exonuclease [Bifidobacterium longum subsp. infantis 157F]
 gi|320460939|dbj|BAJ71559.1| putative exonuclease [Bifidobacterium longum subsp. infantis 157F]
          Length = 235

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 15/212 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG    +  I EIGAV + +    ++ FQ  + P  R    +   L GITD 
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            + D      +   F  +             + HN  FD+ F++   + I       +  
Sbjct: 92  MVADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADY 151

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                          + L  L  R+GI      +H AL D+      +  M       ++
Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFGIA--DNEEHRALSDAIQTQQCFEWM------RHY 203

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
             + +E    + ++    N + +   + +  R
Sbjct: 204 VTEHHESEAIRWKQAPAKNSAEILHQQLVVKR 235


>gi|78044638|ref|YP_360855.1| putative DNA polymerase III, epsilon subunit [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996753|gb|ABB15652.1| putative DNA polymerase III, epsilon subunit [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 222

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 6/175 (3%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTGL   + D II IGAV++++ + T   F  ++ P  R+      +L GI+ + 
Sbjct: 40  VIDLETTGLKPFQGDEIIAIGAVKIINGNITRPAFHAYVNPQ-REIPEVVQRLTGISPKT 98

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ P  ++  +   DF         + N        +       K        +D    
Sbjct: 99  VQNAPPLTNTLTTLLDFARNSVIVGHSVNFDLAFLNKHLSSLTGKKLTPRLLDTVDLGIY 158

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
              + P+   +  +        IS + +H AL D+ + + V++  +      N  
Sbjct: 159 LFPREPNYSLENFA----QKFAISLQGRHTALGDAVICAKVFLNFLKILELKNIN 209


>gi|83319984|ref|YP_424323.1| DNA polymerase III, alpha subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283870|gb|ABC01802.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 1479

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 6/207 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++  KM  + FD+ETTGL  + D IIE GA+E    +   +   + + P  +       K
Sbjct: 427 LKDAKM--VFFDLETTGLSPELDEIIEFGAIEYNFKTGERKKIDILIKPKSKLKD-FTKK 483

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  I +E L++KP     F E      +  A  +AHNA FD  F++   +++    L+ +
Sbjct: 484 LTNINEEMLENKPGIEVAFKEINQVIKD--AILVAHNANFDYTFLSHWSEKLGYGKLENT 541

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQ 180
            I               + L SL KR  I+      H    D+ +L+D+Y +M+     +
Sbjct: 542 IIDTLTISRIIYPELKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERMLDDTRKK 601

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLK 207
                 ++ D+          N    K
Sbjct: 602 TKITIDSDWDKINPLNNIDNLNYHKNK 628


>gi|261416032|ref|YP_003249715.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372488|gb|ACX75233.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326359|gb|ADL25560.1| putative DnaQ family exonuclease/DinG family helicase [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 905

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 78/216 (36%), Gaps = 6/216 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGLD + D IIE+  V   +           + P+  +  P    L GI+  
Sbjct: 7   FVALDLETTGLDFEKDEIIEVALVRFENGEP-KENLDFLVKPSAVELRPFIETLTGISKA 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+    F++I  +   F  +     +AHNA FD  F+     ++               
Sbjct: 66  DLESASDFATIAGQICSFVGD--LPIVAHNAVFDSKFLKQTFTKVGISYDSHVFWDSLTL 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + L++L +   I       H AL D+     +++K +   S ++      
Sbjct: 124 SRIAFQDVPNHRLDTLVQELNIE--RSRAHRALPDADACGRLFVKALEKISTMDPWIYDA 181

Query: 189 EDRFFKEEK-KTVPNISLLKRDKPLFTRITKEELDE 223
             +  K    +T+    + K   P +   T   L+ 
Sbjct: 182 LSQVAKGSGYETLFTSKVEKLSPPKYKLPTAPALEA 217


>gi|319937397|ref|ZP_08011804.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
 gi|319807763|gb|EFW04356.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
          Length = 1438

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 4/172 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FD+ETTGL   +D I E GAV++ +  +  R  Q  + PN R  S +   L  IT+E
Sbjct: 397 FISFDLETTGLSVMDDDITEFGAVKIKNGQEIGR-LQSLIKPNKR-ISQKITNLTHITNE 454

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P+      +  +FF +     +AHNA FDVGF+N  LQR   + L    I     
Sbjct: 455 DVKDAPTIQEYIPKILEFFGD--DVIVAHNATFDVGFLNEILQRHGYEKLKNPAIDSLAL 512

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +         L ++ + Y I       H A  D+ +L+ V+  M+    Q
Sbjct: 513 AWKLLPQLKGFRLGNVARYYRIAYDGDDAHRADYDAEVLAGVFNMMLHDMMQ 564


>gi|167464458|ref|ZP_02329547.1| DNA polymerase III PolC [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 686

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL   N++IIEI  V++ D  +  R +  F+ P+  K      +L  ITDE
Sbjct: 421 YVVFDIETTGLSVINNKIIEIAGVKMKDGKEIGR-YTTFIDPH-EKIPYNIQQLTNITDE 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P  +    +F +F  +  A  +AHNA+FD+GFI A L+ I    L    +     
Sbjct: 479 MVQGAPDIAEELPKFVEFVGD--AVLVAHNARFDMGFIQANLKNIGMPELPNPSLDTLEL 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L  ++ ++    + H A+ D+  L  +   ++    + N      
Sbjct: 537 ARLLFPSLKNHRLNTLADKFKVS--LENHHRAIDDTVALMHILNHLLQEAEEQNLTQLNR 594

Query: 189 EDRFFKEEKKTVPNIS 204
            +    ++ +      
Sbjct: 595 LNDHVGKDLRNTRPFH 610


>gi|261750330|ref|ZP_05994039.1| DNA polymerase III [Brucella suis bv. 5 str. 513]
 gi|261740083|gb|EEY28009.1| DNA polymerase III [Brucella suis bv. 5 str. 513]
          Length = 233

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 5/180 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 18  IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +      E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 76  VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 134

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                    R       +     C           +HGAL D++L + +Y+        +
Sbjct: 135 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 192


>gi|119357378|ref|YP_912022.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354727|gb|ABL65598.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides
           DSM 266]
          Length = 219

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 7/171 (4%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV +      +R +Q  + P G + S       GIT+E
Sbjct: 10  VVLDFETTGLSPQYGDRAIEIGAVLVEHGEIVDR-YQKLMNP-GFRISRFIESYTGITNE 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  +P    + +EF +F    N    AHNA FD  F++ EL+R  +   + +     L 
Sbjct: 68  MLSGQPCCEEVMTEFSEFIAGHNIV--AHNASFDRRFLDFELKRAKRVY-EGACCCSLLV 124

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             R    S  + L +L    GI       H AL D+ + + +++ M+    
Sbjct: 125 SRRIYQDSPNHKLQTLVSHAGIPEIGS-FHRALADAEMTAHLWMSMIDRIR 174


>gi|323140812|ref|ZP_08075727.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414694|gb|EFY05498.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Phascolarctobacterium sp. YIT 12067]
          Length = 304

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 6/164 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTGL  +ND I EI A++  +  + +  F   + P          +L GI D  +
Sbjct: 24  VLDIETTGLSPQNDYITEISAIKYRNNRRVDE-FSSLVKPEL-SIPYYITRLTGINDAMV 81

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P+   +   F DF  +       +N  FD+ FI   L       L    +       
Sbjct: 82  ADAPAIDEVILSFMDFLAD--DIIAGYNVAFDLSFIAENLAGHYAKRLANDYVDVMKLAQ 139

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  R    ++ + + I       H AL+D ++ +  Y K+
Sbjct: 140 NELPFLGRYKQTAVAEYFNIA--TAGAHRALVDCNICNGCYQKL 181


>gi|149183493|ref|ZP_01861922.1| DNA polymerase III PolC [Bacillus sp. SG-1]
 gi|148848805|gb|EDL63026.1| DNA polymerase III PolC [Bacillus sp. SG-1]
          Length = 1375

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 6/175 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + IIE+ AV++ D    +R F+ F  P+    S   + L GITD+
Sbjct: 425 YVVFDVETTGLSAMYNTIIELAAVKIRDGEIIDR-FESFANPH-HPLSATTINLTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P  +     F D     +A  +AHNA FD+GF+N    +   D  +   I     
Sbjct: 483 MVEGAPEVAEALKAFKD--WAGDAVLVAHNASFDMGFLNVGYGKAGLDKAENPVIDTLEL 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     + LN+L K++   +     H A+ D+     + +KM+   ++   
Sbjct: 541 ARLLYPEMKNHRLNTLAKKF--DVELTQHHRAIYDAEATGYLLLKMLKDANEKGI 593


>gi|17988995|ref|NP_541628.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str.
           16M]
 gi|260756615|ref|ZP_05868963.1| DNA polymerase III [Brucella abortus bv. 6 str. 870]
 gi|260760045|ref|ZP_05872393.1| DNA polymerase III [Brucella abortus bv. 4 str. 292]
 gi|260763284|ref|ZP_05875616.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882432|ref|ZP_05894046.1| DNA polymerase III [Brucella abortus bv. 9 str. C68]
 gi|261216075|ref|ZP_05930356.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya]
 gi|261217238|ref|ZP_05931519.1| DNA polymerase III [Brucella ceti M13/05/1]
 gi|261220458|ref|ZP_05934739.1| DNA polymerase III [Brucella ceti B1/94]
 gi|261313312|ref|ZP_05952509.1| DNA polymerase III [Brucella pinnipedialis M163/99/10]
 gi|261318701|ref|ZP_05957898.1| DNA polymerase III [Brucella pinnipedialis B2/94]
 gi|261320109|ref|ZP_05959306.1| DNA polymerase III [Brucella ceti M644/93/1]
 gi|265986499|ref|ZP_06099056.1| DNA polymerase III [Brucella pinnipedialis M292/94/1]
 gi|265992959|ref|ZP_06105516.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether]
 gi|265996191|ref|ZP_06108748.1| DNA polymerase III [Brucella ceti M490/95/1]
 gi|17984832|gb|AAL53892.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str.
           16M]
 gi|260670363|gb|EEX57303.1| DNA polymerase III [Brucella abortus bv. 4 str. 292]
 gi|260673705|gb|EEX60526.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676723|gb|EEX63544.1| DNA polymerase III [Brucella abortus bv. 6 str. 870]
 gi|260871960|gb|EEX79029.1| DNA polymerase III [Brucella abortus bv. 9 str. C68]
 gi|260917682|gb|EEX84543.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya]
 gi|260919042|gb|EEX85695.1| DNA polymerase III [Brucella ceti B1/94]
 gi|260922327|gb|EEX88895.1| DNA polymerase III [Brucella ceti M13/05/1]
 gi|261292799|gb|EEX96295.1| DNA polymerase III [Brucella ceti M644/93/1]
 gi|261297924|gb|EEY01421.1| DNA polymerase III [Brucella pinnipedialis B2/94]
 gi|261302338|gb|EEY05835.1| DNA polymerase III [Brucella pinnipedialis M163/99/10]
 gi|262550488|gb|EEZ06649.1| DNA polymerase III [Brucella ceti M490/95/1]
 gi|262763829|gb|EEZ09861.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether]
 gi|264658696|gb|EEZ28957.1| DNA polymerase III [Brucella pinnipedialis M292/94/1]
          Length = 233

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 18  IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +      E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 76  VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 134

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                    R       +     C           +HGAL D++L + +Y+        +
Sbjct: 135 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 192

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                    +  K   +        +  K     ++ 
Sbjct: 193 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 229


>gi|261753605|ref|ZP_05997314.1| DNA polymerase III [Brucella suis bv. 3 str. 686]
 gi|261743358|gb|EEY31284.1| DNA polymerase III [Brucella suis bv. 3 str. 686]
          Length = 233

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 18  IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +      E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 76  VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 134

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                    R       +     C           +HGAL D++L + +Y+        +
Sbjct: 135 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARMGHRHGALEDAYLTAGLYLHQQGVAKPL 192

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                    +  K   +        +  K     ++ 
Sbjct: 193 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 229


>gi|81428867|ref|YP_395867.1| DNA polymerase III PolC [Lactobacillus sakei subsp. sakei 23K]
 gi|123564054|sp|Q38W73|DPO3_LACSS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|78610509|emb|CAI55560.1| DNA-directed DNA polymerase III, polC-type [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 1446

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 6/164 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL +  D IIE+ AV++ D      +F  F+ P  R  S    +L  IT+E
Sbjct: 425 YVIFDVETTGLSAVYDSIIELAAVKMRDGEVVA-SFDEFIDPE-RPLSAFTTQLTSITNE 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +      + + + F +     +A    HN  FD+GF+NA  +R + D +D      ++ 
Sbjct: 483 MVHGAKKEAEVLAMFKE--FTGDAVLAGHNVSFDMGFLNAGYERNDIDLIDNPVIDTLEL 540

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             +   ++ + + D  +   +  +   HR+   A    +LL  +
Sbjct: 541 SRMLHPEYKNHKLDSLTKRYKINLEHHHRANADAESTGYLLYKL 584


>gi|293363994|ref|ZP_06610730.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           alligatoris A21JP2]
 gi|292552484|gb|EFF41258.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           alligatoris A21JP2]
          Length = 1432

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 91/237 (38%), Gaps = 14/237 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FDIETTGL  +   IIE GA  + + S   R  Q F+    +  S     L GITD+
Sbjct: 401 YISFDIETTGLSPRYHEIIEFGASIIKNGSIVARE-QFFIK-ASKPLSSFTTNLTGITDK 458

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+++        E      E N   +AHNA+FD+ F+  +L          S +   + 
Sbjct: 459 MLQEEGIELKTALERILKLFE-NKIALAHNAQFDMNFVFQKLLDNCYAIPSISFVDTLMI 517

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   S++ L       GI  S    H A  D+ +L+  +I  +   +Q+N    ++
Sbjct: 518 SRIIFPNKSKHRLGDYTSNLGINYSVDDAHRADYDAEILAQAWIASISHLAQLNLNNLSD 577

Query: 189 EDRFFKEE-----------KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
              +                     I L K  K +   +T+   D     ++ L K+
Sbjct: 578 LHNYQNSNLHAKKFSNEVSIIAKNQIGLKKLFKLVTKTLTERFFDSPKLFLEDLEKD 634


>gi|290969003|ref|ZP_06560538.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290780959|gb|EFD93552.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 869

 Score = 72.3 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 82/234 (35%), Gaps = 17/234 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+E+TG +   D II+I AV L         F  +L P+       A+         
Sbjct: 501 IVFDVESTGTNPLQDEIIQIAAVRLRTDGTIQEKFMTYLRPSRTVGDSYAIHGLSDEFLQ 560

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                +  ++ +        +++  + HN  +D+  + +EL R++         +DTL I
Sbjct: 561 KNGTDARRALQNFLT---FAKDSLIVGHNVLYDISILQSELSRLSLPCPTEMPYMDTLDI 617

Query: 130 ARRKHPSSRNDLNSLCKRYGITIS---HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            RR +P            +  T     H +    L  + LL  V  + ++  +       
Sbjct: 618 YRRFYPDLEKYTLEFLSHHFSTAHKPSHNAWDDILATADLLQTVLQEKILSQTATRRELF 677

Query: 187 TNEDR---FFKEEKKTVPNISLLKRDKPLFTRITKEELDEH---DKTIQTLGKN 234
           T        F E+   +   S   R   L TRI       H    +    + + 
Sbjct: 678 TTYAHRFISFSEKISALRRQSYSLRPHELLTRIM-----LHCGVKEYYAKIDEQ 726


>gi|225629116|ref|ZP_03787149.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella ceti str. Cudo]
 gi|237817070|ref|ZP_04596062.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
           abortus str. 2308 A]
 gi|225615612|gb|EEH12661.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella ceti str. Cudo]
 gi|237787883|gb|EEP62099.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
           abortus str. 2308 A]
          Length = 248

 Score = 71.9 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 33  IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 90

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +      E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 91  VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 149

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                    R       +     C           +HGAL D++L + +Y+        +
Sbjct: 150 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 207

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                    +  K   +        +  K     ++ 
Sbjct: 208 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 244


>gi|332670685|ref|YP_004453693.1| DNA polymerase III subunit epsilon [Cellulomonas fimi ATCC 484]
 gi|332339723|gb|AEE46306.1| DNA polymerase III, epsilon subunit [Cellulomonas fimi ATCC 484]
          Length = 620

 Score = 71.9 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 65/198 (32%), Gaps = 4/198 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG    +  I EIGAV++         FQ  + P G    P    L GIT  
Sbjct: 43  FVVVDLETTGGTPADCAITEIGAVKVRGGQVLGE-FQTLVDPGG-PVPPYIQVLTGITTS 100

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P   ++   F +     +A  +AHNA FDVGF+ A   R          +     
Sbjct: 101 MLVGAPRIETVLPSFLE--FAGDAVLVAHNAPFDVGFLKAAAARTGHPWPGNRVLDTVRL 158

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             R        +            +    H AL D+    DV   ++     +      +
Sbjct: 159 ARRAVTRDEAPNHKLSTLAALFHATVTPNHRALSDARATVDVLHALLGRLGPLGVTHLED 218

Query: 189 EDRFFKEEKKTVPNISLL 206
                      V     L
Sbjct: 219 LATATDPVPADVRRKRTL 236


>gi|256059183|ref|ZP_05449390.1| DNA polymerase III, epsilon chain [Brucella neotomae 5K33]
          Length = 224

 Score = 71.9 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +      E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 125

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                    R       +     C           +HGAL D++L + +Y+        +
Sbjct: 126 FYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 183

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                    +  K   +        +  K     ++ 
Sbjct: 184 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 220


>gi|229545209|ref|ZP_04433934.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
 gi|229309754|gb|EEN75741.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
          Length = 175

 Score = 71.9 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 6/164 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                       L+ L +  G++    + H A  D+ + +++ +
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLL 170


>gi|308177615|ref|YP_003917021.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis
           Re117]
 gi|307745078|emb|CBT76050.1| putative DNA polymerase III subunit epsilon [Arthrobacter
           arilaitensis Re117]
          Length = 412

 Score = 71.9 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 87/257 (33%), Gaps = 35/257 (13%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + D ETTGL     DRI EI  V +        +++  + P           +H I    
Sbjct: 8   IVDTETTGLFPGGNDRIAEIAIVTMNRQGTIVDSWETLINPQR---DLGKQSIHRIQSRD 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDTL 127
           + D PSF  +  E     +      +AHN  FD  F+ AE ++      +    + + T+
Sbjct: 65  VLDAPSFKDLAEELHWRLSG--TVLVAHNLSFDSRFLEAEFRKCGLPVPETFLAQGMCTM 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            ++ R    +   L   C  +GI +           +         ++    +++     
Sbjct: 123 RMSHRYLQGAGRSLQDCCDSFGIDLQQAHSAVGDATATAT------LLSRYMELDPDEPE 176

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL------------GKN- 234
            + R          +     R  P+     + E   H   ++ L             +N 
Sbjct: 177 WDGRLRLAAAGRWFDSMPRSRVAPVKRSQYRTESAGH--FLEKLAARLPEFSGTATEENY 234

Query: 235 ------AIWDRYISSNQ 245
                 A+ DRY+S+++
Sbjct: 235 FAVLDLALMDRYVSAHE 251


>gi|84385238|ref|ZP_00988270.1| DNA polymerase III, alpha subunit [Vibrio splendidus 12B01]
 gi|84379835|gb|EAP96686.1| DNA polymerase III, alpha subunit [Vibrio splendidus 12B01]
          Length = 207

 Score = 71.9 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 82/195 (42%), Gaps = 15/195 (7%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL     DR IEIGAV+L++      TFQ  + P G + S       GI++ 
Sbjct: 10  IVLDFETTGLSPNMGDRAIEIGAVKLVNGEVV-DTFQQLMNP-GFRVSGFIESYTGISNR 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L    S S +  EF DF        +AHNA FD  F++AEL  I +D     +  +   
Sbjct: 68  MLSTAASCSEVMDEFADFIQGSQ--LVAHNASFDKRFLDAELDFIGRDYTGKFACSMLIA 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG------SQI 181
               +  P+ +       K      +  + H AL DS + + +++ M+          Q 
Sbjct: 126 RRLIQDAPTHKLGDLVRFKNI---DNDGTFHRALADSEMTARLWLLMIDELQSDHGIQQP 182

Query: 182 NFGFKTNEDRFFKEE 196
           +F       +  K  
Sbjct: 183 SFQLMQKISKTAKGS 197


>gi|256961321|ref|ZP_05565492.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|293383606|ref|ZP_06629516.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           R712]
 gi|293387281|ref|ZP_06631838.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           S613]
 gi|312906156|ref|ZP_07765168.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           DAPTO 512]
 gi|312909501|ref|ZP_07768356.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis DAPTO 516]
 gi|256951817|gb|EEU68449.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|291079118|gb|EFE16482.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           R712]
 gi|291083318|gb|EFE20281.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           S613]
 gi|310627802|gb|EFQ11085.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           DAPTO 512]
 gi|311290174|gb|EFQ68730.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis DAPTO 516]
          Length = 929

 Score = 71.9 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + +       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQEGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSAF 201


>gi|254699857|ref|ZP_05161685.1| DNA polymerase III, epsilon chain [Brucella suis bv. 5 str. 513]
          Length = 224

 Score = 71.9 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 5/180 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +      E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 125

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                    R       +     C           +HGAL D++L + +Y+        +
Sbjct: 126 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 183


>gi|291530449|emb|CBK96034.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium
           siraeum 70/3]
          Length = 1605

 Score = 71.9 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 55/98 (56%), Gaps = 4/98 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFDIETTGL   N+RI EIGAV+L +    +R F  F+ P          +L GITD+ 
Sbjct: 592 IVFDIETTGLHPANERITEIGAVKLRNMEIVDR-FSTFVNP-MMPIPSNITELTGITDDM 649

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           + D P+     S+F  F    N+   AHNAKFDV FI 
Sbjct: 650 VADAPTEDVAVSDFMAFC--GNSPVCAHNAKFDVSFIR 685


>gi|303238571|ref|ZP_07325105.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
 gi|302593969|gb|EFL63683.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
          Length = 1446

 Score = 71.9 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 79/206 (38%), Gaps = 7/206 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     ++I E+G ++L D    ++ F  F+ P  +      +++  ITD 
Sbjct: 423 YCVLDLETTGFSPLTEKITEVGIMKLKDGKVIDQ-FSCFVNPE-KPIPARVVEVTNITDY 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D  +   +F +  +F     +  +AHNA+FD+GF+    + +  +         +L+
Sbjct: 481 MVQDAETIEKVFPKMLEFIEG--SVLVAHNAEFDIGFLKHNAKVLGYNFDFTYLDTLSLA 538

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   S            + I     H AL D      V+  M+    +       +
Sbjct: 539 KEIFPDYKSYKL---GRIAKNLGIKVDVAHRALDDVDTTVKVFNIMLEKLKEKGVQTLED 595

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
            D +  +E+        LK    +  
Sbjct: 596 VDTYSSDEEAKKSEYKKLKTYHAIIL 621


>gi|261879422|ref|ZP_06005849.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
           bergensis DSM 17361]
 gi|270333990|gb|EFA44776.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
           bergensis DSM 17361]
          Length = 287

 Score = 71.9 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 70/200 (35%), Gaps = 6/200 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+FD+ETTGLD   DRII+I  +++       R   +F+ P  +   P   +L  ITD+ 
Sbjct: 10  IIFDLETTGLDLATDRIIQISYIKVDPQGNEERK-SLFVNPE-KPIPPFVQELTHITDDM 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P+F  I     + F   +      N           L+          R+ID  +I
Sbjct: 68  VKDAPTFKQIAKSLQETFAGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFQRCRLIDAQNI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +  P       +   R+           A          Y  +     + N     + 
Sbjct: 128 FHKMEP----RNLAAAYRFYTGNKMEDDFQAHRADEDTEATYRVLQGQLDKYNPENPADP 183

Query: 190 DRFFKEEKKTVPNISLLKRD 209
           ++    +   +   S +  +
Sbjct: 184 EKTLANDMDVLAEFSTMSNN 203


>gi|229820392|ref|YP_002881918.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM
           12333]
 gi|229566305|gb|ACQ80156.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM
           12333]
          Length = 590

 Score = 71.9 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 62/174 (35%), Gaps = 4/174 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG     D I EIGAV +             + P GR   P    L GIT+ 
Sbjct: 32  FVVVDLETTGGSPNADAITEIGAVRVRGGVVEGE-LGTLVDP-GRSIPPTITVLTGITNA 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P    +   F +      A  +AHNA+FD GF+    +R+      P  +     
Sbjct: 90  MVIGAPPIEEVLPSFLE--FAHGAVLVAHNARFDTGFLRVAAERMGLTWPKPLVVDTVQL 147

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
             R        +            S    H AL D+    DV   ++   + + 
Sbjct: 148 ARRVVSRDEAPNHRLGSLARLFHASVTPDHRALTDARATVDVLHGLLARMAPLG 201


>gi|288819191|ref|YP_003433539.1| DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|46849522|dbj|BAD17850.1| putative DNA polymerase III epsilon subunit [Hydrogenobacter
           thermophilus]
 gi|288788591|dbj|BAI70338.1| DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|308752773|gb|ADO46256.1| DNA polymerase III, epsilon subunit [Hydrogenobacter thermophilus
           TK-6]
          Length = 191

 Score = 71.9 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 6/168 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIETTG D ++  IIEI  V +     T+R F   + P G       +KL GIT+ 
Sbjct: 10  FVSIDIETTGFDEESSDIIEIACVRVEGCIITDR-FSTLVNP-GYLLPDRIVKLTGITNA 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  KP+   +   F  F  +  +  + H+ + D+ FI+   + +         I     
Sbjct: 68  MIVGKPNIYEVLPHFLRFVGD--SIIVGHHVEKDMAFIDKAYRVLYGKKFKHPHICTLNL 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                    R  L  L   + I       H AL D+   + ++I+++ 
Sbjct: 126 ARNILPDLKRYSLKDLADHFNIRYRRL--HRALDDAETTAYLFIELLN 171


>gi|291557938|emb|CBL35055.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium
           siraeum V10Sc8a]
          Length = 1605

 Score = 71.9 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 55/98 (56%), Gaps = 4/98 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFDIETTGL   N+RI EIGAV+L +    +R F  F+ P          +L GITD+ 
Sbjct: 592 IVFDIETTGLHPANERITEIGAVKLRNMEIVDR-FSTFVNP-MMPIPSNITELTGITDDM 649

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           + D P+     S+F  F    N+   AHNAKFDV FI 
Sbjct: 650 VADAPTEDVAVSDFMAFC--GNSPVCAHNAKFDVSFIR 685


>gi|195952795|ref|YP_002121085.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1]
 gi|195932407|gb|ACG57107.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1]
          Length = 196

 Score = 71.9 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTGL+     IIEI A  +     T + F   + P G        ++ GIT+ 
Sbjct: 12  YVVLDIETTGLNPDEHEIIEIFAFLVEKERIT-KQFHRLINP-GFFIPRRITEITGITNA 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  +P    I  +F +F  +     + HN KFD+ F++          L+   I     
Sbjct: 70  MLVGQPKVEGIIYDFDNFVKD--YIIVGHNVKFDLSFLSKAYSIYLHKKLNSPNICTLEL 127

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +         L+++   + I       H A  D+ L  +++ K+M    +
Sbjct: 128 SKKLIPNLKSYKLSAVADYFNIKYERL--HRAKDDALLTYNIFNKLMDIIRR 177


>gi|148656033|ref|YP_001276238.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1]
 gi|148568143|gb|ABQ90288.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1]
          Length = 956

 Score = 71.9 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 11/180 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D+ETTGL++  D IIEI AV+  +  +   TF   + P        + +L GIT +
Sbjct: 5   YIAIDVETTGLEAGVDEIIEIAAVKF-NADEVLETFSTLVQP-VHSLPLNSSRLTGITAD 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ +   F  F   +N   + HN +FD+  + A+  R+ +   D   +     
Sbjct: 63  MLASAPRFAEVAPRFAAFL--KNYPLVGHNVEFDLRMLRAQGMRLPQPAFDTFELA---- 116

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  +    L++L    G  I H   H AL D+ +   +++ ++     +       
Sbjct: 117 -TLLMPRTPAYRLSALAATLG--IHHDEAHRALSDADVTRQIFLYLLRRIEALPLDDLNE 173


>gi|315146656|gb|EFT90672.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4244]
          Length = 929

 Score = 71.9 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D  +DRII+ G V + +       F   + PN +    +   L GI++ 
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLVQEGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    + +  +    ++AHN  FD  F+  EL R    PL    I     
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L+ L +  G++    + H A  D+ + +++ + +      +       
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 189 EDRFFKEEKKTVPNI 203
                ++  +     
Sbjct: 187 IAELSQQTARETSAF 201


>gi|78777649|ref|YP_393964.1| DNA polymerase III subunit epsilon [Sulfurimonas denitrificans DSM
           1251]
 gi|78498189|gb|ABB44729.1| Exonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 205

 Score = 71.9 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 7/175 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGL+ K D I+ IGAV++  +   T++TF+VFL  N ++ S  ++K+HGI  
Sbjct: 34  YVVFDTETTGLNPKVDEILSIGAVKIKDNRVLTSQTFEVFLQ-NSKEISSNSIKIHGIRP 92

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             LKD  +      EF +F        I +  +FDV  IN   + +    L    I  + 
Sbjct: 93  FDLKDAKTTKEGIVEFLNFIGS--RPLIGYYLEFDVAMINRYTKPLLGINLPNKMIEVSE 150

Query: 128 SIARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               +     P    DL         +I +   H A+ D+ + + +Y+K+     
Sbjct: 151 IYFDKTISLIPQGNIDLRFDTILKNCSIPNMGAHNAVNDAIMTAMIYLKLTKEKE 205


>gi|148544145|ref|YP_001271515.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri
           DSM 20016]
 gi|184153518|ref|YP_001841859.1| ATP-dependent helicase [Lactobacillus reuteri JCM 1112]
 gi|227364574|ref|ZP_03848635.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM2-3]
 gi|325682311|ref|ZP_08161828.1| ATP-dependent DNA helicase DinG [Lactobacillus reuteri MM4-1A]
 gi|148531179|gb|ABQ83178.1| DnaQ family exonuclease/DinG family helicase, putative
           [Lactobacillus reuteri DSM 20016]
 gi|183224862|dbj|BAG25379.1| ATP-dependent helicase [Lactobacillus reuteri JCM 1112]
 gi|227070411|gb|EEI08773.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM2-3]
 gi|324978150|gb|EGC15100.1| ATP-dependent DNA helicase DinG [Lactobacillus reuteri MM4-1A]
          Length = 954

 Score = 71.9 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 77/213 (36%), Gaps = 8/213 (3%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG +    DRII+IG V + D       F+  + P   K     ++L GI D+ 
Sbjct: 21  VVDLETTGTNVNHGDRIIQIGCVLVQDGEII-NHFETKINP-REKIPRSIVQLTGIEDKD 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P F  I    +    E      AHN  FD  F+NAEL+R     L    I      
Sbjct: 79  VRKAPLFEDIAGTIYSLLAETTFV--AHNVNFDFPFLNAELERAGYPSLSIPAIDTVTLS 136

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGFKTN 188
                 +    L  L     I   H   H A+ D+   +D+   ++           +  
Sbjct: 137 QILLPTAKSFRLRDLTSSLHIEHDHP--HSAVSDAEATADLLNDLLKRVQELPTLTLEKI 194

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
                   ++T        + +    +   EEL
Sbjct: 195 TQLKLNLPQQTAGVFDAELQRRRKSPQPLSEEL 227


>gi|62317520|ref|YP_223373.1| exonuclease [Brucella abortus bv. 1 str. 9-941]
 gi|83269503|ref|YP_418794.1| DNA polymerase III subunit epsilon:exonuclease [Brucella melitensis
           biovar Abortus 2308]
 gi|148557905|ref|YP_001257609.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189022776|ref|YP_001932517.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|225686408|ref|YP_002734380.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella melitensis ATCC 23457]
 gi|254691019|ref|ZP_05154273.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 6 str. 870]
 gi|254695674|ref|ZP_05157502.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698803|ref|ZP_05160631.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254705882|ref|ZP_05167710.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis
           M163/99/10]
 gi|254711110|ref|ZP_05172921.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis B2/94]
 gi|254712430|ref|ZP_05174241.1| DNA polymerase III, epsilon chain [Brucella ceti M644/93/1]
 gi|254715502|ref|ZP_05177313.1| DNA polymerase III, epsilon chain [Brucella ceti M13/05/1]
 gi|254732250|ref|ZP_05190828.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 4 str. 292]
 gi|256015402|ref|YP_003105411.1| exonuclease, putative [Brucella microti CCM 4915]
 gi|256029491|ref|ZP_05443105.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis
           M292/94/1]
 gi|256111454|ref|ZP_05452474.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 3 str.
           Ether]
 gi|256157686|ref|ZP_05455604.1| DNA polymerase III, epsilon chain [Brucella ceti M490/95/1]
 gi|256253341|ref|ZP_05458877.1| DNA polymerase III, epsilon chain [Brucella ceti B1/94]
 gi|256256204|ref|ZP_05461740.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 9 str. C68]
 gi|256262453|ref|ZP_05464985.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|260167417|ref|ZP_05754228.1| DNA polymerase III, epsilon chain [Brucella sp. F5/99]
 gi|260544758|ref|ZP_05820579.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260564713|ref|ZP_05835198.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|261756828|ref|ZP_06000537.1| DNA polymerase III [Brucella sp. F5/99]
 gi|62197713|gb|AAX76012.1| exonuclease, hypothetical [Brucella abortus bv. 1 str. 9-941]
 gi|82939777|emb|CAJ12783.1| DNA polymerase III, epsilon subunit:Exonuclease [Brucella
           melitensis biovar Abortus 2308]
 gi|148369190|gb|ABQ62062.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189021350|gb|ACD74071.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|225642513|gb|ACO02426.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella melitensis ATCC 23457]
 gi|255998062|gb|ACU49749.1| exonuclease, putative [Brucella microti CCM 4915]
 gi|260098029|gb|EEW81903.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260152356|gb|EEW87449.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|261736812|gb|EEY24808.1| DNA polymerase III [Brucella sp. F5/99]
 gi|263092188|gb|EEZ16485.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|326410781|gb|ADZ67845.1| DNA polymerase III, epsilon subunit [Brucella melitensis M28]
          Length = 224

 Score = 71.9 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +      E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 125

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                    R       +     C           +HGAL D++L + +Y+        +
Sbjct: 126 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 183

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                    +  K   +        +  K     ++ 
Sbjct: 184 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 220


>gi|23500370|ref|NP_699810.1| exonuclease [Brucella suis 1330]
 gi|161620685|ref|YP_001594571.1| exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|254702995|ref|ZP_05164823.1| exonuclease, RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
 gi|260568091|ref|ZP_05838560.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|23463988|gb|AAN33815.1| exonuclease, putative [Brucella suis 1330]
 gi|161337496|gb|ABX63800.1| Exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|260154756|gb|EEW89837.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
          Length = 224

 Score = 71.5 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +      E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 125

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                    R       +     C           +HGAL D++L + +Y+        +
Sbjct: 126 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARMGHRHGALEDAYLTAGLYLHQQGVAKPL 183

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                    +  K   +        +  K     ++ 
Sbjct: 184 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 220


>gi|315504521|ref|YP_004083408.1| DNA polymerase iii, epsilon subunit [Micromonospora sp. L5]
 gi|315411140|gb|ADU09257.1| DNA polymerase III, epsilon subunit [Micromonospora sp. L5]
          Length = 584

 Score = 71.5 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 69/206 (33%), Gaps = 4/206 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       I EIGAV++    +        + P G    P    L GIT  
Sbjct: 32  FVVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITQA 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P    +   F +F ++  A  +AHNA +DVGF+ A   +      +P  +     
Sbjct: 90  MLLPAPPIEQVLPSFLEFISD--AVLVAHNAPYDVGFLKAACAKHGYRWPNPRVLDTAAL 147

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             R        +            + +  H AL D+    DV   ++        G    
Sbjct: 148 ARRVLTRDEVPNRKLGTLAAYFRTATQPTHRALDDAKATVDVLHGLIGRLGGHRVGTVGE 207

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
              F +    T      L    P   
Sbjct: 208 AIEFARAVTPTQRRKRHLADGLPKVP 233


>gi|95929273|ref|ZP_01312017.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
 gi|95134771|gb|EAT16426.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
          Length = 217

 Score = 71.5 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 7/166 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ET+G+   + DR IE+GAV++ D       F+  + P G + S    +  GIT++
Sbjct: 11  IVLDFETSGMAPQRGDRAIEVGAVKVNDGRIV-DHFESLMNP-GFRVSSFIEEFTGITND 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P    +  +F +F     A  +AHNA FD  F+ +E  RI +  L       ++ 
Sbjct: 69  ELRRAPRCEEVMHQFSEFIGG--APLVAHNASFDQRFLKSEFARIGECKLLRFG--CSML 124

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +ARR +P + N   +    Y    S    H AL D+ + + ++++M
Sbjct: 125 VARRLYPEAPNHKLATLVAYKNLPSQGVFHRALADAEMTAHLWMEM 170


>gi|227546804|ref|ZP_03976853.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|317481634|ref|ZP_07940669.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|322691564|ref|YP_004221134.1| exonuclease [Bifidobacterium longum subsp. longum JCM 1217]
 gi|227212766|gb|EEI80647.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|316916924|gb|EFV38311.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456420|dbj|BAJ67042.1| putative exonuclease [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 235

 Score = 71.5 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 15/212 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG    +  I EIGAV + +    ++ FQ  + P  R    +   L GITD 
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            + D      +   F  +             + HN  FD+ F++   + I       +  
Sbjct: 92  MVADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADY 151

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                          + L  L  R+GI      +H AL D+      +  M       ++
Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFGIA--DNEEHRALSDAIQTQQCFEWM------RHY 203

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
             + +E    + ++    N + +   + +  R
Sbjct: 204 VTEHHETEAIRWKQAPAKNSAEILHQQLVVKR 235


>gi|94263435|ref|ZP_01287248.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
 gi|94270278|ref|ZP_01291698.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
 gi|93450870|gb|EAT01889.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
 gi|93456165|gb|EAT06304.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
          Length = 238

 Score = 71.5 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 9/182 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD E TGLD + D I+ IGAV + +       TF V + P  +    ++  +H +T 
Sbjct: 40  FVVFDTELTGLDRRRDEIVSIGAVRINNLRIMVGDTFYVQVKP-SQALPKDSTLIHRLTP 98

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQ--NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             L D P  +++   F D+  +      ++  +  F              +P   +  + 
Sbjct: 99  HQLSDAPPLATVLPGFIDYCGQSLLVGHFVGLDVAFVNRACLRYYGARLSNPCLDTMHLA 158

Query: 126 TLSIARRKHPSSRNDLNSL-----CKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                 +           +            +   + H A  D+   + ++I ++     
Sbjct: 159 QTHTEMQWQQYHDRFRMDISYNLAALGAKYGLPAFTHHNAYEDALQTAYLFIYLVKKMRS 218

Query: 181 IN 182
             
Sbjct: 219 QG 220


>gi|225419839|ref|ZP_03762142.1| hypothetical protein CLOSTASPAR_06180 [Clostridium asparagiforme
           DSM 15981]
 gi|225041521|gb|EEG51767.1| hypothetical protein CLOSTASPAR_06180 [Clostridium asparagiforme
           DSM 15981]
          Length = 255

 Score = 71.5 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 73/199 (36%), Gaps = 4/199 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIETTGL+ + D+I EI A+ ++D +   R F   + P GR      ++L GITD 
Sbjct: 16  YVAIDIETTGLEPRLDKITEIAALRVVDGAVEGR-FVTLVNP-GRPLGERIVELTGITDG 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P+   +      F  +     + HN  FD  F+         D          L 
Sbjct: 74  MLAGAPAIGDVIGPLVRFCGD--LPLLGHNILFDYSFLKRAAVNQGLDFQREGIDTLNLC 131

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
            A       +N   +        +         L +HLL    ++    G +  F  K+ 
Sbjct: 132 RAFMPGEHKKNLSAACAFYCIEQVEAHRAEADALSAHLLYQKLLEGRGEGREELFTPKSL 191

Query: 189 EDRFFKEEKKTVPNISLLK 207
             +  KE+  T      L+
Sbjct: 192 IYKAKKEQPVTKRQKEYLQ 210


>gi|87120665|ref|ZP_01076558.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121]
 gi|86163893|gb|EAQ65165.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121]
          Length = 203

 Score = 71.5 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 10/192 (5%)

Query: 7   MR---KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           MR    ++ D ETTGL   + DR IEIGAV+L         FQ  + P G   +      
Sbjct: 1   MRADSLVILDFETTGLSPDQGDRAIEIGAVKLEAGEVVAE-FQALMNP-GFSVTSFIEGY 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI++  L    S   +   F +F  + N   IAHNA FD  F++AE  R N        
Sbjct: 59  TGISNAMLAQADSCREVMESFAEFIADNN--LIAHNASFDRRFLDAEFSRFNHVY-QGDF 115

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
               L   R    +  + L +L     ++      H AL D+ + + +++ M+    +  
Sbjct: 116 SCSLLLSRRIFQDAPSHSLGALVNYINLS-GTGDFHRALYDAQMTAKLWMAMLDNIGERY 174

Query: 183 FGFKTNEDRFFK 194
             F  N ++  +
Sbjct: 175 GLFDLNFEQIQQ 186


>gi|169629058|ref|YP_001702707.1| hypothetical protein MAB_1971c [Mycobacterium abscessus ATCC 19977]
 gi|169241025|emb|CAM62053.1| Probable DNA polymerase III epsilon subunit [Mycobacterium
           abscessus]
          Length = 600

 Score = 71.5 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 79/206 (38%), Gaps = 4/206 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG  ++ND I EIGAV++             + P  R   P+ ++L GIT  
Sbjct: 28  FVVVDLETTGGSAENDAITEIGAVKVRGGEVLGE-LATLVDPQ-RSLPPQIVRLTGITSA 85

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P  + +   F +    + A  +AHNA FD+GF+ A  ++   D   P+ +     
Sbjct: 86  MLVDAPPIAQVLPAFLE--FARGAVLVAHNAGFDIGFLKAAARQCGIDWPQPAVLCTVRL 143

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             R         ++       +  S    H AL D+    DV   ++        G    
Sbjct: 144 ARRVLSRDEAPRVSLGALAQLLGASTTPNHRALDDARATVDVLHALISRVGNQGVGTMDE 203

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
             R+  +    +     L    P   
Sbjct: 204 LRRYRTQVPSALRGKRRLADAMPYAP 229


>gi|257876649|ref|ZP_05656302.1| DNA polymerase III [Enterococcus casseliflavus EC20]
 gi|257810815|gb|EEV39635.1| DNA polymerase III [Enterococcus casseliflavus EC20]
          Length = 918

 Score = 71.5 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 6/174 (3%)

Query: 7   MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+ I  V D+ETTG DS  DRII+ G V + D    NR F   + P+ R+ S +  +L  
Sbjct: 1   MKPIYAVVDLETTGTDSTIDRIIQFGCVLVQDGKIINR-FAADINPD-RRISKQIQRLTH 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT++ +   P F  I    ++     N  ++AHN  FD  F++ E  R    PL    I 
Sbjct: 59  ITNQQVSKAPYFEDIADTIYNLL--SNTIFVAHNIYFDYHFLSNEFVRCGLPPLSIPGID 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                       S   L  L    G    +  +  +  +      +YI+ ++  
Sbjct: 117 TVELSQVFLPTESSFRLGDLADSIGFRHDNPHQADSDAEVTAALFLYIEAIMRQ 170


>gi|171056929|ref|YP_001789278.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170774374|gb|ACB32513.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
          Length = 731

 Score = 71.5 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 8/176 (4%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGL+    D II+IGA  +         +F+  + P  R   P  + +HGI  +
Sbjct: 543 VFDTETTGLNPSDGDEIIQIGATRISGGKLRRQESFEQLVDPQ-RPIPPAGIPIHGIKPD 601

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P+   +   F      Q+   +AHNA FD+ F+   L++     +    ++DTL 
Sbjct: 602 MVAGQPTIDHVLPAFHA--FAQDTVLVAHNAAFDMRFLQ--LKQDRTGLVFDQPVLDTLL 657

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           ++   HP+  +           +I+   +H AL D+ + ++V+++++     +   
Sbjct: 658 LSAVVHPNQESHRLEAIAER-FSITVVGRHTALGDAMVTAEVFVRLIPLLHAMGIE 712


>gi|56475526|ref|YP_157115.1| exonuclease [Aromatoleum aromaticum EbN1]
 gi|56311569|emb|CAI06214.1| conserved hypothetical protein, possibly exonuclease [Aromatoleum
           aromaticum EbN1]
          Length = 642

 Score = 71.5 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 5/99 (5%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGLD  K D II+IGA  +++       +F+  + P  R  SPE++K+HGIT +
Sbjct: 454 VFDTETTGLDPSKGDEIIQIGATRIVNSKLLRQESFEQLIDPE-RGVSPESVKIHGITPD 512

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            L  +P+ + +   F      Q+   IAHNA FD+ F+ 
Sbjct: 513 MLAGQPTIARVLPAFHA--FAQDTVLIAHNAAFDMRFLQ 549


>gi|86145733|ref|ZP_01064062.1| DNA polymerase III, alpha subunit [Vibrio sp. MED222]
 gi|218676919|ref|YP_002395738.1| DNA polymerase III, alpha subunit [Vibrio splendidus LGP32]
 gi|85836432|gb|EAQ54561.1| DNA polymerase III, alpha subunit [Vibrio sp. MED222]
 gi|218325187|emb|CAV27099.1| DNA polymerase III, alpha subunit [Vibrio splendidus LGP32]
          Length = 207

 Score = 71.5 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 15/195 (7%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL     DR IEIGAV+L++      TFQ  + P G + S       GI++ 
Sbjct: 10  IVLDFETTGLSPNMGDRAIEIGAVKLVNGEVV-DTFQQLMNP-GFRVSGFIESYTGISNR 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L    S S +  EF +F        +AHNA FD  F++AEL  I +D     +  +   
Sbjct: 68  MLSTAASCSEVMDEFANFIQGSQ--LVAHNASFDKRFLDAELDFIGRDYTGKFACSMLIA 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG------SQI 181
               +  P+ +       K      +  + H AL DS + + +++ M+          Q 
Sbjct: 126 RRLIQDAPTHKLGDLVRFKNI---DNDGTFHRALADSEMTARLWLLMIDELQSDHGIQQP 182

Query: 182 NFGFKTNEDRFFKEE 196
           +F       +  K  
Sbjct: 183 SFQLMQKISKTAKGS 197


>gi|194246482|ref|YP_002004121.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
 gi|193806839|emb|CAP18268.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
          Length = 1522

 Score = 71.5 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 5/172 (2%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
             M  +VFDIETTG     D+IIEI   ++ +    ++ F   + P           L  
Sbjct: 412 KNMEYVVFDIETTGFSKVRDKIIEISGFKIKNNIVIDQ-FYSLVNPE-IDLPENIYLLTK 469

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I +E LK+ P    +  +F  F        +AHNA FDV FI  + +++N        +I
Sbjct: 470 IKNETLKNAPKILQVLPDFLKFIKNTC--LVAHNASFDVSFIFEKSKQLNISFP-LLPVI 526

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           DTL++++    S     +         +     H A  D+   +++++K++ 
Sbjct: 527 DTLALSQYYFSSFMKFFSLKRLAAKFKVKLEEHHRAKDDAKATTEIFMKILN 578


>gi|59713199|ref|YP_205974.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
 gi|59481447|gb|AAW87086.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
          Length = 212

 Score = 71.5 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 5/97 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   + DR IEIGAV+L +    +R FQ  + P G + SP      GI++ 
Sbjct: 16  VVLDFETTGLSPNQGDRAIEIGAVKLENGVVVDR-FQGLMNP-GFRVSPFIENYTGISNR 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            L D  S   + +EF +F    N   +AHNA FD  F
Sbjct: 74  MLADAASCDEVMNEFANFIQGCN--LVAHNASFDKRF 108


>gi|266619696|ref|ZP_06112631.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
 gi|288868749|gb|EFD01048.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
          Length = 264

 Score = 71.5 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 5/167 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +VFD+ETTG+ +  D IIEI A+++ ++ +   TF   + P  R     A K++GITD
Sbjct: 57  NYVVFDLETTGISAVKDDIIEISALKVKNHEQV-ETFSRLVNP-RRPIPAGATKVNGITD 114

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++ +P    I  EF DF +      I HN +                    +  IDTL
Sbjct: 115 EMVQSEPGLEFILPEFLDFIDG--EILIGHNIQSFDLLFLNRAADEVCRKAVLNDFIDTL 172

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +AR   P       +    Y   IS    H A  D  +    Y  M
Sbjct: 173 FMARALLPGLSRHRLTDLADY-FKISSEGAHRAFNDCVMNQICYEHM 218


>gi|309776025|ref|ZP_07671017.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916307|gb|EFP62055.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 1271

 Score = 71.5 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 5/228 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL S+ D IIE G   + D +   ++ Q+F+ P     S    +L GIT+E
Sbjct: 221 YCVFDLETTGLSSRFDHIIEFGGQIVKDRACI-KSLQMFIKPPVA-LSAFTTELTGITEE 278

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+  SF+    E  DF  +  +  +AHNA FD  F+N EL RI + P+    I     
Sbjct: 279 HMKNAKSFADSIDEILDFIGD--SILVAHNATFDYNFLNDELARIGRKPIMNPVIDTLDL 336

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187
               +       L  + + YGI       H A  D+ +L+  Y+ M+     I N     
Sbjct: 337 ARSMQADRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLAQTYMNMLNDLKHIKNLQELQ 396

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           +        K  V ++++L ++      + +     H K +    K+ 
Sbjct: 397 DMQTAESFRKVRVKHVTVLAKNMAGLKELFELVTLSHTKYLAYSSKST 444


>gi|330723726|gb|AEC46096.1| DNA polymerase III PolC [Mycoplasma hyorhinis MCLD]
          Length = 1457

 Score = 71.5 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 76/206 (36%), Gaps = 3/206 (1%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFD+ETTGL  K + +IE GAV   +     +  +  + P  +   P  +       
Sbjct: 403 RYVVFDLETTGLSPKFNELIEFGAVVWQNGQTLEKH-EFLIKPKEKI--PSYISDLTGIT 459

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + +  + S   +        QN+  +AHNA+FD G +    + +    L+   I    
Sbjct: 460 NQMIENEAISVEEAAIKIKQIFQNSILVAHNARFDYGCLVEFFKELELYELEQPVIDTLE 519

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                     R++L  L K   I       H    D+ +L+ V+ + ++   + N     
Sbjct: 520 VSRFLAPTQKRHNLKELAKNASIHYDETESHRGGYDAEVLAKVWDQFLIKLIEKNIKDLN 579

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF 213
           + ++               K  + + 
Sbjct: 580 SLNQVGSNILDFKRRGLFSKEIRVIV 605


>gi|257867744|ref|ZP_05647397.1| DNA polymerase III [Enterococcus casseliflavus EC30]
 gi|257874072|ref|ZP_05653725.1| DNA polymerase III [Enterococcus casseliflavus EC10]
 gi|257801827|gb|EEV30730.1| DNA polymerase III [Enterococcus casseliflavus EC30]
 gi|257808236|gb|EEV37058.1| DNA polymerase III [Enterococcus casseliflavus EC10]
          Length = 918

 Score = 71.5 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 6/174 (3%)

Query: 7   MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+ I  V D+ETTG DS  DRII+ G V + D    NR F   + P+ R+ S +  +L  
Sbjct: 1   MKPIYAVVDLETTGTDSTIDRIIQFGCVLVQDGKIINR-FAADINPD-RRISKQIQRLTH 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT++ +   P F  I    ++     N  ++AHN  FD  F++ E  R    PL    I 
Sbjct: 59  ITNQQVSKAPYFEDIADTIYNLL--SNTIFVAHNIYFDYHFLSNEFVRCGLPPLSIPGID 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                       S   L  L    G    +  +  +  +      +YI+ ++  
Sbjct: 117 TVELAQVFLPTESSFRLGDLADSIGFRHDNPHQADSDAEVTAALFLYIEAIMRQ 170


>gi|76788222|ref|YP_329936.1| DNA polymerase III epsilon subunit family exonuclease
           [Streptococcus agalactiae A909]
 gi|77412263|ref|ZP_00788580.1| Unknown [Streptococcus agalactiae CJB111]
 gi|77414710|ref|ZP_00790841.1| Unknown [Streptococcus agalactiae 515]
 gi|76563279|gb|ABA45863.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Streptococcus agalactiae A909]
 gi|77159237|gb|EAO70417.1| Unknown [Streptococcus agalactiae 515]
 gi|77161697|gb|EAO72691.1| Unknown [Streptococcus agalactiae CJB111]
          Length = 604

 Score = 71.5 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 6/212 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R I FDIETTGL+S+ DRI+E+GAV   +      +++  +       S +  +
Sbjct: 46  INFIKNRFIAFDIETTGLNSQQDRIVEVGAVLFENGKVV-DSYESLVN-AKVNISADVTR 103

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAE-LQRINKDP 117
           ++ IT+  +K+ PS + ++ E  +F  +         AHNAKFD+GF+     +      
Sbjct: 104 INNITNRMIKNAPSENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLGYNGE 163

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +     +       +   + + +  +         SHR+K  A++  ++L+ ++  +   
Sbjct: 164 IKYLDTLSLSRKNVKGLRNYKQNTVAEYFNLQNKNSHRAKSDAIICGNILTKLFFIIENQ 223

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
            S+ +F  K N+    + E   V    + +R 
Sbjct: 224 KSRKSFSSKNNKISPEELEVCAVIQNIIFERK 255


>gi|291295885|ref|YP_003507283.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279]
 gi|290470844|gb|ADD28263.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279]
          Length = 267

 Score = 71.5 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 7/165 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTGL   +  IIE+  + L +  +T   F+  + P G    P   +L GI  + 
Sbjct: 90  VVLDIETTGLSPTDHEIIELALIRLENGRRT--VFERLVNP-GVLIPPFISRLTGIRSQD 146

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D     ++  E W      NA  I  NA FD+GF+    +R+       + ++DT+  
Sbjct: 147 VRDAADIYTVLEEAWPLL--DNATLIIQNASFDLGFLQPRFKRLGYR--LDNPVVDTIHW 202

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           AR+  P                    ++H A+ D      V  +M
Sbjct: 203 ARKALPGLTKRGLDSLAWAFDLGPIPARHRAMGDVETTLQVAHEM 247


>gi|224283886|ref|ZP_03647208.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum NCIMB
           41171]
 gi|311064734|ref|YP_003971459.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum PRL2010]
 gi|313141038|ref|ZP_07803231.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB
           41171]
 gi|310867053|gb|ADP36422.1| DnaQ DNA polymerase III alpha subunit [Bifidobacterium bifidum
           PRL2010]
 gi|313133548|gb|EFR51165.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB
           41171]
          Length = 180

 Score = 71.5 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 5/172 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG+    D IIE GAV+++D      T+Q  + P  R  +P   +L GIT +
Sbjct: 11  YVVLDLETTGVSWYRDTIIEFGAVKVVDRKPV-DTYQQLVNP-MRNLNPFITQLTGITPD 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P+  ++  +F  +  +       HN             +       P+RIIDTL 
Sbjct: 69  MLEPAPTLDTVLPDFLRWCGDDAMI--GHNIMQFDIKFIDLAAQRILHHAVPNRIIDTLQ 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           ++R  +P        +       I+   +H AL D+      +  M     +
Sbjct: 127 MSRSMYPQYNRHRL-VDLIQRFDIADVEEHRALSDAEQTQMCFEYMRDEQRR 177


>gi|167750041|ref|ZP_02422168.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702]
 gi|167657062|gb|EDS01192.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702]
          Length = 1605

 Score = 71.5 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 54/98 (55%), Gaps = 4/98 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFDIETTGL   N+RI EIGAV+L +     R F  F+ P          +L GITD+ 
Sbjct: 592 IVFDIETTGLHPANERITEIGAVKLRNMEIVER-FSTFVNP-MMPIPSNITELTGITDDM 649

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           + D P+     S+F  F    N+   AHNAKFDV FI 
Sbjct: 650 VADAPTEDVAVSDFMAFC--GNSPVCAHNAKFDVSFIR 685


>gi|317128618|ref|YP_004094900.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473566|gb|ADU30169.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 922

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 11/205 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++ D+ETTG+   K DRII+I  V +      +R F  ++ P  R   P    L  I 
Sbjct: 3   RFVIVDVETTGVSFIKGDRIIQIAFVVIEGKKIIDR-FNSYVNP-MRDIPPFIRSLTNIN 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  +KD P+F  +        +       AHN  FD+ FIN EL  +    L    +IDT
Sbjct: 61  DNEVKDAPTFDLVAPRLLQALDGAFFV--AHNVDFDLSFINEELHALGYTGL-SGPVIDT 117

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG----SQIN 182
           + +++  +P++     S      + ++H   H A  D+   + +++++M        Q  
Sbjct: 118 VELSKIAYPTADGFRLSQLSES-LHMNHDQPHRADSDAEATALIFLEIMDKLYHLPKQTL 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLK 207
                   +   +    +    + K
Sbjct: 177 IELNNLSTKLKSDIGSIIQEWIMEK 201


>gi|317497265|ref|ZP_07955589.1| exonuclease [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895510|gb|EFV17668.1| exonuclease [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 235

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 68/211 (32%), Gaps = 8/211 (3%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+  + FD+ETTGL   +D+IIEIGAV++ D   + + +   + P    +      ++  
Sbjct: 1   MKDYVAFDLETTGLSPDSDQIIEIGAVKIRDGKISGK-YNCIIHPEIEVSD---FIINLT 56

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                  +                 +   + HN  FD  F+                   
Sbjct: 57  GISRDMLRKGIPLKEGVEEFLEFSGDLPVLGHNVMFDYKFMKMAAASFKYPFEKTGVDTL 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            ++        ++               +++ H A  D+   + V+ +M          F
Sbjct: 117 KVARKLLTGLENKKLET---LCAHYHYVNQAAHRAYDDALATAVVFEQMKKEFPTEEEIF 173

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           +  + +F  ++++          +  +    
Sbjct: 174 QPQQLQFKVKKERPATPKQKKYLENLMKYHA 204


>gi|310287853|ref|YP_003939111.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum S17]
 gi|309251789|gb|ADO53537.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum S17]
          Length = 180

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 5/172 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG+    D IIE GAV+++D      T+Q  + P  R  +P   +L GIT +
Sbjct: 11  YVVLDLETTGVSWYRDTIIEFGAVKVVDRKPV-DTYQQLVNP-MRNLNPFITQLTGITPD 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P+  ++  +F  +  +       HN             +       P+RIIDTL 
Sbjct: 69  MLEPAPTLDTVLPDFLRWCGDDAMI--GHNIMRFDIKFIDLAAQRILHHAVPNRIIDTLQ 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           ++R  +P        +       I+   +H AL D+      +  M     +
Sbjct: 127 MSRSMYPQYNRHRL-VDLIQRFDIADVEEHRALSDAEQTQMCFEYMRDEQRR 177


>gi|239831040|ref|ZP_04679369.1| exonuclease [Ochrobactrum intermedium LMG 3301]
 gi|239823307|gb|EEQ94875.1| exonuclease [Ochrobactrum intermedium LMG 3301]
          Length = 214

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 83/215 (38%), Gaps = 21/215 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   K R IV D ETTGL    DRI+ IGAV++      +++  +   P  + + P+A  
Sbjct: 9   VHTRKKRVIVVDTETTGLLP-YDRIVTIGAVKIEGDDFLHQSLHLIFDP-RKDSHPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  FS + +    +  +   E +AHNA FD+ ++  E ++   D L   
Sbjct: 67  VHGYDNWMTRYQDLFSDLAAPIRKW-FDWADEIVAHNADFDMRYVQREFRKAEVDMLPHP 125

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                          S    +  C           +HGAL D++L + +Y+        +
Sbjct: 126 VFCTMERSREIWSGQSAKLDD--CLARIGLSRIGKRHGALEDAYLTAGLYLHQRGIKKSL 183

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                             V + S  K  KP   R 
Sbjct: 184 P----------------KVNSWSPPKNLKPYPPRP 202


>gi|225850145|ref|YP_002730379.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
 gi|225645024|gb|ACO03210.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
          Length = 205

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 5/196 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG + +++ IIEI A++       +R +   + P          KL GIT   +
Sbjct: 13  IIDIETTGFNPESNDIIEIAAIKYQGNIILDRFW-SLIKPEIELIPEHISKLTGITTAMV 71

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D+P+   +  +F +F   +N   + HN +FD+ F+N + + I    +    I       
Sbjct: 72  IDQPTVDKVLPDFLNFI--ENTILVGHNIRFDLAFLNKKAKEILNKTIKNPFICTDHLAR 129

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           +         L S+ + + I      +H A+ D+ +  +++IKM+      N     +  
Sbjct: 130 KILSDIDSKSLASIAQHFNIPF--SRQHRAMYDAEVNLEIFIKMLRFLEDYNVFKVMDII 187

Query: 191 RFFKEEKKTVPNISLL 206
           +  + +K         
Sbjct: 188 KLSEGKKVNYREKRRR 203


>gi|312143668|ref|YP_003995114.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904319|gb|ADQ14760.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
          Length = 1401

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 7/197 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL+     IIEIGAV++    K    F+ F+    +    +  ++ GI   
Sbjct: 388 FVVFDLETTGLNPSQHDIIEIGAVKIKAGEKIAE-FETFID-IDKNVPAKITEITGINTS 445

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P   +    F DF  +     +AHNA FD GF+   LQ++  +  + + +     
Sbjct: 446 MLTGAPKLKAAIERFIDFIGD--GVLVAHNADFDYGFLRTALQKLEINRKEYTVLDTLAL 503

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGFKT 187
                  S    LN+L + +  ++     H AL D+   +++  K++ +     N   K 
Sbjct: 504 SRALIKDSKNYKLNTLAEYF--SVELDDHHRALADADATAEILKKLLAIIEKDDNSNLKD 561

Query: 188 NEDRFFKEEKKTVPNIS 204
             D   K + K +    
Sbjct: 562 INDYISKIDWKDLRPFH 578


>gi|256956660|ref|ZP_05560831.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|256947156|gb|EEU63788.1| DNA polymerase III [Enterococcus faecalis DS5]
          Length = 1439

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 414 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 469

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 470 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 529

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 530 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 587

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 588 DLNRHIGEGDSYKRARPF 605


>gi|256763072|ref|ZP_05503652.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256963554|ref|ZP_05567725.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|256684323|gb|EEU24018.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256954050|gb|EEU70682.1| DNA polymerase III [Enterococcus faecalis HIP11704]
          Length = 1439

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 414 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 469

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 470 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 529

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 530 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 587

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 588 DLNRHIGEGDSYKRARPF 605


>gi|91775906|ref|YP_545662.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
 gi|91709893|gb|ABE49821.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
          Length = 462

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 5/158 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG     DRI EIG +   +  +  R +Q  + P     SP    + GI++ 
Sbjct: 5   YVLLDLETTGATPVTDRITEIGLIRYENGIEVKR-WQTLVNPEMH-ISPFITSITGISNA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P F  + +E     +   A   AHN +FD GF+  E +R++   L  + +     
Sbjct: 63  MVKDAPLFKDVANELLSHLHG--AVLCAHNVRFDYGFLKNEFRRLDIT-LRQNVLCTVKL 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             R       + L+++  R+GI  + R +    ++   
Sbjct: 120 SRRLYPEYKSHGLDAIIARHGIACAARHRAMGDVEVMA 157


>gi|332995649|gb|AEF05704.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2]
          Length = 710

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 6/174 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG ++  +RI EIG V+++       T+Q  + P  R+      +L GI+D+
Sbjct: 543 YVVVDIETTGGNNSYNRITEIGMVKIVAGEVV-DTYQTLINPQ-RRIPATITRLTGISDD 600

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P F  +            A ++AHN  FD GFI    +    +       + T+ 
Sbjct: 601 MVADAPLFVEVAERIAS--FTDEAVFVAHNVNFDYGFIK--QEFARLELPFKRPKLCTVR 656

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
             R+ +P   +   +   R+      +            + + I + +    I 
Sbjct: 657 EMRKVNPGLPSYSLANLTRHFDIKMEQHHRALSDAKAAAALLDIILTMSAETIK 710


>gi|167767436|ref|ZP_02439489.1| hypothetical protein CLOSS21_01955 [Clostridium sp. SS2/1]
 gi|167710728|gb|EDS21307.1| hypothetical protein CLOSS21_01955 [Clostridium sp. SS2/1]
 gi|291558729|emb|CBL37529.1| exonuclease, DNA polymerase III, epsilon subunit family
           [butyrate-producing bacterium SSC/2]
          Length = 235

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 66/195 (33%), Gaps = 8/195 (4%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+  + FD+ETTGL   +D+IIEIGAV++ D   + + +   + P    +      ++  
Sbjct: 1   MKDYVAFDLETTGLSPDSDQIIEIGAVKIRDGKISGK-YNCIIHPEIEVSD---FIINLT 56

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                  +                 +   + HN  FD  F+                   
Sbjct: 57  GISRDMLRKGIPLKEGVEEFLEFSGDLPILGHNVMFDYKFMKMAAASFKYPFEKTGVDTL 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            ++        ++               +++ H A  D+   + V+ +M          F
Sbjct: 117 KVARKLLTGLENKKLET---LCAHYHYVNQAAHRAYDDALATAVVFEQMKKEFPTEEEIF 173

Query: 186 KTNEDRFFKEEKKTV 200
           +  + +F  ++++  
Sbjct: 174 QPQQLQFKVKKERPA 188


>gi|213691637|ref|YP_002322223.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523098|gb|ACJ51845.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 211

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 74/212 (34%), Gaps = 15/212 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG    +  I EIGAV +      ++ FQ  + P  R    +   L GITD 
Sbjct: 10  YVALDLETTGFYPNSCAITEIGAVRVRKGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            + D      +   F  +             + HN  FD+ F++   + I       +  
Sbjct: 68  MVADLDPIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADY 127

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                          + L  L  R+GI      +H AL D+      +  M       ++
Sbjct: 128 DTMQISRALFPAQRHHRLADLIVRFGIA--DNEEHRALSDAIQTQQCFEWM------RHY 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
             + +E    + ++    N + +   + +  R
Sbjct: 180 VTEHHESEAIRWKQAPARNSTEILHQQLVVKR 211


>gi|265989936|ref|ZP_06102493.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1]
 gi|263000605|gb|EEZ13295.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1]
          Length = 233

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 18  IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +      E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 76  VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 134

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                    R       +     C           +HGAL D++L + +Y+        +
Sbjct: 135 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQDVAKPL 192

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                    +  K   +        +  K     ++ 
Sbjct: 193 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 229


>gi|46190621|ref|ZP_00121275.2| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bifidobacterium longum DJO10A]
          Length = 211

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 15/212 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG    +  I EIGAV + +    ++ FQ  + P  R    +   L GITD 
Sbjct: 10  YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            + D      +   F  +             + HN  FD+ F++   + I       +  
Sbjct: 68  MVADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADY 127

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                          + L  L  R+GI      +H AL D+      +  M       ++
Sbjct: 128 DTMQISRALFPAQRHHRLADLIVRFGIA--DNEEHRALSDAIQTQQCFEWM------RHY 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
             + +E    + ++    N + +   + +  R
Sbjct: 180 VTEHHESEAIRWKQAPAKNSAEILHQQLVVKR 211


>gi|78044072|ref|YP_360592.1| DNA polymerase III subunit alpha [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996187|gb|ABB15086.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 1407

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 6/174 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD ET+GL S+ D IIEIGAV++ D  +   TF V + P    ++  +       D  
Sbjct: 395 VAFDFETSGLSSQRDEIIEIGAVKIFDG-EIKETFSVLIRPQKPISAKISELTGITNDLL 453

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            K+   F     +F  F +   +  +AHNA FD GF+   L+R+  +       +     
Sbjct: 454 EKEGLDFGEAIEKFLRFCDG--SILLAHNAAFDYGFLRQALKRLGHE---RKFSVVDNLA 508

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             R       +         + +S  + H AL DS+ L++V++K++    +   
Sbjct: 509 LVRILFPELKNHKLKTITEHLEVSLNNHHRALADSYALAEVFLKLLPRLFERGL 562


>gi|307243879|ref|ZP_07526004.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678]
 gi|306492701|gb|EFM64729.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678]
          Length = 172

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 7/166 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+ETTGL     D IIEIG  E+       R +   + PNG   S      +   D
Sbjct: 8   YVVVDLETTGLSPFNGDEIIEIGVTEIKGDR-IYRNYSRLVKPNGFIPSVITEITNITND 66

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                 P    +   F  F  ++     AHNAKFD+GF+N  L+++N DP+D       +
Sbjct: 67  MVQDALP-LEDVLPNFRKFIGDRTII--AHNAKFDIGFLNYYLEKMNLDPIDKYICTMEM 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +++      L + C  YGI   + + H A  D+   + +++K
Sbjct: 124 LKKNKEYKGKNKKLQTACDYYGIL--NENAHRADSDTLATAKLFMK 167


>gi|307271493|ref|ZP_07552765.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
 gi|306511765|gb|EFM80763.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
          Length = 1451

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 600 DLNRHIGEGDSYKRARPF 617


>gi|255972152|ref|ZP_05422738.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|257079586|ref|ZP_05573947.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|257082034|ref|ZP_05576395.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|257084659|ref|ZP_05579020.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257416589|ref|ZP_05593583.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
 gi|255963170|gb|EET95646.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|256987616|gb|EEU74918.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|256990064|gb|EEU77366.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|256992689|gb|EEU79991.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257158417|gb|EEU88377.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
          Length = 1439

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 414 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 469

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 470 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 529

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 530 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 587

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 588 DLNRHIGEGDSYKRARPF 605


>gi|229545206|ref|ZP_04433931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300860665|ref|ZP_07106752.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis TUSoD Ef11]
 gi|229309751|gb|EEN75738.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300849704|gb|EFK77454.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis TUSoD Ef11]
 gi|315035641|gb|EFT47573.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0027]
          Length = 1451

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 600 DLNRHIGEGDSYKRARPF 617


>gi|257087409|ref|ZP_05581770.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|256995439|gb|EEU82741.1| DNA polymerase III [Enterococcus faecalis D6]
          Length = 1439

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 414 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 469

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 470 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 529

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 530 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 587

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 588 DLNRHIGEGDSYKRARPF 605


>gi|256961318|ref|ZP_05565489.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|256951814|gb|EEU68446.1| DNA polymerase III [Enterococcus faecalis Merz96]
          Length = 1439

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 414 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 469

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 470 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 529

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 530 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 587

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 588 DLNRHIGEGDSYKRARPF 605


>gi|255975216|ref|ZP_05425802.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|255968088|gb|EET98710.1| DNA polymerase III [Enterococcus faecalis T2]
          Length = 1439

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 414 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 469

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 470 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 529

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 530 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 587

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 588 DLNRHIGEGDSYKRARPF 605


>gi|257068588|ref|YP_003154843.1| hypothetical protein Bfae_14220 [Brachybacterium faecium DSM 4810]
 gi|256559406|gb|ACU85253.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Brachybacterium faecium DSM 4810]
          Length = 551

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 72/205 (35%), Gaps = 4/205 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG D   D I EIGAV++         F+ F+ P  R        L GITD  
Sbjct: 22  VVVDLETTGTDPAADAITEIGAVKVRGGEVLGE-FRTFVDPE-RPIPAYIASLTGITDAA 79

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + PS  ++   F D     +A  +AHNA+FD+GF++A+          P  +      
Sbjct: 80  VAEAPSIRTVLPMFLD--FAGDAALVAHNARFDIGFLSAQAAACEITWPRPRVLDTLALA 137

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
                     D         +       H AL D+    DV   ++            + 
Sbjct: 138 RTVFRRDEVRDHRLSTLARHVGAGITPDHRALSDARATVDVLHAIIERLGPSGASTLEDL 197

Query: 190 DRFFKEEKKTVPNISLLKRDKPLFT 214
               +           L  D P   
Sbjct: 198 GTAHRRASPVQLRKKHLAEDVPPVP 222


>gi|187927567|ref|YP_001898054.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12J]
 gi|187724457|gb|ACD25622.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
          12J]
          Length = 216

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +  D ETTGLD + D II IGAV ++ +   T++  ++ + P G          
Sbjct: 38 WVALDCETTGLDVRTDEIISIGAVRIVGNRILTSQRLELLIRPQGEMRPESICVH 92


>gi|110004377|emb|CAK98715.1| probable dna polymerase III alpha subunit protein [Spiroplasma
           citri]
          Length = 1453

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 7/224 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++FD+ETTGL S  D IIE GAV +   S   +       P+ +  S    +L GITD
Sbjct: 409 KYVIFDLETTGLSSGYDEIIEFGAVIMDGISGERQIINHLFKPSVK-LSSFTTELTGITD 467

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L DKP+F     +  ++F +  A  IAHNA+FD+GFI + L++  +  ++ + I    
Sbjct: 468 ELLADKPTFIESIDQILEYFKD--AILIAHNAEFDLGFIQSWLKKAGRSEINNTVIDTLQ 525

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG-SQINFGFK 186
                +       L ++ + Y +  +    H    D+ +L+D+Y   +    +     F 
Sbjct: 526 LSRILEPHLKNYRLGTIARCYSVIYNEEVAHRGDYDAIVLTDIYEHQLRKMINNYGIEFD 585

Query: 187 TNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
            + +        +K    ++++L +++     + K     H K 
Sbjct: 586 NDIENIHDPAVYKKLRPKHMAILAKNQAGLLELFKLITSAHTKY 629


>gi|293383603|ref|ZP_06629513.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|293387284|ref|ZP_06631841.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|312906153|ref|ZP_07765165.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|312909498|ref|ZP_07768353.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis DAPTO 516]
 gi|291079115|gb|EFE16479.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|291083321|gb|EFE20284.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|310627799|gb|EFQ11082.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|311290171|gb|EFQ68727.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis DAPTO 516]
          Length = 1451

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 600 DLNRHIGEGDSYKRARPF 617


>gi|257419836|ref|ZP_05596830.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|257161664|gb|EEU91624.1| DNA polymerase III [Enterococcus faecalis T11]
          Length = 1439

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 414 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 469

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 470 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 529

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 530 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 587

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 588 DLNRHIGEGDSYKRARPF 605


>gi|257090543|ref|ZP_05584904.1| DNA polymerase III polC [Enterococcus faecalis CH188]
 gi|256999355|gb|EEU85875.1| DNA polymerase III polC [Enterococcus faecalis CH188]
          Length = 1439

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 414 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 469

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 470 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 529

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 530 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 587

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 588 DLNRHIGEGDSYKRARPF 605


>gi|229549448|ref|ZP_04438173.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256853720|ref|ZP_05559085.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257421977|ref|ZP_05598967.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294779462|ref|ZP_06744860.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis PC1.1]
 gi|307270863|ref|ZP_07552150.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|307277206|ref|ZP_07558310.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|307291051|ref|ZP_07570937.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|312953417|ref|ZP_07772257.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|229305685|gb|EEN71681.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256710663|gb|EEU25706.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257163801|gb|EEU93761.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294453468|gb|EFG21872.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis PC1.1]
 gi|306497900|gb|EFM67431.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|306506136|gb|EFM75302.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|306512776|gb|EFM81421.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|310628626|gb|EFQ11909.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|315030983|gb|EFT42915.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4000]
 gi|315146013|gb|EFT90029.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2141]
 gi|315146659|gb|EFT90675.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4244]
 gi|315152085|gb|EFT96101.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0031]
 gi|315155311|gb|EFT99327.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0043]
 gi|315159111|gb|EFU03128.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0312]
 gi|315161731|gb|EFU05748.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0645]
 gi|315166431|gb|EFU10448.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1341]
 gi|315173645|gb|EFU17662.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1346]
 gi|323481337|gb|ADX80776.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis 62]
 gi|327535664|gb|AEA94498.1| DNA polymerase III PolC [Enterococcus faecalis OG1RF]
 gi|329569948|gb|EGG51703.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467]
          Length = 1451

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 600 DLNRHIGEGDSYKRARPF 617


>gi|315025440|gb|EFT37372.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2137]
          Length = 1451

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 600 DLNRHIGEGDSYKRARPF 617


>gi|307285835|ref|ZP_07565969.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
 gi|306502596|gb|EFM71863.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
          Length = 1451

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 600 DLNRHIGEGDSYKRARPF 617


>gi|307287733|ref|ZP_07567776.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|306501471|gb|EFM70774.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|315032873|gb|EFT44805.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0017]
          Length = 1451

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 600 DLNRHIGEGDSYKRARPF 617


>gi|261416331|ref|YP_003250014.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372787|gb|ACX75532.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325547|gb|ADL24748.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 215

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 15/183 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNR---TFQVFLCPNGRKNSPEAL 60
           + + FD+ETTGL ++ D IIEIGA    VE+ +     +    F   + PN      EA 
Sbjct: 7   KFVAFDLETTGLVNRKDEIIEIGAVKFTVEVKNGRVVPKLISEFDTLVKPN-MLIPAEAT 65

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            ++ ITD+ +++ P       +F  F     +  +AHNA FD  F+    ++  +     
Sbjct: 66  NVNHITDKMVENAPPVGEALKQFTAF-CGPGSILLAHNANFDASFLRTAYEQNPQFTPGN 124

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYG------ITISHRSKHGALLDSHLLSDVYIKM 174
             +             + + L  +   +       +TI     H ++ D  +L +V++ +
Sbjct: 125 PVVDSLAISKTIMPELANHKLGFMANMFMKRGEISMTIDEEKMHRSVYDCEMLMEVFVAL 184

Query: 175 MVG 177
           +  
Sbjct: 185 LRR 187


>gi|169830753|ref|YP_001716735.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637597|gb|ACA59103.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 921

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 4/101 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGLD + D I+E+G V + D       F   + P  R        L G+ D 
Sbjct: 5   FVVLDLETTGLDPQADEIVEVGLVRVEDGKP-GAVFHALVRP-SRPLPARIKSLTGLDDA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
            L ++P +S +      F    N   + H+  FD+ F+   
Sbjct: 63  DLAERPDWSEVRPAVTAFL--GNEPVVGHHVHFDLAFLERH 101


>gi|21314372|gb|AAM46912.1|AF508325_1 DNA polymerase III C [Enterococcus faecalis]
          Length = 1439

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 414 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 469

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 470 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 529

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 530 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 587

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 588 DLNRHIGEGDSYKRARPF 605


>gi|315150171|gb|EFT94187.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0012]
          Length = 1451

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 600 DLNRHIGEGDSYKRARPF 617


>gi|315170319|gb|EFU14336.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1342]
          Length = 1451

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 600 DLNRHIGEGDSYKRARPF 617


>gi|315164832|gb|EFU08849.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1302]
          Length = 1451

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 600 DLNRHIGEGDSYKRARPF 617


>gi|312903703|ref|ZP_07762877.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|310632895|gb|EFQ16178.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|315578694|gb|EFU90885.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0630]
          Length = 1451

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 600 DLNRHIGEGDSYKRARPF 617


>gi|29376875|ref|NP_816029.1| DNA polymerase III PolC [Enterococcus faecalis V583]
 gi|227519898|ref|ZP_03949947.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227553915|ref|ZP_03983962.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|29344340|gb|AAO82099.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis V583]
 gi|227072692|gb|EEI10655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227176901|gb|EEI57873.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|315574385|gb|EFU86576.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309B]
 gi|315580141|gb|EFU92332.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309A]
          Length = 1451

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 600 DLNRHIGEGDSYKRARPF 617


>gi|312899805|ref|ZP_07759124.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
 gi|311293055|gb|EFQ71611.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
          Length = 1451

 Score = 70.7 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      ++     
Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    +          I     
Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K++G+       H A+ DS       +I +       +  F  
Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +R   E          
Sbjct: 600 DLNRHIGEGDSYKRARPF 617


>gi|229918731|ref|YP_002887377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Exiguobacterium sp. AT1b]
 gi|229470160|gb|ACQ71932.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium sp.
           AT1b]
          Length = 936

 Score = 70.7 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 7/176 (3%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            ++ D+ETTG   K  D +IE  AV + +     R +   + P  R   P   +L  I+D
Sbjct: 4   YVIVDLETTGHSVKSGDELIEFAAVVVQEGEVIER-YSTLIRP-SRPIPPFITQLTTISD 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + D P+F  +  + W   +     ++AHN  FD+ F+N  L++          I    
Sbjct: 62  EDVSDAPTFEDVIPDIWKMLDG--RVFVAHNVAFDLTFLNESLEQAGYLAFQGRAIDTVE 119

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                      + L +L   + +       H AL D+   ++++I+M+     +  
Sbjct: 120 LARILYPTLESHALEALSDTFDLVH--TDAHRALSDAEATAELFIRMLDRLRDLPM 173


>gi|189501071|ref|YP_001960541.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1]
 gi|189496512|gb|ACE05060.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1]
          Length = 180

 Score = 70.7 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 5/167 (2%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D+ETTGL   + DR+IE+ AV +++       F   +            K+HGIT
Sbjct: 12  RVVAVDVETTGLSPLRGDRVIEVAAVAIVNG-VIEEHFCCLIN-VNAPIPTVVQKIHGIT 69

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E L  +    +++ EF +F        IAHNA FD+ FI  ELQ +    L+ S+    
Sbjct: 70  PELLAGEKPPEAVWPEFLNFIGS--NILIAHNAPFDISFIRNELQLLGLSLLNGSQCTLA 127

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            S  +     S    N      G        H A  D+ L + ++  
Sbjct: 128 FSRKKFPQLKSHKLDNVARHVLGGMPKGIKLHRASGDALLTAMIWQA 174


>gi|291278558|ref|YP_003495393.1| hypothetical protein DEFDS_0125 [Deferribacter desulfuricans SSM1]
 gi|290753260|dbj|BAI79637.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 207

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 7/179 (3%)

Query: 3   RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEA 59
           + N++   VFDIE+TG++    DRI+EIGAV++      +    F V + P G     ++
Sbjct: 12  KINEVEYCVFDIESTGINPFDGDRIVEIGAVKIKPGFVIDYKNKFHVLVNP-GIPIPEDS 70

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGITDE + + P     +  F +    +    +AHNA+ D+ F+    +    D   
Sbjct: 71  QKIHGITDEDVANAPDECEAYYNFIE--FAKGCIPVAHNARKDMAFLRRISKEYLIDEPF 128

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS-HRSKHGALLDSHLLSDVYIKMMVG 177
              +       +    S  ++L++L ++Y + I  +  +H AL D+   S ++  MM  
Sbjct: 129 EFVLDTLALSKKVNVLSRYHNLDALIEKYNVRIKSNYKRHRALYDAEATSVIFKIMMND 187


>gi|167747300|ref|ZP_02419427.1| hypothetical protein ANACAC_02014 [Anaerostipes caccae DSM 14662]
 gi|167653278|gb|EDR97407.1| hypothetical protein ANACAC_02014 [Anaerostipes caccae DSM 14662]
          Length = 234

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 8/175 (4%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR  + FD+ETTGL  + D++IEIGAV++ +     + +   + P    +          
Sbjct: 1   MREYVAFDLETTGLSVEEDQVIEIGAVKVKNGKIAGK-YNCIIYPEREVSDFIIRLTGIT 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                   P    +          +    + HN  FD  F+    +R             
Sbjct: 60  RKMLDGGIPMREGVEGFLA---FSEGYPVLGHNLMFDYRFMKTAAKRFRYAFEKEGVDTL 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +    +   S+   +           +++ H A  D+   + V+  M     +
Sbjct: 117 RAARLLLRGLESKKLSS---LCEHYHYVNQAAHRAYDDALATAVVFESMKREFGE 168


>gi|308273149|emb|CBX29752.1| hypothetical protein N47_F14470 [uncultured Desulfobacterium sp.]
          Length = 182

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 10/183 (5%)

Query: 1   MIRKNKM-----RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           + R  KM     + ++FD+ETTG + +   RIIEIG V + + +  +  F+  +   G+ 
Sbjct: 4   LTRNIKMSSNSDKYVIFDVETTGFNPQHGARIIEIGVVHIENGNIISE-FKSLIN-CGKA 61

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            S +A K++GIT+E L  +P+   +F +F  F ++  +  +AHNA FD+ F+  EL R+ 
Sbjct: 62  VSKQAQKVNGITNEMLSGEPTPEEVFPDFLKFISK--STLVAHNAVFDISFLRYELSRLG 119

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +       +S        +   L            +   H AL D+ L + ++++M
Sbjct: 120 FVLSNDYLCTLNISRKIFPDLENHKLLTVAKHILVNLPKNLHLHRALDDARLTAMIWMEM 179

Query: 175 MVG 177
           M  
Sbjct: 180 MQR 182


>gi|291548851|emb|CBL25113.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Ruminococcus torques L2-14]
          Length = 231

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 11/174 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++      I FD+ETTGL  +   IIEIGA+++ +    +R F  F+ P+ +  +P   
Sbjct: 1   MLKS----YIAFDLETTGLSPQEHEIIEIGALKVREGKVVDR-FMEFVHPD-KPITPMIT 54

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +  IT++ +    S   +  +F  F  +     I HN  FD  F+            + 
Sbjct: 55  NITHITNDMVAGARSCPEVIHDFLSFCED--DVLIGHNVMFDYSFVK-CSAVREGLTFEK 111

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             I       +         L +LC  Y I   + + H A  D+   + +Y  +
Sbjct: 112 MGIDTLKIARKVHKDFESKSLGALCDYYHIE--NPAAHRAYYDALATAKLYQTL 163


>gi|317128725|ref|YP_004095007.1| exonuclease RNase T and DNA polymerase III [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473673|gb|ADU30276.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           cellulosilyticus DSM 2522]
          Length = 242

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 7/176 (3%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTG      DRI+ IG +++      +  TF   +  NG   S E  KL  IT+
Sbjct: 58  VVFDLETTGFYPNNGDRILSIGGIKVKGDKVIDSETFYSLINSNG-GVSEEITKLTNITE 116

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L + P  + +   F+ F +      +AH+A  +  F+      I K   +   I    
Sbjct: 117 KDLIEAPPINDVLQNFYTFMSG--CTLVAHHANHERSFMQHMTWSILKSRFEHRIIDTAF 174

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                +   +   L+  C  YGITI  + +H AL D+   + ++ + +     + F
Sbjct: 175 LTKIVEPNKNLVSLDECCDHYGITI--KKRHHALYDAIATAQLWTESVREIQNLGF 228


>gi|284991755|ref|YP_003410309.1| DNA polymerase III subunit epsilon [Geodermatophilus obscurus DSM
           43160]
 gi|284065000|gb|ADB75938.1| DNA polymerase III, epsilon subunit [Geodermatophilus obscurus DSM
           43160]
          Length = 609

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 8/170 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG   K+  I EIGAV++         FQ  + P G +  P    L GIT  
Sbjct: 39  FVVVDLETTGGSPKDSAITEIGAVKVRGGEVLGE-FQTLVDP-GCEIPPYISVLTGITST 96

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL----DPSRII 124
            +   P   ++   F +    + A  +AHNA FD+GF+ A                + ++
Sbjct: 97  MVAAAPRIGAVLPHFLE--FARGAVLVAHNAPFDLGFLKAACAANGIPWPATASVDTAVL 154

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               ++R + P+ +    +   R      HR+   A     +L  ++ ++
Sbjct: 155 ARRLLSRDEVPNCKLATLAPYFRTSTEPCHRALADARATVDVLHGLFERL 204


>gi|238062933|ref|ZP_04607642.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC
          39149]
 gi|237884744|gb|EEP73572.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC
          39149]
          Length = 286

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +V D+ETTGL S +DRI+EI  V +      +  +   + P GR   P  +       
Sbjct: 37 FVVVDVETTGLSSTSDRIVEIALVRIEGGRVVDE-WATLVDP-GRDPDPTFVHHITAEM 93


>gi|325953822|ref|YP_004237482.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
 gi|323436440|gb|ADX66904.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
          Length = 253

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 73/205 (35%), Gaps = 8/205 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG +   DRI+EI  V+   +  K  +T++  + P      PE   +HGI DE 
Sbjct: 9   FFDLETTGTNIAKDRIVEIAIVKAYTNGEKEIKTWR--VNPE-MPIPPETSLIHGIYDED 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P+F  I  +  +   + +      N           L+      L+  R ID   I
Sbjct: 66  VKDAPTFREIAPQIVELIKDSDLAGFNSNRFDIPLLAEEFLRNGIDFDLEKHRPIDVQVI 125

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +  P       +   ++       + H A  D+    +V +  +    ++    +   
Sbjct: 126 FHKMEP----RNLAAAYKFYCDKDLENAHSAEADTLATYEVLMAQIEKYEELKNDNQFLS 181

Query: 190 DRFFKEEKKTVPNISLLKRDKPLFT 214
           +   +          L+        
Sbjct: 182 EFSSQRRTVDFAGFILMNEQNEEVI 206


>gi|310642523|ref|YP_003947281.1| dnaq family exonuclease/ding family helicase [Paenibacillus
           polymyxa SC2]
 gi|309247473|gb|ADO57040.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
           polymyxa SC2]
          Length = 960

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 8/221 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  V D ETTG  S +D II++G   +   +  +R +  ++ P GR   P    L GIT
Sbjct: 1   MKFAVLDFETTGTQSADD-IIQVGLAIIDHDNSISRVYGSYVNP-GRSIPPFITGLTGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +KD P+   +  E     ++     + HN  FD  F+ + L R    P     +   
Sbjct: 59  DDDVKDAPALEEMMMELVPMLDD--VVLVGHNVAFDFNFLQSALDRCGYLPFSGRILDTM 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
             +       S   L  +   +G+       H A  D+   ++V++K +     +     
Sbjct: 117 DFLKIMFPSLSSYQLGFVSSEFGLAHDRP--HQADSDALATAEVFLKCLGELQALPLITI 174

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
                 F EE   +       R++     I  ++L++H   
Sbjct: 175 QRLSDLFAEEDSDLGWFLDGIREEKELDPI--QDLEKHQFF 213


>gi|325841946|ref|ZP_08167523.1| UvrD/REP helicase [Turicibacter sp. HGF1]
 gi|325489779|gb|EGC92134.1| UvrD/REP helicase [Turicibacter sp. HGF1]
          Length = 849

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 14/233 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R ++FD+E+TGLD   D +I+I A+EL++   T R+F+ F+ P+        +       
Sbjct: 494 RIVIFDVESTGLDVTQDEVIQIAAIELVNGEYT-RSFERFIKPSHSVGDSALVHG---FS 549

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +   ++    +           + A  I HN ++D+  +++++ R+     +     DTL
Sbjct: 550 DDYLNEHGEEAREVFLQFQAFVEGALLIGHNVQYDLKIVSSQMNRLGLMFENSMGYYDTL 609

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK----MMVGGSQINF 183
            I RR +P  +N        Y + +SH   H A+ D     DV +K    +M        
Sbjct: 610 DIVRRLYPDLKNHKLDTVSAY-VGVSHEPTHNAMDDILATKDVLVKSMDLLMTHHENRKK 668

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLF-----TRITKEELDEHDKTIQTL 231
             K  E   +   ++        +   P           + E + H ++I  L
Sbjct: 669 VMKFYEPHLWGAIQRLKEIQDCFETQPPHVAMKGLIDAFECEDEAHKQSIIEL 721


>gi|293375967|ref|ZP_06622227.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
 gi|292645404|gb|EFF63454.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
          Length = 849

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 14/233 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R ++FD+E+TGLD   D +I+I A+EL++   T R+F+ F+ P+        +       
Sbjct: 494 RIVIFDVESTGLDVTQDEVIQIAAIELVNGEYT-RSFERFIKPSHSVGDSALVHG---FS 549

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +   ++    +           + A  I HN ++D+  +++++ R+     +     DTL
Sbjct: 550 DDYLNEHGEEAREVFLQFQAFVEGALLIGHNVQYDLKIVSSQMNRLGLMFENSMGYYDTL 609

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK----MMVGGSQINF 183
            I RR +P  +N        Y + +SH   H A+ D     DV +K    +M        
Sbjct: 610 DIVRRLYPDLKNHKLDTVSAY-VGVSHEPTHNAMDDILATKDVLVKSMDLLMTHHENRKK 668

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLF-----TRITKEELDEHDKTIQTL 231
             K  E   +   ++        +   P           + E + H ++I  L
Sbjct: 669 VMKFYEPHLWGAIQRLKEIQDCFETQPPHVAMKGLIDAFECEDEAHKQSIIEL 721


>gi|222099149|ref|YP_002533717.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM
           4359]
 gi|281411717|ref|YP_003345796.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila
           RKU-10]
 gi|221571539|gb|ACM22351.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM
           4359]
 gi|281372820|gb|ADA66382.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila
           RKU-10]
          Length = 186

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 9/176 (5%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           V D ETTG D    DRIIEI AV +      +NR F   + P+ R       K+HGI++E
Sbjct: 10  VVDTETTGTDPFGGDRIIEIAAVPVFKGKIFSNRAFHSLVNPHVR-IPALIQKVHGISNE 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P   +++  F D+        + HNA FD+ F++   +     PL  + I     
Sbjct: 69  EVEEAPDMGTVYERFRDYVKG--TVLVFHNANFDLTFLDMMAKETRNFPLTNAYIDTLDI 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                     + L  LC++ GI       H AL D+ + + V+++++    +    
Sbjct: 127 SQEVF--GRPHSLKWLCEKLGIRDKIE--HRALSDALVTAKVFVRLVKLLGEHKVD 178


>gi|294811879|ref|ZP_06770522.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|326440385|ref|ZP_08215119.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|294324478|gb|EFG06121.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 334

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 8/163 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+      L    +    +   + P      P  + +HG+T +
Sbjct: 20  YAVVDVETTGL-ARDDRIVSAAVYRLDARGEVEDHWYTLVNPER---DPGPVWIHGLTSD 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  I  EF    +      +AHNA FD   I  E  R  +      R+     
Sbjct: 76  VLAGAPLFQDIADEFSQRLDG--RVLVAHNAMFDWSMIAREYARARRTAPTRQRLCTIAL 133

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               + P   + L SL   +G+    R  H AL D+ +L++ +
Sbjct: 134 AKELRLPLPNHKLESLAAHFGVV--QRQAHHALDDARVLAEAF 174


>gi|225018549|ref|ZP_03707741.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum
           DSM 5476]
 gi|224948681|gb|EEG29890.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum
           DSM 5476]
          Length = 319

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 66/172 (38%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG D   D IIE+GA+ + +      +F     P  R      ++L GI++E
Sbjct: 22  YVVIDLETTGYDPHRDEIIELGALRIHEGEVV-ESFSSLTKPQ-RDLDDYIIQLTGISNE 79

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P  S +F  + DF  +  +  + HN  FDV FI     + +      +  +  L 
Sbjct: 80  MLASAPELSDVFPRYLDFIGD--SIVVGHNVHFDVNFIYDTCIKESLKLF--TNDLVDLL 135

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              RK                  I     H +L D     + + K  +   +
Sbjct: 136 WLSRKLLPDLTSHKLCRVSSHFNICVEGMHRSLFDCKTTFECFEKCRILAKE 187


>gi|317471044|ref|ZP_07930419.1| exonuclease [Anaerostipes sp. 3_2_56FAA]
 gi|316901485|gb|EFV23424.1| exonuclease [Anaerostipes sp. 3_2_56FAA]
          Length = 234

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 8/175 (4%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR  + FD+ETTGL  + D++IEIGAV++ +     + +   + P    +          
Sbjct: 1   MREYVAFDLETTGLSVEEDQVIEIGAVKVKNGKIAGK-YNCIIYPEREVSDFIIRLTGIT 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                   P    +          +    + HN  FD  F+    +R             
Sbjct: 60  RKMLDGGIPMREGVEGFLA---FSEGYPVLGHNLMFDYRFMKTAAKRFRYAFEKEGVDTL 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +    +   S+   +           +++ H A  D+   + V+  M     +
Sbjct: 117 RAARLLLRGLESKKLSS---LCEHYHYVNQAAHRAYDDALATAVVFESMKREFGE 168


>gi|325571052|ref|ZP_08146624.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC
           12755]
 gi|325156137|gb|EGC68323.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC
           12755]
          Length = 918

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 6/169 (3%)

Query: 7   MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+ I  V D+ETTG DS  DRII+ G V + D    NR F   + P+ R+ S +  +L  
Sbjct: 1   MKPIYAVVDLETTGTDSTIDRIIQFGCVLVQDGKIINR-FAADINPD-RRISKQIQRLTH 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT++ +   P F  +    ++     N  ++AHN  FD  F++ E  R    PL    I 
Sbjct: 59  ITNQQVSKAPYFEDVADTIYNLL--SNTIFVAHNIYFDYHFLSNEFVRCGLPPLSLPGID 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                       S   L  L    G    +  +  +  +      +YI+
Sbjct: 117 TVELAQVFLPTESSFRLGDLADSIGFRHDNPHQADSDAEVTAALFLYIE 165


>gi|119900237|ref|YP_935450.1| putative DNA-directed polymerase III [Azoarcus sp. BH72]
 gi|119672650|emb|CAL96564.1| putative DNA-directed polymerase III [Azoarcus sp. BH72]
          Length = 474

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 7/163 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R ++ D+ETTG     DRI EI  + +       R ++  + P G    P    + GI D
Sbjct: 6   RYVLVDLETTGAHPLRDRITEIAILRIERGQLVQR-WESLINP-GVPIPPTIQGVTGIDD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P F+++        ++    ++AHNA+FD GF+      + ++   P      L
Sbjct: 64  TMVAGAPDFAAVADTVAALLDD--CVFVAHNARFDYGFLKTAYAALGREFDAPVLCTVKL 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           S A       R+ L+++ +R+G+     ++H A+ D+ +L   
Sbjct: 122 SRA-LYPDHHRHGLDAIIERHGLAC--GARHRAMGDTEVLWQF 161


>gi|15616303|ref|NP_244608.1| hypothetical protein BH3741 [Bacillus halodurans C-125]
 gi|10176365|dbj|BAB07460.1| BH3741 [Bacillus halodurans C-125]
          Length = 219

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 5/171 (2%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           VFD ETTG      DR+IE+ AV +     T+ TFQ ++ P  R    E  +L GI+++ 
Sbjct: 29  VFDTETTGFAVGAGDRLIEVAAVHVEGLEVTDFTFQTYVNPE-RNIPAEIEELTGISEDK 87

Query: 70  LKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +K+ P+       F+ F     +A W+ H A FDV  +  ELQR       P        
Sbjct: 88  VKNAPASLPAIESFFRFVEQSGSAAWVGHYASFDVTVLKKELQRYQFSLNVPLLFDTLDL 147

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           I          DL    K++G       +H AL D+   + ++ +++    
Sbjct: 148 IGYISPSKDMRDLEVYAKQFGT--YIYERHQALGDALTTAHLFCELLRHLE 196


>gi|193215454|ref|YP_001996653.1| DNA polymerase III subunit epsilon [Chloroherpeton thalassium
          ATCC 35110]
 gi|193088931|gb|ACF14206.1| DNA polymerase III, epsilon subunit [Chloroherpeton thalassium
          ATCC 35110]
          Length = 229

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN 51
          R +VFD ETTGLD K D+II IGAV + D+  +   +F+  +   
Sbjct: 43 RFVVFDTETTGLDVKKDKIISIGAVAISDFAIQVADSFETLIRQE 87


>gi|332983437|ref|YP_004464878.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1
           BON]
 gi|332701115|gb|AEE98056.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1
           BON]
          Length = 296

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 6/174 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGL+   D+I+EI AV+         ++   + P G      A K++ ITDE
Sbjct: 122 FVAIDLETTGLNPAIDKIVEIAAVKFKYGEII-DSYTTLINP-GIHIPSSASKINHITDE 179

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  S +     +F  +  +  + HNA FD+ F+     ++  D    +  IDTL 
Sbjct: 180 TVHGAPDLSEVLPNLLNFIGD--SILVMHNASFDLKFLKYHAAKLGYD--ISNPFIDTLP 235

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
             ++      N   +    Y    +  + H A  D+ +   V IK +      +
Sbjct: 236 TCKKLFTDFENYQLATVANYLKISTADTFHRACNDAEICGPVLIKCIDTAKNES 289


>gi|166032846|ref|ZP_02235675.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC
           27755]
 gi|166027203|gb|EDR45960.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC
           27755]
          Length = 232

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 14/211 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++      + FDIETTGL  +++ IIEIGA+++ +    +R F  F+ P      P   
Sbjct: 1   MLKS----YVAFDIETTGLSPEHNEIIEIGALKVREGKVVDR-FIRFIEPE-AGIPPMIT 54

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GIT++ ++   +   +  EF +F   +    I HN +FD  F+  + + +       
Sbjct: 55  QLTGITNDMVEGAGNCGEVLPEFLEFC--ERDTLIGHNVQFDFSFVKTKAKELGYTYDHM 112

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                 ++            L +LC+ Y I       H A  D+   + +Y  M     +
Sbjct: 113 GIDTLKIAKVVHAD-LPSRKLGALCEYYHIENVAA--HRAYHDALATAKLYQSMAHFYEE 169

Query: 181 IN---FGFKTNEDRFFKEEKKTVPNISLLKR 208
                F  +    +  K+E  T   I+ L R
Sbjct: 170 KEPKVFKPQPLAYKVKKKEPITAKQIAFLTR 200


>gi|127512799|ref|YP_001093996.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
 gi|126638094|gb|ABO23737.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
          Length = 204

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 7/172 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   + DR IEIGAV+L      +R FQ  + P G   S       GIT+ 
Sbjct: 7   VVLDFETTGLSPLQGDRAIEIGAVKLQQGVVVDR-FQQLMNP-GFAVSSFIADYTGITNA 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D PS  ++ ++F DF    +   +AHNA FD  F+ AE  RI+ +          L 
Sbjct: 65  MLSDAPSCETVMADFADFIQGCH--LVAHNASFDQKFLTAEFARIDLEQ-SQPFACSLLL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             R       + L +L    GI  +    H AL D+ +   +++ +    SQ
Sbjct: 122 ARRLFQAVPNHQLGTLVNYLGIA-NDGVFHRALNDAEVTGALWLALSDAVSQ 172


>gi|296133462|ref|YP_003640709.1| DnaQ family exonuclease/DinG family helicase [Thermincola sp. JR]
 gi|296032040|gb|ADG82808.1| DnaQ family exonuclease/DinG family helicase [Thermincola potens
           JR]
          Length = 994

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 9/174 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIETTGL+  +  IIE+ AV   +      TFQ  + P  +K   +  +L GI + 
Sbjct: 6   FVAVDIETTGLNPADSEIIEVAAVRFAEGRVL-ETFQSLVKPE-KKIPLKIQQLTGINES 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+ + +     +F ++  +  I HN  FD+ F+              +R  DTL 
Sbjct: 64  MVADAPACAEVTGMLAEFVHD--SIIIGHNIGFDLNFLQ-----HYHPVFIRARYYDTLP 116

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +AR   P +     +          + S H A  D+    +V+   +     + 
Sbjct: 117 LARLVWPKAHGYRLANLVEALKIQLNGSPHRAFHDALAAKEVFCLALEVLRGLG 170


>gi|330901691|gb|EGH33110.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 209

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 9/202 (4%)

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINA 108
             R++   A+ +HGIT+EFL  KP F+ +  EF++F           A +  F       
Sbjct: 2   PDRESDEGAIGVHGITNEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFAL 61

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
              +   D      ++DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+
Sbjct: 62  MGSQDRADITQHCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILA 121

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHD 225
           DVY+ M  G + ++     ++     E    + +        R      R ++ EL EH+
Sbjct: 122 DVYLAMTGGQTSLSLAGNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAEHE 181

Query: 226 KTIQTLGKNA----IWDRYISS 243
             + T+ K      +W + + +
Sbjct: 182 VRMSTIAKACGAPPLWVQMLEA 203


>gi|303235624|ref|ZP_07322231.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
 gi|302484071|gb|EFL47059.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
          Length = 893

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 3/115 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGIT 66
           +VFD ETTGLD   D IIEI A+ L +         +++    P   K       L+ I 
Sbjct: 513 VVFDTETTGLDVYEDDIIEIAAIRLHNGKPVGEPLDLYIETNRPILEKLGENENPLYPIY 572

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            E L          +    +    +A  + HN  +D   ++  L R  +D ++  
Sbjct: 573 HEKLAKGELLQPNEAFQLFWNYVGDATLLGHNVMYDRNILHHNLLRHAQDCMENH 627


>gi|313202457|ref|YP_004041115.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688]
 gi|312441773|gb|ADQ85879.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688]
          Length = 473

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 7/163 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG     DRI EI  +   +  + +R +Q  + P      P   +L GI D 
Sbjct: 5   YVLLDLETTGATPLVDRITEIALIRFENGQEVSR-WQTLVNPETA-IPPFIQRLTGIDDG 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F  +  E  D      A   AHN +FD GF+  E +RI  D     +++ T+ 
Sbjct: 63  MVATAPHFKEVAGELLDHLEG--AVLCAHNVRFDHGFLKNEFKRIGID--LRQKVLCTVK 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           ++R+ +P  R+                ++H A+ D   L D  
Sbjct: 119 LSRKLYPQHRSHSLDSIIERHSLQC-GARHRAMGDVVALVDFL 160


>gi|309779749|ref|ZP_07674506.1| DNA polymerase III [Ralstonia sp. 5_7_47FAA]
 gi|308921488|gb|EFP67128.1| DNA polymerase III [Ralstonia sp. 5_7_47FAA]
          Length = 216

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +  D ETTGL+ + D I+ IGAV ++ +   T+   ++ + P G          
Sbjct: 38 WVALDCETTGLNVRTDEIVSIGAVRIVGNRILTSEPLELLIRPQGEMRPESICVH 92


>gi|134093833|ref|YP_001098908.1| putative DNA polymerase/helicase [Herminiimonas arsenicoxydans]
 gi|133737736|emb|CAL60781.1| putative DNA-polymerase/ribonuclease/exonuclease [Herminiimonas
           arsenicoxydans]
          Length = 193

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 7/177 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D+ETTG +  NDRI EIG V +      +R +  F+ P GR        L GI+D
Sbjct: 6   KLIFIDLETTGANLINDRITEIGIVTVNADGDIDR-WSSFVNP-GRPIPSFIQDLTGISD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P+F ++     +   +    +IAHNA+FD GF++  L R              L
Sbjct: 64  RMVATAPTFETLADTVRERLED--GLFIAHNARFDYGFLHHALARAGHALSIDVLCTVKL 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           S          N    + +     +   ++H AL D+ LL  ++ K+        F 
Sbjct: 122 SRRFFPEEKRHNLDTLIARHG---LVPEARHRALADADLLWQLWEKLTASMPSEIFS 175


>gi|256043519|ref|ZP_05446446.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 224

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +      E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 125

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                    R       +     C           +HGAL D++L + +Y+        +
Sbjct: 126 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQDVAKPL 183

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                    +  K   +        +  K     ++ 
Sbjct: 184 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 220


>gi|255523926|ref|ZP_05390889.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296185167|ref|ZP_06853577.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           carboxidivorans P7]
 gi|255512357|gb|EET88634.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296050001|gb|EFG89425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           carboxidivorans P7]
          Length = 1449

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 7/206 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     ++I EIG +++ D    ++ F  F+ P  +   P  +++  ITD+
Sbjct: 426 YCVLDLETTGFSPVIEKITEIGIMKIKDGKVIDK-FSCFVNPK-KPIPPRVVEVTNITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D  +   +F +  DF  +  +  +AHNA+FD+GF+    + +  D         TL+
Sbjct: 484 MVRDAETIEQVFPKMLDFIKD--SVLVAHNAEFDIGFLKHNARVLGYDFDFTYLDTLTLA 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +            + I     H AL D      ++  M+    +       +
Sbjct: 542 QELFPDFKTYKL---GRIAKNLGIKVEVAHRALDDVDTTVKIFNVMLEKLKERGAETLQD 598

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
            D +  +E         LK    +  
Sbjct: 599 VDVYGSDEAAKKEEYKKLKTYHAIIL 624


>gi|194334228|ref|YP_002016088.1| DNA-directed DNA polymerase [Prosthecochloris aestuarii DSM 271]
 gi|194312046|gb|ACF46441.1| DNA-directed DNA polymerase [Prosthecochloris aestuarii DSM 271]
          Length = 180

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 5/165 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I  D+ETTGL   + DR+IE+ AV +++       F   +            K+HGIT
Sbjct: 12  RVIAVDVETTGLSPRRGDRVIEVAAVAIVNG-VIEEHFCCLIN-VNAPIPTVVQKIHGIT 69

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E L  +    +++ EF  F        IAHNA FD+ FI  EL+ +    L+ S+    
Sbjct: 70  PELLAGEKPPEAVWPEFLKFIGS--NILIAHNAPFDISFIRNELRFLGLSLLNGSQCTLA 127

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            S  +     +    N      G        H A  D+ L + ++
Sbjct: 128 FSRKKFPQLKNHKLENVARHVLGGMPKGIKLHRASGDALLTAMIW 172


>gi|114766856|ref|ZP_01445783.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Pelagibaca bermudensis HTCC2601]
 gi|114540977|gb|EAU44036.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseovarius sp. HTCC2601]
          Length = 401

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 4/111 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           VFD ETTGL    D +++IGAV +L+            + P G    P + K+H ++D  
Sbjct: 279 VFDTETTGLLPHKDEVVQIGAVRVLNGRIVPGEVMDQLVDP-GIPIPPSSTKVHQVSDAM 337

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++ +P  +     F      + +  +AHNA FD+ F+     R+  +   P
Sbjct: 338 VRGQPDIAEAGRRFHR--FAKGSVIVAHNAPFDMAFLRRHRNRMGVEWDHP 386


>gi|307330749|ref|ZP_07609886.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306883641|gb|EFN14690.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 328

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 70/177 (39%), Gaps = 8/177 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+     +L         +   + P      P  + +HG+T+E
Sbjct: 26  YAVVDVETTGL-ARDDRIVSAAVYQLDARGAVQDHWYTLVNPQR---DPGPVWIHGLTEE 81

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  E  +   +     +AHNA FD   +  E  R         R+     
Sbjct: 82  VLEGAPRFPEIAGELAERLAD--RVLVAHNAAFDWSMLAREYARSKSAAPVRQRLCTIAL 139

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                 P   + L +L   YG+       H AL D+ +L++ +   +   ++     
Sbjct: 140 SKELGLPLPNHKLETLAAHYGVVQRRA--HHALDDARVLAETFRPSLHRAAETGLRL 194


>gi|257886903|ref|ZP_05666556.1| DNA polymerase III [Enterococcus faecium 1,141,733]
 gi|257822957|gb|EEV49889.1| DNA polymerase III [Enterococcus faecium 1,141,733]
          Length = 929

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++   +    ++AHN  FD  F+N EL R     L    I     
Sbjct: 64  RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184
                       L  L +  G      + H A  D+ +   + +   + M     I   
Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178


>gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
 gi|297147193|gb|EDY59400.2| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
          Length = 327

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 8/192 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L    +    +   + P      P  + +HG+T +
Sbjct: 23  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPER---DPGPVWIHGLTSD 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  EF    +      +AHNA FD   I  E  R  +      R+   + 
Sbjct: 79  ALEGAPLFQDIADEFSSRLDG--RVLVAHNAVFDWQMIAREYARAGRVAPVSQRLCTIVL 136

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                 P   + L SL   +G+       H AL D+ +L++ +   +   +  +     +
Sbjct: 137 SKELGLPLPNHKLESLAAHFGVVQQRA--HHALDDARVLAEAFRPSLRAAAARSVRLPLH 194

Query: 189 EDRFFKEEKKTV 200
           E R   E     
Sbjct: 195 ECRPLTEWTDRA 206


>gi|302869008|ref|YP_003837645.1| DNA polymerase III subunit epsilon [Micromonospora aurantiaca ATCC
           27029]
 gi|302571867|gb|ADL48069.1| DNA polymerase III, epsilon subunit [Micromonospora aurantiaca ATCC
           27029]
          Length = 584

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 69/206 (33%), Gaps = 4/206 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       I EIGAV++    +        + P G    P    L GIT  
Sbjct: 32  FVVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITQA 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P    +   F +F ++  A  +AHNA +DVGF+ A   +      +P  +     
Sbjct: 90  MLLPAPPIEQVLPSFLEFVSD--AVLVAHNAPYDVGFLKAACAKHGYRWPNPRVLDTAAL 147

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             R        +            + +  H AL D+    DV   ++        G    
Sbjct: 148 ARRVLTRDEVPNRKLGTLAAYFRTATQPTHRALDDAKATVDVLHGLIGRLGGHRVGTVGE 207

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
              F +    T      L    P   
Sbjct: 208 AIEFARAVTPTQRRKRHLADGLPKVP 233


>gi|163784927|ref|ZP_02179686.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879804|gb|EDP73549.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 206

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 5/176 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTGL + N+ +IE+ A++       ++       P       + + L GIT+ 
Sbjct: 12  FVIIDLETTGLSASNNSVIEVAAIKYQSGMIIDQ-LHHLTKPRENFIPSKVINLTGITNA 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + DKP F  I+ E ++F  +  +  +AHNAKFD+ F++   + + K+ L    I     
Sbjct: 71  MVIDKPYFEDIYPEVYNFLKD--SIVVAHNAKFDISFLSEVHKIVFKNNLRLHYICTDNL 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
             R      +  L+SL    GI    + KH AL D+      +  M+      N  
Sbjct: 129 ARRIFPEIQKKSLSSLTNYLGINF--KQKHRALSDAQATLQAFQTMLEYLQDYNIN 182


>gi|283769479|ref|ZP_06342375.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
           extructa W1219]
 gi|283103747|gb|EFC05133.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
           extructa W1219]
          Length = 1442

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 7/206 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +K D +IE GAV++ +  + +   Q+F+ P          K   I++E
Sbjct: 393 YVVFDLETTGLSAKYDYMIEFGAVKIKNGLRLDSK-QLFIKPP-ISIPAFIEKKTNISNE 450

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++  SFS +  E   +  +  A  +AHNA FD  F+N EL+R+++ PL    I     
Sbjct: 451 MVRNAKSFSEVVDELLAYIGD--AVLVAHNASFDFPFLNEELRRLSRKPLTNPVIDTLDM 508

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   SR  L  +   Y +  S    H A  D+++L+D +  ++V   +    F+  
Sbjct: 509 ARAILSDRSRFALEYVSNHYKLNYSRSDAHRADYDANILADAFEHLLVDAKR---QFQVE 565

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
             R  +++  T  +   +     +  
Sbjct: 566 TIRDLQDKVHTDSDFKRMFSKHAIVI 591


>gi|227551932|ref|ZP_03981981.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecium TX1330]
 gi|257895474|ref|ZP_05675127.1| DNA polymerase III [Enterococcus faecium Com12]
 gi|293378340|ref|ZP_06624509.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecium PC4.1]
 gi|227178933|gb|EEI59905.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecium TX1330]
 gi|257832039|gb|EEV58460.1| DNA polymerase III [Enterococcus faecium Com12]
 gi|292643204|gb|EFF61345.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecium PC4.1]
          Length = 929

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++   +    ++AHN  FD  F+N EL R     L    I     
Sbjct: 64  RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184
                       L  L +  G      + H A  D+ +   + +   + M     I   
Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178


>gi|293568616|ref|ZP_06679931.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1071]
 gi|291588576|gb|EFF20409.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1071]
          Length = 929

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++   +    ++AHN  FD  F+N EL R     L    I     
Sbjct: 64  RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184
                       L  L +  G      + H A  D+ +   + +   + M     I   
Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178


>gi|15618325|ref|NP_224610.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
           CWL029]
 gi|15835943|ref|NP_300467.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138]
 gi|16752629|ref|NP_444893.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39]
 gi|4376690|gb|AAD18554.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029]
 gi|8163413|gb|AAF73657.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila
           pneumoniae AR39]
 gi|8978782|dbj|BAA98618.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138]
 gi|269303286|gb|ACZ33386.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Chlamydophila pneumoniae LPCoLN]
          Length = 237

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 8/177 (4%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +    M  ++F D ETTG   + DRIIEI A      S T+ +F  ++ P       EA 
Sbjct: 1   MSSQTMDVLIFYDTETTGTQIERDRIIEIAAY----NSVTDESFLTYVNPE-IPIPDEAS 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K+HGIT + +   P F   +  F  F  E +     +N  FD   +  E +R + +PL  
Sbjct: 56  KIHGITTDAVLSAPKFPEAYEGFRKFCGEDSILVAHNNDGFDFPLLGKECRRHSLEPLTN 115

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             I       + +    +++L  L + YG        H AL D  +L  V+  ++  
Sbjct: 116 RTIDSLKWAQKYRPDLPKHNLQYLRQVYGFA--ENQAHRALDDVVILHKVFTSLIGD 170


>gi|227495992|ref|ZP_03926303.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM
           15434]
 gi|226834480|gb|EEH66863.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM
           15434]
          Length = 547

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 68/205 (33%), Gaps = 4/205 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG    +  I EIGAV +             + P GR    +   L GIT+ 
Sbjct: 31  FVVVDLETTGAGPGSHTITEIGAVRVRGGQ-VEDELSTLVNP-GRAIPAQITVLTGITNA 88

Query: 69  FLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +   P           W    E+    +AHNA+FDVG +    + +  D  +P  +   
Sbjct: 89  MVAGAPPVPEALERFLQWARLWEEETVLVAHNARFDVGHLRGAARALELDWHEPRVLDTL 148

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
               R    S   +         +    R  H AL D+    DV    +     +     
Sbjct: 149 ALARRAWTRSEVPNHRLATLASFVGSPTRPTHRALDDARATVDVLHAALEVLGPLGVTHL 208

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211
            +               S L +D P
Sbjct: 209 EDLATATDPVPARRRAKSRLAQDLP 233


>gi|225573157|ref|ZP_03781912.1| hypothetical protein RUMHYD_01348 [Blautia hydrogenotrophica DSM
          10507]
 gi|225039486|gb|EEG49732.1| hypothetical protein RUMHYD_01348 [Blautia hydrogenotrophica DSM
          10507]
          Length = 234

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 5/50 (10%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50
          M++      + FD+ETTGLD + + IIEIGA+++ +     R F  F+ P
Sbjct: 1  MLKS----YVAFDVETTGLDPEQNEIIEIGALKVRNGKVVER-FMKFIRP 45


>gi|148245142|ref|YP_001219835.1| DNA polymerase III subunit epsilon [Clostridium kluyveri DSM 555]
 gi|146337022|gb|ABQ23633.1| DNA polymerase III, epsilon subunit related exonuclease
           [Clostridium kluyveri DSM 555]
          Length = 441

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 7/166 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +V D+ETTGL+   D IIEI A +  +      T+   + P      P    ++ I +
Sbjct: 130 NFVVVDLETTGLEPTRDYIIEIAAAKYENNEII-DTYTTLVNPE-VFIPPNITNINHIDN 187

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +KD P    +   F +F        +AHNA FD+ F+NA L  +     +P       
Sbjct: 188 DMVKDCPEIKEVLPGFMNFI--GQLPLVAHNAPFDIKFLNANLALLGLYLNNPIIDTLP- 244

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              +       + L ++ +   I    +  H AL D ++   +Y++
Sbjct: 245 ISRKLFSEIENHKLGTIKEYLNID--VQDSHRALPDCYVCGQIYLE 288


>gi|317056777|ref|YP_004105244.1| DNA polymerase III subunit alpha [Ruminococcus albus 7]
 gi|315449046|gb|ADU22610.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7]
          Length = 1500

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 6/165 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD+ETTG ++K D+IIEIGAV+L +    ++ F + + P     +     L  ITD+ 
Sbjct: 450 ICFDLETTGTNAKEDKIIEIGAVKLRNLEIVDK-FDMLVDPE-VPLTEFISNLTNITDDM 507

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LK +    +    F  F  +     +AHNA FD GFI    +R+  D    S     +S 
Sbjct: 508 LKGQADIRTAIDAFIAFCGDSPC-LVAHNAPFDTGFIRNTCERLGIDFNFSSVDTVPMSQ 566

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                                       H    D+ +L  ++I++
Sbjct: 567 LMLPQLERHKLNYVA---EHFGYGDFQHHRGCDDAEVLGHIFIEL 608


>gi|297529654|ref|YP_003670929.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           C56-T3]
 gi|297252906|gb|ADI26352.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           C56-T3]
          Length = 909

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 7/177 (3%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++ D+ETTG    K DRII++G   + D     R F  F  P  +       +L  I 
Sbjct: 4   RFVIIDLETTGNGPKKGDRIIQLGMAVVEDGLIVER-FASFFNPE-QPIPLFIQQLTNIN 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++  P F+    E     +       AHN  FD+ F+ AEL+R    P     I   
Sbjct: 62  EQMVEGAPLFADKAGEIAALMHGAYFV--AHNVDFDLPFLQAELERAGWPPFAGPTIDTV 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                    +    L  L ++ G+       H A  D+ + + ++I ++   S++  
Sbjct: 120 ELARIVLPTAESYKLGDLARQLGLHHDRP--HQADSDAEVTAKLFIALLKRLSRLPL 174


>gi|309790215|ref|ZP_07684787.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
 gi|308227800|gb|EFO81456.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
          Length = 935

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 63/181 (34%), Gaps = 14/181 (7%)

Query: 7   MRK---IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           M++   +  D+ETTGL +  D IIE  AV+  D     R F   + P  +    +  +L 
Sbjct: 1   MKERIFVALDVETTGLQAGIDEIIEFAAVKFRDGEILER-FSQLIAP-RQPLPLKITRLT 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT + L D P F+ +  +   F         + N    +                    
Sbjct: 59  GITAQDLADAPHFNDVGGKIAGFIKSYPLVGHSINFDLGMLRAQGMNFTQPVYDTFDLAT 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           I            +   L ++  R GI       H AL D+ + + V+  ++     +  
Sbjct: 119 I-------LMPQIAVYKLGAIADRLGIPH--PDDHRALNDAEVTAHVFTHLLGVIESLGL 169

Query: 184 G 184
            
Sbjct: 170 E 170


>gi|117928176|ref|YP_872727.1| hypothetical protein Acel_0968 [Acidothermus cellulolyticus 11B]
 gi|117648639|gb|ABK52741.1| DNA polymerase III, epsilon subunit [Acidothermus cellulolyticus
           11B]
          Length = 566

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 66/203 (32%), Gaps = 4/203 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       I E+ AV++          Q  + P GR   P    L GITD 
Sbjct: 26  FVVVDLETTGGAPGTGAITELAAVKVRGGEVLGE-LQTLVNP-GRPIPPFITVLTGITDA 83

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P   ++   F +      +  +AHNA FDVGF+ A       D  +   +     
Sbjct: 84  MVAPAPPIDAVLPTFLE--FATGSVLVAHNAPFDVGFLRAACAAAGYDWPEFEVLDTARL 141

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             R        +                 H AL D +   DV   ++        G   +
Sbjct: 142 ARRVLTREEAPNCTLATLARVFRAKTTPNHRALADVYATIDVLHGLLERLGSFGVGSLAD 201

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
              F  +   T      L    P
Sbjct: 202 VRTFSAKVTATQRQKRHLAERLP 224


>gi|293571662|ref|ZP_06682683.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E980]
 gi|291608332|gb|EFF37633.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E980]
          Length = 929

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++   +    ++AHN  FD  F+N EL R     L    I     
Sbjct: 64  RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184
                       L  L +  G      + H A  D+ +   + +   + M     I   
Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178


>gi|257898090|ref|ZP_05677743.1| DNA polymerase III [Enterococcus faecium Com15]
 gi|257836002|gb|EEV61076.1| DNA polymerase III [Enterococcus faecium Com15]
          Length = 929

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++   +    ++AHN  FD  F+N EL R     L    I     
Sbjct: 64  RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184
                       L  L +  G      + H A  D+ +   + +   + M     I   
Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178


>gi|227544617|ref|ZP_03974666.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri CF48-3A]
 gi|300910253|ref|ZP_07127713.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
 gi|227185400|gb|EEI65471.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri CF48-3A]
 gi|300892901|gb|EFK86261.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
          Length = 954

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 77/213 (36%), Gaps = 8/213 (3%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG +    DRII+IG V + D       F+  + P   K     ++L GI D+ 
Sbjct: 21  VVDLETTGTNVNHGDRIIQIGCVLVQDGEIM-NHFETKINP-REKIPRSIVQLTGIEDKD 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P F  I    +    E      AHN  FD  F+NAEL+R     L    I      
Sbjct: 79  VRKAPLFEDIAGTIYSLLAETTFV--AHNVNFDFPFLNAELERAGYPSLSIPAIDTVTLS 136

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGFKTN 188
                 +    L  L     I   H   H A+ D+   +D+   ++           +  
Sbjct: 137 QILLPTAKSFRLRDLTSSLHIEHDHP--HSAVSDAEATADLLNDLLKRVQELPTLTLEKI 194

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
                   ++T        + +    +   EEL
Sbjct: 195 TQLKLNLPQQTAGVFDAELQRRRKSPQPLSEEL 227


>gi|56420711|ref|YP_148029.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus kaustophilus HTA426]
 gi|56380553|dbj|BAD76461.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426]
          Length = 909

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 7/177 (3%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++ D+ETTG    K DRII++G   + D     R F  F  P  +       +L  I 
Sbjct: 4   RFVIIDLETTGNGPKKGDRIIQLGMAVVEDGLIVER-FASFFNPE-QPIPLFIQQLTNIN 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++  P F+    E     +       AHN  FD+ F+ AEL+R    P     I   
Sbjct: 62  EEMVEGAPLFADKAGEIAALMHGAYFV--AHNVDFDLPFLQAELERAGWPPFSGPTIDTV 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                    +    L  L ++ G+  +    H A  D+ + + ++I ++   S++  
Sbjct: 120 ELARIVLPTAESYKLGDLARQLGLHHNRP--HQADSDAEVTAKLFIALLKRLSRLPL 174


>gi|219684048|ref|YP_002470430.1| hypothetical protein CKR_P20 [Clostridium kluyveri NBRC 12016]
 gi|219570556|dbj|BAH08539.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 444

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 7/166 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +V D+ETTGL+   D IIEI A +  +      T+   + P      P    ++ I +
Sbjct: 133 NFVVVDLETTGLEPTRDYIIEIAAAKYENNEII-DTYTTLVNPE-VFIPPNITNINHIDN 190

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +KD P    +   F +F        +AHNA FD+ F+NA L  +     +P       
Sbjct: 191 DMVKDCPEIKEVLPGFMNFI--GQLPLVAHNAPFDIKFLNANLALLGLYLNNPIIDTLP- 247

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              +       + L ++ +   I    +  H AL D ++   +Y++
Sbjct: 248 ISRKLFSEIENHKLGTIKEYLNID--VQDSHRALPDCYVCGQIYLE 291


>gi|15835150|ref|NP_296909.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
 gi|270285322|ref|ZP_06194716.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
 gi|270289339|ref|ZP_06195641.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss]
 gi|301336719|ref|ZP_07224921.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14]
 gi|8163241|gb|AAF73567.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum
           Nigg]
          Length = 232

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 66/168 (39%), Gaps = 7/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG     DRI+EI A        T  +FQ  + P       EA K+HGIT   
Sbjct: 5   IFYDTETTGTQIDKDRIVEIAAY----NGTTGESFQTLVNPE-IPIPAEATKIHGITTSE 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P F   + +F DF    N     +N  FD   +  E +R          I      
Sbjct: 60  VANAPKFPEAYQQFSDFCGTDNILVAHNNNAFDYPLLLRECRRHGLPEPQLRTIDSLKWA 119

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            + +    ++ L  L + YG      + H AL D   L  V+  ++  
Sbjct: 120 KKYRTDLPQHSLQYLRQVYGFE--ENNAHRALDDVITLHRVFSVLVGD 165


>gi|317051112|ref|YP_004112228.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5]
 gi|316946196|gb|ADU65672.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5]
          Length = 169

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 5/170 (2%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D+ETTGL   +  R+IEI AV++         F   +   G   S     +HGIT 
Sbjct: 4   FVAIDVETTGLSPARGARVIEIAAVKMEQGQVIAE-FCSLIQ-VGVPVSAATTGVHGITT 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L  +P+   I+ +F  F   ++   +AHNA FD+ F+++ELQR+     +PS     L
Sbjct: 62  AMLAGQPAPGEIWPQFIWFI--EHHPIVAHNAPFDMRFVHSELQRLGLSMANPSHCTLRL 119

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              +     +           G        H AL D+ L + V+ +M   
Sbjct: 120 GRRKYPRLPNHKLEYLAQHVLGKLPPEIQLHRALGDARLTAMVWEEMRRE 169


>gi|258539791|ref|YP_003174290.1| DNA polymerase III PolC [Lactobacillus rhamnosus Lc 705]
 gi|257151467|emb|CAR90439.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705]
          Length = 1444

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 6/166 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P         L ++     
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDPG---FPLSELTINLTHIT 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 S S              A  + HN  FDVGF++   +R     +D   I     
Sbjct: 477 DDMVHGSKSEEEVFRLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLEL 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                     + L++L K+Y +++ H   H A +D+     +   +
Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEH--HHRANVDAEATGYLLYAL 580


>gi|229552421|ref|ZP_04441146.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314158|gb|EEN80131.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 1437

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 6/166 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P         L ++     
Sbjct: 414 YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDPG---FPLSELTINLTHIT 469

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 S S              A  + HN  FDVGF++   +R     +D   I     
Sbjct: 470 DDMVHGSKSEEEVFRLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLEL 529

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                     + L++L K+Y +++ H   H A  D+     +   +
Sbjct: 530 SRMLHPERKNHKLDTLAKQYKVSLEH--HHRANADAEATGYLLYAL 573


>gi|212638970|ref|YP_002315490.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Anoxybacillus flavithermus WK1]
 gi|212560450|gb|ACJ33505.1| DNA polymerase III, epsilon subunit and Rad3-related DNA helicase
           [Anoxybacillus flavithermus WK1]
          Length = 880

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 7/163 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V DIETTG   K  DRII+IG V +       + F  F+ P  R       +L GI 
Sbjct: 4   RFVVVDIETTGNAPKKEDRIIQIGFVVIEGDK-VKKRFSTFVQPE-RDIPLFIQQLTGID 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              + D P F  I +   +    + A ++AHN +FD  F+  E  R    P     +   
Sbjct: 62  HAMVHDAPPFQHIAAMLVE--QWEGAYFVAHNVQFDWAFLQEEFIRSGIQPPTCRLLDTV 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                     S   LN L +    + +H   H A  D+   + 
Sbjct: 120 ELARFLMPTQSSYKLNHLAEAL--SFAHDRPHQADYDAEATAQ 160


>gi|89099885|ref|ZP_01172757.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911]
 gi|89085443|gb|EAR64572.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911]
          Length = 934

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 7/177 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + +V D+ETTG  + K D+II+  AV +      ++ +   L P G++      +L G+ 
Sbjct: 4   KYVVVDLETTGNSAKKGDKIIQFAAVVMEGGKIIDQ-YSSLLNP-GKEIPAFIEELTGLN 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  +  +   +      AHN  FD+ F+  EL            I   
Sbjct: 62  DSMVSDAPVFAEIAPKVMELLEDAYFV--AHNVLFDLSFLQEELLDAGFPGFYGPVIDTV 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                    S    L+ L  + G  I H   H A  D++  + +    +    ++  
Sbjct: 120 ELARTVLPCSDSYKLSDLSAKEG--IMHDRPHQADSDAYATAKLLHIFLERLEELPL 174


>gi|152992740|ref|YP_001358461.1| DNA polymerase III subunit epsilon [Sulfurovum sp. NBC37-1]
 gi|151424601|dbj|BAF72104.1| DNA polymerase III, epsilon subunit [Sulfurovum sp. NBC37-1]
          Length = 206

 Score = 70.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 1/166 (0%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGLD K D I+ IGAV++  +   T+    +++    + +            +
Sbjct: 32  VVFDCETTGLDPKKDGIVSIGAVKIKENRILTDEAMHIYVKQEKQISHESITIHQIRHCD 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P   +I    +       A +        +      +  I               
Sbjct: 92  LEDAVPIEEAIEEFLYFIGGRTLAGYYLEFDVAMINKYIKPMYGITLPNKQEEVSAIYYD 151

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                 P    DL        +++     H AL D+ + + +Y+K+
Sbjct: 152 KKISTIPQGNIDLRFETIIEDLSLPKLQAHDALNDAVMTAMIYLKL 197


>gi|227534929|ref|ZP_03964978.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187685|gb|EEI67752.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 1437

 Score = 70.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 6/166 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P         L ++     
Sbjct: 414 YVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQ-FEEMIDPG---FPLSELTINLTHIT 469

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 S S +            A  + HN  FDVGF++   +R     +D   I     
Sbjct: 470 DDMVHGSKSEVDVFKLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLEL 529

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                     + L++L K+Y +++ H   H A  D+     +   +
Sbjct: 530 SRMLHPERKNHKLDTLAKQYKVSLEH--HHRANADAEATGYLLYAL 573


>gi|320528407|ref|ZP_08029569.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
 gi|320131321|gb|EFW23889.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
          Length = 1449

 Score = 70.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 4/171 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FD+ETTGL    D IIE GAV + + +  +R  Q+F+ P              IT++
Sbjct: 394 YISFDLETTGLSCYFDHIIEFGAVRIKNSTIIDRK-QLFIKPP-VSIPGFITSKTNITND 451

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+   F+    E  D+  +     +AHNA FD  F+N EL+RI + PL    I     
Sbjct: 452 MVKNAKPFAEAIDEILDYIKD--DVLVAHNATFDYYFLNEELRRIGRKPLTNVVIDTLDM 509

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                       L +L + Y +  +    H A  D+  L+DV++ ++    
Sbjct: 510 SRAVLPDRRAYRLGNLSRYYHVNYNEEEAHRADFDAGALADVFLCLLKDAK 560


>gi|269837031|ref|YP_003319259.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
          thermophilus DSM 20745]
 gi|269786294|gb|ACZ38437.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
          thermophilus DSM 20745]
          Length = 966

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+E TG+D + D IIEI A++  +    +R ++  + P G         L GI  +
Sbjct: 5  YVALDLEATGMDPERDEIIEIAAIKFRNDRVLDR-WESLVRPRG-PIPFNITSLTGIGAK 62

Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE 93
           ++  P F  +     DF       
Sbjct: 63 DVRRAPIFPVVAPRLRDFVRNHPIV 87


>gi|116495060|ref|YP_806794.1| DNA polymerase III PolC [Lactobacillus casei ATCC 334]
 gi|122263523|sp|Q038M0|DPO3_LACC3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116105210|gb|ABJ70352.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           casei ATCC 334]
          Length = 1444

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 6/166 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P         L ++     
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQ-FEEMIDPG---FPLSELTINLTHIT 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 S S +            A  + HN  FDVGF++   +R     +D   I     
Sbjct: 477 DDMVHGSKSEVDVFKLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLEL 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                     + L++L K+Y +++ H   H A  D+     +   +
Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEH--HHRANADAEATGYLLYAL 580


>gi|329929349|ref|ZP_08283102.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Paenibacillus sp. HGF5]
 gi|328936718|gb|EGG33161.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Paenibacillus sp. HGF5]
          Length = 1438

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 4/114 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL    ++IIE+ AV++ +  +  R +  F+ P+ R       +L  I D+
Sbjct: 421 YVVFDIETTGLSITANKIIELAAVKMHEGKEIGR-YATFVNPHER-IPYHIQQLTNINDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            +KD P    +  EF +F  +     +AHNA+FD+GFI A L+    D L+   
Sbjct: 479 MVKDAPELEPVLKEFVEFVGD--GVLVAHNARFDMGFIQAALKNAGMDTLENPY 530


>gi|326406526|gb|ADZ63597.1| DNA polymerase III subunit epsilon [Lactococcus lactis subsp.
           lactis CV56]
          Length = 277

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 4/167 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFD ETTG  ++ + II+IGAV+  + ++    F   +       S E  +L GI  
Sbjct: 4   KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYVSTEITQLTGIKP 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L ++P+   I  EF DF        +AHNA FD+ F+   +       ++  R+ DTL
Sbjct: 64  ADLLNQPTIEEILPEFLDFIKG--HLLVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++    S   L +        ++    H AL D  + + +Y  +
Sbjct: 122 AESKKLLTMSSYALENFKDLL--EMNDLRSHDALNDCLITAKLYQYL 166


>gi|253582216|ref|ZP_04859439.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
           ATCC 27725]
 gi|251835755|gb|EES64293.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
           ATCC 27725]
          Length = 1446

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 6/176 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +VFD+ET GL+S    IIEIGAV+L       R +   + P  +    +  +L  I+ 
Sbjct: 419 NFVVFDLETMGLNSHEHEIIEIGAVKLQGTRIVER-YSQLVNPK-KTIPKKIQELTNISQ 476

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + + P+   +  +F +F  +      AHNA FD+GFI  ++++I      P+ I    
Sbjct: 477 DMVDNMPTIEEVLPKFMEFVGDSTMV--AHNAPFDMGFIRRDVKKIMGYDYKPAVIDTLQ 534

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                        L +L K  G++    + H A+ DS   ++++I  +    ++  
Sbjct: 535 MARDLYPELKAYGLKNLNKVLGLS--LDNHHRAVDDSQATANMFIIFIEKYMEMGI 588


>gi|116696325|ref|YP_841901.1| putative exonuclease [Ralstonia eutropha H16]
 gi|113530824|emb|CAJ97171.1| putative exonuclease [Ralstonia eutropha H16]
          Length = 220

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53
          R +VFDIETTGLDS+   I+EIGA+ +   S  + TFQV + P+ +
Sbjct: 51 RFVVFDIETTGLDSERHEILEIGAIRVNRNSNNHDTFQVLVKPSRK 96


>gi|315443891|ref|YP_004076770.1| exonuclease, DNA polymerase III subunit epsilon family
           [Mycobacterium sp. Spyr1]
 gi|315262194|gb|ADT98935.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Mycobacterium sp. Spyr1]
          Length = 617

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 68/172 (39%), Gaps = 7/172 (4%)

Query: 9   KIVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            +V D+ETTG  +  DR   I EIGAV++         F   + P GR   P+ + L GI
Sbjct: 22  FVVVDLETTGGRASGDRHDAITEIGAVKVRGGEVLGE-FATLVDP-GRAIPPQIVALTGI 79

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   + D P   S+   F +F     A  +AHNA FD+GF+ A  +R       P  +  
Sbjct: 80  TSAMVYDAPRIESVLPSFLEFCRG--AVLVAHNAGFDMGFLRAAAERNQVPWPKPPVLCT 137

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                R         +           S    H AL D+    DV   ++  
Sbjct: 138 VALARRVLTRDEAPSVKLSALARLFGASTTPTHRALDDARATVDVLHALIER 189


>gi|294616364|ref|ZP_06696157.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1636]
 gi|291590878|gb|EFF22594.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1636]
          Length = 929

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++   +    ++AHN  FD  F+N EL R     L    I     
Sbjct: 64  RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184
                       L  L +  G      + H A  D+ +   + +   + M     I   
Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRNLPIITLE 178


>gi|145223545|ref|YP_001134223.1| hypothetical protein Mflv_2958 [Mycobacterium gilvum PYR-GCK]
 gi|145216031|gb|ABP45435.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK]
          Length = 617

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 68/172 (39%), Gaps = 7/172 (4%)

Query: 9   KIVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            +V D+ETTG  +  DR   I EIGAV++         F   + P GR   P+ + L GI
Sbjct: 22  FVVVDLETTGGRASGDRHDAITEIGAVKVRGGEVLGE-FATLVDP-GRAIPPQIVALTGI 79

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   + D P   S+   F +F     A  +AHNA FD+GF+ A  +R       P  +  
Sbjct: 80  TSAMVYDAPRIESVLPSFLEFCRG--AVLVAHNAGFDMGFLRAAAERNQVPWPKPPVLCT 137

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                R         +           S    H AL D+    DV   ++  
Sbjct: 138 VALARRVLTRDEAPSVKLSALARLFGASTTPTHRALDDARATVDVLHALIER 189


>gi|325269993|ref|ZP_08136602.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM
           16608]
 gi|324987716|gb|EGC19690.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM
           16608]
          Length = 896

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 3/120 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGIT 66
           +VFD ETTGLD  +D IIEI A+ +           +++    P   K   +   ++ I 
Sbjct: 515 VVFDTETTGLDVFSDDIIEIAAIRIKGGEIIGDPLDLYIETDKPILPKLGDKENPMYSIY 574

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +      +   +             + HNA +D   I+  L+R   D +        
Sbjct: 575 HAKMAADRLLAPADALQRFLAYIGTRPVLGHNASYDYNIIDNCLKRYCNDTMQTHGNRCF 634


>gi|313899185|ref|ZP_07832705.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. HGF2]
 gi|312956008|gb|EFR37656.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. HGF2]
          Length = 1448

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 5/228 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL S+ D IIE G   + D +   ++ Q+F+ P     S    +L GIT+E
Sbjct: 398 YCVFDLETTGLSSRFDHIIEFGGQIVKDRACI-KSLQLFIKPPVA-LSAFTTELTGITEE 455

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+  SF+    E  DF  +  +  +AHNA FD  F+N EL RI + P+    I     
Sbjct: 456 HMKNAKSFADSIDEILDFIGD--SILVAHNATFDYNFLNDELARIGRPPIMNPVIDTLDL 513

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187
               +       L  + + YGI       H A  D+ +L+  Y+ M+     I N     
Sbjct: 514 ARSMQADRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLAQTYMNMLNDLKHIKNLQELQ 573

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           +        K  V ++++L ++      + +     H   +    K+ 
Sbjct: 574 DMQTAESFRKVRVKHVTILAKNMAGLKELFELVTLSHTSYLAYSSKST 621


>gi|86741790|ref|YP_482190.1| hypothetical protein Francci3_3104 [Frankia sp. CcI3]
 gi|86568652|gb|ABD12461.1| DNA polymerase III, epsilon subunit [Frankia sp. CcI3]
          Length = 584

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 78/220 (35%), Gaps = 8/220 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG     D I EIGAV +             + P G    P    L GITD 
Sbjct: 30  FVVFDLETTGTSPGRDEITEIGAVRVRGGRILAEM-ATLVRP-GVGIPPMVSVLTGITDV 87

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR----II 124
            +   P  + +   F +    + A  +AHNA FD+GF+ A ++                I
Sbjct: 88  MVATAPPVTQVLPTFLE--FARGAVLVAHNAPFDLGFLRAAVELCGYPVPVWEYLDTLRI 145

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
               + R + P  R    +   R  +   HR+   A     +L  ++ ++   G      
Sbjct: 146 ARRVVTRDESPDCRLTSLASLFRSPVEPRHRALADARATVDVLHGLFERLGNAGVTTLED 205

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
                 R    +++       L     ++     +E   +
Sbjct: 206 LHDYSSRVSPAQRRKRHLADGLPTGPGVYIFRDADERALY 245


>gi|226310490|ref|YP_002770384.1| hypothetical protein BBR47_09030 [Brevibacillus brevis NBRC 100599]
 gi|226093438|dbj|BAH41880.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 235

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 7/176 (3%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +V D+ETTG      D II +GAV +   +     +F   + P GR   P    L GITD
Sbjct: 54  VVVDLETTGFYPDHGDAIISMGAVAMRGEHLLLGDSFYTLVNP-GRAIPPHIRSLTGITD 112

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + D P      S F+ +  +     +AH+++ +  F+ + L + ++ P     +   L
Sbjct: 113 DMVADAPPLLEALSRFFQYVGD--RPLVAHHSRHEREFLRSGLWKTSRRPFTHRMLDTML 170

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            I    +P     L++LC  +   I    +H A  D+     ++ K +V      F
Sbjct: 171 LIRLLNNPIGNGSLDALCAAH--DIPISRRHHAYCDALAAGTLWAKYLVKAQSQGF 224


>gi|261407941|ref|YP_003244182.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10]
 gi|261284404|gb|ACX66375.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10]
          Length = 1438

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 4/114 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL    ++IIE+ AV++ +  +  R +  F+ P+ R       +L  I D+
Sbjct: 421 YVVFDIETTGLSITANKIIELAAVKMHEGKEIGR-YATFVNPHER-IPYHIQQLTNINDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            +KD P    +  EF +F  +     +AHNA+FD+GFI A L+    D L+   
Sbjct: 479 MVKDAPELEPVLKEFVEFVGD--GVLVAHNARFDMGFIQAALKNAGMDTLENPY 530


>gi|154500376|ref|ZP_02038414.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC
           29799]
 gi|150270881|gb|EDM98164.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC
           29799]
          Length = 1390

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 103/238 (43%), Gaps = 10/238 (4%)

Query: 9   KIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           ++V FDIETTGLD++ D IIEIGAV L +  +   TF  F+ P GR  S E ++L  ITD
Sbjct: 368 EVVCFDIETTGLDNRRDVIIEIGAVILRNG-EIAETFDTFVSP-GRPLSREIVELTSITD 425

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L+  PS       F +     +    AHNA+FD+GFI    +R        S     L
Sbjct: 426 KMLEGAPSQEEAIRAFLE--FAGDRPLAAHNAEFDMGFIAEGCRRYGIPFEKTSIDTLIL 483

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQINFG 184
           +            D+ +   R      HR+   A + +++L   +  +  +   +  +  
Sbjct: 484 AQNLLPDLGKYKLDIVAEHLRLPPFKHHRADADAGMVAYMLVPFFKMLEDLGIHTLQSIN 543

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT--LGKNAIWDRY 240
            +    R   + ++   ++ +L ++      +       H +  +   +   ++ ++Y
Sbjct: 544 PEMTRLRVKGKARRQPKHLIVLAKNNMGLRNLYTLISKAHLEHFKRYPIMPKSLINQY 601


>gi|302387397|ref|YP_003823219.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
           WM1]
 gi|302198025|gb|ADL05596.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
           WM1]
          Length = 222

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 5/167 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +VFD+ETTG+    D I+EI A+++  +          + P G      A +++GITD
Sbjct: 17  NYVVFDLETTGISPAEDSILEISAIKVKGHEPVAE-LNTLVNP-GTHIPAGATRINGITD 74

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +K  P    +  +F  F        + HN +           +       P+  +DTL
Sbjct: 75  DMVKAAPGLKEVLPDFLSFIEG--EILVGHNIQSFDLLFLYRAAQELFGKEVPNDYVDTL 132

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +A+   P       +    Y   I+    H AL D  +    Y +M
Sbjct: 133 FMAKTTLPQLGRHRLTDISAY-FHINTEGAHRALSDCVMNQKCYEQM 178


>gi|258508612|ref|YP_003171363.1| DNA polymerase III PolC [Lactobacillus rhamnosus GG]
 gi|257148539|emb|CAR87512.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
 gi|259649919|dbj|BAI42081.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
          Length = 1444

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 6/166 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P         L ++     
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDPG---FPLSELTINLTHIT 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 S S              A  + HN  FDVGF++   +R     +D   I     
Sbjct: 477 DDMVHGSKSEEEVFRLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLEL 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                     + L++L K+Y +++ H   H A  D+     +   +
Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEH--HHRANADAEATGYLLYAL 580


>gi|328868531|gb|EGG16909.1| DNA polymerase III [Dictyostelium fasciculatum]
          Length = 782

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 5/170 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I FD+ETTG  S+ D IIE+GAVEL+D  +T  TFQ +  P      PEA K+H +  
Sbjct: 401 RVICFDLETTGFGSE-DSIIEVGAVELIDGCRTGLTFQSYAKPK-APIHPEAAKVHNLNA 458

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L   P    + + F DF  +  A  +AHN  FD   +  E+ R         +   T+
Sbjct: 459 YLLSSAPPIEFVLASFMDFVGD--ALLVAHNLAFDHRMLIQEMMRSKIPINRSKKCFCTM 516

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL-LDSHLLSDVYIKMMV 176
              R+       +L+++  +  I      +     +DS +L+ VY  +  
Sbjct: 517 KYYRKVIKDVSYNLDAISSQLKIDKLLLRRTHGALVDSEILAIVYSHLTR 566


>gi|314997169|ref|ZP_07862155.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133a01]
 gi|313588743|gb|EFR67588.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133a01]
          Length = 929

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++   +    ++AHN  FD  F+N EL R     L    I     
Sbjct: 64  RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184
                       L  L +  G      + H A  D+ +   + +   + M     I   
Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178


>gi|152979979|ref|YP_001352248.1| hypothetical protein mma_0558 [Janthinobacterium sp. Marseille]
 gi|151280056|gb|ABR88466.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 195

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 7/167 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D+ETTG +  NDRI EIG V +      +R +  F+ P GR        L GI+D
Sbjct: 6   KLIFVDLETTGANLVNDRITEIGIVAVDPDGCIDR-WSTFVNP-GRPIPEFIQGLTGISD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++  P F ++     +   +    +IAHNA+FD GF+      +    +  + ++ T+
Sbjct: 64  EMVESAPMFETLADTVRERLQD--GLFIAHNARFDYGFL--HHAFVRSGHVLNAEMLCTV 119

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++R   P+ +                 ++H AL D+ LL  ++ K+
Sbjct: 120 KLSRALFPAEKKHNLDSLIARHDL-IPEARHRALADADLLWQLWRKL 165


>gi|304384865|ref|ZP_07367211.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
 gi|304329059|gb|EFL96279.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
          Length = 1436

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 70/190 (36%), Gaps = 5/190 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++FD+ETTGL +  D++IE+ AV++ + +  +  F+ F+ P           ++  + 
Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDE-FEEFIDPG---FPLSETTINLTSI 474

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                + S S            ++A  + HN  FD+GF+N    R   + +    I    
Sbjct: 475 TNEMVRGSLSEKEVFTKFREFYEDAIIVGHNVTFDIGFMNTGYLRHGMEEIKNPIIDTLT 534

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                        LN+L K++ + + H                Y+ +     +    +  
Sbjct: 535 LARFLYPTLKGYRLNTLAKKFNVALEHH-HRAIYDAETTGHLCYLFLKDAEERYGIEYHD 593

Query: 188 NEDRFFKEEK 197
             +    E  
Sbjct: 594 QLNDHMTEND 603


>gi|261209451|ref|ZP_05923814.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289566622|ref|ZP_06447041.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           D344SRF]
 gi|260076579|gb|EEW64343.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289161563|gb|EFD09444.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           D344SRF]
          Length = 929

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++   +    ++AHN  FD  F+N EL R     L    I     
Sbjct: 64  RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184
                       L  L +  G      + H A  D+ +   + +   + M     I   
Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178


>gi|224826734|ref|ZP_03699834.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224600954|gb|EEG07137.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 707

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 8/167 (4%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGL+    D II+IGA  +++        F+  + P  R    +++K+HGIT E
Sbjct: 519 VFDTETTGLEPAAGDEIIQIGATRIVNRRLLQHEGFEQLIDP-RRPLPEDSVKIHGITPE 577

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  +P   ++   F  +  +     +AHNA FD+ F+  +          P      LS
Sbjct: 578 MLAGQPPLDTVLPAFRAYCAD--TVLVAHNAAFDMRFLQLKEASTGVRFDQPVLDTLLLS 635

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            A        + L ++ +R G+TI  R  H A+ D+ +  +V++KM+
Sbjct: 636 -AVLHPNQESHRLEAIAERLGVTIIGR--HTAMGDAIVTGEVFLKMI 679


>gi|191638563|ref|YP_001987729.1| DNA polymerase III PolC [Lactobacillus casei BL23]
 gi|190712865|emb|CAQ66871.1| DNA polymerase III polC-type (PolIII) [Lactobacillus casei BL23]
 gi|327382601|gb|AEA54077.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus casei LC2W]
 gi|327385799|gb|AEA57273.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus casei BD-II]
          Length = 1444

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 6/166 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P         L ++     
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQ-FEEMIDPG---FPLSELTINLTHIT 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 S S +            A  + HN  FDVGF++   +R     +D   I     
Sbjct: 477 DDMVHGSKSEVDVFKLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLEL 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                     + L++L K+Y +++ H   H A  D+     +   +
Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEH--HHRANADAEATGYLLYAL 580


>gi|294619947|ref|ZP_06699320.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1679]
 gi|291593804|gb|EFF25305.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1679]
          Length = 929

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++   +    ++AHN  FD  F+N EL R     L    I     
Sbjct: 64  RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184
                       L  L +  G      + H A  D+ +   + +   + M     I   
Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178


>gi|257884118|ref|ZP_05663771.1| DNA polymerase III [Enterococcus faecium 1,231,501]
 gi|257819956|gb|EEV47104.1| DNA polymerase III [Enterococcus faecium 1,231,501]
          Length = 929

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++   +    ++AHN  FD  F+N EL R     L    I     
Sbjct: 64  RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184
                       L  L +  G      + H A  D+ +   + +   + M     I   
Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178


>gi|239631345|ref|ZP_04674376.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066623|ref|YP_003788646.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang]
 gi|239525810|gb|EEQ64811.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300439030|gb|ADK18796.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus casei str. Zhang]
          Length = 1444

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 6/166 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P         L ++     
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQ-FEEMIDPG---FPLSELTINLTHIT 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 S S +            A  + HN  FDVGF++   +R     +D   I     
Sbjct: 477 DDMVHGSKSEVDVFKLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLEL 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                     + L++L K+Y +++ H   H A  D+     +   +
Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEH--HHRANADAEATGYLLYAL 580


>gi|50365104|ref|YP_053529.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
 gi|50363660|gb|AAT75645.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
          Length = 1493

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 9/209 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEA 59
           IR++KM  +VFD+ETTGL  + + IIE GAV       T +T  +     P  +      
Sbjct: 435 IRESKM--VVFDLETTGLSPEFNEIIEFGAVVFDP--VTGKTTKYDYLFKPK-QPLKQFT 489

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + L  IT E L+DK +    F + ++   +  +  +AHNA FD  F+N+  +R+    L 
Sbjct: 490 IDLTNITPEMLEDKKNIDDDFDKIYELIKD--SILVAHNANFDFNFLNSLSKRLGYGDLQ 547

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            + I         +     + L ++CK++GI       H    D+ +L+D++ K++    
Sbjct: 548 NTVIDTLTLSRLVRPALKSHRLGAVCKKFGILYDEHVAHRGDYDADVLNDLFFKIIAELK 607

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKR 208
                    +    + E        L  R
Sbjct: 608 LTTPIIYDADLIKLEPENDKDNINLLRSR 636


>gi|229918664|ref|YP_002887310.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b]
 gi|229470093|gb|ACQ71865.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b]
          Length = 1430

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 12/225 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  ++IIE+  V++ D    +R F+ F  P     S   ++L GITD+
Sbjct: 410 YVVFDVETTGLSAVYNKIIELAGVKIKDGEIIDR-FEAFADPKHA-LSATTIELTGITDD 467

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ +P    I   F D+  +  +  +AHNA FD+GF+ A L+    +P D   I     
Sbjct: 468 MVQGQPDPEVITKRFVDWCGD--SILVAHNASFDMGFLEATLRSGGHEPDDYPVIDTLEL 525

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L KR+   I     H A+ D+   + + +K++    Q+ F   T+
Sbjct: 526 ARTLMPTLKNHRLNTLAKRF--DIELTQHHRAIYDAEATAYLLMKLLDLAKQM-FEMTTH 582

Query: 189 EDRFFKEEKKTVPNIS-----LLKRDKPLFTRITKEELDEHDKTI 228
                K                 K  KP    + +     H   +
Sbjct: 583 RSLNAKVGSDVSKIRPFHATIYAKNKKPGLRHLYELISLSHIDYL 627


>gi|15672964|ref|NP_267138.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723925|gb|AAK05080.1|AE006332_9 DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 277

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 4/167 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFD ETTG  ++ + II+IGAV+  + ++    F   +       S E  +L GI  
Sbjct: 4   KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYVSTEITQLTGIKP 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L ++P+   I  EF DF        +AHNA FD+ F+   +       ++  R+ DTL
Sbjct: 64  ADLLNQPTIEEILPEFLDFIKG--HLLVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++    S   L +        ++    H AL D  + + +Y  +
Sbjct: 122 AESKKLLTMSSYALENFKDLL--EMNDLRSHDALNDCLITAKLYQYL 166


>gi|69247318|ref|ZP_00604300.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase
           [Enterococcus faecium DO]
 gi|257890489|ref|ZP_05670142.1| DNA polymerase III [Enterococcus faecium 1,231,410]
 gi|258614363|ref|ZP_05712133.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Enterococcus faecium DO]
 gi|260558928|ref|ZP_05831115.1| DNA polymerase III [Enterococcus faecium C68]
 gi|293559766|ref|ZP_06676286.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1162]
 gi|314940162|ref|ZP_07847340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133a04]
 gi|314942421|ref|ZP_07849264.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133C]
 gi|314950181|ref|ZP_07853466.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0082]
 gi|314952303|ref|ZP_07855314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133A]
 gi|314994254|ref|ZP_07859557.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133B]
 gi|68194888|gb|EAN09359.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase
           [Enterococcus faecium DO]
 gi|257826849|gb|EEV53475.1| DNA polymerase III [Enterococcus faecium 1,231,410]
 gi|260075036|gb|EEW63351.1| DNA polymerase III [Enterococcus faecium C68]
 gi|291606249|gb|EFF35663.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1162]
 gi|313591341|gb|EFR70186.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133B]
 gi|313595562|gb|EFR74407.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133A]
 gi|313598821|gb|EFR77666.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133C]
 gi|313640601|gb|EFS05181.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133a04]
 gi|313643491|gb|EFS08071.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0082]
          Length = 929

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++   +    ++AHN  FD  F+N EL R     L    I     
Sbjct: 64  RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184
                       L  L +  G      + H A  D+ +   + +   + M     I   
Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178


>gi|312140182|ref|YP_004007518.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S]
 gi|311889521|emb|CBH48838.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S]
          Length = 577

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 65/169 (38%), Gaps = 4/169 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG  S++D I EIGAV++             + P GR   P  ++L GIT  
Sbjct: 29  FVVVDLETTGGSSESDAITEIGAVKVRGGEVLGE-LGTLVDP-GRAIPPYIVELTGITTA 86

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P   ++   F +      A  +AHNA FDVGF+ A   R          +     
Sbjct: 87  MVRTAPRIDTVLPAFLE--FAGGAVLVAHNAGFDVGFLKAAAARQGLPWPKFQVLCTVKL 144

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             R         +        +       H AL D+    DV   ++  
Sbjct: 145 ARRVLGRDEAPSVKLSALAALLGADTTPTHRALDDARATVDVLHALIGR 193


>gi|325676936|ref|ZP_08156608.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707]
 gi|325552236|gb|EGD21926.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707]
          Length = 577

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 65/169 (38%), Gaps = 4/169 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG  S++D I EIGAV++             + P GR   P  ++L GIT  
Sbjct: 29  FVVVDLETTGGSSESDAITEIGAVKVRGGEVLGE-LGTLVDP-GRAIPPYIVELTGITTA 86

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P   ++   F +      A  +AHNA FDVGF+ A   R          +     
Sbjct: 87  MVRTAPRIDTVLPAFLE--FAGGAVLVAHNAGFDVGFLKAAAARQGLPWPKFQVLCTVKL 144

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             R         +        +       H AL D+    DV   ++  
Sbjct: 145 ARRVLGRDEAPSVKLSALAALLGADTTPTHRALDDARATVDVLHALIGR 193


>gi|294622016|ref|ZP_06701159.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium U0317]
 gi|291598406|gb|EFF29480.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium U0317]
          Length = 929

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++   +    ++AHN  FD  F+N EL R     L    I     
Sbjct: 64  RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184
                       L  L +  G      + H A  D+ +   + +   + M     I   
Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178


>gi|270290316|ref|ZP_06196541.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
 gi|270281097|gb|EFA26930.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
          Length = 1436

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 70/190 (36%), Gaps = 5/190 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++FD+ETTGL +  D++IE+ AV++ + +  +  F+ F+ P           ++  + 
Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDE-FEEFIDPG---FPLSETTINLTSI 474

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                + S S            ++A  + HN  FD+GF+N    R   + +    I    
Sbjct: 475 TNEMVRGSLSEKEVFTKFREFYEDAIIVGHNVTFDIGFMNTGYLRHGMEEIKNPIIDTLT 534

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                        LN+L K++ + + H                Y+ +     +    +  
Sbjct: 535 LARFLYPTLKGYRLNTLAKKFNVALEHH-HRAIYDAETTGHLCYLFLKDAEERYGIEYHD 593

Query: 188 NEDRFFKEEK 197
             +    E  
Sbjct: 594 QLNDHMTEND 603


>gi|260437725|ref|ZP_05791541.1| DNA polymerase III PolC-type [Butyrivibrio crossotus DSM 2876]
 gi|292809747|gb|EFF68952.1| DNA polymerase III PolC-type [Butyrivibrio crossotus DSM 2876]
          Length = 234

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI+      +  D+ETTGL   +++IIE+GAV   D    ++ +   + P G        
Sbjct: 1   MIKD----FVAIDLETTGLSPYDNKIIELGAVRYRDGKPVDQ-YNTLINP-GVHIPERIT 54

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           ++ GI D+ +   P          +F    N   + HN  FD  FI
Sbjct: 55  EITGIDDDMVSKAPYIDDELDRIMEFI--GNDVILGHNVIFDYTFI 98


>gi|199597102|ref|ZP_03210534.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
 gi|199591906|gb|EDY99980.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
          Length = 1444

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 6/166 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P         L ++     
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDPG---FPLSELTINLTHIT 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 S S              A  + HN  FDVGF++   +R     +D   I     
Sbjct: 477 DDMVHGSKSEEEVFRLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLEL 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                     + L++L K+Y +++ H   H A  D+     +   +
Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEH--HHRANADAEATGYLLYAL 580


>gi|281491483|ref|YP_003353463.1| DNA polymerase III subunit epsilon [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375201|gb|ADA64714.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis
           KF147]
          Length = 277

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 4/167 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFD ETTG  ++ + II+IGAV+  + ++    F   +       S E  +L GI  
Sbjct: 4   KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYVSTEITQLTGIKP 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L ++P+   I  EF DF        +AHNA FD+ F+   +       ++  R+ DTL
Sbjct: 64  ADLLNQPTIEEILPEFLDFIKG--HLLVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++    S   L +        ++    H AL D  + + +Y  +
Sbjct: 122 AESKKLLTMSSYALENFKDLL--EMNDLRSHDALNDCLITAKLYQYL 166


>gi|269127278|ref|YP_003300648.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
           43183]
 gi|268312236|gb|ACY98610.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
           43183]
          Length = 605

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 9/180 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG    +  I E+GAV++    +    F   + P G    P    L GIT +
Sbjct: 44  FVVVDLETTGGSPADSAITEVGAVKVRGGERLGE-FATLVDP-GVPIPPFITALTGITQQ 101

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR----II 124
            + + P  S++   F +    +    +AHNA FD+GF+ A     +             +
Sbjct: 102 MVTNAPPMSAVLPAFLE--FARGCVLVAHNAPFDIGFLRAACTAHDHPWPAFPVVDTADL 159

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
               + R + P+ +    +   R G    HR+   A     +L  + I+ +      +  
Sbjct: 160 ARRVLTREEVPNCKLATLARYFRTGTEPCHRALADARATVDVLHGL-IERLGSYGVHSLE 218


>gi|169334141|ref|ZP_02861334.1| hypothetical protein ANASTE_00535 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258858|gb|EDS72824.1| hypothetical protein ANASTE_00535 [Anaerofustis stercorihominis DSM
           17244]
          Length = 204

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 5/161 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTGL+   + IIE+GAV++ D    +  F  F+ P     SPE  KL GI +  +
Sbjct: 26  VIDIETTGLNPDENEIIEVGAVKVRDRKIVDE-FSSFVSPKKDIISPEIRKLTGIDEAMI 84

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +       +   F +F +      + HN  FD+ F+    +R +   L    +       
Sbjct: 85  EGADQIEDVIPRFNEFIDG--EILLGHNVNFDINFLYDNYERYSDFYLSNDYVDLLKISR 142

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +       + L ++ K+ GI      +H A+ D       +
Sbjct: 143 KLSPEFENHKLETVLKKLGIK--VDQQHRAVSDCIDAHHCF 181


>gi|257883091|ref|ZP_05662744.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257818749|gb|EEV46077.1| DNA polymerase III [Enterococcus faecium 1,231,502]
          Length = 929

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++   +    ++AHN  FD  F+N EL R     L    I     
Sbjct: 64  RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184
                       L  L +  G      + H A  D+ +   + +   + M     I   
Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178


>gi|257879980|ref|ZP_05659633.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|257894416|ref|ZP_05674069.1| DNA polymerase III [Enterococcus faecium 1,231,408]
 gi|257814208|gb|EEV42966.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|257830795|gb|EEV57402.1| DNA polymerase III [Enterococcus faecium 1,231,408]
          Length = 929

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++   +    ++AHN  FD  F+N EL R     L    I     
Sbjct: 64  RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184
                       L  L +  G      + H A  D+ +   + +   + M     I   
Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178


>gi|295425759|ref|ZP_06818444.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664]
 gi|295064567|gb|EFG55490.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664]
          Length = 318

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 78/232 (33%), Gaps = 14/232 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIETTGL    DR+IE+GA+++ +    +  +   +  +     P  +       E   
Sbjct: 36  LDIETTGLSPYRDRVIELGAIKVRNGEIVDE-YSHLVAYDKSNCVPAFITKLNGITEEKI 94

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                    +         +   I +N  FD+ FI    ++ +   L+ + +        
Sbjct: 95  INEGIPVAEAIHDFRQFIGDDVIIGYNVNFDLNFIYDLAKKYHLPELNNNYVDVLRLARA 154

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--------IKMMVGGSQINF 183
                  N L    +R GI      +H  L DS     VY          ++V   +   
Sbjct: 155 YYPKERHNRLIDCMQRAGIA--QVEQHRGLDDSIDTKKVYDDFHAHFTPNLLVQAQKKIK 212

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            F   +++    +      ++  K       ++  E+    +K I  LG  A
Sbjct: 213 NFSLTDEKLSPWQIGFRNPVNNKKIVLTDHLKMNLEDA---NKMIDNLGGQA 261


>gi|257469515|ref|ZP_05633607.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|317063759|ref|ZP_07928244.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|313689435|gb|EFS26270.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
          Length = 1446

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 6/175 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ET GL+S    IIEIGAV+L       R +   + P  +    +  +L  I+ +
Sbjct: 420 FVVFDLETMGLNSHEHEIIEIGAVKLQGTRIVER-YSQLVNPK-KPIPKKIQELTNISQD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P+   +  +F +F  +      AHNA FD+GFI  ++++       P+ I     
Sbjct: 478 MVDNMPTIEEVLPKFMEFVGDSTMV--AHNAPFDMGFIRRDVKKFMGYDYKPAVIDTLQM 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                       L +L K  G++    + H A+ DS   ++++I  +    +   
Sbjct: 536 ARDLYPELKAYGLKNLNKVLGLS--LDNHHRAVDDSQATANMFIIFIEKYMEKGI 588


>gi|296140382|ref|YP_003647625.1| DNA polymerase III subunit epsilon [Tsukamurella paurometabola DSM
           20162]
 gi|296028516|gb|ADG79286.1| DNA polymerase III, epsilon subunit [Tsukamurella paurometabola DSM
           20162]
          Length = 610

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 5/176 (2%)

Query: 9   KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+ETTG   K  D I EIGAV++         F   + P  R  +P    L GIT 
Sbjct: 22  FVVVDLETTGGSPKGGDAITEIGAVKVRGGEVLGE-FATLVDPE-RGIAPHITHLTGITT 79

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P+ +S+   F +    Q A  +AHNA+FD+GF+ A           P  +    
Sbjct: 80  AMVTGAPTIASVLPAFLE--FAQGAVLVAHNARFDIGFLKAAAAATGTPWPKPQTLCTVQ 137

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
              R         +                H AL D+    DV   ++     +  
Sbjct: 138 LARRVLTRDEAPSVKLSEMARLFRAETTPTHRALDDARATVDVLHGLIGRVGNLGI 193


>gi|241662069|ref|YP_002980429.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12D]
 gi|240864096|gb|ACS61757.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
          12D]
          Length = 216

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +  D ETTGL+ + D I+ IGAV ++ +   T+   ++ + P G          
Sbjct: 38 WVALDCETTGLNVRTDEIVSIGAVRIVGNRILTSERMELLIRPQGEMRPESICVH 92


>gi|288574409|ref|ZP_06392766.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570150|gb|EFC91707.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 193

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 3/141 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGL ++ DRI+EIGA+     S+T  +FQ F+ P GR    EA+ +HGITDE
Sbjct: 10  FVAIDVETTGLSNRWDRIVEIGAIRFTPGSET-ESFQTFVSP-GRPIPSEAVAIHGITDE 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P  S        F  +     + HN  FD+GF++A ++ I               
Sbjct: 68  MVEGAPGLSEASIALASFLKD-EEPMVFHNPSFDLGFLDANMRAIKGSWNVMPVFDTCGL 126

Query: 129 IARRKHPSSRNDLNSLCKRYG 149
             +         L +L + +G
Sbjct: 127 ARKAFPGIKGYSLVALARHFG 147


>gi|313124719|ref|YP_004034978.1| DNA polymerase iii polc-type [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312281282|gb|ADQ62001.1| DNA polymerase III PolC-type [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 298

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 11/179 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTGL +  D +IEIG + + +   T+R ++  + P   +       L GIT+E
Sbjct: 12  YCVLDTETTGLSAYYDEVIEIGILRVRNGEITDR-YEQLIKPE-NEIDGFITSLTGITNE 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + DKP+   + S+   F        + HN  FDV F+ A       +       +DT+ 
Sbjct: 70  MVADKPAIEDVKSDVLAFLGS--DIIVGHNTSFDVRFLAAGFHEDIAN-----EYMDTMQ 122

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            AR+ +P   +   S            ++H AL D     ++Y  M     +   G K 
Sbjct: 123 FARKLYPDLTHHRLS--DLSEYLYLTNNEHRALADCVTTEELYEAMKTEMIRKGLGIKD 179


>gi|257094696|ref|YP_003168337.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047220|gb|ACV36408.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 729

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 8/174 (4%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGL   + D II+IGA  +++     +  F   + P  R  S +++++HGIT E
Sbjct: 541 VFDTETTGLQPSQGDEIIQIGATRIVNRRLLRHECFDQLIDP-RRPLSQQSIEVHGITRE 599

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  +P+  ++  +F  F  +     + HNA FD+ F+  + ++       P      LS
Sbjct: 600 LLVGQPTIDTVLPQFQTFCAD--TVLVGHNAAFDMRFLQLKEKQTGVRFDQPVLDTLLLS 657

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            A      + + L ++ +R G+++  R  H AL D+ +  +V++KM+   +++ 
Sbjct: 658 -AVLHPNQNSHRLEAIAERLGVSVFGR--HTALGDAMVTGEVFLKMLPLLAEMG 708


>gi|147814790|emb|CAN74413.1| hypothetical protein VITISV_042394 [Vitis vinifera]
          Length = 340

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 61/206 (29%), Gaps = 9/206 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD ETTGL   NDRIIEIG  +L      N TFQ  + P  R      +         
Sbjct: 137 IVFDTETTGLSRANDRIIEIGLQDLGGGE--NSTFQTLVNPE-RIVPNPHVHGITTYMVN 193

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124
             D P +  +      +   +        W+AHN +                 + P+   
Sbjct: 194 RPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPNWRF 253

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                  R+   S                +           +LSDVY  +      + F 
Sbjct: 254 MDTLPLAREFIKSAGSDLPSGASLQALREYFRIPLVGPAHRVLSDVYT-LSQILQMLTFN 312

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDK 210
            K +              I+  K+  
Sbjct: 313 LKVSVANLLDRSFTASDIINPKKKKN 338


>gi|332686699|ref|YP_004456473.1| DNA polymerase III subunit alpha [Melissococcus plutonius ATCC
           35311]
 gi|332370708|dbj|BAK21664.1| DNA polymerase III alpha subunit [Melissococcus plutonius ATCC
           35311]
          Length = 1450

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P    +      +H     
Sbjct: 425 YVVFDVETTGLSAVYDTIIELSAVKMHKGNVI-DTFEQFINPG---HPLSQTTIHLTGIT 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 + S            +N   +AHNA FD+GF+N   ++      +   I     
Sbjct: 481 NEMVSDAKSEKVVLNMFKKFSENTILVAHNAAFDMGFLNTSYRKYKIPEAENPVIDTLEL 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN L K++G+       H A+ DS       +I +     + +  +  
Sbjct: 541 ARYLYPTLKSHRLNVLAKKFGVG--LEQHHRAIYDSEATGHLCWIFLKETKEKFSMNYHD 598

Query: 188 NEDRFFKEEKKTVPNISL 205
             +    E          
Sbjct: 599 ELNMHIGEGDSYKRARPF 616


>gi|238060312|ref|ZP_04605021.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
 gi|237882123|gb|EEP70951.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
          Length = 604

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 67/206 (32%), Gaps = 4/206 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       I EIGAV++    +        + P G    P    L GIT  
Sbjct: 52  FVVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITQA 109

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P    +   F +F  +  A  +AHNA +DVGF+ A   R      +P  +     
Sbjct: 110 MLVPAPPIEQVLPSFLEFVAD--AVLVAHNAPYDVGFLKAACARHGYRWPNPRVLDTAAL 167

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             R        +            + R  H AL D+    DV   ++             
Sbjct: 168 ARRVLGRDEVPNRKLGTLASYFRTATRPTHRALDDAKATVDVLHGLIARLGGHRVDTVGE 227

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
              F +    T      L    P   
Sbjct: 228 AIEFARAVTPTQRRKRHLADGLPKVP 253


>gi|293553821|ref|ZP_06674436.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1039]
 gi|291602027|gb|EFF32264.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1039]
          Length = 929

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++   +    ++AHN  FD  F+N EL R     L    I     
Sbjct: 64  RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184
                       L  L +  G      + H A  D+ +   + +   + M     I   
Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178


>gi|261417986|ref|YP_003251668.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus sp. Y412MC61]
 gi|319767201|ref|YP_004132702.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y412MC52]
 gi|261374443|gb|ACX77186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y412MC61]
 gi|317112067|gb|ADU94559.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y412MC52]
          Length = 909

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 7/177 (3%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++ D+ETTG    K DRII++G   + D     R F  F  P  +       +L  I 
Sbjct: 4   RFVIIDLETTGNGPKKGDRIIQLGMAVVEDGLIVER-FASFFNPE-QPIPLFIQQLTNIN 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++  P F+    E     +       AHN  FD+ F+ AEL+R    P     I   
Sbjct: 62  EQMVEGAPLFADKAGEIAALMHGAYFV--AHNVDFDLPFLQAELERAGWPPFAGPTIDTV 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                    +    L  L ++ G+       H A  D+ + + ++I ++   S++  
Sbjct: 120 ELARIVLPTAESYKLGDLARQLGLRHDRP--HQADSDAEVTAKLFIALLKRLSRLPL 174


>gi|154492230|ref|ZP_02031856.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC
           43184]
 gi|154087455|gb|EDN86500.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC
           43184]
          Length = 256

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 70/206 (33%), Gaps = 8/206 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG++   DRI+EI  V++  +  + ++T    + P      PE+  +HGITDE
Sbjct: 10  VFFDLETTGINIVKDRIVEISFVKVYPNGKEESKT--RRINPE-MPIPPESTAIHGITDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P+F  I           +      N           L+      L+  + +D  +
Sbjct: 67  DVKDCPTFKEIAKSLAAQIEGCDLAGYNSNRFDIPLLAEEFLRAGVDIDLNKRKFVDVQT 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I  +          +   ++    S  + H A  D+    +V    +    ++       
Sbjct: 127 IFHK----MEQRTLAAAYKFYCDKSLENAHTAEADTMATYEVLKAQLDRYPELQNDINFL 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
                           +         
Sbjct: 183 SQYSSYTNNVDFAGRMVYNDKGEEVI 208


>gi|116492651|ref|YP_804386.1| DNA polymerase III PolC [Pediococcus pentosaceus ATCC 25745]
 gi|122265885|sp|Q03FS8|DPO3_PEDPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116102801|gb|ABJ67944.1| DNA polymerase III catalytic subunit, PolC type [Pediococcus
           pentosaceus ATCC 25745]
          Length = 1437

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 73/190 (38%), Gaps = 5/190 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++FD+ETTGL +  D++IE+ AV++ + +  ++ F+ F+ P           ++  + 
Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDQ-FEEFIDPG---FPLSETTINLTSI 474

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                + S S            ++A  + HN  FD+GF+N    R   + +    I    
Sbjct: 475 TDEMVRGSMSEKEVFTKFREFYEDAIIVGHNVTFDIGFMNTGYLRHGMEEIKNPIIDTLT 534

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                        LN+L K++G+ + H                Y+ +     +    +  
Sbjct: 535 LARFLYPTLKGYRLNTLAKKFGVALEHH-HRAIYDSETTGHLCYLFLKDAEERYGIEYHD 593

Query: 188 NEDRFFKEEK 197
             +    E +
Sbjct: 594 QLNDHMTENE 603


>gi|184155667|ref|YP_001844007.1| helicase [Lactobacillus fermentum IFO 3956]
 gi|183227011|dbj|BAG27527.1| helicase [Lactobacillus fermentum IFO 3956]
          Length = 943

 Score = 69.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 76/226 (33%), Gaps = 12/226 (5%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           M +K + R     V D+ETTG   K   RII+IG V + D       F+  + P      
Sbjct: 1   MAKKKR-RGPVYAVVDLETTGTSVKTGSRIIQIGCVLVQDGQVI-NEFETKINP-RTVVP 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
               +L GI +  +KD P F  +        ++        N  F       E       
Sbjct: 58  LTIEQLTGIKNNDVKDAPLFEDVAPTLKSLLDDTIFVAHNVNFDFPFLNAEFERAGEAPL 117

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM- 175
            +     +    I     PS R    +      + I H   H A+ D+   + + I+++ 
Sbjct: 118 TIPAIDTVTLSQILMPTAPSFRLRDLTSY----LAIDHDQPHSAVSDAVATAHLLIELLK 173

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
                     ++  D      +KT          + +  +  KEEL
Sbjct: 174 RLADLPTITLQSIVDLQLTLPQKTAWLFERELAKRAVEPQPLKEEL 219


>gi|296110428|ref|YP_003620809.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc
           kimchii IMSNU 11154]
 gi|295831959|gb|ADG39840.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc
           kimchii IMSNU 11154]
          Length = 1437

 Score = 69.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 6/169 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL +  D+IIE+ AV++   +   + F  ++ P G   S    KL  ITD 
Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVKMQLGNVIEK-FSEYINP-GFPLSDFTTKLTSITDT 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    +  +I + F  +  +  A  I HN  FD+GF+NA   R N+  +    I     
Sbjct: 477 MVAHADTEENIITRFRKWIGD--AVLIGHNVTFDIGFMNAAYARYNQTVIKNPVIDTLPF 534

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                       L +L KR+   I+    H A+ D+     +  +++  
Sbjct: 535 TRWLYPDYKSYRLGTLAKRFN--INLEQAHRAIFDAETTGHIAWRLIKE 581


>gi|291300433|ref|YP_003511711.1| exonuclease RNase T and DNA polymerase III [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569653|gb|ADD42618.1| Exonuclease RNase T and DNA polymerase III [Stackebrandtia
           nassauensis DSM 44728]
          Length = 410

 Score = 69.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 93/256 (36%), Gaps = 29/256 (11%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             VFD ETTG+    + RIIEI  V   D      T+   L P           +HGI  
Sbjct: 2   YAVFDTETTGIIPGMHHRIIEIAVVLADDEGSIENTWSTLLNP---DRDLGPQHIHGIKA 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDT 126
             + D P F  I  +     +      +AHN  FD+ F++AE +R+           + T
Sbjct: 59  RQVIDAPKFGDIAGQLIQMLSG--RTLVAHNLPFDLRFLSAEFERLGHQLTYNHHLGVCT 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS-QINFGF 185
           ++ +      +   L   CK  G+       H AL D+   + +    +      + +  
Sbjct: 117 MNWSTTFLEGASRSLPECCKAAGVQ--LTGWHSALSDAEATAALLKHYINAARGGVPWHD 174

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP----------------LFTRITKEELDEHDKTIQ 229
           +    R        V N  + +R+                     R+   E+   D  + 
Sbjct: 175 RLPLSRSCTWPTVPVTNAHVRQRESVPHKPSHGDPFISALVDYLPRVQSSEVS--DPYLA 232

Query: 230 TLGKNAIWDRYISSNQ 245
            L + A+ DRY+S+++
Sbjct: 233 VLDE-ALSDRYLSADE 247


>gi|306845957|ref|ZP_07478524.1| DNA polymerase III, epsilon chain [Brucella sp. BO1]
 gi|306273592|gb|EFM55437.1| DNA polymerase III, epsilon chain [Brucella sp. BO1]
          Length = 235

 Score = 69.6 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 7/218 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGDELLTQSLYLIFDP-RKDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +      E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  IHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDIHYIQREFRKAEVDMLDQP 125

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                    R       +     C           +HGAL D++L + +Y+        +
Sbjct: 126 VYCTMEGARRLW--RGDSAKLDHCLAKIGLARTGYRHGALEDAYLTAGLYLHQQGVAKPL 183

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                    +  K   +       L R  P     T +
Sbjct: 184 PKINSWQPPKNLKPYPE--RPAGELPRRTPKRKNATAK 219


>gi|295703510|ref|YP_003596585.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium
          DSM 319]
 gi|294801169|gb|ADF38235.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
          megaterium DSM 319]
          Length = 933

 Score = 69.6 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 8  RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          R +V D+ETTG   K  D++I+  AV + D     R F  FL P G    P   +L  I 
Sbjct: 4  RFVVVDLETTGHSPKQGDKMIQFAAVIVEDGKIVER-FSSFLNP-GMDIPPFITQLTNIQ 61

Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAE 93
          ++ +K  P F  I  +  +  ++    
Sbjct: 62 NDMVKGAPLFEEISPKIIELLDDAYFV 88


>gi|197337514|ref|YP_002157585.1| DNA polymerase III epsilon subunit [Vibrio fischeri MJ11]
 gi|197314766|gb|ACH64215.1| DNA polymerase III epsilon subunit [Vibrio fischeri MJ11]
          Length = 212

 Score = 69.6 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 5/97 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   + DR IEIGAV+L +    +R FQ  + P G + S       GI++ 
Sbjct: 16  VVLDFETTGLSPNQGDRAIEIGAVKLENGVVVDR-FQGLMNP-GFRVSSFIENYTGISNR 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            L D  S   + +EF +F    N   +AHNA FD  F
Sbjct: 74  MLADAASCDEVMNEFANFIQGCN--LVAHNASFDKRF 108


>gi|154246367|ref|YP_001417325.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
 gi|154160452|gb|ABS67668.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
          Length = 719

 Score = 69.6 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 8/175 (4%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGLD    D I++IGA  +++     +  F   + P  R      + +HGI  E
Sbjct: 531 VFDTETTGLDPAGGDEILQIGATRIVNGRLLASECFDQLVDPQ-RSIPEAGIAVHGIRPE 589

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ KP+   +   F       +   + HN  FD+ F+  +          P      L+
Sbjct: 590 MVRGKPTLPQVLPAFHA--FAADTVLVGHNVAFDMRFLTLKENASGVRFDQPVLDTLLLA 647

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                   S        +   + I+   +H AL D+   +++++K++    Q   
Sbjct: 648 AIVHPGEDSHGLEAMAAR---LGIAVSGRHTALGDALATAEIFLKLLPLLRQRGI 699


>gi|294498159|ref|YP_003561859.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium
          QM B1551]
 gi|294348096|gb|ADE68425.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
          megaterium QM B1551]
          Length = 933

 Score = 69.6 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 8  RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          R +V D+ETTG   K  D++I+  AV + D     R F  FL P G    P   +L  I 
Sbjct: 4  RFVVVDLETTGHSPKQGDKMIQFAAVIVEDGKIVER-FSSFLNP-GMDIPPFITQLTNIQ 61

Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAE 93
          ++ +KD P F  I  +  +  ++    
Sbjct: 62 NDMVKDAPLFEEISPKIIELLDDAYFV 88


>gi|320011539|gb|ADW06389.1| DNA polymerase III, epsilon subunit [Streptomyces flavogriseus ATCC
           33331]
          Length = 346

 Score = 69.6 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 75/202 (37%), Gaps = 8/202 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L         +   + P      P  + +HG+T +
Sbjct: 32  YAVVDVETTGL-ARDDRIISAAVYRLDARGDVEDHWYTLVNPER---DPGPVWIHGLTSD 87

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  + +E  +         +AHNA FD   I  E  R         R+     
Sbjct: 88  VLEGAPLFPQVAAELSERLAG--RVLVAHNAAFDWSMIAREYARAAVTAPVEQRLCTIAL 145

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
               + P   + L SL   +G+   H   H AL D+ +L++ +   +   ++        
Sbjct: 146 AKELRLPLPNHKLESLAAHFGVVQQHA--HHALDDARVLAEAFRPSLHAAAKGGVRLPLL 203

Query: 189 EDRFFKEEKKTVPNISLLKRDK 210
           E R   E   +        R  
Sbjct: 204 ECRPLTEWYDSPVTPRAGYRPS 225


>gi|255070749|ref|XP_002507456.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
 gi|226522731|gb|ACO68714.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
          Length = 1473

 Score = 69.6 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--D 67
           +VFD+ETTGL+   +RIIEI AV + D   T++     + P      P  + L GIT   
Sbjct: 296 VVFDLETTGLNKDRNRIIEIAAVNVSD--PTHQPMSTLVNPGRFAVPPPVVALTGITNAM 353

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
                 PSF      F ++ +E       
Sbjct: 354 VSAPAVPSFQRAAELFQEYIDEARRRCGG 382


>gi|15614981|ref|NP_243284.1| DNA polymerase III PolC [Bacillus halodurans C-125]
 gi|13959348|sp|Q9KA72|DPO3_BACHD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|10175038|dbj|BAB06137.1| DNA polymerase III (alpha subunit) [Bacillus halodurans C-125]
          Length = 1433

 Score = 69.6 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  ++IIE+ AV++ +    +R F+ F  P+    +   ++L GITD+
Sbjct: 419 FVVFDVETTGLSAVYNKIIELAAVKVKNGEIIDR-FERFADPH-EPLTNTIIELTGITDD 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK +P    + +EF  F  +  A  +AHNA FD+GF+N   Q++         I     
Sbjct: 477 MLKGQPEVEQVLNEFHAFIGD--AVLVAHNASFDMGFLNTGFQKMGLGEAKNPVIDTLEL 534

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK++   I   S H A+ D+     +  +M+   ++ +  +   
Sbjct: 535 GRFLYPTLKNHRLNTLCKKF--DIELVSHHRAIYDAEATGHLLWRMVKDATERDILYHDQ 592

Query: 189 EDRFFKEEKKTVPNIS 204
            +    E        S
Sbjct: 593 LNDNMGEGNFHRQRPS 608


>gi|297161567|gb|ADI11279.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
           BCW-1]
          Length = 324

 Score = 69.6 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 75/209 (35%), Gaps = 8/209 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+     +L         +   + P      P  + +HG+T +
Sbjct: 22  YAVVDVETTGL-ARDDRIVSAAVYQLDARGAVQDHWYTLVNPQR---DPGPVWIHGLTSD 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P FS I  E     +      +AHNA FD   +  E  R         R+     
Sbjct: 78  TLADAPLFSEIADELAQHLDG--RVLVAHNAVFDWSMLAREYARAGSAAPVRQRLCTIAL 135

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                 P   + L SL   YG+       H AL D+ +L++ +   +   +         
Sbjct: 136 SKELGLPLPNHKLESLAAHYGVV--QERAHHALDDARVLAETFRPSLHAAAAGGLRLPLL 193

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
             +   E       I   +  +    R +
Sbjct: 194 ACQPLTEWSDAPRPIGYQRSYRATSWRAS 222


>gi|291563198|emb|CBL42014.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
           bacterium SS3/4]
          Length = 1376

 Score = 69.6 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
            +VFDIETTG     ++IIEIGAV++ +    +R    F+ P 
Sbjct: 415 YVVFDIETTGFSPIKNKIIEIGAVKVRNGEIIDRM-DEFVNPE 456


>gi|23099217|ref|NP_692683.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Oceanobacillus iheyensis HTE831]
 gi|22777446|dbj|BAC13718.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 939

 Score = 69.6 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 7/178 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D+ETTG    KND+IIEIG V +        T   F  P G+   P    L GI+
Sbjct: 3   RFVVIDLETTGHAPSKNDKIIEIGMVIIEGDEII-DTKTTFFNP-GQPIPPFITNLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ + D P F+           +      AHN  FD+GF+NAEL+    D L    +   
Sbjct: 61  DDDVADAPLFTEKALSIKSILEDSYII--AHNVNFDLGFLNAELKENGIDRLHNQVLDTV 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                    +    L+ L   + +       H AL D+++ + ++ K+M   +Q+ + 
Sbjct: 119 ELSRILFPTAPGYKLSQLSDHFNLQH--DDPHRALSDAYVTAKLFQKLMDKINQLPYE 174


>gi|298244072|ref|ZP_06967878.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297551553|gb|EFH85418.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 1009

 Score = 69.6 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 72/188 (38%), Gaps = 11/188 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K+ +R I  D+ETTGL ++ D I+E+ A++    S+   TF+ F+ P GR       
Sbjct: 1   MAKKSAIR-IALDLETTGLHAEQDAILEVAAIKF-QGSEVLDTFETFISP-GRSIPYRVQ 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GI  E L   P F        D  + Q   ++                         
Sbjct: 58  RLTGIKPELLVGAPPF--------DAISRQLHTFLGDYPIVGHSIPFDVGFLRRWGLAHS 109

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           + ++DT  +A    PS  +                 +H A++D+ L   V++ +      
Sbjct: 110 NPMVDTFELATVLLPSLSSYNLGQVAHSLGIQVPSDRHRAMVDTVLAMQVFLSLYERLQT 169

Query: 181 INFGFKTN 188
           ++     +
Sbjct: 170 VDLALLQD 177


>gi|260663059|ref|ZP_05863952.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           fermentum 28-3-CHN]
 gi|260552680|gb|EEX25680.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           fermentum 28-3-CHN]
          Length = 946

 Score = 69.6 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 71/215 (33%), Gaps = 8/215 (3%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K   RII+IG V + D       F+  + P          +L GI +
Sbjct: 14  YAVVDLETTGTSVKTGSRIIQIGCVLVQDGQVI-NEFETKINP-RTVVPLTIEQLTGIKN 71

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +KD P F  +        ++        N  F       E        +     +   
Sbjct: 72  NDVKDAPLFEDVAPTLKSLLDDTIFVAHNVNFDFPFLNAEFERAGEAPLTIPAIDTVTLS 131

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGFK 186
            I     PS R    +      + I H   H A+ D+   + + I+++           +
Sbjct: 132 QILMPTAPSFRLRDLTSY----LAIDHDQPHSAVSDAVATAHLLIELLKRLADLPTITLQ 187

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           +  D      +KT          + +  +  KEEL
Sbjct: 188 SIVDLQLTLPQKTAWLFERELAKRAVEPQPLKEEL 222


>gi|281419997|ref|ZP_06250996.1| exonuclease [Prevotella copri DSM 18205]
 gi|281405797|gb|EFB36477.1| exonuclease [Prevotella copri DSM 18205]
          Length = 287

 Score = 69.6 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 79/213 (37%), Gaps = 6/213 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGLD   DRII+I  ++++     +R   +++ P   +   E + L GI++E 
Sbjct: 10  IVFDLETTGLDMIKDRIIQISYIKVMPDGTEDRK-NLYVNP-CMEIPAEVVALTGISNED 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P+F  + +     F   +      N           L+       +  R+ID  +I
Sbjct: 68  VKDAPTFKQLAATLEKEFTGCDFAGYNSNHFDVPMLAEEFLRAGIDFDFNKCRLIDAQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          +   ++           A          Y  +M    +   G +   
Sbjct: 128 FMK----MERRNLAAAYKFYCGRKMEEDFEAHRADQDTEATYRVLMGELDKYAPGVQDEP 183

Query: 190 DRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
           +R        + + S  K +     RI  EE+ 
Sbjct: 184 ERVLNNNMDELADFSKQKDNVDFAGRIVWEEVK 216


>gi|114773251|ref|ZP_01450486.1| hypothetical protein OM2255_00307 [alpha proteobacterium HTCC2255]
 gi|114546370|gb|EAU49279.1| hypothetical protein OM2255_00307 [alpha proteobacterium HTCC2255]
          Length = 313

 Score = 69.6 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 5   NKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N M+  +V DIETTG  + + +I EIG V++++    +  +Q  L P  R+       L 
Sbjct: 137 NPMQPYVVVDIETTGGRATSHKITEIGMVKVINGQVVDE-YQTLLNPK-RRIPRNITALT 194

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           GI D  + + P F+ +  E       +   ++AHN  FD GFI  E 
Sbjct: 195 GIDDVMVSNAPIFAEVADEVAQ--FTKGCVFVAHNVNFDYGFIKQEF 239


>gi|295689870|ref|YP_003593563.1| exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC
           21756]
 gi|295431773|gb|ADG10945.1| Exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC
           21756]
          Length = 298

 Score = 69.6 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 72/241 (29%), Gaps = 33/241 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL---DYSK--TNRTFQVFLCPNGRKNSPEALKLHG 64
           IV D+ETTGLD   D IIE G V                F     P+G    P+  KL G
Sbjct: 45  IVLDLETTGLDPAKDEIIEFGLVPFTYDAGGRIVAVGEPFSRLRQPSG-PIPPDVTKLTG 103

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +TD  +  +     +       F +  A  IAHNA FD  F  A      + P       
Sbjct: 104 LTDAMVAGQ----VVDPAEVATFIDGAALIIAHNAGFDRRFAEAFCPAFAQKPW------ 153

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV------------YI 172
              S  +    +  ++   L             H A  D     ++            + 
Sbjct: 154 -ACSYTQIDWQAHGHESGKLAFLACAYGFFHDGHRAHHDCLATLEILASPLGATDGSAFQ 212

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNIS----LLKRDKPLFTRITKEELDEHDKTI 228
            ++    + +         F  ++                 +  +  + + + D     +
Sbjct: 213 TLLATARRASVRIWAENSPFDLKDVLKARGYRWSGDPGPSPRAWWIDVDEADKDAELAFL 272

Query: 229 Q 229
           Q
Sbjct: 273 Q 273


>gi|254000498|ref|YP_003052561.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4]
 gi|253987177|gb|ACT52034.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4]
          Length = 470

 Score = 69.2 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 7/163 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG     DRI EI  +   +  + +R +Q  + P      P   +L GI D 
Sbjct: 5   YVLLDLETTGATPLVDRITEIALIRFENGQEVSR-WQTLVNPETA-IPPFIQRLTGIDDG 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F  +  E  +      A   AHN +FD GF+  E +RI  D     +++ T+ 
Sbjct: 63  MVATAPRFREVAGELLNHLEG--AVLCAHNVRFDHGFLKNEFKRIGID--LRQKVLCTVK 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           ++R+ +P  R+                ++H A+ D   L D  
Sbjct: 119 LSRKLYPQHRSHSLDSIIERHSLQC-GARHRAMGDVVALVDFL 160


>gi|257065507|ref|YP_003145179.1| exonuclease, DNA polymerase III, epsilon subunit family [Slackia
           heliotrinireducens DSM 20476]
 gi|256793160|gb|ACV23830.1| exonuclease, DNA polymerase III, epsilon subunit family [Slackia
           heliotrinireducens DSM 20476]
          Length = 986

 Score = 69.2 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 12/185 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+ +N    +V D ETTGL   +D + +I A  +     T   F  F+ P G+    E +
Sbjct: 1   MLDRN---LVVLDTETTGLSYNHDELTQIAAARMECGEIT-DWFVTFVNP-GKPIPDEIV 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L  I DE + D P+     +   +F  +      AHNA FD    +   +  + + L+ 
Sbjct: 56  RLTNIHDEDVVDAPTPDEARALLAEFIGDAYVV--AHNADFDK---HFCTKSESGECLNR 110

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  +D+L++AR   P  ++    L        +  S H A  D   L  VY  ++   + 
Sbjct: 111 NIWVDSLALARIALPRMKSHR--LIDLVHAFDAPISTHRADADVEALCAVYRILLSAVAT 168

Query: 181 INFGF 185
           +    
Sbjct: 169 MPPDL 173


>gi|294673575|ref|YP_003574191.1| DNA polymerase III subunit epsilon [Prevotella ruminicola 23]
 gi|294472509|gb|ADE81898.1| putative DNA polymerase III, epsilon subunit [Prevotella ruminicola
           23]
          Length = 285

 Score = 69.2 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 73/202 (36%), Gaps = 10/202 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL--LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           ++FD+ETTGLD   DRII+I  +++    + +        + P  +   P   +L GI++
Sbjct: 10  VIFDLETTGLDLVKDRIIQISYIKVYPDGHEERGNE---LVNPE-KPIEPMITQLTGISN 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +KDKP+F  + +   + F   +      N           L+          ++ID  
Sbjct: 66  DDVKDKPTFKQLGAVLAEKFTGCDFAGFNSNHFDIPLLAEEFLRAGVDFDFSKCKMIDAQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +I  +          +   ++           A          Y  +M    +   G   
Sbjct: 126 TIFHK----MERRNLAAAYKFYCGRKMEEDFEAHRADQDTEATYRVLMGELDKYAPGANE 181

Query: 188 NEDRFFKEEKKTVPNISLLKRD 209
           + ++  + +   +   S +  +
Sbjct: 182 DPEKVLENDMNKLAEFSRVNNN 203


>gi|148543926|ref|YP_001271296.1| DNA polymerase III PolC [Lactobacillus reuteri DSM 20016]
 gi|184153322|ref|YP_001841663.1| DNA polymerase III PolC [Lactobacillus reuteri JCM 1112]
 gi|227364835|ref|ZP_03848882.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3]
 gi|325682539|ref|ZP_08162056.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A]
 gi|166918295|sp|A5VJD5|DPO3_LACRD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|148530960|gb|ABQ82959.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           reuteri DSM 20016]
 gi|183224666|dbj|BAG25183.1| DNA polymerase III alpha subunit [Lactobacillus reuteri JCM 1112]
 gi|227070098|gb|EEI08474.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3]
 gi|324978378|gb|EGC15328.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A]
          Length = 1443

 Score = 69.2 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 78/198 (39%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL +  D++IE+ AV++ D +   R F  F+ P G   S +   L  IT E
Sbjct: 426 YVIFDVETTGLSAIYDKVIELSAVKMQDGNVLER-FDEFIDP-GFPLSEQTTNLTSITTE 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   +   +F  F DF          HN  FD+GF+N   +R     +    I     
Sbjct: 484 MVQGSKTEEEVFQMFKDFCKG--CIIAGHNVSFDMGFMNTGYERHQMGKIAEPVIDTLPL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       LN+L K++ + + H   H A  DS     +  K +            +
Sbjct: 542 ARFLYPDMRGYRLNTLSKKFKVALEH--HHRANYDSEATGHLLYKFLKDAEARYDVKYVD 599

Query: 189 EDRFFKEEKKTVPNISLL 206
           +     EE     +    
Sbjct: 600 DLNKHMEENNAYRHARPF 617


>gi|325852036|ref|ZP_08171119.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
 gi|325484592|gb|EGC87508.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
          Length = 896

 Score = 69.2 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 3/120 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGIT 66
           IVFD ETTGLD   D IIEI A+ +           +++    P   K   +   ++ I 
Sbjct: 515 IVFDTETTGLDVFTDDIIEIAAMRIRGGEIVGEPLDLYIETGKPILPKLGDKENPMYAIY 574

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +      +   +             + HNA +D   ++  L+R   D +        
Sbjct: 575 HEKMAAGELLAPAEALCRFLAYIGTYPILGHNASYDYNILDNCLRRYCNDTMQAHGNRCF 634


>gi|170016990|ref|YP_001727909.1| DNA polymerase III, alpha subunit [Leuconostoc citreum KM20]
 gi|169803847|gb|ACA82465.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc
           citreum KM20]
          Length = 1437

 Score = 69.2 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 6/173 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL +  D+IIE+ AV++   +  ++ F  ++ P G   S    +L  ITD 
Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVKMQMGNVIDK-FSEYINP-GFPLSDFTTELTSITDA 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +  +  SI S F  +  +  A  + HN  FD+GF+NA   R N+  +    I     
Sbjct: 477 MVANADTEESIVSRFRAWVRD--AILVGHNVTFDIGFMNAAYSRYNQPDISNPIIDTLPF 534

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                       L ++ KR+   I+    H A+ DS     +  +++   +  
Sbjct: 535 TRWLYPDYKSYRLGTIAKRFN--INLEQAHRAIFDSETTGHIAWRLIKEANTT 585


>gi|182419729|ref|ZP_02950970.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237665534|ref|ZP_04525522.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376466|gb|EDT74047.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237658481|gb|EEP56033.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 1472

 Score = 69.2 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 83/206 (40%), Gaps = 7/206 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG   K ++I EIG +++ D    ++ F  F+ P  +   P  +++  ITD+
Sbjct: 446 YCVLDLETTGFSPKLEKITEIGIMKVKDGKVIDK-FSTFVNPE-KPIPPRVVEVTNITDD 503

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++  +   +F +  +F     +  +AHNA+FD+GF+    + +  D         +L+
Sbjct: 504 MVRNAETIDKVFPKMLEFIEG--SILVAHNAEFDIGFLRHYAKVLGHDFDFTYLDTLSLA 561

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   S            + I     H AL D      V+  M+    +      ++
Sbjct: 562 QDLFPQYKSYKL---GRIAKNLGIKVEVAHRALDDVDTTVKVFNVMIDMLKERGAKTLSD 618

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
            + +  +E+        L+    +  
Sbjct: 619 IETYACDEESKKVQYKKLRTHHAIIL 644


>gi|28378678|ref|NP_785570.1| DNA polymerase III PolC [Lactobacillus plantarum WCFS1]
 gi|254556876|ref|YP_003063293.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300768189|ref|ZP_07078094.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180817|ref|YP_003924945.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|32469698|sp|Q88VK2|DPO3_LACPL RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28271514|emb|CAD64419.1| DNA-directed DNA polymerase III, alpha chain PolC-type
           [Lactobacillus plantarum WCFS1]
 gi|254045803|gb|ACT62596.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300494253|gb|EFK29416.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046308|gb|ADN98851.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 1437

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD ETTGL +  DR+IE+ AV+++  +  ++ F+ F+ P G   S     L  ITD+
Sbjct: 422 YVIFDTETTGLSAIYDRVIELSAVKMVKGNVVDQ-FEEFIDP-GFHLSETTTNLTSITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   S   +F  F +F+ +  A  + HN  FD+GF+N    R +  P+    I     
Sbjct: 480 MVRGSKSEEEVFKLFREFYGD--AIVVGHNVTFDIGFMNTGYARHHMGPITNPIIDTLTL 537

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       LN+L K++ + + H   H A+ D+     +    +            +
Sbjct: 538 ARWLYPNLRGYRLNTLAKKFNVNLEH--HHRAIYDAETTGHLNHLFLKDAEDRYQVQFHD 595

Query: 189 EDRFFKEEKKTVPNISLL 206
           +      E     +    
Sbjct: 596 QLNDHMNENAAYRHARPF 613


>gi|271964195|ref|YP_003338391.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507370|gb|ACZ85648.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 574

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 69/174 (39%), Gaps = 5/174 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG+ +    I EIGAV++         F   + P G    P    L GITD 
Sbjct: 21  FVVFDLETTGVSAGEHAITEIGAVKVRGGEVLGE-FGTLVDP-GSPIPPFISVLTGITDT 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P   S+   F +    +    +AHNA FD+GFI A              ++DT+ 
Sbjct: 79  MVVAAPKIESVLPSFLE--FAEGTTLVAHNAGFDLGFIKAACAAHGYP-PPAHPVVDTVV 135

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +AR+           L     I      +H AL D+    DV   ++       
Sbjct: 136 LARKLLTRDEAPNCKLSTLARIFSKTEPRHRALADAQATVDVLHALLERAGSFG 189


>gi|299821667|ref|ZP_07053555.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601]
 gi|299817332|gb|EFI84568.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601]
          Length = 929

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 91/236 (38%), Gaps = 10/236 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +++ + R +V D+ETTG  + ++DRII+  A  +    +   T+  F+ P  R+  P   
Sbjct: 1   MKRKEKRYLVVDLETTGNQANRHDRIIQFAATLVEGSKRL-ETYSTFINPE-REIPPFIQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GI      D P F+ +     +   +    ++AHN  FD  F+  E+QR        
Sbjct: 59  QLTGIKPSDCYDAPIFTDVAPIIQNLLED--CIFVAHNVSFDWTFLAREMQRAGYPLPKT 116

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++                 L  L   + +       H A  D+ + +D+ + ++     
Sbjct: 117 KKLDTVELARIIYPGIDSYKLQDLSDEFKLGHDRP--HQADSDAEVTADLLLLLLDKLEN 174

Query: 181 INFGFKTNEDRFFKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           +            +  K  +P +   L+  K    +   +EL E+   +  + K  
Sbjct: 175 LPLPVIRKMATISQSLKNYLPELLFELEMQKDRELKALPDELMEYRGLV--IRKKP 228


>gi|288904428|ref|YP_003429649.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus
           UCN34]
 gi|306830461|ref|ZP_07463631.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977425|ref|YP_004287141.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288731153|emb|CBI12701.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus
           UCN34]
 gi|304427486|gb|EFM30588.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177353|emb|CBZ47397.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 1464

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 426 YVVFDVETTGLSAVNNELIQIAASKMYKGNIV-EQFDEFINP-GHHLSAFTTELTGITDN 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++      +   F DF  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 484 HVRNAKPIEEVLQMFQDFCQD--TVLVAHNATFDVGFMNANYERHGMPIITQPVIDTLEF 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 542 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEARE 591


>gi|227514853|ref|ZP_03944902.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum ATCC 14931]
 gi|227086785|gb|EEI22097.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum ATCC 14931]
          Length = 946

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 70/215 (32%), Gaps = 8/215 (3%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K   RII+IG V + D       F+  + P          +L GI +
Sbjct: 14  YAVVDLETTGTSVKTGSRIIQIGCVLVQDGQVI-NEFETKINP-RTVVPLTIEQLTGIKN 71

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +K  P F  +        ++        N  F       E        +     +   
Sbjct: 72  NDVKGAPLFEDVAPTLKSLLDDTIFVAHNVNFDFPFLNAEFERAGEAPLTIPAIDTVTLS 131

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGFK 186
            I     PS R    +      + I H   H A+ D+   + + I+++           +
Sbjct: 132 QILMPTAPSFRLRDLTSY----LAIDHDQPHSAVSDAVATAHLLIELLKRLADLPTITLQ 187

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           +  D      +KT          + +  +  KEEL
Sbjct: 188 SIVDLQLTLPQKTAWLFERELAKRAVEPQPLKEEL 222


>gi|294628658|ref|ZP_06707218.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
 gi|292831991|gb|EFF90340.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
          Length = 328

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 8/163 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L    +    +   + P      P  + +HG+T E
Sbjct: 23  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPER---DPGPVWIHGLTSE 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ I  EF     +     +AHNA FD   I  E  R  ++     R+     
Sbjct: 79  ALEGAPLFTDIAEEFAARLAD--RVLVAHNAVFDWQMIAREYARARREAPVRQRLCTIAL 136

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                 P   + L SL   +G+       H AL D+ +L++ +
Sbjct: 137 SKELGLPLPNHKLESLAAHFGVVQRRA--HHALDDARVLAEAF 177


>gi|229544028|ref|ZP_04433087.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans
           36D1]
 gi|229325167|gb|EEN90843.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans
           36D1]
          Length = 930

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 7/171 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D+ETTG  + K DRII+  AV +++  +    F  F+ P  +   P   +L GI 
Sbjct: 3   RYVVVDLETTGNSAKKGDRIIQFSAV-VVEGREIKTQFTSFVNPE-KPVPPFISELTGID 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  L++ P FS I     +   +  + ++AHN  FD+ F+  EL+     P     +   
Sbjct: 61  NGMLEEAPVFSEIAPRIMEILED--SIFVAHNVLFDLPFLQQELKAAGFPPFRGPSLDTV 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                     +   L  L      ++ H   H A  D+ + + + +  M  
Sbjct: 119 EFSRIAFPTLNSYKLGDLADSL--SLYHERPHRADSDAFVTAKLLLACMEK 167


>gi|194467743|ref|ZP_03073729.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
 gi|194452596|gb|EDX41494.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
          Length = 1443

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 78/198 (39%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL +  D++IE+ AV++ D +   R F  F+ P G   S +   L  IT E
Sbjct: 426 YVIFDVETTGLSAIYDKVIELSAVKMQDGNVLER-FDEFIDP-GFPLSEQTTNLTSITTE 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   +   +F  F DF          HN  FD+GF+N   +R     +    I     
Sbjct: 484 MVQGSKTEEEVFQMFKDFCKG--CIIAGHNVAFDMGFMNTGYERHQMGKIAEPVIDTLPL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       LN+L K++ + + H   H A  DS     +  K +            +
Sbjct: 542 ARFLYPDMRGYRLNTLSKKFKVALEH--HHRANYDSEATGHLLYKFLKDAEARYDVKYVD 599

Query: 189 EDRFFKEEKKTVPNISLL 206
           +     EE     +    
Sbjct: 600 DLNKHMEENNAYRHARPF 617


>gi|312869005|ref|ZP_07729182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus oris PB013-T2-3]
 gi|311095431|gb|EFQ53698.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus oris PB013-T2-3]
          Length = 1444

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 79/198 (39%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL +  D++IE+ AV++ +     R F  F+ P G   S +   L  ITDE
Sbjct: 423 YVIFDVETTGLSAIYDKVIELSAVKMKNGEVLAR-FDEFIDP-GFPLSEQTTNLTSITDE 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   +   +F  F DF          HN  FD+GF+N   +R   + +    I     
Sbjct: 481 MVRGSKTEEEVFKMFKDFCQG--TIIAGHNVSFDMGFMNTGYRRHQMEEITEPVIDTLPL 538

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       LN+L K++ + + H   H A  D+     +  K +    +       +
Sbjct: 539 ARFLYPNMRGYRLNTLSKKFKVALEH--HHRANYDAEATGHLLYKFLKDAEKRYEIRYVD 596

Query: 189 EDRFFKEEKKTVPNISLL 206
           +      E     +    
Sbjct: 597 DLNQHMAENDAYKHARPF 614


>gi|291280248|ref|YP_003497083.1| hypothetical protein DEFDS_1873 [Deferribacter desulfuricans SSM1]
 gi|290754950|dbj|BAI81327.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 200

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 8/184 (4%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           V D ETTGL   K  R++EI AV L +    + +R F   + P  +    +A K+H I+D
Sbjct: 14  VVDTETTGLSPYKGARLVEIAAVRLDEGLNIRLDRGFSTLINPK-KPIPFQAYKIHKISD 72

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +KD P+   +   F  +   +N  ++AHNA FD  FI+   ++   +    + I    
Sbjct: 73  EMVKDAPTIEEVLPHFSKYV--ENTVFVAHNAPFDFKFIDYFYKKTGMNCPLIAVIDTLK 130

Query: 128 SIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
              R         L+SL + + I   I+   +H A+ D+   + ++ K++   SQ     
Sbjct: 131 LSRRIIPGLKSYSLDSLIQHFNIKLKINGSYRHRAIYDALHTAIIFKKLIEIESQRKGSL 190

Query: 186 KTNE 189
             ++
Sbjct: 191 LLSD 194


>gi|327405996|ref|YP_004346834.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823]
 gi|327321504|gb|AEA45996.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM
           16823]
          Length = 458

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 83/240 (34%), Gaps = 16/240 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   + DIETTG  +K+ +I EI   +  D  K   +F   + P          +L GI 
Sbjct: 1   MNYAIVDIETTGGSTKSSKITEIAIYK-HDGMKIIDSFDTLVNPE-MPIPEFISRLTGIH 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ----RINKDPLDPSR 122
           D+ +++ P F  I  +  +    ++  ++AHN  FD G I  E +       K  L   R
Sbjct: 59  DDMVENAPKFYEIAKQIIE--FTEDCIFVAHNVGFDYGIIRHEFKLLGYDYRKAHLCTVR 116

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
               +      +   +       +  G   +            LL     K +    Q  
Sbjct: 117 ASRYVIPDHESYSLGKLTKALGIQLIGRHRAKGDAEATAHLFTLLHTTDSKGLQTFIQEE 176

Query: 183 FG---FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE-----LDEHDKTIQTLGKN 234
                   N D    EE    P I     D      I K +     +++H K ++TL  +
Sbjct: 177 INPKILHPNLDLETLEEIPNKPGIYKFYNDTNQLIYIGKSKHIKKRIEQHLKNVKTLKGS 236


>gi|269794889|ref|YP_003314344.1| exonuclease, DNA polymerase III subunit epsilon family
           [Sanguibacter keddieii DSM 10542]
 gi|269097074|gb|ACZ21510.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Sanguibacter keddieii DSM 10542]
          Length = 616

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 67/198 (33%), Gaps = 4/198 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG  SK+  I EIGAV++         FQ  + P G        +L GIT  
Sbjct: 62  FVVVDLETTGGSSKDAGITEIGAVKVRGGEVIGE-FQSLVNP-GHPVPAFIARLTGITTL 119

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   PS   +   F +    +    +AHNA FD+ F+ A  + ++        +     
Sbjct: 120 MVSSAPSIELVLPSFLE--FARGTVLVAHNAPFDISFLKAAARSMDLAWPGNQVLDTVPL 177

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             R        +            +    H AL D+    DV   +    + +      +
Sbjct: 178 ARRVVTRDEAPNHKLGTLAALFRATITPDHRALSDARATVDVMHALFDRMAPLGITHLED 237

Query: 189 EDRFFKEEKKTVPNISLL 206
                      V     L
Sbjct: 238 LATATDPVPADVRRRRHL 255


>gi|289772455|ref|ZP_06531833.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289702654|gb|EFD70083.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
          Length = 330

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 8/163 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L    +    +   + P      P  + +HG+T +
Sbjct: 25  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPQR---DPGPVWIHGLTSD 80

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P F  +  EF    +      +AHNA FD   I  E  R  ++     R+     
Sbjct: 81  VLRDAPLFPDVAEEFAARLDG--RVLVAHNAVFDWQMIAREYARAEREAPVRQRLCTIAL 138

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                 P   + L SL   +G+       H AL D+ +L++ +
Sbjct: 139 SKALDLPLPNHKLESLAAHFGVVQQRA--HHALDDARVLAEAF 179


>gi|227544953|ref|ZP_03975002.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300910016|ref|ZP_07127476.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112]
 gi|227185064|gb|EEI65135.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300892664|gb|EFK86024.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112]
          Length = 1443

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 78/198 (39%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL +  D++IE+ AV++ D +   R F  F+ P G   S +   L  IT E
Sbjct: 426 YVIFDVETTGLSAIYDKVIELSAVKMQDGNVLER-FDEFIDP-GFPLSEQTTNLTSITTE 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   +   +F  F DF          HN  FD+GF+N   +R     +    I     
Sbjct: 484 MVQGSKTEEEVFQMFKDFCKG--CIIAGHNVAFDMGFMNTGYERHQMGKIAEPVIDTLPL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       LN+L K++ + + H   H A  DS     +  K +            +
Sbjct: 542 ARFLYPDMRGYRLNTLSKKFKVALEH--HHRANYDSEATGHLLYKFLKDAEARYDVKYVD 599

Query: 189 EDRFFKEEKKTVPNISLL 206
           +     EE     +    
Sbjct: 600 DLNKHMEENNAYRHARPF 617


>gi|21220316|ref|NP_626095.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)]
 gi|256788562|ref|ZP_05526993.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|6117870|emb|CAB59443.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
           [Streptomyces coelicolor A3(2)]
          Length = 328

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 8/163 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L    +    +   + P      P  + +HG+T +
Sbjct: 23  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPQR---DPGPVWIHGLTSD 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P F  +  EF    +      +AHNA FD   I  E  R  ++     R+     
Sbjct: 79  VLRDAPLFPDVAEEFAARLDG--RVLVAHNAVFDWQMIAREYARAEREAPVRQRLCTIAL 136

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                 P   + L SL   +G+       H AL D+ +L++ +
Sbjct: 137 SKALDLPLPNHKLESLAAHFGVVQQRA--HHALDDARVLAEAF 177


>gi|33241759|ref|NP_876700.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
           TW-183]
 gi|33236268|gb|AAP98357.1| DNA-directed DNA polymerase III alpha chain [Chlamydophila
           pneumoniae TW-183]
          Length = 232

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 7/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG   + DRIIEI A      S T+ +F  ++ P       EA K+HGIT + 
Sbjct: 5   IFYDTETTGTQIERDRIIEIAAY----NSVTDESFLTYVNPE-IPIPDEASKIHGITTDA 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P F   +  F  F  E +     +N  FD   +  E +R + +PL    I      
Sbjct: 60  VLSAPKFPEAYEGFRKFCGEDSILVAHNNDGFDFPLLGKECRRHSLEPLTNRTIDSLKWA 119

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            + +    +++L  L + YG        H AL D  +L  V+  ++  
Sbjct: 120 QKYRPDLPKHNLQYLRQVYGFA--ENQAHRALDDVVILHKVFTSLIGD 165


>gi|297571338|ref|YP_003697112.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931685|gb|ADH92493.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 200

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 8/166 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+ETTGLD   DRIIEIG V L D  + +  F   + P     S  A  +H I+
Sbjct: 1   MTYAVVDVETTGLDLATDRIIEIGIVLLSDSLEQSGYFHSLIDPQR---SITAQHIHHIS 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-INAELQRINKDPLDPSRIID 125
              + D PSF+ +        +      +AHNA FD+GF      +      +D +  + 
Sbjct: 58  SAMVADAPSFALVAERVAKVLDG--QIIVAHNAPFDLGFLNAEFARAQAGISIDRANAVC 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           TL  +R   P   + L  L  R GI       H AL D+   ++++
Sbjct: 116 TLDQSRIYCPEGSHSLIGLAARLGIE--TPVAHRALADALTCTELF 159


>gi|296089746|emb|CBI39565.3| unnamed protein product [Vitis vinifera]
          Length = 332

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 61/206 (29%), Gaps = 9/206 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD ETTGL   NDRIIEIG  +L      N TFQ  + P  R      +         
Sbjct: 129 IVFDTETTGLSRANDRIIEIGLQDLGGGE--NSTFQTLVNPE-RIVPNPHVHGITTYMVN 185

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124
             D P +  +      +   +        W+AHN +                 + P+   
Sbjct: 186 RPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPNWRF 245

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                  R+   S                +           +LSDVY  +      + F 
Sbjct: 246 LDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVGPAHRVLSDVYT-LSQVLQMLTFN 304

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDK 210
            K +              I+  K+  
Sbjct: 305 LKVSVANLLDRSFTASDIINPKKKKN 330


>gi|225450649|ref|XP_002282861.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
 gi|225450651|ref|XP_002282855.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 337

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 61/206 (29%), Gaps = 9/206 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD ETTGL   NDRIIEIG  +L      N TFQ  + P  R      +         
Sbjct: 134 IVFDTETTGLSRANDRIIEIGLQDLGGGE--NSTFQTLVNPE-RIVPNPHVHGITTYMVN 190

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124
             D P +  +      +   +        W+AHN +                 + P+   
Sbjct: 191 RPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPNWRF 250

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                  R+   S                +           +LSDVY  +      + F 
Sbjct: 251 LDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVGPAHRVLSDVYT-LSQVLQMLTFN 309

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDK 210
            K +              I+  K+  
Sbjct: 310 LKVSVANLLDRSFTASDIINPKKKKN 335


>gi|259503120|ref|ZP_05746022.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041]
 gi|259168986|gb|EEW53481.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041]
          Length = 1444

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL +  D++IE+ AV++ +     R F  F+ P G   S +   L  ITDE
Sbjct: 423 YVIFDVETTGLSAIYDKVIELSAVKMKNGEVLAR-FDEFIDP-GFPLSEQTTNLTSITDE 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   S   +F  F DF          HN  FD+GF+N   +R   + +    I     
Sbjct: 481 MVRGSKSEEEVFKMFKDFCAG--TIIAGHNVSFDMGFMNTGYRRHQMEEITEPVIDTLPL 538

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       LN+L K++ + + H   H A  D+     +  K +    +       +
Sbjct: 539 ARFLYPNMRGYRLNTLSKKFKVALEH--HHRANFDAEATGHLLYKFLKDAEKRYEIRYVD 596

Query: 189 EDRFFKEEKKTVPNISLL 206
           E      E     +    
Sbjct: 597 ELNQHMAENDAYKHARPF 614


>gi|239832702|ref|ZP_04681031.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG
           3301]
 gi|239824969|gb|EEQ96537.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG
           3301]
          Length = 353

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 74/234 (31%), Gaps = 23/234 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    R    +  ++ GI
Sbjct: 95  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDICATFGALQQPSRPIPADITRITGI 154

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE ++ +           D    +    IAHNA FD  F+    +R +    +      
Sbjct: 155 TDEMVRGQTIPREKL----DALIAEADIIIAHNAGFDRPFL----ERFSIAFANKPWACS 206

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178
              I           L  L  + G   +             +          + +++   
Sbjct: 207 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKEQSGDTTPFAELLKAS 266

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
            +           F  ++               R K  +T I +EELD   + +
Sbjct: 267 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEIGEEELDAELEYL 320


>gi|148269564|ref|YP_001244024.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1]
 gi|147735108|gb|ABQ46448.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1]
          Length = 186

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 9/172 (5%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           V D ETTG D    DRI+EI AV +       N+ F   + P  R       K+HGI++ 
Sbjct: 10  VVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNPRIR-IPALVQKVHGISNM 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P   ++++ F D+        + HNA FD+ F++   +     P+    I     
Sbjct: 69  DIEEAPDMDAVYNLFRDYVKG--TVLVFHNANFDLTFLDMMAKETGNFPITNPYIDTLDL 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                     + L  LC+R GI  + R  H AL D+ + + V++K++    +
Sbjct: 127 SEEIF--GRPHSLKWLCERLGIKTTIR--HRALPDALVTARVFVKLVEFLGE 174


>gi|51892851|ref|YP_075542.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51856540|dbj|BAD40698.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 958

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 4/116 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG   ++DR+IE+ AV   D  +    F   + P G         L GI   
Sbjct: 6   FVAIDVETTGTSPEHDRLIEVAAVRFEDGREIG-CFSRLIDP-GCPVPQRIQHLTGIHPA 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            L  KP    +  +   F  +     +AHNA FDV F+ A   R  +   + S   
Sbjct: 64  MLAGKPRIEEVVPDLASFLGD--LPLVAHNAPFDVAFLQAAFARAGRSLPNWSYDT 117


>gi|305667754|ref|YP_003864041.1| putative DNA polymerase III subunit epsilon [Maribacter sp.
           HTCC2170]
 gi|88707591|gb|EAQ99833.1| putative DNA polymerase III epsilon chain [Maribacter sp. HTCC2170]
          Length = 258

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 87/231 (37%), Gaps = 21/231 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG +  +DRI+EI  +++  + +K ++T+   + P  +    E + +HGI++E 
Sbjct: 11  FFDLETTGTNVAHDRIVEISILKVFPNGNKESKTW--LVNPE-KDIPAEVIAIHGISNEK 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P+F  +  E +    + +      N           L+      +     +D  +I
Sbjct: 68  VANEPTFKELSKEVYLMIKDCDLGGFNSNRFDIPLLAEEMLRADVDFDMKNMVSVDVQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +              ++         H A  D++   +V +  +    ++        
Sbjct: 128 FHK----MEKRTLEAAYKFYCDKDLTDAHSAEADTNATYEVLLSQLDRYPEL-------- 175

Query: 190 DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE---H--DKTIQTLGKNA 235
           +   K+  +   +  L+     +     +EE+     H   K +  L K  
Sbjct: 176 ENNVKKLAEFSTHKKLVDFAGFIAMDDNEEEVFAFGKHNGKKVLDVLDKEP 226


>gi|256825435|ref|YP_003149395.1| hypothetical protein Ksed_16150 [Kytococcus sedentarius DSM 20547]
 gi|256688828|gb|ACV06630.1| exonuclease, DNA polymerase III, epsilon subunit family [Kytococcus
           sedentarius DSM 20547]
          Length = 584

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 68/203 (33%), Gaps = 4/203 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  S +  I E GAV++         FQ  + P      P    L GIT  
Sbjct: 27  FVVFDLETTGTSSADSEITEFGAVKVRGGEVVGE-FQTLVRP-AAGIPPYIQVLTGITTA 84

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   PS   +   F +F  +  A  +AHNA+FD  F+    +R  +       +     
Sbjct: 85  MVSAAPSIEQVLPNFLEFVGD--AVLVAHNARFDTAFVRRACERTGRPAPGNPVLDTVHL 142

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +        +                 H AL D+    DV   ++     +       
Sbjct: 143 ARQLLPRPEVPNHKLSTLAAYFRAETTPSHRALDDARATVDVLHGLIERVGPLGVHSLEE 202

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
              + +   +       L  D P
Sbjct: 203 LLAYSRHVPEARRRKRTLAADLP 225


>gi|124002035|ref|ZP_01686889.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134]
 gi|123992501|gb|EAY31846.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134]
          Length = 463

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 23/213 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTGL   +D+I EI   +  D      +F   + P     S    ++ GIT++ +
Sbjct: 4   IIDVETTGLRPTDDKITEIAIYK-HDGESVVDSFHSLVNPEC-YISDRITQITGITNDMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + P F  I  +       +   ++AHNA FD GF+  E + +        + + T+ ++
Sbjct: 62  ANAPKFYEIAKDILA--ITEGTVFVAHNAHFDYGFVREEFKALGYK--FTRKTLCTVRVS 117

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R+  P   +   +        I   + H A  D+    +V+ K++               
Sbjct: 118 RKVFPGLPSYSLAK-LCKHFKIQLTNHHRASADALATVEVFEKLLEK------------- 163

Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
                 K T   +    + K L  +I  +E   
Sbjct: 164 ---NSSKLTKNVVETEIKAKNLPPKINLDEYQA 193


>gi|320535302|ref|ZP_08035422.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Treponema phagedenis F0421]
 gi|320147834|gb|EFW39330.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Treponema phagedenis F0421]
          Length = 216

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 11/203 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTGL  + D ++EIG ++        R F + + P G+    +   ++ ITD  L
Sbjct: 17  AFDTETTGLKQEEDSVVEIGGIKFDHRGVIAR-FNILINP-GKPMPEDVTAVNNITDAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP F+++  +F  F  +     +AHNA FD+GFIN EL+R  K PL    I   +   
Sbjct: 75  ADKPPFNAVIPDFLRFIKK--TVLVAHNAPFDIGFINNELKRCKKPPLTNKVIDTLVLAQ 132

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
                  ++            I+    H A  DS +  + +   +         F  N +
Sbjct: 133 EVFPGLGKHQYRLQNLALQFGITALEAHRAEDDSRVCMEFFTIAVEH-------FFKNNE 185

Query: 191 RFFKEEKKTVPNISLLKRDKPLF 213
           +  K+ K       +L+   P  
Sbjct: 186 KLVKQIKANTNIEEILREAPPPV 208


>gi|318057718|ref|ZP_07976441.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318079748|ref|ZP_07987080.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
 gi|333028027|ref|ZP_08456091.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
 gi|332747879|gb|EGJ78320.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
          Length = 331

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 8/170 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+      +    +    +   + P      P  + +HG+T E
Sbjct: 19  YAVVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTLVNPER---DPGPVWIHGLTSE 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  E     +      +AHNA FD   +  E  R         R+     
Sbjct: 75  VLEGAPLFPEIAEELSRRLDG--RVLVAHNAVFDWSMLAREYARAGITAPVRRRLCTIAL 132

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 P   + L +L   +G+       H AL D+ +L++ +   +   
Sbjct: 133 AKELALPLPNHKLETLAAHFGVEQRRA--HHALDDARVLAEAFRPSLRAA 180


>gi|302518301|ref|ZP_07270643.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
 gi|302427196|gb|EFK99011.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
          Length = 329

 Score = 69.2 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 8/170 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+      +    +    +   + P      P  + +HG+T E
Sbjct: 21  YAVVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTLVNPER---DPGPVWIHGLTSE 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  E     +      +AHNA FD   +  E  R         R+     
Sbjct: 77  VLEGAPLFPEIAEELSRRLDG--RVLVAHNAVFDWSMLAREYARAGITAPVRRRLCTIAL 134

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 P   + L +L   +G+       H AL D+ +L++ +   +   
Sbjct: 135 AKELALPLPNHKLETLAAHFGVEQRRA--HHALDDARVLAEAFRPSLRAA 182


>gi|302392350|ref|YP_003828170.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium
           arabaticum DSM 5501]
 gi|302204427|gb|ADL13105.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium
           arabaticum DSM 5501]
          Length = 1440

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTG +  ++ IIEIGA ++ D    +R F   + P   +     ++L GI + 
Sbjct: 428 YIVFDLETTGFNPYHNEIIEIGAAKVKDGRIIDR-FGTLVDPET-EIPERIVELTGIDNS 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
            +  KP      +EF DF  E        +   + 
Sbjct: 486 MVAGKPKKEEALNEFLDFVGEATIVAHNLSFDRNF 520


>gi|295695291|ref|YP_003588529.1| DNA polymerase III, epsilon subunit [Bacillus tusciae DSM 2912]
 gi|295410893|gb|ADG05385.1| DNA polymerase III, epsilon subunit [Bacillus tusciae DSM 2912]
          Length = 250

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 6/177 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPN-GRKNSPEALKLHGIT 66
            +VFD ETTG D + D +IEIGAV + +     ++TF   +    GR+      ++ G++
Sbjct: 58  YVVFDTETTGFDWRTDALIEIGAVRVENGQVREDQTFSSLIALEPGRRVPEVVRRITGLS 117

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ L   P    + S F       +A  +AH+A  DV F+N  L +     L P R++DT
Sbjct: 118 EQELWRAPKVQDVLSRFMA--FSSDAVLVAHHAGHDVNFLNVPLNQFYGIEL-PRRVVDT 174

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             +ARR  P +            + I   ++H AL D+ L + ++   +   ++   
Sbjct: 175 AQVARRLWPDTGEATLDY-LIERMAIPPLTRHRALNDALLTARIWSVFLTLFTRKGL 230


>gi|241895743|ref|ZP_04783039.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
 gi|241870786|gb|EER74537.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
          Length = 1437

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV+++  +     F  F+ P G   S   + L  ITD+
Sbjct: 421 YVVFDVETTGLSAAYDKVIELSAVKMVKGNVIAE-FSEFIDP-GFSLSQTTVDLTSITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   S   +F+ F +F+ +  A  + HN  FD+GF+N   +R     +    I     
Sbjct: 479 MVRGSKSEKEVFTAFREFYGD--AILVGHNVTFDMGFMNEGYERHGMGSITNPVIDTLTL 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                       LN+L K +G+       H A+ DS     +    +    +
Sbjct: 537 ARFLYPNMRSYRLNTLAKHFGVL--LEQHHRAIFDSETTGHLNRIFLEEARE 586


>gi|125624340|ref|YP_001032823.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124493148|emb|CAL98112.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071124|gb|ADJ60524.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 277

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 4/167 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFD ETTG  ++ + II+IGAV+  + ++    F   +       S E  +L GI  
Sbjct: 4   KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQELARFNQLVKNQRSYVSTEITQLTGIKP 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L ++P+   I  +F DF        +AHNA FD+ F+   +       ++  R+ DTL
Sbjct: 64  ADLLNQPTIEEILPDFLDFIKG--HLVVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++    S   L +        ++    H AL D  + + +Y  +
Sbjct: 122 AESKKLLTMSSYALENFKDLL--EMNDLRSHDALNDCLITAKLYQYL 166


>gi|255316545|ref|ZP_05358128.1| DNA polymerase III PolC [Clostridium difficile QCD-76w55]
          Length = 285

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 7/167 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V DIETT     K  RI+EIGAV++ +    +  F   + P  +    +  +L  IT+
Sbjct: 17  FVVVDIETTAFSIQKGGRILEIGAVKIKNGEIVDN-FSTLVNPELK-IPKKITELTKITN 74

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +KD P   ++  +F +F ++  +  +AHNA FD                    +    
Sbjct: 75  DMVKDAPYIGNVLQKFNEFISD--SVIVAHNASFDWDRFLKPALATIGIKSSHKVMDTVS 132

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                     ++ L  LC      +     H A+ D+   +  ++K+
Sbjct: 133 LSKFTFPDKKKHTLIDLCSYL--EVPLEKNHRAIDDAIATAKCFLKL 177


>gi|120599313|ref|YP_963887.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1]
 gi|120559406|gb|ABM25333.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1]
          Length = 298

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 3/167 (1%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D ETTGL+++ D+IIEI A++    S  +  F+  + P   K   +   + GIT+
Sbjct: 18  KFIALDAETTGLEAETDKIIEIAAIKFDLLSNDHPVFESLINP-AVKVPRKITNITGITN 76

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L D+P F+ +  +   F  +     +A+NAKFD GF++AE   +     +       L
Sbjct: 77  KMLVDQPPFAELAQDLKAFIGD--LPIVAYNAKFDKGFLDAEFANVGIVLNNQYHCALNL 134

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + A    P+ +    +      +  +HR+K  A+    +     + +
Sbjct: 135 AKAAFSLPNYKLATVAKHCNIPLDEAHRAKADAIAAGRVFMCAAVTL 181


>gi|124005083|ref|ZP_01689925.1| exonuclease [Microscilla marina ATCC 23134]
 gi|123989335|gb|EAY28896.1| exonuclease [Microscilla marina ATCC 23134]
          Length = 245

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 76/205 (37%), Gaps = 8/205 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG D+ NDRI++I  ++L  D +K  +  +  + P      PE  K+HG++DE
Sbjct: 8   VFFDLETTGTDTLNDRIVQIAIIKLAADGTKVEK--ERLINP-TIPIPPEVTKVHGVSDE 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P+F  +    ++F    +     H        I    +     P    + ID + 
Sbjct: 65  MVKDAPTFHQVAKSLFEFIRGCDLAGYNHLNFDMPLLIEEFARAGVVFPEPDVQYIDVMK 124

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +    HP       S   +        + H A+ D+    +++   +             
Sbjct: 125 VYYHFHP----RTLSAAYQLYCHKELENAHNAMADTQATLEIFESQLATHFDEEPSINEI 180

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
            +  F              ++  + 
Sbjct: 181 HNLCFSSRHVDFSRRLARDKEGEII 205


>gi|332637692|ref|ZP_08416555.1| DNA polymerase III PolC [Weissella cibaria KACC 11862]
          Length = 1440

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 63/172 (36%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV+++  +     F  F+ P           +   +  
Sbjct: 424 FVVFDVETTGLSAVYDKVIELSAVKMVKGNVIAE-FSEFIDPG---FPLSQTTVDLTSIT 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S               +A  + HN  FD+GF+     R    P+    I   + 
Sbjct: 480 DDMVRGSKPEKQVFEEFREFYGDAVLVGHNVTFDMGFMQEGYARHQLAPITNPVIDTLIL 539

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                       LN+L K +GI       H A+ DS     +    +    +
Sbjct: 540 ARFLYPNMRSYRLNTLAKHFGIV--LEQHHRAIFDSETTGHLNRVFLEQARE 589


>gi|116511811|ref|YP_809027.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116107465|gb|ABJ72605.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 277

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 4/167 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFD ETTG  ++ + II+IGAV+  + ++    F   +       S E  +L GI  
Sbjct: 4   KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQELARFNQLVKNQRSYVSTEITQLTGIKP 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L ++P+   I  +F DF        +AHNA FD+ F+   +       ++  R+ DTL
Sbjct: 64  ADLLNQPTIEEILPDFLDFIKG--HLLVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++    S   L +        ++    H AL D  + + +Y  +
Sbjct: 122 AESKKLLTMSSYALENFKDLL--EMNDLRSHDALNDCLITAKLYQYL 166


>gi|328957406|ref|YP_004374792.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
 gi|328673730|gb|AEB29776.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
          Length = 1446

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 72/198 (36%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + IIE+ AV++   +    +F+ F+ P    +      ++     
Sbjct: 426 YVVFDVETTGLSAVYNSIIELSAVKMHKGNII-ESFEQFIDPG---HPLSQTTINLTGIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 S S             +   +AHNA FD+GF+N    + N        I     
Sbjct: 482 DEMVHGSKSEEEVLTLFKEFAGDHILVAHNASFDMGFLNTSNAKHNIPDATNPVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L K+YG  I+    H A+ DS     +    +    + +  F  +
Sbjct: 542 SRFLHPQYKSHRLNTLAKKYG--INLEQHHRAIFDSETTGQLCWLFLKEAKEEHEMFYHD 599

Query: 189 EDRFFKEEKKTVPNISLL 206
           +      E          
Sbjct: 600 QLNEHIGEGDAYKRARPF 617


>gi|317503311|ref|ZP_07961361.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
 gi|315665570|gb|EFV05187.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
          Length = 286

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 77/216 (35%), Gaps = 11/216 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGLD  NDRII++  +++    K  R     + P GR       +L GI DE 
Sbjct: 10  VVFDLETTGLDIVNDRIIQLSFIKVYPDGKEERGDH-LINP-GRHIPEMITELTGIDDEK 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD PSF  I +   + F   +      N           L+          R+ID  +I
Sbjct: 68  VKDAPSFKQISTTLAETFKGCDFAGFNSNRFDVPMLAEEFLRAGIDFDFSKCRLIDAQAI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          +   ++           A          Y  +M      +   +  +
Sbjct: 128 FHK----MERRNLAAAYKFYCGRKMEEDFEAHRADQDTEATYRVLMGELDMYSKEQQDED 183

Query: 190 DRFFKEEKKTVPNISLLKRD-----KPLFTRITKEE 220
           +R    +   +   S    +     + ++  IT +E
Sbjct: 184 ERILPNDMDFLAEFSKQNDNVDFAGRMIWAPITDKE 219


>gi|312887472|ref|ZP_07747071.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM
           18603]
 gi|311300112|gb|EFQ77182.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM
           18603]
          Length = 456

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 7/172 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG  +    I EI  +    ++ TNR F+  + P G         L GI ++
Sbjct: 2   YAIVDIETTGGHASAHGITEIAIIIHDGHTITNR-FETLINP-GMLIPMHIQVLTGIDND 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+ P FSSI    ++            N  +            +   L   ++     
Sbjct: 60  MVKNAPPFSSIAQHVYEILEPCTFVAHNVNFDY---SFVKHHLMASGYDLQSPKLCTVRL 116

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +         L   C   GI   + ++H A+ D+   + ++  M++   +
Sbjct: 117 GRKIFPGLPSYSLGKFCGHMGID--NSARHRAMGDADATAKLFSMMLLNDKE 166


>gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
 gi|295827583|gb|EDY45420.2| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
          Length = 331

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 8/170 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+      +    +    +   + P      P  + +HG+T E
Sbjct: 19  YAVVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTLVNPER---DPGPVWIHGLTSE 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  E     +      +AHNA FD   +  E  R         R+     
Sbjct: 75  VLEGAPLFPEIAGELSRRLDG--RVLVAHNAVFDWSMLAREYARAGITAPVRRRLCTIAL 132

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 P   + L +L   +G+       H AL D+ +L++ +   +   
Sbjct: 133 AKELALPLPNHKLETLAAHFGVEQRRA--HHALDDARVLAEAFRPSLRAA 180


>gi|237653313|ref|YP_002889627.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237624560|gb|ACR01250.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 769

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 8/167 (4%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGL+  + D II++GA  +L+       +F+  + P  R  +PE+ K+HGIT E
Sbjct: 581 VFDTETTGLNPSQGDEIIQVGATRILNGKLLRAESFEQLVDPE-RPLAPESAKIHGITSE 639

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+ +P+   +   F       +   IAHNA FD+ F+  + ++       P      LS
Sbjct: 640 MLRGQPTIDKVLPAFHA--FAADTVLIAHNAAFDMRFLQLKEEQTGLRFDHPVIDTLLLS 697

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                +    + L ++ +R G+TI  R  H AL D+ + ++V++K++
Sbjct: 698 AVVHPN-QESHRLEAIAERLGLTIVGR--HTALGDAIVTAEVFLKLI 741


>gi|94501331|ref|ZP_01307852.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65]
 gi|94426602|gb|EAT11589.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65]
          Length = 738

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG   +  R+ E+G V++L+    +  +Q  + P  R       +L GI++E
Sbjct: 573 YVIVDVETTGGRKEQHRVTEVGMVKVLNGEIVDE-WQSLINP-MRHIPQSITRLTGISNE 630

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P F  +  E  +F     + ++AHN  FD GF  +E +R+ +    P      +S
Sbjct: 631 MVSNAPVFDDVADEIAEFCAG--SVFVAHNVNFDYGFFRSEFERLGRRFHAPKLCTVQMS 688

Query: 129 IAR 131
              
Sbjct: 689 RKY 691


>gi|327312374|ref|YP_004327811.1| UvrD/REP helicase [Prevotella denticola F0289]
 gi|326945342|gb|AEA21227.1| UvrD/REP helicase [Prevotella denticola F0289]
          Length = 896

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 3/120 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGIT 66
           IVFD ETTGLD   D IIEI A+ +           +++    P   K   +   ++ I 
Sbjct: 515 IVFDTETTGLDVFTDDIIEIAAMRIRGGEIVGEPLDLYIETGKPILPKLGDKENPMYAIY 574

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +      +                 + HNA +D   +N  L+R   D +        
Sbjct: 575 HEKMAAGELLAPAEGLCRFLTYIGTRPILGHNASYDYNILNNCLRRYCNDTMQAHGNRCF 634


>gi|167753685|ref|ZP_02425812.1| hypothetical protein ALIPUT_01966 [Alistipes putredinis DSM 17216]
 gi|167658310|gb|EDS02440.1| hypothetical protein ALIPUT_01966 [Alistipes putredinis DSM 17216]
          Length = 257

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 72/200 (36%), Gaps = 9/200 (4%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           +  N  R I+F D+ETTG+D   DRI+EI  V+++ D  +  RT    + P G     EA
Sbjct: 1   MELNLKRPIIFFDLETTGIDIARDRIVEISMVKVMPDGEEIVRT--RRINP-GMPIPAEA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGITDE +KD P F  I      F    +      N       +   ++        
Sbjct: 58  TAIHGITDEDVKDCPLFPQIAKSLAQFIEGCDFGGFNSNRFDLPMLVEEFMRAGVDVDFR 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             + ID  +I  +              ++         H A  D+    +V    +    
Sbjct: 118 KRKFIDVQNIFHK----MEQRTLVAAYKFYCGKDLADAHSAEADTLATYEVLKAQLDRYG 173

Query: 180 QINFGFKTNEDRFFKEEKKT 199
           ++        +   + E   
Sbjct: 174 ELQNDVAALAEFSTRAESAD 193


>gi|284032480|ref|YP_003382411.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
           17836]
 gi|283811773|gb|ADB33612.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
           17836]
          Length = 415

 Score = 68.8 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 9/184 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTGL      R+IEI  V L  + +    +   L P           +HGI  
Sbjct: 2   YAVIDTETTGLLPGHRHRVIEIAVVLLDQHGRFEHEWVTLLNPQRDLGP---QHIHGILT 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIIDT 126
             +   P F  +          +      HN +FD+GF+     +  +  PL   R + T
Sbjct: 59  ADVLAAPEFVDVARHLGALLAGRMVV--GHNVEFDLGFLRAEFARLGHVVPLITERSMCT 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +++A   +P S+  L + C   GI+   +  H AL D+   ++++   +           
Sbjct: 117 MALAGYLYPGSKRTLGACCAAAGIS--LQGWHSALADTRATAELFATYLRSFPSPPPWQW 174

Query: 187 TNED 190
             E+
Sbjct: 175 AYEE 178


>gi|331091091|ref|ZP_08339933.1| hypothetical protein HMPREF9477_00576 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405313|gb|EGG84849.1| hypothetical protein HMPREF9477_00576 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 236

 Score = 68.8 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 74/217 (34%), Gaps = 11/217 (5%)

Query: 7   MR--KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           MR   I FD+ETTGL  + D IIEIGAV++ +    +R F  FL P     S      + 
Sbjct: 1   MRKTYISFDLETTGLSEEKDYIIEIGAVKVNNGKVVDR-FARFLKPP---ISISNTITNL 56

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                   K +  +  +             + HN  FD  F+     R            
Sbjct: 57  TGITDDMVKNAGDTQETIKDFIKFCDGYFLLGHNIMFDYKFMKTYAARFGLHFEKEGIDT 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
             ++    K+  S++  +         I + S H A  D+   + +Y  +          
Sbjct: 117 LKIARKVHKNLESKSLES---LCTYYNIVNASAHRAYHDALATAKLYHMLAHDFEVSEPS 173

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKE 219
             T E   +K +K        L     L     +++E
Sbjct: 174 LFTPETLCYKPKKVQKITKKQLIYLTSLLEYHSLSEE 210


>gi|229138336|ref|ZP_04266930.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST26]
 gi|228645101|gb|EEL01339.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST26]
          Length = 99

 Score = 68.8 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 8   RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            +  +K  P F  +     +      A ++AHN  FD  F
Sbjct: 62  DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNF 99


>gi|170288240|ref|YP_001738478.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2]
 gi|170175743|gb|ACB08795.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2]
          Length = 186

 Score = 68.8 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 9/172 (5%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           V D ETTG D    DRI+EI AV +       N+ F   + P  R       K+HGI++ 
Sbjct: 10  VVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNPRIR-IPALIQKVHGISNM 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P   ++++ F D+        + HNA FD+ F++   +     P+    I     
Sbjct: 69  DIEEAPDMDAVYNLFRDYVKG--TVLVFHNANFDLTFLDMMAKETGNFPITNPYIDTLDL 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                     + L  LC+R GI  + R  H AL D+ + + V++K++    +
Sbjct: 127 SEEIF--GRPHSLKWLCERLGIKTTIR--HRALPDALVTARVFVKLVEFLGE 174


>gi|183983226|ref|YP_001851517.1| hypothetical protein MMAR_3235 [Mycobacterium marinum M]
 gi|183176552|gb|ACC41662.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 674

 Score = 68.8 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 10/175 (5%)

Query: 9   KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +V D+ETTG  +        D I EIGAV++         F   + P  R   P+ ++L
Sbjct: 57  FVVVDLETTGGRATGTEASPPDAITEIGAVKVRGGVILGE-FATLVDPQ-RSIPPQIVRL 114

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT   L D P+  S+   F++F    N+  +AHNA FD+GF+ A   R +        
Sbjct: 115 TGITTAMLCDAPTIDSVLPMFFEFV--GNSVLVAHNAGFDIGFLRAAAGRCDIAWPGSKV 172

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +       R         +         +++ +  H AL D+    +V   ++  
Sbjct: 173 LCTVRLARRVLSREEAPSVRLAALARLFSVATQPTHRALDDARATVEVLHALIER 227


>gi|152967191|ref|YP_001362975.1| hypothetical protein Krad_3247 [Kineococcus radiotolerans SRS30216]
 gi|151361708|gb|ABS04711.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans
           SRS30216]
          Length = 601

 Score = 68.8 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 67/197 (34%), Gaps = 3/197 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG    +  I EIGAV++         FQ  + P+          L GIT+ 
Sbjct: 28  FVVVDLETTGGAPADAGITEIGAVKVRGGQVLGE-FQTLVRPSS-PIPAFVQVLTGITNG 85

Query: 69  FLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +   PS + +   F +F   E+    +AHNA +D  F+ A  Q   +    P  +   +
Sbjct: 86  MVATAPSLAQVLPAFLEFAGFERGTVLVAHNAPYDTSFLKAACQVTGRPWPKPRVVDTVV 145

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
              +        D            +    H AL D+    DV   ++            
Sbjct: 146 LARQLVDRDEAPDRKLGTLARLFGTATTPDHRALHDARATVDVLHALLGRVGNRGVHSLE 205

Query: 188 NEDRFFKEEKKTVPNIS 204
           +   F       V    
Sbjct: 206 DLSAFAATAVNPVRRAK 222


>gi|219850553|ref|YP_002464986.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM
           9485]
 gi|219544812|gb|ACL26550.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM
           9485]
          Length = 233

 Score = 68.8 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 5/73 (6%)

Query: 8   RKI---VFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLC-PNGRKNSPEALKL 62
           R++   V D+ETTGLD ++D +I IGAV + +      +T+   +  P GR+ S E++++
Sbjct: 34  REVPYTVIDVETTGLDPRHDALIAIGAVNVENGRVLLKQTWHSLIRPPPGREPSVESIRV 93

Query: 63  HGITDEFLKDKPS 75
           H +T E L+D P 
Sbjct: 94  HHLTPEELRDAPP 106


>gi|269956792|ref|YP_003326581.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305473|gb|ACZ31023.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 584

 Score = 68.8 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 4/174 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG  + +  I EIGAV++         FQ  + P GR+      +L GIT  
Sbjct: 33  FVVVDLETTGTRTTDSGITEIGAVKVRGGEVLGE-FQSLVNP-GREVPAFVARLTGITTA 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   PS   +   F +     +   +AHNA FDVGF+ A    +         +     
Sbjct: 91  MVSTAPSIDLVLPSFLE--WAHDCVLVAHNAPFDVGFLKAAAAGLGYPWPGFPVVDTVPL 148

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
             R        +       +        +H AL D+    DV   ++     + 
Sbjct: 149 ARRVVPKDEAPNHKLATLAHLFRARVTPEHRALADARATVDVLHGLLDRLGAMG 202


>gi|159899742|ref|YP_001545989.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus
          ATCC 23779]
 gi|159892781|gb|ABX05861.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus
          ATCC 23779]
          Length = 927

 Score = 68.8 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I  D+ETTGL+   D IIE+GAV+    ++   T+Q  + P  +    +  +L GI   
Sbjct: 5  YIALDLETTGLEPGRDEIIEVGAVKFR-GNEVLETYQTLVKPK-QVLPIKIARLTGIDAH 62

Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE 93
           L   P+F+SI  +   F       
Sbjct: 63 ELTTAPTFNSIGGQLAKFLKSYPII 87


>gi|254720591|ref|ZP_05182402.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|265985632|ref|ZP_06098367.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13]
 gi|306838555|ref|ZP_07471392.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653]
 gi|264664224|gb|EEZ34485.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13]
 gi|306406341|gb|EFM62583.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653]
          Length = 332

 Score = 68.4 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 64/227 (28%), Gaps = 9/227 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +K +           D  +   A     +  F   F  A   +     +       
Sbjct: 134 TDEMVKGRTIPRDELDALIDGADIIIAHNAGFDRPFLERFSIAFANKPWACSVKEIDWTA 193

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                 +                               S   +  + +++    +     
Sbjct: 194 RGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTP-FAELLKASQRARMRI 252

Query: 186 KTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
                 F  ++               R K  +T + ++EL+   + +
Sbjct: 253 YAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 299


>gi|171059184|ref|YP_001791533.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170776629|gb|ACB34768.1| Exonuclease RNase T and DNA polymerase III [Leptothrix cholodnii
           SP-6]
          Length = 218

 Score = 68.4 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 57/175 (32%), Gaps = 4/175 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGLD   D II IGAV ++ +   T+   ++ + P  RK S +++++H + +
Sbjct: 41  WVALDCETTGLDVGRDEIIAIGAVRIVGNRIMTSERLELLVRPEKRKLSADSVRVHRLRE 100

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA---KFDVGFINAELQRINKDPLDPSRII 124
           + +           +   F   +              +          + +  ++ S + 
Sbjct: 101 QDVAQGLKPEEAVMQLMHFIGSRPLVGYYLEFDLAMINRVAWPMLGMGLPQPRIEVSSLY 160

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                 +      ++    L     +      +  A    +      +  +    
Sbjct: 161 HDYKHRQLLPYQQQSVNIDLRFDTLMKDLDLPQRDAHDALNDAVMAALAYLKLRR 215


>gi|160915589|ref|ZP_02077800.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991]
 gi|158432709|gb|EDP10998.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991]
          Length = 1447

 Score = 68.4 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 6/228 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL S+ D IIE G   + D +   ++ Q+F+ P         ++L GI++E
Sbjct: 399 YCVFDLETTGLSSRFDHIIEFGGQIVKDRTCI-KSLQLFIKPP-VPIPAHIVELTGISEE 456

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++  SF+    +  DF  +  +  +AHNA FD  F+N+EL RI + PL  + +IDTL 
Sbjct: 457 HVRNAKSFAECADQILDFIGD--SILVAHNADFDYNFLNSELVRIGRKPL-DNPVIDTLD 513

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187
           +AR         L  + + YGI       H A  D+ +L++ Y+ M+     I N     
Sbjct: 514 LARSMQDRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLANTYMNMLNDLKHIQNLAALQ 573

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           +        K    ++++L ++      + +     H K +    K+ 
Sbjct: 574 DMQNARSFTKVRAKHVTILVKNAAGLKELFELVTLSHTKYLSYSDKST 621


>gi|254517741|ref|ZP_05129797.1| DNA polymerase III epsilon subunit family exonuclease
          [Clostridium sp. 7_2_43FAA]
 gi|226911490|gb|EEH96691.1| DNA polymerase III epsilon subunit family exonuclease
          [Clostridium sp. 7_2_43FAA]
          Length = 188

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
          I+  K R I FD+ETTGL   ND+IIE+GAV   +     + +   + 
Sbjct: 21 IKNLKNRYIAFDVETTGLSPINDKIIEVGAVLFENGEIIKK-YSYLVN 67


>gi|149911269|ref|ZP_01899891.1| exonuclease [Moritella sp. PE36]
 gi|149805654|gb|EDM65654.1| exonuclease [Moritella sp. PE36]
          Length = 138

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
          I+ D ETTGL     DR IEIGAV++ D   T R FQ  + P  R +S  A       D 
Sbjct: 9  IILDFETTGLSPDMGDRAIEIGAVKIEDGEITGR-FQELMYPGRRVSSFIADYTSITNDM 67

Query: 69 FLKDKPSFSSIFSE 82
           +   P    +   
Sbjct: 68 LVDAAPCEEVMHRF 81


>gi|302346280|ref|YP_003814578.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
 gi|302150309|gb|ADK96570.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
          Length = 896

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 3/120 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGIT 66
           +VFD ETTGL+   D IIEI A+ +           +++    P       +   ++ I 
Sbjct: 515 VVFDTETTGLNVFQDDIIEIAAIRIKGGEVVGEPLDLYIETDKPILPMLGDKENPMYAIY 574

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +      S   +          +  + HNA +D   ++  LQR   D +    I   
Sbjct: 575 HEKMSTGELLSPSDALRRFLAYVGTSPILGHNANYDYNILDNNLQRYCNDTMQAHDIRCF 634


>gi|323345727|ref|ZP_08085950.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella oralis
           ATCC 33269]
 gi|323093841|gb|EFZ36419.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella oralis
           ATCC 33269]
          Length = 284

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 68/198 (34%), Gaps = 6/198 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGLD  ND II+I  +++    K  R   +F+ P G     E   L GI ++ 
Sbjct: 10  IVFDLETTGLDLVNDHIIQISYIKVYPDGKEERE-NIFVNP-GISIPEEVTLLTGIGNDD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P+F  I S   + F   +      N           L+          R+ID  +I
Sbjct: 68  VKDAPTFKEIASSLCEKFKGCDFAGYNSNHFDIPMLAEEFLRAGIDFDFAHCRLIDAQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          +   ++           A          Y  +M    + N       
Sbjct: 128 FHK----MEKRNLAAAYKFYCGRKMEEDFEAHRADQDTEATYKVLMGELDKYNPETAEEP 183

Query: 190 DRFFKEEKKTVPNISLLK 207
           DR    +   +   S   
Sbjct: 184 DRALANDMDVLAEFSKNN 201


>gi|288556947|ref|YP_003428882.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4]
 gi|288548107|gb|ADC51990.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4]
          Length = 1432

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 6/196 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + IIE+ AV++ +    +R F+ F  P+    +   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYNTIIELAAVKIKNGEIIDR-FESFADPH-EPLTNTIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K +P    +  +F +F     A  +AHNA FD+GF+N   Q+I         I     
Sbjct: 476 MVKGQPEVGEVLKDFHEFVGT--ATLVAHNASFDMGFLNVGYQKIGLGDATNPVIDTLEL 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK++   I   S H A+ D+     +  KM+   ++ N      
Sbjct: 534 GRFLYPELKNHRLNTLCKKF--DIELVSHHRAIYDAEATGYLLWKMVRDANERNVTHHDQ 591

Query: 189 EDRFFKEEKKTVPNIS 204
            +    +   T    S
Sbjct: 592 LNNHMGQGNFTRQRPS 607


>gi|195542024|gb|ACF98221.1| putative DNA polymerase III epsilon subunit [uncultured bacterium
           1114]
          Length = 312

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             D ETTGLD   DRI+ IGAV L       +RTF+  + P G      A  +HGI D  
Sbjct: 30  ALDTETTGLDPGRDRIVAIGAVRLHGRRLYPSRTFETLVRP-GISIPASASAIHGIGDAM 88

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +   P  + I+     +        + H+  FD+  I A  +R     
Sbjct: 89  VAGAPGMAEIWPRLSPWLAG--RVVLGHHVDFDLAMIGAAARRHGFSW 134


>gi|329929867|ref|ZP_08283543.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp.
           HGF5]
 gi|328935845|gb|EGG32306.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp.
           HGF5]
          Length = 971

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 6/177 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  V D ETTG +   D II++G   + +    +R +  ++ P G    P    L GI+
Sbjct: 14  MKFAVLDFETTG-NQSADEIIQVGLAIIEEDRSISRVYGTYVNP-GIPIPPFITGLTGIS 71

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D PS   +  E     ++     + HN  FD  F+   L R    P     +   
Sbjct: 72  DSDVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFSGRILDTM 129

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             +           L  +   +G+       H A  D+   +   +K +    ++  
Sbjct: 130 HFLKICFPSLPSYQLGMVSSHFGLEHDRP--HQADSDALATAYALLKCLEEIDELPL 184


>gi|300173484|ref|YP_003772650.1| DNA polymerase III subunit alpha [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887863|emb|CBL91831.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 1437

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 6/171 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL +  D+IIE+ AV++   +   + F  ++ P G   S    KL  ITD 
Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVKMQLGNVIEK-FSEYINP-GFPLSDFTTKLTSITDT 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    +  +I   F  +  E  A  I HN  FD+GF+NA   R +++ +    I     
Sbjct: 477 MVAHTDTEENIIKRFRQWVGE--AVLIGHNVTFDIGFMNAAYARYSQESITNPVIDTLPF 534

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                       L ++ KR+   I+    H A+ D+     +  +++   +
Sbjct: 535 TRWLYPDYKSYRLGTIAKRFN--INLEQAHRAIFDAETTGHIAWRLIKEAN 583


>gi|261406087|ref|YP_003242328.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           Y412MC10]
 gi|261282550|gb|ACX64521.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           Y412MC10]
          Length = 958

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 6/177 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  V D ETTG +   D II++G   + +    +R +  ++ P G    P    L GI+
Sbjct: 1   MKFAVLDFETTG-NQSADEIIQVGLAIIEEDRSISRVYGTYVNP-GIPIPPFITGLTGIS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D PS   +  E     ++     + HN  FD  F+   L R    P     +   
Sbjct: 59  DSDVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFSGRILDTM 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             +           L  +   +G+       H A  D+   +   +K +    ++  
Sbjct: 117 HFLKICFPSLPSYQLGMVSSHFGLEHDRP--HQADSDALATAYALLKCLEEIDELPL 171


>gi|160878305|ref|YP_001557273.1| DNA polymerase III, epsilon subunit [Clostridium phytofermentans
          ISDg]
 gi|160426971|gb|ABX40534.1| DNA polymerase III, epsilon subunit [Clostridium phytofermentans
          ISDg]
          Length = 235

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
          M  +  DIE+TGL  + DRIIEI A+  +D       F+  + P  
Sbjct: 1  MNFLAIDIESTGLSPEKDRIIEIAAIRYIDGKP-KERFEKLINPGC 45


>gi|288802867|ref|ZP_06408304.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18]
 gi|288334684|gb|EFC73122.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18]
          Length = 896

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 3/120 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGIT 66
           +VFD ETTGL+   D IIEI A+ +           +++    P       +   ++ I 
Sbjct: 515 VVFDTETTGLNVFQDDIIEIAAIRIKGGEVVGEPLDLYIETDKPILPMLGDKENPMYAIY 574

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +      S   +          +  + HNA +D   ++  LQR  KD +    I   
Sbjct: 575 HEKMSTGELLSPSDALQRFLAYVGTSPILGHNANYDYNILDNNLQRYCKDTMQAHDIRCF 634


>gi|326803581|ref|YP_004321399.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651581|gb|AEA01764.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 1437

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 75/199 (37%), Gaps = 5/199 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL +  + IIEIGAV++   +     F  FL P    +S            
Sbjct: 421 YVIFDVETTGLSAVYNTIIEIGAVKMHKGNVVGE-FSEFLNPGHHLSSFTTELTGITDSM 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               +P    +          Q    +AHNA FDVGFI+A  QR     ++   I     
Sbjct: 480 VANARPEPEVMQDFLD---FCQGTILVAHNASFDVGFIDAAYQRNGLPTIENPVIDTLEL 536

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKH-GALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                       LN+L K + +++ H  +       +  L+ +++K       + +  + 
Sbjct: 537 ARYLYPHLKSFRLNTLSKHFNVSLEHHHRAIYDATSTGALAWIFVKEAKESHDMVYHDQL 596

Query: 188 NEDRFFKEEKKTVPNISLL 206
           N D    +  K        
Sbjct: 597 NRDIGQGDAYKKGRPFHAT 615


>gi|268317061|ref|YP_003290780.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252]
 gi|262334595|gb|ACY48392.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252]
          Length = 616

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGL  +  D II IGAV ++        TF   + P  R  S +++++HGI   
Sbjct: 424 VFDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEETFDQLVNP-RRPISLDSVRVHGIQPV 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            L+DKP    +   F+     ++   + HN  FD+ FI  + +
Sbjct: 483 LLQDKPPIEEVLPRFYR--FARDTVLVGHNVAFDLKFIRQKEK 523


>gi|188586746|ref|YP_001918291.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351433|gb|ACB85703.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 864

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 79/217 (36%), Gaps = 9/217 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFD+ETTGLD+  D IIE+ A++       +  F  +L  +        +       
Sbjct: 499 KLVVFDVETTGLDTTKDEIIELAALKAGKDGVVDE-FHEYLRNSKPVGESFQVHGISDQV 557

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              + KP   S+ S         + + + HN  +D+  +  + +++    L+        
Sbjct: 558 LLEQGKPPEKSLASFTN---FIDDCDLVGHNVNYDITMVENQCKKLLNQDLELHGYDTVD 614

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
              R      + +L SLC+   I+   +  H A+ D     ++   ++          + 
Sbjct: 615 ISRRYFPRLEKYNLESLCEDLQIS--SKPTHRAMDDVEATFELLQILLEKIK-PGIEKRK 671

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
                + ++   +       R K L  R    EL  H
Sbjct: 672 EYVNSYGDKFANLAIALNSWRRKTLTMRPP--ELLSH 706


>gi|71907536|ref|YP_285123.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71847157|gb|AAZ46653.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 453

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 7   MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR + F D+ETTG  + +DRI EIG VE+       R +Q  + P G +  P   +L GI
Sbjct: 1   MRPLAFVDLETTGATATHDRITEIGIVEVDADGSV-REWQQLVNP-GMRIPPFIEQLTGI 58

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           +DE + D P F +I  E           +IAHNA+FD GF+  E +
Sbjct: 59  SDEMVADAPPFEAIAGEVMKRLEG--RLFIAHNARFDYGFLKNEFK 102


>gi|319638605|ref|ZP_07993367.1| DNA polymerase III subunit [Neisseria mucosa C102]
 gi|317400354|gb|EFV81013.1| DNA polymerase III subunit [Neisseria mucosa C102]
          Length = 463

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 7/171 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG +   DRI E+  V       T   ++  + P  R       +L GI DE 
Sbjct: 22  VVVDLETTGGNFYQDRITEVALVRFEQGRAT--HYEQLVNP-CRSIPEFVARLTGIHDET 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+ P F+ I ++         A  +AHN++FD  F+  E  RI+ D    +  + T+ +
Sbjct: 79  VKNAPVFADIAADLLPLLQG--AVVVAHNSRFDYTFLRHEFARIHTD--FAAPSLCTVQL 134

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +RR +P                 +            L   + + +     Q
Sbjct: 135 SRRLYPEFYKHSLDSIIERTGIQTANRHRAMTDVVALCDYLELSLTEKNHQ 185


>gi|134299597|ref|YP_001113093.1| DNA polymerase III subunit epsilon [Desulfotomaculum reducens MI-1]
 gi|134052297|gb|ABO50268.1| DNA polymerase III, epsilon subunit [Desulfotomaculum reducens
           MI-1]
          Length = 930

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 86/222 (38%), Gaps = 17/222 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +  D+ET+GLD   D IIEIG V+++D  +   +F   + P G     +  +L GI D
Sbjct: 3   NFVALDLETSGLDCLQDEIIEIGLVKMVDGKEI-DSFSTLIRPKGI-LPVKIKRLTGIKD 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L+D P    +      F  +     + HN KFD  F++  +Q    +PL  +  +   
Sbjct: 61  HELQDAPKLQEVLPVILQFIAD--LPLVGHNVKFDYDFLSTAVQSPLANPLYDTLELSKY 118

Query: 128 SIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +      +S + L  LC   G  I   HR+   A   + LL  +  +      ++ +  
Sbjct: 119 LMPG----ASNHRLGYLCSYLGIDIPNQHRALDDARGAAMLLIHLLNQCEEMEPELIWQL 174

Query: 186 KTNEDRFFKEEKKTVPNIS-------LLKRDKPLFTRITKEE 220
                +        +  +S         ++        T+E+
Sbjct: 175 SQFLSKSGSLWHSVLETLSSRMIKMFPDRKITATIPGATEED 216


>gi|172057851|ref|YP_001814311.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
           255-15]
 gi|171990372|gb|ACB61294.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
           255-15]
          Length = 1431

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 7/197 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  ++IIE+ AV++ D    ++ F+ F  P     S   + L GITDE
Sbjct: 414 FVVFDVETTGLSAMYNKIIELAAVKIYDGDVIDK-FEAFADPK-HLLSATTIDLTGITDE 471

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ KP    +  EF D      +  +AHNA FD+GF+NA L+  N +      I     
Sbjct: 472 MVRGKPDPEQVVKEFMD--WAGGSILVAHNASFDIGFLNATLRSGNHEESTLPVIDTLEL 529

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L KR+   I     H A+ D+     + +K++    ++ F  KT+
Sbjct: 530 ARVLMPSLKNHRLNTLAKRF--DIELTQHHRAIYDAEATGYLMLKLLQMADEM-FNMKTH 586

Query: 189 EDRFFKEEKKTVPNISL 205
                +  K        
Sbjct: 587 LSLNREMGKDISRARPY 603


>gi|329940730|ref|ZP_08290010.1| exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329300024|gb|EGG43922.1| exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 336

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 8/163 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L    +    +   + P      P  + +HG+T E
Sbjct: 22  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTTVNPER---DPGPVWIHGLTSE 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  +  EF           +AHNA FD   I  E  R  ++P    R+     
Sbjct: 78  ALEGAPLFHEVAGEFAARLTG--RVLVAHNAVFDWSMIAREYARAGQEPPVRQRLCTIAL 135

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                 P   + L +L   +G+       H AL D+ +L++ +
Sbjct: 136 SKALALPLPNHKLETLAAHFGVVQRRA--HHALDDARVLAEAF 176


>gi|26554369|ref|NP_758303.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
 gi|26454379|dbj|BAC44707.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
          Length = 1458

 Score = 68.4 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 5/195 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL    D+IIE GA++     +   + Q+F+ P   K S +   +  I++E
Sbjct: 421 YVIFDIETTGLSPYYDKIIEFGAIKYHKGVQV-ESIQMFINPE-EKISDKIFAITKISNE 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +KD         +  DF  +  +  IAHN  KFD+ F+N +L+    D +    I    
Sbjct: 479 DVKDALKIKEALVKIKDFIGD--SVLIAHNGIKFDLPFLNCKLEENKMDIIKNPLIDTLQ 536

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                      + L  + ++Y I       H A  D+  L +++ +M+      +     
Sbjct: 537 ISRAINEQIHGHSLGVIARKYKIDYDETQAHRADKDAEYLLNIWKRMLENQKLQDIKTLN 596

Query: 188 NEDRFFKEEKKTVPN 202
             +   + +     N
Sbjct: 597 EINSNLQNDFLRERN 611


>gi|308235755|ref|ZP_07666492.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14018]
          Length = 301

 Score = 68.4 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 11/179 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTGL +  D IIEIG + + +    +R +   + P   +       L GIT++
Sbjct: 16  YCVLDTETTGLSAYYDEIIEIGILRVRNNEIVDR-YDQLIKP-SIEVDGFITALTGITND 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D PS SS+ ++   F +E     + HN  FD+ F+N   +    +     + +DT+ 
Sbjct: 74  MLEDMPSISSVKNDVLSFISE--DIILGHNTSFDMRFLNEGFKEQLSN-----QYMDTMQ 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            AR+ +P  ++   S          H ++H AL D     ++Y  +     + N   + 
Sbjct: 127 FARKLYPELKHHRLS--DLTDYLGLHNNEHRALADCIATKELYDAVKSRMVEKNLAIED 183


>gi|302550499|ref|ZP_07302841.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
 gi|302468117|gb|EFL31210.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
          Length = 330

 Score = 68.4 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 8/170 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L    +    +   + P      P  + +HG+T E
Sbjct: 23  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTMVNPER---DPGPVWIHGLTSE 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  EF           +AHNA FD   I  E  R  ++     R+     
Sbjct: 79  ALEGAPLFQDIAEEFTTRLEG--RVLVAHNAVFDWQMIAREYARAQREVPVRQRLCTIAL 136

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 P   + L SL   YG+       H AL D+ +L++ +   +   
Sbjct: 137 SKELGLPLPNHKLESLAAHYGVVQRRA--HHALDDARVLAEAFQPSLRAA 184


>gi|260063517|ref|YP_003196597.1| putative DNA polymerase III subunit epsilon [Robiginitalea
           biformata HTCC2501]
 gi|88782961|gb|EAR14135.1| putative DNA polymerase III epsilon chain [Robiginitalea biformata
           HTCC2501]
          Length = 258

 Score = 68.4 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 70/178 (39%), Gaps = 8/178 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG +   DRI+E+  +++  + +K ++T+   + P G     EA  +HGITDE 
Sbjct: 11  FFDLETTGTNIATDRIVELAILKVFPNGNKESKTW--LVNP-GVPIPEEASAIHGITDEK 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +P+F  +  E +      +      N           L+      +  +  +D  +I
Sbjct: 68  VAGEPTFRELAREVYQMIQGCDLAGFNSNRFDIPLLAEELLRAGVDFDMKNAVSVDVQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
             +          +   ++         H A  D+    +V +  +   S++    + 
Sbjct: 128 FHK----MEKRTLAAAYQFYCGKELTDAHSATADTQATYEVLLSQLDRYSELTNNVQE 181


>gi|332668025|ref|YP_004450813.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM
           1100]
 gi|332336839|gb|AEE53940.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 463

 Score = 68.4 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 7/174 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K +  + D+ETTG  +  DRIIEI  V + D ++   +++  + P           L GI
Sbjct: 2   KKKYAIIDVETTGGKASRDRIIEIAVV-IHDGNQILESWESLINPET-LIPWNITILTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+ + + P F  +  +  +    + A ++AHNA+FD  FI  E +R+            
Sbjct: 60  NDQMVANAPKFYEVARKIVE--LTEGAIFVAHNARFDYSFIGEEFKRLGYTYTRKQLCTL 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            L+        +              I ++++H A+ D      V   ++    
Sbjct: 118 RLARQTLPGLYAYGLD---ALSRHFNIHNQARHRAMGDVQATIKVLEYILQHED 168


>gi|302338443|ref|YP_003803649.1| DNA polymerase III subunit epsilon [Spirochaeta smaragdinae DSM
           11293]
 gi|301635628|gb|ADK81055.1| DNA polymerase III, epsilon subunit [Spirochaeta smaragdinae DSM
           11293]
          Length = 210

 Score = 68.4 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 47/97 (48%), Gaps = 4/97 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD ETTGLDS  DRI+EIGAV       T  TF   + P G    P +  +HGITD+
Sbjct: 25  FVSFDFETTGLDSFRDRILEIGAVSWRQGK-TKETFSSLVRP-GIPVPPASTAVHGITDD 82

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            L D P        F  F        +AHN  FD GF
Sbjct: 83  DLLDAPDEKGALVSFLRFIEG--KVAVAHNLPFDYGF 117


>gi|297584227|ref|YP_003700007.1| exonuclease RNase T and DNA polymerase III [Bacillus
           selenitireducens MLS10]
 gi|297142684|gb|ADH99441.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           selenitireducens MLS10]
          Length = 233

 Score = 68.4 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 68/174 (39%), Gaps = 6/174 (3%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           VFD+ETTG    K DRI+ IG V++ +   T+ TF  F+              H    + 
Sbjct: 53  VFDLETTGFFPQKQDRILSIGGVKIKNNEITDDTFYSFV---YYDQPISETIRHLTGIQE 109

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                + +        F   ++  +IAH+A  + GF+   L R  +       I      
Sbjct: 110 EDVLNAPAEADVLTRFFAFAEDDLFIAHHAAHEKGFMQDALWRSFRATFQRRLIDTIFLT 169

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             +       +L + C+ + I      +H AL D+ L ++++I  +     +  
Sbjct: 170 KLQPDLRDTAELEACCRYFNIE--PAGRHHALHDAKLAAELWIHSVNVMESMGI 221


>gi|269219422|ref|ZP_06163276.1| exonuclease, DNA polymerase III, epsilon subunit family
          [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211118|gb|EEZ77458.1| exonuclease, DNA polymerase III, epsilon subunit family
          [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 206

 Score = 68.4 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50
          M   V D+ETTGL    DRI+EIG V L +  +    +Q  + P
Sbjct: 1  MGYAVVDVETTGLSPVRDRIVEIGVVLLDESGEPEGEWQSLVNP 44


>gi|315652207|ref|ZP_07905202.1| DNA polymerase III PolC-type [Eubacterium saburreum DSM 3986]
 gi|315485513|gb|EFU75900.1| DNA polymerase III PolC-type [Eubacterium saburreum DSM 3986]
          Length = 237

 Score = 68.4 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 73/205 (35%), Gaps = 10/205 (4%)

Query: 7   MR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           MR    +  D+ETTG+    D+IIE+G +++++ S     F   + PN     P + K+ 
Sbjct: 1   MRIKDYVAIDLETTGISVSKDKIIEVGLIKVIN-SHIEEMFSCIINPNM----PVSTKIL 55

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            +T     +  +   I     D     +   +  +          +         +   I
Sbjct: 56  NLTGIDENEIKTARYIQDVIGDIVEFCDGFDLIGHNTIFDYSFIKKEANNAGLNFEKRGI 115

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                  +   P  + +L   C  +GI    ++ H A  D++    +Y +++    ++  
Sbjct: 116 DTYKLCKKILPPYIQKNLTDACAYFGIE--RKNMHRAFSDAYFTHMLYQEILTNFKELEI 173

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKR 208
             +  + +  K           L++
Sbjct: 174 ISEIMKVKLKKNVPIRKRTKEDLQK 198


>gi|313672047|ref|YP_004050158.1| DNA polymerase iii, epsilon subunit [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312938803|gb|ADR17995.1| DNA polymerase III, epsilon subunit [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 201

 Score = 68.4 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 10/173 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            +VFD+ETTGL+    D+IIE+GA ++ +        F   + P+    +     +HGIT
Sbjct: 17  FVVFDLETTGLNPDNGDQIIEMGAFKIEEGFKLVRDPFHTMVKPDIFIPNE----IHGIT 72

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  LK+ P   +   +F D    + +  +AH A  D+ F+ A ++    D      +IDT
Sbjct: 73  EMELKNAPDICTALYDFID--FSRGSVLVAHKASKDIAFLRAAMREYLIDDSFDFLVIDT 130

Query: 127 LSIARRKHPSSRNDLNSLC--KRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +  ++R +P  +         K +    S   +H A+ D+   + +++KM+  
Sbjct: 131 IKFSQRLYPDFKYHNLDYLIEKHHISINSKFKRHRAIYDAEATAKIFLKMIRK 183


>gi|227510250|ref|ZP_03940299.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189902|gb|EEI69969.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 1438

 Score = 68.4 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 5/189 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD ETTGL +  DR+IE+ AV++ + +  ++ F+ F+ P G   S +   L  ITDE
Sbjct: 419 YVVFDTETTGLSAIYDRVIELSAVKMKNSNVIDQ-FEEFIDP-GFHLSEQTTNLTSITDE 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    S   +F  F DF  +  A  + HN  FD+GF+N    R     +  + IIDTL+
Sbjct: 477 MVHGSKSEEEVFKLFRDFCED--AIVVGHNVTFDIGFMNTGYVRHGMPEI-KNPIIDTLT 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +AR  +P+ R    +   +                       Y+ +     +    +   
Sbjct: 534 LARFLYPNMRGYRLNTLAKKFDVNLEHHHRAIYDAETTGHLNYLFLKDAEDRYGIVYHDE 593

Query: 189 EDRFFKEEK 197
            +    E  
Sbjct: 594 LNDHMTEND 602


>gi|227513179|ref|ZP_03943228.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
 gi|227083560|gb|EEI18872.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
          Length = 1438

 Score = 68.4 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 5/189 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD ETTGL +  DR+IE+ AV++ + +  ++ F+ F+ P G   S +   L  ITDE
Sbjct: 419 YVVFDTETTGLSAIYDRVIELSAVKMKNSNVIDQ-FEEFIDP-GFHLSEQTTNLTSITDE 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    S   +F  F DF  +  A  + HN  FD+GF+N    R     +  + IIDTL+
Sbjct: 477 MVHGSKSEEEVFKLFRDFCED--AIVVGHNVTFDIGFMNTGYVRHGMPEI-KNPIIDTLT 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +AR  +P+ R    +   +                       Y+ +     +    +   
Sbjct: 534 LARFLYPNMRGYRLNTLAKKFDVNLEHHHRAIYDAETTGHLNYLFLKDAEDRYGIVYHDE 593

Query: 189 EDRFFKEEK 197
            +    E  
Sbjct: 594 LNDHMTEND 602


>gi|193213751|ref|YP_001994950.1| hypothetical protein Ctha_0031 [Chloroherpeton thalassium ATCC
           35110]
 gi|193087228|gb|ACF12503.1| DNA polymerase III, epsilon subunit [Chloroherpeton thalassium ATCC
           35110]
          Length = 578

 Score = 68.4 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 10/206 (4%)

Query: 9   KIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG L  +N RIIEI A++  +  +     +  + P  ++ S    +  GIT+
Sbjct: 24  FAVVDLETTGGLKPEN-RIIEICAIKCRNGQEVG-MLESLVNPE-QQISYFISQYTGITN 80

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + + P   S+ ++  +FF E    ++AHN  FD+GFIN EL+R     L    +    
Sbjct: 81  SMVDNAPVIQSLLTKVSEFFQE--TIFVAHNVPFDMGFINMELERNGYAKLTNRWLCTFR 138

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
              R      + +L  L K +G  I   ++H A  D      +  ++++   + +     
Sbjct: 139 LARRLLPTQQKKNLGDLAKYFG--IIVENRHRARGDCEATIKLLAELIILAQEQH--GVE 194

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF 213
             +     + K + N     R     
Sbjct: 195 TAEELLSLQFKAIRNFKREPRHFSKI 220


>gi|306840939|ref|ZP_07473681.1| DNA polymerase III subunit epsilon [Brucella sp. BO2]
 gi|306289062|gb|EFM60324.1| DNA polymerase III subunit epsilon [Brucella sp. BO2]
          Length = 332

 Score = 68.0 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 73/234 (31%), Gaps = 23/234 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +K +           D         IAHNA FD  F+    +R +    +      
Sbjct: 134 TDEMVKGRTIPRDEL----DALIAGADIIIAHNAGFDRPFL----ERFSIAFANKPWACS 185

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178
              I           L  L  + G   +             +          + +++   
Sbjct: 186 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKITPFAELLKAS 245

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
            +           F  ++               R K  +T + ++EL+   + +
Sbjct: 246 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 299


>gi|171317951|ref|ZP_02907125.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171096851|gb|EDT41725.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 205

 Score = 68.0 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 8/173 (4%)

Query: 7   MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+ + V D ETTGL     DR  EI  + L D    +R +Q  +   GR+   + + L G
Sbjct: 1   MQTVAVLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLMN-AGRRIPSDVVALTG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E +   P  S +  E   F    N   +AHNA FD  F     +             
Sbjct: 59  ITNEMIASAPPVSQVMKEAAAFV--GNHPVVAHNAGFDKRFWQ--AELGMLGMAAEHAFA 114

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            T+ +ARR +P +R+   S              H A++D+ + S ++ ++   
Sbjct: 115 CTMLVARRIYPHARSHRLSSLADMLRLPQTGRAHRAMVDAEIASHLWCRLQRD 167


>gi|115359655|ref|YP_776793.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
 gi|172064467|ref|YP_001812118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
 gi|115284943|gb|ABI90459.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
 gi|171996984|gb|ACB67902.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 205

 Score = 68.0 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 8/173 (4%)

Query: 7   MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+ + V D ETTGL     DR  EI  + L D    +R +Q  +   GR+   + + L G
Sbjct: 1   MQTVAVLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLMN-AGRRIPSDVVALTG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E +   P  S +  E   F    N   +AHNA FD  F     +             
Sbjct: 59  ITNEMIASAPPVSQVMKEAAAFV--GNHPVVAHNAGFDKRFWQ--AELGMLGMAAEHAFA 114

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            T+ +ARR +P +R+   S              H A++D+ + S ++ ++   
Sbjct: 115 CTMLVARRIYPHARSHRLSSLADMLRLPQTGRAHRAMVDAEIASHLWCRLQRD 167


>gi|194015490|ref|ZP_03054106.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061]
 gi|194012894|gb|EDW22460.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061]
          Length = 240

 Score = 68.0 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 17/173 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLC-PNGRKNSPEALKL 62
            +V D+ETTGLD K D+IIEIGA+++    +         F   +    GR        L
Sbjct: 6   YVVLDLETTGLDHKKDQIIEIGAIKIRLGGRVREFEEVSRFHTMVALEEGRDLPEFITNL 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT+E L+D P       E  +F  +  A  +A NA FD+ FI+       +  ++P R
Sbjct: 66  TGITEEDLEDAPEEWDALDELQNFIGD--AIVVAQNAPFDLSFIS-------RGDIEPER 116

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              T ++AR   P     L  + KR GI+      H AL D     +V+ + +
Sbjct: 117 FYCTRAMARFVEPELSASLKDVTKRIGIS--LDGHHRALNDVEATIEVFRRYL 167


>gi|315646467|ref|ZP_07899585.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex
           V453]
 gi|315278110|gb|EFU41430.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex
           V453]
          Length = 961

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 6/177 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  V D ETTG +   D II++G   + +    +R +  ++ P G    P    L GI+
Sbjct: 1   MKFAVLDFETTG-NQSADEIIQVGLAIIEEDRSISRVYGTYVNP-GIPIPPFITGLTGIS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D PS   +  E     ++     + HN  FD  F+   L R    P     +   
Sbjct: 59  DSDVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFSGRILDTM 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             +       S   L  +   +G+       H A  D+   +   +K +    ++  
Sbjct: 117 HFLKICFPSLSSYQLGMVSSHFGLEHDRP--HQADSDALATAYALLKCLEEIDELPL 171


>gi|240143784|ref|ZP_04742385.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
 gi|257204219|gb|EEV02504.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
          Length = 228

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 70/179 (39%), Gaps = 6/179 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTN-RTFQVFLCPNGRKNSPEALKLHGI 65
           + + FD ETTGLD + D+IIE+ A  +  +  +     F     P G K   + ++L  I
Sbjct: 6   KIVFFDTETTGLDPEKDQIIELAAALVTENGIELKIDAFCKL--PEGEKIPEKIVELTHI 63

Query: 66  -TDEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRI 123
             D        +      F +  +  +    +AHN +FD+ FI    +R    P  P   
Sbjct: 64  TDDMLADKGIDYREACRIFCNMLHSDSEVLLVAHNIQFDLLFILEMFKRCGMVPKAPKLR 123

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
                   +   +  + L +  + YG+    ++ H A+ D   L +V   M      + 
Sbjct: 124 ALDSLTVYKDRAAYPHKLANAIEHYGLADKVQNSHRAIDDVLALYEVTKAMSEERDDLT 182


>gi|227524394|ref|ZP_03954443.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
 gi|227088625|gb|EEI23937.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
          Length = 1438

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 5/189 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD ETTGL +  DR+IE+ AV++ + +  ++ F+ F+ P G   S +   L  ITDE
Sbjct: 419 YVVFDTETTGLSAIYDRVIELSAVKMKNSNVIDQ-FEEFIDP-GFHLSEQTTNLTSITDE 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    S   +F  F DF  +  A  + HN  FD+GF+N    R     +  + IIDTL+
Sbjct: 477 MVHGSKSEEEVFKLFRDFCED--AIVVGHNVTFDIGFMNTGYVRHGMPEI-KNPIIDTLT 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +AR  +P+ R    +   +                       Y+ +     +    +   
Sbjct: 534 LARFLYPNMRGYRLNTLAKKFDVNLEHHHRAIYDAETTGHLNYLFLKDAEDRYGIVYHDE 593

Query: 189 EDRFFKEEK 197
            +    E  
Sbjct: 594 LNDHMTEND 602


>gi|170697844|ref|ZP_02888929.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170137231|gb|EDT05474.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 205

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 8/173 (4%)

Query: 7   MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+ + V D ETTGL     DR  EI  + L D    +R +Q  +   GR+   + + L G
Sbjct: 1   MQTVAVLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLMN-AGRRIPSDVVALTG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E +   P  S +  E   F    N   +AHNA FD  F     +             
Sbjct: 59  ITNEMIASAPPVSQVMKEAAAFV--GNHPLVAHNAGFDKRFWQ--AELGMLGMAAEHAFA 114

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            T+ +ARR +P +R+   S              H A++D+ + S ++ ++   
Sbjct: 115 CTMLVARRIYPHARSHRLSSLADMLRLPQTGRAHRAMVDAEIASHLWCRLQRD 167


>gi|251796155|ref|YP_003010886.1| hypothetical protein Pjdr2_2143 [Paenibacillus sp. JDR-2]
 gi|247543781|gb|ACT00800.1| DNA polymerase III, epsilon subunit [Paenibacillus sp. JDR-2]
          Length = 244

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 7/168 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTG      D II  GAV +        R F   + P  R+   + ++L GIT+
Sbjct: 61  VVFDLETTGFYPSNGDEIISFGAVHMKGLELDESRQFYSLVNPK-RRIPRQIIELTGITN 119

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++D P    +  +F +F        IAH A  D  F+NA L R +K  L+   +   L
Sbjct: 120 EMVQDAPDLMQVLHDFMEFI--GRRLLIAHAAGHDKQFLNAALWRTSKVSLNHRVLDTML 177

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                +   +   L+ L +  GI I    +H AL DS + + ++ + +
Sbjct: 178 VAKWLEPKRASYALDDLLEDCGIPI--TERHHALQDSLMTAKLWQQFL 223


>gi|163791589|ref|ZP_02185990.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carnobacterium sp. AT7]
 gi|159873138|gb|EDP67241.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carnobacterium sp. AT7]
          Length = 1395

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 75/198 (37%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + IIE+ AV++   +    +F+ F+ P    +      ++     
Sbjct: 426 YVVFDVETTGLSAVYNSIIELSAVKMHKGNII-ESFEQFIDPG---HPLSQTTINLTGIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S             ++  +AHNA FD+GF+N    + N    +   I     
Sbjct: 482 DEMVQGSKSEEEVLTLFKEFAGDSILVAHNASFDMGFLNTSNAKHNIPDAENPVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187
                     + LN+L K+YG+       H A+ D+       ++ +     + +  F+ 
Sbjct: 542 SRFLHPQFKSHRLNTLAKKYGVN--LEQHHRAIFDAETTGHLCWVFLKEAREEHDIHFQD 599

Query: 188 NEDRFFKEEKKTVPNISL 205
             +    E          
Sbjct: 600 QLNEHTGEGDAYKRARPF 617


>gi|239502706|ref|ZP_04662016.1| hypothetical protein AbauAB_10367 [Acinetobacter baumannii AB900]
          Length = 179

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 61/163 (37%), Gaps = 3/163 (1%)

Query: 12  FDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D ETTGL+ +  D+IIEI  ++          F   + P  R   P+A  +HGI+   L
Sbjct: 8   VDTETTGLEVENGDKIIEIALIKYDLDGAKLEEFVQRIDPE-RNIDPKAQAVHGISYSDL 66

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P F  I  E         +  +AHN  FD  FI  EL+R    P   S         
Sbjct: 67  IGCPKFVDIAEEV-ASIVNHASLLVAHNFAFDGPFIATELKRAGMTPKKVSSFCTMEYGR 125

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                     L  LC   G+     + H A  D  ++   + K
Sbjct: 126 WATFDGKYPKLADLCFSLGVEYDASAAHAASYDVDVMMQCFFK 168


>gi|170733343|ref|YP_001765290.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|169816585|gb|ACA91168.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 212

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 83/213 (38%), Gaps = 8/213 (3%)

Query: 4   KNKMRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            + M+ + V D ETTGL     DR  EI  + L D    +R FQ  +   GR+   + + 
Sbjct: 5   NSTMQTVAVLDFETTGLSPNLGDRATEIAVILLRDGQVVDR-FQSLMN-AGRRIPSDVVA 62

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT++ +   P  S +  E   F  +     +AHNA FD  F     +          
Sbjct: 63  LTGITNDMIATAPPASEVMKEAAAFVGK--HAVVAHNAGFDKRFWQ--SELGMLGMSADH 118

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
               T+ +ARR +P +R+   S              H A++D+ +   ++ ++    S+ 
Sbjct: 119 AFACTMLVARRIYPDARSHRLSSLAEMLRLPQTGRAHRAMVDAEMAGHLWCRLQQDISRT 178

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214
               + +     + +  T   + +  R      
Sbjct: 179 YGLDRIDHALMSQVQVTTKAKVPMYLRSLVRVH 211


>gi|107028837|ref|YP_625932.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116690004|ref|YP_835627.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|105898001|gb|ABF80959.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116648093|gb|ABK08734.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
          Length = 212

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 8/173 (4%)

Query: 4   KNKMRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            + M+ + V D ETTGL     DR  EI  + L +    +R FQ  +   GR+   + + 
Sbjct: 5   NSTMQTVAVLDFETTGLSPNLGDRATEIAVILLRNGQVVDR-FQSLMN-AGRRIPSDVVA 62

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT++ +   P  S +  E   F  +     +AHNA FD  F     +          
Sbjct: 63  LTGITNDMIATAPPASEVMKEAAAFVGK--HAVVAHNAGFDKRFWQ--SELGMLGMSADH 118

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               T+ +ARR +P +R+   S              H A++D+ +   ++ ++
Sbjct: 119 AFACTMLVARRIYPDARSHRLSSLAEMLRLPQTGRAHRAMVDAEMAGHLWCRL 171


>gi|320353730|ref|YP_004195069.1| DNA polymerase III, subunit epsilon [Desulfobulbus propionicus DSM
           2032]
 gi|320122232|gb|ADW17778.1| DNA polymerase III, epsilon subunit [Desulfobulbus propionicus DSM
           2032]
          Length = 218

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTG    + DR IE+GAV +      +R FQ  + P G   S    +L GI+++
Sbjct: 7   IVLDFETTGHSPNRGDRPIEVGAVRIEHDRIVDR-FQALMNP-GFTISWFIERLTGISND 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P    + + F D+  +     +AHNA FD  F++AEL  I +     + +  T+ 
Sbjct: 65  LIAHAPPCEEVMNRFADWMGD--LPLVAHNAGFDRAFLDAELALIGRH--QSNPMACTVL 120

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +RR  P S N   +    +    +  + H AL D+ +   V+I M 
Sbjct: 121 ASRRLFPESPNHKLATLVNHLGIFTDGTFHRALADAEMTGHVWIAMT 167


>gi|311114663|ref|YP_003985884.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019]
 gi|310946157|gb|ADP38861.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019]
          Length = 307

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 11/179 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTGL +  D IIEIG + + +    +R +   + P   +       L GIT++
Sbjct: 22  YCVLDTETTGLSAYYDEIIEIGILRVRNNEIVDR-YDQLIKP-SIEVDGFITALTGITND 79

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D PS SS+ ++   F +E     + HN  FD+ F+N   +    +     + +DT+ 
Sbjct: 80  MLEDMPSISSVKNDVLSFISE--DIILGHNTSFDMRFLNEGFKEQLSN-----QYMDTMQ 132

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            AR+ +P  ++   S          H ++H AL D     ++Y  +     + N   + 
Sbjct: 133 FARKLYPELKHHRLS--DLTDYLGLHNNEHRALADCIATKELYDAVKSRMVEKNLAIED 189


>gi|84496154|ref|ZP_00995008.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649]
 gi|84382922|gb|EAP98803.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649]
          Length = 572

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 65/198 (32%), Gaps = 4/198 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       I EIGAV++         FQ F+ P G+        L GITD 
Sbjct: 20  FVVVDLETTGGSPSECGITEIGAVKVRAGEVLGE-FQTFVNP-GQPIPAFISVLTGITDA 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P        F +      +  +AHNA FDV F+ A   R  +D      +     
Sbjct: 78  MVRDAPRVEPALVAFLE--FAAGSVLVAHNAGFDVSFLKAACGRAERDWPSFPVVDTVHL 135

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +        +            +    H AL D+    DV   ++     +       
Sbjct: 136 ARQLVTRDEAPNHRLGSLAVLFGATTTPDHRALHDARATVDVLHGLIARVGSLGVHSLEE 195

Query: 189 EDRFFKEEKKTVPNISLL 206
              +             L
Sbjct: 196 LKAYSSRVPAATRRKRHL 213


>gi|71907264|ref|YP_284851.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71846885|gb|AAZ46381.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 721

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 8/166 (4%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGL+    D II+IGA  +++       TF   + P        ++ +HGIT++
Sbjct: 533 VFDTETTGLEPSNGDEIIQIGAARIVNNRLLRQETFNQIVDPEIPLKPA-SIPIHGITED 591

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ +P+   +   F +F  +     IAHNA FD+ F+  + +R N     P      LS
Sbjct: 592 MVRGQPNIDVVLPAFHEFCED--TVLIAHNAAFDMRFLQLKEERTNIRFTQPVLDTLLLS 649

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                +  S      L +   + I+   +H AL D+    +V++K+
Sbjct: 650 AVVHPNQESHKLDVILER---LGITIGKRHNALEDALATGEVFLKL 692


>gi|254712763|ref|ZP_05174574.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|254715832|ref|ZP_05177643.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261217593|ref|ZP_05931874.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1]
 gi|261320470|ref|ZP_05959667.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M644/93/1]
 gi|260922682|gb|EEX89250.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1]
 gi|261293160|gb|EEX96656.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M644/93/1]
          Length = 329

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 54/227 (23%), Gaps = 12/227 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E   +   
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITGITDE 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             +                D     N      +  F      A   +     +       
Sbjct: 134 MVKGRTIPRDELDALIAEADIIIAHN---AGFDRPFLERLSIAFANKPWACSVKEIDWTA 190

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                 +                               S   +  + +++    +     
Sbjct: 191 RGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTP-FAELLKASQRARMRI 249

Query: 186 KTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
                 F  ++               R K  +T + ++EL+   + +
Sbjct: 250 YAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 296


>gi|145219710|ref|YP_001130419.1| DNA polymerase III, epsilon subunit [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205874|gb|ABP36917.1| DNA polymerase III, epsilon subunit [Chlorobium phaeovibrioides DSM
           265]
          Length = 221

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 8/182 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +VFD ETTG D +NDR+I IGAV L   + T   +F+V +   G            + 
Sbjct: 33  RFVVFDTETTGFDLQNDRVISIGAVALEGSAITIADSFEVLVRQPGVGQKESVSVHGLLK 92

Query: 67  DE-----FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            +       +D  +    +        +  +  +A   +         L     D    +
Sbjct: 93  KDIASGVSERDGVTSFLDYIGNSILVAQHASFDVAMLNRLLWELFRIRLFNGVVDTASLA 152

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           + ++        H +    L+ LC+RYGI      +H +  D++L + +  +++  G   
Sbjct: 153 KRLEKGPYHNLAHKAGEYRLDHLCQRYGIR--LHDRHTSAGDAYLTAQLLQRLLAKGRTA 210

Query: 182 NF 183
             
Sbjct: 211 GI 212


>gi|156368138|ref|XP_001627553.1| predicted protein [Nematostella vectensis]
 gi|156214466|gb|EDO35453.1| predicted protein [Nematostella vectensis]
          Length = 275

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 9/115 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCP--NGRKNS 56
           MI +N     V D+ETTGL   NDRI++I  V++     T    ++  ++ P  +  K  
Sbjct: 20  MIPRNAT-YCVLDVETTGLSKLNDRIVQIACVKV---KPTGDKESWMSYINPCMDREKQL 75

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
               K+H ++ + L  KP FS I    W F        +A+N  +D   +  E +
Sbjct: 76  AGGYKVHHLSPDMLLKKPKFSEIVESLWRFLCGAEY-LVAYNCLYDWDMLCQEFR 129


>gi|326333554|ref|ZP_08199794.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae
           bacterium Broad-1]
 gi|325948663|gb|EGD40763.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae
           bacterium Broad-1]
          Length = 580

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 66/202 (32%), Gaps = 5/202 (2%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG        I EIGAV++         FQ  + P+     P    L GIT+  
Sbjct: 46  VVDLETTGNSPDNGGMITEIGAVKVRGGEVLGE-FQTLVNPHT-GIPPSIAVLTGITNSM 103

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P+  S+   F +    +    +AHNA FDVGF+     +  +       +      
Sbjct: 104 VASSPTIESVLPAFLE--FAEGCVLVAHNAPFDVGFLKHFAAKQERPWPRFEVLDTVKIA 161

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
            R        +                 H AL D+    DV   MM     +      + 
Sbjct: 162 RRVITRDEAPNHKLGSLARVFGSPTTPNHRALQDARATVDVLHGMMERLGNLGVLTLEDL 221

Query: 190 DRFFKEEKKTVPNISLLKRDKP 211
             F  +          L  D P
Sbjct: 222 AAFSAKVTTAQRKKRHLAEDLP 243


>gi|319651314|ref|ZP_08005444.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp.
          2_A_57_CT2]
 gi|317397094|gb|EFV77802.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp.
          2_A_57_CT2]
          Length = 933

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 8  RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          + +V D+ETTG    K D+II+  AV + +   T   +   + P  +   P   +L G++
Sbjct: 4  KYVVVDLETTGNAPKKGDKIIQFAAVVIENGKIT-EEYSSLVNPE-QSIPPFIEELTGLS 61

Query: 67 DEFLKDKPSF 76
          DE +++ P F
Sbjct: 62 DEMVENAPLF 71


>gi|197294585|ref|YP_001799126.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
 gi|171853912|emb|CAM11875.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
          Length = 1530

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 5/179 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  S  D+IIEI  V++    K    FQ  + P   K S   + +  ITD+
Sbjct: 450 YVVFDLETTGFSSTKDKIIEIAGVKIKHGKKIQE-FQALINPQ-EKLSQTIINITNITDD 507

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+ K +   +  +F +F   +N   +AHNA FD+ F+  +++ +      P  +IDT++
Sbjct: 508 MLEGKNTIDQVLPDFLNFI--ENCILVAHNATFDITFLKEKIKELGIAY-KPQPVIDTMT 564

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +++R         +         +     H AL D++  + V+IKM+   S  +   K 
Sbjct: 565 LSQRFFSEFLKYFSLKRLATVFKVKMEEHHRALSDANTTAQVFIKMIDQLSDASKNDKN 623


>gi|161870374|ref|YP_001599545.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 053442]
 gi|161595927|gb|ABX73587.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 053442]
          Length = 187

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 5/172 (2%)

Query: 74  PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK 133
           P F+ +  +  DF                   +      +         + DTL++AR  
Sbjct: 15  PPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVTDTLAMAREM 74

Query: 134 HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFF 193
            P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M      +       E    
Sbjct: 75  FPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL-----MGEAAEE 129

Query: 194 KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245
           K E K V +    +  K    R  + EL  H + +  LG+  IW +    ++
Sbjct: 130 KMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIWRKEAVPSE 181


>gi|226307078|ref|YP_002767038.1| DNA polymerase III epsilon subunit [Rhodococcus erythropolis PR4]
 gi|226186195|dbj|BAH34299.1| putative DNA polymerase III epsilon subunit [Rhodococcus
           erythropolis PR4]
          Length = 586

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 70/204 (34%), Gaps = 4/204 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG  +  D I EIGAV++             + P GR   P  ++L GIT  
Sbjct: 41  FVVVDLETTGGSADQDSITEIGAVKIRGGEVLGEM-ATLVDP-GRSIPPYIVELTGITTA 98

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P    +   F +    + A  +AHNA FD+GF+ A   R  +       +     
Sbjct: 99  MLIGAPPIERVLPAFLE--FAEGAVLVAHNAPFDIGFLKAAASRSARPWPSFRVLCTVKL 156

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             R         +      +   ++ +  H AL D+    DV   ++           + 
Sbjct: 157 ARRVLTRDEAPSVKLSALAHLFQVTTQPTHRALDDARATVDVLHGLIDRVGNQGVHSYSE 216

Query: 189 EDRFFKEEKKTVPNISLLKRDKPL 212
              +                + P 
Sbjct: 217 LVDYLPNISSHQRAKRSFAANLPR 240


>gi|172040912|ref|YP_001800626.1| putative exonuclease [Corynebacterium urealyticum DSM 7109]
 gi|171852216|emb|CAQ05192.1| putative exonuclease [Corynebacterium urealyticum DSM 7109]
          Length = 270

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 4/98 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+ETTGL+   DR+IEI  + +   S    +F   L P       E+  ++G+ D
Sbjct: 90  RCAVVDLETTGLEPATDRVIEIAVLTVEHGSIVG-SFHCLLNPEC-SIPGESSNINGLRD 147

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           + + + P+F+ +  E        N   + HN KFDVGF
Sbjct: 148 DDVANSPTFAEVAQELLPHV--LNRTLVGHNVKFDVGF 183


>gi|282881940|ref|ZP_06290585.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
 gi|281298215|gb|EFA90666.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
          Length = 298

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 26/232 (11%)

Query: 1   MIRKNKMRKI-----VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  KN  ++I     V D ETTGL S  D IIEIG +++ D    +R +   + P+  + 
Sbjct: 1   MANKNYTKQIINDYCVLDTETTGLSSYYDEIIEIGILKVRDNKIVDR-YSQLIKPDY-EI 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
                 L GIT+E +K+ P+ + + S+   F  +     I HN  FD+ F+N        
Sbjct: 59  DSFITSLTGITNEMVKEMPAINFVMSDVLSFIGK--DVIIGHNTSFDIRFLN-----AGF 111

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +    ++ +DT+  AR+  P  ++   S            ++H ++ D     ++Y  + 
Sbjct: 112 NIELDNKYMDTMQFARKLFPELKHHRLS--DLTSYLGLSNNEHRSIADCIATKELYDSIK 169

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
              ++   G +    +     K                   T+ E+DE +  
Sbjct: 170 DTMTKRGLGIQDLWVKSNHGGKGID----------IKSIHPTEVEIDEDNFF 211


>gi|85057593|ref|YP_456509.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789698|gb|ABC65430.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 1572

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 96/194 (49%), Gaps = 5/194 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D+IIEI  +++ + +K    FQ F+ P  +K +     +  ITDE
Sbjct: 481 YVVFDLETTGLSNVRDKIIEIAGIKIKNGNKIGE-FQKFIDPQ-QKLTKTITNITNITDE 538

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+ + +   +  +F      ++   +AHNA FDV F+  + + +    L+P  IIDT++
Sbjct: 539 MLQGQQTIDQVLPQFLA--FAKDCVLVAHNASFDVDFLKEKAKELKIS-LEPKPIIDTMA 595

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +++R   +     +         +     H AL D+   S+++IKM+   +      K  
Sbjct: 596 LSQRYFSNLLKYFSLKRLATVFKVKLEDHHRALADATATSEIFIKMIDQLADPTKDPKNE 655

Query: 189 EDRFFKEEKKTVPN 202
           +   F E ++ + +
Sbjct: 656 QVINFFELQEKIDH 669


>gi|228914217|ref|ZP_04077833.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228845421|gb|EEM90456.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 927

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 71/173 (41%), Gaps = 8/173 (4%)

Query: 13  DIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           D+ETTG   K   D+I +I AV + D       F  F+ P  R+  P   +L GI +  +
Sbjct: 2   DLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGIDESMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K  P F  +     +      A ++AHN  FD  F+  EL++     +   ++       
Sbjct: 60  KQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVELAQ 117

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                +    L  L K++ +       H A  D+   ++++++ +    ++  
Sbjct: 118 ILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 168


>gi|282858994|ref|ZP_06268131.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
 gi|282588223|gb|EFB93391.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
          Length = 894

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 75/236 (31%), Gaps = 15/236 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGIT 66
           +VFD ETTGLD   D IIEI A+++ +         +++    P  +K   +   L+ I 
Sbjct: 513 VVFDTETTGLDVFTDDIIEISAIKIKEGKIVGEPLDLYIYTDKPILQKLGTKENPLYEIY 572

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + L       +  +         N+  I HN  +D   ++  L+R   D +D       
Sbjct: 573 HKKLASGELLKANDALNKFIEFVDNSTLIGHNINYDYHILDNCLKRYANDCMDNHSYKYF 632

Query: 127 LSIARRK------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            S+   +             L    +  GI             S +        +V   Q
Sbjct: 633 DSLKLIRLLEPSLRSYKLEYLLERFQLEGINSHQSIDDVKATISLINYCADKAQLVVEKQ 692

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL------DEHDKTIQT 230
           ++F       +   + +     I    +        T E +        H+  +  
Sbjct: 693 MDFLNHKQVFKVANKLRAYYGEIYKEAKASLYEIYSTAEPILITSLVKAHNAFVAD 748


>gi|229490475|ref|ZP_04384316.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis
           SK121]
 gi|229322765|gb|EEN88545.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis
           SK121]
          Length = 608

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 70/204 (34%), Gaps = 4/204 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG  +  D I EIGAV++             + P GR   P  ++L GIT  
Sbjct: 63  FVVVDLETTGGSADQDSITEIGAVKIRGGEVLGEM-ATLVDP-GRSIPPYIVELTGITTA 120

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P    +   F +    + A  +AHNA FD+GF+ A   R  +       +     
Sbjct: 121 MLIGAPPIERVLPAFLE--FAEGAVLVAHNAPFDIGFLKAAASRSARPWPAFRVLCTVKL 178

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             R         +      +   ++ +  H AL D+    DV   ++           + 
Sbjct: 179 ARRVLTRDEAPSVKLSALAHLFQVTTQPTHRALDDARATVDVLHGLIDRVGNQGVHSYSE 238

Query: 189 EDRFFKEEKKTVPNISLLKRDKPL 212
              +                + P 
Sbjct: 239 LVDYLPNISSHQRAKRSFAANLPR 262


>gi|294853961|ref|ZP_06794633.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
 gi|294819616|gb|EFG36616.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
          Length = 332

 Score = 67.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 23/234 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +K +           D    +    IAHNA FD  F+    +R++    +      
Sbjct: 134 TDEMVKGRTIPRDEL----DALIAEADIIIAHNAGFDRPFL----ERLSIAFANKPWACS 185

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178
              I           L  L  + G   +             +          + +++   
Sbjct: 186 VKEIDWTVRGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 245

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
            +           F  ++               R K  +T + ++EL+   + +
Sbjct: 246 QRARMRIYAENSPFEMKDHLKARGYRWSDGKDGRPKSWWTEVGEDELEAELEYL 299


>gi|160937823|ref|ZP_02085182.1| hypothetical protein CLOBOL_02715 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439262|gb|EDP17015.1| hypothetical protein CLOBOL_02715 [Clostridium bolteae ATCC
           BAA-613]
          Length = 245

 Score = 67.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 79/217 (36%), Gaps = 15/217 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D+ETTGL+++ D+I EI A+ + D     R F   + P GR+       L GITD+
Sbjct: 5   YIALDLETTGLEARLDKITEIAALRVEDGRVEER-FVTLVNP-GRQLGERITALTGITDD 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P       +   F    N   + HN  FD  F+    +      LD  R      
Sbjct: 63  MVKDAPVIEDTIGDVVRFC--GNLPLLGHNILFDYAFLK---RAAVNSGLDFEREGIDTL 117

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
              R         N  C      +S  + H A  D+     +Y  MM    + +      
Sbjct: 118 GICRLFMPEDVKRNLTCACSFYEVSQSAAHRAQADAEAAHGLYQVMMARHGEEHPEAFAA 177

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
           +   +K +++        KR K     +    L  H 
Sbjct: 178 KPLIYKAKREQ----PATKRQKEYLHDL----LKCHR 206


>gi|319649890|ref|ZP_08004041.1| hypothetical protein HMPREF1013_00645 [Bacillus sp. 2_A_57_CT2]
 gi|317398470|gb|EFV79157.1| hypothetical protein HMPREF1013_00645 [Bacillus sp. 2_A_57_CT2]
          Length = 242

 Score = 67.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 6/173 (3%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           VFDIETTG    K D+II IGAV+++    +  +F        +  S E  +L G+++  
Sbjct: 60  VFDIETTGFYPDKGDQIISIGAVKIIKGKVSEDSFYSLARFE-KPLSNEIKELTGLSEAD 118

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+  P  S +   F +F  +     +AH+A  +  F+     ++ + P     +  +   
Sbjct: 119 LEKAPPLSEVLISFLEFVKD--MPLVAHHANHEKSFMQHSCWKLFRTPFKYRILDTSFLY 176

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
               H  S   L  LC+ Y  +I  + +H AL D+ L + ++ +++    ++ 
Sbjct: 177 RIADHNKSFWRLEDLCEFY--SIPVKDRHHALGDAKLTALLWCRLIEEVHKLG 227


>gi|138894977|ref|YP_001125430.1| hypothetical protein GTNG_1315 [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266490|gb|ABO66685.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 242

 Score = 67.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 63/177 (35%), Gaps = 9/177 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            ++ D+ETTG    + D I+ + A + ++   T  T+   + P  +        L GI  
Sbjct: 62  FVIIDMETTGFSPQQGDEILAMAAAKTVNGLVTG-TYMTLVKPE-KPIPEHISDLTGIEA 119

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +   P  +     F  F +      + ++   D+ F+   L R  +       +    
Sbjct: 120 KDVVFAPPLAEALRTFVPFISA--GVLVGYHIGHDLSFLRHVLWRHYRQKWSWRFVDMQP 177

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            ++  +HP    D    C      I    +H A  D   +  ++  ++    ++   
Sbjct: 178 IVSLVRHPCPTLDDALAC----YGIDCPRRHTADGDVEAMVKLWAILLGELRELGIE 230


>gi|226325409|ref|ZP_03800927.1| hypothetical protein COPCOM_03214 [Coprococcus comes ATCC 27758]
 gi|225206152|gb|EEG88506.1| hypothetical protein COPCOM_03214 [Coprococcus comes ATCC 27758]
          Length = 231

 Score = 67.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 73/218 (33%), Gaps = 8/218 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++      + FD+ETTGLD   + IIEIGA+++ D       F  F+ P    +     
Sbjct: 1   MLKS----YVCFDLETTGLDPLYNEIIEIGALKVRDGK-VAERFMEFIHPQEEISPMITN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                 +     +P+ + I          ++   I HN  FD  F+ +    +       
Sbjct: 56  LTGITNEMVANARPADAVISDFLE---FCEDDVLIGHNVGFDYSFMKSGASNLGLTFEKF 112

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                 ++    K   S++  +          +    +   L +  L             
Sbjct: 113 GIDTFKIAQRTLKSLPSKSLSSLCEYYQIENKAAHRAYYDALATAKLYQTLAHYFENEDP 172

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
             F  K    +  K +  T   ++LL+R      ++ +
Sbjct: 173 SLFKPKQLTYKIKKVQPATAKQVALLQRLCSQKKKVPE 210


>gi|62185003|ref|YP_219788.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3]
 gi|62148070|emb|CAH63824.1| DNA polymerase III, epsilon chain [Chlamydophila abortus S26/3]
          Length = 228

 Score = 67.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 7/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG     DRIIEI A    ++  T  +F  ++ P       EA K+HGIT   
Sbjct: 5   IFYDTETTGTQIDKDRIIEIAA---YNH-ITKESFVTYVNPE-IPIPEEASKIHGITTST 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P F   +  F +F          +N  FD   +  E +R   +PL    I      
Sbjct: 60  VISAPKFPEAYKHFCEFCGNDAVLVAHNNDSFDFPLMEKECRRHALEPLSLKTIDSLKWA 119

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            + +    +++L  L + YG        H AL D   L +V+  ++  
Sbjct: 120 QKYRPDLPKHNLQYLRQVYGFA--ENQAHRALDDVITLHNVFSALIGD 165


>gi|256058832|ref|ZP_05449048.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261322770|ref|ZP_05961967.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33]
 gi|261298750|gb|EEY02247.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33]
          Length = 332

 Score = 67.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 62/227 (27%), Gaps = 9/227 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +K +              +   A     +  F      A   +     +       
Sbjct: 134 TDEMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLERLSIAFANKPWACSVKEIDWTA 193

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                 +                               S   +  + +++    +     
Sbjct: 194 RGFEGTKLGYLIGQSGYFHSGHRAEDDCQALLAVLKGKSGKTTP-FAELLKASQRARMRI 252

Query: 186 KTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
                 F  ++               R K  +T + ++EL+   + +
Sbjct: 253 YAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 299


>gi|256015766|ref|YP_003105775.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
 gi|255998426|gb|ACU50113.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
          Length = 332

 Score = 67.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 23/234 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +K +           D    +    IAHNA FD  F+    +R++    +      
Sbjct: 134 TDEMVKGRTIPRDEL----DALIAEADIIIAHNAGFDRPFL----ERLSIAFANKPWACS 185

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178
              I           L  L  + G   +             +          + +++   
Sbjct: 186 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 245

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
            +           F  ++               R K  +T + ++EL+   + +
Sbjct: 246 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 299


>gi|254700203|ref|ZP_05162031.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261750696|ref|ZP_05994405.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5
           str. 513]
 gi|261740449|gb|EEY28375.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5
           str. 513]
          Length = 332

 Score = 67.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 23/234 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +K +           D    +    IAHNA FD  F+    +R++    +      
Sbjct: 134 TDEMVKGRTIPRDEL----DALIAEADIIIAHNAGFDRPFL----ERLSIAFANKPWACS 185

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178
              I           L  L  + G   +             +          + +++   
Sbjct: 186 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 245

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
            +           F  ++               R K  +T + ++EL+   + +
Sbjct: 246 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 299


>gi|268679463|ref|YP_003303894.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum
          deleyianum DSM 6946]
 gi|268617494|gb|ACZ11859.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum
          deleyianum DSM 6946]
          Length = 203

 Score = 67.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50
          +VFD ETTGL+ K D I+ IGAV++  +    +  F++F+ P
Sbjct: 32 VVFDTETTGLNPKKDEILSIGAVKVRGNKILMSEKFELFVKP 73


>gi|225686761|ref|YP_002734733.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457]
 gi|256262103|ref|ZP_05464635.1| exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|225642866|gb|ACO02779.1| Exonuclease RNase T and DNA polymerase III [Brucella melitensis
           ATCC 23457]
 gi|263091793|gb|EEZ16124.1| exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|326411169|gb|ADZ68233.1| DNA polymerase III subunit epsilon [Brucella melitensis M28]
 gi|326554460|gb|ADZ89099.1| DNA polymerase III subunit epsilon [Brucella melitensis M5-90]
          Length = 332

 Score = 67.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 23/234 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +K +           D    +    IAHNA FD  F+    +R++    +      
Sbjct: 134 TDEMVKGRTIPRDEL----DALIAEADIIIAHNAGFDRPFL----ERLSIAFANKPWACS 185

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178
              I           L  L  + G   +             +          + +++   
Sbjct: 186 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 245

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
            +           F  ++               R K  +T + ++EL+   + +
Sbjct: 246 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 299


>gi|23500730|ref|NP_700170.1| DNA polymerase III subunit epsilon [Brucella suis 1330]
 gi|161621054|ref|YP_001594940.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365]
 gi|254703325|ref|ZP_05165153.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|260567746|ref|ZP_05838215.1| exonuclease [Brucella suis bv. 4 str. 40]
 gi|261753952|ref|ZP_05997661.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
 gi|23464383|gb|AAN34175.1| exonuclease, putative [Brucella suis 1330]
 gi|161337865|gb|ABX64169.1| Exonuclease RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|260154411|gb|EEW89492.1| exonuclease [Brucella suis bv. 4 str. 40]
 gi|261743705|gb|EEY31631.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
          Length = 332

 Score = 67.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 23/234 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +K +           D    +    IAHNA FD  F+    +R++    +      
Sbjct: 134 TDEMVKGRTIPRDEL----DALIAEADIIIAHNAGFDRPFL----ERLSIAFANKPWACS 185

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178
              I           L  L  + G   +             +          + +++   
Sbjct: 186 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 245

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
            +           F  ++               R K  +T + ++EL+   + +
Sbjct: 246 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 299


>gi|62317837|ref|YP_223690.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str.
           9-941]
 gi|83269816|ref|YP_419107.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar
           Abortus 2308]
 gi|148558112|ref|YP_001257920.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840]
 gi|189023090|ref|YP_001932831.1| DNA polymerase III subunit epsilon [Brucella abortus S19]
 gi|254690675|ref|ZP_05153929.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|254696020|ref|ZP_05157848.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|254699129|ref|ZP_05160957.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254705536|ref|ZP_05167364.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|254710765|ref|ZP_05172576.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|254732573|ref|ZP_05191151.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|256029148|ref|ZP_05442762.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|256043877|ref|ZP_05446797.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111058|ref|ZP_05452120.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str.
           Ether]
 gi|256157340|ref|ZP_05455258.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|256253680|ref|ZP_05459216.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|256255857|ref|ZP_05461393.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260167759|ref|ZP_05754570.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99]
 gi|260545071|ref|ZP_05820892.1| exonuclease [Brucella abortus NCTC 8038]
 gi|260565052|ref|ZP_05835537.1| exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260756251|ref|ZP_05868599.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6
           str. 870]
 gi|260760381|ref|ZP_05872729.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4
           str. 292]
 gi|260763621|ref|ZP_05875953.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882073|ref|ZP_05893687.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9
           str. C68]
 gi|261216447|ref|ZP_05930728.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3
           str. Tulya]
 gi|261220817|ref|ZP_05935098.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94]
 gi|261312940|ref|ZP_05952137.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M163/99/10]
 gi|261318335|ref|ZP_05957532.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           B2/94]
 gi|261757195|ref|ZP_06000904.1| exonuclease [Brucella sp. F5/99]
 gi|265986133|ref|ZP_06098690.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M292/94/1]
 gi|265990297|ref|ZP_06102854.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           1 str. Rev.1]
 gi|265992595|ref|ZP_06105152.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           3 str. Ether]
 gi|265995827|ref|ZP_06108384.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M490/95/1]
 gi|297249226|ref|ZP_06932927.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|62198030|gb|AAX76329.1| hypothetical exonuclease [Brucella abortus bv. 1 str. 9-941]
 gi|82940090|emb|CAJ13133.1| Exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148369397|gb|ABQ62269.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189021664|gb|ACD74385.1| Exonuclease [Brucella abortus S19]
 gi|260098342|gb|EEW82216.1| exonuclease [Brucella abortus NCTC 8038]
 gi|260152695|gb|EEW87788.1| exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260670699|gb|EEX57639.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4
           str. 292]
 gi|260674042|gb|EEX60863.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260676359|gb|EEX63180.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6
           str. 870]
 gi|260871601|gb|EEX78670.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9
           str. C68]
 gi|260918054|gb|EEX84915.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3
           str. Tulya]
 gi|260919401|gb|EEX86054.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94]
 gi|261297558|gb|EEY01055.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           B2/94]
 gi|261301966|gb|EEY05463.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M163/99/10]
 gi|261737179|gb|EEY25175.1| exonuclease [Brucella sp. F5/99]
 gi|262550124|gb|EEZ06285.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M490/95/1]
 gi|262763465|gb|EEZ09497.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           3 str. Ether]
 gi|263000966|gb|EEZ13656.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           1 str. Rev.1]
 gi|264658330|gb|EEZ28591.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M292/94/1]
 gi|297173095|gb|EFH32459.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
          Length = 332

 Score = 67.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 23/234 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +K +           D    +    IAHNA FD  F+    +R++    +      
Sbjct: 134 TDEMVKGRTIPRDEL----DALIAEADIIIAHNAGFDRPFL----ERLSIAFANKPWACS 185

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178
              I           L  L  + G   +             +          + +++   
Sbjct: 186 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 245

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
            +           F  ++               R K  +T + ++EL+   + +
Sbjct: 246 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 299


>gi|227495535|ref|ZP_03925851.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226831082|gb|EEH63465.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 206

 Score = 67.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 3/166 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIETTGL   +D I E+ AV+         TF   + P GR+      +L GI ++ 
Sbjct: 18  VSVDIETTGLG-DSDAITELAAVKYQKGQVV-ETFSSLVNP-GRQIPVFITRLTGIDNQL 74

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F +F +   +  +AHNA+FD  F+     ++  +   P+ I      
Sbjct: 75  VADAPTLREVLPVFLEFCDFPRSVLLAHNARFDTRFLMNACAQLGLEWQFPASIDTVFFS 134

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                     +       +   I + + H AL D++   ++Y  ++
Sbjct: 135 RALLPRPQVQNHRLGTLAHHFGIKNPNAHRALADAYTCLELYKCLL 180


>gi|325279748|ref|YP_004252290.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
 gi|324311557|gb|ADY32110.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
          Length = 260

 Score = 67.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 9/192 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG++   DRI+EI  +++  +  +  +T +  + P G     EA  +HGI DE
Sbjct: 10  VFFDLETTGINIAKDRIVEISVLKVYPNGKEEQKTIR--VNP-GMHIPEEASAIHGIYDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P F  I  E   +    +      N           L+      +   + +D  +
Sbjct: 67  DVKDAPMFKHIARELAHYIEGCDLGGYNSNRFDIPLLAEEFLRAEVDFDMSKRKFVDVQT 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I  +          S    +         H A  D+    +V +  +    +       +
Sbjct: 127 IFHK----MEQRTLSAAYHFYCDKCLEDAHTAAADTMATYEVLMAQLDRYGE-KLENNID 181

Query: 189 EDRFFKEEKKTV 200
               F  + K V
Sbjct: 182 FLSKFSTQNKNV 193


>gi|258611758|ref|ZP_05711628.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
 gi|258605945|gb|EEW18553.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
          Length = 1144

 Score = 67.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 128 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 185

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F +     +   +AHNA FD+GFIN   +++  +  + + +     
Sbjct: 186 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 243

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187
                     + LN+L K++   I     H A+ D+   + +  K++    ++ N  F  
Sbjct: 244 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHD 301

Query: 188 NEDRFFKEEKKTVPNISL 205
           + + +  E          
Sbjct: 302 SLNDYMGEGDAYKRARPF 319


>gi|254247914|ref|ZP_04941235.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|124872690|gb|EAY64406.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
          Length = 212

 Score = 67.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 8/173 (4%)

Query: 4   KNKMRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            + M+ + V D ETTGL     DR  EI  + L D    +R FQ  +   GR+   + + 
Sbjct: 5   SSTMQTVAVLDFETTGLSPNLGDRATEIAVILLRDGQVVDR-FQSLMN-AGRRIPSDVVA 62

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT++ +   P  S +  E   F  +     +AHNA FD  F     +          
Sbjct: 63  LTGITNDMIATAPPASEVMKEAAAFVGK--HAVVAHNAGFDKRFWQ--SELGMLGMSADH 118

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               T+ +ARR +P +R+   S              H A++D+ +   ++ ++
Sbjct: 119 AFACTMLVARRIYPDARSHRLSSLAEMLRLPQTGRAHRAMVDAEMAGHLWCRL 171


>gi|15604982|ref|NP_219766.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76788983|ref|YP_328069.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13]
 gi|166154472|ref|YP_001654590.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu]
 gi|166155347|ref|YP_001653602.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237802684|ref|YP_002887878.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804606|ref|YP_002888760.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311062|ref|ZP_05353632.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276]
 gi|255317363|ref|ZP_05358609.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s]
 gi|255348621|ref|ZP_05380628.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70]
 gi|255503161|ref|ZP_05381551.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s]
 gi|255506839|ref|ZP_05382478.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923]
 gi|301335732|ref|ZP_07223976.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1]
 gi|3328673|gb|AAC67854.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX]
 gi|76167513|gb|AAX50521.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13]
 gi|165930460|emb|CAP03953.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu]
 gi|165931335|emb|CAP06907.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231272906|emb|CAX09817.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273918|emb|CAX10710.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           B/Jali20/OT]
 gi|289525300|emb|CBJ14776.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2]
 gi|296434850|gb|ADH17028.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150]
 gi|296435777|gb|ADH17951.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768]
 gi|296436702|gb|ADH18872.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222]
 gi|296437637|gb|ADH19798.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074]
 gi|296438570|gb|ADH20723.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023]
 gi|297140136|gb|ADH96894.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301]
 gi|297748391|gb|ADI50937.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-EC]
 gi|297749271|gb|ADI51949.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-LC]
          Length = 232

 Score = 67.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 66/168 (39%), Gaps = 7/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG     DRI+E+ A        T+ +FQ  + P       EA K+HGIT   
Sbjct: 5   IFYDTETTGTQIDKDRIVELAAY----NGTTSESFQTLVNPE-IPIPAEATKIHGITTAE 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P F   + +F +F    N     +N  FD   +  E +R          I      
Sbjct: 60  VADAPRFPEAYQKFIEFCGTDNILVAHNNNAFDYPLLVRECRRHGLSEPQLRTIDSLKWA 119

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            + +    ++ L  L + YG        H AL D   L  V+  ++  
Sbjct: 120 KKYRTDLPQHSLQYLRQVYGFE--ENQAHRALDDVITLYRVFSALVGD 165


>gi|212715911|ref|ZP_03324039.1| hypothetical protein BIFCAT_00820 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661278|gb|EEB21853.1| hypothetical protein BIFCAT_00820 [Bifidobacterium catenulatum DSM
           16992]
          Length = 196

 Score = 67.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 5/177 (2%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            IV D ETTGL   K  R+IEIGAV++ +    +  F   + P           L GI D
Sbjct: 22  FIVIDTETTGLSVRKGARLIEIGAVKIHNDELVDE-FDQLINP-FEHIPSRITGLTGIDD 79

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDT 126
             L  KP    +  EF  +     A  +AHNA FD+ F++  +Q          +     
Sbjct: 80  GMLLGKPDVREVMDEFARW-CSDTAVVMAHNASFDMSFLDNAVQLAYADRDARFAHHFVD 138

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                R+    +             I+   +H AL D+     +Y  M      +  
Sbjct: 139 TLDLSRRLHPEKRTHKVSTLIVDYHIADMEEHRALSDAKQEWMLYRAMRDEAELLGM 195


>gi|134292561|ref|YP_001116297.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
 gi|134135718|gb|ABO56832.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 205

 Score = 67.7 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 8/177 (4%)

Query: 7   MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+ + V D ETTGL     DR  EI  + L D    +R +Q  +   GR+   + + L G
Sbjct: 1   MQTVAVLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLMN-AGRRIPSDVVALTG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E +   P  S +  E   F        +AHNA FD  F     +  +          
Sbjct: 59  ITNEMIATAPPVSKVMKEAAAFVGS--HPVVAHNAGFDKRFWQ--AELGSLGVAADHPFA 114

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            T+ +ARR +P +R+   S              H A++D+ + S ++ +M     + 
Sbjct: 115 CTMLVARRLYPHARSHRLSSLADLLRLPQAGRAHRAMVDAEIASHLWCRMQRDIGET 171


>gi|300087648|ref|YP_003758170.1| DNA polymerase III subunit epsilon [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527381|gb|ADJ25849.1| DNA polymerase III, epsilon subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 260

 Score = 67.7 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 65/171 (38%), Gaps = 6/171 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL+   DRI+EI  V+LL    T  +    + P G      A  +HGITD+ 
Sbjct: 11  VFFDLETTGLNPLKDRIVEITLVKLLPDG-TEESRSRLIDP-GIPIPETATAIHGITDDR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +PSF+ I   F DF    +                   +          RIIDT  I
Sbjct: 69  VAGQPSFNRIAKSFRDFLEGCDLCGFNIKKFDIPMLEAEFRRAGVDFSRAGRRIIDTQVI 128

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             + HP       SL           + H +  D+   +++    +     
Sbjct: 129 FHKFHPRGLEAAYSLY----CGKQLANLHSSDADARACAEILSAQLAAHES 175


>gi|237817379|ref|ZP_04596371.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A]
 gi|237788192|gb|EEP62408.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A]
          Length = 379

 Score = 67.7 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 23/234 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 121 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 180

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +K +           D    +    IAHNA FD  F+    +R++    +      
Sbjct: 181 TDEMVKGRTIPRDEL----DALIAEADIIIAHNAGFDRPFL----ERLSIAFANKPWACS 232

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178
              I           L  L  + G   +             +          + +++   
Sbjct: 233 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 292

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
            +           F  ++               R K  +T + ++EL+   + +
Sbjct: 293 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 346


>gi|76789273|ref|YP_328359.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13]
 gi|255311354|ref|ZP_05353924.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276]
 gi|255317655|ref|ZP_05358901.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s]
 gi|255348913|ref|ZP_05380920.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70]
 gi|255503453|ref|ZP_05381843.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s]
 gi|255507132|ref|ZP_05382771.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923]
 gi|76167803|gb|AAX50811.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13]
 gi|289525581|emb|CBJ15059.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2]
 gi|296435141|gb|ADH17319.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150]
 gi|296436069|gb|ADH18243.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768]
 gi|296436997|gb|ADH19167.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222]
 gi|296437930|gb|ADH20091.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074]
 gi|296438861|gb|ADH21014.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023]
 gi|297140430|gb|ADH97188.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301]
          Length = 250

 Score = 67.7 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 4/182 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+    +  +  D ETTGLD K DR+IE  A+        +   +  + P  R  S E+ 
Sbjct: 1   MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSV-EFLIHPE-RAVSAESQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K+H I+D  L+DKP F  +FS    FF E++     H             +         
Sbjct: 59  KIHKISDAMLRDKPKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLGETLLPKH 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +IDTL +A+    S  N L +L + + +       H A+ D  +   V+  +      
Sbjct: 119 HYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGN--HRAMKDVEMNVKVFKHLTKRFRT 176

Query: 181 IN 182
           ++
Sbjct: 177 LS 178


>gi|237802965|ref|YP_002888159.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231274199|emb|CAX10993.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 250

 Score = 67.7 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 4/182 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+    +  +  D ETTGLD K DR+IE  A+        +   +  + P  R  S E+ 
Sbjct: 1   MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSV-EFLIHPE-RAVSAESQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K+H I+D  L+DKP F  +FS    FF E++     H             +         
Sbjct: 59  KIHKISDAMLRDKPKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLGETLLPKH 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +IDTL +A+    S  N L +L + + +       H A+ D  +   V+  +      
Sbjct: 119 HYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGN--HRAMKDVEMNVKVFKHLTKRFRT 176

Query: 181 IN 182
           ++
Sbjct: 177 LS 178


>gi|311740325|ref|ZP_07714155.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311304608|gb|EFQ80681.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 229

 Score = 67.7 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 7/170 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTG + + DRIIE+      +  +    +   + P+G++   +   +HGIT+ 
Sbjct: 31  FAVIDTETTGFNKRYDRIIELAVARFDESFRLVDQWHTLINPDGKQI--KNSHIHGITNA 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127
            +   P+F  +++EF    +      +AHNA FD   I AE +RI  D  D     +DT+
Sbjct: 89  DVAHAPTFPEVYTEFAARVDG--MVLMAHNAPFDSKMILAEAERITPDGEDVYFPFVDTI 146

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           ++A++        L++L    G+   +   H A+ D+     +  K+   
Sbjct: 147 ALAKQMVSLRSYKLSALLDHVGL--HNPQSHAAIADATATGQMLNKLFGK 194


>gi|169832144|ref|YP_001718126.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638988|gb|ACA60494.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 247

 Score = 67.7 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59
           +  +K+R +V D ETTG +    D +I +GAV + +      + F   + P GR   P  
Sbjct: 48  MPLSKLRFVVLDTETTGFEPAGGDEVIALGAVVVKNGRPRPEQVFHRLVNP-GRSIPPLV 106

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
             L GI+DE +  +    ++   F +F     
Sbjct: 107 TALTGISDEAVAGEDDLVAVLPCFLEFLGNDC 138


>gi|330469366|ref|YP_004407109.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
           AB-18-032]
 gi|328812337|gb|AEB46509.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
           AB-18-032]
          Length = 584

 Score = 67.7 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 71/216 (32%), Gaps = 9/216 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       I EIGAV++    +        + P G    P    L GIT+ 
Sbjct: 32  FVVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITEA 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   PS   +   F +F ++  A  +AHNA +DVGF+ A   R      +P  +     
Sbjct: 90  MLLPAPSIEQVLPSFLEFVSD--AVLVAHNAPYDVGFLKAACARHGYRWPNPRVLDTAAL 147

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             R        +            +    H AL D+    DV   ++             
Sbjct: 148 ARRVLLRDEVPNRKLGTLAAYFRAATTPTHRALDDARATVDVLHGLIGRLGGHRVDTIGE 207

Query: 189 EDRFFKEEKKTVPNISLL-----KRDKPLFTRITKE 219
              F +    T      L     +       R   +
Sbjct: 208 AIEFARAVTPTQRRKRHLADGLPRSPGVYIFRAADD 243


>gi|17988635|ref|NP_541268.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           16M]
 gi|17984439|gb|AAL53532.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str.
           16M]
          Length = 272

 Score = 67.7 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 23/234 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 14  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 73

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +K +           D    +    IAHNA FD  F+    +R++    +      
Sbjct: 74  TDEMVKGRTIPRDEL----DALIAEADIIIAHNAGFDRPFL----ERLSIAFANKPWACS 125

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178
              I           L  L  + G   +             +          + +++   
Sbjct: 126 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
            +           F  ++               R K  +T + ++EL+   + +
Sbjct: 186 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 239


>gi|329942731|ref|ZP_08291510.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Chlamydophila psittaci Cal10]
 gi|332287328|ref|YP_004422229.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
 gi|313847912|emb|CBY16907.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci RD1]
 gi|325506611|gb|ADZ18249.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
 gi|328814991|gb|EGF84980.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Chlamydophila psittaci Cal10]
 gi|328914571|gb|AEB55404.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC]
          Length = 228

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 7/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG     DRIIEI A    ++  T  +F  ++ P       EA K+HGIT   
Sbjct: 5   IFYDTETTGTQIDKDRIIEIAA---YNHK-TKESFVTYVNPE-IPIPEEASKIHGITTST 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P F   +  F DF   +      +N  FD   +  E +R    PL    I      
Sbjct: 60  VISAPKFPEAYKHFCDFCGNEAVLVAHNNDSFDFPLLEKECRRHALPPLSLKTIDSLKWA 119

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            + +    +++L  L + YG        H AL D   L +V+  ++  
Sbjct: 120 QKYRPDLPKHNLQYLRQVYGFA--ENQAHRALDDVITLHNVFSALIGD 165


>gi|260662302|ref|ZP_05863198.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus fermentum 28-3-CHN]
 gi|260553685|gb|EEX26577.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus fermentum 28-3-CHN]
          Length = 1447

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL +  DRII++ AV++ D  +    F  F+ P G   S +   L  ITD+
Sbjct: 427 YVIFDIETTGLSAIYDRIIQVSAVKMQDG-EVLDHFDQFIDP-GFHLSEQTTALTSITDD 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   +   +   F D      +    HN  FD+GF+N   +R     +    I     
Sbjct: 485 MVQGSKTEEEVLKLFDD--FADGSLLAGHNVSFDMGFMNVAYERHGMGQIKQPVIDTLPL 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                       LN+L KR+ +++ H   H A  DS     +    +    +
Sbjct: 543 ARFLHPDFRGYRLNTLSKRFKVSLEH--HHLASYDSEATGHLLAIFLKDAEE 592


>gi|227514713|ref|ZP_03944762.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227086917|gb|EEI22229.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 1447

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL +  DRII++ AV++ D  +    F  F+ P G   S +   L  ITD+
Sbjct: 427 YVIFDIETTGLSAIYDRIIQVSAVKMQDG-EVLDHFDQFIDP-GFHLSEQTTALTSITDD 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   +   +   F D      +    HN  FD+GF+N   +R     +    I     
Sbjct: 485 MVQGSKTEEEVLKLFDD--FADGSLLAGHNVSFDMGFMNVAYERHGMGQIKQPVIDTLPL 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                       LN+L KR+ +++ H   H A  DS     +    +    +
Sbjct: 543 ARFLHPDFRGYRLNTLSKRFKVSLEH--HHLASYDSEATGHLLAIFLKDAEE 592


>gi|184155198|ref|YP_001843538.1| DNA polymerase III PolC [Lactobacillus fermentum IFO 3956]
 gi|183226542|dbj|BAG27058.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
           fermentum IFO 3956]
          Length = 1447

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL +  DRII++ AV++ D  +    F  F+ P G   S +   L  ITD+
Sbjct: 427 YVIFDIETTGLSAIYDRIIQVSAVKMQDG-EVLDHFDQFIDP-GFHLSEQTTALTSITDD 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   +   +   F D      +    HN  FD+GF+N   +R     +    I     
Sbjct: 485 MVQGSKTEEEVLKLFDD--FADGSLLAGHNVSFDMGFMNVAYERHGMGQIKQPVIDTLPL 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                       LN+L KR+ +++ H   H A  DS     +    +    +
Sbjct: 543 ARFLHPDFRGYRLNTLSKRFKVSLEH--HHLASYDSEATGHLLAIFLKDAEE 592


>gi|15896683|ref|NP_350032.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
           824]
 gi|15026532|gb|AAK81372.1|AE007841_7 DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
           824]
 gi|325510847|gb|ADZ22483.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum EA
           2018]
          Length = 1452

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 81/206 (39%), Gaps = 7/206 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG   K ++I EIG ++  +    ++ F +F+ P  +      +++  ITD+
Sbjct: 428 YCVLDLETTGFSPKTEKITEIGIMKYENGKVIDK-FSLFVNPE-KPIPARVVEVTNITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+  +   +F +  +F     +  +AHNA FD+GF+    + +  +         +L+
Sbjct: 486 MVKNAETIDKVFPKMLEFIKG--SVLVAHNASFDIGFLKHNAKVLGYEFDFTYLDTLSLA 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
            A      S            + I     H AL D      V+  M+    +       +
Sbjct: 544 QAVFPQYKSYKL---GRIAKNLGIKVEVAHRALDDVDTTVKVFKVMLEILKERGAKTLED 600

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
            D +  +E+        L+    +  
Sbjct: 601 VDIYSVDEESKKEEYKKLRTYHAIIL 626


>gi|328881521|emb|CCA54760.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC
           10712]
          Length = 330

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 75/199 (37%), Gaps = 8/199 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+      L         +   + P      P  + +HG+T +
Sbjct: 21  YAVVDVETTGL-ARDDRIVSAAVYRLDAQGNVEDHWYTLVNPER---DPGPVWIHGLTTD 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  I +EF    +      +AHNA FD   I  E  R         R+     
Sbjct: 77  VLAGAPLFPEIAAEFAARLDG--RVLVAHNAMFDWQMIAREYARAESAAPVRQRLCTIAL 134

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                 P   + L SL   +G+       H AL D+ +L++ +   +   ++ N      
Sbjct: 135 AKELSLPLPNHKLESLAAHFGVVQQRA--HNALDDARVLAEAFRPSLHAAAERNVRLPLL 192

Query: 189 EDRFFKEEKKTVPNISLLK 207
           E R   E   +     + +
Sbjct: 193 ECRPLTEWASSSERPRIGQ 211


>gi|307565674|ref|ZP_07628146.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
 gi|307345619|gb|EFN90984.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
          Length = 892

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD ETTGLD  ND IIEI A+++ +  +  +T  +++  +        +K + + + +
Sbjct: 511 VVFDTETTGLDVFNDDIIEISAIKIRNGKQIGKTLDLYIYTDKTILPKLGIKDNPLYEIY 570

Query: 70  L---KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                     +   +         N+  +AHN  +D   ++  L+R   D L+    
Sbjct: 571 NEKLNSGELINIKEALNEFLKFADNSILMAHNINYDYHILDNCLRRYTGDNLNNYNF 627


>gi|308234672|ref|ZP_07665409.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis ATCC
           14018]
 gi|311114561|ref|YP_003985782.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Gardnerella vaginalis ATCC 14019]
 gi|310946055|gb|ADP38759.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Gardnerella vaginalis ATCC 14019]
          Length = 359

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           I K     +V D ETTGL+SK D+IIEIGAV+ +D       FQ  + 
Sbjct: 171 IGKTSKNFVVIDCETTGLNSKVDKIIEIGAVKFIDGKI--EEFQKLIN 216


>gi|225629458|ref|ZP_03787491.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo]
 gi|225615954|gb|EEH13003.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo]
          Length = 379

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 62/227 (27%), Gaps = 9/227 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 121 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 180

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +K +              +   A     +  F      A   +     +       
Sbjct: 181 TDEMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLERLSIAFANKPWACSVKEIDWTA 240

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                 +                               S   +  + +++    +     
Sbjct: 241 RGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTP-FAELLKASQRARMRI 299

Query: 186 KTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
                 F  ++               R K  +T + ++EL+   + +
Sbjct: 300 YAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 346


>gi|13959345|sp|Q9CDT7|DPO3_LACLA RecName: Full=DNA polymerase III polC-type; Short=PolIII
          Length = 1638

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 7/190 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +  +  F  F+ P  R +           D 
Sbjct: 596 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINPGYRLSEFTTELTGITDDH 654

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
               KP +  +          +    +AHNA FDVGF+N    R     +       ++ 
Sbjct: 655 VKNAKPLYEVLTKFQK---FCEGTILVAHNATFDVGFMNMNYSRNGLPIITQPVVDTLEF 711

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                 +         +   + G+   H +   A     LL  V+++ +   +       
Sbjct: 712 ARNLYPEMKRFGLGQLTKKFQIGLEHHHMANFDAEATGRLLF-VFLEELRTRNTGWTSLL 770

Query: 187 TNEDRFFKEE 196
              D+   E+
Sbjct: 771 ELNDKLVSED 780


>gi|15643262|ref|NP_228306.1| DNA polymerase III, epsilon subunit, putative [Thermotoga maritima
           MSB8]
 gi|4981007|gb|AAD35581.1|AE001726_15 DNA polymerase III, epsilon subunit, putative [Thermotoga maritima
           MSB8]
          Length = 189

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           V D ETTG D    DRI+EI AV +       N+ F   + P  R       K+HGI++ 
Sbjct: 13  VVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNPRIR-IPALIQKVHGISNM 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
            + + P   +++  F D+       +   N     
Sbjct: 72  DIVEAPDMDTVYDLFRDYVKGTVLVFHNANFDLTF 106


>gi|331701344|ref|YP_004398303.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
 gi|329128687|gb|AEB73240.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
          Length = 1439

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 6/171 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD ETTGL +  DR+IE+ AV++ + +  ++ F+ F+ P G   S     L  ITDE
Sbjct: 420 YVVFDTETTGLSAIYDRVIELSAVKMQNSNVIDQ-FEEFIDP-GFHLSERTTNLTSITDE 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    S   +F  F +F  +  A  + HN  FD+GF+N    R     +    I     
Sbjct: 478 MVHGSKSEEEVFKLFREFCGD--AIVVGHNVTFDMGFMNTGYVRHGMHEMQNPIIDTLTL 535

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                       LN+L K++ +++ H   H A+ D+     +    +    
Sbjct: 536 ARFLYPNLRGYRLNTLAKKFDVSLEH--HHRAIYDAETTGHLNYLFLKDAE 584


>gi|291537849|emb|CBL10960.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis XB6B4]
          Length = 226

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 7/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +++D+ETTG+ S  D +IEI AV++ +    +  F   + P GR     A  ++ I+D+
Sbjct: 17  YVLYDLETTGISSLYDEVIEISAVKVRNGKIVDE-FSELVNP-GRPIPYAASSVNNISDK 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
            +++  SF  +  EF       +     HN   FD+ F+  + ++     L    I    
Sbjct: 75  MVENARSFEKVLPEFLA--FAGDDVLAGHNIAGFDMKFLYRDCEKYFGQTLTNDYIDTLA 132

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                        L+ L + YGI+      H AL D  +   V+  M
Sbjct: 133 IAKLCFPEWKHRRLSDLAEHYGISTKGA--HRALADCRMNQQVFELM 177


>gi|291537711|emb|CBL10823.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis M50/1]
          Length = 226

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 7/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +++D+ETTG+ S  D +IEI AV++ +    +  F   + P GR     A  ++ I+D+
Sbjct: 17  YVLYDLETTGISSLYDEVIEISAVKVRNGKIVDE-FSELVNP-GRPIPYAASSVNNISDK 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
            +++  SF  +  EF       +     HN   FD+ F+  + ++     L    I    
Sbjct: 75  MVENARSFEKVLPEFLA--FAGDDVLAGHNIAGFDMKFLYRDCEKYFGQTLTNDYIDTLA 132

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                        L+ L + YGI+      H AL D  +   V+  M
Sbjct: 133 IAKLCFPEWKHRRLSDLAEHYGISTKGA--HRALADCRMNQQVFELM 177


>gi|315038988|ref|YP_004032556.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112]
 gi|325957414|ref|YP_004292826.1| DNA polymerase III [Lactobacillus acidophilus 30SC]
 gi|312277121|gb|ADQ59761.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112]
 gi|325333979|gb|ADZ07887.1| DNA polymerase III [Lactobacillus acidophilus 30SC]
 gi|327184122|gb|AEA32569.1| DNA polymerase III [Lactobacillus amylovorus GRL 1118]
          Length = 318

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 63/199 (31%), Gaps = 3/199 (1%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIETTGL    DRI E+GAV++ +    ++ +   +        P  +       E   
Sbjct: 36  LDIETTGLSPYRDRITELGAVKVRNGQIVDQ-YTNLIKFPKNNKVPAFITKLNGITEEQI 94

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                 +  +         +   I +N  FD+ F+    Q+     L+   +        
Sbjct: 95  VNEGIPAEQAIKEFREFIDDDIIIGYNVNFDLNFLYDLSQKYKLPILNNDYVDVLRLARA 154

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191
                  N L    +R GI      +H  L DS     VY       +        N+ +
Sbjct: 155 YYPRERHNRLIDCMQRAGIA--QVEEHHGLADSLDTIKVYNDFSAHFTDDLLEATRNKIK 212

Query: 192 FFKEEKKTVPNISLLKRDK 210
                   V  I L  R+ 
Sbjct: 213 NVDLTGDDVDYIDLGFRNP 231


>gi|299140892|ref|ZP_07034030.1| exonuclease [Prevotella oris C735]
 gi|298577858|gb|EFI49726.1| exonuclease [Prevotella oris C735]
          Length = 286

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 6/198 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGLD  NDRII++  +++       R     + P G+        L GI DE 
Sbjct: 10  VVFDLETTGLDIVNDRIIQLSFIKVCPDGTEERGDH-LINP-GKHIPDMVSDLTGIDDEK 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD PSF  + +   + F   +      N           L+          R+ID  +I
Sbjct: 68  VKDAPSFKQLSATLAEKFKGCDFAGFNSNRFDVPMLAEEFLRAGIDFDFSKCRLIDAQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          +    +           A          Y  ++      +   ++  
Sbjct: 128 FHK----MEKRNLAAAYEFYCGRKMDEDFEAHRADQDTEATYRVLLGQLDMYSADKQSET 183

Query: 190 DRFFKEEKKTVPNISLLK 207
           +R    +   + + S   
Sbjct: 184 ERILPNDMDYLADFSKQN 201


>gi|237804887|ref|YP_002889041.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273187|emb|CAX10100.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 250

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 4/182 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+    +  +  D ETTGLD K DR+IE  A+        +   +  + P  R  S E+ 
Sbjct: 1   MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSV-EFLIHPE-RAVSAESQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K+H I+D  L+DKP F  +FS    FF E++     H             +         
Sbjct: 59  KIHKISDAMLRDKPKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLGETLLPKH 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +IDTL +A+    S  N L +L + + +       H A+ D  +   V+  +      
Sbjct: 119 HYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGN--HRAMKDVEMNVKVFKHLTKRFRT 176

Query: 181 IN 182
           ++
Sbjct: 177 LS 178


>gi|182439459|ref|YP_001827178.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780122|ref|ZP_08239387.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|178467975|dbj|BAG22495.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326660455|gb|EGE45301.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 341

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 79/211 (37%), Gaps = 10/211 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L         +   + P      P  + +HG+T +
Sbjct: 19  YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNPER---DPGPVWIHGLTSD 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  +  E      +     +AHNA FD   I  E  R +       R+     
Sbjct: 75  VLEGAPLFPEVAEELSARLAD--RVLVAHNAAFDWSMIAREYARASVVAPVEQRLCTIAL 132

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
               + P   + L SL   +G+       H AL D+ +L++ +   +   ++        
Sbjct: 133 AKELRLPLPNHKLASLAAHFGVVQQRA--HHALDDARVLAEAFRPSLHAAARGGVRLPLL 190

Query: 189 EDRFFKEEKKT--VPNISLLKRDKPLFTRIT 217
           E R   E   +   P +      +P   R +
Sbjct: 191 ECRPLTEWSDSPVTPRVGYQPSRQPNSWRPS 221


>gi|319936397|ref|ZP_08010813.1| DNA polymerase III [Coprobacillus sp. 29_1]
 gi|319808512|gb|EFW05064.1| DNA polymerase III [Coprobacillus sp. 29_1]
          Length = 187

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 11/177 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL   +D+IIE+G +++ +    ++ +   + P  R+ SP   KL GIT++
Sbjct: 22  YCVIDLETTGLSWADDKIIEVGILKIRNQQIIDK-YSQLINPE-REVSPFITKLTGITND 79

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P+   I  + + F  +     + HN  FD+ F+  +     ++       +DTL 
Sbjct: 80  MLLGMPTLDEIRDDVFSFIGD--DILLGHNTSFDLNFVANQFHIDIEN-----EYMDTLQ 132

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             R+ +P  ++   +            ++H ++ D     ++Y K+ +         
Sbjct: 133 FCRKVYPHMKHHRLT--DMVQYLNLSNNEHRSIADCIATYELYEKIKIEIEDKKISL 187


>gi|315302974|ref|ZP_07873694.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           ivanovii FSL F6-596]
 gi|313628654|gb|EFR97067.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           ivanovii FSL F6-596]
          Length = 1452

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 436 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 493

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F +     +   +AHNA FD+GFIN   +++     + + +     
Sbjct: 494 MVKGSDPIDVVLQRFKE--WSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLEL 551

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L K++   I     H A+ D+   + +  K++    +++     +
Sbjct: 552 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDYHD 609

Query: 189 EDRFFKEEKKTVPNISLL 206
               +  E          
Sbjct: 610 SLNDYMGEGDAYKRARPF 627


>gi|288928331|ref|ZP_06422178.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331165|gb|EFC69749.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108]
          Length = 284

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 70/182 (38%), Gaps = 4/182 (2%)

Query: 2   IRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  R  +VFD+ETTGLD  NDRII+I  +++    K  R   + + P  R    E  
Sbjct: 1   MKLNLTRPLVVFDLETTGLDLVNDRIIQISYIKIYPDGKEERE-NLLVYPQ-RPIPDEVS 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GIT + ++D P+F  +     + F   +      N           L+         
Sbjct: 59  ELTGITTDLVEDAPTFEELAPRLNEVFKGCDFAGFNSNHFDIPMLAEEFLRAEIDFDFSS 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +R+ID  +I  +    +                    H A  D+     V +  +   S+
Sbjct: 119 ARLIDAQTIFHKMEKRNLAAAYKFY-CGRKMEDDFEAHRADQDAEATYRVLLGELERYSE 177

Query: 181 IN 182
            N
Sbjct: 178 AN 179


>gi|281492785|ref|YP_003354765.1| DNA polymerase III subunit alpha [Lactococcus lactis subsp. lactis
           KF147]
 gi|281376437|gb|ADA65923.1| DNA polymerase III, alpha subunit [Lactococcus lactis subsp. lactis
           KF147]
          Length = 1638

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 7/190 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +  +  F  F+ P  R +           D 
Sbjct: 596 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINPGYRLSEFTTELTGITDDH 654

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
               KP +  +          +    +AHNA FDVGF+N    R     +       ++ 
Sbjct: 655 VKNAKPLYEVLTKFQK---FCEGTILVAHNATFDVGFMNMNYSRNGLPIITQPVVDTLEF 711

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                 +         +   + G+   H +   A     LL  V+++ +   +       
Sbjct: 712 ARNLYPEMKRFGLGQLTKKFQIGLEHHHMANFDAEATGRLLF-VFLEELRTRNTGWTSLL 770

Query: 187 TNEDRFFKEE 196
              D+   E+
Sbjct: 771 ELNDKLVSED 780


>gi|281355248|ref|ZP_06241742.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
           BAA-548]
 gi|281318128|gb|EFB02148.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
           BAA-548]
          Length = 185

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 4/97 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           +FD+ETTG+    DRI+E+ AV +      +R FQ  + P G +   +A+ +H ITD+ +
Sbjct: 11  IFDVETTGMSPVRDRIVELAAVRVDRDGSLSR-FQSLVNP-GVRIPAQAVAVHHITDDMV 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
              PSF+ +  +F +      +  +AHNA+FD+GF+ 
Sbjct: 69  AGAPSFARMGLDFLE--FASESTLVAHNARFDLGFLQ 103


>gi|315187162|gb|EFU20919.1| DNA polymerase III, epsilon subunit [Spirochaeta thermophila DSM
           6578]
          Length = 198

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 6/165 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGLD     ++EI  V+          F + + P       E  K+HGI D+ 
Sbjct: 22  VAFDLETTGLDPVRHSVVEIACVKFQGGEP-RAFFSLLVKPP-HPIPAEVTKIHGIGDQD 79

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ P   S+      F        +AHNA FD+ F+  E  R  +      R IDT  +
Sbjct: 80  VEEAPPLPSVLPMLESFVGT--HLLVAHNAPFDLSFLRIEYARCGRPYP-GFRAIDTRLL 136

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           AR   P       +   R  + I  +  H AL D+    D++  +
Sbjct: 137 ARSVLPHLGRYSLASLTRA-LDIPLQQHHRALSDAWACGDLFYAL 180


>gi|240146656|ref|ZP_04745257.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82]
 gi|257201200|gb|EEU99484.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82]
          Length = 226

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 7/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +++D+ETTG+ S  D +IEI AV++ +    +  F   + P GR     A  ++ I+D+
Sbjct: 17  YVLYDLETTGISSLYDEVIEISAVKVRNGKIVDE-FSELVNP-GRPIPYAASSVNNISDK 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
            +++  SF  +  EF       +     HN   FD+ F+  + ++     L    I    
Sbjct: 75  MVENARSFEKVLPEFLA--FAGDDVLAGHNIAGFDMKFLYRDCEKYFGQTLTNDYIDTLA 132

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                        L+ L + YGI+      H AL D  +   V+  M
Sbjct: 133 IAKLCFPEWKHRKLSDLAEHYGISTKGA--HRALADCRMNQQVFELM 177


>gi|313674131|ref|YP_004052127.1| DNA polymerase iii, epsilon subunit [Marivirga tractuosa DSM 4126]
 gi|312940829|gb|ADR20019.1| DNA polymerase III, epsilon subunit [Marivirga tractuosa DSM 4126]
          Length = 465

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 72/202 (35%), Gaps = 7/202 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG  +  +RI EI  + L D  K  + +Q  + P  R   P+   +HGI D+
Sbjct: 2   YAIVDIETTGGYAARNRICEIAII-LHDGEKVVKEYQTLINPE-RHIPPQLSAIHGINDQ 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P F        +          + N  +          +     L   ++     
Sbjct: 60  MVEDAPKFYEEAKTIHELLEGNIFVAHSVNFDY---SFVKAAFQDLGYELKLKKLCTVRL 116

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +         L ++C+  GI I    +H A  D+   ++++ +++   +  +      
Sbjct: 117 SRKIFPGLKSYSLGNICENRGIKI--NDRHRAFGDAIATAELFTQLVQHDTDNHIQKSLK 174

Query: 189 EDRFFKEEKKTVPNISLLKRDK 210
           ++       + +         +
Sbjct: 175 KNAAVVNIPENLERTVFEDLPE 196


>gi|269115238|ref|YP_003303001.1| DNA polymerase III polC-type [Mycoplasma hominis]
 gi|268322863|emb|CAX37598.1| DNA polymerase III polC-type [Mycoplasma hominis ATCC 23114]
          Length = 1437

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 84/200 (42%), Gaps = 4/200 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL  + D IIE GA  + + + T +  Q FL    R+ S   ++   I +E
Sbjct: 407 YVVFDLETTGLSPRLDDIIEFGATIVKNNTITQKI-QFFLQ-TKRELSAFTVESSHINNE 464

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK+  +      + ++   +     +AHNA FD+ F   +  ++  D      +     
Sbjct: 465 MLKNGYAQEEGIKKIYEILKD--KIAVAHNANFDINFCKEKFSKLGLDNSKIFGLDTLAL 522

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R+ L  + KR+ I       H    D+++L+ ++IKM+   ++      + 
Sbjct: 523 SYFLNPDEFRHSLGYVAKRFNIIYDTTVAHRGDYDANVLAKIWIKMIDKLAKDYNILNSQ 582

Query: 189 EDRFFKEEKKTVPNISLLKR 208
           +      +K      +   R
Sbjct: 583 DLNNVDSQKILSHKFTYETR 602


>gi|311746711|ref|ZP_07720496.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1]
 gi|126578388|gb|EAZ82552.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1]
          Length = 456

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 66/187 (35%), Gaps = 7/187 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   + DIETTG  +    I EI A+ + D  K    F+  + P  +        L GI 
Sbjct: 1   MEFAIVDIETTGGAASTCGITEI-AILIHDGEKVIEEFESLINPE-QDIPTYITGLTGID 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + D P+F  +  + WD  + +     + N  +                      + T
Sbjct: 59  NSMVSDAPTFEELSDKLWDLLHGRVFVAHSVNFDYGFVRAC----FNAIGREFKVDKLCT 114

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           + +AR+  P   +            I   ++H A+ D+   + ++ +M+   SQ  F   
Sbjct: 115 VRLARKIIPGLSSYSL-GRICETQKIPILARHRAMGDARATAILFDQMLKKDSQTVFQAL 173

Query: 187 TNEDRFF 193
                  
Sbjct: 174 KKNSGEA 180


>gi|15674106|ref|NP_268281.1| DNA polymerase III PolC [Lactococcus lactis subsp. lactis Il1403]
 gi|12725180|gb|AAK06222.1|AE006440_8 DNA polymerase III, alpha chain [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 1658

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 7/190 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +  +  F  F+ P  R +           D 
Sbjct: 616 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINPGYRLSEFTTELTGITDDH 674

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
               KP +  +          +    +AHNA FDVGF+N    R     +       ++ 
Sbjct: 675 VKNAKPLYEVLTKFQK---FCEGTILVAHNATFDVGFMNMNYSRNGLPIITQPVVDTLEF 731

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                 +         +   + G+   H +   A     LL  V+++ +   +       
Sbjct: 732 ARNLYPEMKRFGLGQLTKKFQIGLEHHHMANFDAEATGRLLF-VFLEELRTRNTGWTSLL 790

Query: 187 TNEDRFFKEE 196
              D+   E+
Sbjct: 791 ELNDKLVSED 800


>gi|302546442|ref|ZP_07298784.1| putative DNA polymerase III epsilon subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464060|gb|EFL27153.1| putative DNA polymerase III epsilon subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 335

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 8/177 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+     +L         +   + P      P  + +HG+T E
Sbjct: 26  YAVVDVETTGL-ARDDRIVSAAVYQLDARGAVQDRWYTLVNPQR---DPGPVWIHGLTRE 81

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P F  I + F +  +      +AHNA FD   I  E  R   +     R+     
Sbjct: 82  TLSDAPLFPDIATAFAERLDG--RVLVAHNAAFDWSMIAREFARSKTEAPVRQRLCTIAL 139

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                 P + + L +L   YG+       H AL D+ +L++ +   +   ++     
Sbjct: 140 SKELGLPLANHKLETLAAHYGVV--QERAHHALDDARVLAETFRPSLHRAAEAGVRL 194


>gi|284030730|ref|YP_003380661.1| DNA polymerase III subunit epsilon [Kribbella flavida DSM 17836]
 gi|283810023|gb|ADB31862.1| DNA polymerase III, epsilon subunit [Kribbella flavida DSM 17836]
          Length = 602

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 68/201 (33%), Gaps = 4/201 (1%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG    +  I EIGAV++         FQ  + P      P    L GITD  +
Sbjct: 41  VVDLETTGGAPGDSGITEIGAVKVRAGELVGE-FQSLVNP-AEPIPPFIAVLTGITDLMV 98

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P   S+   F +    +    +AHNA FDVGF+  + Q    D  D   +   L   
Sbjct: 99  ASSPRIGSVLPAFLE--FARGCVLVAHNAPFDVGFLKHDSQVHGYDWPDFPVVDTALLAR 156

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R   P    +            +    H AL D+    DV   +      +      +  
Sbjct: 157 RVLTPDEVPNCKLGTLAKLFRATTTPNHRALSDARATVDVLHGLFERVGSLGVQTLEDLQ 216

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
            F       V     L    P
Sbjct: 217 TFSARVAPAVRKKRHLAESLP 237


>gi|15605265|ref|NP_220051.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           D/UW-3/CX]
 gi|3328974|gb|AAC68138.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX]
 gi|297748666|gb|ADI51212.1| Exonuclease family protein [Chlamydia trachomatis D-EC]
 gi|297749546|gb|ADI52224.1| Exonuclease family protein [Chlamydia trachomatis D-LC]
          Length = 250

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 4/182 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+    +  +  D ETTGLD K DR+IE  A+        +   +  + P  R  S E+ 
Sbjct: 1   MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSV-EFLIHPE-RAVSAESQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K+H I+D  L+DKP F  +FS    FF E++     H             +         
Sbjct: 59  KIHKISDAMLRDKPKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLGETLLPKH 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +IDTL +A+    S  N L +L + + +       H A+ D  +   V+  +      
Sbjct: 119 HYVIDTLRLAKGYGDSPNNSLEALARHFNVPHQGN--HRAMKDVEMNVKVFKHLTKRFRT 176

Query: 181 IN 182
           ++
Sbjct: 177 LS 178


>gi|306832698|ref|ZP_07465835.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
 gi|304425154|gb|EFM28283.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
          Length = 1464

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 426 YVVFDVETTGLSAVNNDLIQIAASKMYKGNIV-EQFDEFINP-GHHLSAFTTELTGITDN 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++      +   F +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 484 HVRNAKPIEEVLQMFQNFCQD--TVLVAHNATFDVGFMNANYERHGMPIITQPVIDTLEF 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 542 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEARE 591


>gi|302345413|ref|YP_003813766.1| exonuclease [Prevotella melaninogenica ATCC 25845]
 gi|302149990|gb|ADK96252.1| exonuclease [Prevotella melaninogenica ATCC 25845]
          Length = 284

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 68/198 (34%), Gaps = 6/198 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGLD  NDRII+I  +++    K  R   +F+ P  +    E   L GI+D  
Sbjct: 10  IVFDLETTGLDLVNDRIIQISFIKVHPDGKEERE-NIFINPE-KPIPAEVTLLTGISDAD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+F     +  D F   +      N           L+          R+ID  +I
Sbjct: 68  VADAPTFKQKAKDLSDKFAGCDFAGYNSNRFDVPMLAEEFLRAGVDFDFSKCRLIDAQNI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          +   ++           A          +  +         G +  E
Sbjct: 128 YHK----MERRNLAAAYKFYCGRKMEDDFEAHKADQDTEATWCVLQGELDMYAPGNQEEE 183

Query: 190 DRFFKEEKKTVPNISLLK 207
           DR    +   +   S + 
Sbjct: 184 DRVLNNDMDELAEFSRMN 201


>gi|257094042|ref|YP_003167683.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046566|gb|ACV35754.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 484

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 7/162 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ET+G +  +DR+IE+G VE+       R + V + P     SP   +L GI D  
Sbjct: 13  VFVDLETSGANFASDRVIEVGLVEVDADGV--REWSVLVNPE-APISPFITRLTGIDDAM 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P+F  +     D    +     AHNA+FD GF+  E +R+  +    +  + T+ +
Sbjct: 70  VGSAPTFRQLAPTLLDRLRGRLLV--AHNARFDYGFLQCEFKRLGVE--FRTPTLCTVKL 125

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +R+  P                    ++H AL D+ +L +++
Sbjct: 126 SRKLFPEHHRHNLDALVTRHGLKVAGNRHRALADARILWELW 167


>gi|325265145|ref|ZP_08131871.1| DNA polymerase III PolC-type (PolIII) [Clostridium sp. D5]
 gi|324029549|gb|EGB90838.1| DNA polymerase III PolC-type (PolIII) [Clostridium sp. D5]
          Length = 233

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 7/166 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FD+ETTGL+ + + IIEIGA+++ D       F  F+ P    +    + ++     
Sbjct: 5   YIAFDLETTGLNPEQNEIIEIGALKVRDGK-VQERFMEFVRPTENISP---VVMNLTGIT 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 + SS            +   I HN  FD  F+         D          ++
Sbjct: 61  NEMVADARSSRNVIPDFLDFCGDDILIGHNVIFDYSFVKIGAMAEGLDFERAGIDTLKIA 120

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               K   S++     C      I + + H A  D+   + +Y  +
Sbjct: 121 RKVHKDMESKSL---GCLCDYYHIENNAAHRAYHDALATAKLYQTL 163


>gi|288803395|ref|ZP_06408828.1| exonuclease [Prevotella melaninogenica D18]
 gi|288334215|gb|EFC72657.1| exonuclease [Prevotella melaninogenica D18]
          Length = 284

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 68/198 (34%), Gaps = 6/198 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGLD  NDRII+I  +++    K  R   +F+ P  +    E   L GI+D  
Sbjct: 10  IVFDLETTGLDLVNDRIIQISFIKVHPDGKEERE-NIFINPE-KPIPAEVTLLTGISDAD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+F     +  D F   +      N           L+          R+ID  +I
Sbjct: 68  VADAPTFKQKAKDLSDKFAGCDFAGYNSNRFDVPMLAEEFLRAGVDFDFSKCRLIDAQNI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          +   ++           A          +  +         G +  E
Sbjct: 128 YHK----MERRNLAAAYKFYCGRKMEDDFEAHKADQDTEATWRVLQGELDMYAPGNQEEE 183

Query: 190 DRFFKEEKKTVPNISLLK 207
           DR    +   +   S + 
Sbjct: 184 DRVLNNDMDELAEFSRMN 201


>gi|50084341|ref|YP_045851.1| ribonuclease T [Acinetobacter sp. ADP1]
 gi|49530317|emb|CAG68029.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse
           activity) [Acinetobacter sp. ADP1]
          Length = 221

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 66/197 (33%), Gaps = 16/197 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54
           +V D+ET G +++ D ++EI  + ++           ++   + P           +   
Sbjct: 25  VVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYHAHINPFEGANLDRRSLDFIG 84

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P       + ++             E        +A  + HNA FD+GF+ A + R +
Sbjct: 85  IDPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDLGFLQAAIARTS 144

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +P                    + +  C + GI    +  H AL D+   ++++  
Sbjct: 145 TKNQNPFHSFSVFDTVTLSAVMFGQTVLAKACIQAGIDFDGKEAHSALYDTQKTAELFCY 204

Query: 174 MMVGGSQINFGFKTNED 190
           ++   S         + 
Sbjct: 205 ILNKLSPHLLDTFLADQ 221


>gi|193212627|ref|YP_001998580.1| DNA polymerase III subunit epsilon [Chlorobaculum parvum NCIB 8327]
 gi|193086104|gb|ACF11380.1| DNA polymerase III, epsilon subunit [Chlorobaculum parvum NCIB
           8327]
          Length = 232

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 63/183 (34%), Gaps = 8/183 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +++D ETTG D ++DRII IGAV           +F+V L                + 
Sbjct: 44  RFVIYDTETTGFDFRHDRIISIGAVGTKGEVIDIADSFEVLLRQEVCSERDAVTVHGLLK 103

Query: 67  DE-----FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            +        +       +              IA   +         L     D    +
Sbjct: 104 RDIDSGLEESEAVCRFLDYLGNAVIVAHHADFDIAMINQVLSRRFGMRLFNEALDTASFA 163

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           + ++        H      L++LC RYGI      +H A  D++L + ++ +++  G + 
Sbjct: 164 KRLEKGPYYNLAHKGGEYRLDNLCARYGIR--LYDRHTAPGDAYLTAQLFQRLLALGRKA 221

Query: 182 NFG 184
              
Sbjct: 222 GID 224


>gi|281424378|ref|ZP_06255291.1| exonuclease [Prevotella oris F0302]
 gi|281401647|gb|EFB32478.1| exonuclease [Prevotella oris F0302]
          Length = 286

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 6/198 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGLD  NDRII++  +++       R     + P G+        L GI DE 
Sbjct: 10  VVFDLETTGLDIVNDRIIQLSFIKVCPDGTEERGDH-LINP-GKHIPDMVSALTGIDDEK 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD PSF  + +   + F   +      N           L+          R+ID  +I
Sbjct: 68  VKDAPSFKQLSATLAEKFKGCDFAGFNSNRFDVPMLAEEFLRAGIDFDFSKCRLIDAQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          +    +           A          Y  ++      +   ++  
Sbjct: 128 FHK----MEKRNLAAAYEFYCGRKMEEDFEAHRADQDTEATYRVLLGQLDMYSADKQSEA 183

Query: 190 DRFFKEEKKTVPNISLLK 207
           +R    +   + + S   
Sbjct: 184 ERILPNDMDYLADFSKQN 201


>gi|320547752|ref|ZP_08042036.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
 gi|320447512|gb|EFW88271.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
          Length = 1464

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 426 YVVFDVETTGLSAVHNDLIQIAASKMYKGNIV-EQFDEFINP-GHHLSAFTTELTGITDN 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++      +   F DF  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 484 HVRNAKPIEQVLQMFQDFCKD--TVLVAHNATFDVGFMNANYKRHGMPTITQPVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 542 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEARE 591


>gi|302561385|ref|ZP_07313727.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302479003|gb|EFL42096.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 314

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 75/190 (39%), Gaps = 8/190 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L    +    +   + P      P  + +HG+T +
Sbjct: 10  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTTVNPER---DPGPVWIHGLTSD 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  + +EF           +AHNA FD   I  E  R   +     R+     
Sbjct: 66  VLEGAPLFKDVAAEFAARLEG--RVLVAHNAVFDWQMIAREYARARGEAPVRQRLCTIAL 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
               K P   + L SL   +G+       H AL D+ +L++ +   +   +        +
Sbjct: 124 SKELKLPLPNHKLESLAAHFGVVQRRA--HHALDDARVLAEAFRPSLRAAAAGGVRLPLH 181

Query: 189 EDRFFKEEKK 198
           E R   E  +
Sbjct: 182 ECRPLTEWTE 191


>gi|58337906|ref|YP_194491.1| DNA polymerase III [Lactobacillus acidophilus NCFM]
 gi|227902927|ref|ZP_04020732.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796]
 gi|58255223|gb|AAV43460.1| DNA polymerase III [Lactobacillus acidophilus NCFM]
 gi|227869343|gb|EEJ76764.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796]
          Length = 318

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 63/205 (30%), Gaps = 3/205 (1%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIETTGL    DRI E+GAV++ +    ++ +   +        P  +       E   
Sbjct: 36  LDIETTGLSPYRDRITELGAVKVRNGQIVDQ-YTNLVKFPKNNKVPAFITKLNGITEEQI 94

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                 +  +         +     +N  FD+ F+    Q+     L+   +        
Sbjct: 95  INEGIPAEQAITEFREFIGDDVIAGYNINFDLNFLYDLSQKFKLPILNNDYVDVLRLARA 154

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191
                  N L    +R GI      +H  L DS     VY       +        N+ +
Sbjct: 155 YYPRERHNRLIDCMQRAGIA--KVEQHHGLADSLDTIKVYNDFSEHFTDELLENARNKIK 212

Query: 192 FFKEEKKTVPNISLLKRDKPLFTRI 216
                   V    L  R+     +I
Sbjct: 213 NVDLTGDEVDYYQLGYRNPVQNKKI 237


>gi|171778812|ref|ZP_02919874.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282458|gb|EDT47882.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 1464

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 426 FVVFDVETTGLSAVNNDLIQIAASKMYKGNIV-EQFDEFINP-GHHLSAFTTELTGITDN 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++      +   F DF  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 484 HVRNAKPIEEVLQMFQDFCQD--TVLVAHNATFDVGFMNANYERHGMPIITQPVIDTLEF 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 542 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEARE 591


>gi|310779125|ref|YP_003967458.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
 gi|309748448|gb|ADO83110.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
          Length = 1442

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 7/221 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V+D+ET GL+S  + IIEIGA++L      ++ +   + P G+    +  +L GITD+
Sbjct: 415 YVVYDLETMGLNSHENEIIEIGAIKLKGTRIVDK-YSQLINP-GKSIPSKIQELTGITDD 472

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD+PS   +   F +     +A  +AHNA+FD+GF+  ++++          +IDTL 
Sbjct: 473 MVKDEPSIEEVLPGFLE--FAGDATLVAHNARFDIGFLTRDVKKYTNIKDYKPSVIDTLQ 530

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
            AR   P  R           + ++  + H A+ DS   + ++   +    +        
Sbjct: 531 WARDLLPDLRGYGLKSV-TKKLGVALENHHRAVDDSQATAHMFAIFLEKFIEEGAVKLNE 589

Query: 189 EDRFF--KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
            D+ F    +K+   N+ LL ++      + K   + H   
Sbjct: 590 LDKVFPVNIKKQDTSNVMLLVKNNTGLKNLYKLVSEAHINY 630


>gi|295133689|ref|YP_003584365.1| exonuclease family protein [Zunongwangia profunda SM-A87]
 gi|294981704|gb|ADF52169.1| exonuclease family protein [Zunongwangia profunda SM-A87]
          Length = 218

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 62/178 (34%), Gaps = 5/178 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALK--LHGI 65
            +V D ETTG D + DRI+ IG V++ +       +F+++L           +   +   
Sbjct: 37  FVVLDTETTGFDQEKDRILSIGCVKIKNNKLLVADSFEIYLKQEKFNPDTVEIHGLIKHE 96

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E + ++ +         D     +      N        N   +  N+          
Sbjct: 97  RFETISEEKAIQLFLKYIKDSVLVAHHAGFDINMINAALKRNHLPKLKNRVLDTGILYRK 156

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           T  I+          L+ +   Y I    + +H A+ D+ + +  ++K++    +   
Sbjct: 157 TRIISNFIDQHKTYSLDEVALAYNID--LKDRHTAIGDAFITAIAFLKILGRLKRKKL 212


>gi|119945580|ref|YP_943260.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
 gi|119864184|gb|ABM03661.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
          Length = 204

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 78/174 (44%), Gaps = 7/174 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
             ++FD ETTGL  K  DR IEIGAV + +     R FQ  + P  R +S          
Sbjct: 6   NIVIFDFETTGLSPKMGDRPIEIGAVRIKNGLLVER-FQALMHPGIRISSFIENFTGISN 64

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
               + KP  + +   F DF    N   +AHNA FD  F++AEL RI++           
Sbjct: 65  KMLAEAKPC-AEVMGRFCDFIGSDN--LVAHNASFDKRFLDAELHRISRGYSGQISCSML 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           L+    +  +  + L +L     I  +    H AL DS + ++V++ M+    Q
Sbjct: 122 LARRVLRD-APNHKLGTLVDYLNI-QTEGVYHRALFDSEMTANVWLAMINKIQQ 173


>gi|121603395|ref|YP_980724.1| DNA polymerase III subunit epsilon [Polaromonas naphthalenivorans
           CJ2]
 gi|120592364|gb|ABM35803.1| Exonuclease, RNase T and DNA polymerase III [Polaromonas
           naphthalenivorans CJ2]
          Length = 220

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 2/131 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+++ D II IGAV +  +   T+   ++ + P  R+ S E++++H + +
Sbjct: 42  WVALDCETTGLNTRTDDIIAIGAVRIRDNRIMTSERLELLVRPEKRRLSAESVRVHRLRE 101

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRIIDT 126
           + +    S      +   F   +            +   +   +  +             
Sbjct: 102 QDVAQGISADEAMMKLMYFIGSRPLVGYYLEFDLAMINRVLFPMLGMGLPQPKIEVSSMY 161

Query: 127 LSIARRKHPSS 137
                 + P  
Sbjct: 162 YDYKFHQLPHH 172


>gi|221195007|ref|ZP_03568063.1| putative exonuclease, RNase T and DNA polymerase III [Atopobium
           rimae ATCC 49626]
 gi|221184910|gb|EEE17301.1| putative exonuclease, RNase T and DNA polymerase III [Atopobium
           rimae ATCC 49626]
          Length = 251

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 5/166 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTGLD + D II++  +    + K+   F+  +CP  RK  P A +++GIT + +K
Sbjct: 26  IDTETTGLDPRKDEIIQLSMI--DGHGKS--IFESLICPPTRKRWPNAQEINGITPKMVK 81

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
            KP    +  +  +  N  +   + +N  FD+  + AE    +                R
Sbjct: 82  GKPELEEVADQVQEAINAADLI-VGYNLPFDISMMEAEGFDFSDKEQYDLMEDYAQVFGR 140

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                       L           + H A  D+     ++  M+  
Sbjct: 141 WSSAKDDYLWTKLTTAAKHYGIKFAAHDAGEDARATIKLFYAMLSD 186


>gi|194291379|ref|YP_002007286.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular
           protein) [Cupriavidus taiwanensis LMG 19424]
 gi|193225283|emb|CAQ71225.1| DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (modular
           protein) [Cupriavidus taiwanensis LMG 19424]
          Length = 532

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 6/105 (5%)

Query: 8   RKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IVF D+ETTG D++ DRI EIG VE+         ++  L P G    P   ++ GI+
Sbjct: 31  RPIVFVDLETTGADAQRDRITEIGVVEVGPDGIV--EWETLLDP-GMSIPPFIQRMTGIS 87

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           D+ ++ +P+F S+     +        ++AHNA+FD GF+    +
Sbjct: 88  DDMVRGQPTFESLAESLAERLQG--RLFVAHNARFDYGFLKNAFR 130


>gi|89897057|ref|YP_520544.1| hypothetical protein DSY4311 [Desulfitobacterium hafniense Y51]
 gi|89336505|dbj|BAE86100.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1447

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 77/206 (37%), Gaps = 7/206 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG  +  ++I EIG +++      ++ F  F+ P  +      +++  ITD+
Sbjct: 424 YCVLDLETTGFSAATEKITEIGIMKIQGGKIIDQ-FGCFVNPE-KPIPARVVEVTNITDD 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D  +   +F +  +F     +  +AHNA FD+GF+    + +  D         +L+
Sbjct: 482 MVRDAETIDQVFPKILNFIEG--SVLVAHNADFDMGFLKHNAKVLGYDFDYTYLDTLSLA 539

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +            + I     H AL D      V+  M+    +       +
Sbjct: 540 KELFPDYKTYKL---GRIAKNLGIKVEVAHRALDDVGTTVKVFNIMVDMLKERGVETLED 596

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
            D    +E         LK    +  
Sbjct: 597 IDLKAADEAARKDEYKKLKTYHAIIL 622


>gi|219667072|ref|YP_002457507.1| DNA polymerase III subunit alpha [Desulfitobacterium hafniense
           DCB-2]
 gi|219537332|gb|ACL19071.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense
           DCB-2]
          Length = 1447

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 77/206 (37%), Gaps = 7/206 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG  +  ++I EIG +++      ++ F  F+ P  +      +++  ITD+
Sbjct: 424 YCVLDLETTGFSAATEKITEIGIMKIQGGKIIDQ-FGCFVNPE-KPIPARVVEVTNITDD 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D  +   +F +  +F     +  +AHNA FD+GF+    + +  D         +L+
Sbjct: 482 MVRDAETIDQVFPKILNFIEG--SVLVAHNADFDMGFLKHNAKVLGYDFDYTYLDTLSLA 539

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   +            + I     H AL D      V+  M+    +       +
Sbjct: 540 KELFPDYKTYKL---GRIAKNLGIKVEVAHRALDDVGTTVKVFNIMVDMLKERGVETLED 596

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
            D    +E         LK    +  
Sbjct: 597 IDLKAADEAARKDEYKKLKTYHAIIL 622


>gi|326407708|gb|ADZ64779.1| DNA polymerase III subunit alpha, Gram-positive type [Lactococcus
           lactis subsp. lactis CV56]
          Length = 1638

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 7/190 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +  +  F  F+ P  R +           D 
Sbjct: 596 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINPGYRLSEFTTELTGITDDH 654

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
               KP +  +          +    +AHNA FDVGF+N    R     +       ++ 
Sbjct: 655 VKNAKPLYEVLTKFQK---FCEGTILVAHNATFDVGFMNMNYSRNGLPIITQPVVDTLEF 711

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                 +         +   + G+   H +   A     LL  V+++ +   +       
Sbjct: 712 ARNLYPEMKRFGLGQLTKKFQIGLEYHHMANFDAEATGRLLF-VFLEELRTRNTGWTSLL 770

Query: 187 TNEDRFFKEE 196
              D+   E+
Sbjct: 771 ELNDKLVSED 780


>gi|282879820|ref|ZP_06288549.1| exonuclease [Prevotella timonensis CRIS 5C-B1]
 gi|281306330|gb|EFA98361.1| exonuclease [Prevotella timonensis CRIS 5C-B1]
          Length = 286

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 75/198 (37%), Gaps = 6/198 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+FD+ETTGLD  NDRII+I  +++L   +  R   +F+ P  +    E ++L GIT+E 
Sbjct: 10  IIFDLETTGLDLVNDRIIQISYIKVLPNGEEERE-SIFVNPE-KPIPHEVIELTGITNED 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P F  I +   + F + +      N           L+           +ID  +I
Sbjct: 68  VANAPKFKEIAAHLQNQFKDSDIAGFNSNHFDVPLLAEEFLRAGIDFDFSKCNLIDVQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          +   ++           A   +      Y  ++    + +      +
Sbjct: 128 FHK----MERRNLAAAYKFYCGRKMEEDFQAHKANEDAEATYRVLLGQLERYDPDKAEEK 183

Query: 190 DRFFKEEKKTVPNISLLK 207
           +R    + + + N S   
Sbjct: 184 ERALPNDMQYLANFSKTN 201


>gi|306846211|ref|ZP_07478773.1| DNA polymerase III subunit epsilon [Brucella sp. BO1]
 gi|306273462|gb|EFM55323.1| DNA polymerase III subunit epsilon [Brucella sp. BO1]
          Length = 332

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 72/234 (30%), Gaps = 23/234 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +K +           D         IAHNA FD  F+    +R +    +      
Sbjct: 134 TDEMVKGRTIPRDEL----DALIAGADIIIAHNAGFDRPFL----ERFSIAFANKPWACS 185

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178
              I           L  L  + G   +             +          + +++   
Sbjct: 186 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 245

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
            +           F  ++               R K  +T + + EL+   + +
Sbjct: 246 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGENELEAELEYL 299


>gi|39938951|ref|NP_950717.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722060|dbj|BAD04550.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 1571

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 5/181 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D+IIEI  V++   +K    FQ F+ P  +K +     +  ITDE
Sbjct: 481 YVVFDLETTGLSNVRDKIIEIAGVKIKKGNKIGE-FQKFIDPQ-QKLTKTITDITNITDE 538

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+ + +   +  +F      ++   +AHNA FD+ F+  + + +    L+P  IIDT++
Sbjct: 539 MLQGQQTIDQVLPQFLA--FAKDCVLVAHNASFDINFLKEKAKELKIS-LEPQPIIDTMA 595

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +++R   +     +         +     H AL D+   ++++IKM+   +      K  
Sbjct: 596 LSQRYFSNLLKYFSLKRLATFFKVKLEDHHRALADATATAEIFIKMIDQLADPTKDPKDE 655

Query: 189 E 189
           +
Sbjct: 656 Q 656


>gi|166154751|ref|YP_001654869.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu]
 gi|166155626|ref|YP_001653881.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336025|ref|ZP_07224269.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1]
 gi|165930739|emb|CAP04236.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu]
 gi|165931614|emb|CAP07190.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 250

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 4/182 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+    +  +  D ETTGLD K DR+IE  A+        +   +  + P  R  S E+ 
Sbjct: 1   MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSV-EFLIHPE-RAVSAESQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K+H I+D  L+DKP F  +FS    FF E++     H             +         
Sbjct: 59  KIHKISDAMLRDKPKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLGETLLPKH 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +IDTL +A+    S  N L +L + + +       H A+ D  +   V+  +      
Sbjct: 119 HYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGN--HRAMKDVEMNVKVFKHLTKRFRT 176

Query: 181 IN 182
           ++
Sbjct: 177 LS 178


>gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
           MA-4680]
 gi|29610102|dbj|BAC74150.1| putative DNA polymerase III epsilon subunit [Streptomyces
           avermitilis MA-4680]
          Length = 325

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 8/163 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L    +    +   + P      P  + +HG+T +
Sbjct: 22  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTMVNPER---DPGPVWIHGLTSD 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I +EF     +     +AHNA FD   I  E  R         R+     
Sbjct: 78  VLEGAPLFEDIAAEFASRLAD--RVLVAHNAVFDWSMIAREYARAKSQAPVRQRLCTIAL 135

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                 P   + L SL   +G+       H AL D+ +L++ +
Sbjct: 136 SKELGLPLPNHKLESLAAHFGVVQQRA--HHALDDARVLAEAF 176


>gi|194333861|ref|YP_002015721.1| DNA polymerase III subunit epsilon [Prosthecochloris aestuarii DSM
           271]
 gi|194311679|gb|ACF46074.1| DNA polymerase III, epsilon subunit [Prosthecochloris aestuarii DSM
           271]
          Length = 232

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 68/182 (37%), Gaps = 8/182 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +VFD ETTG D   D +I IGAV +++     + +F+V +  + R    +A+ +HG+ 
Sbjct: 44  RYVVFDTETTGFDLSRDNVISIGAVAVMNGSIDISDSFEVLIRCD-RVGDGDAVSVHGLL 102

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L    +       F ++  +       H             +  + + L+      +
Sbjct: 103 RRDLVGGCNEREALDGFLNYIGDSILV-AQHAGFDIAMMNAIMRRHYHMELLNDVLDTAS 161

Query: 127 LSIARRKHPSSRNDLNSLCKR-----YGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           L+    K P       S   R         I    +H +  D+ L + ++ +++   +  
Sbjct: 162 LAKRLEKGPYYNLAHKSGEYRLDSLLERYHIRLYDRHTSAGDAFLTAQLFQRLLYSAASA 221

Query: 182 NF 183
             
Sbjct: 222 GI 223


>gi|225352024|ref|ZP_03743047.1| hypothetical protein BIFPSEUDO_03631 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157271|gb|EEG70610.1| hypothetical protein BIFPSEUDO_03631 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 196

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 67/177 (37%), Gaps = 5/177 (2%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            IV D ETTGL   K  ++IEIGAV++ +    +  F   + P           L GI D
Sbjct: 22  YIVIDTETTGLSVRKGAKLIEIGAVKIRNDELVDE-FDQLINP-FEHVPSRITGLTGIDD 79

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDT 126
             L  KP    +  EF  +     A  +AHNA FD+ F++  +Q   ++     +     
Sbjct: 80  GMLLGKPDVREVMDEFARW-CSDTAVVMAHNASFDMSFLDNAVQLAYSERDARFAHHFVD 138

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                R+    +             I+   +H AL D+     +Y  M      +  
Sbjct: 139 TLDLSRRLHPEKRSHKVSTLIVDYHIADMEEHRALSDARQEWMLYRAMRDEAELLGM 195


>gi|159039058|ref|YP_001538311.1| hypothetical protein Sare_3518 [Salinispora arenicola CNS-205]
 gi|157917893|gb|ABV99320.1| DNA polymerase III, epsilon subunit [Salinispora arenicola CNS-205]
          Length = 585

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 64/167 (38%), Gaps = 3/167 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       I EIGAV++    +        + P G    P    L GIT  
Sbjct: 32  FVVVDLETTGGAPDGGGITEIGAVKVRGGEQLG-VLATLVNP-GVPVPPFVTVLTGITQA 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   PS + +   F +F +  +A  +AHNA +DVGF+ A          +P  +     
Sbjct: 90  MLLPAPSIAQVLPSFLEFLSA-DAVLVAHNAPYDVGFLKAACAAHGHRWPNPRILDTAAL 148

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R        +            S +  H AL D+    DV   ++
Sbjct: 149 ARRVLSRDEVPNRRLGTLAAYFRTSTQPTHRALDDAKATVDVLHGLI 195


>gi|332311763|gb|EGJ24858.1| DNA polymerase III polC-type [Listeria monocytogenes str. Scott A]
          Length = 1457

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 441 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 498

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F +     +   +AHNA FD+GFIN   +++  +  + + +     
Sbjct: 499 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 556

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187
                     + LN+L K++   I     H A+ D+   + +  K++    ++ N  F  
Sbjct: 557 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHD 614

Query: 188 NEDRFFKEEKKTVPNISL 205
           + + +  E          
Sbjct: 615 SLNDYMGEGDAYKRARPF 632


>gi|225076263|ref|ZP_03719462.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens
           NRL30031/H210]
 gi|224952387|gb|EEG33596.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens
           NRL30031/H210]
          Length = 463

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 7/171 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG +   DRI E+  V       T   ++  + P  R       +L GI DE 
Sbjct: 22  VVVDLETTGGNFYQDRITEVALVRFEQGRAT--HYEQLVNP-CRSIPEFVARLTGIHDET 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+ P F+ I ++         A  +AHN++FD  F+  E  RI+ D    +  + T+ +
Sbjct: 79  VKNAPVFADIAADLLPLLQG--AVVVAHNSRFDYTFLRHEFARIHTD--FAAPSLCTVQL 134

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +RR +P                 +          + L   + + +     Q
Sbjct: 135 SRRLYPEFYKHSLDSIIERTGIQTANRHRAMTDVAALCDYLELSLAEKNHQ 185


>gi|34557013|ref|NP_906828.1| DNA polymerase III subunit epsilon [Wolinella succinogenes DSM
          1740]
 gi|34482728|emb|CAE09728.1| DNA POLYMERASE III, EPSILON SUBUNIT, PUTATIVE [Wolinella
          succinogenes]
          Length = 203

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGR 53
          + FD ETTGLD K D II + AV++  +   T+   Q+F+ P G 
Sbjct: 32 VAFDCETTGLDPKKDEIISLAAVKIRDNKILTSEKLQLFVKPKGE 76


>gi|313608987|gb|EFR84729.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL F2-208]
          Length = 1447

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 431 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 488

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F +     +   +AHNA FD+GFIN   +++  +  + + +     
Sbjct: 489 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 546

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L K++   I     H A+ D+   + +  K++    +++     +
Sbjct: 547 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDFHD 604

Query: 189 EDRFFKEEKKTVPNISLL 206
               +  E          
Sbjct: 605 SLNDYMGEGDAYKRARPF 622


>gi|217964533|ref|YP_002350211.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes HCC23]
 gi|217333803|gb|ACK39597.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes HCC23]
 gi|307570901|emb|CAR84080.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes L99]
          Length = 1443

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 427 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F +     +   +AHNA FD+GFIN   +++  +  + + +     
Sbjct: 485 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L K++   I     H A+ D+   + +  K++    +++     +
Sbjct: 543 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDFHD 600

Query: 189 EDRFFKEEKKTVPNISLL 206
               +  E          
Sbjct: 601 SLNDYMGEGDAYKRARPF 618


>gi|261207399|ref|ZP_05922085.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289566679|ref|ZP_06447096.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium D344SRF]
 gi|260078290|gb|EEW65995.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289161538|gb|EFD09421.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium D344SRF]
          Length = 1452

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 16/225 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P    +      +      
Sbjct: 427 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            ++   +AHNA FD+GF+N    R          I     
Sbjct: 483 DGMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARHGIPEAANPVIDTLEL 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R  L  L K++G++      H A+ D+     +          +      +
Sbjct: 543 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 594

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
              +  +  + +      KR +P    I    L ++   ++ L K
Sbjct: 595 NMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 635


>gi|226223921|ref|YP_002758028.1| DNA polymerase III (alpha subunit) [Listeria monocytogenes
           Clip81459]
 gi|225876383|emb|CAS05092.1| Putative DNA polymerase III (alpha subunit) [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 1444

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F +     +   +AHNA FD+GFIN   +++  +  + + +     
Sbjct: 486 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187
                     + LN+L K++   I     H A+ D+   + +  K++    ++ N  F  
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHD 601

Query: 188 NEDRFFKEEKKTVPNISL 205
           + + +  E          
Sbjct: 602 SLNDYMGEGDAYKRARPF 619


>gi|254932365|ref|ZP_05265724.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|293583921|gb|EFF95953.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|328475042|gb|EGF45830.1| DNA polymerase III PolC [Listeria monocytogenes 220]
          Length = 1444

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F +     +   +AHNA FD+GFIN   +++  +  + + +     
Sbjct: 486 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187
                     + LN+L K++   I     H A+ D+   + +  K++    ++ N  F  
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHD 601

Query: 188 NEDRFFKEEKKTVPNISL 205
           + + +  E          
Sbjct: 602 SLNDYMGEGDAYKRARPF 619


>gi|146299725|ref|YP_001194316.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
 gi|146154143|gb|ABQ04997.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
          Length = 459

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 4/109 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG ++   RI EI  + + D       ++  + P  +   P    L GI +E
Sbjct: 6   YAIVDIETTGGNASGSRITEIAII-IHDGKNVLDRYETLVNPE-QDIPPSIFGLTGINNE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            + + P F  I  +  +   +    ++AHN  FD  F++ +L++     
Sbjct: 64  MVANAPIFDDISEKVLEMLTD--RIFVAHNVNFDYSFVHHQLEQAGFKW 110


>gi|257894713|ref|ZP_05674366.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
 gi|257831092|gb|EEV57699.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
          Length = 1450

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 16/225 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P    +      +      
Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            ++   +AHNA FD+GF+N    R          I     
Sbjct: 481 DEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLEL 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R  L  L K++G++      H A+ D+     +          +      +
Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 592

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
              +  +  + +      KR +P    I    L ++   ++ L K
Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 633


>gi|218261817|ref|ZP_03476532.1| hypothetical protein PRABACTJOHN_02203 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223763|gb|EEC96413.1| hypothetical protein PRABACTJOHN_02203 [Parabacteroides johnsonii
           DSM 18315]
          Length = 256

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 70/206 (33%), Gaps = 8/206 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG++   DRI+EI  V++  +  + ++T    + P      PE+  +HGITDE
Sbjct: 10  VFFDLETTGINIVKDRIVEISFVKVYPNGKEESKT--RRINPE-MPIPPESTAIHGITDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P+F  I           +      N           L+      L+  + ID  +
Sbjct: 67  DVKDCPTFKEIAKSLATQIEGCDLAGYNSNRFDIPLLAEEFLRAGVDIDLNRRKFIDVQT 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I  +          S   ++    S  + H A  D+    +V    +    ++       
Sbjct: 127 IFHK----MEQRTLSAAYKFYCDKSLENAHTAEADTMATYEVLKAQLDRYPELQNDIDFL 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
                           +         
Sbjct: 183 SKYSSYTNNVDFAGRMVYNDKGEEII 208


>gi|46907546|ref|YP_013935.1| DNA polymerase III PolC [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093944|ref|ZP_00231681.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes str. 4b H7858]
 gi|254824621|ref|ZP_05229622.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300765440|ref|ZP_07075422.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL N1-017]
 gi|67460321|sp|Q720A2|DPO3_LISMF RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|46880814|gb|AAT04112.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47017682|gb|EAL08478.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes str. 4b H7858]
 gi|293593859|gb|EFG01620.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300513877|gb|EFK40942.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL N1-017]
 gi|328468603|gb|EGF39603.1| DNA polymerase III PolC [Listeria monocytogenes 1816]
          Length = 1444

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F +     +   +AHNA FD+GFIN   +++  +  + + +     
Sbjct: 486 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187
                     + LN+L K++   I     H A+ D+   + +  K++    ++ N  F  
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHD 601

Query: 188 NEDRFFKEEKKTVPNISL 205
           + + +  E          
Sbjct: 602 SLNDYMGEGDAYKRARPF 619


>gi|319764450|ref|YP_004128387.1| exonuclease rnase t and DNA polymerase iii [Alicycliphilus
          denitrificans BC]
 gi|330826666|ref|YP_004389969.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
          denitrificans K601]
 gi|317119011|gb|ADV01500.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
          denitrificans BC]
 gi|329312038|gb|AEB86453.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
          denitrificans K601]
          Length = 221

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPN 51
           +  D ETTGL+ + D I+ IGAV ++     T+   ++ + P 
Sbjct: 42 WVALDCETTGLNPRTDEIVSIGAVRIVGERILTSERLELLVRPE 85


>gi|294507448|ref|YP_003571506.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8]
 gi|294343776|emb|CBH24554.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8]
          Length = 563

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 4/116 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG    +DRI+EIGAV++ D +  +R FQ  + P  +       K+ GIT  
Sbjct: 8   FVVTDLETTGTTPDDDRIMEIGAVKVRDGAVVDR-FQQLVNPQ-QSVPGRITKMTGITTG 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            + + P    +  ++  F  +     +AHN  FD  F++AELQR+  + L    + 
Sbjct: 66  MVFEAPPADEVLPDYRAFLGD--GILVAHNVSFDGSFLDAELQRMGDETLPNETLC 119


>gi|257878528|ref|ZP_05658181.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|293567721|ref|ZP_06679063.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1071]
 gi|294618725|ref|ZP_06698257.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1679]
 gi|294620761|ref|ZP_06699968.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium U0317]
 gi|257812756|gb|EEV41514.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|291589564|gb|EFF21370.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1071]
 gi|291595038|gb|EFF26383.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1679]
 gi|291599741|gb|EFF30751.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium U0317]
          Length = 1450

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 16/225 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P    +      +      
Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            ++   +AHNA FD+GF+N    R          I     
Sbjct: 481 DEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLEL 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R  L  L K++G++      H A+ D+     +          +      +
Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 592

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
              +  +  + +      KR +P    I    L ++   ++ L K
Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 633


>gi|42527504|ref|NP_972602.1| DNA polymerase III domain-containing protein [Treponema denticola
           ATCC 35405]
 gi|41818089|gb|AAS12513.1| DNA polymerase III domain protein [Treponema denticola ATCC 35405]
 gi|325473756|gb|EGC76945.1| DNA polymerase III domain-containing protein [Treponema denticola
           F0402]
          Length = 217

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG ++K +R++EIG V+        R + V + P  +   PEA K++ ITDE L
Sbjct: 18  AFDTETTGTEAKAERVVEIGCVKFDIRGVIAR-YNVLIDPE-KPMPPEAGKVNQITDEML 75

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +P F+ +  +F DF   +N   +AHNA FD+ FIN EL+R  K  L            
Sbjct: 76  AGQPKFAEVLPDFLDFI--RNTVLVAHNASFDINFINCELERCGKTKLTNKVFDTLTFAR 133

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                     L +L  ++G+     + H A  D+ +  + +
Sbjct: 134 ETLPGLQSYALQNLATQFGVQ--AVNAHRAEDDARVCMEFF 172


>gi|56477410|ref|YP_158999.1| nuclease subunit Cho of the excinuclease complex (UvrC homolog
           protein) [Aromatoleum aromaticum EbN1]
 gi|56313453|emb|CAI08098.1| Nuclease subunit Cho of the excinuclease complex (UvrC homolog
           protein) [Aromatoleum aromaticum EbN1]
          Length = 469

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 7/161 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+ETTG +  +DR+ EI  + +       R ++  + P  R       +L GITDE 
Sbjct: 8   VLIDVETTGANPVSDRVTEIAVLRIERGEIVGR-WESLVNPE-RPIPALIQRLVGITDEM 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P+F+ +        +   A ++AHNA+FD GFI  E  R+ +           LS 
Sbjct: 66  VAGAPTFAELADSVRGHLDG--AVFVAHNARFDYGFIRNEFSRLGQQFEASVLCTVKLSR 123

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           A       R+ L++L +R+G T    ++H A+ D+ +L   
Sbjct: 124 A-LYPEHHRHGLDALIERHGFTC--GARHRAMGDTDVLWQF 161


>gi|293556647|ref|ZP_06675212.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
 gi|291601182|gb|EFF31469.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
          Length = 1450

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 16/225 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P    +      +      
Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            ++   +AHNA FD+GF+N    R          I     
Sbjct: 481 DEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLEL 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R  L  L K++G++      H A+ D+     +          +      +
Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 592

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
              +  +  + +      KR +P    I    L ++   ++ L K
Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 633


>gi|332686697|ref|YP_004456471.1| DinG family ATP-dependent helicase YoaA [Melissococcus plutonius
           ATCC 35311]
 gi|332370706|dbj|BAK21662.1| DinG family ATP-dependent helicase YoaA [Melissococcus plutonius
           ATCC 35311]
          Length = 924

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 8/199 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG+D   DRII+ G V + +    +      + PN R    +   L GI++ 
Sbjct: 7   YAVVDLETTGVDPTVDRIIQFGCVLIENGEIVS-HIGTDVNPN-RIIPKQIQHLTGISNA 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  I    ++   +    ++AHN  FD  F++ EL      P      IDT+ 
Sbjct: 65  RVQKAPYFEDIAIMIFNLLTD--TIFVAHNVHFDYRFLSHEL-VRCGLPPLTIDAIDTVE 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +A+   P+ R+   S        + +   H A  D+ + ++  + +++          T 
Sbjct: 122 LAQIFLPTERSFRLSDLSSSLGLLHNHP-HQADSDAQVTAE--LLLIIEQKMYTLPLITM 178

Query: 189 EDRFFKEEKKTVPNISLLK 207
           E      E+        ++
Sbjct: 179 EKISQLGEQLVRQTGEYIQ 197


>gi|224499902|ref|ZP_03668251.1| DNA polymerase III PolC [Listeria monocytogenes Finland 1988]
          Length = 1444

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F +     +   +AHNA FD+GFIN   +++  +  + + +     
Sbjct: 486 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187
                     + LN+L K++   I     H A+ D+   + +  K++    ++ N  F  
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHD 601

Query: 188 NEDRFFKEEKKTVPNISL 205
           + + +  E          
Sbjct: 602 SLNDYMGEGDAYKRARPF 619


>gi|254828680|ref|ZP_05233367.1| polC [Listeria monocytogenes FSL N3-165]
 gi|254829923|ref|ZP_05234578.1| DNA polymerase III PolC [Listeria monocytogenes 10403S]
 gi|254898515|ref|ZP_05258439.1| DNA polymerase III PolC [Listeria monocytogenes J0161]
 gi|254911994|ref|ZP_05262006.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|254936321|ref|ZP_05268018.1| polC [Listeria monocytogenes F6900]
 gi|255026351|ref|ZP_05298337.1| DNA polymerase III PolC [Listeria monocytogenes FSL J2-003]
 gi|284801705|ref|YP_003413570.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284994847|ref|YP_003416615.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|258601084|gb|EEW14409.1| polC [Listeria monocytogenes FSL N3-165]
 gi|258608911|gb|EEW21519.1| polC [Listeria monocytogenes F6900]
 gi|284057267|gb|ADB68208.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284060314|gb|ADB71253.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|293589958|gb|EFF98292.1| DNA polymerase III [Listeria monocytogenes J2818]
          Length = 1444

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F +     +   +AHNA FD+GFIN   +++  +  + + +     
Sbjct: 486 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187
                     + LN+L K++   I     H A+ D+   + +  K++    ++ N  F  
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHD 601

Query: 188 NEDRFFKEEKKTVPNISL 205
           + + +  E          
Sbjct: 602 SLNDYMGEGDAYKRARPF 619


>gi|16803360|ref|NP_464845.1| DNA polymerase III PolC [Listeria monocytogenes EGD-e]
 gi|21263551|sp|Q8Y7G1|DPO3_LISMO RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16410736|emb|CAC99398.1| polC [Listeria monocytogenes EGD-e]
          Length = 1444

 Score = 66.9 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F +     +   +AHNA FD+GFIN   +++  +  + + +     
Sbjct: 486 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187
                     + LN+L K++   I     H A+ D+   + +  K++    ++ N  F  
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHD 601

Query: 188 NEDRFFKEEKKTVPNISL 205
           + + +  E          
Sbjct: 602 SLNDYMGEGDAYKRARPF 619


>gi|161986630|ref|YP_445565.2| hypothetical protein SRU_1441 [Salinibacter ruber DSM 13855]
          Length = 563

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 4/116 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG    +DRI+EIGAV++ D S  +R FQ  + P  +       K+ GIT  
Sbjct: 8   FVVTDLETTGTTPDDDRIMEIGAVKVRDGSVVDR-FQQLVNPQ-QSVPGRITKMTGITTG 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            + + P    +  ++  F  +     +AHN  FD  F++AELQR+  + L    + 
Sbjct: 66  MVFEAPPADEVLPDYRAFLGD--GILVAHNVSFDGSFLDAELQRMGDETLPNETLC 119


>gi|257900260|ref|ZP_05679913.1| DNA polymerase subunit III [Enterococcus faecium Com15]
 gi|257838172|gb|EEV63246.1| DNA polymerase subunit III [Enterococcus faecium Com15]
          Length = 295

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGL   +  I++IGA++     + +R +Q  + P     S    K+ G+  E
Sbjct: 124 YVVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQN-IKPFRSNISKRITKITGLELE 182

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P+F     +   F        +AHNA FD+ F+  +L   N +     R+IDTL 
Sbjct: 183 DVVNMPTFEDFSPQLMSFI--SCYTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLP 240

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +ARR   +  + L +L     +     + H AL D  + + VY
Sbjct: 241 LARRHFETPNHKLITLKDYLNL---DNNSHDALEDCLVTNKVY 280


>gi|224501737|ref|ZP_03670044.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-561]
          Length = 1444

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 7/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F +     +   +AHNA FD+GFIN   +++  +  + + +     
Sbjct: 486 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187
                     + LN+L K++   I     H A+ D+   + +  K++    ++ N  F  
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHD 601

Query: 188 NEDRFFKEEKKTVPNISL 205
           + + +  E          
Sbjct: 602 SLNDYMGEGDAYKRARPF 619


>gi|78355675|ref|YP_387124.1| DNA polymerase III subunit epsilon [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218080|gb|ABB37429.1| DNA polymerase III, epsilon subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 239

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 17/179 (9%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D+E TGLD ++D I+ IGAV +      T   F  ++ P  R  +  A  +H IT   L+
Sbjct: 45  DMEMTGLDPEHDEIVAIGAVRIRGLSIITGDVFHTYVRPQ-RSMARPATLIHRITPAQLQ 103

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-----------NKDPLDP 120
             P+ + +   F D+     A    H+   D+GF+    +R                   
Sbjct: 104 HSPALAGLLPGFVDWC--GQALITGHHVGLDMGFLTRACRRHLGGAPATPCVDTMRLAQA 161

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                         P+    L  L  RYG+       H AL D+   + +++ ++    
Sbjct: 162 WERERWERSFDPFQPTVSYTLADLSARYGLPQFRA--HDALEDALQTAYLFLYLVRKLK 218


>gi|294613939|ref|ZP_06693874.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
 gi|291593214|gb|EFF24788.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
          Length = 1450

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 16/225 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P    +      +      
Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            ++   +AHNA FD+GF+N    R          I     
Sbjct: 481 DEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLEL 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R  L  L K++G++      H A+ D+     +          +      +
Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 592

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
              +  +  + +      KR +P    I    L ++   ++ L K
Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 633


>gi|260205487|ref|ZP_05772978.1| hypothetical protein MtubK8_14429 [Mycobacterium tuberculosis K85]
 gi|289574877|ref|ZP_06455104.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289539308|gb|EFD43886.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
          Length = 645

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%)

Query: 9   KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +V D+ETTG  +        D I EIGAV++   +     F   + P      P+ ++L
Sbjct: 43  FVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRL 100

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT   + + P+  ++   F++     ++  +AHNA FD+GF+ A  +R +     P  
Sbjct: 101 TGITTAMVGNAPTIDAVLPMFFE--FAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQV 158

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +       R         +          ++    H AL D+    DV   ++  
Sbjct: 159 LCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIER 213


>gi|257884340|ref|ZP_05663993.1| DNA polymerase III [Enterococcus faecium 1,231,501]
 gi|257820178|gb|EEV47326.1| DNA polymerase III [Enterococcus faecium 1,231,501]
          Length = 1450

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 16/225 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P    +      +      
Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            ++   +AHNA FD+GF+N    R          I     
Sbjct: 481 DEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLEL 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R  L  L K++G++      H A+ D+     +          +      +
Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 592

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
              +  +  + +      KR +P    I    L ++   ++ L K
Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 633


>gi|218753913|ref|ZP_03532709.1| hypothetical protein MtubG1_10964 [Mycobacterium tuberculosis GM
           1503]
          Length = 493

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%)

Query: 9   KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +V D+ETTG  +        D I EIGAV++   +     F   + P      P+ ++L
Sbjct: 35  FVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRL 92

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT   + + P+  ++   F++     ++  +AHNA FD+GF+ A  +R +     P  
Sbjct: 93  TGITTAMVGNAPTIDAVLPMFFE--FAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQV 150

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +       R         +          ++    H AL D+    DV   ++  
Sbjct: 151 LCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIER 205


>gi|254232344|ref|ZP_04925671.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|289750785|ref|ZP_06510163.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|124601403|gb|EAY60413.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|289691372|gb|EFD58801.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|323719091|gb|EGB28236.1| hypothetical protein TMMG_01471 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 647

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%)

Query: 9   KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +V D+ETTG  +        D I EIGAV++   +     F   + P      P+ ++L
Sbjct: 45  FVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRL 102

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT   + + P+  ++   F++     ++  +AHNA FD+GF+ A  +R +     P  
Sbjct: 103 TGITTAMVGNAPTIDAVLPMFFE--FAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQV 160

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +       R         +          ++    H AL D+    DV   ++  
Sbjct: 161 LCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIER 215


>gi|31793370|ref|NP_855863.1| hypothetical protein Mb2214 [Mycobacterium bovis AF2122/97]
 gi|121638072|ref|YP_978296.1| hypothetical protein BCG_2207 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224990566|ref|YP_002645253.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|31618962|emb|CAD97067.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493720|emb|CAL72195.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224773679|dbj|BAH26485.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 645

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%)

Query: 9   KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +V D+ETTG  +        D I EIGAV++   +     F   + P      P+ ++L
Sbjct: 43  FVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRL 100

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT   + + P+  ++   F++     ++  +AHNA FD+GF+ A  +R +     P  
Sbjct: 101 TGITTAMVGNAPTIDAVLPMFFE--FAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQV 158

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +       R         +          ++    H AL D+    DV   ++  
Sbjct: 159 LCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIER 213


>gi|15609328|ref|NP_216707.1| hypothetical protein Rv2191 [Mycobacterium tuberculosis H37Rv]
 gi|148662008|ref|YP_001283531.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra]
 gi|148823398|ref|YP_001288152.1| hypothetical protein TBFG_12219 [Mycobacterium tuberculosis F11]
 gi|167969416|ref|ZP_02551693.1| hypothetical protein MtubH3_15860 [Mycobacterium tuberculosis
           H37Ra]
 gi|215403581|ref|ZP_03415762.1| hypothetical protein Mtub0_07840 [Mycobacterium tuberculosis
           02_1987]
 gi|215411916|ref|ZP_03420690.1| hypothetical protein Mtub9_11341 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215427566|ref|ZP_03425485.1| hypothetical protein MtubT9_14751 [Mycobacterium tuberculosis T92]
 gi|215431125|ref|ZP_03429044.1| hypothetical protein MtubE_10707 [Mycobacterium tuberculosis
           EAS054]
 gi|215446420|ref|ZP_03433172.1| hypothetical protein MtubT_10948 [Mycobacterium tuberculosis T85]
 gi|219558170|ref|ZP_03537246.1| hypothetical protein MtubT1_13062 [Mycobacterium tuberculosis T17]
 gi|253798744|ref|YP_003031745.1| hypothetical protein TBMG_04035 [Mycobacterium tuberculosis KZN
           1435]
 gi|254551229|ref|ZP_05141676.1| hypothetical protein Mtube_12318 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187187|ref|ZP_05764661.1| hypothetical protein MtubCP_14313 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201308|ref|ZP_05768799.1| hypothetical protein MtubT4_14636 [Mycobacterium tuberculosis T46]
 gi|289443698|ref|ZP_06433442.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289447819|ref|ZP_06437563.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289554022|ref|ZP_06443232.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289570307|ref|ZP_06450534.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289745464|ref|ZP_06504842.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
           02_1987]
 gi|294993576|ref|ZP_06799267.1| hypothetical protein Mtub2_03474 [Mycobacterium tuberculosis 210]
 gi|297634780|ref|ZP_06952560.1| hypothetical protein MtubK4_11686 [Mycobacterium tuberculosis KZN
           4207]
 gi|297731771|ref|ZP_06960889.1| hypothetical protein MtubKR_11808 [Mycobacterium tuberculosis KZN
           R506]
 gi|298525683|ref|ZP_07013092.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|313659105|ref|ZP_07815985.1| hypothetical protein MtubKV_11818 [Mycobacterium tuberculosis KZN
           V2475]
 gi|1722908|sp|Q10384|Y2191_MYCTU RecName: Full=Uncharacterized protein Rv2191/MT2247
 gi|1237044|emb|CAA94260.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148506160|gb|ABQ73969.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra]
 gi|148721925|gb|ABR06550.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|253320247|gb|ACT24850.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289416617|gb|EFD13857.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289420777|gb|EFD17978.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289438654|gb|EFD21147.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289544061|gb|EFD47709.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289685992|gb|EFD53480.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
           02_1987]
 gi|298495477|gb|EFI30771.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|326903805|gb|EGE50738.1| DNA polymerase III [Mycobacterium tuberculosis W-148]
 gi|328458507|gb|AEB03930.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 645

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%)

Query: 9   KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +V D+ETTG  +        D I EIGAV++   +     F   + P      P+ ++L
Sbjct: 43  FVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRL 100

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT   + + P+  ++   F++     ++  +AHNA FD+GF+ A  +R +     P  
Sbjct: 101 TGITTAMVGNAPTIDAVLPMFFE--FAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQV 158

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +       R         +          ++    H AL D+    DV   ++  
Sbjct: 159 LCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIER 213


>gi|15841682|ref|NP_336719.1| hypothetical protein MT2247 [Mycobacterium tuberculosis CDC1551]
 gi|289754299|ref|ZP_06513677.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|308232063|ref|ZP_07414780.2| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis
           SUMu001]
 gi|308369651|ref|ZP_07418557.2| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis
           SUMu002]
 gi|308370940|ref|ZP_07423289.2| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis
           SUMu003]
 gi|308372166|ref|ZP_07427656.2| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis
           SUMu004]
 gi|308373349|ref|ZP_07431961.2| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis
           SUMu005]
 gi|308374520|ref|ZP_07436352.2| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis
           SUMu006]
 gi|308375805|ref|ZP_07668121.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis
           SUMu007]
 gi|308376938|ref|ZP_07668388.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis
           SUMu008]
 gi|308377937|ref|ZP_07480989.2| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis
           SUMu009]
 gi|308379142|ref|ZP_07485216.2| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis
           SUMu010]
 gi|308380293|ref|ZP_07489432.2| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis
           SUMu011]
 gi|308404461|ref|ZP_07493965.2| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis
           SUMu012]
 gi|13881937|gb|AAK46533.1| DNA polymerase III, epsilon subunit, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|289694886|gb|EFD62315.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|308215084|gb|EFO74483.1| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis
           SUMu001]
 gi|308326837|gb|EFP15688.1| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis
           SUMu002]
 gi|308330190|gb|EFP19041.1| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis
           SUMu003]
 gi|308334026|gb|EFP22877.1| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis
           SUMu004]
 gi|308337834|gb|EFP26685.1| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis
           SUMu005]
 gi|308341594|gb|EFP30445.1| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis
           SUMu006]
 gi|308345002|gb|EFP33853.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis
           SUMu007]
 gi|308349313|gb|EFP38164.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis
           SUMu008]
 gi|308354021|gb|EFP42872.1| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis
           SUMu009]
 gi|308357963|gb|EFP46814.1| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis
           SUMu010]
 gi|308361897|gb|EFP50748.1| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis
           SUMu011]
 gi|308365560|gb|EFP54411.1| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis
           SUMu012]
          Length = 637

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%)

Query: 9   KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +V D+ETTG  +        D I EIGAV++   +     F   + P      P+ ++L
Sbjct: 35  FVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRL 92

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT   + + P+  ++   F++     ++  +AHNA FD+GF+ A  +R +     P  
Sbjct: 93  TGITTAMVGNAPTIDAVLPMFFE--FAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQV 150

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +       R         +          ++    H AL D+    DV   ++  
Sbjct: 151 LCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIER 205


>gi|271965325|ref|YP_003339521.1| DNA polymerase III subunit epsilon-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270508500|gb|ACZ86778.1| DNA polymerase III epsilon subunit and related 3'-5'
           exonuclease-like protein [Streptosporangium roseum DSM
           43021]
          Length = 407

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 7/143 (4%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTGL    NDR+IEIG V L    +    +   + P           +HGIT 
Sbjct: 10  YAVIDLETTGLRPSWNDRVIEIGIVHLDLSGEVTGEWATLVNPGRDLGP---QHIHGITA 66

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDT 126
             ++  P+F  I     +  +       AHN  FD GF++ E  +     PLD +  + T
Sbjct: 67  ADIRHAPAFGEIAGAVAERLDG--RVVAAHNLPFDAGFLSHEFGRLGLDTPLDHTAGVCT 124

Query: 127 LSIARRKHPSSRNDLNSLCKRYG 149
           ++ + +  P +   L + C R G
Sbjct: 125 MAWSAQFLPGAPRSLAACCARAG 147


>gi|227550341|ref|ZP_03980390.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium
           TX1330]
 gi|257886431|ref|ZP_05666084.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501]
 gi|227180543|gb|EEI61515.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium
           TX1330]
 gi|257822287|gb|EEV49417.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501]
          Length = 297

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGL   +  I++IGA++     + +R +Q  + P     S    K+ G+  E
Sbjct: 126 YVVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQN-IKPFRSNISKRITKITGLELE 184

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P+F     +   F        +AHNA FD+ F+  +L   N +     R+IDTL 
Sbjct: 185 DVVNMPTFEDFSPQLMSFI--SCYTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLP 242

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +ARR   +  + L +L     +     + H AL D  + + VY
Sbjct: 243 LARRHFETPNHKLITLKDYLNL---DNNSHDALEDCLVTNKVY 282


>gi|307718875|ref|YP_003874407.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
           6192]
 gi|306532600|gb|ADN02134.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
           6192]
          Length = 198

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 8/169 (4%)

Query: 8   RKIV--FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +++V  FD+ETTGLD     ++EI  V+          F + + P       E  K+HGI
Sbjct: 18  KEVVVTFDLETTGLDPVRHSVVEIACVKFQGGEP-RAFFSLLVKPP-HPIPAEVTKIHGI 75

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+ +++ P   S+      F        +AHNA FD+ F+  E  R  +      R ID
Sbjct: 76  GDQDVEEAPPLPSVLPMLESFVGT--HLLVAHNAPFDLSFLRMEYARCGRPYP-GFRAID 132

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           T  +AR   P       +   R  + I  +  H AL D+    D++  +
Sbjct: 133 TRLLARSVLPHLGRYSLASLTRA-LDIPLQHHHRALSDAWACGDLFYAL 180


>gi|241759673|ref|ZP_04757773.1| DNA polymerase III subunit [Neisseria flavescens SK114]
 gi|241319681|gb|EER56077.1| DNA polymerase III subunit [Neisseria flavescens SK114]
          Length = 463

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 67/171 (39%), Gaps = 7/171 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG +S  DRI E+  V       T   ++  + P  R       +L  I DE 
Sbjct: 22  VVVDLETTGGNSYQDRITEVALVRFEQGRTT--HYEQLVNP-CRSIPEFVARLTEIHDET 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+ P F+ I  +         A  +AHN++FD  F+  E  RI+ D    +  + T+ +
Sbjct: 79  VKNAPVFADIAGDLLPLLQG--AVVVAHNSRFDYTFLRHEFARIHTD--FAAPSLCTVQL 134

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +RR +P                 +            L   + + +     Q
Sbjct: 135 SRRLYPEFYKHSLDSIIERTGIQTANRHRAMTDVVALCDYLELSLAEKNHQ 185


>gi|226941443|ref|YP_002796517.1| DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9]
 gi|226716370|gb|ACO75508.1| Probable DNA-directed DNA polymerase III [Laribacter hongkongensis
           HLHK9]
          Length = 493

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG     DRI EIG VE+     T   +   + P G+   P   ++ GI+D 
Sbjct: 6   YVIVDLETTGGHITRDRITEIGLVEVSHGVTT--RWSQLVNP-GQPIPPFIEEMTGISDA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            + + P F+ +        N      IAHNA+FD GF+  E +
Sbjct: 63  MVAEAPPFAELAPALLARLNG--KLLIAHNARFDYGFLKNEFR 103


>gi|150007345|ref|YP_001302088.1| DNA polymerase III subunit epsilon [Parabacteroides distasonis ATCC
           8503]
 gi|255014024|ref|ZP_05286150.1| DNA polymerase III epsilon chain [Bacteroides sp. 2_1_7]
 gi|256839636|ref|ZP_05545145.1| DNA polymerase subunit III epsilon [Parabacteroides sp. D13]
 gi|262382080|ref|ZP_06075218.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_33B]
 gi|298375333|ref|ZP_06985290.1| exonuclease [Bacteroides sp. 3_1_19]
 gi|301310653|ref|ZP_07216592.1| exonuclease [Bacteroides sp. 20_3]
 gi|149935769|gb|ABR42466.1| DNA polymerase III epsilon chain [Parabacteroides distasonis ATCC
           8503]
 gi|256738566|gb|EEU51891.1| DNA polymerase subunit III epsilon [Parabacteroides sp. D13]
 gi|262297257|gb|EEY85187.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_33B]
 gi|298267833|gb|EFI09489.1| exonuclease [Bacteroides sp. 3_1_19]
 gi|300832227|gb|EFK62858.1| exonuclease [Bacteroides sp. 20_3]
          Length = 256

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 69/206 (33%), Gaps = 8/206 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG++   DRI+EI  V++  +  +  +T    + P G    PE+  +HGITDE
Sbjct: 10  VFFDLETTGINIVKDRIVEISYVKVFPNGKEETKT--RRINP-GMPIPPESTAIHGITDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P+F  I           +      N           L+      L+  + ID  +
Sbjct: 67  DVKDCPTFKEIAKSLATQIEGCDLAGYNSNRFDIPMLAEEFLRAGVDIDLNRRKFIDVQT 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I  +          S   ++    S  + H A  D+    +V    +     +       
Sbjct: 127 IFHK----MEQRTLSAAYKFYCNKSLENAHTAEADTLATYEVLKAQLDRYPDLKNDVAFL 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
                           +         
Sbjct: 183 SQYSCYSNNVDFAGRMVYNDKGEEVI 208


>gi|69246860|ref|ZP_00604152.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
           subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257882946|ref|ZP_05662599.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257889275|ref|ZP_05668928.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260560113|ref|ZP_05832291.1| DNA polymerase III [Enterococcus faecium C68]
 gi|293560202|ref|ZP_06676704.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1162]
 gi|314937503|ref|ZP_07844836.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|314942162|ref|ZP_07849016.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|314947498|ref|ZP_07850913.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
 gi|314951485|ref|ZP_07854534.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|314992575|ref|ZP_07857993.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|314995490|ref|ZP_07860590.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|68195041|gb|EAN09504.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
           subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257818604|gb|EEV45932.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257825635|gb|EEV52261.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260073948|gb|EEW62272.1| DNA polymerase III [Enterococcus faecium C68]
 gi|291605874|gb|EFF35306.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1162]
 gi|313590324|gb|EFR69169.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|313592867|gb|EFR71712.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|313596325|gb|EFR75170.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|313599085|gb|EFR77930.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|313643144|gb|EFS07724.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|313646048|gb|EFS10628.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
          Length = 1452

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 16/225 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P    +      +      
Sbjct: 427 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            ++   +AHNA FD+GF+N    R          I     
Sbjct: 483 DGMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLEL 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R  L  L K++G++      H A+ D+     +          +      +
Sbjct: 543 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 594

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
              +  +  + +      KR +P    I    L ++   ++ L K
Sbjct: 595 NMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 635


>gi|257889197|ref|ZP_05668850.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733]
 gi|257825269|gb|EEV52183.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733]
          Length = 295

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGL   +  I++IGA++     + +R +Q  + P     S    K+ G+  E
Sbjct: 124 YVVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQN-IKPFRSNISKRITKITGLELE 182

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P+F     +   F        +AHNA FD+ F+  +L   N +     R+IDTL 
Sbjct: 183 DVVNMPTFEDFSPQLMSFI--SCYTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLP 240

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +ARR   +  + L +L     +     + H AL D  + + VY
Sbjct: 241 LARRHFETPNHKLITLKDYLNL---DNNSHDALEDCLVTNKVY 280


>gi|332525056|ref|ZP_08401237.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
 gi|332108346|gb|EGJ09570.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
          Length = 645

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 8/167 (4%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGL+    D II+IGA  ++      + +F+  + P  R      + +HGIT  
Sbjct: 457 VFDTETTGLEPSAGDEIIQIGATRIVAGKLRRHESFEQLVDPQ-RAIPERTVAIHGITPA 515

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P+   +           +   +AHNA FD+ F+  + +        P      LS
Sbjct: 516 MVAGQPTIREVLPALHA--FAHDTVLVAHNAAFDLRFLELKERAAGVRFDMPVLDTLLLS 573

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                +   R+ L ++ +R G+      +H AL D+ + ++V++KM+
Sbjct: 574 QVLHPN-QERHSLEAIAERLGVP--VLGRHTALGDAIVTAEVFLKMI 617


>gi|116872751|ref|YP_849532.1| DNA polymerase III PolC [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123466238|sp|A0AIC1|DPO3_LISW6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116741629|emb|CAK20753.1| DNA polymerase III [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 1444

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F +     +   +AHNA FD+GFIN   +++  +  D + +     
Sbjct: 486 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKADNAVVDTLEL 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L K++   I     H A+ D+   + +  K++    +++     +
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDINFHD 601

Query: 189 EDRFFKEEKKTVPNISLL 206
               +  E          
Sbjct: 602 SLNDYMGEGDAYKRARPF 619


>gi|256617164|ref|ZP_05474010.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|256596691|gb|EEU15867.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
          Length = 1440

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 72/199 (36%), Gaps = 8/199 (4%)

Query: 9   KIVFDIETT-GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD+ETT GL +  D IIE+ AV++   +    TF+ F+ P    +      ++    
Sbjct: 414 YVVFDVETTTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGI 469

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                + S S            +    +AHNA FD+GF+N    +          I    
Sbjct: 470 TDEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLE 529

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFK 186
                      + LN+L K++G+       H A+ DS       +I +       +  F 
Sbjct: 530 LSRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFH 587

Query: 187 TNEDRFFKEEKKTVPNISL 205
            + +R   E          
Sbjct: 588 DDLNRHIGEGDSYKRARPF 606


>gi|239986791|ref|ZP_04707455.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           11379]
 gi|291443743|ref|ZP_06583133.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
 gi|291346690|gb|EFE73594.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 343

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 80/211 (37%), Gaps = 10/211 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L         +   + P      P  + +HG+T +
Sbjct: 21  YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNPER---DPGPVWIHGLTSD 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  +  E      +     +AHNA FD   I  E  R +       R+     
Sbjct: 77  VLEGAPLFPEVAEELSARLAD--RVLVAHNAAFDWSMIAREYARASVVAPVEQRLCTIAL 134

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
               + P   + L SL   +G+    +  H AL D+ +L++ +   +   ++        
Sbjct: 135 AKELRLPLPNHKLASLAAHFGVV--QQQAHHALDDARVLAEAFRPSLHAAARGGVRLPLL 192

Query: 189 EDRFFKEEKKT--VPNISLLKRDKPLFTRIT 217
           E R   E   +   P +      +P   R +
Sbjct: 193 ECRPLTEWSDSPVTPRVGYRAVRQPNSWRPS 223


>gi|239940309|ref|ZP_04692246.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 341

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 80/211 (37%), Gaps = 10/211 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L         +   + P      P  + +HG+T +
Sbjct: 19  YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNPER---DPGPVWIHGLTSD 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  +  E      +     +AHNA FD   I  E  R +       R+     
Sbjct: 75  VLEGAPLFPEVAEELSARLAD--RVLVAHNAAFDWSMIAREYARASVVAPVEQRLCTIAL 132

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
               + P   + L SL   +G+    +  H AL D+ +L++ +   +   ++        
Sbjct: 133 AKELRLPLPNHKLASLAAHFGVV--QQQAHHALDDARVLAEAFRPSLHAAARGGVRLPLL 190

Query: 189 EDRFFKEEKKT--VPNISLLKRDKPLFTRIT 217
           E R   E   +   P +      +P   R +
Sbjct: 191 ECRPLTEWSDSPVTPRVGYRAVRQPNSWRPS 221


>gi|313633403|gb|EFS00239.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri FSL N1-067]
          Length = 1452

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 436 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 493

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F +     +   +AHNA FD+GFIN   +++     + + +     
Sbjct: 494 MVKGSDPIDVVLKRFKE--WSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLEL 551

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L K++   I     H A+ D+   + +  K++    +++     +
Sbjct: 552 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLGWKLIKDAKEMHDIDYHD 609

Query: 189 EDRFFKEEKKTVPNISLL 206
               +  E          
Sbjct: 610 SLNDYMGEGDAYKRARPF 627


>gi|257897430|ref|ZP_05677083.1| DNA polymerase subunit III [Enterococcus faecium Com12]
 gi|257833995|gb|EEV60416.1| DNA polymerase subunit III [Enterococcus faecium Com12]
          Length = 291

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGL   +  I++IGA++     + +R +Q  + P     S    K+ G+  E
Sbjct: 124 YVVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQN-IKPFRSNISKRITKITGLELE 182

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P+F     +   F        +AHNA FD+ F+  +L   N +     R+IDTL 
Sbjct: 183 DVVNMPTFEDFSPQLMSFI--SCYTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLP 240

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +ARR   +  + L +L     +     + H AL D  + + VY
Sbjct: 241 LARRHFETPNHKLITLKDYLNL---DNNSHDALEDCLVTNKVY 280


>gi|220926351|ref|YP_002501653.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
 gi|219950958|gb|ACL61350.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
          Length = 296

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 65/231 (28%), Gaps = 17/231 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT------FQVFLCPNGRKNSPEALKLHG 64
           + D ETTGLD   D +IE+G +       + R       F     P  R    E  +L G
Sbjct: 43  ILDTETTGLDPAADEVIELGIIAFTYG-PSGRIHRVRHRFNQLQQP-ARPIPEEVTRLTG 100

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD  +  +           +    +    IAHNA+FD     A            S   
Sbjct: 101 ITDADVAGRRI----DDRAVEALAARARVVIAHNARFDRRMCEARWPVFAGLNWACSCHQ 156

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-----VYIKMMVGGS 179
                   +       L      +    +       L                 +M    
Sbjct: 157 IPWREEGHEAARLGGLLADHGYFHNGHRAIDDCEALLWLLARPLKRSGRLALATLMEAAR 216

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           +       ++  F  +++    N     R +  +  + + +L+     +  
Sbjct: 217 RPTVRLWASDAPFALKDRLKDRNYRWSSRRRCWYIDLDEAQLEIERSFLSR 267


>gi|16800425|ref|NP_470693.1| DNA polymerase III PolC [Listeria innocua Clip11262]
 gi|21263558|sp|Q92C34|DPO3_LISIN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16413830|emb|CAC96588.1| polC [Listeria innocua Clip11262]
 gi|313619136|gb|EFR90925.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           innocua FSL S4-378]
          Length = 1444

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +  +F +     +   +AHNA FD+GFIN   +++  +    + +     
Sbjct: 486 MVKGSDPIDVVLKQFRE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAKNAVVDTLEL 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L K++   I     H A+ D+   + +  K++    +++     +
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIEFHD 601

Query: 189 EDRFFKEEKKTVPNISLL 206
               +  E          
Sbjct: 602 SLNDYMGEGDAYKRARPF 619


>gi|313638095|gb|EFS03362.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri FSL S4-171]
          Length = 1444

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F +     +   +AHNA FD+GFIN   +++     + + +     
Sbjct: 486 MVKGSDPIDVVLKRFKE--WSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLEL 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L K++   I     H A+ D+   + +  K++    +++     +
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLGWKLIKDAKEMHDIDYHD 601

Query: 189 EDRFFKEEKKTVPNISLL 206
               +  E          
Sbjct: 602 SLNDYMGEGDAYKRARPF 619


>gi|289434601|ref|YP_003464473.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170845|emb|CBH27387.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 1444

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F +     +   +AHNA FD+GFIN   +++     + + +     
Sbjct: 486 MVKGSDPIDVVLKRFKE--WSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLEL 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L K++   I     H A+ D+   + +  K++    +++     +
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLGWKLIKDAKEMHDIDYHD 601

Query: 189 EDRFFKEEKKTVPNISLL 206
               +  E          
Sbjct: 602 SLNDYMGEGDAYKRARPF 619


>gi|25011356|ref|NP_735751.1| hypothetical protein gbs1312 [Streptococcus agalactiae NEM316]
 gi|24412894|emb|CAD46971.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 604

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 6/212 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R I FDIET GL+S+ DRI+E+GAV   +      +++  +       S +  +
Sbjct: 46  INFIKNRFIAFDIETPGLNSQQDRIVEVGAVLFENGKVV-DSYESLVN-AKVNISADVTR 103

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAE-LQRINKDP 117
           L+ IT+  +K+ PS + ++ E  +F  +         AHNAKFD+GF+     +      
Sbjct: 104 LNNITNRMIKNAPSENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLGYNGE 163

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +     +       +   + + +  +         SHR+K  A++  ++L+ ++  +   
Sbjct: 164 IKYLDTLSLSRKNVKGLRNYKQNTVAEYFNLQNKNSHRAKSDAIICGNILTKLFFIIENQ 223

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
            S+ +F  K N+    + E   V    + +R 
Sbjct: 224 KSRKSFSSKNNKISPEELEVCAVIQNIIFERK 255


>gi|77407162|ref|ZP_00784150.1| exonuclease, putative [Streptococcus agalactiae H36B]
 gi|77174231|gb|EAO77112.1| exonuclease, putative [Streptococcus agalactiae H36B]
          Length = 124

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
          I   K R I FDIETTGL+S+ DRI+E+GAV   +      +++  + 
Sbjct: 46 INFIKNRFIAFDIETTGLNSQQDRIVEVGAVLFENGKVV-DSYESLVN 92


>gi|125625168|ref|YP_001033651.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493976|emb|CAL98973.1| DNA polymerase III alpha subunit [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071977|gb|ADJ61377.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 1635

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 69/195 (35%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +  +  F  F+ P  R +           D 
Sbjct: 593 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINPGYRLSEFTTELTGITDDH 651

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
               KP +  +          +    +AHNA FDVGF+N    R     +       ++ 
Sbjct: 652 VKNAKPLYEVLTKFQK---FCEGTILVAHNASFDVGFMNMNYSRNGLPIISQPVVDTLEF 708

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                 +         +   + G+   H +   A     LL     ++    +      +
Sbjct: 709 ARNLYPEMKRFGLGQLTKKFQIGLEHHHMANFDAEATGRLLFVFLEELRTRNTGWTSLLE 768

Query: 187 TNEDRFFKEEKKTVP 201
            N     ++  K V 
Sbjct: 769 LNAKLVSEDSYKKVR 783


>gi|163845121|ref|YP_001622776.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445]
 gi|163675844|gb|ABY39954.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 332

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 23/234 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEIARITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +K +           D    +    IAHNA FD  F+    +R++    +      
Sbjct: 134 TDEMVKGRTIPRDEL----DALIAEADIIIAHNAGFDRPFL----ERLSIAFANKPWACS 185

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178
              I           L  L  + G   +             +          + +++   
Sbjct: 186 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 245

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
            +           F  ++               R K  +T + ++EL+   + +
Sbjct: 246 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 299


>gi|29840147|ref|NP_829253.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC]
 gi|29834495|gb|AAP05131.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC]
          Length = 228

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 7/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG     DRIIEI A      + T ++F  ++ P       EA K+HGIT   
Sbjct: 5   IFYDTETTGTQIDKDRIIEIAAY----NNVTKQSFVTYVNPE-IPIPEEASKIHGITTST 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P F   + +F DF   +      +N  FD   +  E +R + +PL    I      
Sbjct: 60  VSSAPKFPEAYKQFCDFCGNEAILVAHNNDSFDFPLLEKECRRHSLEPLSLRTIDSLKWA 119

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            + +    +++L  L + YG        H AL D   L +V+  ++  
Sbjct: 120 QKYRPDLPKHNLQYLRQVYGFA--ENQAHRALDDVITLYNVFSALIGD 165


>gi|293402030|ref|ZP_06646169.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304422|gb|EFE45672.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 1443

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 6/228 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL S+ D IIE G   + D +   ++ Q+F+ P     S    +L  I++E
Sbjct: 396 YCVFDLETTGLSSRFDHIIEFGGQIMKDRTCI-KSLQLFVKPPIA-LSAFTTELTNISEE 453

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+   F+    E  +F  +  +  +AHNA FD GF+NAEL+RI + PL  + +IDTL 
Sbjct: 454 NMKNAKPFAECVDEILEFIGD--SILVAHNASFDYGFLNAELERIGRKPL-MNPVIDTLD 510

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-FGFKT 187
           +AR         L +L ++YGI       H A  D+ +L+ V++ M+     I       
Sbjct: 511 LARSMMDRKGYRLGNLARQYGIRYDEDVAHRADYDAEVLAQVFMHMLNDLKHIKTLKQLQ 570

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           +        K    ++++L ++      + +     H + +    K+ 
Sbjct: 571 DMQDPDCFNKVRDKHVTILAKNMAGLKELFELITLSHTEYLSYNRKST 618


>gi|269956916|ref|YP_003326705.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305597|gb|ACZ31147.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 547

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 7/173 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL  + DR+IE+  + L    +T   +   L P     +  A  +HGITD 
Sbjct: 49  FAVVDVETTGLSPRYDRVIEVAILRLDTNGRTVDEWSTRLNPQR---TVGATWIHGITDA 105

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   PSF+ + ++         A ++ HNA+FD GF+ AEL R   D  +P+      +
Sbjct: 106 DVAHAPSFADVAAQVAQRLTG--AVFVGHNARFDAGFVLAELTRAGWDAPEPTIWCTQAA 163

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                  +S   L  +    GI  T +H +   A   + +L+           
Sbjct: 164 SHHWLPDASSRRLVDVAAAAGISLTHAHSALGDARATAAMLTRYIGASTGVDR 216


>gi|304403858|ref|ZP_07385520.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus
           YK9]
 gi|304346836|gb|EFM12668.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus
           YK9]
          Length = 244

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 56/176 (31%), Gaps = 6/176 (3%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITD 67
           IVFD+ETTG      D II  GAV +         +F   + P  R+      +L GIT+
Sbjct: 61  IVFDLETTGFYPYNGDEIISFGAVLVKGDEIFEDVSFYSLVNPK-RRIPMHITQLTGITN 119

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++  P    +  +F +F   +                                 +   
Sbjct: 120 EMVEGAPDLMQVLHDFMEFVGRRILLAHGSGHDKQFLNAALWRTSKVNLTHRLLDTMMVA 179

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                K P                I    +H AL DS + + +++  +    + N 
Sbjct: 180 KWLEPKRPDGYGLDE---LLESANIPIADRHHALKDSIMTAKLWMAYLKKIQERNI 232


>gi|116694719|ref|YP_728930.1| exconuclease [Ralstonia eutropha H16]
 gi|113529218|emb|CAJ95565.1| Exconuclease [Ralstonia eutropha H16]
          Length = 528

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 6/105 (5%)

Query: 8   RKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IVF D+ETTG D++ DRI EIG VE+         +   L P G    P   ++ GIT
Sbjct: 28  RPIVFVDLETTGADAQRDRITEIGVVEVGPDGII--EWDTLLDP-GMSIPPFIQRMTGIT 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           +E ++ +PSF S+     +        ++AHNA+FD GF+    +
Sbjct: 85  EEMVRGQPSFESLAESLAERLQG--RLFVAHNARFDYGFLKNAFR 127


>gi|111018139|ref|YP_701111.1| hypothetical protein RHA1_ro01126 [Rhodococcus jostii RHA1]
 gi|110817669|gb|ABG92953.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
          Length = 588

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 62/167 (37%), Gaps = 4/167 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG     D I EIGAV++             + P GR   P  +++ GIT  
Sbjct: 24  FVVVDLETTGARPGEDAITEIGAVKIRGGEVIAEM-ATLVDP-GRSIPPHIVEITGITTA 81

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P    +   F +    + A  +AHNA FD GF+ A     +      + +     
Sbjct: 82  MVIDAPRIERVLPAFLE--FARGAVLVAHNAPFDTGFLKAAASATDTPWPKFTVLCTVKL 139

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R         +          +     H AL D+    DV   ++
Sbjct: 140 ARRVLSRDEAPSVKLSSLARLFDVGTTPTHRALDDARATVDVLHALI 186


>gi|315282169|ref|ZP_07870636.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           marthii FSL S4-120]
 gi|313614186|gb|EFR87863.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           marthii FSL S4-120]
          Length = 1367

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 427 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F +     +   +AHNA FD+GFIN   +++  +  + + +     
Sbjct: 485 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L K++   I     H A+ D+   + +  K++    +++     +
Sbjct: 543 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDFHD 600

Query: 189 EDRFFKEEKKTVPNISLL 206
               +  E          
Sbjct: 601 SLNDYMGEGDAYKRARPF 618


>gi|162447117|ref|YP_001620249.1| DNA polymerase III subunit alpha [Acholeplasma laidlawii PG-8A]
 gi|161985224|gb|ABX80873.1| DNA polymerase III alpha subunit [Acholeplasma laidlawii PG-8A]
          Length = 1504

 Score = 66.5 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 67/183 (36%), Gaps = 18/183 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTG     D+IIEI A ++       R F+V + P  +  S    ++  ITDE +
Sbjct: 414 VFDIETTGFSFTRDKIIEIAAYKVRGGFIAER-FEVLINPEEQ-LSETTKRITNITDEMV 471

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +++ +   +   F +F           +      +  + L  +  +P      ++     
Sbjct: 472 ENEKTIEEVLPTFLEFIKGTVLVAHNASFDIGFIYEKSRLLGLQHEPFAVIDTLNIARYF 531

Query: 131 RRKHPSSRNDLNSLCKRYGITI----------------SHRSKHGALLDSHLLSDVYIKM 174
                  +N         G                   +  + H A+ D++  ++V++ M
Sbjct: 532 YNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLEAHHRAIYDAYATAEVFLNM 591

Query: 175 MVG 177
           +  
Sbjct: 592 LQD 594


>gi|116513078|ref|YP_811985.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris SK11]
 gi|116108732|gb|ABJ73872.1| DNA polymerase III catalytic subunit, PolC type [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 1635

 Score = 66.5 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 69/195 (35%), Gaps = 6/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +  +  F  F+ P  R +           D 
Sbjct: 593 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINPGYRLSEFTTELTGITDDH 651

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
               KP +  +          +    +AHNA FDVGF+N    R     +       ++ 
Sbjct: 652 VKNAKPLYEVLTKFQK---FCEGTILVAHNASFDVGFMNMNYSRNGLPIISQPVVDTLEF 708

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                 +         +   + G+   H +   A     LL     ++    +      +
Sbjct: 709 ARNLYPEMKRFGLGQLTKKFQIGLEHHHMANFDAEATGRLLFVFLEELRTRNTGWTSLLE 768

Query: 187 TNEDRFFKEEKKTVP 201
            N     ++  K V 
Sbjct: 769 LNAKLVSEDSYKKVR 783


>gi|239932092|ref|ZP_04689045.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291440458|ref|ZP_06579848.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291343353|gb|EFE70309.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
          Length = 327

 Score = 66.5 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 72/190 (37%), Gaps = 8/190 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+      L    +    +   + P      P  + +HG+T E
Sbjct: 23  YAVVDVETTGL-ARDDRIVSAAVYRLDARGEVEDHWYTVVNPER---DPGPVWIHGLTSE 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  +  EF           +AHNA FD   I  E  R   +     R+     
Sbjct: 79  ALEGAPLFRDVAEEFATRLEG--RVLVAHNAVFDWQMIAREYARARSEAPVKQRLCTIAL 136

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                 P   + L SL   +G+       H AL D+ +L++ +   +   +        +
Sbjct: 137 SKELGLPLPNHKLESLAAHFGVVQRRA--HHALDDARVLAEAFRPSLRAAAASGVRLPLH 194

Query: 189 EDRFFKEEKK 198
           E R   E   
Sbjct: 195 ECRPLTEWTD 204


>gi|300933403|ref|ZP_07148659.1| exonuclease, RNase T and DNA polymerase III [Corynebacterium
           resistens DSM 45100]
          Length = 1144

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/127 (31%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+ETTG   K DR+IEIG V L       RT++  + PN R      +  H +T 
Sbjct: 6   RYAVIDLETTGFS-KTDRVIEIGVVLLDQAGNVERTWETIVQPN-RDIPNSFV--HKLTP 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L   P F  I  E  +         IAHNA FD+ F+ +E +RI          +   
Sbjct: 62  SHLVHAPLFEEIAEELAE--ILHGRTIIAHNAPFDIRFLTSEFERIGVALPAYGAWVHDT 119

Query: 128 SIARRKH 134
               R+ 
Sbjct: 120 LPLCRQC 126


>gi|330718588|ref|ZP_08313188.1| Rad3-related DNA helicase [Leuconostoc fallax KCTC 3537]
          Length = 798

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 70/211 (33%), Gaps = 8/211 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M+  N    +V D+ETTG    +  RII+IG   +         F+ F+ P G+    + 
Sbjct: 4   MMNAND-SFVVVDLETTGQSVDRGGRIIQIGMTFIKKRKIV-DHFETFVNP-GQLIDRQI 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L  I+   ++  P F  I         +        N  +       E   ++   + 
Sbjct: 61  QQLTHISQNEVQHAPYFEEIAPVIHTLLKDSVIIAHNVNFDYPYLNEEFERAGLSPLDIP 120

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               +    I     P  R    +      + I   + H A  D+H  +++++ +     
Sbjct: 121 AIDTVMLSQILLPTAPGYRLVDLTQY----LDIKLSNAHRANEDAHATAELFLSLWRLAE 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
           Q+         +   +  +       L R K
Sbjct: 177 QLPAQTLQQLQQGQWQLLRQTQAFLQLVRPK 207


>gi|218134802|ref|ZP_03463606.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990187|gb|EEC56198.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC
           43243]
          Length = 237

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 4/98 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG +   DRIIE+GA ++      +  F  F+ P     SP    L GITDE
Sbjct: 5   YVAIDLETTGTNPAEDRIIEVGAAKVECGRVVS-IFSTFVNPQ-ISISPRITSLTGITDE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
            +   P  + I ++       ++   + HN  FD  FI
Sbjct: 63  DVAGAPVIADIIADMIA--YTKDVPILGHNVIFDYSFI 98


>gi|86142317|ref|ZP_01060827.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella
           blandensis MED217]
 gi|85831069|gb|EAQ49526.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella
           blandensis MED217]
          Length = 257

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 9/214 (4%)

Query: 2   IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           +  N  R I  FD+ETTG++   DRI+EI  +++L +  +   T+   + P      PE 
Sbjct: 1   MNLNLTRPICFFDLETTGINVAKDRIVEISVLKVLPNGKEEKHTW--LVNP-TIPIPPET 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGI DE + DKP+F  + +E  +   + +      N           L+      + 
Sbjct: 58  TAVHGIKDEDVADKPTFKELANEIHNLIKDSDLAGFNSNRFDIPLLAEEMLRAEVDFDMK 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               ID  +I  +          S   ++    +    H A  D+    +V    +    
Sbjct: 118 NRNAIDVQTIFHK----MEQRTLSAAYKFYCDQTLEDAHSAEADTIATYEVLKSQLDRYE 173

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
            +    K+  +   +++           +D    
Sbjct: 174 DLENNMKSLAEFSARKKFADFAGFIAFNKDGEEV 207


>gi|326692531|ref|ZP_08229536.1| Rad3-related DNA helicase [Leuconostoc argentinum KCTC 3773]
          Length = 801

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 7/174 (4%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+ETTG   ++  RII+IG   + +       F+ F+ P G+       +L  I++
Sbjct: 7   FVVVDLETTGQSVARGGRIIQIGMTFIKNRRIV-DHFESFVNP-GQPIDRNIQQLTHISE 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++D P F  I     +   +     IAHN  FD  ++N EL R     L+   I    
Sbjct: 65  KDVRDAPYFEEIVPVLRNMLQD--TVLIAHNINFDYPYLNDELARTGFPVLNNPAIDTVQ 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                   +    L  L     IT    + H A  D+   + +++K+     Q+
Sbjct: 123 LAQILLPTAPGYRLLDLTTFLNIT--LNNAHRANADAQATALLFLKLWQKAEQL 174


>gi|313672733|ref|YP_004050844.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939489|gb|ADR18681.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 195

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 8/186 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT--NRTFQVFLCPNGRKNSPEALKLHGI 65
            IV D+ETTG+   K  +I+EI A+++    K     +F   + P        A ++H I
Sbjct: 11  FIVIDLETTGISPYKGAKIVEIAALKIEKGLKINPKNSFYSLVNP-LIPIPYSAYRVHKI 69

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++E +KD P+   +  +F +F +         N  FD  FI       N    +   I  
Sbjct: 70  SNEIVKDYPTIEKVLPKFLEFLDTPFII--GQNISFDYSFIKYFSDLYNFRLKEFIIIDT 127

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRS--KHGALLDSHLLSDVYIKMMVGGSQINF 183
                +      R +L++L   +GI     +  +H A  D +  + ++IK +        
Sbjct: 128 INIAKKIAPNLKRYNLDNLITYFGIENILGNGKRHRADFDIYATALIFIKSIEIIENYKI 187

Query: 184 GFKTNE 189
             K ++
Sbjct: 188 DLKISD 193


>gi|325847082|ref|ZP_08169908.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481054|gb|EGC84099.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 1010

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 7/182 (3%)

Query: 15  ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP 74
           ETTGL   +D+I EIGAV++ +   T   F   + P  +    + ++L GIT+E + DKP
Sbjct: 2   ETTGLYKYSDKITEIGAVKVENGEIT-EVFNELVNPE-KMIPEKVVELTGITNEMVMDKP 59

Query: 75  SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH 134
               I  +F +    ++A ++  N  FD+GF+       N         +DTL +AR   
Sbjct: 60  KIDEILPKFLE--FSKDAYFVGQNTDFDIGFVK--EACDNLSYQFEPIYLDTLPMARAVF 115

Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFK 194
           PS          +  + +   + H A  D+   + V+IK+       N     ++    K
Sbjct: 116 PSMGRFSLDKLAKK-LAVGPFNHHRASDDAMTTAKVFIKLFEKIKDKNKDLSLSKINSIK 174

Query: 195 EE 196
            +
Sbjct: 175 TK 176


>gi|254821932|ref|ZP_05226933.1| hypothetical protein MintA_18512 [Mycobacterium intracellulare ATCC
           13950]
          Length = 323

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +V D+ETTG  +K+      D I EIGAV++         F   + P  R   P+ ++L
Sbjct: 17  FVVVDLETTGGRTKSAAGTEPDAITEIGAVKVRGGVVLGE-FATLIDPQ-RSIPPQVVRL 74

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            GIT   + D P+  ++   F +F      A  +AHNA FD+GF+ A  QR +     P 
Sbjct: 75  TGITTAMVSDAPTIDAVLPMFLEFARLDQGAVLVAHNAGFDIGFLRAAAQRCDIAWPRPQ 134

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +       R         +          ++ +  H AL D+    DV   ++  
Sbjct: 135 VLCTVRLARRVLSREEAPSVRLASLARLFAVTTQPTHRALDDARATVDVLHALIER 190


>gi|311742833|ref|ZP_07716641.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM
           15272]
 gi|311313513|gb|EFQ83422.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM
           15272]
          Length = 569

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 5/111 (4%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG    K  RI EIGAV +         FQ  + P+          L GITD+ 
Sbjct: 34  VVDLETTGGSPQKGSRITEIGAVLVRGGEVLGE-FQTLVNPD-ESIPAFITVLTGITDQM 91

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +   P  +     F +    + +  +AHNA FD GF+      +       
Sbjct: 92  VVQAPRIAEALPSFLE--FARGSVLVAHNAPFDTGFLRHAAAELQIPWPRF 140


>gi|308069470|ref|YP_003871075.1| DnaQ family exonuclease/DinG family helicase, [Paenibacillus
           polymyxa E681]
 gi|305858749|gb|ADM70537.1| DnaQ family exonuclease/DinG family helicase, putative
           [Paenibacillus polymyxa E681]
          Length = 955

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 6/194 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  V D ETTG  S +D II++G   +   +  +R +  ++ P GR   P    L GIT
Sbjct: 1   MKFAVLDFETTGTQSADD-IIQVGLAIIDHDNSISRVYGSYVNP-GRSIPPFITGLTGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +KD P+   +  E     ++     + HN  FD  F+   L R         RI+DT
Sbjct: 59  DDDVKDAPALEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYL-PFSGRILDT 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +   +   PS  +               R  H A  D+   ++V++K +     +     
Sbjct: 116 MDFLKIMFPSLSSYQLGFVSSEFELAHDRP-HQADSDALATAEVFLKCLGELQALPLITI 174

Query: 187 TNEDRFFKEEKKTV 200
                 F EE   +
Sbjct: 175 QRLSDLFAEEDSDL 188


>gi|297621916|ref|YP_003710053.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044]
 gi|297377217|gb|ADI39047.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044]
          Length = 249

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 81/227 (35%), Gaps = 11/227 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + +  D ETTGLD K DR+IE+  V      K    F+  + P  R     ++ +H I
Sbjct: 6   KQQFVCLDCETTGLDPKEDRVIEVACVAFTLEEKL-DAFETLIDPE-RDIPETSIAIHHI 63

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + +  KP    +  +  DF               +    ++  +      L  +  ID
Sbjct: 64  TQKMVAGKPKVKEVLPKVLDFVGSHIIVGHGIQFDIEA-ISHSCDRAGISKNLRDNPFID 122

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-FG 184
           TL +AR    S  N L  L K + I       H A+ D  +  +V+ +++ G S +    
Sbjct: 123 TLRMARLYGESPINSLEHLRKHFNIESEIA--HRAMSDVMVNIEVFKQLLKGYSSLKQLN 180

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
               +    KE           K     + R        H    Q L
Sbjct: 181 KILAKPIMLKEMPLGKHKGRPFKEIPVQYLR-----WAAHQDFDQDL 222


>gi|258615946|ref|ZP_05713716.1| DNA polymerase III PolC [Enterococcus faecium DO]
          Length = 663

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 16/225 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P    +      +      
Sbjct: 427 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            ++   +AHNA FD+GF+N    R          I     
Sbjct: 483 DGMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLEL 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R  L  L K++G++      H A+ D+     +          +      +
Sbjct: 543 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 594

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
              +  +  + +      KR +P    I    L ++   ++ L K
Sbjct: 595 NMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 635


>gi|157866092|ref|XP_001681752.1| mitochondrial DNA polymerase I protein B [Leishmania major strain
           Friedlin]
 gi|68125051|emb|CAJ02395.1| putative mitochondrial DNA polymerase I protein B [Leishmania major
           strain Friedlin]
          Length = 1429

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 6/159 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FDIETTGL+   D I+E+    + D  + N TF   + P  R  +P  + +H IT+
Sbjct: 763 RVVFFDIETTGLNPSTDAIVEVA---MFDPIE-NSTFHTLVNPQ-RPITPRTVGIHHITN 817

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++D P+   +      +    +      +    +   N                    
Sbjct: 818 AMVRDAPTVDVVAKSIGQYLRL-DKASYNPHEILVLVGHNVFSVDEPMLRRALECHAPEC 876

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            +       S   LN+        +  +  +  L+D+  
Sbjct: 877 QLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALA 915


>gi|86134050|ref|ZP_01052632.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
 gi|85820913|gb|EAQ42060.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
          Length = 275

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 71/199 (35%), Gaps = 8/199 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG++   DRI+EI  +++  + +K ++T+   + P   +    A  +HGIT+E
Sbjct: 10  VFFDLETTGVNIATDRIVEISILKVFPNGNKESKTW--LVNPE-IEIPQGATDVHGITNE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P+F  +  +  +     +      N            + + +  +D         
Sbjct: 67  KVVTEPTFKELAGKVSEMIAGCDLAGFNSNRFDI----PLLAEELMRAGIDFDMQNRKAI 122

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +           S   ++         HGA  D++   ++ +  +     I       
Sbjct: 123 DVQVIFHKKEQRTLSAGYQFYCGKELEGAHGAEADTNATYEILLAQVEKYDDIGNSVDAL 182

Query: 189 EDRFFKEEKKTVPNISLLK 207
            +     ++       L  
Sbjct: 183 SEFSTHGKRADFAGFILFN 201


>gi|323489901|ref|ZP_08095123.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2]
 gi|323396408|gb|EGA89232.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2]
          Length = 202

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 9/164 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +V D ETTGL   ND+II+IGAV+ +++ +   T  + + P  R  S    ++ GIT+
Sbjct: 41  NYVVLDFETTGLRPGNDKIIQIGAVKYVNHER-EETMYLMVNPQ-RSISNTITRITGITN 98

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +++ P    I  +   F  +     IAHNA FD+GF+ A               +   
Sbjct: 99  KDVENAPVIEDIAHDLITFIGD--LPIIAHNAPFDMGFLYALEDITPIPEYTVIDTVKLA 156

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             A  + P+ +    +              H AL D    + +Y
Sbjct: 157 RKAITQTPNHKLTTLTA-----FLKLEHDAHDALGDCLATAAIY 195


>gi|237755791|ref|ZP_04584393.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692054|gb|EEP61060.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 203

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            + FD ETTGL+ K D I+ I AV++  +    N  F V + P+                
Sbjct: 34  YVAFDTETTGLNPKVDDILSIAAVKIKDNKILLNERFNVIVRPDREIIEDAIKIHGLRKK 93

Query: 68  EFLKDKP 74
           +     P
Sbjct: 94  DLESGIP 100


>gi|89098849|ref|ZP_01171730.1| hypothetical protein B14911_05299 [Bacillus sp. NRRL B-14911]
 gi|89086525|gb|EAR65645.1| hypothetical protein B14911_05299 [Bacillus sp. NRRL B-14911]
          Length = 243

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 6/170 (3%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63
           +M  IV DIETTG    + D II IGAV++ + +   ++ F   +    +  SP+  +L 
Sbjct: 56  RMEAIVMDIETTGFFPDQGDEIISIGAVKIENGTINEDKKFYSLIRYE-KTLSPQIEQLT 114

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G+    LK+ P    +  EF+ F   +     AH+A+ +  F+     +  K PL    I
Sbjct: 115 GLRGSQLKEAPPLPEVLIEFFKFCEARTII--AHHARHEKSFLQNASWKHFKAPLKHRII 172

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL-LSDVYI 172
             +      +   +   L  LC   GI +  R            L   YI
Sbjct: 173 DTSFLYRIAEPELNLQRLEDLCSHNGIPVMERHHALEDARLAAELWCCYI 222


>gi|188997445|ref|YP_001931696.1| Exonuclease RNase T and DNA polymerase III [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188932512|gb|ACD67142.1| Exonuclease RNase T and DNA polymerase III [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 203

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            + FD ETTGL+ K D I+ I AV++  +    N  F V + P+   N            
Sbjct: 34  YVAFDTETTGLNPKVDDILSIAAVKIKDNKILLNERFNVIVKPDREINEDVIKIHGLRKK 93

Query: 68  EFLKDKP 74
           +     P
Sbjct: 94  DLESGIP 100


>gi|56963998|ref|YP_175729.1| DNA polymerase III PolC [Bacillus clausii KSM-K16]
 gi|56910241|dbj|BAD64768.1| DNA polymerase III alpha subunit PolC [Bacillus clausii KSM-K16]
          Length = 1430

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 6/189 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + IIE+ AV++ +      T++ F  P     S   ++L GITD+
Sbjct: 416 YVVFDVETTGLSAVYNTIIELAAVKIKNGEII-DTYESFADPK-EPLSATIIELTGITDD 473

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P  + +  +F +     NA  +AHNA FD+GF+N   +++    +    I     
Sbjct: 474 MVQGAPEPAEVLKQFRE--FAGNATLVAHNASFDIGFLNVGYKKLGFSEVTNPVIDTLEL 531

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+LCK++   I   S H A+ D+   + +  KM+   ++    +   
Sbjct: 532 GRFLYPELKNHRLNTLCKKF--DIELVSHHRAIYDTQATAYLLWKMVKDAAEKEIVYHDE 589

Query: 189 EDRFFKEEK 197
            +    +  
Sbjct: 590 LNNHMGQGN 598


>gi|124265242|ref|YP_001019246.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
 gi|124258017|gb|ABM93011.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
          Length = 208

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 69/170 (40%), Gaps = 6/170 (3%)

Query: 7   MRKI-VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M  I V D ETTG+   +  R  EI AV +       R +Q  +  +G    P   +L G
Sbjct: 1   METIAVIDFETTGISPGQGARATEIAAVLVRGGQIVGR-YQSLMN-SGAWVPPFIEQLTG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I++  L+  P    +  E  D         +AHNA FD GF  AE  R   D        
Sbjct: 59  ISNRMLERAPPAERVMREVLD--FTAGCPLVAHNAAFDRGFWQAERARAGCDEDAAHAFA 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            TL +ARR +P + N       +          H AL D+   + + ++M
Sbjct: 117 CTLLLARRLYPEAPNHRLGTLAKLHALPDGGRAHRALADAETAAHLLLRM 166


>gi|15835437|ref|NP_297196.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
 gi|270285617|ref|ZP_06195011.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
 gi|270289627|ref|ZP_06195929.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss]
 gi|301337013|ref|ZP_07225215.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14]
 gi|8163328|gb|AAF73606.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum
           Nigg]
          Length = 250

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 4/182 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+    +  +  D ETTGLD K DR+IE  A+        +   +  + P  R  S E+ 
Sbjct: 1   MVLLKDIEFVCLDCETTGLDVKKDRVIEFAAIRFTFDEVIDSV-EFLIHPE-RAVSAESQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K+H I+D  LKDKP FS +FS    FF E++     H             +         
Sbjct: 59  KIHKISDAMLKDKPKFSEVFSTIKGFFKERDYIVGHHVGFDLQVLSQESERLGETLLPKQ 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +IDTL +A+    S  N L +L + + +       H A+ D  +   V+  +      
Sbjct: 119 HYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGN--HRAMKDVEMNVKVFKHLTKRFRT 176

Query: 181 IN 182
           ++
Sbjct: 177 LS 178


>gi|225376763|ref|ZP_03753984.1| hypothetical protein ROSEINA2194_02405 [Roseburia inulinivorans DSM
           16841]
 gi|225211389|gb|EEG93743.1| hypothetical protein ROSEINA2194_02405 [Roseburia inulinivorans DSM
           16841]
          Length = 241

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 7/171 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+E TGL++K DRI+E GA  +     T  TF   + P  RK   + + L GIT+E
Sbjct: 5   YVVIDLEMTGLNAKTDRILEAGAARVRGNVVTA-TFSEIINPK-RKLPEKVVSLTGITNE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                    +  + F+DF  E     +  N  FD  F+        +     +     L+
Sbjct: 63  MAAQGKETDATLAAFFDFIGE--DILVGQNVIFDYSFLKQWAVNHKRTFERNAVDTLKLA 120

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                    + DL SLC  +GI   H   H AL D      ++ +M     
Sbjct: 121 RKFLPQ-EQKKDLASLCSYFGIERVHA--HRALDDVMETQQIFEQMQKMYE 168


>gi|255534839|ref|YP_003095210.1| DNA Pol III Epsilon Chain [Flavobacteriaceae bacterium 3519-10]
 gi|255341035|gb|ACU07148.1| DNA Pol III Epsilon Chain [Flavobacteriaceae bacterium 3519-10]
          Length = 254

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 72/181 (39%), Gaps = 8/181 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +FD+ETTG++   DRI+EI  +++  D S+ ++T+   + P       E+ ++HGI+D+ 
Sbjct: 11  IFDLETTGVNVAKDRIVEISILKVNPDGSRESKTW--LVNPE-MYIPKESTEIHGISDDD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+ P F  I  +  +     +      N           L+      L   +++D  +I
Sbjct: 68  VKNSPKFKEIAPKVMEMITGTDLGGFNSNRFDVPLLAEELLRAGIDFDLTKFKLVDVQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +  P       S    +       + H A  D     +V    +   +++        
Sbjct: 128 YHKMEP----RNLSAAYNFYCKKELVNAHSAEADVLATFEVLDAQVAHYNELPNDIAGLS 183

Query: 190 D 190
           +
Sbjct: 184 E 184


>gi|322497434|emb|CBZ32508.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1430

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 6/159 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FDIETTGL+   D I+E+    + D  + N TF   + P  R  +P  + +H IT+
Sbjct: 764 RIVFFDIETTGLNPSTDAIVEVA---MFDPIE-NSTFHTLVNPQ-RSITPRTVGIHHITN 818

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++D P+   +      +    +      +    +   N                    
Sbjct: 819 AMVRDAPTVDVVAKSIGQYLRL-DKASYNPHEILVLVGHNVFSVDEPMLRRALECHAPEC 877

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            +       S   LN+        +  +  +  L+D+  
Sbjct: 878 QLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALA 916


>gi|146080581|ref|XP_001464035.1| mitochondrial DNA polymerase I protein B [Leishmania infantum
           JPCM5]
 gi|134068125|emb|CAM66410.1| putative mitochondrial DNA polymerase I protein B [Leishmania
           infantum JPCM5]
          Length = 1430

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 6/159 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FDIETTGL+   D I+E+    + D  + N TF   + P  R  +P  + +H IT+
Sbjct: 764 RIVFFDIETTGLNPSTDAIVEVA---MFDPIE-NSTFHTLVNPQ-RSITPRTVGIHHITN 818

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++D P+   +      +    +      +    +   N                    
Sbjct: 819 AMVRDAPTVDVVAKSIGQYLRL-DKASYNPHEILVLVGHNVFSVDEPMLRRALECHAPEC 877

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            +       S   LN+        +  +  +  L+D+  
Sbjct: 878 QLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALA 916


>gi|111018828|ref|YP_701800.1| DNA polymerase III [Rhodococcus jostii RHA1]
 gi|110818358|gb|ABG93642.1| probable DNA polymerase III [Rhodococcus jostii RHA1]
          Length = 649

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 76/178 (42%), Gaps = 7/178 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+ET+GL S   R++ + A+ L +     R     L P      P  + +H +T 
Sbjct: 70  RWVVVDVETSGLRSSTHRVLSVAALALREDGSVERELVTLLNPG---CDPGPVHIHNLTP 126

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P F  + ++  +  +      +AHNA FD GF++AE++R         R+    
Sbjct: 127 QRLAGAPRFEEVANDLLELLDG--RTLVAHNASFDYGFLDAEVRRAGMTMPTRQRLCTLA 184

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
              R +     + L++L   + +  +    H A  D+ +L++V+         +    
Sbjct: 185 LSRRLEIDVPNHKLSTLAAHWKVRQNRA--HDAYDDALVLTEVFAHSASLAESLRLPL 240


>gi|298252829|ref|ZP_06976623.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella
           vaginalis 5-1]
 gi|297533193|gb|EFH72077.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella
           vaginalis 5-1]
          Length = 337

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
             +V D ETTGL+SK D+IIEIGAV+ +D       FQ  + 
Sbjct: 155 NFVVIDCETTGLNSKVDKIIEIGAVKFIDGKI--EEFQKLIN 194


>gi|307297299|ref|ZP_07577105.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916559|gb|EFN46941.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 185

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 71/180 (39%), Gaps = 10/180 (5%)

Query: 7   MRKI--VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKL 62
           M+KI  V D ETTG    + DRI+EI A+ +      +  +FQ  + P       +   +
Sbjct: 1   MKKIYLVIDTETTGSSPLEGDRILEIAAIPVYGNKILHNLSFQSLVNP-LVMIPAQITGI 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+ +E + D+P+ + +F  F ++          HN   D+ F +   +     PL  + 
Sbjct: 60  HGLKNEDVLDEPTMAEVFPRFRNYVGGATIV--GHNIVNDMTFFDIASKETGILPLANNY 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I                  +   +     I     H A+ D+ + + V++ +      I+
Sbjct: 118 IDTIDIAHEVFSEGPYGLKSIAKRLR---IRDVPTHRAMDDARVTAKVFLALARRLGGIS 174


>gi|182417780|ref|ZP_02949096.1| putative exonuclease [Clostridium butyricum 5521]
 gi|237667945|ref|ZP_04527929.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182378504|gb|EDT76035.1| putative exonuclease [Clostridium butyricum 5521]
 gi|237656293|gb|EEP53849.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 975

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 85/252 (33%), Gaps = 32/252 (12%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             I  DIETTGLD  +  IIEIGA++  D + T  TF+  + P GR          G++ 
Sbjct: 11  NVIYLDIETTGLDETSSEIIEIGAIKFKDNTIT--TFETLIRPRGRVPIGIYNLCTGLSK 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L   PS  ++      F  +        N +                P   + I+D++
Sbjct: 69  EELYSAPSLGNVRESLSQFLEDLPLICHNGNFEK--------KFFRYHLPQIKNTIMDSM 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            +A    P  +    +   +    ++    H  L DS     V   ++      +   K 
Sbjct: 121 ELAAILEPYHKEYNLNALMKTVTDMNKNEIHRGLDDSINTLKVVNSLLCRLWS-SEEKKG 179

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRI----------TKEELDEHDKTIQT------- 230
            +   ++   K  P +     ++ L              + ++  E+   ++        
Sbjct: 180 KKRTLYENINKYYPYLKNWSWNRHLLKPPFFIYDDYDYVSYKDKKENKAFLENVKIDYGK 239

Query: 231 ----LGKNAIWD 238
               L    IW+
Sbjct: 240 YEELLKDEKIWN 251


>gi|332291593|ref|YP_004430202.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169679|gb|AEE18934.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 232

 Score = 66.1 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALK 61
           + +  R +VFD ETTGL  K DRI+ IGAV +++      ++ +++L  +  K     + 
Sbjct: 41  KLHTTRFVVFDTETTGLHYKEDRILSIGAVTVINNEISIAQSLELYLKQDIYKPESAKIH 100


>gi|327313528|ref|YP_004328965.1| exonuclease [Prevotella denticola F0289]
 gi|326944167|gb|AEA20052.1| exonuclease [Prevotella denticola F0289]
          Length = 284

 Score = 66.1 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 6/198 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGLD  NDRII+I  +++L   K  R   +F+ P  +    E  +L GI+ + 
Sbjct: 10  VVFDLETTGLDLVNDRIIQISFIKVLPDGKEERE-NIFINPE-KPIPTEVTQLTGISHKD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+F     E  D F   +      N           L+         SR+ID  +I
Sbjct: 68  VADAPTFRQKAKELADRFAGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFSKSRLIDAQNI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          +   ++           A          +  +       +   +   
Sbjct: 128 YHK----MERRNLAAAYKFYCGRKMEEDFEAHKADQDTEATWRVLQGELDMYSPDRQEEA 183

Query: 190 DRFFKEEKKTVPNISLLK 207
           DR    +   +   S + 
Sbjct: 184 DRVLANDMDELAEFSRMN 201


>gi|282861901|ref|ZP_06270964.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
 gi|282562926|gb|EFB68465.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
          Length = 333

 Score = 66.1 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 8/163 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+      L         +   + P      P  + +HG+T E
Sbjct: 19  YAVVDVETTGL-ARDDRIVSAAVYRLDALGDVEDHWYTLVNPER---DPGPVWIHGLTSE 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  + ++  +  +      +AHNA FD   +  E  R         R+     
Sbjct: 75  ALEGAPLFPEVAAQLSERLDG--RVLVAHNAAFDWSMLAREYARAAITAPVRQRLCTIAL 132

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               + P   + L SL   +G+       H AL D+ +L++ +
Sbjct: 133 SKELRLPLPNHKLESLAAHFGVVQQRA--HHALDDARVLAEAF 173


>gi|330833568|ref|YP_004402393.1| DNA polymerase III PolC [Streptococcus suis ST3]
 gi|329307791|gb|AEB82207.1| DNA polymerase III PolC [Streptococcus suis ST3]
          Length = 1463

 Score = 66.1 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 7/206 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S     L GITDE
Sbjct: 425 YVVFDVETTGLSAVNNALIQIAASKMHKGNIIAE-FDEFIDP-GHPLSQFTTDLTGITDE 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++       +  EF DF  +  +  +AHNA FDVGF+N   +R     +    I     
Sbjct: 483 HVRGSKPLEQVLREFQDFCQD--SVMVAHNATFDVGFMNVNYERAGLPIISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R+ L  L KR+G+ + H   H A  D+     +    +    +        
Sbjct: 541 ARNLYPDFKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLLFIFLKDALE-KHNLTNL 597

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
                +   +     + +K       
Sbjct: 598 NQLNTELIAEDSYKKARVKHATLYVI 623


>gi|313682951|ref|YP_004060689.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155811|gb|ADR34489.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 204

 Score = 66.1 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 3/167 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGL++K D ++ IGAV++  D   T+ +F++FL P  R+ S E++K+H I   
Sbjct: 32  VVFDTETTGLNTKKDEVLSIGAVKIKGDKILTSESFELFLKP-SREISVESIKIHHIRPC 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIIDTL 127
            L++         +F +F   +             +  +      +N             
Sbjct: 91  DLENAIEPVEGAKKFLEFVGNRPLIGYYLEFDMAMMNRLIKPWIGVNLPNRQIEVSGLYF 150

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  P    DL        + I    +H AL D+ + + VYIK+
Sbjct: 151 DKKIELIPQGNIDLRFDTILRDLNIPRMGQHNALNDAIMTAMVYIKL 197


>gi|260578114|ref|ZP_05846035.1| exonuclease [Corynebacterium jeikeium ATCC 43734]
 gi|258603753|gb|EEW17009.1| exonuclease [Corynebacterium jeikeium ATCC 43734]
          Length = 198

 Score = 66.1 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
          IV D+ETTGL  + +RIIEI A+ + +       +   L PN      E   L GI+D  
Sbjct: 13 IVIDLETTGLRPQEERIIEIAALHIRNGEL-QDKYTTLLNPNL-SVPQEITDLTGISDGL 70

Query: 70 LKDKPSFSSIFSEFWDFFNE 89
          L DKP+FS +  E  +F  +
Sbjct: 71 LADKPTFSEVMPELLNFLRD 90


>gi|68535798|ref|YP_250503.1| putative exonuclease [Corynebacterium jeikeium K411]
 gi|68263397|emb|CAI36885.1| putative exonuclease [Corynebacterium jeikeium K411]
          Length = 198

 Score = 66.1 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
          IV D+ETTGL  + +RIIEI A+ + +       +   L PN      E   L GI+D  
Sbjct: 13 IVIDLETTGLRPQEERIIEIAALHIRNGEL-QDKYTTLLNPNL-SVPQEITDLTGISDGL 70

Query: 70 LKDKPSFSSIFSEFWDFFNE 89
          L DKP+FS +  E  +F  +
Sbjct: 71 LADKPTFSEVMPELLNFLRD 90


>gi|89898431|ref|YP_515541.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56]
 gi|89331803|dbj|BAE81396.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56]
          Length = 228

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 7/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG     DRIIEI A    +   T  +F  ++ P       EA K+HGIT   
Sbjct: 5   IFYDTETTGTQIDKDRIIEIAA--FNN--VTKESFVTYVNPK-IPIPEEASKIHGITTST 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P F   + +F DF   +      +N  FD   +  E +R + +PL    I      
Sbjct: 60  VASAPDFPEAYKQFRDFCGNEAVLVAHNNDGFDFPLLEKECRRHSLEPLTLRTIDSLKWA 119

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            + +    +++L  L + YG        H AL D   L DV+  ++  
Sbjct: 120 QKYRPDLPKHNLQYLRQVYGFA--ENQAHRALDDVITLHDVFSALIGD 165


>gi|304383117|ref|ZP_07365592.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii
           DSM 16973]
 gi|304335803|gb|EFM02058.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii
           DSM 16973]
          Length = 889

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGLD   D I+++ A+++ +       +F VF+    R+       +     E
Sbjct: 504 VVFDTETTGLDVFADDIVQLAAIKVRNGKVVEGSSFNVFIRTE-REIPAMLGDIPNPIIE 562

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +K     S   +         +   + HN ++D   +   L R     ++  + ++
Sbjct: 563 EMKHHECLSPEEAFAQFMDYVADDAVLGHNVEYDFHILLYNLLRHAPQWVERWKAVE 619


>gi|271970236|ref|YP_003344432.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270513411|gb|ACZ91689.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 189

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 13/180 (7%)

Query: 12  FDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+ETTG    K DRI EI  V L     T   +   + P   +    A+ +HGIT+  +
Sbjct: 2   VDVETTGFSPAKGDRICEIALVSLDADGTTVDEWHSLVDP---RRGTGAVHVHGITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P    +  E W          +AHN  FD+ F+              ++ +      
Sbjct: 59  EGAPVIEEVLDEVWQRIAG--RVLVAHNVSFDLRFLKVLPGSHWLTEALCTQQLAPDL-- 114

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
               P  +  L + C+R GI  S+     A   +   ++++   +  G   +       +
Sbjct: 115 ---IPGGKWTLGACCQRAGIPFSNAHAALADARAT--AELFRFYLGRGLSWHDSLDRAAE 169


>gi|283783236|ref|YP_003373990.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis
           409-05]
 gi|283441075|gb|ADB13541.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis
           409-05]
          Length = 359

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
             +V D ETTGL+SK D+IIEIGAV+ +D       FQ  + 
Sbjct: 177 NFVVIDCETTGLNSKVDKIIEIGAVKFIDGKI--EEFQKLIN 216


>gi|226360268|ref|YP_002778046.1| hypothetical protein ROP_08540 [Rhodococcus opacus B4]
 gi|226238753|dbj|BAH49101.1| putative DNA polymerase III epsilon subunit [Rhodococcus opacus B4]
          Length = 588

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 63/167 (37%), Gaps = 4/167 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG     D I EIGAV++             + P GR   P  +++ GIT  
Sbjct: 24  FVVVDLETTGARPGEDAITEIGAVKIRGGEVIAEM-ATLVDP-GRSIPPHIVEITGITTA 81

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P    +   F +    + A  +AHNA FD GF+ A     +      + +     
Sbjct: 82  MVIDAPRIERVLPAFLE--FARGAVLVAHNAPFDTGFLKAAAAATDTPWPKFTVLCTVKL 139

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R         +        + +     H AL D+    DV   ++
Sbjct: 140 ARRVLTRDEAPSVKLSSLARLLDVGTTPTHRALDDARATVDVLHALI 186


>gi|146319608|ref|YP_001199320.1| DNA polymerase III PolC [Streptococcus suis 05ZYH33]
 gi|146321806|ref|YP_001201517.1| DNA polymerase III PolC [Streptococcus suis 98HAH33]
 gi|253752606|ref|YP_003025747.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|253754432|ref|YP_003027573.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|253756365|ref|YP_003029505.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|166217454|sp|A4W428|DPO3_STRS2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217456|sp|A4VXT1|DPO3_STRSY RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|145690414|gb|ABP90920.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus suis 05ZYH33]
 gi|145692612|gb|ABP93117.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus suis 98HAH33]
 gi|251816895|emb|CAZ52544.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|251818829|emb|CAZ56672.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|251820678|emb|CAR47440.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|292559223|gb|ADE32224.1| DNA polymerase III, alpha subunit [Streptococcus suis GZ1]
 gi|319759021|gb|ADV70963.1| DNA polymerase III PolC [Streptococcus suis JS14]
          Length = 1463

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 7/206 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S     L GITDE
Sbjct: 425 YVVFDVETTGLSAVNNALIQIAASKMHKGNIIAE-FDEFIDP-GHPLSQFTTDLTGITDE 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++       +  EF DF  +  +  +AHNA FDVGF+N   +R     +    I     
Sbjct: 483 HVRGSKPLEQVLREFQDFCQD--SVMVAHNATFDVGFMNVNYERAGLPIISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R+ L  L KR+G+ + H   H A  D+     +    +    +        
Sbjct: 541 ARNLYPDFKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLLFIFLKDALE-KHNLTNL 597

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
                +   +     + +K       
Sbjct: 598 NQLNTELIAEDSYKKARVKHATLYVI 623


>gi|328950488|ref|YP_004367823.1| DNA polymerase III, epsilon subunit [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450812|gb|AEB11713.1| DNA polymerase III, epsilon subunit [Marinithermus hydrothermalis
           DSM 14884]
          Length = 248

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL  + D IIE+  + +    +    +   + P GR   P   +L GI    
Sbjct: 77  VVLDLETTGLSPERDEIIEVALIRVEGARRL--EYSRLVNP-GRPIPPRITRLTGIRSGD 133

Query: 70  LKDKP 74
           ++D+P
Sbjct: 134 VRDQP 138


>gi|328544128|ref|YP_004304237.1| DNA polymerase III, epsilon subunit [polymorphum gilvum
           SL003B-26A1]
 gi|326413871|gb|ADZ70934.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 719

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 4/109 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGLD ++DRI++IGAV +          F+V + P G      A ++HG+ D 
Sbjct: 21  VVLDTETTGLDVRHDRIVQIGAVRMHGAEIDETAVFEVTVDP-GIPIPEVASRIHGLADA 79

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            +  KP  +++  +   F  +  A  + H+  FD+  +  E +R     
Sbjct: 80  DVAGKPGLAAVMPDLVAFIGD--AVVVGHSIHFDMAVLRHEAERHGFVW 126


>gi|302024523|ref|ZP_07249734.1| DNA polymerase III PolC [Streptococcus suis 05HAS68]
          Length = 1463

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 7/206 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S     L GITDE
Sbjct: 425 YVVFDVETTGLSAVNNALIQIAASKMHKGNIIAE-FDEFIDP-GHPLSQFTTDLTGITDE 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++       +  EF DF  +  +  +AHNA FDVGF+N   +R     +    I     
Sbjct: 483 HVRGSKPLEQVLREFQDFCQD--SVMVAHNATFDVGFMNVNYERAGLPIISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R+ L  L KR+G+ + H   H A  D+     +    +    +        
Sbjct: 541 ARNLYPDFKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLLFIFLKDALE-KHNLTNL 597

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
                +   +     + +K       
Sbjct: 598 NQLNTELIAEDSYKKARVKHATLYVI 623


>gi|256851899|ref|ZP_05557287.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN]
 gi|260661840|ref|ZP_05862750.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN]
 gi|282931860|ref|ZP_06337341.1| DNA polymerase III [Lactobacillus jensenii 208-1]
 gi|256615857|gb|EEU21046.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN]
 gi|260547309|gb|EEX23289.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN]
 gi|281304023|gb|EFA96144.1| DNA polymerase III [Lactobacillus jensenii 208-1]
          Length = 317

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 72/219 (32%), Gaps = 12/219 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
            DIETTGL    DRI E+  +++ +       +   +  P   K      KL+GI +  +
Sbjct: 38  LDIETTGLSPYRDRITELAGIKVRNGKVVAE-YSQLVKYPKDNKVPRFITKLNGIDEALI 96

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                        +  F       + +N  FD+ FI    ++     L  + I       
Sbjct: 97  LANGMPVKEAITEFRNFIG-GDVIVGYNVNFDLNFIYDLCEKFQLKKLSNNYIDVLHFSR 155

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
                 S N L    +R GI+      H  L DS     V+              +  + 
Sbjct: 156 VFFKKESHNRLLDCIRRLGIS--ESEAHRGLKDSLDTKAVFDIY-RKQFTPEMLNEVKDS 212

Query: 191 RFFKEEKKTVPNISLLKRDKPLFT------RITKEELDE 223
                  + +P   L+KR+            + KEEL+ 
Sbjct: 213 LKSCVLTEEIPFEYLIKRNPLKNKTVVFAGTVNKEELEL 251


>gi|119471121|ref|ZP_01613653.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7]
 gi|119445777|gb|EAW27059.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7]
          Length = 745

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 7/162 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG     +R+ EIG V++        T+   + P  R       KL GI+D  +
Sbjct: 581 VVDIETTGGLKGGNRVTEIGIVKVQHGKVI-DTWTTLINPQ-RHIPSFITKLTGISDGMV 638

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + P F+ I     D            N  +       E+            ++++    
Sbjct: 639 YNAPVFADIAQPLLDKLAGSIFVAHNVNFDYGFIKKECEVAGHFFKMPKMCTVVESRRAF 698

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +     S  +L++        ++  S H AL D+   +++ +
Sbjct: 699 KGLKSYSLGNLSAH-----FNLNLTSHHRALADATATAELLL 735


>gi|212696923|ref|ZP_03305051.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676213|gb|EEB35820.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 1010

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 7/182 (3%)

Query: 15  ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP 74
           ETTGL   +D+I EIGAV++ +   T   F   + P  +    + ++L GIT+E + DKP
Sbjct: 2   ETTGLYKYSDKITEIGAVKVENGEIT-EVFNELVNPE-KMIPEKVVELTGITNEMVMDKP 59

Query: 75  SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH 134
               I  +F +    ++A ++  N  FD+GFI       N         +DTL +AR   
Sbjct: 60  KIDEILPKFLE--FSKDAYFVGQNTDFDIGFIK--EACDNLSYQFEPVYLDTLPMARAVF 115

Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFK 194
           PS          +  + +   + H A  D+   + V+IK+       N      +    K
Sbjct: 116 PSMGRFSLDKLAKK-LAVGPFNHHRASDDAMTTAKVFIKLFEKIKDKNKDLSLAKINSIK 174

Query: 195 EE 196
            +
Sbjct: 175 TK 176


>gi|291540867|emb|CBL13978.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis XB6B4]
          Length = 235

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 16/216 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+E TGL++K D I+E+GAV + ++   ++ F   LC    K   +  +L GIT+ 
Sbjct: 4   YVVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDK-FGAILC-QNVKIPEKVTELTGITEA 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++          +F++F  E     +  N  FD GF+       N      +     L+
Sbjct: 62  MVQGGMEKEEAMRQFFEFIGE--DIIVGQNVIFDYGFLKQWAVNHNMPLERNAVDTLKLA 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    + DL SLC  +G+     + H A  D++    VY  +     + + G    
Sbjct: 120 RKFLPK-EQKKDLESLCACFGVK--RENAHRAFDDAYETWQVYEALRERYEEESAGDFMP 176

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
           +   +K +K+T   +  +K  +         E   H
Sbjct: 177 KPLLYKAKKQTPATVRQIKYLR---------EYAAH 203


>gi|223933907|ref|ZP_03625870.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
 gi|223897433|gb|EEF63831.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
          Length = 1463

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 7/206 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S     L GITDE
Sbjct: 425 YVVFDVETTGLSAVNNALIQIAASKMHKGNIIAE-FDEFIDP-GHPLSQFTTDLTGITDE 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++       +  EF DF  +  +  +AHNA FDVGF+N   +R     +    I     
Sbjct: 483 HVRGSKPLEQVLREFQDFCQD--SVMVAHNATFDVGFMNVNYERAGLPIISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R+ L  L KR+G+ + H   H A  D+     +    +    +        
Sbjct: 541 ARNLYPDFKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLLFTFLKDALE-KHNLTNL 597

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
                +   +     + +K       
Sbjct: 598 NQLNTELIAEDSYKKARVKHATLYVI 623


>gi|303236025|ref|ZP_07322628.1| exonuclease [Prevotella disiens FB035-09AN]
 gi|302483898|gb|EFL46890.1| exonuclease [Prevotella disiens FB035-09AN]
          Length = 284

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 68/198 (34%), Gaps = 6/198 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGLD   DRII+I  +++       R   +++ P  ++   E ++L GI+D  
Sbjct: 10  IVFDLETTGLDLVKDRIIQISYIKVSPNGDEERE-NLYINPE-KEIPKEVVELTGISDAD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P+F     E  D F   +      N           L+          R+ID  +I
Sbjct: 68  VASAPTFKQKAKELADKFIGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFSKCRLIDAQNI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          +    +           A          +  +       +   +   
Sbjct: 128 FHK----MERRNLAAAYEFYCGRKMEEDFTAHKADEDTEATWRVLQGQIEMYSAEKQDEP 183

Query: 190 DRFFKEEKKTVPNISLLK 207
           +R  K +   + N S + 
Sbjct: 184 ERILKNDMDELANFSSMN 201


>gi|330816132|ref|YP_004359837.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
 gi|327368525|gb|AEA59881.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
          Length = 203

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 8/170 (4%)

Query: 7   MRKI-VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+ + V D ETTGL   + DR  EI  V L D    +R +Q  +   GR+   + + L G
Sbjct: 1   MQTVAVLDFETTGLSPAQGDRATEIAIVLLRDGEIVDR-YQSLMN-AGRRIPSDVVALTG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT++ +   P  +S+  E   F    N   +AHNA FD  F     +             
Sbjct: 59  ITNDMIASAPPVASVMREAAAFV--GNHPVVAHNAGFDRRFWQ--SELGLLGVPSAHEFA 114

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            TL +ARR +P + +   S              H A++D+ + S ++ ++
Sbjct: 115 CTLLVARRIYPQAPSHRLSSLVEMLSLPKTGRAHRAMVDAEMASHLWCRL 164


>gi|282878677|ref|ZP_06287446.1| exonuclease [Prevotella buccalis ATCC 35310]
 gi|281299222|gb|EFA91622.1| exonuclease [Prevotella buccalis ATCC 35310]
          Length = 284

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 68/198 (34%), Gaps = 6/198 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGLD   DRII+I  +++    K  R   + + P  +    E   L GIT+E 
Sbjct: 10  IVFDLETTGLDLVKDRIIQISYIKVFPDGKEERE-NILVNPE-KNIPLEVSALTGITNED 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P F  I  +  + F   +      N           L+         S ++D  +I
Sbjct: 68  VADAPKFQDIAQKLAEEFKGCDFAGYNSNHFDIPILAEEFLRAGIDFDFSKSNLVDAQAI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          +   ++           A          Y  +M    + N       
Sbjct: 128 FHK----MERRNLAAAYKFYCGRKMEDDFEAHRADQDAEVTYRVLMGQLDKYNPETAEEA 183

Query: 190 DRFFKEEKKTVPNISLLK 207
           DR    + K +   S + 
Sbjct: 184 DRALPNDMKYLAEFSKMN 201


>gi|238925353|ref|YP_002938870.1| DNA polymerase III, epsilon subunit [Eubacterium rectale ATCC
           33656]
 gi|238877029|gb|ACR76736.1| DNA polymerase III, epsilon subunit [Eubacterium rectale ATCC
           33656]
          Length = 245

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 7/177 (3%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N     V D+E TGL +KND+IIEIGA  +        T    + P  +       +L 
Sbjct: 5   DNIKNYTVIDLEMTGLSAKNDKIIEIGAARVRGGEIV-DTISTLVNPK-QHIPQRVQELT 62

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD  +++            +F  +     +  N  FD  F+        +     +  
Sbjct: 63  GITDSDVENAADMDEAVDNLLNFIGD--DIILGQNVTFDYSFLKQWAVNHKRTLSLNAYD 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              ++            L  LC+ +G++   ++ H AL D+     ++ K++    +
Sbjct: 121 TLKIARKCLPA-EQSKKLEDLCEYFGVS--RKNAHRALDDAIETKQIFEKLLALMDE 174


>gi|296166059|ref|ZP_06848506.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295898580|gb|EFG78139.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 648

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 77/210 (36%), Gaps = 10/210 (4%)

Query: 9   KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +V D+ETTG  +K       D I EIGAV++         F   + P  R   P+ ++L
Sbjct: 43  FVVVDLETTGGRTKATGGNAPDAITEIGAVKVRGGVVLGE-FATLVDPE-RSIPPQIVRL 100

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT   + D P   ++   F +     +A  +AHNA FD+GF+ A   R +     P  
Sbjct: 101 TGITTAMVSDAPRIDAVLPMFLE--FAGDAVLVAHNAGFDIGFLRAAAARCDIAWPRPKV 158

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +       R         +          ++ +  H AL D+    +V   ++       
Sbjct: 159 LCTVRLARRVLSREEAPSVRLGALARLFAVAAQPTHRALDDARATVEVLHALIERVGNQG 218

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
                +   +  +   T     +L    P 
Sbjct: 219 VHTYADLRSYLPDVTPTQRRKRVLAEGLPR 248


>gi|297243541|ref|ZP_06927472.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella
           vaginalis AMD]
 gi|296888292|gb|EFH27033.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella
           vaginalis AMD]
          Length = 338

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
             +V D ETTGL+SK D+IIEIGAV+ +D       FQ  + 
Sbjct: 156 NFVVIDCETTGLNSKVDKIIEIGAVKFIDGKI--EEFQKLIN 195


>gi|328479965|gb|EGF49008.1| DNA polymerase III PolC [Lactobacillus rhamnosus MTCC 5462]
          Length = 132

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P         L ++     
Sbjct: 13  YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDPG---FPLSELTINLTHIT 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
                 S S              A  + HN  FDVGF++   +R 
Sbjct: 69  DDMVHGSKSEEEVFRLFQQFCDGAIMVGHNVTFDVGFLDNGYERH 113


>gi|260655785|ref|ZP_05861254.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
 gi|260629401|gb|EEX47595.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
          Length = 208

 Score = 65.7 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 6/173 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIETTGL  ++  IIE+GA++ +   K    F   + P G         +HGITD+
Sbjct: 12  YVALDIETTGLSPRSCSIIEVGALKFVPGKK-GEEFSSLIDP-GCPIPASGRSIHGITDD 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P    + +   DF     A  + HNA FD+ FI   L ++ +       + DTL 
Sbjct: 70  MVAGQPRVEEVIAGLLDFVGP--APLVLHNAPFDLSFIAPVLDKLGRKW-QAMTVFDTLP 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++R   P  R+        +         H AL D      ++ + +    Q+
Sbjct: 127 LSRVAFPGLRSYSLESLSDF-FEFKEGVHHRALCDCWYTQQLFTRFLEKVDQL 178


>gi|313843978|ref|YP_004061641.1| hypothetical protein OlV1_008c [Ostreococcus lucimarinus virus
           OlV1]
 gi|312599363|gb|ADQ91385.1| hypothetical protein OlV1_008c [Ostreococcus lucimarinus virus
           OlV1]
          Length = 447

 Score = 65.7 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 86/253 (33%), Gaps = 36/253 (14%)

Query: 7   MRKIVFDIETTGL---------------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
           M  I FD ET+GL               +    R + + A       +  +TF   + P+
Sbjct: 5   MNYIAFDFETSGLPRGRRNTKVTHETLSNFDGCRAVSLSAARFSQRGRLIKTFDAIIRPD 64

Query: 52  GRKNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           G +   E++ +HGI++E    +   F  ++ +F +F   +    +AHNA+FD   + +E+
Sbjct: 65  GFQIGEESIAIHGISNEKALSEGRPFPEVYRDFMEFIGPRTKTLVAHNAQFDTSVLQSEM 124

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            R          ++   ++   +         +            + H +L DS     V
Sbjct: 125 LRHGIPLEQIDDLVIRCTLEMYRDRFMGPIKLTKLYADIFGEEFDNAHNSLADSIACGRV 184

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           Y  ++    +        +         +   I+  K+ + L      EE          
Sbjct: 185 YPYLLGQTERTLKPLPIKKVIIGASSVASAIGINQYKKPQELV-----EE---------- 229

Query: 231 LGKNAIWDRYISS 243
                +W +Y   
Sbjct: 230 -----LWKKYSPQ 237


>gi|224373045|ref|YP_002607417.1| exonuclease [Nautilia profundicola AmH]
 gi|223588855|gb|ACM92591.1| exonuclease [Nautilia profundicola AmH]
          Length = 203

 Score = 65.7 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP 50
          +V D ETTGLD K D II IGAV +  +    +R F +F+ P
Sbjct: 32 VVVDTETTGLDRKKDEIISIGAVIVKNNRVLLSRKFHIFVKP 73


>gi|291524324|emb|CBK89911.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium rectale DSM 17629]
          Length = 260

 Score = 65.7 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 67/177 (37%), Gaps = 7/177 (3%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N     V D+E TGL +KND+IIEIGA  +        T    + P  +       +L 
Sbjct: 20  DNIKNYTVIDLEMTGLSAKNDKIIEIGAARVRGGEIV-DTISTLVNPK-QHIPQRVQELT 77

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD  +++            +F  +     +  N  FD  F+        +     +  
Sbjct: 78  GITDSDVENAADMDVAVDNLLNFIGD--DIILGQNVTFDYSFLKQWAVNHKRTLSLNAYD 135

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              ++            L  LC+ +G++    + H AL D+     ++ K++V   +
Sbjct: 136 TLKIARKCLPA-EQSKKLEDLCEYFGVS--RENAHRALDDAIETKQIFEKLLVLMDE 189


>gi|269836971|ref|YP_003319199.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM
           20745]
 gi|269786234|gb|ACZ38377.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM
           20745]
          Length = 658

 Score = 65.7 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTGL     RIIE+ A+      +    F   + P  R       KL GI + 
Sbjct: 88  FVVIDIETTGLRPLRQRIIEVAAIRYRGGRRQG-VFSTLVNPE-RPVPAYIRKLTGIDET 145

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
            L   P F  +  E   F  +       
Sbjct: 146 ALAGAPVFRRVADELTAFLGDDLLIGYN 173


>gi|260591581|ref|ZP_05857039.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319]
 gi|260536381|gb|EEX18998.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319]
          Length = 896

 Score = 65.7 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 3/115 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGIT 66
           +VFD ETTGLD   D IIEI A+++           +++    P   K   +   ++ I 
Sbjct: 515 VVFDTETTGLDVFADDIIEIAAMKIKGGEIVGEPLDLYIKTDKPILPKLGDKDNPMYAIY 574

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            E L  +   +   +             + HNA +D   I+  LQR   D L   
Sbjct: 575 HEKLSAEELITPQEALQRFLAYIGTRPILGHNASYDYNIIDNCLQRYCNDTLKAH 629


>gi|310641367|ref|YP_003946125.1| DNA polymerase iii, epsilon subunit [Paenibacillus polymyxa SC2]
 gi|309246317|gb|ADO55884.1| DNA polymerase III, epsilon subunit [Paenibacillus polymyxa SC2]
          Length = 245

 Score = 65.3 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 4/171 (2%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTG  ++  D I+  GA+ ++      +  F   + P   +   +  +L GIT 
Sbjct: 61  VVFDLETTGFSAQHGDEILSFGAIRVVGDVIMEKEQFYTLVNP-RTEIPEQITRLTGITR 119

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRIIDT 126
           E     P   +   +F  F   +     A             +  ++         ++  
Sbjct: 120 EMTDGAPPLMNGLHDFMSFVGGRVLVAHASAHDKAFLNAALWKTSKVQLTHRVLDTMMLA 179

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +  ++H +   D     +   I   H +   A + + L      +M+  
Sbjct: 180 KWLEPQQHQTYSLDELLAYQSIPIEGRHHALEDAKMTAKLWVAYVQEMLKR 230


>gi|332667256|ref|YP_004450044.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM
           1100]
 gi|332336070|gb|AEE53171.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 282

 Score = 65.3 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 68/179 (37%), Gaps = 11/179 (6%)

Query: 7   MRKI------VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+ I       FDIE TGL+   DRI++I  ++     +  +   + + P G   S EA+
Sbjct: 1   MKLILDRDLCFFDIEATGLNVVRDRIVQIAIIKYFKDGREPQELSLMINP-GIPISLEAI 59

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI  + + +KP+F  +  + WDF    +      N       +    +   +  +  
Sbjct: 60  LVHGIQPKDVANKPTFQQLAQKIWDFIGNADLAGYNSNRFDIPMLMEEFARVGMEFDVTK 119

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            R ID   I  +  P           ++     H   H A+ D     DV+   +    
Sbjct: 120 RRSIDVQRIFYKMEP----RTLKAALKFYCEKEHEDAHDAMADVRATIDVFKGQLDKYE 174


>gi|325854302|ref|ZP_08171501.1| exonuclease [Prevotella denticola CRIS 18C-A]
 gi|325484096|gb|EGC87030.1| exonuclease [Prevotella denticola CRIS 18C-A]
          Length = 284

 Score = 65.3 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 71/198 (35%), Gaps = 6/198 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGLD  NDRII+I  +++L   K  R   +F+ P  +    E  +L GI+D+ 
Sbjct: 10  VVFDLETTGLDLVNDRIIQISFIKVLPDGKEERE-NIFINPE-KPIPTEVTQLTGISDKD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+F     E  D F   +      N           L+         SR+ID  +I
Sbjct: 68  VADAPTFRQKAKELADRFTGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFSKSRLIDAQNI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          +   ++           A          +  +       +   +   
Sbjct: 128 YHK----MERRNLAAAYKFYCGRKMEEDFEAHKADQDTEATWRVLQGELDMYSPDRQEEA 183

Query: 190 DRFFKEEKKTVPNISLLK 207
           DR    +   +   S + 
Sbjct: 184 DRVLANDMDELAEFSRMN 201


>gi|315924662|ref|ZP_07920879.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621561|gb|EFV01525.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 178

 Score = 65.3 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 9/171 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFD+ET   + +N R+  IG   + D   T+  F   + P          +L GI +
Sbjct: 3   RFVVFDVET--PNRENRRMSAIGITVIEDGKITDE-FYSLVNPET-YFDYFNTRLTGICE 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + + P+F  ++       +      +AHNA FD+G +   L+    +     R + T+
Sbjct: 59  DAVWNAPTFPELWKTIAPMLSS--GLLVAHNAVFDMGVLKRCLRDYRIEWKPHVRYLCTV 116

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            + RR  P   + LN LC  YG    + + H A  DS   + + ++ +  G
Sbjct: 117 QMGRRIIPGMSHKLNVLCDYYG---INLAHHQAASDSRACAQILLRYLEVG 164


>gi|229822935|ref|ZP_04449005.1| hypothetical protein GCWU000282_00227 [Catonella morbi ATCC 51271]
 gi|229787748|gb|EEP23862.1| hypothetical protein GCWU000282_00227 [Catonella morbi ATCC 51271]
          Length = 828

 Score = 65.3 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 2   IRKNKMRKIVFDIETTG--LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           ++   +R  V D+ETTG  LD + D+II+IGAV + D     +   + L P  R      
Sbjct: 1   MKAKGIRIAVVDLETTGSHLD-QGDQIIQIGAVLIEDGQVLAQH-SMLLNPE-RNIPTHI 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
             + GI  + ++D P+FS +   +++   +              
Sbjct: 58  TAITGIQSDQVQDAPTFSQVAGLWYERLKDCFFVAHNLGFDLTF 101


>gi|295133095|ref|YP_003583771.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
 gi|294981110|gb|ADF51575.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
          Length = 257

 Score = 65.3 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 19/222 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG +   DRI+EI  +++  + +K +RT+   + P   +   E + +HGI++E 
Sbjct: 11  FFDLETTGTNLAKDRIVEIAILKVYPNGNKESRTW--LVNPE-MEIPKEVIAIHGISNEK 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P+F  +  + +D     +      N           L+      +     +D  +I
Sbjct: 68  VANEPTFKELSKQIYDMIKGCDLGGYNSNRFDIPLLAEELLRADIDFDMKNMMAVDVQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK--- 186
             +          +   ++         H A  D+    +V    +     +    K   
Sbjct: 128 FHK----KEQRTLAAAFKFYCGKELIDAHSAAADTEATYEVLKSQLDKYDDLENDIKWLS 183

Query: 187 --------TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
                    +   F    KK     S  K    L   + ++E
Sbjct: 184 QYSARKSFADFAGFISFNKKGEEIFSFGKYRGKLVEEVLEKE 225


>gi|254386412|ref|ZP_05001717.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
 gi|194345262|gb|EDX26228.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
          Length = 334

 Score = 65.3 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 8/163 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL ++ DRI+      L         +   + P      P  + +HG+T +
Sbjct: 31  YAVVDVETTGL-AREDRIVSAAVYRLDAQGNVEDHWYTLVNPQR---DPGPVWIHGLTSD 86

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P F  I  EF     +     +AHNA FD   I  E  R  +      R+     
Sbjct: 87  MLQDAPLFKDIAGEFAGRLAD--RVLVAHNAIFDWQMIAREYARAEETAPVRQRLCTIAL 144

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                 P   + L SL   +G+       H AL D+ +L++ +
Sbjct: 145 SKELNLPLPNHKLESLAAHFGVVQQRA--HHALDDARVLAEAF 185


>gi|332532199|ref|ZP_08408080.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038297|gb|EGI74742.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 671

 Score = 65.3 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 4/107 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG     +RI EIG V++        T+   + P  R        L GI+D  +
Sbjct: 569 VVDIETTGGLKGGNRITEIGIVKVRHGKVI-DTWTSLVNPE-RHIPGFITSLTGISDSMV 626

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            + P F+ I     D      + ++AHN  FD GFI  E +      
Sbjct: 627 YNAPVFADIVKPLLDKLAG--SIFVAHNVNFDYGFIKKECEVAGHFF 671


>gi|294853583|ref|ZP_06794255.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
 gi|294819238|gb|EFG36238.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
          Length = 191

 Score = 65.3 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 3/132 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 33  IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 90

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +      E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 91  VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 149

Query: 122 RIIDTLSIARRK 133
                    R  
Sbjct: 150 VYCTMDGARRLW 161


>gi|291535622|emb|CBL08734.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis M50/1]
          Length = 235

 Score = 65.3 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 87/216 (40%), Gaps = 16/216 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+E TGL++K D I+E+GAV + ++   ++ F   LC    K   +  +L GIT+ 
Sbjct: 4   YVVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDK-FGAILC-QNVKIPEKVTELTGITEA 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++          +F++F  E     +  N  FD GF+       N      +     L+
Sbjct: 62  MVQGGMEKEEAMRQFFEFIGE--DIIVGQNVIFDYGFLKQWAVNHNMPLERNAVDTLKLA 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    + DL SLC  +G+     + H A  D++    VY  +     + + G    
Sbjct: 120 RKFLPK-EQKKDLESLCACFGVK--RENAHRAFDDAYETWQVYEALRERYEEESAGDFMP 176

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
           +   +K +K+T      +K  +         E   H
Sbjct: 177 KPLLYKAKKQTPATARQIKYLR---------EYAAH 203


>gi|146300234|ref|YP_001194825.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
          UW101]
 gi|146154652|gb|ABQ05506.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
          UW101]
          Length = 209

 Score = 65.3 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALK 61
          R +V D ETTG D +NDRI+ IGA+ L +       +F+++L  +    S   + 
Sbjct: 24 RFVVLDTETTGFDYENDRILCIGALALQNGVISVQDSFEIYLHQDHYDKSTAQIH 78


>gi|88596045|ref|ZP_01099282.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190886|gb|EAQ94858.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315058737|gb|ADT73066.1| Exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni S3]
 gi|315927070|gb|EFV06421.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 326

 Score = 65.3 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 72/210 (34%), Gaps = 10/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG D K + I+EI A+   +  K    F   +            +  GI ++
Sbjct: 34  YVVIDLETTGFDPKCNEILEIVALRYENNEKIAE-FSKLIK--VSFLPSFITEFTGINED 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+    S    EF DF        +AHNA FD+ F+          P     +     
Sbjct: 91  MIKNCNDISQTLKEFDDFLKS-GDILVAHNAHFDINFLYDNFMCYLNKPFSFDFVDTMRL 149

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   + + L  LC +Y   I + + H    D  L     +++     +  F     
Sbjct: 150 SKLINQELAHHRLKDLCNQYN--ICYENAHRGEKDCELTHLCLMEL----KKTAFDNSLI 203

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
           E+                 + K +  +I +
Sbjct: 204 ENDVLVNNGLKTQIRQTQTKAKDIQAKIQE 233


>gi|314055097|ref|YP_004063435.1| putative exonuclease RNase T and DNA polymerase III [Ostreococcus
           tauri virus 2]
 gi|313574988|emb|CBI70001.1| putative exonuclease RNase T and DNA polymerase III [Ostreococcus
           tauri virus 2]
          Length = 447

 Score = 65.3 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 86/253 (33%), Gaps = 36/253 (14%)

Query: 7   MRKIVFDIETTGL---------------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
           M  I FD ET+GL               +    R + + A       +  +TF   + PN
Sbjct: 5   MNYIAFDFETSGLPRGRRNTKVTHETLSNFDGCRAVSLSAARFSQRGRLIKTFDAIIRPN 64

Query: 52  GRKNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           G +   E++ +HGI++E    +   F  +F +F +F   +    +AHNA+FD   + +E+
Sbjct: 65  GFQIGEESIAIHGISNEKALSEGRPFPDVFKDFMEFIGPRTKTLVAHNAQFDTSVLQSEM 124

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            R          ++   ++   +         +            + H +L DS     V
Sbjct: 125 LRHGIPLEQIDDLVIRCTLEMYRDRFMGPIKLTKLYADIFGEEFDNAHNSLADSIACGRV 184

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           Y  ++    +        +         +   I+  K+ + L      EE          
Sbjct: 185 YPYLLGQTERTLKPLPIKKVIIGASSVASAIGINQYKKPQELV-----EE---------- 229

Query: 231 LGKNAIWDRYISS 243
                +W +Y   
Sbjct: 230 -----LWKKYSPQ 237


>gi|299538599|ref|ZP_07051882.1| ATP-dependent helicase dinG [Lysinibacillus fusiformis ZC1]
 gi|298726186|gb|EFI66778.1| ATP-dependent helicase dinG [Lysinibacillus fusiformis ZC1]
          Length = 923

 Score = 65.3 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 75/187 (40%), Gaps = 10/187 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M+   K    + D+ETTG      DR+I+I  V + D  +  RT+  F+ P G+      
Sbjct: 1   MMESQK--YAIVDLETTGHSPANGDRMIQIAIVIMKD-WEIERTYTKFINP-GKAIPTFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             L  IT+E +KD   F +     ++   +    ++AHNA FD+ F+ AE +R       
Sbjct: 57  QDLTHITNEDVKDAFPFEAHADYIYELLAD--CVFVAHNADFDLSFLQAEFKRAGLPKWQ 114

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKMMVG 177
             ++            S    L  L     I    +HR+   A   + L    + +++  
Sbjct: 115 GKKMDTVELAKILFPMSLGFKLGDLAADLNIELANAHRADDDARATAELFKHCWKELLSL 174

Query: 178 GSQINFG 184
             Q+   
Sbjct: 175 -PQLTLE 180


>gi|227894158|ref|ZP_04011963.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047]
 gi|227864030|gb|EEJ71451.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047]
          Length = 318

 Score = 65.3 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 3/199 (1%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIETTGL    DRI E+GAV++ +    ++ +   +        P  +       E   
Sbjct: 36  LDIETTGLSPYRDRITELGAVKVRNNQIVDQ-YTNLVKFPKNNKVPAFITKLNGITEEQI 94

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                 +  +         +   I +N  FD+ F+    Q+ N   L+   +        
Sbjct: 95  VNEGIPAEQAIKEFREFIGDDPIIGYNVNFDLNFLYDLSQKYNLPVLNNDYVDVLRLARA 154

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191
                  N L    +R GI      +H  L DS     VY       ++       +  +
Sbjct: 155 YYPRERHNRLIDCMQRAGIA--QVEQHHGLADSLDTIKVYNDFNKHFTEELLEAARSRIK 212

Query: 192 FFKEEKKTVPNISLLKRDK 210
            F      +    L  R+ 
Sbjct: 213 NFDLTGDELDYYQLGFRNP 231


>gi|154333792|ref|XP_001563151.1| mitochondrial DNA polymerase I protein B [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134060163|emb|CAM45570.1| putative mitochondrial DNA polymerase I protein B [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 1419

 Score = 65.3 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FDIETTGL+   D I+E+    + D  + N TF   + P  R  SP  + +H IT+
Sbjct: 764 RIVFFDIETTGLNPSTDAIVEVA---MFDPIE-NSTFHTLVNPQ-RPISPRTVGIHHITN 818

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQN 91
           E ++D P+   +      +     
Sbjct: 819 EMVRDAPTVDVVAKSIGQYLRLDM 842


>gi|302334813|ref|YP_003800020.1| DNA polymerase III, epsilon subunit [Olsenella uli DSM 7084]
 gi|301318653|gb|ADK67140.1| DNA polymerase III, epsilon subunit [Olsenella uli DSM 7084]
          Length = 1001

 Score = 65.3 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 68/192 (35%), Gaps = 7/192 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGL  ++  +IEI A  +       R FQ F+ P G    PE   L  I+D 
Sbjct: 57  FVVLDTETTGLSFRDCELIEIAAARIRGGVVEER-FQTFVHPMG-PIPPEISALTHISDL 114

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D PS     +   +F        +AHNA FD  F+ +     +        +  +  
Sbjct: 115 DVTDAPSAVDAVAALSEFVAG--DPVLAHNATFDRTFVESVPGGRDVSDNWIDTLALSRI 172

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
              R    S + L  + + +G   +       +     +  + +  ++          + 
Sbjct: 173 ALPR---LSSHRLADMARAFGCDSATHRATADVEALAGMWRIMLVALMDLPSGLLDLLST 229

Query: 189 EDRFFKEEKKTV 200
                  + + +
Sbjct: 230 MHEEVDWQLRPI 241


>gi|229496202|ref|ZP_04389922.1| exonuclease [Porphyromonas endodontalis ATCC 35406]
 gi|229316780|gb|EEN82693.1| exonuclease [Porphyromonas endodontalis ATCC 35406]
          Length = 258

 Score = 65.3 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 8/172 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FDIE+TGL  + DRI+EI  +++  D  +  RT    L P       E+  +HGITD+
Sbjct: 10  VFFDIESTGLSPEKDRIVEISLIKVYPDGHEEVRT--RRLNPECH-IPEESTAVHGITDD 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P+F  +           +      N           L+   +      R ID  +
Sbjct: 67  DVRDCPTFRQVAKSLASMIQGCDIAGYNSNRFDVPLLGEEFLRADVEVDFSRCRFIDVQT 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           I  +              ++         H A  D+    +V    +    +
Sbjct: 127 IFHK----MERRTLEAAYKFYCDKDLTEAHSAEADTRATLEVLKAQLDRYPE 174


>gi|78065586|ref|YP_368355.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
 gi|77966331|gb|ABB07711.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
          Length = 378

 Score = 65.3 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG      RI EIG VE+     +  T+   + P G+   P   +L GI+DE 
Sbjct: 17  VFVDLETTGGSPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDEM 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           ++D PSF+S+    ++  +     ++AHNA FD GF
Sbjct: 74  VRDAPSFASLAPALFERLDG--KLFVAHNASFDRGF 107


>gi|134295037|ref|YP_001118772.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
 gi|134138194|gb|ABO53937.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 375

 Score = 65.3 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG      RI EIG VE+     +  T+   + P G+   P   +L GI+D+ 
Sbjct: 16  VFVDLETTGGSPAEHRITEIGVVEIGPGHMS--TWTTLVNP-GQPIPPFIQQLTGISDDM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           ++D PSF+S+    ++  +     ++AHNA FD GF
Sbjct: 73  VRDAPSFASLAPALFERLDG--KLFVAHNASFDRGF 106


>gi|260912251|ref|ZP_05918803.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260633685|gb|EEX51823.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 284

 Score = 65.3 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 4/182 (2%)

Query: 2   IRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  R  IVFD+ETTGLD  NDRII+I  +++    K  R   +F+ P G+    E  
Sbjct: 1   MKLNLTRPLIVFDLETTGLDLVNDRIIQISYIKVYPDGKEERE-NLFVYP-GKPIPDEVS 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GIT + ++D P+F  +     + F   +      N           L+         
Sbjct: 59  ELTGITTDLVEDAPTFEELAPRLNEVFKGCDFAGFNSNHFDIPMLAEEFLRAEIDFDFSS 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            R+ID  +I  +    +                  + H A  D+     V +  +   S+
Sbjct: 119 VRLIDAQTIFHKMEKRNLAAAYKFY-CGRKMEEDFAAHRADQDAEATYRVLLGELEKYSE 177

Query: 181 IN 182
            N
Sbjct: 178 AN 179


>gi|297620852|ref|YP_003708989.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU
           86-1044]
 gi|297376153|gb|ADI37983.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU
           86-1044]
          Length = 231

 Score = 65.3 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 7/167 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I +D ETTG+ +++DRI+EI A        +  + +  + P G     EA K+H ITD
Sbjct: 4   RPIFYDTETTGIKAEHDRIVEIAAY----DPISGCSLEELVNP-GIPIPKEASKVHHITD 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +KD P+F  +  +F +F    +   IAHN             + +   +   R  DTL
Sbjct: 59  DMVKDAPTFKEVGQKFIEF-CSGDVILIAHNNDNFDVHFLRHEFKRHALEMPEWRFFDTL 117

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             ARR  P          +    +I   + H AL D  +L  V+ KM
Sbjct: 118 KWARRYRPDLPRHALQFLREI-YSIEANNAHRALDDVIVLHKVFEKM 163


>gi|262204572|ref|YP_003275780.1| exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
           DSM 43247]
 gi|262087919|gb|ACY23887.1| Exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
           DSM 43247]
          Length = 590

 Score = 65.3 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 7/177 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG +++ DR++ +  + L    +    +   L P      P  + +H +T +
Sbjct: 10  WVLVDVETTGTNARRDRVLSLATMTLDYDGRVEDEYATLLNPG---CDPGPVHIHNLTRD 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P+F    S        +     AHNA FD GF+  E +R+        R+     
Sbjct: 67  RLHGAPTFDVTMSPLQQMLAGRTMV--AHNATFDHGFLVEEARRLGATLPIDHRLCTVTL 124

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             R +       L +L   +GI       H A  D   L++V+ + +     +    
Sbjct: 125 ARRLQLDVPNVKLGTLATYWGIRQRAA--HDARDDVRTLAEVFRRSLDLAETLGLRL 179


>gi|330444392|ref|YP_004377378.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58]
 gi|328807502|gb|AEB41675.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58]
          Length = 232

 Score = 65.3 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 8/172 (4%)

Query: 7   MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M  ++F D ETTG     DR+IEI A      S T  +F  ++ P       ++ K+HGI
Sbjct: 1   MSVLIFYDTETTGTQIDKDRVIEIAAY----NSSTKESFVTYVNPE-IPVPEDSSKIHGI 55

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   +   P+F   +  F  F    +     +N  FD+  +  E QR + +PL+   I  
Sbjct: 56  TTAMVSSAPTFPEAYHNFKQFCGSASILVAHNNDNFDLPLLQKECQRYSLEPLNLRTIDS 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                + +    +++L  L + YG        H AL D   L  V+  ++  
Sbjct: 116 LKWAKKYRPDLPKHNLQYLRQVYGFA--ENQAHRALDDVITLHKVFSALVGD 165


>gi|153006866|ref|YP_001381191.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030439|gb|ABS28207.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
          Length = 238

 Score = 65.3 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 55/182 (30%), Gaps = 4/182 (2%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLH 63
             M   V D E TGLD   D I+ IGAV + +        F     P    +  E + +H
Sbjct: 43  RTMTFTVLDCEMTGLDPARDEILSIGAVRIRNGRIVMAERFYQVFKPTEAVSPKEVILIH 102

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSR 122
           G+  + +               F  +        +          A  +  +        
Sbjct: 103 GLGPDEVSRGLPLGDALERLLAFIGDSVVIGHFTSVDLSFLNAALASRKERSLKNPALDT 162

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +      RR  P+ +   ++  +   I +       H A  D+     V++K++     
Sbjct: 163 RLLYAWWRRRTSPAGQAAADANLEDIVIEMGLPRYPAHHAFYDALTTGMVFLKLLGDFEA 222

Query: 181 IN 182
             
Sbjct: 223 SG 224


>gi|47458892|ref|YP_015754.1| DNA polymerase III PolC [Mycoplasma mobile 163K]
 gi|47458220|gb|AAT27543.1| DNA polymerase III alpha subunit [Mycoplasma mobile 163K]
          Length = 1433

 Score = 65.3 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 4/163 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL    D IIE GA ++L+      T Q F+ PN ++ S +   + GI ++
Sbjct: 400 YVVFDLETTGLSPIFDDIIEFGAQKILNGKVI-DTLQFFVKPN-KEISEKITLITGIKNQ 457

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++  S      +  +F  +      AHNA FD+ FIN ++++ N    +   I   + 
Sbjct: 458 DVENAISEKEALKKILEFMGDHTVV--AHNATFDMNFINEKIEKYNFQESNLQIIDTLVV 515

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               +  + +  L +L  R GI  +    H A  D+ +L+ V+
Sbjct: 516 SKIIEPEAKKFSLENLASRSGIIYNSTEAHRADYDADVLAKVW 558


>gi|78066765|ref|YP_369534.1| DNA-directed DNA polymerase [Burkholderia sp. 383]
 gi|77967510|gb|ABB08890.1| DNA-directed DNA polymerase [Burkholderia sp. 383]
          Length = 205

 Score = 65.3 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 8/170 (4%)

Query: 7   MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+ + V D ETTGL     DR  EI  + L D    +R FQ  +   GR+   + + L G
Sbjct: 1   MQTVAVLDFETTGLSPNMGDRATEIAVILLRDGQVVDR-FQSLMN-AGRRIPSDVVALTG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E +   P  S++  E   F  +     +AHNA FD  F     +             
Sbjct: 59  ITNEMIAAAPPASNVMKEAAAFVGK--HAVVAHNAGFDKRFWQ--SELGILGMSAEHAFA 114

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            T+ +ARR +P +++   S              H A++D+ +   ++ ++
Sbjct: 115 CTMLVARRIYPDAQSHRLSSLVDMLRLPKSGRAHRAMVDAEMAGHLWCRL 164


>gi|257887081|ref|ZP_05666734.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257895646|ref|ZP_05675299.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|293377743|ref|ZP_06623932.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium PC4.1]
 gi|257823135|gb|EEV50067.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257832211|gb|EEV58632.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|292643743|gb|EFF61864.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium PC4.1]
          Length = 1450

 Score = 65.3 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 16/225 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P    +      +      
Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    R          I     
Sbjct: 481 DEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEATNPVIDTLEL 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R  L  L K++G++      H A+ D+     +          +      +
Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 592

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
              +  +  + +      KR +P    I    L ++   ++ L K
Sbjct: 593 HMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 633


>gi|227551758|ref|ZP_03981807.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|227179063|gb|EEI60035.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
          Length = 1450

 Score = 65.3 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 16/225 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P    +      +      
Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    R          I     
Sbjct: 481 DEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEATNPVIDTLEL 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R  L  L K++G++      H A+ D+     +          +      +
Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 592

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
              +  +  + +      KR +P    I    L ++   ++ L K
Sbjct: 593 HMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 633


>gi|218680718|ref|ZP_03528615.1| dephospho-CoA kinase protein [Rhizobium etli CIAT 894]
          Length = 238

 Score = 65.3 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/28 (71%), Positives = 25/28 (89%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVEL 34
           MR+I+FD ETTGLD++ DRIIEIG +EL
Sbjct: 203 MREIIFDTETTGLDNRADRIIEIGGIEL 230


>gi|229816213|ref|ZP_04446523.1| hypothetical protein COLINT_03263 [Collinsella intestinalis DSM
           13280]
 gi|229808221|gb|EEP44013.1| hypothetical protein COLINT_03263 [Collinsella intestinalis DSM
           13280]
          Length = 977

 Score = 65.0 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 4/110 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D ETTGL  ++  +IEI A  L      +R F  F+ P+G     E  KL  IT+  
Sbjct: 48  IVLDTETTGLSHRDSELIEIAAARLRGREIVDR-FDTFVKPSG-LIPEEITKLTSITNVD 105

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +   PS     +   +F        +AHNA FD GFI       +   + 
Sbjct: 106 VAHAPSAVDAVASLAEFVGG--CPVVAHNAAFDRGFIEQVPGGADVSDIW 153


>gi|27383194|ref|NP_774723.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27356368|dbj|BAC53348.1| bll8083 [Bradyrhizobium japonicum USDA 110]
          Length = 304

 Score = 65.0 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL---LDYSK--TNRTFQVFLCPNGRKNSPEALKL 62
           R +  D+ETTGLD   D I+EI  V      D      + +F  F  P GR   PE   +
Sbjct: 46  RAVFIDLETTGLDPVADEIVEIAMVPFDYSDDGRIFAVHESFARFRDP-GRPIPPEVSAM 104

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GITD  +       +       F  +  A  +AHN  FD  F           P   S 
Sbjct: 105 TGITDAMVAGAAIEPAE---IEAFLGDTAALVVAHNCSFDRRFAERFCPAFAHLPWACSW 161

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
                        +    L + C  +    
Sbjct: 162 AEIPWREEGFVDGTKLVHLAAACGFFHEGH 191


>gi|15606258|ref|NP_213636.1| DNA polymerase III epsilon subunit [Aquifex aeolicus VF5]
 gi|6014995|sp|O67074|DPO3E_AQUAE RecName: Full=DNA polymerase III subunit epsilon
 gi|2983450|gb|AAC07031.1| DNA polymerase III epsilon subunit [Aquifex aeolicus VF5]
          Length = 202

 Score = 65.0 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 13/182 (7%)

Query: 3   RKNKMR-------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           +  KMR        +V D+E TG D +   +I++ AV +     T + F   + P G   
Sbjct: 6   KSLKMRDNLLDGTFVVIDLEATGFDVEKSEVIDLAAVRVEGGIITEK-FSTLVYP-GYFI 63

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
                KL GIT+  L  +P+   +  EF +F  +     + H  + D+ FIN   ++   
Sbjct: 64  PERIKKLTGITNAMLVGQPTIEEVLPEFLEFVGD--NIVVGHFVEQDIKFINKYTKQYRG 121

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                  +       +      +  L  + + +G        H AL D+ L ++++IK++
Sbjct: 122 KKFRNPSLCTLKLARKVFPGLKKYSLKEIAENFGFE--TNGVHRALKDATLTAEIFIKIL 179

Query: 176 VG 177
             
Sbjct: 180 EE 181


>gi|288932698|ref|YP_003436758.1| DNA polymerase III subunit epsilon [Ferroglobus placidus DSM 10642]
 gi|288894946|gb|ADC66483.1| DNA polymerase III, epsilon subunit [Ferroglobus placidus DSM
           10642]
          Length = 200

 Score = 65.0 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 84/196 (42%), Gaps = 9/196 (4%)

Query: 7   MRK---IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
           MR+    V D+ETTGL+ K D II I  + +       +  +   L P  R+   +++K 
Sbjct: 1   MREEKFAVVDVETTGLNVKKDEIISIAIIPMDGLKILFSEAYYRILKP--RRFKIDSVKY 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPS 121
           HGIT   +++ P+F  +  E  +  NE+     + N   +       E + + +      
Sbjct: 59  HGITPRMVEEAPTFCEVKEEILEKLNERIIVGYSINLDIEFLKKSFKECEVVFECKYVDI 118

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
             ++ L             L  L K+YG+ +++R  H AL D+++ + ++   ++   + 
Sbjct: 119 ADVEKLVGRLFGDYMKDVTLEDLAKKYGVDVAYR--HSALSDAYITAQIFQMQLLRLLKY 176

Query: 182 NFGFKTNEDRFFKEEK 197
                 +  R  K+E 
Sbjct: 177 GLRKFEDVLRAIKKED 192


>gi|227529135|ref|ZP_03959184.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350979|gb|EEJ41270.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           vaginalis ATCC 49540]
          Length = 960

 Score = 65.0 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 7/172 (4%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG      DRII++G V + D       F+  + P          +L GI +  
Sbjct: 27  VVDLETTGTSVNHGDRIIQVGCVLVQDGEII-NHFETKINP-RVAVPRHITQLTGIKNND 84

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ P F  I    +   +     ++AHN  FD  F+NAEL+R     L    I      
Sbjct: 85  VRNAPLFEDIAGTLYSLLSG--TIFVAHNVNFDFPFLNAELERAGYPSLSIKAIDTVTLS 142

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                      L  L     I   H   H A+ D+   + + + +M    ++
Sbjct: 143 QILMPTVKSYRLRDLTSSLSIEHDHP--HSAVSDAEATAHLLVDLMKQLREL 192


>gi|116491013|ref|YP_810557.1| DNA polymerase III, alpha subunit ( type) [Oenococcus oeni PSU-1]
 gi|116091738|gb|ABJ56892.1| DNA polymerase III, alpha subunit (gram-positive type) [Oenococcus
           oeni PSU-1]
          Length = 1437

 Score = 65.0 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 12/186 (6%)

Query: 2   IRKNKMRKI-------VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           I  N  R+I       +FDIETTGL + ND+II++ AV++ +      TF  F+ P G  
Sbjct: 396 IAINTNREILKDCQYTIFDIETTGLSAVNDKIIQLSAVKMKNGVVL-DTFDQFINP-GFP 453

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            S + + L GITD+ +K+    + +   F             HN              ++
Sbjct: 454 LSEQTINLTGITDDLVKNSKPEAEVLKMFQQ--FYARTILAGHNVIKFDYGFVNHALAVH 511

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           K P   + +IDTL++AR  +P+          +   +++    H A+ DS     +    
Sbjct: 512 KLPKINTLVIDTLNLARWLYPNFGRYTLDFLSKK-FSVNLEHHHRAIDDSTATGMLLHIF 570

Query: 175 MVGGSQ 180
           +    +
Sbjct: 571 LKEAEE 576


>gi|124485750|ref|YP_001030366.1| hypothetical protein Mlab_0928 [Methanocorpusculum labreanum Z]
 gi|124363291|gb|ABN07099.1| Exonuclease, RNase T and DNA polymerase III [Methanocorpusculum
           labreanum Z]
          Length = 228

 Score = 65.0 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 66/174 (37%), Gaps = 4/174 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + D ETTGL+ K DRI E+ A++            +           + + +        
Sbjct: 3   IVDTETTGLNPKIDRITELAAIKFDKYGNKSVMDEYISLPNDICYPENVQEMTGITPEIL 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK  P     +       +      + HNA+FD+ FI   L R      +   +IDTL+
Sbjct: 63  ELKGHPEEEIAWMFAMMLKSPGRVLLVTHNAQFDLRFIQEMLSRHRYVFPNGWGVIDTLT 122

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + R + P      +++   Y      ++ H A+ D   L  V+  M    + ++
Sbjct: 123 VFRDRKPQPHRLSDAI--SYYGLDGVKNSHRAIDDVVALCAVFDAMCQEQNDLD 174


>gi|86131778|ref|ZP_01050375.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
 gi|85817600|gb|EAQ38774.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
          Length = 257

 Score = 65.0 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 20/232 (8%)

Query: 2   IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           ++ N  R I  FD+ETTG++   DRI+EI  +++  D  +    F   + P         
Sbjct: 1   MQLNITRPICFFDLETTGVNVAKDRIVEISILKVFPDGRE--EEFTERINP-TVPIPAVT 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGI+D  + DKP+F+    E +D   + +      N           ++ + +  +D
Sbjct: 58  TAVHGISDADVADKPTFAERAKEIYDIIKDSDLAGFNSNRFDI----PLLVEELLRSGID 113

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                      +               ++       + H A  D+    +V    +    
Sbjct: 114 FDMKNRNAIDVQNIFHKMEQRTLVAAYKFYCDKDLTNAHSASADTWATYEVLKSQLDRYD 173

Query: 180 QINFGF-----------KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           ++                 +   F   +K  V   +  K        + ++E
Sbjct: 174 ELENDMKFLGDFSTRKRNADFAGFIGYDKDDVEIFTFGKHKGKKVEEVLEKE 225


>gi|254489685|ref|ZP_05102881.1| exonuclease family [Methylophaga thiooxidans DMS010]
 gi|224465094|gb|EEF81347.1| exonuclease family [Methylophaga thiooxydans DMS010]
          Length = 488

 Score = 65.0 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 4/106 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTG  +  DR+ EI  +E+ D     R +Q  L P  R   P   +L GITD  
Sbjct: 12  VILDCETTGGRASRDRLTEIALIEVEDGHVVKR-WQTLLNP-LRPIPPWITRLTGITDAT 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           + D P+F  I  E +   +      +AHNA+FD  F+    QR   
Sbjct: 70  VADAPTFDEIADELFACLDG--KVIVAHNARFDYSFLRQSFQRCGY 113


>gi|257898236|ref|ZP_05677889.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
 gi|257836148|gb|EEV61222.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
          Length = 1450

 Score = 65.0 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 16/225 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P    +      +      
Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    R          I     
Sbjct: 481 DEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLEL 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R  L  L K++G++      H A+ D+     +          +      +
Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 592

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
              +  +  + +      KR +P    I    L ++   ++ L K
Sbjct: 593 HMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 633


>gi|255542840|ref|XP_002512483.1| exonuclease, putative [Ricinus communis]
 gi|223548444|gb|EEF49935.1| exonuclease, putative [Ricinus communis]
          Length = 334

 Score = 65.0 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 70/202 (34%), Gaps = 12/202 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTG   + +RIIEI   +L      N TFQ  + P GR      +         
Sbjct: 135 IVFDLETTGFSREYERIIEIALQDLHGGE--NSTFQTLINP-GRIVPNSHIHGITTHMVC 191

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHN-AKFDVGFINAELQRINKDPLDPSRI 123
               P    +      +   +         +AHN   FDV F+  E +R   D       
Sbjct: 192 KPHVPRMEDLIPILLQYIRSRQKPGGYVLLVAHNGRSFDVPFLINEFKRSGVDVPCNWLF 251

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHR---SKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL +AR+   S    ++S  +        +   S H A+ D  LL+ ++  +      
Sbjct: 252 MDTLPLARKWMKSKGLKISSSLQGLREAFGIKLEGSAHRAMSDVRLLAKLFQMLTFNLKT 311

Query: 181 INFGFKTNEDRFFKEEKKTVPN 202
                        +        
Sbjct: 312 TLPSLVAESFTASELINVKKKK 333


>gi|289450465|ref|YP_003475243.1| DNA polymerase III subunit alpha, Gram-positive type [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289185012|gb|ADC91437.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 1495

 Score = 65.0 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 70/204 (34%), Gaps = 10/204 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  D+ETTGLD   +R+IEIGA + +       + + TF   L P  +      +KL G
Sbjct: 445 YVALDVETTGLDPVKERVIEIGAAKFVRNSSGEYEVSETFHRMLNPEVK-LPEFIMKLTG 503

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT   +           +  DF  +      AHNA FD+GFI AE  R         +  
Sbjct: 504 ITQAEVDSGIKPLQAVQDLIDFVGD--LPVCAHNAMFDIGFIRAEGFRTQDINDPKLKFN 561

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMMVGGSQI 181
                  R        L++                 H A+ D+     ++ +     S++
Sbjct: 562 PITIDTLRLSVLFWPSLSNHKLDTVCNFLQIDLAHHHRAVDDAIACGQIFARACQIDSEL 621

Query: 182 NFGFKTNEDRFFKEEKKTVPNISL 205
                       + E+ T      
Sbjct: 622 TLTSLNQRSGLLRPEEITDKEHKP 645


>gi|293608826|ref|ZP_06691129.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|299771039|ref|YP_003733065.1| ribonuclease T [Acinetobacter sp. DR1]
 gi|292829399|gb|EFF87761.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|298701127|gb|ADI91692.1| ribonuclease T [Acinetobacter sp. DR1]
 gi|325121407|gb|ADY80930.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse
           activity) [Acinetobacter calcoaceticus PHEA-2]
          Length = 220

 Score = 65.0 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 67/191 (35%), Gaps = 16/191 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54
           +V D+ET G +++ D ++EI  + ++            F   + P           +   
Sbjct: 24  VVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P       + ++            +E     +  +A  + HNA FD+GF+ A + R +
Sbjct: 84  IDPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFVQAAIARTS 143

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +P      +             + +  C + GI    +  H AL D+   ++++  
Sbjct: 144 TKNQNPFHSFSVMDTVTLSAVMFGQTVLAKACIQAGIEFDGKEAHSALYDTQKTAELFCY 203

Query: 174 MMVGGSQINFG 184
           ++   S     
Sbjct: 204 ILNKLSPYLLD 214


>gi|295092491|emb|CBK78598.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium cf. saccharolyticum K10]
 gi|295115331|emb|CBL36178.1| exonuclease, DNA polymerase III, epsilon subunit family
           [butyrate-producing bacterium SM4/1]
          Length = 251

 Score = 65.0 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 75/211 (35%), Gaps = 9/211 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D+ETTGLD K D+IIE+GA  +       R     + P+ R+ S     L GIT  
Sbjct: 18  YAAIDLETTGLDPKRDKIIEVGACLVEQGK-VKRELSFLINPH-REISERVELLTGITGR 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P    +  E   F  E     + H+  FD  F+                   +L 
Sbjct: 76  MVEHAPGIEEVIGEIAAFVGE--LPLLGHHVIFDYSFLKHAAVNAGLPFEKNGIDTLSL- 132

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             R   P  + +L++ C  + I     + H AL D+     +Y  +     Q N      
Sbjct: 133 CRRFMPPEEKKNLSAACGWFQIP--RETAHRALSDAKAAHLLYQSLRDCHFQENEEAFAA 190

Query: 189 E--DRFFKEEKKTVPNISLLKRDKPLFTRIT 217
           +      K E+          R+   + RI 
Sbjct: 191 KPLIYKVKREQPASKRQKEGLRELAKYHRIN 221


>gi|293570615|ref|ZP_06681666.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E980]
 gi|291609286|gb|EFF38557.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E980]
          Length = 1450

 Score = 65.0 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 16/225 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P    +      +      
Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            +    +AHNA FD+GF+N    R          I     
Sbjct: 481 DEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLEL 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R  L  L K++G++      H A+ D+     +          +      +
Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 592

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
              +  +  + +      KR +P    I    L ++   ++ L K
Sbjct: 593 HMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 633


>gi|260583917|ref|ZP_05851665.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
           700633]
 gi|260158543|gb|EEW93611.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
           700633]
          Length = 1441

 Score = 65.0 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 16/225 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +  ++ F+ F+ P    +   A  +      
Sbjct: 426 YVVFDVETTGLSAIYDSIIELAAVKMHKGNVIDK-FEEFIDPG---HPLSATTIQLTGIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            ++   +AHNA FD+GF+N   ++   +      I     
Sbjct: 482 DDMVRGSKSQAQVLKEFAAFTKDTILVAHNASFDMGFLNTGYEKEGLEKTTQPVIDTLEL 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + LN+L KRY +       H A+ DS     +    +            N
Sbjct: 542 SRLLHPHLKSHRLNTLAKRYNVA--LEQHHRAVFDSETTGHLCHIFLKEA--------AN 591

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           +      ++                   T     +H   ++ L K
Sbjct: 592 DHGLIYHDQLNTNLHPEEVFKNGRPFHATI--FAKHQAGLKELFK 634


>gi|169827550|ref|YP_001697708.1| ATP-dependent helicase dinG [Lysinibacillus sphaericus C3-41]
 gi|168992038|gb|ACA39578.1| Probable ATP-dependent helicase dinG [Lysinibacillus sphaericus
           C3-41]
          Length = 923

 Score = 65.0 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 74/187 (39%), Gaps = 10/187 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M+   K    + D+ETTG      DR+I+I  V + D  +  RT+  F+ P G+      
Sbjct: 1   MMESQK--YAIVDLETTGHSPANGDRMIQIAIVIMKD-WEIERTYTKFINP-GKAIPTFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             L  IT+E +KD   F       ++   +    ++AHNA FD+ F+ AE +R       
Sbjct: 57  QDLTHITNEDVKDSYPFEEHADYIYELLAD--CVFVAHNADFDLSFLQAEFKRAGLPKWQ 114

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKMMVG 177
             ++            S    L  L     I    +HR+   A   + L    + +++  
Sbjct: 115 GKKMDTVELAKILFPMSLGFKLGDLAADLNIELANAHRADDDARATAELFKCCWKELLSL 174

Query: 178 GSQINFG 184
             Q+   
Sbjct: 175 -PQLTLE 180


>gi|319440229|ref|ZP_07989385.1| putative exonuclease [Corynebacterium variabile DSM 44702]
          Length = 186

 Score = 65.0 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
          +V D ETTGLD  +DRIIE+ A+ + +       F   + P GR        L G+TD+ 
Sbjct: 22 VVVDCETTGLDPDSDRIIEVAALRVREGRPVA-LFHRVVDP-GRPLPGFITSLTGLTDQQ 79

Query: 70 LKDKPS 75
          ++  P 
Sbjct: 80 VRQAPP 85


>gi|332291046|ref|YP_004429655.1| Exonuclease RNase T and DNA polymerase III [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169132|gb|AEE18387.1| Exonuclease RNase T and DNA polymerase III [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 257

 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 74/210 (35%), Gaps = 9/210 (4%)

Query: 2   IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           ++    R I  FD+ETTG++   DRI+EI  +++  D  +    F   + P         
Sbjct: 1   MQLKITRPICFFDLETTGINVAKDRIVEISILKVFPDGRE--EEFTERINP-TVPIPAAT 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGI+D  + DKP+F++   + +D   + +      N           ++ + +  +D
Sbjct: 58  TAVHGISDADVVDKPTFAARAKDVYDIIKDADLAGFNSNRFDI----PLLVEELLRSGID 113

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                      +               ++       + H A  D+    +V    +    
Sbjct: 114 FDMKNRNAIDVQNIFHKMEQRTLVAAYKFYCGKDLTNAHSASADTWATYEVLKSQLDRYD 173

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
           ++    K   D   ++++          +D
Sbjct: 174 ELENDMKFLGDFSTRKKQADFAGFIGYDKD 203


>gi|306835084|ref|ZP_07468126.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC
           49726]
 gi|304569032|gb|EFM44555.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC
           49726]
          Length = 231

 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTG++ + DRIIE+ AV    +     ++   L P+G+    +   +HGIT++
Sbjct: 31  FAVIDTETTGVNKRYDRIIELAAVRADAHFNPVDSWHTLLSPDGKAI--KNSHIHGITND 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
            +   P+FS ++ +F  + +      +AHNA FD   I
Sbjct: 89  MVATAPTFSDVYGDFTSYIDGMQ--LLAHNAPFDSKMI 124


>gi|283796625|ref|ZP_06345778.1| DNA polymerase III PolC-type [Clostridium sp. M62/1]
 gi|291076048|gb|EFE13412.1| DNA polymerase III PolC-type [Clostridium sp. M62/1]
          Length = 251

 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 75/211 (35%), Gaps = 9/211 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D+ETTGLD K D+IIE+GA  +       R     + P+ R+ S     L GIT  
Sbjct: 18  YAAIDLETTGLDPKRDKIIEVGACLVEQGK-VKRELSFLINPH-REISERVELLTGITGR 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P    +  E   F  E     + H+  FD  F+                   +L 
Sbjct: 76  MVEHAPGIEEVIGEIAAFVGE--LPLLGHHVIFDYSFLKHAAVNAGLPFEKNGIDTLSL- 132

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             R   P  + +L++ C  + I     + H AL D+     +Y  +     Q N      
Sbjct: 133 CRRFMPPEEKKNLSAACGWFQIP--RETAHRALADAKAAHLLYQSLRDCHFQENEEAFAA 190

Query: 189 E--DRFFKEEKKTVPNISLLKRDKPLFTRIT 217
           +      K E+          R+   + RI 
Sbjct: 191 KPLIYKVKREQPASKRQKEGLRELAKYHRIN 221


>gi|206560423|ref|YP_002231187.1| putative exonuclease [Burkholderia cenocepacia J2315]
 gi|198036464|emb|CAR52360.1| putative exonuclease [Burkholderia cenocepacia J2315]
          Length = 205

 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 8/170 (4%)

Query: 7   MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+ + V D ETTGL     DR  EI  + L D    +R FQ  +   GR+   + + L G
Sbjct: 1   MQTVAVLDFETTGLSPNLGDRATEIAVILLRDGEVVDR-FQSLMN-AGRRIPSDVVALTG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT++ +   P  S +  E   F  +     +AHNA FD  F     +             
Sbjct: 59  ITNDMIAAAPPASEVMKEAAAFVGK--HAVVAHNAGFDKRFWQ--SELGLLGMSADHAFA 114

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            T+ +ARR +P +R+   S              H A++D+ +   ++ ++
Sbjct: 115 CTMLVARRIYPDARSHRLSSLIEMLRLPQSGRAHRAMVDAEMAGHLWCRL 164


>gi|291531228|emb|CBK96813.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium siraeum 70/3]
          Length = 458

 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 7/189 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNG--RKNSPEALKLHGI 65
            +V+D+ETTGL+S+   +I+IGAV+++D      +TF+  + P       S    K+ GI
Sbjct: 271 FVVYDLETTGLNSEFHAVIQIGAVKVVDGVVDESQTFEELVNPKYSKVSVSDNITKITGI 330

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE  K+      +  EF  F  +       + A        A              I+ 
Sbjct: 331 TDEEAKNARQVWEVIPEFVKFIGDDTLAGFNNAAFDSKFLERAGRHSNIIITNKQFDIMK 390

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                ++K     N            I +   H AL D+   + VYIK+     Q++ G 
Sbjct: 391 YAKRIKKKCNLEINGDELNNYAEYFGIKNEKAHTALSDAITTAKVYIKL----RQLDEGK 446

Query: 186 KTNEDRFFK 194
            ++E+    
Sbjct: 447 SSSENDGLD 455


>gi|240144403|ref|ZP_04743004.1| putative DNA polymerase III, alpha chain [Roseburia intestinalis
           L1-82]
 gi|257203586|gb|EEV01871.1| putative DNA polymerase III, alpha chain [Roseburia intestinalis
           L1-82]
          Length = 235

 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 87/216 (40%), Gaps = 16/216 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+E TGL++K D I+E+GAV + ++   ++ F   LC    K   +  +L GIT+ 
Sbjct: 4   YVVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDK-FGAILC-QNVKIPEKVTELTGITEA 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++          +F++F  E     +  N  FD GF+       N      +     L+
Sbjct: 62  MVQGGMEKEEAMRQFFEFIGE--DIIVGQNVIFDYGFLKQWAVNHNMPLERSAVDTLKLA 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    + DL SLC  +G+     + H A  D++    +Y  +     + + G    
Sbjct: 120 RKFLPK-EQKKDLESLCAYFGVK--RENAHRAFDDAYETWQIYEALRERYEEESAGDFMP 176

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
           +   +K +K+T      +K  +         E   H
Sbjct: 177 KPLLYKAKKQTPATARQIKYLR---------EYAAH 203


>gi|116333503|ref|YP_795030.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367]
 gi|116098850|gb|ABJ63999.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367]
          Length = 948

 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 7/176 (3%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V DIETTG      DRII+IG V  + +++    F+  + P  ++      +L GIT+
Sbjct: 7   YAVVDIETTGTSVTDGDRIIQIGCV-FVQHNQVINHFETDVNP-LKEIPAAISRLTGITN 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++  P F  +    +      N  ++AHN  FD+ FINAEL+R+    L  + +    
Sbjct: 65  KRVRHAPLFDDVAGTLYSLL--TNTVFVAHNVNFDLPFINAELERVGYPALPIAAVDTVS 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                   ++   L  L + + I     + H A  D+   ++++I +      +  
Sbjct: 123 LSQILLPTATSFRLRDLSRLFNIEH--DNPHSADSDASATAELFIFLFRRLRALPM 176


>gi|116492693|ref|YP_804428.1| Rad3-related DNA helicase [Pediococcus pentosaceus ATCC 25745]
 gi|116102843|gb|ABJ67986.1| Rad3-related DNA helicase [Pediococcus pentosaceus ATCC 25745]
          Length = 929

 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 7/180 (3%)

Query: 5   NKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           NK +  V D+E TG D   D RII+IG   + +      TFQ  + P  R       KL 
Sbjct: 2   NKTKYAVVDLEMTGSDFDGDNRIIQIGCAFVENGKIV-DTFQSKVNPQ-RPIPAGITKLT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITDE +++ P F+ I  E +    +    ++AHN +FD  F+N EL R     L+   +
Sbjct: 60  GITDEQVQNAPKFNDIVDEVYRKLVD--TVFVAHNVEFDFPFLNQELVRSGYPELNIPAV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                       +    L  L     I       H A  D+   +++ I +     Q+  
Sbjct: 118 DTVSLSQIVFSFTKGYRLRDLTSYLKIEH--DDPHSADSDAIATANLLIAIKKNLQQLPI 175


>gi|315644054|ref|ZP_07897224.1| DNA polymerase III subunit epsilon [Paenibacillus vortex V453]
 gi|315280429|gb|EFU43718.1| DNA polymerase III subunit epsilon [Paenibacillus vortex V453]
          Length = 397

 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 69/217 (31%), Gaps = 3/217 (1%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +  VFD+E T    +N  ++EIGAV +     +  +TF  ++ P+G           GI 
Sbjct: 24  KFCVFDLEATDDQVENAEVVEIGAVRMDSTGIQEEQTFHTYIKPSG-PIPQPIAVSTGIY 82

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  P F   +  F  F NE                     +    +P +P   I  
Sbjct: 83  NADVEGSPRFPKGYGMFTGFANECIFVTYGGYEFVLPLLQRECARHGLPEPANPCIDIKA 142

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185
           +             +  +   YG   +       + +  L+  +++ MM      +    
Sbjct: 143 MFAGLHPEVEDEITMEMMMDYYGFETTSHKSGNRIGNYMLIGHIWMDMMQELKARSIQHL 202

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
           +  E    K  +            K  F  +T  +  
Sbjct: 203 EYPEPLIVKRFQHPSKRSVDTGSRKVRFPALTDSQRK 239


>gi|302533719|ref|ZP_07286061.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
 gi|302442614|gb|EFL14430.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
          Length = 332

 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 8/163 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+      L         +   + P   +  P    +HG+T  
Sbjct: 27  YAVVDVETTGL-ARDDRIVSAAVYRLDAQGNVEDHWYTLVNP---RRDPGPTWIHGLTSA 82

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P F+ I  EF     +     +AHNA FD   I  E  R +       R+     
Sbjct: 83  MLQDAPLFADIAEEFAGRLAD--RVLVAHNAIFDWQMIAREYARASATAPVRQRLCTIAL 140

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                 P   + L SL   YG+       H AL D+ +L++ +
Sbjct: 141 SKELNLPLPNHKLESLAAHYGVVQQRA--HHALDDARVLAEAF 181


>gi|118586857|ref|ZP_01544291.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163]
 gi|290890494|ref|ZP_06553569.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429]
 gi|118432689|gb|EAV39421.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163]
 gi|290479890|gb|EFD88539.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429]
          Length = 1437

 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 12/186 (6%)

Query: 2   IRKNKMRKI-------VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           I  N  R+I       +FDIETTGL + ND+II++ AV++ +      TF  F+ P G  
Sbjct: 396 IAINTNREILKDCQYTIFDIETTGLSAVNDKIIQLSAVKMKNGVVL-DTFDQFINP-GFP 453

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            S + + L GITD+ +K+    + +   F             HN              ++
Sbjct: 454 LSEQTINLTGITDDLVKNSKPEAEVLKMFQQ--FYAGTILAGHNVIKFDYGFVNHALAVH 511

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           K P   + +IDTL++AR  +P+          +   +++    H A+ DS     +    
Sbjct: 512 KLPKINTLVIDTLNLARWLYPNFGRYTLDFLSKK-FSVNLEHHHRAIDDSTATGMLLHIF 570

Query: 175 MVGGSQ 180
           +    +
Sbjct: 571 LKEAEE 576


>gi|302880064|ref|YP_003848628.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
 gi|302582853|gb|ADL56864.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
          Length = 204

 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 8/175 (4%)

Query: 7   MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M  + V D ETTG+  +  DR  E+  V + D   ++R +Q  +   G    P    L G
Sbjct: 1   METVAVIDFETTGMSPELGDRATEVAVVIVSDGKISSR-YQSLMN-TGAYIPPFIEDLTG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I++E ++  P  + +  E  DF     A W+AHNA FD  F++AE  R+           
Sbjct: 59  ISNEMIRQAPPAAQVMKELADFVGA--APWVAHNASFDSRFLDAEWSRMGHR--REQAFA 114

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            ++ +ARR +P S N       R+         H AL D+ + + ++++M+    
Sbjct: 115 CSMLLARRLYPDSPNHKLGTLVRFLGLPDTARHHRALADAEMTAHLWLRMVSDLK 169


>gi|150020376|ref|YP_001305730.1| DNA polymerase III, epsilon subunit [Thermosipho melanesiensis
          BI429]
 gi|149792897|gb|ABR30345.1| DNA polymerase III, epsilon subunit [Thermosipho melanesiensis
          BI429]
          Length = 184

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 1  MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNR-TFQVFLCPNGR 53
          MI +N     V D ETTGL+    DRIIE+  V +          +   + P+ +
Sbjct: 1  MIDENV--YCVLDTETTGLNPYFGDRIIEVAIVPIYKGKIIESWIYHSLVNPHIK 53


>gi|227529104|ref|ZP_03959153.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540]
 gi|227350948|gb|EEJ41239.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540]
          Length = 1442

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL +  D++IE+ A ++ D     R F  F+ P G   S +   L  ITDE
Sbjct: 425 YVIFDVETTGLSAIYDKVIELSASKMKDGEVLER-FDEFIDP-GFPLSEQTTNLTSITDE 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   S   +F  F DF          HN  FD+GF+N   +R N + +    I     
Sbjct: 483 MVQGSKSEEEVFRMFRDFCEG--CIIAGHNVSFDMGFMNTGYRRHNMEEITAPVIDTLPL 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                       LN+L K++ + + H   H A  D+     +    +    +
Sbjct: 541 ARFLYPHMRGYRLNTLSKKFKVALEH--HHRANYDAEATGKLLHIFLKDAEK 590


>gi|37526494|ref|NP_929838.1| ribonuclease T [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|54036329|sp|Q7N3W0|RNT_PHOLL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|36785925|emb|CAE14977.1| ribonuclease T [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 217

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L    +       +    + P  G    P AL+  G
Sbjct: 20  VVIDVETGGFNAKTDALLEIAAVTLEMDGEGWLTPGESLHFHIEPFEGANLEPAALEFTG 79

Query: 65  ITD--------EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +     +   A  +AHNA FD  F+ A  +R    
Sbjct: 80  IDPLNPLRGAVSEYEALHAIFKMVRKGIKNNHCNRAIIVAHNANFDHSFVMAATERTGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI   +   H AL D+   ++++ +M+ 
Sbjct: 140 RNPFHPFATFDTAALGGLVLGQTILAKACITAGIPFDNNQAHSALYDTDRTAELFCEMVN 199

Query: 177 GGSQIN 182
              Q+ 
Sbjct: 200 RWKQLG 205


>gi|317125104|ref|YP_004099216.1| DNA polymerase III subunit epsilon [Intrasporangium calvum DSM
           43043]
 gi|315589192|gb|ADU48489.1| DNA polymerase III, epsilon subunit [Intrasporangium calvum DSM
           43043]
          Length = 590

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 61/203 (30%), Gaps = 4/203 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+E+TG       I EIGAV++         FQ  + P           L GITD 
Sbjct: 20  FVVVDLESTGGSPAQCGITEIGAVKVRGGDVIGE-FQTLVNP-AEPIPAFISVLTGITDA 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   S F  F +      +  +AHNA FD+ F+ A   R          +     
Sbjct: 78  MVADSPRIESAFPAFLE--FAAGSVLVAHNAGFDISFLKAAAVRTGTPWPGFDVLDTLTL 135

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             +        +                 H AL D+    DV   ++     +       
Sbjct: 136 ARQLVTRDEVPNHKLSSLARVFASPTTPDHRALHDARATVDVLHGLIERVGNLGVHTLEE 195

Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211
              +             L    P
Sbjct: 196 LASYTSRVSPAQRRKRFLADALP 218


>gi|150018035|ref|YP_001310289.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
           8052]
 gi|149904500|gb|ABR35333.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
           8052]
          Length = 1446

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 80/206 (38%), Gaps = 7/206 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG   + ++I EIG +++ D    ++ F  F+ P  +      +++  ITD+
Sbjct: 423 YCVLDLETTGFSPQTEKITEIGVMKIKDGKVIDK-FSTFVNPQ-KSIPMRVVEVTKITDD 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+  +   +F +  +F     +  +AHNA FD+GF+    + +  +          L+
Sbjct: 481 MVKNAETIDKVFPKLLEFIEG--SVLVAHNADFDIGFLKHNAKVLGYEFDFTYIDTLGLA 538

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   S            + I     H AL D      V+  ++    +      ++
Sbjct: 539 QDVFPDYKSYKL---GRIAKNLGIKVEVAHRALDDVDTTVKVFNIIIEKLKERGAQTLSD 595

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
            D +  +E+        +K    +  
Sbjct: 596 IDLYAADEEAKKVAYKKVKTHHAIIL 621


>gi|319953453|ref|YP_004164720.1| DNA polymerase iii, alpha subunit [Cellulophaga algicola DSM 14237]
 gi|319422113|gb|ADV49222.1| DNA polymerase III, alpha subunit [Cellulophaga algicola DSM 14237]
          Length = 1479

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 76/250 (30%), Gaps = 31/250 (12%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R I+I      D           + P+G     +
Sbjct: 2   YLIFDTETTGLPKRWDVPFTDTDNWPRCIQIAWQLHDDMGNLIEHQDYLVQPDGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A ++HGI+    + K    ++  E ++    +    +  N  FD+  + AE  R+  +  
Sbjct: 62  AEQIHGISTALAEQKGVPLAVVLEKFNEAMAKTKFVVGQNVGFDLNIMGAEFHRMGVENP 121

Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                +                           +    Y   +     H A  D    + 
Sbjct: 122 LQELPVLDTCTEHTATLCQIPGGRGGKFKLPTLTELHHYLFGVGFGEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
            +++++              D F    +     I L+        + +           +
Sbjct: 182 CFLELVRKQQYTIEKLDVQPDYFKNFSEANPQEIQLIGLKHINLKKAS-----------K 230

Query: 230 TLGKNAIWDR 239
            +  +A+WD+
Sbjct: 231 KIA-DALWDK 239


>gi|225374652|ref|ZP_03751873.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM
           16841]
 gi|225213511|gb|EEG95865.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM
           16841]
          Length = 228

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 61/180 (33%), Gaps = 10/180 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTG     D +IEI AV++         F   + P  R     A  ++ I+DE
Sbjct: 17  YVLFDLETTGTSCIYDEVIEISAVKVRSGKVV-EEFSQLVNPK-RPIPYAASMVNHISDE 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++P F  +  EF       +   + HN +                    +  +DTL 
Sbjct: 75  MVANEPDFGQVLPEFLT--FAGDDILVGHNIQTFDMKFLYRDCERLFQQKLTNDYVDTLR 132

Query: 129 IARRKHPSSRNDL------NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +A+   P  R+        +      G   +             L+    KM     Q  
Sbjct: 133 VAKLCFPEWRHRRLSDLAEHYGISTRGAHRALTDCKMNQQVFEYLAKELEKMPAAKKQSK 192


>gi|326332133|ref|ZP_08198417.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium
           Broad-1]
 gi|325950104|gb|EGD42160.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium
           Broad-1]
          Length = 228

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 61/177 (34%), Gaps = 5/177 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGLD   DR+I++   ++         ++  + P G    P  +++HG+T  
Sbjct: 29  FAVLDVETTGLDPYRDRVIQVAIRQIAADGTAESEWETLVNP-GAGVDPGPVEVHGLTTA 87

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  + +   +    +          +    + ++   +  + LD    +    
Sbjct: 88  DLAGAPPFRDVAATIAERLAGRVFVAHNAAFDWAFVAVESDRAGVRLEVLDWLCTMRFAK 147

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                 P       +        +     H A  D+ + +++ ++ +    +     
Sbjct: 148 ALALDVPDKSLATIAAY----YAVEQLKAHDAGDDTRVAAEILLRELADADRAGLML 200


>gi|193076779|gb|ABO11496.2| ribonuclease T [Acinetobacter baumannii ATCC 17978]
          Length = 220

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 16/191 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54
           +V D+ET G +++ D ++EI  + ++            F   + P           +   
Sbjct: 24  VVVDVETAGFNAQTDALLEIACIPIVYNAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P       + ++            +E     +  +A  + HNA FD+GF+ A + R  
Sbjct: 84  IDPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFLQAAIARSG 143

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +P      +             + +  C + GI    +  H AL D+   ++++  
Sbjct: 144 TKNQNPFHSFSVMDTVTLSAVMFGQTVLAKACIQAGIEFDGKEAHSALYDTQKTAELFCY 203

Query: 174 MMVGGSQINFG 184
           ++   S     
Sbjct: 204 ILNKLSPYLLD 214


>gi|169633084|ref|YP_001706820.1| ribonuclease T [Acinetobacter baumannii SDF]
 gi|169796663|ref|YP_001714456.1| ribonuclease T [Acinetobacter baumannii AYE]
 gi|184157422|ref|YP_001845761.1| ribonuclease T [Acinetobacter baumannii ACICU]
 gi|213156111|ref|YP_002318531.1| ribonuclease T [Acinetobacter baumannii AB0057]
 gi|215484153|ref|YP_002326378.1| ribonuclease T [Acinetobacter baumannii AB307-0294]
 gi|239503321|ref|ZP_04662631.1| ribonuclease T [Acinetobacter baumannii AB900]
 gi|260550758|ref|ZP_05824966.1| ribonuclease T [Acinetobacter sp. RUH2624]
 gi|260557371|ref|ZP_05829586.1| ribonuclease T [Acinetobacter baumannii ATCC 19606]
 gi|301347763|ref|ZP_07228504.1| ribonuclease T [Acinetobacter baumannii AB056]
 gi|301512246|ref|ZP_07237483.1| ribonuclease T [Acinetobacter baumannii AB058]
 gi|301596674|ref|ZP_07241682.1| ribonuclease T [Acinetobacter baumannii AB059]
 gi|332854542|ref|ZP_08435420.1| ribonuclease T [Acinetobacter baumannii 6013150]
 gi|332870163|ref|ZP_08439075.1| ribonuclease T [Acinetobacter baumannii 6013113]
 gi|332875101|ref|ZP_08442937.1| ribonuclease T [Acinetobacter baumannii 6014059]
 gi|169149590|emb|CAM87480.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse
           activity) [Acinetobacter baumannii AYE]
 gi|169151876|emb|CAP00718.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse
           activity) [Acinetobacter baumannii]
 gi|183209016|gb|ACC56414.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU]
 gi|213055271|gb|ACJ40173.1| ribonuclease T [Acinetobacter baumannii AB0057]
 gi|213986450|gb|ACJ56749.1| ribonuclease T [Acinetobacter baumannii AB307-0294]
 gi|260406264|gb|EEW99748.1| ribonuclease T [Acinetobacter sp. RUH2624]
 gi|260408997|gb|EEX02300.1| ribonuclease T [Acinetobacter baumannii ATCC 19606]
 gi|322507302|gb|ADX02756.1| Ribonuclease T [Acinetobacter baumannii 1656-2]
 gi|323517321|gb|ADX91702.1| ribonuclease T [Acinetobacter baumannii TCDC-AB0715]
 gi|332727951|gb|EGJ59346.1| ribonuclease T [Acinetobacter baumannii 6013150]
 gi|332732430|gb|EGJ63686.1| ribonuclease T [Acinetobacter baumannii 6013113]
 gi|332736718|gb|EGJ67709.1| ribonuclease T [Acinetobacter baumannii 6014059]
          Length = 220

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 16/191 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54
           +V D+ET G +++ D ++EI  + ++            F   + P           +   
Sbjct: 24  VVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P       + ++            +E     +  +A  + HNA FD+GF+ A + R  
Sbjct: 84  IDPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFLQAAIARSG 143

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +P      +             + +  C + GI    +  H AL D+   ++++  
Sbjct: 144 TKNQNPFHSFSVMDTVTLSAVMFGQTVLAKACIQAGIEFDGKEAHSALYDTQKTAELFCY 203

Query: 174 MMVGGSQINFG 184
           ++   S     
Sbjct: 204 ILNKLSPYLLD 214


>gi|296533190|ref|ZP_06895816.1| exonuclease RNase T and DNA polymerase III [Roseomonas cervicalis
           ATCC 49957]
 gi|296266484|gb|EFH12483.1| exonuclease RNase T and DNA polymerase III [Roseomonas cervicalis
           ATCC 49957]
          Length = 304

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 79/239 (33%), Gaps = 33/239 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL---LDYSK--TNRTFQVFLCPNGRKNSPEALKLHGI 65
           V D+ETTGLD   D IIE+  +     LD +       F     P  R   PE   L G+
Sbjct: 52  VLDVETTGLDHGQDEIIELAMLPFTYGLDGTLYSVGEAFSRLRQP-ARPIPPEVTALTGL 110

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD  +  +    S   E    F    A  IAHNA FD  F     +    D         
Sbjct: 111 TDAMVAGQ----SFTPEEVAAFIGPAALVIAHNAGFDRRFA----EAFCPDFAAKPWACS 162

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV------------YIK 173
              +           L  L  R+G+       H A+ D     ++             ++
Sbjct: 163 LHGVDWAAEGFEGRRLGDLAARHGLFF---DGHRAVHDCQATLEILARPLPRSGVPALVR 219

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVP----NISLLKRDKPLFTRITKEELDEHDKTI 228
           ++    + ++        F  +++        N     R +  +  + +E+L+     +
Sbjct: 220 LLEAARRPSWRIWAEGAPFAAKDRLKARGYRWNGEANGRPRAWYIEVAEEQLEAETAFL 278


>gi|254774974|ref|ZP_05216490.1| hypothetical protein MaviaA2_09919 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 648

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +V D+ETTG  S +      D I EIGAV++ D       F   + P  R   P+ ++L
Sbjct: 45  FVVVDLETTGGRSTSTGETAPDAITEIGAVKVRDGVVLGE-FATLVDPQ-RSIPPQIMRL 102

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            GIT   + D P+  ++   F +F      A  +AHNA FDVGF+ A  Q+ +     P 
Sbjct: 103 TGITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRPR 162

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +       R         +          ++ +  H AL D+    DV   ++  
Sbjct: 163 VLCTVRLARRVLSREEAPSVRLASLARLFAVTTQPTHRALDDARATVDVLHALIER 218


>gi|210621010|ref|ZP_03292395.1| hypothetical protein CLOHIR_00338 [Clostridium hiranonis DSM 13275]
 gi|210154994|gb|EEA86000.1| hypothetical protein CLOHIR_00338 [Clostridium hiranonis DSM 13275]
          Length = 276

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 4/104 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTGL++  + I EI A++          F  ++ P  +    +   L GIT+E
Sbjct: 96  YIVFDLETTGLEAHKEAITEIAAIKFDYDEPV-EYFHTYVNPKKKIR-EKITDLTGITNE 153

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            +   P    +   F  F ++     I+HN  FD+ FI   +  
Sbjct: 154 MVASAPPIEYVLPNFLKFIDK--YTLISHNVSFDMSFILDPMYN 195


>gi|118466522|ref|YP_881505.1| hypothetical protein MAV_2300 [Mycobacterium avium 104]
 gi|118167809|gb|ABK68706.1| DNA polymerase III, epsilon subunit [Mycobacterium avium 104]
          Length = 643

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +V D+ETTG  S +      D I EIGAV++ D       F   + P  R   P+ ++L
Sbjct: 40  FVVVDLETTGGRSTSTGETAPDAITEIGAVKVRDGVVLGE-FATLVDPQ-RSIPPQIMRL 97

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            GIT   + D P+  ++   F +F      A  +AHNA FDVGF+ A  Q+ +     P 
Sbjct: 98  TGITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRPR 157

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +       R         +          ++ +  H AL D+    DV   ++  
Sbjct: 158 VLCTVRLARRVLSREEAPSVRLASLARLFAVTTQPTHRALDDARATVDVLHALIER 213


>gi|71894029|ref|YP_278137.1| DNA polymerase III PolC [Mycoplasma synoviae 53]
 gi|71850817|gb|AAZ43426.1| DNA polymerase III alpha subunit [Mycoplasma synoviae 53]
          Length = 1451

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 3/199 (1%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFDIETT L + +  IIE  A  + + +  ++   +F+    + +           +
Sbjct: 410 RYVVFDIETTSLSAYHGEIIEFAATIIENKAVVDKV-DIFIKSKEKLSHFTTRLTSITNE 468

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              +          + +D     N   +AHNA FD  F+  +  + N      + I   +
Sbjct: 469 MLDQKGIELKEALQKIYDVL--NNNVAVAHNANFDYNFLIEKFDQNNMQAPKCTFIDSLV 526

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                     +++LN  C+   +       H AL D+ +L+D +I+  +    I      
Sbjct: 527 VSRILFEHRDKHNLNEFCRNLSVNYDTEKAHRALYDTEVLADAWIEATLKLKDIKQISNF 586

Query: 188 NEDRFFKEEKKTVPNISLL 206
            E   +K +       SL 
Sbjct: 587 QELSEYKSDALFSKYFSLY 605


>gi|34541463|ref|NP_905942.1| exonuclease [Porphyromonas gingivalis W83]
 gi|34397780|gb|AAQ66841.1| exonuclease [Porphyromonas gingivalis W83]
          Length = 259

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 8/171 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I FD+ETTG+D   DRI+EI  ++++ D S+  +T    + P  R   PE+  +HGI DE
Sbjct: 10  IFFDLETTGVDLVRDRIVEISILKVMPDGSEECKT--RRINPE-RPIPPESTAIHGIRDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P F S+      +    +              +   L+      L   ++ID  +
Sbjct: 67  DVKDCPPFRSVAKSLAQWIEGCDLAGFNSTRFDVPMLVEEFLRAGVDIDLRHRKLIDVQT 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           I  +  P           R+    +  + H A  D+    DV+   +    
Sbjct: 127 IFHKMEP----RTLEAATRFYCNRTLENAHSAEADTRATYDVFKAQLDRYE 173


>gi|326803355|ref|YP_004321173.1| putative DNA polymerase III, epsilon subunit [Aerococcus urinae
          ACS-120-V-Col10a]
 gi|326650663|gb|AEA00846.1| putative DNA polymerase III, epsilon subunit [Aerococcus urinae
          ACS-120-V-Col10a]
          Length = 173

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTGL   + +II+I AV   D  +    F   + P+ R    +  +L GI+D 
Sbjct: 13 YVAFDLETTGLGFSS-KIIQISAVHFRDGKEIG-AFDQLVNPD-RPIPAKITQLTGISDA 69

Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97
           +   P+   +  +F  F  +        
Sbjct: 70 DVYLSPTIDQVIHDFMAFIKDLPLAGYNS 98


>gi|262365379|gb|ACY61936.1| DNA polymerase III, epsilon chain [Yersinia pestis D182038]
          Length = 122

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G + + F  +  
Sbjct: 1   MARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLTFSMEGE 60

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIWDRYISSNQ 245
             +    E                    T++EL  H+  +      G + +W   + + +
Sbjct: 61  VSQNNASEDIQRITRPAS---ALKIIYATEDELANHESRLDFVMKKGGSCLWRMPLEAEE 117


>gi|161507964|ref|YP_001577928.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348953|gb|ABX27627.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 317

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 8/201 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
            D+ETTGL    DRI E+G V++ +    ++ +   +  P   K      KL+GIT+E +
Sbjct: 36  LDVETTGLSPFRDRITELGGVKVRNGQIVDQ-YTNLVKFPKNNKVPAFITKLNGITEEQI 94

Query: 71  KDKPSF-SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            ++         EF +F  +        N   +      +L +    P+  +  +D L +
Sbjct: 95  TNEGIPAEQAIKEFREFIGDDTIIGYNVNFDLN---FLYDLSQKYNLPVLNNDYVDVLRL 151

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           AR  +P   N L    +R GI      +H  L DS     VY       ++        +
Sbjct: 152 ARVYYPRQHNRLIDCMQRAGIA--QVEQHHGLADSLDTIKVYNDFNQHFTEDLLEQAIGK 209

Query: 190 DRFFKEEKKTVPNISLLKRDK 210
            +        V    L  R+ 
Sbjct: 210 IKNVDLTGDEVDYYQLGFRNP 230


>gi|315127113|ref|YP_004069116.1| hypothetical protein PSM_A2044 [Pseudoalteromonas sp. SM9913]
 gi|315015627|gb|ADT68965.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 718

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG     +RI EIG V++        T+   + P  R        L GI D  +
Sbjct: 556 VVDIETTGGLKGGNRITEIGIVKIKQGEIV-DTWTTLINPE-RPIPRFITSLTGINDAMV 613

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
            + P FS I +   +  +         N  +  
Sbjct: 614 SNAPIFSEIAAPLLNQLSGSIFVAHNVNFDYGF 646


>gi|313115651|ref|ZP_07801107.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622037|gb|EFQ05536.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 1417

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 68/195 (34%), Gaps = 6/195 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD ETTGLD   + + EIGAV + +       F  F+ P G+  +P+  +L GIT+E +
Sbjct: 399 VFDTETTGLDPGVEYMTEIGAVIVKNGEVV-EEFDTFVKP-GKPITPKITELTGITNEMV 456

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P        F       +   + HN             + +   L+P+ I       
Sbjct: 457 ADAPGEKEALEAFLK--FAGDRILVGHNVHAFDMRFLRAAAKRSGIKLEPTYIDTLTMAQ 514

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
                       ++ K   +       H A  DS  L  ++  M+    +      +  +
Sbjct: 515 AMYPGLHNYKQGTINKHLELP--AYEAHRACEDSAALGRIFGVMLNDLKEKQVAKVSEIN 572

Query: 191 RFFKEEKKTVPNISL 205
                 ++ +     
Sbjct: 573 TGLGGNREVLKKKYY 587


>gi|307564574|ref|ZP_07627114.1| exonuclease [Prevotella amnii CRIS 21A-A]
 gi|307346732|gb|EFN92029.1| exonuclease [Prevotella amnii CRIS 21A-A]
          Length = 287

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 72/198 (36%), Gaps = 6/198 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGLD  NDRII+I  +++    K  R   +F+ P G++   E + L GIT+E 
Sbjct: 10  IVFDLETTGLDLVNDRIIQISYIKVYPDGKEERE-NIFINP-GKQIPEEVIALTGITNED 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P+F     E    F   +      N           L+   +      +++D  SI
Sbjct: 68  VAKAPTFKEKGKELSLKFTGCDFAGFNSNRFDIPMLAEEFLRAGIEFDFSKCQLVDAQSI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          +    +           A          +  +       +   +T+E
Sbjct: 128 FHK----MERRNLAAAYEFYCGRKMEEDFKAHRADQDTEATWAVLQGEIEMYSSKNQTDE 183

Query: 190 DRFFKEEKKTVPNISLLK 207
            R  +     + + S + 
Sbjct: 184 KRILENSVDALADFSKMN 201


>gi|255324960|ref|ZP_05366068.1| conserved hypothetical protein [Corynebacterium
          tuberculostearicum SK141]
 gi|255298020|gb|EET77329.1| conserved hypothetical protein [Corynebacterium
          tuberculostearicum SK141]
          Length = 98

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
           +V D ETTG + + DRIIE+ AV    Y     ++   L P+
Sbjct: 31 FVVIDTETTGFNKRYDRIIELAAVRADAYFNPVDSWHTLLTPD 73


>gi|323358024|ref|YP_004224420.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
 gi|323274395|dbj|BAJ74540.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
          Length = 405

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTGL   K+DRI+E+  V +         ++  + P        A ++HGI+ 
Sbjct: 5   FAVIDLETTGLFPQKHDRIVEVAIVHVSPAGVVEGVWETLVNP---MRDMGAQRIHGISA 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                 P FS++               +AHNA FD  F+   ++       D +  + T+
Sbjct: 62  AAAARAPEFSALAPSIASLLRG--RVPVAHNASFDARFLAHSMEHAGLACPDLAYWMCTM 119

Query: 128 S 128
            
Sbjct: 120 Q 120


>gi|291527626|emb|CBK93212.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium rectale M104/1]
          Length = 260

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 7/177 (3%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N     V D+E TGL +KND+IIEIGA  +        T    + P  +       +L 
Sbjct: 20  DNIKNYTVIDLEMTGLSAKNDKIIEIGAARVRGGEIV-DTISTLVNPK-QHIPQRVQELT 77

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD  +++            DF  +     +  N  FD  F+        +     +  
Sbjct: 78  GITDSDVENAADMDVAVDNLLDFIGD--DIILGQNVTFDYSFLKQWAVNHKRTLSLNAYD 135

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              ++            L  LC+ + ++    + H AL D+     ++ K++    +
Sbjct: 136 TLKIARKCLPA-EQSKKLEDLCEYFDVS--RENAHRALDDAIETKQIFEKLLALMDE 189


>gi|88801444|ref|ZP_01116972.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P]
 gi|88782102|gb|EAR13279.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P]
          Length = 462

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 72/204 (35%), Gaps = 7/204 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V DIETTG   K  +I EI A+ + D  K    F   + P  +        L GIT
Sbjct: 1   MLYAVVDIETTGNGPKGQKITEISAL-IFDGKKIVDEFTSLVNPE-QNIPAFITSLTGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +++ P F  I  +  +    +N  ++AHN  FD   I AE + +  D          
Sbjct: 59  NAMVRNAPRFFEIAKKVAE--ITENTIFVAHNVNFDYNIIQAEFKSLGFDFKRKKLCTIR 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L+        S +         G  I    +H A  D+   +++  +++           
Sbjct: 117 LTRKIIPGLPSYSL---GNICTGENIPINGRHRAKGDAEATAELLRRLIERDENFTINSF 173

Query: 187 TNEDRFFKEEKKTVPNISLLKRDK 210
            N           +  I +    +
Sbjct: 174 LNPKSRQATLPPLIDKIVIDNLPE 197


>gi|325529244|gb|EGD06199.1| DNA polymerase III, epsilon subunit [Burkholderia sp. TJI49]
          Length = 205

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 8/170 (4%)

Query: 7   MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+ + V D ETTGL     DR  EI  + L D    +R +Q  +   GR+   + + L G
Sbjct: 1   MQTVAVLDFETTGLSPNLGDRATEIAVILLRDGQIVDR-YQSLMN-AGRRIPSDVVALTG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT++ +   P  + +  E   F  +     +AHNA FD  F     +    D        
Sbjct: 59  ITNDMIASAPPAAKVMKEAAAFVGK--HAVVAHNAGFDKRFWQ--AELGRLDVSAEHAFA 114

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            T+ +ARR +P +R+   S              H A++D+ +   ++ ++
Sbjct: 115 CTMLVARRIYPDARSHRLSSLAEMLQLPKSGRAHRAMVDAEMAGHLWCRL 164


>gi|144901019|emb|CAM77883.1| DNA polymerase III epsilon chain-like protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 619

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            + FD ETTGL   + DR+I++GAV +      +  +F+  + P G     +++  HGI+
Sbjct: 430 FVAFDCETTGLRPDQGDRLIQVGAVRIGQGRVLSGESFERLIDP-GIPIPAQSMAYHGIS 488

Query: 67  DEFLKDKPS 75
           ++ +K KP 
Sbjct: 489 NDMVKGKPP 497


>gi|291450661|ref|ZP_06590051.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
 gi|291353610|gb|EFE80512.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 345

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 8/163 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+  G  +L    +    +   + P      P  + +HG+T  
Sbjct: 40  YAVVDVETTGL-ARDDRIVSAGVYQLDALGRVEDHWYTLVNPER---DPGPVWIHGLTTG 95

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD P F  I  E      +     +AHNA FD   +  E  R  +      R+     
Sbjct: 96  VLKDAPLFKDISDELSARLAD--RVLVAHNAAFDWSMLAREYARAERVAPVRQRLCTIAL 153

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                 P   + L SL   +G+       H AL D+ +L++ +
Sbjct: 154 SKELGLPLPNHKLESLAAHFGVV--QERAHHALDDARVLAEAF 194


>gi|239978772|ref|ZP_04701296.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 324

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 8/163 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+  G  +L    +    +   + P      P  + +HG+T  
Sbjct: 19  YAVVDVETTGL-ARDDRIVSAGVYQLDALGRVEDHWYTLVNPER---DPGPVWIHGLTTG 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD P F  I  E      +     +AHNA FD   +  E  R  +      R+     
Sbjct: 75  VLKDAPLFKDISDELSARLAD--RVLVAHNAAFDWSMLAREYARAERVAPVRQRLCTIAL 132

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                 P   + L SL   +G+       H AL D+ +L++ +
Sbjct: 133 SKELGLPLPNHKLESLAAHFGVV--QERAHHALDDARVLAEAF 173


>gi|251796459|ref|YP_003011190.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           JDR-2]
 gi|247544085|gb|ACT01104.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           JDR-2]
          Length = 953

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 74/177 (41%), Gaps = 6/177 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  V D+ETTG    +D I+++G   L D  +   T+  F+ P   +      +L GI 
Sbjct: 1   MKFAVLDLETTGHSVSDD-ILQVGLAVLDDNLEIVETYSSFVRP-TIEIPAFITQLTGID 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P    +  +   +  +  A  +AHN  FD GF+N  L R    P    R+   
Sbjct: 59  ADMVADAPELDEVLMQLIPYLED--AVLVAHNVNFDAGFLNQALDRCGYHPFIGRRLDTI 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             +       +   L ++ + +GI       H A  D+   ++++ + +    Q+  
Sbjct: 117 ELLRILYPSITTYQLGAVTELFGIAH--DQHHRADSDAIATAELFAQSVQKLRQLPL 171


>gi|312869960|ref|ZP_07730099.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris
           PB013-T2-3]
 gi|311094545|gb|EFQ52850.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris
           PB013-T2-3]
          Length = 949

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG      DRII+IG V + D       F+  + P   K     ++L GI D  
Sbjct: 21  VVDLETTGTSVNHGDRIIQIGCVLVQDGQVI-NHFETKVNP-REKIPRAVVQLTGIQDRD 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
           ++  P F  +    +             N  F
Sbjct: 79  VRKAPLFEDVAGTIYSLLTGTTFVAHNVNFDF 110


>gi|260062630|ref|YP_003195710.1| DNA polymerase III subunit epsilon [Robiginitalea biformata
          HTCC2501]
 gi|88784197|gb|EAR15367.1| DNA polymerase III, epsilon subunit [Robiginitalea biformata
          HTCC2501]
          Length = 222

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +V D ETTG   ++DRI+ IGA+ +     +   + + F+       +   + 
Sbjct: 34 FVVLDTETTGFSPQHDRILSIGALRVSQGRIRVKESLERFVKQERFDRASVPIH 87


>gi|328957363|ref|YP_004374749.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Carnobacterium sp. 17-4]
 gi|328673687|gb|AEB29733.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Carnobacterium sp. 17-4]
          Length = 940

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 7/176 (3%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V DIETTG +    DR+I+ G V + D    +R F   + P       +   L G+++
Sbjct: 10  YAVVDIETTGGNVTSGDRMIQFGCVLIEDDKIVHR-FATTVNP-LTSIPKQIEHLTGLSN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +   P F  + +  ++   +     +AHN +FD  F++ ELQR     L    I    
Sbjct: 68  KSVALAPYFEDVAATIYNLLED--CIIVAHNIQFDYIFLSGELQRCGMPALKNKGIDTVE 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                    S   LN L  ++ I     + H A  D+ + +++++++     ++  
Sbjct: 126 LAQILLPTESSYRLNDLVSKFNIEH--TNPHQADSDAAVTAELFLELKNKLKELPL 179


>gi|291513942|emb|CBK63152.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Alistipes shahii WAL 8301]
          Length = 255

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 75/200 (37%), Gaps = 9/200 (4%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           ++ N  R I+F D+ETTG+D+  DRI+EI  V+++ D  +  +T    L P G     EA
Sbjct: 1   MKLNLKRPIIFFDLETTGVDTARDRIVEISMVKVMPDGEEITKT--RRLNP-GMHIPEEA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGITD+ ++D P+F+ +      F    +      N       +   L+        
Sbjct: 58  SAIHGITDDDVRDCPTFAQVARSLEQFIRGCDFGGFNSNRFDLPVLVEEFLRAGVDVDFK 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             + ID  +I  +              ++         H A  D+    +V    +    
Sbjct: 118 RRKFIDVQNIFHK----KEQRTLVAAYKFYCDKDLEEAHSAEADTKATYEVLKAQLDRYD 173

Query: 180 QINFGFKTNEDRFFKEEKKT 199
            +        +   + E   
Sbjct: 174 DLENDIDKLAEYSCRAESAD 193


>gi|262279766|ref|ZP_06057551.1| ribonuclease T [Acinetobacter calcoaceticus RUH2202]
 gi|262260117|gb|EEY78850.1| ribonuclease T [Acinetobacter calcoaceticus RUH2202]
          Length = 220

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 67/191 (35%), Gaps = 16/191 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54
           +V D+ET G +++ D ++EI  + ++            F   + P           +   
Sbjct: 24  VVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P       + ++            +E     +  +A  + HNA FD+GF+ A + R +
Sbjct: 84  IDPFNPMRMAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFVQAAIARTS 143

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +P      +             + +  C + GI    +  H AL D+   ++++  
Sbjct: 144 TKNQNPFHSFSVMDTVTLSAVMFGQTVLAKACIQAGIEFDGKEAHSALYDTQKTAELFCY 203

Query: 174 MMVGGSQINFG 184
           ++   S     
Sbjct: 204 ILNKLSPYLLD 214


>gi|223984468|ref|ZP_03634601.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
           12042]
 gi|223963539|gb|EEF67918.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
           12042]
          Length = 1451

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 4/169 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V+D+ETTGL    D IIE GAV +++  +   T Q+F+ P     +    +   IT+E
Sbjct: 399 YVVYDLETTGLSCSFDHIIEFGAV-VIERGEIKETKQLFVKPP-VPINAFISEKTNITNE 456

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     F+ +  E  DF  +     +AHNA FD  F+N EL+RI   PL    +     
Sbjct: 457 DVAQAKPFAEVAQELVDFIGD--KVLVAHNATFDYNFLNEELKRIGMAPLTNPVVDTLDL 514

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                       L ++ + Y IT      H A  D+ +L+ V++ M+  
Sbjct: 515 ARALHSDRRSYRLGNIARHYRITYDEEVAHRADYDADVLASVFMLMIKE 563


>gi|160944143|ref|ZP_02091373.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444819|gb|EDP21823.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1417

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 70/195 (35%), Gaps = 6/195 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD ETTGLD   + + EIGAV + +       F  F+ P G+  +P+  +L GIT+E +
Sbjct: 399 VFDTETTGLDPGVEYLTEIGAVIIRNGEVV-EEFDTFVKP-GKPITPKITELTGITNEMV 456

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D PS       F       +   + HN             + +   L+P+ I       
Sbjct: 457 ADAPSEKEALEAFLA--FAGDRILVGHNVHAFDMRFLRAAAKRSGIKLEPTYIDTLTMAQ 514

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
                       ++ K   +       H A  DS  L  ++  M+   ++      +  +
Sbjct: 515 TMYPGLHNYKQGTINKHLELP--AYEAHRACEDSAALGRIFCVMLNDLAEKEVTKVSEIN 572

Query: 191 RFFKEEKKTVPNISL 205
                 ++ +     
Sbjct: 573 TGLGGNREVLKKKYY 587


>gi|260102980|ref|ZP_05753217.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
 gi|260083211|gb|EEW67331.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
 gi|328464560|gb|EGF35931.1| DNA polymerase III [Lactobacillus helveticus MTCC 5463]
          Length = 317

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 8/201 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
            D+ETTGL    DRI E+G V++ +    ++ +   +  P   K      KL+GIT+E L
Sbjct: 36  LDVETTGLSPFRDRITELGGVKVRNGQIVDQ-YTNLVKFPKNNKVPAFITKLNGITEEQL 94

Query: 71  KDKPSF-SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            ++         EF +F  +        N   +      +L +    P+  +  +D L +
Sbjct: 95  TNEGIPAEQAIKEFREFIGDDTIIGYNVNFDLN---FLYDLSQKYNLPVLNNDYVDVLRL 151

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           AR  +P   N L    +R GI      +H  L DS     VY       ++        +
Sbjct: 152 ARVYYPRQHNRLIDCMQRAGIA--QVEQHHGLADSLDTIKVYNDFNQHFTEDLLEQAIGK 209

Query: 190 DRFFKEEKKTVPNISLLKRDK 210
            +        V    L  R+ 
Sbjct: 210 IKNVDLTGDEVDYYQLGFRNP 230


>gi|298209279|ref|YP_003717458.1| putative DNA polymerase III epsilon chain [Croceibacter atlanticus
           HTCC2559]
 gi|83849206|gb|EAP87075.1| putative DNA polymerase III epsilon chain [Croceibacter atlanticus
           HTCC2559]
          Length = 258

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 8/172 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG++   D+I+EI  +++  + +K ++T+   + P  R    E   +HGITDE 
Sbjct: 11  FFDLETTGVNVAKDKIVEISILKVFPNGNKESKTW--LVNPE-RPIPAETTAVHGITDEK 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P+F  + S  ++     +      N           L+      +  S  +D  +I
Sbjct: 68  VANEPTFKELSSSIYEMIKGCDLGGFNSNRFDIPLLAEELLRADIDFDMKNSSAVDVQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
             +              ++         H A  D+    +V    +     +
Sbjct: 128 FHK----MEQRTLVAAYKFYCDKDLTDAHSAAADTEATYEVLKAQLDKYPDL 175


>gi|304384907|ref|ZP_07367253.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
 gi|304329101|gb|EFL96321.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 927

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 7/180 (3%)

Query: 5   NKMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            K R  V D+ETTG    +  RII+IG   +     T  T+Q  + P          +L 
Sbjct: 2   KKTRYAVVDLETTGTGSVEESRIIQIGCAFIEGDQIT-ETYQTKINPQ-MTIPKRISRLT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD+ ++  P F+ +  + +         ++AHN  FD  F+N EL R     LD   I
Sbjct: 60  GITDQQVRQAPKFADVADKIYQKLAG--TVFVAHNVNFDFPFLNRELVRSGYPELDLKAI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                       +    L  L     I       H A  D+   + +++K+    S++  
Sbjct: 118 DTVTLSQVLFSRTRGYRLRDLTNYLHIEH--DDPHSADSDAVATAHLFLKIKAALSELPI 175


>gi|270290279|ref|ZP_06196504.1| DnaQ family exonuclease/DinG family helicase [Pediococcus
           acidilactici 7_4]
 gi|270281060|gb|EFA26893.1| DnaQ family exonuclease/DinG family helicase [Pediococcus
           acidilactici 7_4]
          Length = 927

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 7/180 (3%)

Query: 5   NKMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            K R  V D+ETTG    +  RII+IG   +     T  T+Q  + P          +L 
Sbjct: 2   KKTRYAVVDLETTGTGSVEESRIIQIGCAFIEGDQIT-ETYQTKINPQ-MTIPKRISRLT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD+ ++  P F+ +  + +         ++AHN  FD  F+N EL R     LD   I
Sbjct: 60  GITDQQVRQAPKFADVADKIYQKLAG--TVFVAHNVNFDFPFLNRELVRSGYPELDLKAI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                       +    L  L     I       H A  D+   + +++K+    S++  
Sbjct: 118 DTVTLSQVLFSRTRGYRLRDLTNYLHIEH--DDPHSADSDAVATAHLFLKIKAALSELPI 175


>gi|291287661|ref|YP_003504477.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884821|gb|ADD68521.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
          Length = 228

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 5/170 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETTGLD  + RII + AV++ ++      +  F+ P   +   E+++ H ITDE +
Sbjct: 47  VIDTETTGLDLNDARIINVAAVKVQNFKII-DFYNSFINPET-EIPKESIQWHNITDEMV 104

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP+   +  +F +F ++  +  + H+  FD+  IN E+       ++ + +   L  +
Sbjct: 105 ADKPTAGEVLPDFLNFVDD--SIIVGHHVTFDIKMINKEMMDSFSCQINNNWLDTMLIYS 162

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                                ++   +H AL D+   ++V+ KM++  S+
Sbjct: 163 HAIIKKDERYSLDYLLDL-YNVTCNGRHTALGDALATAEVFTKMIMQASR 211


>gi|188995649|ref|YP_001929901.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis
           ATCC 33277]
 gi|188595329|dbj|BAG34304.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis
           ATCC 33277]
          Length = 259

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 8/171 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I FD+ETTG+D   DRI+EI  ++++ D S+  +T    + P  R   PE+  +HGITDE
Sbjct: 10  IFFDLETTGVDLVRDRIVEISILKVMPDGSEECKT--RRINPE-RSIPPESTAIHGITDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P F S+      +    +              +   L+      L   ++ID  +
Sbjct: 67  DVKDCPPFRSVAKSLAQWIEGCDLAGFNSTRFDVPMLVEEFLRAGVDIDLRHRKLIDVQT 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           I  +  P           R+    +  + H A  D+    DV+   +    
Sbjct: 127 IFHKMEP----RTLEAATRFYCNRTLENAHSAEADTRATYDVFKAQLDRYE 173


>gi|313891131|ref|ZP_07824750.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120494|gb|EFR43614.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 1466

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 76/172 (44%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 428 YVVFDVETTGLSAINNDLIQIAASKMYKGNII-EQFDEFINP-GHPLSTFTTELTGITDN 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L        +   F DF   QN   +AHNA FDVGF+NA  +R     ++   I     
Sbjct: 486 HLIGAKPILKVLEAFQDFC--QNTILVAHNASFDVGFMNANYERHQLPLINQPVIDTLEF 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 544 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKEARE 593


>gi|225012673|ref|ZP_03703108.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium
           MS024-2A]
 gi|225003206|gb|EEG41181.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium
           MS024-2A]
          Length = 257

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 75/201 (37%), Gaps = 8/201 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG D   DRI+EI  ++L  D  +  + ++    P  +    EA  +HGITDE 
Sbjct: 11  FFDLETTGTDISKDRIVEIAVLKLHPDGLQEKKEWRT--NPE-QPIPAEASAVHGITDEM 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +P+F  + +E + F    +      +       +   L+         ++ +D  +I
Sbjct: 68  VASEPTFKELSNEIYSFIKGCDLAGYNSDRFDIPLLVEELLRAEVDFDFKNNKTVDVQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          +   R+         H A  D+    DV I  +    ++        
Sbjct: 128 FHK----MEQRTLTAALRFYCNEELTDAHSAHADTKATHDVLIAQLDRYQELEPNIAFLN 183

Query: 190 DRFFKEEKKTVPNISLLKRDK 210
           +   + +        +  +D+
Sbjct: 184 EFSSRRKTVDFAGFVVYNKDE 204


>gi|291287762|ref|YP_003504578.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884922|gb|ADD68622.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
          Length = 205

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 7/174 (4%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           VFD ETTG+   K  R++EIGAV++      +   +F   + P        A  +HGI+ 
Sbjct: 13  VFDTETTGMSPDKGARLLEIGAVKVKPGLVLDLQDSFCTLINPK-APIPYNAYSVHGIST 71

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + DKP    +   F+     +N    AHNA+FD  F++               +    
Sbjct: 72  AMVADKPEIKDVLPGFFS--FTENTIIAAHNARFDCSFVSHHSAECCIVNPMTKIVDTVK 129

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                        L +L   + + I     +      +  +   + + +   ++
Sbjct: 130 LAKSAHSGLKSYSLGNLIHYFSMDIPLPDTYR-HRALYDAAHTALLLTICLKKL 182


>gi|31747869|gb|AAN10194.1| DNA polymerase III epsilon subunit [Candidatus Fritschea
          bemisiae]
          Length = 249

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD E+TGLD + DRIIEI A++    +    + +  + P       E  ++H ITDE
Sbjct: 9  FVCFDCESTGLDPEKDRIIEIAAIKFSFNAII-DSIEDLINPET-LIPQETTRIHHITDE 66

Query: 69 FLKDKPSFSSIFSEFWDFF 87
           ++  P  + +   + DF 
Sbjct: 67 MVQKSPKINEVIQSYLDFI 85


>gi|56460902|ref|YP_156183.1| ribonuclease T [Idiomarina loihiensis L2TR]
 gi|56179912|gb|AAV82634.1| RNase T, degrades tRNA [Idiomarina loihiensis L2TR]
          Length = 215

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL--LDYSKTN--RTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L   D        +    + P  G      A+  +G
Sbjct: 19  VVVDVETAGFNAKTDALLEIAAVLLDFDDDGILKPVDSVHYHVKPFEGANIEQAAIDFNG 78

Query: 65  ITDE--------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +       Q +  + HN+ FD GF+ A  +R N  
Sbjct: 79  IDPHCPLRGAVEEGEALRELFKPIRKAQKAAGCQRSVLVGHNSNFDHGFMMAAAERANLK 138

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + +       +  L   C+  GI    +  H AL D+   +++Y  M+ 
Sbjct: 139 RNPFHPFVSFDTTSLAAMTLGQTVLIKACQAAGIEFDSKQAHSALYDTERTAELYCWMIN 198

Query: 177 GGSQIN 182
              ++ 
Sbjct: 199 RWKELG 204


>gi|315648491|ref|ZP_07901590.1| hypothetical protein PVOR_24689 [Paenibacillus vortex V453]
 gi|315276185|gb|EFU39531.1| hypothetical protein PVOR_24689 [Paenibacillus vortex V453]
          Length = 246

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTG + +  D I+  GAV ++        +F + +  +G    P   +L GIT 
Sbjct: 62  VVFDLETTGFNHQHGDEILSFGAVRVIGEQVIEQESFHMIVN-SGSPVPPFITELTGITQ 120

Query: 68  EFLKDKPSFSSIFSEFWDFF 87
             +   P       +F  F 
Sbjct: 121 HMVDAAPPLMEGLHDFMAFV 140


>gi|304382373|ref|ZP_07364875.1| DNA polymerase III epsilon chain [Prevotella marshii DSM 16973]
 gi|304336490|gb|EFM02724.1| DNA polymerase III epsilon chain [Prevotella marshii DSM 16973]
          Length = 284

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 77/205 (37%), Gaps = 7/205 (3%)

Query: 2   IRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  R  IVFD+ETTGLD  NDRII++  +++L      R   +F+ P  R    E +
Sbjct: 1   MKLNLTRPLIVFDLETTGLDLVNDRIIQLSYIKVLPDGTELRK-NIFINPE-RSIPKEVV 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GITD+ +K+ P+F  +  +  + F   +      N           L+         
Sbjct: 59  ELTGITDDDVKEAPTFKEMAPDLNNEFRGCDFAGYNSNHFDIPMLAEEFLRAGIDFDFSK 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY---IKMMVG 177
            R+ID  +I  +                       + H A  D+     V    ++M   
Sbjct: 119 CRLIDAQTIFHKMERRHLAAAYKFY-CGRKMEEDFTAHRADEDTEATYRVLQGELEMYQP 177

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPN 202
           G Q     +   D     E     N
Sbjct: 178 GKQEEAERQLENDMDVLAEFSKNNN 202


>gi|262372115|ref|ZP_06065394.1| ribonuclease T [Acinetobacter junii SH205]
 gi|262312140|gb|EEY93225.1| ribonuclease T [Acinetobacter junii SH205]
          Length = 221

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 66/196 (33%), Gaps = 16/196 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54
           +V D+ET G +S+ D ++EI  + ++            F   + P           +   
Sbjct: 25  VVVDVETAGFNSQTDALLEIACIPIVYDQQGQFIPGPAFHAHINPFEGANLDRRSLDFIG 84

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P       + ++            +E     +  +A  + HNA FD+GF+ A + R  
Sbjct: 85  IDPFNPMRVAMAEDERGALRRIFKSLNEVRKAQHCTHAVLVGHNAHFDLGFLQAAIARSG 144

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +P                    + +  C + GI    +  H AL D+   ++++  
Sbjct: 145 TKNQNPFHSFSVFDTVTLSAVMFGQTVLARACIQAGIEFDGKEAHSALYDTQKTAELFCY 204

Query: 174 MMVGGSQINFGFKTNE 189
           ++   S         E
Sbjct: 205 ILNKLSPHLLDSLVTE 220


>gi|311694144|gb|ADP97017.1| DNA polymerase III, epsilon subunit [marine bacterium HP15]
          Length = 235

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 4/174 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D+ETTGL+   D +I IGAV +          F + L         E + +HGI 
Sbjct: 40  RLIVLDLETTGLNPSKDEVIAIGAVAIRGGIIHLGDQFDLILRRPELDI-RETVLIHGIG 98

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E L              ++ N                    + Q     P     + D 
Sbjct: 99  PEALTQGHEIEDALLYLLEWMNGDPILAYHSAFDQKFLEKTLKAQLGYTQPHTWMDVADL 158

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +        +    L++    +G+      +H A  D+   +++ +  +     
Sbjct: 159 MPAFFPNTKTGGKGLDNWADYFGLE--VSERHHAASDALATAELTLVALNKARS 210


>gi|86130881|ref|ZP_01049480.1| exonuclease [Dokdonia donghaensis MED134]
 gi|85818292|gb|EAQ39452.1| exonuclease [Dokdonia donghaensis MED134]
          Length = 229

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALK 61
          R +VFD ETTGLD K DRI+ +G V ++ +      T ++FL  +        + 
Sbjct: 45 RFVVFDTETTGLDYKKDRILSLGGVAVVGNQVIVADTLELFLKQDFYNPDSAQIH 99


>gi|313206047|ref|YP_004045224.1| exonuclease rnase t and DNA polymerase iii [Riemerella
           anatipestifer DSM 15868]
 gi|312445363|gb|ADQ81718.1| Exonuclease RNase T and DNA polymerase III [Riemerella
           anatipestifer DSM 15868]
          Length = 254

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 6/186 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           +FD+ETTG +   DRI+EI  +  ++   +  T    + P        A  +HGI+DE +
Sbjct: 11  IFDLETTGTNISKDRIVEI-CILKVNTDASRETKTWLVNPEMH-IPAFATAVHGISDEDV 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD P+   I  +  +  +  +      N           L+      L   +++D   I 
Sbjct: 69  KDAPTLKEIAPKIMEMISGADLGGFNSNRFDVPLLAEEMLRAGVDFDLSKMKLVDAQVIF 128

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
            +  P       S   ++    +    H A  D+    +V    +    ++        +
Sbjct: 129 HKMEP----RNLSAAYQFYCNKTLEDAHSAEADTLATFEVLDAQVGKYEELPKDINGLSE 184

Query: 191 RFFKEE 196
             + ++
Sbjct: 185 FSYHQK 190


>gi|322489448|emb|CBZ24706.1| mitochondrial DNA polymerase I protein B,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 1429

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 6/156 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FDIETTGL+   D I+E+    + D  + N TF   + P  R  +P  + +H IT+
Sbjct: 763 RIVFFDIETTGLNPSTDAIVEVA---MFDPIE-NTTFHTLVNPQ-RSITPRTVGIHHITN 817

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++D P+   +      +    +      +    +   N                    
Sbjct: 818 AMVRDAPTVDVVAKSIGQYLRL-DKASYNPHEILVLVGHNVFSVDEPMLRRALECHAPEC 876

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +       S   LN+        +  R  +  L+D
Sbjct: 877 QLDGILFCDSLALLNAHRSDLRWRMRIRRANQPLMD 912


>gi|294790489|ref|ZP_06755647.1| DNA polymerase III domain protein [Scardovia inopinata F0304]
 gi|294458386|gb|EFG26739.1| DNA polymerase III domain protein [Scardovia inopinata F0304]
          Length = 241

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 7/197 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+FD ETTG +  + RIIEIG + L         +Q  + P G   +  +  L GI D  
Sbjct: 44  IIFDTETTG-NFSDQRIIEIGGLFLRKGVPIGE-WQQLINP-GVNITHFSQHLSGINDAM 100

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P  S++   F +           +N  FD+  +N E  R+    +  S +ID + I
Sbjct: 101 IANEPPASTVIPWFINSIQNLTIV--GYNVNFDINALNEEANRLGMSGISVSNVIDVIDI 158

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           AR+  P+S +          + +S   KH AL D+ L    + KM    +         +
Sbjct: 159 ARQSLPNSPSYSLEQVAIL-LNVSDTEKHRALDDAILTWKCWQKM-ESMNNKQIILSQEQ 216

Query: 190 DRFFKEEKKTVPNISLL 206
                +    + N    
Sbjct: 217 VTTVSQRNSKIRNDKNK 233


>gi|291531551|emb|CBK97136.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium siraeum 70/3]
          Length = 361

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 81/239 (33%), Gaps = 19/239 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTGL   ND IIEIGA+ + D       F   +                      
Sbjct: 11  IVDIETTGLSPDNDNIIEIGALRVRDNKIVAD-FSQLIK---ASKPLSKTISQITGITDD 66

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
               +     +         N   + HN  FD  FI+   + +       +   DTL+  
Sbjct: 67  MLADAKELDDTLSDFLRFVDNDTVVGHNIAFDANFIS--KKCVAYGLDFKNDTYDTLAAC 124

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           ++++P   + L  +  + GI  S    H AL D +    +    +   S +    K  + 
Sbjct: 125 KQEYPDVSHKLEDMIIQLGIKDSGI-HHRALADCYHTHSLMTA-LKNHSALVLEIKPPKQ 182

Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-----------LGKNAIWD 238
           R      K +  +  +         +T+EEL   ++ +             +  NAIW 
Sbjct: 183 RVLNPITKGLQTLHGILIGITCDDILTQEELLRLEEWMNNNEQLAGNYPYDIINNAIWK 241


>gi|210634765|ref|ZP_03298293.1| hypothetical protein COLSTE_02220 [Collinsella stercoris DSM 13279]
 gi|210158705|gb|EEA89676.1| hypothetical protein COLSTE_02220 [Collinsella stercoris DSM 13279]
          Length = 975

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 65/176 (36%), Gaps = 10/176 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGL  + + +IEI A  L       R F  F+ P+      E  +L  IT+  
Sbjct: 48  VVLDTETTGLSHRENELIEIAAARLRGREVVER-FDTFIKPH-ALIPAEITELTSITNAD 105

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   PS     +   DF     A  IAHNA FD GFI A         +    +  +   
Sbjct: 106 VAHAPSAEEAVARLADFVGG--APVIAHNAAFDRGFIEAVSGGAEVTDIWIDSLALSRIA 163

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             R        +  L    G++      H A  D   L  V+  ++     +  G 
Sbjct: 164 LPRLSSHKLASMAELFGCSGVS------HRANADVEALCGVWRILLCALDDLPSGL 213


>gi|167854538|ref|ZP_02477319.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Haemophilus parasuis 29755]
 gi|219872178|ref|YP_002476553.1| ribonuclease T [Haemophilus parasuis SH0165]
 gi|167854293|gb|EDS25526.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Haemophilus parasuis 29755]
 gi|219692382|gb|ACL33605.1| ribonuclease T [Haemophilus parasuis SH0165]
          Length = 216

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 72/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEA----- 59
           +V D+ET GL+++ D ++EI A+  ++ D      +  F   + P      +PEA     
Sbjct: 22  VVVDVETGGLNAQTDALLEIAAITLKMDDDGYLHLDEKFHRHVKPFENANINPEALKVNG 81

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116
           + +       + +  + + +F        +        +AHNA FD  F+ A ++RIN  
Sbjct: 82  IDVDNAERGAVPEDIAITEMFKMVRKAVKDNGCQRAVIVAHNATFDQAFLQAAVKRINTK 141

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    +  H AL D+   ++++  M+ 
Sbjct: 142 RDPFHPFAMFDTATLAGFMYGQTVLVKACQMAQIPFDGKQAHSALYDTERTAELFCAMVN 201

Query: 177 GGSQIN 182
               + 
Sbjct: 202 KLKDLG 207


>gi|72161118|ref|YP_288775.1| exonuclease [Thermobifida fusca YX]
 gi|71914850|gb|AAZ54752.1| exonuclease [Thermobifida fusca YX]
          Length = 516

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 57/174 (32%), Gaps = 8/174 (4%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTGL+ K   R+ EI  V +         +   + P    +S      HGITD
Sbjct: 21  YAVLDLETTGLNPKRGARVCEIAVVRMRGDGTVLDEYSTLVNPG---SSIRNSAFHGITD 77

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            ++K  PSF  +  +   + +           K D        +                
Sbjct: 78  TWVKTAPSFDQVAGDLLAYLDGAIVVG----HKLDFEEKFLAAEFARLGVPLTGIPGLCT 133

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +A R          +            ++H AL D+  L+ V  +++    Q 
Sbjct: 134 LVAARYQLDRYGYRLAHLHHLLTGRWPTAEHSALGDARSLAAVLTELINAAPQP 187


>gi|315022360|gb|EFT35388.1| DNA Pol III Epsilon Chain [Riemerella anatipestifer RA-YM]
 gi|325336512|gb|ADZ12786.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases
           [Riemerella anatipestifer RA-GD]
          Length = 254

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 6/186 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           +FD+ETTG +   DRI+EI  +  ++   +  T    + P        A  +HGI+DE +
Sbjct: 11  IFDLETTGTNISKDRIVEI-CILKVNPDASRETKTWLVNPEMH-IPAFATAVHGISDEDV 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD P+   I  +  +  +  +      N           L+      L   +++D   I 
Sbjct: 69  KDAPTLKEIAPKIMEMISGADLGGFNSNRFDVPLLAEEMLRAGVDFDLSKMKLVDAQVIF 128

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
            +  P       S   ++    +    H A  D+    +V    +    ++        +
Sbjct: 129 HKMEP----RNLSAAYQFYCNKTLEDAHSAEADTLATFEVLDAQVGKYEELPKDINGLSE 184

Query: 191 RFFKEE 196
             + ++
Sbjct: 185 FSYHQK 190


>gi|288554371|ref|YP_003426306.1| hypothetical protein BpOF4_06780 [Bacillus pseudofirmus OF4]
 gi|288545531|gb|ADC49414.1| hypothetical protein BpOF4_06780 [Bacillus pseudofirmus OF4]
          Length = 220

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 3/170 (1%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +FD ETTG      DR+IEI  V +       +TFQ F+ P+ R+   +   L GI+ E 
Sbjct: 30  IFDTETTGFAINGADRMIEIAGVRVAGLEVQEQTFQTFVNPD-REIPEKITSLTGISGEK 88

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD PS       F+ F  + +++    +       +  +    +K   D   ++DTL +
Sbjct: 89  VKDAPSSLEALERFFQFNEDIDSKLWVGHYVSFDMMVVKKELLRHKYTYDTPLVVDTLDL 148

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               +PS       +            +H AL D+   + ++ ++M    
Sbjct: 149 IGYLNPSRDMRDLEVYALQ-FGTLVYERHQALGDAMTTAHLFCELMRHLE 197


>gi|269796817|ref|YP_003316272.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
 gi|269099002|gb|ACZ23438.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
          Length = 611

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 74/202 (36%), Gaps = 7/202 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+GL   + R++++   ++       R++   L P      P  + +HG+T E
Sbjct: 22  YAVVDVETSGLSPTHHRVLQVAVTQVEPDGALGRSWSSLLDPG---VDPGPVHVHGLTRE 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P +  +     +   +     +AHNA+FD GF+ AE  R         R+     
Sbjct: 79  RLAGAPQYQDVAGTLDELVRD--RVLVAHNARFDWGFLAAESDRARAPLSVDRRLCTLAL 136

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             R   P S   L ++   +G+       H A  D  +L +V    +    ++       
Sbjct: 137 SRRLDLPVSDLRLATVAAHWGVQQRRA--HDAEDDVRVLVEVLRHSLAAADRLGMTLPVA 194

Query: 189 EDRFFKEEKKTVPNISLLKRDK 210
                +   +    +      +
Sbjct: 195 ACGPGEPSARDGGPVRPSPSPR 216


>gi|77405656|ref|ZP_00782744.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae H36B]
 gi|77175729|gb|EAO78510.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae H36B]
          Length = 1468

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 66/172 (38%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P    +           + 
Sbjct: 430 YVVFDVETTGLSAANNDLIQIAASKMFKGNII-EQFDEFIDPGHPLSDFTTELTGITDNH 488

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               KP    +          Q    +AHNA FDVGF+NA  +R N   +    I     
Sbjct: 489 VRGSKPILQVLQEFQN---FCQGTVLVAHNATFDVGFMNANYERHNLPLITQPVIDTLEF 545

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ + + H   H A  D+     +    +    +
Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH--HHMANYDAEATGRLLFIFLKEARE 595


>gi|76787214|ref|YP_330464.1| DNA polymerase III PolC [Streptococcus agalactiae A909]
 gi|76562271|gb|ABA44855.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae A909]
          Length = 1468

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 66/172 (38%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P    +           + 
Sbjct: 430 YVVFDVETTGLSAANNDLIQIAASKMFKGNII-EQFDEFIDPGHPLSDFTTELTGITDNH 488

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               KP    +          Q    +AHNA FDVGF+NA  +R N   +    I     
Sbjct: 489 VRGSKPILQVLQEFQN---FCQGTVLVAHNATFDVGFMNANYERHNLPLITQPVIDTLEF 545

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ + + H   H A  D+     +    +    +
Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH--HHMANYDAEATGRLLFIFLKEARE 595


>gi|119026003|ref|YP_909848.1| putative DNA polymerase III epsilon subunit [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765587|dbj|BAF39766.1| putative DNA polymerase III epsilon subunit [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 207

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 66/174 (37%), Gaps = 9/174 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTGL   K DR IEIG V +          +  +       S  A  +H IT 
Sbjct: 6   YAVVDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLI---HVDRSVGASWVHHITA 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L   P F  I  E  D        ++AHN  FD  F+ AE        +   +     
Sbjct: 63  RELLHAPDFEGIAHELRDLLAG--RVFVAHNVSFDSRFLLAEYS-RMGASIPVDQSTMLC 119

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++   +    R  L   C+ +GI   +   H AL D+H  + +  +++    + 
Sbjct: 120 TMKLSRSLIGRGKLADCCEYFGIA--NEDAHSALSDAHATAILLGRLLEADPKW 171


>gi|295100646|emb|CBK98191.1| DNA polymerase III catalytic subunit, PolC type [Faecalibacterium
           prausnitzii L2-6]
          Length = 1417

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 10/221 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD ETTGLD   + + EIGAV + +       F  F+ P G+  + +  +L GIT+E +
Sbjct: 399 VFDTETTGLDPGVEYLTEIGAVIVRNGEVV-EEFDTFVKP-GKPITSKITELTGITNEMV 456

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D PS +     F DF +      + HNA            + +    +P+ I       
Sbjct: 457 ADAPSEAEALKAFLDFVDG--RILVGHNAHSFDIRFLRAAAKRSGIEFEPTYIDTLTMAQ 514

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF----GFK 186
                       ++ K   +       H A  DS  L  ++  M+    +       G  
Sbjct: 515 AMYPGLHNYKQGTINKHLELP--AYEAHRACEDSAALGRIFCVMLKDLEEKQVTAVSGIN 572

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
           T      +  KK   ++ +L R +     + K   + H   
Sbjct: 573 TGLGGNREVLKKKYYHLIILVRSQMGLKNLYKIVSEAHVNY 613


>gi|77409408|ref|ZP_00786106.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae COH1]
 gi|77171990|gb|EAO75161.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae COH1]
          Length = 1468

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 66/172 (38%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P    +           + 
Sbjct: 430 YVVFDVETTGLSAANNDLIQIAASKMFKGNII-EQFDEFIDPGHPLSDFTTELTGITDNH 488

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               KP    +          Q    +AHNA FDVGF+NA  +R N   +    I     
Sbjct: 489 VRGSKPILQVLQEFQN---FCQGTVLVAHNATFDVGFMNANYERHNLPLITQPVIDTLEF 545

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ + + H   H A  D+     +    +    +
Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH--HHMANYDAEATGRLLFIFLKEARE 595


>gi|320449814|ref|YP_004201910.1| DNA polymerase III subunit epsilon [Thermus scotoductus SA-01]
 gi|320149983|gb|ADW21361.1| DNA polymerase III, subunit epsilon [Thermus scotoductus SA-01]
          Length = 637

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTGLD + D II +GAV +L      +  F+  + P GR     + ++HG+T E 
Sbjct: 455 AFDLETTGLDPEKDAIIALGAVHILGKTVLRHEVFEALVNP-GRPIPKASTEVHGLTWEM 513

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           LK+KP    +   F      ++   +AHN  FD+ F
Sbjct: 514 LKEKPKLEEVLPGF--RLFLEDTVLLAHNGAFDMAF 547


>gi|305666543|ref|YP_003862830.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170]
 gi|88708810|gb|EAR01045.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170]
          Length = 222

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLC 49
          R IVFD ETTGLD  NDRI+ IGA+ +         + +++L 
Sbjct: 33 RFIVFDTETTGLDIVNDRILSIGAISVFSGKLDIGDSLEIYLK 75


>gi|205373870|ref|ZP_03226672.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus coahuilensis m4-4]
          Length = 194

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 5/154 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D+ETTG   K  DRII++ A  +         F  FL PN +       +L GIT
Sbjct: 5   RYVVVDLETTGNSPKRGDRIIQLSACLIEHGEIV-EQFTSFLNPN-KTIPIFIEELTGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              + D P+F  I  +     N+  + ++AHN  FD+ F+  EL            +   
Sbjct: 63  QPMVDDAPNFEQIAPKLISMLND--SVFVAHNVTFDLSFLQWELHAAGYKTFQGPILDTV 120

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
                    S+   L  L +++ +      +  +
Sbjct: 121 ELAKICFPTSNSYKLGDLSEKFNLLHERPHQADS 154


>gi|293189820|ref|ZP_06608534.1| putative DNA polymerase III, epsilon subunit [Actinomyces
           odontolyticus F0309]
 gi|292821235|gb|EFF80180.1| putative DNA polymerase III, epsilon subunit [Actinomyces
           odontolyticus F0309]
          Length = 540

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 6/167 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGL +    I EIGAV + D +  +  F   + P  R   P    L GIT  
Sbjct: 19  WVVVDLETTGLGA-GAEITEIGAVRIRDGAVVDE-FSSLVKP-SRPIPPFITSLTGITPA 75

Query: 69  FLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            + D    +S+   F ++       +   +AHNA FDVGF+    +   +       +  
Sbjct: 76  MVADADPIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPRVRVVDT 135

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                         +            +   +H AL D+   +++ +
Sbjct: 136 LALARLALPRPLVRNHKLGTVASYFGTATVPEHRALGDARATAEILL 182


>gi|21684660|gb|AAL87524.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps]
          Length = 201

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 1/164 (0%)

Query: 19  LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSS 78
           L  +  R+ E+G VE+     T   F  ++ P  ++ +  A  +HG+ DEFL  +P+F +
Sbjct: 1   LSPRYHRLAEVGCVEIAGGRITGNYFHSYINP-CQRMTRGAQAVHGLKDEFLATQPTFGA 59

Query: 79  IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138
           I      F               +                  + +IDT+    ++    R
Sbjct: 60  IAQRLLYFLCGAVLVGHNLTFDLNFLDAGLVSAGFMPAARYCAGVIDTMRHLAQRGSRRR 119

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
             L+ LC R G+    R++HGAL D+ LL++ ++        + 
Sbjct: 120 FSLDDLCDRLGVRRGERARHGALEDAVLLAEAFVAARRTHPSLG 163


>gi|323342398|ref|ZP_08082630.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463510|gb|EFY08704.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 200

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 10/182 (5%)

Query: 4   KNKMRKI----VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           +N ++ +    V D+ETTG  +K + I E+ A++  +Y +    F   + P+        
Sbjct: 6   ENLLKFVPNFTVIDLETTGRSNKFEDITELSAIKYRNYKQV-DAFSTLVKPDNSILP-FV 63

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           ++L GIT+E + D P    +  +F DF        + HN  FD G +           + 
Sbjct: 64  VELTGITEEMVSDAPKIDQVIKQFVDFIGT--DVILGHNVMFDYGLVYDAYLATVGLRMH 121

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +            S  + L +LC  +   +     H    D    ++VYIKM     
Sbjct: 122 NDYVDTLRVSRLLNKDSKNHKLETLCAYF--DVERLVGHRGSEDCLQTAEVYIKMKDKYK 179

Query: 180 QI 181
           ++
Sbjct: 180 RL 181


>gi|90409038|ref|ZP_01217165.1| ribonuclease T [Psychromonas sp. CNPT3]
 gi|90309845|gb|EAS38003.1| ribonuclease T [Psychromonas sp. CNPT3]
          Length = 204

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELL--DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ DIET+GL+S+ D I+EI A+   +    Y  + +T    + P  G    P+AL+  G
Sbjct: 15  VIIDIETSGLNSQTDAILEIAAIFPAMDEQGYLYSAQTIHFNVQPFEGANMDPKALEFTG 74

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +       +  +     +   +  +AHNA FD GFIN   +R N  
Sbjct: 75  IDPFNPLRGAIDEKEVLTEIFKLVRKHQKINDCNRSILVAHNAAFDQGFINKASERCNFK 134

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +     +   + +       +  L   C++  I  ++   H AL D+ + +D++  M+ 
Sbjct: 135 RIPFHPFVCFDTASMAGLMLGQTVLAKACEQANIDYNNEEAHSALYDTQVTADLFFYMVN 194

Query: 177 GGSQIN 182
               + 
Sbjct: 195 KLKALG 200


>gi|323467153|gb|ADX70840.1| DNA polymerase III [Lactobacillus helveticus H10]
          Length = 317

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 8/201 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
            DIETTGL    DRI E+G V++ +    ++ +   +  P   K      KL+GIT+E L
Sbjct: 36  LDIETTGLSPFRDRITELGGVKVRNGQIVDQ-YTNLVKFPKNNKVPAFITKLNGITEEQL 94

Query: 71  KDKPSF-SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            ++         EF +F  +        N   +      +L +    P+  +  +D L +
Sbjct: 95  TNEGIPAEQAIKEFREFIGDDTIIGYNVNFDLN---FLYDLSQKYNLPVLNNDYVDVLRL 151

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           A+  +P   N L    +R GI      +H  L DS     VY       ++        +
Sbjct: 152 AKVYYPRQHNRLIDCMQRAGIA--QVEQHHGLADSLDTIKVYNDFNQHFTEDLLEQAIGK 209

Query: 190 DRFFKEEKKTVPNISLLKRDK 210
            +        V    L  R+ 
Sbjct: 210 IKNVDLTGDEVDYYQLGFRNP 230


>gi|269216510|ref|ZP_06160364.1| putative ATP-dependent helicase DinG [Slackia exigua ATCC 700122]
 gi|269130039|gb|EEZ61121.1| putative ATP-dependent helicase DinG [Slackia exigua ATCC 700122]
          Length = 1045

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 69/178 (38%), Gaps = 9/178 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG    +D + +I A  +         F  F+ P G+    E  +L  I DE 
Sbjct: 58  VVLDTETTGFSQNHDELTQIAAARMKQGRIV-EWFVTFVNP-GKPIPEEVARLTDIHDED 115

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D PS      +   F  +      AHNA FD GF     +     PL  +  ID+L +
Sbjct: 116 VADAPSPDDARIQLAAFVGDSCIV--AHNAAFDKGFCT---KSQGGAPLSDNLWIDSLDL 170

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           AR   P  ++    L        +  S H A  D   L   Y  M+   +++     +
Sbjct: 171 ARIALPRLKSHR--LIDIVKAFDAPVSTHRADADVEALCAAYRIMLAAIAKMPKDLVS 226


>gi|325128584|gb|EGC51455.1| DNA polymerase III subunit epsilon [Neisseria meningitidis N1568]
          Length = 55

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 8  RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
          R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    E
Sbjct: 4  RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEE 54


>gi|308068487|ref|YP_003870092.1| DNA polymerase III subunit epsilon [Paenibacillus polymyxa E681]
 gi|305857766|gb|ADM69554.1| DNA polymerase III, epsilon chain [Paenibacillus polymyxa E681]
          Length = 245

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 4/171 (2%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTG  ++  D I+  GA+ ++      +  F   + P          +L GIT 
Sbjct: 61  VVFDLETTGFSAQHGDEILSFGAIRVVGDMVMEKEQFYTLVNP-RTVIPEHITELTGITR 119

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRIIDT 126
           E     P   +   +F  F   +     A             +  ++         ++  
Sbjct: 120 EMTDQAPPLMNGLHDFMSFVGGRVLVAHASAHDKAFLNAALWKTSKVQLTHRVLDTMMLA 179

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +  ++H +   D     +   I   H +   A + + L      +M+  
Sbjct: 180 KWLEPQQHQTYSLDELLAYQSIPIEGRHHALEDAKMTAKLWVAYVQEMLKR 230


>gi|153867763|ref|ZP_01998021.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. SS]
 gi|152144917|gb|EDN71979.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. SS]
          Length = 149

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 6/129 (4%)

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
               +I DTL++AR+ HP  +N L++LCKRY +  S R +HGALLD+ +L++VY+ M  G
Sbjct: 23  HYCQKITDTLALARKCHPGQKNTLDALCKRYHVDNSTRQRHGALLDAKILAEVYLAMTGG 82

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---- 233
              +     TNE       K+  P  S  +R   +    ++EEL  H++ +  + K    
Sbjct: 83  QVSLLVQRNTNESNNANIMKQLKPIPS--QRAILVRITPSEEELRAHEQCLIAIEKASGG 140

Query: 234 NAIWDRYIS 242
             +W ++++
Sbjct: 141 KCLWQKFMT 149


>gi|319745868|gb|EFV98158.1| DNA polymerase III PolC [Streptococcus agalactiae ATCC 13813]
          Length = 1468

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 430 YVVFDVETTGLSAANNDLIQIAASKMFKGNII-EQFDEFIDP-GHPLSAFTTELTGITDN 487

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++       +  EF +F        +AHNA FDVGF+NA  +R N   +    I     
Sbjct: 488 HVRGSKPILQVLQEFQNFCQG--TVLVAHNATFDVGFMNANYERHNLPLITQPVIDTLEF 545

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ + + H   H A  D+     +    +    +
Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH--HHMANYDAEATGRLLFIFLKEARE 595


>gi|77414701|ref|ZP_00790833.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 515]
 gi|77159245|gb|EAO70424.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 515]
          Length = 1036

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 430 YVVFDVETTGLSAANNDLIQIAASKMFKGNII-EQFDEFIDP-GHPLSAFTTELTGITDN 487

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++       +  EF +F        +AHNA FDVGF+NA  +R N   +    I     
Sbjct: 488 HVRGSKPILQVLQEFQNFCQG--TVLVAHNATFDVGFMNANYERHNLPLITQPVIDTLEF 545

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ + + H   H A  D+     +    +    +
Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH--HHMANYDAEATGRLLFIFLKEARE 595


>gi|300727971|ref|ZP_07061349.1| exonuclease [Prevotella bryantii B14]
 gi|299774813|gb|EFI71427.1| exonuclease [Prevotella bryantii B14]
          Length = 279

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 68/198 (34%), Gaps = 6/198 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+FD+ETTGLD  NDRII+I  ++++   +  R     + P  +        L GIT+E 
Sbjct: 10  IIFDLETTGLDMVNDRIIQISYIKVMPNGEEKRG-DELVNPE-KPIPAFVSDLTGITNEQ 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+ P+F  I ++  D F   +      N           L+          R+ID  +I
Sbjct: 68  VKNAPTFKEIGTKLADIFKGCDFAGFNSNRFDIPLLCEEFLRAGIDFDFSKCRLIDAQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          +   ++           A          Y  +       +   +  E
Sbjct: 128 FHK----MEKRNLAAAYKFYTGHKMEDDFEAHRADQDTEATYRVLQGELDMYDPDKQEEE 183

Query: 190 DRFFKEEKKTVPNISLLK 207
           +R        +   S   
Sbjct: 184 ERKLPNNMDVLHEFSKQN 201


>gi|288929578|ref|ZP_06423422.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288329083|gb|EFC67670.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 900

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 2/107 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGL+   D I++I AV++          F VF+    R        +      
Sbjct: 518 VVFDTETTGLNVFEDDIVQIAAVKMRAGCVVEGAAFNVFIKTE-RPIPAMLGDIPNPIVA 576

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            L+      +  +         N+  +AHNA FD   +   LQR   
Sbjct: 577 ELQHNTCLPAAQALQSFMQYVGNSMLLAHNADFDYNILRFNLQRYCP 623


>gi|77412300|ref|ZP_00788615.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
 gi|77161647|gb|EAO72643.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
          Length = 1468

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 430 YVVFDVETTGLSAANNDLIQIAASKMFKGNII-EQFDEFIDP-GHPLSAFTTELTGITDN 487

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++       +  EF +F        +AHNA FDVGF+NA  +R N   +    I     
Sbjct: 488 HVRGSKPILQVLQEFQNFCQG--TVLVAHNATFDVGFMNANYERHNLPLITQPVIDTLEF 545

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ + + H   H A  D+     +    +    +
Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH--HHMANYDAEATGRLLFIFLKEARE 595


>gi|332293348|ref|YP_004431957.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171434|gb|AEE20689.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 466

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 7/165 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG     +RI EI AV L D    ++ F   + P  +   P    L GI D  +
Sbjct: 11  VIDVETTGKGINGNRITEICAVRLKDGEVVDK-FTSLVNPE-QYIPPFITNLTGIDDAMV 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P F+ I     +      A ++AHN  FD   + +E +R+             LS  
Sbjct: 69  ADAPLFNEIADRIIE--ISSGAIFVAHNVTFDFNVLRSEFKRLGHSFTRKKLCTVRLSRK 126

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                     L +LC   GI     ++H A  D+     ++ +++
Sbjct: 127 LIPS-LFSYSLGNLCASIGIP--LNNRHRAEGDTDATVILFKRLL 168


>gi|22538049|ref|NP_688900.1| DNA polymerase III PolC [Streptococcus agalactiae 2603V/R]
 gi|25011937|ref|NP_736332.1| DNA polymerase III PolC [Streptococcus agalactiae NEM316]
 gi|76798733|ref|ZP_00780952.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 18RS21]
 gi|54036993|sp|P63984|DPO3_STRA5 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040954|sp|P63983|DPO3_STRA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|22534952|gb|AAN00773.1|AE014277_21 DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 2603V/R]
 gi|24413479|emb|CAD47557.1| DNA polymerase III (alpha subunit) [Streptococcus agalactiae
           NEM316]
 gi|76585912|gb|EAO62451.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 18RS21]
          Length = 1468

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 430 YVVFDVETTGLSAANNDLIQIAASKMFKGNII-EQFDEFIDP-GHPLSAFTTELTGITDN 487

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++       +  EF +F        +AHNA FDVGF+NA  +R N   +    I     
Sbjct: 488 HVRGSKPILQVLQEFQNFCQG--TVLVAHNATFDVGFMNANYERHNLPLITQPVIDTLEF 545

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ + + H   H A  D+     +    +    +
Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH--HHMANYDAEATGRLLFIFLKEARE 595


>gi|149376092|ref|ZP_01893858.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
 gi|149359729|gb|EDM48187.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
          Length = 483

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 74/202 (36%), Gaps = 7/202 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               DIETTG +  +DRI EIG       +     +Q  + P  R  SP    L GIT++
Sbjct: 13  FAFLDIETTGGNPSHDRITEIGIRFWRAGAVVGE-WQTLVNPETR-ISPFIESLTGITND 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P F  I         +    ++AHNA+FD GFI    +      L  ++++ T+ 
Sbjct: 71  MVADAPVFEDIAEVLEKQLKD--TIFVAHNARFDYGFIK--AEFRRLGLLFSAKVLCTVK 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           ++R+ +P  R                  +H AL D   +   +   +V            
Sbjct: 127 LSRKLYPGFRRHNMDALIERHGL-EQVQRHRALGDVAAMMAFFEHALVEKGSGAMEAAIR 185

Query: 189 EDRFFKEEKKTVPNISLLKRDK 210
                      +P   L    +
Sbjct: 186 NLLQKPSIPSNLPTDVLQNLPR 207


>gi|166240304|ref|XP_001733024.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4]
 gi|165988531|gb|EDR41046.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4]
          Length = 483

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 78/194 (40%), Gaps = 5/194 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R I FD+ET+G+ + +D IIEIGAVEL+D  +T   FQ +  P  + +      
Sbjct: 294 IPIKKGRVICFDLETSGV-TSSDTIIEIGAVELIDGCRTGVIFQSYAQPKAQIHPVSEQI 352

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
               + + +   P    + S         N+  +AHN  FD   +  EL R N       
Sbjct: 353 HQLTSLQLMSAPPIEIILASFMD---WVGNSPLVAHNLAFDKRILIQELIRYNIPFNIDH 409

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL-LDSHLLSDVYIKMMVGGSQ 180
               T+   ++ +      L+S+ ++  I      K     +DS +L+ +Y  +++    
Sbjct: 410 ICFCTMKYFKKIYNGLNYSLDSISQKLKINKLLLRKTHGALIDSEILAIIYTHLLIVDPN 469

Query: 181 INFGFKTNEDRFFK 194
                        K
Sbjct: 470 TAVKKIIANSTTNK 483


>gi|325103921|ref|YP_004273575.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145]
 gi|324972769|gb|ADY51753.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145]
          Length = 459

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 82/203 (40%), Gaps = 7/203 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
              + DIETTG  +   R+ EI AV + D  +    +   + P  +        L GI+D
Sbjct: 6   NYAIVDIETTGAYAGGSRMTEI-AVLIHDGVQVVEEYHTLINPK-QSIPHYIQVLTGISD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + D P F ++ ++ +    +    ++AHN  FD  F++++L+      L   ++    
Sbjct: 64  DMVSDAPEFENVAAKVFSLLQD--KIFVAHNVGFDYSFVHSQLRECGY-YLRSPKLCTVR 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
              +         L  LC+  GI I    +H A  D+   + ++ +++   ++ +   + 
Sbjct: 121 LSRKCFPGLPSYSLGKLCQSLGIAI--NDRHRAYGDARATAVLFGRILSADNEGHIQLQL 178

Query: 188 NEDRFFKEEKKTVPNISLLKRDK 210
            +          VP     +  +
Sbjct: 179 KKGYKEHRLPSQVPLSEFEQLPE 201


>gi|73537451|ref|YP_297818.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
 gi|72120788|gb|AAZ62974.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
          Length = 530

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 6/105 (5%)

Query: 8   RKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IVF D+ETTG D+++DRI EIG VE+       + +   L P G    P   +L GIT
Sbjct: 30  RPIVFVDLETTGADAQHDRITEIGVVEVGPEGI--QEWDTLLDP-GVSIPPFIQRLTGIT 86

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           DE ++ +P+F+SI     +        ++AHNA+FD GF+  E +
Sbjct: 87  DETVQGQPTFASIAEALAERLQG--RLFVAHNARFDYGFLKNEFR 129


>gi|296127268|ref|YP_003634520.1| DNA polymerase III, epsilon subunit [Brachyspira murdochii DSM
           12563]
 gi|296019084|gb|ADG72321.1| DNA polymerase III, epsilon subunit [Brachyspira murdochii DSM
           12563]
          Length = 252

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 76/194 (39%), Gaps = 5/194 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTGL  + D+IIEIGA++  D  +    F   +                IT++ +
Sbjct: 63  IIDVETTGLKPREDKIIEIGAIKYRDNKEI-DYFSTLVK--VDYIPNFISSYTNITNKMV 119

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K+ P       +F+DF  +     + +N  FD+ F+   L  ++   L  +     +   
Sbjct: 120 KNAPRVDEAIKQFYDFVGD--DILVGYNVPFDIKFLYDALYEVSNGELLLNNDFIDVMYI 177

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
            ++      +   +       IS  + H A+ D  L S +Y  +     +    F     
Sbjct: 178 AKRVLKDLENYKQVTVASYYNISIDNLHRAMGDCKLCSAIYECLQKDILEKWGAFNKFYK 237

Query: 191 RFFKEEKKTVPNIS 204
           ++ K + K   N +
Sbjct: 238 KYPKIKNKIENNKN 251


>gi|225871273|ref|YP_002747220.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047]
 gi|225700677|emb|CAW95265.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047]
          Length = 1465

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNII-EQFDEFINP-GHPLSAFTTELTGITDN 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L        +   F  F        +AHNA FDVGF+NA   R     +    I     
Sbjct: 485 HLVGAKPIQQVLEAFQAFCQG--TILVAHNASFDVGFMNANYDRYGLAKISQPVIDTLEL 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEARE 592


>gi|262341288|ref|YP_003284143.1| DNA polymerase III subunit epsilon [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272625|gb|ACY40533.1| DNA polymerase III subunit epsilon [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 256

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 76/204 (37%), Gaps = 9/204 (4%)

Query: 2   IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           ++    R I  FDIE TG++   DRIIEI  +++  + ++ ++T+   +CP G    P++
Sbjct: 1   MKLKLHRPICFFDIEATGINIGKDRIIEISILKIFPNGNQEDKTW--LVCP-GIPIPPQS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGI +E ++ K  F  +    +      +      N           L+      + 
Sbjct: 58  TAIHGIKNEDVEGKLKFKDVAFSIFKMIENTDLAGYNSNRFDIPILAEEMLRAGISFDIK 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             + ID   I  +  P       S   +Y  +      H +  D+    ++ +  +    
Sbjct: 118 KHKTIDVQVIFHKMEP----RTLSAAYKYYCSKELIKAHSSKEDAFATYEILLSQLEKYE 173

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203
            +    K+      ++    +   
Sbjct: 174 NLKKDVKSLNQFSHQKNIADLAGF 197


>gi|195978859|ref|YP_002124103.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975564|gb|ACG63090.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 1465

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNII-EQFDEFINP-GHPLSAFTTELTGITDN 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L        +   F  F        +AHNA FDVGF+NA   R     +    I     
Sbjct: 485 HLVGAKPIQQVLEAFQAFCQG--TILVAHNASFDVGFMNANYDRYGLAKISQPVIDTLEL 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEARE 592


>gi|270284149|ref|ZP_05965623.2| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093]
 gi|270277190|gb|EFA23044.1| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093]
          Length = 214

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 4/97 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  DIETTGL  + + I EIGAV + D    +R F + + P G+        L GI+D 
Sbjct: 18  YISLDIETTGLAPRQETITEIGAVRVRDGRIADR-FSMLINP-GKHIPSRITALTGISDA 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            ++D P        F D+ +      I HN +FD+ F
Sbjct: 76  MVEDAPMIDEAIPAFVDWVDGDR--LIGHNIRFDLSF 110


>gi|27379228|ref|NP_770757.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27352379|dbj|BAC49382.1| blr4117 [Bradyrhizobium japonicum USDA 110]
          Length = 223

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 69/169 (40%), Gaps = 4/169 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D ETTGL+ + D ++ I A+++  +   T+  F+  + P+      EA+K+H +  
Sbjct: 32  FVVIDCETTGLNVRTDNVVAIAAIKIRGNRILTSARFEAIVHPDSELE-AEAIKIHRLRR 90

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             ++  P    +   F  F   +     ++  +      +I   +     +       + 
Sbjct: 91  SDVEASPIVWKVLPGFLHFIGPRPLIGYYVDFDIAMLDKYILPLVGIELPNERIEVSRLY 150

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                    P++  DL+     + + I    +H A  D+ + + +++++
Sbjct: 151 YERKYGNAPPNTEVDLSFAAILHDLCIPPLGQHDAFNDALMTAMMFLQL 199


>gi|301166002|emb|CBW25576.1| putative DNA polymerase III PolC-type alpha subunit [Bacteriovorax
           marinus SJ]
          Length = 295

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 93/214 (43%), Gaps = 7/214 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTGL    D++IE+ A+++  Y +    F   + P   +     + +HGIT++ 
Sbjct: 21  VALDLETTGLSPLIDKVIELSAIKVTPYGE--EVFDELIDPK-IEIPKFTIDIHGITNDM 77

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++ K +   +  EF +F        +AHNAKFD+GFI   + +I     +          
Sbjct: 78  VQGKRTLDKVLPEFINFIGS--LPLVAHNAKFDLGFIVFGMHQIGLPLHESHVYCSCKFS 135

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
                 S+   L++L     + I   + H AL D+     VY + +    + +       
Sbjct: 136 RYALRGSTNFKLSTL--TTELEIPLENHHRALDDAIACLKVYERGLRVFKKPDRKILNEG 193

Query: 190 DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
             F  ++     +  + K+ KPL  ++  +E+ E
Sbjct: 194 HLFKLKDFDKQDDFEIPKKLKPLQDKVKDQEMIE 227


>gi|170017004|ref|YP_001727923.1| Rad3-related DNA helicase [Leuconostoc citreum KM20]
 gi|169803861|gb|ACA82479.1| Rad3-related DNA helicase [Leuconostoc citreum KM20]
          Length = 801

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 79/206 (38%), Gaps = 8/206 (3%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+ETTG   +K  RII+IG   + +       F+ F+ P  +       +L  I+ 
Sbjct: 7   FVVVDLETTGQSVAKGGRIIQIGMTFIKNRRII-DHFESFVNP-AQPIDRNIQQLTHISQ 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +K+ P F  I     +   +     IAHN  FD  ++N E  R     L  + I    
Sbjct: 65  KEVKNAPYFEEIAPVIQNLLTD--TVIIAHNVNFDYPYLNDEFARTGFPELTNAAIDTVQ 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-INFGFK 186
                   +    L  L     IT    + H A  D+H  + +++ +     Q      +
Sbjct: 123 LAQILLPTAPGYRLLDLTTYLNIT--LNNAHRANADAHATALLFLSLWQRAEQLPTLVLQ 180

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPL 212
             ++  +   ++T   + L+K     
Sbjct: 181 QLQNGNWPLLRQTQAFLQLIKAKSKR 206


>gi|323126468|gb|ADX23765.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 1465

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+      ++   F DF  +  +  +AHNA FDVGF+NA  +R N   +    I     
Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHNLPKITQPVIDTLEF 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLRDARE 592


>gi|115350920|ref|YP_772759.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD]
 gi|115280908|gb|ABI86425.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
          Length = 375

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 8/165 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  S   RI EIG VE+     +  T+   + P G+   P   +L GI+D+ 
Sbjct: 16  VFVDLETTGGSSAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQSIPPFIQQLTGISDDM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+S+    ++  +     ++AHNA FD GF+ AE +R                 
Sbjct: 73  VRDAPSFASLAPTLFERLDG--KLFVAHNASFDRGFLRAEFERAGIAFNPDVLCT-VRLS 129

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  +R+ L++L +R+G+     ++H AL D+ LL   + ++
Sbjct: 130 RALFPREARHGLDALIERHGLV--PAARHRALADADLLWQFWRQL 172


>gi|53714270|ref|YP_100262.1| DNA polymerase III subunit epsilon [Bacteroides fragilis YCH46]
 gi|60682326|ref|YP_212470.1| putative DNA polymerase III subunit epsilon [Bacteroides fragilis
           NCTC 9343]
 gi|253564786|ref|ZP_04842242.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5]
 gi|265766238|ref|ZP_06094279.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
 gi|52217135|dbj|BAD49728.1| DNA polymerase III epsilon chain [Bacteroides fragilis YCH46]
 gi|60493760|emb|CAH08550.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis
           NCTC 9343]
 gi|251946251|gb|EES86628.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5]
 gi|263253906|gb|EEZ25371.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
 gi|301163800|emb|CBW23355.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis
           638R]
          Length = 257

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 65/172 (37%), Gaps = 8/172 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +  +DRI+EI  +++  + ++ ++T +  + P       E+  +HGI D 
Sbjct: 10  VFFDLETTGTNINSDRIVEICYLKVYPNGNEESKTLR--INPE-MPIPAESSAVHGIYDA 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +     +     +      N           L+      +   + +D   
Sbjct: 67  DVADCPTFKEVAKSIANDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMSKRKFVDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           I  +          +   ++    +    H A  D+    +V +  +    +
Sbjct: 127 IFHK----MEQRTLTAAYKFYCGRNLEDAHTAEADTRATYEVLMAQLDRYPE 174


>gi|326522268|dbj|BAK07596.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 323

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 69/179 (38%), Gaps = 13/179 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTG   + DRIIE    +L      N TFQ  + P  R+    A+          
Sbjct: 125 VFDIETTGFSRRGDRIIEFAVRDLTGGK--NSTFQTLINPE-REVKNAAVHGISTNMVCS 181

Query: 71  KDKPSFSSIFSEFWDFFNEQN-----AEWIAHN-AKFDVGFINAELQRINKDPLDPSRII 124
            D P F         +   +        W+AHN   FDV F+  E QR  ++       +
Sbjct: 182 SDIPRFGEFIPILLQYVWSRQVAGKPVMWVAHNGKTFDVPFLIFEFQRCKQEMPGDWLFV 241

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSK----HGALLDSHLLSDVYIKMMVGGS 179
           DTL IA++   S+   ++S   +  +           H A+ D   L  V  K+     
Sbjct: 242 DTLPIAKQLVDSNGKKISSASMKNLVEHYKIPVDGKAHRAMRDVTALCYVLQKLTFELK 300


>gi|251781676|ref|YP_002995978.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390305|dbj|BAH80764.1| DNA polymerase III subunit alpha [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 1465

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+      ++   F DF  +  +  +AHNA FDVGF+NA  +R N   +    I     
Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHNLPKITQPVIDTLEF 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLRDARE 592


>gi|225867817|ref|YP_002743765.1| DNA polymerase III PolC-type [Streptococcus equi subsp.
           zooepidemicus]
 gi|197941223|gb|ACH78331.1| DNA polymerase [Streptococcus equi subsp. zooepidemicus]
 gi|225701093|emb|CAW97928.1| DNA polymerase III PolC-type [Streptococcus equi subsp.
           zooepidemicus]
          Length = 1465

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNII-EQFDEFINP-GHPLSAFTTELTGITDN 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L        +   F  F        +AHNA FDVGF+NA   R     +    I     
Sbjct: 485 HLVGAKPIQQVLEAFQAFCQG--TILVAHNASFDVGFMNANYDRYGLAKISQPVIDTLEL 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEARE 592


>gi|333030104|ref|ZP_08458165.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
 gi|332740701|gb|EGJ71183.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
          Length = 256

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 68/192 (35%), Gaps = 8/192 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +  +DRI+EI  +++  + ++ ++T +  + P       E+  +HGI DE
Sbjct: 10  VFFDLETTGTNINSDRIVEICYLKVHPNGNEESKTLR--INPE-MPIPAESSAIHGIFDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +           +      N           L+      L   + +D   
Sbjct: 67  DIADCPTFKEVAKNIAKDIEGSDLAGFNSNRFDIPLLAEEFLRAGVDIDLSKRKFVDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I  +          S   ++    +    H A  D+    +V +  +    ++       
Sbjct: 127 IFHK----MEQRTLSAAYKFYCDKNLEDAHSAEADTRATYEVLMAQLDRYDELKNDIAFL 182

Query: 189 EDRFFKEEKKTV 200
            D         +
Sbjct: 183 SDYSSYNNNVDL 194


>gi|301167913|emb|CBW27498.1| putative DNA polymerase III PolC-type [Bacteriovorax marinus SJ]
          Length = 438

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 6/174 (3%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N +   VFD+ETTG + K+D+IIEIG V++ ++   ++     + P  +       KL  
Sbjct: 9   NNLEFCVFDLETTGGNHKSDKIIEIGLVKIKNFEVIDQK-NYLIQPEIK-IPEFIQKLTS 66

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I +E +KD P    +  E   F  +  +  +AHN  FDV F N+ L+R+ K  L    + 
Sbjct: 67  IKEEDVKDSPVIEDVIDEILKFMGD--SILVAHNTSFDVPFFNSVLKRLGKPQLKNKSLC 124

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             L           ++LN + K +GI       H AL D+   +++ +  +   
Sbjct: 125 TNLMTKYLIPNLMNSNLNYMSKIFGIKHKKA--HRALDDALATAELLLIYLKIY 176


>gi|297566609|ref|YP_003685581.1| DNA polymerase III subunit epsilon [Meiothermus silvanus DSM 9946]
 gi|296851058|gb|ADH64073.1| DNA polymerase III, epsilon subunit [Meiothermus silvanus DSM 9946]
          Length = 252

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 10/178 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL +  + IIEI  + L    +  + FQ F+ P G    P   +L GIT   
Sbjct: 80  VVLDLETTGLSALENEIIEIAFIRLEGEKR--QVFQRFVNP-GSPIPPFISRLTGITHRD 136

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+  P   ++  E      +  +  I  NA FD+GF+    + +       + +IDT++ 
Sbjct: 137 LEGAPDVYTVLEEALPLLED--SVLIIQNAPFDLGFLR--PRFLRLGYKMDNEVIDTVAW 192

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGSQINFG 184
           ARR  P                 +  S+H AL D       +     M+  G  +  G
Sbjct: 193 ARRALPGLSKRGLDHLAWAFDLDTIVSRHRALGDVEATLLVAKEMYYMLTAGKPLALG 250


>gi|325478691|gb|EGC81802.1| CRISPR-associated endoribonuclease Cas2 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 292

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +V DIET+GLD +  +IIEIGAV      +    F+  +    +  S E +KL GITD
Sbjct: 124 KYVVVDIETSGLDYEKHKIIEIGAVLTNSQGEVLDKFESLIRQEIK-LSNEIIKLTGITD 182

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
             L +      +  +F  F           N   
Sbjct: 183 NDLINGGDEKKVLEDFVCFIKNHPLVGYNFNFDM 216


>gi|28210814|ref|NP_781758.1| DNA polymerase III subunit epsilon [Clostridium tetani E88]
 gi|28203252|gb|AAO35695.1| DNA polymerase III alpha subunit [Clostridium tetani E88]
          Length = 380

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 7/197 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGL    D+IIEI A++        + +   + P        A +++ IT+ 
Sbjct: 84  FVVIDLETTGLYPVTDKIIEITAIKYKSGQIVEK-YNTLINPK-INIPKRATEINNITNN 141

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  E   F  E     +AHNA FD+ F+NA L  IN++  + +     LS
Sbjct: 142 MVKDSPVIEDVLPELLKFIKE--YPLVAHNASFDIKFLNANLALINREIKNVAIDTLQLS 199

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
            A      +            + IS  + H AL D    +++Y+      +     F   
Sbjct: 200 RAMYTFLPNHKLTTIK---EHLCISEDNSHRALPDCITTAEIYLDYCYKANNNLKEFNEL 256

Query: 189 EDRFFKEEKKTVPNISL 205
           E   FK  K  +   + 
Sbjct: 257 EKACFKVIKDMLNKNNR 273


>gi|256827805|ref|YP_003151764.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Cryptobacterium curtum DSM 15641]
 gi|256583948|gb|ACU95082.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Cryptobacterium curtum DSM 15641]
          Length = 1043

 Score = 63.4 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 9/188 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG+    D + +I A  +++       F  F+ P GR    E   L  I +  
Sbjct: 38  VVIDTETTGISFVRDELTQIAAARMVEGKIV-DWFVTFVNP-GRPIPEEISHLTSIYESD 95

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D PS      +  DF  E     +AHNA FD    +   +    + L  +  ID+L +
Sbjct: 96  VADAPSPEEAVFQLVDFVGESC--LVAHNAAFDK---HFCTKPATGESLTHNIWIDSLDL 150

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           AR   P  ++    L        +  S H A  D   L  V+  ++     ++ G     
Sbjct: 151 ARIALPRLKSHR--LLDLVRAFDAPLSTHRADADVEALCAVFRILLAAVDAMSQGLIDEI 208

Query: 190 DRFFKEEK 197
                EE+
Sbjct: 209 AAMATEEE 216


>gi|256421379|ref|YP_003122032.1| exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis
           DSM 2588]
 gi|256036287|gb|ACU59831.1| Exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis
           DSM 2588]
          Length = 257

 Score = 63.4 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 66/186 (35%), Gaps = 6/186 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG +   DRIIEI  +++       +T    + P G    P +  +HGI+DE +
Sbjct: 12  VIDLETTGTNVATDRIIEIAIIKVFPDKSV-QTKVKRIHP-GMPIPPASTAIHGISDEDI 69

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD P+F    +E   +    +      N           ++   +  LD           
Sbjct: 70  KDCPTFKQCANELRQYMENCDLAGYNSNRFDI----PLLVEEFLRAGLDFDTKDRRFIDV 125

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           ++          S   ++       + H A  D+    ++    +    Q+        +
Sbjct: 126 QKIFHLMEKRTLSAAYKFYCDKDLTNAHSAEADALATYEILEAQLSRYEQLQAEVAPLAE 185

Query: 191 RFFKEE 196
              +++
Sbjct: 186 FTKEDD 191


>gi|326772455|ref|ZP_08231739.1| DNA polymerase III, epsilon subunit [Actinomyces viscosus C505]
 gi|326637087|gb|EGE37989.1| DNA polymerase III, epsilon subunit [Actinomyces viscosus C505]
          Length = 280

 Score = 63.4 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 57/150 (38%), Gaps = 4/150 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL    D I+E+  V      +  R++   + P G         +HG+  E
Sbjct: 42  YAVVDLETTGLSPTTDSILEVALVLTDAAGRVERSWSTLIDP-GAGVDVGPTHIHGLVAE 100

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L   P F  +               +AHNA+FDVGF+  EL              + T+
Sbjct: 101 ELIGAPGFDEVADLLVADLAG--RAVVAHNARFDVGFLTQELGTRGLLDRGARVPRVCTM 158

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK 157
             AR    +    L + C+  G+ I     
Sbjct: 159 EWARHFMTTPSRRLTTCCEVAGVEIGRHHN 188


>gi|71904322|ref|YP_281125.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS6180]
 gi|123747742|sp|Q48R90|DPO3_STRPM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|71803417|gb|AAX72770.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS6180]
          Length = 1465

 Score = 63.4 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D     ++   F DF  +  +  +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 485 HLQDAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLRDARE 592


>gi|88802420|ref|ZP_01117947.1| DNA Pol III Epsilon Chain [Polaribacter irgensii 23-P]
 gi|88781278|gb|EAR12456.1| DNA Pol III Epsilon Chain [Polaribacter irgensii 23-P]
          Length = 275

 Score = 63.4 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG++   DRI+EI  +++  + +K ++T+   + P   +    ++ +HGIT+E
Sbjct: 10  VFFDLETTGVNIATDRIVEIAVLKVFPNGNKESKTW--LVNPE-MEIPQASIDVHGITNE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK 100
            +  +P+F  +  E        +      N  
Sbjct: 67  KVASEPTFKMLAQEVSKLMAGCDLAGFNSNRF 98


>gi|256847046|ref|ZP_05552492.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256715710|gb|EEU30685.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 1448

 Score = 63.4 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 6/198 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL +  D++IE+ A ++ D    +R F  F+ P G   S +  +L  ITD+
Sbjct: 428 YVIFDVETTGLSAIYDKVIELSATKMKDGKVLDR-FDEFIDP-GFPLSEQTTELTSITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   S   +F  F DF     +    HN  FD+GF+N   QR +   +    I     
Sbjct: 486 MVQGSKSEEEVFKMFQDFCAG--SIIAGHNVSFDMGFMNTGYQRHHLPEITQPVIDTLPL 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       LN+L K++ +++ H   H A  D+     +    +    +       +
Sbjct: 544 ARFLYPDLRGYRLNTLSKKFKVSLEH--HHRANYDAEATGHLLHIFLKDAEKRYQVVYVD 601

Query: 189 EDRFFKEEKKTVPNISLL 206
           +      +     +    
Sbjct: 602 DLNKHMTDNGAYRHARPF 619


>gi|332993984|gb|AEF04039.1| ribonuclease T [Alteromonas sp. SN2]
          Length = 218

 Score = 63.4 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++  D ++EI AV +          ++TF   + P  G    P AL+ +G
Sbjct: 18  VVIDVETAGFNAGTDALLEIAAVTVKMEEDGLIYPDQTFHYHVDPFEGANLEPAALEFNG 77

Query: 65  ITDE--------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   S      +     + Q +  +AHNA FD  F+NA + R N  
Sbjct: 78  IDPHCALRGAIEESEAMKSLCKGIRKAQKDADCQRSVIVAHNATFDQSFVNAAIARCNIK 137

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + +       +  L   C+  GI    +  H AL D+   ++++  M+ 
Sbjct: 138 RTPFHPFVSFDTTSLAGLTLGQTVLVKACRAAGIEFDQKEAHSALYDAQKTTELFCFMVN 197

Query: 177 GGSQIN 182
               + 
Sbjct: 198 RYKALG 203


>gi|254252965|ref|ZP_04946283.1| DNA polymerase III [Burkholderia dolosa AUO158]
 gi|124895574|gb|EAY69454.1| DNA polymerase III [Burkholderia dolosa AUO158]
          Length = 375

 Score = 63.4 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  S   RI EIG VE+     +  T+   + P G+   P   +L GI+D  
Sbjct: 16  VFVDLETTGGSSAEHRITEIGVVEVGPLGVS--TWTTLVNP-GQSIPPFIQQLTGISDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+S+    ++  +     ++AHNA FD GF+ AE +R                 
Sbjct: 73  VRDAPSFASLAPALFERLDG--KLFVAHNASFDRGFLRAEFERAGYAFNPDVLCT-VRLS 129

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  +R+ L++L +R+G+     ++H AL D+ LL   + ++
Sbjct: 130 RALFPREARHGLDALIERHGLV--PSARHRALADADLLWQFWRQL 172


>gi|319953942|ref|YP_004165209.1| exonuclease rnase t and DNA polymerase iii [Cellulophaga algicola
           DSM 14237]
 gi|319422602|gb|ADV49711.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga algicola
           DSM 14237]
          Length = 258

 Score = 63.4 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 79/214 (36%), Gaps = 9/214 (4%)

Query: 2   IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           ++    R I  FD+ETTG++   DR++EI  +++  + +K ++T+   + P       E 
Sbjct: 1   MQLKLTRPICFFDLETTGINVAKDRVVEIAILKIHPNGNKESKTW--LVNPE-MVIPDEV 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +HGIT+E + ++P+F  +  + ++   + +      +            + + +  +D
Sbjct: 58  IAVHGITNEKVANEPTFKELSKDIYNMIKDSDLGGFNSDRFDI----PLLAEEMLRSEID 113

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                      +               ++         H A  D++   +V +  +    
Sbjct: 114 FDMKNRVAVDVQTIFHKMEKRTLGAAYKFYCDKDLIDAHSAAADTNATYEVLLSQLDRYP 173

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
           ++    K   +    +         +L  D+   
Sbjct: 174 ELENNMKMLAEFSSHKRTVDFAGFIILDEDEEEV 207


>gi|24378642|ref|NP_720597.1| DNA polymerase III PolC [Streptococcus mutans UA159]
 gi|32469722|sp|Q8DWE0|DPO3_STRMU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|24376501|gb|AAN57903.1|AE014864_1 DNA polymerase III, alpha subunit [Streptococcus mutans UA159]
          Length = 1465

 Score = 63.4 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 13/211 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S     L GITD+
Sbjct: 425 YVVFDVETTGLSAINNDLIQIAASKMHKGNIV-EQFDEFIDP-GHPLSQFTTDLTGITDQ 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K     S +  EF  F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 483 HVKGAKPISQVLQEFQSFCQD--TVLVAHNATFDVGFMNANYERHDLPKITQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-------I 181
                    R+ L  L KR+ +++ H   H A  D+     +    +    +       +
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEAKEKHGVNNLL 598

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
           +   K  +D  +K+ +     I +L +    
Sbjct: 599 DLNTKIVDDNSYKKARVKHATIYVLNQKGLK 629


>gi|327404630|ref|YP_004345468.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823]
 gi|327320138|gb|AEA44630.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM
           16823]
          Length = 284

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 10/193 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR--TFQVFLCPNGRKNSPEALKLHGI 65
             ++ D+ETTGLD   DRIIEI  ++    + T     +   + P     S E+ ++ GI
Sbjct: 8   NFVMLDLETTGLDVAKDRIIEIALIKT---TPTGEQSEYCKRVNP-TIPISKESAEITGI 63

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +  +P+F  +  E   F  + +      N           L+  +   ++  + ID
Sbjct: 64  TDEMVATEPTFEQLADEIAAFIGDADLGGYNSNKFDIPVLAEEFLRISHSFKINDRKFID 123

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             +I  +          +   ++       + H AL D+ +  DV+   +     +    
Sbjct: 124 VQNIFHK----MEQRTLAAAYQFYCKEPMENAHNALYDTKVTLDVFKAQLERYPDLAKSI 179

Query: 186 KTNEDRFFKEEKK 198
               D   +  ++
Sbjct: 180 PELADFSRQGNQE 192


>gi|154488710|ref|ZP_02029559.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis
           L2-32]
 gi|154082847|gb|EDN81892.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis
           L2-32]
          Length = 210

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 65/174 (37%), Gaps = 9/174 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTGL   K DR IEIG V +          +  +       S  A  +H IT 
Sbjct: 5   FAVVDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLI---HVDRSVGASWVHHITA 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L   P F  I  E  D        ++AHN  FD  F+ AE        +   +     
Sbjct: 62  RDLLHAPDFEGIAHELRDLLAG--RVFVAHNVSFDSRFLLAEYS-RMGASIPVHQSTMLC 118

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++   +    R  L+  C  +GI   +   H AL D+H  + +  +++      
Sbjct: 119 TMKLSRSLIGRGKLSDCCDYFGIA--NEDAHSALSDAHATALLLGRLLEADPNW 170


>gi|41408028|ref|NP_960864.1| hypothetical protein MAP1930 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396383|gb|AAS04247.1| hypothetical protein MAP_1930 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 643

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +V D+ETTG  S +      D I EIGAV++         F   + P  R   P+ ++L
Sbjct: 40  FVVVDLETTGGRSTSTEETAPDAITEIGAVKVRGGVVLGE-FATLVDPQ-RSIPPQIMRL 97

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            GIT   + D P+  ++   F +F      A  +AHNA FDVGF+ A  Q+ +     P 
Sbjct: 98  TGITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRPR 157

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +       R         +          ++ +  H AL D+    DV   ++  
Sbjct: 158 VLCTVRLARRVLSREEAPSVRLASLARLFAVTTQPTHRALDDARATVDVLHALIER 213


>gi|150377384|ref|YP_001313979.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419]
 gi|150031931|gb|ABR64046.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium medicae
           WSM419]
          Length = 308

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 76/239 (31%), Gaps = 33/239 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEALKLH 63
           R ++ D ETTGL+ + D IIEIGAV     D         ++  L        PE  +L 
Sbjct: 54  RGLILDTETTGLNHRKDEIIEIGAVAFTFDDAGNIGDVIDLYGGLQQPSISVPPEITRLT 113

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITDE +  +               E     IAHNA FD  F  A      +        
Sbjct: 114 GITDEMVLGQKI----DLHRLRAVVEPADLIIAHNAGFDRPFCEAFSPIFARKAW----- 164

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV------------Y 171
               S++    P+   +   L    G        H A+ D   L +V            +
Sbjct: 165 --ACSVSEIDWPARGFEGTKLGYLIGQAGYFHEGHRAVDDCFALLEVLAQGRAEVERSPF 222

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKE--ELDEH 224
            ++     +           F  +E               R K  +  I +E  + + H
Sbjct: 223 AELYGASQRSRIRLFAENSPFDMKEHLKARGYRWSDGSDGRPKSWWIEIAEEALDDELH 281


>gi|19746871|ref|NP_608007.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS8232]
 gi|24418360|sp|Q8NZB5|DPO3_STRP8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|19749113|gb|AAL98506.1| DNA polymerase III alpha chain [Streptococcus pyogenes MGAS8232]
          Length = 1465

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+      ++   F DF  +  +  +AHNA FDVGF+NA  +R N   +    I     
Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHNLPKITQPVIDTLEF 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLRDARE 592


>gi|332653359|ref|ZP_08419104.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Ruminococcaceae bacterium D16]
 gi|332518505|gb|EGJ48108.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Ruminococcaceae bacterium D16]
          Length = 1396

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/106 (46%), Positives = 61/106 (57%), Gaps = 5/106 (4%)

Query: 9   KIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +IV FDIETTGLD + + IIEIGA  L +   T  TF  F+ P GR  SPE + L GITD
Sbjct: 370 EIVCFDIETTGLDKRREVIIEIGAAVLKNGEVT-ETFNTFVAP-GRILSPEIIHLTGITD 427

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           E L   PS       F DF  +      AHNA+FD+GFI+   ++ 
Sbjct: 428 EMLVGAPSQEEALRAFLDFVGD--RPLAAHNAEFDMGFISTGCRKY 471


>gi|194467815|ref|ZP_03073801.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23]
 gi|194452668|gb|EDX41566.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23]
          Length = 283

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 6/98 (6%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL     D+II++ A++ +D      TF   + P+G  N+ +++  + I++
Sbjct: 15  YVSVDTETTGLYPMYGDKIIQLSAIKYIDDKLV-DTFDTLINPDGSNNNAKSV--NNISE 71

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
             LK++P+F  +  +F +F  +    W+ HN  FD  F
Sbjct: 72  SSLKNQPTFDEVIGDFVNFVED--LPWVGHNLSFDFSF 107


>gi|326790794|ref|YP_004308615.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM
           5427]
 gi|326541558|gb|ADZ83417.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM
           5427]
          Length = 237

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 64/167 (38%), Gaps = 6/167 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +V DIETTG       IIEIGAV + +     + F   + P  +  S   + + GIT+
Sbjct: 3   KYVVVDIETTGAHPVQSEIIEIGAVYIEEGQ-VKKIFNELVRP-TQIISDYIISITGITN 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + D P    +   F DF  +     I HN       +            +   +   +
Sbjct: 61  EMVADAPPIEEVMPRFIDFCED--VPLIGHNIILFDYRMLKTKATALGFTFEKMGVDTLV 118

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +         L  LC+ Y   IS  + H A  D+    +++ K+
Sbjct: 119 ISRKMLAHLPSRKLGDLCEHY--AISLENAHRAYHDAFATYELFEKL 163


>gi|116333947|ref|YP_795474.1| DNA polymerase III PolC [Lactobacillus brevis ATCC 367]
 gi|122269369|sp|Q03QS9|DPO3_LACBA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116099294|gb|ABJ64443.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           brevis ATCC 367]
          Length = 1445

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 6/171 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV++   +  ++ F+ F+ P G   S +   L  ITD+
Sbjct: 425 YVVFDVETTGLSAIYDKVIELSAVKMEHQNVVDQ-FEEFIDP-GFPLSEQTTNLTSITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    S   +F  F +F  +  A  + HN  FDVGF+N   QR     +    I     
Sbjct: 483 MVAGSKSEEEVFKLFREFCGD--AIIVGHNVTFDVGFMNTGYQRHGMAEISNPIIDTLTL 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                       LN+L KR+ +++ H   H A+ D+     +    +    
Sbjct: 541 ARFLYPTLKSYRLNTLAKRFHVSLEH--HHRAVYDAESTGHLNYLFLKDAE 589


>gi|34496475|ref|NP_900690.1| DNA-directed DNA polymerase III subunit epsilon [Chromobacterium
           violaceum ATCC 12472]
 gi|34102328|gb|AAQ58694.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Chromobacterium violaceum ATCC 12472]
          Length = 481

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 7/148 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTG +   DRI E+G V +             + P G+   P    + GI++E +
Sbjct: 8   IIDLETTGGNIARDRITEVGMVLIDGERV--ERLSWLVNP-GQPIPPFIENMTGISNEMV 64

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P FS+   E  D         +AHNA+FD GF+  E +R        +R + T+ ++
Sbjct: 65  AGAPPFSAQADELLDRLQG--RLLLAHNARFDYGFLKNEFRRHGLR--FQARALCTVKLS 120

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKH 158
           RR +P                       
Sbjct: 121 RRLYPQHFKHSLDSLIARHGIDMPERHR 148


>gi|309812650|ref|ZP_07706394.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185]
 gi|308433345|gb|EFP57233.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185]
          Length = 608

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 67/174 (38%), Gaps = 3/174 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ET G       I EIGAV++         F   + P G    P+  +L GIT  
Sbjct: 28  FVIVDLETAGGRPGAQGITEIGAVKVRGGEVLGE-FATLVDP-GCAIPPQIQRLTGITTA 85

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P  +S+   F++F    +A  +AHNA FDVGF+ A  + +      P+ +     
Sbjct: 86  MVHNAPKLASVLPAFFEFL-GPDAVLVAHNAPFDVGFLTAAARDLEVPWPAPAVVDTVKL 144

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
                      +            S    H AL D+    DV   ++     + 
Sbjct: 145 ARALVPRDEVRNHRLGTLAAHFGASVNPNHRALADAQATVDVLHALLSRAGSLG 198


>gi|261496609|ref|ZP_05992989.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307812|gb|EEY09135.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 221

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET GL+++ D ++E+ A+ +      Y   ++     + P  G   +PE+LK +G
Sbjct: 31  VVIDVETAGLNAQTDALLELAAITVKMDENGYLVEDQKCHFHIKPFEGANINPESLKFNG 90

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +             P    +          Q A  +AHNA FD  F+ A ++RIN  
Sbjct: 91  IDIDNPLRGAVAENIAIPEMFKMVRRAMKEQGCQRAIIVAHNATFDQSFLQAAIKRINAK 150

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I       H AL D+   ++++  M+ 
Sbjct: 151 RDPFHPFAMFDTATLAGFMYGQTVLVKACQAAQINFDGHQAHSALYDTEKTTELFCAMVN 210

Query: 177 GGSQIN 182
               + 
Sbjct: 211 KLKDLG 216


>gi|189500246|ref|YP_001959716.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides
           BS1]
 gi|189495687|gb|ACE04235.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides
           BS1]
          Length = 232

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 64/182 (35%), Gaps = 8/182 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +VFD ETTG D+  D +I IGAV +   +     +F+V +  +             + 
Sbjct: 44  RYVVFDTETTGFDTSRDLVISIGAVAINALHIDVQDSFEVLIRRDNVGEKDAVTTHGLLC 103

Query: 67  DEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            +  +      S+ +            +     +A   +    +   EL     D    +
Sbjct: 104 KDLDEGGEEQESLDAFINYVSTGVLVAQHADFDVAMINRMLHRYYGFELFNHVIDTASLA 163

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           + ++        H S    L+ L  RY I +    +H A  D+ L + ++  ++      
Sbjct: 164 KRLEKGPYFNLAHKSGEYRLDMLLDRYNIRMH--DRHTAAGDAFLTARLFQMLLAKAEHA 221

Query: 182 NF 183
             
Sbjct: 222 GI 223


>gi|221632364|ref|YP_002521585.1| exonuclease family [Thermomicrobium roseum DSM 5159]
 gi|221156848|gb|ACM05975.1| exonuclease family [Thermomicrobium roseum DSM 5159]
          Length = 982

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  DIE TG+D + D IIE+ A++  +     R F+  + P  R        L G+T  
Sbjct: 5  YVALDIEATGMDPERDEIIEVAAIKFREEEVLER-FETLVQP-RRPVPLAVASLTGLTMR 62

Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
           L+  PSF  I      F         + + 
Sbjct: 63 DLRRAPSFQQIAPRLRQFVRNYPIVGQSPDY 93


>gi|171742687|ref|ZP_02918494.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
 gi|171278301|gb|EDT45962.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
          Length = 328

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 9/175 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTGL+  + DR IEIG V +          +  +          A  +H I+ 
Sbjct: 17  YAVVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLIR---VHRDIGAQWIHHISA 73

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L   P F  I  E  D        ++AHN  FD  F+ +E +      +  +      
Sbjct: 74  VELIHAPEFEGIARELRDLLAG--RVFVAHNVAFDSKFLLSEYR-RLGTDIPVNSHTMLC 130

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++   +       L   C+ +GI   +   H AL D+H  + +  ++M    + +
Sbjct: 131 TMKLSRSLIGVGSLADCCREFGID--NEDAHSALSDAHATALLLGRLMDADPEWS 183


>gi|172059933|ref|YP_001807585.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6]
 gi|171992450|gb|ACB63369.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 375

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 8/165 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  +   RI EIG VE+     +  T+   + P G+   P   +L GI+D+ 
Sbjct: 16  VFVDLETTGGSTAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQSIPPFIQQLTGISDDM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+S+    ++  +     ++AHNA FD GF+ AE +R                 
Sbjct: 73  VRDAPSFASLAPTLFERLDG--KLFVAHNASFDRGFLRAEFERAGIAFNPDVLCT-VRLS 129

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  +R+ L++L +R+G+     ++H AL D+ LL   + ++
Sbjct: 130 RALFPREARHGLDALIERHGLV--PAARHRALADADLLWQFWRQL 172


>gi|154509184|ref|ZP_02044826.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798818|gb|EDN81238.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC
           17982]
          Length = 550

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 6/167 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGL +  D I EIGAV + D +  +  F   + P  R   P    L GIT  
Sbjct: 29  WVVVDLETTGLGAGAD-ITEIGAVRIRDGAVVDE-FSSLVKP-SRPIPPFITSLTGITPA 85

Query: 69  FLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            + D    +S+   F ++       +   +AHNA FDVGF+    +   +       +  
Sbjct: 86  MVADAAPIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPRVRIVDT 145

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                         +            +   +H AL D+   +++ +
Sbjct: 146 LALARLALPRPLVRNHKLGTVASYFGTATVPEHRALGDARATAEILL 192


>gi|94989303|ref|YP_597404.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS9429]
 gi|94993192|ref|YP_601291.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS2096]
 gi|123257711|sp|Q1J9R4|DPO3_STRPB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123382486|sp|Q1JJW3|DPO3_STRPC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94542811|gb|ABF32860.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS9429]
 gi|94546700|gb|ABF36747.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS2096]
          Length = 1465

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+      ++   F DF  +  +  +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLRDARE 592


>gi|1794167|dbj|BAA11217.1| unnamed protein product [Vibrio parahaemolyticus]
          Length = 234

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 1/168 (0%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG + + DR+I IG VE+ +   + N    VF+              H   +  
Sbjct: 50  VLDFETTGFNPEVDRVISIGWVEIRNSNIRLNSARHVFINHAIDICHESVKVHHIRPETL 109

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                S  + F++  D    +         +        +++  N            +  
Sbjct: 110 HVSGISEQAAFTQLLDVIAGKILVAHGCIMEQRFLEQYIKMKYQNLKLPLIWLDTLKIEQ 169

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            R +   +R+D      R  + +     H AL D+   +++Y+  +  
Sbjct: 170 YRTQLRPTRSDWRLSSIRKELNLPTYQAHNALNDAIATAELYLAQINC 217


>gi|221201212|ref|ZP_03574252.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
 gi|221179062|gb|EEE11469.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
          Length = 398

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 8/165 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG      RI EIG VE+     +  T+   + P G+   P   +L GI+D  
Sbjct: 39  VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 95

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+ +    ++  +     ++AHNA FD GF+ AE +R                 
Sbjct: 96  VRDAPSFAELAPALFERLDG--KLFVAHNASFDRGFLRAEFERAGFAFNPDVLCT-VRLS 152

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  SR+ L++L  R+G+     ++H AL D+ LL   +  +
Sbjct: 153 RALFPRESRHGLDALIARHGLV--PAARHRALADADLLWQFWRHL 195


>gi|221206334|ref|ZP_03579347.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
 gi|221173643|gb|EEE06077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
          Length = 375

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 8/165 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG      RI EIG VE+     +  T+   + P G+   P   +L GI+D  
Sbjct: 16  VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+ +    ++  +     ++AHNA FD GF+ AE +R                 
Sbjct: 73  VRDAPSFAELAPALFERLDG--KLFVAHNASFDRGFLRAEFERAGFAFNPDVLCT-VRLS 129

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  SR+ L++L  R+G+     ++H AL D+ LL   +  +
Sbjct: 130 RALFPRESRHGLDALIARHGLV--PAARHRALADADLLWQFWRHL 172


>gi|221213616|ref|ZP_03586590.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
 gi|221166405|gb|EED98877.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
          Length = 375

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 8/165 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG      RI EIG VE+     +  T+   + P G+   P   +L GI+D  
Sbjct: 16  VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+ +    ++  +     ++AHNA FD GF+ AE +R                 
Sbjct: 73  VRDAPSFAELAPALFERLDG--KLFVAHNASFDRGFLRAEFERAGFAFNPDVLCT-VRLS 129

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  SR+ L++L  R+G+     ++H AL D+ LL   +  +
Sbjct: 130 RALFPRESRHGLDALIARHGLV--PAARHRALADADLLWQFWRHL 172


>gi|189349710|ref|YP_001945338.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
 gi|189333732|dbj|BAG42802.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 375

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 8/165 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG      RI EIG VE+     +  T+   + P G+   P   +L GI+D  
Sbjct: 16  VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+ +    ++  +     ++AHNA FD GF+ AE +R                 
Sbjct: 73  VRDAPSFAELAPALFERLDG--KLFVAHNASFDRGFLRAEFERAGFAFNPDVLCT-VRLS 129

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  SR+ L++L  R+G+     ++H AL D+ LL   +  +
Sbjct: 130 RALFPRESRHGLDALIARHGLV--PAARHRALADADLLWQFWRHL 172


>gi|189485715|ref|YP_001956656.1| DNA polymerase III epsilon subunit [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287674|dbj|BAG14195.1| DNA polymerase III epsilon subunit [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 198

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  DIETTGLD  K   I+EI  +++    +    ++  + P G     E  K+H I D+
Sbjct: 19  VFLDIETTGLDPEKGANIVEIAMLKVCGGIE--ERYESLVNP-GLPIPSECSKIHAIYDD 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
            +K+ PSF  I    + F    ++  + HNA FD
Sbjct: 76  MIKNSPSFDEIAGNVFSFI--GHSVVVCHNAPFD 107


>gi|161525562|ref|YP_001580574.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
           17616]
 gi|160342991|gb|ABX16077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 398

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 8/165 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG      RI EIG VE+     +  T+   + P G+   P   +L GI+D  
Sbjct: 39  VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 95

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+ +    ++  +     ++AHNA FD GF+ AE +R                 
Sbjct: 96  VRDAPSFAELAPALFERLDG--KLFVAHNASFDRGFLRAEFERAGFAFNPDVLCT-VRLS 152

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  SR+ L++L  R+G+     ++H AL D+ LL   +  +
Sbjct: 153 RALFPRESRHGLDALIARHGLV--PAARHRALADADLLWQFWRHL 195


>gi|120436594|ref|YP_862280.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803]
 gi|117578744|emb|CAL67213.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803]
          Length = 258

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG +   DRI+EI  +++  + +K + T+   + P  R+   E + +HGIT+E 
Sbjct: 11  FFDLETTGTNISKDRIVEIAVLKVFPNGNKESHTW--LVNPE-REIPAEVIAIHGITNEK 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK 100
           + ++P+F  +  +  D     +      N  
Sbjct: 68  VANEPTFKELAQKIHDLIKGCDLGGYNSNRF 98


>gi|306826600|ref|ZP_07459906.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782]
 gi|304431208|gb|EFM34211.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782]
          Length = 1465

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+      ++   F DF  +  +  +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLRDARE 592


>gi|126435878|ref|YP_001071569.1| hypothetical protein Mjls_3300 [Mycobacterium sp. JLS]
 gi|126235678|gb|ABN99078.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS]
          Length = 630

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 7/172 (4%)

Query: 9   KIVFDIETTGLDSKN---DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            +V D+ETTG  +     D I EIGAV++             + P GR   P+ + L GI
Sbjct: 30  FVVVDLETTGGRATGERPDAITEIGAVKVRGGEVLGE-LATLVDP-GRAIPPQIVSLTGI 87

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   +   P   S+   F +    + +  +AHNA FD+GF+ A  ++       P  +  
Sbjct: 88  TTAMVCAAPRIESVLPAFLE--FARGSVLVAHNAGFDIGFLRAAAEQCGLTWPRPPVLCT 145

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                R         +                H AL D+    DV   ++  
Sbjct: 146 VKLARRVLTRDEAPSVRLSALAQLFRAKTTPTHRALDDARATVDVLHGLIER 197


>gi|108800255|ref|YP_640452.1| hypothetical protein Mmcs_3289 [Mycobacterium sp. MCS]
 gi|119869383|ref|YP_939335.1| hypothetical protein Mkms_3351 [Mycobacterium sp. KMS]
 gi|108770674|gb|ABG09396.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
 gi|119695472|gb|ABL92545.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
          Length = 630

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 7/172 (4%)

Query: 9   KIVFDIETTGLDSKN---DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            +V D+ETTG  +     D I EIGAV++             + P GR   P+ + L GI
Sbjct: 30  FVVVDLETTGGRATGERPDAITEIGAVKVRGGEVLGE-LATLVDP-GRAIPPQIVSLTGI 87

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   +   P   S+   F +    + +  +AHNA FD+GF+ A  ++       P  +  
Sbjct: 88  TTAMVCAAPRIESVLPAFLE--FARGSVLVAHNAGFDIGFLRAAAEQCALTWPRPPVLCT 145

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                R         +                H AL D+    DV   ++  
Sbjct: 146 VKLARRVLTRDEAPSVRLSALAQLFRAKTTPTHRALDDARATVDVLHGLIER 197


>gi|139474447|ref|YP_001129163.1| DNA polymerase III PolC [Streptococcus pyogenes str. Manfredo]
 gi|166217453|sp|A2RGI3|DPO3_STRPG RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|134272694|emb|CAM30965.1| DNA polymerase III PolC-type [Streptococcus pyogenes str. Manfredo]
          Length = 1465

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+      ++   F DF  +  +  +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLRDARE 592


>gi|256832848|ref|YP_003161575.1| DNA polymerase III, epsilon subunit [Jonesia denitrificans DSM
           20603]
 gi|256686379|gb|ACV09272.1| DNA polymerase III, epsilon subunit [Jonesia denitrificans DSM
           20603]
          Length = 298

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 5/141 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL S+NDR+IE+  V    +      ++  + P        A  +H I   
Sbjct: 4   YAVIDVETTGLSSRNDRVIELAVVHTDTHGTITGHWETLINPQRNLT---AQHIHHIHAS 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F+ I ++     +      +AHNA FD  F+ AEL R  K        + T++
Sbjct: 61  HIQHAPLFADIATDLLTLLDG--RVPVAHNAPFDARFLAAELHRTGKTLHQQHDFLCTMN 118

Query: 129 IARRKHPSSRNDLNSLCKRYG 149
           ++RR  P     L        
Sbjct: 119 LSRRYLPGVGKPLADCLAATN 139


>gi|150016887|ref|YP_001309141.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903352|gb|ABR34185.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
          Length = 976

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             I  DIETTGLD     IIEIGAV++ +   T  T+   + P GR           + +
Sbjct: 11  NVIYLDIETTGLDETCSEIIEIGAVKVKNGVIT--TYNTLIRPRGRVPISIYSLCSDLKE 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L    S +SI  E  +F  +        N +                P   + I+D++
Sbjct: 69  ADLLSARSLNSIKQEVLEFLEDLPLICHNGNFER--------KFLSFYIPEIKNTIMDSM 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            +A    P  +    +   +    ++    H  L DS     V   +++  
Sbjct: 121 ELAIILEPWRKEYNLNSLIKEITNLNKDELHRGLSDSIDTLKVVNSLLLRQ 171


>gi|262375958|ref|ZP_06069189.1| ribonuclease T [Acinetobacter lwoffii SH145]
 gi|262309052|gb|EEY90184.1| ribonuclease T [Acinetobacter lwoffii SH145]
          Length = 219

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 67/197 (34%), Gaps = 16/197 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54
           +V D+ET G +++ D ++EI A+ ++          + +   + P               
Sbjct: 23  VVVDVETAGFNAQTDALLEIAAIPIVYNEEGQFVPGQAYHAHINPFEGANLDRRSLEFIG 82

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P       + ++            +E     N  +A  + HNA FD+GF+ A + R  
Sbjct: 83  IDPSNPMRIAMAEDEKTALKRIFKSVNEVRRQQNCTHAVLVGHNAHFDLGFLQAAIARTG 142

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +P                    + +  C + GI    +  H AL D+   ++++  
Sbjct: 143 TKNQNPFHSFSVFDTVTLSAVMFGQTVLAKSCIQAGIEFDGKEAHSALYDTQKTAELFCY 202

Query: 174 MMVGGSQINFGFKTNED 190
           ++   +         + 
Sbjct: 203 ILNKLAPHLLDTLVADQ 219


>gi|224826335|ref|ZP_03699437.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224601436|gb|EEG07617.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 476

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 5/128 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTG     DRI EIG + +         ++  + P G+   P    + GI+D  +
Sbjct: 9   IVDLETTGGHITRDRITEIGILLIDGERI--ERYETLVNP-GQPIPPFIENMTGISDAMV 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + P F+++     +         +AHNA+FD GF+  E +R              LS  
Sbjct: 66  AEAPPFAALVETLLEKLQG--RLLLAHNARFDYGFLKNEFKRAGHVFQSEVLCTVKLSRR 123

Query: 131 RRKHPSSR 138
                   
Sbjct: 124 LYPQHFKH 131


>gi|315179445|gb|ADT86359.1| DNA polymerase III, epsilon chain [Vibrio furnissii NCTC 11218]
          Length = 224

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 7/168 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            DIET+GLD+++D I+ IG V +++            + P+G+ +  + +  H +     
Sbjct: 37  LDIETSGLDAEHDHIVSIGWVPIVNQVIRLAEARYFLITPSGQDDPQQVVLHHIMPQMQR 96

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P  +      +     +         +        +       P+     +      
Sbjct: 97  QGIP-LAQAIELLFTQLKGKVLLAHGSVVERQFIHHFMQQHGWPDLPIVWLDTLKIEQAY 155

Query: 131 RRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +  P +    N+        R    +     H AL D+   +++Y+ 
Sbjct: 156 AQYAPYNTPHSNANDWRLSTVRKRYHLPAYQAHHALSDAIATAELYLA 203


>gi|326773509|ref|ZP_08232792.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
 gi|326636739|gb|EGE37642.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
          Length = 465

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 68/205 (33%), Gaps = 4/205 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       + EIGAV++         F   + P G     +   L GIT+ 
Sbjct: 22  FVVVDLETTGGAPGARSVTEIGAVKVRGGQVLAE-FSTLVNP-GVAIPAQITMLTGITNA 79

Query: 69  FLKDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +   P   +    F D+      +   +AHNA+FDVG +      +  +  +P  +   
Sbjct: 80  MVAGAPGVRTCVEAFLDWADLLADDVILVAHNARFDVGHLRGAAAAVGLEWPEPRVLDTL 139

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
               R    S   +         +    R  H AL D+    DV    +   + +     
Sbjct: 140 ALARRAWTRSEVPNHKLGTLAAFVGSQTRPTHRALDDARATVDVLHAALEVMAPLGVTHL 199

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211
            +               S L    P
Sbjct: 200 EDLSTASDPVPARRRAKSRLADALP 224


>gi|329901259|ref|ZP_08272784.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549191|gb|EGF33783.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 462

 Score = 63.4 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 8/164 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R    D+ETTG  +  DRI E+G VE+ +     R +   + P+ R        L GI++
Sbjct: 9   RLAFVDLETTGATAVIDRITEVGIVEVDEDGV--RHWSSLVNPH-RHIPEFIEGLTGISN 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P F  + +E           ++AHNA+FD GF+  E +R+  D      ++ T+
Sbjct: 66  AMVADAPGFDELAAEIHQRLEG--RIFLAHNARFDHGFLKNEFKRVGID--FRPTVLCTV 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            ++R+ +P                     +H AL D+ L+   +
Sbjct: 122 KLSRKLYPEFAKHNLDTLAERHQL-QVTERHRALGDAQLIWQFW 164


>gi|290963218|ref|YP_003494400.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260652744|emb|CBG75877.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 215

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCP 50
            V D+ETTGLD + D II +GAV + +       +F   + P
Sbjct: 23 YCVIDLETTGLDLRRDEIISVGAVPVREGRIDLGDSFYSLVRP 65


>gi|332140721|ref|YP_004426459.1| ribonuclease T [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550743|gb|AEA97461.1| ribonuclease T [Alteromonas macleodii str. 'Deep ecotype']
          Length = 210

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 74/193 (38%), Gaps = 13/193 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++  D ++E+ A  V++ D      + TF   + P  G    P AL+ +G
Sbjct: 18  VVIDVETAGFNAGTDALLELAAVTVKMDDDGILHPDETFHYHIDPFEGANLEPAALEFNG 77

Query: 65  ITDE--------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +       Q +  +AHNA FD  F+NA ++R N  
Sbjct: 78  IDPNCALRGAIEESEAMKDLCKGIRKAQKNAGCQRSVIVAHNATFDQSFVNAAIERCNIK 137

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + +       +  L   C+  GI       H AL D+   ++++  M+ 
Sbjct: 138 RTPFHPFVSFDTTSLAGLALGQTVLVKACRAAGIAFDQSEAHSALYDAQKTTELFCFMVN 197

Query: 177 GGSQINFGFKTNE 189
               +      N+
Sbjct: 198 RYKALGGWPVEND 210


>gi|312891424|ref|ZP_07750941.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter
           paludis DSM 18603]
 gi|311296118|gb|EFQ73270.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter
           paludis DSM 18603]
          Length = 380

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 7/185 (3%)

Query: 1   MIRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           +++ N  R + F D+ETTG +   DRI+EI  ++L     T+      + P     S E+
Sbjct: 20  IMKLNLKRPLAFFDLETTGTNIGVDRIVEISVIKLNPDG-TDDVKTWKINPE-MPISIES 77

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGI +E L D P F +  +E  DF  + +      N       +   L+  +   ++
Sbjct: 78  SMIHGIYEEHLIDAPVFKTAAAEISDFIADSDLAGYNSNRFDIPMLMEEFLRVGHPFDIE 137

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               ID  +I  +              ++       + H A  D+    +V +  +    
Sbjct: 138 QRHFIDVQNIFHQ----MEQRTLRAAYQFYCGKDIINAHSAEADTRATMEVLLAQVAKYE 193

Query: 180 QINFG 184
            + F 
Sbjct: 194 GVEFE 198


>gi|313679706|ref|YP_004057445.1| DNA-directed DNA polymerase [Oceanithermus profundus DSM 14977]
 gi|313152421|gb|ADR36272.1| DNA-directed DNA polymerase [Oceanithermus profundus DSM 14977]
          Length = 252

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 6/165 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL    + IIEI  + +         F   + P G    P   +L GI+   
Sbjct: 79  VVLDLETTGLSPSENEIIEIALMRVEPGRV--ERFARLVNP-GSPIPPFITRLTGISSAD 135

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P   +   E   +     A  +  NA FD+GF+           +    I      
Sbjct: 136 VADAPDVYTALEEALPYLEG--AVLVIQNAPFDLGFLR-PRACRLGVKIHNEVIDTVQWA 192

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            R      R  L+ L + + ++I   ++H AL D      V  +M
Sbjct: 193 RRALPRMRRRGLDHLIRAFEVSIETGARHRALGDVEATWTVAREM 237


>gi|156303079|ref|XP_001617467.1| hypothetical protein NEMVEDRAFT_v1g226058 [Nematostella vectensis]
 gi|156193984|gb|EDO25367.1| predicted protein [Nematostella vectensis]
          Length = 256

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 77/204 (37%), Gaps = 8/204 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG+D   DRI+EI   ++  + +K ++T+   + P      P+   +HGITDE 
Sbjct: 11  FFDLETTGIDVARDRIVEISVFKVFPNGNKESKTW--LVNP-TIPIPPQTTAVHGITDEK 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P+F+ +    ++   + +      +           L+      +     +D  +I
Sbjct: 68  VANEPTFNELAPHVYNMIKDSDLAGFNSDRFDIPLLAEELLRAGVDFDMKNRVSVDVQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          S   ++    S  + H A  D+    ++    +     +    K   
Sbjct: 128 FHK----KEERTLSAAYKFYCNQSLENAHSAEADTMATYEILKAQLDRYEDLENDMKLLS 183

Query: 190 DRFFKEEKKTVPNISLLKRDKPLF 213
           +   +++         L ++    
Sbjct: 184 EYTTRKKTVDFAGFITLNKEGKEV 207


>gi|163755942|ref|ZP_02163059.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1]
 gi|161324113|gb|EDP95445.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1]
          Length = 257

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 80/222 (36%), Gaps = 19/222 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG++   DRI+EI  +++  + +K ++T+   + P       E  ++HGITD+ 
Sbjct: 11  FFDLETTGVEVAKDRIVEIAILKVYPNGNKESKTW--LVNPE-MPIPAETSEIHGITDDK 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P+F  +  E ++   + +      +            + + +  +D          
Sbjct: 68  VANEPTFKELSKEIYNMIKDSDLAGYNSDRFDI----PLLAEELLRADIDFDMKNKVSID 123

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
            +           S   ++         HGA  D++   +V    +    ++    K   
Sbjct: 124 VQTIFHKMEKRTLSAAYKFYCGKELEGAHGAEADTNATYEVLKSQLDRYDELENDVKKLS 183

Query: 190 D-----------RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           +            F   +K      S  K       ++  EE
Sbjct: 184 EFTTRKKTADFAGFIIFDKDGEEIFSFGKHKGKKVAKVLDEE 225


>gi|94312850|ref|YP_586059.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34]
 gi|93356702|gb|ABF10790.1| DNA polymerase III, epsilon subunit [Cupriavidus metallidurans
           CH34]
          Length = 530

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 6/105 (5%)

Query: 8   RKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IVF D+ETTG D++ DRI EIG VE+       + +   + P      P    L GIT
Sbjct: 33  RPIVFVDLETTGADAQRDRITEIGVVEVGPDGI--QEWDTLVDP-LTSIPPFVQGLTGIT 89

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           DE ++ +P+F+ I     +        ++AHNA+FD GF+  E +
Sbjct: 90  DEMVRGQPTFALIAEALAEKLQG--RLFVAHNARFDYGFLKNEFR 132


>gi|257439598|ref|ZP_05615353.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
           A2-165]
 gi|257197965|gb|EEU96249.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
           A2-165]
          Length = 1417

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 80/221 (36%), Gaps = 10/221 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD ETTGLD   + + EIGAV + +       F  F+ P G+  +P+  +L GIT+E +
Sbjct: 399 VFDTETTGLDPGVEYLTEIGAVIVRNGEVV-EEFDTFVKP-GKPITPKITELTGITNEMV 456

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P        F           +AHNA            + +    +P+ I       
Sbjct: 457 ADAPGEKEALEAFLR--FADGRILVAHNAHAFDIRFLKAAAKRSGISFEPTYIDTLTMAQ 514

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ----INFGFK 186
                       ++ K   +       H A  DS  L  ++  M+   ++       G  
Sbjct: 515 AMYPGLHNYKQGTINKHLELP--SYEAHRACEDSAALGRIFCVMLSDLAEKEVTTVEGIN 572

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
           T      +  KK   ++ +L +++     + K   + H   
Sbjct: 573 TGLGGNREVLKKKYFHLIILVKNQMGLKNLYKIVSEAHVNY 613


>gi|227431886|ref|ZP_03913909.1| DNA-directed DNA polymerase III epsilon subunit [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352353|gb|EEJ42556.1| DNA-directed DNA polymerase III epsilon subunit [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 797

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 3/167 (1%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+ETTG    K  RII+IG   +         F+ F+ P G+    +  +L  I+ 
Sbjct: 7   FVVVDLETTGHSVKKGGRIIQIGMTFIKKRQIV-DHFESFVNP-GQLIDRQIQQLTHISQ 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +++ P F  I     +            N  +       E              +   
Sbjct: 65  KDVQNAPYFEEIAPLLQNLLQNTVIIAHNVNFDYPYLNDEFERTGFQLLKSAAIDTVQLA 124

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            I     P  R    +      +  +HR+   A   + L    + K+
Sbjct: 125 QILFPMAPGYRLLDLTTYLNITLKNAHRANADAHATALLFLKFWKKL 171


>gi|225017584|ref|ZP_03706776.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum
           DSM 5476]
 gi|224949644|gb|EEG30853.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum
           DSM 5476]
          Length = 865

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 78/212 (36%), Gaps = 10/212 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +VFD+E+TG D+ +D II+I AV + +  +  R+F+  L P          +      
Sbjct: 498 NVVVFDVESTGTDTSSDEIIQIAAVRIDETGRVLRSFEQLLHP---SKPVGQSEAVHHFS 554

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L  +                + A  + HN  FD+  + +EL R+   P +     DTL
Sbjct: 555 DALLAERGGEPPQVLAEFCSFVRGAVVVGHNVGFDLTILASELSRLGLPPAEYEEYYDTL 614

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            +ARR +P   N       +  +    +S H A+ D     DV + +             
Sbjct: 615 DLARRFYPDLPNHKLETLSKL-LDTEVKSSHDAMDDILATKDVLLHLTAHKLLPTL---- 669

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
              +     ++       L        R ++E
Sbjct: 670 --QQRKAVYERYQGRFDKLSSTIESLRRASEE 699


>gi|332522391|ref|ZP_08398643.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332313655|gb|EGJ26640.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 1466

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 428 YVVFDVETTGLSAINNDLIQIAASKMYKGNII-EQFDEFINP-GHPLSSFTTELTGITDN 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L    +   +   F  F  +  A  +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 486 HLIGAKTLLQVLEAFQAFCQD--AILVAHNASFDVGFMNANYERHHLPLIKQPVIDTLEF 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 544 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKEARE 593


>gi|301058175|ref|ZP_07199227.1| exonuclease, DNA polymerase III, epsilon subunit family protein
          [delta proteobacterium NaphS2]
 gi|300447807|gb|EFK11520.1| exonuclease, DNA polymerase III, epsilon subunit family protein
          [delta proteobacterium NaphS2]
          Length = 233

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSP 57
           +VFD E TGL  + D II IGAV + +       TF   + P G+  +P
Sbjct: 42 FVVFDTELTGLKQRRDEIIAIGAVRIKNARICFEDTFYALIKPQGKLYTP 91


>gi|260767723|ref|ZP_05876658.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260617232|gb|EEX42416.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
          Length = 222

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 7/168 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            DIET+GLD+++D I+ IG V +++            + P+G+ +  + +  H +     
Sbjct: 35  LDIETSGLDAEHDHIVSIGWVPIVNQVIRLAEARYFLITPSGQNDPQQVVLHHIMPQMQR 94

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P  +      +     +         +        +       P+     +      
Sbjct: 95  QGIP-LAQAIELLFTQLKGKVLLAHGSVVERQFIHHFMQQHGWPDLPIVWLDTLKIEQAY 153

Query: 131 RRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +  P +    N+        R    +     H AL D+   +++Y+ 
Sbjct: 154 AQYAPYNMPHSNANDWRLSTVRKRYHLPAYQAHHALSDAIATAELYLA 201


>gi|171315543|ref|ZP_02904779.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171099380|gb|EDT44118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 375

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  S   RI EIG VE+     +  T+   + P G+   P   +L GI+DE 
Sbjct: 16  VFVDLETTGGSSAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQSIPPFIQQLTGISDEM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+S+    ++  +     ++AHNA FD GF+ AE  R                 
Sbjct: 73  VRDAPSFASLAPTLFERLDG--KLFVAHNASFDRGFLRAEFDRAGIAFNPDVLCT-VRLS 129

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  +R+ L++L +R+G+     ++H AL D+ LL   + ++
Sbjct: 130 RALFPREARHGLDALIERHGLV--PAARHRALADADLLWQFWRQL 172


>gi|325286607|ref|YP_004262397.1| DNA polymerase III subunit alpha [Cellulophaga lytica DSM 7489]
 gi|324322061|gb|ADY29526.1| DNA polymerase III, alpha subunit [Cellulophaga lytica DSM 7489]
          Length = 1479

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 74/250 (29%), Gaps = 31/250 (12%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R I+I      D           + P+G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPYTDTDNWPRCIQIAWQLHDDMGNVIEHQDYLVKPDGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A K+HGI+    +      +   E ++   E+    +  N  FD+  + AE  R+  +  
Sbjct: 62  AEKIHGISTALAEQDGVPLAEVLEKFNTALEKTKFVVGQNVGFDLNIMGAEFHRLQVENQ 121

Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                +                           +   ++         H A  D    + 
Sbjct: 122 LQELPVLDTCTEHTASLCQIPGGRGGKFKLPTLTELHQFLFGEPFGEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
            +++++              D F    +     I L+        + +           +
Sbjct: 182 CFLELIRKQQYTAEQLDVQPDYFKNFSEANPKPIELIGLKHINLKKAS-----------K 230

Query: 230 TLGKNAIWDR 239
            +  +A+W +
Sbjct: 231 KIA-DALWAK 239


>gi|108759005|ref|YP_633932.1| exonuclease [Myxococcus xanthus DK 1622]
 gi|108462885|gb|ABF88070.1| exonuclease [Myxococcus xanthus DK 1622]
          Length = 988

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 4/119 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D+ETTGLD + D +IE+G +   +  +  R F        R       +L G+TD
Sbjct: 10  RHVFLDLETTGLDPRVDEVIELGCIFFENGREVER-FARLY-SASRPLPLTIRRLTGLTD 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             L+  P F +  +E  +  +       AHNA F+ GF+   L  I+   LD   ++  
Sbjct: 68  ADLEGHPRFGTDIAELREKLSGWTVV--AHNAPFEKGFLPDLLGPIHAPVLDSCELMHY 124


>gi|167586484|ref|ZP_02378872.1| DNA polymerase III, epsilon subunit [Burkholderia ubonensis Bu]
          Length = 375

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 8/165 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  S   RI EIG VE+     +  T+   + P G+   P   +L GI+D  
Sbjct: 16  VFVDLETTGGSSAEHRITEIGVVEIGPLGVS--TWTSLVNP-GQPIPPFIQQLTGISDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+S+    ++  +     ++AHNA FD GF+ AE +RI                
Sbjct: 73  VRDAPSFASLAPALFERLDG--KLFVAHNASFDRGFLRAEFERIGLAFNPDVLCT-VRLS 129

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  SR+ L++L +R+G+     ++H AL D+ LL   + ++
Sbjct: 130 RALFPRESRHGLDALIERHGLV--PSARHRALADADLLWQFWRQL 172


>gi|86140827|ref|ZP_01059386.1| DNA polymerase III, epsilon subunit [Leeuwenhoekiella blandensis
           MED217]
 gi|85832769|gb|EAQ51218.1| DNA polymerase III, epsilon subunit [Leeuwenhoekiella blandensis
           MED217]
          Length = 221

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 78/175 (44%), Gaps = 12/175 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +VFD ETTG +++ DR++ IGA+EL     + + +F++++          A+      
Sbjct: 35  RFVVFDTETTGTNAREDRMLSIGALELKGNKISLSSSFELYVKQEVFNEEAVAIHGILRE 94

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR---- 122
           +   K      ++ +         +A  + H+  FD+G IN  L+R+    L        
Sbjct: 95  NRKYKKVSEEEAVKAFLE---FIGDAILVGHHVGFDIGIINYALKRLGAPKLKNKFTDTG 151

Query: 123 --IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                T+ +     P+    L+ LC+   I      +H A+ D+++ +  ++K+M
Sbjct: 152 VLYKRTVHLVNITDPNKVYTLDDLCEELNIA--KTDRHKAMGDAYITALAFLKVM 204


>gi|329929369|ref|ZP_08283117.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Paenibacillus sp. HGF5]
 gi|328936456|gb|EGG32901.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Paenibacillus sp. HGF5]
          Length = 246

 Score = 63.0 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 7/172 (4%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTG + +  D I+  GA+ ++        TF + +  +G   SP   +L GIT 
Sbjct: 62  VVFDLETTGFNHQHGDEILSFGAIRVIGEQVIENETFHMIVN-SGAPVSPFIAELTGITQ 120

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +   P       +F  F        +AH A  D GF+NA L + +K  L    +   +
Sbjct: 121 QMVDAAPPLMEGLHDFMAFIGG--RVLVAHAAAHDRGFLNAALWKTSKVRLTHRLLDTMM 178

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              R         L+ L +  GI      +H AL D+ + + ++   M    
Sbjct: 179 LAQRLYPEQKDYSLDELLRSSGIP--VEGRHHALSDARMTARLWADYMKDIQ 228


>gi|261408383|ref|YP_003244624.1| hypothetical protein GYMC10_4596 [Paenibacillus sp. Y412MC10]
 gi|261284846|gb|ACX66817.1| DNA polymerase III, epsilon subunit [Paenibacillus sp. Y412MC10]
          Length = 246

 Score = 63.0 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 7/172 (4%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTG + +  D I+  GA+ ++        TF + +  +G   SP   +L GIT 
Sbjct: 62  VVFDLETTGFNHQHGDEILSFGAIRVIGEQVIENETFHMIVN-SGAPVSPFIAELTGITQ 120

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +   P       +F  F        +AH A  D GF+NA L + +K  L    +   +
Sbjct: 121 QMVDAAPPLMEGLHDFMAFIGG--RVLVAHAAAHDRGFLNAALWKTSKVRLTHRLLDTMM 178

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              R         L+ L +  GI      +H AL D+ + + ++   M    
Sbjct: 179 LAQRLYPEQKDYSLDELLRSSGIP--VEGRHHALSDARMTARLWADYMKDIQ 228


>gi|21673865|ref|NP_661930.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS]
 gi|21647000|gb|AAM72272.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS]
          Length = 232

 Score = 63.0 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 66/183 (36%), Gaps = 8/183 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPN-----GRKNSPEALK 61
           R ++FD ET+G D   DRI+ IGAV +   +     +F+V L           +    LK
Sbjct: 44  RFVIFDTETSGFDLVKDRILSIGAVSMKGSTIDIADSFEVLLRQEAIGGKDAVSVHGILK 103

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
                     +       +              IA   +        +L     D    +
Sbjct: 104 RDLTQGMEEGEAVCRFLDYLGNGVIVAHHADFDIAMVNRVLSQRYGIKLLNEALDTASFA 163

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           + ++        H S    L++LC RYG  I    +H +  D++L + ++ +++  G + 
Sbjct: 164 KRLEKGPYYNLAHKSGEYRLDNLCARYG--ICLYDRHTSAGDAYLTAQLFQRLLAVGRKA 221

Query: 182 NFG 184
              
Sbjct: 222 GID 224


>gi|313618186|gb|EFR90268.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           innocua FSL S4-378]
          Length = 931

 Score = 63.0 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M +  K R IV D+ETTG  + + DRII+  A  +    +   T+  FL P  +      
Sbjct: 1   MEQMKKKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYSTFLNPE-KPIPAFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
            +L GI+ + +K+ P F  +         +    ++AHN  FD  F+  E+
Sbjct: 59  QELTGISPKDVKNAPLFEDVAPIIASLLED--TIFVAHNVSFDWTFLEREM 107


>gi|227873963|ref|ZP_03992179.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268]
 gi|227840171|gb|EEJ50585.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268]
          Length = 178

 Score = 63.0 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 9/175 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R IVFD+ET   + KN+RI  IG   + +   + + F   + P         +KL GI+ 
Sbjct: 3   RFIVFDVET--PNRKNNRISAIGITVVEEGKIS-KEFYSLVNPETN-FDYFNVKLTGISK 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +KD P+F  ++ +    F++     +AHNA FD+  +   L     D    +R + T+
Sbjct: 59  ASVKDAPTFPELWQQIEPLFSDGM--LVAHNASFDMNVLKNCLLDYEIDWKPYARYLCTV 116

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            + R   P   + LN +C+ +G        H A  DSH  +++ ++ +  G+++ 
Sbjct: 117 KMGRSLFPDRSHKLNMVCEDFG---ISLQHHRADSDSHACAEILLRYLEAGAEVK 168


>gi|312865553|ref|ZP_07725780.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus downei F0415]
 gi|311099071|gb|EFQ57288.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus downei F0415]
          Length = 1468

 Score = 63.0 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +  ++ F  F+ P G   S     L GITD 
Sbjct: 430 YVVFDVETTGLSAVNNSLIQIAASKMHKGNIIDQ-FDEFINP-GHPLSQFTTDLTGITDN 487

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD      +  EF +F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 488 HLKDAKPLLQVLEEFQEFCQD--TVLVAHNATFDVGFMNANYERHDLPLISQPVIDTLEF 545

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ + + H   H A  D+     +    +    +
Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALDH--HHMANYDAEATGRLLFIFIKEARE 595


>gi|312960550|ref|ZP_07775056.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
 gi|311285076|gb|EFQ63651.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
          Length = 142

 Score = 63.0 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 7/127 (5%)

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G +
Sbjct: 12  HCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQT 71

Query: 180 QINFGFKTNEDRFFKEEKKTVP---NISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-- 234
            ++     ++     E     P         R      R +++++ EH   ++ + K+  
Sbjct: 72  SLSLAGNASDGSGSAEGSGNRPSEIRRLPADRKPTTIIRASEQDMAEHAARLEAIAKSAG 131

Query: 235 --AIWDR 239
             A+W +
Sbjct: 132 APALWTQ 138


>gi|296119762|ref|ZP_06838316.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295966916|gb|EFG80187.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 1149

 Score = 63.0 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M + NK    V D E TGL +  DRI+EIG V L +  +  +T+   + PN         
Sbjct: 1   MSQHNK--FAVVDFEATGLSAA-DRIVEIGVVLLDNNLEVEQTWDTLVQPNREVP---NS 54

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +H +T   L+  P+F  I ++F    + +     AHNA F+  F+  E  R+     + 
Sbjct: 55  FVHKLTTADLEKAPTFEGISAKFASLLDGRTVV--AHNASFEEHFMRQEFSRLGVLWPNY 112

Query: 121 SRII 124
              I
Sbjct: 113 GSWI 116


>gi|261369077|ref|ZP_05981960.1| putative DNA polymerase III, epsilon subunit [Subdoligranulum
           variabile DSM 15176]
 gi|282568762|gb|EFB74297.1| putative DNA polymerase III, epsilon subunit [Subdoligranulum
           variabile DSM 15176]
          Length = 318

 Score = 63.0 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 7/166 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIETTGLD   D I+++  +++            ++ P   ++ PEA +++ IT E 
Sbjct: 120 VSIDIETTGLDFNQDEILQVSILDIDTGEVL---LDSYVKPYFTEDWPEARRVNHITKEM 176

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE----WIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + P    +         +        +   +  F   +  +       + L       
Sbjct: 177 VCNAPYIYELLPRLNQVLAQVKTIVGYNFTGFDNGFLTRYGASFNDETIVEDLSNIFAAI 236

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               + +       +L++    +G      + H +L D    +  Y
Sbjct: 237 YGEFSPKHGDFKFKNLSTCADYFGYDWGEETAHNSLADCRATAFCY 282


>gi|261493343|ref|ZP_05989869.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261310987|gb|EEY12164.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 221

 Score = 63.0 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET GL+++ D ++E+ A+ +      Y   ++     + P  G   +PE+LK +G
Sbjct: 31  VVIDVETAGLNAQTDALLELAAITVKMDENGYLVEDQKCHFHIKPFEGANINPESLKFNG 90

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +             P    +          Q A  +AHNA FD GF+ A ++RIN  
Sbjct: 91  IDIDNPLRGAVAENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQGFLQAAVKRINAK 150

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I+      H AL D+   ++++  M+ 
Sbjct: 151 RDPFHPFAMFDTATLAGFMYGQTVLVKACQAAQISFDGHQAHCALYDTEKTTELFCAMVN 210

Query: 177 GGSQIN 182
               + 
Sbjct: 211 KLKDLG 216


>gi|217970248|ref|YP_002355482.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|217507575|gb|ACK54586.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 203

 Score = 63.0 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 6/103 (5%)

Query: 7   MRKI-VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M  + V D ETTGL   + DR  EI AV + D    +R +Q  +   G +       L G
Sbjct: 1   MEAVAVIDFETTGLSPAQGDRATEIAAVIVRDGRVVDR-YQSLMN-AGVRIPAHIESLTG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           I++  ++  P+ + +  E  DF         AHNA FD  F +
Sbjct: 59  ISNAMIRSAPTAAQVMREVADFIGGIPMV--AHNAAFDAKFWD 99


>gi|158313649|ref|YP_001506157.1| hypothetical protein Franean1_1813 [Frankia sp. EAN1pec]
 gi|158109054|gb|ABW11251.1| DNA polymerase III, epsilon subunit [Frankia sp. EAN1pec]
          Length = 603

 Score = 63.0 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 40/114 (35%), Gaps = 4/114 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       I EIGAV +             + P           L GIT  
Sbjct: 29  FVVVDLETTGGSPATSEITEIGAVRVRGGQILGEM-SSLVRP-SAPIPAFISVLTGITGA 86

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            +   P    +   F +    + A  +AHNA FD+GF+ A              
Sbjct: 87  MVATAPGIGEVVPTFLE--FARGAVLVAHNAPFDLGFLRAAATACGYPAPAWEH 138


>gi|283456242|ref|YP_003360806.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
 gi|283102876|gb|ADB09982.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
          Length = 317

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 9/175 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTGL+  + DR IEIG V +          +  +          A  +H I+ 
Sbjct: 6   YAVVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLIR---VHRDIGAQWIHHISA 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L   P F  I  E  D        ++AHN  FD  F+ +E +      +  +      
Sbjct: 63  VELIHAPEFEGIARELRDLLAG--RVFVAHNVAFDSKFLLSEYR-RLGTDIPVNSHTMLC 119

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++   +       L   C+ +GI   +   H AL D+H  + +  ++M    + +
Sbjct: 120 TMKLSRSLIGVGSLADCCREFGID--NEDAHSALSDAHATALLLGRLMDADPEWS 172


>gi|255010437|ref|ZP_05282563.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis
           3_1_12]
 gi|313148241|ref|ZP_07810434.1| DNA Pol III epsilon chain [Bacteroides fragilis 3_1_12]
 gi|313137008|gb|EFR54368.1| DNA Pol III epsilon chain [Bacteroides fragilis 3_1_12]
          Length = 257

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 65/172 (37%), Gaps = 8/172 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +  +DRI+EI  +++  + ++ ++T +  + P       E+  +HGI D 
Sbjct: 10  VFFDLETTGTNINSDRIVEICYLKVYPNGNEESKTLR--INPE-MPIPAESSAVHGIFDA 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +     +     +      N           L+      +   + +D   
Sbjct: 67  DVADCPTFKEVAKSIANDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMSKRKFVDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           I  +          S   ++    +    H A  D+    +V +  +    +
Sbjct: 127 IFHK----MEQRTLSAAYKFYCGRNLEDAHTAEADTRATYEVLMAQLDRYPE 174


>gi|126664190|ref|ZP_01735182.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium
          BAL38]
 gi|126623722|gb|EAZ94418.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium
          BAL38]
          Length = 202

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 3  RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          +  K R +VFD ETTGLD K+DRI+ IGAV + +    
Sbjct: 28 QNKKKRYVVFDCETTGLDYKSDRILSIGAVAIENNQII 65


>gi|290579638|ref|YP_003484030.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025]
 gi|254996537|dbj|BAH87138.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025]
          Length = 1470

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 13/211 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S     L GITD+
Sbjct: 430 YVVFDVETTGLSAINNDLIQIAASKMHKGNIV-EQFDEFIDP-GHPLSQFTTDLTGITDQ 487

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +  EF  F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 488 HVKGAKPILQVLQEFQSFCQD--TVLVAHNATFDVGFMNANYERHDLPKITQPVIDTLEF 545

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-------I 181
                    R+ L  L KR+ +++ H   H A  D+     +    +    +       +
Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEAKEKHGVNNLL 603

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
           +   K  ++  +K+ +     I +L +    
Sbjct: 604 DLNTKIVDNNSYKKARVKHATIYVLNQKGLK 634


>gi|297571327|ref|YP_003697101.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931674|gb|ADH92482.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 597

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 63/175 (36%), Gaps = 3/175 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       + EIGAV++   +     F   + P G        +L GIT  
Sbjct: 47  FLVVDVETTGEKPGLHSLTEIGAVKVRGGTVIGE-FGSLVNP-GVPIPAFITRLTGITTG 104

Query: 69  FLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +   PS   +   F +F   + +  ++AHNA FD+G +      +     +   I    
Sbjct: 105 MVATAPSLGEVLVSFIEFVGGDPDLIFVAHNAPFDMGQLRGAASALGLAFPNRKVIDTVK 164

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
              R        +         +  +    H AL D+    DV   ++     + 
Sbjct: 165 LSRRVFMKDEVPNHKLSTLARFVNATISPSHRALDDARATVDVLHAILGRLGSLG 219


>gi|153820610|ref|ZP_01973277.1| DNA polymerase III epsilon subunit [Vibrio cholerae NCTC 8457]
 gi|126508846|gb|EAZ71440.1| DNA polymerase III epsilon subunit [Vibrio cholerae NCTC 8457]
          Length = 136

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 5/121 (4%)

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G +
Sbjct: 18  FCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQT 77

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIW 237
            + F   T        E          +R        + +EL  H   +  + K+   +W
Sbjct: 78  SLQFSSVTQNSGELSAESLKRAR---SERKALKVLAASADELQAHQDRLDIVAKSGTCLW 134

Query: 238 D 238
            
Sbjct: 135 R 135


>gi|125549801|gb|EAY95623.1| hypothetical protein OsI_17478 [Oryza sativa Indica Group]
          Length = 260

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 75/201 (37%), Gaps = 16/201 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTG   K+ RI+E    +L      N TF+  + P  R        L  I  + +
Sbjct: 64  VFDLETTGYFHKDHRIVEFALCDLSGGK--NSTFETLVNPE-RTVPDYVQHLIKIGTDLV 120

Query: 71  KDK--PSFSSIFSEFWDFFNEQNAE-----WIAHN-----AKFDVGFINAELQRINKDPL 118
                P FS +      F   + A      W+AHN     A+F     +     +  D L
Sbjct: 121 CRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPLPADWL 180

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               ++    + + +    R  L +L + YGI       H A+ D  +LS V+ KM    
Sbjct: 181 FFDTLLLAKKMVKAEGKKRRTSLEALREHYGIVSH-DDAHRAMRDVMILSQVFQKMTFDL 239

Query: 179 SQINFGFKTNEDRFFKEEKKT 199
              N        +  +  K +
Sbjct: 240 KLTNEELINEAMKASEFSKIS 260


>gi|326335188|ref|ZP_08201385.1| exonuclease [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692718|gb|EGD34660.1| exonuclease [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 273

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 78/233 (33%), Gaps = 21/233 (9%)

Query: 2   IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           +  N  R I  FD+ETTG D   DRI+EI  +++  + S+ ++T+   + P        +
Sbjct: 17  MELNLTRPICFFDLETTGTDVSKDRIVEISILKVFPNGSRESKTW--LVNP-TIPIPAAS 73

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGI+D+ +   P+F  +  +  +   + +      +           L+      L 
Sbjct: 74  TDIHGISDKMVAQAPTFKELAKQIHNLIKDSDLAGYNSDRFDIPLLAEELLRAGVDFDLK 133

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               +D  +I  +          S   ++    S  + H A  D+    ++    +   S
Sbjct: 134 NRVTVDVQTIFHK----MEQRTLSAAYKFYCKKSLDNAHSAQADTDATYEILKAQLDCYS 189

Query: 180 QINFGFK------------TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
                               +   F     K     +  K        I +EE
Sbjct: 190 DTLPNDVKQLSDFTTRKQIADFAGFIAYNDKGEEIFTFGKHKGRKVEEILEEE 242


>gi|255690064|ref|ZP_05413739.1| exonuclease [Bacteroides finegoldii DSM 17565]
 gi|260624341|gb|EEX47212.1| exonuclease [Bacteroides finegoldii DSM 17565]
          Length = 259

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 8/191 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +   DRI+EI  +++  + ++ ++T +  + P        +  +HGI D 
Sbjct: 10  VFFDLETTGTNINTDRIVEICYLKVYPNGNEESKTLR--INPEMH-IPEASSAVHGIYDA 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +           +      N           L+      +   + +D   
Sbjct: 67  DVADCPTFKEVAKSIARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMTKRKFVDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I  +          S   ++    +    H A  D+    +V    +    ++       
Sbjct: 127 IFHK----MEQRTLSAAYKFYCEKNLEDAHTAEADTRATYEVLKAQLDRYDELQNDIAFL 182

Query: 189 EDRFFKEEKKT 199
            D     +   
Sbjct: 183 ADYSSYSKNVD 193


>gi|308234071|ref|ZP_07664808.1| DNA polymerase III, epsilon subunit [Atopobium vaginae DSM 15829]
          Length = 1008

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 7/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL  KND++ +I AV+L +       F  F+ P  R       KL  I    
Sbjct: 51  VALDTETTGLSHKNDQLTQIAAVKLEEG-SVADEFTTFVNP-SRPIPHNIEKLTNIYSVD 108

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+  +  +   DF        +AHNA FD  FI A              +  +   
Sbjct: 109 VEHAPTPQTAVARLADFVEL--DPILAHNASFDRAFIEAAQNDTCVSDTWIDTLALSRIA 166

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                  + + L  L   +G        +        +    + 
Sbjct: 167 FPA---LTSHKLQDLAYIFGCESVTHRANDDCTALAGVWHYILA 207


>gi|328943468|ref|ZP_08240933.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829]
 gi|327491437|gb|EGF23211.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829]
          Length = 1011

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 7/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL  KND++ +I AV+L +       F  F+ P  R       KL  I    
Sbjct: 54  VALDTETTGLSHKNDQLTQIAAVKLEEG-SVADEFTTFVNP-SRPIPHNIEKLTNIYSVD 111

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+  +  +   DF        +AHNA FD  FI A              +  +   
Sbjct: 112 VEHAPTPQTAVARLADFVEL--DPILAHNASFDRAFIEAAQNDTCVSDTWIDTLALSRIA 169

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                  + + L  L   +G        +        +    + 
Sbjct: 170 FPA---LTSHKLQDLAYIFGCESVTHRANDDCTALAGVWHYILA 210


>gi|71907013|ref|YP_284600.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71846634|gb|AAZ46130.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 204

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 5/98 (5%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL   + DR  EI AV L +    +R +Q  +   G +      +L GI++  
Sbjct: 6   VIDFETTGLSPAQGDRATEIAAVILENGKVVDR-YQSLMN-AGVRIPSFIEQLTGISNAM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ++  P  + +  E  DF  +     +AHNA FD  F +
Sbjct: 64  IRSAPPAAQVMREVSDFVGD--IPLVAHNASFDCKFWD 99


>gi|15616394|ref|NP_244699.1| hypothetical protein BH3832 [Bacillus halodurans C-125]
 gi|10176457|dbj|BAB07551.1| BH3832 [Bacillus halodurans C-125]
          Length = 265

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 8/177 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ET+G    + DRI+ IGAV+++    +   TF   +           L+L G++ 
Sbjct: 81  VVFDLETSGFYPDQGDRILSIGAVKVVGLTIQEEETFYSVVH-TDTVPPENILELTGLSV 139

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L+  P  +S+   F+ F           +         + +           R+IDT 
Sbjct: 140 EELEAAPPLTSVLESFYAFIRHSTLVA---HHASHEKAFMSHVTWQTMKLPFEHRVIDTS 196

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            + +   P     L+  C  Y  +I  +++H A  DS + + ++I  +    +  F 
Sbjct: 197 FLTKIVAPQELVTLDDCCAYY--SIPVQNRHHAFEDSLMTAKLWIAAIAAAREAGFE 251


>gi|262379336|ref|ZP_06072492.1| ribonuclease T [Acinetobacter radioresistens SH164]
 gi|262298793|gb|EEY86706.1| ribonuclease T [Acinetobacter radioresistens SH164]
          Length = 219

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 64/197 (32%), Gaps = 16/197 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54
           +V D+ET G +++ D ++EI  + ++            +   + P           +   
Sbjct: 23  VVVDVETAGFNAQTDALLEIACIPIIYDEEGKFIPGPAYHAHINPFEGANLDRRSLDFIG 82

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P       + ++             +        +A  + HNA FD+GF+ A + R  
Sbjct: 83  VDPFNPMRMAMAEDEKTALKRIFKSIHDIRREQLCTHAILVGHNAHFDLGFLQAAINRSG 142

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +P                    + +  C + GI    +  H AL D+   ++++  
Sbjct: 143 TKNQNPFHSFSVFDTVTLSALMFGQTVLAKSCLQAGIEFDGKEAHSALYDTQKTAELFCY 202

Query: 174 MMVGGSQINFGFKTNED 190
           ++   +         + 
Sbjct: 203 ILNKLAPQLLDTLVADQ 219


>gi|255320382|ref|ZP_05361566.1| ribonuclease T [Acinetobacter radioresistens SK82]
 gi|255302577|gb|EET81810.1| ribonuclease T [Acinetobacter radioresistens SK82]
          Length = 215

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 64/197 (32%), Gaps = 16/197 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54
           +V D+ET G +++ D ++EI  + ++            +   + P           +   
Sbjct: 19  VVVDVETAGFNAQTDALLEIACIPIIYDEEGKFIPGPAYHAHINPFEGANLDRRSLDFIG 78

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P       + ++             +        +A  + HNA FD+GF+ A + R  
Sbjct: 79  VDPFNPMRMAMAEDEKTALKRIFKSIHDIRREQLCTHAILVGHNAHFDLGFLQAAINRSG 138

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +P                    + +  C + GI    +  H AL D+   ++++  
Sbjct: 139 TKNQNPFHSFSVFDTVTLSALMFGQTVLAKSCLQAGIEFDGKEAHSALYDTQKTAELFCY 198

Query: 174 MMVGGSQINFGFKTNED 190
           ++   +         + 
Sbjct: 199 ILNKLAPQLLDTLVADQ 215


>gi|253989411|ref|YP_003040767.1| ribonuclease T [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253780861|emb|CAQ84023.1| ribonuclease T [Photorhabdus asymbiotica]
          Length = 217

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 74/186 (39%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+  ++ D      + +    + P  G    P AL+  G
Sbjct: 20  VVIDVETGGFNAKTDALLEIAAITLKMDDEGWITPDESLHFHIEPFEGANLEPAALEFTG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +     +   A  +AHNA FD GF+ A  +R    
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKNSHCNRAIIVAHNANFDHGFVMAAAERARLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   G++  +   H AL D++  ++++ +M+ 
Sbjct: 140 RNPFHPFATFDTAALGGLVLGQTILAKACITAGVSFDNNQAHSALYDTNRTAELFCEMVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|154343419|ref|XP_001567655.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134064987|emb|CAM43098.1| exonuclease-like protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 292

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 82/234 (35%), Gaps = 63/234 (26%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD---------------------------YSKT-- 40
           +V D+ETTG     D I+E+G VEL                                   
Sbjct: 53  VVVDLETTGFSPTADEILEVGCVELRWTPSSRTTLTGPKDADPCAPPLEKQGSCGVLEGL 112

Query: 41  ----NRTFQVFLCP-NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE------ 89
                R F  ++ P + R+ +  A  +HGIT E ++    +  + SE   +         
Sbjct: 113 WTRGGRVFHRYVRPSHPRRITAAATAVHGITWEKVQHCAPWPVVASELVAYMTLIRADAL 172

Query: 90  ------------------QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTLSI 129
                                  +AHNA FD  F+   LQR         +     T   
Sbjct: 173 FTKSVQVEAAQHGGHSAVHLPPLVAHNALFDARFLAHHLQRCGYQIFWHPQYPLTCTRQW 232

Query: 130 ARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           A+  +P   N+L++LC      G      + HGAL D+ L + ++++M    ++
Sbjct: 233 AQVAYPHLANNLDTLCAFLSIDGAADRATNGHGALTDATLTALLFLRMCCRWTE 286


>gi|326576077|gb|EGE25996.1| DNA polymerase III subunit epsilon [Moraxella catarrhalis O35E]
          Length = 120

 Score = 62.6 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLH 63
          + FD ETT LD    +II IGAV++  +   T+ TF++ + P G   +       
Sbjct: 31 VSFDCETTSLDISEAQIISIGAVKIRGNRILTSETFEILIKPEGMIQATNVTIHG 85


>gi|241763877|ref|ZP_04761921.1| Exonuclease RNase T and DNA polymerase III [Acidovorax
          delafieldii 2AN]
 gi|241366845|gb|EER61267.1| Exonuclease RNase T and DNA polymerase III [Acidovorax
          delafieldii 2AN]
          Length = 219

 Score = 62.6 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51
           +  D ETTGL+ ++D II IGAV +  +   T+   ++ + P+
Sbjct: 42 WVALDCETTGLNVRSDEIIAIGAVRIAGNRILTSERLELLVRPD 85


>gi|116491119|ref|YP_810663.1| Rad3-related DNA helicase [Oenococcus oeni PSU-1]
 gi|118586913|ref|ZP_01544346.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163]
 gi|290890627|ref|ZP_06553698.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429]
 gi|116091844|gb|ABJ56998.1| 3'-5' exonuclease domain and Rad3-related DNA helicase [Oenococcus
           oeni PSU-1]
 gi|118432640|gb|EAV39373.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163]
 gi|290479755|gb|EFD88408.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429]
          Length = 489

 Score = 62.6 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 81/204 (39%), Gaps = 9/204 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETT    +   II+IG   + ++      FQ  + P G K   + + L GI +E +
Sbjct: 9   IVDLETTAPFKEGGHIIQIGISFVKNWKII-NNFQTMVNP-GVKIPEQIVDLTGIKNEDV 66

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ P F  +     D  +     ++AHN ++D  ++N E  RI    L    +       
Sbjct: 67  ENAPYFEDLARMIHDQLSG--TVFVAHNVRYDFPYLNGEFARIKMRRLRLEYVDTVQLAQ 124

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFGFKT 187
                 +   L+ L  + G  I+    H A  D+   + +++   + +    Q       
Sbjct: 125 IVFPTMNSYKLDELVSKLG--INLPRHHRADQDASATAQLFLKIHEHLQEFPQNTLNNLI 182

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
           N  +      +T+  +S  KR  P
Sbjct: 183 NHSKSLLGNTETIFQLSKGKRTFP 206


>gi|238855548|ref|ZP_04645851.1| DNA polymerase III [Lactobacillus jensenii 269-3]
 gi|260665137|ref|ZP_05865987.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US]
 gi|282932326|ref|ZP_06337761.1| DNA polymerase III [Lactobacillus jensenii 208-1]
 gi|238831832|gb|EEQ24166.1| DNA polymerase III [Lactobacillus jensenii 269-3]
 gi|260561191|gb|EEX27165.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US]
 gi|281303547|gb|EFA95714.1| DNA polymerase III [Lactobacillus jensenii 208-1]
          Length = 316

 Score = 62.6 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 1/138 (0%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIETTGL    DR+ E+  +++ +    ++ +   +        P+ +      DE L 
Sbjct: 38  LDIETTGLSPYRDRVTELAGIKVRNGKVVDK-YSQLVKHPKNNKVPQFITKLNGIDEKLI 96

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                    +             + +N  FD+ FI    ++ N + L  + I        
Sbjct: 97  LTQGIPVKEAITDFRNFIGEDVIVGYNVNFDLNFIYDLCEKFNLERLSNNYIDVLHFSRV 156

Query: 132 RKHPSSRNDLNSLCKRYG 149
                S N L    +R G
Sbjct: 157 FFKKESHNRLLDCIQRLG 174


>gi|218295641|ref|ZP_03496437.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
 gi|218243800|gb|EED10327.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
          Length = 627

 Score = 62.6 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTGLD + D II +GAV LL      +  ++  + P GR     + ++HG+T E 
Sbjct: 445 AFDLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDP-GRPIPKASTEVHGLTWEM 503

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LKDKP    +   F  F     +  +AHN  FD+ F+        K  +D   ++DTL +
Sbjct: 504 LKDKPKLEEVLPAFRAFLEG--SVLVAHNGAFDMAFLR-------KVGIDQPPLVDTLLL 554

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           A    P  ++            +    +H AL D+ + ++VY +M+    +  F
Sbjct: 555 AHLLFPDLKDHRLERLAER-FGVPVLGRHTALGDALMTAEVYARMIPLLKERGF 607


>gi|257792837|ref|YP_003183443.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243]
 gi|257476734|gb|ACV57054.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243]
          Length = 966

 Score = 62.6 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 9/168 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +V D ETTG    +D + +I A  +         F  F+ P G+    +   L  I D
Sbjct: 9   NVVVLDTETTGFSFNHDELTQIAAARMEQGEIV-EWFITFVNP-GKPIPEDVAHLTDIHD 66

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P  +   ++  +F  +  A+ +AHNA+FD  F                  +D  
Sbjct: 67  RDVADAPLPADALAKLVEFIGD--AKVVAHNAEFDRTFTTRHPSGYPLLENTWIDSLDLA 124

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            IA       R   + L        +  S H A  D      ++  ++
Sbjct: 125 RIA-----LPRMKSHRLLDLVRAFGAPLSTHRADADVEATCAIFRILL 167


>gi|306822551|ref|ZP_07455929.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309801474|ref|ZP_07695601.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554096|gb|EFM42005.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308221989|gb|EFO78274.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 328

 Score = 62.6 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 9/175 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTGL+  + DR IEIG V +          +  +          A  +H I+ 
Sbjct: 17  YAVVDFETTGLNPARGDRAIEIGLVHVAPDGTLEDEHETLIR---VHRDIGAQWIHHISA 73

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L   P F  I  E  D        ++AHN  FD  F+ +E +      +  +      
Sbjct: 74  VELIHAPEFEGIARELRDLLAG--RVFVAHNVAFDSKFLLSEYR-RLGADIPVNSHTMLC 130

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++   +       L   C+ +GI   +   H AL D+H  + +  ++M    + +
Sbjct: 131 TMKLSRSLIGVGSLADCCREFGID--NEDAHSALSDAHATALLLGRLMDADPKWS 183


>gi|21684658|gb|AAL87523.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps]
          Length = 212

 Score = 62.6 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 1/166 (0%)

Query: 19  LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSS 78
           L  +  R+ E+G VE+     T   F  ++ P  ++ +  A  +HG+ DEFL  +P+FS+
Sbjct: 1   LSPRYHRLAEVGCVEIACGRITGNYFHAYINP-RQRMTRGAQAVHGLRDEFLATQPAFSA 59

Query: 79  IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138
           I      F  +        +   +                    +IDT+    ++    R
Sbjct: 60  IAQRLLFFLCQSTLVGHNLSFDLNFLDAGLATAGFMPAARYCHGVIDTMCHLAQRGSRRR 119

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
             L++ C   G+    R++HGAL+D+ LL++ ++       +I + 
Sbjct: 120 FSLDACCDMLGVRRGDRARHGALVDAVLLAEAFVVAKRTRPKIGYN 165


>gi|288554471|ref|YP_003426406.1| hypothetical protein BpOF4_07280 [Bacillus pseudofirmus OF4]
 gi|288545631|gb|ADC49514.1| hypothetical protein BpOF4_07280 [Bacillus pseudofirmus OF4]
          Length = 245

 Score = 62.6 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 69/178 (38%), Gaps = 7/178 (3%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            IVFD+ET+G    K D I+ IGAV++         +F   +      +S          
Sbjct: 59  FIVFDLETSGFFPDKGDEILSIGAVKMKGAEVLFEESFYSTVQCKKEPSSDVLSLTGLTL 118

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E    +P    +   +           +AH+A  +  F++    ++ + P     I  T
Sbjct: 119 EELQSSRPLIEVLNDFYE---FVGGGTLVAHHATHEKRFMSHMTWQLMRMPFAHRIIDTT 175

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                  H  +   L+  C  Y I I   ++H AL D+ + ++++ + +    +  F 
Sbjct: 176 FLTRVVAHDENLVTLDECCIYYNIPI--TTRHHALYDAKMTAELWGQSLKLAQEKGFS 231


>gi|149372305|ref|ZP_01891493.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
 gi|149354695|gb|EDM43258.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
          Length = 460

 Score = 62.6 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 84/243 (34%), Gaps = 22/243 (9%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   + DIETTG     + I EI           ++ F   + P  R   P  + L GI 
Sbjct: 1   MNYAILDIETTGGKYNEEGITEIAIYRFDGEKVVDQ-FCSLVNPE-RPIQPFVVNLTGIN 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + LK+ P F  +     +    ++   +AHNA+FD   +    +            + T
Sbjct: 59  SDMLKNAPKFYEVAKRIVE--ITKDCILVAHNAQFDNRILT--TEFDRLGYDFDLETLCT 114

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           + ++++  P   +          + I    +H A  D+     ++  ++          K
Sbjct: 115 VELSKKLIPDMPSYSL-GKLVRSLGIPITDRHRAQGDAKATVTLFKMLL---------LK 164

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE-----ELDEHDKTIQTLGKNAIWDRYI 241
             E    K   K  P   +  +   L  +   E       D H   +  +GK+    + +
Sbjct: 165 DTEKEIIKAAVKKDPKRQIDTKLLDLIKQAPSETGVYYMHDTHGNIL-YIGKSKNIKKRL 223

Query: 242 SSN 244
           + +
Sbjct: 224 TQH 226


>gi|149194547|ref|ZP_01871643.1| Exonuclease [Caminibacter mediatlanticus TB-2]
 gi|149135291|gb|EDM23771.1| Exonuclease [Caminibacter mediatlanticus TB-2]
          Length = 204

 Score = 62.6 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLC 49
          +V D ETTGLD+K D II IGAV + +     ++ F +++ 
Sbjct: 31 VVIDTETTGLDTKKDEIISIGAVIVKNNKILLSKKFHIYVK 71


>gi|94991249|ref|YP_599349.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10270]
 gi|166217452|sp|Q1JEV4|DPO3_STRPD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94544757|gb|ABF34805.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10270]
          Length = 1465

 Score = 62.6 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D     ++   F DF  +  +  +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 485 HLQDAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKDARE 592


>gi|56808719|ref|ZP_00366439.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus pyogenes M49 591]
 gi|209560099|ref|YP_002286571.1| DNA polymerase III PolC [Streptococcus pyogenes NZ131]
 gi|209541300|gb|ACI61876.1| DNA polymerase III alpha subunit [Streptococcus pyogenes NZ131]
          Length = 1465

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D     ++   F DF  +  +  +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 485 HLQDAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKDARE 592


>gi|329119491|ref|ZP_08248176.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464424|gb|EGF10724.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 484

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 69/174 (39%), Gaps = 8/174 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTG     DRI EI  +     + T   +   + P  R   P   +L GI DE +
Sbjct: 45  IVDLETTGGSFDTDRITEIAFLRFDGGTVT--PYHSLVHPE-RPIPPFIRRLTGIGDETV 101

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P FS++  E            +AHN+KFD  F+     R       P+     LS  
Sbjct: 102 AGAPPFSALAHELLPLLRG--CILLAHNSKFDYTFLRRAFARCGLPFAAPTLCTVQLS-R 158

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           R      ++ L S+ +R+GI     S+H A  D   ++D     +       F 
Sbjct: 159 RLYPQFYKHSLESIIERHGIA--AASRHRATDDVLAVADYLETALREQGSETFA 210


>gi|126661959|ref|ZP_01732958.1| putative DNA polymerase III epsilon chain [Flavobacteria bacterium
           BAL38]
 gi|126625338|gb|EAZ96027.1| putative DNA polymerase III epsilon chain [Flavobacteria bacterium
           BAL38]
          Length = 256

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 81/214 (37%), Gaps = 9/214 (4%)

Query: 2   IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           +     R I  FD+ETTG+D   DRI+EI   ++  + +K ++T+   + P      P+ 
Sbjct: 1   MELKLTRPICFFDLETTGIDVARDRIVEISIFKVYPNGNKESKTW--LVNP-TIPIPPQT 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGITDE + ++P+F  + ++  +   + +      +           L+      + 
Sbjct: 58  TAVHGITDEKVANEPTFKELATQVHNMIKDSDLAGFNSDRFDIPLLAEELLRAEVDFDMK 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               +D  +I  +          S   ++    S  + H A  D+    ++    +    
Sbjct: 118 NRVSVDVQTIFHK----MEERTLSAAYKFYCGQSLENAHSAEADTMATYEILKSQLDRYE 173

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
            +    K+  +   +++         L ++    
Sbjct: 174 NLENDMKSLSEFTTRKKSVDFAGFITLNKEGKEI 207


>gi|300173471|ref|YP_003772637.1| ATP-dependent helicase DinG [Leuconostoc gasicomitatum LMG 18811]
 gi|299887850|emb|CBL91818.1| ATP-dependent helicase DinG [Leuconostoc gasicomitatum LMG 18811]
          Length = 801

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 7/174 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+ETTG    K  RII+IG   +         F+ F+ P G+       +L  I  
Sbjct: 7   FVVVDLETTGQSVTKGGRIIQIGMTFIKQRQIV-DHFESFVNP-GQLIDRNIQQLTHIAQ 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +K+ P F  +     +     N   IAHN  FD  ++N E +R     L  S I    
Sbjct: 65  KDVKNAPYFEELAPMLQNLL--NNTIIIAHNVNFDYPYLNDEFRRTGFPELTSSAIDTVQ 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                   +    L  L       I+  + H A  D+H  + +++K+     Q+
Sbjct: 123 LAQILLPTAPGYRLVDLTTYL--DITLNNAHRANADAHATARLFLKLWQRAEQL 174


>gi|260592337|ref|ZP_05857795.1| exonuclease [Prevotella veroralis F0319]
 gi|260535724|gb|EEX18341.1| exonuclease [Prevotella veroralis F0319]
          Length = 283

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 59/163 (36%), Gaps = 5/163 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IVFD+ETTGLD   DRII+I  +++  D  +    F  F+ P G+       +L GI+DE
Sbjct: 10  IVFDLETTGLDLVADRIIQISYIKVYADGKEERENF--FINP-GKHIPTIVTELTGISDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F     E  D F   +      N  FDV  +  E  R   D       +    
Sbjct: 67  DVADAPTFKQKAKELADKFAGCDFAGFNSNR-FDVPMLAEEFLRAGIDFDFSKCRLIDAQ 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               K                        H A  D+     V 
Sbjct: 126 NIYHKMERRNLAAAYKFYCGRKMEEDFVAHRADQDTEATWRVL 168


>gi|228477790|ref|ZP_04062418.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus salivarius SK126]
 gi|228250482|gb|EEK09696.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus salivarius SK126]
          Length = 1464

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 6/193 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 426 YVVFDVETTGLSAVHNDLIQIAASKMHKGNII-EQFDEFIDP-GHPLSAFTTELTGITDN 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +  EF +F        +AHNA FDVGF+NA  +R     +    I     
Sbjct: 484 HVKGAKPLVQVLQEFQEFCQG--TVLVAHNATFDVGFMNANYERHQLPTISQPVIDTLEF 541

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                    R+ L  L KR+G+     H + + A     LL      +       N    
Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALDHHHMANYDAEATGRLLFIFIKDVFDKHGLTNLEQL 601

Query: 187 TNEDRFFKEEKKT 199
             E       KK+
Sbjct: 602 NTELVSEDSYKKS 614


>gi|170698522|ref|ZP_02889593.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170136606|gb|EDT04863.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 375

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  S   RI EIG VE+     +  T+   + P G+   P   +L GI+DE 
Sbjct: 16  VFVDLETTGGSSAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQAIPPFIQQLTGISDEM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+S+     +  +     ++AHNA FD GF+ AE +R                 
Sbjct: 73  VRDAPSFASLAPALVERLDG--KLFVAHNASFDRGFLRAEFERAGIAFNPDVLCT-VRLS 129

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  +R+ L++L +R+G+     ++H AL D+ LL   + ++
Sbjct: 130 RALFPREARHGLDALIERHGLV--PAARHRALADADLLWQFWRQL 172


>gi|120436251|ref|YP_861937.1| exonuclease family protein [Gramella forsetii KT0803]
 gi|117578401|emb|CAL66870.1| exonuclease family protein [Gramella forsetii KT0803]
          Length = 223

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFL-----CPNGRKNS 56
          R IVFD ETTG +   DR++ IGAV + +   + +  F+VFL      P   K  
Sbjct: 38 RFIVFDTETTGFNYDEDRVLSIGAVRIENNSIEISDNFEVFLEQKKFNPETVKIH 92


>gi|325066430|ref|ZP_08125103.1| DNA polymerase III subunit epsilon-like protein [Actinomyces oris
           K20]
          Length = 259

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 54/150 (36%), Gaps = 4/150 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL    D I+E+  V      +   ++   + P G         +HG+  E
Sbjct: 42  YAVVDLETTGLSPTTDSILEVALVLTDAAGRVEHSWSTLIDP-GVGVDVGPTHIHGLVAE 100

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L   P F  +               +AHNA+FDVGF+   L              + T+
Sbjct: 101 ELIGAPGFDEVADLLVADLAG--RPVVAHNARFDVGFLTQALGTRGLLDRGARVPRVCTM 158

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK 157
             A     +    L + C+  G+ I     
Sbjct: 159 EWAHHFMTTPSRRLTTCCEVAGVEIGRHHN 188


>gi|322411039|gb|EFY01947.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 1465

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+      ++   F DF  +  +  +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKDARE 592


>gi|317489230|ref|ZP_07947747.1| exonuclease [Eggerthella sp. 1_3_56FAA]
 gi|325832235|ref|ZP_08165234.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1]
 gi|316911631|gb|EFV33223.1| exonuclease [Eggerthella sp. 1_3_56FAA]
 gi|325486071|gb|EGC88525.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1]
          Length = 998

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 9/168 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +V D ETTG    +D + +I A  +         F  F+ P G+    +   L  I D
Sbjct: 41  NVVVLDTETTGFSFNHDELTQIAAARMEQGEIV-EWFITFVNP-GKPIPEDVAHLTDIHD 98

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P  +   ++  +F  +  A+ +AHNA+FD  F                  +D  
Sbjct: 99  SDVADAPLPADALAKLVEFIGD--AKVVAHNAEFDRTFTTRHPSGYPLLENTWIDSLDLA 156

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            IA       R   + L        +  S H A  D      ++  ++
Sbjct: 157 RIA-----LPRMKSHRLLDLVRAFGAPLSTHRADADVEATCAIFRILL 199


>gi|38344168|emb|CAE03499.2| OSJNBa0053K19.7 [Oryza sativa Japonica Group]
 gi|116309750|emb|CAH66793.1| H0215F08.4 [Oryza sativa Indica Group]
 gi|125591688|gb|EAZ32038.1| hypothetical protein OsJ_16216 [Oryza sativa Japonica Group]
 gi|215712387|dbj|BAG94514.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 260

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 75/201 (37%), Gaps = 16/201 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTG   K+ RI+E    +L      N TF+  + P  R        L  I  + +
Sbjct: 64  VFDLETTGYFHKDHRIVEFALCDLSGGK--NSTFETLVNPE-RTVPDYVEHLIKIGTDLV 120

Query: 71  KDK--PSFSSIFSEFWDFFNEQNAE-----WIAHN-----AKFDVGFINAELQRINKDPL 118
                P FS +      F   + A      W+AHN     A+F     +     +  D L
Sbjct: 121 CRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPLPADWL 180

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               ++    + + +    R  L +L + YGI       H A+ D  +LS V+ KM    
Sbjct: 181 FFDTLLLAKKMVKAEGKKRRTSLEALREHYGIVSH-DDAHRAMRDVMILSQVFQKMTFDL 239

Query: 179 SQINFGFKTNEDRFFKEEKKT 199
              N        +  +  K +
Sbjct: 240 KLTNEELINEAMKASEFSKIS 260


>gi|116618479|ref|YP_818850.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097326|gb|ABJ62477.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 797

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 3/167 (1%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+ETTG    K  RII+IG   +         F+ F+ P G+    +  +L  I+ 
Sbjct: 7   FVVVDLETTGHSVKKGGRIIQIGMTFIKKRQIV-DHFESFVNP-GQLIDRQIQQLTHISQ 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +++ P F  I     +            N  +       E              +   
Sbjct: 65  KDVQNAPYFEEIAPLLQNLLQNTVIIAHNVNFDYPYLNDEFERTGFPLLKSAAIDTVQLA 124

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            I     P  R    +      +  +HR+   A   + L    + K+
Sbjct: 125 QILFPTAPGYRLLDLTTYLNITLKNAHRANADAHATALLFLKFWKKL 171


>gi|282859398|ref|ZP_06268505.1| exonuclease [Prevotella bivia JCVIHMP010]
 gi|282587832|gb|EFB93030.1| exonuclease [Prevotella bivia JCVIHMP010]
          Length = 287

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 74/208 (35%), Gaps = 7/208 (3%)

Query: 2   IRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  R  I+FD+ETTGLD  NDRII+I  ++     +  R   +F+ P  ++   E +
Sbjct: 1   MKLNLTRPLIIFDLETTGLDLVNDRIIQISYIKAYPDGREERE-NIFINPE-KQIPEEVI 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GIT+  + + P+F     E    F   +      N           L+   +     
Sbjct: 59  ALTGITNADVAEAPTFKEKGKELAQKFAGCDFAGFNSNRFDVPMLAEEFLRAGVEFDFSK 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++ID  +I  +          +    +           A          +  +      
Sbjct: 119 CKLIDAQNIFHK----MERRNLAAAYEFYCGRKMEDDFEAHRADQDTEATWAVLQGEIEM 174

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKR 208
            +   + +E+R  +    ++   S +  
Sbjct: 175 YSAERQKDEERILENNVDSLAEFSKMNN 202


>gi|21911223|ref|NP_665491.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS315]
 gi|28896601|ref|NP_802951.1| DNA polymerase III PolC [Streptococcus pyogenes SSI-1]
 gi|25452927|sp|Q8K5S8|DPO3_STRP3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21905436|gb|AAM80294.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
           MGAS315]
 gi|28811855|dbj|BAC64784.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
           SSI-1]
          Length = 1465

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+      ++   F DF  +  +  +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKDARE 592


>gi|300771841|ref|ZP_07081712.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761227|gb|EFK58052.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 1474

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 69/230 (30%), Gaps = 19/230 (8%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            I+FD ETTGL  + D          R I+I      D           + P+G     +
Sbjct: 2   YIIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDDMGNMVEHADFLIAPDGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           + K+HGI+ E  +++          ++    +    +  N  FD+  +  E  R   +  
Sbjct: 62  SEKIHGISTELAQERGIPIQEALVRFNEALAKAKFVVGQNIGFDLNIMGCEFYRYGVESP 121

Query: 119 DPSRIIDTLSIARRKHP---------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                +                      +    +    Y   +     H A  D    + 
Sbjct: 122 MAGMPVLDTCTEVTAELLKLPGGRGGRYKLPNLTELHTYLFGVPFAEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +++++          + +   F + + +    I  +        + + E
Sbjct: 182 CFLELVRLEVFTLDQLQQDTGYFVEFKTQNPGPIETVGLQHLNLKKASDE 231


>gi|94995162|ref|YP_603260.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10750]
 gi|123382133|sp|Q1J4M0|DPO3_STRPF RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94548670|gb|ABF38716.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10750]
          Length = 1465

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+      ++   F DF  +  +  +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKDARE 592


>gi|77360920|ref|YP_340495.1| hypothetical protein PSHAa1996 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875831|emb|CAI87052.1| conserved protein of unknown function; putative enzyme
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 730

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 4/114 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG     ++I EIG V++        T+   + P  R        L GI+D  +
Sbjct: 569 VVDLETTGALKGGNKITEIGLVKVQHGKVI-DTWTTLVNPQ-RHIPGFITSLTGISDSMV 626

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            + P F+ I            + ++AHN  FD GFI  E +        P    
Sbjct: 627 SNAPVFADIVKPLMAKLAG--SIFVAHNVNFDYGFIKKECEMAKVPFKMPKLCT 678


>gi|116255734|ref|YP_771567.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260382|emb|CAK03486.1| putative exonuclease/polymerase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 326

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 79/231 (34%), Gaps = 30/231 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+ +ND IIEIGAV     D         ++  L    R   PE  +L GI
Sbjct: 75  VILDTETTGLNHRNDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIPPEITRLTGI 134

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD  ++ +     I  +      E     IAHNA FD  F  A  +              
Sbjct: 135 TDAMVEGQ----LIDIQSLRTLIEPADLIIAHNAGFDRPFCEAFSKIFTGKAW------- 183

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-----------YIKM 174
             S++     +   +   L    G        H A+ D H L ++           + ++
Sbjct: 184 ACSVSEIDWSARGFEGTKLGYLVGQAGYFHEGHRAVDDCHALLEILDREQRDGESPFTEL 243

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEEL 221
                +           F  +++              R K  +  + +E+L
Sbjct: 244 YRASQRSRIRIFAEHSPFEMKDQLKARGYRWSDGSDGRLKSWWIEVGEEDL 294


>gi|71911485|ref|YP_283035.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS5005]
 gi|71854267|gb|AAZ52290.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS5005]
          Length = 1465

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+      ++   F DF  +  +  +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKDARE 592


>gi|217970527|ref|YP_002355761.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|217507854|gb|ACK54865.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 203

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 6/103 (5%)

Query: 7   MRKI-VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M  + V D ETTGL   + DR  EI AV + D    +R +Q  +   G +       L G
Sbjct: 1   MEAVAVIDFETTGLSPAQGDRATEIAAVIVEDGRVVDR-YQSLMN-AGVRIPAYIEALTG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           IT+  ++  P    +  +  DF  +     +AHNA FD  F +
Sbjct: 59  ITNAMVRSAPLAGEVMRDVSDFVGD--MPIVAHNASFDAKFWD 99


>gi|81428523|ref|YP_395523.1| ATP-dependent helicase [Lactobacillus sakei subsp. sakei 23K]
 gi|78610165|emb|CAI55214.1| Putative ATP-dependent helicase, DinG family [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 944

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 78/227 (34%), Gaps = 22/227 (9%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG + K  DRII+ G   + +     +T    + P  R    +   L  IT 
Sbjct: 7   YAVVDLETTGTNIKDGDRIIQFGCALVQNGKII-QTISQDVNP-LRDVPTKIQHLTHITA 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L+  P F  +     +  +         N              +    L     ++  
Sbjct: 65  DQLELAPIFEDLAPTLVEILSGTVFVAHNINFDLPFLNGELTRVGLQPLDLAGIDTVELA 124

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-----------MV 176
            I   + PS R    +      + I H + H A  D+ + + +++K+           + 
Sbjct: 125 QIILPEAPSYRLQDLTQL----LEIEHDNPHQADSDALVTAKLFLKLSARLQALPSVTLN 180

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
             S++  G       FF +  + +   S    ++ L     +EE+  
Sbjct: 181 RLSELGEGLLRQTGDFFTDTAQQMREKSQPLPNELLI----QEEIAL 223


>gi|315641197|ref|ZP_07896274.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
 gi|315482964|gb|EFU73483.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
          Length = 1445

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 6/173 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P    +      ++     
Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMHKGN-VEASFDEFIDPG---HPLSNTTINLTGIT 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               + S S            + A  +AHNA FD+GF+N   ++      +   I     
Sbjct: 481 DEMVRGSKSEEEVLRLFREFSEGAVLVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLEL 540

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                    R  L  L K++G+     HR+ + A    HL      + M    
Sbjct: 541 ARYLYPEFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHLAWIFVKEAMEHHK 593


>gi|83643302|ref|YP_431737.1| putative exonuclease [Hahella chejuensis KCTC 2396]
 gi|83631345|gb|ABC27312.1| putative exonuclease [Hahella chejuensis KCTC 2396]
          Length = 192

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 8/125 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D ETTGLD     +IEI  +++         F   + P      PEA ++HG+T+
Sbjct: 16  RVVVLDTETTGLD-DQAEVIEISVMDMRGNVL----FDQLVRP-LNPVPPEAAEIHGVTN 69

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L +KP+F  ++   W     +     A+NA FD   +           ++ +      
Sbjct: 70  EKLANKPNFPDVYISLWRAIGGRTVV--AYNADFDRRLLKQTCAAYRLPMIEANWQCAMN 127

Query: 128 SIARR 132
           + AR 
Sbjct: 128 AYARY 132


>gi|15675759|ref|NP_269933.1| DNA polymerase III PolC [Streptococcus pyogenes M1 GAS]
 gi|81175278|sp|P0C0B8|DPO3_STRP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13622981|gb|AAK34654.1| DNA polymerase III (alpha subunit) [Streptococcus pyogenes M1 GAS]
          Length = 1465

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+      ++   F DF  +  +  +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKDARE 592


>gi|289423924|ref|ZP_06425717.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
 gi|289155701|gb|EFD04373.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
          Length = 188

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 14/171 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIET+GL+ + + I+E+GAV + D       ++  + P  +  S EA K++G+T   L
Sbjct: 29  VIDIETSGLNPEKNEILELGAVRVRDNIVVAE-YEQLIRP-RKSISKEATKVNGLTKRML 86

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D+P    +  +F DF  +            +       ++    D L  +R +  +   
Sbjct: 87  IDEPFVEDVIWDFKDFLGKDVLIGHNIEFDLEFIRNQLPIRNKYIDTLPLARKLLKIKRH 146

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           R         +                H ++ D +     Y KM     ++
Sbjct: 147 RLIDICHHYKI------------PEPNHRSISDCNATHLCYQKMKEPLKKL 185


>gi|294668271|ref|ZP_06733376.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309790|gb|EFE51033.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 493

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 9/166 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+E TG +   DRI EI  +       +  +++  + P  R        L GI DE 
Sbjct: 22  VIIDLEATGGNPYTDRITEIAFLRFDGNGVS--SYRQLVNPQ-RNIPEFVSNLTGIDDEM 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P F+ +  +            +AHN+KFD  F+  E  R        +  + T+ +
Sbjct: 79  VADAPPFADLSDDLLHRLRG--TLLLAHNSKFDYTFLRHEFSRCRLS--YAAPTLCTVQL 134

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +RR +P                I+  S+H A+ D   L+D Y+++ 
Sbjct: 135 SRRLYPQFFKHNLDSIIERH-QIAVSSRHRAMNDVLALAD-YLELT 178


>gi|228474048|ref|ZP_04058789.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
 gi|228274562|gb|EEK13403.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
          Length = 257

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 76/233 (32%), Gaps = 21/233 (9%)

Query: 2   IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           +  N  R I  FD+ETTG D   DRI+EI  +++  + ++ ++T+   + P      P +
Sbjct: 1   MELNLTRPICFFDLETTGTDVSRDRIVEISILKVWPNGNRESKTY--LVNP-TIPIPPAS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGI+DE +   P+F  +  +      + +      +           L+      L 
Sbjct: 58  TAIHGISDERVAQAPTFKELAKQIHAMIKDSDLAGYNSDRFDIPLLAEELLRAGVDFDLK 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               +D  +I  +          S   ++       + H A  D+    ++    +   S
Sbjct: 118 NRVTVDVQTIFHK----MEQRTLSAAYKFYCKKELDNAHTAAADTEATYEILKAQLDTYS 173

Query: 180 QINFGFKTNEDRFFKE------------EKKTVPNISLLKRDKPLFTRITKEE 220
                       F                 K     +  K        I +EE
Sbjct: 174 DTLPNDIKQLSEFTTRSQIADFAGFIAYNDKGEEIFTFGKHKGRKVEEILEEE 226


>gi|148653458|ref|YP_001280551.1| ribonuclease T [Psychrobacter sp. PRwf-1]
 gi|148572542|gb|ABQ94601.1| RNAse T [Psychrobacter sp. PRwf-1]
          Length = 274

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 68/209 (32%), Gaps = 16/209 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54
           +V D+ET G ++  D ++EI  + ++                L P           +   
Sbjct: 63  VVVDVETAGFNAATDALLEIACIPIVMDDEGKFVPGEPLSAHLNPFEGANLEQRALDFTG 122

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P       I +E                   +      + HNA FD+ F+NA ++R N
Sbjct: 123 IDPNNPMRKAIAEEEQPALRRIFKELKAVRKDNDCLKCILVGHNAHFDLSFLNAAIERTN 182

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +P      L        +    + +  C+  GI       H AL D+   ++++ K
Sbjct: 183 SKNHNPFHQFSVLDTVTLSALAFGQTVLARACRAAGIEFDGSEAHSALYDTQKTAELFCK 242

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPN 202
           ++   S +      +     +   + V  
Sbjct: 243 ILNHYSMMPISLPEDNTTDEQSGVELVNK 271


>gi|86130357|ref|ZP_01048957.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
 gi|85819032|gb|EAQ40191.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
          Length = 466

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 7/165 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTG     +RI E  AV L D    ++ F   + P  +   P    L GI D  +
Sbjct: 11  IIDVETTGKGINGNRITEFCAVRLKDGEIIDK-FTSLVNPE-QYIPPFITNLTGIDDAMV 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D P F  I     +    + A ++AHN  FD   I  E +R+    +            
Sbjct: 69  EDAPLFEEIAQRVLE--ITEGAIFVAHNVNFDFNVIKGEFKRLGVSFVRKKLCT-VRLSR 125

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +         L +LC   GI     ++H A  D+     ++ +++
Sbjct: 126 KLIPNLFSYSLGNLCASIGIP--LNNRHRAEGDTDATVILFKRLL 168


>gi|261749200|ref|YP_003256885.1| DNA polymerase III epsilon chain [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497292|gb|ACX83742.1| putative DNA polymerase III epsilon chain [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 255

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 69/187 (36%), Gaps = 8/187 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FDIE TG++   DRIIEI  +++  + ++ ++T+   + P      P++  +HGI DE 
Sbjct: 11  FFDIEATGVNIGKDRIIEISILKIFPNGNQEDKTW--LIFPE-IPIPPKSTAIHGIKDED 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +  F  +    +      +      N       +   L+      +   + ID   I
Sbjct: 68  VAGQLPFKDVAIHIFRMIENADLAGYNSNRFDIPILVEEMLRAGISFDIKKHKTIDVQVI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +  P       S   +Y    +    H +  D+    ++ +  +     +    K+  
Sbjct: 128 FHKMEP----RTLSAAYKYYCKKNLIKAHSSKADTFATYEILLAQLEKYQDLKQDVKSLN 183

Query: 190 DRFFKEE 196
               ++ 
Sbjct: 184 QFSHQKN 190


>gi|220907711|ref|YP_002483022.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
 gi|219864322|gb|ACL44661.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
          Length = 829

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 50/173 (28%), Gaps = 4/173 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFD+ETTG     D +IE+ A+ L  + +    F  ++            +      
Sbjct: 460 RLVVFDVETTGFSGAADEVIELAAIALE-HGQIREEFNRYIR---NTVPVGETQQVHGYS 515

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +         +           Q A  + HN  FD+  + A  +R+  +   P       
Sbjct: 516 DDFLATHGQPAATVFREFCEFSQGAVLVGHNLGFDIKMVTAHARRVGIEFPSPRWEDTLN 575

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              R     +                          +  L +  + ++  G  
Sbjct: 576 LAHRFIQSENYKLATLASSLNLSATPTHRASDDTRTTVALLEAILPLLDSGRT 628


>gi|312862610|ref|ZP_07722851.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus vestibularis F0396]
 gi|311101870|gb|EFQ60072.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus vestibularis F0396]
          Length = 1464

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 6/193 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 426 YVVFDVETTGLSAVHNDLIQIAASKMHKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDN 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +  EF +F        +AHNA FDVGF+NA  +R     +    I     
Sbjct: 484 HVKGAKPLVQVLQEFQEFCQG--TVLVAHNATFDVGFMNANYERHQLPTISQPVIDTLEF 541

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                    R+ L  L KR+G+     H + + A     LL      +       N    
Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALDHHHMANYDAEATGRLLFIFIKDVFDKHGLTNLEQL 601

Query: 187 TNEDRFFKEEKKT 199
             E       KK+
Sbjct: 602 NTELVSEDSYKKS 614


>gi|304406903|ref|ZP_07388557.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
           curdlanolyticus YK9]
 gi|304343890|gb|EFM09730.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
           curdlanolyticus YK9]
          Length = 957

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 6/177 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  V D+ETTG  ++ D +I+IG V L +      TF  F+ P      P   +L GIT
Sbjct: 1   MKFAVLDLETTGHQAE-DEMIQIGIVMLDEELNVTDTFSSFVRPAT-DIPPFITQLTGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E + D PS   + ++      +  A  +AHN  FD  F+N  L R    P    R+   
Sbjct: 59  NEMVADAPSVEDVLTDVVKLLGD--AVLVAHNVGFDAHFMNRALDRCGYSPFTGRRLDTI 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             +           L ++ + +GIT     KH A  D+   + ++   +     +  
Sbjct: 117 DLLRMLYPTLPSYQLGAVSEAFGITH--ERKHQADSDAEATAMLFAHCVHKLRDLPL 171


>gi|89890044|ref|ZP_01201555.1| DNA polymerase III [Flavobacteria bacterium BBFL7]
 gi|89518317|gb|EAS20973.1| DNA  polymerase III [Flavobacteria bacterium BBFL7]
          Length = 1450

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 68/230 (29%), Gaps = 19/230 (8%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R+I+I      +           + P+G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPYTDVDNWPRVIQIAWQLHDEMGNLIEHKDYLVKPDGFDIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A ++HGI+      +          ++    +    +  N KFD+    AE +R      
Sbjct: 62  AERIHGISTALADQQGVPLEEMLSEFNIALSKAKFVVGQNLKFDLNVTGAEFERTQIAND 121

Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                +                           +   ++         H A  D    + 
Sbjct: 122 LQEIPVLDTCTEHTAQLCQIPGGRGGKFKLPTLTELHQFLFNQPFGEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +++++             +D F + +++    I  +        + + +
Sbjct: 182 CFLELIRKQQYSKQQLDVADDYFVRFQQQNPAPIRPVGITHINLKKASDQ 231


>gi|227496849|ref|ZP_03927115.1| possible DNA polymerase III subunit epsilon [Actinomyces
          urogenitalis DSM 15434]
 gi|226833644|gb|EEH66027.1| possible DNA polymerase III subunit epsilon [Actinomyces
          urogenitalis DSM 15434]
          Length = 174

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 20/43 (46%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
            V D+ETTGL    D I+EIG V         RT+   + P 
Sbjct: 49 YAVVDLETTGLSPATDAILEIGLVLTAPDGTPQRTWSTLINPG 91


>gi|50915026|ref|YP_060998.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10394]
 gi|73919253|sp|Q5X9U8|DPO3_STRP6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|50904100|gb|AAT87815.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10394]
          Length = 1465

 Score = 62.3 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+      ++   F DF  +  +  +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKDARE 592


>gi|227540116|ref|ZP_03970165.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227239977|gb|EEI89992.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 1474

 Score = 62.3 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 69/230 (30%), Gaps = 19/230 (8%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            I+FD ETTGL  + D          R I+I      D           + P+G     +
Sbjct: 2   YIIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDDMGNMVEHADFLIAPDGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           + K+HGI+ E  +++          ++    +    +  N  FD+  +  E  R   +  
Sbjct: 62  SEKIHGISTELAQERGIPIQEALVRFNEALAKAKFVVGQNIGFDLNIMGCEFYRYGVESP 121

Query: 119 DPSRIIDTLSIARRKHP---------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                +                      +    +    Y   +     H A  D    + 
Sbjct: 122 MAEMPVLDTCTEVTAELLKLPGGRGGRFKLPNLTELHTYLFGVPFAEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +++++          + +   F + + +    I  +        + + E
Sbjct: 182 CFLELVRLEVFTLDQLQQDTGYFVEFKTQNPGPIETVGLQHLNLKKASDE 231


>gi|217076887|ref|YP_002334603.1| DNA polymerase III PolC-type [Thermosipho africanus TCF52B]
 gi|217036740|gb|ACJ75262.1| DNA polymerase III PolC-type [Thermosipho africanus TCF52B]
          Length = 186

 Score = 62.3 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 11/176 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPE 58
           M+ +N     V D ETTGL+    DRIIEI  V +       +  +   + PN R     
Sbjct: 1   MLDENV--YCVMDTETTGLNPYFGDRIIEIAIVPVYKNKIVKKWIYHSLVNPNIR-IPAL 57

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             K+HGI+++ + D PS  +I S        +   ++ HNA  D+ FI+   + I + P+
Sbjct: 58  TEKIHGISNDAITDAPSLENIISNVRA--YAKGTIFVMHNAYVDLSFIDIATKEIGEFPI 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +   I          +     +           I+ +  H AL D+ L + V++K+
Sbjct: 116 NFRYIDTLEISQVLYNKKRSLESL----VKEFKIADKVPHRALEDAILTAKVFLKL 167


>gi|21929661|gb|AAM81963.1|AF445377_1 DNA polymerase I-like protein B [Trypanosoma brucei]
          Length = 1404

 Score = 62.3 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+ K R +VFDIE+TGL++  D IIE+ A           +F   + P  R   P++  +
Sbjct: 757 RRRKYRLVVFDIESTGLNTATDAIIEVAAF----DPVEGTSFSSLVNPQ-RPIPPQSTAI 811

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE 89
           H ITD  ++  P  S +   F  +   
Sbjct: 812 HHITDSMVQGAPRLSEVTQAFARYLRL 838


>gi|71755261|ref|XP_828545.1| mitochondrial DNA polymerase I protein B [Trypanosoma brucei
           TREU927]
 gi|70833931|gb|EAN79433.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
           brucei]
 gi|261334421|emb|CBH17415.1| conserved hypothetical protein, conserved [Trypanosoma brucei
           gambiense DAL972]
          Length = 1404

 Score = 62.3 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+ K R +VFDIE+TGL++  D IIE+ A           +F   + P  R   P++  +
Sbjct: 757 RRRKYRLVVFDIESTGLNTATDAIIEVAAF----DPVEGTSFSSLVNPQ-RPIPPQSTAI 811

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE 89
           H ITD  ++  P  S +   F  +   
Sbjct: 812 HHITDSMVQGAPRLSEVTQAFARYLRL 838


>gi|332638894|ref|ZP_08417757.1| helicase [Weissella cibaria KACC 11862]
          Length = 940

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 67/226 (29%), Gaps = 15/226 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETT   S+  RII+I AV  +   K    F   + P G +     ++L GIT  
Sbjct: 7   YAVVDLETTRTTSETGRIIQI-AVAFVQNKKIINQFSTLVNP-GEQIPRNIIQLTGITQN 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K  P F  +                  N          E   +          +    
Sbjct: 65  MVKGAPFFEDVAMTLHAMLQGTIFVAHNVNFDLPFLNAEFERVGLTALKSTALDTVPLSQ 124

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI---NFGF 185
           I     P  R    + C        H   H A  D+    ++ I ++     +       
Sbjct: 125 ILWPTAPGYRLVDMTNCLSL----EHNHPHQADSDALATGELLIAILKRAEGLPMITLQA 180

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
             +       + KTV   +L K         +      H + I +L
Sbjct: 181 LADLPLVLPRDTKTVFEKALAKNQAEPQPLPS------HLQVIDSL 220


>gi|327332247|gb|EGE73984.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL096PA3]
          Length = 584

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GIT   +
Sbjct: 21  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 77

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS S++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 78  RSAPSLSTVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 122


>gi|322517665|ref|ZP_08070529.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124]
 gi|322123697|gb|EFX95287.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124]
          Length = 1424

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 6/193 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 386 YVVFDVETTGLSAVHNDLIQIAASKMHKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDN 443

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +  EF +F        +AHNA FDVGF+NA  +R     +    I     
Sbjct: 444 HVKGAKPLVQVLQEFQEFCQG--TVLVAHNATFDVGFMNANYERHQLPTILQPVIDTLEF 501

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                    R+ L  L KR+G+     H + + A     LL      +       N    
Sbjct: 502 ARNLYPEYKRHGLGPLTKRFGVALDHHHMANYDAEATGRLLFIFIKDVFDKHGLTNLEQL 561

Query: 187 TNEDRFFKEEKKT 199
             E       KK+
Sbjct: 562 NTELVSEDSYKKS 574


>gi|206561350|ref|YP_002232115.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
 gi|198037392|emb|CAR53327.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
          Length = 375

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 8/165 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  S + RI EIG VE+     +  T+   + P G+   P   +L GI+D  
Sbjct: 16  VFVDLETTGGSSADHRITEIGVVEIGPLGVS--TWTSLVNP-GQAIPPFIQQLTGISDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D P+F+S+    ++  +     ++AHNA FD GF+ AE +R                 
Sbjct: 73  VRDAPTFASLAPALFERLDG--KLFVAHNASFDRGFLRAEFERAGLTFNPDVLCT-VRLS 129

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  SR+ L++L +R+G+     ++H AL D+ LL   + ++
Sbjct: 130 RALFPRESRHGLDALIERHGLV--PAARHRALADADLLWQFWRQL 172


>gi|297205524|ref|ZP_06922920.1| DNA polymerase III [Lactobacillus jensenii JV-V16]
 gi|297150102|gb|EFH30399.1| DNA polymerase III [Lactobacillus jensenii JV-V16]
          Length = 317

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 72/219 (32%), Gaps = 12/219 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
            DIETTGL    DRI E+  +++ +       +   +  P   K      KL+GI +  +
Sbjct: 38  LDIETTGLSLYRDRITELAGIKVRNGKVVAE-YSQLVKYPKDNKVPRFITKLNGIDEALI 96

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                        +  F       + +N  FD+ FI    ++     L  + I       
Sbjct: 97  LANGMPVKEAITEFRNFIG-GDVIVGYNVNFDLNFIYDLWEKFQLKKLSNNYIDVLHFSR 155

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
                 S N L    +R GI+      H  L DS     V+              +  + 
Sbjct: 156 VFFKKESHNRLLDCIRRLGIS--ESEAHRGLKDSLDTKAVFDIY-RKQFTPEMLNEVKDS 212

Query: 191 RFFKEEKKTVPNISLLKRDKPLFT------RITKEELDE 223
                  + +P   L+KR+            + KEEL+ 
Sbjct: 213 LKSCVLTEEIPFEYLIKRNPLKNKTVVFAGTVNKEELEL 251


>gi|11498577|ref|NP_069805.1| DNA polymerase III, subunit epsilon (dnaQ) [Archaeoglobus
          fulgidus DSM 4304]
 gi|2649627|gb|AAB90271.1| DNA polymerase III, subunit epsilon (dnaQ) [Archaeoglobus
          fulgidus DSM 4304]
          Length = 205

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61
           D+ETTGL+ K D II IGAV ++        ++   L P   K+      
Sbjct: 13 IDLETTGLNQKKDEIIAIGAVPIIGTRILAGESYYRLLRPEKFKHESMKFH 63


>gi|332161660|ref|YP_004298237.1| ribonuclease T [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325665890|gb|ADZ42534.1| ribonuclease T [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330864087|emb|CBX74161.1| ribonuclease T [Yersinia enterocolitica W22703]
          Length = 232

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFNG 90

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +         A  +AHNA FD  F+ A  +R +  
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASLK 150

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D+   + ++ +++ 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCELVN 210

Query: 177 GGSQIN 182
              ++ 
Sbjct: 211 RWKKLG 216


>gi|312195665|ref|YP_004015726.1| DNA polymerase III epsilon subunit [Frankia sp. EuI1c]
 gi|311227001|gb|ADP79856.1| DNA polymerase III, epsilon subunit [Frankia sp. EuI1c]
          Length = 615

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 57/174 (32%), Gaps = 4/174 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG       I E GAV++         F   +        P    L GITD 
Sbjct: 52  FVVFDLETTGTGPTTAEITEFGAVKVRGGEVVAE-FATLVR-ASTGIPPLITVLTGITDA 109

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P  + +   F +F        +AHNA FD+ F+ A  +R+         +     
Sbjct: 110 MLATAPPLAEVLPAFLEFIQG--TVLVAHNAGFDLSFLKAACERVGYPVPTWEHLDTARL 167

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
             R        +                 H AL D+    DV   +      + 
Sbjct: 168 ARRIVTRDESPNNKLSSLARLFRARTEPCHRALADARATVDVLHGLFERLGNLG 221


>gi|255532547|ref|YP_003092919.1| DNA polymerase III subunit epsilon [Pedobacter heparinus DSM 2366]
 gi|255345531|gb|ACU04857.1| DNA polymerase III, epsilon subunit [Pedobacter heparinus DSM 2366]
          Length = 456

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 4/103 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V DIETTG  +  + I EI  + + D  +    ++  + P G++       L GI+
Sbjct: 1   MLYAVVDIETTGGFASGNGITEIS-ILVHDGREVVEAYETLINP-GQEIPAYIETLTGIS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           +E +   P F  + +E +   ++    ++AHN  FD  FI   
Sbjct: 59  NEMVVTAPLFGGVAAEIYAMLHD--KIFVAHNVNFDFSFIKHH 99


>gi|123442415|ref|YP_001006394.1| ribonuclease T [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|166200024|sp|A1JP36|RNT_YERE8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|122089376|emb|CAL12224.1| ribonuclease T [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 215

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFNG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKKLG 205


>gi|238787143|ref|ZP_04630943.1| Ribonuclease T [Yersinia frederiksenii ATCC 33641]
 gi|238724931|gb|EEQ16571.1| Ribonuclease T [Yersinia frederiksenii ATCC 33641]
          Length = 228

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAQTDALLEIAAVTLQMNKEGWLLPDETLHFHVDPFEGANLQPEALAFNG 90

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +         A  +AHNA FD  F+ A  +R +  
Sbjct: 91  IDPTNPLRGAVSEYDALHAIFKAVRKGLKDQGCNRAIIVAHNAHFDHSFVMAAAERASLK 150

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D+   + ++ +++ 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCELVN 210

Query: 177 GGSQIN 182
              ++ 
Sbjct: 211 RWKKLG 216


>gi|149196822|ref|ZP_01873875.1| exonuclease [Lentisphaera araneosa HTCC2155]
 gi|149139932|gb|EDM28332.1| exonuclease [Lentisphaera araneosa HTCC2155]
          Length = 261

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 72/196 (36%), Gaps = 9/196 (4%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           ++ N  R IVF D+ETTGL+   DRIIEI  +++  D  +  +T    + P  +  S EA
Sbjct: 1   MKLNLQRPIVFFDLETTGLNPTEDRIIEICCIKVHPDGKRDIKT--RRVNPE-KPISSEA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            ++ GITDE +KD+P+F  +    + FF   +                   +        
Sbjct: 58  SEITGITDEDVKDEPTFKQMAKGIYKFFEGCDISGYNIMRFDLRVLTEEFKRAGISFDAS 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              ++D   I  +K P           R+         H A  D     DV    +    
Sbjct: 118 AHDLVDVQRIFHKKEP----RTLEAALRFYCKKDLEGAHAAENDVIATIDVLEGQLDMYD 173

Query: 180 QINFGFKTNEDRFFKE 195
            +        +    E
Sbjct: 174 DLENDMAKLAEYCKDE 189


>gi|289426266|ref|ZP_06428012.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187]
 gi|289153431|gb|EFD02146.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187]
          Length = 584

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GIT   +
Sbjct: 21  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 77

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS S+I   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 78  RSAPSLSAILPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 122


>gi|332306913|ref|YP_004434764.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174242|gb|AEE23496.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 251

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+ K D I+ IG V +     +  +     + P+    S +++ +HGIT  
Sbjct: 61  VALDFETTGLNPKTDSIVSIGLVAMTTQRIRCAQAQHWIIKPDTELKS-KSVVIHGITHS 119

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            + D P+F+ +  E  +         +AH+   +  F+N+ +++   + +    
Sbjct: 120 DVADAPTFNRVLDELLEHLQG--KVVVAHHKDIESRFLNSAMKQYIGEEIVFPC 171


>gi|327452827|gb|EGE99481.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL092PA1]
          Length = 587

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GIT   +
Sbjct: 24  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 80

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS S++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 81  RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 125


>gi|315108203|gb|EFT80179.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA2]
          Length = 584

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GIT   +
Sbjct: 21  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 77

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS S++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 78  RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 122


>gi|315085964|gb|EFT57940.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA3]
          Length = 584

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GIT   +
Sbjct: 21  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 77

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS S++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 78  RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 122


>gi|315080369|gb|EFT52345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL078PA1]
          Length = 597

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GIT   +
Sbjct: 34  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 90

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS S++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 91  RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 135


>gi|314990240|gb|EFT34331.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA3]
          Length = 604

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GIT   +
Sbjct: 41  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 97

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS S++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 98  RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 142


>gi|314987763|gb|EFT31854.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA2]
          Length = 587

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GIT   +
Sbjct: 24  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 80

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS S++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 81  RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 125


>gi|314968043|gb|EFT12142.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA1]
          Length = 584

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GIT   +
Sbjct: 21  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 77

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS S++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 78  RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 122


>gi|314960311|gb|EFT04413.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA2]
          Length = 604

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GIT   +
Sbjct: 41  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 97

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS S++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 98  RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 142


>gi|313827785|gb|EFS65499.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA2]
          Length = 590

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GIT   +
Sbjct: 27  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 83

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS S++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 84  RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 128


>gi|313823175|gb|EFS60889.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA2]
 gi|313833843|gb|EFS71557.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL056PA1]
 gi|314919771|gb|EFS83602.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA3]
          Length = 604

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GIT   +
Sbjct: 41  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 97

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS S++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 98  RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 142


>gi|313818253|gb|EFS55967.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA2]
          Length = 597

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GIT   +
Sbjct: 34  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 90

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS S++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 91  RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 135


>gi|313815838|gb|EFS53552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA1]
 gi|314931784|gb|EFS95615.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL067PA1]
 gi|314956043|gb|EFT00441.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA1]
 gi|314958449|gb|EFT02552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA1]
 gi|314976217|gb|EFT20312.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL045PA1]
 gi|315088618|gb|EFT60594.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA1]
 gi|327451091|gb|EGE97745.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA3]
 gi|328753779|gb|EGF67395.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL020PA1]
 gi|328760388|gb|EGF73957.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL099PA1]
          Length = 590

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GIT   +
Sbjct: 27  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 83

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS S++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 84  RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 128


>gi|313809712|gb|EFS47433.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA1]
 gi|314915265|gb|EFS79096.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA4]
 gi|314978176|gb|EFT22270.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA2]
 gi|314983574|gb|EFT27666.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA1]
 gi|315098227|gb|EFT70203.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA2]
 gi|327330574|gb|EGE72320.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL097PA1]
 gi|327442625|gb|EGE89279.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA2]
 gi|327445348|gb|EGE92002.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA2]
          Length = 597

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GIT   +
Sbjct: 34  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 90

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS S++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 91  RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 135


>gi|313791823|gb|EFS39934.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA1]
          Length = 597

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GIT   +
Sbjct: 34  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 90

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS S++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 91  RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 135


>gi|313764773|gb|EFS36137.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA1]
 gi|313807207|gb|EFS45694.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA2]
 gi|313813245|gb|EFS50959.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA1]
 gi|313820015|gb|EFS57729.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA1]
 gi|313825546|gb|EFS63260.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA1]
 gi|313830622|gb|EFS68336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL007PA1]
 gi|315096369|gb|EFT68345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL038PA1]
 gi|315101083|gb|EFT73059.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA1]
 gi|327325880|gb|EGE67670.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL096PA2]
 gi|328753125|gb|EGF66741.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA1]
 gi|328759130|gb|EGF72746.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA2]
 gi|332675138|gb|AEE71954.1| hypothetical protein PAZ_c07700 [Propionibacterium acnes 266]
          Length = 587

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GIT   +
Sbjct: 24  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 80

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS S++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 81  RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 125


>gi|289426896|ref|ZP_06428622.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165]
 gi|295130296|ref|YP_003580959.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Propionibacterium acnes SK137]
 gi|289159985|gb|EFD08163.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165]
 gi|291376452|gb|ADE00307.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Propionibacterium acnes SK137]
 gi|313772552|gb|EFS38518.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL074PA1]
 gi|313802090|gb|EFS43322.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA2]
 gi|313838422|gb|EFS76136.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL086PA1]
 gi|314918505|gb|EFS82336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA1]
 gi|314925502|gb|EFS89333.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA3]
 gi|314963121|gb|EFT07221.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA1]
 gi|314973624|gb|EFT17720.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA1]
 gi|315077585|gb|EFT49643.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA2]
 gi|315084628|gb|EFT56604.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA2]
 gi|327447777|gb|EGE94431.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA1]
 gi|327453554|gb|EGF00209.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA2]
          Length = 584

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GIT   +
Sbjct: 21  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 77

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS S++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 78  RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 122


>gi|289640817|ref|ZP_06472988.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca
           glomerata]
 gi|289509393|gb|EFD30321.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca
           glomerata]
          Length = 629

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 56/166 (33%), Gaps = 4/166 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG  + +  I EIGAV++             + P+     P    L GITD 
Sbjct: 93  FVVVDLETTGSRAADSEITEIGAVKIRGGEVLAE-LATLVRPD-APIPPFISVLTGITDA 150

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P   +    F +      +  +AHNA FD+GF+     R      D   +     
Sbjct: 151 MVATAPRIDAALPTFLE--FAHGSVLVAHNAPFDLGFLREACVRCGHPVPDWEHLDTLRI 208

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +        D                 H AL D+     V   +
Sbjct: 209 ARQVLGRDETPDHKLASLARLFPADAGPCHRALADARATVAVLHGL 254


>gi|296272299|ref|YP_003654930.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM
          7299]
 gi|296098846|gb|ADG94796.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM
          7299]
          Length = 209

 Score = 61.9 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP 50
           +  D ETTGL+ K D I+ IGAV +  +    ++TF +++ P
Sbjct: 31 YVCLDCETTGLNPKKDEILSIGAVIIKENKVLMSKTFNIYVKP 73


>gi|126665661|ref|ZP_01736642.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17]
 gi|126629595|gb|EBA00212.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17]
          Length = 483

 Score = 61.9 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 7/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D+ETTG     DRI EIG           + +Q  + P  R  SP   +L GI++ 
Sbjct: 13  FAFLDLETTGGSVATDRITEIGIQFWRAGECVGQ-WQTLVNPKTR-ISPFIEQLTGISNA 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P F  I  E     +     ++AHNA+FD GF+  E +R+ +  +        LS
Sbjct: 71  MVADAPLFEDIADELEQRLDG--VVFVAHNARFDYGFVKGEFRRLGRMFVAKVLCTVKLS 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
             R      R+++++L +R+G+      +H A+ D   +   +  ++    +    
Sbjct: 129 -RRLYPEFRRHNMDALIERHGLQ--QVQRHRAMGDVAAMLGFFEHVLAQQGEDTLE 181


>gi|282890058|ref|ZP_06298591.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500064|gb|EFB42350.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 231

 Score = 61.9 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 14/216 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ + +D ETTG+ +  D +IE+   + +      RTF+  + P G    PEA  +H IT
Sbjct: 1   MKALYYDTETTGIKADRDYVIELAVYDPVGN----RTFERLINP-GVPIPPEATAIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE + + PSF  I  EF +F +        +N +FD+ F+  E +R N++      +   
Sbjct: 56  DEMVANAPSFGEIIEEFKEFCSGDVVLIAHNNDQFDIHFLRNEFKRSNQELPPWKFLDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
               R ++   R+ L  L   YGI     + H AL D  +L  V+  M+           
Sbjct: 116 KWARRYRNDLPRHTLQFLRGIYGIA--ENNAHRALDDVIVLHQVFSAMLD-------DLS 166

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
             E      + K + ++   K       ++    + 
Sbjct: 167 IAEAYALMNQPKDIQHMPFGKHQGMPLKQVPASYIQ 202


>gi|294660232|ref|NP_852876.2| DNA polymerase III subunit alpha polC/Gram positive-type
           [Mycoplasma gallisepticum str. R(low)]
 gi|284811887|gb|AAP56444.2| DNA polymerase III alpha subunit polC/Gram positive-type
           [Mycoplasma gallisepticum str. R(low)]
 gi|284930337|gb|ADC30276.1| DNA polymerase III alpha subunit polC/Gram positive-type
           [Mycoplasma gallisepticum str. R(high)]
          Length = 1494

 Score = 61.9 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 90/221 (40%), Gaps = 15/221 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT---------FQVFLCPNGRKNSPEA 59
            ++FDIETTGL++  ++IIEI AV +                  F+  +  N +  S   
Sbjct: 410 FVIFDIETTGLNAYYEQIIEIAAVRVKAELNVTNHQLEFVQIGKFEKLIK-NKKPLSKFT 468

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L G+ D  LKD     ++  EF +F  + +   +AHN                K    
Sbjct: 469 TQLTGLKDSDLKDAQDEKTVLEEFVNFIQK-DDVLVAHNGIDFDFIWINTKLDKYKLKPL 527

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            + ++D+L +A + +   R  L +L  + G        H A  D+ LL+   + M+    
Sbjct: 528 DNPMLDSLRLAYQLYQFKRYTLENLSLKLGYEYDKTLAHRANYDTELLAKCLMIMLSQVY 587

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
             N+    +      +++K + ++S     K    RI  E+
Sbjct: 588 AKNWRSLLD----LNDQEKLLNDLSEKSLKKAANLRINDED 624


>gi|226952584|ref|ZP_03823048.1| ribonuclease T (degrades tRNA, with exonuclease and ssDNAse
           activity) [Acinetobacter sp. ATCC 27244]
 gi|294649880|ref|ZP_06727280.1| ribonuclease T [Acinetobacter haemolyticus ATCC 19194]
 gi|226836664|gb|EEH69047.1| ribonuclease T (degrades tRNA, with exonuclease and ssDNAse
           activity) [Acinetobacter sp. ATCC 27244]
 gi|292824254|gb|EFF83057.1| ribonuclease T [Acinetobacter haemolyticus ATCC 19194]
          Length = 220

 Score = 61.9 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 16/196 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54
           +V D+ET G + + D ++EI  + ++           +FQ  + P           +   
Sbjct: 24  VVVDVETAGFNCQTDALLEIACIPIVYDEHGQFVPGPSFQAHINPFEGANLDRRSLDFIG 83

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P       + ++            +E     +  +A  + HNA FD+GF+ A + R  
Sbjct: 84  IDPFNPMRVAMAEDERSALRRIFKSLNEIRKAQHCTHAVLVGHNAHFDLGFLQAAIARSG 143

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +P                    + +  C + GI    +  H AL D+   ++++  
Sbjct: 144 TKNQNPFHSFSVFDTVTLSAVMFGQTVLARACIQAGIEFDGKEAHSALYDTQKTAELFCY 203

Query: 174 MMVGGSQINFGFKTNE 189
           ++   S         E
Sbjct: 204 ILNKLSPHLLDSLVTE 219


>gi|218130099|ref|ZP_03458903.1| hypothetical protein BACEGG_01686 [Bacteroides eggerthii DSM 20697]
 gi|317476592|ref|ZP_07935837.1| exonuclease [Bacteroides eggerthii 1_2_48FAA]
 gi|217987603|gb|EEC53931.1| hypothetical protein BACEGG_01686 [Bacteroides eggerthii DSM 20697]
 gi|316907188|gb|EFV28897.1| exonuclease [Bacteroides eggerthii 1_2_48FAA]
          Length = 256

 Score = 61.9 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 69/191 (36%), Gaps = 8/191 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +  +DRI+EI  +++  + ++ ++T +  + P       EA  +HGI DE
Sbjct: 10  VFFDLETTGTNINSDRIVEICYLKVYPNGNEESKTMR--INPEMH-IPAEASAVHGIYDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +     +     +      N           L+      +   + +D   
Sbjct: 67  DVADCPTFKEVARSIANDIEGCDLAGFNSNRFDIPVLAEEFLRADVDIDMSRRKFVDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I  +          S   ++    +    H A  D+    +V +  +    ++       
Sbjct: 127 IFHK----MEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLMSQLDRYPELQNDVAFL 182

Query: 189 EDRFFKEEKKT 199
            D     +   
Sbjct: 183 SDYSSFNKNVD 193


>gi|157736758|ref|YP_001489441.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|315635934|ref|ZP_07891196.1| exonuclease [Arcobacter butzleri JV22]
 gi|157698612|gb|ABV66772.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|315479913|gb|EFU70584.1| exonuclease [Arcobacter butzleri JV22]
          Length = 202

 Score = 61.9 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 3/168 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            + FD ETTGL+ K D II IGAV + D    +++ F  F+ P  +    EA+K+H I +
Sbjct: 32  YVCFDCETTGLNPKKDDIISIGAVIIKDNTIISSKKFVKFIKPKTKLQ-AEAIKVHHIRE 90

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID-T 126
             L +      +  EF +F   +            +     + +     P     + +  
Sbjct: 91  CDLNNANDIDLVIEEFLEFIGNRTLVGYFLEFDISMINKYLKPKLGITLPNKTLEVSEIY 150

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                   P    DL        + I    KH A  D+ + + ++IK+
Sbjct: 151 HDYKIEIIPQGHIDLRFNSIMEELEIPSLGKHDAFNDALMTAMIFIKL 198


>gi|260909505|ref|ZP_05916208.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636353|gb|EEX54340.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 900

 Score = 61.9 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 2/107 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGL+   D I++I AV++          F VF+    R        +      
Sbjct: 518 VVFDTETTGLNVFEDDIVQIAAVKMRASCVVEGSAFNVFIKTE-RPIPAMLGDIPNPIVA 576

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            L+      +  +         ++  +AHNA FD   +   LQR   
Sbjct: 577 ELQRNTCLPAAQALQDFMQYVGDSVLLAHNADFDYNILRFNLQRYCP 623


>gi|163848275|ref|YP_001636319.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus
          J-10-fl]
 gi|222526189|ref|YP_002570660.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl]
 gi|163669564|gb|ABY35930.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus
          J-10-fl]
 gi|222450068|gb|ACM54334.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl]
          Length = 232

 Score = 61.9 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 8  RKI---VFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLH 63
          R++   V D+ETTGLD+++D +I +GAV + +      +T+   + P   +         
Sbjct: 33 REVPYTVIDVETTGLDTRHDALIAVGAVNIENGRVLLKQTWYSLIKPPPDREPSVESIRV 92

Query: 64 GI 65
            
Sbjct: 93 HH 94


>gi|327440746|dbj|BAK17111.1| Rad3-related DNA helicase [Solibacillus silvestris StLB046]
          Length = 926

 Score = 61.9 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 8/177 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +++++ +  + DIETTG      DR+I+I  V ++   +  + +  F+ P G+       
Sbjct: 1   MKESQ-KYAIVDIETTGHSPASGDRMIQIAIV-IMQGWEIVKKYSTFINP-GKPIPLFIQ 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L  ITDE +KD   F +     ++      A ++AHN  FD+ F+ AE  R        
Sbjct: 58  DLTNITDEDVKDALPFEAYADYIYELLEG--AVFVAHNTDFDLNFLQAEFNRAGLSKWHG 115

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMM 175
            +I            S    L+ L   + I    +HR+   AL  ++LL   + +++
Sbjct: 116 KKIDTVELTKILFPMSLSYKLSDLANDFNILLQSAHRADDDALATAYLLKHCWEELL 172


>gi|217973787|ref|YP_002358538.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223]
 gi|217498922|gb|ACK47115.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223]
          Length = 300

 Score = 61.9 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 3/166 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D ETTGL +  D+IIEI A++    S  +  F+  + PN +  S +   + GIT+ 
Sbjct: 19  FIALDAETTGLSADVDKIIEIAAIKFDLLSNDHPVFEALINPNVK-VSRKITSITGITNA 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D+ +F+ I  +   F  +     +A+NAKFD GF++ E   +     +       L+
Sbjct: 78  MLADQETFTDIAQDLKQFIGD--LPIVAYNAKFDKGFLDTEFANVGIILNNHYHCALNLA 135

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            A    P+ +    +      +  +HR+K  A+    +     + +
Sbjct: 136 KAAFNLPNYKLATVAEHCSIPLNEAHRAKADAVAAGRVFMCAAVTL 181


>gi|297808725|ref|XP_002872246.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318083|gb|EFH48505.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 316

 Score = 61.9 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 62/181 (34%), Gaps = 13/181 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D+ETTGL+ K +RIIEI A +L     +  TFQ  + P     +   +         
Sbjct: 112 IVSDLETTGLNRKRERIIEIAAQDLAGGGYS--TFQTLVNPGDVPVTNTDIHGIRTDMVC 169

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124
             + P    +   F  +   +         +AHN K                 +  + ++
Sbjct: 170 RPEVPRMEELIPIFLQYVESRQKPGGYVMLVAHNGKSFDFRFLINEFNRCSYEIPHNWLL 229

Query: 125 DTLSIARRKHPSSRNDLNSL------CKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                  R+H  S +            + +         H AL D  LLS V+ K+ +  
Sbjct: 230 LDSLPLGREHMKSLDPTGKPKASLKVLQEHYSLTREGDAHRALSDVLLLSKVFQKLTIDL 289

Query: 179 S 179
            
Sbjct: 290 K 290


>gi|238757732|ref|ZP_04618915.1| Ribonuclease T [Yersinia aldovae ATCC 35236]
 gi|238703975|gb|EEP96509.1| Ribonuclease T [Yersinia aldovae ATCC 35236]
          Length = 226

 Score = 61.9 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAKTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFNG 90

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +         A  +AHNA FD  F+ A  +R +  
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNANFDHSFVMAAAERASLK 150

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D+   + ++ +++ 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCELVN 210

Query: 177 GGSQIN 182
              ++ 
Sbjct: 211 RWKKLG 216


>gi|325571082|ref|ZP_08146654.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
 gi|325156167|gb|EGC68353.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
          Length = 1449

 Score = 61.9 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
            IVFD+ETTGL +  D IIE+ AV +   +    +F  F+ P  
Sbjct: 423 YIVFDVETTGLSAVYDTIIELAAVRMHKGNVEG-SFDEFIDPGH 465


>gi|237718360|ref|ZP_04548841.1| DNA Pol III Epsilon Chain [Bacteroides sp. 2_2_4]
 gi|229452293|gb|EEO58084.1| DNA Pol III Epsilon Chain [Bacteroides sp. 2_2_4]
          Length = 243

 Score = 61.9 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 8/191 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +   DRI+EI  +++  + ++  +T +  + P        +  +HGI D 
Sbjct: 10  VFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTLR--INPEMH-IPEASSAIHGIYDA 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +           +      N           L+      +   + +D   
Sbjct: 67  DVVDCPTFKEVAKNIARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMTKRKFVDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I  +          S   ++    +    H A  D+    +V    +   S +       
Sbjct: 127 IFHK----MEQRTLSAAYKFYCDKNLEDAHTAEADTRATYEVLKAQLDRYSDLQNDIAFL 182

Query: 189 EDRFFKEEKKT 199
            D     +   
Sbjct: 183 ADYSSFSKNVD 193


>gi|291561902|emb|CBL40706.1| exonuclease, DNA polymerase III, epsilon subunit family
           [butyrate-producing bacterium SS3/4]
          Length = 247

 Score = 61.9 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 83/199 (41%), Gaps = 7/199 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG+ +++++I EIG V+++D  +T  T+   + P+ R+     ++L GITD+
Sbjct: 9   YVALDLETTGIGARHEKITEIGMVKVIDG-ETTDTYHTMVNPH-REIPKRIVELTGITDD 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    I  E       ++   + H   FD GF+        +           L 
Sbjct: 67  MVKDAPGIEEILDEVLA--FTEDLPLLGHQIIFDYGFLVQAAVNQKRKFEKYGVDTLKLC 124

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +N   +        ++  + H AL D++   ++Y ++     +      T 
Sbjct: 125 RYLMPGEEKKNLSAACAYF---EVTQDTAHRALSDAYAAHNLYQELKKRFGKERPELFTA 181

Query: 189 EDRFFKEEKKTVPNISLLK 207
           +   +K +K+   +    +
Sbjct: 182 KMLQYKAKKERTASKRQKE 200


>gi|160891921|ref|ZP_02072924.1| hypothetical protein BACUNI_04379 [Bacteroides uniformis ATCC 8492]
 gi|270296413|ref|ZP_06202613.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317480391|ref|ZP_07939491.1| exonuclease [Bacteroides sp. 4_1_36]
 gi|156858399|gb|EDO51830.1| hypothetical protein BACUNI_04379 [Bacteroides uniformis ATCC 8492]
 gi|270273817|gb|EFA19679.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316903469|gb|EFV25323.1| exonuclease [Bacteroides sp. 4_1_36]
          Length = 256

 Score = 61.9 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 66/173 (38%), Gaps = 8/173 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +  +DRI+EI  +++  + ++ ++T  + + P       EA  +HGI D 
Sbjct: 10  VFFDLETTGTNINSDRIVEICYLKVYPNGNEESKT--MRINPE-MPIPAEASAVHGIYDA 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +     +     +      N           L+      +   + +D   
Sbjct: 67  DIADCPTFKEVARNIANDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMSRRKFVDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           I  +          S   ++    +    H A  D+    +V +  +    ++
Sbjct: 127 IFHK----MEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLMSQLDRYPEL 175


>gi|313673170|ref|YP_004051281.1| DNA polymerase iii, epsilon subunit [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939926|gb|ADR19118.1| DNA polymerase III, epsilon subunit [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 226

 Score = 61.9 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 5/164 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETTGLD    +II + AV++  +      + VF+ P G+   PE++K HGITDE +
Sbjct: 46  VVDTETTGLDINTAKIINLAAVKIKGFKII-DYYNVFINP-GKSIDPESIKWHGITDEMV 103

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KDKP    +  EF  F  +  +  + H+ KFDV  I+ EL       L    +       
Sbjct: 104 KDKPFVVEVMPEFVKFIRK--SVIVGHHIKFDVDMISKELMETFGCSLKQKCLDTMFIYT 161

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           R     + +            +    +H AL D+   ++V+ KM
Sbjct: 162 RGIAKKNDHVGLDFLLDL-YKVRCNGRHTALGDAMATAEVFNKM 204


>gi|325524698|gb|EGD02688.1| putative DNA polymerase/helicase [Burkholderia sp. TJI49]
          Length = 374

 Score = 61.9 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  S   RI EIG VE+     +  T+   + P G+   P   +L GI++  
Sbjct: 16  VFVDLETTGGSSVEHRITEIGVVEIGPLGVS--TWTSLVNP-GQSIPPFIQQLTGISEAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+S+    ++  +     ++AHNA FD GF+ AE +R                 
Sbjct: 73  VRDAPSFASLAPALFERLDG--KLFVAHNASFDRGFLRAEFERAGLAFNPDVLCT-VRLS 129

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  SR+ L++L +R+G+     ++H AL D+ LL   +  +
Sbjct: 130 RALFPRESRHGLDALIERHGLV--PAARHRALADADLLWQFWRHL 172


>gi|253573313|ref|ZP_04850656.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846841|gb|EES74846.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 247

 Score = 61.9 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 5/173 (2%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           VFD+ETTG      D I+  GA+++     T+  +     P  +      ++L GIT E 
Sbjct: 65  VFDLETTGFHYHYGDEILSFGAIKVEGERITDEVYYSLAKPACQ-IPERIIELTGITPEM 123

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +  PS      EF  F +++                               R++DT+ I
Sbjct: 124 AQSAPSLLEALREFMAFVDDRVLVAHGSAH---DKAFLDVALWKTTKAHLGHRVLDTMMI 180

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           AR+  P  R   +         I    +H AL DS + + ++  ++    + N
Sbjct: 181 ARKLEPDRRISGSLDEWLAVYEIPVTKRHHALEDSKMTAQLWTALIQRLKEQN 233


>gi|293380779|ref|ZP_06626825.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Lactobacillus crispatus 214-1]
 gi|290922665|gb|EFD99621.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Lactobacillus crispatus 214-1]
          Length = 318

 Score = 61.9 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 56/160 (35%), Gaps = 3/160 (1%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIETTGL    DRIIE+G V++ +    ++ +   +  +   + P  +       E   
Sbjct: 36  LDIETTGLYPYRDRIIELGGVKVRNGQIVDQ-YTNLVKFSKNNSVPAFITKLNGITEEQI 94

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
            K    +  +         +   I +N  FD+ F+    Q+     LD   +        
Sbjct: 95  VKEGIPAEQAIREFREFIGDDVIIGYNVNFDLNFLYDLSQKYGLPVLDNDYVDVLRLART 154

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                  N L    +R GI       H  L DS     VY
Sbjct: 155 YYPRERHNRLLDCMQRAGIA--QVEAHHGLQDSLDTIKVY 192


>gi|317051245|ref|YP_004112361.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
 gi|316946329|gb|ADU65805.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
          Length = 206

 Score = 61.9 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 1/166 (0%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD ETTGLD  +D II IGAV +  +   T+   ++F  P            H +T +
Sbjct: 32  VSFDCETTGLDVHHDEIISIGAVRIRGNQILTSEKLELFFNPQQEMRVESIKIHHLLTCD 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P    I        N     +        V  +   +  I               
Sbjct: 92  LVDGVPLEEGIRQFLNFIGNRPLVGYYLEFDVAMVNRVLKPMLGITLPNRQIEVSGLYYD 151

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                 P    DL      + + +   +KH AL D+ + + +Y+K+
Sbjct: 152 KKIAAIPQGNVDLRFDSIMHDLDLPPFAKHDALGDAIMTAMMYVKL 197


>gi|322384417|ref|ZP_08058103.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321150775|gb|EFX44235.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 204

 Score = 61.9 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 13/179 (7%)

Query: 7   MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           MR+I  VFD+ETTGLD   D+I EI A+      +  R        +G K +PE + L G
Sbjct: 1   MREIYTVFDLETTGLDPTKDQITEIAAIRTDLIREYGRLDVRITKNSGTKLTPEIINLTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I +  ++             +             +         +L  + +  ++PS  +
Sbjct: 61  INESMMRGG---------IPEELAIPLLACFMSGSIVVAHHAPFDLSFLARYLVEPSSFV 111

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            T  +++   P     L ++ +R GI       H A+ D      ++ ++      +  
Sbjct: 112 CTRVLSKLVEPGESASLAAVAERRGIE--LTGHHRAMADVEATVKIFQQLKAEADALGI 168


>gi|253577523|ref|ZP_04854836.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843063|gb|EES71098.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 951

 Score = 61.9 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 84/214 (39%), Gaps = 7/214 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  V D ETTG +  +D II++G   +      ++ ++ F+ P G    P    L GIT
Sbjct: 1   MKYAVLDFETTG-NQSSDDIIQVGLAIIEPDRSISQVYRSFVKP-GVPIPPFITGLTGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE +KD P    +  E     N+     + HN  FD  ++ + L +         RI+DT
Sbjct: 59  DEDVKDAPELDEVMMEMVPLLND--VVLVGHNVAFDFNYLQSALDKTGYL-PFTGRILDT 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGF 185
           +   +   PS  +    +          R  H A  D+   + +++K +           
Sbjct: 116 MDFLKILFPSLTSYQLGMVAAEFEVEHERP-HQADSDALATALIFLKCLEECDRLPLLTL 174

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           +   D F  E+         + ++K      +++
Sbjct: 175 QRLADLFAGEDSDLGWFFDAMVQEKEREALPSED 208


>gi|189467072|ref|ZP_03015857.1| hypothetical protein BACINT_03455 [Bacteroides intestinalis DSM
           17393]
 gi|189435336|gb|EDV04321.1| hypothetical protein BACINT_03455 [Bacteroides intestinalis DSM
           17393]
          Length = 256

 Score = 61.5 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 8/191 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG     DRI+EI  +++  + ++  +T +  + P        A  +HGI D 
Sbjct: 10  VFFDLETTGTSINVDRIVEICYLKVHPNGNEEAKTLR--INPEMH-IPEGASAVHGIYDA 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +     +     +      N           L+      L   + +D   
Sbjct: 67  DVVDCPTFKEVARTIANDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDLSRRKFVDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I  +          S   ++    +    H A  D+    +V +  +    ++       
Sbjct: 127 IFHK----LEQRTLSAAYKFYCGKNLEDAHTAAADTQATYEVLMAQLDRYPELQNDIAFL 182

Query: 189 EDRFFKEEKKT 199
            +     +   
Sbjct: 183 AEYSSFNKNVD 193


>gi|329961134|ref|ZP_08299389.1| exonuclease [Bacteroides fluxus YIT 12057]
 gi|328532072|gb|EGF58882.1| exonuclease [Bacteroides fluxus YIT 12057]
          Length = 256

 Score = 61.5 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 68/173 (39%), Gaps = 8/173 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +  +DRI+EI  +++  + ++ ++T  + + P       E+  +HGI DE
Sbjct: 10  VFFDLETTGTNINSDRIVEICYLKVYPNGNEESKT--MRINPEMH-IPAESSAVHGIYDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +  +  +     +      N           L+      +   + +D   
Sbjct: 67  DIADCPTFKEVARKIANDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMSRRKFVDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           I  +          S   ++    +    H A  D+    +V +  +    ++
Sbjct: 127 IFHK----MEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLMAQLDRYGEL 175


>gi|27383129|ref|NP_774658.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27356303|dbj|BAC53283.1| blr8018 [Bradyrhizobium japonicum USDA 110]
          Length = 298

 Score = 61.5 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 61/228 (26%), Gaps = 9/228 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL---DYSKTN--RTFQVFLCPNGRKNSPEALKLHG 64
           I+ D ETTGLD + D IIE+G V+     D        TF  F  P+             
Sbjct: 45  ILLDTETTGLDHRKDEIIELGMVKFDYTPDGRIVGVRDTFAAFDEPSAPIPPEITAITGI 104

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
             +     +   +++ +   D                +  +   E +       +     
Sbjct: 105 TDEMVAGQRIDDAAVSAFVDDAVITIAHNSGFDRKFAERYWPVFEHKAWGCSATEIDWRE 164

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
              + A+  +  +         R         +    +     +     ++    +    
Sbjct: 165 HGFAGAQLGYLLNGTGFFHQAHRAVDDCHALLEVLDFVLPTTGAPALALLLETARRPTLR 224

Query: 185 FKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
               +  F  ++               R K  F  + +  LD+    +
Sbjct: 225 VWAEQTAFELKDSLKRRGYRWNDGSDGRPKSWFIDVNESGLDDEIAFL 272


>gi|281355577|ref|ZP_06242071.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
           BAA-548]
 gi|281318457|gb|EFB02477.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
           BAA-548]
          Length = 268

 Score = 61.5 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 72/205 (35%), Gaps = 6/205 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIE+TG+  + DRI+EI  +++     T  T +    P      P A  +HGI+D  
Sbjct: 12  VVFDIESTGVMPQRDRIVEIAVLKIFPDGHTQNTVRRL-NPE-MPIPPGATAIHGISDAD 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+F  I  + + +  + +                   +      +D  ++ID  +I
Sbjct: 70  VADCPTFLLIAEKLFRYIEDCDLAGYNITGFDIPMLEAEFKRAGFTFKVDDRKVIDAYNI 129

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             + +P       +   ++         HGA  D+    +V +  +    ++        
Sbjct: 130 FCKLYP----RTLTAAYQFFCGKELEGAHGAAADTAATFEVLLGQLEKHPELPRTVAELA 185

Query: 190 DRFFKEEKKTVPNISLLKRDKPLFT 214
           D         V      K       
Sbjct: 186 DFSDLAGPDAVDRTRRFKWSDNEVI 210


>gi|288799990|ref|ZP_06405449.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333238|gb|EFC71717.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
          Length = 163

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 70/170 (41%), Gaps = 8/170 (4%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+  +  D ET   +S+   +  IG V + +   T  +F   + P     S    K+HG+
Sbjct: 1   MKDFVAIDFET--ANSERSSVCSIGIVIVRNGVIT-DSFYSTIQPEPNYYSYWCTKVHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T    ++ P F  I+ +        N  ++AHN++FD   + A  +    D  D      
Sbjct: 58  TKSDTEESPCFHEIWKQIEPKI--GNLPFVAHNSRFDESCLKAVFRVYQMDYPDYIFFDT 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +  R       + L+++ +  G      + H AL D+   + + ++++
Sbjct: 116 LAAARRVLPHLPNHQLHTVAQECG--YCLDNHHHALADAEACAHIAMQIL 163


>gi|88855710|ref|ZP_01130373.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
 gi|88815034|gb|EAR24893.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
          Length = 417

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 73/204 (35%), Gaps = 9/204 (4%)

Query: 9   KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTGL +   DR++E+  V L         ++  + P          ++H I  
Sbjct: 6   FAVIDFETTGLFAGGHDRVVEVAVVHLDAQGTVEGRWETLVNPGRDLGP---QRIHQIRA 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P+F  I  +  D         +AHNA FD+ F+ AEL+R           + T+
Sbjct: 63  SDIVDAPAFEHIAGQLVDLLEG--RVLVAHNASFDLKFLVAELERTAAWMSTDFVSLCTM 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            +AR   P +   L   C      I     H A  D+   + +    +   +      + 
Sbjct: 121 QLAREYLPGAGRALADCCAAL--DIQLDDAHRASADAFATAQLLAAYIESEANDEIWREH 178

Query: 188 -NEDRFFKEEKKTVPNISLLKRDK 210
            +          +  N + L R  
Sbjct: 179 LDAALDHSWPTVSAENRAWLPRPP 202


>gi|322833483|ref|YP_004213510.1| ribonuclease T [Rahnella sp. Y9602]
 gi|321168684|gb|ADW74383.1| ribonuclease T [Rahnella sp. Y9602]
          Length = 238

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 77/206 (37%), Gaps = 13/206 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      + +++ T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAKTDALLEIAAITLKMDEDGWLQSDETVHFHVEPFEGAILVPEALAFNG 90

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +       +  +     N   A  +AHNA FD  F+ A  +R    
Sbjct: 91  IDPTNPLRGAVSEYEALHEIFKVIRKGMKEQNCNRAIIVAHNANFDHSFLMAAAERAGLK 150

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D+   ++++ +++ 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACISAGIVFDSSQAHSALYDTERTAELFCELVN 210

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              ++        D   ++E  +  N
Sbjct: 211 RWKRLGGWPLALSDEEVEDETASEEN 236


>gi|325285402|ref|YP_004261192.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga lytica DSM
           7489]
 gi|324320856|gb|ADY28321.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga lytica DSM
           7489]
          Length = 258

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 84/222 (37%), Gaps = 19/222 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG++   DR++EI  +++  + +K ++T+   + P       E + +HGI++E 
Sbjct: 11  FFDLETTGINVAKDRVVEISILKVYPNGNKESKTW--LVNPEMH-IPDEVVAVHGISNEK 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P+F+ +  E +    + +      +           L+      +  +  +D  +I
Sbjct: 68  VANEPTFAQLSKEIYAMIKDCDLGGYNSDRFDIPLLAEEMLRAGVDFDMKNTVSVDVQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +              ++       + H A  D++   +V    +    ++    K   
Sbjct: 128 FFK----MEKRTLEAAYKFYCNKELTNAHSAAADTNATFEVLKSQLDRYPELENDIKKLS 183

Query: 190 DRFFKE-----------EKKTVPNISLLKRDKPLFTRITKEE 220
           +   ++           ++   P  S  K        + ++E
Sbjct: 184 EFTTRKKFADFAGFIIIDQDGDPAFSFGKHKGKKVDEVLEKE 225


>gi|53728911|ref|ZP_00134639.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126207670|ref|YP_001052895.1| ribonuclease T [Actinobacillus pleuropneumoniae L20]
 gi|165975638|ref|YP_001651231.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|303250752|ref|ZP_07336948.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307251713|ref|ZP_07533617.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|166228560|sp|A3MYQ4|RNT_ACTP2 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|126096462|gb|ABN73290.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
 gi|165875739|gb|ABY68787.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|302650422|gb|EFL80582.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860799|gb|EFM92808.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 218

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 14/197 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET GL+++ D ++E+ A+ +    +     ++     + P  G   +P++LK +G
Sbjct: 21  VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +             P    +          Q A  +AHNA FD  F+ A ++RIN  
Sbjct: 81  IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQAAVKRINAK 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    +  H AL D+   ++++  M+ 
Sbjct: 141 RDPFHPFAMFDTATLAGFMYGQTVLVKACQMAKIPFDGKQAHSALYDTEKTTELFCAMVN 200

Query: 177 GGSQI-NFGFKTNEDRF 192
               +  F   ++ +  
Sbjct: 201 RLKDLGGFPLVSDSESN 217


>gi|327439003|dbj|BAK15368.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046]
          Length = 251

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPN-------GRKNSPEAL 60
            +V DIETTG  + + D+I+EI A+++  + +T   F  F+ P            + E +
Sbjct: 87  YVVVDIETTGGSAARGDKIVEIAALKIR-HGETVDLFHRFVNPEKPIKNSHIHGITNERV 145

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           K        +    +F                 ++A     +
Sbjct: 146 KDEQTISPVIHAFKAFLGDLPIVSHHIGFDWYSFLALEFFRN 187


>gi|321272267|gb|ADW80152.1| leucine-rich repeat family protein [Wolbachia endosymbiont wVitA of
           Nasonia vitripennis phage WOVitA1]
 gi|321272324|gb|ADW80206.1| leucine-rich repeat family protein [Wolbachia endosymbiont wVitB of
           Nasonia vitripennis phage WOVitB]
          Length = 258

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/30 (63%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 5   NKMRKIVFDIETTGLDSK-NDRIIEIGAVE 33
           +K R+IV D ETTGL  K   RIIEIG VE
Sbjct: 206 SKQREIVLDTETTGLSVKFGHRIIEIGCVE 235


>gi|315103201|gb|EFT75177.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA2]
          Length = 658

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GITD  +
Sbjct: 95  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-SIPASVQVLTGITDVMV 151

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS +++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 152 RSAPSLNAVLPSWSE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 196


>gi|314981011|gb|EFT25105.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA3]
 gi|315093023|gb|EFT64999.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL060PA1]
          Length = 597

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GITD  +
Sbjct: 34  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-SIPASVQVLTGITDVMV 90

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS +++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 91  RSAPSLNAVLPSWSE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 135


>gi|314966430|gb|EFT10529.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA2]
 gi|315091670|gb|EFT63646.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA4]
 gi|327327874|gb|EGE69650.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL103PA1]
          Length = 590

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GITD  +
Sbjct: 27  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-SIPASVQVLTGITDVMV 83

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS +++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 84  RSAPSLNAVLPSWSE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 128


>gi|282854298|ref|ZP_06263635.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139]
 gi|282583751|gb|EFB89131.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139]
          Length = 633

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GITD  +
Sbjct: 70  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-SIPASVQVLTGITDVMV 126

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS +++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 127 RSAPSLNAVLPSWSE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 171


>gi|257869605|ref|ZP_05649258.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
 gi|257803769|gb|EEV32591.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
          Length = 1449

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
            IVFD+ETTGL +  D IIE+ AV +   +    +F  F+ P  
Sbjct: 423 YIVFDVETTGLSAVYDTIIELAAVRMHKGNVEG-SFDEFIDPGH 465


>gi|160882256|ref|ZP_02063259.1| hypothetical protein BACOVA_00202 [Bacteroides ovatus ATCC 8483]
 gi|260173820|ref|ZP_05760232.1| DNA Pol III epsilon chain [Bacteroides sp. D2]
 gi|299146573|ref|ZP_07039641.1| exonuclease [Bacteroides sp. 3_1_23]
 gi|315922083|ref|ZP_07918323.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156112345|gb|EDO14090.1| hypothetical protein BACOVA_00202 [Bacteroides ovatus ATCC 8483]
 gi|298517064|gb|EFI40945.1| exonuclease [Bacteroides sp. 3_1_23]
 gi|313695958|gb|EFS32793.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 259

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 8/191 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +   DRI+EI  +++  + ++  +T +  + P        +  +HGI D 
Sbjct: 10  VFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTLR--INPEMH-IPEASSAIHGIYDA 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +           +      N           L+      +   + +D   
Sbjct: 67  DVVDCPTFKEVAKNIARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMTKRKFVDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I  +          S   ++    +    H A  D+    +V    +   S +       
Sbjct: 127 IFHK----MEQRTLSAAYKFYCDKNLEDAHTAEADTRATYEVLKAQLDRYSDLQNDIAFL 182

Query: 189 EDRFFKEEKKT 199
            D     +   
Sbjct: 183 ADYSSFSKNVD 193


>gi|50842208|ref|YP_055435.1| hypothetical protein PPA0720 [Propionibacterium acnes KPA171202]
 gi|50839810|gb|AAT82477.1| DNA polymerase III epsilon subunit (3'-5' exonuclease)
           [Propionibacterium acnes KPA171202]
 gi|314923288|gb|EFS87119.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL001PA1]
 gi|315107037|gb|EFT79013.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA1]
          Length = 633

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GITD  +
Sbjct: 70  VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-SIPASVQVLTGITDVMV 126

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  PS +++   + +    ++   +AHNA+FD+GF+     + +   
Sbjct: 127 RSAPSLNAVLPSWSE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 171


>gi|290343478|ref|YP_003494845.1| hypothetical protein OTV1_005 [Ostreococcus tauri virus 1]
 gi|260160893|emb|CAY39593.1| hypothetical protein OTV1_005 [Ostreococcus tauri virus 1]
          Length = 446

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 77/250 (30%), Gaps = 36/250 (14%)

Query: 9   KIVFDIETTG------------LDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
            + +D ET G            L   +D RI+ + AV+     +   TF   + P G + 
Sbjct: 8   YVAWDTETCGIPKTRVRPTRENLSKFDDARIVSLSAVKFSSRGREIDTFNRIIKPIGYQV 67

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
               +             P F + F EF +F  ++     AHN+ FD G I  EL RI  
Sbjct: 68  GATHIHGITHEYAEEHGVP-FKTAFQEFIEFIGDRCNILCAHNSLFDEGIIGHELLRIGL 126

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIK 173
           DP          +     +         L   Y         + H +L D+     VY  
Sbjct: 127 DPNKDFLDKYIFNCTHEMYKKRFLSSIKLTNLYKDIFGKEFDNAHNSLADARACGQVYPY 186

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           +M    +        +         +   I+  KR + L      EE             
Sbjct: 187 LMGNTKRELKPLPIKKVIIGASAVASAIGINQYKRPQELV-----EE------------- 228

Query: 234 NAIWDRYISS 243
             +W +Y   
Sbjct: 229 --LWKKYSPQ 236


>gi|237715177|ref|ZP_04545658.1| DNA Pol III epsilon chain [Bacteroides sp. D1]
 gi|262408870|ref|ZP_06085415.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647646|ref|ZP_06725213.1| exonuclease [Bacteroides ovatus SD CC 2a]
 gi|294810715|ref|ZP_06769363.1| exonuclease [Bacteroides xylanisolvens SD CC 1b]
 gi|298481744|ref|ZP_06999934.1| exonuclease [Bacteroides sp. D22]
 gi|229445010|gb|EEO50801.1| DNA Pol III epsilon chain [Bacteroides sp. D1]
 gi|262353081|gb|EEZ02176.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637012|gb|EFF55463.1| exonuclease [Bacteroides ovatus SD CC 2a]
 gi|294442048|gb|EFG10867.1| exonuclease [Bacteroides xylanisolvens SD CC 1b]
 gi|295087704|emb|CBK69227.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Bacteroides xylanisolvens XB1A]
 gi|298271966|gb|EFI13537.1| exonuclease [Bacteroides sp. D22]
          Length = 259

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 8/191 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +   DRI+EI  +++  + ++  +T +  + P        +  +HGI D 
Sbjct: 10  VFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTLR--INPEMH-IPEASSAIHGIYDA 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +           +      N           L+      +   + +D   
Sbjct: 67  DVADCPTFKEVAKNIARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMTKRKFVDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I  +          S   ++    +    H A  D+    +V    +   S +       
Sbjct: 127 IFHK----MEQRTLSAAYKFYCDKNLEDAHTAEADTRATYEVLKAQLDRYSDLQNDIAFL 182

Query: 189 EDRFFKEEKKT 199
            D     +   
Sbjct: 183 ADYSSFSKNVD 193


>gi|222081448|ref|YP_002540811.1| DNA polymerase III subunit epsilon [Agrobacterium radiobacter K84]
 gi|221726127|gb|ACM29216.1| polymerase epsilon subunit protein [Agrobacterium radiobacter K84]
          Length = 340

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 74/229 (32%), Gaps = 30/229 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+ +ND IIEIG V     D+        V+  L   G    PE  +L GI
Sbjct: 89  VILDTETTGLNHRNDEIIEIGLVAFTFDDFGHIGDVIGVYGGLQQPGTPIPPEITRLTGI 148

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE ++       I  +            IAHNA FD  F  A                 
Sbjct: 149 TDEMVEG----QMIDMQQVRRMVAPADLVIAHNAGFDRPFCEAFSNVFATKAW------- 197

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-----------YIKM 174
             S++     +   +   L    G        H A+ D   L +V           + ++
Sbjct: 198 ACSVSEIDWNARGFEGTKLGYLIGQAGYFHEGHRAIDDCFALLEVLDRNVGEEETPFAEL 257

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKE 219
           +    Q           F  ++               R K  +  I ++
Sbjct: 258 VRTSGQSRVRIFAEHSPFEMKDHLKGRGYRWSDGSDGRPKSWWIEIDED 306


>gi|153808235|ref|ZP_01960903.1| hypothetical protein BACCAC_02523 [Bacteroides caccae ATCC 43185]
 gi|149129138|gb|EDM20354.1| hypothetical protein BACCAC_02523 [Bacteroides caccae ATCC 43185]
          Length = 259

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 8/191 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +   DRI+EI  +++  + ++  +T +  + P        +  +HGI D 
Sbjct: 10  VFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTLR--INPEMH-IPEASSAVHGIYDA 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +           +      N           L+      +   + +D   
Sbjct: 67  DVADCPTFKEVAKNIARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMSKRKFVDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I  +          S   ++    +    H A  D+    +V    +     +       
Sbjct: 127 IFHK----MEQRTLSAAYKFYCEKNLEDAHTAEADTRATYEVLKAQLDRYPDLQNDIAFL 182

Query: 189 EDRFFKEEKKT 199
            D     +   
Sbjct: 183 ADYSSFSKNVD 193


>gi|313156971|gb|EFR56403.1| exonuclease [Alistipes sp. HGB5]
          Length = 255

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 73/200 (36%), Gaps = 9/200 (4%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           ++ N  R I+F D+ETTG+D+  DRI+EI   +++ D  +  +T    L P       EA
Sbjct: 1   MKLNLKRPIIFFDLETTGVDTAKDRIVEISMAKIMPDGEEIVKT--RKLNPEMH-IPEEA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGITDE +KD P+F+ +      F    +      N       +   L+        
Sbjct: 58  TAIHGITDEDVKDCPTFAQVAKSLEQFIRGCDFGGFNSNRFDLPVLVEEFLRAGVDVDFK 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             + ID  +I  +              ++         H A  D+    +V    +    
Sbjct: 118 RRKFIDVQNIFHK----KEQRTLVAAYKFYCDKDLDDAHSAEADTLATYEVLKAQLERYP 173

Query: 180 QINFGFKTNEDRFFKEEKKT 199
            +        +   + E   
Sbjct: 174 DLENDIDKLAEFSTRAETAD 193


>gi|239631939|ref|ZP_04674970.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526404|gb|EEQ65405.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 309

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           IR+     IV DIETTGL S +D II++ A+++ +      TF  ++ P+        + 
Sbjct: 38  IRRKLYDYIVLDIETTGLSSVSDDIIQLSALKVKEDKVI-DTFDSYVKPST-SIPENVVY 95

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           + GIT+  +++ P    I  +F      +    + HN                 + ++  
Sbjct: 96  ITGITNSTVENAPEIFEIMPKFVS--FTEGMPLVGHNIIR-FDIPFIVNNGFYYEDIEAL 152

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                        P     L +L + +G      S H AL D      VY  +
Sbjct: 153 DTWRLAKNKDFPEPLKNLKLPTLKEYFG---ISGSSHNALDDCKTTITVYRHL 202


>gi|190149453|ref|YP_001967978.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307260640|ref|ZP_07542332.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|307262772|ref|ZP_07544399.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|189914584|gb|ACE60836.1| DNA polymerase III, epsilon subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306869717|gb|EFN01502.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306871917|gb|EFN03634.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 218

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 14/197 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET GL+++ D ++E+ A+ +    +     ++     + P  G   +P++LK +G
Sbjct: 21  VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +             P    +          Q A  +AHNA FD  F+ A ++RIN  
Sbjct: 81  IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQAAVKRINAK 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    +  H AL D+   ++++  M+ 
Sbjct: 141 RDPFHPFAMFDTATLAGFMYGQTVLVKACQMAKIPFDDKQAHSALYDTEKTTELFCAMVN 200

Query: 177 GGSQI-NFGFKTNEDRF 192
               +  F   ++ +  
Sbjct: 201 RLKDLGGFPLVSDSESN 217


>gi|300934175|ref|ZP_07149431.1| putative exonuclease [Corynebacterium resistens DSM 45100]
          Length = 214

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
          I+ D+ETTGL+ KN RIIE+  + + D      + +  L P     S     L GIT+  
Sbjct: 18 IIIDVETTGLEPKNHRIIEVATLTVRDAQPI-NSQRWLLNPEDH-ISEFITDLTGITNAH 75

Query: 70 LKDKPSFSSIFSEFWDFFNE 89
          +   P+F S+  E     N 
Sbjct: 76 VAKCPTFRSVAEEIMSVLNP 95


>gi|319950676|ref|ZP_08024577.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4]
 gi|319435659|gb|EFV90878.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4]
          Length = 547

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 64/169 (37%), Gaps = 4/169 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG     D I EIGAV +    +       F+  +G        +L GI  E
Sbjct: 38  FVVVDLETTGTRPGGDEITEIGAVRIRGG-EVQAELSTFVSIDGV-LPGHISRLTGIAPE 95

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   PS   + + F +    + A  +AHNA+FD+GF+ A          DP  +     
Sbjct: 96  DLVGAPSLGEVMATFLE--FSRGAVLVAHNARFDLGFLRAAAAATGHRWPDPPSVCTLAL 153

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             R  H               +  +    H AL D+    DV   ++  
Sbjct: 154 ARRVLHRGETRGHRLGVLAAHLGATVEPNHRALQDARATVDVLHALISR 202


>gi|163787973|ref|ZP_02182419.1| DNA Pol III Epsilon Chain [Flavobacteriales bacterium ALC-1]
 gi|159876293|gb|EDP70351.1| DNA Pol III Epsilon Chain [Flavobacteriales bacterium ALC-1]
          Length = 258

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 74/222 (33%), Gaps = 19/222 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG++   DRI+EI  +++  +  +  +T+   + P       E   +HGI+D  
Sbjct: 11  FFDLETTGINISKDRIVEISILKVHPNGKENTKTW--VVNPE-MPIPAEVTAIHGISDAD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + DKP+F  +  E ++   + +      N            + + +  +D          
Sbjct: 68  VADKPTFKELSKEIYNLIKDSDLGGFNSNRFDI----PLLAEEMLRADIDFDMKGMQSID 123

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK--- 186
            +           S   ++    +    H A  D+    +V    +     +    K   
Sbjct: 124 VQTIFHKMEQRTLSAAYKFYCDKNLDDAHSAEADTKATYEVLKAQLSKYEDLENDTKFLA 183

Query: 187 --------TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
                    +   F    K+     S  K        + ++E
Sbjct: 184 EFSSRKKFADFAGFLIFNKQGEECFSFGKHKGKRVVDVMEQE 225


>gi|119717352|ref|YP_924317.1| hypothetical protein Noca_3128 [Nocardioides sp. JS614]
 gi|119538013|gb|ABL82630.1| DNA polymerase III, epsilon subunit [Nocardioides sp. JS614]
          Length = 601

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 74/194 (38%), Gaps = 9/194 (4%)

Query: 11  VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG  ++    I EIGAV++         FQ  + P   +       L GI++  
Sbjct: 32  VVDLETTGGSAEGGAMITEIGAVKVRGGEVLGE-FQTLVNP-RTEIPAFIAVLTGISNSM 89

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR----IID 125
           + D P   +    F +      +  +AHNA FDVGF+    ++  +            + 
Sbjct: 90  VADAPPVEAALPAFLE--FAAGSVLVAHNAPFDVGFLRYFAEQQGRPWPGFEVVDTARLA 147

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
              ++R   P+ +    +       T +HR+   A     +L  +  ++   G       
Sbjct: 148 RRVVSRDDAPNCKLSSLAKAFGSTTTPNHRALSDARATVDVLHGLMERLGGVGVHTLEEL 207

Query: 186 KTNEDRFFKEEKKT 199
           +T   R    +++ 
Sbjct: 208 QTFSSRVSSAQRRK 221


>gi|314929290|gb|EFS93121.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL044PA1]
          Length = 597

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GITD  +
Sbjct: 34  VVDLETTGTG-EGAQITEIGAVKVRGGRVEGE-FQTLVCPTG-PIPASVQVLTGITDAMV 90

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  P  S++   + +    ++   +AHNA+FD+GF+     + N   
Sbjct: 91  RPAPPLSAVLPSWSE--FSRSTVLVAHNARFDIGFLKRAYAQHNYPW 135


>gi|313837498|gb|EFS75212.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA2]
 gi|314971705|gb|EFT15803.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA3]
 gi|328906955|gb|EGG26721.1| GIY-YIG catalytic domain protein [Propionibacterium sp. P08]
          Length = 598

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GITD  +
Sbjct: 35  VVDLETTGTG-EGAQITEIGAVKVRGGRVEGE-FQTLVCPTG-PIPASVQVLTGITDAMV 91

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  P  S++   + +    ++   +AHNA+FD+GF+     + N   
Sbjct: 92  RPAPPLSAVLPSWSE--FSRSTVLVAHNARFDIGFLKRAYAQHNYPW 136


>gi|297559415|ref|YP_003678389.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296843863|gb|ADH65883.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 339

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 59/179 (32%), Gaps = 14/179 (7%)

Query: 7   MR-----KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MR       V D+ETTGL+  +  RI+EI  V +    K    F   + P   +      
Sbjct: 16  MRAADLEYAVLDMETTGLEPREGARIVEIAVVRVRGDGKFVEEFSTLIDP---RAPVGGR 72

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           + HGI +      P+ + +     +  +   A  + HN  F+  F+      +    L  
Sbjct: 73  EFHGIGEGDTVGAPTAAQVVPRLTELLSG--AVVVGHNLDFEQRFLA---SELVPAGLPT 127

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +       A R                        +H AL D+   + +  +M+    
Sbjct: 128 GQAGLCTLRALRSQVELERYSLPKASHRLSGDWPTGQHTALGDARACAKLLAEMLTNAP 186


>gi|255030410|ref|ZP_05302361.1| DNA polymerase III PolC [Listeria monocytogenes LO28]
          Length = 459

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 344 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 401

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            +K       +   F +     +   +AHNA FD+GFIN   +
Sbjct: 402 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYE 442


>gi|261343971|ref|ZP_05971616.1| ribonuclease T [Providencia rustigianii DSM 4541]
 gi|282568361|gb|EFB73896.1| ribonuclease T [Providencia rustigianii DSM 4541]
          Length = 214

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 13/195 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + K D ++EI A+  ++ +      + T    + P  G    P AL   G
Sbjct: 20  VVIDVETGGFNPKTDGLLEIAAITLKMDNEGWLSIDETLHFHVEPFEGANLEPAALAFTG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +     +   A  +AHNA FD  F+    +R    
Sbjct: 80  IDPTNPLRGAVSEYDALHAIFKTIRKGMKNTDCNRAIMVAHNANFDHSFVMNAAERSGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI    +  HGAL D++  + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVFGQTILAKACVTAGIPFDGKQAHGALYDTNRTALLFCELVN 199

Query: 177 GGSQINFGFKTNEDR 191
              ++       E  
Sbjct: 200 KWKKLGGWPLPAESE 214


>gi|303252005|ref|ZP_07338176.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247168|ref|ZP_07529219.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302649435|gb|EFL79620.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306856306|gb|EFM88458.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 218

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 14/197 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET GL+++ D ++E+ A+ +    +     ++     + P  G   +P++LK +G
Sbjct: 21  VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +             P    +          Q A  +AHNA FD  F+ A ++RIN  
Sbjct: 81  IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQAAVKRINAK 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    +  H AL D+   ++++  M+ 
Sbjct: 141 RDPFHPFAMFDTATLAGFMYGQTVLVKACQMAKIPFDGKQAHSALYDTEKTTELFCAMVN 200

Query: 177 GGSQI-NFGFKTNEDRF 192
               +  F   ++ +  
Sbjct: 201 RLKDLGGFPLVSDSESN 217


>gi|145588723|ref|YP_001155320.1| DNA polymerase III subunit epsilon [Polynucleobacter necessarius
          subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047129|gb|ABP33756.1| Exonuclease, RNase T and DNA polymerase III [Polynucleobacter
          necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 218

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51
           +V D ETTGL+   D+II IGAV+++ +   T+   ++ + P+
Sbjct: 42 WVVIDCETTGLNVAQDQIISIGAVKIVGNQLITSERLELLVKPD 85


>gi|212723090|ref|NP_001131224.1| hypothetical protein LOC100192533 [Zea mays]
 gi|194690922|gb|ACF79545.1| unknown [Zea mays]
          Length = 315

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 9/121 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTG   ++DRIIE    +L+     N TFQ  + P     +     ++       
Sbjct: 117 VFDIETTGFSRRDDRIIEFAVRDLMGGK--NNTFQTLINPEKDVKNTYVHGINNSMLCRP 174

Query: 71  KDKPSFSSIFSEFWDFFNEQNA-----EWIAHN-AKFDVGFINAELQRINKDPLDPSRII 124
            D P F  I      +   +        W+AHN   FDV F+  E +R   +       +
Sbjct: 175 -DVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGDWLFV 233

Query: 125 D 125
           D
Sbjct: 234 D 234


>gi|242239125|ref|YP_002987306.1| ribonuclease T [Dickeya dadantii Ech703]
 gi|242131182|gb|ACS85484.1| ribonuclease T [Dickeya dadantii Ech703]
          Length = 225

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 72/204 (35%), Gaps = 13/204 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV  ++ D    + + T    + P  G   +P+AL  +G
Sbjct: 22  VVIDVETAGFNAQTDALLEIAAVTLKMDDNGWLQPDETLHFHIEPFEGAILNPDALAFNG 81

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +       +  +            +AHNA FD  F+ A  +R    
Sbjct: 82  IDPTNPLRGAVSEYEALHEIFKMVRKGIKDKGCNRGIVVAHNAAFDHSFLMAAAERCGLK 141

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + +       +  L   C    I       H AL D+   ++++ +++ 
Sbjct: 142 RNPFHPFVTFDTTSLSGLVLGQTVLAKACITADILFDSSQAHSALYDTQRTAELFCELVN 201

Query: 177 GGSQINFGFKTNEDRFFKEEKKTV 200
              ++       ED          
Sbjct: 202 RWKRLGGWPLAVEDSDNDSAVNAN 225


>gi|257785157|ref|YP_003180374.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM
          20469]
 gi|257473664|gb|ACV51783.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM
          20469]
          Length = 978

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
          +V D ETTGL  K   +IEI A +L       R FQ F+ P G     E   L  ITDE 
Sbjct: 20 VVLDTETTGLSFKKCSLIEISAAKLSGREIIER-FQTFVDP-GCPIPEEITTLTSITDED 77

Query: 70 LKDKP 74
          +K  P
Sbjct: 78 VKGAP 82


>gi|126663019|ref|ZP_01734017.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38]
 gi|126624677|gb|EAZ95367.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38]
          Length = 1512

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 76/243 (31%), Gaps = 23/243 (9%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL         D     R I+I      +           + P G     +
Sbjct: 2   YLIFDTETTGLPRSWSAPITDTDNWPRCIQIAWQLHDEMGNLIEHQDYLVKPEGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR------ 112
           A ++HGI+ E   ++    S   E ++    +    +  N  FDV  +  E  R      
Sbjct: 62  AERIHGISTELALEQGILLSEVLEKFNIALSKTKFIVGQNVGFDVNIMGCEFHRLNFGSD 121

Query: 113 ---INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              +           + L +   +    +    +   +Y         H A  D    + 
Sbjct: 122 LSKMPVLDTCTEVTANLLKLPGGRGGRFKLPTLTELHQYLFNQPFAEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
            +++++              + F    +K +  I L+        + + EE+      ++
Sbjct: 182 CFLELIKREIFTKEELDVTPEYFRSFREKNLGEIQLIGLKHINLKKAS-EEI---RARLK 237

Query: 230 TLG 232
            + 
Sbjct: 238 KIE 240


>gi|322515227|ref|ZP_08068225.1| ribonuclease T [Actinobacillus ureae ATCC 25976]
 gi|322118732|gb|EFX90938.1| ribonuclease T [Actinobacillus ureae ATCC 25976]
          Length = 218

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 78/198 (39%), Gaps = 14/198 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET GL+++ D ++E+ A+ +    +     ++     + P  G   +P++LK +G
Sbjct: 21  VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +             P    +          Q A  +AHNA FD  F+ A ++RIN  
Sbjct: 81  IDIDNPLRGAVPENIAIPEMFKMVRRAMKDQGCQRAVIVAHNATFDQAFVQAAVKRINAK 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I+   +  H AL D+   ++++  M+ 
Sbjct: 141 RDPFHPFAMFDTATLAGFMYGQTVLVKACQMAKISFDGKQAHSALYDTEKTTELFCAMVN 200

Query: 177 GGSQI-NFGFKTNEDRFF 193
               +  F   ++ +   
Sbjct: 201 RLKDLGGFPLVSDSESDA 218


>gi|46445870|ref|YP_007235.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia
          amoebophila UWE25]
 gi|46399511|emb|CAF22960.1| putative DNA polymerase III epsilon chain [Candidatus
          Protochlamydia amoebophila UWE25]
          Length = 249

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
          I KNK   I  D ETTGLD + DRIIE+ AV   D ++     +  + P        ++ 
Sbjct: 4  IEKNK--FICIDCETTGLDPQQDRIIEV-AVMCFDGNQVYAQMESLINPEC-PIPETSIA 59

Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE 93
          +H IT + +KDKP+ + +  +  +  ++    
Sbjct: 60 IHHITQDMVKDKPTINHVLPQILELISDHIII 91


>gi|321309652|ref|YP_004191981.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801496|emb|CBY92142.1| DNA polymerase III, alpha subunit, Gram-positive type (fragment)
           [Mycoplasma haemofelis str. Langford 1]
          Length = 216

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 61/188 (32%), Gaps = 3/188 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG   K   I EI   +  +  + ++ +  F+    R   P          +
Sbjct: 20  YCVLDIETTGTSYKTSEITEISIHKYRNGKRVDK-YHSFVK-ISRPLPPFIRIFTPHITD 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  +                + +  +AHN                      + IIDTL 
Sbjct: 78  ELLAREGKDLDVVIKEVKDFTKGSILVAHNGVTFDLLFLKAACIKYGLKPLSNPIIDTLR 137

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R   P+   + L  +C+R  +       H A  D  +L  V+    VG  +I    + 
Sbjct: 138 LSRSTFPNERYHTLGDVCRRMQVNYDEDRAHSADYDVDVLWQVFWNFAVGLKKIGVNLED 197

Query: 188 NEDRFFKE 195
                 + 
Sbjct: 198 GLQEANEA 205


>gi|308234286|ref|ZP_07665023.1| CRISPR-associated endoribonuclease Cas2 [Atopobium vaginae DSM
           15829]
          Length = 297

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 3/142 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++ DIET+GL+  +D+IIEIGA+ + D    +  +Q  +  +    SP   +L G+TD
Sbjct: 129 KFVILDIETSGLNETDDKIIEIGAIRICDKQVDD--YQCLIKRDSLNLSPAITQLTGLTD 186

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L ++    ++       F       + +N  FD+ FIN EL+ +N++ LD   I    
Sbjct: 187 IELANRGVNPNLALNGLKQFIGHLPV-LGYNIAFDMRFINNELRSMNEELLDNREIDVMR 245

Query: 128 SIARRKHPSSRNDLNSLCKRYG 149
            I + K       L+++ K YG
Sbjct: 246 FIKKEKMFLESYALDNVLKVYG 267


>gi|307249394|ref|ZP_07531386.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306858580|gb|EFM90644.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 218

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 14/197 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET GL+++ D ++E+ A+ +    +     ++     + P  G   +P++LK +G
Sbjct: 21  VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +             P    +          Q A  +AHNA FD  F+ A ++RIN  
Sbjct: 81  IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQAAVKRINAK 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    +  H AL D+   ++++  M+ 
Sbjct: 141 RDPFHPFAMFDTATLTGFMYGQTVLVKACQMAKIPFDGKQAHSALYDTEKTTELFCAMVN 200

Query: 177 GGSQI-NFGFKTNEDRF 192
               +  F   ++ +  
Sbjct: 201 RLKDLGGFPLVSDSESN 217


>gi|260893685|ref|YP_003239782.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
 gi|260865826|gb|ACX52932.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
          Length = 233

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 9  KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           + FD+ETTGL     D II +GAV L         F   + P  R   
Sbjct: 47 FVAFDLETTGLKPGAGDEIIALGAVRLRGNELLYPAFDQLVRPGRRVPP 95


>gi|109898818|ref|YP_662073.1| DNA polymerase III subunit epsilon [Pseudoalteromonas atlantica
           T6c]
 gi|109701099|gb|ABG41019.1| Exonuclease, RNase T and DNA polymerase III [Pseudoalteromonas
           atlantica T6c]
          Length = 251

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 4/114 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+ K D I+ IG V + +   +        + P+    + +++ +HGIT  
Sbjct: 61  VALDFETTGLNPKTDSIVSIGLVAMTVKRIRCQEAQHWIIKPDTELKT-KSVVIHGITHS 119

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            + D PSF+ +  E            +AH+   +V F+N+ L+    + +    
Sbjct: 120 DVADAPSFNRVLDELLQHLQG--KVVVAHHKDIEVRFLNSALKHYIGEEIVFPC 171


>gi|15924884|ref|NP_372418.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927468|ref|NP_375001.1| hypothetical protein SA1710 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283564|ref|NP_646652.1| hypothetical protein MW1835 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49484135|ref|YP_041359.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486713|ref|YP_043934.1| putative exonuclease [Staphylococcus aureus subsp. aureus MSSA476]
 gi|82751547|ref|YP_417288.1| DNA polymerase III alpha chain [Staphylococcus aureus RF122]
 gi|148268366|ref|YP_001247309.1| exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394428|ref|YP_001317103.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156980210|ref|YP_001442469.1| hypothetical protein SAHV_1879 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253316903|ref|ZP_04840116.1| hypothetical protein SauraC_12304 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253729653|ref|ZP_04863818.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253734998|ref|ZP_04869163.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|255006681|ref|ZP_05145282.2| hypothetical protein SauraM_09445 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257426026|ref|ZP_05602448.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428699|ref|ZP_05605094.1| exonuclease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431309|ref|ZP_05607685.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257434027|ref|ZP_05610378.1| DNA polymerase subunit III alpha [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436931|ref|ZP_05612973.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus M876]
 gi|257793752|ref|ZP_05642731.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9781]
 gi|258408894|ref|ZP_05681176.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|258421002|ref|ZP_05683933.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9719]
 gi|258422971|ref|ZP_05685870.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9635]
 gi|258430026|ref|ZP_05688396.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9299]
 gi|258443456|ref|ZP_05691798.1| DNA polymerase subunit III alpha [Staphylococcus aureus A8115]
 gi|258445314|ref|ZP_05693505.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A6300]
 gi|258447878|ref|ZP_05696012.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A6224]
 gi|258453311|ref|ZP_05701296.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A5937]
 gi|269203547|ref|YP_003282816.1| exonuclease [Staphylococcus aureus subsp. aureus ED98]
 gi|282894561|ref|ZP_06302789.1| exonuclease [Staphylococcus aureus A8117]
 gi|282904525|ref|ZP_06312410.1| exonuclease [Staphylococcus aureus subsp. aureus C160]
 gi|282906298|ref|ZP_06314150.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282909214|ref|ZP_06317030.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911519|ref|ZP_06319319.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914692|ref|ZP_06322477.1| exonuclease [Staphylococcus aureus subsp. aureus M899]
 gi|282917241|ref|ZP_06324996.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus D139]
 gi|282919729|ref|ZP_06327461.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus C427]
 gi|282925133|ref|ZP_06332793.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus C101]
 gi|282928067|ref|ZP_06335674.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A10102]
 gi|283771044|ref|ZP_06343935.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus H19]
 gi|283958655|ref|ZP_06376101.1| exonuclease [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293507769|ref|ZP_06667611.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510786|ref|ZP_06669488.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus M809]
 gi|293539326|ref|ZP_06672005.1| exonuclease [Staphylococcus aureus subsp. aureus M1015]
 gi|295407274|ref|ZP_06817073.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A8819]
 gi|295428476|ref|ZP_06821103.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296276903|ref|ZP_06859410.1| exonuclease [Staphylococcus aureus subsp. aureus MR1]
 gi|297208922|ref|ZP_06925326.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297246200|ref|ZP_06930051.1| exonuclease [Staphylococcus aureus A8796]
 gi|297590053|ref|ZP_06948693.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|300913021|ref|ZP_07130459.1| exonuclease [Staphylococcus aureus subsp. aureus TCH70]
 gi|13701687|dbj|BAB42980.1| SA1710 [Staphylococcus aureus subsp. aureus N315]
 gi|14247666|dbj|BAB58056.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21205005|dbj|BAB95700.1| MW1835 [Staphylococcus aureus subsp. aureus MW2]
 gi|49242264|emb|CAG40971.1| putative exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49245156|emb|CAG43622.1| putative exonuclease [Staphylococcus aureus subsp. aureus MSSA476]
 gi|82657078|emb|CAI81515.1| probable DNA polymerase III alpha chain [Staphylococcus aureus
           RF122]
 gi|147741435|gb|ABQ49733.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946880|gb|ABR52816.1| Exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156722345|dbj|BAF78762.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253726594|gb|EES95323.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253727180|gb|EES95909.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257271169|gb|EEV03326.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274343|gb|EEV05855.1| exonuclease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257277958|gb|EEV08614.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257280953|gb|EEV11097.1| DNA polymerase subunit III alpha [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257283720|gb|EEV13845.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus M876]
 gi|257787724|gb|EEV26064.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9781]
 gi|257840341|gb|EEV64803.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|257842950|gb|EEV67368.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9719]
 gi|257846758|gb|EEV70773.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9635]
 gi|257849620|gb|EEV73588.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9299]
 gi|257851341|gb|EEV75281.1| DNA polymerase subunit III alpha [Staphylococcus aureus A8115]
 gi|257855832|gb|EEV78756.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A6300]
 gi|257858810|gb|EEV81679.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A6224]
 gi|257864519|gb|EEV87262.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A5937]
 gi|262075837|gb|ACY11810.1| exonuclease [Staphylococcus aureus subsp. aureus ED98]
 gi|282313091|gb|EFB43489.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316367|gb|EFB46744.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus C427]
 gi|282318868|gb|EFB49223.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus D139]
 gi|282321406|gb|EFB51732.1| exonuclease [Staphylococcus aureus subsp. aureus M899]
 gi|282324528|gb|EFB54840.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282326782|gb|EFB57079.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330495|gb|EFB60012.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282590131|gb|EFB95212.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A10102]
 gi|282595081|gb|EFC00048.1| exonuclease [Staphylococcus aureus subsp. aureus C160]
 gi|282763048|gb|EFC03180.1| exonuclease [Staphylococcus aureus A8117]
 gi|283459638|gb|EFC06729.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus H19]
 gi|283471164|emb|CAQ50375.1| exonuclease [Staphylococcus aureus subsp. aureus ST398]
 gi|283789695|gb|EFC28517.1| exonuclease [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285817574|gb|ADC38061.1| DNA polymerase III polC-type [Staphylococcus aureus 04-02981]
 gi|290919861|gb|EFD96930.1| exonuclease [Staphylococcus aureus subsp. aureus M1015]
 gi|291094832|gb|EFE25100.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466417|gb|EFF08941.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus M809]
 gi|294967849|gb|EFG43879.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A8819]
 gi|295127458|gb|EFG57097.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296886412|gb|EFH25341.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297176907|gb|EFH36164.1| exonuclease [Staphylococcus aureus A8796]
 gi|297577181|gb|EFH95895.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|298695233|gb|ADI98455.1| probable DNA polymerase III alpha chain [Staphylococcus aureus
           subsp. aureus ED133]
 gi|300885799|gb|EFK81006.1| exonuclease [Staphylococcus aureus subsp. aureus TCH70]
 gi|312437640|gb|ADQ76711.1| exonuclease [Staphylococcus aureus subsp. aureus TCH60]
 gi|312830266|emb|CBX35108.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129297|gb|EFT85291.1| hypothetical protein CGSSa03_08545 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315193423|gb|EFU23820.1| hypothetical protein CGSSa00_04826 [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|329724805|gb|EGG61309.1| exonuclease [Staphylococcus aureus subsp. aureus 21172]
 gi|329731424|gb|EGG67787.1| exonuclease [Staphylococcus aureus subsp. aureus 21193]
          Length = 184

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 9/177 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI+      +  D ET   + K   I  +G V+++D   T  TF   + P     S + +
Sbjct: 1   MIQDA---FVALDFET--ANGKRTSICSVGMVKVIDSQIT-ETFHTLVNPQD-YFSQQNI 53

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPL 118
           K+HGI  E +++ P+F  +F     F  +        A +       I            
Sbjct: 54  KVHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTY 113

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             S  +   ++   ++             +G   +        + +  L   Y  + 
Sbjct: 114 FCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLT 170


>gi|241666520|ref|YP_002984604.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240861977|gb|ACS59642.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 326

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 81/238 (34%), Gaps = 30/238 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+ ++D IIEIGAV     D         ++  L    R   PE  +L GI
Sbjct: 75  VILDTETTGLNHRSDEIIEIGAVAFTFNDDGAIGDIVGIYGGLQQPSRPIPPEITRLTGI 134

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD  ++ +     I  +      E     IAHNA FD  F  A  +              
Sbjct: 135 TDAMVEGQ----LIDIQSLRTLIEPADLIIAHNAGFDRPFCEAFSKIFTGKAW------- 183

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-----------YIKM 174
             S++     +   +   L    G        H A+ D H L ++           + ++
Sbjct: 184 ACSVSEIDWSARGFEGTKLGYLVGQAGYFHEGHRAVDDCHALLEILDREQHDGESPFTEL 243

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
                +           F  ++               R K  +  + +E+L++    +
Sbjct: 244 YRASQRSRIRVFAEHSPFEMKDHLKARGYRWSDGSDGRLKSWWIEVGEEDLNDELSYL 301


>gi|307717410|gb|ADN88758.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
 gi|307717414|gb|ADN88760.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
 gi|307717416|gb|ADN88761.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
          Length = 231

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 6/194 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +   F +     +   +AHNA FD+GFIN   +++     + + +         
Sbjct: 59  SDPIDVVLQRFKE--WSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLELARFL 116

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
                 + LN+L K++   I     H A+ D+   + +  K++    +++     +    
Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDYHDSLND 174

Query: 193 FKEEKKTVPNISLL 206
           +  E          
Sbjct: 175 YMGEGDAYKRARPF 188


>gi|313884171|ref|ZP_07817937.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620618|gb|EFR32041.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 849

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 11  VFDIETTG--LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + DIETTG  LD + DRII+I A+ + +   T + + + + PN         KL GI++E
Sbjct: 7   IVDIETTGPNLD-QGDRIIQIAALIIEEGQVT-KEYDMLINPN-MPIPSHISKLTGISNE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
            ++  P  S +   +     +    ++AHN  FD+ F+       
Sbjct: 64  QVQKAPHLSQVIDLWHYRLKD--CIFVAHNINFDLRFLKQCFHHF 106


>gi|108805769|ref|YP_645706.1| hypothetical protein Rxyl_2984 [Rubrobacter xylanophilus DSM 9941]
 gi|108767012|gb|ABG05894.1| DNA polymerase III, epsilon subunit [Rubrobacter xylanophilus DSM
           9941]
          Length = 560

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 4/97 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  ++   I E+GA++L+     +R F   + P GR   P   +L GITDE
Sbjct: 33  YVVFDLETTGSSAREGGITELGALKLVRGRVVDR-FSTLVNP-GRPIEPFVARLTGITDE 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            +   P    +   F +    + +  +AHNA FD  F
Sbjct: 91  MVSGAPPAREVIPRFEE--FAEGSVLVAHNAGFDCSF 125


>gi|163848613|ref|YP_001636657.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526548|ref|YP_002571019.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl]
 gi|163669902|gb|ABY36268.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450427|gb|ACM54693.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl]
          Length = 278

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 5/176 (2%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I FD+ETTGL+ +   RI E+  +      +  R     + P  R+  P+A +++G+   
Sbjct: 16  IFFDVETTGLEIQAGHRICEVAMLRWEHGQEVGRI-NTLINPE-RELDPQAAQINGLQPA 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L + P F+ I  +       QNA  IAHN  FD  F+N EL R    P     +     
Sbjct: 74  ELNNAPLFTDIAPQVVQ--LSQNAVRIAHNLPFDESFLNMELCRAGYPPFTGPALDTLEL 131

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
             R         L +L   +G+          +L    L D ++  M+    I  G
Sbjct: 132 ARRLGIRRGSLSLAALATTFGLPAPTHRAMDDVLTLRALFDHFVNEMISFGIITLG 187


>gi|291279025|ref|YP_003495860.1| hypothetical protein DEFDS_0623 [Deferribacter desulfuricans SSM1]
 gi|290753727|dbj|BAI80104.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 247

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  V D ETTGLD +  ++I I AV+++++      + VF+ P       E++K HGITD
Sbjct: 62  KFCVIDTETTGLDFETAKLINIAAVKVVNFKIL-DIYDVFINPE-IPIPEESIKWHGITD 119

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +KDKP+ + I  +F  F  +  +  + H+  FD+  IN +L+      +    I    
Sbjct: 120 DMVKDKPTVAEILPDFLKFIRD--SVIVGHHVNFDLKMINKDLKLYYGSEIKNIWIDTMF 177

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             ++       +            +    +H AL D+   ++V+
Sbjct: 178 LYSKNILCRDDHISLDF-LLEKFNVKCIGRHTALGDALATAEVF 220


>gi|238753629|ref|ZP_04614991.1| Ribonuclease T [Yersinia ruckeri ATCC 29473]
 gi|238708181|gb|EEQ00537.1| Ribonuclease T [Yersinia ruckeri ATCC 29473]
          Length = 217

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L    +     + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAVTLKMDENGWLQRDETLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +         A  +AHNA FD  F+    +R    
Sbjct: 80  IDPSNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFVMEAAERACLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D+   ++++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACLTAGIPFDSTQAHSALYDTEQTAELFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|56478059|ref|YP_159648.1| excinuclease Cho [Aromatoleum aromaticum EbN1]
 gi|56314102|emb|CAI08747.1| Excinuclease Cho, similar to DNA polymerase III epsilon subunit
           family [Aromatoleum aromaticum EbN1]
          Length = 478

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 8/163 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             DIETTG  + +D I EI  +E+ +     R +   + P+ R       ++ GI++  +
Sbjct: 20  FVDIETTGTTASHDSITEIAIIEIGEDGV--REWSSLVRPDSR-IPDYIERMTGISNHMV 76

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P+F+ +    +D  +E    ++AHNA+FD GFI A  +R+  D              
Sbjct: 77  ADAPTFAELAETVFDRLHE--RVFVAHNARFDHGFIRAAFRRLGVDFRPKVLCT-VRLSR 133

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           R      R++L++L  R+G+     ++H AL D+  L   + +
Sbjct: 134 RLYPQERRHNLDALIARHGLE--VEAQHRALGDAQALWQFWQR 174


>gi|222152446|ref|YP_002561621.1| DNA polymerase III PolC [Streptococcus uberis 0140J]
 gi|222113257|emb|CAR40776.1| DNA polymerase III PolC-type [Streptococcus uberis 0140J]
          Length = 1465

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMYKGNII-EQFDEFIDP-GHPLSAFTTELTGITDN 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L        +  EF  F ++     +AHNA FD+GF+NA  +R     +    I     
Sbjct: 485 HLIGAKPLLQVLEEFQAFCHD--TVLVAHNASFDIGFMNANYERNGLPQITQPVIDTLEF 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEARE 592


>gi|213962149|ref|ZP_03390413.1| exonuclease [Capnocytophaga sputigena Capno]
 gi|213955155|gb|EEB66473.1| exonuclease [Capnocytophaga sputigena Capno]
          Length = 258

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 75/222 (33%), Gaps = 19/222 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG+D   DRI+EI  +++  + +K ++T+   + P        A  +HGITDE 
Sbjct: 11  FFDLETTGIDITKDRIVEISILKVYPNGNKESKTW--LVNP-TIPIPKAASDVHGITDER 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +P+F  +  +  +   + +      +           L+      L     +D  +I
Sbjct: 68  VACEPTFKELAKQIHNMIKDSDLAGYNSDRFDIPLLAEEMLRAEVDFDLGNRVSVDVQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          S   ++         H A  D++   ++    +     +    K   
Sbjct: 128 FHK----MEQRTLSAAYKFYCGKDLIDAHTASADTNATYEILKAQLDRYDSLENNIKKLS 183

Query: 190 D-----------RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           +            F     K     +  K        I  EE
Sbjct: 184 EFTYRKQIADFAGFIGYNDKGEEIFTFGKHKGKRVEDIFDEE 225


>gi|116627026|ref|YP_819645.1| DNA polymerase III PolC [Streptococcus thermophilus LMD-9]
 gi|122268369|sp|Q03MX3|DPO3_STRTD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116100303|gb|ABJ65449.1| DNA polymerase III catalytic subunit, PolC type [Streptococcus
           thermophilus LMD-9]
 gi|312277486|gb|ADQ62143.1| DNA polymerase III polC-type [Streptococcus thermophilus ND03]
          Length = 1464

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 426 YVVFDVETTGLSAVHNDLIQIAASKMHKGNIV-EQFDEFIDP-GYPLSAFTTELTGITDN 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +  EF +F     A  +AHNA FDVGF+NA  +R     +    I     
Sbjct: 484 HVKGAKPLVQVLQEFQEFCKG--AVLVAHNATFDVGFMNANYERHQLPTISQPVIDTLEF 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R+ L  L KR+G+ + H   H A  D+     +    +    +   G    
Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALDH--HHMANYDAEATGRLLFIFIKDVFE-KHGLTNL 598

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
           E    +         S +K      
Sbjct: 599 EQLNTELVSDDSYKKSRVKHATLYV 623


>gi|320531410|ref|ZP_08032377.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320136382|gb|EFW28363.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 299

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 65/205 (31%), Gaps = 4/205 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       + EIGAV++         F   + P G     +   L GIT+ 
Sbjct: 22  FVVVDLETTGGAPGARSLTEIGAVKVRGGQVLAD-FSTLVNP-GVAIPAQITMLTGITNA 79

Query: 69  FLKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +   P           W      +   +AHNA+FDVG +      +  +  +P  +   
Sbjct: 80  MVAGAPGVSTCVEAFLSWADLLADDVVLVAHNARFDVGHLRGAAAALGLEWPEPRVLDTL 139

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
               +    S   +         +    R  H AL D+    DV    +   + +     
Sbjct: 140 ALARKAWTRSEVPNHKLGTLAAFVGSRTRPSHRALDDARATVDVLHAALEVMAPLGVTHL 199

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211
            +               S L    P
Sbjct: 200 EDLATASDPVPAKRRAKSRLADALP 224


>gi|307253947|ref|ZP_07535799.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307256208|ref|ZP_07537995.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|307258402|ref|ZP_07540143.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306863151|gb|EFM95093.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306865389|gb|EFM97285.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306867586|gb|EFM99433.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 218

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 14/197 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET GL+++ D ++E+ A+ +    +     ++     + P  G   +P++LK +G
Sbjct: 21  VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +             P    +          Q A  +AHNA FD  F+ A ++RIN  
Sbjct: 81  IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQAFVQAAVKRINAK 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    +  H AL D+   ++++  M+ 
Sbjct: 141 RDPFHPFAMFDTATLAGFMFGQTVLVKACQMAKIPFDGKQAHSALYDTEKTTELFCAMVN 200

Query: 177 GGSQI-NFGFKTNEDRF 192
               +  F   ++ +  
Sbjct: 201 RLKDLGGFPLVSDSESN 217


>gi|111224492|ref|YP_715286.1| hypothetical protein FRAAL5108 [Frankia alni ACN14a]
 gi|111152024|emb|CAJ63748.1| putative DNA-directed DNA polymerase [Frankia alni ACN14a]
          Length = 580

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 73/195 (37%), Gaps = 8/195 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG  +    I EIGAV +             + P      P    + GITD 
Sbjct: 21  FVVVDLETTGTSAATSEITEIGAVRVRGGEVLAEM-STLVRP-SAGIPPMVSVITGITDA 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR----II 124
            +   P+ + +   F +    + A  +AHNA FD+GF+ A  QR    P          I
Sbjct: 79  MVATAPAEAEVVPTFLE--FARGAVLVAHNAPFDLGFLRAAAQRCGYPPPAWEHLDTLRI 136

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
               ++R + P  R    +   R      HR+   A     +L  ++ ++   G +    
Sbjct: 137 ARRLVSRDEAPDCRLASLARLFRSSTEPCHRALADARATVDVLHGLFERLGNAGVRTLEE 196

Query: 185 FKTNEDRFFKEEKKT 199
                 R    +++ 
Sbjct: 197 LHEYSARVSPAQRRK 211


>gi|325068629|ref|ZP_08127302.1| hypothetical protein AoriK_12441 [Actinomyces oris K20]
          Length = 204

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 4/176 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       + EIGAV++         F   + P G     +   L GIT+ 
Sbjct: 22  FVVVDLETTGGAPGARSLTEIGAVKVRGGQVLAE-FSTLVNP-GVAIPAQITLLTGITNA 79

Query: 69  FLKDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +   P   +    F D+      +   +AHNA+FDVG +      ++ +  +P  +   
Sbjct: 80  MVAGAPGVRTCVEAFLDWADLLADDVVLVAHNARFDVGHLRGAAAALDLEWPEPRVLDTL 139

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
               +    S   +         +    R  H AL D+    DV    +   + + 
Sbjct: 140 ALARKAWTRSEVPNHKLGTLAAFVGSQIRPTHRALDDARATVDVLHAALEVMAPLG 195


>gi|219847899|ref|YP_002462332.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM
           9485]
 gi|219542158|gb|ACL23896.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM
           9485]
          Length = 280

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 5/175 (2%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTGLD     RI E+  +       T +     + P  R+  P+A +++GI  E
Sbjct: 16  VFFDVETTGLDLQNGHRICELAMLRREHRQITGQI-NTLINPE-RELDPQASQVNGIRAE 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  +       Q A  +AHN  FD  F+N EL R    PL    +     
Sbjct: 74  DLQSAPRFAELTVQVVQ--LSQQAVRVAHNLPFDESFLNMELARAGYPPLTGPALDTLEL 131

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             R         L +L   +G+          +L  H L D  +  +        
Sbjct: 132 ARRLGIRRGSLSLGALATSFGLPTPTHRAMDDVLTLHALFDRLVAKLADYGVTTL 186


>gi|55820164|ref|YP_138606.1| DNA polymerase III PolC [Streptococcus thermophilus LMG 18311]
 gi|81561132|sp|Q5M6H0|DPO3_STRT2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|55736149|gb|AAV59791.1| DNA polymerase III alpha subunit [Streptococcus thermophilus LMG
           18311]
          Length = 1464

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 426 YVVFDVETTGLSAVHNDLIQIAASKMHKGNIV-EQFDEFIDP-GYPLSAFTTELTGITDN 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +  EF +F     A  +AHNA FDVGF+NA  +R     +    I     
Sbjct: 484 HVKGAKPLVQVLQEFQEFCKG--AVLVAHNATFDVGFMNANYERHQLPTISQPVIDTLEF 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R+ L  L KR+G+ + H   H A  D+     +    +    +   G    
Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALDH--HHMANYDAEATGRLLFIFIKDVFE-KHGLTNL 598

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
           E    +         S +K      
Sbjct: 599 EQLNTELVSDDSYKKSRVKHATLYV 623


>gi|55822053|ref|YP_140494.1| DNA polymerase III PolC [Streptococcus thermophilus CNRZ1066]
 gi|81559957|sp|Q5M1Y0|DPO3_STRT1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|55738038|gb|AAV61679.1| DNA polymerase III alpha subunit [Streptococcus thermophilus
           CNRZ1066]
          Length = 1464

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 426 YVVFDVETTGLSAVHNDLIQIAASKMHKGNIV-EQFDEFIDP-GYPLSAFTTELTGITDN 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +  EF +F     A  +AHNA FDVGF+NA  +R     +    I     
Sbjct: 484 HVKGAKPLVQVLQEFQEFCKG--AVLVAHNATFDVGFMNANYERHQLPTISQPVIDTLEF 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R+ L  L KR+G+ + H   H A  D+     +    +    +   G    
Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALDH--HHMANYDAEATGRLLFIFIKDVFE-KHGLTNL 598

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
           E    +         S +K      
Sbjct: 599 EQLNTELVSDDSYKKSRVKHATLYV 623


>gi|293390535|ref|ZP_06634869.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951069|gb|EFE01188.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 217

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET GL++K D ++E+ A+ L          ++     + P  G    PE+LK +G
Sbjct: 23  VVIDVETAGLNAKTDALLELAAITLKMDENGNLLPDQKCHFHIQPFEGANIDPESLKFNG 82

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                  +  +     + Q +  +AHNA FD GF+ A  QR+N  
Sbjct: 83  IDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNAAFDQGFLMAAAQRMNAK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    +  H AL D+   ++++  M+ 
Sbjct: 143 RNPFHPFSTFDTATLSGFMFGQTVLVKACQAAKIPFDSQQAHSALYDTERTAELFCYMVN 202

Query: 177 GGSQIN 182
              Q+ 
Sbjct: 203 HLKQLG 208


>gi|288921215|ref|ZP_06415500.1| stress protein [Frankia sp. EUN1f]
 gi|288347369|gb|EFC81661.1| stress protein [Frankia sp. EUN1f]
          Length = 622

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 7/171 (4%)

Query: 15  ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP 74
           ET+GL +  DRI+ I  V++         +   L P      P  + +HG+T E L   P
Sbjct: 2   ETSGLAADRDRILSIAVVQVGADGAVGERWTTLLDPG---CDPGPVHIHGLTRELLAGSP 58

Query: 75  SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH 134
           +F+ +  E            +AHNA FD  F+ AE  R  ++     R+   +   R   
Sbjct: 59  TFADVVDELASRLAG--RVMVAHNASFDWRFLTAEAVRAGRELPTERRMCSCVLARRLDL 116

Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           P     L ++   +   +    +H AL D+ ++++V  +M+    + +   
Sbjct: 117 PVPDFRLATIADFW--AVPFERQHDALADAMVVAEVLPRMLALAGEQDLEL 165


>gi|163791070|ref|ZP_02185490.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Carnobacterium sp. AT7]
 gi|159873626|gb|EDP67710.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Carnobacterium sp. AT7]
          Length = 939

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 7/176 (3%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V DIETTG + +  DR+I+ G V L      +R F   + P       +   L G+++
Sbjct: 7   YAVVDIETTGGNVASGDRMIQFGCVLLEGDQVVHR-FATNINP-LTSIPKQIEHLTGLSN 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +   P F  I +  ++  +      IAHN +FD  F++AELQR     L    I    
Sbjct: 65  KTVAQAPYFEDIAATIYNLLDG--CIIIAHNIQFDYTFLSAELQRCGMPALQNKGIDTVE 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                    S   LN L  ++ I     + H A  D+ + +++++ +     ++  
Sbjct: 123 LAQVLLPTESSYRLNDLVSKFNIEH--TNPHQADSDAAVTAELFLVLKQKLKELPL 176


>gi|254443961|ref|ZP_05057437.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Verrucomicrobiae bacterium DG1235]
 gi|198258269|gb|EDY82577.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Verrucomicrobiae bacterium DG1235]
          Length = 220

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 74/200 (37%), Gaps = 6/200 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTGL  K + I +I  V L         +F  ++ P G+       KL  + DE
Sbjct: 8   VAFDLETTGLRYKQEEITQIAGVRLGGVIMNVEDSFCTYVNP-GKPIPENIQKLTRVRDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +KD P        F D+  +        +   F+     A  + +    +     +D  
Sbjct: 67  DVKDAPKPLEALQAFSDWVGDATLFGHDIYRFDFNFIRKYARQEGVETRTVRFIDTMDIF 126

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            +        RN L+ + +R    +S   +H A  D+ LL+ +Y          +     
Sbjct: 127 EVMWPDFSRLRNSLDDIAERLSAGLSSMRRHDAQSDAILLAHIYQ---RIQDHPDLEKLC 183

Query: 188 NEDRFFKEEKKTVPNISLLK 207
                 +EE  T+P  +  K
Sbjct: 184 TRVPVHEEEIPTLPVKNRKK 203


>gi|220920098|ref|YP_002495399.1| DNA polymerase III subunit epsilon [Methylobacterium nodulans ORS
           2060]
 gi|219944704|gb|ACL55096.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
          Length = 223

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 8/170 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGLD + D I+ + A+ +  D   T+ +F+  +    R +SPEA+K+H + + 
Sbjct: 32  VALDCETTGLDPRRDEIVAVAAIRIRGDRILTSESFRATVQSQ-RPSSPEAIKVHRLLEA 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI---ID 125
            ++       +  E   F        + +   FDVG ++   +RI +  L   RI     
Sbjct: 91  EIRQGMPHDVMLPELLRFIGS--RPVVGYYTDFDVGMVDKYARRILRIRLPNPRIDVSAL 148

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDSHLLSDVYIKM 174
             +   R  P       S  +           +H A  D+ + + +Y+++
Sbjct: 149 YYACKYRDAPDYVKIDLSFARIAADLGLPALPQHDAFNDALMTAMMYVQL 198


>gi|83311172|ref|YP_421436.1| DNA polymerase III subunit epsilon [Magnetospirillum magneticum
           AMB-1]
 gi|82946013|dbj|BAE50877.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
          Length = 306

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 63/229 (27%), Gaps = 11/229 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCPNGRKNSPEALKLHG 64
           I  D+ETTGLD   D IIE+  V  +        +    FQ    P       E  KL G
Sbjct: 53  IFIDLETTGLDPAKDEIIELAMVPFVYGLDGRIFEIQDAFQGLRQP-SNPIPAEITKLTG 111

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITDE +  K    +  + F        A   A + KF   F  +   +     +      
Sbjct: 112 ITDEMVAGKVIDPAEVAAFAAPAAIVIAHNAAFDRKFIERFCPSFSTKPWGCSMSQVDWT 171

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG-ALLDSHLLSDVYIKMMVGGSQINF 183
                  +                     H +    A            K++    +   
Sbjct: 172 GEGFEGTKLGYLLGGFGLFHDGHRATDDCHAAIEILARPLPKSGVPAMGKLLEKAREATC 231

Query: 184 GFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
                   F  ++               R +  F  + +++L +    +
Sbjct: 232 RVWAENSPFDLKDVLKARGYRWSDGSDGRPRAWFIDVPEDQLQQEKDFL 280


>gi|57652115|ref|YP_186779.1| exonuclease [Staphylococcus aureus subsp. aureus COL]
 gi|87160447|ref|YP_494527.1| exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195792|ref|YP_500602.1| hypothetical protein SAOUHSC_02110 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151222044|ref|YP_001332866.1| exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161510116|ref|YP_001575775.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141184|ref|ZP_03565677.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258451040|ref|ZP_05699076.1| exonuclease [Staphylococcus aureus A5948]
 gi|262049938|ref|ZP_06022798.1| hypothetical protein SAD30_1408 [Staphylococcus aureus D30]
 gi|262053185|ref|ZP_06025343.1| hypothetical protein SA930_1190 [Staphylococcus aureus 930918-3]
 gi|282923233|ref|ZP_06330914.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9765]
 gi|284024940|ref|ZP_06379338.1| exonuclease [Staphylococcus aureus subsp. aureus 132]
 gi|294849443|ref|ZP_06790185.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9754]
 gi|304379080|ref|ZP_07361827.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57286301|gb|AAW38395.1| exonuclease [Staphylococcus aureus subsp. aureus COL]
 gi|87126421|gb|ABD20935.1| exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87203350|gb|ABD31160.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374844|dbj|BAF68104.1| exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368925|gb|ABX29896.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257861282|gb|EEV84094.1| exonuclease [Staphylococcus aureus A5948]
 gi|259158912|gb|EEW43998.1| hypothetical protein SA930_1190 [Staphylococcus aureus 930918-3]
 gi|259161946|gb|EEW46528.1| hypothetical protein SAD30_1408 [Staphylococcus aureus D30]
 gi|282593144|gb|EFB98143.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9765]
 gi|294823580|gb|EFG40007.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9754]
 gi|302751766|gb|ADL65943.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304342315|gb|EFM08207.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315196235|gb|EFU26590.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320139726|gb|EFW31595.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320142357|gb|EFW34171.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329314570|gb|AEB88983.1| Exonuclease [Staphylococcus aureus subsp. aureus T0131]
 gi|329728665|gb|EGG65095.1| exonuclease [Staphylococcus aureus subsp. aureus 21189]
          Length = 184

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 9/177 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI+      +  D ET   + K   I  +G V+++D   T  TF   + P     S + +
Sbjct: 1   MIQDA---FVALDFET--ANGKRTSICSVGMVKVIDSQIT-ETFHTLVNPQD-YFSQQNI 53

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPL 118
           K+HGI  E +++ P+F  +F     F  +        A +       I            
Sbjct: 54  KIHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTY 113

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             S  +   ++   ++             +G   +        + +  L   Y  + 
Sbjct: 114 FCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLT 170


>gi|146302714|ref|YP_001197305.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
 gi|146157132|gb|ABQ07986.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
          Length = 256

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 72/181 (39%), Gaps = 8/181 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG+D   DRI+EI   ++  + +K ++T+   + P      P+   +HGITDE 
Sbjct: 11  FFDLETTGIDIGKDRIVEISIFKVFPNGNKESKTW--LVNP-TIPIPPQTTAVHGITDEK 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P+F+ +     +   + +      +           L+      +     +D  +I
Sbjct: 68  VANEPTFAELAPLVHNMIKDSDLAGFNSDRFDIPLLAEELLRAGVDFDMKNKVSVDVQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          S   ++    S  + H A  D+    ++    +    ++    K+  
Sbjct: 128 FHK----MEERTLSAALKFYCGKSLDNAHSAEADTMATYEILKAQLDRYPELENDMKSLS 183

Query: 190 D 190
           +
Sbjct: 184 E 184


>gi|327194132|gb|EGE61003.1| putative polymerase protein, epsilon subunit [Rhizobium etli
           CNPAF512]
          Length = 326

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 64/187 (34%), Gaps = 15/187 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+ ++D IIEIGAV     D         ++  L    R   PE  +L GI
Sbjct: 75  VVLDTETTGLNHRSDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIPPEVTRLTGI 134

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD  ++ +     I         E     IAHNA FD  F  A                 
Sbjct: 135 TDAMVEGQ----VIDIRSLSALIEPADLIIAHNAGFDRPFCEAFSSLFTGKAW------- 183

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             S+A     +   +   L    G        H A+ D H L ++  +    G       
Sbjct: 184 ACSVAEIDWSARGFEGTKLGYLVGQAGYFHEGHRAVDDCHALLEILDRQQGEGESPFAEL 243

Query: 186 KTNEDRF 192
                R 
Sbjct: 244 YRASQRS 250


>gi|302333559|gb|ADL23752.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 184

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 60/189 (31%), Gaps = 9/189 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI+      +  D ET   + K   I  +G V+++D   T  TF   + P     S + +
Sbjct: 1   MIQDA---FVALDFET--ANGKRTSICSVGMVKVIDSQIT-ETFHTLVNPQD-YFSQQNI 53

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPL 118
           K+HGI  E +++ P+F  +F     F  +        A +       I            
Sbjct: 54  KVHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTY 113

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             S  +   ++   ++             +G   +        + +  L   Y  +    
Sbjct: 114 FCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTHVT 173

Query: 179 SQINFGFKT 187
           +      K 
Sbjct: 174 NIYGKNLKD 182


>gi|224541223|ref|ZP_03681762.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525868|gb|EEF94973.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM
           15897]
          Length = 212

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 60/179 (33%), Gaps = 11/179 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IV DIE TGL+ + +R+IE+ A++ +++ +  R F   + P   +   + L        
Sbjct: 15  YIVVDIEATGLNPETERLIEVAAIKYINHKEVAR-FSELINPLRDQLPVDLLDKDKTIYI 73

Query: 69  FLKDKPSFSSIFSEFW----------DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
               +                     ++      + I  +          +    +   L
Sbjct: 74  SDFIENLTGISNRMLHDARGEKDVLREYIKFIGNDVIIGHNVRFDIRFIYDALLRDYGVL 133

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +  IDTL IAR+                   I +   H A+ D  +  DVY  MM  
Sbjct: 134 FQNDYIDTLKIARKLLHEDLKRYRLKDLADHYHIDYSHAHRAVNDCEITHDVYEMMMED 192


>gi|89891036|ref|ZP_01202544.1| putative DNA polymerase III, epsilon subunit [Flavobacteria
           bacterium BBFL7]
 gi|89516680|gb|EAS19339.1| putative DNA  polymerase III, epsilon subunit [Flavobacteria
           bacterium BBFL7]
          Length = 255

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 74/231 (32%), Gaps = 18/231 (7%)

Query: 2   IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  R I  FD+ETTG++   DRI+EI   ++L    T +T+   + P          
Sbjct: 1   MQLNLRRPICFFDLETTGVNISKDRIVEIAIHKVLPDG-TEKTYTYRVNP-TVPIPAATT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGITD+ +KD+P+F  +  E  +   + +      N            + + +  +D 
Sbjct: 59  AVHGITDDMVKDEPTFKELAHEIHNIIKDSDLAGFNSNRFDI----PLLAEEMLRAGVDF 114

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                     +               ++       + H A  D+    +V    +     
Sbjct: 115 EMGNRNAIDVQNIFHKMEQRTLVAAYKFYCDKDLTNAHSAEADTIATYEVLKGQLDRYPD 174

Query: 181 INFGFKTNED-----------RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           +        +                  +     +  K        + ++E
Sbjct: 175 LENDMNALAEFSTRRKPVDFAGMLAFNDQGEECFNFGKHKGKKVVDVLEKE 225


>gi|311695934|gb|ADP98807.1| DNA polymerase III, epsilon subunit [marine bacterium HP15]
          Length = 486

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 5/158 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               DIETTG +S  DRI EIG             +Q  L P  R  SP      GI++E
Sbjct: 13  FAFLDIETTGGNSARDRITEIGIRFWRAGEVVGE-WQTLLNPETR-ISPFIENFTGISNE 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P F  +  E           ++AHNA+FD GFI +E +R+ +           LS
Sbjct: 71  MVADAPLFEEVADELEAQLKG--KVFVAHNARFDYGFIKSEFRRLGRLFSAKVLCTVKLS 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             R      R+++++L  R+G+    R +    + + L
Sbjct: 129 -RRLYPEFRRHNMDALIARHGLARVQRHRAMGDVSAML 165


>gi|307717332|gb|ADN88719.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 6/194 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +   F +     +   +AHNA FD+GFIN   +++     + + +         
Sbjct: 59  SDPIDVVLKRFKE--WSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLELARFL 116

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
                 + LN+L K++   I     H A+ D+   + +  K++    +++     +    
Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDYHDSLND 174

Query: 193 FKEEKKTVPNISLL 206
           +  E          
Sbjct: 175 YMGEGDAYKRARPF 188


>gi|311899062|dbj|BAJ31470.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae
           KM-6054]
          Length = 329

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 8/172 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL  ++DR+I  G  +L    +    +   + P      P  + +HG+T E
Sbjct: 25  FAVVDVETTGLG-RSDRVISAGVYQLDPDGEITDHWYTLVNPQR---DPGPVWIHGLTSE 80

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P+F  + +EF +   +     +AHNA FD   I+ E  R         R+   + 
Sbjct: 81  VLAGAPTFPEVAAEFAERLRD--RVLVAHNALFDWNMISREFSRAGLRAPVEQRLCTMVL 138

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
               + P     L+SL   +   +  R  H AL D+ +L++V+   +     
Sbjct: 139 ARDLRLPLPNGKLSSLAAHF--DVRQRQAHHALDDARVLAEVFRPSLELARS 188


>gi|309807500|ref|ZP_07701459.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
 gi|308169250|gb|EFO71309.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
          Length = 234

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 5/173 (2%)

Query: 6   KMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            M   V D+ETTG    ++DRII+ G   + D   T +T+   + P  +        L G
Sbjct: 1   MMFFAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+++      +FS    +  +            N              ++         +
Sbjct: 59  ISNQEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTV 118

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175
           +   IA    PS +    +          HR+   AL+ + +L  +   I+M+
Sbjct: 119 ELAQIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIDKIEML 171


>gi|269941365|emb|CBI49762.1| putative exonuclease [Staphylococcus aureus subsp. aureus TW20]
          Length = 184

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 9/177 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI+      +  D ET   + K   I  +G V+++D   T +TF   + P     S + +
Sbjct: 1   MIQDA---FVALDFET--ANGKRTSICSVGMVKVIDSQIT-KTFHTLVNPQD-YFSQQNI 53

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPL 118
           K+HGI  E +++ P+F  +F     F  +        A +       I            
Sbjct: 54  KIHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTY 113

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             S  +   ++   ++             +G   +        + +  L   Y  + 
Sbjct: 114 FCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLT 170


>gi|332521177|ref|ZP_08397635.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola
           5H-3-7-4]
 gi|332043270|gb|EGI79467.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola
           5H-3-7-4]
          Length = 257

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 69/172 (40%), Gaps = 8/172 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG++   DR++EI  +++  + +K ++T+   + P       E   +HGITDE 
Sbjct: 11  FFDLETTGINISKDRVVEISILKVFPNGNKESKTW--LVNPE-MPIPAEVSAIHGITDER 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P+F+ +  E      + +      N           L+      ++    ID  +I
Sbjct: 68  VANEPTFAELAKEINVMIKDSDLAGFNSNRFDIPLLAEEMLRANMDFDMNKRVAIDVQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
             +          S   ++    +  + H A  D+    +V    +     +
Sbjct: 128 FHK----MEQRTLSAAYKFYCDKNLENAHSAEADTLATYEVLKAQLDRYEDL 175


>gi|315127223|ref|YP_004069226.1| ribonuclease T [Pseudoalteromonas sp. SM9913]
 gi|315015737|gb|ADT69075.1| ribonuclease T [Pseudoalteromonas sp. SM9913]
          Length = 224

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 82/206 (39%), Gaps = 13/206 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++EI A  +++ D      + T    + P  G      A++ +G
Sbjct: 19  VVIDVETAGFNKETDALLEIAASVLKMDDEGLLSIDHTVHFHVQPFEGANIEQAAIEFNG 78

Query: 65  ITDE--------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +       +  +       Q +  +AHNA FD GF+NA ++R N  
Sbjct: 79  IEPFSALRGAVPEEEAIKEICKVVRKAQKAAGCQRSVVVAHNAAFDHGFLNAAIERNNIK 138

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + +       +  L   C+  GI   ++  H AL D+   +++Y  ++ 
Sbjct: 139 RTPFHPFVSFDTTSLAGLALGQTVLAKACRAAGIEFDNKQAHSALYDTERTAELYCLIVN 198

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              Q+       ++    E++ +  +
Sbjct: 199 RWQQLGGWPLAIDETQQNEDEVSNQD 224


>gi|291301852|ref|YP_003513130.1| DNA polymerase III subunit epsilon [Stackebrandtia nassauensis DSM
           44728]
 gi|290571072|gb|ADD44037.1| DNA polymerase III, epsilon subunit [Stackebrandtia nassauensis DSM
           44728]
          Length = 578

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 4/167 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG+ S    I EIGAV++         +   + P G         L GITD  +
Sbjct: 28  VVDLETTGVASDACSITEIGAVKVRGGEVLGE-YATLVNP-GEAIDARISALTGITDAMV 85

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P+   +   F +    + A W+AHNA FDVGF+ +   +       P  +   +   
Sbjct: 86  ADAPAIEEVLPSFLE--FARGAVWVAHNAPFDVGFLRSACAQAELPWPRPQVVDTVVLAR 143

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           R    S   +              +  H AL D+    DV   ++  
Sbjct: 144 RLVDRSEVPNKRLSTLARYFGARVKPSHRALDDARATVDVLHALLER 190


>gi|349620|gb|AAA17435.1| DNA polymerase III epsilon subunit [Buchnera aphidicola]
          Length = 179

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 80/180 (44%), Positives = 106/180 (58%), Gaps = 11/180 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            N  R IV D ETTG++S        RIIEIGA+E+++   T + F  ++ PN R    +
Sbjct: 2   NNTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN-RLIESD 60

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INK 115
           A K+HGITD+FL DKPSF  I  +F+++        I HNA FDVGFIN E        +
Sbjct: 61  ASKIHGITDDFLSDKPSFKDIAKDFFNYIKNSE--LIIHNASFDVGFINQEFSMLTKKIQ 118

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D  +   IIDTL IAR+  P  +N L++LC RY I  SHR  HGA+LD+ LL  +Y+ M 
Sbjct: 119 DISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGKLYLLMT 178


>gi|156934185|ref|YP_001438101.1| ribonuclease T [Cronobacter sakazakii ATCC BAA-894]
 gi|166228564|sp|A7MFC6|RNT_ENTS8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|156532439|gb|ABU77265.1| hypothetical protein ESA_02012 [Cronobacter sakazakii ATCC BAA-894]
          Length = 223

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL---DYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L    D   T + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAVTLKMDADGWLTPDETLHFHVEPFEGAILQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +   +  +     N   A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCNRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L   C   G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLAKACIAAGMPFDSTQAHSALYDTEQTALLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|330995701|ref|ZP_08319599.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
 gi|329574760|gb|EGG56321.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
          Length = 256

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 70/172 (40%), Gaps = 8/172 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG++  NDRI+E+  +++  + ++ +++  + + P        +  +HGI DE
Sbjct: 10  VFFDLETTGINITNDRIVELCYIKVYPNGNEESKS--MRINPEMH-IPESSSAIHGIYDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +  +  +     +      N       +   L+      +   + ID  +
Sbjct: 67  DVADCPTFKQVAKDLANTIKGCDFAGFNSNRFDVPMLVEEFLRAGIDIDIRKRKFIDVQN 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           I  +          S   ++       + H AL D+    +V +  +    +
Sbjct: 127 IYHK----LERRTLSAAYKFYCGKDLENAHSALADTRATYEVLMAQLDHYPE 174


>gi|239616933|ref|YP_002940255.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239505764|gb|ACR79251.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 180

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 65/170 (38%), Gaps = 9/170 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64
           M  +V D ETTG    K   +IEI  V + D+      +F   + P  R        + G
Sbjct: 1   MEFVVIDTETTGSSPHKGAELIEIAGVVVRDWEIIYEESFNELIKPK-RHVPISITMITG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I +  L+DK     +   F+DF  +     +  NA FD+ F++   ++I    L    + 
Sbjct: 60  INNLMLEDKLPIEIVLPRFYDFVRD--RVLVIQNAPFDLSFLDYFGKKIGIGELPNPFVD 117

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                          D+        + I    +H AL D+   +  +IKM
Sbjct: 118 TISLSRSLFRGRHNLDII----LARLGIFCEDRHRALGDAVATAKAFIKM 163


>gi|257464923|ref|ZP_05629294.1| ribonuclease T [Actinobacillus minor 202]
 gi|257450583|gb|EEV24626.1| ribonuclease T [Actinobacillus minor 202]
          Length = 216

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET GL+++ D ++EI A+ +    +     ++     + P  G   + ++LK +G
Sbjct: 21  VIIDVETAGLNAQTDALLEIAAITVKMDENGYLVPDQKCHYHIQPFEGANINQDSLKFNG 80

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +             P    +  +       Q A  +AHNA FD GF+ A  +RIN  
Sbjct: 81  IDIDNPLRGAVPENIAIPEMFKMVRKAMKDQGCQRAVIVAHNAAFDQGFLQAAAKRINAK 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    +  H AL D+   ++++  M+ 
Sbjct: 141 RDPFHPFAMFDTATLAGFMYGQTVLVKACQMANIAFDGKQAHSALYDTEKTTELFCTMVN 200

Query: 177 GGSQIN 182
               + 
Sbjct: 201 RLKDLG 206


>gi|302875356|ref|YP_003843989.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
 gi|307688937|ref|ZP_07631383.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
 gi|302578213|gb|ADL52225.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
          Length = 867

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 4/168 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             IVFD+E+TG D   D II+I A+ +    +   +F+ FL P   K S +  +      
Sbjct: 500 NIIVFDVESTGTDVTEDEIIQIAAIRINRNGEVIDSFERFLKP---KKSVKNSEHIHGFS 556

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +    +                +NA  + HN ++D+  +++E+ R+N          DTL
Sbjct: 557 DEFLKEKGEDKETVIKEFLRFSENAVIVGHNVQYDINILSSEIHRLNLGKSKFLAFYDTL 616

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            I RR +P+  N   +          +   H A+ D     D+ I+ +
Sbjct: 617 DIYRRFYPNLVNHKLNTLSDI-FKTENIPSHDAMDDILATKDLLIRAL 663


>gi|167762354|ref|ZP_02434481.1| hypothetical protein BACSTE_00708 [Bacteroides stercoris ATCC
           43183]
 gi|167699997|gb|EDS16576.1| hypothetical protein BACSTE_00708 [Bacteroides stercoris ATCC
           43183]
          Length = 256

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 68/191 (35%), Gaps = 8/191 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +  +DRI+EI  +++  + ++  +T  + + P       EA  +HGI DE
Sbjct: 10  VFFDLETTGTNINSDRIVEICYLKVYPNGNEETKT--MRINPEMH-IPEEASAVHGIYDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P+F  +     +     +      N           L+      +   + +D   
Sbjct: 67  DVAECPTFKEVARNIANDIEGCDLAGFNSNRFDIPVLAEEFLRADVDIDMSRRKFVDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I  +          S   ++    +    H A  D+    +V +  +    ++       
Sbjct: 127 IFHK----MEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLMSQLDRYPELQNDVAFL 182

Query: 189 EDRFFKEEKKT 199
            D     +   
Sbjct: 183 SDYSSFNKNVD 193


>gi|332876762|ref|ZP_08444520.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685321|gb|EGJ58160.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 256

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 69/172 (40%), Gaps = 8/172 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG++   DRI+E+  +++  + ++ +++  + + P        +  +HGI DE
Sbjct: 10  VFFDLETTGINITTDRIVELCYIKVYPNGNEESKS--MRINPEMH-IPESSSAIHGIYDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +  E  +     +      N       +   L+      +   + ID  +
Sbjct: 67  DVADCPTFKQVARELANTIKGCDFAGFNSNRFDVPMLVEEFLRAGIDIDIRKRKFIDVQN 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           I  +          S   ++       + H AL D+    +V +  +    +
Sbjct: 127 IYHK----LERRTLSAAYKFYCGKDLENAHSALADTRATYEVLMAQLDHYPE 174


>gi|150025497|ref|YP_001296323.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86]
 gi|149772038|emb|CAL43514.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 256

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 83/214 (38%), Gaps = 9/214 (4%)

Query: 2   IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           +     R I  FD+ETTG+D   DRI+EI   ++  + +K ++T+   + P       + 
Sbjct: 1   MELKLTRPICFFDLETTGIDIGKDRIVEISVFKIFPNGNKESKTW--LVNP-TIPIPAQT 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGITDE + ++P+F+ + S+ ++   + +      +           L+      + 
Sbjct: 58  TAVHGITDEKVANEPTFNELASQVYNMIKDSDLAGFNSDRFDIPLLAEELLRAGVDFDMK 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               +D  ++  +          S   ++    S  + H A  D+    ++    +    
Sbjct: 118 GRVSVDVQTVFHK----MEERTLSAALKFYTGKSLENAHSAEADTMATYEILKAQLDRYP 173

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
           ++    K+  +   +++      +    +D    
Sbjct: 174 ELENDMKSLSEFTTRKKIADFAGMIAFDKDNEEV 207


>gi|307717326|gb|ADN88716.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717328|gb|ADN88717.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717342|gb|ADN88724.1| DNA polymerase III [Listeria marthii]
 gi|307717348|gb|ADN88727.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717364|gb|ADN88735.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717370|gb|ADN88738.1| DNA polymerase III [Listeria marthii]
 gi|307717372|gb|ADN88739.1| DNA polymerase III [Listeria marthii]
 gi|307717376|gb|ADN88741.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717382|gb|ADN88744.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717384|gb|ADN88745.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717398|gb|ADN88752.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717404|gb|ADN88755.1| DNA polymerase III [Listeria monocytogenes]
          Length = 231

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 6/194 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +   F +     +   +AHNA FD+GFIN   +++  +  + + +         
Sbjct: 59  SDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELARFL 116

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
                 + LN+L K++   I     H A+ D+   + +  K++    +++     +    
Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDFHDSLND 174

Query: 193 FKEEKKTVPNISLL 206
           +  E          
Sbjct: 175 YMGEGDAYKRARPF 188


>gi|198274686|ref|ZP_03207218.1| hypothetical protein BACPLE_00842 [Bacteroides plebeius DSM 17135]
 gi|198272133|gb|EDY96402.1| hypothetical protein BACPLE_00842 [Bacteroides plebeius DSM 17135]
          Length = 258

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 69/200 (34%), Gaps = 12/200 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +   DRI+EI  +++  + ++  +T +  + P        +  +HGI DE
Sbjct: 10  VFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTLR--INPEMH-IPETSTAIHGIHDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +  +        +      N       +   L+      L   + +D   
Sbjct: 67  DVADCPTFKEVAKDIARDIEGADIAGFNSNRFDVPVLVEEFLRAGIDIDLTKRKFVDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I  +          S   ++    +    H A  D+    +V    +            N
Sbjct: 127 IYHK----LEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLKAQLDHYP----DVLQN 178

Query: 189 EDRFFKEEKKTVPNISLLKR 208
           +  +  E      N+    R
Sbjct: 179 DINYLSEYSSYSKNVDFAGR 198


>gi|118473161|ref|YP_890494.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
           MC2 155]
 gi|118174448|gb|ABK75344.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
           MC2 155]
          Length = 337

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 94/244 (38%), Gaps = 30/244 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG      RI+ + A+ + D      +    L P      P    +HG+T E L
Sbjct: 26  VVDVETTGFRPGQARIVSVAALAVGDDGSVEHSMSSLLNPG---VDPGPTHVHGLTAEML 82

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + +P F+ +  E  +         +AHNA FD  F+ AE + +  +    + +       
Sbjct: 83  EGQPCFADVVDELIEVLRG--RTLVAHNAGFDYSFLAAEAELVGAELPIDTAMCTVELAR 140

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY---------------IKMM 175
           R +  +    L +L   +G+T      H AL D+ +L+ +                ++ +
Sbjct: 141 RLELGTENLRLETLAAHWGVTQMKP--HDALDDALVLAQILKPTLARARDRKVWLPLRQL 198

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVP----NISLLKRDKPLF----TRITKEELDEHDKT 227
                 N     +E R  K E   +P    N       +PL       ++ E +  H++ 
Sbjct: 199 TRKRWPNGHVTHDELRPLKVEASRLPCRYANPGPFVAGRPLVQGMRVALSAEVVRTHEEL 258

Query: 228 IQTL 231
           ++ +
Sbjct: 259 LERV 262


>gi|116514018|ref|YP_812924.1| Rad3-related DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093333|gb|ABJ58486.1| Rad3-related DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 930

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 62/205 (30%), Gaps = 3/205 (1%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   +  DRII+ G   + D     +T+   + P+ RK       L GI  
Sbjct: 10  FAVVDLETTGTRKEEGDRIIQFGCAIVKDGEVV-KTYSFMMNPH-RKIPLAVTNLTGIDQ 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + D+  F     +  +   +        N  F                      ++  
Sbjct: 68  KMVADQADFKHYAPKIREILQDTVFVAHNVNFDFPFLNYELTNAGFEALTCKAVDTVELA 127

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            IA    PS +    +          H++   A   + LL  +  K+            +
Sbjct: 128 KIAFPTLPSYKLRDLTASLEIKHANPHKADSDAYGTAVLLLKIIDKLASLPQATLNVLGS 187

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPL 212
                 ++    +  I+   R    
Sbjct: 188 LASGLIRDTGDVIKVIADQSRQSRR 212


>gi|260597773|ref|YP_003210344.1| ribonuclease T [Cronobacter turicensis z3032]
 gi|260216950|emb|CBA30569.1| Ribonuclease T [Cronobacter turicensis z3032]
          Length = 223

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL---DYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L    D   T + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAVTLKMDADGWLTPDETLHFHVEPFEGAILQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +   +  +     N   A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCNRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L   C   G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLAKACIAAGMPFDSAQAHSALYDTEQTALLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|154487175|ref|ZP_02028582.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis
           L2-32]
 gi|154085038|gb|EDN84083.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis
           L2-32]
          Length = 261

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIETTGL  ++ RIIE+GAV +    K   ++   + P       +  ++ GITD 
Sbjct: 99  YVAVDIETTGLG-RDARIIELGAVRIRHGRKVA-SYSQLVNPQ-IPIPAKVTQITGITDR 155

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAE 93
            +K KP+      +F+ F       
Sbjct: 156 NVKGKPTIDKALPKFYAFCGRDTWI 180


>gi|332312340|gb|EGJ25435.1| ATP-dependent helicase [Listeria monocytogenes str. Scott A]
          Length = 931

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M +  + R IV D+ETTG  + + DRII+  A  +    +   T+  FL P  +      
Sbjct: 1   MEQMKQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
            +L GI+ + +K+ P F  +     +   +    ++AHN  FD  F+  E+
Sbjct: 59  QELTGISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 107


>gi|163782941|ref|ZP_02177936.1| hypothetical protein HG1285_00160 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881621|gb|EDP75130.1| hypothetical protein HG1285_00160 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 215

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPN 51
           +VFD ETTGLD +   ++ IGA+ +++YS   + +F  F+ P 
Sbjct: 40 FVVFDTETTGLDLRRAELVSIGALRVVNYSFNLSESFHRFVKPK 83


>gi|323339821|ref|ZP_08080090.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644]
 gi|323092694|gb|EFZ35297.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644]
          Length = 968

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 11/175 (6%)

Query: 5   NKMR----KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
            KM       V D+E TG +    +R+I+   V          TF   + P  RK   + 
Sbjct: 32  KKMSNLQTYAVVDLEMTGTNPNGSERLIQFSCVFTEGNKIV-NTFSTLINP-LRKIPEDV 89

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             L  ITD+ +K  P+F  +    +   ++    ++AHN + D  F+N+E +RI    LD
Sbjct: 90  QNLTNITDKDVKSAPTFDEVAGTIYALLSD--TVFVAHNIELDYRFLNSEFERIGFPKLD 147

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              I             +   L  L    G    H   H A  D+ + ++++I +
Sbjct: 148 LEGIDTVQLAQIAFPTLASYRLGDLAHFLGFKHKHP--HHADSDAFVTAELFILL 200


>gi|89894618|ref|YP_518105.1| hypothetical protein DSY1872 [Desulfitobacterium hafniense Y51]
 gi|89334066|dbj|BAE83661.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 929

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 12/185 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI+      +V DIETTG D  ND IIE  A+ + +  +    F V + P  R+     L
Sbjct: 1   MIKGK---IVVIDIETTGFDIYNDEIIEFAALCIEEGEE-AEAFSVLISP-RRQVPERIL 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GI+ E LK   S  +   +  D F +  A  + HN +FD+GF+   L    ++ L  
Sbjct: 56  RLTGISPEELKQAGSLHAYRDKILDLFQD--AIIVGHNVEFDLGFLEQALTIHFENTLWD 113

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  I             +  L  L K  G+T   ++ H AL D+    ++       G  
Sbjct: 114 TLEIA----RILYPNMPKYKLGDLTKSLGLTPLEKA-HRALFDARAAWELLQACWEKGLT 168

Query: 181 INFGF 185
           ++ GF
Sbjct: 169 LDLGF 173


>gi|110634574|ref|YP_674782.1| DNA polymerase III, epsilon subunit [Mesorhizobium sp. BNC1]
 gi|110285558|gb|ABG63617.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1]
          Length = 498

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 6/185 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD ETTGLD++  R++++  V +     + + +F+  + P G    P+++++HGITD 
Sbjct: 16  VAFDTETTGLDTRTARVVQVAGVAISRGAVRQDESFESLVHP-GMSIPPDSIRIHGITDG 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P+F++++  F           I +   FD+  I  E  R       P  +     
Sbjct: 75  MLREAPAFAAVWRSF--EMFRGVRPLIGYAVGFDLAIIEREAARAGIRRKRPRTLCVRTL 132

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + L +L    G  I  R  H AL D+   + V+  ++     +       
Sbjct: 133 SRIVNRDLRGHSLEALAAWLGFEIIGR--HQALDDAMAAAKVFTGLLPRLQAMGIRTFAE 190

Query: 189 EDRFF 193
            +R  
Sbjct: 191 AERAS 195


>gi|313887234|ref|ZP_07820929.1| exonuclease [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923325|gb|EFR34139.1| exonuclease [Porphyromonas asaccharolytica PR426713P-I]
          Length = 255

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 8/171 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFDIE TGLD  NDRIIE+  ++L+ D  +  RT      P       E+  +HGITDE
Sbjct: 10  VVFDIEATGLDITNDRIIELTILKLMPDGERIVRT--RRFNPE-MPIPAESTAIHGITDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P F +      +  +  +                  L+   +  L   + ID  +
Sbjct: 67  DVRDCPPFRACAKSLAELIDGCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLSRQHIDVQT 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           I  +  P           R+     H   HGA  D+    DV +  +    
Sbjct: 127 IFHKMEP----RTLEGAVRFYCHREHIGAHGAEADTIATLDVLLAQLEKYG 173


>gi|226227968|ref|YP_002762074.1| exonuclease [Gemmatimonas aurantiaca T-27]
 gi|226091159|dbj|BAH39604.1| exonuclease [Gemmatimonas aurantiaca T-27]
          Length = 323

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 18/226 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR +V D+ETTGLD+  D IIE GAV      +  R + V        + P +       
Sbjct: 47  MRGLVVDVETTGLDTARDVIIEFGAVPFDFDGE-GRVYTV--------HPPLSYFEDPGR 97

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
               +          +      +  A   A +    V   NA   R   +   P+     
Sbjct: 98  PIPAEASAITGITDDDVRGKRIDDAAVLAALDQAVLVIAHNAGFDRRMLERRLPAFAAKH 157

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            + ++++ P  R    S    Y +    R+ H     +       + ++     ++    
Sbjct: 158 WACSQQEVPWVRFGSRSQKLDYLLYRIARAFHTGHRAADDCL-ATLHLLASAHPVSPSDS 216

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRI----TKEE----LDEH 224
           +++    +   +  P   LL+  +    R+    T  E    L  H
Sbjct: 217 SDDVEDVRSAVQIAPLQLLLQHARRRTYRLWATGTPIEVKDVLKAH 262


>gi|320161625|ref|YP_004174850.1| hypothetical protein ANT_22240 [Anaerolinea thermophila UNI-1]
 gi|319995479|dbj|BAJ64250.1| hypothetical protein ANT_22240 [Anaerolinea thermophila UNI-1]
          Length = 194

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 47/163 (28%), Gaps = 7/163 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ETTGL ++ D IIEI  V   +       ++  + P                ++ 
Sbjct: 26  IYLDTETTGLSAQ-DEIIEISIVN-DNGEVV---YESLVRPTRPIPPDAIAVHGISNEDV 80

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            K +P    I  +            + +N +FD+  +     R+     D  R  D + +
Sbjct: 81  QKARP--WHIVWQEVRPILLNAGVVVIYNEEFDLRMMQQSHARLGLPWRDRFRTFDLMKL 138

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               +        +                        +D  +
Sbjct: 139 YAEYYGEWDPKRRAYRYHSLDAAGKHCGITLPNAHRATADTLL 181


>gi|315224228|ref|ZP_07866068.1| exonuclease [Capnocytophaga ochracea F0287]
 gi|314945961|gb|EFS97970.1| exonuclease [Capnocytophaga ochracea F0287]
          Length = 258

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 75/222 (33%), Gaps = 19/222 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG+D   DRI+EI  +++  + +K ++T+   + P        A  +HGITDE 
Sbjct: 11  FFDLETTGIDITKDRIVEISILKVYPNGNKESKTW--LVNP-TIPIPKAASDVHGITDER 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +P+F  +  +  +   + +      +           L+      L     +D  +I
Sbjct: 68  VAGEPTFKELAKQIHNMIKDSDLAGYNSDRFDIPLLAEEMLRAEVDFDLGNRVSVDVQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          S   ++         H A  D++   ++    +     +    K   
Sbjct: 128 FHK----MEQRTLSAAYKFYCGKDLIDAHTASADTNATYEILKAQLDRYDSLENNIKKLS 183

Query: 190 D-----------RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           +            F     K     +  K        I  EE
Sbjct: 184 EFTYRKQIADFAGFIGYNDKGEEIFTFGKHKGKRVEDIFDEE 225


>gi|317047907|ref|YP_004115555.1| ribonuclease T [Pantoea sp. At-9b]
 gi|316949524|gb|ADU68999.1| ribonuclease T [Pantoea sp. At-9b]
          Length = 222

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 13/203 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A  +++ D      + T    + P  G   +PEAL   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAATTLKMDDDGWLHCDETLHFHVEPFEGAILNPEALAFTG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +   +  +     +   A  +AHNA FD  F+ A  +R+   
Sbjct: 80  IDPSNPLRGAVSEYDALHAIFKMVRKGMKDSHCNRAIIVAHNATFDHNFLMAAAERVGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   CK  G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACKAAGMDFDSTQAHSALYDTEQTAILFCELVN 199

Query: 177 GGSQINFGFKTNEDRFFKEEKKT 199
              ++        D   +E+   
Sbjct: 200 RWKRLGGWPLAYSDDLSEEDAAE 222


>gi|307717338|gb|ADN88722.1| DNA polymerase III [Listeria welshimeri]
 gi|307717340|gb|ADN88723.1| DNA polymerase III [Listeria welshimeri]
 gi|307717362|gb|ADN88734.1| DNA polymerase III [Listeria welshimeri]
 gi|307717368|gb|ADN88737.1| DNA polymerase III [Listeria welshimeri]
 gi|307717392|gb|ADN88749.1| DNA polymerase III [Listeria welshimeri]
          Length = 231

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 6/194 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +   F +     +   +AHNA FD+GFIN   +++  +  D + +         
Sbjct: 59  SDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKADNAVVDTLELARFL 116

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
                 + LN+L K++   I     H A+ D+   + +  K++    +++     +    
Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDINFHDSLND 174

Query: 193 FKEEKKTVPNISLL 206
           +  E          
Sbjct: 175 YMGEGDAYKRARPF 188


>gi|307244994|ref|ZP_07527091.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306854159|gb|EFM86367.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
          Length = 218

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 14/197 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET GL+++ D ++E+ A+ +    +     ++     + P  G   +P++LK +G
Sbjct: 21  VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +             P    +          Q A  +AHNA FD  F+ A ++RIN  
Sbjct: 81  IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQAFVQAAVKRINAK 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    +  H AL D+   ++++  M+ 
Sbjct: 141 RDPFHPFAMFDTATLAGFMFGQTVLVKACQMAKIPFDGKQAHSALYDTEKTTELFCAMVN 200

Query: 177 GGSQI-NFGFKTNEDRF 192
               +  F   ++ +  
Sbjct: 201 RLKGLGGFPLVSDSESN 217


>gi|313123658|ref|YP_004033917.1| ATP-dependent DNA helicase ding [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280221|gb|ADQ60940.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 929

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 62/205 (30%), Gaps = 3/205 (1%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   +  DRII+ G   + D     +T+   + P+ RK       L GI  
Sbjct: 9   FAVVDLETTGTRKEEGDRIIQFGCAIVKDGEVV-KTYSFMMNPH-RKIPLAVTNLTGIDQ 66

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +  F     +  +   ++       N  F                      ++  
Sbjct: 67  KMVAGQADFKHYAPKIREILQDKVFVAHNVNFDFPFLNYELTNAGFEALTCKAVDTVELA 126

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            IA    PS +    +          H++   A   + LL  +  K+            +
Sbjct: 127 KIAFPTLPSYKLRDLTASLEIKHANPHKADSDAYGTAVLLLKIIDKLASLPQATLNVLGS 186

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPL 212
                 ++    +  I+   R    
Sbjct: 187 LASGLIRDTGDVIKVIADQSRQSRR 211


>gi|284931104|gb|ADC31042.1| DNA polymerase III alpha subunit polC/Gram positive-type
           [Mycoplasma gallisepticum str. F]
          Length = 1494

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 15/228 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT---------FQVFLCPNG 52
           ++ +K+  ++FDIETTGL++  ++IIEI AV +                  F+  +    
Sbjct: 403 LKLDKLSFVIFDIETTGLNAYYEQIIEIAAVRVKAELNETNHQLEFVQLGKFEKLIKNE- 461

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           +  S    +L G+ D  LKD     ++  EF +F  + +   +AHN              
Sbjct: 462 KPLSKFTTQLTGLKDSDLKDAQDEKTVLEEFANFIQK-DDVLVAHNGIDFDFIWINTKLD 520

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             K     + ++D+L +A + +   R  L +L  + G        H A  D+ LL+   +
Sbjct: 521 KYKLKPLDNPMLDSLRLAYQLYQFKRYTLENLSLKLGYEYDKTLAHRANYDTELLAKCLM 580

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
            M+      N+    +      +++K +  +S     K    +I  E+
Sbjct: 581 IMLSQIYAKNWRSLLD----LNDQEKLLNYLSEKSLKKAANLKINDED 624


>gi|149276274|ref|ZP_01882418.1| DNA polymerase III epsilon subunit [Pedobacter sp. BAL39]
 gi|149232794|gb|EDM38169.1| DNA polymerase III epsilon subunit [Pedobacter sp. BAL39]
          Length = 334

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 72/191 (37%), Gaps = 8/191 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG++  +DRI+EI  ++ + D ++  +T +  + P        +  +HGI DE 
Sbjct: 11  FFDLETTGVNVGSDRIVEIAILKAMPDGTELIKTLR--INPE-MPIPLASSLIHGIYDEH 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +P+F ++ +E  +F  + +      N       +   L+      +   + +D  +I
Sbjct: 68  IAAEPTFKAVAAEVAEFIGDADLAGYNSNRFDIPVLLEEFLRAGVDFDMSDRKFVDVQNI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +              ++       + H A  D      V +  +   +  +F  K   
Sbjct: 128 FHQ----MEQRTLKAAYKFYCDKDIINAHSAEADITATYHVLLAQIERYADTDFEDKQGN 183

Query: 190 DRFFKEEKKTV 200
                +     
Sbjct: 184 VSKPVQNSVEA 194


>gi|74316845|ref|YP_314585.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC
           25259]
 gi|74056340|gb|AAZ96780.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
           ATCC 25259]
          Length = 470

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 7/177 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R    D+ETTG ++  DR+ EI    ++       T+   + P  R       +L GI++
Sbjct: 9   RLAFVDLETTGANAARDRVTEI--GVVVVDGDRVETWSTLVNPE-RAIPQFIQQLTGISN 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + D P+F+ +  E  +  +     +IAHNA+FD GF+    +         + ++ T+
Sbjct: 66  EMVADAPTFARVADELAERLDG--RLFIAHNARFDYGFLK--HEYQRLGRRFRADVLCTV 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            ++RR  P                 +   +H AL D+ L+   +  +          
Sbjct: 122 RLSRRLFPEHYRHNLDSLIARHGLATEGDRHRALADADLIWQFWRTLQREHEAQALA 178


>gi|325686250|gb|EGD28293.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 930

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 3/205 (1%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   +  DRII+ G   + D     +T+   + P+ RK       L GI  
Sbjct: 10  FAVVDLETTGTRKEEGDRIIQFGCAIVKDGEVV-KTYSFMMNPH-RKIPLAVTNLTGIDQ 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +  F     +  +   +        N  F                      ++  
Sbjct: 68  KMVAGQADFKHYAPKIREILQDTVFVAHNVNFDFPFLNYELTNAGFEALTCKAVDTVELA 127

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            IA    PS +    +          H++   A   + LL  +  K+            +
Sbjct: 128 KIAFPTLPSYKLRDLTASLEIKHANPHKADSDAYGTAVLLLKIIDKLASLPQATLNVLGS 187

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPL 212
                 ++    +  I+   R    
Sbjct: 188 LASGLIRDTGDVIKVIADQSRQSRR 212


>gi|313204261|ref|YP_004042918.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter
           propionicigenes WB4]
 gi|312443577|gb|ADQ79933.1| Exonuclease RNase T and DNA polymerase III [Paludibacter
           propionicigenes WB4]
          Length = 255

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 61/206 (29%), Gaps = 8/206 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +   DRI+EI   ++  +  +   T  + + P        +  +HGI D 
Sbjct: 10  VFFDLETTGTNIVTDRIVEIAYHKVSPNGRE--ETKSIRINPEMH-IPESSSAIHGIYDA 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F ++  E        +      N           L+      L   + +D   
Sbjct: 67  DVADCPTFKAVAKEIVRDIEGCDLAGYNSNRFDIPLLAEELLRADIDIDLMKRKFVDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +  +              ++         HGA  D+    +V    +    ++       
Sbjct: 127 VFHK----MEQRTLGAAYKFYCDKDLVGAHGAEADTLATYEVLKAQLDRYPELKNDVDFL 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214
                +          +         
Sbjct: 183 AKFTTQSNNVDFAGRIVYDDKGEEII 208


>gi|307717322|gb|ADN88714.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717324|gb|ADN88715.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717408|gb|ADN88757.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717412|gb|ADN88759.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717418|gb|ADN88762.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
          Length = 231

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 6/194 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +   F +     +   +AHNA FD+GFIN   +++       + +         
Sbjct: 59  SDPIEVVLQRFKE--WSADDILVAHNASFDMGFINTAYEKVGIPKAKNAVVDTLELARFL 116

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
                 + LN+L K++   I     H A+ D+   + +  K++    +++     +    
Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIEYHDSLND 174

Query: 193 FKEEKKTVPNISLL 206
           +  E          
Sbjct: 175 YMGEGDAYKRARPF 188


>gi|307545330|ref|YP_003897809.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
 gi|307217354|emb|CBV42624.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581]
          Length = 682

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 5/96 (5%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
           + FD ETTGL   + DR+I +GA  +++     + TF+  + P  R     +  +HG+ D
Sbjct: 491 VAFDTETTGLALREGDRLISLGACRIVNGRLLADETFEQHVNPQ-RPIPSASTAIHGLGD 549

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
           + +++ P+   +   F D+     A  +AHNA FD+
Sbjct: 550 QDVENAPTAEQVLPRFRDYVGS--AVLLAHNAAFDM 583


>gi|300812428|ref|ZP_07092858.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496595|gb|EFK31687.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 930

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 3/205 (1%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   +  DRII+ G   + D     +T+   + P+ RK       L GI  
Sbjct: 10  FAVVDLETTGTRKEEGDRIIQFGCAIVKDGEVV-KTYSFMMNPH-RKIPLAVTNLTGIDQ 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +  F     +  +   +        N  F                      ++  
Sbjct: 68  KMVAGQADFKHYAPKIREILQDTVFVAHNVNFDFPFLNYELTNAGFEALTCKAVDTVELA 127

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            IA    PS +    +          H++   A   + LL  +  K+            +
Sbjct: 128 KIAFPTLPSYKLRDLTASLEIKHANPHKADSDAYGTAVLLLKIIDKLASLPQATLNVLGS 187

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPL 212
                 ++    +  I+   R    
Sbjct: 188 LASGLIRDTGDVIKVIADQSRQSRR 212


>gi|328956370|ref|YP_004373703.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2]
 gi|328456694|gb|AEB07888.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2]
          Length = 977

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGL  ++D +IEI A  L     T R F+ F+ P  +    E ++L GI D  
Sbjct: 50  VVLDTETTGLSRQDDELIEISAAVLSGREVTER-FETFVRP-SKPIPAEIVELTGIRDAD 107

Query: 70  LKDKPS 75
           ++D P 
Sbjct: 108 VRDAPP 113


>gi|320533426|ref|ZP_08034111.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134363|gb|EFW26626.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 259

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 55/150 (36%), Gaps = 4/150 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL    D I+E+  V      +  R++   + P G         +HG+  E
Sbjct: 42  YAVVDLETTGLSPATDSILEVALVVTDAAGRVERSWSTLVDP-GAGVDVGPTHIHGLVAE 100

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L   P    +               +AHNA+FDVGF+   L              + T+
Sbjct: 101 ELIGAPGLDDVADLLVADLAG--RAVVAHNARFDVGFLTQALGTRGLLDRGARVPRVCTM 158

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK 157
             AR    +    L + C+  G+ I     
Sbjct: 159 EWARHFMTTPSRRLTTCCEVAGVEIGRHHN 188


>gi|307717320|gb|ADN88713.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717330|gb|ADN88718.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717378|gb|ADN88742.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717380|gb|ADN88743.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717394|gb|ADN88750.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717396|gb|ADN88751.1| DNA polymerase III [Listeria monocytogenes]
          Length = 231

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 85/194 (43%), Gaps = 7/194 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +   F +     +   +AHNA FD+GFIN   +++  +  + + +         
Sbjct: 59  SDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELARFL 116

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKTNEDR 191
                 + LN+L K++   I     H A+ D+   + +  K++    ++ N  F  + + 
Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHDSLND 174

Query: 192 FFKEEKKTVPNISL 205
           +  E          
Sbjct: 175 YMGEGDAYKRARPF 188


>gi|294083688|ref|YP_003550445.1| DNA polymerase III subunit epsilon [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663260|gb|ADE38361.1| DNA polymerase III, epsilon subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 730

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 8/170 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +  D+ETTGL  + DRI++IGA+ +          +   ++ + P G      +  +HGI
Sbjct: 34  VSLDLETTGLKPQTDRIVQIGAIGVDVAVAADRAEDDHIEMLVDP-GIAVPAASTAVHGI 92

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D  L D    +        F N+     + +N  FD+ F+  E +R   +      +  
Sbjct: 93  NDAMLADAKPIAVALPALRSFINK--RIILGYNIGFDLAFLTNEAKRQGLEWKWSGALCL 150

Query: 126 TLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                    P +   +  L        +    +H AL D+ + + VY KM
Sbjct: 151 RQLATVLLGPEAMLMIADLDALAAHYGVPVIGRHTALGDATITAQVYHKM 200


>gi|212712065|ref|ZP_03320193.1| hypothetical protein PROVALCAL_03142 [Providencia alcalifaciens DSM
           30120]
 gi|212685587|gb|EEB45115.1| hypothetical protein PROVALCAL_03142 [Providencia alcalifaciens DSM
           30120]
          Length = 214

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + K D ++EI A+ L      +   + T    + P  G    P AL+  G
Sbjct: 20  VVIDVETGGFNPKTDGLLEIAAITLKMDKDGWLAIDETLHFHVEPFEGANLEPSALEFTG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +     +   A  +AHNA FD  F+    +R    
Sbjct: 80  IDPTNPLRGAVSEYDALHAIFKTIRKGMKNTDCNRAIMVAHNANFDHSFVMNAAERSGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI    +  HGAL D++  + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVFGQTILAKACVTAGIPFDGKQAHGALYDTNRTALLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 KWKKLG 205


>gi|104774002|ref|YP_618982.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423083|emb|CAI97804.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|325125707|gb|ADY85037.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 930

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 3/205 (1%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   +  DRII+ G   + D     +T+   + P+ RK       L GI  
Sbjct: 10  FAVVDLETTGTRKEEGDRIIQFGCAIVKDGEVV-KTYSFMMNPH-RKIPLSVTNLTGIDQ 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +  F     +  +   +        N  F                      ++  
Sbjct: 68  KMVAGQADFKHYAPKIREILQDTVFVAHNVNFDFPFLNYELTNAGFEALTCKAVDTVELA 127

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            IA    PS +    +          H++   A   + LL  +  K+            +
Sbjct: 128 KIAFPTLPSYKLRDLTASLEIKHANPHKADSDAYGTAVLLLKIIDKLASLPQATLNVLGS 187

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPL 212
                 ++    +  I+   R    
Sbjct: 188 LASGLIRDTGDVIKVIADQSRQSRR 212


>gi|78186872|ref|YP_374915.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273]
 gi|78166774|gb|ABB23872.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273]
          Length = 236

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 8/182 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +VFD ETTG D K D +I IGAV +   S     +F+V +  +    S        + 
Sbjct: 48  RMVVFDTETTGFDLKTDGVISIGAVAINGLSINVADSFEVLVRQDRVGRSEAVAVHGLLK 107

Query: 67  DEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            +         +  +            +  +  +A   +         L     D    +
Sbjct: 108 KDIAGGAGEVEAAEAFLEYIGSSILVAQHASFDVAMLNRILSETFRIRLFNGVVDTASLA 167

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           + ++        H +    L+ LC+RYGI      +H A  D+ L + +  +++  G   
Sbjct: 168 KRLEKGPYYNLAHKAGEYRLDHLCQRYGIR--LYDRHTAAGDAFLTAQLLQRLLSKGRSA 225

Query: 182 NF 183
             
Sbjct: 226 GI 227


>gi|269960762|ref|ZP_06175133.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834426|gb|EEZ88514.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 238

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 63/168 (37%), Gaps = 2/168 (1%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGIT 66
             IV D+ETTGLDS+ D I+ IG V++ +      T   +++  + +     A+  H   
Sbjct: 50  NYIVLDLETTGLDSEEDLILSIGWVDIANGKVDLATSQHMYINSDSQIKPETAVINHITP 109

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
               +      ++ + F     +             +      + ++++ PL     +  
Sbjct: 110 QMLSEGVSIHDAMRAFFHAAKGKILVAHACVVETQFINQYLHRVFKLSEPPLVWLDTMCI 169

Query: 127 LSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               ++  +P    D+     R    +   + H AL D+   +++ + 
Sbjct: 170 EKHLQKAINPRDEIDVTLSGTRARYGLPEYNGHNALADAVATAELLLA 217


>gi|261335679|emb|CBH18673.1| exonuclease, putative [Trypanosoma brucei gambiense DAL972]
          Length = 366

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDY-------SKTNRTFQVFLCPNGRKNSPEALKL 62
           +  D+ETTG+    D II I  VELL           + R+F   + P  + +S      
Sbjct: 104 VCIDVETTGIAPTKDEIISIAVVELLFGAAGHNQWVLSGRSFHRLVKPTKKVSSSAYRVH 163

Query: 63  HGITDEFLKDKPS 75
              +    +  P 
Sbjct: 164 KLTSKVLERQPPF 176


>gi|149375575|ref|ZP_01893345.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter algicola
           DG893]
 gi|149360280|gb|EDM48734.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter algicola
           DG893]
          Length = 240

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 56/185 (30%), Gaps = 7/185 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGLD     I+ IG V   L   +   +    + P        ++ +HGIT 
Sbjct: 50  FVAVDFETTGLDPDKHSIVSIGVVPFTLGRVQLGGSRHWLVKPQL-PLHQTSVTIHGITH 108

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P    +  E       +       N +     +  + +   +        +   
Sbjct: 109 TDIDKAPDLDDVLDEILKSLAGRIPVVHYRNIERPFLNMALKWRIGEEIRFPVMDTMAIE 168

Query: 128 SIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +        S             +     + +   H    ++ + +    ++++   Q +
Sbjct: 169 AYLHPNRKRSWWQKLKGQQPISIRLADSRLRYGLPHYPPHNALVDALASAELLMAQVQHH 228

Query: 183 FGFKT 187
           F  +T
Sbjct: 229 FSPET 233


>gi|307717390|gb|ADN88748.1| DNA polymerase III [Listeria welshimeri]
          Length = 231

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 84/194 (43%), Gaps = 6/194 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +   F +     +   +AHNA FD+GFIN   +++  +  D + +         
Sbjct: 59  SDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKADNAVVDTLELARFL 116

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
                 + LN+L K++   I     H A+ D+   + +  K++    +++     +    
Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDINFHDSLND 174

Query: 193 FKEEKKTVPNISLL 206
           +  E +        
Sbjct: 175 YMGEGEAYKRARPF 188


>gi|221195203|ref|ZP_03568259.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626]
 gi|221185106|gb|EEE17497.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626]
          Length = 1031

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGL  K   +IEI A ++       R F+ F+ P  +   PE + L  ITDE 
Sbjct: 65  VVLDTETTGLSFKTCGLIEISAAKISGREIVER-FETFVDP-RKPIPPEIVALTHITDED 122

Query: 70  LKDKP 74
           +   P
Sbjct: 123 VAGAP 127


>gi|307717354|gb|ADN88730.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 6/194 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +  +F +     +   +AHNA FD+GFIN   +++  +    + +         
Sbjct: 59  SDPIDVVLKQFKE--WSGDNILVAHNASFDMGFINTAYEKVGIEKAKNAVVDTLELARFL 116

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
                 + LN+L K++   I     H A+ D+   + +  K++    +++     +    
Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIEFHDSLND 174

Query: 193 FKEEKKTVPNISLL 206
           +  E          
Sbjct: 175 YMGEGDAYKRARPF 188


>gi|56965684|ref|YP_177418.1| hypothetical protein ABC3926 [Bacillus clausii KSM-K16]
 gi|56911930|dbj|BAD66457.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 238

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 6/165 (3%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD+ET+G    + D I+ IGAV++      N  F   + P  +    E L+L G++ +
Sbjct: 55  VVFDLETSGFHPDQGDGILSIGAVKVTGNEVHNDHFYETIKPK-QPPCEEVLRLTGLSLQ 113

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P  + +   F+D      A  +AH+A  +  F+     +          I  T  
Sbjct: 114 ELDHSPPINDVLLRFYD--FAGAATLVAHHAAHERKFMRHATWQELGRTFTHRLIDTTFL 171

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                       L+  C  YGI I    +H AL D+ + + ++ K
Sbjct: 172 TNITAAHQQFQTLDEWCDAYGIAI--NQRHHALADARMTAKLWAK 214


>gi|107022085|ref|YP_620412.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116689029|ref|YP_834652.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|170732318|ref|YP_001764265.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|254246035|ref|ZP_04939356.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|105892274|gb|ABF75439.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647118|gb|ABK07759.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|124870811|gb|EAY62527.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|169815560|gb|ACA90143.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 375

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG    + RI EIG VE+     +  T+   + P G+   P   +L GI+D  
Sbjct: 16  VFVDLETTGGSLADHRITEIGVVEIGPLGVS--TWTSLVNP-GQAIPPFIQQLTGISDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D P+F+S+    ++  +     ++AHNA FD GF+ AE +R                 
Sbjct: 73  VRDAPTFASLAPALFERLDG--KLFVAHNASFDRGFLRAEFERAGLAFNPDVLCT-VRLS 129

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  SR+ L++L +R+G+     ++H AL D+ LL   + ++
Sbjct: 130 RALFPRESRHGLDALIERHGLV--PAARHRALADADLLWQFWRQL 172


>gi|332299738|ref|YP_004441659.1| Exonuclease RNase T and DNA polymerase III [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176801|gb|AEE12491.1| Exonuclease RNase T and DNA polymerase III [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 255

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 8/171 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFDIE TGLD  NDRIIE+  ++L+ D  +  RT      P       E+  +HGITDE
Sbjct: 10  VVFDIEATGLDITNDRIIELTILKLMPDGERIVRT--RRFNPE-MPIPAESTAIHGITDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P F +      +  +  +                  L+   +  L   + ID  +
Sbjct: 67  DVRDCPPFRACAKSLAELIDGCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLSRQHIDVQT 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           I  +  P           R+     H   HGA  D+    DV +  +    
Sbjct: 127 IFHKMEP----RTLEGAVRFYCHREHIGAHGAEADTIATLDVLLAQLDKYG 173


>gi|238762495|ref|ZP_04623465.1| Ribonuclease T [Yersinia kristensenii ATCC 33638]
 gi|238699140|gb|EEP91887.1| Ribonuclease T [Yersinia kristensenii ATCC 33638]
          Length = 226

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVEPFEGANLQPEALAFNG 90

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +         A  +AHNA FD  F+ A  +R +  
Sbjct: 91  IDPSNPLRGAVSEHDALHAIFKAVRKGLKDKGCNRAIIVAHNAHFDHSFVMAAAERASLK 150

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D+   + ++ +++ 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCELVN 210

Query: 177 GGSQIN 182
              ++ 
Sbjct: 211 RWKKLG 216


>gi|310659214|ref|YP_003936935.1| helicase, uvrd/rep/exonuclease family protein [Clostridium
           sticklandii DSM 519]
 gi|308825992|emb|CBH22030.1| putative Helicase, UvrD/REP/exonuclease family protein [Clostridium
           sticklandii]
          Length = 828

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 77/214 (35%), Gaps = 12/214 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD+ETTGLD K D+II+I A++   +     + F+ F+  +        +        
Sbjct: 469 VVFDVETTGLDIKKDKIIQIAALKGGKNGVL--QKFERFIKIDYSVGDSFKIHNISDEFL 526

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           F     + S+I          Q++  + HN  +D+  +   ++ I+ +    S  I    
Sbjct: 527 FQNGVDAKSAIDDFL---LFSQDSVIVGHNVSYDINILKENMKAIDLNIDKLSSKIFDTL 583

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY----IKMMVGG--SQIN 182
           I  RK                 +++H   H A+ D     +V      K++      Q  
Sbjct: 584 ILTRKTYPGFFSYKLGNLFKEFSLNHTPTHNAMDDVICTLEVLEKVVAKLLEKQAKRQAV 643

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           F    +           +  +S  KR + +    
Sbjct: 644 FTKYQDYFYPIARNLGILAELSKEKRPQDILHEA 677


>gi|163847184|ref|YP_001635228.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus
          J-10-fl]
 gi|222525025|ref|YP_002569496.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl]
 gi|163668473|gb|ABY34839.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus
          J-10-fl]
 gi|222448904|gb|ACM53170.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl]
          Length = 951

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+ETTGL S  D IIE+ AV    +   +R F+  + P  +    +  +L GI   
Sbjct: 6  YVAIDVETTGLQSGLDEIIEVAAVTFRGHEILDR-FEQLVRP-RQAVPLKITRLTGIDPA 63

Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE 93
           L   P F+ I ++   F   +   
Sbjct: 64 ALAQAPRFNEIGADLARFIGNRPIV 88


>gi|223946833|gb|ACN27500.1| unknown [Zea mays]
 gi|224030613|gb|ACN34382.1| unknown [Zea mays]
          Length = 315

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 9/121 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTG   ++DRIIE    +L+     N TFQ  + P     +     ++       
Sbjct: 117 VFDIETTGFSRRDDRIIEFAVRDLMGGK--NSTFQTLINPEKDVKNTYVHGINNSMLCRP 174

Query: 71  KDKPSFSSIFSEFWDFFNEQNA-----EWIAHN-AKFDVGFINAELQRINKDPLDPSRII 124
            D P F  I      +   +        W+AHN   FDV F+  E +R   +       +
Sbjct: 175 -DVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGDWLFV 233

Query: 125 D 125
           D
Sbjct: 234 D 234


>gi|288560027|ref|YP_003423513.1| exonuclease [Methanobrevibacter ruminantium M1]
 gi|288542737|gb|ADC46621.1| exonuclease [Methanobrevibacter ruminantium M1]
          Length = 261

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 49/167 (29%), Gaps = 1/167 (0%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I FD ET+GL+    +IIE+G + + D       +   +    R +S          D
Sbjct: 45  RIIFFDTETSGLNPNYCKIIELGMLVIEDGKII-EEYDKLINIGERIDSTITRITGITND 103

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + +  S   +  +  +           +             +    +       +  L
Sbjct: 104 MLIDEGVSEGDVAQDLKEKLISGTLMIAYNCQFDLSFAYGLLKRHYPHEAEAIIEDVKWL 163

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                                   I + + H A+ D+  L +V + +
Sbjct: 164 DPMTVFKDRKAYPHKFSDAVEHYDIRNVNFHRAIGDAKGLYEVCLSL 210


>gi|282878339|ref|ZP_06287131.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310]
 gi|281299525|gb|EFA91902.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310]
          Length = 904

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 2/105 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGL+   D I++I AV +         +F VF+    R    +  ++      
Sbjct: 523 VVFDTETTGLNVFEDDIVQIAAVRMRQGKVVPGSSFVVFME-TDRDIPQQLGEIENPLIA 581

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
            ++     S             ++  + HNA +D   ++  LQR 
Sbjct: 582 EMQRHVLHSHAEGLQMFMDYVGDSMLLGHNADYDYHILDFNLQRY 626


>gi|190895636|ref|YP_001985928.1| DNA polymerase III subunit epsilon [Rhizobium etli CIAT 652]
 gi|190699581|gb|ACE93665.1| probable polymerase protein, epsilon subunit [Rhizobium etli CIAT
           652]
          Length = 326

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 64/187 (34%), Gaps = 15/187 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+ ++D IIEIGAV     D         ++  L    R   PE  +L GI
Sbjct: 75  VVLDTETTGLNHRSDEIIEIGAVAFTFDDDGSIGDIVGIYGGLQQPSRPIPPEVTRLTGI 134

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD  ++ +     I         E     IAHNA FD  F  A                 
Sbjct: 135 TDAMVEGQ----VIDIRSLSDLIEPADLIIAHNAGFDRPFCEAFSPLFTGKAW------- 183

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             S++     +   +   L    G        H A+ D H L ++  +    G       
Sbjct: 184 ACSVSEIDWSARGFEGTKLGYLVGQAGYFHEGHRAVDDCHALLEILDRQQGEGESPFAEL 243

Query: 186 KTNEDRF 192
                R 
Sbjct: 244 YRASQRS 250


>gi|90415683|ref|ZP_01223617.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90333006|gb|EAS48176.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 528

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 6/106 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           KM  ++ D+ETTG  + + RIIEIG + +       R +Q F+ P      P   KL GI
Sbjct: 23  KM--VLLDLETTGGKATHHRIIEIGLLVIEQGKVLER-WQSFVDPETV-LPPFIQKLTGI 78

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
               L+  P FS +      + N+     +AHNA+FD GF+  E Q
Sbjct: 79  APSMLRGAPLFSEVAETLLTYLND--RTLVAHNARFDYGFLKNEFQ 122


>gi|320450504|ref|YP_004202600.1| putative DNA polymerase III subunit epsilon [Thermus scotoductus
           SA-01]
 gi|320150673|gb|ADW22051.1| putative DNA polymerase III, subunit epsilon [Thermus scotoductus
           SA-01]
          Length = 247

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL    + +IE+G V L    +  R+FQ  + P  R  SP   +L GI    
Sbjct: 74  VVLDLETTGLSPGLNEVIEVGLVRLEQGER--RSFQSLVRP-SRPPSPFIERLTGIRAWE 130

Query: 70  LKDKP 74
           L++ P
Sbjct: 131 LEEAP 135


>gi|261416372|ref|YP_003250055.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372828|gb|ACX75573.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326099|gb|ADL25300.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 188

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  V D+ETTG   +++RI+EIG + L+D S+   T+   + P G+  +P   +L GITD
Sbjct: 3   KFAVVDLETTGGHGEDNRIMEIG-IALMDGSEIVETYHALVDP-GKPITPFVRELTGITD 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           E +  +P F  I         +    ++AHN +FD  ++ AEL+R            
Sbjct: 61  EMVSGQPQFGVIAEHVAALLQD--RIFVAHNVQFDCKYMTAELKRCCIKFNPARLCT 115


>gi|254495210|ref|ZP_05108134.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152]
 gi|85819562|gb|EAQ40719.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152]
          Length = 1445

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 79/244 (32%), Gaps = 23/244 (9%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL    +          R I+I      +  +        + P G     +
Sbjct: 2   YLIFDTETTGLPKSWNAPITDTDNWPRCIQIAWQLHDEMGRVIEHNDFLIQPEGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ------- 111
           A ++HGI+ E  + +          ++   ++    +  N +FD+  +  E         
Sbjct: 62  AERIHGISTELAQQEGITLEEGLALFNEVLQKTKFVVGQNVEFDLNIMGCEFHRLATETN 121

Query: 112 --RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             ++        +      I   +    +    +   ++   I     H A  D    + 
Sbjct: 122 LNQLPVLDTCTEKTALLCQIPGGRGGKFKLPTLTELHKHLFGIDFAEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
            +++++            +++ F    ++    I L+           K+E D+  K ++
Sbjct: 182 CFLELIRIREFTKEELDVDQEYFKNFSEENPKPIQLIGLKHINL----KKESDKIRKRLE 237

Query: 230 TLGK 233
            L  
Sbjct: 238 KLKD 241


>gi|311696841|gb|ADP99714.1| exonuclease, RNase T and DNA polymerase III [marine bacterium HP15]
          Length = 242

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 5/135 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGLD+    I+ IG V   LD  +  +     + P        ++ +HGIT 
Sbjct: 52  FVALDFETTGLDANQHSIVSIGLVPFTLDGIQLGKARHWIVRPKL-PLHQTSITIHGITH 110

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P  + I  + +   N +       + +           +          +IDT+
Sbjct: 111 SDIDQAPDLNDILKDLFACLNGRIPVV---HYRNIERSFFDVALQWRLGEGIRFPLIDTM 167

Query: 128 SIARRKHPSSRNDLN 142
           +I    HP       
Sbjct: 168 AIEAHLHPDRNPSRW 182


>gi|160901390|ref|YP_001566972.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1]
 gi|160366974|gb|ABX38587.1| Exonuclease RNase T and DNA polymerase III [Delftia acidovorans
          SPH-1]
          Length = 212

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCP 50
           +  D ETTGLD + D+II IGAV ++     ++   ++ + P
Sbjct: 34 WVALDCETTGLDVRCDQIISIGAVRIVGERILSSERLELLVRP 76


>gi|237794676|ref|YP_002862228.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum Ba4 str. 657]
 gi|229260614|gb|ACQ51647.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum Ba4 str. 657]
          Length = 855

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 85/213 (39%), Gaps = 11/213 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +VFD+E+TG+++  D I++I  +++ +  +   +FQ FL P         +       
Sbjct: 494 NVVVFDVESTGINTTEDEIVQIAGIKINNKGEAIESFQRFLNPKKSVGDSYLVHGFSDQF 553

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                +     +          ++   + HN  FD+  +N+EL+R++ +        DTL
Sbjct: 554 LKENGENKKVVLKDFLK---FIKDTVIVGHNVTFDISILNSELERLSLEKASFKTYYDTL 610

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF---- 183
            IARR +PS  N       +       +S H A+ D     D+ + M+    +       
Sbjct: 611 DIARRFYPSLTNHKLETLSKL-FNTETKSSHDAMDDILATKDILMVMLREKVKPTIINRM 669

Query: 184 ---GFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
              G    + +   EE   +  +S +K  K + 
Sbjct: 670 VVYGKYIKKFQPIYEEIANLKKLSYIKNPKDII 702


>gi|328943837|ref|ZP_08241302.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Atopobium vaginae DSM 15829]
 gi|327491806|gb|EGF23580.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Atopobium vaginae DSM 15829]
          Length = 337

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 3/142 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++ DIET+GL+  +D+IIEIGA+ + D    +  +Q  +  +    SP   +L G+TD
Sbjct: 169 KFVILDIETSGLNETDDKIIEIGAIRICDKQVDD--YQCLIKRDSLNLSPAITQLTGLTD 226

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L ++    ++       F       + +N  FD+ FIN EL+ +N++ LD   I    
Sbjct: 227 IELANRGVNPNLALNGLKQFIGHLPV-LGYNIAFDMRFINNELRSMNEELLDNREIDVMR 285

Query: 128 SIARRKHPSSRNDLNSLCKRYG 149
            I + K       L+++ K YG
Sbjct: 286 FIKKEKMFLESYALDNVLKVYG 307


>gi|170744636|ref|YP_001773291.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
 gi|168198910|gb|ACA20857.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 296

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 67/237 (28%), Gaps = 29/237 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCPNGRKNSPEALKLHGI 65
           V D ETTGLD   D +IE+G V           +    F     P G+       +L GI
Sbjct: 43  VLDTETTGLDPACDEVIELGIVAFTYGQSGRIYRVRHRFNQLHQP-GKPIPEAVTRLTGI 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD  +  K                +    IAHNA+FD            +     S    
Sbjct: 102 TDADVAGKRI----DDAAVAALAAKARVVIAHNARFDRRMCEVRWPFFAELNWACSCHQI 157

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS------ 179
                  +       L    + +         H A+ D   L  +  + +          
Sbjct: 158 DWRDEGHEAARLGGLLADHGRFHNG-------HRAIDDCEALLWLLAQPLRRSGRLALAA 210

Query: 180 ------QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
                 +       ++  F  + +    N     R +  +  + + +++     +  
Sbjct: 211 LLEAARRPTVRLWASDAPFALKNRLKDRNYRWSSRRRCWYIDLDEAQIEIERSFLSR 267


>gi|269926118|ref|YP_003322741.1| DNA polymerase III, epsilon subunit [Thermobaculum terrenum ATCC
          BAA-798]
 gi|269789778|gb|ACZ41919.1| DNA polymerase III, epsilon subunit [Thermobaculum terrenum ATCC
          BAA-798]
          Length = 960

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 2/85 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+E TG D + D II+IGAV+        R +   + P  +       +L GI   
Sbjct: 7  FVALDLEMTGHDPEQDEIIQIGAVKFTQTRVLGR-WGTLVRPKVK-LPFRIARLTGINPN 64

Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE 93
           L   P F ++  +   F  +    
Sbjct: 65 DLNKAPVFDAVKDKLRSFVGDHPIV 89


>gi|319944252|ref|ZP_08018528.1| exonuclease [Lautropia mirabilis ATCC 51599]
 gi|319742547|gb|EFV94958.1| exonuclease [Lautropia mirabilis ATCC 51599]
          Length = 230

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 37/136 (27%), Gaps = 1/136 (0%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+ + D II IGA  ++     T    ++ + P    +            
Sbjct: 47  WVALDCETTGLNVRQDEIIAIGATRIVGRRLMTRERLELLVRPEREVSPDSVAVHRLRAQ 106

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +     P   ++        +     +        +         +              
Sbjct: 107 DVADGLPLCEAMERLLMFIGSRPLVGYYLEFDVAMIDRALKRCFGLTLPQRKIEVSAMYY 166

Query: 128 SIARRKHPSSRNDLNS 143
               R+ P  +   N+
Sbjct: 167 DWRFRQLPPYQQHDNA 182


>gi|313623167|gb|EFR93428.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           innocua FSL J1-023]
          Length = 928

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            K R IV D+ETTG  + + DRII+  A  +    +   T+  FL P  +       +L 
Sbjct: 2   KKKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYSTFLNPE-KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           GI+ + +K+ P F  +         +    ++AHN  FD  F+  E+
Sbjct: 60  GISPKDVKNAPLFEDVAPIIASLLED--TIFVAHNVSFDWTFLEREM 104


>gi|227485452|ref|ZP_03915768.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227236582|gb|EEI86597.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 295

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 6/150 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I+ D+ETTGLD  NDRIIEIGA+++    K N+ +   +     K S +   + GI+DE
Sbjct: 129 YIIIDLETTGLDPINDRIIEIGAIKI---GKENKEYSSIIW-QDIKLSEKISNITGISDE 184

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K      +  +EF DF  E     + +N  FD+ FIN  L+R  K  +          
Sbjct: 185 DIKKGKDEKNAINEFIDFIGE--DTLVGYNINFDIKFINESLKRQEKPKIKNMTYDVMQY 242

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKH 158
           +   K       L ++ K YGI  +   + 
Sbjct: 243 VKNDKLFLKNYKLETVIKEYGINKNVPHRA 272


>gi|16801079|ref|NP_471347.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria innocua Clip11262]
 gi|16414514|emb|CAC97243.1| dinG [Listeria innocua Clip11262]
          Length = 928

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            K R IV D+ETTG  + + DRII+  A  +    +   T+  FL P  +       +L 
Sbjct: 2   KKKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYSTFLNPE-KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           GI+ + +K+ P F  +         +    ++AHN  FD  F+  E+
Sbjct: 60  GISPKDVKNAPLFEDVAPIIASLLED--TIFVAHNVSFDWTFLEREM 104


>gi|322392646|ref|ZP_08066106.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
 gi|321144638|gb|EFX40039.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
          Length = 1463

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 7/211 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNIIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLKQVLQEFQEFCQD--TVLVAHNATFDVGFMNANYERHGLPKITQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185
                    R+ L  L KR+G+     H + + A     LL     ++       N    
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALDHHHMANYDAEATGRLLFIFIKEVAEKHGVTNLARL 600

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +       +K  V + ++  +++     I
Sbjct: 601 NIDLISPDSYKKARVKHATIYVKNQIGLKNI 631


>gi|158424105|ref|YP_001525397.1| putative exonuclease [Azorhizobium caulinodans ORS 571]
 gi|158330994|dbj|BAF88479.1| putative exonuclease [Azorhizobium caulinodans ORS 571]
          Length = 334

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 74/232 (31%), Gaps = 17/232 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL--LDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGLD   D +IE+G V     +          F  L       SP   KL GI
Sbjct: 83  VIVDTETTGLDHTRDEVIELGMVAFTYREGGAIGDVVDTFSALREPTVPISPVITKLTGI 142

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E +  +    SI  E    F +  +  IAHNA+FD  F    ++  +  P   S +  
Sbjct: 143 TPEMVAGQ----SIDLEAAARFIQPASIVIAHNARFDRPFCEHLVEGFDVKPWACSVVEV 198

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS-----HLLSDVYIKMMVGGSQ 180
             +    +       +      +    +    H  L              + +++    +
Sbjct: 199 PWADFGFEGTKLGYLIGQCGMFHNGHRAVDDCHALLEVLAAPLKEATGTAFGRLLETARR 258

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
             F        F  ++               R K  +  +  E L E    +
Sbjct: 259 PRFRVWAENSPFDMKDALKARGYRWNDGSDGRPKSWYREVEDEALGEEIAFL 310


>gi|329946199|ref|ZP_08293812.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527797|gb|EGF54788.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 276

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 57/150 (38%), Gaps = 4/150 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL    D I+E+  V      +  R++   + P G        ++HG+  E
Sbjct: 56  YAVVDLETTGLSPTTDSILEVALVLTDAAGRVERSWSTLIDP-GAGVDVGPTRIHGLVAE 114

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127
            L   P    +               +AHNA+FDVGF+      R   D       + T+
Sbjct: 115 ELSGAPGLDDVADLLVADLAG--RAVVAHNARFDVGFLTQALGARGLLDRGARVPRVCTM 172

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK 157
             AR    +    L + C+  G+ I     
Sbjct: 173 EWARHFMTTPSRRLTTCCEVAGVEIGRHHN 202


>gi|242041211|ref|XP_002468000.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor]
 gi|241921854|gb|EER94998.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor]
          Length = 583

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTG   + DRIIE    +L+     N TFQ  + P     +     +        
Sbjct: 385 VFDIETTGFSRREDRIIEFAVRDLMGGK--NSTFQTLINPEKEVRNAYVHGISNSMLCRP 442

Query: 71  KDKPSFSSIFSEFWDFFNEQNA 92
            D P F  +      +   +  
Sbjct: 443 -DVPRFGELVPILLQYVWSRQM 463


>gi|29374711|ref|NP_813863.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
 gi|227555735|ref|ZP_03985782.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
 gi|256761903|ref|ZP_05502483.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|29342169|gb|AAO79935.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
 gi|227175140|gb|EEI56112.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
 gi|256683154|gb|EEU22849.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|315573941|gb|EFU86132.1| exonuclease, DNA polymerase III, epsilon subunit family protein
          [Enterococcus faecalis TX0309B]
 gi|315581892|gb|EFU94083.1| exonuclease, DNA polymerase III, epsilon subunit family protein
          [Enterococcus faecalis TX0309A]
          Length = 289

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I FDIETTGLD   D +I+I A   +D  +    F   +  +      E  KL GIT++
Sbjct: 8  FIAFDIETTGLDFHQDAVIQISAARYVDGIEV-DYFDTLVNSDY--IPDEITKLTGITND 64

Query: 69 FLKDKPSFSSIFSEFWDFF 87
           + + P+   +    +D+ 
Sbjct: 65 QVLNAPTLDEVMPYLFDYL 83


>gi|295693537|ref|YP_003602147.1| DNA polymerase iii [Lactobacillus crispatus ST1]
 gi|295031643|emb|CBL51122.1| DNA polymerase III [Lactobacillus crispatus ST1]
          Length = 318

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 3/160 (1%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIETTGL    DRI E+G V++ +    ++ +   +  +   + P  +       E   
Sbjct: 36  LDIETTGLYPYRDRITELGGVKVRNGQIVDQ-YTNLVKFSKNNSVPAFITKLNGITEEQI 94

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
            K    +  +         +   I +N  FD+ F+    Q+     LD   +        
Sbjct: 95  VKEGIPAEQAIREFREFIGDDVIIGYNVNFDLNFLYDLSQKYGLPVLDNDYVDVLRLART 154

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                  N L    +R GI       H  L DS     VY
Sbjct: 155 YYPRERHNRLLDCMQRAGIA--QVEAHHGLQDSLDTIKVY 192


>gi|323699453|ref|ZP_08111365.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio sp.
           ND132]
 gi|323459385|gb|EGB15250.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
           desulfuricans ND132]
          Length = 178

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 5/159 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D ET   D K D    +G V +       R +   + P   + +P  +++HGI  
Sbjct: 8   RFVAIDFET--ADPKRDSACALGIVVVDRGEIVARDY-RLIRPPRARFNPFCVRVHGIHW 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + ++PSF        +         +AHNA FD   ++   +            + T+
Sbjct: 65  EDVCNEPSF-GDLWPELEVHFRGADFLVAHNAAFDKSVLHTCCKESGWTAP-EQPFLCTV 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            +AR+    S N L ++C+  GI ++H +         L
Sbjct: 123 QLARKTWELSCNKLPNVCEYLGIELNHHNAASDAEACAL 161


>gi|282856872|ref|ZP_06266130.1| DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens
           W5455]
 gi|282585290|gb|EFB90600.1| DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens
           W5455]
          Length = 196

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 6/177 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             DIETTGL      I+EI A+++     + R+FQ+ + P GR    +   +HGI D  +
Sbjct: 12  ALDIETTGLSPAFCGIVEIAALKIFPDG-SQRSFQMLVDP-GRPIPRDVSAIHGIDDAMV 69

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + +PS +   +    F     +  + HNA FD+ F+N  ++R       P+         
Sbjct: 70  RGQPSAADAVAALVSFVGP--SPLVLHNAPFDMSFLNPVVRRQRLQWDSPAVFDTLRLSR 127

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +     +   L SL + +         H AL D      ++ +++     ++  F  
Sbjct: 128 QAFPGLNSYSLESLSRFF--DFDAGGHHRALADCRYCVQLFARILRKIRGLDMDFAA 182


>gi|259503450|ref|ZP_05746352.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041]
 gi|259168528|gb|EEW53023.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041]
          Length = 929

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 12  FDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+ETTG      DRII++G V + D    NR F+  + P  R      ++L GI +  +
Sbjct: 2   VDLETTGTSVNHGDRIIQVGCVLVQDGQVINR-FETKINPRER-IPRAVVQLTGIQERDV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
           +  P F  +    +             N  F
Sbjct: 60  RKAPLFEDVAGTIYSLLTGTIFVAHNVNFDF 90


>gi|195646046|gb|ACG42491.1| DNA polymerase III subunit epsilon [Zea mays]
          Length = 315

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 9/121 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTG   ++DRIIE    +L+     N TFQ  + P     +     ++       
Sbjct: 117 VFDIETTGFSRRDDRIIEFAVRDLMGGK--NSTFQTLINPEKDVKNTYVHGINNSMLCRP 174

Query: 71  KDKPSFSSIFSEFWDFFNEQNA-----EWIAHN-AKFDVGFINAELQRINKDPLDPSRII 124
            D P F  I      +   +        W+AHN   FDV F+  E +R   +       +
Sbjct: 175 -DVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGDWLFV 233

Query: 125 D 125
           D
Sbjct: 234 D 234


>gi|238792291|ref|ZP_04635926.1| Ribonuclease T [Yersinia intermedia ATCC 29909]
 gi|238728528|gb|EEQ20047.1| Ribonuclease T [Yersinia intermedia ATCC 29909]
          Length = 226

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVEPFEGANLQPEALAFNG 90

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +         A  +AHNA FD  F+ A  +R +  
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGLKDQGCNRAIIVAHNANFDHSFVMAAAERASLK 150

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D+   + ++ +++ 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCELVN 210

Query: 177 GGSQIN 182
              ++ 
Sbjct: 211 RWKKLG 216


>gi|307717400|gb|ADN88753.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 6/194 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +   F +     +   +AHNA FD+GFIN   +++     + + +         
Sbjct: 59  SDPIDVVLKRFKE--WSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLELARFL 116

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
                 + LN+L K++   I     H A+ D+   + +  K++    +++     +    
Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLGWKLIKDAKEMHDIDYHDSLND 174

Query: 193 FKEEKKTVPNISLL 206
           +  E          
Sbjct: 175 YMGEGDAYKRARPF 188


>gi|307717344|gb|ADN88725.1| DNA polymerase III [Listeria innocua]
 gi|307717350|gb|ADN88728.1| DNA polymerase III [Listeria innocua]
 gi|307717352|gb|ADN88729.1| DNA polymerase III [Listeria innocua]
 gi|307717386|gb|ADN88746.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 84/194 (43%), Gaps = 6/194 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +  +F +     +   +AHNA FD+GFIN   +++  +  + + +         
Sbjct: 59  SDPIDVVLKQFRE--WSGDDILVAHNASFDMGFINTAYEKVGLEKANNAVVDTLELARFL 116

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
                 + LN+L K++   I     H A+ D+   + +  K++    +++     +    
Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIEFHDSLND 174

Query: 193 FKEEKKTVPNISLL 206
           +  E          
Sbjct: 175 YMGEGDAYKRARPF 188


>gi|307326641|ref|ZP_07605834.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306887625|gb|EFN18618.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 638

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 9/175 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+ET+GL ++ DR++ +  + +  D  +T   F   L P      P  +K+HG+T E L
Sbjct: 23  VDVETSGLMARRDRVLSVAVITVGPDGEQTGE-FSTLLNPG---CDPGPVKVHGLTVERL 78

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P+F  +         +     +AHNA+FD  F+  E  R         R+       
Sbjct: 79  QGAPTFDQVAGRIGAMLQD--RVLVAHNAQFDYDFLAHEFARARTWLPVSQRLCTLALNR 136

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +   P+    L +L   YGI       H AL D+ +L+ +    +   +Q++   
Sbjct: 137 QVDPPTGDMKLGTLAAHYGIPQQRA--HDALDDTRVLAGILRASLREAAQLDLPL 189


>gi|227877650|ref|ZP_03995697.1| DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256850746|ref|ZP_05556169.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|227862746|gb|EEJ70218.1| DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256712459|gb|EEU27457.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
          Length = 318

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 3/160 (1%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIETTGL    DRI E+G V++ +    ++ +   +  +   + P  +       E   
Sbjct: 36  LDIETTGLYPYRDRITELGGVKVRNGQIVDQ-YTNLVKFSKNNSVPAFITKLNGITEAQI 94

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
            K    +  +         +   I +N  FD+ F+    Q+     LD   +        
Sbjct: 95  VKEGIPAEQAIREFREFIGDDVIIGYNVNFDLNFLYDLSQKYGLPVLDNDYVDVLRLART 154

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                  N L    +R GI       H  L DS     VY
Sbjct: 155 YYPRERHNRLLDCMQRAGIA--QVEAHHGLQDSLDTIKVY 192


>gi|319945650|ref|ZP_08019902.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
 gi|319748249|gb|EFW00491.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
          Length = 1463

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPISAFTTDLTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++      +  EF +F  +  A  +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVRNAKPLKQVLEEFQEFCQD--AVLVAHNATFDVGFMNANYERHGLPKITQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|254360642|ref|ZP_04976791.1| exoribonuclease T [Mannheimia haemolytica PHL213]
 gi|153091182|gb|EDN73187.1| exoribonuclease T [Mannheimia haemolytica PHL213]
          Length = 215

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET GL+++ D ++E+ A+ L      Y   ++     + P  G   +PE+LK +G
Sbjct: 23  VVIDVETAGLNAQTDALLELAAITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNG 82

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +             P    +  +       Q A  +AHNA FD GF+ A ++RIN  
Sbjct: 83  IDIDNPLRGAVAENIAIPEMFKMVRKAMKEQGCQRAVIVAHNAAFDQGFLQAAIKRINAK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    +  H AL D+   ++++  M+ 
Sbjct: 143 RDPFHPFAMFDTATLAGFMYGQTVLVKACQVAKIPFDGKQAHSALYDTERTAELFCAMVN 202

Query: 177 GGSQIN 182
               + 
Sbjct: 203 RLKDLG 208


>gi|257876620|ref|ZP_05656273.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
 gi|257810786|gb|EEV39606.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
          Length = 1449

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
            IVFD+ETTGL +  D IIE+ AV +   +    +F  F+ P  
Sbjct: 423 YIVFDVETTGLSAVYDTIIELAAVRMHKGN-VEASFDEFIDPGH 465


>gi|307717334|gb|ADN88720.1| DNA polymerase III [Listeria seeligeri]
 gi|307717336|gb|ADN88721.1| DNA polymerase III [Listeria seeligeri]
 gi|307717366|gb|ADN88736.1| DNA polymerase III [Listeria seeligeri]
 gi|307717402|gb|ADN88754.1| DNA polymerase III [Listeria seeligeri]
 gi|307717406|gb|ADN88756.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 6/194 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +   F +     +   +AHNA FD+GFIN   +++     + + +         
Sbjct: 59  SDPIDVVLKRFKE--WSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLELARFL 116

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
                 + LN+L K++   I     H A+ D+   + +  K++    +++     +    
Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLGWKLIKDAKEMHDIDYHDSLND 174

Query: 193 FKEEKKTVPNISLL 206
           +  E          
Sbjct: 175 YMGEGDAYKRARPF 188


>gi|262047863|ref|ZP_06020812.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|312976690|ref|ZP_07788439.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
 gi|260571856|gb|EEX28428.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|310896018|gb|EFQ45083.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
          Length = 318

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 3/160 (1%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIETTGL    DRI E+G V++ +    ++ +   +  +   + P  +       E   
Sbjct: 36  LDIETTGLYPYRDRITELGGVKVRNGQIVDQ-YTNLVKFSKNNSVPAFITKLNGITEEQI 94

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
            K    +  +         +   I +N  FD+ F+    Q+     LD   +        
Sbjct: 95  GKEGIPAEQAIREFREFIGDDVIIGYNVNFDLNFLYDLSQKYGLPVLDNDYVDVLRLART 154

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                  N L    +R GI       H  L DS     VY
Sbjct: 155 YYPRERHNRLLDCMQRAGIA--QVEAHHGLQDSLDTIKVY 192


>gi|240947949|ref|ZP_04752376.1| ribonuclease T [Actinobacillus minor NM305]
 gi|240297743|gb|EER48202.1| ribonuclease T [Actinobacillus minor NM305]
          Length = 216

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET GL+++ D ++EI A+ +    +     ++     + P  G   + ++LK +G
Sbjct: 21  VIIDVETAGLNAQTDALLEIAAITVKMDENGYLVPDQKCHYHIQPFEGANINQDSLKFNG 80

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +             P    +  +       Q A  +AHNA FD GF+ A  +RIN  
Sbjct: 81  IDIDNPLRGAVPENIAIPEMFKMVRKAMKEQGCQRAVIVAHNAAFDQGFLQAAAKRINAK 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    +  H AL D+   ++++  M+ 
Sbjct: 141 RDPFHPFAMFDTATLAGFMYGQTVLVKACQIANIAFDGKQAHSALYDTEKTTELFCTMVN 200

Query: 177 GGSQIN 182
               + 
Sbjct: 201 RLKDLG 206


>gi|115460648|ref|NP_001053924.1| Os04g0623400 [Oryza sativa Japonica Group]
 gi|113565495|dbj|BAF15838.1| Os04g0623400 [Oryza sativa Japonica Group]
          Length = 282

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 16/190 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTG   K+ RI+E    +L      N TF+  + P  R        L  I  + +
Sbjct: 64  VFDLETTGYFHKDHRIVEFALCDLSGGK--NSTFETLVNPE-RTVPDYVEHLIKIGTDLV 120

Query: 71  KDK--PSFSSIFSEFWDFFNEQNAE-----WIAHN-----AKFDVGFINAELQRINKDPL 118
                P FS +      F   + A      W+AHN     A+F     +     +  D L
Sbjct: 121 CRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPLPADWL 180

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               ++    + + +    R  L +L + YGI       H A+ D  +LS V+ KM    
Sbjct: 181 FFDTLLLAKKMVKAEGKKRRTSLEALREHYGIVSH-DDAHRAMRDVMILSQVFQKMTFDL 239

Query: 179 SQINFGFKTN 188
              N      
Sbjct: 240 KLTNEELINE 249


>gi|119383203|ref|YP_914259.1| exonuclease, RNase T and DNA polymerase III [Paracoccus
           denitrificans PD1222]
 gi|119372970|gb|ABL68563.1| Exonuclease, RNase T and DNA polymerase III [Paracoccus
           denitrificans PD1222]
          Length = 303

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 60/232 (25%), Gaps = 5/232 (2%)

Query: 3   RKNKMRKI-VFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCPNGRKNSP 57
           R  +MR + + D ETTGLD   DR++EI      V+           + +    GR   P
Sbjct: 48  RSTEMRIVAIIDTETTGLDPTTDRLVEIAIERLSVDARGRIIEMEHPRSWREDPGRSMPP 107

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
               L G+TD  L                 +   A   A +  F      A   +     
Sbjct: 108 RLTLLTGLTDADLAGCAFDDESIVAQLGEADVIIAHNAAFDRPFVDVRFPALQHQAWGCS 167

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L     +      R                      H         +     +   ++  
Sbjct: 168 LTQLDWLTLGFDGRALGHLLFQAGWYFKGHRAEQDVHALATLLGSVAGDGRTIMSHLLER 227

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
             + NF        F  ++             +  +  I  + LD     + 
Sbjct: 228 CDRPNFRIAAIGAPFNAKDLLKSRGYRWDPTHRYWWREIDADVLDGEKDWLD 279


>gi|256844192|ref|ZP_05549679.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|256614097|gb|EEU19299.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
          Length = 318

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 3/160 (1%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIETTGL    DRI E+G V++ +    ++ +   +  +   + P  +       E   
Sbjct: 36  LDIETTGLYPYRDRITELGGVKVRNGQIVDQ-YTNLVKFSKNNSVPAFITKLNGITEAQI 94

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
            K    +  +         +   I +N  FD+ F+    Q+     LD   +        
Sbjct: 95  VKEGIPAEQAIREFREFIGDDVIIGYNVNFDLNFLYDLSQKYGLPVLDNDYVDVLRLART 154

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                  N L    +R GI       H  L DS     VY
Sbjct: 155 YYPRERHNRLLDCMQRAGIA--QVEAHHGLQDSLDTIKVY 192


>gi|229544880|ref|ZP_04433605.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX1322]
 gi|256616762|ref|ZP_05473608.1| exonuclease [Enterococcus faecalis ATCC 4200]
 gi|256854034|ref|ZP_05559399.1| exonuclease [Enterococcus faecalis T8]
 gi|256963842|ref|ZP_05568013.1| exonuclease [Enterococcus faecalis HIP11704]
 gi|257081701|ref|ZP_05576062.1| exonuclease [Enterococcus faecalis E1Sol]
 gi|257420127|ref|ZP_05597121.1| exonuclease [Enterococcus faecalis T11]
 gi|307271788|ref|ZP_07553059.1| exonuclease [Enterococcus faecalis TX0855]
 gi|307278717|ref|ZP_07559784.1| exonuclease [Enterococcus faecalis TX0860]
 gi|307290260|ref|ZP_07570176.1| exonuclease [Enterococcus faecalis TX0411]
 gi|312900097|ref|ZP_07759413.1| exonuclease [Enterococcus faecalis TX0470]
 gi|229309981|gb|EEN75968.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX1322]
 gi|256596289|gb|EEU15465.1| exonuclease [Enterococcus faecalis ATCC 4200]
 gi|256710977|gb|EEU26020.1| exonuclease [Enterococcus faecalis T8]
 gi|256954338|gb|EEU70970.1| exonuclease [Enterococcus faecalis HIP11704]
 gi|256989731|gb|EEU77033.1| exonuclease [Enterococcus faecalis E1Sol]
 gi|257161955|gb|EEU91915.1| exonuclease [Enterococcus faecalis T11]
 gi|306498681|gb|EFM68182.1| exonuclease [Enterococcus faecalis TX0411]
 gi|306504578|gb|EFM73781.1| exonuclease [Enterococcus faecalis TX0860]
 gi|306511666|gb|EFM80665.1| exonuclease [Enterococcus faecalis TX0855]
 gi|311292732|gb|EFQ71288.1| exonuclease [Enterococcus faecalis TX0470]
 gi|315030443|gb|EFT42375.1| exonuclease [Enterococcus faecalis TX4000]
 gi|315032587|gb|EFT44519.1| exonuclease [Enterococcus faecalis TX0017]
 gi|315143870|gb|EFT87886.1| exonuclease [Enterococcus faecalis TX2141]
 gi|315148698|gb|EFT92714.1| exonuclease [Enterococcus faecalis TX4244]
 gi|315151771|gb|EFT95787.1| exonuclease [Enterococcus faecalis TX0012]
 gi|315170466|gb|EFU14483.1| exonuclease [Enterococcus faecalis TX1342]
 gi|315174930|gb|EFU18947.1| exonuclease [Enterococcus faecalis TX1346]
 gi|327535953|gb|AEA94787.1| exonuclease [Enterococcus faecalis OG1RF]
          Length = 188

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 7/167 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M    FD ET            I  V++ +    +  F   + P          ++HGI 
Sbjct: 12  MNFYAFDFET--ASYDKHSACSIAIVKVENSRIVDE-FYTLIKPETPFF-WRNTQIHGIH 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + + P F     +      + N   +AHNA FD   +   L     +  +   +   
Sbjct: 68  ESDVVNAPKF-PEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 126

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +  +       + LN++C+   IT    + H AL DS   +++ ++
Sbjct: 127 KTSRKLFPEFPNHKLNTVCENLNIT--LNNHHDALEDSRACAEILLQ 171


>gi|300776313|ref|ZP_07086171.1| exonuclease [Chryseobacterium gleum ATCC 35910]
 gi|300501823|gb|EFK32963.1| exonuclease [Chryseobacterium gleum ATCC 35910]
          Length = 254

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 71/193 (36%), Gaps = 6/193 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           +FD+ETTG +   DRI+EI  +  ++   +  +    + P       E  ++HGI DE +
Sbjct: 11  IFDLETTGTNIGKDRIVEI-CILKVNPDASRESKTWRVNPE-MPIPKECSEIHGIYDEDV 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD P+F  I ++  +  +  +      N           L+      L+  R++D  +I 
Sbjct: 69  KDAPTFRDIAAKIMEMISGSDLGGFNSNRFDVPLLAEELLRVGMDFDLNKFRLVDAQTIF 128

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
            +K P           ++    +  + H A  D     +V    +     I        +
Sbjct: 129 HKKEP----RNLGAAYQFYCGKTLENAHSAEADVMATFEVLDAQVGKYDDIPNEIAPLSE 184

Query: 191 RFFKEEKKTVPNI 203
             F  +   +   
Sbjct: 185 FTFHNKNADLAGF 197


>gi|74026182|ref|XP_829657.1| exonuclease [Trypanosoma brucei TREU927]
 gi|70835043|gb|EAN80545.1| exonuclease, putative [Trypanosoma brucei]
          Length = 366

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDY-------SKTNRTFQVFLCPNGRKNSPEALKL 62
           +  D+ETTG+    D II I  VELL           + R+F   + P  + +S      
Sbjct: 104 VCIDVETTGIAPTKDEIISIAVVELLFGAAGHNQWELSGRSFHRLVKPTKKVSSSAYRVH 163

Query: 63  HGITDEFLKDKPS 75
              +    +  P 
Sbjct: 164 KLTSKVLERQPPF 176


>gi|257867714|ref|ZP_05647367.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257874041|ref|ZP_05653694.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
 gi|257801797|gb|EEV30700.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257808205|gb|EEV37027.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
          Length = 1449

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
            IVFD+ETTGL +  D IIE+ AV +   +    +F  F+ P  
Sbjct: 423 YIVFDVETTGLSAVYDTIIELAAVRMHKGN-VEASFDEFIDPGH 465


>gi|331002519|ref|ZP_08326037.1| hypothetical protein HMPREF0491_00899 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410335|gb|EGG89769.1| hypothetical protein HMPREF0491_00899 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 235

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 89/231 (38%), Gaps = 15/231 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             I  D+ET+G+  ++D+IIE+G +++ D   T  TF   + P    N  E L+L GI  
Sbjct: 5   NYIAIDLETSGIKLRSDKIIEVGLLKIKDSHIT-DTFSCLINPEIEIN-EEILRLTGIKK 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L +  S + +     +F  + +   + HN  FD  FI  E  R               
Sbjct: 63  RELYNAESINEVIGHIVEFCEDYD--LLGHNTVFDYSFIKREASRAGLVFDKKGLDT-YK 119

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
              +      + +L   C+ +GI    ++ H A  D++    ++ K+M      NF  + 
Sbjct: 120 LCKKILPADIKKNLTDACRYFGIE--RKNPHRAFSDAYYTHLLFQKIMENFPDFNFSPEH 177

Query: 188 NEDRFFKEEKKTVPNISLLKR--------DKPLFTRITKEELDEHDKTIQT 230
            E +  K           L++         K     +++ E       I++
Sbjct: 178 MEVKLKKFIPIRKRTKEDLQKLLNCHRIGYKVNIDLLSESEAKRMMDKIKS 228


>gi|318041263|ref|ZP_07973219.1| putative DNA polymerase III, epsilon subunit [Synechococcus sp.
           CB0101]
          Length = 304

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 14/222 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R ++ D ETTGLD + DR IE+GAV      ++  +    L P          +     D
Sbjct: 74  RLLILDTETTGLDPQRDRCIELGAVLFDVPRRSVLSQVSLLLP----CEQNPAQAVNGID 129

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L  +P       ++++     +   +AHNA FD  +    +  +          ++ +
Sbjct: 130 PRLTQQPQPWQQGLQWFEALLAASDVVVAHNAAFDRQWFG--IAPLPAIDKPWLCSMEDI 187

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQINFGF 185
                +H  S   +  L   Y + +     H AL D   L+ V+ +   +    Q     
Sbjct: 188 RWPADRHLRSNPSVRDLALAYSVPVWAA--HRALTDCIYLAQVFERCSDLEPLLQQGLEP 245

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP----LFTRITKEELDE 223
           +         E++     +  + ++P       R+++ E   
Sbjct: 246 RRLYRARLSYEERHKAREAGFRWNEPVSGAWSRRLSEREAAL 287


>gi|294339674|emb|CAZ88034.1| putative protein fusion of DNA polymerase III, epsilon subunit and
           Excinuclease ABC, C subunit [Thiomonas sp. 3As]
          Length = 469

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 4/100 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG +   DRI E+  + +       + +   + P G++  P   +L GI D 
Sbjct: 5   YVLLDLETTGSNPVLDRITEVAVMRVEQGEVVAK-WSRLVNP-GQRIPPFIQQLTGIDDA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
            +   P+F  +  E     +   A  +AHN +FD GF+  
Sbjct: 63  MVAGAPAFGEVLPELLAALDG--AVLVAHNVRFDHGFLKQ 100


>gi|288800251|ref|ZP_06405709.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332464|gb|EFC70944.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 896

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 55/181 (30%), Gaps = 9/181 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFL---CP-----NGRKNSPEAL 60
           +VFD ETTGL+   D I++I AV++       N  F++F+    P        +N     
Sbjct: 515 VVFDTETTGLNVLEDDIVQIAAVKIAKGKVLENERFEIFIDTKRPIPAMLGDIENPLIEE 574

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                     +    F           +    ++                 + +   +D 
Sbjct: 575 IKKHTLHTPAEALARFMEYIDGAMLVGHNATYDYQILYNNLLRYLPQYTFLQKHSSYIDT 634

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++   L  + + +           +     ++    H  +   H      ++ + G S+
Sbjct: 635 LKLTRLLQPSLKNYKLKNLLQEFQLEGQNTHLADADVHATVGLVHFCYQQSVEKLKGQSE 694

Query: 181 I 181
            
Sbjct: 695 F 695


>gi|227519479|ref|ZP_03949528.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX0104]
 gi|257084298|ref|ZP_05578659.1| exonuclease [Enterococcus faecalis Fly1]
 gi|257416905|ref|ZP_05593899.1| exonuclease [Enterococcus faecalis AR01/DG]
 gi|257421652|ref|ZP_05598642.1| exonuclease [Enterococcus faecalis X98]
 gi|307288644|ref|ZP_07568625.1| exonuclease [Enterococcus faecalis TX0109]
 gi|227073091|gb|EEI11054.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX0104]
 gi|256992328|gb|EEU79630.1| exonuclease [Enterococcus faecalis Fly1]
 gi|257158733|gb|EEU88693.1| exonuclease [Enterococcus faecalis ARO1/DG]
 gi|257163476|gb|EEU93436.1| exonuclease [Enterococcus faecalis X98]
 gi|306500398|gb|EFM69734.1| exonuclease [Enterococcus faecalis TX0109]
 gi|315155598|gb|EFT99614.1| exonuclease [Enterococcus faecalis TX0043]
 gi|315165305|gb|EFU09322.1| exonuclease [Enterococcus faecalis TX1302]
          Length = 188

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 7/167 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M    FD ET            I  V++ +    +  F   + P          ++HGI 
Sbjct: 12  MNFYAFDFET--ASYDKHSACSIAIVKVENSRIVDE-FYTLIKPETPFF-WRNTQIHGIH 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + + P F     +      + N   +AHNA FD   +   L     +  +   +   
Sbjct: 68  ESDVANAPKF-PEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 126

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +  +       + LN++C+   IT    + H AL DS   +++ ++
Sbjct: 127 KTSRKLFPEFPNHKLNTVCENLNIT--LNNHHDALEDSRACAEILLQ 171


>gi|224825206|ref|ZP_03698312.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224602877|gb|EEG09054.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 212

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 8/203 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTGL      R  EI  V L +     R FQ  +   G +  P+  +L GI+
Sbjct: 12  RVAVIDFETTGLSPGIGCRATEIAVVLLENGRVAGR-FQSLMN-AGVRVPPDIERLTGIS 69

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  LK  P   ++  E  +F  +     +AHNA FD  F + EL +  +           
Sbjct: 70  NAMLKAAPPADAVMREAAEFVGD--TPLVAHNAAFDRKFWDYELGQFGRTRRQDFACTLL 127

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS-QINFGF 185
           L+       +  + L +L +  G+  + ++           + +   +      Q     
Sbjct: 128 LARRLLPA-APNHKLGTLTRWAGLPATGQAHRALADAEMAAN-LMAHLTRVLRVQHGLDR 185

Query: 186 KTNEDRFFKEEKKTVPNISLLKR 208
            +++     ++         L+R
Sbjct: 186 VSHQLLCGLQKVAAKQVPEYLRR 208


>gi|218670823|ref|ZP_03520494.1| DNA polymerase III subunit epsilon [Rhizobium etli GR56]
          Length = 164

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEAL 60
           ++ D ETTGL+ +ND IIEIGAV     D         ++  L    R   PE  
Sbjct: 65  VILDTETTGLNHRNDEIIEIGAVAFTFDDDRAIGDIVGIYGGLQQPSRPIPPEIT 119


>gi|295106393|emb|CBL03936.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 1031

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 4/113 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +V D ETTG    +D + +I A  +         F  F+ P G+    +   L  I D
Sbjct: 46  NIVVVDTETTGFSFNHDELTQIAAARMEQGRIV-DWFITFVNP-GKPIPEDVAYLTDIHD 103

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           E + D P  S   SE  +F  +  A+ +AHNA+FD  F               
Sbjct: 104 EDVADAPLPSEALSELAEFVGD--AKIVAHNAEFDRTFTTRHPSGYPLLENTW 154


>gi|219669053|ref|YP_002459488.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium
           hafniense DCB-2]
 gi|219539313|gb|ACL21052.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium
           hafniense DCB-2]
          Length = 929

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 12/185 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI+      +V DIETTG D  ND IIE  A+ + +  +    F V + P  R+     L
Sbjct: 1   MIKGK---IVVIDIETTGFDIYNDEIIEFAALCIEEGEE-AEAFSVLISP-RRQVPERIL 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GI+ E LK   S  +   +  D F +  A  + HN +FD+GF+   L    ++ L  
Sbjct: 56  RLTGISPEELKQAGSLQAYRDKILDLFQD--AIIVGHNVEFDLGFLEQALTIHFENTLWD 113

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  I             +  L  L K  G+T   ++ H AL D+    ++       G  
Sbjct: 114 TLEIA----RILYPNMPKYKLGDLTKSLGLTPLEKA-HRALFDARAAWELLQACWEKGLT 168

Query: 181 INFGF 185
           ++ GF
Sbjct: 169 LDLGF 173


>gi|255037648|ref|YP_003088269.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
           18053]
 gi|254950404|gb|ACT95104.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
           18053]
          Length = 269

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 8/162 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG++   DRI+EI  V+ L++     RT    + P       E+  +HGI DE 
Sbjct: 12  FFDLETTGVNIVRDRIVEISVVKALVNGETEIRT--RRINPE-MPIPLESSLIHGIYDED 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P+F S+      F    +      N       +   L+      +   R++D   I
Sbjct: 69  VKDAPTFKSVAKNLASFLEGCDLAGFNSNRFDIPMLVEEFLRVGVDFDVKNRRMVDVQRI 128

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                P       S   ++    +  + H A  D+    +V 
Sbjct: 129 YHMMEP----RNLSAAYKFYCGKTLNNAHSAEADTIATFEVL 166


>gi|322374172|ref|ZP_08048705.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C150]
 gi|321276877|gb|EFX53949.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C150]
          Length = 1464

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 68/193 (35%), Gaps = 6/193 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +     F  F+ P        A         
Sbjct: 426 YVVFDVETTGLSAVHNDLIQIAASKMHKGNII-EQFDEFIDPG---YPLSAFTTELTGIT 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               K +   +          Q    +AHNA FDVGF+NA  +R     +    I     
Sbjct: 482 DNHVKGAKPLLQVLQEFQVFCQGTVLVAHNATFDVGFMNANYERNQLPTISQPVIDTLEF 541

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                    R+ L  L KR+G+     H + + A     LL      +       N    
Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALDHHHMANYDAEATGRLLFIFIKDVFDKHGLTNLEQL 601

Query: 187 TNEDRFFKEEKKT 199
             E       KK+
Sbjct: 602 NTELVSEDSYKKS 614


>gi|256818856|ref|YP_003140135.1| Exonuclease RNase T and DNA polymerase III [Capnocytophaga ochracea
           DSM 7271]
 gi|256580439|gb|ACU91574.1| Exonuclease RNase T and DNA polymerase III [Capnocytophaga ochracea
           DSM 7271]
          Length = 258

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 75/222 (33%), Gaps = 19/222 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG+D   DRI+EI  +++  + +K ++T+   + P        A  +HGITDE 
Sbjct: 11  FFDLETTGIDITKDRIVEISILKVYPNGNKESKTW--LVNP-TIPIPKAASDVHGITDER 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +P+F  +  +  +   + +      +           L+      L     +D  +I
Sbjct: 68  VAGEPTFKELAKQIHNMIKDSDLAGYNSDRFDIPLLAEEMLRAEVDFDLGNRVSVDVQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          S   ++         H A  D++   ++    +     +    K   
Sbjct: 128 FHK----MEQRTLSAAYKFYCGKDLIDAHTASADTNATYEILKAQLDRYDNLENNIKKLS 183

Query: 190 D-----------RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           +            F     K     +  K        I  EE
Sbjct: 184 EFTYRKQIADFAGFIGYNDKGEEIFTFGKHKGKRVEDIFDEE 225


>gi|139439869|ref|ZP_01773234.1| Hypothetical protein COLAER_02268 [Collinsella aerofaciens ATCC
           25986]
 gi|133774797|gb|EBA38617.1| Hypothetical protein COLAER_02268 [Collinsella aerofaciens ATCC
           25986]
          Length = 964

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 68/178 (38%), Gaps = 10/178 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D ETTGL  +++ +IEI A  L      +R F  F+ P  +    E  +L  IT+  
Sbjct: 39  IVLDTETTGLSVQDNELIEISAARLSGREVVDR-FDTFVHPK-QLIPAEITELTSITNAD 96

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D PS     +   DF        IAHNA FD  FI +    +N   +    +  +   
Sbjct: 97  VADAPSAVEAVAALADFVGG--CPVIAHNATFDRSFIESVKGGVNVSDIWIDSLALSRIA 154

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
             R      + +  L             H A  D   L  V+  ++V  + +  G   
Sbjct: 155 LPRLASHKLSFMADL------FGCDSVSHRANADVDALCGVWRVLLVALTDLPQGLMA 206


>gi|307717346|gb|ADN88726.1| DNA polymerase III [Listeria innocua]
 gi|307717356|gb|ADN88731.1| DNA polymerase III [Listeria innocua]
 gi|307717358|gb|ADN88732.1| DNA polymerase III [Listeria innocua]
 gi|307717360|gb|ADN88733.1| DNA polymerase III [Listeria innocua]
 gi|307717374|gb|ADN88740.1| DNA polymerase III [Listeria innocua]
 gi|307717388|gb|ADN88747.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 6/194 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +  +F +     +   +AHNA FD+GFIN   +++  +    + +         
Sbjct: 59  SDPIDVVLKQFRE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAKNAVVDTLELARFL 116

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
                 + LN+L K++   I     H A+ D+   + +  K++    +++     +    
Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIEFHDSLND 174

Query: 193 FKEEKKTVPNISLL 206
           +  E          
Sbjct: 175 YMGEGDAYKRARPF 188


>gi|238782582|ref|ZP_04626613.1| Ribonuclease T [Yersinia bercovieri ATCC 43970]
 gi|238796368|ref|ZP_04639877.1| Ribonuclease T [Yersinia mollaretii ATCC 43969]
 gi|238716509|gb|EEQ08490.1| Ribonuclease T [Yersinia bercovieri ATCC 43970]
 gi|238719813|gb|EEQ11620.1| Ribonuclease T [Yersinia mollaretii ATCC 43969]
          Length = 226

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAQTDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +         A  +AHNA FD  F+ A  +R +  
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGLKDQGCNRAIIVAHNANFDHSFVMAAAERASLK 150

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D+   + ++ +++ 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCELVN 210

Query: 177 GGSQIN 182
              ++ 
Sbjct: 211 RWKKLG 216


>gi|332202187|gb|EGJ16256.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA41317]
          Length = 1463

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 7/211 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185
                    R+ L  L KR+G+     H + + A     LL     ++       +    
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLDRL 600

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +       +K  + + ++  +++     I
Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631


>gi|260060780|ref|YP_003193860.1| DNA polymerase III subunit alpha [Robiginitalea biformata HTCC2501]
 gi|88784910|gb|EAR16079.1| DNA polymerase III, alpha subunit [Robiginitalea biformata
           HTCC2501]
          Length = 1453

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 19/228 (8%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R I+I         +    +   + P+G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPASDTDNWPRCIQIAWQLHDGEGRLVEQYDALVRPDGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A ++HGI+ +  +++        E +     +    +  N  FD+  + AE  R+  +  
Sbjct: 62  AEQIHGISTDLAREEGLPLEEVLEAFRGALSRTQFLVGQNVGFDINVMGAEFYRVADEDP 121

Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                +                           +    +         H A  D    + 
Sbjct: 122 LEKFPVLDTCTESTAELCQLPGGRGGKFKLPTLTELHLHLFGEPFEEAHNATADVEATAR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
            +++++                F   ++     I+ +        + +
Sbjct: 182 CFLELLRRRQYSPEQLGVAPGYFEAFDRANPGTIAPIGIAHKNLKKAS 229


>gi|149020300|ref|ZP_01835192.1| hypothetical protein CGSSp23BS72_05994 [Streptococcus pneumoniae
           SP23-BS72]
 gi|147930602|gb|EDK81584.1| hypothetical protein CGSSp23BS72_05994 [Streptococcus pneumoniae
           SP23-BS72]
          Length = 308

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 9/175 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D+ET   +S    +  IG V+ +D  +   +F   + P   K S   +K+H I  E
Sbjct: 5   FIALDVET--ANSFRGSLCSIGLVKFIDGQEV-DSFYTLINPE-EKFSSRNIKIHAIKPE 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+F  +  E  +F    N   +AHNA+FD   +     +      +         
Sbjct: 61  DVIGAPTFPEVQKEIINFI--DNLPIVAHNARFDAYALQDVYLKYEIPFDNIQYFCSYQV 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     + L++L + +         H AL D+     + ++++    Q + 
Sbjct: 119 CKIILTDLPNHKLHTLAEHF---KISLDHHNALSDARACGLILLEILKLSKQTSI 170


>gi|325912570|ref|ZP_08174953.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
 gi|325477991|gb|EGC81120.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
          Length = 241

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    ++DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +            N              ++         ++  
Sbjct: 69  QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175
            IA    PS +    +          HR+   AL+ + +L  +   I+M+
Sbjct: 129 QIAFPTIPSYKLQDITSTLHIKHANPHRADSDALVTAKMLLKIIDKIEML 178


>gi|219849043|ref|YP_002463476.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM
          9485]
 gi|219543302|gb|ACL25040.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM
          9485]
          Length = 934

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+ETTGL S  D IIE+ AV        +R F+  + P  +    +  +L GI   
Sbjct: 6  YVAIDVETTGLQSGLDEIIEVAAVTFRGRDILDR-FERLVRP-RQSVPLKITRLTGIDPA 63

Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE 93
           L   P F+ I ++   F   +   
Sbjct: 64 ALAQAPRFNEIGADLARFIGNRPIV 88


>gi|309805626|ref|ZP_07699668.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165064|gb|EFO67305.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
          Length = 225

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 72/217 (33%), Gaps = 10/217 (4%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    ++DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +            N              ++         ++  
Sbjct: 69  QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKM-----MVGGSQ 180
            IA    PS +    +          HR+   AL+ + +L  +   I+M     +   + 
Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIEKIEMLPTATLNSLTS 188

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
           ++ G   N    F +             +  +  +I+
Sbjct: 189 MSRGLLRNTYYIFSQVSTYARQEKRPLNNDLIQIKIS 225


>gi|302773125|ref|XP_002969980.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii]
 gi|300162491|gb|EFJ29104.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii]
          Length = 1208

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   KM  IVFD+ETTG  +  DRIIE  A +L    ++  T    + P GR        
Sbjct: 170 IPAPKMTIIVFDLETTGFRAAGDRIIEFAARDLAGGDRS--TISALVNP-GRTVPYLITA 226

Query: 62  LHGITDEFLKDKP 74
           + GIT++ +    
Sbjct: 227 VTGITNQMVNKPH 239


>gi|302799380|ref|XP_002981449.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii]
 gi|300150989|gb|EFJ17637.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii]
          Length = 1254

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   KM  IVFD+ETTG  +  DRIIE  A +L    ++  T    + P GR        
Sbjct: 170 IPAPKMTIIVFDLETTGFRAAGDRIIEFAARDLAGGDRS--TISALVNP-GRTVPYLITA 226

Query: 62  LHGITDEFLKDKP 74
           + GIT++ +    
Sbjct: 227 VTGITNQMVNKPH 239


>gi|15829146|ref|NP_326506.1| DNA polymerase III PolC [Mycoplasma pulmonis UAB CTIP]
 gi|14424449|sp|P47729|DPO3_MYCPU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14090090|emb|CAC13848.1| DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII) [Mycoplasma
           pulmonis]
          Length = 1435

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 4/188 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V+DIETTGL    + +I+ GA  + +      T   F+ P  + +S            
Sbjct: 404 YVVYDIETTGLSPMLNELIQFGASVIKNGRII-ETHHFFIKPKSKLDS---FTTKLTGIT 459

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               +  +    +        +    +AHNA FD  F+  +    N +  +   I     
Sbjct: 460 QEHLEKGYELQEALEKISSIFKARIMVAHNAAFDHNFLKQKFIDNNIEFEEMISIDTLNL 519

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L  +  +  +       H A  DS +L++++I  M    +        
Sbjct: 520 AKVLNPIYRSYRLGEVASKLSVVYDPSIAHRADYDSSVLTNIFILQMSHLKEKGINLFKE 579

Query: 189 EDRFFKEE 196
            +    E+
Sbjct: 580 LNSLSSEK 587


>gi|487436|gb|AAA18178.1| DNA polymerase III [Mycoplasma pulmonis]
 gi|1090178|prf||2018296A DNA polymerase III
          Length = 1435

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 4/188 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V+DIETTGL    + +I+ GA  + +      T   F+ P  + +S            
Sbjct: 404 YVVYDIETTGLSPMLNELIQFGASVIKNGRII-ETHHFFIKPKSKLDS---FTTKLTGIT 459

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               +  +    +        +    +AHNA FD  F+  +    N +  +   I     
Sbjct: 460 QEHLEKGYELQEALEKISSIFKARIMVAHNAAFDHNFLKQKFIDNNIEFEEMISIDTLNL 519

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L  +  +  +       H A  DS +L++++I  M    +        
Sbjct: 520 AKVLNPIYRSYRLGEVASKLSVVYDPSIAHRADYDSSVLTNIFILQMSHLKEKGINLFKE 579

Query: 189 EDRFFKEE 196
            +    E+
Sbjct: 580 LNSLSSEK 587


>gi|312978151|ref|ZP_07789895.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus crispatus CTV-05]
 gi|310894869|gb|EFQ43939.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus crispatus CTV-05]
          Length = 926

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 7/169 (4%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   +    II+ G   + +     +T+   + P+ R+     + L GI D
Sbjct: 10  FAVVDLETTGTQRENGHHIIQFGCAIIKNRKVV-KTYSFLINPH-REIPQSVVNLTGIHD 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +  F     +       QN  ++AHN  FD+ F+N EL +   + L    I    
Sbjct: 68  QDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEALTNKAIDTVE 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKM 174
                        L+ L  + GI     H++   A   + LL +++ K+
Sbjct: 126 LAKIAFPTFPSYKLSDLTTQLGIKHLDPHKADSDAYGTAVLLLEIFNKL 174


>gi|148986116|ref|ZP_01819102.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP3-BS71]
 gi|149004079|ref|ZP_01828884.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69]
 gi|147757891|gb|EDK64900.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69]
 gi|147921830|gb|EDK72957.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP3-BS71]
 gi|301799167|emb|CBW31680.1| unnamed protein product [Streptococcus pneumoniae OXC141]
          Length = 307

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 73/215 (33%), Gaps = 6/215 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ET   +     +  IG V+  D +    TF   + P   +     + +HGIT E
Sbjct: 5   YVALDVET--ANDFRGSVCSIGLVKFKDGNIV-DTFYTLINPE-EEFDDFNIFIHGITPE 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +     DF        +AH A+FD+G +    Q+   D  +   I     
Sbjct: 61  DVLDSPTFPEVRKSIVDFIGL--DIVVAHFAQFDMGALKDVYQKYELDFDNIEYICSYRL 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L  L K   I + H +       S L+ +  +          F  +  
Sbjct: 119 AKVALPGQLNYKLKRLAKNLNIELDHHNALSDARASGLILEYLLSTNSFSDLTAFLKEYR 178

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
            ++     +         +  + L  + T+EE   
Sbjct: 179 YNKTGLLGQYGFKRKKGYQYKENLIYQPTEEEKAA 213


>gi|325686582|gb|EGD28608.1| DNA polymerase III PolC [Streptococcus sanguinis SK72]
          Length = 1462

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 84/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +++      +  EF +F  +  +  +AHNA FDVGF+N   +R N   +       ++ 
Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHNLPKITQPVIDTLEF 539

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
                 ++        +   +  +   H + + A     LL      +       N    
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T+       +K  V + ++  +++
Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624


>gi|320539160|ref|ZP_08038831.1| ribonuclease T (RNase T) [Serratia symbiotica str. Tucson]
 gi|320030798|gb|EFW12806.1| ribonuclease T (RNase T) [Serratia symbiotica str. Tucson]
          Length = 248

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV  ++ +    + + T    + P  G    PEAL  +G
Sbjct: 52  VVIDVETAGFNAKTDALLEIAAVTLKMDEGGWLQQDETLHFHVEPFEGANLQPEALAFNG 111

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +                A  +AHNA FD  F+ A  +R +  
Sbjct: 112 IDPHNPLRGAVSEYDALHAIFKTVRAGIKHRGCNRAIIVAHNANFDHSFLMAAAERASLK 171

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   G+       H AL D+   + ++ +++ 
Sbjct: 172 RNPFHPFATFDTAALSGLVLGQTVLAKACTAAGMPFDSSQAHSALYDTEQTALLFCELVN 231

Query: 177 GGSQIN 182
              ++ 
Sbjct: 232 RWKRLG 237


>gi|262194253|ref|YP_003265462.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077600|gb|ACY13569.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 4/117 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNG-RKNSPEALKLHGITD 67
           +  D ETTGLD +   I+EI A+ +   + +  RT  + + P       PEAL+++G   
Sbjct: 5   VFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERTLVLRVRPERLEDADPEALEVNGYHQ 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
               D  S     +E         A    HN  FD  F+ A    +   P +     
Sbjct: 65  RVWVDAVSLDEALAELAPMLEG--AVLAGHNVAFDRRFLEAAWDYVGHRPENLDHHA 119


>gi|209519136|ref|ZP_03267941.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
 gi|209500436|gb|EEA00487.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
          Length = 382

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 7/103 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+ETTG  +   RI E+G VE+     T  T +   + P  +       +L GIT++
Sbjct: 16  VFVDLETTGGSTSEHRITEVGVVEV---GPTGVTRWSSLIDPQ-QPIPSFIQQLTGITND 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            +   P+F SI    ++  N     ++AHNA FD GF+ +E +
Sbjct: 72  MVHGAPTFESIAPALYERLNG--KLFVAHNASFDRGFLRSEFR 112


>gi|160874893|ref|YP_001554209.1| ribonuclease T [Shewanella baltica OS195]
 gi|160860415|gb|ABX48949.1| ribonuclease T [Shewanella baltica OS195]
 gi|315267130|gb|ADT93983.1| ribonuclease T [Shewanella baltica OS678]
          Length = 223

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSKTN--RTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S+ D ++EI    +++ +       +T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNSQTDALLEIAVTLLKMDNEGVIGIDKTLHFHIEPFEGANLEPEALAFNG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +     +   +  +AHNA FD GF++  ++R +  
Sbjct: 80  IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L   C   GI   ++  H AL D+   ++++  ++ 
Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCHIVN 199

Query: 177 GGSQIN 182
               + 
Sbjct: 200 RWKSLG 205


>gi|153000260|ref|YP_001365941.1| ribonuclease T [Shewanella baltica OS185]
 gi|304409837|ref|ZP_07391457.1| ribonuclease T [Shewanella baltica OS183]
 gi|307304193|ref|ZP_07583946.1| ribonuclease T [Shewanella baltica BA175]
 gi|166200019|sp|A6WM39|RNT_SHEB8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|151364878|gb|ABS07878.1| ribonuclease T [Shewanella baltica OS185]
 gi|304352355|gb|EFM16753.1| ribonuclease T [Shewanella baltica OS183]
 gi|306913091|gb|EFN43514.1| ribonuclease T [Shewanella baltica BA175]
          Length = 223

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSKTN--RTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S+ D ++EI    +++ +       +T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNSQTDALLEIAVTLLKMDNEGVIGIDKTLHFHIEPFEGANLEPEALAFNG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +     +   +  +AHNA FD GF++  ++R +  
Sbjct: 80  IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L   C   GI   ++  H AL D+   ++++  ++ 
Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCHIVN 199

Query: 177 GGSQIN 182
               + 
Sbjct: 200 RWKSLG 205


>gi|126173968|ref|YP_001050117.1| ribonuclease T [Shewanella baltica OS155]
 gi|217973711|ref|YP_002358462.1| ribonuclease T [Shewanella baltica OS223]
 gi|166200018|sp|A3D3D5|RNT_SHEB5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|125997173|gb|ABN61248.1| RNAse T [Shewanella baltica OS155]
 gi|217498846|gb|ACK47039.1| ribonuclease T [Shewanella baltica OS223]
          Length = 223

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSKTN--RTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S+ D ++EI    +++ +       +T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNSQTDALLEIAVTLLKMDNEGVIGIDKTLHFHIEPFEGANLEPEALAFNG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +     +   +  +AHNA FD GF++  ++R +  
Sbjct: 80  IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L   C   GI   ++  H AL D+   ++++  ++ 
Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCHIVN 199

Query: 177 GGSQIN 182
               + 
Sbjct: 200 RWKSLG 205


>gi|149371249|ref|ZP_01890735.1| DNA Pol III Epsilon Chain [unidentified eubacterium SCB49]
 gi|149355387|gb|EDM43946.1| DNA Pol III Epsilon Chain [unidentified eubacterium SCB49]
          Length = 257

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ETTG++   DRI+EI  +++        +F   + P           +HGITDE +
Sbjct: 11  FFDLETTGINIAKDRIVEIAILKVFPNGN-KESFVWKVNP-TIPIPKVTSDIHGITDEMV 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK 100
            ++P+F  +  + +    + +      N  
Sbjct: 69  VNEPTFKELAPKVFALIKDSDLAGFNSNRF 98


>gi|315634736|ref|ZP_07890020.1| ribonuclease T [Aggregatibacter segnis ATCC 33393]
 gi|315476684|gb|EFU67432.1| ribonuclease T [Aggregatibacter segnis ATCC 33393]
          Length = 217

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 72/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET GL++K D ++E+ A+ L          ++     + P  G    PE++K +G
Sbjct: 23  VVIDVETAGLNAKTDALLELAAITLKMDDAGNLVPDQKCHFHIHPFEGANIDPESIKFNG 82

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                  +  +     + Q +  +AHNA FD GF+ A  QR+N  
Sbjct: 83  IDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNASFDHGFVMAAAQRMNAK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    +  H AL D+   ++++  M+ 
Sbjct: 143 RNPFHPFSTFDTATLSGFMFGQTVLVKACQAAKIPFDSQQAHSALYDTERTAELFCYMVN 202

Query: 177 GGSQIN 182
               + 
Sbjct: 203 HLKHLG 208


>gi|260063099|ref|YP_003196179.1| hypothetical protein RB2501_15959 [Robiginitalea biformata
           HTCC2501]
 gi|88784668|gb|EAR15838.1| hypothetical protein RB2501_15959 [Robiginitalea biformata
           HTCC2501]
          Length = 375

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 7/169 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V DIETTG     + I EI       +     TF   + P  R   P   KL GI 
Sbjct: 1   MTYAVLDIETTGGKFDEEGITEIAIHRFDGHEVV-DTFISLINPE-RPIQPYVQKLTGID 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + ++  P F  +     +    +++  +AHNA+FD   +  E +R+  +    +     
Sbjct: 59  PKMVQTAPRFHQVAKRIVE--ITRDSVLVAHNAQFDYRILRTEFRRLGYNFERKTLCTVD 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           LS             +       + I   ++H A  D+     +   ++
Sbjct: 117 LSQRLI---PDAESHSLGKLVRSLGIPVSNRHRANGDALATLKLLQHLL 162


>gi|309803980|ref|ZP_07698062.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus iners
           LactinV 11V1-d]
 gi|308163899|gb|EFO66164.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus iners
           LactinV 11V1-d]
          Length = 933

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    ++DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +            N              ++         ++  
Sbjct: 69  QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFDGKAIDTVELA 128

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175
            IA    PS +    +          HR+   AL+ + +L  +   I+M+
Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIDKIEML 178


>gi|149183101|ref|ZP_01861552.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. SG-1]
 gi|148849178|gb|EDL63377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. SG-1]
          Length = 933

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 5/101 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + +V D+ETTG    K D+II++ A+ +   +    ++  F+ P G        +L GI 
Sbjct: 5   KIVVVDLETTGNSPKKGDKIIQLAAMVVQGGAVV-DSYTTFVNP-GITIPSFIEELTGIH 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           D  +KD P FS I  +  +  +   A + AHN +FD+GF+ 
Sbjct: 63  DGMVKDAPEFSEIAPKVLELLDG--AVFCAHNVQFDLGFLQ 101


>gi|146292700|ref|YP_001183124.1| ribonuclease T [Shewanella putrefaciens CN-32]
 gi|166200020|sp|A4Y5U2|RNT_SHEPC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|145564390|gb|ABP75325.1| RNAse T [Shewanella putrefaciens CN-32]
          Length = 224

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S+ D ++EI    +++ D      ++T    + P  G    P AL  +G
Sbjct: 20  VVIDVETAGFNSQTDALLEIAVTLLKMDDEGMLGIDKTLHFHIEPFEGANLEPAALAFNG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +     +      +AHNA FD GF++  ++R +  
Sbjct: 80  IDPNNPLRGAVSEKEAFLDIFKAVKKAQKAADCHRCIIVAHNAAFDHGFVSKAIERCDLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L   C   GI   ++  H AL D+   ++++  ++ 
Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACMMAGIPFDNKEAHSALYDTERTAELFCYIVN 199

Query: 177 GGSQIN 182
              Q+ 
Sbjct: 200 RWKQLG 205


>gi|258648468|ref|ZP_05735937.1| exonuclease [Prevotella tannerae ATCC 51259]
 gi|260851225|gb|EEX71094.1| exonuclease [Prevotella tannerae ATCC 51259]
          Length = 256

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 73/182 (40%), Gaps = 9/182 (4%)

Query: 1   MIRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPE 58
           M + N  R I+F DIE TGL    DRI+E+  +++  D  + ++T +    P     S E
Sbjct: 1   MTQLNLTRPIIFFDIEATGLQIARDRIVELSYIKVFPDGREESKTLRF--NPEMH-ISAE 57

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A  ++GI DE + D P+F     E    F   +      N       +    +  +   +
Sbjct: 58  ATAVNGIKDEDVADCPTFKEKSGELTAIFQSCDLAGFNSNVFDVPMLVEEFARAGSDFDI 117

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             S+++D  +I  +  P +         ++       + H A+ D+    +V    +   
Sbjct: 118 TKSKLVDVQTIYHKLEPRNLIA----AYKFYCNKDLHNAHTAMADTQATYEVLKAQLDKY 173

Query: 179 SQ 180
            +
Sbjct: 174 GK 175


>gi|257090922|ref|ZP_05585283.1| exonuclease [Enterococcus faecalis CH188]
 gi|312902561|ref|ZP_07761767.1| exonuclease [Enterococcus faecalis TX0635]
 gi|256999734|gb|EEU86254.1| exonuclease [Enterococcus faecalis CH188]
 gi|310634231|gb|EFQ17514.1| exonuclease [Enterococcus faecalis TX0635]
 gi|315168719|gb|EFU12736.1| exonuclease [Enterococcus faecalis TX1341]
 gi|315579629|gb|EFU91820.1| exonuclease [Enterococcus faecalis TX0630]
          Length = 188

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 7/167 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M    FD ET            I  V++ +    +  F   + P          ++HGI 
Sbjct: 12  MNFYAFDFET--ASYDKHSACSIAIVKVENSQIVDE-FYTLIKPETPFF-WRNTQIHGIH 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + + P F     +      + N   +AHNA FD   +   L     +  +   +   
Sbjct: 68  ESDVVNAPKF-PEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 126

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +  +       + LN++C+   IT    + H AL DS   +++ ++
Sbjct: 127 KTSRKLFPEFPNHKLNTVCENLNIT--LNNHHDALEDSRACAEILLQ 171


>gi|157736764|ref|YP_001489447.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|315635941|ref|ZP_07891202.1| exonuclease [Arcobacter butzleri JV22]
 gi|157698618|gb|ABV66778.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|315479725|gb|EFU70397.1| exonuclease [Arcobacter butzleri JV22]
          Length = 203

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 7/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+ K D I+ IGAV +  +     +TF +FL P  +  + E++K+H +  
Sbjct: 31  YVSLDCETTGLNPKKDEILSIGAVLIKDNKILMRKTFNIFLKP-SKDINIESIKVHHLRQ 89

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L D         +  DF        + +  +FD+  I+   ++     L  + I  + 
Sbjct: 90  IDLNDALEPEIGIYQLLDFIGS--RPIVGYYIEFDMAIISKYTKKYLGIKLPNTPIEVSS 147

Query: 128 SIARRKHPSSRNDLNSL---CKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                +  +S      L        + I    KH AL D+ + S +++K+    +Q
Sbjct: 148 IYYDSRKSTSNYGFIDLKFDTIMKNLNIPVLGKHDALNDAIMTSMIFLKLKQFINQ 203


>gi|209546045|ref|YP_002277935.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538902|gb|ACI58835.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 326

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 63/187 (33%), Gaps = 15/187 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+ ++D IIEIGAV     D         ++  L    R    E  +L GI
Sbjct: 75  VILDTETTGLNHRSDEIIEIGAVAFTFDDDGGIGDIVGIYGGLQQPSRPIPAEITRLTGI 134

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD  ++ +     I         E     IAHNA FD  F  A                 
Sbjct: 135 TDAMVEGQ----VIDMWSLSALIEPADLIIAHNAGFDRPFCEAFSTIFAGKAW------- 183

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             S++     +   +   L    G        H A+ D H L ++  +    G       
Sbjct: 184 ACSVSEIDWSARGFEGTKLGYLVGQAGYFHDGHRAVDDCHALLEILDREQGDGESPFAEL 243

Query: 186 KTNEDRF 192
                R 
Sbjct: 244 YRASQRS 250


>gi|168490120|ref|ZP_02714319.1| exonuclease family protein [Streptococcus pneumoniae SP195]
 gi|183571500|gb|EDT92028.1| exonuclease family protein [Streptococcus pneumoniae SP195]
          Length = 307

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 74/215 (34%), Gaps = 6/215 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ET   +     +  IG V+  D +    +F   + P   +     + +HGIT E
Sbjct: 5   YVALDVET--ANDFRGSVCSIGLVKFKDGNIV-DSFYTLINPE-EEFDDFNIFIHGITPE 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +     DF        +AH A+FD+G +    Q+   D  +   I     
Sbjct: 61  DVLDSPTFPEVRKAIVDFIGS--DIVVAHFAQFDMGALKDVYQKYELDFDNIEYICSYRL 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L  L K   I + H +       S L+ +  +          F  + +
Sbjct: 119 AKVALPGQLNYKLKRLAKNLNIELDHHNALSDARASGLILEYLLSTNSFSDLNAFLKEYS 178

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
            ++     +         +  + L  + T+EE   
Sbjct: 179 YNKTGLLGQYGFKRKKSYQYKENLIYQPTEEEKAA 213


>gi|212551002|ref|YP_002309319.1| DNA polymerase III epsilon subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549240|dbj|BAG83908.1| DNA polymerase III epsilon subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 258

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 82/215 (38%), Gaps = 11/215 (5%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           ++ N  R IVF D+ETTG +  +DRI+EI  ++++ +  K  +T    + P       EA
Sbjct: 1   MKLNLKRPIVFFDLETTGTNIISDRIVEISYLKVMPNDEKEIKT--RRINPE-IPIPKEA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGIT+E +K+   F +I           +      N           L+        
Sbjct: 58  SDIHGITNEDVKNALPFKAIAKLLASQIEGCDLAGYNSNRFDIPILAEEFLRAGIDVDWT 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             + +D  +I  +K P +         ++       + H A  D+    +V    +    
Sbjct: 118 KQKFVDVQTIFHKKEPRTLLA----ALKFYCNRDLENAHSAAEDAKATYEVLKAQLDKYP 173

Query: 180 --QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
             Q +  F +N   F K+       I   ++ + L
Sbjct: 174 DLQNDIIFLSNYSSFNKKNVDFAGRIVYNEKKQEL 208


>gi|167462368|ref|ZP_02327457.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
          subsp. larvae BRL-230010]
          Length = 203

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 7  MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
          MR+I  VFD+ETTGLD   D+I EI A+      +  R
Sbjct: 1  MREIYTVFDLETTGLDPTKDQITEIAAIRTDLIREYGR 38


>gi|256847331|ref|ZP_05552777.1| helicase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715995|gb|EEU30970.1| helicase [Lactobacillus coleohominis 101-4-CHN]
          Length = 950

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 61/207 (29%), Gaps = 4/207 (1%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG   K  DRII++G V + D       F+  + P   K      +L GITD+ 
Sbjct: 18  VVDLETTGTSVKSGDRIIQVGLVMIQDGKII-NQFETRINP-LMKIPRSVQQLTGITDKD 75

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P    I        +         N  F            +   +     +    I
Sbjct: 76  VSKAPLLEDIAPTLESLLSGTIFVAHNVNFDFPFINHELTRVGRDPLRISAIDTVTLSQI 135

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
                 S R    +          H +   A     LL D+ +  +     +        
Sbjct: 136 LMPTAKSYRLRDLTSYLHIEHDHPHSAVSDAEATGVLLKDL-LAKLRALPTVTLQTLVKM 194

Query: 190 DRFFKEEKKTVPNISLLKRDKPLFTRI 216
           +     +   +    L +R++      
Sbjct: 195 EMQLPFQTANLFQRELDERNQHPLPLA 221


>gi|186475443|ref|YP_001856913.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815]
 gi|184191902|gb|ACC69867.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815]
          Length = 392

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG    + RI E+G VE+     +  ++   + P G+   P   +L GIT++ 
Sbjct: 16  VFVDLETTGGSVGDHRITEVGVVEVGPNGVS--SWTTLVDP-GQPIPPFIQQLTGITNDM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F +I ++ +   +     +IAHNA FD GF+    +           ++ T+ +
Sbjct: 73  VRGAPTFEAIAADLFARLDG--KLFIAHNASFDRGFLR--SEFQRAGFAFNPDVLCTVRL 128

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P+ +                  +H AL D+ LL   + ++
Sbjct: 129 SRALFPAEKRHGLDALVERHAL-MPSDRHRALADADLLWQFWQRL 172


>gi|146311450|ref|YP_001176524.1| ribonuclease T [Enterobacter sp. 638]
 gi|166991090|sp|A4W9U3|RNT_ENT38 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|145318326|gb|ABP60473.1| RNAse T [Enterobacter sp. 638]
          Length = 224

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L        T + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLTPDTTLHFHVDPFEGANLQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +   +  +     N   A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPHNPLRGAVSEYDALHAIYKMVRKGMKDSNCNRAIMVAHNATFDHSFMMAASERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   GI       H AL D+   ++++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACITAGIDFDGNQAHSALYDTERTAELFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|251777997|ref|ZP_04820917.1| putative exonuclease [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082312|gb|EES48202.1| putative exonuclease [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 974

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 65/168 (38%), Gaps = 10/168 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             I  DIETTGLD  N  IIEIGAV++ + S T  T++V + P G           G+ +
Sbjct: 10  NVIYLDIETTGLDENNCEIIEIGAVKIKNLSVT--TYEVLIRPKGNVPVSIYKLCQGLKE 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L +      I  E       ++   I HN  F+  F++  +  I           D++
Sbjct: 68  EELMNSRHLEDIKKEL--LVFLEDLPLICHNGGFERKFLSYHIPEIKNQIF------DSM 119

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++    P  +        +    +     H  L DS     V   ++
Sbjct: 120 ELSAILEPWRKEYNLDSLIKSITILDKDEFHRGLEDSIDTLKVVNSLL 167


>gi|255974861|ref|ZP_05425447.1| exonuclease [Enterococcus faecalis T2]
 gi|256763360|ref|ZP_05503940.1| exonuclease [Enterococcus faecalis T3]
 gi|255967733|gb|EET98355.1| exonuclease [Enterococcus faecalis T2]
 gi|256684611|gb|EEU24306.1| exonuclease [Enterococcus faecalis T3]
          Length = 183

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 7/167 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M    FD ET            I  V++ +    +  F   + P          ++HGI 
Sbjct: 7   MNFYAFDFET--ASYDKHSACSIAIVKVENSRIVDE-FYTLIKPETPFF-WRNTQIHGIH 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + + P F     +      + N   +AHNA FD   +   L     +  +   +   
Sbjct: 63  ESDVVNAPKF-PEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +  +       + LN++C+   IT    + H AL DS   +++ ++
Sbjct: 122 KTSRKLFPEFPNHKLNTVCENLNIT--LNNHHDALEDSRACAEILLQ 166


>gi|308807965|ref|XP_003081293.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
 gi|116059755|emb|CAL55462.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
          Length = 1259

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 63/200 (31%), Gaps = 18/200 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--D 67
           IVFD+ETTGL  +  RIIE+ A  L D    +  F   + P      P    L GIT   
Sbjct: 196 IVFDLETTGLSKEKSRIIELAAQSLTD---PSAAFSTLVNPGRFNIPPAIKALTGITNSM 252

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNA-------EWIAHNAKFDVGFINAELQRINKDPLDP 120
               D PSF+    +F  F  +            +AHNA+           R     L  
Sbjct: 253 VSAPDVPSFAMAAEQFEMFIEQVRQSRPGAPVLLVAHNARQFDAAFIQYEYRRLGRELPS 312

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR------SKHGALLDSHLLSDVYIKM 174
           S          R+                              H A  D+ +L+D+  KM
Sbjct: 313 SWRFCDTLPLARQLLRPDGLGKFSMDVLRGHYDIELEGGDVQMHRAGTDARVLADILNKM 372

Query: 175 MVGGSQINFGFKTNEDRFFK 194
           +          +  E   F 
Sbjct: 373 LEHPRAKGNELRCLEQFSFS 392


>gi|148379300|ref|YP_001253841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931399|ref|YP_001383675.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936519|ref|YP_001387223.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. Hall]
 gi|148288784|emb|CAL82868.1| putative DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927443|gb|ABS32943.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932433|gb|ABS37932.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. Hall]
          Length = 855

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 4/176 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +VFD+E+TG+++  D I++I  +++ +  +   +FQ FL P         +       
Sbjct: 494 NVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLTPKKFVGDSYLVH-GFSDQ 552

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              ++  +   +  +F +F  +     + HN  FD+  +N+EL+R++ +        DTL
Sbjct: 553 FLKENGENKKVVLKDFLEFIKD--TVIVGHNVAFDISILNSELERLSLEKASFKTYYDTL 610

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            IARR +P+  N       +       +S H A+ D     DV + M+    +   
Sbjct: 611 DIARRFYPNLTNHKLETLSKL-FNTETKSSHDAMDDILATKDVLMAMLKEKVKPTI 665


>gi|86360676|ref|YP_472564.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42]
 gi|86284778|gb|ABC93837.1| probable polymerase epsilon subunit protein [Rhizobium etli CFN 42]
          Length = 326

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 65/180 (36%), Gaps = 15/180 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+ ++D IIEIGAV     D         ++  L    R   P+  +L GI
Sbjct: 75  VILDTETTGLNHRSDEIIEIGAVAFTFNDDGAVGDVVGIYGGLQQPSRPIPPDITRLTGI 134

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD  ++ +    +I     +   E     IAHNA FD  F  A                 
Sbjct: 135 TDVMVEGQ----TIDMPSLNALIEPADLIIAHNAGFDRPFCEAFSPIFAGKAW------- 183

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             S++     +   +   L    G        H A+ D H L ++  +    G       
Sbjct: 184 ACSVSEIDWSARGFEGTKLGYLVGQAGYFHGGHRAVDDCHALLEILDRQQGDGESPFAEL 243


>gi|332877643|ref|ZP_08445386.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684392|gb|EGJ57246.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 258

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 69/181 (38%), Gaps = 8/181 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG+D   DRI+EI  +++  + +K ++T+   + P        A  +HGITDE 
Sbjct: 11  FFDLETTGIDITKDRIVEISILKVYPNGNKESKTW--LVNP-TIPIPAMASAVHGITDEK 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P+F  +  +  +   + +      +           L+      L     +D  +I
Sbjct: 68  VANEPTFKELAKQIHNMIKDSDLAGYNSDRFDIPLLAEEMLRAGVDFDLGNRVTVDIQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          S   ++         H A  D++   ++    +     +    K   
Sbjct: 128 FHK----MEQRTLSAAYKFYCGKDLLEAHTAAADTNATYEILKAQLDKYDNLENNIKKLS 183

Query: 190 D 190
           +
Sbjct: 184 E 184


>gi|289167137|ref|YP_003445404.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
 gi|288906702|emb|CBJ21536.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
          Length = 1463

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNIVAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185
                    R+ L  L KR+G+     H + + A     LL     ++       +    
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +       +K  + + ++  +++     I
Sbjct: 601 NVDLISPDSYKKARIKHATIYVKNQVGLKNI 631


>gi|330444105|ref|YP_004377091.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58]
 gi|328807215|gb|AEB41388.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58]
          Length = 249

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D E TGLD K DRIIEI  V          + +  + P  ++ S E+ ++H I++ 
Sbjct: 9  FVCLDCEMTGLDVKKDRIIEIAIVRFTFERIL-DSIEFLINPE-KEVSIESQRIHHISNA 66

Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97
           LK++P F++++ +   F  + +      
Sbjct: 67 MLKNQPKFAAVYPKIKAFLKDDDNIVGHS 95


>gi|325912075|ref|ZP_08174473.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus iners
           UPII 143-D]
 gi|325476025|gb|EGC79193.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus iners
           UPII 143-D]
          Length = 933

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    ++DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +            N              ++         ++  
Sbjct: 69  QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175
            IA    PS +    +          HR+   AL+ + +L  +   I+M+
Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIDKIEML 178


>gi|288922213|ref|ZP_06416412.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f]
 gi|288346447|gb|EFC80777.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f]
          Length = 565

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       I EIGAV++             +        P    L GITD 
Sbjct: 29  FVVVDLETTGGSPATSEITEIGAVKVRGGQVLGEM-SSLVR-ASTPIPPVVSVLTGITDS 86

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            L   P+   +   F +    + A  +AHNA FD+GF+ A  Q           
Sbjct: 87  MLATAPTLDEVVPTFLE--FSRGAVLVAHNAAFDLGFLRAAAQACGYPVPAWEH 138


>gi|120599226|ref|YP_963800.1| ribonuclease T [Shewanella sp. W3-18-1]
 gi|166200022|sp|A1RKQ1|RNT_SHESW RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|120559319|gb|ABM25246.1| RNAse T [Shewanella sp. W3-18-1]
 gi|319426004|gb|ADV54078.1| ribonuclease T [Shewanella putrefaciens 200]
          Length = 223

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S+ D ++EI    +++ D      ++T    + P  G    P AL  +G
Sbjct: 20  VVIDVETAGFNSQTDALLEIAVTLLKMDDEGMLGIDKTLHFHIEPFEGANLEPAALAFNG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +     +      +AHNA FD GF++  ++R +  
Sbjct: 80  IDPNNPLRGAVSEKEAFLDIFKAVKKAQKAADCHRCIIVAHNAAFDHGFVSKAIERCDLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L   C   GI   ++  H AL D+   ++++  ++ 
Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACMMAGIPFDNKEAHSALYDTERTAELFCYIVN 199

Query: 177 GGSQIN 182
              Q+ 
Sbjct: 200 RWKQLG 205


>gi|315925789|ref|ZP_07921996.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC
          23263]
 gi|315620898|gb|EFV00872.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC
          23263]
          Length = 158

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 2/40 (5%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           +V D+ET GLD+  +RIIEIGAV++     T  TF+  +
Sbjct: 48 YVVIDLETDGLDAAKNRIIEIGAVKVDGQ--TVSTFEQLI 85


>gi|291557306|emb|CBL34423.1| CRISPR-associated protein Cas2, E. coli subfamily [Eubacterium
           siraeum V10Sc8a]
          Length = 268

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTGL+   D IIE+GAV + +      T+ V +    +K     ++L GIT+E L
Sbjct: 107 VIDIETTGLNPD-DEIIELGAVTVENG-SVAETYSVLVK-TDKKIPEAIIRLTGITEELL 163

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             + +  S     +          + HN  FD+ FI +       D   PS+IIDT+ I+
Sbjct: 164 ASEGTDKSKALSEFAM-RCNGKPLVGHNIGFDLNFIKSACAENKID-FVPSKIIDTVKIS 221

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           R+    +   L ++   + +  +    H AL D  L   +Y K+
Sbjct: 222 RKLLDINSYSLAAIADYFDLHYNKDRIHRALDDCLLTQRIYEKL 265


>gi|315604561|ref|ZP_07879624.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313573|gb|EFU61627.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 525

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 4/166 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGL ++   I EIGAV + +       F   + P G                
Sbjct: 10  WVVVDLETTGLGAR-AEITEIGAVRVREGRLC-EEFSSLVRPVGPIPPAITALTGITPAM 67

Query: 69  FLKDKPSFSSIFSEFWD--FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                P  + +        F  +     +AHNA FD+GF+       +        +   
Sbjct: 68  VRGADPIATVLDRFLTWAGFEAKDPVVLVAHNAPFDIGFLRRAAAACSLPWPRVRVVDTL 127

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                        +            +    H AL D+   ++V +
Sbjct: 128 ALARLALPRPIVRNHKLATVASYFGTATVPGHRALGDARATAEVLL 173


>gi|188589009|ref|YP_001921284.1| putative exonuclease [Clostridium botulinum E3 str. Alaska E43]
 gi|188499290|gb|ACD52426.1| putative exonuclease [Clostridium botulinum E3 str. Alaska E43]
          Length = 974

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 10/168 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             I  DIETTGLD  N  IIEIGAV++ + S T  T++V + P G           G+ +
Sbjct: 10  NVIYLDIETTGLDENNCEIIEIGAVKIKNLSVT--TYEVLIRPKGNVPVSIYKLCQGLKE 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L +      I  E       ++   I HN  F+  F++  +  I  +        D++
Sbjct: 68  EDLMNSRHLEDIKKEL--LVFLEDLPLICHNGGFERKFLSYHIPEIKNEIF------DSM 119

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++    P  +        +    +     H  L DS     V   ++
Sbjct: 120 ELSAILEPWRKEYNLDSLIKSITILDKDEFHRGLEDSIDTLKVVNSLL 167


>gi|298207508|ref|YP_003715687.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus
           HTCC2559]
 gi|83850144|gb|EAP88012.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus
           HTCC2559]
          Length = 1454

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 75/237 (31%), Gaps = 19/237 (8%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL    +          R I+I      D  K      + + P+G     +
Sbjct: 2   YLIFDTETTGLPKNYNAPITDTDNWPRCIQIAWQLHDDMGKLVSHDDMLIKPDGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           + ++HGI+ E               ++   +Q    +  N  FD+  + AE  R   D  
Sbjct: 62  SEQIHGISTELADKNGVDLVDSLHKFNEALKQTKFVVGQNVAFDINIMGAEFYRKGIDNP 121

Query: 119 ---------DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                          +   I   +    +    +   ++    +    H A  D    + 
Sbjct: 122 LQELPVLDTCTETTAELCKIPGGRGGKFKLPTLTELHQFLFNKAFNEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK 226
            +++++            + D F    ++    I L+        + +++     +K
Sbjct: 182 CFLELIRKRIYTAEELDVSPDYFENFSEENPQTIQLIGLKHINLKKASEQIRKALEK 238


>gi|91785922|ref|YP_546874.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666]
 gi|91695147|gb|ABE41976.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666]
          Length = 203

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 7   MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+ I V D ETTGL     DR  E+  V +      +R FQ  +   G +       L G
Sbjct: 1   MKPIAVIDFETTGLSPAMGDRATEVAIVLVEGGRVVDR-FQSLMN-AGVRIPAFITSLTG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           IT+  +   P  +++ ++   F    NA  +AHNA FD  F 
Sbjct: 59  ITNAMVASAPDAATVMTDANRFV--GNAPLVAHNASFDRKFW 98


>gi|332705935|ref|ZP_08426009.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L]
 gi|332355339|gb|EGJ34805.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L]
          Length = 818

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           VFD+ETTG     D ++EI A+ L+D  K  R F  ++
Sbjct: 465 VFDVETTGFSVSQDEVVEIAAIRLVDGKKQAR-FHAYI 501


>gi|329117787|ref|ZP_08246504.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parauberis NCFD 2020]
 gi|326908192|gb|EGE55106.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parauberis NCFD 2020]
          Length = 1465

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 6/172 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD 
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMYKGNIL-EQFDEFIDP-GHPLSAFTTELTGITDN 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L        +  EF  F  +     +AHNA FDVGF+NA   R N   +    I     
Sbjct: 485 HLVGAKPLHQVLVEFQAFCKD--TVLVAHNASFDVGFMNANYARENLPKITQPVIDTLEF 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R+ L  L KR+ + + H   H A  D+     +    +    +
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVALDH--HHMANYDAEATGRLLFIFLKDARE 592


>gi|312871734|ref|ZP_07731822.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           3008A-a]
 gi|311092676|gb|EFQ51032.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           3008A-a]
          Length = 933

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    ++DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +            N              ++         ++  
Sbjct: 69  QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175
            IA    PS +    +          HR+   AL+ + +L  +   I+M+
Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIDKIEML 178


>gi|331265607|ref|YP_004325237.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
 gi|326682279|emb|CBY99896.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
          Length = 1463

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GIT +
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITYD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|302191304|ref|ZP_07267558.1| Rad3-related DNA helicase [Lactobacillus iners AB-1]
          Length = 933

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    ++DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +            N              ++         ++  
Sbjct: 69  QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175
            IA    PS +    +          HR+   AL+ + +L  +   I+M+
Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIEKIEML 178


>gi|162455854|ref|YP_001618221.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum 'So ce
           56']
 gi|161166436|emb|CAN97741.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum 'So ce
           56']
          Length = 258

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG D   DRIIE+G V         R +   + P GR    E+  +HGI D  +
Sbjct: 47  FVDVETTGRDPAGDRIIELGIVIGRSGEILTR-YNWLIHP-GRPIPAESTAIHGIKDADV 104

Query: 71  KDKPSF 76
           + KPSF
Sbjct: 105 EGKPSF 110


>gi|118471901|ref|YP_888535.1| hypothetical protein MSMEG_4259 [Mycobacterium smegmatis str. MC2
           155]
 gi|118173188|gb|ABK74084.1| DNA polymerase III, epsilon subunit [Mycobacterium smegmatis str.
           MC2 155]
          Length = 672

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 78/224 (34%), Gaps = 17/224 (7%)

Query: 9   KIVFDIETTGLDSKN-------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            +V D+ETTG  +K        D I EIGAV++             + P GR   P+ ++
Sbjct: 76  FVVVDLETTGGRAKATAPGGLCDAITEIGAVKVRGGEVLGE-LATLVDP-GRAIPPQIVE 133

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT   ++D P   ++   F +    + A  +AHNA FD+GF+ A  +R       P 
Sbjct: 134 LTGITTAMVRDAPRIDAVLPMFLE--FARGAVLVAHNAGFDIGFLRAAAERTQLTWPRPP 191

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +       R         +           S    H AL D+    DV   ++      
Sbjct: 192 VLCTVKLARRVLTRDEAPSVRLSELARLFGASTTPTHRALDDARATVDVLHGLIERVGNQ 251

Query: 182 NFGFKTN-----EDRFFKEEKKTVPNISLLKRDKPLFTR-ITKE 219
                 +      D    + +       L  R      R  + E
Sbjct: 252 GVHTLADLRAYLPDTTPAQRRNRALADGLPNRPGVYLFRGPSDE 295


>gi|330985867|gb|EGH83970.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 237

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 68/200 (34%), Gaps = 6/200 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ET+GL+   D+++ IGAV + D +    + F+   L  + + +    +     
Sbjct: 42  RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVLIHGLAP 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +      +P+ + +            +  +  +A FD   ++  L+      L       
Sbjct: 102 SAIAAGCEPAEALLDFME----FVGESPILGFHAPFDQHMLSRALKESLDYRLRHPFFDA 157

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     ++              +    +H A  D+ + +++ + +     +     
Sbjct: 158 AEIAPMLCEQANLRHAGLDDWTQFFGLHAEERHNASADALVTAELALILFSHARRQQIDS 217

Query: 186 KTNEDRFFKEEKKTVPNISL 205
               +    + ++   + S 
Sbjct: 218 PRLLEERLGQWRRRKQSHSF 237


>gi|302188448|ref|ZP_07265121.1| exonuclease [Pseudomonas syringae pv. syringae 642]
          Length = 237

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 68/200 (34%), Gaps = 6/200 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ET+GL+   D+++ IGAV + D +    + F+   L  + + +    +     
Sbjct: 42  RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVLIHGLAP 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +      +P  + +           ++  +  +A FD   ++  L+      L       
Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLSRALKESLGYRLQHPFFDA 157

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     ++              +    +H A  D+ + +++ + +     +     
Sbjct: 158 AEIAPMLCEHANLRHAGLDDWTRFFGLHAEERHHASADALVTAELALILFSHARRQQIDS 217

Query: 186 KTNEDRFFKEEKKTVPNISL 205
               +    + ++   + S 
Sbjct: 218 PLRLEEALGQWRRRRQSHSF 237


>gi|163787271|ref|ZP_02181718.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium
           ALC-1]
 gi|159877159|gb|EDP71216.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium
           ALC-1]
          Length = 1128

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 71/229 (31%), Gaps = 19/229 (8%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R I+I                  + P G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDAMGNCIEHQDYLVKPEGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A K+HGI+ E  +++    S   E ++    +    +  N KFD+  + AE  R +    
Sbjct: 62  AEKIHGISTELAQEQGVSLSEVLEKFNTALSKTKFVVGQNVKFDLNIMGAEFVREDVANP 121

Query: 119 ---------DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                              I   ++   +    +   ++         H A  D    + 
Sbjct: 122 LQELPVLDTCTEHTASLCQIPGGRYGKFKLPTLTELHQFLFNTPFGEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
            + +++              D F K  ++    I L+        R + 
Sbjct: 182 CFFELIRKQQYTQEQLDVQPDYFQKFSEENPDTIQLIGLKHINLKRASA 230


>gi|325298421|ref|YP_004258338.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
 gi|324317974|gb|ADY35865.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
          Length = 258

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 63/171 (36%), Gaps = 8/171 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +   DRI+EI  +++  + ++ ++T  + + P        +  +HGI DE
Sbjct: 10  VFFDLETTGTNINTDRIVEICYLKIYPNGNEESKT--MRINPEMH-IPETSTAIHGIHDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  I  E        +      N       +   L+      L   + ID   
Sbjct: 67  DVADCPTFKQIAKELAKSIEGADIAGFNSNRFDVPVLVEEFLRAGIDIDLSKRKFIDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           I  +          S   ++    +    H A  D+    +V    +    
Sbjct: 127 IYHK----LEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLKAQLDRYP 173


>gi|169831719|ref|YP_001717701.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638563|gb|ACA60069.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 236

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL     D +I +  V ++     N  F   + P  R+    A  + GIT E 
Sbjct: 51  VIDTETTGLRPDAGDEVISVACVRVVSAKIQNDYFYTLVDPE-REVPELAATITGITTER 109

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++ +P    +                  N +FD+ F+N  L+R     L+P  ++D LS+
Sbjct: 110 VQGQPVLEKVLPRMLREMAG--GVITGFNIQFDLVFLNNGLKRKCGTTLNPPMVLDVLSL 167

Query: 130 ARRKHP 135
            R   P
Sbjct: 168 CRILKP 173


>gi|306824435|ref|ZP_07457781.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304433222|gb|EFM36192.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 1463

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185
                    R+ L  L KR+G+     H + + A     LL     ++       N    
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTNLARL 600

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +       +K  + + ++  +++     I
Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631


>gi|126651265|ref|ZP_01723475.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. B14905]
 gi|126592103|gb|EAZ86169.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. B14905]
          Length = 914

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 8/175 (4%)

Query: 13  DIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D+ETTG      DR+I+I  V + D  +  RT+  F+ P G+        L  IT+E +K
Sbjct: 2   DLETTGHSPANGDRMIQIAIVIMKD-WEIERTYTKFINP-GKAIPSFIQDLTHITNEDVK 59

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D   F       ++   +    ++AHNA FD+ F+ AE +R         ++        
Sbjct: 60  DSYPFEEHADYIYELLAD--CVFVAHNADFDLSFLQAEFKRAGLPKWQGKKMDTVELAKI 117

Query: 132 RKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
               S    L  L     I    +HR+   A   + L    + +++    Q+   
Sbjct: 118 LFPMSLGFKLGDLAADLNIELANAHRADDDARATAELFKCCWKELLNL-PQLTLE 171


>gi|330970909|gb|EGH70975.1| exonuclease [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 237

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 69/200 (34%), Gaps = 6/200 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ET+GL+   D+++ IGAV + D +    + F+   L  + + +    +     
Sbjct: 42  RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVLIHGLAP 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +      +P  + +           ++  +  +A FD   ++  L+      L  +    
Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLSRALKESLGYRLQHAFFDA 157

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     ++              +    +H A  D+ + +++ + +     +     
Sbjct: 158 AEIAPMLCEHANLRHAGLDDWTRFFGLHAEQRHHASADALVTAELALILFSHARRQQIDS 217

Query: 186 KTNEDRFFKEEKKTVPNISL 205
               +    + ++   + S 
Sbjct: 218 PLRLEEALGQWRRRRQSHSF 237


>gi|326800820|ref|YP_004318639.1| DNA polymerase III subunit epsilon [Sphingobacterium sp. 21]
 gi|326551584|gb|ADZ79969.1| DNA polymerase III, epsilon subunit [Sphingobacterium sp. 21]
          Length = 463

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 7/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   + DIETTG  +    I EI A+ + D +     ++  + P           L GI+
Sbjct: 1   MEYAIVDIETTGGHAAGHGITEI-AICIHDGAGICHRYETLVNPQAH-IPLHISALTGIS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E + D P+F+ I +  +         ++AHN  FD  FI   L         P      
Sbjct: 59  NEMVADAPTFAEIAATVYQLLEG--RIFVAHNVNFDYSFIKHHLAFCGYSWNAPKLCTVR 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           LS        +   L  LC++  I+I   ++H A  D+     ++  ++  G 
Sbjct: 117 LSRKVLPG-FASYSLGKLCQQLNISI--TNRHRAGGDATATGILFSLLLEKGP 166


>gi|312875685|ref|ZP_07735686.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2053A-b]
 gi|311088939|gb|EFQ47382.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2053A-b]
          Length = 933

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    ++DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +            N              ++         ++  
Sbjct: 69  QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175
            IA    PS +    +          HR+   AL+ + +L  +   I+M+
Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIEKIEML 178


>gi|228473352|ref|ZP_04058106.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
 gi|228275254|gb|EEK14052.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
          Length = 164

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 7/166 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +     +  IG V + +      T+   + P     SP   ++HG++  
Sbjct: 4   FVALDFET--ANQYRSSVCSIGLVFVENNEIV-DTYYQLIKPAPNYYSPFCTQVHGLSQY 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +  P F  ++ E      +     +AHN+ FD G +   L                 +
Sbjct: 61  DTEKAPLFPEVWKEILPKIKD--LPLVAHNSMFDEGCLREVLAYYALPQHTNPFFCTLRA 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +       + L+++   +G     +  H AL D+   + + +++
Sbjct: 119 ARKSLPQLVNHKLDTVSAYFGFD--LKQHHHALADAEACAHIALEL 162


>gi|125718854|ref|YP_001035987.1| DNA polymerase III PolC [Streptococcus sanguinis SK36]
 gi|166217455|sp|A3CQI2|DPO3_STRSV RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|125498771|gb|ABN45437.1| DNA polymerase III polC-type, putative [Streptococcus sanguinis
           SK36]
          Length = 1462

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +++      +  EF +F  +  +  +AHNA FDVGF+N   +R     +       ++ 
Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKIIQPVIDTLEF 539

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
                 ++        +   +  +   H + + A     LL      +       N    
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T+       +K  V + ++  +++
Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624


>gi|66047927|ref|YP_237768.1| exonuclease [Pseudomonas syringae pv. syringae B728a]
 gi|63258634|gb|AAY39730.1| Exonuclease [Pseudomonas syringae pv. syringae B728a]
          Length = 237

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 69/200 (34%), Gaps = 6/200 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ET+GL+   D+++ IGAV + D +    + F+   L  + + +    +     
Sbjct: 42  RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVLIHGLAP 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +      +P  + +           ++  +  +A FD   ++  L+      L  +    
Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLSRALKESLGYRLQHAFFDA 157

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     ++              +    +H A  D+ + +++ + +     +     
Sbjct: 158 AEIAPMLCEHANLRHAGLDDWTRFFGLHAEQRHHASADALVTAELALILFSHARRQQIDS 217

Query: 186 KTNEDRFFKEEKKTVPNISL 205
               +    + ++   + S 
Sbjct: 218 PLRLEEALGQWRRRRQSHSF 237


>gi|29377213|ref|NP_816367.1| exonuclease [Enterococcus faecalis V583]
 gi|227554221|ref|ZP_03984268.1| DNA-directed DNA polymerase III [Enterococcus faecalis HH22]
 gi|229549147|ref|ZP_04437872.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 29200]
 gi|255971865|ref|ZP_05422451.1| exonuclease [Enterococcus faecalis T1]
 gi|256957963|ref|ZP_05562134.1| exonuclease [Enterococcus faecalis DS5]
 gi|256961017|ref|ZP_05565188.1| exonuclease [Enterococcus faecalis Merz96]
 gi|257079901|ref|ZP_05574262.1| exonuclease [Enterococcus faecalis JH1]
 gi|257087703|ref|ZP_05582064.1| exonuclease [Enterococcus faecalis D6]
 gi|293384593|ref|ZP_06630459.1| exonuclease [Enterococcus faecalis R712]
 gi|293386822|ref|ZP_06631393.1| exonuclease [Enterococcus faecalis S613]
 gi|294779917|ref|ZP_06745299.1| exonuclease [Enterococcus faecalis PC1.1]
 gi|300861254|ref|ZP_07107341.1| exonuclease [Enterococcus faecalis TUSoD Ef11]
 gi|307269234|ref|ZP_07550588.1| exonuclease [Enterococcus faecalis TX4248]
 gi|307276973|ref|ZP_07558083.1| exonuclease [Enterococcus faecalis TX2134]
 gi|312906419|ref|ZP_07765427.1| exonuclease [Enterococcus faecalis DAPTO 512]
 gi|312951911|ref|ZP_07770799.1| exonuclease [Enterococcus faecalis TX0102]
 gi|312979422|ref|ZP_07791110.1| exonuclease [Enterococcus faecalis DAPTO 516]
 gi|29344679|gb|AAO82437.1| exonuclease [Enterococcus faecalis V583]
 gi|227176668|gb|EEI57640.1| DNA-directed DNA polymerase III [Enterococcus faecalis HH22]
 gi|229305701|gb|EEN71697.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 29200]
 gi|255962883|gb|EET95359.1| exonuclease [Enterococcus faecalis T1]
 gi|256948459|gb|EEU65091.1| exonuclease [Enterococcus faecalis DS5]
 gi|256951513|gb|EEU68145.1| exonuclease [Enterococcus faecalis Merz96]
 gi|256987931|gb|EEU75233.1| exonuclease [Enterococcus faecalis JH1]
 gi|256995733|gb|EEU83035.1| exonuclease [Enterococcus faecalis D6]
 gi|291078139|gb|EFE15503.1| exonuclease [Enterococcus faecalis R712]
 gi|291083825|gb|EFE20788.1| exonuclease [Enterococcus faecalis S613]
 gi|294453029|gb|EFG21449.1| exonuclease [Enterococcus faecalis PC1.1]
 gi|295113676|emb|CBL32313.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Enterococcus sp. 7L76]
 gi|300850293|gb|EFK78043.1| exonuclease [Enterococcus faecalis TUSoD Ef11]
 gi|306506396|gb|EFM75556.1| exonuclease [Enterococcus faecalis TX2134]
 gi|306514453|gb|EFM83014.1| exonuclease [Enterococcus faecalis TX4248]
 gi|310627573|gb|EFQ10856.1| exonuclease [Enterococcus faecalis DAPTO 512]
 gi|310630100|gb|EFQ13383.1| exonuclease [Enterococcus faecalis TX0102]
 gi|311287793|gb|EFQ66349.1| exonuclease [Enterococcus faecalis DAPTO 516]
 gi|315025497|gb|EFT37429.1| exonuclease [Enterococcus faecalis TX2137]
 gi|315035108|gb|EFT47040.1| exonuclease [Enterococcus faecalis TX0027]
 gi|315154299|gb|EFT98315.1| exonuclease [Enterococcus faecalis TX0031]
 gi|315159608|gb|EFU03625.1| exonuclease [Enterococcus faecalis TX0312]
 gi|315162098|gb|EFU06115.1| exonuclease [Enterococcus faecalis TX0645]
 gi|315573774|gb|EFU85965.1| exonuclease [Enterococcus faecalis TX0309B]
 gi|315580288|gb|EFU92479.1| exonuclease [Enterococcus faecalis TX0309A]
 gi|323481659|gb|ADX81098.1| DNA polymerase III, epsilon subunit, 3'-5' exonuclease family
           protein [Enterococcus faecalis 62]
 gi|329578017|gb|EGG59432.1| exonuclease [Enterococcus faecalis TX1467]
          Length = 177

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 7/167 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M    FD ET            I  V++ +    +  F   + P          ++HGI 
Sbjct: 1   MNFYAFDFET--ASYDKHSACSIAIVKVENSRIVDE-FYTLIKPETPFF-WRNTQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + + P F     +      + N   +AHNA FD   +   L     +  +   +   
Sbjct: 57  ESDVVNAPKF-PEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +  +       + LN++C+   IT    + H AL DS   +++ ++
Sbjct: 116 KTSRKLFPEFPNHKLNTVCENLNIT--LNNHHDALEDSRACAEILLQ 160


>gi|224023848|ref|ZP_03642214.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM
           18228]
 gi|224017070|gb|EEF75082.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM
           18228]
          Length = 258

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 12/200 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +   DRI+EI  +++  + ++ ++T  + + P G      +  +HGI D 
Sbjct: 10  VFFDLETTGTNINTDRIVEICYLKVYPNGNEESKT--MRINP-GMHIPEASSAIHGIYDA 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +  +        +      N       +   L+      L   + ID   
Sbjct: 67  DVADCPTFKEVAKDIARDLEGADIAGFNSNRFDVPVLVEEFLRAGIDIDLTRRKFIDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I  +          S   ++    +    H A  D+    +V    +            N
Sbjct: 127 IYHK----LEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLKAQLDHYP----DVLEN 178

Query: 189 EDRFFKEEKKTVPNISLLKR 208
           +  F  E      N+    R
Sbjct: 179 DINFLSEYSSYNKNVDFAGR 198


>gi|315653552|ref|ZP_07906472.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195]
 gi|315488914|gb|EFU78556.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195]
          Length = 936

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    ++DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 14  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 71

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +            N              ++         ++  
Sbjct: 72  QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 131

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175
            IA    PS +    +          HR+   AL+ + +L  +   I+M+
Sbjct: 132 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIEKIEML 181


>gi|259500615|ref|ZP_05743517.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335]
 gi|259167999|gb|EEW52494.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335]
          Length = 936

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    ++DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 14  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 71

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +            N              ++         ++  
Sbjct: 72  QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 131

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175
            IA    PS +    +          HR+   AL+ + +L  +   I+M+
Sbjct: 132 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIEKIEML 181


>gi|298372076|ref|ZP_06982066.1| exonuclease [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274980|gb|EFI16531.1| exonuclease [Bacteroidetes oral taxon 274 str. F0058]
          Length = 252

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 79/204 (38%), Gaps = 10/204 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG++   DRI+E+  +++  + +KT++T  + + P       ++  +HGI D+
Sbjct: 10  VFFDLETTGINVSTDRIVELTYLKVEPNGNKTSKT--IKINPEMH-IPEQSSAIHGIYDQ 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  I +         +              +   L+      L   + +D + 
Sbjct: 67  DVADCPTFRQIAANLAKDIEGCDLAGFNSVNFDIPLLVEEFLRVGVDIDLKKRKFVDVMV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI--NFGFK 186
           I  +K P       +   ++    +  + H +  D+    ++  + +     +  +  F 
Sbjct: 127 IFYKKEP----RNLAAAYKFYCDKTLENAHSSEADTLATFEILEEQLNKYPDLENSVDFL 182

Query: 187 TNEDRFFKEEKKTVPNISLLKRDK 210
           +      K        I   ++ +
Sbjct: 183 SEFSSHNKHADYAGRIIYDSRKRE 206


>gi|289674377|ref|ZP_06495267.1| exonuclease [Pseudomonas syringae pv. syringae FF5]
          Length = 237

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 69/200 (34%), Gaps = 6/200 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ET+GL+   D+++ IGAV + D +    + F+   L  + + +    +     
Sbjct: 42  RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVLIHGLAP 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +      +P  + +           ++  +  +A FD   ++  L+      L  +    
Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLSRALKESLGYRLQHAFFDV 157

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     ++              +    +H A  D+ + +++ + +     +     
Sbjct: 158 AEIAPMLCEHANLRHAGLDDWTRFFGLHAEQRHHASADALVTAELALILFSHARRQQIDS 217

Query: 186 KTNEDRFFKEEKKTVPNISL 205
               +    + ++   + S 
Sbjct: 218 PLRLEEALGQWRRRRQSHSF 237


>gi|329920271|ref|ZP_08277055.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus iners SPIN 1401G]
 gi|328936316|gb|EGG32764.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus iners SPIN 1401G]
          Length = 933

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    ++DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +            N              ++         ++  
Sbjct: 69  QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175
            IA    PS +    +          HR+   AL+ + +L  +   I+M+
Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIEKIEML 178


>gi|329955851|ref|ZP_08296654.1| exonuclease [Bacteroides clarus YIT 12056]
 gi|328525231|gb|EGF52281.1| exonuclease [Bacteroides clarus YIT 12056]
          Length = 256

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +  +DRI+EI  +++  + ++  +T +  + P       EA  +HGI DE
Sbjct: 10  VFFDLETTGTNINSDRIVEICYLKVYPNGNEETKTMR--INPEMH-IPAEASAVHGIYDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +     +     +      N           L+      +   + +D   
Sbjct: 67  DVADCPTFKEVARGIANDIEGCDLAGFNSNRFDIPVLAEEFLRADVDIDMSRRKFVDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           I  +          S   ++    +    H A  D+    +V +  +     +
Sbjct: 127 IFHK----MEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLMSQLDRYPDL 175


>gi|39996485|ref|NP_952436.1| exonuclease [Geobacter sulfurreducens PCA]
 gi|39983365|gb|AAR34759.1| exonuclease [Geobacter sulfurreducens PCA]
 gi|298505487|gb|ADI84210.1| 3'-to-5' exonuclease, putative [Geobacter sulfurreducens KN400]
          Length = 181

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 5/172 (2%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           KN   +   D+ETTGL     DR++E+ AV + +    +  F   +    +        +
Sbjct: 2   KNHHLQAAIDVETTGLFPGYGDRVVEVAAVLVDEGQIVSE-FSSLIR-VTKAIPRHVSMI 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGIT++ L D+P    ++    DF     A  +AHNA+FD+ F+  E  R+       S 
Sbjct: 60  HGITNDMLADQPLPEEVYPALGDFIGT--ALLVAHNARFDLAFLRHEFGRLGLSLNSRSA 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               L+  R    +           +G        H AL D+ L + V+ ++
Sbjct: 118 CTLELARRRLPELTDHRLETVYQHLFGAVPEGTRCHRALDDARLTARVWGEL 169


>gi|325695495|gb|EGD37395.1| DNA polymerase III PolC [Streptococcus sanguinis SK150]
          Length = 1462

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +++      +  EF +F  +  +  +AHNA FDVGF+N   +R     +       ++ 
Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
                 ++        +   +  +   H + + A     LL      +       N    
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T+       +K  V + ++  +++
Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624


>gi|324989747|gb|EGC21690.1| DNA polymerase III PolC [Streptococcus sanguinis SK353]
          Length = 1462

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +++      +  EF +F  +  +  +AHNA FDVGF+N   +R     +       ++ 
Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
                 ++        +   +  +   H + + A     LL      +       N    
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T+       +K  V + ++  +++
Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624


>gi|297584389|ref|YP_003700169.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           selenitireducens MLS10]
 gi|297142846|gb|ADH99603.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           selenitireducens MLS10]
          Length = 935

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 63/168 (37%), Gaps = 7/168 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++ D+ETTG+   K DRII+I    L D     R F  ++    +        L GI+
Sbjct: 3   RYVILDLETTGVAYDKGDRIIQIAYQVLEDQEVLKR-FSTYIN-YDKPVPAFIQSLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E LK+ P F  +  E      E      AHN +FD+ F+N  L+           I   
Sbjct: 61  GEHLKNAPLFEEVAPEILSDLEEAYFV--AHNVEFDLKFLNESLEDAGYASFQGPVIDTV 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                         L+ L K    T    + H A  D      ++ ++
Sbjct: 119 ELARICLPSEDSYRLSDLAKTVQATH--TAPHQADSDVEATRALFNEL 164


>gi|152970543|ref|YP_001335652.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|330015632|ref|ZP_08308213.1| ribonuclease T [Klebsiella sp. MS 92-3]
 gi|166228567|sp|A6TA01|RNT_KLEP7 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|150955392|gb|ABR77422.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|328531231|gb|EGF58076.1| ribonuclease T [Klebsiella sp. MS 92-3]
          Length = 215

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+  ++ ++     + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I     +           +   +  +     +   A  +AHNA FD  F     +R    
Sbjct: 80  INPHDPQRGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACIAAGMPFDGAQAHSALYDTEQTAQLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|77461407|ref|YP_350914.1| exonuclease [Pseudomonas fluorescens Pf0-1]
 gi|77385410|gb|ABA76923.1| putative DNA poymerase [Pseudomonas fluorescens Pf0-1]
          Length = 235

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 69/200 (34%), Gaps = 6/200 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTGL+   DR++ IGAV + D +   ++ F+    C   +      +     
Sbjct: 40  RWVVLDLETTGLNLSKDRVLSIGAVVIEDGAIDFSQQFERTLQCHELKLGPSVLIHGLAP 99

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +      +P  +    E  +F  +  +  +A +A FD   +   L+      L    +  
Sbjct: 100 SAIAAGSEP--TEALVELLEFIGD--SPVLAFHASFDQHMLGRALKEHLGHKLQTVFLDV 155

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +   +           +    +H A  D+   +++ + +     Q     
Sbjct: 156 AQIAPLVCPQAHIREAGLDEWIDWFKLEVFERHHASADALATAELALILFSRARQQQIHS 215

Query: 186 KTNEDRFFKEEKKTVPNISL 205
             N  +   + K+     S 
Sbjct: 216 PLNLQQRLSQWKRRQQTHSF 235


>gi|332365112|gb|EGJ42875.1| DNA polymerase III PolC [Streptococcus sanguinis SK1059]
          Length = 1462

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +++      +  EF +F  +  +  +AHNA FDVGF+N   +R     +       ++ 
Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
                 ++        +   +  +   H + + A     LL      +       N    
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T+       +K  V + ++  +++
Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624


>gi|332359305|gb|EGJ37126.1| DNA polymerase III PolC [Streptococcus sanguinis SK49]
          Length = 1462

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +++      +  EF +F  +  +  +AHNA FDVGF+N   +R     +       ++ 
Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
                 ++        +   +  +   H + + A     LL      +       N    
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T+       +K  V + ++  +++
Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624


>gi|327472427|gb|EGF17858.1| DNA polymerase III PolC [Streptococcus sanguinis SK408]
          Length = 1462

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +++      +  EF +F  +  +  +AHNA FDVGF+N   +R     +       ++ 
Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
                 ++        +   +  +   H + + A     LL      +       N    
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T+       +K  V + ++  +++
Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624


>gi|152979466|ref|YP_001345095.1| ribonuclease T [Actinobacillus succinogenes 130Z]
 gi|150841189|gb|ABR75160.1| ribonuclease T [Actinobacillus succinogenes 130Z]
          Length = 226

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 72/188 (38%), Gaps = 15/188 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET GL+ + D ++E+ AV  ++ D      ++T+   + P  G   +PE++K++G
Sbjct: 30  VVIDVETAGLNCQTDGLLELAAVTLKMNDRGDLLPDQTYHCHIRPFEGAGINPESMKING 89

Query: 65  ITDEFLKDKPS----------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           I  E                    +          Q +  +AHNA FD GF+ A  +R  
Sbjct: 90  IDLESPIRNAIAVSESEAITGLFQMVRRGQKNAGCQRSIIVAHNAAFDHGFVMAAAERTK 149

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                        +         +  L   C+   I       H AL D+   ++++  M
Sbjct: 150 IKRNPFHPFGSFDTATLSGLMFGQTVLIKACQSASIPFDSNQAHSALYDTERTAELFCYM 209

Query: 175 MVGGSQIN 182
           +     + 
Sbjct: 210 VNHLKALG 217


>gi|295693069|ref|YP_003601679.1| CRISPR-associated protein, cas2 [Lactobacillus crispatus ST1]
 gi|295031175|emb|CBL50654.1| CRISPR-associated protein, Cas2 [Lactobacillus crispatus ST1]
          Length = 298

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 65/168 (38%), Gaps = 7/168 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V DIETTGL+ + D+II IGA++ L +       F   +  +                  
Sbjct: 131 VLDIETTGLNLEKDKIISIGAIKYLENN--DCEKFYRLIKVDTEVPDNIEKITQLNKGVL 188

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                   +   +   F  +     + +N  FD+ F+N + ++     L    +    ++
Sbjct: 189 ANKGIDIKTALLDLRKFLAD--RIVVGYNLPFDINFLNRDFKKYCHYSLLNECVDLLSAV 246

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            ++        L+++ + Y I   + + H +L D+    ++  K++  
Sbjct: 247 KKKNVFLDNYHLSTVLENYNIK--NSNPHNSLADAVATMELLKKLIKN 292


>gi|282880255|ref|ZP_06288971.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
 gi|281305850|gb|EFA97894.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
          Length = 905

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 9/181 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGR--------KNSPEAL 60
           +VFD ETTGL+   D I++I AV +          F VF+  N           N     
Sbjct: 523 VVFDTETTGLNVFEDDIVQIAAVRMRQGCVVPGSEFVVFMRTNREIPRKLGNIDNPLIEE 582

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
             H       +    F           +  + ++   N        + +L+       D 
Sbjct: 583 IQHHQLYSPSEGLKMFLEYVGNSRLLGHNADYDYHILNFNLQRYLPDIQLEERCNMYFDS 642

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++I  L    +++           +     ++    H          +     +    +
Sbjct: 643 LKLIRLLEPNLKEYKLKYLLSVLHLEGQNSHLADADVHATCSVVRHCYEKAKLHINSQRE 702

Query: 181 I 181
            
Sbjct: 703 W 703


>gi|116873334|ref|YP_850115.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742212|emb|CAK21336.1| ATP-dependent helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 928

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + R IV D+ETTG  + + DRII+  A  +    +   T+  FL P  +       +L 
Sbjct: 2   KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYSTFLNPE-KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           GI  + +K+ P F  +         +    ++AHN  FD  F+  E+
Sbjct: 60  GIAPKDVKNAPLFEDVAPIIASLLED--TIFVAHNVSFDWTFLEREM 104


>gi|330898819|gb|EGH30238.1| exonuclease [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 237

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 69/200 (34%), Gaps = 6/200 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ET+GL+   D+++ IGAV + D +    + F+   L  + + +    +     
Sbjct: 42  RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVLIHGLAP 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +      +P  + +           ++  +  +A FD   ++  L+      L  +    
Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLSRALKESLGYRLQHAFFDA 157

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     ++              +    +H A  D+ + +++ + +     +     
Sbjct: 158 AEIAPMLCEHANLRHAGLDDWTRFFGLHAEQRHHASADALVTAELALILFSHARRQQIDS 217

Query: 186 KTNEDRFFKEEKKTVPNISL 205
               +    + ++   + S 
Sbjct: 218 PLRLEEALGQWRRRRQSHSF 237


>gi|312874151|ref|ZP_07734185.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2052A-d]
 gi|311090221|gb|EFQ48631.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2052A-d]
          Length = 933

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    ++DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +            N              ++         ++  
Sbjct: 69  QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175
            IA    PS +    +          HR+   AL+ + +L  +   I+M+
Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIDKIEML 178


>gi|294155324|ref|YP_003559708.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
           MP145]
 gi|291600469|gb|ADE19965.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
           MP145]
          Length = 1447

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 3/176 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FDIETTGL  +   +IE GA  + + S  +R  Q F+       S   + L GITD+
Sbjct: 416 YVCFDIETTGLSPRYHELIEFGATIIKNGSVISRE-QFFIK-AKNSLSAFTINLTGITDQ 473

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK++               E N   +AHN+ FD+ F+  +      +    + I   + 
Sbjct: 474 MLKNEGLELKPALLKISKLFE-NRIAVAHNSTFDMNFLFQKFLDNKMEIPKTTFIDTLVV 532

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                   S++ L +   R GI  +  + H A  D+ +L++ +I  M   ++IN  
Sbjct: 533 SRLLFSKDSKHRLENYVGRLGIIYNSDAAHRADYDAEILANAWIPSMNLLAEININ 588


>gi|303228659|ref|ZP_07315484.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Veillonella atypica ACS-134-V-Col7a]
 gi|302516639|gb|EFL58556.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 861

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 4/163 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+E+TG D+  DRII+I A+ +         F+ F+ P     S    +L     + 
Sbjct: 495 VVYDVESTGTDTTQDRIIQIAAMRIDKDGNEIERFERFINPG---KSVGTSQLVHGFTDA 551

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
              +   S             N   + HN  +D+  ++ EL R N        + DTL I
Sbjct: 552 YLAEHGESPKVVLEAFKEFSNNRIIVGHNVNYDISILSHELARHNLGEPQFKAVYDTLDI 611

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            RR +P+  N       +Y   I+H   H A+ D      + I
Sbjct: 612 FRRFYPTLENHKLGFLSKY-FPINHTPTHNAMDDIIATGQLLI 653


>gi|327460706|gb|EGF07041.1| DNA polymerase III PolC [Streptococcus sanguinis SK1]
          Length = 1462

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +++      +  EF +F  +  +  +AHNA FDVGF+N   +R     +       ++ 
Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
                 ++        +   +  +   H + + A     LL      +       N    
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T+       +K  V + ++  +++
Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624


>gi|146284212|ref|YP_001174365.1| exonuclease [Pseudomonas stutzeri A1501]
 gi|145572417|gb|ABP81523.1| exonuclease [Pseudomonas stutzeri A1501]
 gi|327482571|gb|AEA85881.1| exonuclease [Pseudomonas stutzeri DSM 4166]
          Length = 235

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 68/177 (38%), Gaps = 5/177 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D+ETTGL  K D +I IGAV + D +   ++ F+  LC   + N    +     +
Sbjct: 39  RLVVLDLETTGLHLKRDLVIAIGAVVIEDGAIDYSQQFECTLCRQVKVNESVLIHGIAPS 98

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +      P+ + +    +       +  +A +A FD   +   L+      L+ S +   
Sbjct: 99  ELANGLPPAEALLSFMEFA----AGSIVLAFHAPFDQRMLGRALKNELGYSLENSFLDVA 154

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                    +  +  +         I    +H A  D+   +++ + ++    +I  
Sbjct: 155 DLAPMLFPEAMIHRGSLDHWLDYFNIHIPQRHNASADAMATAEIALILLNRAQRIGL 211


>gi|327400242|ref|YP_004341081.1| DNA polymerase III subunit epsilon [Archaeoglobus veneficus SNP6]
 gi|327315750|gb|AEA46366.1| DNA polymerase III, epsilon subunit [Archaeoglobus veneficus SNP6]
          Length = 196

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 71/190 (37%), Gaps = 6/190 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D+E+TGL+ K D I+ I  + ++      +  F   + P  +K   E++K HGI 
Sbjct: 8   RYSVIDVESTGLNPKKDEIVAIAVIPMVGSRIILSDYFFSLVRP--KKLKGESIKYHGID 65

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +   P F SI S       +             +    + L+   +        ++ 
Sbjct: 66  IKAVSKAPEFQSIASRLKHMLEDSIIVSYTEFDAKILKSHFSRLKIRLELDCIDISQVEH 125

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
               +     + +    + K     I     H AL D++  + ++ + +V  ++     +
Sbjct: 126 WIARKEGRAENHDMDGLIKKYSLEEIYR---HSALADAYYTACIFQRQLVKLAEYGVTLQ 182

Query: 187 TNEDRFFKEE 196
             +    +E+
Sbjct: 183 ELKRIGKREK 192


>gi|325688979|gb|EGD30987.1| DNA polymerase III PolC [Streptococcus sanguinis SK115]
          Length = 1462

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +++      +  EF +F  +  +  +AHNA FDVGF+N   +R     +       ++ 
Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
                 ++        +   +  +   H + + A     LL      +       N    
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T+       +K  V + ++  +++
Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624


>gi|324992474|gb|EGC24395.1| DNA polymerase III PolC [Streptococcus sanguinis SK405]
 gi|324995996|gb|EGC27907.1| DNA polymerase III PolC [Streptococcus sanguinis SK678]
 gi|327488780|gb|EGF20579.1| DNA polymerase III PolC [Streptococcus sanguinis SK1058]
          Length = 1462

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +++      +  EF +F  +  +  +AHNA FDVGF+N   +R     +       ++ 
Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
                 ++        +   +  +   H + + A     LL      +       N    
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T+       +K  V + ++  +++
Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624


>gi|227890751|ref|ZP_04008556.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           salivarius ATCC 11741]
 gi|227867160|gb|EEJ74581.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           salivarius ATCC 11741]
          Length = 937

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 9/186 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MI++      V D+ETTG      D+II+    + +  +K    F   + P G     E 
Sbjct: 9   MIKERI--YAVVDLETTGPKQDGSDKIIQFSC-DFVQSNKIVNHFSTLINP-GMPIPAEV 64

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            KL GI D+ ++  P F  +    +           AHN  FD  F+++EL+R     L+
Sbjct: 65  KKLTGIKDKDVRYAPYFDEVAGTIYAMLQNTTFV--AHNVNFDYSFLSSELERAGYPELE 122

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +                 L  + K   ++  H   H A  D+   +++ I +     
Sbjct: 123 LPMMDTVQLTQIIYPTLVSYRLIDVSKYLQLSHIHP--HKADSDTKATAELLINLKKRIE 180

Query: 180 QINFGF 185
                 
Sbjct: 181 TFPLIL 186


>gi|332971471|gb|EGK10424.1| ribonuclease T [Psychrobacter sp. 1501(2011)]
          Length = 268

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 67/205 (32%), Gaps = 16/205 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54
           +V D+ET G D+K D ++E+  + ++                L P           +   
Sbjct: 64  VVVDVETAGFDAKTDALLELACIPIIMDEQGKFIPGEALNAHLNPFEGANLEQRALDFTG 123

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P       I +E                   +      + HNA FD+ F+NA ++R N
Sbjct: 124 IDPNNPMRKAIAEEEQPALRRIFKELKAVRKENDCLKCILVGHNAHFDLSFLNAAIERTN 183

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +P      L        +    + +  CK  GI  S    H AL D+   ++++  
Sbjct: 184 SKNHNPFHQFSVLDTVTLSALAFGQTVLARACKAAGIEFSGTEAHSALYDTQKTAELFCH 243

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKK 198
           ++     +      +     K   +
Sbjct: 244 ILNSYPMLTNALLEDNTANEKSGVE 268


>gi|330938574|gb|EGH42148.1| exonuclease [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 237

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 67/200 (33%), Gaps = 6/200 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ET+GL+   D+++ IGAV + D +    + F+   L  + + +    +     
Sbjct: 42  RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVLIHGLAP 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +      +P       +F +F  +             +     +     +         +
Sbjct: 102 SAIAAGSEP--VEALLDFMEFVGDSPILGFHAPFDQHMLSRALKESLGYRLQHAFFDTAE 159

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
              +           L+   + +G+      +H A  D+ + +++ + +     +     
Sbjct: 160 IAPMLCEHANLRHAGLDDWTRFFGL--HAEERHHASADALVTAELALILFSHARRQQIDS 217

Query: 186 KTNEDRFFKEEKKTVPNISL 205
               +    + ++   + S 
Sbjct: 218 PLRLEEALGQWRRRRQSHSF 237


>gi|288926239|ref|ZP_06420165.1| exonuclease [Prevotella buccae D17]
 gi|315606363|ref|ZP_07881379.1| DNA polymerase III epsilon chain [Prevotella buccae ATCC 33574]
 gi|288337018|gb|EFC75378.1| exonuclease [Prevotella buccae D17]
 gi|315252054|gb|EFU32027.1| DNA polymerase III epsilon chain [Prevotella buccae ATCC 33574]
          Length = 284

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 6/198 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGLD  NDR+I++  +++       R     + P G+  +PE   L GI+D+ 
Sbjct: 10  VVFDLETTGLDLVNDRVIQLSYIKVCPDGTELRG-NEIINP-GKPIAPEITALTGISDDD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD+P+F  +     + F   +      N           L+          R+ID  +I
Sbjct: 68  VKDRPAFKELAPRLAEEFKGCDFAGFNSNHFDIPMLAEEFLRAGIDFDFGKCRLIDAQAI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          +   ++           A          Y  +M    +   G +   
Sbjct: 128 FHK----MERRNLAAAYKFYTGRKMEEDFEAHRADQDTEATYRVLMGELDKYAPGVQEEP 183

Query: 190 DRFFKEEKKTVPNISLLK 207
           DR    +   +   S   
Sbjct: 184 DRVLHNDMDELAEFSKNN 201


>gi|291614958|ref|YP_003525115.1| DNA polymerase III, subunit epsilon [Sideroxydans lithotrophicus
           ES-1]
 gi|291585070|gb|ADE12728.1| DNA polymerase III, epsilon subunit [Sideroxydans lithotrophicus
           ES-1]
          Length = 235

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 4/178 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D+ETTGL+   D +I IGAV +++       +F V L      +  E + +HGI+
Sbjct: 42  RVVVVDVETTGLNLITDTLISIGAVAVVNGRIALGDSFSVVLK-QQESSDKENILVHGIS 100

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
               +D          F ++  +     IA +  FD   I   +++          +   
Sbjct: 101 STAQRDGVDPVEALLTFLEYLGKSR--LIAFHVAFDETMIRRAMRQYLGLSFKHEWLDLA 158

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
             +         N            I   ++H AL D+   + ++   +      N  
Sbjct: 159 YVMPALNRSLMENHRVLDDWIGRFNIHIEARHNALADALATAQLFQIAISQARNKNIN 216


>gi|46198769|ref|YP_004436.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus
           HB27]
 gi|55980782|ref|YP_144079.1| DNA polymerase III subunit epsilon-like protein [Thermus
           thermophilus HB8]
 gi|46196392|gb|AAS80809.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus
           HB27]
 gi|55772195|dbj|BAD70636.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus
           HB8]
          Length = 624

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTGLD + D ++ +  V +L         F+  + P GR  SP A  +HG+T E 
Sbjct: 442 AFDLETTGLDPEQDAVVALAGVHVLGRRVLRQEVFEALVNP-GRPISPAATAVHGLTAEM 500

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           L+DKP   ++   F  F  +     +AHN  FD
Sbjct: 501 LRDKPPLEAVLPAFRAFVQD--TVLVAHNGAFD 531


>gi|254495198|ref|ZP_05108122.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
 gi|85819550|gb|EAQ40707.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
          Length = 461

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 68/178 (38%), Gaps = 7/178 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG   K  +I EI  + + D  K    F   + P  +   P    L GIT+  +
Sbjct: 4   VIDIETTGNGFKGQKITEIS-IFVFDGKKIIDEFTSLINPE-QNIPPFITNLTGITNAMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  I  +  +    ++  ++AHN  FD   I  E + +  D              
Sbjct: 62  RYAPKFHEIAKKVEE--LTRDTIFVAHNVNFDYNIIRDEFKSLGFDFKRKKLCT-VRLSR 118

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +         L ++C    I I+ R  H A  D+   ++++ +++            N
Sbjct: 119 KIMPGLRSYSLGNICIDENIPINGR--HRAKGDAEATTELFRRLIERDDSFIINSFLN 174


>gi|312872972|ref|ZP_07733032.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2062A-h1]
 gi|311091494|gb|EFQ49878.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2062A-h1]
          Length = 933

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    ++DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +            N              ++         ++  
Sbjct: 69  QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175
            IA    PS +    +          HR+   AL+ + +L  +   I+M+
Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIDKIEML 178


>gi|157150704|ref|YP_001451113.1| DNA polymerase III PolC [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075498|gb|ABV10181.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 1462

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +++      +  EF +F  +  +  +AHNA FDVGF+N   +R     +       ++ 
Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
                 ++        +   +  +   H + + A     LL      +       N    
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKYGVTNLKDL 599

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T+       +K  V + ++  +++
Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624


>gi|322494373|emb|CBZ29674.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 347

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 85/234 (36%), Gaps = 63/234 (26%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE-------------------------------LLDYS 38
           +V D+ETTG  +  D I+E+   E                               +++  
Sbjct: 108 VVVDLETTGFSATADEILEVACAELRWTPSSHTSSTGPKHTAPCAPSLGEQSVCGVIEGL 167

Query: 39  KT--NRTFQVFLCP-NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE------ 89
            T   R F  ++ P + R+ S  A  +HGIT E ++    +  + SE   +         
Sbjct: 168 WTRGGRVFHRYVRPSDPRRISAAATAVHGITWETVQHCSPWPVVASELVAYMVLVGADGP 227

Query: 90  ------------------QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTLSI 129
                             Q    +AHNA FD  F+   L+R         +     T   
Sbjct: 228 FSASAQLEAAQAGGHRAVQLPPLVAHNASFDARFLEHHLRRCGYQIFWQPQYPLTCTRQW 287

Query: 130 ARRKHPSSRNDLNSLCKRYGIT---ISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           A+  +P   N+L++LC   GI        + H AL D+ L + ++++M    ++
Sbjct: 288 AQVAYPHLANNLDALCAFLGIDGAADRAANGHDALTDATLTALLFLQMCRRWTE 341


>gi|282890349|ref|ZP_06298877.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae
          str. Hall's coccus]
 gi|281499731|gb|EFB42022.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae
          str. Hall's coccus]
          Length = 249

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 2/85 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGLD   DRIIE+              F+  + P        ++++H IT E
Sbjct: 9  FVCIDCETTGLDVHADRIIEVAVARFTFDQIL-EQFESLINPEC-PIPESSIQIHHITAE 66

Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE 93
           + DKP  + +  +  D        
Sbjct: 67 MVADKPPITQVIPQILDAVRSHTIV 91


>gi|315126562|ref|YP_004068565.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
 gi|315015076|gb|ADT68414.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
          Length = 233

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGLD+ +D I+ +G V   ++      +    + P  R  S E++ +HGIT 
Sbjct: 44  FVALDFETTGLDANSDDIVSVGLVPFNVNRIYCKESRHWVVQP-RRDLSEESIVIHGITH 102

Query: 68  EFLKDKP 74
             + + P
Sbjct: 103 SEVDEAP 109


>gi|300214468|gb|ADJ78884.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius CECT
           5713]
          Length = 929

 Score = 59.2 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 9/186 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MI++      V D+ETTG      D+II+    + +  +K    F   + P G     E 
Sbjct: 1   MIKERI--YAVVDLETTGPKQDGSDKIIQFSC-DFVQSNKIVNHFSTLINP-GMPIPAEV 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            KL GI ++ ++  P F  +    +           AHN  FD  F+++EL+R     L+
Sbjct: 57  KKLTGIKNKDVRYAPYFDEVAGTIYAMLQNTTFV--AHNVNFDYSFLSSELERAGYPELE 114

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +                 L  + K   ++  H   H A  D+   +++ I +     
Sbjct: 115 LPMMDTVQLTQIIYPTLVSYRLIDVSKYLQLSHIHP--HKADSDTKATAELLINLKKRIE 172

Query: 180 QINFGF 185
                 
Sbjct: 173 TFPLIL 178


>gi|32266846|ref|NP_860878.1| DNA polymerase III subunit epsilon [Helicobacter hepaticus ATCC
           51449]
 gi|32262898|gb|AAP77944.1| DNA polymerase III [Helicobacter hepaticus ATCC 51449]
          Length = 266

 Score = 59.2 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 5/104 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIET G   +  +IIEIGA+++      ++ F+ ++     +      +L GI    
Sbjct: 74  VFVDIETNGAKPQQCQIIEIGALKVKGGEIIDK-FESYV--YADEVPENITQLTGICQAD 130

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           +   PS   +  EF  F       ++AHN  FD GF++  L++ 
Sbjct: 131 IAYAPSIKEVLGEFRAFLGT--DVFVAHNVNFDYGFVDYHLRQC 172


>gi|323350531|ref|ZP_08086193.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
 gi|322123213|gb|EFX94898.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
          Length = 1462

 Score = 59.2 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +++      +  EF +F  +  +  +AHNA FDVGF+N   +R     +       ++ 
Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
                 ++        +   +  +   H + + A     LL      +       N    
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T+       +K  V + ++  +++
Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624


>gi|322386941|ref|ZP_08060565.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
 gi|321269223|gb|EFX52159.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
          Length = 1462

 Score = 59.2 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +++      +  EF +F  +  +  +AHNA FDVGF+N   +R     +       ++ 
Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPQITQPVIDTLEF 539

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
                 ++        +   +  +   H + + A     LL      +       N    
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T+       +K  V + ++  +++
Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624


>gi|239638049|ref|ZP_04679008.1| exonuclease [Staphylococcus warneri L37603]
 gi|239596332|gb|EEQ78870.1| exonuclease [Staphylococcus warneri L37603]
          Length = 184

 Score = 59.2 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V+++D   T  TF   + PN    S + + +HGI  E
Sbjct: 6   FVALDFET--ANGKRTSICSVGMVKVIDNQIT-ETFHTLVNPND-YFSEQNINVHGIYPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+FS +F     F ++            +V   + +   +    L          
Sbjct: 62  DVASSPNFSYVFPYMMQFIDQLPVVAHNAAFDMNVLHQSIQDIGLETPHLTYFCSYQLAK 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
              + H      +    +           H AL D+   + +  +++     +
Sbjct: 122 RTVQSHRYGLKHMMDFYQL-----DFHGHHDALNDAKACAMITYRLLKHYDDL 169


>gi|257454452|ref|ZP_05619714.1| ribonuclease T [Enhydrobacter aerosaccus SK60]
 gi|257448218|gb|EEV23199.1| ribonuclease T [Enhydrobacter aerosaccus SK60]
          Length = 242

 Score = 59.2 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 72/221 (32%), Gaps = 19/221 (8%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP--- 50
           M   N+ R    +V D+ET G + K D ++EI  + +L                + P   
Sbjct: 8   MTIANRFRNYLPVVVDVETAGFNPKTDALLEIACIPILMDDTGLFYPGEAVNAHIEPFEG 67

Query: 51  --------NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
                        +P +     I ++                          + HNA FD
Sbjct: 68  ANLEARALQFTGINPHSPMRKAIAEDEKTAIRRIFKYLKTVRQSTQCTKCILVGHNAHFD 127

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGAL 161
           + F+NA ++R N            L        +    + +  CK  G+       H AL
Sbjct: 128 LSFLNALIERTNSKNQSQFHQFSVLDTVTLSALAFGQTVLARACKLAGLEFDGNEAHSAL 187

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPN 202
            D+   ++++  ++     +     ++E +  + ++    +
Sbjct: 188 YDTQKTAELFCYILNNYPMLTPNLASDEAKDEEYDEPQDSD 228


>gi|91215241|ref|ZP_01252213.1| DNA Pol III Epsilon Chain [Psychroflexus torquis ATCC 700755]
 gi|91186846|gb|EAS73217.1| DNA Pol III Epsilon Chain [Psychroflexus torquis ATCC 700755]
          Length = 256

 Score = 59.2 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 6/171 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ETTG++   DRI+EI  +++ + +    ++   + P G     E   +HGI+DE +
Sbjct: 11  FFDLETTGINISKDRIVEISILKVFENNN-KESYTWKVNP-GIPIPKETTAIHGISDEDV 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++P F  +  +        +      N           L+      L     +D  +I 
Sbjct: 69  VNEPKFDELAPKINAMIKGCDLGGYNSNRFDIPLLAEEMLRTGIDFDLKKINAVDVQTIF 128

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +              ++         H A  D++   +V    +     +
Sbjct: 129 HK----KEKRTLEAAYKFYCDKDLTDAHSAEADTNATYEVLKSQLDRYPDL 175


>gi|262368659|ref|ZP_06061988.1| ribonuclease T [Acinetobacter johnsonii SH046]
 gi|262316337|gb|EEY97375.1| ribonuclease T [Acinetobacter johnsonii SH046]
          Length = 219

 Score = 59.2 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 66/197 (33%), Gaps = 16/197 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54
           +V D+ET G +++ D ++EI A+ ++                + P           +   
Sbjct: 23  VVVDVETAGFNAQTDALLEIAAIPIIYNEEGQFVPGPAHHAHINPFEGANLDRRSLDFIG 82

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P       + ++            +E     N  +A  + HNA FD+GF+ A + R  
Sbjct: 83  IDPFNPMRMAMAEDEKTALKRIFKAVNEVRRQQNCTHAVLVGHNAHFDLGFVQAAIARTG 142

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +P                    + +  C + GI    R  H AL D+   ++++  
Sbjct: 143 TKNQNPFHSFSVFDTVTLSAVMFGQTVLAKSCIQAGIEFDGREAHSALYDTQKTAELFCY 202

Query: 174 MMVGGSQINFGFKTNED 190
           ++   +         + 
Sbjct: 203 ILNKLAPHLLDTLVADQ 219


>gi|149011144|ref|ZP_01832449.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764780|gb|EDK71710.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP19-BS75]
          Length = 1463

 Score = 59.2 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|15902295|ref|NP_357845.1| DNA polymerase III PolC [Streptococcus pneumoniae R6]
 gi|116515846|ref|YP_815772.1| DNA polymerase III PolC [Streptococcus pneumoniae D39]
 gi|32469721|sp|Q8DRA5|DPO3_STRR6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|122279342|sp|Q04MH6|DPO3_STRP2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|15457800|gb|AAK99055.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae R6]
 gi|116076422|gb|ABJ54142.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae D39]
          Length = 1463

 Score = 59.2 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|325697436|gb|EGD39322.1| DNA polymerase III PolC [Streptococcus sanguinis SK160]
          Length = 1462

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +++      +  EF +F  +  +  +AHNA FDVGF+N   +R     +       ++ 
Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
                 ++        +   +  +   H + + A     LL      +       N    
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T+       +K  V + ++  +++
Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624


>gi|296135545|ref|YP_003642787.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
 gi|295795667|gb|ADG30457.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
          Length = 469

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 4/100 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG +   DRI E+  + +       + +   L P G++  P   +L GI D 
Sbjct: 5   YVLLDLETTGSNPVLDRITEVAVMRVEQGEVVAK-WSRLLNP-GQRIPPFIQQLTGIDDA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
            +   P+F  +  E     +   A  +AHN +FD GF+  
Sbjct: 63  MVAGAPAFGEVLPELLAVLDG--AVLVAHNVRFDHGFLKQ 100


>gi|168576299|ref|ZP_02722182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae MLV-016]
 gi|307066950|ref|YP_003875916.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae AP200]
 gi|183577861|gb|EDT98389.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae MLV-016]
 gi|306408487|gb|ADM83914.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae AP200]
          Length = 1463

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|168493969|ref|ZP_02718112.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC3059-06]
 gi|183576230|gb|EDT96758.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC3059-06]
 gi|332077575|gb|EGI88036.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA41301]
          Length = 1463

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|168484148|ref|ZP_02709100.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1873-00]
 gi|172042563|gb|EDT50609.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1873-00]
          Length = 1463

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|149006027|ref|ZP_01829756.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP18-BS74]
 gi|147762383|gb|EDK69344.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP18-BS74]
          Length = 1463

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|146328835|ref|YP_001209227.1| ribonuclease T [Dichelobacter nodosus VCS1703A]
 gi|146232305|gb|ABQ13283.1| ribonuclease T [Dichelobacter nodosus VCS1703A]
          Length = 206

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 15/185 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-----RTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G D + D ++E+ AV L+++++        TF   + P  G   +P++LK++
Sbjct: 15  VVVDVETGGFDHEKDALLEVAAV-LVNFNEAGNLAPVETFHYHVKPFEGAHLNPDSLKIN 73

Query: 64  GITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           GI                        E+    +   +  + HNA FD+GFINA   R N 
Sbjct: 74  GIDPFHPLRPALDEVTVAKQLFGAIREYQKAQSCTRSILVGHNAHFDLGFINALAARCNY 133

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                       +++       +  L  + K  G        HGA  D+ L + ++  ++
Sbjct: 134 QHNPFHPFSSLDTVSLGALAYGQTVLARIAKAAGFEYDSERAHGAKYDTELTAQIFCHII 193

Query: 176 VGGSQ 180
              S+
Sbjct: 194 NTWSE 198


>gi|15900208|ref|NP_344812.1| DNA polymerase III PolC [Streptococcus pneumoniae TIGR4]
 gi|111658314|ref|ZP_01409003.1| hypothetical protein SpneT_02000504 [Streptococcus pneumoniae
           TIGR4]
 gi|21263563|sp|Q97SQ2|DPO3_STRPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14971745|gb|AAK74452.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae TIGR4]
          Length = 1463

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|327468385|gb|EGF13870.1| DNA polymerase III PolC [Streptococcus sanguinis SK330]
          Length = 1462

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +++      +  EF +F  +  +  +AHNA FDVGF+N   +R     +       ++ 
Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
                 ++        +   +  +   H + + A     LL      +       N    
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T+       +K  V + ++  +++
Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624


>gi|319950859|ref|ZP_08024742.1| DNA polymerase III [Dietzia cinnamea P4]
 gi|319435472|gb|EFV90709.1| DNA polymerase III [Dietzia cinnamea P4]
          Length = 313

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 7/170 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ET+G+    DR++ + AV + D  +    F   L P      P  + +HG+T  
Sbjct: 4   WVVVDVETSGMTPAVDRVLSVAAVVIGDDGEVVEEFATLLNPG---VDPGPVHVHGLTPA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  KP FS + +E     + +     AHNA FD  F+ AE +R    P     +     
Sbjct: 61  LLAGKPRFSDVAAELGRVLDGRTVV--AHNAAFDASFLAAEARRAGLAPPLERFVCTLDF 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             R    ++   L++L   +G+       H A  D+  L+ V+  ++   
Sbjct: 119 AGRLHLSTADLKLSTLAAHFGVRQRAA--HDAHDDALALAGVFAGLLEVA 166


>gi|307126490|ref|YP_003878521.1| DNA polymerase III subunit alpha, Gram-positive type [Streptococcus
           pneumoniae 670-6B]
 gi|306483552|gb|ADM90421.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae 670-6B]
 gi|332076720|gb|EGI87182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA17545]
          Length = 1463

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|262044634|ref|ZP_06017689.1| ribonuclease T [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259038035|gb|EEW39251.1| ribonuclease T [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 215

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+  ++ ++     + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDEFLK--------DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I     +           +   +  +     +   A  +AHNA FD  F     +R    
Sbjct: 80  INPHDPQLGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACIAAGMPFDGAQAHSALYDTEQTAQLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|225860309|ref|YP_002741818.1| DNA polymerase III PolC [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229634|ref|ZP_06963315.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|225727760|gb|ACO23611.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae Taiwan19F-14]
          Length = 1463

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|194397447|ref|YP_002036972.1| DNA polymerase III PolC [Streptococcus pneumoniae G54]
 gi|194357114|gb|ACF55562.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae G54]
          Length = 1463

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|168209034|ref|ZP_02634659.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|170712869|gb|EDT25051.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens B str. ATCC 3626]
          Length = 870

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 76/214 (35%), Gaps = 11/214 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             IVFD+E+TG+D   D II+I A++L    +    F+ FL     K   +         
Sbjct: 503 NIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLK---NKKPVKDSYYVHGFS 559

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +                +++  + HN ++D+  + +EL+R N          DTL
Sbjct: 560 DEMLQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYDTL 619

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-------IKMMVGGSQ 180
            I RR +P + N       +      H+  H A+ D     ++        IK       
Sbjct: 620 DIYRRFYPGNINYKLENLSKV-YDTKHKPSHDAMDDIIATGELLVRAINEKIKETSMERM 678

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214
                         ++   +  I+  KR   L  
Sbjct: 679 ALMSKHLKAFTAISKKLNELFQIAESKRPYELVV 712


>gi|148988015|ref|ZP_01819478.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP6-BS73]
 gi|147926479|gb|EDK77552.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP6-BS73]
          Length = 1463

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|332653929|ref|ZP_08419673.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae
           bacterium D16]
 gi|332517015|gb|EGJ46620.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae
           bacterium D16]
          Length = 236

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 61/170 (35%), Gaps = 8/170 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLC-PNGRKNSPEALKLHG 64
           +VFD ET+GLD  ND+IIE+ A+ +        +       F+  P G       + L G
Sbjct: 15  VVFDTETSGLDFDNDQIIELAALRVERTATGGLRIAGKMDTFIKLPEGETLPENIVSLTG 74

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITDE L+ +    +  +       +     +  +           L R  K         
Sbjct: 75  ITDERLQTEGVQPAKAASQIAKLMQNGPTLMIAHNAQFDACFLRGLLRGQKVGRIDWLDS 134

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            T+   RR +P    +        G     ++ H A+ D   L +V   M
Sbjct: 135 LTVYKDRRAYPHKLANAIIAYDLTGK---VQNSHRAIDDVLALFEVLKAM 181


>gi|298256053|ref|ZP_06979639.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502091|ref|YP_003724031.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|298237686|gb|ADI68817.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
          Length = 1463

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|182683255|ref|YP_001835002.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|303255179|ref|ZP_07341253.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
 gi|182628589|gb|ACB89537.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|301801215|emb|CBW33889.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV200]
 gi|302597812|gb|EFL64884.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
          Length = 1463

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 7/211 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185
                    R+ L  L KR+G+     H + + A     LL     ++       +    
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +       +K  + + ++  +++     I
Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631


>gi|104773929|ref|YP_618909.1| hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423010|emb|CAI97696.1| Hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 290

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 19/185 (10%)

Query: 3   RKNKMR----------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
           +  KMR           +  DIETTGL+++ D+I+ IGAV+          F   +    
Sbjct: 110 KAEKMRASAAAAKPKGFVAVDIETTGLNTETDQILSIGAVK-----HDGTEFYRLIK-QD 163

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
                + ++L GIT E L  +        E    F       + +N +FD  F+N + ++
Sbjct: 164 IDVPKQIVELTGITSEMLSKEGVPLQDALEELTDFVGNVPI-VGYNFRFDSAFLNRDYRK 222

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                L          + R++       L ++   YGI       H A+ D+    ++ +
Sbjct: 223 CGMQELKNEIKDLLPVVKRKEKFLDNYKLQTVLSNYGIENKVP--HNAVSDARATKELAM 280

Query: 173 KMMVG 177
           K++  
Sbjct: 281 KLIKN 285


>gi|221135181|ref|ZP_03561484.1| ribonuclease T [Glaciecola sp. HTCC2999]
          Length = 212

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G +++ D ++EI AV +          ++     + P  G    P A++ +G
Sbjct: 17  VIIDVETAGFNAQTDALLEIAAVTVRMDEAGMLHPDQEIHYHINPFEGANIEPAAIEFNG 76

Query: 65  IT--------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I          +  +     S   S+     N Q +  +AHNA FD+ F+NA L R N  
Sbjct: 77  IKVDCALRGAVDETEAMKGLSKAISKLQKAANCQRSVIVAHNASFDMSFVNAALARTNVK 136

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + +       +  L   C+   I    +  HGAL D+   ++++  MM 
Sbjct: 137 RSPFHPFVSFDTTSLAALTLGQTVLVKACEAANIAFDQKQAHGALYDAQRTAELFCFMMN 196

Query: 177 GGSQIN 182
               + 
Sbjct: 197 RYQSLG 202


>gi|237654602|ref|YP_002890916.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237625849|gb|ACR02539.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 502

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 8/163 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             DIETTG  ++ + I EIG V++ +     R +   + P  R       +L GI D+ +
Sbjct: 14  FVDIETTGGPAQRESITEIGIVQVDEDGV--REWSTLVRPASR-IPETIQRLTGIDDDMV 70

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P F  I  E +D  +     ++AHNA+FD G + A  +R   D          LS  
Sbjct: 71  ADAPRFEDIADEVFDRLDG--RLFVAHNARFDHGHLRAAFRRAGLDMRPQVLCTVKLS-R 127

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           R      R+ L+ L +R+G+      +H AL D+ LL   + K
Sbjct: 128 RLFPDHRRHGLDHLIERHGLA--VADRHRALGDARLLWQFWQK 168


>gi|189460117|ref|ZP_03008902.1| hypothetical protein BACCOP_00753 [Bacteroides coprocola DSM 17136]
 gi|189433159|gb|EDV02144.1| hypothetical protein BACCOP_00753 [Bacteroides coprocola DSM 17136]
          Length = 258

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 71/200 (35%), Gaps = 12/200 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +   DRI+EI  +++  + ++ ++T +  + P        +  +HGI DE
Sbjct: 10  VFFDLETTGTNINTDRIVEICYLKVYPNGNEESKTMR--VNPEMH-IPEASTAIHGIHDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  I  +        +      N       +   L+      L   + ID   
Sbjct: 67  DVADCPTFKEIAKDIARDLEGADIAGFNSNRFDVPVLVEEFLRAGIDIDLTKRKFIDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I  +          S   ++    +    H A  D+    +V    +            N
Sbjct: 127 IYHK----LEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLKAQLDHYP----DVLEN 178

Query: 189 EDRFFKEEKKTVPNISLLKR 208
           + +F  E      N+    R
Sbjct: 179 DIKFLSEYSTYSKNVDFAGR 198


>gi|307705682|ref|ZP_07642529.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK597]
 gi|307620762|gb|EFN99851.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK597]
          Length = 1463

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 7/211 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185
                    R+ L  L KR+G+     H + + A     LL     ++      I+    
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVIDLARL 600

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +       +K  + + ++  +++     I
Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631


>gi|307710886|ref|ZP_07647313.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK321]
 gi|307617331|gb|EFN96504.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK321]
          Length = 1463

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPRISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|238749424|ref|ZP_04610929.1| Ribonuclease T [Yersinia rohdei ATCC 43380]
 gi|238712079|gb|EEQ04292.1| Ribonuclease T [Yersinia rohdei ATCC 43380]
          Length = 226

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L      +   ++T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAQTDALLEIAAVTLRMDKDGWLLPDQTLHFHVEPFEGANLQPEALAFNG 90

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +  +   +         A  +AHNA FD  F+ A  +R +  
Sbjct: 91  IDPTNPLRGAVSEYNALHAIFTAIRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASLK 150

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D+   + ++ +++ 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLTAGIPFDSSQAHSALYDTMQTATLFCELVN 210

Query: 177 GGSQIN 182
              ++ 
Sbjct: 211 RWKKLG 216


>gi|225858122|ref|YP_002739632.1| DNA polymerase III PolC [Streptococcus pneumoniae 70585]
 gi|225720766|gb|ACO16620.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae 70585]
          Length = 1463

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 7/211 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185
                    R+ L  L KR+G+     H + + A     LL     ++       +    
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +       +K  + + ++  +++     I
Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631


>gi|332204293|gb|EGJ18358.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA47901]
          Length = 1463

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 7/211 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185
                    R+ L  L KR+G+     H + + A     LL     ++       +    
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +       +K  + + ++  +++     I
Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631


>gi|148656137|ref|YP_001276342.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1]
 gi|148568247|gb|ABQ90392.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1]
          Length = 233

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLC-PNGRKNSPEALKLHGITDE 68
           V D+ETTGL+ + D ++ IG V++ D     ++ +   +  P+    +PEA+++HG+  +
Sbjct: 40  VIDVETTGLNPRRDALLAIGLVDIDDGRIRMDQRWYTLVRPPDDAPVNPEAIRVHGLLPQ 99

Query: 69  FLKDKPS 75
            ++  P 
Sbjct: 100 DVEQAPP 106


>gi|301793541|emb|CBW35916.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV104]
          Length = 1463

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 7/211 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185
                    R+ L  L KR+G+     H + + A     LL     ++       +    
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +       +K  + + ++  +++     I
Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631


>gi|149372989|ref|ZP_01891945.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
 gi|149354349|gb|EDM42916.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
          Length = 472

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 77/201 (38%), Gaps = 8/201 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG      R+ EI  + + +       +   + P           L GITD+ +
Sbjct: 10  VIDVETTGG-VGQGRMTEICIITVENMEIV-DVWSSLINPE-IYIPQHITALTGITDQMV 66

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P F  + +   +    ++A ++AHN  FD GF+  E   I             LS  
Sbjct: 67  TDAPRFCDVAAIIEE--KTRDAIFVAHNVNFDYGFLKKEFDLIGASFSRKKLCTVRLSRK 124

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
                     L+ LC+  GI+      H A  D+   + ++++++   S  NF    N  
Sbjct: 125 LIPG-LPSYSLSKLCRSIGIS--LLDAHRAEADTRATTTLFLQLLEKDSVANFEVFLNFL 181

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
                E    P+I+    ++ 
Sbjct: 182 NKSSREATLPPHINTEDFNRL 202


>gi|295136252|ref|YP_003586928.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87]
 gi|294984267|gb|ADF54732.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87]
          Length = 1462

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 72/242 (29%), Gaps = 23/242 (9%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R I+I      +           + P G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPLTDSDNWPRCIQIAWQLHDEMGNLIEHQDYLVRPEGFDIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-- 116
           A ++HGI+ +  +++        E ++    +    +  N  FDV  + AEL R   D  
Sbjct: 62  AERVHGISTDLAREEGISLEEMLEKFNEALGKTKFIVGQNLGFDVNIMGAELHRAGMDSQ 121

Query: 117 -------PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                          +   I   +    +    +    Y         H A  D    + 
Sbjct: 122 LLELPVLDTCTETTAEMCRIPGGRGGKFKLPTLTELHEYLFDEPFGEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
            +++++   S            F    +        +        + ++       K ++
Sbjct: 182 CFLELVRKRSYSAEELNAAPGYFEDYIEANPEPFQPIGLKHINLKKASE----AIRKRLE 237

Query: 230 TL 231
            L
Sbjct: 238 KL 239


>gi|255014610|ref|ZP_05286736.1| putative exonuclease/DNA polymerase III epsilon c [Bacteroides sp.
           2_1_7]
 gi|293373643|ref|ZP_06619990.1| exonuclease [Bacteroides ovatus SD CMC 3f]
 gi|292631298|gb|EFF49929.1| exonuclease [Bacteroides ovatus SD CMC 3f]
          Length = 163

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 65/170 (38%), Gaps = 8/170 (4%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+     D ET   +++   +  +G V + D   T  TF   + P     +    ++HG+
Sbjct: 1   MKDFAAIDFET--ANNQRSSVCSVGIVIVRDGEIT-DTFYSLINPEPNYYNYWCSQVHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T +   + P F  ++ +            +AHN  FD G + A  +    D         
Sbjct: 58  TRKDTDNAPVFPEVWRQIEPLIEG--LPLVAHNRPFDEGCLKAVFRVYQMDYPCYEFYDT 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +  R       + L+++ +  G     ++ H AL D+   + +  +++
Sbjct: 116 LSASRRALPCLPNHQLHTVAEACG--YQLKNHHHALADAEACAWIAREIL 163


>gi|239928032|ref|ZP_04684985.1| DNA polymerase III [Streptomyces ghanaensis ATCC 14672]
 gi|291436367|ref|ZP_06575757.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291339262|gb|EFE66218.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 631

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 9/175 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+ET+GL ++ DR++ +  + +  D  +T   F   L P      P  +++HG+T E L
Sbjct: 23  VDVETSGLMARRDRVLSVAVITIGPDGEQTGE-FSTLLNPG---CDPGPVEVHGLTVERL 78

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P+F  +               +AHNA+FD  F+  E  R         R+       
Sbjct: 79  QGAPTFDQVAGRIGAMLQG--RVLVAHNAQFDYDFLAHEFARARMWLPVSQRLCTLALNR 136

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +   P+    L +L   YG++      H AL D+ +L+ +    +   ++++   
Sbjct: 137 QVDPPTDDMKLGTLAAHYGVSRQRA--HDALDDTRVLAGILRASLREAARLDLPL 189


>gi|146308744|ref|YP_001189209.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
 gi|145576945|gb|ABP86477.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
          Length = 199

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 7/168 (4%)

Query: 7   MRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M  I V D ETTG+     R  EIG   + D    +R +Q  +  +G    P   +L GI
Sbjct: 1   MESIAVIDFETTGVSPSQARATEIGVAIIEDGRIVDR-YQSLMN-SGAWVPPFIEQLTGI 58

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLDPSRI 123
           ++  L+  P    + +E  DF  E     +AHNA FD  F +AEL   R  +       +
Sbjct: 59  SNAMLRKAPPSEQVMNEVADFIGE--RPLLAHNASFDQKFWDAELARVRRRRSQPFACSL 116

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           + +  +          +LN+         +HR+   A + ++L   ++
Sbjct: 117 LLSRRLLPEAPSHKLGNLNAWAGLPDTGRAHRALADAEMAANLTLHLF 164


>gi|322377559|ref|ZP_08052049.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M334]
 gi|321281324|gb|EFX58334.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M334]
          Length = 1463

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185
                    R+ L  L KR+G+     H + + A     LL     ++       +    
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +       +K  + + ++  +++     I
Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631


>gi|307707703|ref|ZP_07644182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis NCTC 12261]
 gi|307616201|gb|EFN95395.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis NCTC 12261]
          Length = 1463

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|260902236|ref|ZP_05910631.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308110524|gb|EFO48064.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
          Length = 236

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 4/167 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTG+D++ D+I+ IG V+L LD      + + ++C         A        
Sbjct: 52  FVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYICHGQFIKPETAQINGLTPQ 111

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +  K  P      +   +    +         +          +   +D          +
Sbjct: 112 DLAKGLP-LDEGMNRLLERITGKVVLAHGCCIEKAFIHAYFSSRYQVEDFPAYFIDTLQI 170

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYI 172
                    S    +                 H A  D+   +++++
Sbjct: 171 EKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAELFL 217


>gi|256828365|ref|YP_003157093.1| DNA polymerase III subunit epsilon [Desulfomicrobium baculatum DSM
           4028]
 gi|256577541|gb|ACU88677.1| DNA polymerase III, epsilon subunit [Desulfomicrobium baculatum DSM
           4028]
          Length = 244

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 13/174 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D E TGL ++ + I+ IGAV +   +     +F V + P        +  +H IT E 
Sbjct: 48  VLDTELTGLSARREEIVSIGAVRVRGLAIVPGESFSVLVRP-SIPLPKTSTLIHRITPEA 106

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR---IIDT 126
           +   P  + +  E  +F        + H+   D+ F+N   ++ +  PL       +   
Sbjct: 107 IAQAPPLAEVLPELIEFCKG--TLIVGHHVGLDMSFLNRACRKNHGQPLANPCLDTMRMA 164

Query: 127 LSIARRKHPSSRNDLNSLCKR------YGITISHRSKHGALLDSHLLSDVYIKM 174
           +    ++ PS     N           +   +   + H AL D+   + ++I +
Sbjct: 165 MLWREKRTPSHYEQFNLSISYVLTDLAHEFDLPRFTAHEALGDALQTAYLFIYL 218


>gi|221231173|ref|YP_002510325.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
 gi|220673633|emb|CAR68120.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
          Length = 1463

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|329942403|ref|ZP_08291213.1| exonuclease, DNA polymerase III, epsilon subunit family domain
          protein [Chlamydophila psittaci Cal10]
 gi|332287044|ref|YP_004421945.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
 gi|313847640|emb|CBY16628.1| putative DNA polymerase III epsilon chain [Chlamydophila psittaci
          RD1]
 gi|325507354|gb|ADZ18992.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
 gi|328815313|gb|EGF85301.1| exonuclease, DNA polymerase III, epsilon subunit family domain
          protein [Chlamydophila psittaci Cal10]
 gi|328914277|gb|AEB55110.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC]
          Length = 249

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D E TGLD K DRIIE  A+          + +  + P+ R  S E+ ++H I+D 
Sbjct: 9  FVCLDCEMTGLDVKKDRIIEFAAIRFTFDRVI-DSMETLINPD-RVISAESQRIHHISDA 66

Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97
           LKD+P  + +F +   F  E +      
Sbjct: 67 MLKDQPRIAEVFPKIKSFLKEGDYIVGHS 95


>gi|309807268|ref|ZP_07701238.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166328|gb|EFO68537.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
          Length = 233

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    ++DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +            N              ++         ++  
Sbjct: 69  QEAAKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFDGKAIDTVELA 128

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175
            IA    PS +    +          HR+   AL+ + +L  +   I+M+
Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIDKIEML 178


>gi|306830212|ref|ZP_07463396.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
 gi|304427738|gb|EFM30834.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
          Length = 1463

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185
                    R+ L  L KR+G+     H + + A     LL     ++       +    
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +       +K  + + ++  +++     I
Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631


>gi|169833032|ref|YP_001693801.1| DNA polymerase III PolC [Streptococcus pneumoniae Hungary19A-6]
 gi|168995534|gb|ACA36146.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae Hungary19A-6]
          Length = 1463

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185
                    R+ L  L KR+G+     H + + A     LL     ++       +    
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +       +K  + + ++  +++     I
Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631


>gi|295133359|ref|YP_003584035.1| exonuclease domain-containing protein [Zunongwangia profunda
           SM-A87]
 gi|294981374|gb|ADF51839.1| exonuclease domain-containing protein [Zunongwangia profunda
           SM-A87]
          Length = 475

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 7/171 (4%)

Query: 7   MRKI---VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           M+++   + DIETTG   K ++I EI  V ++   +    +   + P G +       L 
Sbjct: 1   MKEVKFAIIDIETTGGGIKGNKITEI-CVLVVQNGEVINEYTSLVNP-GTEIPLYIETLT 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I D+ L D P FS I S+  +    ++  ++AHN  FD   I AE + +N         
Sbjct: 59  NINDKMLVDAPKFSEIASKIQE--ITRDCIFVAHNVNFDYNIIKAEFESLNLSFQRKRLC 116

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              L+        S +  N          +    +G    +  L   +I +
Sbjct: 117 TVRLAKKLIPGLFSYSLGNLCTSINIPHDNKHRAYGDCEATVTLFKRFIDL 167


>gi|218514224|ref|ZP_03511064.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3]
          Length = 312

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 63/187 (33%), Gaps = 15/187 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+ ++D IIEIGAV     D         ++  L    R    E  +L GI
Sbjct: 61  VVLDTETTGLNHRSDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIPREVTRLTGI 120

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD  ++ +     I         E     IAHNA FD  F  A                 
Sbjct: 121 TDAMVEGQ----VIDIRSLSDLIEPADLIIAHNAGFDRPFCEAFSPLFTGKAW------- 169

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             S++     +   +   L    G        H A+ D H L ++  +    G       
Sbjct: 170 ACSVSEIDWSARGFEGTKLGYLVGQAGYFHEGHRAVDDCHALLEILDRQQGEGESPFAEL 229

Query: 186 KTNEDRF 192
                R 
Sbjct: 230 YRASQRS 236


>gi|319901725|ref|YP_004161453.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
           P 36-108]
 gi|319416756|gb|ADV43867.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
           P 36-108]
          Length = 256

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 8/173 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +  +DRI+EI  +++  + ++  +T  + + P       EA  +HGI DE
Sbjct: 10  VFFDLETTGTNINSDRIVEICYLKVYPNGNEEAKT--MRINPEMH-IPAEASAVHGIYDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+F  +     +     +      N           L+      +   + +D   
Sbjct: 67  DVAKCPTFKEVARNIANDIEGSDLAGFNSNRFDIPVLAEEFLRAGVDIDMSRRKFVDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           I  +          S   ++    +    H A  D+    +V +  +     +
Sbjct: 127 IFHK----MEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLMAQLDRYEDL 175


>gi|116513938|ref|YP_812844.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093253|gb|ABJ58406.1| 3'-5' exonuclease with to CRISPR-associated protein from COG1343
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 290

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 9/173 (5%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            + R +  DIETTGL++++D+I+ IGAV+          F   +         + ++L G
Sbjct: 122 KQKRFVAVDIETTGLNTESDQILSIGAVK-----HDGIEFYRLIK-QDIDVPKQIVELTG 175

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT E L  +        E    F       + +N +FD  F+N + ++     L      
Sbjct: 176 ITSEMLSKEGVPLQDALEELTDFVGNVPI-VGYNFRFDSVFLNRDYRKCGMQELKNEIKD 234

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
               + RR+       L ++   YGI       H A+ D+    ++ +K++  
Sbjct: 235 LLPVVKRREKFLDNYKLQTVLSNYGIENKVP--HNAVSDARATKELAMKLIKN 285


>gi|238853316|ref|ZP_04643700.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 202-4]
 gi|300362992|ref|ZP_07059162.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           JV-V03]
 gi|238834110|gb|EEQ26363.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 202-4]
 gi|300353042|gb|EFJ68920.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           JV-V03]
          Length = 320

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 53/169 (31%), Gaps = 3/169 (1%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ETTGL    DRI E+G +++        TF   +        P  +      DE   
Sbjct: 36  IDVETTGLSPYRDRITEMGGLKVRHGEVVA-TFSELVKFPDNNKVPAFITKLNGIDEAAI 94

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           ++       +         +   + +N  FD+ F+    ++ +   L+   +        
Sbjct: 95  EEKGLPVQEAIKKYREFIGSDPIVGYNVNFDLNFVYDLAEKYHLTVLNNDYVDVYRLARS 154

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                  N L     R  I      +H  L D      V+ +      Q
Sbjct: 155 FYPQERHNRLLDCMHRMNIA--ENQEHRGLDDCLDTKKVFDEFHKLFKQ 201


>gi|322375786|ref|ZP_08050297.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C300]
 gi|321279054|gb|EFX56096.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C300]
          Length = 1463

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F   +N   +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFC--KNTVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|293364694|ref|ZP_06611411.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307702942|ref|ZP_07639889.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus oralis ATCC 35037]
 gi|291316144|gb|EFE56580.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307623335|gb|EFO02325.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus oralis ATCC 35037]
          Length = 1463

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|89072943|ref|ZP_01159490.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
 gi|89051161|gb|EAR56617.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
          Length = 249

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL++  D II +G V   ++     ++    + P  +    +++ +HGIT 
Sbjct: 59  FVALDFETTGLNANKDDIISVGLVPFNINRIFCKQSQHWVVKPKAK-LDEDSVIIHGITH 117

Query: 68  EFLKDKPSFSS 78
             ++  P    
Sbjct: 118 SDVQTAPDIRR 128


>gi|149017968|ref|ZP_01834427.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931532|gb|EDK82510.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP23-BS72]
          Length = 1463

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|328944876|gb|EGG39036.1| DNA polymerase III PolC [Streptococcus sanguinis SK1087]
          Length = 1462

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++      +  EF +F  +  +  +AHNA FDVGF+N   +R     +    I     
Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEH--HHMANYDAEATGRLL 580


>gi|322388734|ref|ZP_08062331.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
 gi|321140353|gb|EFX35861.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
          Length = 1464

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 426 YVVFDVETTGLSAIYNDLIQVAASKMYKGNIIAE-FDEFINP-GHPLSAFTTELTGITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 484 HVKNAKPLVQVLKEFQEFCKD--TVLVAHNASFDVGFMNANYERHGLPKITQPVIDTLEF 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 582


>gi|307131423|ref|YP_003883439.1| ribonuclease T (RNase T) [Dickeya dadantii 3937]
 gi|306528952|gb|ADM98882.1| ribonuclease T (RNase T) [Dickeya dadantii 3937]
          Length = 225

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L      + + + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDETLHFHIEPFEGAILRPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +     N      +AHNA FD  F+ A  +R    
Sbjct: 80  IDPANPLRGAVSEYEALHEIFKAVRKGIKDLNCNRGIIVAHNATFDHSFLMAAAERCGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C    I       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACIAAEIPFDASQAHSALYDTERTAQLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRMG 205


>gi|303259383|ref|ZP_07345360.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|303261138|ref|ZP_07347087.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|303263466|ref|ZP_07349389.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
 gi|303265758|ref|ZP_07351656.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|303267811|ref|ZP_07353613.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302637975|gb|EFL68461.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|302639317|gb|EFL69775.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|302642507|gb|EFL72852.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302644666|gb|EFL74915.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|302647239|gb|EFL77463.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
          Length = 1463

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|270292055|ref|ZP_06198270.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M143]
 gi|270279583|gb|EFA25425.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M143]
          Length = 1463

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|262283487|ref|ZP_06061253.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
 gi|262260978|gb|EEY79678.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
          Length = 1462

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 84/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +++  S   +  EF +F  +  +  +AHNA FDVGF+N   +R     +       ++ 
Sbjct: 482 HVRNAKSLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
                 ++        +   +  +   H + + A     LL      +       N    
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T+       +K  V + ++  +++
Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624


>gi|255531786|ref|YP_003092158.1| exonuclease RNase T and DNA polymerase III [Pedobacter heparinus
           DSM 2366]
 gi|255344770|gb|ACU04096.1| Exonuclease RNase T and DNA polymerase III [Pedobacter heparinus
           DSM 2366]
          Length = 328

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 75/201 (37%), Gaps = 9/201 (4%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEA 59
           ++ N  R + F D+ETTG++   DRI+EI  ++ + D S+  +T +  + P        A
Sbjct: 1   MKLNLKRPLAFFDLETTGVNVGADRIVEIAILKAMPDGSELIKTMR--INPE-MPIPLYA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGI DE + ++P F  + +E  DF  + +      N       +   L+      + 
Sbjct: 58  SLIHGIYDEHIANEPIFKEVATELADFIGDADLAGYNSNRFDIPVLLEEFLRAGVDFDMS 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             + +D  +I  +              ++       + H A  D      V +  +    
Sbjct: 118 DRKFVDVQNIFHQ----MEQRTLRAAYKFYCNKDIINAHSAEADITATYQVLLAQIERYK 173

Query: 180 QINFGFKTNEDRFFKEEKKTV 200
            I+F  K        +     
Sbjct: 174 DIDFEDKQGNISRPVQNDVEA 194


>gi|227536554|ref|ZP_03966603.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243631|gb|EEI93646.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 316

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 6/181 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ETTG++   DRI+EI  ++++            + P G     E+   HGI DE +
Sbjct: 11  FFDLETTGVNIPLDRIVEISILKVMPDGN-KEVLTRRINP-GMPIPAESSMFHGIYDEDV 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD PSF  +  E  DF  + +      N       +   L+      L+    +D  +I 
Sbjct: 69  KDLPSFKELGQEIADFIGDADLAGYNSNKFDVPMLMEEFLRANVDFSLEGRNFVDVQNIF 128

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
            +              ++       + H A  D     +V    +     + +  K    
Sbjct: 129 HQ----MEQRTLKAAYKFYCDQDLNNAHTAEADVTATYEVLKAQLSRYEDVVYEDKHGNK 184

Query: 191 R 191
            
Sbjct: 185 S 185


>gi|307297316|ref|ZP_07577122.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium
          mesG1.Ag.4.2]
 gi|306916576|gb|EFN46958.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium
          mesG1.Ag.4.2]
          Length = 182

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 7  MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNG 52
          M  +V D ETTG++  +  ++IE+  V + ++    +  F   + P  
Sbjct: 1  MEFVVIDTETTGMNPYRGAKLIEVAGVRVKNWELCRDDFFDSLIDPEC 48


>gi|301300766|ref|ZP_07206950.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851616|gb|EFK79316.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 929

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 9/186 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MI++      V D+ETTG      D+II+    + +  +K    F   + P G     E 
Sbjct: 1   MIKERI--YAVVDLETTGPKQDGSDKIIQFSC-DFVQSNKIVNHFSTLINP-GMPIPVEV 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            KL GI D+ ++  P F  +    +           AHN  FD  F+++EL+R     L+
Sbjct: 57  KKLTGIKDKDVRYAPYFDEVAGTIYAMLQNTTFV--AHNVNFDYSFLSSELERAGYPELE 114

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +                 L  + K   ++  H   H A  D+   +++ I +     
Sbjct: 115 LPMMDTVQLTQIIYPTLVSYRLIDISKYLQLSHIHP--HKADSDTKATAELLINLKKRIE 172

Query: 180 QINFGF 185
                 
Sbjct: 173 TFPLIL 178


>gi|168179984|ref|ZP_02614648.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum NCTC 2916]
 gi|182669095|gb|EDT81071.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum NCTC 2916]
          Length = 855

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 4/176 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +VFD+E+TG+++  D I++I  +++ +  +   +FQ FL P         +       
Sbjct: 494 NVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLTPKKSVGDSYLVH-GFSDQ 552

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              ++  +   +  +F +F  +     + HN  FD+  +N+EL+R++ +        DTL
Sbjct: 553 FLKENGENKKVVLKDFLEFIKD--TVIVGHNVAFDISILNSELERLSLEKASFKTYYDTL 610

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            IARR +PS  N       +       +S H A+ D     DV + M+    +   
Sbjct: 611 DIARRFYPSLTNHKLETLSKL-FNTETKSSHDAMDDILATKDVLMAMLKEKVKPTI 665


>gi|149001610|ref|ZP_01826583.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
 gi|147760068|gb|EDK67057.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
          Length = 1113

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNAAFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|315611914|ref|ZP_07886833.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
 gi|315316092|gb|EFU64125.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
          Length = 1463

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|328469916|gb|EGF40827.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 10329]
          Length = 236

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 4/167 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTG+D++ D+I+ IG V+L LD      + + ++C         A        
Sbjct: 52  FVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYICHGQFIKPETAQINGLTPQ 111

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +  K  P      +   +    +         +          +   +D          +
Sbjct: 112 DLAKGLP-LDEGMNRLLERITGKVVLAHGCCIEKAFIHAYFSSRYQVEDFPAYFVDTLQI 170

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYI 172
                    S    +                 H A  D+   +++++
Sbjct: 171 EKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAELFL 217


>gi|257483040|ref|ZP_05637081.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289624800|ref|ZP_06457754.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289650623|ref|ZP_06481966.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298489203|ref|ZP_07007222.1| Exonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298156285|gb|EFH97386.1| Exonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330871170|gb|EGH05879.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330891299|gb|EGH23960.1| exonuclease [Pseudomonas syringae pv. mori str. 301020]
 gi|331011724|gb|EGH91780.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 237

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 68/200 (34%), Gaps = 6/200 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ET+GL+   D+++ IGAV + D +    + F+   L  + + +    +     
Sbjct: 42  RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVLIHGLAP 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +      +P+ + +            +  +  +A FD   ++  L+      L       
Sbjct: 102 SAIAAGSEPAEALLDFME----FVGESPILGFHAPFDQHMLSRALKESLDYRLRHPFFDA 157

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     ++              +    +H A  D+ + +++ + +     +     
Sbjct: 158 AEIAPMLCEQANLRHAGLDDWTQFFGLHAEERHNASADALVTAELALILFSHARRQQIDS 217

Query: 186 KTNEDRFFKEEKKTVPNISL 205
               +    + ++   + S 
Sbjct: 218 PRLLEERLGQWRRRKQSHSF 237


>gi|255038895|ref|YP_003089516.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
           18053]
 gi|254951651|gb|ACT96351.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
           18053]
          Length = 174

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 65/178 (36%), Gaps = 8/178 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG      RI EI AV   D ++    F   + P      P   +L GI +E
Sbjct: 2   YAIVDIETTGGG-GTSRITEI-AVFRHDGARIVDFFHSLINPE-IYIPPFITRLTGIDNE 58

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P+F  +         +      AHNAKFD GFI    +          R +    
Sbjct: 59  MVKDAPTFYEVQDAVRAMTRDAWFV--AHNAKFDYGFIK---REFGALDEYFQRDLLCTV 113

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
              RK        +       + I   ++H A  D+     ++ K+++   Q      
Sbjct: 114 QLSRKIFPGLKSYSLGNLCESLEIMIENRHRAHGDAEATVRLFEKLLLHDRQKLIPMD 171


>gi|148983680|ref|ZP_01816999.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP3-BS71]
 gi|147923827|gb|EDK74939.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP3-BS71]
 gi|301799415|emb|CBW31952.1| DNA polymerase III PolC-type [Streptococcus pneumoniae OXC141]
          Length = 1463

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185
                    R+ L  L KR+G+     H + + A     LL     ++       +    
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +       +K  + + ++  +++     I
Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631


>gi|126695985|ref|YP_001090871.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9301]
 gi|126543028|gb|ABO17270.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9301]
          Length = 259

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 70/229 (30%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + ++ D ETTGLD   D +IEIG +          +  +F   +  N  +          
Sbjct: 37  KILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNNKAEYVNGISAEVT 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
              +  +D  +F     +  DF        +AHN +FD  +               S   
Sbjct: 97  NISQPWEDGLNFFLKLVDSSDFI-------VAHNVEFDKKWFGKGRLPKLNKKWICSLED 149

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVGGSQIN 182
              S  +           +L     +   HR+       S +        ++++  ++  
Sbjct: 150 INWSFQKSLKNRPSVTDLALSFSIPVWNLHRALSDCFYISEVFKKCDNLEELLLKATEPR 209

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           F +K       +   K                ++T +E    D  ++ L
Sbjct: 210 FLYKALISYEDRSLAKNAGFRWNSPVQGAWSRKLTTDEAKNLDFRVEIL 258


>gi|91070260|gb|ABE11179.1| putative DNA polymerase III, epsilon subunit [uncultured
           Prochlorococcus marinus clone HF10-11H7]
          Length = 259

 Score = 58.8 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 69/230 (30%), Gaps = 12/230 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + ++ D ETTGLD   D +IEIG +          +  +F   +  N  +          
Sbjct: 37  KILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNNEAEYVNGISAEVT 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
              +  +D   F     +  DF        +AHN +FD  +               S   
Sbjct: 97  NISQPWEDGLHFFLKLVDSSDFI-------VAHNVEFDKKWFGKGRLPKLNKKWICSLED 149

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVGGSQIN 182
              S  +           +L     +   HR+       S +        ++++  ++  
Sbjct: 150 INWSFQKSLKTRPSVTDLALSFSIPVWNLHRALSDCFYISEVFKKCDNLEELLLKATEPR 209

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           F +K       +   K                ++T +E    D  ++ L 
Sbjct: 210 FLYKALVSYEDRSLAKNAGFRWNSPVQGAWSRKLTTDEAKNLDFRVEILN 259


>gi|309809881|ref|ZP_07703731.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308169833|gb|EFO71876.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 233

 Score = 58.4 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    ++DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +            N              ++         ++  
Sbjct: 69  QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175
            IA    PS +    +          HR+   AL+ + +L  +   I+M+
Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIEKIEML 178


>gi|300773554|ref|ZP_07083423.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300759725|gb|EFK56552.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 316

 Score = 58.4 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 6/181 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ETTG++   DRI+EI  ++++            + P G     E+   HGI DE +
Sbjct: 11  FFDLETTGVNIPLDRIVEISILKVMPDGN-KEVLTRRINP-GMPIPAESSMFHGIYDEDV 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD PSF  +  E  DF  + +      N       +   L+      L+    +D  +I 
Sbjct: 69  KDLPSFKELGQEIADFIGDADLAGYNSNKFDVPMLMEEFLRANVDFSLEGRNFVDVQNIF 128

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
            +              ++       + H A  D     +V    +     + +  K    
Sbjct: 129 HQ----MEQRTLKAAYKFYCDQDLNNAHTAEADVTATYEVLKAQLSRYEDVLYEDKHGNK 184

Query: 191 R 191
            
Sbjct: 185 S 185


>gi|238919999|ref|YP_002933514.1| ribonuclease T [Edwardsiella ictaluri 93-146]
 gi|238869568|gb|ACR69279.1| ribonuclease T, putative [Edwardsiella ictaluri 93-146]
          Length = 221

 Score = 58.4 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D+  + ++EI AV   + D    +T++     + P  G + SPEAL  +G
Sbjct: 20  VVIDVETAGFDANRNALLEIAAVTLRMNDDGWLETDQCLHFHIDPFEGAELSPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +   +  +         A  +AHNA FD  F+ A   R    
Sbjct: 80  IDPHNPLRGAVSEYTALHAIFKMVRKGIKDQACNRAVVVAHNAHFDHSFLMAAAARAGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C    I       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACISAQIPFDSAQAHSALYDTQQTATLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|90961663|ref|YP_535579.1| ATP-dependent helicase DinG [Lactobacillus salivarius UCC118]
 gi|90820857|gb|ABD99496.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius
           UCC118]
          Length = 929

 Score = 58.4 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 9/186 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MI++      V D+ETTG      D+II+    + +  +K    F   + P G     E 
Sbjct: 1   MIKERI--YAVVDLETTGPKQDGSDKIIQFSC-DFVQSNKIVNHFSTLINP-GMPIPVEV 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            KL GI D+ ++  P F  +    +           AHN  FD  F+++EL+R     L+
Sbjct: 57  KKLTGIKDKDVRYAPYFDEVAGTIYAMLQNTTFV--AHNVNFDYSFLSSELERAGYPELE 114

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +                 L  + K   ++  H   H A  D+   +++ I +     
Sbjct: 115 LPMMDTVQLTQIIYPTLVSYRLIDISKYLQLSHIHP--HKADSDTKATAELLINLKKRIE 172

Query: 180 QINFGF 185
                 
Sbjct: 173 TFPLIL 178


>gi|311896766|dbj|BAJ29174.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 233

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 56/171 (32%), Gaps = 7/171 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+E TG      R++E+  V+L    +T R F   + P G         +HGI   
Sbjct: 4   YAVVDVEATGRSPWRHRVVEVAVVQLDAGLRTEREFATLVDPGG---PVGPTHVHGIAQA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F  I     +         + H+   D  F+  E  RI         +     
Sbjct: 61  DVLGAPRFRQIAPRLLELLAG--RVLVGHHVTCDRAFLEREFARIGVALPQVPLLCTMRL 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             R+   +    L++     G+       H AL D+    ++       G 
Sbjct: 119 ARRQLPEAGGYGLSACVDAAGLGWF--PAHTALGDARATVELLRHCRRTGG 167


>gi|325955495|ref|YP_004239155.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
 gi|323438113|gb|ADX68577.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
          Length = 466

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 69/182 (37%), Gaps = 7/182 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIET G  + +  I EI A+ L +  +    +Q  + P  +        L GIT E
Sbjct: 11  YAIVDIETNGSAAAHGGITEI-AIFLHNGKEIIDEYQTLVNPE-KPIPFHIQTLTGITPE 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P F  +  + + +  +  A ++AHN  FD  F+    ++     +D   I     
Sbjct: 69  MLVDAPRFDEVAKDVYSYLEK--AIFVAHNVSFDFSFL---HKQFLDVGIDWKPIKLCTV 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
              RK        +       + I    +H A  D+   + ++ +++    +      + 
Sbjct: 124 RLARKIFPGYTSYSLGSLCKNLNIPLHDRHRAAGDAKATTILFEQLLQNDQERWIEKMSK 183

Query: 189 ED 190
            +
Sbjct: 184 TN 185


>gi|307709855|ref|ZP_07646304.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK564]
 gi|307619404|gb|EFN98531.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK564]
          Length = 1463

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLSKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|297530374|ref|YP_003671649.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp. C56-T3]
 gi|297253626|gb|ADI27072.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp. C56-T3]
          Length = 242

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 57/177 (32%), Gaps = 9/177 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            ++ D+ETTG   +  D I+ + A + +    T   +   + P  +        L GI  
Sbjct: 62  FVIIDMETTGFSPEQGDEILAMAAAKTVGGVVT-DAYMTLVKPE-KPIPEHISALTGIEA 119

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +   P  +     F  F        I ++   D+ F+   L R  +       +    
Sbjct: 120 KDVVFAPPLAEALRTFVPFIAA--GVLIGYHIGHDLAFLRHALWRHYRQKWSGRFVDLQP 177

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            +    H     D    C      I    +H A  D   ++ ++  ++    Q    
Sbjct: 178 MMTLIGHSCPTFDDALAC----YGICCPRRHTADGDVEAMAKLWAILLDEFRQRGID 230


>gi|148994700|ref|ZP_01823804.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|168489751|ref|ZP_02713950.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP195]
 gi|147927100|gb|EDK78140.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|183571799|gb|EDT92327.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP195]
 gi|332075131|gb|EGI85601.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA17570]
          Length = 1463

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNAAFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185
                    R+ L  L KR+G+     H + + A     LL     ++       +    
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +       +K  + + ++  +++     I
Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631


>gi|330956986|gb|EGH57246.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 237

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 68/200 (34%), Gaps = 6/200 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ET+GL+   D+++ IGAV + D +    + F+   L  + + +    +     
Sbjct: 42  RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVLIHGLAP 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +      +P+ + +           ++  +  +A FD   +   L+      L       
Sbjct: 102 STIAAGSEPAQALLDFME----FVGDSPILGFHAPFDQHMLARALKESLDYRLQHPFFDA 157

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     ++              +    +H A  D+ + +++ + +     +     
Sbjct: 158 AEIAPMLFEQANLRHAGLDDWTRYFGLHAEERHNASADALVTAELALILFSHARRQQIDS 217

Query: 186 KTNEDRFFKEEKKTVPNISL 205
               +    + ++   + S 
Sbjct: 218 PLLLEEKLGQWRRRKQSHSF 237


>gi|253572229|ref|ZP_04849632.1| DNA Pol III epsilon chain [Bacteroides sp. 1_1_6]
 gi|298386580|ref|ZP_06996136.1| exonuclease [Bacteroides sp. 1_1_14]
 gi|251838004|gb|EES66092.1| DNA Pol III epsilon chain [Bacteroides sp. 1_1_6]
 gi|298260957|gb|EFI03825.1| exonuclease [Bacteroides sp. 1_1_14]
          Length = 259

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 8/191 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +   DRI+EI  +++  + ++  +T +  + P        +  +HGI D 
Sbjct: 10  VFFDLETTGTNINTDRIVEICYLKVYPNGNEETKTMR--INPEMH-IPEASSAVHGIYDA 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +           +      N           L+      +   + +D   
Sbjct: 67  DVADCPTFKEVAKNVARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMTKRKFVDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I  +          S   ++    S    H A  D+    +V    +     +       
Sbjct: 127 IFHK----MEQRTLSAAYKFYCEKSLEDAHTAEADTRATYEVLKAQLDRYPDLQNDIAFL 182

Query: 189 EDRFFKEEKKT 199
            +     +   
Sbjct: 183 AEYSSFTKNVD 193


>gi|261856008|ref|YP_003263291.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus
           c2]
 gi|261836477|gb|ACX96244.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus
           c2]
          Length = 481

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 6/147 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIETTG  ++ DRI EIG V L     T   +   + P G         L GIT+E + 
Sbjct: 24  LDIETTGSHTERDRITEIGIVTLHPDG-TQSNWSCLIHP-GCAIPARITTLTGITNEMVA 81

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D+P F+       +    +N   IAHNA+FD+GF+    +R          ++ ++ ++R
Sbjct: 82  DQPVFAHRAQALLERL--ENHIVIAHNARFDLGFLKQAFRREGIR--FNPSVLCSVKLSR 137

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKH 158
           +  P+ R        +           
Sbjct: 138 QMFPAERRHNLDSVMQRMGLSCAARHR 164


>gi|254430147|ref|ZP_05043850.1| exonuclease [Cyanobium sp. PCC 7001]
 gi|197624600|gb|EDY37159.1| exonuclease [Cyanobium sp. PCC 7001]
          Length = 292

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 68/217 (31%), Gaps = 10/217 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCPNGRKNSPEALKLHGITDE 68
           + D ETTGLD + D  +E+GA+    +  +        FL P  R+N  EA+        
Sbjct: 67  ILDTETTGLDPEQDHCLEVGAILF--HVPSRAVLSQISFLLP-VRENPAEAINGIAA--- 120

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P         ++         +AHNA FD  +           P   S       
Sbjct: 121 ATTRLPQPWRQGLSCFEAMAADADAVLAHNAAFDRQWFGRGELPALGAPWICSMEDIRWP 180

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVGGSQINFGFK 186
             R   P+      +L     +  +HR+    +  + +L        ++V   +    F+
Sbjct: 181 AERGLRPNPSVRDLALAYGVPVWAAHRALTDCIYLAQVLQRCEELEALLVVAREPRRLFR 240

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
                  + + K                R++  E+  
Sbjct: 241 AQLSYAERHKAKQAGFRWNDPVPGAWSRRLSAREVSA 277


>gi|186895675|ref|YP_001872787.1| ribonuclease T [Yersinia pseudotuberculosis PB1/+]
 gi|186698701|gb|ACC89330.1| ribonuclease T [Yersinia pseudotuberculosis PB1/+]
          Length = 226

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++++D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +         A  +AHNA FD  F+ A  +R +  
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 150

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D+   + ++ +++ 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCELVN 210

Query: 177 GGSQIN 182
              ++ 
Sbjct: 211 RWKKLG 216


>gi|153949552|ref|YP_001400734.1| ribonuclease T [Yersinia pseudotuberculosis IP 31758]
 gi|166991091|sp|A7FHK6|RNT_YERP3 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|152961047|gb|ABS48508.1| ribonuclease T [Yersinia pseudotuberculosis IP 31758]
          Length = 215

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++++D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKKLG 205


>gi|51596620|ref|YP_070811.1| ribonuclease T [Yersinia pseudotuberculosis IP 32953]
 gi|81825791|sp|Q66A36|RNT_YERPS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|51589902|emb|CAH21534.1| ribonuclease T [Yersinia pseudotuberculosis IP 32953]
          Length = 215

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++++D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKKLG 205


>gi|22125847|ref|NP_669270.1| ribonuclease T [Yersinia pestis KIM 10]
 gi|45441960|ref|NP_993499.1| ribonuclease T [Yersinia pestis biovar Microtus str. 91001]
 gi|149365707|ref|ZP_01887742.1| ribonuclease T [Yersinia pestis CA88-4125]
 gi|218929473|ref|YP_002347348.1| ribonuclease T [Yersinia pestis CO92]
 gi|229837906|ref|ZP_04458065.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229895067|ref|ZP_04510244.1| ribonuclease T (RNase T) [Yersinia pestis Pestoides A]
 gi|229898469|ref|ZP_04513615.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902309|ref|ZP_04517429.1| ribonuclease T (RNase T) [Yersinia pestis Nepal516]
 gi|24638167|sp|Q8ZE08|RNT_YERPE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|21958778|gb|AAM85521.1|AE013798_8 RNase T, degrades tRNA [Yersinia pestis KIM 10]
 gi|45436823|gb|AAS62376.1| ribonuclease T [Yersinia pestis biovar Microtus str. 91001]
 gi|115348084|emb|CAL21010.1| ribonuclease T [Yersinia pestis CO92]
 gi|149292120|gb|EDM42194.1| ribonuclease T [Yersinia pestis CA88-4125]
 gi|229680644|gb|EEO76740.1| ribonuclease T (RNase T) [Yersinia pestis Nepal516]
 gi|229688513|gb|EEO80583.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694272|gb|EEO84319.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701955|gb|EEO89977.1| ribonuclease T (RNase T) [Yersinia pestis Pestoides A]
 gi|320015036|gb|ADV98607.1| ribonuclease T [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 215

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++++D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKKLG 205


>gi|108807723|ref|YP_651639.1| ribonuclease T [Yersinia pestis Antiqua]
 gi|108811999|ref|YP_647766.1| ribonuclease T [Yersinia pestis Nepal516]
 gi|162420848|ref|YP_001606979.1| ribonuclease T [Yersinia pestis Angola]
 gi|165926445|ref|ZP_02222277.1| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165938652|ref|ZP_02227208.1| ribonuclease T [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010664|ref|ZP_02231562.1| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211013|ref|ZP_02237048.1| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167400761|ref|ZP_02306267.1| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167422151|ref|ZP_02313904.1| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167424940|ref|ZP_02316693.1| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|270490511|ref|ZP_06207585.1| ribonuclease T [Yersinia pestis KIM D27]
 gi|294503612|ref|YP_003567674.1| ribonuclease T [Yersinia pestis Z176003]
 gi|108775647|gb|ABG18166.1| RNAse T [Yersinia pestis Nepal516]
 gi|108779636|gb|ABG13694.1| RNAse T [Yersinia pestis Antiqua]
 gi|162353663|gb|ABX87611.1| ribonuclease T [Yersinia pestis Angola]
 gi|165913526|gb|EDR32147.1| ribonuclease T [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921666|gb|EDR38863.1| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165990366|gb|EDR42667.1| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166208193|gb|EDR52673.1| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166958963|gb|EDR55984.1| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167049614|gb|EDR61022.1| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167056127|gb|EDR65905.1| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|262361655|gb|ACY58376.1| ribonuclease T [Yersinia pestis D106004]
 gi|262365605|gb|ACY62162.1| ribonuclease T [Yersinia pestis D182038]
 gi|270339015|gb|EFA49792.1| ribonuclease T [Yersinia pestis KIM D27]
 gi|294354071|gb|ADE64412.1| ribonuclease T [Yersinia pestis Z176003]
          Length = 226

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++++D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +         A  +AHNA FD  F+ A  +R +  
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 150

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D+   + ++ +++ 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCELVN 210

Query: 177 GGSQIN 182
              ++ 
Sbjct: 211 RWKKLG 216


>gi|145598067|ref|YP_001162143.1| ribonuclease T [Yersinia pestis Pestoides F]
 gi|170024107|ref|YP_001720612.1| ribonuclease T [Yersinia pseudotuberculosis YPIII]
 gi|145209763|gb|ABP39170.1| RNAse T [Yersinia pestis Pestoides F]
 gi|169750641|gb|ACA68159.1| ribonuclease T [Yersinia pseudotuberculosis YPIII]
          Length = 226

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++++D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +         A  +AHNA FD  F+ A  +R +  
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 150

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D+   + ++ +++ 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCELVN 210

Query: 177 GGSQIN 182
              ++ 
Sbjct: 211 RWKKLG 216


>gi|168490797|ref|ZP_02714940.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC0288-04]
 gi|225853872|ref|YP_002735384.1| DNA polymerase III PolC [Streptococcus pneumoniae JJA]
 gi|183574875|gb|EDT95403.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC0288-04]
 gi|225723163|gb|ACO19016.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae JJA]
          Length = 1463

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNAAFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185
                    R+ L  L KR+G+     H + + A     LL     ++       +    
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +       +K  + + ++  +++     I
Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631


>gi|149277808|ref|ZP_01883948.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39]
 gi|149231496|gb|EDM36875.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39]
          Length = 456

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 4/118 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V DIETTG  +  + I EI  + + +     + ++  + P G+        L GI+
Sbjct: 1   MLYAVVDIETTGGHASGNGITEIS-ILVHNGHSIVQNYETLINP-GQYIPAHIEALTGIS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +E ++  PSF+ + +E +   ++    ++AHN  FD  FI  +L     +        
Sbjct: 59  NEMVETAPSFNQVAAEVYQLLHD--KIFVAHNVNFDFSFIRHQLGVCGYELSCRKLCT 114


>gi|158316676|ref|YP_001509184.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec]
 gi|158112081|gb|ABW14278.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec]
          Length = 389

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 66/177 (37%), Gaps = 7/177 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL    DR++ +  V           +   L P      P  + +HG+T +
Sbjct: 77  YAVVDVETTGLSPTRDRVLSVAVVLTAADGTVEHRWSTLLDPG---CDPGPVHIHGLTRQ 133

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P+F+++  E            +AHNA FD   +  E  RI        R+     
Sbjct: 134 RLAGSPTFAAVADEVAGLLAG--RVLVAHNAAFDWRMLAGEAMRIGTTIPVEWRLCTLTL 191

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +R         L SL   +G+       H A  D+ +L+ +  +++   +      
Sbjct: 192 ASRLGLELPSLRLASLAAYWGVVQRRA--HDAQDDAEVLAALLPRILQRAADQYLEL 246


>gi|120406462|ref|YP_956291.1| DNA polymerase III subunit epsilon [Mycobacterium vanbaalenii
           PYR-1]
 gi|119959280|gb|ABM16285.1| DNA polymerase III, epsilon subunit [Mycobacterium vanbaalenii
           PYR-1]
          Length = 333

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 74/201 (36%), Gaps = 7/201 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RI+ + A+ L D     ++    L P      P    +HG+T E L
Sbjct: 22  VVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPG---VDPGPTHVHGLTAEML 78

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +P+F  +  +  +         +AHN  FD  F+ AE + ++ +    + +       
Sbjct: 79  AGQPAFGDVVGDLIEVLRG--RTLVAHNVGFDYSFLTAEAEMVHAELPVDTVMCTVELAR 136

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R         L +L   +G+T      H AL D+ +L+ +   ++V   +       +  
Sbjct: 137 RLDLGLDNLRLETLAAHWGVTQMKP--HDALDDAMVLAQILKPVLVRAQERRKWLPVHPV 194

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
                    + +         
Sbjct: 195 SRRTWPNGRITHDEFRPLKAL 215


>gi|88800698|ref|ZP_01116257.1| ribonuclease T [Reinekea sp. MED297]
 gi|88776562|gb|EAR07778.1| ribonuclease T [Reinekea sp. MED297]
          Length = 215

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 66/205 (32%), Gaps = 13/205 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVF-LCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L    D          F + P  G      AL   G
Sbjct: 11  VVIDVETAGFNAKTDALLEIAAVTLKMTDDGWLEQDECLFFNVEPFEGANLEQAALDFTG 70

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +       + A  + HNA FD  F+ A  +R N  
Sbjct: 71  IDPHNPLRGAVDEGDALKEIFKMIRKGMKAAGCKRAILVGHNANFDHNFLFAAAERANNK 130

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C+  G+  S +  H A  D+   ++++  M+ 
Sbjct: 131 RNPFHPFTTFDTAALSALVYGQTVLKRACQASGVEFSDKEAHNAEYDTRKTAELFCNMIN 190

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVP 201
               +        +     E     
Sbjct: 191 QWKTLGGWPPAPVESTENAESGDNE 215


>gi|315500766|ref|YP_004089567.1| Exonuclease RNase T and DNA polymerase III [Asticcacaulis
           excentricus CB 48]
 gi|315418778|gb|ADU15416.1| Exonuclease RNase T and DNA polymerase III [Asticcacaulis
           excentricus CB 48]
          Length = 324

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 65/168 (38%), Gaps = 15/168 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+   D +IEIGA+     D        +V+  L   G        +L GI
Sbjct: 73  VIIDTETTGLNKAEDAVIEIGAIAFRFDDRGVVGDLIEVYGALQDPGFPIPANITELTGI 132

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D  +K +    SI     +   +     IAHNA FD  +     +R++    D +    
Sbjct: 133 DDAMVKGQ----SIDFHVLEALIKPADLIIAHNAAFDRPY----CERLSPAFADKAWACS 184

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              I  +      + L  L  + G        H A+ D   L +V ++
Sbjct: 185 NSEIDWKARGFEGSKLGYLITQSGYFH---DGHRAVDDCFALLEVLLQ 229


>gi|332203439|gb|EGJ17506.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA47368]
          Length = 1463

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNAAFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|262194125|ref|YP_003265334.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077472|gb|ACY13441.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 4/117 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNG-RKNSPEALKLHGITD 67
           +  D ETTGLD +   I+EI A+ +   +       V  + P       PEAL+++G   
Sbjct: 5   VFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERALVLRVRPERLEDADPEALEVNGYRR 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
               D  S     +E         A    HN  FD  F+ A    +   P +     
Sbjct: 65  RAWADAVSLGDAMAELAPMLEG--AVLAGHNVAFDRRFLEAAWDYVGHRPENLDHHA 119


>gi|170761478|ref|YP_001786710.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408467|gb|ACA56878.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 855

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 4/176 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +VFD+E+TG+++  D I++I  +++ +  +   +FQ FL P         +       
Sbjct: 494 NVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLIPKKSVGDSYLVH-GFSDQ 552

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              ++  +   +  +F +F  +     + HN  FD+  +N+EL+R++ +        DTL
Sbjct: 553 FLKENGENKKVVLKDFLEFIKD--TVIVGHNVTFDISILNSELERLSLEKASFKTYYDTL 610

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            IARR +PS  N       +       +S H A+ D     DV + M+    +   
Sbjct: 611 DIARRFYPSLTNHKLETLSKL-FNTETKSSHDAMDDILATKDVLMAMLKEKVKPTI 665


>gi|169627433|ref|YP_001701082.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus ATCC
           19977]
 gi|169239400|emb|CAM60428.1| DNA polymerase III, epsilon subunit (DnaQ) [Mycobacterium
           abscessus]
          Length = 327

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 77/209 (36%), Gaps = 7/209 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +V D+ET+G      R+I + A+ +        +    L P      P    +HG+T 
Sbjct: 13  KWVVVDLETSGFQPGRARVISVAALAMDADGTITDSVVSLLNPG---VDPGPTHVHGLTP 69

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L+ +P FS I  +            +AHN  FD  F+ AE + +  +    + +    
Sbjct: 70  EMLEGQPEFSDIAPDLIALLRG--RTLVAHNVGFDYSFLAAEAELVGAELPTEAVMCTVE 127

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
              R +  +    L +L   +G+       H A  D+ +L++V  K++    +       
Sbjct: 128 LTRRLELDTPNLRLETLAAHWGVE--QLKAHDAYDDARVLAEVLPKVLERARERGTWLPI 185

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            E    +     V +  L         + 
Sbjct: 186 RETTRKRWPNGRVTHDELRPLKTLASRQP 214


>gi|331018941|gb|EGH98997.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 204

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 3/168 (1%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 4   RVAVIDFETTGISPNPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF           +             +  ++      ++  
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +           L S  +      +HR+   A + ++L + +  ++
Sbjct: 122 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 169


>gi|237801479|ref|ZP_04589940.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|330873519|gb|EGH07668.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|331024338|gb|EGI04395.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 203

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 3/168 (1%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RVAVIDFETTGISPNPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF           +             +  ++      ++  
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 120

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +           L S  +      +HR+   A + ++L + +  ++
Sbjct: 121 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 168


>gi|237649657|ref|ZP_04523909.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974]
 gi|237821357|ref|ZP_04597202.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974M2]
          Length = 1463

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNAAFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|213966786|ref|ZP_03394937.1| exonuclease [Pseudomonas syringae pv. tomato T1]
 gi|301383295|ref|ZP_07231713.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13]
 gi|302062466|ref|ZP_07254007.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40]
 gi|302133448|ref|ZP_07259438.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928636|gb|EEB62180.1| exonuclease [Pseudomonas syringae pv. tomato T1]
          Length = 204

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 3/168 (1%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 4   RVAVIDFETTGISPNPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF           +             +  ++      ++  
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +           L S  +      +HR+   A + ++L + +  ++
Sbjct: 122 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 169


>gi|213162305|ref|ZP_03348015.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 83

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            HGALLD+ +L++VY+ M  G + + F  +    R   E         + +  +      
Sbjct: 1   MHGALLDAQILAEVYLAMTGGQTSMTFAMEGETQRQQGEATIQRI---VRQASRLRVVFA 57

Query: 217 TKEELDEHDKTIQTLGKN---AIWD 238
           ++EEL  H+  +  + K     +W 
Sbjct: 58  SEEELAAHESRLDLVQKKGGSCLWR 82


>gi|168494862|ref|ZP_02719005.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|168494874|ref|ZP_02719017.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|168495024|ref|ZP_02719167.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575147|gb|EDT95675.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575215|gb|EDT95743.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575301|gb|EDT95829.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
          Length = 307

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 6/215 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ET   +     +  IG V+  D +     F   + P   +     + +HGIT E
Sbjct: 5   YVALDVET--ANDFRGSVCSIGLVKFKDGNIV-DAFYTLINPE-EEFDDFNIFIHGITPE 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +     DF        +AH A+FD+G +    Q+   D  +   I     
Sbjct: 61  DVLDSPTFPEVRKAIVDFIGS--DIVVAHFAQFDMGALKDVYQKYELDFDNIEYICSYRL 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                       L  L K   I + H +       S L+ +  +          F  + +
Sbjct: 119 AKVALPGQLNYKLKRLAKNLNIELDHHNALSDARASGLILEYLLSTNSFSDLNAFLKEYS 178

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
            ++     +         +  + L  + T+EE   
Sbjct: 179 YNKTGLLGQYGFKRKKSYQYKENLIYQPTEEEKAA 213


>gi|117920981|ref|YP_870173.1| ribonuclease T [Shewanella sp. ANA-3]
 gi|166200021|sp|A0KY98|RNT_SHESA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|117613313|gb|ABK48767.1| RNAse T [Shewanella sp. ANA-3]
          Length = 222

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S+ D ++EI    +++ D      ++T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNSQTDALLEIAVTLLKMDDEGLLGIDKTLHFNIEPFEGANLEPEALAFNG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +     +   +  +AHNA FD GF++  ++R +  
Sbjct: 80  IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L   C   GI   ++  H AL D+   ++++  ++ 
Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCHIVN 199

Query: 177 GGSQIN 182
              Q+ 
Sbjct: 200 RWKQLG 205


>gi|333027027|ref|ZP_08455091.1| putative DNA polymerase III [Streptomyces sp. Tu6071]
 gi|332746879|gb|EGJ77320.1| putative DNA polymerase III [Streptomyces sp. Tu6071]
          Length = 611

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+ET+GL ++ DR++ +  V +  D  +T   F   + P      P  + +HG+T E L
Sbjct: 23  VDVETSGLMARRDRVLSVAVVTMGPDGEQTGE-FSTLVDPG---CDPGPVDVHGLTRERL 78

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P+F  I         +     +AHNA+FD  F+  E  R         R+       
Sbjct: 79  SGAPAFDQIAGRLGAMLQD--RVLVAHNAQFDYDFLAHEFARARLYLPVTRRLCTLALNR 136

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +   P+    L+SL   YG+  +    H AL D+ +L+ ++   +   ++++   
Sbjct: 137 QVDPPTRDMKLDSLAAHYGVPRTRA--HDALDDTRVLAGIFRATLREAARLDLPL 189


>gi|300767360|ref|ZP_07077272.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300495179|gb|EFK30335.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 936

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 71/184 (38%), Gaps = 7/184 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K      V DIETTG   K  DRII+IG   + +      TF   + P         
Sbjct: 1   MTMKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFVKNNKII-NTFATDVNP-LTTVPAVI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             L GI++  ++  P F  +    +         ++AHN  FD+ FIN+ELQR+    L 
Sbjct: 59  ENLTGISNARVRKAPPFDDLAGTVYSLLQG--TVFVAHNVNFDLPFINSELQRVGYPELP 116

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +            +S   L  L     I  +H   H A  D+   + ++I +    +
Sbjct: 117 IQAVDTVSLSQILLPTASSFRLRDLSHLLAIDHNHP--HSADSDAIATAHLFITLQQRLA 174

Query: 180 QINF 183
            +  
Sbjct: 175 HLPL 178


>gi|146309112|ref|YP_001189577.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
 gi|145577313|gb|ABP86845.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
          Length = 233

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 73/199 (36%), Gaps = 12/199 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-----NRTFQVFLCPNGRKNSPEA 59
           ++ R +V D+ETTGL+ + D+++ IGAV + + +        RT  +   P+ + ++   
Sbjct: 37  HQQRFVVLDLETTGLNMRRDQVLAIGAVVIDNGAIDLAQQFERTLHL---PDHQASASTL 93

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +     ++     +P  + +           ++  +A +A+FD   +   L++     L 
Sbjct: 94  IHGIAPSEVARGVEPVEALLGFME----FVGSSPVLAFHAEFDQRMLARALKQHLGYRLQ 149

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            S              S               +    +H A  D+ + +++ + +     
Sbjct: 150 HSFFDVAEIAPLLCPQSRIRQGGLDEWVAEFGLQVHQRHNASADALVTAELALMLFSKAR 209

Query: 180 QINFGFKTNEDRFFKEEKK 198
           +         +R     ++
Sbjct: 210 RQGIDSLCELERQLSSRRR 228


>gi|116493923|ref|YP_805657.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Lactobacillus casei ATCC 334]
 gi|116104073|gb|ABJ69215.1| 3'-5' exonuclease and CRISPR-associated protein cas2 [Lactobacillus
           casei ATCC 334]
          Length = 301

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50
            +  DIETTGLD++ D II IGAV+    ++T + F   + P
Sbjct: 130 FVALDIETTGLDAERDAIIAIGAVKGPSVNETEK-FTTLVNP 170


>gi|90579019|ref|ZP_01234829.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
 gi|90439852|gb|EAS65033.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
          Length = 249

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL++  D II +G V   ++     ++    + P  +    +++ +HGIT 
Sbjct: 59  FVALDFETTGLNANKDDIISVGLVPFTINRIFCKQSQHWVVKPKAK-LDEDSVIIHGITH 117

Query: 68  EFLKDKPSFSS 78
             ++  P    
Sbjct: 118 SDVQTAPDIRR 128


>gi|18309405|ref|NP_561339.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13]
 gi|18144081|dbj|BAB80129.1| probable ATP-dependent DNA helicase [Clostridium perfringens str.
           13]
          Length = 870

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 76/213 (35%), Gaps = 11/213 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             IVFD+E+TG+D   D II+I A++L    +    F+ FL     K   +         
Sbjct: 503 NIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLK---NKKPVKDSYYVHGFS 559

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +                +++  + HN ++D+  + +EL+R N          DTL
Sbjct: 560 DEMLQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERSNLGKPKFKTFYDTL 619

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-------IKMMVGGSQ 180
            I RR +P + N       +      H+  H A+ D     ++        I+       
Sbjct: 620 DIYRRFYPGNINYKLENLSKV-YDTKHKPSHDAMDDIIATGELLVRAINEKIRETSMERM 678

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
                         ++   +  I+  KR   L 
Sbjct: 679 TLMSKHLKAFTAISKKLNELFQIAESKRPYELV 711


>gi|303271977|ref|XP_003055350.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
 gi|226463324|gb|EEH60602.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
          Length = 1468

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 17/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--D 67
           IVFD+ETTGL    DRIIEI A +L D   T+      + P     + +  +L GIT   
Sbjct: 308 IVFDLETTGLAKLKDRIIEIAAYDLNDK--THAPMSTLVNPGRTYLTGQITRLTGITNAM 365

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNA-------EWIAHN-AKFDVGFINAELQRINKDPLD 119
                 PSF        +F +E             AHN  +FD GF+ AE  RI ++  D
Sbjct: 366 VSNPGVPSFVRAAELLEEFVDEARRRGGGASVILAAHNARQFDAGFLKAEYDRIQREFPD 425

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK-----HGALLDSHLLSDVYIKM 174
             R +DTL IAR+  P +    +   +        +       H A  D+ +L ++   M
Sbjct: 426 DWRFVDTLPIARKLVPKTEVFGSHKMEALATRYDVKPVDGETAHRAGADARVLGEIVEAM 485

Query: 175 MV 176
           + 
Sbjct: 486 LG 487


>gi|153817923|ref|ZP_01970590.1| Gp39 [Vibrio cholerae NCTC 8457]
 gi|126511550|gb|EAZ74144.1| Gp39 [Vibrio cholerae NCTC 8457]
          Length = 184

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+ D ETTGLDS   RI+E+  ++        + +   + P     SPE   +HGIT++ 
Sbjct: 10  IILDTETTGLDSD-ARIVEVSIIDAQTGI---KLYSSLVNP-LCSISPEVTAIHGITNDM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+F  ++++   + ++  A    +N  FD       L+       +  R       
Sbjct: 65  VIDMPTFDKVWNDIKGYLSD--AVIYVYNLDFDYRMFAQSLRPFGYPVANLVRFFGGGVC 122

Query: 130 ARRKH 134
             R +
Sbjct: 123 VMRWY 127


>gi|296110415|ref|YP_003620796.1| ATP-dependent helicase DinG [Leuconostoc kimchii IMSNU 11154]
 gi|295831946|gb|ADG39827.1| ATP-dependent helicase DinG [Leuconostoc kimchii IMSNU 11154]
          Length = 801

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 7/174 (4%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+ETTG   +K  RII+IG   +         F+ F+ P G+  +    +L  I+ 
Sbjct: 7   FVVVDLETTGQSVAKGGRIIQIGMTFIKQRKIV-DHFESFVNP-GQLIARNIQQLTHISQ 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +K+ P F  I     +   +        N  +             K        +   
Sbjct: 65  KEVKNAPYFEEIAPLLQNLLKDAVIIAHNINFDYPYLNDEFVRTGFQKLNSAAIDTVQLA 124

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            I     P  R    +      + I+  + H A  D+H  + +++K+     Q+
Sbjct: 125 QILLPTAPGYRLLDLTTY----LDITLNNAHRANADAHATALLFLKLWQRAEQL 174


>gi|283851810|ref|ZP_06369087.1| DNA polymerase III, epsilon subunit [Desulfovibrio sp. FW1012B]
 gi|283572726|gb|EFC20709.1| DNA polymerase III, epsilon subunit [Desulfovibrio sp. FW1012B]
          Length = 249

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN 51
           +  D E TG D +   ++ IGAV L          F   + P 
Sbjct: 49 FVAVDTELTGFDPRRHALVSIGAVRLRGLSILPGEAFYTLVRPP 92


>gi|197337117|ref|YP_002157942.1| DNA polymerase III, epsilon chain [Vibrio fischeri MJ11]
 gi|197314369|gb|ACH63818.1| DNA polymerase III, epsilon chain [Vibrio fischeri MJ11]
          Length = 259

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 8/178 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-------LCPNGRKNS 56
            N M   V D ET+GL+ K D I+ IG V +++      + Q         +        
Sbjct: 61  SNDMAFTVVDFETSGLNPKTDHIVSIGWVHIINGVIKLNSAQHHIINEPISINAEDEGEE 120

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            +            + K   S   +    F N  +   + H A  +  F+      +   
Sbjct: 121 RDHTARSLHHILPEQQKMGISLEKAMECFFSNLPSNILVVHGATIEQRFLEQFFLSLQLP 180

Query: 117 PLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            L         +     +    + D      R    +     H AL+D+   +++++ 
Sbjct: 181 NLPMIWLDTLRIEQNTIQQNRYQRDFRLFSLRRQYKLPDYPAHHALVDAISTAELFLA 238


>gi|149179899|ref|ZP_01858404.1| DNA polymerase III, alpha subunit [Bacillus sp. SG-1]
 gi|148852091|gb|EDL66236.1| DNA polymerase III, alpha subunit [Bacillus sp. SG-1]
          Length = 245

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 73/176 (41%), Gaps = 8/176 (4%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +FD+ETTG   +  D I+ IGA+++  +     +TF   + P  +  S E  +  G+   
Sbjct: 65  IFDLETTGFFPEIGDEIVSIGAIKMQGNKILDQKTFYEVINP-LQNVSLETKRFTGLRRT 123

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +      +F +F        +AH A FD+ F+   +++ +    +P  I     
Sbjct: 124 DFIKAKTLPVGLKDFLEFCKG--TILVAHPASFDINFLQKRIRKWDLPSFEPEYIDSYAL 181

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                +       +         IS +++H AL D+ + ++V+ ++++   +    
Sbjct: 182 AKELLNEQKCYLDD---LVKKFQISEKTRHHALNDAIMTAEVFQELLILCKEKKVE 234


>gi|327462769|gb|EGF09091.1| DNA polymerase III PolC [Streptococcus sanguinis SK1057]
          Length = 1462

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GYPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +++      +  EF +F  +  +  +AHNA FDVGF+N   +R     +       ++ 
Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
                 ++        +   +  +   H + + A     LL      +       N    
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T+       +K  V + ++  +++
Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624


>gi|149927335|ref|ZP_01915591.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
 gi|149824049|gb|EDM83272.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
          Length = 248

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCP 50
            D ETTGL+ + D II IGAV  + +     ++    L P
Sbjct: 57 AIDFETTGLNPEYDDIISIGAVPLMSNRIMLGQSRYWILKP 97


>gi|110799207|ref|YP_694883.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
 gi|110673854|gb|ABG82841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
          Length = 870

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 4/166 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             IVFD+E+TG+D   D II+I A++L    +    F+ FL     K   +         
Sbjct: 503 NIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLK---NKKPVKDSYYVHGFS 559

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +                +++  + HN ++D+  + +EL+R N          DTL
Sbjct: 560 DEMLQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYDTL 619

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            I RR +P + N       +      H+  H A+ D     ++ ++
Sbjct: 620 DIYRRFYPGNINYKLENLSKV-YDTKHKPSHDAMDDIIATGELLVR 664


>gi|330504960|ref|YP_004381829.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
 gi|328919246|gb|AEB60077.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina NK-01]
          Length = 200

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 7/168 (4%)

Query: 7   MRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M  I V D ETTG+     R  EIG   +      +R +Q  +  +G    P   +L GI
Sbjct: 1   MESIAVIDFETTGVSPTQARATEIGVAIIEGGRIVDR-YQSLMN-SGAWVPPFIEQLTGI 58

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  L+  P    + +E  DF  E     +AHNA FD  F +AEL R+ +  L P     
Sbjct: 59  SNAMLRKAPPSDQVMNEVADFIGE--RPLLAHNASFDQKFWDAELARVRRRRLQPFACSL 116

Query: 126 TLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            LS        S    +LN+         +HR+   A + ++L   ++
Sbjct: 117 LLSRRLLPEAPSHKLGNLNAWAGLPDTGRAHRALADAEMAANLTLHLF 164


>gi|224023901|ref|ZP_03642267.1| hypothetical protein BACCOPRO_00618 [Bacteroides coprophilus DSM
           18228]
 gi|224017123|gb|EEF75135.1| hypothetical protein BACCOPRO_00618 [Bacteroides coprophilus DSM
           18228]
          Length = 163

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 63/170 (37%), Gaps = 8/170 (4%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+     D ET   +++   +  +G V + +      TF   + P     S    ++HG+
Sbjct: 1   MKDFAAIDFET--ANNQRSSVCSVGIVVVRNDEIV-DTFYSLINPEPNYYSYWCSQVHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E  ++ P F  ++ +     +      +AHN  FD   + A  +    D  D      
Sbjct: 58  TREDTENAPVFPDVWKQIEPLIDG--LPLVAHNRPFDESCLKAVFRVYQMDYPDYEFYDT 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                +       + L+++    G      + H AL D+   + +  +++
Sbjct: 116 LCVSRKVFPYLPNHQLHTVAAACG--YHLENHHHALADAEACAWIAREIL 163


>gi|28867700|ref|NP_790319.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28850935|gb|AAO54014.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 237

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 67/200 (33%), Gaps = 6/200 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ET+GL+   D+++ IGAV + D +    + F+   L  + + +    +     
Sbjct: 42  RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKLSPAVLIHGLAP 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +      +P  + +           ++  +  +A FD   +   L+      L  +    
Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLARALKESLDYRLQHAFFDA 157

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     ++              +    +H A  D+ + +++ + +     +     
Sbjct: 158 AEIAPMLCEQANLRHAGLDDWTQFFGLHAEERHNASADALVTAELALILFSHARRQQIDS 217

Query: 186 KTNEDRFFKEEKKTVPNISL 205
                    + ++   + S 
Sbjct: 218 TLRLAESLGQWRRRKQSHSF 237


>gi|332365809|gb|EGJ43566.1| DNA polymerase III PolC [Streptococcus sanguinis SK355]
          Length = 1462

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSVFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +++      +  EF +F  +  +  +AHNA FDVGF+N   +R     +       ++ 
Sbjct: 482 HVRNAKPLEQVLKEFQEFCKD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
                 ++        +   +  +   H + + A     LL      +       N    
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T+       +K  V + ++  +++
Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624


>gi|255292918|dbj|BAH90017.1| DNA polymerase III epsilon subunit [uncultured bacterium]
 gi|255293172|dbj|BAH90263.1| DNA polymerase III epsilon subunit [uncultured bacterium]
          Length = 297

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 69/236 (29%), Gaps = 27/236 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL---DYSK--TNRTFQVFLCPNGRKNSPEALKLHGI 65
           V D+ETTGLD + D IIE+         D +      +FQ    P+              
Sbjct: 45  VVDVETTGLDPQRDEIIELAMTPFNYGLDGTIFSVGDSFQRLRQPSKPIAPEITAITGIT 104

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +           +       F    +  IAHNA FD  F+    +R N           
Sbjct: 105 NEMVAGQ-----IVDPAAVASFAAPASLVIAHNAAFDRRFL----ERFNDVFSTKPWACS 155

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---------KMMV 176
              I           L  L +  G            L +  L  +++         +++ 
Sbjct: 156 LSQIDWAAEGFEGTKLAYLAQAAGFFYDRHRAMHDCLATVELLAMWLPRSGATGLSRLLD 215

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVP----NISLLKRDKPLFTRITKEELDEHDKTI 228
           G   +++        F  ++         N     + +  +  + + + +   + +
Sbjct: 216 GARAVSWRIWAENAPFDLKDVLKARGYRWNGDPGPQPRAWYIDVPEAQCEAELRFL 271


>gi|169342971|ref|ZP_02863999.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens C str. JGS1495]
 gi|169298880|gb|EDS80954.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens C str. JGS1495]
          Length = 876

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 4/166 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             IVFD+E+TG+D   D II+I A++L    +    F+ FL     K   +         
Sbjct: 509 NIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLK---NKKPVKDSYYVHGFS 565

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +                +++  + HN ++D+  + +EL+R N          DTL
Sbjct: 566 DEMLQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYDTL 625

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            I RR +P + N       +      H+  H A+ D     ++ ++
Sbjct: 626 DIYRRFYPGNINYKLENLSKV-YDTKHKPSHDAMDDIIATGELLVR 670


>gi|315303836|ref|ZP_07874324.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           ivanovii FSL F6-596]
 gi|313627797|gb|EFR96442.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           ivanovii FSL F6-596]
          Length = 928

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 5/163 (3%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + R IV D+ETTG  + ++DRII+  A  +    +   T+  FL P  +       +L 
Sbjct: 2   KQKRYIVVDLETTGNQASRDDRIIQFAACFVESGKRL-ETYATFLNPE-KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+ + ++D P F  +     +   +    ++AHN  FD  F+  E+ R         ++
Sbjct: 60  GISPKDVRDAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREMNRAGISLGKMKKL 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
                            L  L   +G+      +  +  +   
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFGLGHDKPHRADSDAEVTA 160


>gi|21592760|gb|AAM64709.1| unknown [Arabidopsis thaliana]
          Length = 316

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 61/181 (33%), Gaps = 13/181 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D+ETTGL  KN+RIIEI A ++     +  TFQ  + P     +   +         
Sbjct: 112 IVSDLETTGLHRKNERIIEIAAQDIAGGGYS--TFQTLVNPGVVPITNAHIHGIRNDMVC 169

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124
             + P    +   F  +   +         +AHN K                 +  + ++
Sbjct: 170 RPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNWLL 229

Query: 125 DTLSIARRKHPSSRNDLNSLCK------RYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                  R++  S      L         Y         H AL D  LLS V+ K+ +  
Sbjct: 230 LDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLTIDL 289

Query: 179 S 179
            
Sbjct: 290 K 290


>gi|15240411|ref|NP_198046.1| exonuclease family protein [Arabidopsis thaliana]
 gi|30690464|ref|NP_851082.1| exonuclease family protein [Arabidopsis thaliana]
 gi|30690468|ref|NP_851083.1| exonuclease family protein [Arabidopsis thaliana]
 gi|42573491|ref|NP_974842.1| exonuclease family protein [Arabidopsis thaliana]
 gi|51968684|dbj|BAD43034.1| unknown protein [Arabidopsis thaliana]
 gi|108385373|gb|ABF85778.1| At5g26940 [Arabidopsis thaliana]
 gi|332006246|gb|AED93629.1| exonuclease family protein [Arabidopsis thaliana]
 gi|332006247|gb|AED93630.1| exonuclease family protein [Arabidopsis thaliana]
 gi|332006248|gb|AED93631.1| exonuclease family protein [Arabidopsis thaliana]
 gi|332006249|gb|AED93632.1| exonuclease family protein [Arabidopsis thaliana]
          Length = 316

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 61/181 (33%), Gaps = 13/181 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D+ETTGL  KN+RIIEI A ++     +  TFQ  + P     +   +         
Sbjct: 112 IVSDLETTGLHRKNERIIEIAAQDIAGGGYS--TFQTLVNPGVVPITNAHIHGIRNDMVC 169

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124
             + P    +   F  +   +         +AHN K                 +  + ++
Sbjct: 170 RPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNWLL 229

Query: 125 DTLSIARRKHPSSRNDLNSLCK------RYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                  R++  S      L         Y         H AL D  LLS V+ K+ +  
Sbjct: 230 LDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLTIDL 289

Query: 179 S 179
            
Sbjct: 290 K 290


>gi|238927543|ref|ZP_04659303.1| possible exonuclease [Selenomonas flueggei ATCC 43531]
 gi|238884825|gb|EEQ48463.1| possible exonuclease [Selenomonas flueggei ATCC 43531]
          Length = 219

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 71/222 (31%), Gaps = 23/222 (10%)

Query: 7   MRKIVFDIETTGLDSKN-----------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M+ IV D+E   ++                IIEIGAV L +       FQ ++CP     
Sbjct: 1   MKHIVVDLE---MNPVGKEYRDVRRKLNGEIIEIGAVRLNEDFVQEDEFQCYVCPEYGMV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA---KFDVGFINAELQR 112
                +L GIT E +   P+F+  F  F  +  E   +  + +    K        +L  
Sbjct: 58  KKHITELTGITQEKVAGHPAFADSFHAFVAWIGEAETKIYSWSMSDIKQLRKECRLKLPD 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +   LD   +        R    +   L       G        H AL D+   S V  
Sbjct: 118 FDVTWLDTRWVDLQQEFDDRLGLHNSLALKHALGAMGRRFEGSQ-HSALADAVNTSAVLA 176

Query: 173 KMMVGGS-----QINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
            M          +         D       +  P++  LKR+
Sbjct: 177 LMQDDAKFRETMRPVLEILEPSDGLSNSIGELFPDLEKLKRN 218


>gi|187932764|ref|YP_001885887.1| exonuclease [Clostridium botulinum B str. Eklund 17B]
 gi|187720917|gb|ACD22138.1| putative exonuclease [Clostridium botulinum B str. Eklund 17B]
          Length = 974

 Score = 58.4 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 10/168 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             I  DIETTGLD  N  IIEIGAV++ + + T  T++V + P             G+ +
Sbjct: 10  NVIYLDIETTGLDENNCEIIEIGAVKIKNSNVT--TYEVLIRPKRNVPISIYKLCQGLKE 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L +      I +E       ++   I HN  F+  F++  +  I  +        D++
Sbjct: 68  EELMNSKYLEDIKNEL--LVFLEDLPLICHNGGFERKFLSCHIPEIKNEIF------DSM 119

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++    P  +        +    +     H  L DS     V   ++
Sbjct: 120 ELSAILEPWRKEYNLDSLIKSITILDKDEFHRGLEDSIDTLKVVNSLL 167


>gi|330874768|gb|EGH08917.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 237

 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 66/200 (33%), Gaps = 6/200 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ET+GL+   D+++ IGAV + D +    + F+   L  + + +    +     
Sbjct: 42  RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVLIHGLAP 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +      +P  + +            +  +  +A FD   +   L+      L  +    
Sbjct: 102 SAIAAGSEPVEALLDFME----FVGESPILGFHAPFDQHMLARALKESLDYRLQHAFFDA 157

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     ++              +    +H A  D+ + +++ + +     +     
Sbjct: 158 AEIAPMLCEQANLRHAGLDDWTQFFGLHAEERHNASADALVTAELALILFSHARRQQIDS 217

Query: 186 KTNEDRFFKEEKKTVPNISL 205
                    + ++   + S 
Sbjct: 218 PVRLAESLGQWRRRKQSHSF 237


>gi|303231325|ref|ZP_07318060.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514005|gb|EFL56012.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
          Length = 861

 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 4/163 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+E+TG D+  DRI++I A+ +         F+ F+ P     S    +L     + 
Sbjct: 495 VVYDVESTGTDTTEDRIVQIAAMRIDKDGNEIERFERFINPG---KSVGTSQLVHGFTDA 551

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
              +   S             N   + HN  +D+  ++ EL R N        + DTL I
Sbjct: 552 YLAEHGESPKVVLEAFKEFSNNRIIVGHNVNYDISILSHELARHNLGEPQFKAVYDTLDI 611

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            RR +P+  N       +Y   I+H   H A+ D      + I
Sbjct: 612 FRRFYPTLENHKLGFLSKY-FPINHTPTHNAMDDIIATGQLLI 653


>gi|269302439|gb|ACZ32539.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Chlamydophila pneumoniae LPCoLN]
          Length = 249

 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 5/170 (2%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E TGLD K DRIIEI AV     S  + + +  + P  R  S E+ ++H I++  L+
Sbjct: 12  LDCEMTGLDVKKDRIIEIAAVRFTFDSVIS-SIEFLINPE-RVVSAESQRVHHISNAMLR 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D+P  + +F +   FF E +   + H+  FD+  ++ E++RI +  L    IIDTL +A+
Sbjct: 70  DQPKIAEVFPQIKAFFKEGDYI-VGHSVGFDLQVLSQEMERIGETFLSKYTIIDTLRLAK 128

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
               S  N L SL   + +       H A+ D  +  +++  +      +
Sbjct: 129 EYGDSPNNSLESLAVHFNVPY--DGNHRAMKDVEININIFKHLCKRFRTL 176


>gi|332534627|ref|ZP_08410459.1| ribonuclease T [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035907|gb|EGI72388.1| ribonuclease T [Pseudoalteromonas haloplanktis ANT/505]
          Length = 234

 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 73/186 (39%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++EI A  +++ D      + T    + P  G      A+  +G
Sbjct: 19  VVIDVETAGFNKETDALLEIAASVLKMDDEGLLSIDHTVHFHVQPFEGANIEQAAIDFNG 78

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +       +  +       Q +  +AHNA FD GF+NA ++R N  
Sbjct: 79  IDPFSPLRGAVPEDEVIKEICKVVRKAQKAAGCQRSVIVAHNAAFDHGFLNAAIERNNIK 138

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + +       +  L   C+  GI   +   H AL D+   +++Y  ++ 
Sbjct: 139 RTPFHPFVSFDTTSLAGLALGQTVLAKACRAAGIEFDNSQAHSALYDTERTAELYCLIVN 198

Query: 177 GGSQIN 182
              Q+ 
Sbjct: 199 RWQQLG 204


>gi|262193953|ref|YP_003265162.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077300|gb|ACY13269.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 4/117 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNG-RKNSPEALKLHGITD 67
           +  D ETTGLD +   I+EI A+ +   +       V  + P       PEAL+++G   
Sbjct: 5   VFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERALVLRVRPERLEDADPEALEVNGYRR 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
               D  S     SE         A    HN  FD  F+ A    +   P +     
Sbjct: 65  RAWADAVSLGDAMSELAPMLEG--AVLAGHNVAFDRSFLEAAWDYVGHRPENLDHHA 119


>gi|182624633|ref|ZP_02952415.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
 gi|177910237|gb|EDT72625.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
          Length = 876

 Score = 58.4 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 4/166 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             IVFD+E+TG+D   D II+I A++L    +    F+ FL     K   +         
Sbjct: 509 NIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLK---NKKPVKDSYYVHGFS 565

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +                +++  + HN ++D+  + +EL+R N          DTL
Sbjct: 566 DEMLQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYDTL 625

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            I RR +P + N       +      H+  H A+ D     ++ ++
Sbjct: 626 DIYRRFYPGNINYKLENLSKV-YDTKHKPSHDAMDDIIATGELLVR 670


>gi|162447750|ref|YP_001620882.1| DNA polymerase III subunit epsilon [Acholeplasma laidlawii PG-8A]
 gi|161985857|gb|ABX81506.1| DNA polymerase III, epsilon subunit [Acholeplasma laidlawii PG-8A]
          Length = 227

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 6/179 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV---ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + +VFD ETTGL  K D++IE+GAV   ++ D  +  +     +             L G
Sbjct: 7   KILVFDFETTGLTPKRDKVIEVGAVLLEKIGDTYEIVQEIDYLIKQQTPITD-FISNLTG 65

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E L              D   +++   +A+N  FD+GF++A  Q            I
Sbjct: 66  ITNEMLARDGVEEEYAFRQLDNLIDEDTLLVAYNLAFDIGFLSALYQTYVAHNYKIQNDI 125

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                  +      + L +   R+ ++  +   H A  D+     V   +    + +  
Sbjct: 126 LDCMAVYKDRYPYPHKLENAVARFELS--NNQAHRASEDAKATFKVLDCLASEENNLKL 182


>gi|73662598|ref|YP_301379.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642618|sp|Q49XR1|DING_STAS1 RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|72495113|dbj|BAE18434.1| putative ATP-dependent DNA helicase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 900

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +      T+   +     +  P    L  I ++
Sbjct: 6   YAVVDLETTGNQLDYDEIIQIGITFVRENKIIG-TYHSMIK-TDLEIPPFIQALTSIEED 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  I  + +   +     ++AHN  FD+ FI    ++ + +      +     
Sbjct: 64  MLNQAPYFHEIAEDIYKQIDG--CIFVAHNVAFDLNFIKKSFKQCHINYRPKKVMDTLEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       L+ L + +G  I   + H A  D+   + + I        +   
Sbjct: 122 FKVAFPTDKSYQLSELAEAHG--IILNNAHRADEDAATTAQLMIIAFEKFESLPLD 175


>gi|15618565|ref|NP_224851.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
           CWL029]
 gi|15836187|ref|NP_300711.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138]
 gi|16752385|ref|NP_444644.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39]
 gi|33242012|ref|NP_876953.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
           TW-183]
 gi|4376954|gb|AAD18794.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029]
 gi|8163364|gb|AAF73628.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila
           pneumoniae AR39]
 gi|8979027|dbj|BAA98862.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138]
 gi|33236522|gb|AAP98610.1| DNA polymerase III [Chlamydophila pneumoniae TW-183]
          Length = 249

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 5/170 (2%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E TGLD K DRIIEI AV     S  + + +  + P  R  S E+ ++H I++  L+
Sbjct: 12  LDCEMTGLDVKKDRIIEIAAVRFTFDSVIS-SIEFLINPE-RVVSAESQRVHHISNAMLR 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D+P  + +F +   FF E +   + H+  FD+  +  E++RI +  L    IIDTL +A+
Sbjct: 70  DQPKIAEVFPQIKAFFKEGDYI-VGHSVGFDLQVLAQEMERIGETFLSKYTIIDTLRLAK 128

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
               S  N L SL   + +       H A+ D  +  +++  +      +
Sbjct: 129 EYGDSPNNSLESLAVHFNVPY--DGNHRAMKDVEININIFKHLCKRFRTL 176


>gi|47096482|ref|ZP_00234074.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254899404|ref|ZP_05259328.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes J0161]
 gi|254912457|ref|ZP_05262469.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818]
 gi|254936784|ref|ZP_05268481.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900]
 gi|284802344|ref|YP_003414209.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5578]
 gi|284995486|ref|YP_003417254.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5923]
 gi|47015135|gb|EAL06076.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258609379|gb|EEW21987.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900]
 gi|284057906|gb|ADB68847.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5578]
 gi|284060953|gb|ADB71892.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5923]
 gi|293590439|gb|EFF98773.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818]
          Length = 928

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + R IV D+ETTG  + + DRII+  A  +    +   T+  FL P  +       +L 
Sbjct: 2   KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           GI+ + +K+ P F  +     +   +    ++AHN  FD  F+  E+
Sbjct: 60  GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104


>gi|157413038|ref|YP_001483904.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9215]
 gi|157387613|gb|ABV50318.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9215]
          Length = 248

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 70/230 (30%), Gaps = 12/230 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + ++ D ETTGLD   D +IEIG +          +  +F   +  N  +          
Sbjct: 26  KILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNNEAEQVNGISADVT 85

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
              +  +D  +F     ++ DF        +AHN +FD  +               S   
Sbjct: 86  NISQPWEDGLNFFLKLVDYSDFI-------VAHNVEFDKKWFGKGRLPKLNKKWICSLED 138

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVGGSQIN 182
              S  +           +L     +   HR+       S +        ++++  ++  
Sbjct: 139 INWSFQKSLKNRPSVTDLALSFSIPVWNLHRALSDCFYISEVFKKCDNLEELLLKATEPR 198

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           F +K       +   K                ++T  E    D  ++ L 
Sbjct: 199 FLYKALVSYEERSLAKNAGFRWNSHVQGAWSKKLTPNEAKNLDFRVEILN 248


>gi|206890301|ref|YP_002247886.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742239|gb|ACI21296.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 230

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 8/181 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D E TGL+   D II IGA+++     K    F   + P+ +K   E++ +H IT 
Sbjct: 24  FVVVDTELTGLNEFRDNIIAIGAIKMKGRTIKIGDIFYRTVSPSTKKFRKESIMIHEITP 83

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L+  P    I  EF      +N   + H    D+ F+  E++   ++  +P  I   L
Sbjct: 84  SELEKCPQIEPILREFIK--FSKNCLVVGHCVDIDLTFLKKEIRNNLREIFEPFSIDTLL 141

Query: 128 SIARRKHPSSRNDLNSLCKRYGI-----TISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
                          S             I  +  H AL D+ + + ++ +++    ++ 
Sbjct: 142 IYKWLIKKEILPSDFSNKNSLEDIALSLDIEPKELHDALSDAFITAQIFQRLLAYLGELK 201

Query: 183 F 183
            
Sbjct: 202 I 202


>gi|320096178|ref|ZP_08027770.1| DNA polymerase III PolC [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319976891|gb|EFW08642.1| DNA polymerase III PolC [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 210

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 56/177 (31%), Gaps = 3/177 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGL  +   I EIGA+ +      +  F+  + P+              TD 
Sbjct: 19  WLVVDVETTGLG-RACEITEIGALRMRGTQVVDE-FEELVRPSAPIPPFIEKMTGITTDM 76

Query: 69  FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                P          W          +AHNA FD+GF+    +  +     P  +    
Sbjct: 77  VAGADPVQAVYPRFAAWAGAGAPGRVLVAHNADFDMGFLARAARACSMPWRTPPSVDTLS 136

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       +            +    H AL D+    +V   +    ++  FG
Sbjct: 137 LARLALPRPVVANHRLGTVARHFRTATAPGHRALGDARATGEVLCGLAGLAAEAGFG 193


>gi|298498457|ref|ZP_07008264.1| gp39 [Vibrio cholerae MAK 757]
 gi|297542790|gb|EFH78840.1| gp39 [Vibrio cholerae MAK 757]
          Length = 188

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+ D ETTGLDS   RI+E+  ++        + +   + P     SPE   +HGIT++ 
Sbjct: 13  IILDTETTGLDSD-ARILEVSIIDAQTGI---KLYSSLVNP-LCSISPEVTAIHGITNDM 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+F  ++++   + ++  +    +N  FD       L+       +          
Sbjct: 68  VIDMPTFDKVWNDIKGYLSD--SVIYVYNLDFDYRMFAQSLRPFGYPVANLVHFFGGGVC 125

Query: 130 ARRKH 134
             R +
Sbjct: 126 VMRWY 130


>gi|168485959|ref|ZP_02710467.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1087-00]
 gi|183570911|gb|EDT91439.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1087-00]
          Length = 1463

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSVFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|254827216|ref|ZP_05231903.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165]
 gi|258599599|gb|EEW12924.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165]
          Length = 928

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + R IV D+ETTG  + + DRII+  A  +    +   T+  FL P  +       +L 
Sbjct: 2   KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           GI+ + +K+ P F  +     +   +    ++AHN  FD  F+  E+
Sbjct: 60  GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104


>gi|51969194|dbj|BAD43289.1| unknown protein [Arabidopsis thaliana]
          Length = 316

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 61/181 (33%), Gaps = 13/181 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D+ETTGL  +N+RIIEI A ++     +  TFQ  + P     +   +         
Sbjct: 112 IVSDLETTGLHRENERIIEIAAQDIAGGGYS--TFQTLVNPGVVPITNAHIHGIRNDMVC 169

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124
             + P    +   F  +   +         +AHN K                 +  + ++
Sbjct: 170 RPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNWLL 229

Query: 125 DTLSIARRKHPSSRNDLNSLCK------RYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                  R++  S      L         Y         H AL D  LLS V+ K+ +  
Sbjct: 230 LDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLTIDL 289

Query: 179 S 179
            
Sbjct: 290 K 290


>gi|332359968|gb|EGJ37782.1| DNA polymerase III PolC [Streptococcus sanguinis SK1056]
          Length = 866

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            +++      +  EF +F  +  +  +AHNA FDVGF+N   +R     +       ++ 
Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
                 ++        +   +  +   H + + A     LL      +       N    
Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T+       +K  V + ++  +++
Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624


>gi|325978714|ref|YP_004288430.1| ATP-dependent DNA helicase DinG [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178642|emb|CBZ48686.1| ATP-dependent DNA helicase DinG [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 827

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 8/181 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++ N  +  + D+E TG  +    II++G V + +     +T+Q  + P+    S   +
Sbjct: 1   MMQVNSQKYAIVDLEATGAHAM-AEIIQVGIVIIENDEIV-KTYQTDVNPHEA-LSEHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITDE L   P FS +  E +    +    ++AHN KFD   +    Q   +     
Sbjct: 58  NLTGITDEQLAKAPDFSQVAQEVFSLIED--CVFVAHNVKFDANLLA--EQLFMEGYELR 113

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  +DT+ +A+  +P+             + +     H A+ D++  + +++K+      
Sbjct: 114 TPRVDTVELAQVFYPTFEKYSL-GNLADALALDLADAHTAISDAYATTQLFLKLKAKMKS 172

Query: 181 I 181
           +
Sbjct: 173 L 173


>gi|262194078|ref|YP_003265287.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077425|gb|ACY13394.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 4/117 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNG-RKNSPEALKLHGITD 67
           +  D ETTGLD +   I+EI A+ +   +       V  + P       PEAL+++G   
Sbjct: 5   VFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVNGYRR 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
               D  S     +E         A    HN  FD  F+ A    +   P +     
Sbjct: 65  RAWADAVSLGDAMAELAPMLEG--AVLAGHNVAFDRRFLEAAWDCVGHRPENLDHHA 119


>gi|223043083|ref|ZP_03613130.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus capitis SK14]
 gi|222443294|gb|EEE49392.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus capitis SK14]
          Length = 900

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 6/178 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + D+ETTG     D II+IG   + ++     T+   +     +  P    L  I ++
Sbjct: 6   YAIVDLETTGNQLDYDEIIQIGITFVRNHKII-DTYHSMIR-TDLEIPPFIQALTSIEED 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ +  + +D   +    ++AHN  FD+ FI       +        +     
Sbjct: 64  MLAQAPYFNEVAEDIYDQIKD--CIFVAHNISFDLNFIKNAFNNCDIQFKPKKVMDTLEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                       L+ L + +   I     H A  D+   + + IK       +    +
Sbjct: 122 FKIAFPTDKSYQLSELAQAH--DIPLDKAHRADEDATTTAKLMIKAFKKFESLPLDTQ 177


>gi|224500250|ref|ZP_03668599.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes Finland 1988]
 gi|254831500|ref|ZP_05236155.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 10403S]
          Length = 928

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + R IV D+ETTG  + + DRII+  A  +    +   T+  FL P  +       +L 
Sbjct: 2   KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           GI+ + +K+ P F  +     +   +    ++AHN  FD  F+  E+
Sbjct: 60  GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104


>gi|226942744|ref|YP_002797817.1| DNA polymerase III subunit epsilon [Azotobacter vinelandii DJ]
 gi|226717671|gb|ACO76842.1| DNA polymerase III, epsilon subunit [Azotobacter vinelandii DJ]
          Length = 240

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLC 49
          R +V D+ETTGL+ + D ++ IGAV + + +   +R F+  L 
Sbjct: 43 RFVVLDLETTGLNVERDVVLSIGAVLIENDAIDLSRQFECTLR 85


>gi|154496866|ref|ZP_02035562.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC
           29799]
 gi|150273824|gb|EDN00937.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC
           29799]
          Length = 191

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 8/173 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I FD+ET   +  NDR+  IG   +         +   + P  R      + L GIT 
Sbjct: 4   RYIAFDVET--PNYANDRMSAIGITVVEAGEIAGE-YYTLVNPEQR-FDRFNIALTGITP 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + DKP+F  ++ E     +      IAHNA FD+  +   L+          R   T 
Sbjct: 60  EMVADKPTFPELWREIGPLMDS--GLLIAHNAPFDMSVLAKCLRDYGICWHPTVRYACTC 117

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++RR  P   N   +    Y         H A  DS    ++ +  + GG+ 
Sbjct: 118 QMSRRLLPQLPNHKLNTLSDY--LGLELDHHHAGSDSMACGEILLYHLRGGAS 168


>gi|86143556|ref|ZP_01061941.1| nuclease subunit Cho of the excinuclease complex (UvrC-like
           protein) [Leeuwenhoekiella blandensis MED217]
 gi|85830003|gb|EAQ48464.1| nuclease subunit Cho of the excinuclease complex (UvrC-like
           protein) [Leeuwenhoekiella blandensis MED217]
          Length = 519

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 80/232 (34%), Gaps = 23/232 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  + D+ETTG   K ++I EI  + L +  + NR F   + P GR+      KL GI D
Sbjct: 49  KFAIIDVETTGGGIKGNKITEICIIVLQEGKEINR-FASLVNP-GREIPLYIEKLTGIND 106

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++D P F  +  +       Q+  ++AHN  FD   + AE +    D          L
Sbjct: 107 RMVEDAPYFDELAPQIDA--LTQDCIFVAHNVGFDYNVVRAEFKEAGLDFNRKRLCTVRL 164

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +            L +LC    I      +H A  D+     ++ + +    +       
Sbjct: 165 AKKLIPG-LFSYSLGNLCTSINIPHY--DRHRATGDTEATVILFQRCLDLDPEY------ 215

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
                  E  +   N    +   P   + +  E   H       +      +
Sbjct: 216 -------EVIQGFLNRKSKESYFPPHFKASDFEELPHKAGVYFFKDKNGKPL 260


>gi|330965486|gb|EGH65746.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 237

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 66/200 (33%), Gaps = 6/200 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ET+GL+   D+++ IGAV + D +    + F+   L  + + +    +     
Sbjct: 42  RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVLIHGLAP 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +      +P  + +            +  +  +A FD   +   L+      L  +    
Sbjct: 102 SAIAAGSEPVEALLDFME----FVGESPILGFHAPFDQHMLGRALKESLDYRLQHAFFDA 157

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     ++              +    +H A  D+ + +++ + +     +     
Sbjct: 158 AEIAPMLCEQANLRHAGLDDWTQFFGLHAEERHNASADALVTAELALILFSHARRQQIDS 217

Query: 186 KTNEDRFFKEEKKTVPNISL 205
                    + ++   + S 
Sbjct: 218 PVRLAESLGKWRRRKQSHSF 237


>gi|226224503|ref|YP_002758610.1| ATP-dependent helicase [Listeria monocytogenes Clip81459]
 gi|254825606|ref|ZP_05230607.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194]
 gi|225876965|emb|CAS05674.1| Putative ATP-dependent helicase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|293594849|gb|EFG02610.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194]
 gi|328466248|gb|EGF37405.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 1816]
          Length = 928

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + R IV D+ETTG  + + DRII+  A  +    +   T+  FL P  +       +L 
Sbjct: 2   KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           GI+ + +K+ P F  +     +   +    ++AHN  FD  F+  E+
Sbjct: 60  GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104


>gi|123968212|ref|YP_001009070.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. AS9601]
 gi|123198322|gb|ABM69963.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. AS9601]
          Length = 259

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 71/230 (30%), Gaps = 12/230 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + ++ D ETTGLD   D +IEIG +          +  +F   +  N  ++         
Sbjct: 37  KILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNNEAEHVNGISAEVT 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
              +  +D  +F     +  DF        +AHN +FD  +               S   
Sbjct: 97  NISQPWEDGLNFFLKLVDSSDFI-------VAHNVEFDKKWFGKGRLPKLNKKWICSLED 149

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVGGSQIN 182
              S  +           +L     +   HR+       S +        ++++  ++  
Sbjct: 150 INWSFQKSLKTRPSVTDLALSFSIPVWNLHRALSDCFYLSEVFKKCDNLEELLLKATEPR 209

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           F +K       +   K                ++T +E    D  ++ L 
Sbjct: 210 FLYKALVSYEDRSLPKNAGFKWNSPVQGAWSRKLTTDEAKNLDFRVEILN 259


>gi|16803938|ref|NP_465423.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes EGD-e]
 gi|224501301|ref|ZP_03669608.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes FSL R2-561]
 gi|16411352|emb|CAC99977.1| dinG [Listeria monocytogenes EGD-e]
          Length = 928

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + R IV D+ETTG  + + DRII+  A  +    +   T+  FL P  +       +L 
Sbjct: 2   KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           GI+ + +K+ P F  +     +   +    ++AHN  FD  F+  E+
Sbjct: 60  GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104


>gi|213967758|ref|ZP_03395905.1| exonuclease [Pseudomonas syringae pv. tomato T1]
 gi|301382395|ref|ZP_07230813.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13]
 gi|302061212|ref|ZP_07252753.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40]
 gi|302132416|ref|ZP_07258406.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213927534|gb|EEB61082.1| exonuclease [Pseudomonas syringae pv. tomato T1]
          Length = 237

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 62/179 (34%), Gaps = 6/179 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ET+GL+   D+++ IGAV + D +    + F+   L  + + +    +     
Sbjct: 42  RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKLSPAVLIHGLAP 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +      +P  + +           ++  +  +A FD   +   L+      L  +    
Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLARALKESLDYRLQHAFFDA 157

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                     ++              +    +H A  D+ + +++ + +     +    
Sbjct: 158 AEIAPMLCEQANLRHAGLDDWTQFFGLHAEERHNASADALVTAELTLILFSHARRQQID 216


>gi|212634649|ref|YP_002311174.1| ribonuclease T [Shewanella piezotolerans WP3]
 gi|212556133|gb|ACJ28587.1| Ribonuclease T [Shewanella piezotolerans WP3]
          Length = 235

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 77/210 (36%), Gaps = 13/210 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIG--AVELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +SK D ++EI    +++ D      ++T    + P  G    PEAL  +G
Sbjct: 24  VVIDVETAGFNSKTDALLEIAVTMLKMDDDGVLQLDKTLHYHIEPFEGANLEPEALAFNG 83

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +         +  +AHNA FD GF++  ++R    
Sbjct: 84  IDPTNPLRGAVSEKEAFLEIFKEVKKAQKASECHRSIIVAHNAAFDHGFVSEAIERNGLK 143

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI   +R  H AL D+   ++++  ++ 
Sbjct: 144 RTPFHPFATFDTAALAGLAIGQTVLAKACAMAGIPFDNREAHSALYDTERTAELFCLIVN 203

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
               +       ++   + E     ++  +
Sbjct: 204 RWKSLGGWPYIADESDPEAEDVAEADVKPI 233


>gi|47094224|ref|ZP_00231936.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858]
 gi|47017396|gb|EAL08217.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858]
          Length = 618

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + R IV D+ETTG  + + DRII+  A  +    +   T+  FL P  +       +L 
Sbjct: 2   KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           GI+ + +K+ P F  +     +   +    ++AHN  FD  F+  E+
Sbjct: 60  GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104


>gi|294675436|ref|YP_003576052.1| exonuclease [Prevotella ruminicola 23]
 gi|294473646|gb|ADE83035.1| exonuclease [Prevotella ruminicola 23]
          Length = 163

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 66/170 (38%), Gaps = 8/170 (4%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR     D ET   +++   +  +G V + +      TF   + P     +    ++HG+
Sbjct: 1   MRDFAAIDFET--ANNERTSVCSVGVVIVRNGEIV-DTFYSLIQPEPNYYNYWCSQVHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + E  +D P F  ++ +     +      +AHN  FD   + A  +    D  D      
Sbjct: 58  SREDTEDAPVFPEVWKQIEPLIDG--LPLVAHNKSFDESCLKAVFRCYQMDYPDYPFYCT 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++  +       + L+++ +  G      + H AL D+   + +  +++
Sbjct: 116 CVASRKAFPQLPNHQLHTVSEYCG--YHLENHHHALADAEACAWIAREIL 163


>gi|319788791|ref|YP_004090106.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
 gi|315450658|gb|ADU24220.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
          Length = 177

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 9/173 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R IVFD+ET   +  N+R+  IG   + + + T   F  ++ P          +L GI  
Sbjct: 3   RYIVFDVET--PNRYNNRMSAIGIAVIENGAVTEEYF-SYVDPQT-YFDRFNTQLTGINK 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P+F  ++       +       AHNA FD+G +   L+    +  +  +   T+
Sbjct: 59  YTVSGAPTFPELWERIEPIMSS--GVLAAHNAVFDLGVLKKCLKAYGIEWKNTVKYCCTV 116

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            + RR  P   + LN LC+ YG        H A  DS   +D+ ++    G+Q
Sbjct: 117 QMGRRVLPGISHKLNVLCEHYG---IALDHHKADSDSRACADILLRYFESGAQ 166


>gi|254852803|ref|ZP_05242151.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503]
 gi|300763791|ref|ZP_07073788.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017]
 gi|258606130|gb|EEW18738.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503]
 gi|300515527|gb|EFK42577.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017]
          Length = 928

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + R IV D+ETTG  + + DRII+  A  +    +   T+  FL P  +       +L 
Sbjct: 2   KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           GI+ + +K+ P F  +     +   +    ++AHN  FD  F+  E+
Sbjct: 60  GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104


>gi|46908132|ref|YP_014521.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes serotype 4b str. F2365]
 gi|46881402|gb|AAT04698.1| ATP-dependent helicase DinG [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 928

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + R IV D+ETTG  + + DRII+  A  +    +   T+  FL P  +       +L 
Sbjct: 2   KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           GI+ + +K+ P F  +     +   +    ++AHN  FD  F+  E+
Sbjct: 60  GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104


>gi|330967688|gb|EGH67948.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 203

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 3/168 (1%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RVAVIDFETTGISPSPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF           +             +  ++      ++  
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 120

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +           L S  +      +HR+   A + ++L + +  ++
Sbjct: 121 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 168


>gi|157364228|ref|YP_001470995.1| DNA polymerase III, epsilon subunit [Thermotoga lettingae TMO]
 gi|157314832|gb|ABV33931.1| DNA polymerase III, epsilon subunit [Thermotoga lettingae TMO]
          Length = 188

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 10/167 (5%)

Query: 13  DIETTGLDS-KNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDEFL 70
           D ETTG+D    DRI+E+  V +       R+ +   + P  R       K+H IT+E +
Sbjct: 12  DTETTGIDPMNGDRIVEVAIVPVYKGRILYRSIYHTLVNPKIR-IPATIEKIHRITNEDI 70

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ P+   +F +   F       +            +     I+   +            
Sbjct: 71  ENAPTIEQVFGQMRSFMRRSIMIF-------HRAEFDLTFIDISAKEIGIFPPSIDYIDT 123

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           R        +  +L          +  H AL D+   + +++KM   
Sbjct: 124 REISEIIFGEKKALSWLAERFGFEKPNHRALTDAITTAKLFLKMTRK 170


>gi|254931930|ref|ZP_05265289.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262]
 gi|293583482|gb|EFF95514.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262]
          Length = 928

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + R IV D+ETTG  + + DRII+  A  +    +   T+  FL P  +       +L 
Sbjct: 2   KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           GI+ + +K+ P F  +     +   +    ++AHN  FD  F+  E+
Sbjct: 60  GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104


>gi|228476288|ref|ZP_04060989.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis
           SK119]
 gi|314936052|ref|ZP_07843401.1| exonuclease [Staphylococcus hominis subsp. hominis C80]
 gi|228269571|gb|EEK11077.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis
           SK119]
 gi|313655869|gb|EFS19612.1| exonuclease [Staphylococcus hominis subsp. hominis C80]
          Length = 185

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 71/197 (36%), Gaps = 12/197 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++ +    I  D ET   + K   I  +G V+++D      TF   + P+    S   +
Sbjct: 1   MVKNS---FIALDFET--ANKKRTSICSVGMVKVVDNEIV-ETFYTLVNPHD-YFSETHI 53

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI  + +KD P F  +F     F        +AHNA FD+G ++  L+ +N      
Sbjct: 54  HVHGIHPKDVKDAPDFKEVFPYMLQFI--NQLPVVAHNAAFDMGVLHQSLKHLNIAVPSL 111

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +         R                    ++    H AL D+   + +  +++     
Sbjct: 112 TYFCSYQLARRTIKAYRYGL---KHLMNHYNLNFHGHHDALNDAKACAMITYRLLKHYDS 168

Query: 181 INFGFKTNEDRFFKEEK 197
           +    + +        +
Sbjct: 169 LQSVLQFHGKNLKDRNR 185


>gi|206889195|ref|YP_002247891.1| DNA polymerase III PolC-type, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741133|gb|ACI20190.1| DNA polymerase III PolC-type, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 225

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D E TGLD KND II IGA+ + +        F   L P  +    +A+ +H +T 
Sbjct: 20  FVVIDTELTGLDEKNDSIISIGAITMRERSILIGDIFYRILNPQCKPKD-KAVLIHKLTS 78

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAE 93
             L+  P    I  EF DF   +   
Sbjct: 79  TELEQCPDIKLILKEFIDFIKNRPIV 104


>gi|91216678|ref|ZP_01253643.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC
           700755]
 gi|91185147|gb|EAS71525.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC
           700755]
          Length = 1452

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 73/231 (31%), Gaps = 21/231 (9%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSP 57
            I+FD ETTGL  + +          R I+I   V     +         + P G     
Sbjct: 2   YIIFDTETTGLPKRWNAPITDTDNWPRAIQIAWQVHDEWGNLVKAK-DYLIRPEGFDIPY 60

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +A ++HGI+      K     +    ++    ++   +  N  FDV  + AE  R   + 
Sbjct: 61  DAERIHGISTALALQKGESLDMVLAEFNEALSESKFVVGQNVGFDVNVMGAEFHRAQLES 120

Query: 118 LDPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLS 168
           L  S  +      +                    +   +Y         H A  D    +
Sbjct: 121 LMASMPVLDTCTEKTAKLCQIPGGRGGKFKLPTLTELHQYLFGQPFNEAHNATADVEATT 180

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
             +++++  G+      +       + + +    +S +  +     + + +
Sbjct: 181 RCFLELIRTGNYTENELQAERSYLQEFKSRHTGPLSKVGLNHINLKKASAQ 231


>gi|15891836|ref|NP_357508.1| DNA polymerase III subunit epsilon [Agrobacterium tumefaciens str.
           C58]
 gi|15160320|gb|AAK90293.1| polymerase epsilon subunit [Agrobacterium tumefaciens str. C58]
          Length = 326

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 68/207 (32%), Gaps = 16/207 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGLD + D IIEIG +     D         ++  L   G     +  +L GI
Sbjct: 74  VILDTETTGLDHRTDEIIEIGVITFTFDDQGAIGDVTGIYGGLRQPGVAIPEDITRLTGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +  +    SI               IAHNA FD  F  A                 
Sbjct: 134 TDEMVAGQ----SIDMMRLTSLIAHADLIIAHNAGFDRPFCEAFSPIFRDKAW------- 182

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             S++         + N L    G +      H A+ D   L +V ++    G  I    
Sbjct: 183 ACSVSEIDWRVRGFEGNKLGYLIGQSGYFHDGHRAVDDCFALLEV-LEQRRSGQNITPFA 241

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPL 212
           +  E       +    N     +D   
Sbjct: 242 ELYEASGRSRVRIYAENSPFDMKDHLK 268


>gi|306831779|ref|ZP_07464935.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304425977|gb|EFM29093.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 827

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 8/181 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++ N  +  + D+E TG  +    II++G V + +     +T+Q  + P+    S   +
Sbjct: 1   MMQVNSQKYAIVDLEATGAHAM-AEIIQVGIVIIENDEIV-KTYQTDVNPHEA-LSEHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITDE L   P FS +  E +    +    ++AHN KFD   +    Q   +     
Sbjct: 58  NLTGITDEQLAKAPDFSQVAQEVFSLIED--CVFVAHNVKFDANLLA--EQLFMEGYELR 113

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  +DT+ +A+  +P+             + +     H A+ D++  + +++K+      
Sbjct: 114 TPRVDTVELAQVFYPTFEKYSL-GNLADALALDLADAHTAISDAYATAQLFLKLKAKMKS 172

Query: 181 I 181
           +
Sbjct: 173 L 173


>gi|262194028|ref|YP_003265237.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077375|gb|ACY13344.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 4/117 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNG-RKNSPEALKLHGITD 67
           +  D ETTGLD +   I+EI A+ +   +       V  + P       PEAL+++G   
Sbjct: 5   VFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVNGYRR 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
               D  S     +E         A    HN  FD  F+      +   P       
Sbjct: 65  RAWADAVSLGDAMAELAPMLEG--AVLAGHNVAFDRRFLEVAWDCVGHRPETLDHHA 119


>gi|119472859|ref|ZP_01614766.1| ribonuclease T [Alteromonadales bacterium TW-7]
 gi|119444691|gb|EAW25998.1| ribonuclease T [Alteromonadales bacterium TW-7]
          Length = 227

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 78/208 (37%), Gaps = 13/208 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIG--AVELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++EI    +++ D      ++T    + P  G      A++ +G
Sbjct: 19  VVIDVETAGFNKETDALLEIAVSVLKMDDDGLLSIDQTVHFHVEPFEGANIEQAAIEFNG 78

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +       +  +       Q +  +AHNA FD GF+NA ++R N  
Sbjct: 79  IDPFSPLRGAVAEEEAIKEICKVVRKAQKAAGCQRSVIVAHNAAFDHGFLNAAIERNNIK 138

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   +         +  L   C+  GI   +   H AL D+   +++Y  ++ 
Sbjct: 139 RTPFHPFVSFDTTTLAGLALGQTVLAKACRAAGIEFDNSQAHSALYDTERTAELYCLIVN 198

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNIS 204
              ++        D    +E    P  +
Sbjct: 199 RWQELGGWPLAPLDESGDDEAAKEPKTT 226


>gi|153838933|ref|ZP_01991600.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149747604|gb|EDM58532.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 236

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 4/167 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTG+D++ D+I+ IG V+L LD      + + ++C         A        
Sbjct: 52  FVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYICHGQFIKPETAKINGLTPQ 111

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +  K  P      +   +    +         +          +   +D          +
Sbjct: 112 DLAKGLP-LDEGMNRLLERITGKVVLAHGCCIEKAFIHAYFSSRYQVEDFPAYFIDTLQI 170

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYI 172
                    S    +                 H A  D+   +++++
Sbjct: 171 EKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAELFL 217


>gi|145298879|ref|YP_001141720.1| DNA polymerase III subunit epsilon [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851651|gb|ABO89972.1| DNA polymerase III, epsilon subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 208

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 7/174 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I  D ETT LD     I+ IGAV +  +   T     + +       + +++ +HG+  +
Sbjct: 32  IALDFETTSLDPARAEIVSIGAVRIKGNRILTGEALSLRVQ-APASLNAQSVVIHGLRHQ 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID--- 125
            L+      +   +   F   +    + ++  +D+  +N   Q+     L    I     
Sbjct: 91  DLQQGMRLEAALRQLLAFIGPRE--LVGYHIAYDLRILNLACQKQWGLTLAQQGIEVSRL 148

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                 R++P +  DL+    R  + +     H AL D+   + +Y+++  GG 
Sbjct: 149 YHDHLYRRYPDAVIDLHLAAIRQHLNLPSLPVHDALSDAITAALIYLRLTQGGP 202


>gi|254227511|ref|ZP_04920943.1| exonuclease family [Vibrio sp. Ex25]
 gi|262396223|ref|YP_003288076.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|151940123|gb|EDN58949.1| exonuclease family [Vibrio sp. Ex25]
 gi|262339817|gb|ACY53611.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
          Length = 236

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 4/167 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTG+D++ D+I+ IG V+L LD      + + ++C         A        
Sbjct: 52  FVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYICHGQFIKPETAKINGLTPQ 111

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +  K  P      +   +    +         +          +   +D          +
Sbjct: 112 DLAKGLP-LDEGMNRLLERITGKVVLAHGCCIEKAFIHAYFSSRYQVEDFPAYFIDTLQI 170

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYI 172
                    S    +                 H A  D+   +++++
Sbjct: 171 EKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAELFL 217


>gi|327390689|gb|EGE89029.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA04375]
          Length = 1463

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GYPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185
                    R+ L  L KR+G+     H + + A     LL     ++       +    
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +       +K  + + ++  +++     I
Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631


>gi|293372861|ref|ZP_06619235.1| exonuclease [Bacteroides ovatus SD CMC 3f]
 gi|292632150|gb|EFF50754.1| exonuclease [Bacteroides ovatus SD CMC 3f]
          Length = 266

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 8/190 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG +   DRI+EI  +++  + ++  +T +  + P        +  +HGI D  
Sbjct: 18  FFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTLR--INPEMH-IPEASSAIHGIYDAD 74

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+F  +           +      N           L+      +   + +D   I
Sbjct: 75  VVDCPTFKEVAKNIARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMTKRKFVDVQVI 134

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +          S   ++    +    H A  D+    +V    +   S +        
Sbjct: 135 FHK----MEQRTLSAAYKFYCDKNLEDAHTAEADTRATYEVLKAQLDRYSDLQNDIAFLA 190

Query: 190 DRFFKEEKKT 199
           D     +   
Sbjct: 191 DYSSFSKNVD 200


>gi|300773503|ref|ZP_07083372.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300759674|gb|EFK56501.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 469

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 86/219 (39%), Gaps = 18/219 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG  + N  I EI A+ L D  +   ++Q  + P+ ++       L GIT E
Sbjct: 13  YAIVDIETTGGYAANSGITEI-AIYLHDGHQIIDSYQTLINPH-KEIPYHIQMLTGITPE 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D PSF  + ++ + F   +N  ++AHN  FD  F+ A L+        P        
Sbjct: 71  MLTDAPSFEDVAADIYSFL--ENKVFVAHNVNFDYSFVYAHLKACGYQWKSPKLCT-VRL 127

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG---- 184
                   S   L +LC+R    I    +H A  D+     ++ +++   +         
Sbjct: 128 ARNIFKGFSSYSLGNLCQRL--DIPISDRHRAAGDAKATVILFERILSHDTNGLIDSFLQ 185

Query: 185 -------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                    T+ D+   E     P I + K +K     +
Sbjct: 186 THAKEQLLPTHIDKVVFERLPAKPGIYIFKNNKGKIIYV 224


>gi|284037590|ref|YP_003387520.1| exonuclease RNase T and DNA polymerase III [Spirosoma linguale
          DSM 74]
 gi|283816883|gb|ADB38721.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale
          DSM 74]
          Length = 205

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGI 65
          M  +V D+E TG +   + II+IGAV   D       +   + P  +   S  + K+H +
Sbjct: 1  MPFLVLDLEMTGPEPDYNEIIQIGAVLFDDNWVERGQYLTNVYPENKDAFSSSSEKIHNL 60

Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQ 90
          +   L+D P    +  E  ++   Q
Sbjct: 61 SLAELEDAPMIYDVLPEMEEWICTQ 85


>gi|225856031|ref|YP_002737542.1| DNA polymerase III PolC [Streptococcus pneumoniae P1031]
 gi|225725805|gb|ACO21657.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae P1031]
          Length = 1463

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GYPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185
                    R+ L  L KR+G+     H + + A     LL     ++       +    
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +       +K  + + ++  +++     I
Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631


>gi|187932518|ref|YP_001886209.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           B str. Eklund 17B]
 gi|187720671|gb|ACD21892.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           B str. Eklund 17B]
          Length = 243

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 78/227 (34%), Gaps = 16/227 (7%)

Query: 7   MRKIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KN 55
           M  IV+D+E    + +             II+IGAV+L +  +   TF   + P    + 
Sbjct: 1   MNYIVYDLE---FNHQYSKDNKVSNLTFEIIQIGAVKLNNKLEIVSTFNRLIKPTVHTEI 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
            P    L  IT E +  +  FS ++++F  F   +               +         
Sbjct: 58  HPFIKDLTQITTEMVNSEKHFSDVYNDFIKFIGNKEFTVCIWGTSDIKELLKNVKFHNLK 117

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             D L     +  L+    K P            +      +  H A  D++  + ++ K
Sbjct: 118 EIDDLRKYIDVQNLASKYIKTPKGTKVGLKTAIEFFNLPIEKEFHDAFNDAYYTAQIFKK 177

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           +     + +        R  + ++K      L + +K    ++++EE
Sbjct: 178 LYTSKIKSSIYNNPYSKRISEPKQKVDTKGLLRQFEKMYNRKLSEEE 224


>gi|148996698|ref|ZP_01824416.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70]
 gi|147757273|gb|EDK64312.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70]
          Length = 910

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R +   +    I     
Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581


>gi|314933639|ref|ZP_07841004.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus caprae C87]
 gi|313653789|gb|EFS17546.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus caprae C87]
          Length = 900

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 6/178 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + ++     T+   +     +  P    L  I ++
Sbjct: 6   YAVVDLETTGNQLDYDEIIQIGITFVSNHKII-DTYHSMIR-TDLEIPPFIQALTSIEED 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ +  + +D   +    ++AHN  FD+ FI       +        +     
Sbjct: 64  MLAQAPYFNEVAEDIYDQIKD--CIFVAHNISFDLNFIKNAFNNCDIQFKPKKVMDTLEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                       L+ L + +   I     H A  D+   + + IK       +    +
Sbjct: 122 FKIAFPTDKSYQLSELAQAH--DIPLDKAHRADEDATTTAKLMIKAFKKFESLPLDTQ 177


>gi|242373764|ref|ZP_04819338.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W1]
 gi|242348501|gb|EES40103.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W1]
          Length = 900

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 62/178 (34%), Gaps = 6/178 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +      T+   +     +  P    L  I +E
Sbjct: 6   YAVVDLETTGNQLDYDEIIQIGITFVRNQQII-DTYHSMIR-TDLEIPPFIQALTSIEEE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ +  + ++   +    ++AHN  FD+ FI       N        +     
Sbjct: 64  MLAQAPYFNEVAEDIYNQIKD--CIFVAHNISFDLNFIKNAFDNCNIQFRPKKVMDTLEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                       L+ L + + I     + H A  D+   + + IK       +    +
Sbjct: 122 FKIAFPTDKSYQLSELAQSHNIP--LTNAHRADEDATTTAKLMIKAFEKFENLPLDTQ 177


>gi|261419662|ref|YP_003253344.1| hypothetical protein GYMC61_2250 [Geobacillus sp. Y412MC61]
 gi|319766479|ref|YP_004131980.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y412MC52]
 gi|261376119|gb|ACX78862.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y412MC61]
 gi|317111345|gb|ADU93837.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y412MC52]
          Length = 242

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 48/177 (27%), Gaps = 9/177 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            ++ D+ETTG   +  D I+ + A + +    T   +   + P  +        L GI  
Sbjct: 62  FVIIDMETTGFSPEQGDEILAMAAAKTVGGVVT-DAYMTLVKPE-KPIPEHISALTGIEA 119

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +   P  +     F  F                                  S     L
Sbjct: 120 KDVVFAPPLAEALRTFVPFIAAGVLIGY----HIGHDLAFLRHALWRHYRQKWSGRFVDL 175

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                    S    +     YGI      +H A  D   ++ ++  ++    Q    
Sbjct: 176 QPMMTLIGHSCPTFDDALACYGIRC--PRRHTADGDVEAMAKLWAILLDEFRQRGID 230


>gi|318060238|ref|ZP_07978961.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318076974|ref|ZP_07984306.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
          Length = 647

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 9/175 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+ET+GL ++ DR++ +  V +  D  +T   F   + P      P  + +HG+T E L
Sbjct: 19  VDVETSGLMARRDRVLSVAVVTMGPDGEQTGE-FSTLVDPG---CDPGPVDVHGLTRERL 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P+F  I         +     +AHNA+FD  F+  E  R         R+       
Sbjct: 75  SGAPAFGQIAGRLGAMLQD--RVLVAHNAQFDYDFLAHEFARARLYLPVTRRLCTLALNR 132

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +   P+    L SL   YG+  +    H AL D+ +L+ ++   +   ++++   
Sbjct: 133 QVDPPTRDMKLGSLAAHYGVPRTRA--HDALDDTRVLAGIFRATLREAARLDLPL 185


>gi|262277835|ref|ZP_06055628.1| DNA polymerase III PolC-type (PolIII) [alpha proteobacterium
           HIMB114]
 gi|262224938|gb|EEY75397.1| DNA polymerase III PolC-type (PolIII) [alpha proteobacterium
           HIMB114]
          Length = 223

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 7/177 (3%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGL+    D+II +  V++ ++   T      F  P   + +PE  ++H I++ 
Sbjct: 29  VFDTETTGLNYNSGDKIISVSGVKVQNFQIDTEGKLDEFCDP-MVEITPENEQIHHISNR 87

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTL 127
            +K KP+   + S+F  FF  + +  +AHN KFD  F+ + L     +  +  +  +DT+
Sbjct: 88  MVKGKPNIYDLESKFRGFF--KRSVLVAHNVKFDCNFLISNLSHTKLESRIREAVKLDTV 145

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             +   +P     +L++LC    IT   + +H +L DS + + ++I ++      N 
Sbjct: 146 LYSAGVYPDLKSYELSALCDELNITHHDQLRHSSLGDSIITARLFIHLLKKSKAQNI 202


>gi|331015013|gb|EGH95069.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 222

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 62/179 (34%), Gaps = 6/179 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ET+GL+   D+++ IGAV + D +    + F+   L  + + +    +     
Sbjct: 27  RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKLSPAVLIHGLAP 86

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +      +P  + +           ++  +  +A FD   +   L+      L  +    
Sbjct: 87  SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLARALKESLDYRLQHAFFDA 142

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                     ++              +    +H A  D+ + +++ + +     +    
Sbjct: 143 AEIAPMLCEQANLRHAGLDDWTQFFGLHAEERHNASADALVTAELALILFSHARRQQID 201


>gi|315222325|ref|ZP_07864231.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
 gi|315188658|gb|EFU22367.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
          Length = 1456

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 80/209 (38%), Gaps = 14/209 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 418 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTDLTGITDE 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF DF  +     +AHNA FDVGF+N   +R     +    I     
Sbjct: 476 HVKNAKPLEQVLQEFQDFCQD--TVLVAHNATFDVGFMNVNYERHGLPRITQPVIDTLEF 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R+ L  L KR+ +++ H   H A  D+     +          I       
Sbjct: 534 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLF--------IFINDAAE 583

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
           +      +K     +      K      T
Sbjct: 584 KRGVTNLQKLNTDLVDENSYKKARVKHAT 612


>gi|34556664|ref|NP_906479.1| DNA polymerase III subunit epsilon [Wolinella succinogenes DSM
           1740]
 gi|34482378|emb|CAE09379.1| DNA POLYMERASE III EPSILON SUBUNIT DNAQ [Wolinella succinogenes]
          Length = 206

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  + D+ET G     D+IIEIGA+          +F+ ++    ++      K+ GIT 
Sbjct: 15  RFCIVDVETNGSLPAKDQIIEIGAILYQGGKII-DSFESYV--FCKEVPEYITKITGITS 71

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           E LKD PS   + + F       +A ++AHNA FD GF+ A ++R   D L   ++ 
Sbjct: 72  EELKDAPSMKEVLTRF--RLFLGDAVFVAHNALFDYGFLGAMMKRSGMDRLHNRKLC 126


>gi|319939893|ref|ZP_08014248.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV]
 gi|319810904|gb|EFW07223.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV]
          Length = 1464

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 80/209 (38%), Gaps = 14/209 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 426 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTDLTGITDE 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF DF  +     +AHNA FDVGF+N   +R     +    I     
Sbjct: 484 HVKNAKPLEQVLQEFQDFCQD--TVLVAHNATFDVGFMNVNYERHGLPRITQPVIDTLEF 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    R+ L  L KR+ +++ H   H A  D+     +          I       
Sbjct: 542 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLF--------IFINDAAE 591

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
           +      +K     +      K      T
Sbjct: 592 KRGVTNLQKLNTDLVDENSYKKARVKHAT 620


>gi|332715841|ref|YP_004443307.1| DNA polymerase III subunit epsilon [Agrobacterium sp. H13-3]
 gi|325062526|gb|ADY66216.1| DNA polymerase III subunit epsilon [Agrobacterium sp. H13-3]
          Length = 326

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 71/207 (34%), Gaps = 16/207 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+ + D IIEIG +     D         V+  L   G     E  +L GI
Sbjct: 74  VILDTETTGLNHRTDEIIEIGVITFTFDDQGTIGDVTGVYGGLRQPGTSIPEEITRLTGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +  +    +I  +      E     IAHNA FD  F  A                 
Sbjct: 134 TDEMVAGQ----TIDIDRLTSLVEGADLIIAHNAGFDRPFCEAFSPIFRNKAW------- 182

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             S++         + + L    G +      H A+ D   L +V ++ +  G       
Sbjct: 183 ACSVSEVDWSGRGFEGSKLAYLIGQSGYFHDGHRAVDDCFALLEV-LEQVRAGQSGTPFM 241

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPL 212
           + +E       +    N     +D   
Sbjct: 242 ELHEASQHSRVRIYAENSPFDMKDHLK 268


>gi|308180572|ref|YP_003924700.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308046063|gb|ADN98606.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 934

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 7/176 (3%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V DIETTG   K  DRII+IG   + +      TF   + P           L GI++
Sbjct: 7   YAVVDIETTGTSVKDGDRIIQIGCAFVKNNKII-NTFATDVNP-LTTVPAVIENLTGISN 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  P F  +    +         ++AHN  FD+ FIN+ELQR+    L    +    
Sbjct: 65  ARVRKAPPFDDLAGTVYSLLQG--TVFVAHNVNFDLPFINSELQRVGYPELPIQAVDTVS 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                   +S   L  L     I  +H   H A  D+   + ++I +    + +  
Sbjct: 123 LSQILLPTASSFRLRDLSHLLAIDHNHP--HSADSDAIATAHLFITLQQRLAHLPL 176


>gi|254556626|ref|YP_003063043.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1]
 gi|254045553|gb|ACT62346.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1]
          Length = 934

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 7/176 (3%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V DIETTG   K  DRII+IG   + +      TF   + P           L GI++
Sbjct: 7   YAVVDIETTGTSVKDGDRIIQIGCAFVKNNKII-NTFATDVNP-LTTVPAVIENLTGISN 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  P F  +    +         ++AHN  FD+ FIN+ELQR+    L    +    
Sbjct: 65  ARVRKAPPFDDLAGTVYSLLQG--TVFVAHNVNFDLPFINSELQRVGYPELPIQAVDTVS 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                   +S   L  L     I  +H   H A  D+   + ++I +    + +  
Sbjct: 123 LSQILLPTASSFRLRDLSHLLAIDHNHP--HSADSDAIATAHLFITLQQRLAHLPL 176


>gi|28378418|ref|NP_785310.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1]
 gi|28271254|emb|CAD64158.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1]
          Length = 934

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 7/176 (3%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V DIETTG   K  DRII+IG   + +      TF   + P           L GI++
Sbjct: 7   YAVVDIETTGTSVKDGDRIIQIGCAFVKNNKII-NTFATDVNP-LTTVPAVIENLTGISN 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  P F  +    +         ++AHN  FD+ FIN+ELQR+    L    +    
Sbjct: 65  ARVRKAPPFDDLAGTVYSLLQG--TVFVAHNVNFDLPFINSELQRVGYPELPIQAVDTVS 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                   +S   L  L     I  +H   H A  D+   + ++I +    + +  
Sbjct: 123 LSQILLPTASSFRLRDLSHLLAIDHNHP--HSADSDAIATAHLFITLQQRLAHLPL 176


>gi|302879448|ref|YP_003848012.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
 gi|302582237|gb|ADL56248.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
          Length = 303

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 6/62 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR------TFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++S  D IIE+G V       T        +F     P           
Sbjct: 41  RGVVVDTETTGINSAQDAIIELGMVLFEYDPDTGEAGRVLGSFDQLEDPGMAIPPESTEV 100

Query: 62  LH 63
             
Sbjct: 101 HG 102


>gi|227536604|ref|ZP_03966653.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243681|gb|EEI93696.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 469

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 4/116 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG  + N  I EI A+ L D  +   ++Q  + P+ ++       L GIT E
Sbjct: 13  YAIVDIETTGGYAANSGITEI-AIYLHDGHQVIDSYQTLINPH-KEIPYHIQMLTGITPE 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            L D PSF  + ++ + F   +N  ++AHN  FD  FI A L+        P    
Sbjct: 71  MLTDAPSFEDVAADIYSFL--ENKVFVAHNVNFDYSFIYAHLKACGYQWKSPKLCT 124


>gi|329667930|gb|AEB93878.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii DPC
           6026]
          Length = 320

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 5/170 (2%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
            D+ETTGL    DRI E+G +++        TF   +  P+  K      KL+GI +  +
Sbjct: 36  IDVETTGLSPYRDRITEMGGLKVRHGEVVA-TFSELVKFPDSNKVPAFITKLNGIDEATI 94

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++K        + +  F   +   + +N  FD+ F+    ++ +   L+   +       
Sbjct: 95  EEKGLPVQEAIKKYREFIGSDPI-VGYNVNFDLNFVYDLAEKYHLTVLNNDYVDVYRLAR 153

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                   N L      + + I+   +H  L D      V+ +      Q
Sbjct: 154 SFYPQEQHNRLLDC--MHRLDIAETQEHRGLDDCLDTKKVFDEFHRLFRQ 201


>gi|253688762|ref|YP_003017952.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755340|gb|ACT13416.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 223

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 73/199 (36%), Gaps = 13/199 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++E+ AV L      + + + T    + P  G    P AL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +     N   A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPTNPLRGAVSEYDALHEIFKVVRKGIKEQNCNRAIIVAHNATFDHSFMMAAAERCSLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D++  + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCELVN 199

Query: 177 GGSQINFGFKTNEDRFFKE 195
              ++       E+   ++
Sbjct: 200 RWKRLGGWPIALEENSLED 218


>gi|225850393|ref|YP_002730627.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
 gi|225646485|gb|ACO04671.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
          Length = 206

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 9/172 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD+ETTGLD + D II IGAV++ +      T F   + P  R    E + +H IT   +
Sbjct: 38  FDLETTGLDVEKDEIISIGAVKIKEMKIDLSTSFYRIVKPE-RIPEKENILIHSITASEM 96

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K       +  +F ++        I +   FD+  ++   Q+    P+    I  +    
Sbjct: 97  KKGEDIRDVLPKFLEYIKG--TVLIGYFVSFDISMLSKYTQKFYGFPILNPYIDVSQLYI 154

Query: 131 RRKHPSSRNDLNSLCKRYGI-----TISHRSKHGALLDSHLLSDVYIKMMVG 177
           ++K  S         K          I  R +H AL DS   + +++ +M  
Sbjct: 155 KKKVKSYTPYEKIKEKSLDQIAEELNIPVRKRHNALYDSITTALIFLSLMKR 206


>gi|206580062|ref|YP_002238188.1| ribonuclease T [Klebsiella pneumoniae 342]
 gi|288935177|ref|YP_003439236.1| ribonuclease T [Klebsiella variicola At-22]
 gi|290509235|ref|ZP_06548606.1| ribonuclease T [Klebsiella sp. 1_1_55]
 gi|206569120|gb|ACI10896.1| ribonuclease T [Klebsiella pneumoniae 342]
 gi|288889886|gb|ADC58204.1| ribonuclease T [Klebsiella variicola At-22]
 gi|289778629|gb|EFD86626.1| ribonuclease T [Klebsiella sp. 1_1_55]
          Length = 215

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +   +  +     +   A  +AHNA FD  F     +R    
Sbjct: 80  INPHDPERGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACIAAGMAFDGAQAHSALYDTEQTAQLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|117621105|ref|YP_856588.1| DNA polymerase III subunit epsilon [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562512|gb|ABK39460.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 208

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 3/173 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD     I+ IGAV +  +   T     + +       S  ++ +HG+  
Sbjct: 31  WVALDFETTSLDPAQAEIVAIGAVRIQGNRVLTGEALSIRVQ-APASLSEHSVVIHGLRH 89

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDT 126
           + L+   +  +       F   +             +         +             
Sbjct: 90  QDLQQGMTLEAALRLLLAFIGPRELVGYHIAYDLRILNLACQRCWGLTLAQRGIEVSRLY 149

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                R++P +  DL+       I +     H AL D+   + +++++  GG 
Sbjct: 150 HDHLYRRYPDAAIDLHLAAISSHIGLPTLPAHDALSDAITAALIFLRLTRGGP 202


>gi|295693033|ref|YP_003601643.1| ATP-dependent DNA helicase ding [Lactobacillus crispatus ST1]
 gi|295031139|emb|CBL50618.1| ATP-dependent DNA helicase DinG [Lactobacillus crispatus ST1]
          Length = 926

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 7/169 (4%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   +    II+ G   + +     +T+   + P+ R+     + L GI D
Sbjct: 10  FAVVDLETTGTQRENGHHIIQFGCAIIKNLKVV-KTYSFLINPH-REIPQSVVNLTGIHD 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +  F     +       QN  ++AHN  FD+ F+N EL +   + L    I    
Sbjct: 68  QDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEALTNKAIDTVE 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKM 174
                        L+ L  + GI     H++   A   + LL +++ K+
Sbjct: 126 LAKIAFPTFPSYKLSDLTTQLGIKHLDPHKADSDAYGTAVLLLEIFNKL 174


>gi|126667590|ref|ZP_01738560.1| exonuclease [Marinobacter sp. ELB17]
 gi|126628016|gb|EAZ98643.1| exonuclease [Marinobacter sp. ELB17]
          Length = 232

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 4/177 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D+ETTGL+   D++I IGAV + +     +  F + L         + + +HGI 
Sbjct: 37  RLIVLDLETTGLNPAKDQMIAIGAVAINNNAMPLDDQFDLILRRPELDI-RKTVLIHGIG 95

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E L              D+ N                      +    +      + + 
Sbjct: 96  PEALTAGHETEDALLHLLDWMNGDPILAYHSAFDQKFLEKTLRAELGYGENHIWLDVAEL 155

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +          R  L++    +G+     ++H A  D+ + +++ +  +   +Q   
Sbjct: 156 MPAFFPTANKQRKGLDNWADTFGLQ--ASARHHAAADAMVTAELTLIALNKAAQQGI 210


>gi|120553834|ref|YP_958185.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
 gi|120323683|gb|ABM17998.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
          Length = 235

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 4/174 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D+ETTGL++  D +I IGAV +       N  F + L         E + +HGI 
Sbjct: 40  RLIVLDLETTGLNASKDEVIAIGAVAIEGGVIHLNDQFDLILRRPELDI-RETVLIHGIG 98

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E L              ++ N                    + Q     P     + + 
Sbjct: 99  PEALTQGYETQDALLYLLEWMNGDPILAYHSAFDQKFLEKTLKSQLGYTLPHVWMDVAEL 158

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +     K       L+     +G+ I    +H A  D+ + +++ +  +    +
Sbjct: 159 MPAFFPKATIKGRGLDDWADVFGLEI--SERHHAAADALVTAELALIALNKARK 210


>gi|113460646|ref|YP_718712.1| ribonuclease T [Haemophilus somnus 129PT]
 gi|123327179|sp|Q0I251|RNT_HAES1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|112822689|gb|ABI24778.1| RNAse T [Haemophilus somnus 129PT]
          Length = 218

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 70/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G +++ D ++E+ A+ L    +     +      + P  G   +PE+LK +G
Sbjct: 24  VIIDVETAGFNAQTDALLELAAITLKMDENGLLVPDEKCHFHIQPFEGANINPESLKFNG 83

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                  +        + Q +  +AHNA FD  F+ A  +R    
Sbjct: 84  IDIDNPLRGAISENVAMSELFKMVRHGQKKADCQRSVIVAHNATFDQSFVMAAAERTKIK 143

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I+   +  H AL D+   ++++  M+ 
Sbjct: 144 RNPFHPFSIFDTATLSGFMFGQTVLVKGCQVANISFDGKKAHSALYDAERTAELFCYMVN 203

Query: 177 GGSQIN 182
              ++ 
Sbjct: 204 HLKKLG 209


>gi|213609103|ref|ZP_03368929.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 89

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 158 HGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
           HGALLD+ +L++VY+ M  G + + F  +    R   E         + +  +      +
Sbjct: 8   HGALLDAQILAEVYLAMTGGQTSMTFAMEGETQRQQGEATIQRI---VRQASRLRVVFAS 64

Query: 218 KEELDEHDKTIQTLGKN---AIWD 238
           +EEL  H+  +  + K     +W 
Sbjct: 65  EEELAAHESRLDLVQKKGGSCLWR 88


>gi|150005410|ref|YP_001300154.1| DNA Pol III epsilon chain [Bacteroides vulgatus ATCC 8482]
 gi|212694908|ref|ZP_03303036.1| hypothetical protein BACDOR_04445 [Bacteroides dorei DSM 17855]
 gi|237727134|ref|ZP_04557615.1| DNA Pol III epsilon chain [Bacteroides sp. D4]
 gi|265750418|ref|ZP_06086481.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_33FAA]
 gi|294777188|ref|ZP_06742645.1| exonuclease [Bacteroides vulgatus PC510]
 gi|319640629|ref|ZP_07995346.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_40A]
 gi|149933834|gb|ABR40532.1| DNA Pol III epsilon chain [Bacteroides vulgatus ATCC 8482]
 gi|212662468|gb|EEB23042.1| hypothetical protein BACDOR_04445 [Bacteroides dorei DSM 17855]
 gi|229433990|gb|EEO44067.1| DNA Pol III epsilon chain [Bacteroides dorei 5_1_36/D4]
 gi|263237314|gb|EEZ22764.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_33FAA]
 gi|294449057|gb|EFG17600.1| exonuclease [Bacteroides vulgatus PC510]
 gi|317387750|gb|EFV68612.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_40A]
          Length = 258

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 62/172 (36%), Gaps = 8/172 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +   DRI+EI  +++  + ++  +T  + + P       ++  +HGI D 
Sbjct: 10  VFFDLETTGTNINTDRIVEICYLKVYPNGNEETKT--MRINPEMH-IPEQSSAIHGIYDA 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +  E        +      N           L+      +   + ID   
Sbjct: 67  DVADCPTFKEVAKEIARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMMKRKFIDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           I  +          S   ++    +    H A  D+    +V    +    +
Sbjct: 127 IYHK----LEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLKSQLDRYPE 174


>gi|146299070|ref|YP_001193661.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
 gi|146153488|gb|ABQ04342.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
          Length = 1510

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 71/230 (30%), Gaps = 19/230 (8%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R I+I      +  +        + P G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPITDSDNWPRCIQIAWQLHDEMGQLIEHQDYLVKPEGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A ++HGI+ E  +      +   E ++    +    +  N  FDV  + AE  R+  +  
Sbjct: 62  AERIHGISTELAEADGITLAEVLEKFNIALSKTKFIVGQNLGFDVNIMGAEFHRMGVESQ 121

Query: 119 DPSRIIDTLSIARRKHP---------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             S  +                      +    +    Y         H A  D    + 
Sbjct: 122 MASMPVLDTCTEVTASLLQLPGGRGGKFKLPTLTELHSYLFDQPFAEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +++++             ++ F + +++      L+          + +
Sbjct: 182 CFLELVRREVFTKEELDVPKEYFKEFQERNAEPFKLIGLKHINLKAASDK 231


>gi|241896118|ref|ZP_04783414.1| DNA-directed DNA polymerase III epsilon subunit [Weissella
           paramesenteroides ATCC 33313]
 gi|241870632|gb|EER74383.1| DNA-directed DNA polymerase III epsilon subunit [Weissella
           paramesenteroides ATCC 33313]
          Length = 970

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 2/166 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETT   S++ RII+I    + +       F   + P+        ++L GI  E
Sbjct: 34  YAVVDLETTRTTSESGRIIQIAIAFVQNKKII-NQFSTLINPH-ESIPRNVVQLTGINAE 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   PSF  +                  N          +   +N   L     +    
Sbjct: 92  MVAGAPSFEEVAESIHTMLTGTIFVAHNVNFDLPFLNAEFQRIGMNTLNLVAIDTVTLSQ 151

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           I     P  R    +          H++   AL  + LL  ++ ++
Sbjct: 152 IVWPTAPGFRLVDLTSYLALVHGRPHQADSDALATAELLIQIFNRL 197


>gi|157962392|ref|YP_001502426.1| ribonuclease T [Shewanella pealeana ATCC 700345]
 gi|157847392|gb|ABV87891.1| ribonuclease T [Shewanella pealeana ATCC 700345]
          Length = 232

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 73/213 (34%), Gaps = 13/213 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIG--AVELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI    +++ D      ++T    + P  G    PEAL   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAVSMLKMDDEGVLALDKTLHFNIEPFEGANLEPEALAFTG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +         +  +AHNA FD GF+   ++R    
Sbjct: 80  IDPTSPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVTQAIERNALK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A          L   C   GI   +R  H AL D+   ++++  ++ 
Sbjct: 140 RTPFHPFATFDTAALAGLAIGHTVLAKACAMAGIPFDNREAHSALYDTERTAELFCLIVN 199

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
               +       ++    +   +        ++
Sbjct: 200 RWKALGGWPFIADETEEADTNSSEEKAEDYTKN 232


>gi|293396307|ref|ZP_06640585.1| ribonuclease T [Serratia odorifera DSM 4582]
 gi|291421096|gb|EFE94347.1| ribonuclease T [Serratia odorifera DSM 4582]
          Length = 226

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIET G +++ D ++EI AV L      + + + T    + P  G    PEAL  +G
Sbjct: 31  VVIDIETAGFNARTDALLEIAAVTLKMDQDGWLQQDETLHFHVEPFEGANLQPEALAFNG 90

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +         A  +AHNA FD  F+ A  +R    
Sbjct: 91  IDPHNPLRGAVSEYDALHAIFKAVRKGIKDQGCNRAIIVAHNANFDHSFLMAAAERAGLK 150

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   G+       H AL D+   + ++ +++ 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACIAAGMAFDSSQAHSALYDTEQTALLFCELVN 210

Query: 177 GGSQIN 182
              ++ 
Sbjct: 211 RWKRLG 216


>gi|330829910|ref|YP_004392862.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565]
 gi|328805046|gb|AEB50245.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565]
          Length = 208

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 54/168 (32%), Gaps = 1/168 (0%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           ++  D ETT LD +   I+ IGAV +  +   T     + + P         +       
Sbjct: 31  QVALDFETTSLDPEQAEIVSIGAVRIQGNRLLTGEALAIKVQPPASLTGQSVVIHGLRHQ 90

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +  +     +++          +   +        +     +L  +              
Sbjct: 91  DLQQGMTLEAALRLLLHFIGPRELVGYHVAYDLRILNLACQKLWELTLPQRGIEVSQLYH 150

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               R++P +  DL+       + +     H AL D+   + +Y+++ 
Sbjct: 151 DHLYRRYPDAAIDLHLSAICSHLELPSLPAHDALADATTAALIYLRLT 198


>gi|300811276|ref|ZP_07091776.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497736|gb|EFK32758.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 290

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 70/185 (37%), Gaps = 19/185 (10%)

Query: 3   RKNKMR----------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
           +  +MR           +  DIETTGL++++D+I+ IGAV+          F   +    
Sbjct: 110 KAERMRVSVAATKQKDFVAVDIETTGLNTESDQILSIGAVK-----HDGTEFYRLIK-QD 163

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
                + ++L GIT   L                F       + +N +FD  F+N E ++
Sbjct: 164 IDVPKQIVELTGITPAMLDKDGVPLQDVLGELTDFVGDVPI-VGYNFRFDSAFLNREYRK 222

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                L          + R++       L ++   YGI       H A+ D+    ++ +
Sbjct: 223 CGMQELKNEIKDLLPVVKRKEKFLDNYKLQTVLSNYGIENKVP--HNAVSDARATKELAM 280

Query: 173 KMMVG 177
           K++  
Sbjct: 281 KLIKN 285


>gi|300722831|ref|YP_003712123.1| RNase T [Xenorhabdus nematophila ATCC 19061]
 gi|297629340|emb|CBJ89939.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Xenorhabdus nematophila ATCC 19061]
          Length = 211

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 67/200 (33%), Gaps = 13/200 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A+ L    +       T    + P  G    P AL   G
Sbjct: 12  VVIDVETAGFNARTDALLEIAAITLKMDENGWLMPADTLHFHVDPFEGANLDPAALAFTG 71

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +   +  +     N   A  +AHNA FD  F+ A  +R    
Sbjct: 72  IDPTNPLRGAVSEYTALHAIFKMIRKGMKDTNCNRAIMVAHNASFDHNFVMAAAERSGLK 131

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +         + A       +  L   C    I       H AL D+   + ++ +++ 
Sbjct: 132 RIPFHPFATFDTAALSGLVLGQTILAKACITAEIPFDSDQAHSALYDTDRTALLFCELVN 191

Query: 177 GGSQINFGFKTNEDRFFKEE 196
              ++      + D      
Sbjct: 192 RWKRLGGWPLASADSAGDAS 211


>gi|307545334|ref|YP_003897813.1| ribonuclease T [Halomonas elongata DSM 2581]
 gi|307217358|emb|CBV42628.1| ribonuclease T [Halomonas elongata DSM 2581]
          Length = 221

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 67/188 (35%), Gaps = 15/188 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D I+EI AV L          + T+   + P  G      AL   G
Sbjct: 20  VVVDLETGGFNAKGDAILEIAAVTLTMDPEGNLMPDATYAYHVTPFEGANVEQSALDFTG 79

Query: 65  ITDEFLKDKP----------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           I  +    +                  +         A  + HNA FD GF+NA ++R  
Sbjct: 80  IRLDDPLRRQVAVSEAEALGEIFRPVRKAIKAHGCTRAILVGHNAAFDHGFLNAAVERCA 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                        + +       +  L   C+  GI   + + H A  D+   ++++  M
Sbjct: 140 IKRNPFHPFSSFDTASLAGLIYGQTVLARACRAAGIEFDNGAAHSARYDTERTAELFCAM 199

Query: 175 MVGGSQIN 182
           +     + 
Sbjct: 200 INRYKDLG 207


>gi|170727084|ref|YP_001761110.1| ribonuclease T [Shewanella woodyi ATCC 51908]
 gi|169812431|gb|ACA87015.1| ribonuclease T [Shewanella woodyi ATCC 51908]
          Length = 222

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 73/201 (36%), Gaps = 13/201 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIG--AVELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI    +++ D      ++T    + P  G    PEAL   G
Sbjct: 22  VVIDVETAGFNAQTDALLEIAVTMLKMDDEGILSLDKTLHFHIEPFEGANLEPEALAFTG 81

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +         +  +AHNA FD GF++  ++R    
Sbjct: 82  IDPTNPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVSQAIERCALK 141

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A          L   C   GI   +   H AL D+   ++++  ++ 
Sbjct: 142 RTPFHPFATFDTAALSGLALGHTVLAKACAIAGIPFDNSEAHSALYDTERTAELFCLIVN 201

Query: 177 GGSQINFGFKTNEDRFFKEEK 197
               +       ++   +E++
Sbjct: 202 RWKALGGWPIAIDEESKEEQE 222


>gi|313123567|ref|YP_004033826.1| 3'-5' exonuclease with to crispr-associated protein [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280130|gb|ADQ60849.1| 3'-5' exonuclease with to CRISPR-associated protein [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 290

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 19/185 (10%)

Query: 3   RKNKMR----------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
           +  +MR           +  DIETTGL++++D+I+ IGAV+          F   +    
Sbjct: 110 KAERMRASVAATKQKDFVAVDIETTGLNTESDQILSIGAVK-----HDGTEFYRLIK-QD 163

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
                + ++L GIT   L  +             F       + +N +FD  F+N E ++
Sbjct: 164 IDVPKQIVELTGITPAMLDKEGVPLQDVLGELTDFVGDVPI-VGYNFRFDSAFLNREYRK 222

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                L          + R++       L ++   YGI       H A+ D+    ++ +
Sbjct: 223 CGMQELKNEIKDLLPVVKRKEKFLDNYKLQTVLSNYGIENKVP--HNAVSDARATKELAM 280

Query: 173 KMMVG 177
           K++  
Sbjct: 281 KLIKN 285


>gi|288905684|ref|YP_003430906.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gallolyticus UCN34]
 gi|288732410|emb|CBI13982.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gallolyticus UCN34]
          Length = 834

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 8/181 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++ N  +  + D+E TG  +    II++G V + +     +T+Q  + P+    S   +
Sbjct: 8   MMQVNSQKYAIVDLEATGAHAM-AEIIQVGIVIIENDEIV-KTYQTDVNPHEA-LSEHII 64

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITDE L   P FS +  E +    +    ++AHN KFD   +    Q   +     
Sbjct: 65  NLTGITDEQLAKAPDFSQVAQEVFSLIED--CVFVAHNVKFDANLLA--EQLFMEGYELR 120

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  +DT+ +A+  +P+             + +     H A+ D++  + +++K+      
Sbjct: 121 TPRVDTVELAQVFYPTFEKYSL-GNLADALALDLADAHTAISDAYATAQLFLKLKAKMKS 179

Query: 181 I 181
           +
Sbjct: 180 L 180


>gi|78779006|ref|YP_397118.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9312]
 gi|78712505|gb|ABB49682.1| DNA polymerase III, epsilon subunit [Prochlorococcus marinus str.
           MIT 9312]
          Length = 259

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 73/230 (31%), Gaps = 12/230 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + ++ D ETTGLD   D +IEIG +          +  +F + +  N  ++         
Sbjct: 37  KILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLLPVNNNEAEHVNCISAEVT 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
              +  +D  +F     +  DF        +AHN +FD  +       +       S   
Sbjct: 97  NISQPWEDGLNFFLKLVDCSDFI-------VAHNVEFDKKWFGKGRLPMLNKKWICSLDD 149

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVGGSQIN 182
              S  +           +L     +   HR+       S +        ++++  ++  
Sbjct: 150 INWSFQKSLKTRPSVTDLALSFSIPVWNLHRALSDCFYISEVFKKCDNLEELLLKATEPR 209

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           F +K       +   K                ++T +E    D  ++ L 
Sbjct: 210 FLYKALVSYEDRSLAKNAGFRWNSPVQGAWSRKLTTDEAKNLDFRVEILN 259


>gi|56419989|ref|YP_147307.1| hypothetical protein GK1454 [Geobacillus kaustophilus HTA426]
 gi|56379831|dbj|BAD75739.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 242

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 48/177 (27%), Gaps = 9/177 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            ++ D+ETTG   +  D I+ + A + +    T   +   + P  +        L GI  
Sbjct: 62  FVIIDMETTGFSPEQGDEILAMAAAKTVGGVVT-DAYMTLVKPE-KPIPEHISALTGIEA 119

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +   P  +     F  F                                  S     L
Sbjct: 120 KDVVFAPPLAEALRTFVPFIAAGVLIGY----HIGHDLAFLRHALWRHYRQKWSGRFLDL 175

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                    S    +     YGI      +H A  D   ++ ++  ++    Q    
Sbjct: 176 QPMMTLIGHSCPTFDDALACYGIRC--PRRHTADGDVEAMAKLWAILLDEFRQRGIE 230


>gi|240173340|ref|ZP_04751998.1| DNA polymerase III subunit epsilon [Mycobacterium kansasii ATCC
           12478]
          Length = 329

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 72/201 (35%), Gaps = 7/201 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII I  + L    +  ++    L P      P +  +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISIAVLGLDADGRVEQSLVSLLNPG---VDPGSTHIHGLTAGML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D+P F+ I  +  +         +AHN  FD  F+ AE +    +    + +       
Sbjct: 75  EDQPQFADIVGDVVELLRG--RTLVAHNVAFDYAFLAAEAEMAGAELPVDTVMCTVELSR 132

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R +       L +L   +G+       H A  D+ +L+ V    +    +       +  
Sbjct: 133 RLELGVDNLRLETLAAHWGV--IQERPHDAFDDARVLTGVLAAALERAREREVWLPVHPV 190

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
              +     V +  L      
Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211


>gi|28871797|ref|NP_794416.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28855049|gb|AAO58111.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 204

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 3/168 (1%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 4   RVAVIDFETTGISPNPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF           +             +  ++      ++  
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +           L S  +      +HR+   A + ++L + +  ++
Sbjct: 122 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAIADAEMAANLTAYLTNEL 169


>gi|33151799|ref|NP_873152.1| ribonuclease T [Haemophilus ducreyi 35000HP]
 gi|54036330|sp|Q7VND8|RNT_HAEDU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|33148020|gb|AAP95541.1| ribonuclease T [Haemophilus ducreyi 35000HP]
          Length = 214

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET GL++K D ++E+ A+ +      Y   ++     + P      + ++LK +G
Sbjct: 21  VIIDVETAGLNAKTDALLELAAITVKMDQQGYLVPDQKCHFHIQPFENANINADSLKFNG 80

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                P    +          Q A  +AHNA FD  F+ A ++RIN  
Sbjct: 81  IDIHNPLRGAVAEAIAIPEMFKMVRRAIKEQGCQRAVIVAHNATFDQAFLQAAVKRINAK 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + +       +  L   C+   I    +  H AL D+   ++++  M+ 
Sbjct: 141 RDPFHPFAMFDTASLAGLMYGQTVLVKACQIANIAFDGKQAHSALYDTEKTTELFCAMVN 200

Query: 177 GGSQIN 182
               + 
Sbjct: 201 RLKDLG 206


>gi|302342239|ref|YP_003806768.1| DNA polymerase III, subunit epsilon [Desulfarculus baarsii DSM
           2075]
 gi|301638852|gb|ADK84174.1| DNA polymerase III, epsilon subunit [Desulfarculus baarsii DSM
           2075]
          Length = 240

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 11/182 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+ETTG+D   D ++  GAV L        + F   + P G   +           
Sbjct: 47  FVVLDLETTGVDLARDGVVSAGAVRLRGGRVLLGQYFDEMILPQGEVPASSITIHGLTPQ 106

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                +P                    +AHNA FD+ FI+  ++  +   L    +    
Sbjct: 107 RLAAGRPLAQVFDDLAG---FIGADIVVAHNAGFDLHFIDRHMRAHHGLALQNLALCTLR 163

Query: 128 SIARRKHPSSRNDLNSLCKRY-------GITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                  PS    +     +           +    +H A+ D+ + + ++ +M+    +
Sbjct: 164 LCRALLLPSDPFGVGRHKGQCRLDAIAERFGLDTPQRHTAIGDALVTALIFQRMLAMMEE 223

Query: 181 IN 182
             
Sbjct: 224 RG 225


>gi|305680841|ref|ZP_07403648.1| exonuclease, DNA polymerase III, epsilon subunit family protein
            [Corynebacterium matruchotii ATCC 14266]
 gi|305659046|gb|EFM48546.1| exonuclease, DNA polymerase III, epsilon subunit family protein
            [Corynebacterium matruchotii ATCC 14266]
          Length = 2479

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 9    KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
              V D+ETTG  +  DRI+E+  V L D  +    +   + P  R  S  A+      D 
Sbjct: 2085 YAVVDVETTGFSTA-DRIVELAIVVLDDDGENLYEWSTLINP-MRDISNGAIHGITAKDV 2142

Query: 69   FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
                 P+F  +  +           ++AHNA FDV  
Sbjct: 2143 A--VAPTFDQVADDVAALLEG--KIFVAHNAIFDVRM 2175


>gi|227878664|ref|ZP_03996579.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01]
 gi|256850383|ref|ZP_05555811.1| ATP-dependent DNA helicase [Lactobacillus crispatus MV-1A-US]
 gi|262046469|ref|ZP_06019431.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           crispatus MV-3A-US]
 gi|227861728|gb|EEJ69332.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01]
 gi|256712780|gb|EEU27773.1| ATP-dependent DNA helicase [Lactobacillus crispatus MV-1A-US]
 gi|260573340|gb|EEX29898.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           crispatus MV-3A-US]
          Length = 926

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 7/169 (4%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   +    II+ G   + +     +T+   + P+ R+     + L GI D
Sbjct: 10  FAVVDLETTGTQRENGHHIIQFGCAIIKNLKVV-KTYSFLINPH-REIPQSVVNLTGIHD 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +  F     +       QN  ++AHN  FD+ F+N EL +   + L    I    
Sbjct: 68  QDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEALTNKAIDTVE 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKM 174
                        L+ L  + GI     H++   A   + LL +++ K+
Sbjct: 126 LAKIAFPTFPSYKLSDLTTQLGIKHLDPHKADSDAYGTAVLLLEIFNKL 174


>gi|225021279|ref|ZP_03710471.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC
            33806]
 gi|224946012|gb|EEG27221.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC
            33806]
          Length = 2493

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 9    KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
              V D+ETTG  +  DRI+E+  V L D  +    +   + P  R  S  A+      D 
Sbjct: 2099 YAVVDVETTGFSTA-DRIVELAIVVLDDDGENLYEWSTLINP-MRDISNGAIHGITAKDV 2156

Query: 69   FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
                 P+F  +  +           ++AHNA FDV  
Sbjct: 2157 A--VAPTFDQVADDVAALLEG--KIFVAHNAIFDVRM 2189


>gi|308049484|ref|YP_003913050.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
 gi|307631674|gb|ADN75976.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
          Length = 249

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTG++   D II IG V       +   +    + PN R  + E++ +HGIT 
Sbjct: 59  FVALDFETTGMNPDQDAIISIGLVPFTQQRIQCKGSAHWIVNPN-RPLNEESVVIHGITH 117

Query: 68  EFLKDKP 74
             L+  P
Sbjct: 118 SDLEQAP 124


>gi|308190354|ref|YP_003923285.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
 gi|307625096|gb|ADN69401.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
          Length = 1461

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 2/188 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FDIETTGL  +   IIE G++ +    K  R  Q F+                    
Sbjct: 426 YVSFDIETTGLCPRFAEIIEYGSLPIHSNMKYGRKTQFFIKCQEPIKPFTENLTGITNAM 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             K          + ++  N      +AHNA+FD  F+  + ++   +  + + I   + 
Sbjct: 486 IEKSGLELKEALQKIYNDLNG--KIALAHNARFDFNFLKEKFRQAKIEFPNVTVIDTLIV 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  + ++ L  +  R G+       H    D+ +L++V++ +M    +        
Sbjct: 544 SRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDYDAKVLAEVWVALMDELGKKGILTFNQ 603

Query: 189 EDRFFKEE 196
            + + K++
Sbjct: 604 LNSYIKDD 611


>gi|312110613|ref|YP_003988929.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y4.1MC1]
 gi|311215714|gb|ADP74318.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y4.1MC1]
          Length = 245

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 8/175 (4%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + D+ETTG   +  D I+ + A + +       T+   +CP  +   P    L GIT + 
Sbjct: 66  IIDMETTGFSPQHGDEILAMAAAKTV-RGAVKETYYTLVCPE-KAIPPHISALTGITAKD 123

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P        F  F +      I ++   D+ F+N  L    +              
Sbjct: 124 VQYAPRLHEAMRSFLSFISG--GVMIGYHIGHDLSFLNHFLWTHYRTKWAARFFDMQPIA 181

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
              +        ++L       IS   +H A  D   +++++ +++    + N  
Sbjct: 182 EMVQRRWFPTLDDAL---GHYGISCERRHTADGDVWAMAELWAQLLAELKRNNIE 233


>gi|127512449|ref|YP_001093646.1| ribonuclease T [Shewanella loihica PV-4]
 gi|126637744|gb|ABO23387.1| RNAse T [Shewanella loihica PV-4]
          Length = 257

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 73/208 (35%), Gaps = 13/208 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI    +++ D      ++T    + P  G    PEAL  +G
Sbjct: 40  VVIDVETAGFNAQTDALLEIAVTLLKMDDNGDLVLDKTLHYHIEPFEGANLEPEALAFNG 99

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +     N   +  +AHNA FD GF+   ++R    
Sbjct: 100 IDPSNPLRGAVSEKEAFLEIFKEVKKHQKASNCHRSIIVAHNAAFDHGFVTQAIERNALK 159

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A          L   C+  GI   ++  H AL D+   ++++  ++ 
Sbjct: 160 RTPFHPFATFDTAALSGLALGHTVLAKACEIAGIPFDNKEAHSALYDTERTAELFCHIVN 219

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNIS 204
               +              ++      S
Sbjct: 220 KWKALGGWPVATPSEETGSDEAASEPAS 247


>gi|330983976|gb|EGH82079.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 551

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 5/121 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNR-TFQVFLCPNGRKNS-PEALKL 62
           R  VFD ETTGL + +D+I++   V L    +    +     V + P+   +    A+  
Sbjct: 7   RLCVFDTETTGLSAHHDQIVQFAGVGLDPELNIIPGDEIVLDVLMRPDVVPSPGAFAVTG 66

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             I+       P F +       F  ++      +N +     +       N        
Sbjct: 67  ISISHLMQHGIPEFEAAGHIRNWFMRQEGTNITGYNTQRFDDEVIRNTFYRNMIDPYQHE 126

Query: 123 I 123
            
Sbjct: 127 W 127


>gi|29346773|ref|NP_810276.1| DNA Pol III epsilon chain [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338670|gb|AAO76470.1| DNA Pol III Epsilon Chain [Bacteroides thetaiotaomicron VPI-5482]
          Length = 277

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 66/203 (32%), Gaps = 14/203 (6%)

Query: 4   KNKMR------KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           K +M+       + FD+ETTG +   DRI+EI  +++  + ++  +T  + + P      
Sbjct: 16  KKEMKLNLKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEETKT--MRINPEMH-IP 72

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
             +  +HGI D  + D P+F  +           +      N           L+     
Sbjct: 73  EASSAVHGIYDADVADCPTFKEVAKNVARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDI 132

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +   + +D   I  +          S   ++    S    H A  D+    +V    + 
Sbjct: 133 DMTKRKFVDVQVIFHK----MEQRTLSAAYKFYCEKSLEDAHTAEADTRATYEVLKAQLD 188

Query: 177 GGSQINFGFKTNEDRFFKEEKKT 199
               +        +     +   
Sbjct: 189 RYPDLQNDIAFLAEYSSFTKNVD 211


>gi|116630207|ref|YP_815379.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           ATCC 33323]
 gi|282852827|ref|ZP_06262168.1| exonuclease [Lactobacillus gasseri 224-1]
 gi|116095789|gb|ABJ60941.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus gasseri ATCC 33323]
 gi|282555935|gb|EFB61556.1| exonuclease [Lactobacillus gasseri 224-1]
          Length = 320

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 53/169 (31%), Gaps = 3/169 (1%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ETTGL    DRI E+G +++        TF   +        P  +      DE   
Sbjct: 36  IDVETTGLSPYRDRITEMGGLKVRHGEVVA-TFSELVKFPDSNKVPTFITKLNGIDEAAI 94

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           ++       +         +   + +N  FD+ F+    ++ +   L+   +        
Sbjct: 95  EEKGLPVQEAIKKYREFIGSDPIVGYNVNFDLNFVYDLAEKYHLTVLNNDYVDVYRLARS 154

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                  N L     R  I      +H  L D      V+ +      Q
Sbjct: 155 FYPQERHNRLLDCMHRMNIA--ENQEHRGLDDCLDTKKVFDEFHKLFKQ 201


>gi|293380924|ref|ZP_06626958.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus crispatus 214-1]
 gi|290922499|gb|EFD99467.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus crispatus 214-1]
          Length = 926

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 7/169 (4%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   +    II+ G   + +     +T+   + P+ R+     + L GI D
Sbjct: 10  FAVVDLETTGTQRENGHHIIQFGCAIIKNLKVV-KTYSFLINPH-REIPQSVVNLTGIHD 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +  F     +       QN  ++AHN  FD+ F+N EL +   + L    I    
Sbjct: 68  QDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEALTNKAIDTVE 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKM 174
                        L+ L  + GI     H++   A   + LL +++ K+
Sbjct: 126 LAKIAFPTFPSYKLSDLTTQLGIKHLDPHKADSDAYGTAVLLLEIFNKL 174


>gi|262194304|ref|YP_003265513.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077651|gb|ACY13620.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 4/117 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNG-RKNSPEALKLHGITD 67
           +  D ETTGLD +   I+EI A+ +   +       V  + P       PEAL+++G   
Sbjct: 5   VFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVNGYRR 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
               D  S     +E         A    HN  FD  F+ A    +   P +     
Sbjct: 65  RVWADAVSLGDAMAELAPMLEG--AVLAGHNVAFDRRFLEAAWDYVGHRPENLDHHA 119


>gi|255522480|ref|ZP_05389717.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes FSL J1-175]
          Length = 807

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + R IV D+ETTG  + + DRII+  A  +    +   T+  FL P  +       +L 
Sbjct: 2   KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           GI+ + +K+ P F  +     +   +    ++AHN  FD  F+  E+
Sbjct: 60  GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104


>gi|238026493|ref|YP_002910724.1| exonuclease, DNA polymerase III subunit epsilon family/GIY-YIG
           catalytic domain-containing protein [Burkholderia glumae
           BGR1]
 gi|237875687|gb|ACR28020.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia glumae BGR1]
          Length = 381

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EIG VE+     +  T+   + P  +       +L GITD  +
Sbjct: 21  FVDLETTGGSATEHRITEIGVVEVGPNGVS--TWSSLIDP-CQPIPAFIQQLTGITDAMV 77

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  PSF+SI +  +     +     AHNA FD GF
Sbjct: 78  RGAPSFASIAAALYARLEGRFFI--AHNASFDRGF 110


>gi|213964373|ref|ZP_03392587.1| exonuclease [Capnocytophaga sputigena Capno]
 gi|213952985|gb|EEB64353.1| exonuclease [Capnocytophaga sputigena Capno]
          Length = 164

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 7/166 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +     +  IG V + +      T+   + P     S    ++HG++  
Sbjct: 4   FVALDFET--ANQYRSSVCSIGLVFVENNEIV-DTYYQLIKPAPNFYSYFNTQVHGLSQY 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             ++ P F  +++E      +     +AHN+ FD G +   L                 +
Sbjct: 61  DTENAPLFPEVWTEILPKIKD--LPLVAHNSMFDEGCLREVLAYYALPQHTNPFFCTLRA 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +       + LN++   +G     +  H AL D+   + + +++
Sbjct: 119 ARKSLPQLVNHKLNTVSAYFGFD--LKQHHHALADAEACAHIALEL 162


>gi|71657888|ref|XP_817452.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain
           CL Brener]
 gi|70882645|gb|EAN95601.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
           cruzi]
          Length = 1417

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFDIE+TGL++  D IIEI A           +F   + P  R    E + +H ITD
Sbjct: 774 RLVVFDIESTGLNTATDAIIEIAAW----DPVEATSFSSLVDPE-RSIPQETMAIHHITD 828

Query: 68  EFLKDKPSFSSIFSEFWDFFNE 89
             ++  P    +      +   
Sbjct: 829 GMVRGAPRLPEVTRALARYLRL 850


>gi|315658260|ref|ZP_07911132.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           lugdunensis M23590]
 gi|315496589|gb|EFU84912.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           lugdunensis M23590]
          Length = 893

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 2/165 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + D      T+   +     +  P    L  I ++
Sbjct: 6   YAVVDLETTGNQLDYDEIIQIGITFVRDQKIVG-TYHSMIN-TDVEIPPFIQALTSIEED 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK  P F  +  + +    +        +          +   I+  P      ++   
Sbjct: 64  MLKQAPYFHEVAEDVYKQLKDSVFVAHNVSFDLTFIKKAFKRNHIHFQPKKVIDTVELFK 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           IA     S +    +      +  +HR+   A   + L+   + K
Sbjct: 124 IAFPTDKSYQLSELAEAHHIPLDNAHRADEDATTTAKLMIKAFQK 168


>gi|309799630|ref|ZP_07693854.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302]
 gi|308116752|gb|EFO54204.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302]
          Length = 681

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 6/178 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 426 YVVFDVETTGLSAIYNDLIQVAASKMYKGNIIAE-FDEFINP-GHHLSAFTTELTGITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F  +     +AHNA FDVGF+NA  +R     +    I     
Sbjct: 484 HVKNAKPLVQVLKEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKITQPVIDTLEF 541

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                    R+ L  L KR+G+     H + + A     LL     ++       N  
Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTNLA 599


>gi|307546031|ref|YP_003898510.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
 gi|307218055|emb|CBV43325.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
          Length = 240

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 62/194 (31%), Gaps = 17/194 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
           I +  M  +  D+ETTGLD++   I+ IG V   L            + P  R    E++
Sbjct: 45  IGETPM--VALDMETTGLDARRHAIVSIGVVPFTLGRIALRERRYWIVRPQ-RTLHAESV 101

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-----------GFINAE 109
             H IT   ++  P F  I  +  +    +       + +              G +   
Sbjct: 102 TFHHITHTDIEQAPEFGEILGDLLEVLAGRLVVVHYRHIERLFLDDSVKARLGEGLMFPM 161

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           +  +  +     +            P +   L     RYG+       H AL D+   ++
Sbjct: 162 IDTMAVEARFHRQSWLARFKRWIGRPPASIRLYDSRTRYGLP--LYQGHHALTDALATAE 219

Query: 170 VYIKMMVGGSQINF 183
           +    +    Q   
Sbjct: 220 LLQAQIANHYQPEM 233


>gi|260913082|ref|ZP_05919564.1| ribonuclease T [Pasteurella dagmatis ATCC 43325]
 gi|260632669|gb|EEX50838.1| ribonuclease T [Pasteurella dagmatis ATCC 43325]
          Length = 221

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 70/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G ++K D ++E+ A  V++ D      ++     + P  G   +PE+L+ +G
Sbjct: 28  VIIDVETAGFNAKTDALLELAAITVKMDDNGLLQPDQKCHFHIEPFEGANINPESLQFNG 87

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +     + Q +  +AHNA FD  FI A  +R    
Sbjct: 88  IDIHNPLRGAVSETHAITELFRMVRKGQKDADCQRSIIVAHNAVFDQSFIMAAAERTGVK 147

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    +  H AL D+   ++++  M+ 
Sbjct: 148 RNPFHPFGMFDTATLSGFMLGQTVLVKACQVAKIPFDGKQAHSALYDTERTTELFCYMVN 207

Query: 177 GGSQIN 182
               + 
Sbjct: 208 HLKSLG 213


>gi|256843260|ref|ZP_05548748.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           crispatus 125-2-CHN]
 gi|256614680|gb|EEU19881.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           crispatus 125-2-CHN]
          Length = 926

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 7/169 (4%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   +    II+ G   + +     +T+   + P+ R+     + L GI D
Sbjct: 10  FAVVDLETTGTQRENGHHIIQFGCAIIKNLKVV-KTYSFLINPH-REIPQSVVNLTGIHD 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +  F     +       QN  ++AHN  FD+ F+N EL +   + L    I    
Sbjct: 68  QDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEALTNKAIDTVE 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKM 174
                        L+ L  + GI     H++   A   + LL +++ K+
Sbjct: 126 LAKIAFPTFPSYKLSDLTTQLGIKHLDPHKADSDAYGTAVLLLEIFNKL 174


>gi|262194198|ref|YP_003265407.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077545|gb|ACY13514.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 4/117 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNG-RKNSPEALKLHGITD 67
           +  D ETTGLD +   I+EI A+ +   +       V  + P       PEAL+++G   
Sbjct: 5   VFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVNGYRR 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
               D  S     +E         A    HN  FD  F+ A    +   P +     
Sbjct: 65  RAWADAVSLGDAMAELAPMLEG--AVLAGHNVAFDRRFLEAAWDYVGHRPENLDHHA 119


>gi|254786953|ref|YP_003074382.1| ribonuclease T [Teredinibacter turnerae T7901]
 gi|237685615|gb|ACR12879.1| ribonuclease T [Teredinibacter turnerae T7901]
          Length = 211

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 62/186 (33%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCPNG---------RKNS 56
           ++ D+ET G ++  D ++EI AV L    +     + TF   + P               
Sbjct: 21  VIIDVETGGFNAATDALLEIAAVTLHMDDNGFLQRDETFSFHVEPFEGANIEKAALEFTG 80

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            +                   +   +    +    A  + HNA FD+ F+NA   R +  
Sbjct: 81  IDLESEDREAVPEAIALGDIFAGVRKAVKGYGCNRAVLVGHNAHFDLNFLNAAAARSDIK 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L + CK  G+  S+R  H A  D+   +D++  M+ 
Sbjct: 141 RNPFHPFSCFDTATLCGLIFGHTVLATSCKLAGLEFSNREAHSAAYDAEKTADLFCLMVN 200

Query: 177 GGSQIN 182
               + 
Sbjct: 201 KWKALG 206


>gi|226948601|ref|YP_002803692.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A2 str. Kyoto]
 gi|226844461|gb|ACO87127.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A2 str. Kyoto]
          Length = 855

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 89/213 (41%), Gaps = 11/213 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +VFD+E+TG++   D I++I  +++ +  +   +FQ FL P         +       
Sbjct: 494 NVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIPKKSVGDSYLVH-GFSDQ 552

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              ++  +   +  +F +F  +     + HN  FD+  +N+EL+R++ +  +     DTL
Sbjct: 553 FLKENGENKKVVLKDFLEFIKD--TVIVGHNVTFDISILNSELERLSLEKANFKTYYDTL 610

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF---- 183
            IARR +PS  N       +       +S H A+ D     DV + M+    +       
Sbjct: 611 DIARRFYPSLTNHKLETLSKL-FNTETKSSHDAMDDILATKDVLMAMLKEKVKPTIINRM 669

Query: 184 ---GFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
              G    +     EE   +  +S +K  K + 
Sbjct: 670 VVYGKYIKKFEPIYEEITNLKKLSYIKNPKDII 702


>gi|187780046|ref|ZP_02996519.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
           15579]
 gi|187773671|gb|EDU37473.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
           15579]
          Length = 855

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 4/176 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +VFD+E+TG+++  D I++I  +++ +  +    F+ FL P         +       
Sbjct: 494 NVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIEKFERFLTPKKYVGDSYLVHGFSDQF 553

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              K +     +          ++   I HN  FD+  +N+ELQR+  +  +     DTL
Sbjct: 554 LKEKGEDKERVLKDFLE---FVKDTVVIGHNITFDITILNSELQRLGLEKANFKTYYDTL 610

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            IARR +PS  N       +       +S H A+ D     DV + M+    +   
Sbjct: 611 DIARRFYPSLTNHKLETLSKL-FNTETKSSHDAMDDILATKDVLMVMLKEKVEPTI 665


>gi|326800451|ref|YP_004318270.1| exonuclease RNase T and DNA polymerase III [Sphingobacterium sp.
           21]
 gi|326551215|gb|ADZ79600.1| Exonuclease RNase T and DNA polymerase III [Sphingobacterium sp.
           21]
          Length = 330

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 79/201 (39%), Gaps = 9/201 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG++  +DRI+EI  ++ + D S+  +T +  + P        +  LHG+ DE 
Sbjct: 11  FFDLETTGVNVASDRIVEISILKAMPDGSEQVKTMR--INPE-MPIPLSSSLLHGVYDED 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P+F  +  E  DF  + +      N       +   L+      ++  + +D  +I
Sbjct: 68  IKDAPTFKQVAQEIADFLEDTDLAGYNSNKFDIPVLMEEFLRAGINFDIENRKFVDVQNI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
             +              ++    +  + H A  D     +V +  +     + +  K+  
Sbjct: 128 FHQ----MEQRTLKAAYKFYCDRTLENAHSAEADVRATYEVLLAQVQRYDGVEWEDKSGN 183

Query: 190 DRF-FKEEKKTVPNISLLKRD 209
                K +   +   + L R 
Sbjct: 184 KSIPVKNDVDALHRFTNLNRP 204


>gi|70732988|ref|YP_262761.1| exonuclease [Pseudomonas fluorescens Pf-5]
 gi|68347287|gb|AAY94893.1| exonuclease [Pseudomonas fluorescens Pf-5]
          Length = 235

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSP 57
          R +V D+ETTGL+   D+++ IGAV + D +   ++ F+  L   G K SP
Sbjct: 40 RWVVVDVETTGLNLNRDQVLSIGAVVIEDGAIDFSQQFERTLQRQGHKLSP 90


>gi|332652795|ref|ZP_08418540.1| exonuclease [Ruminococcaceae bacterium D16]
 gi|332517941|gb|EGJ47544.1| exonuclease [Ruminococcaceae bacterium D16]
          Length = 195

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 10/176 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I FD+ET   +S NDRI  IG V +++           + P  R  S   + L GIT 
Sbjct: 4   RYIAFDVET--PNSANDRISAIG-VTVVERGAVVEQHDYLVNPETRFAS-FNVALTGITP 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + DKP+F  ++ E    F+      IAHNA FD+  +   L+              T 
Sbjct: 60  EMVADKPAFPQLWQELEPIFDS--GLLIAHNAPFDMSVLAKCLRDYGIRWRPSVSYACTC 117

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            ++RR  P    + LN+LC   G+       H A  DS    ++ +  +  G+ + 
Sbjct: 118 QMSRRLLPQLPNHKLNTLCDFLGL---ELDHHRAGSDSLACGEILLHHLHSGADLT 170


>gi|240142188|ref|YP_002966698.1| putative Exonuclease [Methylobacterium extorquens AM1]
 gi|240012132|gb|ACS43357.1| putative Exonuclease [Methylobacterium extorquens AM1]
          Length = 190

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 11 VFDIETTGLD--------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           FD ETTG           +  RI+EIG V          TF+ FL P+G     E   L
Sbjct: 4  AFDTETTGTPAPGLPLRHPRQPRIVEIGCVLYYPDGAVADTFRTFLRPDGFTIPMEMRDL 63

Query: 63 HGI 65
          HGI
Sbjct: 64 HGI 66


>gi|110801811|ref|YP_697750.1| helicase/exonuclease [Clostridium perfringens SM101]
 gi|110682312|gb|ABG85682.1| helicase/exonuclease [Clostridium perfringens SM101]
          Length = 870

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 74/213 (34%), Gaps = 11/213 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             IVFD+E+TG+D   D II+I A++L    +    F+ FL           +       
Sbjct: 503 NIIVFDVESTGVDVTEDEIIQIAAIKLNKNVEVVDKFEKFLKNKKSVKDSYYVHGFSDEM 562

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                +     +          +++  + HN ++D+  + +EL+R N          DTL
Sbjct: 563 LQRIGEEKEKVLKEFVE---YSKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYDTL 619

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-------IKMMVGGSQ 180
            I RR +P + N       +      H+  H A+ D     ++        IK       
Sbjct: 620 DIYRRFYPGNINYKLENLSKV-YDTKHKPSHDAMDDIIATGELLVRAINEKIKETSMERM 678

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
                         ++   +  I+  KR   L 
Sbjct: 679 ALMSKHLKAFTAISKKLNELFQIAERKRPYELV 711


>gi|72162746|ref|YP_290403.1| exonuclease [Thermobifida fusca YX]
 gi|71916478|gb|AAZ56380.1| exonuclease [Thermobifida fusca YX]
          Length = 313

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 9  KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCP 50
            V D+ETTGL  +   R+ EI  V +       R F   + P
Sbjct: 31 YAVVDVETTGLRPEGGARVCEIAVVRMRGDGTVLREFTTLVDP 73


>gi|227510342|ref|ZP_03940391.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227189994|gb|EEI70061.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 945

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 7/172 (4%)

Query: 9   KIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V DIETTG D   D RII+     +        T+   + P  R+     ++L GIT 
Sbjct: 7   YAVVDIETTGTDMSVDNRIIQFSCTLVAHGKIV-ETYVSDINPQ-REVPERIIQLTGITP 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LK  P+F  + S+ +   +     ++AHN  FD  F+N E QR+    LD   I    
Sbjct: 65  ERLKKAPTFDQVSSKLYKLLSG--TVFVAHNVNFDFPFLNGEFQRVGYPELDIEAIDTVT 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                    S   L  L   + I  +H   H A  D+   + + + ++    
Sbjct: 123 LSQILLPTLSSYRLQDLSAYFNIIHNHP--HTADSDALATAKLLLILLRQVK 172


>gi|170738412|ref|YP_001767067.1| DNA polymerase III subunit epsilon [Methylobacterium sp. 4-46]
 gi|168192686|gb|ACA14633.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 223

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 70/168 (41%), Gaps = 4/168 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGLD + D I+ + A+ +  D   T+ + +  +  + R +SPEA+K+H + + 
Sbjct: 32  VALDCETTGLDPRRDEIVAVAAIRIRGDRILTSESLRATVR-SDRPSSPEAIKVHRLLNA 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +++     ++      F   +     +   + +     +  +      +P      +  
Sbjct: 91  EIREAEPLDAVLPALLRFIGGRPIVGYYTEFDVRMLDKSVRRQFGIRLPNPRIDVSSLYH 150

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +  R      + DL+       + +    +H A  D+ + + +Y+++
Sbjct: 151 AAKYRDAPDYVKIDLSFARILEDLGLPALPQHDAFNDALMTAMIYLQL 198


>gi|315446380|ref|YP_004079259.1| DNA polymerase III subunit epsilon [Mycobacterium sp. Spyr1]
 gi|315264683|gb|ADU01425.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. Spyr1]
          Length = 333

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 75/201 (37%), Gaps = 7/201 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RI+ + A+ L D     ++    L P      P    +HG+T E L
Sbjct: 22  VVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPG---VDPGPTHVHGLTAEML 78

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + +P+F  +  +  +         +AHN  FD  F++AE + +  +    + +       
Sbjct: 79  EGQPTFGDVVGDLCEVLRG--RTLVAHNVGFDYSFLSAEAELVGAELPIDTVMCTVELAR 136

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R         L +L   +G+T      H AL D+ +L+ +   ++V   +       +  
Sbjct: 137 RLDLGLENLRLETLAAHWGVTQMRP--HDALDDAMVLAQILKPVLVRAQERRKWLPVHPV 194

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
                    V +         
Sbjct: 195 GRRTWPNGRVTHDEFRPLKAL 215


>gi|295398569|ref|ZP_06808601.1| possible DNA-directed DNA polymerase III epsilon subunit
           [Aerococcus viridans ATCC 11563]
 gi|294973170|gb|EFG48965.1| possible DNA-directed DNA polymerase III epsilon subunit
           [Aerococcus viridans ATCC 11563]
          Length = 957

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 7/180 (3%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG      DRII+IG   + +    ++ F   + PN ++   E  KL GIT+
Sbjct: 8   YAVLDLETTGSTYDNGDRIIQIGVAFVQNGQVVDQ-FATDIFPN-QEIPREITKLTGITN 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +K  P F ++    W      N   +AHN  FD  F++   Q      +   R+    
Sbjct: 66  EQVKRAPKFEAVAEILWQKL--SNTVIVAHNIGFDYKFLDKSFQAHGYPAMTHDRVDTVE 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            +      +    L   C  +G  I   + H A+ D+   + + I      + +      
Sbjct: 124 MVRTLFPTADSYKLGEFCLAHG--IQLENAHTAIDDAVATAHILIMCQEKVATMPVELFA 181


>gi|307730690|ref|YP_003907914.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003]
 gi|307585225|gb|ADN58623.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003]
          Length = 383

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+ETTG  +   RI E+G VE+     T  T +   + P  +       +L GIT+ 
Sbjct: 16  VFVDLETTGGSTNEHRITEVGVVEV---GPTGVTRWSSLVDPQ-QPIPSFIQQLTGITNA 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            ++  P+F +I  E +   N     ++AHNA FD GF+  E +
Sbjct: 72  MVRGAPTFDAIAPELFARLNG--KLFVAHNASFDRGFLRGEFR 112


>gi|254884285|ref|ZP_05256995.1| DNA Pol III epsilon chain [Bacteroides sp. 4_3_47FAA]
 gi|254837078|gb|EET17387.1| DNA Pol III epsilon chain [Bacteroides sp. 4_3_47FAA]
          Length = 260

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 14/182 (7%)

Query: 6   KMR------KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPE 58
           KM+       + FD+ETTG +   DRI+EI  +++  + ++  +T +  + P       +
Sbjct: 2   KMKLNLKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEETKTMR--INPEMH-IPEQ 58

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           +  +HGI D  + D P+F  +  E        +      N           L+      +
Sbjct: 59  SSAIHGIYDADVADCPTFKEVAKEIARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDM 118

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              + ID   I  +          S   ++    +    H A  D+    +V    +   
Sbjct: 119 MKRKFIDVQVIYHK----LEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLKSQLDRY 174

Query: 179 SQ 180
            +
Sbjct: 175 PE 176


>gi|222151870|ref|YP_002561030.1| hypothetical protein MCCL_1627 [Macrococcus caseolyticus JCSC5402]
 gi|222120999|dbj|BAH18334.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 297

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 66/211 (31%), Gaps = 9/211 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D ET   +     I  +G V+++D   T  TF   + P    N+   + +H I  E
Sbjct: 4   FIALDFET--ANHNAASICSVGMVKVIDNMMT-ETFYTLVNPETNFNT-SNINVHNIKPE 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+F +++     F  +             V   + +        L          
Sbjct: 60  DVTAAPTFETVYPHMLSFIGDLPVVCHFAQFDMKVLHASIKRYHFEMPTLPYFCSCIMAR 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                H  S  ++ +              H AL D+   + + ++++     +N      
Sbjct: 120 DTVTNHSYSLKNMMTYYNLE-----FHGHHHALNDAKACAMITVRLLKNYESLNQYLTYK 174

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
             + +          + + R +    RIT +
Sbjct: 175 RRKKYISSVSLKSKRAQMARYQTDLNRITPD 205


>gi|167570838|ref|ZP_02363712.1| possible DNA polymerase/helicase [Burkholderia oklahomensis C6786]
          Length = 408

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EIG V +     +  T+   + P  +   P   +L GITD+ +
Sbjct: 17  FVDLETTGGSAVEHRITEIGVVVVSADHVS--TWTTLVNP-RQAIPPFIQQLTGITDDMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  P+F+ + S  ++  +     ++AHNA FD GF
Sbjct: 74  RGAPTFADVASALFERLDG--KLFVAHNASFDRGF 106


>gi|167563688|ref|ZP_02356604.1| possible DNA polymerase/helicase [Burkholderia oklahomensis EO147]
          Length = 405

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EIG V +     +  T+   + P  +   P   +L GITD+ +
Sbjct: 17  FVDLETTGGSAVEHRITEIGVVVVSADHVS--TWTTLVNP-RQAIPPFIQQLTGITDDMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  P+F+ + S  ++  +     ++AHNA FD GF
Sbjct: 74  RGAPTFADVASALFERLDG--KLFVAHNASFDRGF 106


>gi|145221884|ref|YP_001132562.1| DNA polymerase III subunit epsilon [Mycobacterium gilvum PYR-GCK]
 gi|145214370|gb|ABP43774.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK]
          Length = 345

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 75/201 (37%), Gaps = 7/201 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RI+ + A+ L D     ++    L P      P    +HG+T E L
Sbjct: 34  VVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPG---VDPGPTHVHGLTAEML 90

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + +P+F  +  +  +         +AHN  FD  F++AE + +  +    + +       
Sbjct: 91  EGQPTFGDVVGDLCEVLRG--RTLVAHNVGFDYSFLSAEAELVGAELPIDTVMCTVELAR 148

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R         L +L   +G+T      H AL D+ +L+ +   ++V   +       +  
Sbjct: 149 RLDLGLENLRLETLAAHWGVTQMRP--HDALDDAMVLAQILKPVLVRAQERRKWLPVHPV 206

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
                    V +         
Sbjct: 207 GRRTWPNGRVTHDEFRPLKAL 227


>gi|303233442|ref|ZP_07320110.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Atopobium vaginae PB189-T1-4]
 gi|302480450|gb|EFL43542.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Atopobium vaginae PB189-T1-4]
          Length = 539

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 53/176 (30%), Gaps = 10/176 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL   +D + +I AV+      T  TF  F+ P  +       KL  I +  
Sbjct: 84  VFLDTETTGLSFADDSLTQIAAVKRRADG-TFDTFCTFVHPP-KPIPAHISKLTNIYNAD 141

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P           F                      + Q ++   +D   +      
Sbjct: 142 VAAAPKPKEAVLALAQFVGGAPIVAHNAAFDKTFVEGVLQHQTVSSTWIDSLALSKIAFP 201

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +   H      +   C R          H A  D   L+DV+  MM    Q+    
Sbjct: 202 SFNTHKLEDLAVLFGCARV--------THRADDDCKALADVWHYMMRALCQLPESL 249


>gi|270261613|ref|ZP_06189886.1| ribonuclease T [Serratia odorifera 4Rx13]
 gi|270045097|gb|EFA18188.1| ribonuclease T [Serratia odorifera 4Rx13]
          Length = 226

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIET G ++K D ++EI AV L      + + + T    + P  G    PEAL  +G
Sbjct: 31  VVIDIETAGFNAKTDALLEIAAVTLKMDEEGWLQQDETLHFHVEPFEGANLQPEALAFNG 90

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +         A  +AHNA FD  F+ A  +R +  
Sbjct: 91  IDPHNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFLMAAAERASLK 150

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C    I       H AL D+   + ++ +++ 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACIAADIPFDSTQAHSALYDTEQTAQLFCELVN 210

Query: 177 GGSQIN 182
              ++ 
Sbjct: 211 RWKRLG 216


>gi|268320049|ref|YP_003293705.1| hypothetical protein FI9785_1583 [Lactobacillus johnsonii FI9785]
 gi|262398424|emb|CAX67438.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
           johnsonii FI9785]
          Length = 320

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 5/170 (2%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
            D+ETTGL    DRI E+G + +        TF   +  P+  K      KL+GI +  +
Sbjct: 36  IDVETTGLSPYRDRITEMGGLRVRHGEVVA-TFSELVKFPDSNKVPAFITKLNGIDEATI 94

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++K        + +  F   +   + +N  FD+ F+    ++ +   L+   +       
Sbjct: 95  EEKGLPVQEAIKKYREFIGSDPI-VGYNVNFDLNFVYDLAEKYHLTVLNNDYVDVYRLAR 153

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                   N L      + + I+   +H  L D      V+ +      Q
Sbjct: 154 SFYPQEQHNRLLDC--MHRLDIAETQEHRGLDDCLDTKKVFDEFHRLFRQ 201


>gi|170754352|ref|YP_001780953.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum B1 str. Okra]
 gi|169119564|gb|ACA43400.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum B1 str. Okra]
          Length = 855

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 88/213 (41%), Gaps = 11/213 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +VFD+E+TG++   D I++I  +++ +  +   +FQ FL P         +       
Sbjct: 494 NVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIPKKSVGDSYLVH-GFSDQ 552

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              ++  +   +  +F +F  +     + HN  FD+  +N+EL+R++ +        DTL
Sbjct: 553 FLKENGENKKVVLKDFLEFIKD--TVIVGHNVTFDISILNSELERLSLEKASFKTYYDTL 610

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF---- 183
            IARR +PS  N       +       +S H A+ D     DV + M+    +       
Sbjct: 611 DIARRFYPSLTNHKLETLSKL-FNTETKSSHDAMDDILATKDVLMAMLKEKVKPTIINRM 669

Query: 184 ---GFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
              G    +     EE   +  +S +K  K + 
Sbjct: 670 VVYGKYIKKFEPIYEEITNLKKLSYIKNPKDII 702


>gi|227889381|ref|ZP_04007186.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii
           ATCC 33200]
 gi|227850183|gb|EEJ60269.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii
           ATCC 33200]
          Length = 320

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 5/170 (2%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
            D+ETTGL    DRI E+G + +        TF   +  P+  K      KL+GI +  +
Sbjct: 36  IDVETTGLSPYRDRITEMGGLRVRHGEVVA-TFSELVKFPDSNKVPAFITKLNGIDEATI 94

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++K        + +  F   +   + +N  FD+ F+    ++ +   L+   +       
Sbjct: 95  EEKGLPVQEAIKKYREFIGSDPI-VGYNVNFDLNFVYDLAEKYHLTVLNNDYVDVYRLAR 153

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                   N L      + + I+   +H  L D      V+ +      Q
Sbjct: 154 SFYPQEQHNRLLDC--MHRLDIAETQEHRGLDDCLDTKKVFDEFHRLFRQ 201


>gi|168184157|ref|ZP_02618821.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf]
 gi|182672739|gb|EDT84700.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf]
          Length = 855

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 84/213 (39%), Gaps = 11/213 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +VFD+E+TG+++  D I++I  +++    +   +FQ FL P         +       
Sbjct: 494 NVVVFDVESTGINTTEDEIVQIAGIKINSKGEAIESFQRFLNPKKSVGDSYLVHGFSDQF 553

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                +     +          ++   + HN  FD+  +N+EL+R++ +        DTL
Sbjct: 554 LKENGENKKVVLKDFLK---FIKDTVIVGHNVTFDISILNSELERLSLEKASFKTYYDTL 610

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF---- 183
            IARR +PS  N       +       +S H A+ D     D+ + M+    +       
Sbjct: 611 DIARRFYPSLTNHKLETLSKL-FNTETKSSHDAMDDILATKDILMVMLREKVKPTIINRM 669

Query: 184 ---GFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
              G    + +   EE   +  +S +K  K + 
Sbjct: 670 VVYGKYIKKFQPIYEEIANLKKLSYIKNPKDII 702


>gi|144900310|emb|CAM77174.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 459

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGLD+  D I+ +GAV              + + P GR+    A  +HGI + 
Sbjct: 258 VVLDTETTGLDAARDAIVSVGAVRCHGSRIYRAAMLDLLVNP-GRRIPARATAIHGIDES 316

Query: 69  FLKDKP 74
            +  KP
Sbjct: 317 MVAGKP 322


>gi|325269040|ref|ZP_08135661.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
           multiformis DSM 16608]
 gi|324988661|gb|EGC20623.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
           multiformis DSM 16608]
          Length = 284

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 66/195 (33%), Gaps = 8/195 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+E TGLD  NDRII+I  ++     K  R   +F+ P G+    E  +L GI+DE 
Sbjct: 10  VIFDLEATGLDLVNDRIIQISFIKAYPDGKEERE-NIFINP-GKPIPSEVTQLTGISDED 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P+F     E  D F+  +      N  FDV  +  E  R   D       +     
Sbjct: 68  VAEAPTFKQKAKELADKFSGCDFAGFNSNR-FDVPMLAEEFLRAGVDFDFTKSRLIDAQN 126

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-----VGGSQINFG 184
              K                        H A  D+     V    +         +    
Sbjct: 127 IYHKMERRNLAAAYKFYCGRKMEEDFEAHRADQDTEATWRVLQGELDMYAPGRQEEPERV 186

Query: 185 FKTNEDRFFKEEKKT 199
              + D   +  +  
Sbjct: 187 LNNDMDELAEFSRMN 201


>gi|310823691|ref|YP_003956049.1| exonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|309396763|gb|ADO74222.1| Exonuclease [Stigmatella aurantiaca DW4/3-1]
          Length = 982

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 57/162 (35%), Gaps = 4/162 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D+ETTGLD + D +IE+GA+      +  R  +++     R       +L GI D
Sbjct: 10  RHVFLDLETTGLDPRVDEVIELGALFFEHGREVRRIARMY--APSRPLPITIRRLTGIED 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L  KP F S   E  +          AHNA F+ GF+   L  I    LD   ++  L
Sbjct: 68  AMLAGKPRFGSDLDELREALTGWTVV--AHNAPFEKGFLPKLLGPIRAPVLDSCELLHYL 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                 H        +  K                      +
Sbjct: 126 HPELSSHSLEAMMRWAGLKPRSTHRVETDCEATYAVLSRALE 167


>gi|330961648|gb|EGH61908.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 203

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 3/168 (1%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RIAVIDFETTGISPNHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF           +             +  ++      ++  
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGATPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 120

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +           L S  +      +HR+   A + ++L + +  ++
Sbjct: 121 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 168


>gi|27468497|ref|NP_765134.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus
           epidermidis ATCC 12228]
 gi|57867358|ref|YP_189001.1| exonuclease [Staphylococcus epidermidis RP62A]
 gi|251809901|ref|ZP_04824374.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282874556|ref|ZP_06283441.1| exonuclease [Staphylococcus epidermidis SK135]
 gi|293367792|ref|ZP_06614441.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27316044|gb|AAO05178.1|AE016749_124 DNA polymerase III, alpha chain PolC-type [Staphylococcus
           epidermidis ATCC 12228]
 gi|57638016|gb|AAW54804.1| exonuclease [Staphylococcus epidermidis RP62A]
 gi|251806566|gb|EES59223.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281296695|gb|EFA89204.1| exonuclease [Staphylococcus epidermidis SK135]
 gi|291318131|gb|EFE58528.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726906|gb|EGG63364.1| exonuclease [Staphylococcus epidermidis VCU144]
 gi|329734711|gb|EGG71017.1| exonuclease [Staphylococcus epidermidis VCU045]
 gi|329734804|gb|EGG71109.1| exonuclease [Staphylococcus epidermidis VCU028]
          Length = 184

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 9/178 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +SK   I  +G V+++D   T  +F   + P     +   + +HGI  E
Sbjct: 6   FVALDFET--ANSKRTSICSVGMVKVIDNQIT-ESFHTLVNPFD-YFTETNITVHGIHPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P F  ++     F        +AHNA FD+  ++  L+  N D    +       
Sbjct: 62  DVQDAPGFKHVYPYMLKFI--DQLPVVAHNAAFDMNVLHQSLKSHNIDTPSLTYFCSYQL 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
             R  +                 +     H AL D+   + +  +++     +     
Sbjct: 120 AKRTINAYRYGL---KHLMNHYHLDFHGHHDALNDAKACAMITYRLLKHYDDLQSMLS 174


>gi|329946892|ref|ZP_08294304.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328526703|gb|EGF53716.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 552

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 68/205 (33%), Gaps = 4/205 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       + EIGAV+          F   + P G     +   L GIT+ 
Sbjct: 22  FVVVDLETTGGAPGAQALTEIGAVKARGGQVLTDFF-TLVNP-GVAIPAQITMLTGITNA 79

Query: 69  FLKDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +   P   +    F D+      +   +AHNA+FDVG +      +  +  +P  +   
Sbjct: 80  MVAGAPGVRTCVEAFLDWADLLAGDVVLVAHNARFDVGHLRGAAAALGLEWPEPRVLDTL 139

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
               +    S   +         +    R  H AL D+    DV    +   + +     
Sbjct: 140 ALARKAWTRSEVPNHKLGTLAAFVGSQTRPTHRALDDACATVDVLHAALEVMAPLGVTHL 199

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211
            +               S L  D P
Sbjct: 200 EDLATASDPVPVRRRAKSRLADDLP 224


>gi|119478307|ref|ZP_01618338.1| ribonuclease T [marine gamma proteobacterium HTCC2143]
 gi|119448647|gb|EAW29892.1| ribonuclease T [marine gamma proteobacterium HTCC2143]
          Length = 235

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 73/201 (36%), Gaps = 13/201 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D + D I+EI A  + + D      ++TF   + P  G    P AL+  G
Sbjct: 35  VVIDVETGGFDCQTDAILEIAASTLTMNDEGIICIDKTFSFNVAPFEGANLEPAALEFTG 94

Query: 65  ITDEFLKD-----KPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116
           I            +  F+ + +         +      + HNA FD GF+ A ++R    
Sbjct: 95  IDPYHPFREADPEEVVFTDLLNAIRKQVKVHDCTRAVLVGHNAHFDHGFVMAAVERCQIK 154

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI+ ++   H A  D+   ++++  ++ 
Sbjct: 155 RNPFHPFSVFDTATLAGLAFGQTVLAKACQTAGISFNNAEAHSAAYDTGKTAELFCLIVN 214

Query: 177 GGSQINFGFKTNEDRFFKEEK 197
               +      N+        
Sbjct: 215 KWKDLGGWNIENDSMADMTND 235


>gi|83311148|ref|YP_421412.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
 gi|82945989|dbj|BAE50853.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
          Length = 216

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 75/194 (38%), Gaps = 22/194 (11%)

Query: 8   RKIVFDIETTGLD-SKNDRI-------------IEIGAVEL---LDYSKTNRTFQVFLCP 50
           R I  D ETTG        I             IEIG VEL    D  KT  ++   + P
Sbjct: 13  RLIAIDAETTGFRVPTAAEIKKMPKGLRLPGVMIEIGCVELLRGEDGWKTGESWHRRIQP 72

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA---KFDVGFIN 107
            G   +  ++ +HGIT   LKD P F  +  EF  F  +      +        +  +  
Sbjct: 73  GG-PIAKASIAVHGITPAELKDAPQFRDVLDEFETFIGQDMLLAHSAENEIEFLNFEYAR 131

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDSHL 166
                 +      +  + T  ++R+  P     L+ LC R  I        HGALLD+ L
Sbjct: 132 VGRCGFDDVIFSDNDFVCTQELSRQFFPGVPGSLDVLCDRLWIDRSDRFEHHGALLDAIL 191

Query: 167 LSDVYIKMMVGGSQ 180
            ++ ++KM  G  Q
Sbjct: 192 TAEAFMKMAGGFVQ 205


>gi|304406144|ref|ZP_07387801.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus
           curdlanolyticus YK9]
 gi|304344728|gb|EFM10565.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus
           curdlanolyticus YK9]
          Length = 223

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 72/199 (36%), Gaps = 11/199 (5%)

Query: 7   MR-KIVFDIETTGLDSKN--DRIIEIGAVELLDYS---KTNRTFQVFLCPNGRK-NSPEA 59
           MR  IV+D+E T L  +     IIEIGAV+L D          FQ ++ P   K  +   
Sbjct: 1   MRTYIVYDLEFTVLRKQQYAADIIEIGAVKLTDGDQGPIEIDRFQTYVKPERNKVITTHT 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPL 118
            +  GIT E +   P+F      F  +  +      +        F+        + + L
Sbjct: 61  TEFTGITQEQVDAAPTFPDAIDLFRQWIGDTTYYLCSWGPDDKQHFVRQCRDMKIELNWL 120

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                +       + + +S+    +        +   ++H AL D+   + ++++M    
Sbjct: 121 RNMNDLQLYYTKLQGNDASKRIGLARALETAGFVFDGAQHRALDDAANTARLFVRM---F 177

Query: 179 SQINFGFKTNEDRFFKEEK 197
            QI        D    E K
Sbjct: 178 DQITLEQNNAADDPLYETK 196


>gi|255068237|ref|ZP_05320092.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sicca ATCC 29256]
 gi|255047507|gb|EET42971.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sicca ATCC 29256]
          Length = 449

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 70/174 (40%), Gaps = 8/174 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+E+TG +   DR+ EI  +   +       ++  + P G+      ++L GIT+E +
Sbjct: 2   VVDLESTGGNLYQDRVTEIAFLRFENGRV--EHYEQLINP-GKPIPEFVVQLTGITNEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P+F  I  +         +  +AHN++FD  F+    +         +  + T+ ++
Sbjct: 59  AQAPAFDQIAPDILPLLRG--SLIVAHNSRFDYTFLR--HEFYRAGIDFAAPALCTVQLS 114

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           RR +P              + I    +H AL D   L+D     +   +   + 
Sbjct: 115 RRLYPQFYKHNLDSI-ISRMGIQTDDRHRALADVLALADYLEHSLKEKTSDEWD 167


>gi|168216491|ref|ZP_02642116.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens NCTC 8239]
 gi|182381517|gb|EDT78996.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens NCTC 8239]
          Length = 870

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 74/213 (34%), Gaps = 11/213 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             IVFD+E+TG+D   D II+I A++L    +    F+ FL     K   +         
Sbjct: 503 NIIVFDVESTGVDVIEDEIIQIAAIKLNKKGEVVDKFEKFLK---NKKPVKDSYYVHGFS 559

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  K                + +  + HN ++D+  + +EL+R N          DTL
Sbjct: 560 DEMLQKIGEDKEKVLKEFVEYSKGSIIVGHNVQYDINILCSELERSNLGKPKFKTFYDTL 619

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-------IKMMVGGSQ 180
            I RR +P + N              H+  H A+ D     ++        I+       
Sbjct: 620 DIYRRFYPGNINYKLENLSNV-YDTKHKPSHDAMDDIIATGELLVRAINEKIRETSMERM 678

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
                         ++   +  IS  KR   L 
Sbjct: 679 ALMSKHLKAFTAISKKLNELFKISESKRPYELV 711


>gi|153939167|ref|YP_001390679.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum F str. Langeland]
 gi|152935063|gb|ABS40561.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum F str. Langeland]
          Length = 855

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 88/213 (41%), Gaps = 11/213 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +VFD+E+TG++   D I++I  +++ +  +   +FQ FL P         +       
Sbjct: 494 NVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIPKKSVGDSYLVH-GFSDQ 552

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              ++  +   +  +F +F  +     + HN  FD+  +N+EL+R++ +        DTL
Sbjct: 553 FLKENGENKKVVLKDFLEFIKD--TVIVGHNVTFDISILNSELERLSLEKASFKTYYDTL 610

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF---- 183
            IARR +PS  N       +       +S H A+ D     DV + M+    +       
Sbjct: 611 DIARRFYPSLTNHKLETLSKL-FNTETKSSHDAMDDILATKDVLMAMLKEKVKPTIINRM 669

Query: 184 ---GFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
              G    +     EE   +  +S +K  K + 
Sbjct: 670 VVYGKYIKKFEPIYEEITNLKKLSYIKNPKDII 702


>gi|227524493|ref|ZP_03954542.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088363|gb|EEI23675.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           hilgardii ATCC 8290]
          Length = 945

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 7/172 (4%)

Query: 9   KIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V DIETTG D   D RII+     +        T+   + P  R+     ++L GIT 
Sbjct: 7   YAVVDIETTGTDMSVDNRIIQFSCTLVAHGKIV-ETYVSDINPQ-REVPERIIQLTGITP 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LK  P+F  + S+ +   +     ++AHN  FD  F+N E QR+    LD   I    
Sbjct: 65  ERLKKAPTFDQVSSKLYKLLSG--TVFVAHNVNFDFPFLNGEFQRVGYPELDIEAIDTVT 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                    S   L  L   + I  +H   H A  D+   + + + ++    
Sbjct: 123 LSQILLPTLSSYRLQDLSTYFNIIHNHP--HTADSDALATAKLLLILLRQVK 172


>gi|227513350|ref|ZP_03943399.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           buchneri ATCC 11577]
 gi|227083223|gb|EEI18535.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           buchneri ATCC 11577]
          Length = 945

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 7/172 (4%)

Query: 9   KIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V DIETTG D   D RII+     +        T+   + P  R+     ++L GIT 
Sbjct: 7   YAVVDIETTGTDMSVDNRIIQFSCTLVAHGKIV-ETYVSDINPQ-REVPERIIQLTGITP 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LK  P+F  + S+ +   +     ++AHN  FD  F+N E QR+    LD   I    
Sbjct: 65  ERLKKAPTFDQVSSKLYKLLSG--TVFVAHNVNFDFPFLNGEFQRVGYPELDIEAIDTVT 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                    S   L  L   + I  +H   H A  D+   + + + ++    
Sbjct: 123 LSQILLPTLSSYRLQDLSTYFNIIHNHP--HTADSDALATAKLLLILLRQVK 172


>gi|332290155|ref|YP_004421007.1| ribonuclease T [Gallibacterium anatis UMN179]
 gi|330433051|gb|AEC18110.1| ribonuclease T [Gallibacterium anatis UMN179]
          Length = 224

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 72/187 (38%), Gaps = 13/187 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLC-PNGRKNSPEALKLHG 64
           ++ D+ET+GL+++ D ++E+ A  V++ +      +      +    G    P +LK++G
Sbjct: 33  VIVDVETSGLNAQTDGLLELAAITVKMDEQGLLHPDEKCHFQIKLFEGANVDPNSLKING 92

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +  + +          F  +          + +  +AHNA FD  F+ A + R    
Sbjct: 93  INPDDPQREAVDELTALTGFFQMVRRGQKAAECKRSILVAHNAMFDYNFLMAAINRTGIK 152

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L + C   GI       H AL D+   ++++  M+ 
Sbjct: 153 RNPFHPFSTFDTATLAGFMFGQTVLRTACDNAGIPFEPSKAHSALYDTEKTAELFCLMVN 212

Query: 177 GGSQINF 183
              Q N 
Sbjct: 213 KLKQANI 219


>gi|300727261|ref|ZP_07060677.1| exonuclease [Prevotella bryantii B14]
 gi|299775499|gb|EFI72093.1| exonuclease [Prevotella bryantii B14]
          Length = 163

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 7/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +++   +  +G V + +      +F   + P     +    ++HG+  E
Sbjct: 4   FVSIDFET--ANNERSSVCSVGIVIVRNGEIV-DSFYSLIQPEPNYYNYWCSQVHGLCHE 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              D P F  ++++       +N   +AHN  FD G + A  +    D  D         
Sbjct: 61  DTDDAPVFPKVWAQIEPLI--ENLPLVAHNKPFDEGCLKAVFRVYQMDYPDYEFYDTLCV 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R       + L ++    G        H AL D+   + +  +++
Sbjct: 119 SRRVLPDLENHQLQTVAAACG--YCLEDHHHALADAEACAWIAREIL 163


>gi|313632670|gb|EFR99647.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           seeligeri FSL N1-067]
          Length = 928

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 5/163 (3%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + R IV D+ETTG  + + DRII+  A  +    +   T+  FL P  +       +L 
Sbjct: 2   KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYATFLNPE-KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+ + +KD P F  +         +    ++AHN  FD  F+  E+ R         ++
Sbjct: 60  GISPKDVKDAPLFEDVAPIIAGLLED--TIFVAHNVSFDWTFLEREMTRAGISLGKMKKL 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
                            L  L   +G+      +  +  +   
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFGLGHDKPHQADSDAEVTA 160


>gi|289435248|ref|YP_003465120.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171492|emb|CBH28036.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 928

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 5/163 (3%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + R IV D+ETTG  + + DRII+  A  +    +   T+  FL P  +       +L 
Sbjct: 2   KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYATFLNPE-KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+ + +KD P F  +         +    ++AHN  FD  F+  E+ R         ++
Sbjct: 60  GISPKDVKDAPLFEDVAPIIAGLLED--TIFVAHNVSFDWTFLEREMTRAGISLGKMKKL 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
                            L  L   +G+      +  +  +   
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFGLGHDKPHQADSDAEVTA 160


>gi|255100360|ref|ZP_05329337.1| putative exonuclease [Clostridium difficile QCD-63q42]
          Length = 258

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 81/236 (34%), Gaps = 23/236 (9%)

Query: 7   MRKIVFDIETTGLDSKND--------------RIIEIGAVELLDYSKTNRTFQVFLCPN- 51
           M  I+FD+E    +   D               II+IGA++L        TF  ++ P  
Sbjct: 1   MEYIIFDLE---FNQGFDKKLNKTVSNEKCPFEIIQIGAIKLDSKFNIIDTFNSYVKPTI 57

Query: 52  GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAE 109
            +   P   ++  I +    D P+F  +++ F  F + Q+       A    ++      
Sbjct: 58  YKDIHPFISRMTNIKNSDFNDSPTFPEVYNNFIKFISSQDPILCVWGAGDLKELYRNINY 117

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            +  +         I   +     +P+ ++                S H AL D++  + 
Sbjct: 118 HKLPSNSLPKSYINIQQHASKYFNNPAGKSIGLQNAISILELDEKMSYHNALNDAYYTAK 177

Query: 170 VYIKMMVGGSQINFGFKTN--EDRFFKEEKKTVPNISLLKRDKPLFTR-ITKEELD 222
           V+IK+       +    T+          KK V    L    + +  R +TK+E  
Sbjct: 178 VFIKIYNPSIVPDIYLYTSIKPKTIRYSNKKRVDYDKLFDEFRKILNRELTKDEKK 233


>gi|332829625|gb|EGK02271.1| hypothetical protein HMPREF9455_01541 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 256

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 68/199 (34%), Gaps = 8/199 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG D+  DRI+EI  +++  +  +  +T    L P      P A  +HGI+DE
Sbjct: 10  VFFDLETTGTDTVKDRIVEISYLKVYPNGKQEVKT--KRLNPE-MPIPPGATAVHGISDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P+F  I     D     +      +           L+          ++ID   
Sbjct: 67  DVKDCPTFKQIAKSLADQMEGCDLAGFNSSRFDIPLLAEEFLRAGVDIDFSKRKMIDVQI 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I  +              ++         H A  D+    +V    +     +    +  
Sbjct: 127 IFHK----KEQRTLEAAYKFYCDKELTDAHSAEADTLATFEVLKAQLDKYPDLVNDMEKL 182

Query: 189 EDRFFKEEKKTVPNISLLK 207
            + F            ++K
Sbjct: 183 AEEFSFFNNNVDLAGRIIK 201


>gi|304437456|ref|ZP_07397414.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369506|gb|EFM23173.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 219

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 71/222 (31%), Gaps = 23/222 (10%)

Query: 7   MRKIVFDIETTGLDSKN-----------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M+ IV D+E   ++                IIEIGAV L +       FQ ++CP     
Sbjct: 1   MKHIVVDLE---MNPVGKEYRDVRRKLNGEIIEIGAVRLNEDFVQEDEFQCYVCPEYGMV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA---KFDVGFINAELQR 112
                +L GIT E +   P+F+  F  F  +  E   +  + +    K        +L  
Sbjct: 58  KKHITELTGITQEKVAGHPAFADSFHAFVVWIGEAETKIYSWSMSDIKQLRKECRLKLPD 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +   LD   +        R    +   L       G        H AL D+   S V  
Sbjct: 118 FDVTWLDARWVDLQQEFDDRLGLHNSLALKHALGAMGRRFEGSQ-HSALADAVNTSAVLA 176

Query: 173 KMMVGGS-----QINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
            M          +         D       +  P++  LKR+
Sbjct: 177 LMQDDAKFRETMRPVLEILEPSDGLSNSIGELFPDLEKLKRN 218


>gi|52424757|ref|YP_087894.1| ribonuclease T [Mannheimia succiniciproducens MBEL55E]
 gi|52306809|gb|AAU37309.1| DnaQ protein [Mannheimia succiniciproducens MBEL55E]
          Length = 223

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 70/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G ++K D ++E+ A+ L    +     ++     + P  G   +PE++K +G
Sbjct: 30  VIIDVETAGFNAKTDALLELAAITLKMDENGLLVPDQKCHFHIKPFEGANINPESIKFNG 89

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +          +       +  +       Q +  +AHNA FD  F+ A   R    
Sbjct: 90  IDIDNPLRGAVPESEAITGLFQMVRKGQKNAGCQRSIIVAHNATFDQSFVMAAADRTKIK 149

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + +       +  L   C+   I    +  H AL D+   ++++  M+ 
Sbjct: 150 RNPFHPFSSFDTASLSGLMFGQTVLVKACQAAHIAFDGKQAHSALYDTERTAELFCYMVN 209

Query: 177 GGSQIN 182
               + 
Sbjct: 210 HLKALG 215


>gi|326803711|ref|YP_004321529.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651377|gb|AEA01560.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 890

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +  V D+ETTG    + DRII+IG V L    K    F+  + P           L GI 
Sbjct: 4   KYAVVDLETTGTKYNRGDRIIQIGVVFLEGQKKIGE-FKSNIQP-LIPVPKNISDLTGIQ 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
            E L+D P F  I  + +    +        N  +
Sbjct: 62  TEDLRDAPLFEDIAPDLFQQLQDCVFVAHNINFDY 96


>gi|301066539|ref|YP_003788562.1| Rad3-like DNA helicase [Lactobacillus casei str. Zhang]
 gi|300438946|gb|ADK18712.1| Rad3-related DNA helicase [Lactobacillus casei str. Zhang]
          Length = 931

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 7/101 (6%)

Query: 6   KMR----KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           KM       V D+ETTG   K  DR+I+ G   +       +T    + P+ R       
Sbjct: 3   KMNAETIFAVVDLETTGTSVKDGDRMIQFGCALMQHGKII-QTISQLVNPD-RSVPVAIQ 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
           +L G+    L   P F  I         +        N  +
Sbjct: 61  RLTGLDPNRLVAAPYFEEIAKTLHQLLTDTVFVAHNVNFDY 101


>gi|239631428|ref|ZP_04674459.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525893|gb|EEQ64894.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 931

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 7/101 (6%)

Query: 6   KMR----KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           KM       V D+ETTG   K  DR+I+ G   +       +T    + P+ R       
Sbjct: 3   KMNAETIFAVVDLETTGTSVKDGDRMIQFGCALMQHGKII-QTISQLVNPD-RSVPVAIQ 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
           +L G+    L   P F  I         +        N  +
Sbjct: 61  RLTGLDPNRLVAAPYFEEIAKTLHQLLTDTVFVAHNVNFDY 101


>gi|227535024|ref|ZP_03965073.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187339|gb|EEI67406.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 931

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 7/101 (6%)

Query: 6   KMR----KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           KM       V D+ETTG   K  DR+I+ G   +       +T    + P+ R       
Sbjct: 3   KMNAETIFAVVDLETTGTSVKDGDRMIQFGCALMQHGKII-QTISQLVNPD-RSVPVAIQ 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
           +L G+    L   P F  I         +        N  +
Sbjct: 61  RLTGLDPNRLVAAPYFEEIAKTLHQLLTDTVFVAHNVNFDY 101


>gi|217963949|ref|YP_002349627.1| DnaQ family exonuclease/DinG family helicase [Listeria
           monocytogenes HCC23]
 gi|217333219|gb|ACK39013.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           monocytogenes HCC23]
 gi|307571481|emb|CAR84660.1| ATP-dependent helicase [Listeria monocytogenes L99]
          Length = 928

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + R IV D+ETTG  + + DRII+  A  +    +   T+  FL P  +       +L 
Sbjct: 2   KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           GI+ + +K+ P F  +         +    ++AHN  FD  F+  E+
Sbjct: 60  GISPKDVKNAPLFEDVAPIIAGLLED--TIFVAHNVSFDWTFLEREM 104


>gi|323527026|ref|YP_004229179.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001]
 gi|323384028|gb|ADX56119.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001]
          Length = 386

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+ETTG  +   RI E+G VE+     T  T +   + P  +       +L GIT+ 
Sbjct: 16  VFVDLETTGGSTNEHRITEVGVVEV---GPTGVTRWSSLVDPQ-QPIPSFIQQLTGITNA 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            ++  P+F +I  E +   +     ++AHNA FD GF+  E +
Sbjct: 72  MVRGAPTFEAIAPELFARLDG--KLFVAHNASFDRGFLRGEFR 112


>gi|237802391|ref|ZP_04590852.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025248|gb|EGI05304.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 237

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 67/200 (33%), Gaps = 6/200 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ET+GL+   D+++ IGAV + D +    + F+   L  + + +    +     
Sbjct: 42  RWVVLDLETSGLNMSRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVLIHGLAP 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +      +P       +   F  +             +     +     +       I +
Sbjct: 102 SAIAAGSEP--VEALLDLMAFIGDSPVLGFHAPFDQHMLSRALKESLGYRLQHPFFDIAE 159

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
              +   +       L+   + +G+      +H A  D+ + +++ + +     +     
Sbjct: 160 LAPMLCEQANLRHAGLDDWTRFFGLQ--AEERHHASADALVTAELALILFSHARRKQIDS 217

Query: 186 KTNEDRFFKEEKKTVPNISL 205
               D    + ++   + S 
Sbjct: 218 PLLLDERLGQWRRRTQSHSF 237


>gi|299132474|ref|ZP_07025669.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2]
 gi|298592611|gb|EFI52811.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2]
          Length = 297

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 52/228 (22%), Gaps = 9/228 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL---DYSKTN--RTFQVFLCPNGRKNSPEALKLHGIT 66
            D+ETTGLD   D IIE+  V      D +       F     P+   +S   +      
Sbjct: 46  VDVETTGLDPDRDEIIELAMVPFRYALDGTVVEVLEPFDRLREPSKPISSEITVLTGITD 105

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                     S +                      +        +       +     + 
Sbjct: 106 AMVAGKSIDPSEVTMFAAPAAVVIAHNAAFDRRFLERFSPVFSTKPWACSMSEIDWAAEG 165

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
              A+  + +          R         +  A       +    K++       +   
Sbjct: 166 FEGAKLSYLAMALGFFYDRHRAANDCLAAIELLARELPRARAPALAKLLERARLPTWRIW 225

Query: 187 TNEDRFFKEEKKTVP----NISLLKRDKPLFTRITKEELDEHDKTIQT 230
                F  ++         N     + +  +  ++  E +     +  
Sbjct: 226 AENSPFEFKDLLKARGYRWNGEENGKPRSWYVDVSDAEKEAEISYLAR 273


>gi|77461145|ref|YP_350652.1| exonuclease [Pseudomonas fluorescens Pf0-1]
 gi|77385148|gb|ABA76661.1| putative exonuclease [Pseudomonas fluorescens Pf0-1]
          Length = 203

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 7/173 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+    + R  EI  V L +     R +Q  +   G +      +L GI+
Sbjct: 3   RIAVIDFETTGISPSSSCRATEIAVVMLENGRIVER-YQSLMN-AGVRIPAFIEQLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  L+  PS   + +E  +F        +AHNA FD  F + EL RI +  L       +
Sbjct: 61  NAMLRTAPSAEKVMNEVNEFV--GCTPLLAHNAAFDQKFWDFELGRIKRTRL--QNFACS 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           L +ARR  P++ N        +         H A+ D+ + +++ + +     
Sbjct: 117 LLLARRLMPAAPNHKLGTLTTFAQLPHTGQAHRAMADAEMAANLMVHLAGELR 169


>gi|330685586|gb|EGG97232.1| exonuclease [Staphylococcus epidermidis VCU121]
          Length = 184

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 59/173 (34%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V++++   T  +F   + PN    S + + +HGI  E
Sbjct: 6   FVALDFET--ANGKRTSICSVGMVKVIENQIT-ESFHTLVNPND-YFSEQNISVHGIHPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+FS ++     F ++            +V   + +   +    L          
Sbjct: 62  DVASSPNFSYVYPYMMQFIDQLPVVAHNAAFDMNVLHQSIQAIGLETPHLTYFCSYQLAK 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
              + H      +    +           H AL D+   + +  +++     +
Sbjct: 122 RTVQSHRYGLKHMMDYYQL-----DFHGHHDALNDAKACAMITFRLLKHYDDL 169


>gi|282921701|ref|ZP_06329418.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9765]
 gi|282593963|gb|EFB98952.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9765]
          Length = 897

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +      T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D   +    ++AHN  FD+ FI    +  N        I     
Sbjct: 64  MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       L+ L + +GIT    + H A  D+   + + I       ++   
Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175


>gi|260753544|ref|YP_003226437.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552907|gb|ACV75853.1| Exonuclease RNase T and DNA polymerase III [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 297

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 69/236 (29%), Gaps = 27/236 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL---DYSK--TNRTFQVFLCPNGRKNSPEALKLHGI 65
           V D+ETTGLD + D IIE+         D +      +FQ    P+              
Sbjct: 45  VVDVETTGLDPQRDEIIELAMTPFNYGLDGTIFSVGDSFQGLRQPSKPIAPEITAITGIT 104

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +           +       F    +  IAHNA FD  F+    +R N           
Sbjct: 105 NEMVAGQ-----IVDPAAVASFAAPASLVIAHNAAFDRRFL----ERFNDVFSTKPWACS 155

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---------KMMV 176
              I           L  L +  G            L +  L  +++         +++ 
Sbjct: 156 LSQIDWAAEGFEGTKLAYLAQAAGFFYDRHRAMHDCLATVELLAMWLPRSGATGLSRLLD 215

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVP----NISLLKRDKPLFTRITKEELDEHDKTI 228
           G   +++        F  ++         N     + +  +  + + + +   + +
Sbjct: 216 GARTVSWRIWAENAPFDLKDVLKARGYRWNGDPGPQPRAWYIDVPEAQCEAELRFL 271


>gi|156979774|ref|YP_001442033.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|156721909|dbj|BAF78326.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp.
           aureus Mu3]
          Length = 897

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +      T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D   +    ++AHN  FD+ FI    +  N        I     
Sbjct: 64  MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       L+ L + +GIT    + H A  D+   + + I       ++   
Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175


>gi|322829565|gb|EFZ32905.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
           cruzi]
          Length = 1404

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFDIE+TGL++  D IIEI A           +F   + P  R    E + +H ITD
Sbjct: 761 RLVVFDIESTGLNTATDAIIEIAAW----DPVEATSFSSLVDPE-RAIPQETMAIHHITD 815

Query: 68  EFLKDKPSFSSIFSEFWDFFNE 89
             ++  P    +      +   
Sbjct: 816 GMVRGAPRLPEVTRALARYLRL 837


>gi|21283074|ref|NP_646162.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486295|ref|YP_043516.1| hypothetical protein SAS1398 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253732097|ref|ZP_04866262.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253733298|ref|ZP_04867463.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|297207885|ref|ZP_06924318.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911970|ref|ZP_07129413.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|81827855|sp|Q6G9A7|DING_STAAS RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81847815|sp|Q8NWP2|DING_STAAW RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|21204514|dbj|BAB95210.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244738|emb|CAG43174.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253724144|gb|EES92873.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253728838|gb|EES97567.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|296887459|gb|EFH26359.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300886216|gb|EFK81418.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus TCH70]
          Length = 897

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +      T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D   +    ++AHN  FD+ FI    +  N        I     
Sbjct: 64  MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       L+ L + +GIT    + H A  D+   + + I       ++   
Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175


>gi|71414478|ref|XP_809340.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain
           CL Brener]
 gi|70873706|gb|EAN87489.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
           cruzi]
          Length = 1473

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFDIE+TGL++  D IIEI A           +F   + P  R    E + +H ITD
Sbjct: 830 RLVVFDIESTGLNTATDAIIEIAAW----DPVEATSFSSLVDPE-RAIPQETMAIHHITD 884

Query: 68  EFLKDKPSFSSIFSEFWDFFNE 89
             ++  P    +      +   
Sbjct: 885 GMVRGAPRLPEVTRALARYLRL 906


>gi|332520058|ref|ZP_08396522.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332044617|gb|EGI80811.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 1453

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 74/241 (30%), Gaps = 23/241 (9%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R I+I             +    + P G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDAMGNCIESEDYLVKPEGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI---------NAE 109
           A K+HGI+ E  +++        E ++    +    +  N KFD+  +           +
Sbjct: 62  AEKIHGISTELAQEQGVELIEVLEKFNIALNKTKFVVGQNVKFDLNIMGAEFVREDIANQ 121

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           LQ +               I   +    +    +   +Y         H A  D    + 
Sbjct: 122 LQELPVLDTCTEHTASLCQIPGGRGGRFKLPTLTELHQYLFNQPFAEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
            +++++              D F    +     I L+           K+E  + +  +Q
Sbjct: 182 CFLELIRRQQYTKEQLDVQPDYFENFSEANPQPIQLIGLKHINL----KKESAKINARLQ 237

Query: 230 T 230
            
Sbjct: 238 K 238


>gi|323442219|gb|EGA99850.1| ATP-dependent DNA helicase [Staphylococcus aureus O46]
          Length = 897

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +      T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D   +    ++AHN  FD+ FI    +  N        I     
Sbjct: 64  MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       L+ L + +GIT    + H A  D+   + + I       ++   
Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175


>gi|312829847|emb|CBX34689.1| dnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus ECT-R 2]
          Length = 897

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +      T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D   +    ++AHN  FD+ FI    +  N        I     
Sbjct: 64  MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       L+ L + +GIT    + H A  D+   + + I       ++   
Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175


>gi|302333066|gb|ADL23259.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 897

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +      T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D   +    ++AHN  FD+ FI    +  N        I     
Sbjct: 64  MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       L+ L + +GIT    + H A  D+   + + I       ++   
Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175


>gi|283770528|ref|ZP_06343420.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus
           H19]
 gi|283460675|gb|EFC07765.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus
           H19]
          Length = 897

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +      T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D   +    ++AHN  FD+ FI    +  N        I     
Sbjct: 64  MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       L+ L + +GIT    + H A  D+   + + I       ++   
Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175


>gi|282916722|ref|ZP_06324480.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus D139]
 gi|282319209|gb|EFB49561.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus D139]
 gi|298694746|gb|ADI97968.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED133]
 gi|323439542|gb|EGA97263.1| ATP-dependent DNA helicase [Staphylococcus aureus O11]
          Length = 897

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +      T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D   +    ++AHN  FD+ FI    +  N        I     
Sbjct: 64  MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       L+ L + +GIT    + H A  D+   + + I       ++   
Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175


>gi|221140978|ref|ZP_03565471.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|302751286|gb|ADL65463.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus str. JKD6008]
          Length = 897

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +      T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D   +    ++AHN  FD+ FI    +  N        I     
Sbjct: 64  MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       L+ L + +GIT    + H A  D+   + + I       ++   
Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175


>gi|62184729|ref|YP_219514.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3]
 gi|62147796|emb|CAH63542.1| putative DNA polymerase III epsilon chain [Chlamydophila abortus
          S26/3]
          Length = 249

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D E TGLD K DRIIE  A+     S    + +  + P+ R  S E+ ++H I+D 
Sbjct: 9  FVCLDCEMTGLDVKKDRIIEFAAIRFTFDSVI-DSMETLINPD-RVISAESQRIHHISDA 66

Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97
           LKD+P  + +F +   F  E +      
Sbjct: 67 MLKDQPRIAEVFPKIKSFLKEGDYIVGHS 95


>gi|15924445|ref|NP_371979.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927036|ref|NP_374569.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus N315]
 gi|57650410|ref|YP_186339.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus COL]
 gi|87161026|ref|YP_494043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88195189|ref|YP_499990.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|148267941|ref|YP_001246884.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394004|ref|YP_001316679.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151221578|ref|YP_001332400.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509623|ref|YP_001575282.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253315964|ref|ZP_04839177.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|255006242|ref|ZP_05144843.2| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257795489|ref|ZP_05644468.1| DnaQ family protein [Staphylococcus aureus A9781]
 gi|258413298|ref|ZP_05681574.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9763]
 gi|258420595|ref|ZP_05683537.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9719]
 gi|258426791|ref|ZP_05688011.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9299]
 gi|258444789|ref|ZP_05693118.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8115]
 gi|258447377|ref|ZP_05695521.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6300]
 gi|258449738|ref|ZP_05697839.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6224]
 gi|258451113|ref|ZP_05699148.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5948]
 gi|258454593|ref|ZP_05702557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5937]
 gi|269203080|ref|YP_003282349.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892951|ref|ZP_06301186.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8117]
 gi|282927982|ref|ZP_06335591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A10102]
 gi|284024454|ref|ZP_06378852.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848419|ref|ZP_06789165.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9754]
 gi|295407205|ref|ZP_06817005.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8819]
 gi|296275347|ref|ZP_06857854.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297244629|ref|ZP_06928512.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8796]
 gi|304380963|ref|ZP_07363621.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|81832505|sp|Q7A5K4|DING_STAAN RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81855933|sp|Q99U34|DING_STAAM RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81859586|sp|Q5HFW8|DING_STAAC RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|122539544|sp|Q2FYH5|DING_STAA8 RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|123485907|sp|Q2FGY5|DING_STAA3 RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|13701253|dbj|BAB42548.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247226|dbj|BAB57617.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|57284596|gb|AAW36690.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127000|gb|ABD21514.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202747|gb|ABD30557.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147741010|gb|ABQ49308.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946456|gb|ABR52392.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus JH1]
 gi|150374378|dbj|BAF67638.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368432|gb|ABX29403.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|257789461|gb|EEV27801.1| DnaQ family protein [Staphylococcus aureus A9781]
 gi|257839862|gb|EEV64330.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9763]
 gi|257843543|gb|EEV67950.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9719]
 gi|257849952|gb|EEV73910.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9299]
 gi|257850282|gb|EEV74235.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8115]
 gi|257853568|gb|EEV76527.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6300]
 gi|257856986|gb|EEV79886.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6224]
 gi|257861168|gb|EEV83981.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5948]
 gi|257862976|gb|EEV85740.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5937]
 gi|262075370|gb|ACY11343.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940948|emb|CBI49332.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282590279|gb|EFB95359.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A10102]
 gi|282764948|gb|EFC05073.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8117]
 gi|285817135|gb|ADC37622.1| DinG family ATP-dependent helicase YoaA [Staphylococcus aureus
           04-02981]
 gi|294824445|gb|EFG40868.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9754]
 gi|294967918|gb|EFG43947.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8819]
 gi|297178659|gb|EFH37905.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8796]
 gi|304340488|gb|EFM06424.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|315129170|gb|EFT85165.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus CGS03]
 gi|315197799|gb|EFU28133.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320140373|gb|EFW32229.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142700|gb|EFW34503.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314132|gb|AEB88545.1| Probable ATP-dependent helicase dinG -like protein [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329723190|gb|EGG59721.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329727432|gb|EGG63888.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 897

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +      T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D   +    ++AHN  FD+ FI    +  N        I     
Sbjct: 64  MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       L+ L + +GIT    + H A  D+   + + I       ++   
Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175


>gi|293374981|ref|ZP_06621276.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909]
 gi|325843349|ref|ZP_08167932.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1]
 gi|292646391|gb|EFF64406.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909]
 gi|325489378|gb|EGC91751.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1]
          Length = 306

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 76/227 (33%), Gaps = 13/227 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K D    IG   + +     + +   + PN  + +P  + +HGI 
Sbjct: 1   MNFIAIDFET--ANEKRDSACSIGLTVVKNNQIIEQKYY-LIKPNELRFAPINISIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +K+  +F  ++ E   +F   N   +AHNA FD+  +   L   +    +       
Sbjct: 58  ASDVKNAKTFDQLWPELLPYF--TNNIIMAHNAAFDLSVLRHTLDAYHIPYPNCRYGCTM 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL--------LSDVYIKMMVGG 178
           +             LN++    G+  +H                    L    ++ +   
Sbjct: 116 ILSRNFFPHLENAKLNTVNHHLGLEFNHHHASADAHACANIVLKMQEELQCADLEELCQM 175

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
           + +  G   +      ++ K            PL    +K ++ +H 
Sbjct: 176 AGLKLGTLHDAGYIPAKKLKKTVTSKRNFTPSPLPFISSKSDVFKHK 222


>gi|254448582|ref|ZP_05062041.1| ribonuclease T [gamma proteobacterium HTCC5015]
 gi|198261771|gb|EDY86057.1| ribonuclease T [gamma proteobacterium HTCC5015]
          Length = 212

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 67/183 (36%), Gaps = 13/183 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIET G +++ D ++EI AV +        +   T    + P  G    P++L++ G
Sbjct: 17  VVIDIETGGFNAQTDAVLEIAAVMIDMDHQGRLRVGETISTHVEPFQGANIEPKSLEITG 76

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +                    A  + HN+ FD+ F+NA + R    
Sbjct: 77  IDLNNPLRGAVSEREALDKLLKPIRSAVKNHGCTRAILVGHNSFFDLNFLNAAIDRCTYK 136

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      ++        +  L   C+  G+  ++   H A+ D+   + ++ K++ 
Sbjct: 137 RNPFHAFSSFDTVTIAGLAYGQTVLARACEAAGLGWNNSEAHSAVYDAEQTARLFCKVIN 196

Query: 177 GGS 179
              
Sbjct: 197 QWD 199


>gi|228471317|ref|ZP_04056120.1| exonuclease [Porphyromonas uenonis 60-3]
 gi|228306894|gb|EEK16002.1| exonuclease [Porphyromonas uenonis 60-3]
          Length = 255

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 8/171 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FDIE TGLD  NDRIIE+  ++L+ D  +  RT      P       E+  +HGITD+
Sbjct: 10  VFFDIEATGLDITNDRIIELTILKLMPDGERIVRT--RRFNPE-MPIPAESTAIHGITDD 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P F +      +  +  +                  L+   +  L   + ID  +
Sbjct: 67  DVRDCPPFRACAKSLAELIDGCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLAMQHIDVQT 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           I  +  P           R+     H   HGA  D+    DV +  +    
Sbjct: 127 IFHKMEP----RTLEGAVRFYCHREHIGAHGAEADTIATLDVLMAQLDKYG 173


>gi|188528322|ref|YP_001911009.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470]
 gi|188144562|gb|ACD48979.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470]
 gi|308064307|gb|ADO06194.1| DNA polymerase III subunit epsilon [Helicobacter pylori Sat464]
          Length = 287

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYITELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 132 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177


>gi|326791308|ref|YP_004309129.1| exonuclease RNase T and DNA polymerase III [Clostridium lentocellum
           DSM 5427]
 gi|326542072|gb|ADZ83931.1| Exonuclease RNase T and DNA polymerase III [Clostridium lentocellum
           DSM 5427]
          Length = 248

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 83/234 (35%), Gaps = 20/234 (8%)

Query: 7   MRKIVFDIETTGLD----SKND----------RIIEIGAVELLDYSKTNRTFQVFLCPN- 51
           M  IVFD+E    +    ++ D           II+IGAV+L +   T  TF   + P  
Sbjct: 1   MNYIVFDLE---FNQDFSARKDVVNKENPYTFEIIQIGAVKLDENFHTIDTFNRLIKPTI 57

Query: 52  GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAE 109
             + +P    L GIT E L  + SFS ++  + +F   + A            +      
Sbjct: 58  YEEMNPFVSYLTGITIEQLAQEESFSEVYKAYIEFIGSRKAICCIWGTSDMKILFKNILY 117

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            +            I   +      PS +              +  + H AL D++  ++
Sbjct: 118 HKLDPAPFPRMFINIQPYTSIYLGLPSKKLLRLQDAVNMLQIPTSTAFHLALSDAYYTAE 177

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           ++ K+       N        +  +  KK +   +L+K+   ++ R   EE   
Sbjct: 178 IFKKVYQPSITPNCYDPYEASKLSRPAKKHIDFDALIKQFVKMYHRPMTEEEQA 231


>gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
           43183]
 gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
           43183]
          Length = 328

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 5/148 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+GL     R++ +  + L         F   L P      P  + +HG+T E L
Sbjct: 18  VVDVETSGLRPDRHRVLSLAVLTLRPDGHLVEEFSTLLDPG---CDPGPVHIHGLTPERL 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P+F  +     +  +      +AHNA FD  F+  E  R         R+       
Sbjct: 75  RGAPTFDRVAERVAELLSG--RVMVAHNAAFDYAFLAHEFGRAGLHLPVEQRLCTLALGR 132

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKH 158
           R   P+    L++L   YG+        
Sbjct: 133 RIGLPTPDLRLSTLAAHYGVPQHRAHDA 160


>gi|237654661|ref|YP_002890975.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237625908|gb|ACR02598.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 482

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 7/163 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R    D+E+TG     DRI EI  + + D     R ++  + P G+   P   ++ GI+D
Sbjct: 6   RLAFIDVESTGAHPVRDRITEIAILRVEDGEVVAR-WESLVAP-GQPIPPLIEEVTGISD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + + P+F  +              ++AH+A+FD GFI     RI ++   P      L
Sbjct: 64  AMVAEAPAFEVLADTVAALLEG--CVFVAHSARFDYGFIRNAFTRIGREFEAPVLCTVKL 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           S A       R+ L++L +R+G+     ++H A+ D  +L   
Sbjct: 122 SRA-LYPEHHRHGLDALIERHGLVC--AARHRAMGDVEVLWQF 161


>gi|187478996|ref|YP_787020.1| exonuclease [Bordetella avium 197N]
 gi|115423582|emb|CAJ50118.1| putative exonuclease [Bordetella avium 197N]
          Length = 193

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 2/116 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGL +    I+E  AV +    +    +   +  NGR  S  A        E
Sbjct: 28  FVVADLETTGLSAHACEILEFAAVRVDTEGQIASEYSQLVRINGRVPSFIARLTGISQQE 87

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            ++D       F  F DF     A    HNA FD  F+ A   R  +   + +   
Sbjct: 88  VIRDGKPIDEAFRAFCDFVGT--APVFFHNASFDTRFLRATASRCGQAFDNDTHCT 141


>gi|268611881|ref|ZP_06145608.1| hypothetical protein RflaF_20541 [Ruminococcus flavefaciens FD-1]
          Length = 176

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 9/170 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ET   +  NDR+  IG   + D       F   + P          +L GI  E
Sbjct: 4   YIVFDVET--PNHANDRMSAIGITAVKDNKIVANYF-SLVDPETH-FDSFNTQLTGIDAE 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P+F +   +  +         +AHNA FD+  + + L+         +  + T+ 
Sbjct: 60  KVKDAPNF-AELWKKIEPIMS-KGILVAHNAVFDMSVLRSCLRSYGITWKPTAEYLCTVQ 117

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           I RR  P+ +++LN +C  YG        H A  D+H  +++ ++ M  G
Sbjct: 118 IGRRVLPNMKHNLNVMCDHYG---IALDHHQADSDAHACAEILLRYMESG 164


>gi|156743855|ref|YP_001433984.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM
           13941]
 gi|156235183|gb|ABU59966.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM
           13941]
          Length = 232

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDE 68
           V D+ETTGL+ + D ++ IG VE+     + +R +   +  P+    +PE++++HG+  +
Sbjct: 37  VMDVETTGLNPRRDALLAIGLVEIDEGRIRMDRRWYTLVHPPDDAPINPESIRIHGLLPQ 96

Query: 69  FLKDKPS 75
            ++  P 
Sbjct: 97  DVEHAPP 103


>gi|28899929|ref|NP_799584.1| putative DNA polymerase III, epsilon subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260363223|ref|ZP_05776092.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|260880510|ref|ZP_05892865.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260898537|ref|ZP_05907033.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|28808212|dbj|BAC61417.1| putative DNA polymerase III, epsilon subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308085005|gb|EFO34700.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308092696|gb|EFO42391.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308112379|gb|EFO49919.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
          Length = 236

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 48/167 (28%), Gaps = 4/167 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTG+D++ D+I+ IG V+L LD      + + ++C         A        
Sbjct: 52  FVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYICHGQFIKPETAKINGLTPQ 111

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +  K  P      +        +         +          +   +D          +
Sbjct: 112 DLAKGLP-LDEGMNRLLKRITGKVVLAHGCCIEKAFIHAYFSSRYQVEDFPAYFIDTLQI 170

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYI 172
                    S    +                 H A  D+   +++++
Sbjct: 171 EKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAELFL 217


>gi|24374295|ref|NP_718338.1| ribonuclease T [Shewanella oneidensis MR-1]
 gi|54036332|sp|Q8EDJ2|RNT_SHEON RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|24348836|gb|AAN55782.1|AE015715_1 ribonuclease T [Shewanella oneidensis MR-1]
          Length = 222

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 74/203 (36%), Gaps = 15/203 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S+ D ++EI    +++ D      ++T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNSQTDALLEIAVTLLKMDDEGLLGIDKTLHFHIEPFEGANLEPEALAFNG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                        +     +   +  +AHNA FD GF++  ++R +  
Sbjct: 80  IDPTNPLRGAVSEKDAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L   C   GI   ++  H AL D+   ++++  ++ 
Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCYIVN 199

Query: 177 GGSQINFG--FKTNEDRFFKEEK 197
               +       T+E      E+
Sbjct: 200 RWKTLGGWPLLATSESEDMDSEE 222


>gi|325286963|ref|YP_004262753.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489]
 gi|324322417|gb|ADY29882.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM
          7489]
          Length = 221

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALK 61
           +V D ETTG   + DR++ IGA++L +       +F+VF+  +        + 
Sbjct: 36 FVVLDTETTGFSYQEDRMLCIGALKLKNNDINIGDSFEVFIHQDHYNQETAEIH 89


>gi|321309654|ref|YP_004191983.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801498|emb|CBY92144.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           haemofelis str. Langford 1]
          Length = 1393

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 53/192 (27%), Gaps = 9/192 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFDIETTGL+   D I EI   +  +  +   T+  +          +          
Sbjct: 351 YCVFDIETTGLNPLFDEITEIAIYKYSNKRRIA-TYHSYFK---ISEPLKQHIKDLTHIT 406

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI----I 124
                     +     +  +      +  +   +  F     + I       S      +
Sbjct: 407 DELLAEKGQDLEVVLKEVKDFTQGSVLVAHNGIEFDFPFLNAKYIKLGMEPLSNPLIDTL 466

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV-GGSQINF 183
                   +     + L ++CKR G+       H A  D  +L  V++  +     +   
Sbjct: 467 RLSQTIFSEEKYKSHSLGAICKRVGVEYDLEHAHSADFDVDVLWQVFMYSLEPKLKEWGV 526

Query: 184 GFKTNEDRFFKE 195
             +         
Sbjct: 527 NLEDGLKEANDA 538


>gi|254974887|ref|ZP_05271359.1| putative exonuclease [Clostridium difficile QCD-66c26]
 gi|255092274|ref|ZP_05321752.1| putative exonuclease [Clostridium difficile CIP 107932]
 gi|255314014|ref|ZP_05355597.1| putative exonuclease [Clostridium difficile QCD-76w55]
 gi|255516694|ref|ZP_05384370.1| putative exonuclease [Clostridium difficile QCD-97b34]
 gi|255649792|ref|ZP_05396694.1| putative exonuclease [Clostridium difficile QCD-37x79]
 gi|306519894|ref|ZP_07406241.1| putative exonuclease [Clostridium difficile QCD-32g58]
          Length = 258

 Score = 57.3 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 80/236 (33%), Gaps = 23/236 (9%)

Query: 7   MRKIVFDIETTGLDSKND--------------RIIEIGAVELLDYSKTNRTFQVFLCPN- 51
           M  I+FD+E    +   D               II+IGA++L        TF  ++ P  
Sbjct: 1   MEYIIFDLE---FNQGFDKKLNKTVSNEKCPFEIIQIGAIKLDSKFNIIDTFNSYVKPTI 57

Query: 52  GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAE 109
            +   P   ++  I +    D P+F  +++ F  F + Q+            ++      
Sbjct: 58  YKDIHPFISRMTNIKNSDFNDSPTFPEVYNNFIKFISSQDPILCVWGVGDLKELYRNINY 117

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            +  +         I   +     +P+ ++                S H AL D++  + 
Sbjct: 118 HKLPSSSLPKSYINIQQHASKYFNNPAGKSIGLQNAISILELDEKMSYHNALNDAYYTAK 177

Query: 170 VYIKMMVGGSQINFGFKTN--EDRFFKEEKKTVPNISLLKRDKPLFTR-ITKEELD 222
           V+IK+       +    T+          KK V    L    + +  R +TK+E  
Sbjct: 178 VFIKIYNPSIVPDIYLYTSIKPKTIRYSNKKRVDYDKLFDEFRKILNRELTKDEKK 233


>gi|255534253|ref|YP_003094624.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium
           3519-10]
 gi|255340449|gb|ACU06562.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium
           3519-10]
          Length = 407

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 80/224 (35%), Gaps = 8/224 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIE+ G   + + IIEI   +   +   ++ F   + P          KL  I+ + +
Sbjct: 4   VIDIESNGAGFRKESIIEIAVYKYDGHEIVDQ-FISLVNPESEITP-FVQKLTKISPKMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K  P F  I     +    +N   + HN  FD   +  E +R+  D    +     L+  
Sbjct: 62  KTAPKFPEIARRVIE--ITRNTILVGHNIDFDYRMLRQEFKRLGYDFTINTLDTIPLAKK 119

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
                +    L  L K  GI      +H A  D+    D++  +++         + +E+
Sbjct: 120 LIPE-AESYSLGKLVKSLGIP--LVDQHRASGDARATLDLFKLLLIKDKNSEIIQQHHEE 176

Query: 191 RFFKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTLGK 233
              K     V N++  L   + +      E    +   +  L K
Sbjct: 177 SNGKTYLNKVRNLTQDLPAARGIIYMQNAEGKIIYFDFVDDLSK 220


>gi|256381025|ref|YP_003104685.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum
          DSM 43827]
 gi|255925328|gb|ACU40839.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum
          DSM 43827]
          Length = 382

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
          M   V D+ETTG   ++DR++E+  V+L  D   T   +   L P           +H I
Sbjct: 1  MGYAVVDVETTGFR-RSDRVVEVAVVQLDRDRRVTGE-WCTLLNPGRDLGP---QHVHRI 55

Query: 66 TDEFLKDKPSF 76
              +   P+F
Sbjct: 56 RAADVWGAPTF 66


>gi|300779647|ref|ZP_07089503.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
 gi|300533757|gb|EFK54816.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
          Length = 238

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTG+   ND I+EIG V L        T++  + P+    + +   +     +
Sbjct: 20  YAVIDFETTGMR-DNDAIVEIGVVLLDKDLSVEDTWEALVNPHRLILNTDVHGIEEDDVD 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P+ +  F              +AH+A ++  ++  E +R   D   P   IDT+ 
Sbjct: 79  RGLTFPALAGYFKHL-----LHGRTLVAHDATYEKRYLRYEFERWGMDDTVPDTWIDTMQ 133

Query: 129 IARRK 133
           ++ R 
Sbjct: 134 LSSRY 138


>gi|255029619|ref|ZP_05301570.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes LO28]
          Length = 132

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + R IV D+ETTG  + + DRII+  A  +    +   T+  FL P  +       +L 
Sbjct: 2   KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           GI+ + +K+ P F  +     +   +    ++AHN  FD  F+  E+
Sbjct: 60  GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104


>gi|42519676|ref|NP_965606.1| hypothetical protein LJ0649 [Lactobacillus johnsonii NCC 533]
 gi|41583965|gb|AAS09572.1| hypothetical protein LJ_0649 [Lactobacillus johnsonii NCC 533]
          Length = 320

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 5/170 (2%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
            D+ETTGL    DRI E+G +++        TF   +  P+  K      KL+GI +  +
Sbjct: 36  IDVETTGLSPYRDRITEMGGLKVRHGEVVA-TFSELVKFPDSNKVPAFITKLNGIDETTI 94

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++K        + +  F   +   + +N  FD+ F+    ++ +   L+   +       
Sbjct: 95  EEKGLPVQEAIKKYREFIGSDPI-VGYNVNFDLNFVYDLAEKYHLTVLNNDYVDVYRLAR 153

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                   N L      + + I+   +H  L D      V+ +      Q
Sbjct: 154 SFYPQEQHNRLLDC--MHRLDIAETQEHRGLDDCLDTKKVFDEFHKLFKQ 201


>gi|306833904|ref|ZP_07467028.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis
           ATCC 700338]
 gi|304423905|gb|EFM27047.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis
           ATCC 700338]
          Length = 827

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 8/181 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++ N  +  + D+E TG  +    II++G V + +     +T+Q  + P+    S   +
Sbjct: 1   MMQVNSQKYAIVDLEATGAHAM-AEIIQVGIVIIENDEIV-KTYQTDVNPHEA-LSEHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITDE L   P FS +  E ++   +    ++AHN KFD   +    Q   +     
Sbjct: 58  NLTGITDEQLAKAPDFSQVAQEIFNLIED--CVFVAHNVKFDANLLA--EQLFMEGYELR 113

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  +DT+ +A+  +P+             + +     H A+ D++  + +++K+      
Sbjct: 114 TPRVDTVELAQVFYPTFEKYSLGNLADV-LALDLADAHTAISDAYATAQLFLKLKAKMKS 172

Query: 181 I 181
           +
Sbjct: 173 L 173


>gi|227328518|ref|ZP_03832542.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 223

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 72/199 (36%), Gaps = 13/199 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++E+ AV L      + K + T    + P  G    P AL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLKPDETLHFHVEPFEGAILEPAALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAAERCSLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D++  + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCELVN 199

Query: 177 GGSQINFGFKTNEDRFFKE 195
              ++       E+   ++
Sbjct: 200 RWKRLGGWPIALEENSLED 218


>gi|86130781|ref|ZP_01049380.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134]
 gi|85818192|gb|EAQ39352.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134]
          Length = 1463

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 67/229 (29%), Gaps = 19/229 (8%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL    +          R I+I      +  +        + P+G     +
Sbjct: 2   YLIFDTETTGLPKNWNAPITDSDNWPRCIQIAWQLHDEMGQVIEHQDYLVKPDGFDIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A ++HGI+    +      S   E ++    Q    +  N  FD   + AE  R+N    
Sbjct: 62  AERIHGISTALAEKDGVALSEVLENFNIALSQAKYVVGQNVGFDTNIMGAEFHRLNIGND 121

Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                +      +                    +   ++         H A  D    + 
Sbjct: 122 LQELPVLDTCTEKTATLCQLPGGRGGKFKLPTLTELHKHLFGEGFGEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
            +++++              D F +  +     I  +        + ++
Sbjct: 182 CFLELIRQRVYTKEELDVQPDYFDRFSQANPQPIEFIGLKHINLKKASE 230


>gi|262274601|ref|ZP_06052412.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
 gi|262221164|gb|EEY72478.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
          Length = 245

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D+ETTGLD   + II IG V   LD           + P  R    E++  HGIT 
Sbjct: 55  FVALDLETTGLDPSQNDIISIGLVPFTLDRIYCRDAKHWIVKP-RRPLEAESVVFHGITH 113

Query: 68  EFLKDKP 74
             + D P
Sbjct: 114 SDVSDAP 120


>gi|271500216|ref|YP_003333241.1| ribonuclease T [Dickeya dadantii Ech586]
 gi|270343771|gb|ACZ76536.1| ribonuclease T [Dickeya dadantii Ech586]
          Length = 226

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L      + + + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDDTLHFHIEPFEGAILRPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                        +     N   A  +AHNA FD  F+ A  +R    
Sbjct: 80  IDPSNPLRGAVSEYDALHDIFKAVRKGIKDQNCNRAIIVAHNATFDHSFLMAAAERCGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C    I       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACIAAEIPFDASQAHSALYDTERTAQLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRMG 205


>gi|153008625|ref|YP_001369840.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC
           49188]
 gi|151560513|gb|ABS14011.1| Exonuclease RNase T and DNA polymerase III [Ochrobactrum anthropi
           ATCC 49188]
          Length = 332

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF 47
           +V D ETTGL+   + IIEIGAV     D          F
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATF 113


>gi|330888790|gb|EGH21451.1| exonuclease [Pseudomonas syringae pv. mori str. 301020]
 gi|330987665|gb|EGH85768.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331011360|gb|EGH91416.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 203

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 3/168 (1%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF           +             +  ++      ++  
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGATPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 120

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +           L S  +      +HR+   A + ++L + +  ++
Sbjct: 121 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 168


>gi|330870427|gb|EGH05136.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 203

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 3/168 (1%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF           +             +  ++      ++  
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGATPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 120

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +           L S  +      +HR+   A + ++L + +  ++
Sbjct: 121 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 168


>gi|330812208|ref|YP_004356670.1| DNA polymerase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327380316|gb|AEA71666.1| putative DNA polymerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 235

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 63/177 (35%), Gaps = 4/177 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D+ETTGL+   D+++ IGAV + D +   ++ F+  L  + +K  P  L      
Sbjct: 40  RWVVLDLETTGLNLNKDQVLSIGAVVIEDGAIDFSQQFERTLQCDKQKLGPSVLIHGLAP 99

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                      ++ +         ++  +A +A FD   +   L+      L  S +   
Sbjct: 100 SAIAAGSDPAEALLAFME---FVGDSPLLAFHAPFDSHMLGRALKDYLGYRLQHSFLDVA 156

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                    ++              +    +H A  D+   +++ + +     Q   
Sbjct: 157 DLAPMLCPQANLRKSGLDEWIDWFKLQVFDRHNASADALATAELALILFSRARQQQI 213


>gi|289649837|ref|ZP_06481180.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 204

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 3/168 (1%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 4   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF           +             +  ++      ++  
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGATPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +           L S  +      +HR+   A + ++L + +  ++
Sbjct: 122 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 169


>gi|289627588|ref|ZP_06460542.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681]
          Length = 204

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 3/168 (1%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 4   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF           +             +  ++      ++  
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGATPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +           L S  +      +HR+   A + ++L + +  ++
Sbjct: 122 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 169


>gi|257482174|ref|ZP_05636215.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|298488861|ref|ZP_07006886.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156614|gb|EFH97709.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 204

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 3/168 (1%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 4   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF           +             +  ++      ++  
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGATPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +           L S  +      +HR+   A + ++L + +  ++
Sbjct: 122 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 169


>gi|258422513|ref|ZP_05685421.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9635]
 gi|257847270|gb|EEV71276.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9635]
          Length = 897

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +      T+   +     +  P    L  I ++
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEK 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D   +    ++AHN  FD+ FI    +  N        I     
Sbjct: 64  MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       L+ L + +GIT    + H A  D+   + + I       ++   
Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175


>gi|257430810|ref|ZP_05607192.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257278938|gb|EEV09557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 68-397]
          Length = 905

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +      T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D   +    ++AHN  FD+ FI    +  N        I     
Sbjct: 64  MLQQAPYFNQVAEEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       L+ L + +GIT    + H A  D+   + + I       ++   
Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175


>gi|89890830|ref|ZP_01202339.1| DNA polymerase III [Flavobacteria bacterium BBFL7]
 gi|89516975|gb|EAS19633.1| DNA  polymerase III [Flavobacteria bacterium BBFL7]
          Length = 453

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 74/195 (37%), Gaps = 7/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + D+ETTG     + I EI   +   +   ++ F   + P         +KL GI ++
Sbjct: 2   YAIVDVETTGGKFNEEGITEIAIYKFDGHEIVDQ-FASLVNPEKEIQP-FVVKLTGINNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  +     +         +AHNA FD   +  E +R+  +    ++ + T+ 
Sbjct: 60  MLARAPKFYEVAKRIIEIMQG--TVLVAHNANFDYRMLRIEFERLGYE--FHTQTLCTVE 115

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +A++  P   +       R  + I    +H A  D+     ++  +M   S       + 
Sbjct: 116 LAQQLMPEEESYSLGKLTRS-LGIPITDRHRATGDALATVKLFKMLMAKDSDKTIISTSL 174

Query: 189 EDRFFKEEKKTVPNI 203
           +    K+ +  +  +
Sbjct: 175 KSETRKKVEPNLKKL 189


>gi|328951319|ref|YP_004368654.1| Exonuclease RNase T and DNA polymerase III [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451643|gb|AEB12544.1| Exonuclease RNase T and DNA polymerase III [Marinithermus
           hydrothermalis DSM 14884]
          Length = 185

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 61/178 (34%), Gaps = 10/178 (5%)

Query: 7   MRKIV---FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALK 61
           MR++V    D+ET+GL+ + D+I+ +G V +     +    F   + P          LK
Sbjct: 1   MRRVVYWALDVETSGLNPRRDQILAVGMVPVRGGAVRCREAFYSLVRPPSPAVVPLWGLK 60

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINKD 116
            H I    L+  P  + +  E             +A       +     +          
Sbjct: 61  AHHIRPVELRGAPPLAEVLREVDRRLRGGALLVHHAAVDVAFLRRAYRALGWPWPAPRVV 120

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                        A  +   +   L+    R  + +    +H AL+D+   +++++ +
Sbjct: 121 DTARLLERLARRRALLEPYRAPPPLDLAGARAYLGLPPYPQHHALVDALATAELFLAL 178


>gi|295400147|ref|ZP_06810127.1| Exonuclease RNase T and DNA polymerase III [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977926|gb|EFG53524.1| Exonuclease RNase T and DNA polymerase III [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 245

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 64/175 (36%), Gaps = 8/175 (4%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + D+ETTG   +  D I+ + A + +       T+   +CP  +   P    L GIT + 
Sbjct: 66  IIDMETTGFSPQHGDEILAMAAAKTV-RGAVKETYYTLVCPE-KAIPPHISALTGITAKD 123

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P        F  F +      I ++   D+ F+N  L    +             +
Sbjct: 124 VQYAPRLHEALRSFLSFISG--GVMIGYHIGHDLAFLNHFLWTHYRTKWAARFFDMQPIV 181

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
              +        ++L       IS   +H A  D   +++++ +++    + N  
Sbjct: 182 EMVQRRWFPTLDDAL---GHYGISCERRHTADGDVWAMAELWAQLLAELKRNNIE 233


>gi|294789265|ref|ZP_06754503.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Simonsiella muelleri ATCC 29453]
 gi|294482690|gb|EFG30379.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Simonsiella muelleri ATCC 29453]
          Length = 450

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+E TG    +DRI EI  +     +     F   + P  ++ S    +L GI++E 
Sbjct: 20  VILDLEATGGHFMHDRITEIAFLRFDGQNV--ERFTQLVNPQ-KEISEFVTQLTGISNEM 76

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P+F+ +            +  +AHN++FD  +     +         +  + T+ +
Sbjct: 77  VANAPTFADVIPHILPMLRG--SLLVAHNSRFD--YTLLRNEFRRAGVPFATPTLCTVKL 132

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +P+                S   +H A  D  +L+D     +
Sbjct: 133 SRTLYPNEHKHNLDAVANRFGLTSDGKRHRAWADVAILADFLQAAL 178


>gi|260221319|emb|CBA29763.1| hypothetical protein Csp_A13780 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 307

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 63/231 (27%), Gaps = 16/231 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTN------RTFQVFLCPNGRKNSPEALKLHG 64
           V D ETTGLD   ++IIE+  + +   + T       + +     P G+   PE + + G
Sbjct: 41  VLDTETTGLDQAKEKIIELALLRVDIDTATGLPVGPVQVYDGLEDP-GKAIPPEVVAITG 99

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I D  ++ +    +  +E     +   A     +  F    + A                
Sbjct: 100 IQDADVQGQALDEARVAELMQGVDVVIAHNAGFDRPFVESRLPAFAALPWACSFADLDWK 159

Query: 125 DTLSIARRKH--------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                + +              +     C      ++                    ++ 
Sbjct: 160 SLGRSSAKLESLAQELGLFYDAHRAEMDCHALLAVLAAPLPQTQSTSPGANRTGLAHLLQ 219

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
                ++        F  ++             +    R++ ++   H + 
Sbjct: 220 SARNPSYRLSATNAPFEAKDLLKARGYRWNADQRVWAARLS-DDAALHAEF 269


>gi|330969506|gb|EGH69572.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 203

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 7/207 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRT--REQSFACS 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +ARR  P + N       RY         H A+ D+ + +++   +     Q +    
Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTAHLTNELRQTHGISA 176

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLF 213
            +       +K     IS   + +   
Sbjct: 177 ISHQMLCSLQKVPAAKISETLKRQRGV 203


>gi|228470614|ref|ZP_04055471.1| exonuclease [Porphyromonas uenonis 60-3]
 gi|228307741|gb|EEK16717.1| exonuclease [Porphyromonas uenonis 60-3]
          Length = 189

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 62/168 (36%), Gaps = 8/168 (4%)

Query: 9   KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            I  D ET TG   +   I E+G   + +  +   T    + P G + S   ++ HGI  
Sbjct: 6   FIAIDFETATG---QRTSICEVGICLVRNG-EIAETRSWLVQPEGNRYSYWNMQCHGIRP 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E  K  PSF+ ++ E  + +  + A  +AHN  FD   +    Q       +        
Sbjct: 62  EDTKRAPSFAEVWQEIAEQYIGEGALLVAHNVPFDRSCLEQAAQLYELTLPELQWDCSLR 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +                  ++I     H A  D+ + + +Y++ +
Sbjct: 122 RARQIYDYGCHTL---AYLCEQLSIPEGRHHRAGDDAEMCARLYLREL 166


>gi|66047527|ref|YP_237368.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           syringae B728a]
 gi|63258234|gb|AAY39330.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           syringae B728a]
          Length = 204

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 7/207 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 4   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRT--REQSFACS 117

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +ARR  P + N       RY         H A+ D+ + +++   +     Q +    
Sbjct: 118 LLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTAHLTNELRQTHGISA 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLF 213
            +       +K     IS   + +   
Sbjct: 178 ISHQMLCSLQKVPAAKISETLKRQRGV 204


>gi|326407322|gb|ADZ64393.1| ATP-dependent DNA helicase DinG [Lactococcus lactis subsp. lactis
           CV56]
          Length = 794

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 21/229 (9%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           KN  R  V D+E T   S  ++II+IG V + D      TF   + P+         +L 
Sbjct: 2   KNMTRYAVVDLEATDAHSSENKIIQIGIVLVEDGEIV-ETFSTEVNPHEPLLP-RISELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G++D+ LK  P FS + ++  +   +  + ++AHNA+FD G +         +  +  R+
Sbjct: 60  GLSDKQLKTAPEFSEVAAKVRELLTD--SVFVAHNARFDYGLLEKSFLNAGLEFNEMLRV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI----------- 172
                         +  L SL ++  +   H   H A+ D++  +++ +           
Sbjct: 118 DTVDLARVFYPTFEKYGLESLSEKLDLAHDHP--HAAVSDAYATAELLLKIEAKIQKLPR 175

Query: 173 ----KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
               +++     + F  KT       + K       ++        R +
Sbjct: 176 SVLEELLRHSDNLLFESKTFLQEQLDKTKIRPAGFKVVHNIATRKFRAS 224


>gi|281492444|ref|YP_003354424.1| ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
           [Lactococcus lactis subsp. lactis KF147]
 gi|281376108|gb|ADA65599.1| ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit
           [Lactococcus lactis subsp. lactis KF147]
          Length = 794

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 21/229 (9%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           KN  R  V D+E T   S  ++II+IG V + D      TF   + P+         +L 
Sbjct: 2   KNMTRYAVVDLEATDAHSSENKIIQIGIVLVEDGEIV-ETFSTEVNPHEPLLP-RISELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G++D+ LK  P FS +  +  +   +  + ++AHNA+FD G +         +  +  R+
Sbjct: 60  GLSDKQLKTAPEFSEVAGKVRELLTD--SVFVAHNARFDYGLLEKSFLNAGLEFNEMLRV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI----------- 172
                         +  L SL ++  +   H   H A+ D++  +++ +           
Sbjct: 118 DTVDLARVFYPTFEKYGLESLSEKLDLAHDHP--HAAVSDAYATAELLLKIEAKIQKLPR 175

Query: 173 ----KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
               +++     + F  KT       + K       ++        R +
Sbjct: 176 SVLEELLRHSDNLLFESKTFLQEQLDKTKIRPAGFKVVHNIATRKFRAS 224


>gi|191638483|ref|YP_001987649.1| ATP-dependent helicase DinG [Lactobacillus casei BL23]
 gi|190712785|emb|CAQ66791.1| ATP-dependent helicase DinG [Lactobacillus casei BL23]
 gi|327382518|gb|AEA53994.1| ATP-dependent helicase [Lactobacillus casei LC2W]
 gi|327385715|gb|AEA57189.1| ATP-dependent helicase [Lactobacillus casei BD-II]
          Length = 928

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K  DR+I+ G   +       +T    + P+ R       +L G+  
Sbjct: 7   FAVVDLETTGTSVKDGDRMIQFGCALMQHGKII-QTISQLVNPD-RSVPVAIQRLTGLDP 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
             L   P F  I         +        N  +
Sbjct: 65  NRLVAAPYFEEIAKTLHQLLTDTVFVAHNVNFDY 98


>gi|15673814|ref|NP_267989.1| DinG [Lactococcus lactis subsp. lactis Il1403]
 gi|12724861|gb|AAK05930.1|AE006413_6 ATP-dependent helicase DinG [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 794

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 21/229 (9%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           KN  R  V D+E T   S  ++II+IG V + D      TF   + P+         +L 
Sbjct: 2   KNMTRYAVVDLEATDAHSSENKIIQIGIVLVEDGEIV-ETFSTEVNPHEPLLP-RISELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G++D+ LK  P FS + ++  +   +  + ++AHNA+FD G +         +  +  R+
Sbjct: 60  GLSDKQLKTAPEFSEVAAKVRELLTD--SVFVAHNARFDYGLLEKSFLNAGLEFNEMLRV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI----------- 172
                         +  L SL ++  +   H   H A+ D++  +++ +           
Sbjct: 118 DTVDLARVFYPTFEKYGLESLSEKLDLAHDHP--HAAVSDAYATAELLLKIEAKIQKLPR 175

Query: 173 ----KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
               +++     + F  KT       + K       ++        R +
Sbjct: 176 SVLEELLRHSDNLLFESKTFLQEQLDKTKIRPAGFKVVHNIATRKFRAS 224


>gi|116494972|ref|YP_806706.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334]
 gi|116105122|gb|ABJ70264.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334]
          Length = 928

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K  DR+I+ G   +       +T    + P+ R       +L G+  
Sbjct: 7   FAVVDLETTGTSVKDGDRMIQFGCALMQHGKII-QTISQLVNPD-RSVPVAIQRLTGLDP 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
             L   P F  I         +        N  +
Sbjct: 65  NRLVAAPYFEEIAKTLHQLLTDTVFVAHNVNFDY 98


>gi|330684981|gb|EGG96656.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU121]
          Length = 902

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   +        T+   +        P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDYDDIIQIGITFVRQNKIIG-TYHSMIR-TDLDIPPFIQALTSIEET 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  + +    +    ++AHN  FD+ FI    +  N        +     
Sbjct: 64  MLEQAPYFKEIAQDIYQQLQD--CVFVAHNVAFDLNFIKKAFKNCNIKYRPKRVMDTLEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       L+ L + +   I   + H A  D+   + + IK      Q+   
Sbjct: 122 FKIAFPTDKSYQLSELAEAH--DIPLNNAHRADEDATTTAHLMIKAFEKFEQLPLD 175


>gi|49483644|ref|YP_040868.1| hypothetical protein SAR1466 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425521|ref|ZP_05601946.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428180|ref|ZP_05604578.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257433568|ref|ZP_05609926.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436410|ref|ZP_05612457.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282904038|ref|ZP_06311926.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905803|ref|ZP_06313658.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908773|ref|ZP_06316591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911034|ref|ZP_06318836.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914246|ref|ZP_06322033.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M899]
 gi|282919169|ref|ZP_06326904.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282924353|ref|ZP_06332027.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C101]
 gi|283958220|ref|ZP_06375671.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293501272|ref|ZP_06667123.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510233|ref|ZP_06668941.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M809]
 gi|293526828|ref|ZP_06671512.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295427965|ref|ZP_06820597.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297591065|ref|ZP_06949703.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|81828017|sp|Q6GGV4|DING_STAAR RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|49241773|emb|CAG40464.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271978|gb|EEV04116.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275021|gb|EEV06508.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257281661|gb|EEV11798.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284692|gb|EEV14812.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282313740|gb|EFB44133.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C101]
 gi|282316979|gb|EFB47353.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282322314|gb|EFB52638.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M899]
 gi|282324729|gb|EFB55039.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327037|gb|EFB57332.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282331095|gb|EFB60609.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595656|gb|EFC00620.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus C160]
 gi|283790369|gb|EFC29186.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920386|gb|EFD97450.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291096277|gb|EFE26538.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291467177|gb|EFF09695.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M809]
 gi|295128323|gb|EFG57957.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297575951|gb|EFH94667.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312438140|gb|ADQ77211.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195353|gb|EFU25740.1| hypothetical protein CGSSa00_06780 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 897

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +      T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D   +    ++AHN  FD+ FI    +  N        I     
Sbjct: 64  MLQQAPYFNQVAEEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       L+ L + +GIT    + H A  D+   + + I       ++   
Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175


>gi|289550389|ref|YP_003471293.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01]
 gi|315660145|ref|ZP_07913002.1| exonuclease [Staphylococcus lugdunensis M23590]
 gi|289179921|gb|ADC87166.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01]
 gi|315494826|gb|EFU83164.1| exonuclease [Staphylococcus lugdunensis M23590]
          Length = 186

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 51/173 (29%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V+++D   T  +F   + P     S + + +HGI  E
Sbjct: 8   FVALDFET--ANGKRTSICSVGMVKVIDNQIT-ESFHTLINPQD-YFSKKNINVHGINPE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F  +F     F               +V   + +   I    L          
Sbjct: 64  DVIHAPQFDYVFPYMLQFIANLPVVAHNAAFDMNVLHQSLKQAGIITPDLTYFCSYQLAK 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                       +                H AL D+   + +  +++     +
Sbjct: 124 RTIDAPRYGLKHMMDFYNL-----DFHGHHDALNDAKACAMITFRLLQHYDDL 171


>gi|269139030|ref|YP_003295731.1| ribonuclease T [Edwardsiella tarda EIB202]
 gi|267984691|gb|ACY84520.1| ribonuclease T [Edwardsiella tarda EIB202]
 gi|304558963|gb|ADM41627.1| Ribonuclease T [Edwardsiella tarda FL6-60]
          Length = 254

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D+  + ++EI AV   + D    +T++     + P  G   SPEAL  +G
Sbjct: 53  VVIDVETAGFDANRNALLEIAAVTLRMNDDGWLETDQCLHFHITPFEGAVLSPEALAFNG 112

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +   +  +         A  +AHNA FD  F+ A  +R    
Sbjct: 113 IDPHNPLRGAVSEYTALHAIFKMVRKGIKDQACNRAVVVAHNAHFDHSFLMAAAERAGLK 172

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C    I       H AL D+   + ++ +++ 
Sbjct: 173 RNPFHPFATFDTAALSGLVLGQTVLAKACLSAEIPFDSAQAHSALYDTQQTATLFCELVN 232

Query: 177 GGSQIN 182
              ++ 
Sbjct: 233 RWKRLG 238


>gi|170764037|ref|ZP_02630402.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens E str. JGS1987]
 gi|170664085|gb|EDT16768.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens E str. JGS1987]
          Length = 876

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 11/213 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             IVFD+E+TG+D   D II+I A++L    +    F+ FL     K S +         
Sbjct: 509 NIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLK---NKKSVKDSYYVHGFS 565

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +                +++  + HN ++D+  + +EL+R N          DTL
Sbjct: 566 DEMLQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERSNLGKPKFKTFYDTL 625

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-------IKMMVGGSQ 180
            I RR +P + N       +      H+  H A+ D     ++        I+       
Sbjct: 626 DIYRRFYPGNINYKLENLSKV-YDTKHKPSHDAMDDIIATGELLVRAINEKIRETSMERM 684

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
                         ++   +  I+  KR   L 
Sbjct: 685 ALMSKHLKAFTAISKKLNELFKIAESKRPYELV 717


>gi|167816919|ref|ZP_02448599.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 91]
          Length = 346

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EIG V +     +  T+   + P  +   P   +L GITD  +
Sbjct: 17  FVDLETTGGSAAEHRITEIGVVVVNANGTS--TWTTLVDPQ-QPIPPFIQQLTGITDAMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  P+F+ I    ++  +     ++AHNA FD GF
Sbjct: 74  RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106


>gi|53720167|ref|YP_109153.1| DNA polymerase/helicase [Burkholderia pseudomallei K96243]
 gi|52210581|emb|CAH36564.1| possible DNA polymerase/helicase [Burkholderia pseudomallei K96243]
          Length = 381

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EIG V +     +  T+   + P  +   P   +L GITD  +
Sbjct: 17  FVDLETTGGSAAEHRITEIGVVVVNANGTS--TWTTLVDPQ-QPIPPFIQQLTGITDAMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  P+F+ I    ++  +     ++AHNA FD GF
Sbjct: 74  RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106


>gi|302184787|ref|ZP_07261460.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           syringae 642]
          Length = 203

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 7/175 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRT--REQSFACS 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           L +ARR  P + N       RY         H A+ D+ + +++ + +     Q 
Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTVHLTNELRQT 171


>gi|260591576|ref|ZP_05857034.1| exonuclease [Prevotella veroralis F0319]
 gi|260536376|gb|EEX18993.1| exonuclease [Prevotella veroralis F0319]
          Length = 164

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 6/167 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   +  +G V +        +F   + P          ++HG+T  
Sbjct: 4   FAAIDFET--ANFERCSVCSVGMVIVRGGEIV-DSFYSLIQPEPNYYHWRCTQVHGLTCA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P F  ++ +            +AHNA FD G + A L     D L+        +
Sbjct: 61  DTDGAPVFCEVWKQIEPMIEG--LPLVAHNAPFDKGCLRACLMTYQMDYLNYEFFDTLKA 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                     + L ++    G  +++   H AL D+   + +  +++
Sbjct: 119 ARHILPHLPNHQLQTVAAACGYDLTNH-HHHALADAEACAWIAKEIL 164


>gi|222151350|ref|YP_002560506.1| hypothetical protein MCCL_1103 [Macrococcus caseolyticus JCSC5402]
 gi|222120475|dbj|BAH17810.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 850

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 6/166 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  V DIETTG +  +D II++G   + +      T+  F+     +       L  I  
Sbjct: 4   KYAVVDIETTGNNLDSDEIIQVGIAIVQNKKII-ETYDTFI-ACNNEIPAFIQSLTKIDA 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L D P+FS + S      +     ++AHN +FD+ F+                I    
Sbjct: 62  FDLVDAPNFSHVASHIIKLLDG--CVFVAHNVQFDLRFLQKYFSEAGHKFQPRYIIDTVD 119

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                     R  L S+    GI     S H A+ D+   ++V+I+
Sbjct: 120 WFKIVYPSLERYQLKSIADDLGIE--LSSAHRAIDDAVATAEVFIE 163


>gi|251793080|ref|YP_003007806.1| ribonuclease T [Aggregatibacter aphrophilus NJ8700]
 gi|247534473|gb|ACS97719.1| ribonuclease T [Aggregatibacter aphrophilus NJ8700]
          Length = 217

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLD--YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET GL++K + ++E+ A  V++ D  +   ++     + P  G    PE++K +G
Sbjct: 23  VIIDVETAGLNAKTNALLELAAITVKMDDNGHLVPDQKCHFHIQPFEGANIDPESIKFNG 82

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                  +          Q +  +AHNA FD GFI A  QR N  
Sbjct: 83  IDIDNPLRGAISENIAISEMFKMVRRAQKDAECQRSIIVAHNAAFDQGFIMAAAQRTNAK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I       H AL D+   ++++  M+ 
Sbjct: 143 RNPFHPFSTFDTATLSGFMFGQTVLIKACQAAKIPFDGSQAHSALYDTERTAELFCYMVN 202

Query: 177 GGSQIN 182
               + 
Sbjct: 203 HLKTLG 208


>gi|254525958|ref|ZP_05138010.1| exonuclease [Prochlorococcus marinus str. MIT 9202]
 gi|221537382|gb|EEE39835.1| exonuclease [Prochlorococcus marinus str. MIT 9202]
          Length = 259

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 71/230 (30%), Gaps = 12/230 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + ++ D ETTGLD   D +IEIG +          +  +F   +  N  ++         
Sbjct: 37  KILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNNEAEHVNGISADVT 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
              +  +D  +F     ++ DF        +AHN +FD  +               S   
Sbjct: 97  NISQPWEDGLNFFLKLVDYSDFI-------VAHNVEFDKKWFGKGRLPKLNKKWICSLED 149

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVGGSQIN 182
              S  +           +L     +   HR+       S +        ++++  ++  
Sbjct: 150 INWSFQKSLKSRPSVTDLALSFSIPVWNLHRALSDCFYISEVFKKCDNLEELLLKATEPR 209

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           F +K       +   K                ++T  E    D  ++ L 
Sbjct: 210 FLYKALVSYEERSLAKNAGFRWNSHVQGAWSRKLTTNEAKNLDFRVEILN 259


>gi|183599959|ref|ZP_02961452.1| hypothetical protein PROSTU_03480 [Providencia stuartii ATCC 25827]
 gi|188022234|gb|EDU60274.1| hypothetical protein PROSTU_03480 [Providencia stuartii ATCC 25827]
          Length = 234

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 5/163 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+ETTGLD + DRI+ IG V + D     ++    ++      N P   +   I     
Sbjct: 55  IDLETTGLDPEKDRILSIGMVTIADSKILLKSAQHYYVN----DNEPVKAETAVINHITP 110

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +      S+      F +E   + I  +         ++   I + PL     ++     
Sbjct: 111 EQLSDGVSLPHAIASFLHEAKGKCILAHGSAIEHAFLSKALNIKELPLLWFDTLNIEKTL 170

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                 +RND +    R    +     H AL D+   +++++ 
Sbjct: 171 LSHKNINRNDFSLSALRSRYQLPDYDAHNALSDAIATAELFLA 213


>gi|325288177|ref|YP_004263967.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489]
 gi|324323631|gb|ADY31096.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489]
          Length = 454

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 71/195 (36%), Gaps = 7/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ DIETTG     + I EI       +   ++ F   + P         +KL GI D+
Sbjct: 2   YVILDIETTGGKFNEEGITEIAIHRFDGHKVVDK-FISLVNPEKEIQP-FVVKLTGINDK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I     +    ++A  +AHNA+FD   +  E +R+  +    +     LS
Sbjct: 60  MLRTAPKFYEIAKRIVE--ITEDAVLVAHNAQFDYRILRTEFRRLGYNFERKTLCTVNLS 117

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   S +          + I    +H A  D+     ++  ++   S  +      
Sbjct: 118 KELIPDKESYSL---GKLVRSLGIPVSDRHRANGDALATLQLFKLLLAKDSNKSIIKTVI 174

Query: 189 EDRFFKEEKKTVPNI 203
           ++    E      N+
Sbjct: 175 KEGSMGELSDRQINL 189


>gi|296102681|ref|YP_003612827.1| ribonuclease T [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295057140|gb|ADF61878.1| ribonuclease T [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 216

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L    +   T + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEEGWLTPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +   +  +     N   A  +AHNA FD  F  A  +R +  
Sbjct: 80  IDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCSRAIMVAHNATFDHSFTMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   GI       H AL D+   ++++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACITAGIEFDGTQAHSALYDTERTAELFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|330815857|ref|YP_004359562.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia gladioli BSR3]
 gi|327368250|gb|AEA59606.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia gladioli BSR3]
          Length = 388

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 5/114 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  + + RI EIG VE+     +  T+   + P  +       +L GI+DE +
Sbjct: 17  FVDLETTGGSAADHRITEIGVVEVGPQGVS--TWTSLIDPQ-QPIPAFIQQLTGISDEMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +  P+FSSI +E +         +IAHNA FD GF+ AE +R            
Sbjct: 74  RGAPTFSSIAAELFARLEG--RLFIAHNASFDRGFLRAEFERAGFAFNPDMLCT 125


>gi|313768005|ref|YP_004061436.1| hypothetical protein BpV1_006c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599612|gb|ADQ91633.1| hypothetical protein BpV1_006c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 432

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 63/221 (28%), Gaps = 15/221 (6%)

Query: 7   MRKIVFDIETTGLD-------------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53
           M  I +D ETTGL                  R++ +  V+     +   ++   + P+  
Sbjct: 1   MNYIAWDTETTGLPMGYKKATPDNIHLFDKCRMLTLAFVKYSSKGRELSSYHGLVYPDTF 60

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQR 112
               E+  +HGIT E    K          +       +  +AHN+ FD         +R
Sbjct: 61  DVPQESTNVHGITHEHAIHKGQPFGYVYAAFKEAVSNTSILVAHNSSFDENCFFSECYRR 120

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                              R       +   L             H AL DS     +Y 
Sbjct: 121 GFDTEPFKHVHFVDTLKMARSVLPGLFNHKLLTVYKHYFGKEFDAHDALNDSRACGTIYP 180

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
            ++             +      +  ++  ++  K+ K + 
Sbjct: 181 -LLRDNEFKMKDVGIEKVTLKASDIASIIGMNPYKKPKEVL 220


>gi|225010791|ref|ZP_03701259.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria
          bacterium MS024-3C]
 gi|225004999|gb|EEG42953.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria
          bacterium MS024-3C]
          Length = 204

 Score = 56.9 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61
          + IV D ETTG D + +RI+ IGAV L         +F+V+L  +   +    + 
Sbjct: 18 KFIVIDTETTGFDYEKERILCIGAVLLEKSQIAVKDSFEVYLTQDHYNSDSTPIH 72


>gi|329298346|ref|ZP_08255682.1| ribonuclease T [Plautia stali symbiont]
          Length = 222

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A  +++ +      + T    + P  G   +PEAL   G
Sbjct: 20  VVIDVETAGFNAQTDALLEIAATTLKMDEDGWLHRDETLHFHVEPFEGAILNPEALAFTG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +         A  +AHNA FD  F+ A  +R    
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGTKDSGCNRAIIVAHNATFDHNFLMATAERTGMK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   CK  GI       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACKAAGIDFDSTQAHSALYDTKQTATLFCELVN 199

Query: 177 GGSQINFGFKTNEDRFFKEEKKT 199
              ++        +   +++   
Sbjct: 200 RWKRLGGWPLAVSEEPAEDDASA 222


>gi|261821926|ref|YP_003260032.1| ribonuclease T [Pectobacterium wasabiae WPP163]
 gi|261605939|gb|ACX88425.1| ribonuclease T [Pectobacterium wasabiae WPP163]
          Length = 223

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 71/199 (35%), Gaps = 13/199 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++E+ AV L      + + + T    + P  G    P AL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F+ A   R +  
Sbjct: 80  IDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAADRCSLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D++  + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCELVN 199

Query: 177 GGSQINFGFKTNEDRFFKE 195
              ++       E+   ++
Sbjct: 200 RWKRLGGWPLALEENAAED 218


>gi|119946100|ref|YP_943780.1| ribonuclease T [Psychromonas ingrahamii 37]
 gi|119864704|gb|ABM04181.1| RNAse T [Psychromonas ingrahamii 37]
          Length = 207

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE--LL--DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ DIET+GL+++ D I+EI A+   +    Y          + P  G    P+AL   G
Sbjct: 15  VIIDIETSGLNAQTDAILEIAAILPAMDSQGYLFAAEKIHFNVLPFEGANLDPKALAFTG 74

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         +  +AHNA FD GFIN   +R N  
Sbjct: 75  IDPFNPLRAAVDERDALTEIFKLVRKHQKQNLCNRSIIVAHNATFDQGFINKATERCNLK 134

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +     +   + +       +  L   C++  I   ++  H AL D+ + +D++  M+ 
Sbjct: 135 RMPFHPFVSFDTASMAGLILGQTVLAKACQQASIPYDNKQAHSALYDTEVTADLFFYMVN 194

Query: 177 GGSQIN 182
               + 
Sbjct: 195 KLKALG 200


>gi|50120858|ref|YP_050025.1| ribonuclease T [Pectobacterium atrosepticum SCRI1043]
 gi|81827142|sp|Q6D5W0|RNT_ERWCT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|49611384|emb|CAG74831.1| ribonuclease T [Pectobacterium atrosepticum SCRI1043]
          Length = 223

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 72/199 (36%), Gaps = 13/199 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++E+ AV L      + + + T    + P  G    P AL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPTNPLRGAVSEYDALHEIFKVVRKGIKDRGCNRAIIVAHNATFDHSFMAAAAERCSLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D++  + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCELVN 199

Query: 177 GGSQINFGFKTNEDRFFKE 195
              ++       E+   ++
Sbjct: 200 RWKRLGGWPLALEESSLED 218


>gi|88860421|ref|ZP_01135059.1| RNase T [Pseudoalteromonas tunicata D2]
 gi|88817619|gb|EAR27436.1| RNase T [Pseudoalteromonas tunicata D2]
          Length = 221

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 75/203 (36%), Gaps = 13/203 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI    +++ D      ++T    + P  G      A++ +G
Sbjct: 19  VVIDVETAGFNNQTDALLEIAVTTLKMDDEGVLSLDKTLHFHITPFEGANIEQAAIEFNG 78

Query: 65  ITDE--------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                       S+       Q +  +AHNA FD GF+NA ++R    
Sbjct: 79  IDPFSALRGAVEESIAFKEICKFVSKSQKDAGCQRSVIVAHNAAFDQGFVNAAVERCKIK 138

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + +       +  L   C   GI   +   H A+ D+   ++++  ++ 
Sbjct: 139 RTPFHPFVSFDTTSLAGLALGQTVLAKACIAAGIEFDNSQAHSAVYDTERTAELFCFIVN 198

Query: 177 GGSQINFGFKTNEDRFFKEEKKT 199
               +      NE     +E   
Sbjct: 199 KWQALGGWPIINEQEETSDEDVN 221


>gi|289550764|ref|YP_003471668.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180296|gb|ADC87541.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis
           HKU09-01]
          Length = 893

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 2/165 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   +        T+   +     +  P    L  I ++
Sbjct: 6   YAVVDLETTGNQLDYDEIIQIGITFVRGQKIVG-TYHSMIN-TDVEIPPFIQALTSIEED 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK  P F  +  + +    +        +          +   I+  P      ++   
Sbjct: 64  MLKQAPYFHEVAEDVYKQLKDSVFVAHNVSFDLTFIKKAFKRNHIHFQPKKVIDTVELFK 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           IA     S +    +      +  +HR+   A   + L+   + K
Sbjct: 124 IAFPTDKSYQLSELAEAHHIPLDNAHRADEDATTTAKLMIKAFQK 168


>gi|109948241|ref|YP_665469.1| DNA polymerase III subunit epsilon [Helicobacter acinonychis str.
           Sheeba]
 gi|109715462|emb|CAK00470.1| DNA polymerase III [Helicobacter acinonychis str. Sheeba]
          Length = 282

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +        L GI  E  
Sbjct: 70  FIDLETTGSCPLKHEILEIGAVQVSGGKIINR-FETLVK--VKSVPDYISDLTGIAYEDT 126

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 127 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 172


>gi|324990933|gb|EGC22868.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK353]
          Length = 814

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S   +II+IG V + +   T +T++  + P+         +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-GAKIIQIGIVLIENGIIT-KTYETDVNPH-EDLDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++   +  A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                L+         +  L +LC      IS  + H AL D+   + +++K+      +
Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172

Query: 182 NFGF 185
               
Sbjct: 173 PKAL 176


>gi|261363839|ref|ZP_05976722.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           mucosa ATCC 25996]
 gi|288568430|gb|EFC89990.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           mucosa ATCC 25996]
          Length = 479

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 8/175 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG +   DR+ E+  +     S     ++  + P  +       +L GI+++ 
Sbjct: 34  VVVDLETTGGNLYQDRVTEVALLRFDGQSVC--RYEWLVNP-CKPIPEFVAQLTGISNKM 90

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K  P F  I S+         A  +AHN++FD  F+  E +R   D    +  + T+ +
Sbjct: 91  VKTAPLFEEIASQLLPLLQG--AVVVAHNSRFDYTFLRHEFRRAGID--FAAPALCTVQL 146

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           +RR +P                I+  ++H A+ D   LSD     +   +  ++ 
Sbjct: 147 SRRLYPEFYKHNLDSIIERN-AIAVENRHRAMTDVLALSDYLEHSLREKNTEDWD 200


>gi|227111797|ref|ZP_03825453.1| ribonuclease T [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 223

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 13/198 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++E+ AV L      + + + T    + P  G    P AL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAAERCSLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI       H AL D++  + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCELVN 199

Query: 177 GGSQINFGFKTNEDRFFK 194
              ++       E+   +
Sbjct: 200 RWKRLGGWPIALEENSLE 217


>gi|167628537|ref|YP_001679036.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1]
 gi|167591277|gb|ABZ83025.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1]
          Length = 255

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 15/182 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-------TN--RTFQVFLCPNGRKNSPEA 59
            +VFD ETTGL   ND +I +G V L    +       T   R F   + P+ R     A
Sbjct: 62  FVVFDTETTGLSVPNDDVIALGGVALPPGGEGAEWTEDTGKVRVFDRLVNPH-RPIPVLA 120

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            ++ GI D+ +  +P+   +  +F DF +   A  +AH   FDVGF++  L+ +      
Sbjct: 121 REITGIDDDMVFSQPTIYPVLDDFLDFIDG--AVLVAHGIAFDVGFLDKYLRPLRTK--L 176

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +IDT++++R   P                I+ R +H AL D+ + +D++  M+V   
Sbjct: 177 YHPVIDTITLSRVLEPFRAEHSLD-ALVADYGITPRRRHSALGDAQMTADLFAAMLVRLQ 235

Query: 180 QI 181
           ++
Sbjct: 236 KL 237


>gi|170764220|ref|ZP_02638287.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens CPE str. F4969]
 gi|170715785|gb|EDT27967.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens CPE str. F4969]
          Length = 876

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 4/166 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             IVFD+E+TG+D   D II+I A++L    +    F+ FL     K S +         
Sbjct: 509 NIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLK---NKKSVKDSYYVHGFS 565

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +                +++  + HN ++D+  + +EL+R N          DTL
Sbjct: 566 DEMLQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERSNLGKPKFKTFYDTL 625

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            I RR +P + N       +      H+  H A+ D     ++ ++
Sbjct: 626 DIYRRFYPGNINYKLENLSKV-YDTKHKPSHDAMDDIIATGELLVR 670


>gi|317010079|gb|ADU80659.1| DNA polymerase III subunit epsilon [Helicobacter pylori India7]
          Length = 287

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +        L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYISDLTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      +        N+ ++AHNA FD  F+          PL
Sbjct: 132 LNAPSVHEALQKL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177


>gi|317154702|ref|YP_004122750.1| exonuclease RNase T and DNA polymerase III [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944953|gb|ADU64004.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 179

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 56/153 (36%), Gaps = 4/153 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D ET   D+K D    +G V +       R +   + P  R+ +P  +++HGI  
Sbjct: 9   RFVAIDFET--ADAKRDSACAVGLVVVDRGEIVARDY-RLIRPPRRRFNPFCVQVHGIHW 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + D+P+F  ++ +      E     +AHNA FD   + A  +     P     +    
Sbjct: 66  EDVADQPAFGELWPDLS-PLFEGADFLVAHNASFDKSVLAACCRESRCLPPVQPFLCTVQ 124

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
                    S    N  C        H +   A
Sbjct: 125 LARTTWQLPSNKLPNVCCHLGITLTHHHAASDA 157


>gi|255655351|ref|ZP_05400760.1| putative exonuclease [Clostridium difficile QCD-23m63]
          Length = 258

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 84/233 (36%), Gaps = 17/233 (7%)

Query: 7   MRKIVFDIE-TTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPN-GRK 54
           M  I+FD+E   G D K +           II+IGA++L        TF  ++ P   ++
Sbjct: 1   MEYIIFDLEFNQGFDKKFNKTISNKKCPFEIIQIGAIKLDSKFNIIDTFNSYVKPTIYKE 60

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQR 112
             P   ++  I D    D P+F  +++ F  F + Q+       A    ++       + 
Sbjct: 61  IHPFISRMTNIKDSDFNDSPTFPEVYNNFIKFISSQDPILCVWGAGDLKELYRNINYHKL 120

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +         I   +     +P+ ++                S H AL D++  + V+I
Sbjct: 121 PSNSLPKSYINIQQHASKYFNNPAGKSIGLQNAISILELDEKMSYHNALNDAYYTAKVFI 180

Query: 173 KMMVGGSQINFGFKTN--EDRFFKEEKKTVPNISLLKRDKPLFTR-ITKEELD 222
           K+       +    T+          KK V    L    + +  R +TK+E  
Sbjct: 181 KIYNPSIVPDIYLYTSIKPKTIRYSNKKRVDYDKLFDEFRKILNRELTKDEKK 233


>gi|144898742|emb|CAM75606.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 173

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 10/183 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   D+  D    +    + + +    T+   + P   + S     +HGIT
Sbjct: 1   MDFIALDFET--ADNGRDSACSLALAVVKNGT-VAETWHRLIRPP--RASQMFTHIHGIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +KD+P F   + E  D  +       AHNA FD G +    +         +  + T
Sbjct: 56  WDMVKDQPDFGHFWPEIRDLIDAAPF-LAAHNAPFDKGVLAECCRAHGHGAP-LTPFVCT 113

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           + +AR         L  +C+         + H AL D+   +++ +  +  G        
Sbjct: 114 VRVARDTWNLRPTKLPDVCRFL---AQPLNHHDALSDAVACAEIMLAALRDGYDPKRQLG 170

Query: 187 TNE 189
            ++
Sbjct: 171 PHQ 173


>gi|315585931|gb|ADU40312.1| DNA polymerase III subunit epsilon [Helicobacter pylori 35A]
          Length = 287

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVRGGGIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 132 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177


>gi|261868521|ref|YP_003256443.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413853|gb|ACX83224.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 217

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLC-PNGRKNSPEALKLHG 64
           +V D+ET GL++K D ++E+ A+ L          ++     +    G    PE+LK +G
Sbjct: 23  VVIDVETAGLNAKTDALLELAAITLKMDENGNLLPDQKCHFHIQAFEGANIDPESLKFNG 82

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                  +  +     + Q +  +AHNA FD GF+ A  QR+N  
Sbjct: 83  IDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNAAFDQGFLMAAAQRMNAK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    +  H AL D+   ++++  M+ 
Sbjct: 143 RNPFHPFSTFDTATLSGFMFGQTVLVKACQAAKIPFDSQQAHSALYDTERTAELFCYMVN 202

Query: 177 GGSQIN 182
              Q+ 
Sbjct: 203 HLKQLG 208


>gi|332291494|ref|YP_004430103.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169580|gb|AEE18835.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 1463

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 77/260 (29%), Gaps = 36/260 (13%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL    +          R I+I      +           + P+G     +
Sbjct: 2   YLIFDTETTGLPKNWNAPLTDSDNWPRAIQIAWQLHDEMGNVIEHQDYLIKPDGFDIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A ++HGI+    +      S     ++    ++   +  N  FD   + AE  R+N    
Sbjct: 62  AERIHGISTALAERDGIELSEVLSKFNIALSKSKYVVGQNVGFDTNIMGAEFHRLNIGND 121

Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                +      +                    +   ++         H A  D    + 
Sbjct: 122 LQELPVLDTCTEKTATLCQLPGGRGGKFKLPTLTELHKHLFGEGFGEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL-------LKRDKPLF--------- 213
            +++++              D F +  +     I+        LK+              
Sbjct: 182 CFLELIRQRVYTKEELDVAPDYFERFSQSNPQPITFIGLKHINLKKASAKIAQALAAQDD 241

Query: 214 -TRITKEELDEHDKTIQTLG 232
              I+K E++E+ + +  + 
Sbjct: 242 TPEISKAEIEENKEQLSDVK 261


>gi|255523029|ref|ZP_05390001.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans
           P7]
 gi|255513144|gb|EET89412.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans
           P7]
          Length = 862

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 4/166 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             IVFD+E+TG+D   D II+I A+++    +    F+ FL       S +  +      
Sbjct: 496 NIIVFDVESTGVDVTEDEIIQIAAIKVNKNGQVTEKFERFLK---NNKSVKNSEHVHGFS 552

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +    K                +++  + HN ++D+  + +ELQR            DTL
Sbjct: 553 DEFLKKNGEDKNTVLKEFVKFSEDSVIVGHNVQYDINILTSELQRAGLGEPKFKAFYDTL 612

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            I RR HP+ RN              ++  H A+ D     D+ ++
Sbjct: 613 DIYRRFHPNLRNHKLETLSHI-FETENKPSHDAMDDIQATKDILVR 657


>gi|317014965|gb|ADU82401.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           Gambia94/24]
          Length = 287

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVRGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 132 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177


>gi|307638212|gb|ADN80662.1| DNA polymerase III epsilon subunit [Helicobacter pylori 908]
 gi|325996805|gb|ADZ52210.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2018]
 gi|325998398|gb|ADZ50606.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2017]
          Length = 287

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVRGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 132 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177


>gi|296451339|ref|ZP_06893077.1| exonuclease superfamily protein [Clostridium difficile NAP08]
 gi|296880311|ref|ZP_06904276.1| exonuclease superfamily protein [Clostridium difficile NAP07]
 gi|296259755|gb|EFH06612.1| exonuclease superfamily protein [Clostridium difficile NAP08]
 gi|296428754|gb|EFH14636.1| exonuclease superfamily protein [Clostridium difficile NAP07]
          Length = 258

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 84/233 (36%), Gaps = 17/233 (7%)

Query: 7   MRKIVFDIE-TTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPN-GRK 54
           M  I+FD+E   G D K +           II+IGA++L        TF  ++ P   ++
Sbjct: 1   MEYIIFDLEFNQGFDKKFNKTISNEKCPFEIIQIGAIKLDSKFNIIDTFNSYVKPTIYKE 60

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQR 112
             P   ++  I D    D P+F  +++ F  F + Q+       A    ++       + 
Sbjct: 61  IHPFISRMTNIKDSDFNDSPTFPEVYNNFIKFISSQDPILCVWGAGDLKELYRNINYHKL 120

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +         I   +     +P+ ++                S H AL D++  + V+I
Sbjct: 121 PSNSLPKSYINIQQHASKYFNNPAGKSIGLQNAISILELDEKMSYHNALNDAYYTAKVFI 180

Query: 173 KMMVGGSQINFGFKTN--EDRFFKEEKKTVPNISLLKRDKPLFTR-ITKEELD 222
           K+       +    T+          KK V    L    + +  R +TK+E  
Sbjct: 181 KIYNPSIVPDIYLYTSIKPKTIRYSNKKRVDYDKLFDEFRKILNRELTKDEKK 233


>gi|150024446|ref|YP_001295272.1| DNA polymerase III, alpha and epsilon subunits [Flavobacterium
           psychrophilum JIP02/86]
 gi|149770987|emb|CAL42454.1| Probable DNA polymerase III, alpha and epsilon subunits
           [Flavobacterium psychrophilum JIP02/86]
          Length = 1508

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 67/230 (29%), Gaps = 19/230 (8%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL         D     R I+I      +           + P G     +
Sbjct: 2   YLIFDTETTGLPRSWSAPITDTNNWPRCIQIAWQLHDEMGNLIEHQDYLIKPEGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A ++HGI+ E   ++        E ++    +    +  N  FDV  +  E  R N    
Sbjct: 62  AERIHGISTELAIEQGVSLQEVLEQFNIALSKTKFIVGQNVGFDVNIMGCEFYRANISSD 121

Query: 119 DPSRIIDTLSIARRKHP---------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                +                      +    +   +Y   I     H A  D    + 
Sbjct: 122 MVKMPVLDTCTEVTASLLKLPGGRGGRFKLPTLTELHQYLFQIPFSEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +++++                F + ++K    I L+          + E
Sbjct: 182 CFLELIKREVFTKEELDVEAHYFHEFQRKNQGEIQLIGLKHINLKEASAE 231


>gi|157370439|ref|YP_001478428.1| ribonuclease T [Serratia proteamaculans 568]
 gi|157322203|gb|ABV41300.1| ribonuclease T [Serratia proteamaculans 568]
          Length = 226

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIET G ++K D ++EI AV L      + + + T    + P  G    PEAL  +G
Sbjct: 31  VVIDIETAGFNAKTDALLEIAAVTLKMDEDGWLQQDETLHFHVEPFEGANLQPEALAFNG 90

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +         A  +AHNA FD  F+ A  +R +  
Sbjct: 91  IDPSNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFLMAAAERASLK 150

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C    I       H AL D+   + ++ +++ 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACIAADIPFDSAQAHSALYDTEQTAQLFCELVN 210

Query: 177 GGSQIN 182
              ++ 
Sbjct: 211 RWKRLG 216


>gi|261880650|ref|ZP_06007077.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332603|gb|EFA43389.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 907

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 60/181 (33%), Gaps = 11/181 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD ETTGL+  +D +I+I A  + +    ++ F V +   GR+       +       
Sbjct: 528 VVFDTETTGLNVFDDDVIQIAAERIRNGKTVDK-FSVHIE-TGREIPKMLGDIPNPIIGE 585

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---------LQRINKDPLDP 120
            + +                 +   I HNA++D   ++            Q+ +   LD 
Sbjct: 586 REHQTIRPHEEGLQMFLDFVGSDVLIGHNAEYDYRIMDYNLRRYLPHVDWQKEHPVCLDS 645

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +II  L    +             +     ++    +  +      +    +++    +
Sbjct: 646 LKIIRLLRPELKAFKLKLLLQELHLEGTNSHLADDDVNATVSLLRYCNTRAQELLNSQKE 705

Query: 181 I 181
            
Sbjct: 706 F 706


>gi|218548753|ref|YP_002382544.1| ribonuclease T [Escherichia fergusonii ATCC 35469]
 gi|218356294|emb|CAQ88912.1| ribonuclease T (RNase T) [Escherichia fergusonii ATCC 35469]
 gi|324113426|gb|EGC07401.1| ribonuclease T [Escherichia fergusonii B253]
 gi|325497162|gb|EGC95021.1| ribonuclease T [Escherichia fergusonii ECD227]
          Length = 215

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDNTLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I     +           +   +  +         A  +AHNA FD GF+ A   R +  
Sbjct: 80  IDPNDPQRGAVREYDALHAIFKMVRKGIKDTGCNRAIMVAHNATFDHGFLMAAANRASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACTAAGMAFDSTQAHSALYDTEQTAMLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|171056716|ref|YP_001789065.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170774161|gb|ACB32300.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
          Length = 210

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 6/170 (3%)

Query: 7   MRKI-VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M  I V D ETTG+   +  R  EIGAV +       + +Q  +  +G    P   +L G
Sbjct: 1   METIAVIDFETTGMTPSQGARATEIGAVLVRGGEIVGQ-YQSLMY-SGVHIPPFIEQLTG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I++  L+D P    +  E       +    +AHNA FD GF  AE +R   +P       
Sbjct: 59  ISNAMLRDAPPAEQVMREVAA--FTRGCPMVAHNAAFDRGFWLAERERAGCEPDLAQEFA 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            T+ ++RR +  + N        +    ++   H AL D+   + + +++
Sbjct: 117 CTVLLSRRLNTEAPNHKLGTLASWFGLPNNGRAHRALADALTTAHLLVRL 166


>gi|261840222|gb|ACX99987.1| DNA polymerase III subunit epsilon [Helicobacter pylori 52]
          Length = 323

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 111 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYITELTGIAYEDT 167

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 168 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 213


>gi|239636871|ref|ZP_04677870.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           warneri L37603]
 gi|239597545|gb|EEQ80043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           warneri L37603]
          Length = 902

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 59/176 (33%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   +        T+   +        P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDYDDIIQIGITFVRQNKIIG-TYHSMIR-TDLDIPPFIQALTSIEET 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  + +    E    ++AHN  FD+ FI    +  N        +     
Sbjct: 64  MLEKAPYFKEIAHDIYQQLQE--CVFVAHNVAFDLNFIKKAFKNCNIKYRPKRVLDTLEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       L+ L + +   I   + H A  D+   + + IK      Q+   
Sbjct: 122 FKIAFPTDKSYQLSELAEAH--DIPLNNAHRADEDATTTAQLMIKAFEKFEQLPLD 175


>gi|149926803|ref|ZP_01915062.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
 gi|149824355|gb|EDM83573.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
          Length = 308

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 55/187 (29%), Gaps = 13/187 (6%)

Query: 1   MIRKNKMR------------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           ++R+ +MR             +V D ETTGLD     +IE+GAV +     T     V  
Sbjct: 26  VLRRIQMRSSFGGQINSPVKVLVVDTETTGLDYATCEVIEVGAVLIEVDQDTGAIGAVLG 85

Query: 49  CPNGRKNSP-EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
              G +         +        +                 + A ++AHNA FD  F+ 
Sbjct: 86  TFGGLEEPKVAITPENSAIHGITNEMVKGQRFDEAALKALCSEAALFVAHNAAFDKPFML 145

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                + K     +      +            L+     +G   +    +  +      
Sbjct: 146 RRFPWLEKSIWACTFRELPWTQENYSGRKLEYLLSDCGYFHGAHRAVEDCNALVHVLAQP 205

Query: 168 SDVYIKM 174
                +M
Sbjct: 206 MKTSQRM 212


>gi|126665981|ref|ZP_01736961.1| ribonuclease T [Marinobacter sp. ELB17]
 gi|126629303|gb|EAZ99920.1| ribonuclease T [Marinobacter sp. ELB17]
          Length = 214

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 64/186 (34%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +   D ++EI AV +    +       T+   + P  G      +L   G
Sbjct: 21  VVVDVETAGFNPAKDALLEIAAVMVTMDENGFLHRGETYLQQIDPFEGANFEQSSLDFTG 80

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I     + +            S   +    F+ + A  + HNA FD  F+ A  +R +  
Sbjct: 81  IDPWDPEREAVPEREGLSEIFSPIRKAMKAFDCKRAVLVGHNATFDHNFVFAASERADIK 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L   CK   I    +  H A  D+   +D++  ++ 
Sbjct: 141 RNPFHPFSTFDTATLAGLAYGHTVLAQACKLARIPFDSKEAHSAAYDAEKTADLFCSIVN 200

Query: 177 GGSQIN 182
              ++ 
Sbjct: 201 RWQELG 206


>gi|294629410|ref|ZP_06707970.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
 gi|292832743|gb|EFF91092.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
          Length = 653

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 9/172 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+ET+GL ++ DRI+ I  +    D ++T   +   + P      P  + +HG+T E L
Sbjct: 22  VDVETSGLIARRDRILSIAVLTFGPDGTQTGE-YSTLVNPG---CDPGPVHIHGLTAERL 77

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D P+F  +         +     +AHNA+FD  F+  E  R         R+       
Sbjct: 78  RDAPAFEQVAGRIGALLQD--RVMVAHNAQFDYDFLAHEFARARLCLPVNQRLCTLALNR 135

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           R + P++   L SL   YG+  +    H AL D+ +L+ ++   +   ++++
Sbjct: 136 RVEPPAADLSLASLAAHYGVPQTRA--HDALDDTRVLAGIFRSSLSEAARLD 185


>gi|208435412|ref|YP_002267078.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27]
 gi|208433341|gb|ACI28212.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27]
          Length = 264

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 52  FIDLETTGSCPIKHEILEIGAVQVRGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 108

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 109 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 154


>gi|118580761|ref|YP_902011.1| DNA-directed DNA polymerase [Pelobacter propionicus DSM 2379]
 gi|118503471|gb|ABK99953.1| DNA-directed DNA polymerase [Pelobacter propionicus DSM 2379]
          Length = 170

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 5/165 (3%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ET+GL  +   R+IE+ AV L +        +  L  N   +   A ++HGI  E 
Sbjct: 7   VVDVETSGLSPRGGGRVIEVAAVLLREGKVVGE-LESLLRVNCSIHPAAA-RVHGIGWEM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+  P    ++  F  F        +AHNA FD+GFI  EL  +     + S     ++ 
Sbjct: 65  LRHAPEPEDVWRRFLSFV--GRRPLVAHNAPFDMGFIRHELALLGLPLANRSICTLRMAR 122

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            R    +S           G        H AL D+ L + V++ M
Sbjct: 123 RRFPELASHRLEALARHLLGSIPEDCRLHRALGDARLAARVWLAM 167


>gi|157151695|ref|YP_001450717.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157076489|gb|ABV11172.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 824

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 5/111 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +++  M+  + D+E TG  S   +II++G V L D  +   T+Q  + P+         +
Sbjct: 1   MKRKNMKYAIVDLEATGTGS-TAKIIQVGIVILEDG-EIKETYQTDINPHEALE-EHIKQ 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           L G++D+ L   P FS +  E ++   +  A ++AHN KFD   +   L  
Sbjct: 58  LTGLSDQRLSQAPDFSQVAREIYELIED--AVFVAHNVKFDANLLAESLFW 106


>gi|255306302|ref|ZP_05350473.1| putative exonuclease [Clostridium difficile ATCC 43255]
          Length = 258

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 82/236 (34%), Gaps = 23/236 (9%)

Query: 7   MRKIVFDIETTGLDSKND--------------RIIEIGAVELLDYSKTNRTFQVFLCPN- 51
           M  I+FD+E    +   D               II+IGA++L        TF  ++ P  
Sbjct: 1   MEYIIFDLE---FNQGFDKKLNKTVSNEKCPFEIIQIGAIKLDSKFNIIDTFNSYIKPTI 57

Query: 52  GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAE 109
            ++  P   ++  I +    D P+F  +++ F  F + Q+       A    ++      
Sbjct: 58  YKEIHPFISRMTNIKNSDFNDSPTFPEVYNNFIKFISSQDPILCVWGAGDLKELYRNINY 117

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            +  +         I   +     +P+ ++                S H AL D++  + 
Sbjct: 118 HKLPSNSLPKSYINIQQHASKYFNNPAGKSIGLQNAISILELDEKMSYHNALNDAYYTAK 177

Query: 170 VYIKMMVGGSQINFGFKTN--EDRFFKEEKKTVPNISLLKRDKPLFTR-ITKEELD 222
           V+IK+       +    T+          KK V    L    + +  R +TK+E  
Sbjct: 178 VFIKIYNPSIVPDIYLYTSIKPKTIRYSNKKRVDYDKLFDEFRKILNRELTKDEKK 233


>gi|302519143|ref|ZP_07271485.1| DNA polymerase III [Streptomyces sp. SPB78]
 gi|302428038|gb|EFK99853.1| DNA polymerase III [Streptomyces sp. SPB78]
          Length = 664

 Score = 56.5 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 9/165 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+ET+GL ++ DR++ +  V +  D  +T   F   + P      P  + +HG+T E L
Sbjct: 75  VDVETSGLMARRDRVLSVAVVTMGPDGEQTGE-FSTLVDPG---CDPGPVDVHGLTRERL 130

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P+F  I         +     +AHNA+FD  F+  E  R         R+       
Sbjct: 131 SGAPAFGQIAGRLGAMLQD--RVLVAHNAQFDYDFLAHEFARARLYLPVTRRLCTLALNR 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +   P+    L SL   YG+  +    H AL D+ +L+ ++++  
Sbjct: 189 QVDPPTRDMKLGSLAAHYGVPRTRA--HDALDDTRVLAGIFLRAT 231


>gi|94499178|ref|ZP_01305716.1| ribonuclease T [Oceanobacter sp. RED65]
 gi|94428810|gb|EAT13782.1| ribonuclease T [Oceanobacter sp. RED65]
          Length = 222

 Score = 56.5 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 69/203 (33%), Gaps = 13/203 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S+ D ++EI  V +                 + P  G      AL   G
Sbjct: 19  VVVDVETAGFNSQTDALLEIAMVIMDMDEQGNMLPGPAMSAHIKPFEGANLEQSALDFTG 78

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I       +                +       + A  + HNA FD+GF+NA ++R N  
Sbjct: 79  IDPFDPDRRAEDEGPALKDMFKTIRKAMKVKGCKRAILVGHNAHFDLGFLNAAIERNNIK 138

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L   CK  GI   + S H AL D+   ++++  ++ 
Sbjct: 139 RSPFHPFSGFDTATLSGLALGHTVLARSCKLAGIDFDNHSAHSALYDTQKTAELFALIVN 198

Query: 177 GGSQINFGFKTNEDRFFKEEKKT 199
              Q+       E    + EK  
Sbjct: 199 KWKQLGGWDWAYEQHVKENEKDE 221


>gi|229552292|ref|ZP_04441017.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           rhamnosus LMS2-1]
 gi|258539701|ref|YP_003174200.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
           rhamnosus Lc 705]
 gi|229314364|gb|EEN80337.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           rhamnosus LMS2-1]
 gi|257151377|emb|CAR90349.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus
           rhamnosus Lc 705]
          Length = 933

 Score = 56.5 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 8/209 (3%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K  DR+I+ G   +       +T    + P+ R       +L GI+ 
Sbjct: 7   FAVVDLETTGTSVKDGDRMIQFGCALVRHGKII-QTISQMINPD-RSVPQTIQRLTGISP 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L   P F  +         +    ++AHN  FD  F+NAE +RI    L    I    
Sbjct: 65  ERLVAAPYFDEVAPALHQVLTK--TVFVAHNVNFDYPFLNAEFERIGLPKLQLEAIDTVE 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-MVGGSQINFGFK 186
                    S   L+ L       I H + H A  D+   + + +++     +      +
Sbjct: 123 LAQVLLPEISSFRLSDL--TTHFAIQHDNPHQADSDATSTAKLLLQLKARFQALPTPTQQ 180

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
               R     ++T   + ++        +
Sbjct: 181 ALIQRHDGFIRETGDYLKMIASPPRPLKK 209


>gi|199598401|ref|ZP_03211820.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001]
 gi|258508490|ref|YP_003171241.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
           rhamnosus GG]
 gi|199590720|gb|EDY98807.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001]
 gi|257148417|emb|CAR87390.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus
           rhamnosus GG]
 gi|259649800|dbj|BAI41962.1| DNA helicase [Lactobacillus rhamnosus GG]
          Length = 933

 Score = 56.5 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 8/209 (3%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K  DR+I+ G   +       +T    + P+ R       +L GI+ 
Sbjct: 7   FAVVDLETTGTSVKDGDRMIQFGCALVRHGKII-QTISQMINPD-RSVPQTIQRLTGISP 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L   P F  +         +    ++AHN  FD  F+NAE +RI    L    I    
Sbjct: 65  ERLVAAPYFDEVAPALHQVLTK--TVFVAHNVNFDYPFLNAEFERIGLPKLQLEAIDTVE 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-MVGGSQINFGFK 186
                    S   L+ L       I H + H A  D+   + + +++     +      +
Sbjct: 123 LAQVLLPEISSFRLSDL--TTHFAIQHDNPHQADSDATSTAKLLLQLKARFQALPTPTQQ 180

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
               R     ++T   + ++        +
Sbjct: 181 ALIQRHDGFIRETGDYLKMIASPPRPLKK 209


>gi|315268227|gb|ADT95080.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS678]
          Length = 201

 Score = 56.5 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 57/171 (33%), Gaps = 11/171 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGL+     ++EI  +E         T    + P       EA  +HGIT+E 
Sbjct: 33  VILDTETTGLEW-GCEVVEISIIEARTGLILMNTLVRPINP----IPAEATAIHGITNEM 87

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P F  I        + +            +   +A         ++       L+ 
Sbjct: 88  VADAPLFFDIAISVAQILSGRTVIAYNSAFDKKMLCSSAAYSSGEPPYVNSDFQCAMLAY 147

Query: 130 ARRKHPSSR------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           A+ K   +               +        + H AL D  L  ++ +KM
Sbjct: 148 AQYKGDWNHGHGDFKWHSLVNAAKQQGIALEGTAHRALYDCQLTRELILKM 198


>gi|58337449|ref|YP_194034.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM]
 gi|58254766|gb|AAV43003.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM]
          Length = 927

 Score = 56.5 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 79/209 (37%), Gaps = 7/209 (3%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   +    II+ G   + +     +T+   + P+ R+     + L GI++
Sbjct: 10  FAVVDLETTGTQRENGHHIIQFGCAIIKNMKVV-KTYSFLINPH-REIPQSVVNLTGISN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIID 125
           E ++ +  F     +      +    ++AHN  FD+ F+N EL +   D L       ++
Sbjct: 68  EDVQKQKDFDYYAPKIVSILQD--TVFVAHNVDFDLPFLNYELTQHGYDALTNKAIDTVE 125

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
              IA    PS +    +   +      H++   A   + LL ++  K+           
Sbjct: 126 LAKIAFPTLPSYKLGDLTSQLKIKHLNPHKADSDAYGTAVLLIEIIKKLTNLPQATLNTL 185

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFT 214
            +      ++    +  I+   R +    
Sbjct: 186 SSLSHGLIRDTSWIITTIADDLRKEKRPL 214


>gi|170724006|ref|YP_001751694.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida
          W619]
 gi|169762009|gb|ACA75325.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
          W619]
          Length = 236

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCP 50
          R +V D+ET+GL+   D+++ IGAV + D +   ++ F+     P
Sbjct: 40 RWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFSQQFERTLHRP 84


>gi|46402125|ref|YP_006619.1| Gp39 [Klebsiella phage phiKO2]
 gi|40218269|gb|AAR83055.1| Gp39 [Klebsiella phage phiKO2]
          Length = 202

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 1   MIRKNKMR--KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M+  N +R   ++ D ETTGL    D IIEI  + +             + P  R   PE
Sbjct: 11  MMMANWLRSDHVIIDTETTGL-MDFDEIIEITIINMRGEIL----LNSLVKP-SRPIPPE 64

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A K++ IT+E + D P++S +F        +   +W+A N+ FD   +     +      
Sbjct: 65  ATKINHITNEMVADAPTWSDVFPAVLKIIWK--YKWLAWNSSFDARLMVQSCLKTWFFDD 122

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSL 144
                I ++ +A          +   
Sbjct: 123 LKPHRITSIIMAIETRHIDAKAVYDQ 148


>gi|326794723|ref|YP_004312543.1| ribonuclease T [Marinomonas mediterranea MMB-1]
 gi|326545487|gb|ADZ90707.1| Ribonuclease T [Marinomonas mediterranea MMB-1]
          Length = 224

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 76/208 (36%), Gaps = 13/208 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + K D ++EI A  L          + T +  + P  G      AL   G
Sbjct: 16  VVIDVETAGFNEKTDALLEIAASILRMDENGDLYIHETLEYIVQPFEGANLEKAALDFTG 75

Query: 65  ITDEFLKDKPSFSSIFSEFW--------DFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I            S                   + A  + HN+ FD GF+NA ++R +  
Sbjct: 76  IDPFDPDRNDMPESEALTQMLSKVRKELKSVGCKRAILVGHNSSFDHGFLNAAIERCSIK 135

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + +       +  L   C+   I  S+   H A  D+   ++++ +++ 
Sbjct: 136 RNPFHPFSSFDTASLAGLAYGQTVLAKACEAANIPFSNSQAHSAKYDTEKTAELFCEIVN 195

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNIS 204
              Q+    + +E +   E  +++ N +
Sbjct: 196 RWKQMGGWSQFSESQESAETMESLFNSN 223


>gi|227904085|ref|ZP_04021890.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
 gi|227868104|gb|EEJ75525.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
          Length = 927

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 79/209 (37%), Gaps = 7/209 (3%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   +    II+ G   + +     +T+   + P+ R+     + L GI++
Sbjct: 10  FAVVDLETTGTQRENGHHIIQFGCAIIKNMKVV-KTYSFLINPH-REIPQSVVNLTGISN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIID 125
           E ++ +  F     +      +    ++AHN  FD+ F+N EL +   D L       ++
Sbjct: 68  EDVQKQKDFDYYAPKIVSILQD--TVFVAHNVDFDLPFLNYELTQHGYDALTNKAIDTVE 125

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
              IA    PS +    +   +      H++   A   + LL ++  K+           
Sbjct: 126 LAKIAFPTLPSYKLGDLTSQLKIKHLNPHKADSDAYGTAVLLIEIIKKLTNLPQATLNTL 185

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFT 214
            +      ++    +  I+   R +    
Sbjct: 186 SSLSHGLIRDTSWIITTIADDLRKEKRPL 214


>gi|303240841|ref|ZP_07327353.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
           cellulolyticus CD2]
 gi|302591569|gb|EFL61305.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
           cellulolyticus CD2]
          Length = 182

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 8/101 (7%)

Query: 7   MRKIVFDIETTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEAL 60
           M  I+FD+E T    +ND      IIEIGAV+L D  +   TF  F+ P      S   +
Sbjct: 1   MNYIIFDLEAT--CWENDKSKTSEIIEIGAVKLNDRLEVVDTFSKFIKPAIYPVLSDFCI 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
           +L  I  + +     F ++  EF ++    + E    +  F
Sbjct: 59  RLTSIEQKDVDTADIFKNVMVEFENWITSSDTEVALCSWGF 99


>gi|163937886|ref|YP_001642772.1| exonuclease RNase T and DNA polymerase III [Bacillus
           weihenstephanensis KBAB4]
 gi|163865741|gb|ABY46797.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           weihenstephanensis KBAB4]
          Length = 271

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 65/201 (32%), Gaps = 13/201 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEF 69
           VFD+ETTGLD KN++++EI A+      +  R   + +    G+K     +    + D  
Sbjct: 16  VFDLETTGLDYKNEQVVEIAAIRTDLEQELGRM-HILVKLNEGKKLPDFLVDNTDLRDYM 74

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L +             F           N+     +   +   + K  + P   + T SI
Sbjct: 75  LVNGMVEHQALINLMAFMG---------NSIVVAHYAPFDFAYLFKALIAPELFLCTRSI 125

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
            R   P     L    +R G+       H A+ D      V    +    +        +
Sbjct: 126 ERLLTPDKSASLAPTAERRGVK--LEGAHRAMNDIEATIGVLKSQLSEIKERGIKRSVVQ 183

Query: 190 DRFFKEEKKTVPNISLLKRDK 210
           +      ++         + K
Sbjct: 184 NMIVDSPERPNKFTPRHAKVK 204


>gi|314936410|ref|ZP_07843757.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655029|gb|EFS18774.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 905

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 2/163 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG   ++D II+IG   + D   +  T+   +     +  P    L  I + 
Sbjct: 6   FAVVDLETTGNQLEHDEIIQIGITFVRDNKISG-TYHSMIR-TDLEIPPFIQALTSIEET 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  + ++   +        +   +      E   I+  P      ++   
Sbjct: 64  MLEQAPYFHEIADDIYEQLKDCIFVAHNVDFDLNFIKKAFEKSNIHFKPKKVLDTLELFK 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           IA     S +    +      +T +HR+   A   ++L+   +
Sbjct: 124 IAFPTEKSYQLSELANAHNIPLTNAHRADEDATTTAYLMIKAF 166


>gi|326789827|ref|YP_004307648.1| exonuclease RNase T and DNA polymerase III [Clostridium lentocellum
           DSM 5427]
 gi|326540591|gb|ADZ82450.1| Exonuclease RNase T and DNA polymerase III [Clostridium lentocellum
           DSM 5427]
          Length = 305

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 64/178 (35%), Gaps = 9/178 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +V D ET   +S       +G V++ + +    +F   + P           L GIT
Sbjct: 1   MNYVVIDFET--ANSSRSSACSLGMVKVHEGNIV-DSFYSLINPED-DFDLFNTSLTGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + + P+F+ ++ +   F ++        +       +   +      P+       T
Sbjct: 57  QDMVCNSPTFNELWPDILSFISDHMIVA---HYASFDLSVLRNVLLKYNIPIPTLSYCCT 113

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            +++++  P+  N        Y       + H A  D+H  + +   + +  +  +F 
Sbjct: 114 RNLSKKTFPNLINYRLDTVASY--LDIEFNHHHAFEDAHATAVLLNHIFIQNTTSSFE 169


>gi|171743164|ref|ZP_02918971.1| hypothetical protein BIFDEN_02291 [Bifidobacterium dentium ATCC
           27678]
 gi|283455845|ref|YP_003360409.1| DNA polymerase III, subunit epsilon [Bifidobacterium dentium Bd1]
 gi|171278778|gb|EDT46439.1| hypothetical protein BIFDEN_02291 [Bifidobacterium dentium ATCC
           27678]
 gi|283102479|gb|ADB09585.1| DNA polymerase III, epsilon subunit [Bifidobacterium dentium Bd1]
          Length = 212

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 8/178 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGIT 66
            ++ D ETTGL   +   IIEIGA+ +   ++  R  F+  + P  R       +L GI+
Sbjct: 25  YVMLDTETTGLHPEEGATIIEIGALLVTPGNENARPRFEQLVDPQ-RPLPEFISRLTGIS 83

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPS 121
           D  L+DKP+  +    F  + ++          IAHNA+FD+GF++A  +  + D  +  
Sbjct: 84  DGMLRDKPTADAAMLRFHQWLDDVWPTGKPLTIIAHNAEFDIGFLDAAERAHDPDANEFD 143

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                      +    +             I    +H AL D+     +Y  +    S
Sbjct: 144 CRWLCTKEMSWELNPRKRHHRVSDLIVDYRIGDVEEHRALSDAIQEQMIYRALCREAS 201


>gi|27468061|ref|NP_764698.1| dinG protein [Staphylococcus epidermidis ATCC 12228]
 gi|57866955|ref|YP_188602.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus epidermidis RP62A]
 gi|251810883|ref|ZP_04825356.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876111|ref|ZP_06284978.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus epidermidis SK135]
 gi|293366576|ref|ZP_06613253.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|81819394|sp|Q5HP88|DING_STAEQ RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81842831|sp|Q8CP71|DING_STAES RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|27315606|gb|AAO04740.1|AE016747_237 dinG protein [Staphylococcus epidermidis ATCC 12228]
 gi|57637613|gb|AAW54401.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus epidermidis RP62A]
 gi|251805563|gb|EES58220.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295136|gb|EFA87663.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus epidermidis SK135]
 gi|291319345|gb|EFE59714.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329725381|gb|EGG61864.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU144]
 gi|329735254|gb|EGG71546.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU045]
 gi|329737465|gb|EGG73719.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU028]
          Length = 902

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 6/178 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   +        T+   +     +  P    L  I +E
Sbjct: 6   FAVVDLETTGNQLDYDEIIQIGITFVRQNQVI-DTYHSMIR-TDLEIPPFIQALTSIEEE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ +  + +    +    ++AHN  FD+ FI    ++ N        +     
Sbjct: 64  MLVQAPYFNEVADDIYQLIKD--CVFVAHNISFDLNFIKKAFEKCNIQFKPKRVMDTLEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                       L++L + + I     + H A  D+   + + IK      Q++   +
Sbjct: 122 FKIAFPTDKSYQLSALAESHHIP--LNNAHRADEDATTTAKLMIKAFEKFEQLHLDTQ 177


>gi|81428950|ref|YP_395950.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78610592|emb|CAI55643.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 178

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 7/167 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + + D    I  V + +    ++ F   + P     S    ++HGI 
Sbjct: 1   MNFVAMDFET--ANGQRDSACSIALVVVRNDQIVDQ-FYTLIKPET-YFSSRNSQIHGIY 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ +   P F          F       +AHNA FD+G + + LQ  +        +   
Sbjct: 57  EDDVAQAPKF-DQVWPHIAPFFTPQKLVVAHNATFDIGVLRSTLQHYDIPEPHYLALDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +  R       + LN+LC    + I   + H AL DS   + + IK
Sbjct: 116 TTSRRLYPQFKNHKLNTLC--TNLEIPLENHHNALADSIACAKILIK 160


>gi|333030485|ref|ZP_08458546.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
 gi|332741082|gb|EGJ71564.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
          Length = 164

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 5/150 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +  D ET   ++    I  +G V + +    +R F   + P     +    ++HG+TD
Sbjct: 3   NFVAIDFET--ANANRSSICSVGIVIVKNGEVVDR-FYQLIRPIPNFYTYWNTRVHGLTD 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                 P F  ++S             +AHN+ FD   +    +       +        
Sbjct: 60  YDTAMAPRFPEVWSSIAPKLQG--LPLVAHNSAFDESCLKKAFEAYQLIYPNYIFYCTLK 117

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK 157
           +  +       + L ++    G ++ +   
Sbjct: 118 ASRKSLPRLINHQLGTVASCCGYSLQNHHN 147


>gi|317011686|gb|ADU85433.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           SouthAfrica7]
          Length = 287

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +        L GI  E  
Sbjct: 75  FIDLETTGSCPIKHEILEIGAVQVSGGKIINR-FETLVK--VKSVPDYISDLTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 132 LNAPSVYEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177


>gi|281424647|ref|ZP_06255560.1| putative ATP-dependent DNA helicase [Prevotella oris F0302]
 gi|281401235|gb|EFB32066.1| putative ATP-dependent DNA helicase [Prevotella oris F0302]
          Length = 906

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
           +FD ETTGLD  +D I++I AV++ + +  
Sbjct: 509 IFDTETTGLDVFHDDILQIAAVKVRNGAVV 538


>gi|295135069|ref|YP_003585745.1| exonuclease family protein [Zunongwangia profunda SM-A87]
 gi|294983084|gb|ADF53549.1| exonuclease family protein [Zunongwangia profunda SM-A87]
          Length = 457

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 88/236 (37%), Gaps = 12/236 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +       ++ F   + P  R   P  + L GI +E
Sbjct: 2   YAILDIETTGGKYNEEGITEIAIYKFDGEKVVDQ-FISLINPE-RPIQPFVVGLTGINNE 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P F  +     +     +   +AHNAKFD   +  E +R+  +     + + T+ 
Sbjct: 60  MLRNAPKFYEVAKRIVE--ITTDCIIVAHNAKFDYRILRTEFKRLGFE--FQRKSLCTVE 115

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           ++++  P   +          + I    +H A  D+     ++  ++   ++ +      
Sbjct: 116 LSKKLIPDMPSYSL-GKLVRALGIPLSDRHRANGDAQATVKLFKMLLAKDTKKDILKDNV 174

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
                ++    +  I            +  E+ +     I  +GK+    + I+ +
Sbjct: 175 RQEPKRQLDSKLVYILDDLPAITGIYYLHDEDGE-----IIYIGKSKNIKKRINQH 225


>gi|294140554|ref|YP_003556532.1| ribonuclease T [Shewanella violacea DSS12]
 gi|293327023|dbj|BAJ01754.1| ribonuclease T [Shewanella violacea DSS12]
          Length = 223

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 72/204 (35%), Gaps = 13/204 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIG--AVELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S+ D ++EI    +++ D      ++T    + P  G    P+AL  +G
Sbjct: 20  VVIDVETAGFNSQTDALLEIAVTMLKMDDEGILSLDKTLHYHIEPFEGANLEPDALAFNG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +         +  +AHNA FD GF++  ++R    
Sbjct: 80  IDPTNPLRGAVSEKEAFLEIFKEVKKAQKAVGCHRSIIVAHNAAFDHGFVSKAIERCALK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A          L   C   GI   +   H AL D+   ++++  ++ 
Sbjct: 140 RTPFHPFATFDTAALSGLALGHTVLAKACSIAGIDFDNNEAHSALYDTERTAELFCHIVN 199

Query: 177 GGSQINFGFKTNEDRFFKEEKKTV 200
               +            +  ++T 
Sbjct: 200 KWKALGGWPLAVNHDIDEASEETK 223


>gi|228476066|ref|ZP_04060774.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           hominis SK119]
 gi|228269889|gb|EEK11369.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           hominis SK119]
          Length = 905

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 2/163 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG   ++D II+IG   + D   +  T+   +     +  P    L  I + 
Sbjct: 6   FAVVDLETTGNQLEHDEIIQIGITFVRDNKISG-TYHSMIR-TDLEIPPFIQALTSIEET 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  + ++   +        +   +      E   I+  P      ++   
Sbjct: 64  MLEQAPYFHEIADDIYEQLKDCIFVAHNVDFDLNFIKKAFEKSNIHFKPKKVLDTLELFK 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           IA     S +    +      +T +HR+   A   ++L+   +
Sbjct: 124 IAFPTEKSYQLSELANAHNIPLTNAHRADEDATTTAYLMIKAF 166


>gi|261339587|ref|ZP_05967445.1| ribonuclease T [Enterobacter cancerogenus ATCC 35316]
 gi|288318408|gb|EFC57346.1| ribonuclease T [Enterobacter cancerogenus ATCC 35316]
          Length = 216

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L        T + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLTPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +              +   +  +     +   A  +AHNA FD  F  A  +R +  
Sbjct: 80  IDPKNPLRGAVSEYDALHAIFKMVRKGMKDNDCSRAIMVAHNATFDHSFTMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   GI       H AL D+   ++++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACITAGIEFDGTQAHSALYDTERTAELFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|157374989|ref|YP_001473589.1| ribonuclease T [Shewanella sediminis HAW-EB3]
 gi|157317363|gb|ABV36461.1| ribonuclease T [Shewanella sediminis HAW-EB3]
          Length = 223

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 68/204 (33%), Gaps = 13/204 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIG--AVELLDYSKTN--RTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI    +++ D       +T    + P  G    PEAL   G
Sbjct: 20  VVIDVETAGFNAQTDALLEIAVTMLKMDDEGVLGLDKTLHYHIEPFEGANLEPEALAFTG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +         +  +AHNA FD GF++  ++R    
Sbjct: 80  IDPTNPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVSKAVERNGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L   C   GI   +   H AL D+   ++++  ++ 
Sbjct: 140 RTPFHPFATFDTATLAGLAIGHTVLAKACSIAGIPFDNNEAHSALYDTERTAELFCLIVN 199

Query: 177 GGSQINFGFKTNEDRFFKEEKKTV 200
               +        D    E +   
Sbjct: 200 RWKALGGWPLATPDESTLETESEA 223


>gi|292669904|ref|ZP_06603330.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648701|gb|EFF66673.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 219

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 73/219 (33%), Gaps = 17/219 (7%)

Query: 7   MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M+ IV D+E   +  +        N  IIEIGAV L +  +    FQ ++CP        
Sbjct: 1   MKHIVVDLEMNPVSKEYREVRRKLNGEIIEIGAVRLNENYEQEDEFQCYVCPEYGMVKKH 60

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA---KFDVGFINAELQRINK 115
             +L GIT E ++  P+FS  F  F  +      +  + +    K        +L   + 
Sbjct: 61  ITELTGITQEKVEGHPAFSDSFHSFVAWIGAAETKIYSWSMSDIKQLRKECRLKLPDFDV 120

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + LD   +        R    +   L       G        H AL D+   S V   M 
Sbjct: 121 NWLDTRWVDLQQEFDDRLGLHNSLALKHALGAMGRRFEGSQ-HSALADAVNTSAVLALMQ 179

Query: 176 VGGS-----QINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
                    +         +          P++  LK++
Sbjct: 180 DDAKFRETMRPVLEILAPSEGLSNSIGDLFPDLEKLKKN 218


>gi|183598873|ref|ZP_02960366.1| hypothetical protein PROSTU_02308 [Providencia stuartii ATCC 25827]
 gi|188021081|gb|EDU59121.1| hypothetical protein PROSTU_02308 [Providencia stuartii ATCC 25827]
          Length = 213

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 72/194 (37%), Gaps = 13/194 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L    D   + + T    + P  G    P AL   G
Sbjct: 20  VVIDVETGGFNAKTDGLLEIAAITLKMDKDGWLSPDETLHFHVEPFEGANLEPAALAFTG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +     +   A  +AHNA FD  F+    +R    
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKMVRKGMKATDCNRAIIVAHNATFDHSFVMNAAERAGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI    +  HGAL D++  + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVFGQTILAKACVAAGIPFDGKQAHGALYDTNRTALLFCELVN 199

Query: 177 GGSQINFGFKTNED 190
              ++       ++
Sbjct: 200 KWKKLGGWPPAEQE 213


>gi|113970710|ref|YP_734503.1| ribonuclease T [Shewanella sp. MR-4]
 gi|114047939|ref|YP_738489.1| ribonuclease T [Shewanella sp. MR-7]
 gi|122944589|sp|Q0HTX3|RNT_SHESR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|123029558|sp|Q0HHM1|RNT_SHESM RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|113885394|gb|ABI39446.1| RNAse T [Shewanella sp. MR-4]
 gi|113889381|gb|ABI43432.1| RNAse T [Shewanella sp. MR-7]
          Length = 222

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 70/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S+ D ++EI    +++ D      ++T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNSQTDALLEIAVTLLKMDDEGLLGIDKTLHFNIEPFEGANLEPEALAFNG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +     +   +  +AHNA FD GF++  ++R +  
Sbjct: 80  IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L   C   GI   ++  H AL D+   ++++  ++ 
Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCYIVN 199

Query: 177 GGSQIN 182
               + 
Sbjct: 200 RWKHLG 205


>gi|188533941|ref|YP_001907738.1| ribonuclease T [Erwinia tasmaniensis Et1/99]
 gi|188028983|emb|CAO96849.1| Ribonuclease T [Erwinia tasmaniensis Et1/99]
          Length = 218

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D+K + ++EI AV  ++ +      + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFDAKTNALLEIAAVTLKMDNDGWLVKDETLHFHVEPFPGSILLPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +         A  +AHNA FD+ F+NA  +R +  
Sbjct: 80  IDPANPLRGAVSEYESLHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L   C   G+T      H AL D+   +D++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLVLGQTVLAKACHAAGMTFDSSQAHSALYDTLQTADLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|149371985|ref|ZP_01891304.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49]
 gi|149355125|gb|EDM43686.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49]
          Length = 1476

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 69/237 (29%), Gaps = 22/237 (9%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL    +          R I+I      +           + P G     +
Sbjct: 2   YLIFDTETTGLPRNWNAPLSDSDNWPRCIQIAWQLHDEMGNVIEHQDYLVQPEGFNIPFD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI---------NAE 109
           A K+HGI+ E    K          +     +    +  N  FD+  +            
Sbjct: 62  AEKIHGISTELAAAKGISLEDMMAKFQEVLGKTKFLVGQNVGFDLNIMGAEFLRLGLENP 121

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           L  +               IA  ++   +    +   ++         H A  D    + 
Sbjct: 122 LPDMPLLDTCTEATAQLCQIAGGRYGKFKLPTLTELHQFLFNSPFGEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE---ELDE 223
            + +++              D F    K+    I ++        + +++   EL++
Sbjct: 182 CFFELIRRQVFKAEELGVESDYFENFSKENPAPIEVIGLKHINLKKASEKIRRELEK 238


>gi|330952959|gb|EGH53219.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae Cit 7]
          Length = 203

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 77/207 (37%), Gaps = 7/207 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRT--REQSFACS 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +ARR  P + N       RY         H A+ D+ + +++   +     Q +    
Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTAYLTNELRQTHGISA 176

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLF 213
            +       +K     I+   + +   
Sbjct: 177 ISHQMLCSLQKVPAAKINETLKRQRGV 203


>gi|319400807|gb|EFV89026.1| putative dnaQ family exonuclease/DinG family helicase
           [Staphylococcus epidermidis FRI909]
          Length = 902

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 6/178 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   +        T+   +     +  P    L  I +E
Sbjct: 6   FAVVDLETTGNQLDYDEIIQIGITFVRQNQVI-DTYHSMIR-TDLEIPPFIQALTSIEEE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ +  + +    +    ++AHN  FD+ FI    ++ N        +     
Sbjct: 64  MLVQAPYFNEVADDIYQLIKD--CVFVAHNISFDLNFIKKAFEKCNIQFKPKRVMDTLEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                       L++L + + I     + H A  D+   + + IK      Q++   +
Sbjct: 122 FKIAFPTDKSYQLSALAESHHIP--LNNAHRADEDATTTAKLMIKAFEKFEQLHLDTQ 177


>gi|86157195|ref|YP_463980.1| exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773706|gb|ABC80543.1| Exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 207

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 67/179 (37%), Gaps = 14/179 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALKLHGITD 67
             D+ET GLD + D I+ +G V +     +   +F   + P        P +++ H +  
Sbjct: 21  ALDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFSTLIRPEAAAAAIDPGSIRAHQLVP 80

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS------ 121
             +   PS  S+ ++       +    + H A  DV F+    +R  +   +P       
Sbjct: 81  HDVATAPSLDSVLADV--DLRAREGALLVHQASLDVAFLKRAYRRCGRRWPEPPVVDTVA 138

Query: 122 ---RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              +            PS   DLN L  R    +    +H AL D+   +++++ +   
Sbjct: 139 LLIKAAKRQRFVNPDAPSMEPDLNLLAARRQRGLPDYGQHDALTDAVATAELFLVLRRQ 197


>gi|328480154|gb|EGF49106.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 106

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K  DR+I+ G   +       +T    + P+ R       +L GI+ 
Sbjct: 7   FAVVDLETTGTSVKDGDRMIQFGCALVRHGKII-QTISQMINPD-RSVPQTIQRLTGISP 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
           E L   P F  +         +        N  +
Sbjct: 65  ERLVAAPYFDEVAPALHQVLTKTVFVAHNVNFDY 98


>gi|326801307|ref|YP_004319126.1| DNA polymerase III subunit alpha [Sphingobacterium sp. 21]
 gi|326552071|gb|ADZ80456.1| DNA polymerase III, alpha subunit [Sphingobacterium sp. 21]
          Length = 1493

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 70/230 (30%), Gaps = 19/230 (8%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R ++I      D  +        + P+G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPITDTDNWPRCVQIAWQLHDDMGRLIEHQDYLVKPDGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A ++HGI+ E   ++        E ++   ++    +  N  FD+  +  E  R+     
Sbjct: 62  AERVHGISTELALEQGIDLVEVLEKFNIALDKAKFIVGQNIGFDINIMGCEFHRMGIATT 121

Query: 119 DPSRIIDTLSIARRKHP---------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              + +         +            +    +    Y   +     H A  D    + 
Sbjct: 122 MGEKAVLDTCTEVTANLLQLPGGRGGKFKLPNLTELHAYLFGVPFAEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +++++          +  ED F          I+ +          +  
Sbjct: 182 CFLELIKKNIFTAAELQVQEDYFEVFRTNNPDPIAAVGLQHVNLKAASDA 231


>gi|308185320|ref|YP_003929453.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180]
 gi|308061240|gb|ADO03136.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180]
          Length = 287

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 75  FVDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 132 LNAPSTHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177


>gi|256424475|ref|YP_003125128.1| DNA polymerase III subunit epsilon [Chitinophaga pinensis DSM 2588]
 gi|256039383|gb|ACU62927.1| DNA polymerase III, epsilon subunit [Chitinophaga pinensis DSM
           2588]
          Length = 456

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG  +  + I EI A+ + D     + ++  + P G         L GITDE
Sbjct: 2   YAIVDIETTGGHASANGITEI-AIYIYDGRNIVQQYETLINP-GVPIPRYIQSLTGITDE 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
            + + P+F  +  + +   ++    ++AHN  FD  FI   
Sbjct: 60  MVANAPAFDEVAGDIFALLHD--KIFVAHNVNFDYSFIQYH 98


>gi|41406411|ref|NP_959247.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|254773395|ref|ZP_05214911.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|41394760|gb|AAS02630.1| DnaQ [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 329

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 76/207 (36%), Gaps = 11/207 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    K  ++    L P      P    +HG+T   L
Sbjct: 19  VIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPG---VDPGPTHVHGLTAAML 75

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D+P F+ I  +  +         +AHN  FD  F+ AE +    +    + +       
Sbjct: 76  EDQPQFADIAGDVVEVLRG--RTLVAHNVAFDYAFLAAEAELAGIELPVDTVMCTVELAR 133

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R         L +L   +G+T      H A  D+ +L+ V    +    + +     +  
Sbjct: 134 RLDLGIDNLRLETLAAHWGVTQQRP--HDAFDDAMVLTGVLASALQRARERDIWLPVHPV 191

Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRIT 217
              +     V +  L    +PL    +
Sbjct: 192 TRRRWPNGRVTHDEL----RPLKVLAS 214


>gi|299142339|ref|ZP_07035471.1| ATP-dependent DNA helicase [Prevotella oris C735]
 gi|298576061|gb|EFI47935.1| ATP-dependent DNA helicase [Prevotella oris C735]
          Length = 906

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
           +FD ETTGLD  +D I++I AV++ + +  
Sbjct: 509 IFDTETTGLDVFHDDILQIAAVKVRNGAVV 538


>gi|217033856|ref|ZP_03439281.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10]
 gi|216943754|gb|EEC23197.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10]
          Length = 287

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 132 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177


>gi|312868001|ref|ZP_07728205.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parasanguinis F0405]
 gi|311096405|gb|EFQ54645.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parasanguinis F0405]
          Length = 1464

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GIT+E
Sbjct: 426 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVI-EEFDEFIDP-GHPLSAFTTQLTGITNE 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++       +  EF  F        +AHNA FDVGF+NA  +R     +    I     
Sbjct: 484 HVRGAKPLVQVLKEFQAFCEG--TVLVAHNATFDVGFMNANYERHGLPKITQPVIDTLEF 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 542 ARNLYPDFKRHGLGPLTKRFGVGLEH--HHMANYDAEATGRLL 582


>gi|295135414|ref|YP_003586090.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
 gi|294983429|gb|ADF53894.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
          Length = 282

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 80/214 (37%), Gaps = 24/214 (11%)

Query: 1   MIRKNKMRKIVFDIETT-GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MI       +VFD ET  G +        +G VE  +  K  R F   + P     +P A
Sbjct: 1   MIED----FVVFDFETARGKNP-----CSLGMVEYKNGKK-YREFYELINPEVAYFNPFA 50

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPL 118
           +++HGIT E ++ + +FS ++     F        +AHNAKFD   +     +     P 
Sbjct: 51  IQIHGITYEDVQHERNFSELWDAMLPFIEG--KTLVAHNAKFDNAVLLYSLQRYGIDVPP 108

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---- 174
             S      +      PS +    +        +     H AL D+ +  ++++K+    
Sbjct: 109 YASFCTLQRARRLVALPSYKLSSLA----NFFEVPQLRHHNALEDAFVCGELFLKLNRVE 164

Query: 175 --MVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
             +    +    F ++   +  E++     I   
Sbjct: 165 EELKLQEEHGMDFPSDYLDWIAEKQGQNVQIRRK 198


>gi|283470668|emb|CAQ49879.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 897

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +      T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNHII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D   +    ++AHN  FD+ FI    +  N        I     
Sbjct: 64  MLQQAPYFNQVAEEIYDKIKD--CIFVAHNVDFDLNFIKKAFKNCNIQYRPKKVIDTLEI 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       L+ L + +GIT    + H A  D+   + + I       ++   
Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175


>gi|242242736|ref|ZP_04797181.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis W23144]
 gi|242233872|gb|EES36184.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis W23144]
          Length = 902

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 6/178 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   +        T+   +     +  P    L  I +E
Sbjct: 6   FAVVDLETTGNQLDYDEIIQIGITFVRQNQVI-DTYHSMIR-TDLEIPPFIQALTSIEEE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ +  + +    +    ++AHN  FD+ FI    ++ N        +     
Sbjct: 64  MLVQAPYFNEVADDIYQLIKD--CVFVAHNISFDLNFIKKAFEKCNIQFKPKRVMDTLEL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                       L++L + + I     + H A  D+   + + IK      Q++   +
Sbjct: 122 FKIAFPTDKSYQLSALAESHHIP--LNNAHRADEDATTTAKLMIKAFEKFEQLHLDTQ 177


>gi|15612503|ref|NP_224156.1| DNA polymerase III subunit epsilon [Helicobacter pylori J99]
 gi|4156060|gb|AAD07016.1| DNA POLYMERASE III [Helicobacter pylori J99]
          Length = 323

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 111 FVDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 168 LNAPSAHEALQEL--RIFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 213


>gi|86141808|ref|ZP_01060332.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis
           MED217]
 gi|85831371|gb|EAQ49827.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis
           MED217]
          Length = 1460

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 72/259 (27%), Gaps = 35/259 (13%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL         D     R I+I      D           + P+G     +
Sbjct: 2   YLIFDTETTGLPKNWSAPITDSDNWPRAIQIAWQLHDDMGNCIEHEDYLIRPDGFDIPFD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP- 117
           A ++HGI+ E  +            +    E+    +  N  FDV  + AE  R++    
Sbjct: 62  AERIHGISTELAQRDGLPLGEVLGKFKAALERTKFVVGQNVGFDVNIMGAEFHRLDVTNQ 121

Query: 118 --------LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                              I   +    +    +   +Y         H A  D    + 
Sbjct: 122 LQELPVLDTCTETTAQLCQIPGGRGGKFKLPTLTELHQYLFNQPFAEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI------------- 216
            + +++                F    +     I  +        +              
Sbjct: 182 CFFELVRRRIFTQEELDVPAGYFENFSEANPQPIEFIGLKHINLKKASDEIRKELQKADQ 241

Query: 217 ---TKEELDEHDKTIQTLG 232
              +KEE+ E+ + +  + 
Sbjct: 242 ADISKEEIKENKEQLAKVD 260


>gi|117924351|ref|YP_864968.1| exonuclease, RNase T and DNA polymerase III [Magnetococcus sp.
           MC-1]
 gi|117608107|gb|ABK43562.1| Exonuclease, RNase T and DNA polymerase III [Magnetococcus sp.
           MC-1]
          Length = 230

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 48/169 (28%), Gaps = 3/169 (1%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGIT 66
           + +  D+ETTGLD     I+ +G V + +            + P G  +   A+      
Sbjct: 43  KFLALDLETTGLDPNKSEILSVGFVPVYNGRVVLSGCAHYLVQPEGAISHASAVVHGITD 102

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D         S +                    + +      +        +     +  
Sbjct: 103 DHAEAYGEPLSVVLPRVLKALKGHVLLAHHCPIELNFIRKACQRLYGEMPLIPAVDTLVI 162

Query: 127 --LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               + RR        L     R    +   + H AL+D+    ++++ 
Sbjct: 163 ERQIMDRRSGTYEPGALRLFTARTRYNLPRYAAHDALMDAIACGELFLA 211


>gi|217032955|ref|ZP_03438429.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128]
 gi|216945324|gb|EEC23998.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128]
          Length = 287

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 75  FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 132 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177


>gi|167581005|ref|ZP_02373879.1| possible DNA polymerase/helicase [Burkholderia thailandensis TXDOH]
          Length = 379

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EIG V +     +  T+   + P  +   P   +L GITD  +
Sbjct: 17  FVDLETTGGSAVEHRITEIGVVVVNANHVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  P+F+ I     +  +     ++AHNA FD GF
Sbjct: 74  RGAPTFADIAPALLERLDG--KLFVAHNASFDRGF 106


>gi|83720800|ref|YP_442134.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
 gi|167619083|ref|ZP_02387714.1| possible DNA polymerase/helicase [Burkholderia thailandensis Bt4]
 gi|257138320|ref|ZP_05586582.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
 gi|83654625|gb|ABC38688.1| possible DNA polymerase/helicase [Burkholderia thailandensis E264]
          Length = 379

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EIG V +     +  T+   + P  +   P   +L GITD  +
Sbjct: 17  FVDLETTGGSAVEHRITEIGVVVVNANHVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  P+F+ I     +  +     ++AHNA FD GF
Sbjct: 74  RGAPTFADIAPALLERLDG--KLFVAHNASFDRGF 106


>gi|33861178|ref|NP_892739.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33639910|emb|CAE19080.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 270

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 69/215 (32%), Gaps = 6/215 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             ++ D ETTGLD   D IIE+G +     +K+  +   FL P     S    +      
Sbjct: 48  NILILDTETTGLDENKDEIIEVGCILFNVNTKSVLSQVSFLFP----VSSNEAEHVNGIS 103

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + +          F+    + +   +AHN +FD  +         +     S      
Sbjct: 104 AEVTNIKQPWEDGLNFFLKLVDCSDLIVAHNVEFDKKWFGKGRLPKLEKKWICSLEDINW 163

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL--SDVYIKMMVGGSQINFGF 185
           S  +           +L     +   HR+       S +    +   +++   ++  F +
Sbjct: 164 SFQKNLKNRPSVTDLALSFSIPVWSLHRALSDCFYISEVFKKCENLEELLCKATEPRFLY 223

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           K       +   K    +    +      ++T EE
Sbjct: 224 KALVSYEERSLAKKAGFLWNNPKQGAWAKKLTVEE 258


>gi|269104806|ref|ZP_06157502.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161446|gb|EEZ39943.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 249

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +  D+ETTGLDS+ D+II +G V   LD     ++    + P+   N    +   
Sbjct: 59  FVALDLETTGLDSQQDQIISVGLVPFTLDRIYCRQSAHWVVNPHRLLNEESVVIHG 114


>gi|327183531|gb|AEA31978.1| hypothetical protein LAB52_05120 [Lactobacillus amylovorus GRL
           1118]
          Length = 298

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 64/175 (36%), Gaps = 6/175 (3%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MI+       I  D+ETTGL++   +II IGA++  +       F   +  N        
Sbjct: 121 MIKGAIKNDFIAVDLETTGLNTSRSKIISIGAIK-ENLKGEEEQFYRLIKINEAIPEKIT 179

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
                 +    +   +     +EF  F   +      +N  FD  F+      I +  L 
Sbjct: 180 ELTGLTSKVLNERGVTLEQALNEFRKFVGSEMIV--GYNLSFDNNFLLKAYLSIGQRALV 237

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            S       +  +       DL ++ K YGI   + ++H AL D+     +  ++
Sbjct: 238 NSMKDLMGIVKEKDIFLDNYDLETVLKEYGIK--NDNRHNALSDARATFKLAKEL 290


>gi|323464450|gb|ADX76603.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus pseudintermedius ED99]
          Length = 900

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 4/109 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG  +  D II+IG   + +       +   +             L  I +E
Sbjct: 7   YAVVDLETTGNQADYDEIIQIGITFVRNNQII-DHYHSMIK-TDLTIPTFIQALTSIEEE 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            L   P F  +  + +    +    ++AHN  FD+ F+    ++ +   
Sbjct: 65  MLNQAPYFKEVAHKIYSKIKD--CIFVAHNVNFDLNFLKRSFKKCHIHY 111


>gi|294636395|ref|ZP_06714781.1| ribonuclease T [Edwardsiella tarda ATCC 23685]
 gi|291090340|gb|EFE22901.1| ribonuclease T [Edwardsiella tarda ATCC 23685]
          Length = 221

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D+  + ++EI AV L      + +T++     + P  G   SPEAL  +G
Sbjct: 20  VVIDVETAGFDANRNALLEIAAVTLRMNDAGWLETDQCLHFHIEPFEGAILSPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +         A  +AHNA FD  F+ A  +R    
Sbjct: 80  IDPHNPLRGAVSEYEALHAIFKVVRKGIKDQECNRAVIVAHNAHFDHSFLMAAAERAKLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C    I       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACISAEIPFDSSQAHSALYDTQQTALLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|94676709|ref|YP_588563.1| ribonuclease T [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|166228561|sp|Q1LU01|RNT_BAUCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|94219859|gb|ABF14018.1| ribonuclease T [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 218

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 13/198 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI A+ L      + KT++T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNSGTDALLEIAAITLQMDHHGWLKTHKTLHFNIEPFPGSILQPEALIFNG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 +I  +     +   A  +AHNA FD  F+ A   R    
Sbjct: 80  IDPDNPLRYAVTEREALYELFTIVHQGIKDDDCHRAILVAHNAAFDHSFLMAAANRTKIK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI  +    H AL D+   ++++ +++ 
Sbjct: 140 HNPFHPFATFDTAALSGLVLGQTVLLKACLTAGIPFNTSEAHSALYDAERTAELFCELVN 199

Query: 177 GGSQINFGFKTNEDRFFK 194
              ++    K        
Sbjct: 200 RWKRLGGWTKVTTSSIHS 217


>gi|149408370|ref|YP_001294473.1| hypothetical protein ORF056 [Pseudomonas phage F8]
 gi|219523927|ref|YP_002455988.1| hypothetical protein PB1_gp58 [Pseudomonas phage PB1]
 gi|190333523|gb|ACE73778.1| conserved hypothetical protein [Pseudomonas phage PB1]
          Length = 184

 Score = 56.1 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 64/175 (36%), Gaps = 10/175 (5%)

Query: 7   MRKIVFDIETTGLDS-------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MR  V+D ETTGL         K  RIIE   V     +  +     F+C  G       
Sbjct: 1   MRFAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGETILDEV--EFICNPGIVIEEII 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+ G+ +E L   PSF     +  DF   +    IAHN  FD   +  +L R      +
Sbjct: 59  TKITGLKNEDLIKHPSFLDQRQKVRDF-FSKADANIAHNLPFDKFMLTCDLARGKLGLEE 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +     +       P   + +            +  KH AL D  LL +V  +M
Sbjct: 118 VNFPSLDICTVEESAPLFGHRMRLQHLYEHYCGPYVQKHRALDDVRLLHEVCKRM 172


>gi|322390849|ref|ZP_08064359.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
 gi|321142519|gb|EFX37987.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
          Length = 1464

 Score = 56.1 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GIT+E
Sbjct: 426 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVI-EEFDEFIDP-GHPLSAFTTQLTGITNE 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++       +  EF  F        +AHNA FDVGF+NA  +R     +    I     
Sbjct: 484 HVRGAKPLVQVLKEFQAFCEG--TVLVAHNATFDVGFMNANYERHGLPKITQPVIDTLEF 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 542 ARNLYPDFKRHGLGPLTKRFGVGLEH--HHMANYDAEATGRLL 582


>gi|295424856|ref|ZP_06817571.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664]
 gi|295065422|gb|EFG56315.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664]
          Length = 934

 Score = 56.1 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 63/207 (30%), Gaps = 3/207 (1%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   + N+ II+ G   + +     +T+   + P+ R+       L  I +
Sbjct: 10  FAVVDLETTGTQRENNNHIIQFGCAIIKNMKVV-KTYSFMINPH-REIPLSVQNLTRIHN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++  P FS    +      +        N                         ++  
Sbjct: 68  EDVEKAPDFSHYAKKIIAILEDTVFVAHNVNFDLPFLNYELMQHGYPALTNKAIDTVELA 127

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            IA    PS +    +          H++   A   + LL D+  ++            +
Sbjct: 128 KIAFPTLPSYKLSDLTSRLAIKHLNPHKADSDAYGTAILLIDIIHRLEKLPQATLNTLGS 187

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFT 214
                 ++    +  I+   R +    
Sbjct: 188 LSSGLVRDTSWVLNKIADYYRKQKRPL 214


>gi|239906614|ref|YP_002953355.1| DNA polymerase III epsilon subunit [Desulfovibrio magneticus
          RS-1]
 gi|239796480|dbj|BAH75469.1| DNA polymerase III epsilon subunit [Desulfovibrio magneticus
          RS-1]
          Length = 242

 Score = 56.1 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNG 52
           +V D E TG D K D I+ + AV L   S     TF     P  
Sbjct: 46 FVVLDTELTGFDPKRDAIVSVAAVRLRGLSIMAGETFAALTRPQR 90


>gi|254447860|ref|ZP_05061325.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
           HTCC5015]
 gi|198262640|gb|EDY86920.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
           HTCC5015]
          Length = 238

 Score = 56.1 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
             DIETTGL+++ D+I+ IG VE               + P    +S   +     
Sbjct: 52  AIDIETTGLNAERDKIVSIGLVEFDASRVYLASAKHWLVNPGELSDSSVIVHGITH 107


>gi|254519350|ref|ZP_05131406.1| helicase [Clostridium sp. 7_2_43FAA]
 gi|226913099|gb|EEH98300.1| helicase [Clostridium sp. 7_2_43FAA]
          Length = 872

 Score = 56.1 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
             IVFD+E+TG D   D II+I A+++  Y +   +F+ FL 
Sbjct: 496 NIIVFDVESTGTDVTEDEIIQIAAIKINKYGEVIDSFEKFLK 537


>gi|296877258|ref|ZP_06901298.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
 gi|296431778|gb|EFH17585.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
          Length = 1464

 Score = 56.1 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 6/163 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GIT+E
Sbjct: 426 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVI-EEFDEFIDP-GHPLSAFTTQLTGITNE 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++       +  EF  F        +AHNA FDVGF+NA  +R     +    I     
Sbjct: 484 HVRGAKPLVQVLKEFQAFCEG--TVLVAHNATFDVGFMNANYERHGLPKITQPVIDTLEF 541

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 542 ARNLYPDFKRHGLGPLTKRFGVGLEH--HHMANYDAEATGRLL 582


>gi|262274550|ref|ZP_06052361.1| ribonuclease T [Grimontia hollisae CIP 101886]
 gi|262221113|gb|EEY72427.1| ribonuclease T [Grimontia hollisae CIP 101886]
          Length = 223

 Score = 56.1 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 73/187 (39%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++EI AV L    D   + ++T    + P  G     EAL  +G
Sbjct: 20  VVIDVETAGFNPQTDALLEICAVTLKMDEDGWLSPDKTIHFHVTPFEGANLEQEALAFNG 79

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                  +  +       Q A  +AHNA FD  F+ A  +R N 
Sbjct: 80  IKDPFSPLRGAVDEEHALKEIFKLIRKEQKASGCQRAIMVAHNANFDHSFVMAASERANL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                       + A       +  L   CK  GI   +   H AL D+   ++++ +++
Sbjct: 140 KRNPFHPFATFDTAALSGLALGQTVLAKACKTAGIAFDNNEAHSALYDTERTAELFCEIV 199

Query: 176 VGGSQIN 182
               ++ 
Sbjct: 200 NRWKKLG 206


>gi|319892447|ref|YP_004149322.1| DinG family ATP-dependent helicase YoaA [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162143|gb|ADV05686.1| DinG family ATP-dependent helicase YoaA [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 900

 Score = 56.1 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 4/109 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG  +  D II+IG   + +       +   +             L  I +E
Sbjct: 7   YAVVDLETTGNQADYDEIIQIGITFVRNNQII-DHYHSMIK-TDLTIPTFIQALTSIEEE 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            L   P F  +  + +    +    ++AHN  FD+ F+    ++ +   
Sbjct: 65  MLNQAPYFKEVAHKIYSKIKD--CIFVAHNVNFDLNFLKRSFKKCHIHY 111


>gi|149197350|ref|ZP_01874401.1| DNA polymerase III [Lentisphaera araneosa HTCC2155]
 gi|149139368|gb|EDM27770.1| DNA polymerase III [Lentisphaera araneosa HTCC2155]
          Length = 210

 Score = 56.1 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D E TGL  K D+++ I AV++     ++  +F   +    +K   E + +H +  
Sbjct: 30  YVVIDCEMTGLKPKQDKLLSIAAVKISQGRIQSQESFYRVIFQEKQKLRDETILIHRLNH 89

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +       ++  EF DF   QN   + H    D+ F+N     +    L P      L
Sbjct: 90  EQISTGSDQIAVLKEFSDFC--QNCIPVGHFFDIDLSFLNP---VMPLPFLYPHLDTRLL 144

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
               +  PSS      LC  Y +       H AL D+   + +++K++    +
Sbjct: 145 VKTLQPCPSSIQLNE-LCDFYNLP--SFEAHNALGDATSTACLFLKILSELRK 194


>gi|312599149|gb|ADQ91172.1| hypothetical protein BpV2_005c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 432

 Score = 56.1 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 15/221 (6%)

Query: 7   MRKIVFDIETTGLD-------------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53
           M  I +D ETTGL                  R++ +  V+     +   ++   + P+  
Sbjct: 1   MNYISWDTETTGLPMGYTKSTPDNVHLFDRCRMLTLAFVKYSSKGRELSSYHGLVYPDTF 60

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQR 112
               E+  +HGIT E    K          +       +  +AHN+ FD         +R
Sbjct: 61  NVPQESTNVHGITHEHALHKGQPFGYVYAAFKEAVSNTSILVAHNSSFDENCFFSECYRR 120

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                              R      ++   L             H AL DS     +Y 
Sbjct: 121 GFDTEPFKHVHFVDTLKMARSVLPGLHNHKLLTVYKYYFGHEFDAHDALNDSRACGKIYF 180

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
            ++             +      +  ++  ++  K+ K + 
Sbjct: 181 -LLRDNEFKMKDVGIEKVTLKASDIASIIGMNPYKKPKEVL 220


>gi|332674336|gb|AEE71153.1| DNA-directed DNA polymerase III epsilon subunit [Helicobacter
           pylori 83]
          Length = 287

 Score = 56.1 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 132 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177


>gi|317182753|dbj|BAJ60537.1| DNA polymerase III subunit epsilon [Helicobacter pylori F57]
          Length = 287

 Score = 56.1 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 132 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177


>gi|317181232|dbj|BAJ59018.1| DNA polymerase III subunit epsilon [Helicobacter pylori F32]
          Length = 287

 Score = 56.1 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 132 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177


>gi|317179729|dbj|BAJ57517.1| DNA polymerase III subunit epsilon [Helicobacter pylori F30]
          Length = 287

 Score = 56.1 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 132 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177


>gi|317178251|dbj|BAJ56040.1| DNA polymerase III subunit epsilon [Helicobacter pylori F16]
          Length = 287

 Score = 56.1 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 132 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177


>gi|308062811|gb|ADO04699.1| DNA polymerase III subunit epsilon [Helicobacter pylori Cuz20]
          Length = 287

 Score = 56.1 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 132 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177


>gi|319399859|gb|EFV88106.1| exonuclease family protein [Staphylococcus epidermidis FRI909]
          Length = 184

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 9/188 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V+++D   T  +F   + P     +   + +HGI  E
Sbjct: 6   FVALDFET--ANGKRTSICSVGMVKVIDNQIT-ESFHTLVNPFD-YFTETNINVHGIHPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P F  ++     F        +AHNA FD+  ++  L+ +N D    +       
Sbjct: 62  DVQDAPGFKHVYPYMLQFI--DQLPVVAHNAAFDMNVLHQSLKSLNIDTPSLTYFCSYQL 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             R  +                 +     H AL D+   + +  +++     +       
Sbjct: 120 AKRTINAYRYGL---KHLMNHYHLDFHGHHDALNDAKACAMITYRLLKHYDDLQSMLNIY 176

Query: 189 EDRFFKEE 196
           E     + 
Sbjct: 177 EKNLKDKG 184


>gi|254490869|ref|ZP_05104052.1| exonuclease superfamily [Methylophaga thiooxidans DMS010]
 gi|224464041|gb|EEF80307.1| exonuclease superfamily [Methylophaga thiooxydans DMS010]
          Length = 240

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 17/178 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            +  D ETTGLD + + I+  G V   L     ++  +QV + PN    S E++  H IT
Sbjct: 50  FVALDFETTGLDPRYNEIVSFGLVPFTLRGIRPSDGHYQV-VKPNCV-LSEESIAFHRIT 107

Query: 67  DEFLKDKPSFSS-----------IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
              +   P                         E+    +A    +    +   +  +  
Sbjct: 108 HSQVDTAPPLEKVLDELLGRLSGCIVVVHYQQIERPFLDLACRKLWGEHCLFPLIDTMAI 167

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +                        L+   +RYG+       H A +D+   +++++ 
Sbjct: 168 EARWQRSGWKHRLKKTLGLQPVSIRLDDSRRRYGLPSYSA--HHAKVDAMATAELFLA 223


>gi|71414299|ref|XP_809256.1| exonuclease [Trypanosoma cruzi strain CL Brener]
 gi|70873611|gb|EAN87405.1| exonuclease, putative [Trypanosoma cruzi]
          Length = 316

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 7/51 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-------NRTFQVFLCP 50
           M  I  D+ETTG  ++ D I+ IGAVEL     T        R+F   + P
Sbjct: 94  MSAICVDLETTGFSAQRDDIVSIGAVELRWDGTTLQQWVLGARSFFRTVRP 144


>gi|313496718|gb|ADR58084.1| DNA polymerase III, epsilon subunit [Pseudomonas putida BIRD-1]
          Length = 236

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-----NRTFQV 46
          R +V D+ET+GL+   D+++ IGAV + D +        RT   
Sbjct: 40 RWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHR 83


>gi|167031397|ref|YP_001666628.1| DNA polymerase IIIsubunit epsilon [Pseudomonas putida GB-1]
 gi|166857885|gb|ABY96292.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1]
          Length = 236

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-----NRTFQV 46
          R +V D+ET+GL+   D+++ IGAV + D +        RT   
Sbjct: 40 RWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHR 83


>gi|26987095|ref|NP_742520.1| DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440]
 gi|24981722|gb|AAN65984.1|AE016227_5 exonuclease [Pseudomonas putida KT2440]
          Length = 236

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-----NRTFQV 46
          R +V D+ET+GL+   D+++ IGAV + D +        RT   
Sbjct: 40 RWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHR 83


>gi|148545634|ref|YP_001265736.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1]
 gi|148509692|gb|ABQ76552.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1]
          Length = 236

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-----NRTFQV 46
          R +V D+ET+GL+   D+++ IGAV + D +        RT   
Sbjct: 40 RWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHR 83


>gi|82548268|gb|ABB82959.1| putative DNA polymerase type III, exonuclease domain [uncultured
           organism HF70_19B12]
          Length = 270

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 81/204 (39%), Gaps = 10/204 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV--FLCPNGRKNSPEALKLHGITDEF 69
           FD ETTGL+ + DRI++      +       +      + P G K    ++ +HGI++E 
Sbjct: 12  FDTETTGLNPRKDRILQYA---FIGRDVDGSSVCQVELIDP-GIKIPEASMNVHGISNED 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  + SF    ++  +  +         NA FD  FI  E  R+ +    P  ++DTL +
Sbjct: 68  VTGRGSFGMHSNDIAELIDGAIIVGHNINA-FDWRFIEFEFMRVGEAVPSPYALVDTLEL 126

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           AR      R+ L  LCKRYG       +  +       + + +  M+ G+Q         
Sbjct: 127 ARGLRIPGRHTLGHLCKRYG---IGLDRAHSADADAAATLILLWKMIEGNQSILEDGLEG 183

Query: 190 DRFFKEEKKTVPNISLLKRDKPLF 213
            +      +   +I      + L 
Sbjct: 184 IQDLCNRNRKSSSIRKEGLRRVLP 207


>gi|171780060|ref|ZP_02920964.1| hypothetical protein STRINF_01848 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281408|gb|EDT46843.1| hypothetical protein STRINF_01848 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 827

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 80/185 (43%), Gaps = 8/185 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++ N  +  V D+E TG  +    II++G V + +     +T+Q  + P+        +
Sbjct: 1   MMQVNSQKYAVVDLEATGAHAM-AEIIQVGIVIIENDQIV-KTYQTDVNPHEALT-EHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITDE L   P FS +  E +   ++    ++AHN KFD   +    +   +     
Sbjct: 58  HLTGITDEQLAKAPDFSKVAQEIYHLISD--CVFVAHNVKFDANLLA--EKLFLEGYELR 113

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           + ++DT+ +++  +P+             + +     H A+ D++  + + +K+      
Sbjct: 114 TPLVDTVELSQVFYPTLEKYTLGHLADV-LQLDLTDAHTAISDAYATAQLLLKLKEKMES 172

Query: 181 INFGF 185
           +    
Sbjct: 173 LPKEL 177


>gi|118463087|ref|YP_879676.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104]
 gi|118164374|gb|ABK65271.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104]
          Length = 329

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 76/207 (36%), Gaps = 11/207 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    K  ++    L P      P    +HG+T   L
Sbjct: 19  VIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPG---VDPGPTHVHGLTAAML 75

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D+P F+ I  +  +         +AHN  FD  F+ AE +    +    + +       
Sbjct: 76  EDQPQFADIAGDVVEVLRG--RTLVAHNVAFDYAFLAAEAELAGIELPVDTVMCTVELAR 133

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R         L +L   +G+T      H A  D+ +L+ V    +    + +     +  
Sbjct: 134 RLDLGIDNLRLETLAAYWGVTQQRP--HDAFDDAMVLTGVLASALQRARERDIWLPVHPV 191

Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRIT 217
              +     V +  L    +PL    +
Sbjct: 192 TRRRWPNGRVTHDEL----RPLKVLAS 214


>gi|330448832|ref|ZP_08312478.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328493023|dbj|GAA06975.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 376

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 8/165 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ETTGLD   + ++EI  V+              + P   ++  EA  +HGI+ E 
Sbjct: 2   IYLDTETTGLDPDFNEVLEIAIVDREGKIL----LNTLVKPQRNESWHEAQVIHGISPEM 57

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P+   +     D    Q+     +N +FD  F++          +      +    
Sbjct: 58  VANAPTMEDLKPTINDIVKGQHVR--IYNKEFDAAFVDLSAAEKTSCVMRDMAKFNGYWN 115

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                        +  K         + H AL D+ +   V   M
Sbjct: 116 NWHCDYRLLRLSEAASKMS--LSWDGTAHRALADTQMTRLVDNAM 158


>gi|308183650|ref|YP_003927777.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4]
 gi|308065835|gb|ADO07727.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4]
          Length = 287

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 132 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177


>gi|297380606|gb|ADI35493.1| DNA polymerase III polC-type [Helicobacter pylori v225d]
          Length = 287

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 132 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177


>gi|254780064|ref|YP_003058171.1| DNA polymerase III subunit epsilon [Helicobacter pylori B38]
 gi|254001977|emb|CAX30236.1| DNA polymerase III epsilon subunit [Helicobacter pylori B38]
          Length = 287

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 132 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177


>gi|218265111|ref|ZP_03478699.1| hypothetical protein PRABACTJOHN_04409 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221600|gb|EEC94250.1| hypothetical protein PRABACTJOHN_04409 [Parabacteroides johnsonii
           DSM 18315]
          Length = 174

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 7/170 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R    D ET   + K   I  IG   + D    +  +   + P     +     +HGIT 
Sbjct: 3   RFAAIDFET--ANGKRSSICSIGIAIIEDNKVIDSIY-TLVRPYPNFYTRFTTAVHGITM 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +   D P F  ++SE      +     +AHN+ FD G + A  +  +             
Sbjct: 60  QDTIDSPDFEEVWSEIAGKLQD--IPLVAHNSPFDEGCLRAAHEAYDLAYPKYQFYCTCR 117

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              R       + L ++    G  +++   H A+ D++  + +   MM  
Sbjct: 118 LSRRMYPFLVNHQLQTVAAHCGYDLTY--HHHAMADAYACAHIAATMMRE 165


>gi|319892935|ref|YP_004149810.1| DNA polymerase III polC-type [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162631|gb|ADV06174.1| DNA polymerase III polC-type [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464018|gb|ADX76171.1| conserved hypothetical protein [Staphylococcus pseudintermedius
           ED99]
          Length = 186

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 71/196 (36%), Gaps = 12/196 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+  +    +  D ET   + K   I  +G V+++       TF   + PN        +
Sbjct: 1   MMENS---FVALDFET--ANYKRTSICSVGMVKVVANEIV-ETFYTLVNPNDFFA-ARNI 53

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGI  + ++  P+F+ ++     F  +     +AHNA FD+  +      I  + L  
Sbjct: 54  EVHGIQAKDVQHSPNFAYVYPYMMQFIGD--LPVVAHNAAFDMSVL---HASIQAENLIT 108

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +    S    K   S              +     H AL D+   + +  +++     
Sbjct: 109 PPMTYFCSYQLAKRTVSARRHGLKHMMSHFNLDFHGHHDALNDAKACAMITYRLLKHYPS 168

Query: 181 INFGFKTNEDRFFKEE 196
           +N   +    +   ++
Sbjct: 169 LNNVLQVYGKQLTDKD 184


>gi|317013348|gb|ADU83956.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           Lithuania75]
          Length = 287

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 132 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177


>gi|221633099|ref|YP_002522324.1| DNA polymerase III subunit epsilon [Thermomicrobium roseum DSM
          5159]
 gi|221156634|gb|ACM05761.1| DNA polymerase III epsilon subunit [Thermomicrobium roseum DSM
          5159]
          Length = 228

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
          V D E TGLD + D ++ +GAV ++        +F   + P  +              + 
Sbjct: 35 VLDAEMTGLDPERDELLALGAVRMVGTRLLLGASFYQLIRPQRQGWGQSVTVHGIRPVDV 94

Query: 70 LKDKP 74
          +   P
Sbjct: 95 VGAPP 99


>gi|296166805|ref|ZP_06849223.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897821|gb|EFG77409.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 330

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 75/207 (36%), Gaps = 11/207 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      R+I +  + L D  +  ++    L P      P    +HG+T   L
Sbjct: 19  VIDVETSGFRPGQARVISLAVLGLDDDGRVEQSVVSLLNPG---VDPGPTHVHGLTAAML 75

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D+P F+ +  +            +AHN  FD  F+ AE +    +    S +       
Sbjct: 76  EDQPQFADVVDDVVK--VLDGRTLVAHNVAFDYAFLAAEAELAEAELPIDSVMCTVELAR 133

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R         L +L   +G+       H A  D+ +L+ V    +    Q +     +  
Sbjct: 134 RLDLGIDNLRLETLAAHWGVP--QERPHDAFDDAMVLTGVLASALERARQRDIWLPVHPV 191

Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRIT 217
              +     V +  L    +PL    +
Sbjct: 192 TRRRWPNGRVTHDEL----RPLKVLAS 214


>gi|308186683|ref|YP_003930814.1| ribonuclease T [Pantoea vagans C9-1]
 gi|308057193|gb|ADO09365.1| ribonuclease T [Pantoea vagans C9-1]
          Length = 222

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 72/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A+ L      + + ++T    + P  G    PEAL   G
Sbjct: 20  VVIDVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHPEALAFTG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +         A  +AHNA FD+ F++A  +R +  
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFDLNFMSAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACIAAGMEFDSTQAHSALYDTQQTATLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|304397653|ref|ZP_07379530.1| ribonuclease T [Pantoea sp. aB]
 gi|304354825|gb|EFM19195.1| ribonuclease T [Pantoea sp. aB]
          Length = 222

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 72/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A+ L      + + ++T    + P  G    PEAL   G
Sbjct: 20  VVIDVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHPEALAFTG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +         A  +AHNA FD+ F++A  +R +  
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFDLNFMSAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACIAAGMEFDSTQAHSALYDTQQTATLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|170693649|ref|ZP_02884807.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
 gi|170141431|gb|EDT09601.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
          Length = 423

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 5/102 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  +   RI E+G VE+     T   +   + P  +       +L GIT+  
Sbjct: 55  VFVDLETTGGSTSEHRITEVGVVEVGPAGVT--RWSSLVDPQ-QPIPSFIQQLTGITNAM 111

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           ++  P+F +I  E +   N     ++AHNA FD GF+  E +
Sbjct: 112 VRGAPTFDAIAPELFARLNG--KLFVAHNASFDRGFLRGEFR 151


>gi|309811312|ref|ZP_07705099.1| exonuclease [Dermacoccus sp. Ellin185]
 gi|308434619|gb|EFP58464.1| exonuclease [Dermacoccus sp. Ellin185]
          Length = 221

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 7/172 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+GLD    R+IE+   +L       R +   +   G       + +HG++D 
Sbjct: 15  FAVVDVETSGLDPLRHRVIEVAVTQLTPSGGLEREWSSLVRARGGTGP---VHIHGLSDY 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P F+ +  E  +  +      +AHNA FD  F+ AE +R  ++     R+     
Sbjct: 72  DVRDAPGFADLVDELSELLDG--RILVAHNAAFDWAFLAAEARRAGRELPVSERLCTWHL 129

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
               + P+    L +L + +  +I   + H A  D  +L +V  + +    +
Sbjct: 130 ARGLELPTDNLRLGTLAEYW--SIPVENAHRAGDDVRVLVEVLRRCLDEAGR 179


>gi|330976913|gb|EGH76936.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 203

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 7/207 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIERT--REQSFACS 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +ARR  P + N       RY         H A+ D+ + +++   +     Q +    
Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTAYLTNELRQTHGISA 176

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLF 213
            +       +K     IS   + +   
Sbjct: 177 ISHKMLCSLQKVPAAKISETLKRQRGV 203


>gi|289675841|ref|ZP_06496731.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           syringae FF5]
          Length = 204

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 7/207 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 4   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIERT--REQSFACS 117

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +ARR  P + N       RY         H A+ D+ + +++   +     Q +    
Sbjct: 118 LLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTAYLTNELRQTHGISA 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLF 213
            +       +K     IS   + +   
Sbjct: 178 ISHKMLCSLQKVPAAKISETLKRQRGV 204


>gi|298528189|ref|ZP_07015593.1| DNA polymerase III, epsilon subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511841|gb|EFI35743.1| DNA polymerase III, epsilon subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 249

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 65/175 (37%), Gaps = 12/175 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D E TGL+ K D I+ IGA+ + +      ++F    CP  R    +++ +HGIT 
Sbjct: 52  FVVLDTELTGLNVKKDEIVTIGALRISEMRIDMEQSFYFCACP-TRDVPKQSIVIHGITP 110

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              +  P          DF    N+  + HN   D+  IN EL++     L    I    
Sbjct: 111 SEAQKAPPLKEALQGLLDFC--GNSIIVGHNINLDISVINRELKKEFGGELHNPCIDTMR 168

Query: 128 SIARRKHPSSRNDLNSLCKRYGITI--------SHRSKHGALLDSHLLSDVYIKM 174
              + +            +                 ++H A  D+   + ++I +
Sbjct: 169 LARQYREGQWTGAYECYEEYSYNLRKLSREFGLPLFTEHNAFTDALQTAYLFIYL 223


>gi|73662206|ref|YP_300987.1| exonuclease [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72494721|dbj|BAE18042.1| putative exonuclease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 184

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 66/173 (38%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D ET   + K   I  +G V+++++  T  +F   + PN    S + + +H I  E
Sbjct: 6   FIALDFET--ANGKRTSICAVGMVKVVNHQIT-ESFYTLVNPND-YFSQQNIAVHSIHPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P+F +++     F  +     +AHNA FD+  ++  +     D  + +       
Sbjct: 62  QVEDAPTFQTVYPYMLQFIGD--LPVVAHNAAFDMNVLHESISAFGFDTPNMTYFCSLQL 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
             R                    +     H AL D+   + +  +++     +
Sbjct: 120 SRRTVENHRYGLN---YMMQYYNLDFHGHHDALNDAKACAMITFRLLKHYDDL 169


>gi|213964476|ref|ZP_03392676.1| DNA polymerase III epsilon subunit [Corynebacterium amycolatum
          SK46]
 gi|213952669|gb|EEB64051.1| DNA polymerase III epsilon subunit [Corynebacterium amycolatum
          SK46]
          Length = 195

 Score = 55.7 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64
           +  D+ETTGLD   D+++ IG V +         +  + + P   + S        
Sbjct: 21 WLAVDVETTGLDPSKDQLLSIGWVAVEGRDIVLEESGHLIIRPEREEVSVGESATVH 77


>gi|154246978|ref|YP_001417936.1| DNA polymerase III subunit epsilon [Xanthobacter autotrophicus Py2]
 gi|154161063|gb|ABS68279.1| Exonuclease RNase T and DNA polymerase III [Xanthobacter
           autotrophicus Py2]
          Length = 298

 Score = 55.7 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 70/241 (29%), Gaps = 33/241 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL---DYSK--TNRTFQVFLCPNGRKNSPEALKLHGI 65
           V D+ETTGLD + D IIE+         D +      +FQ    P+              
Sbjct: 46  VVDVETTGLDPQRDEIIELAMTPFSYGLDGTIFSVGDSFQGLRQPSEPILPEITAITGIT 105

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +           I       F    + +IAHNA FD  F        +  P        
Sbjct: 106 NEMVAGQ-----IIDPAVVATFAAPASLFIAHNAAFDRRFFERFSDVFSTKPW------- 153

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI------------K 173
             S+++    +       L            +H A+ D     ++              +
Sbjct: 154 ACSLSQIDWAAEGFQGAKLAYLAQAAGFFYDRHRAMHDCLATIELLAMQLPRSGVTGLSR 213

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVP----NISLLKRDKPLFTRITKEELDEHDKTIQ 229
           ++ G   +++        F  ++         N       +  +  + + + +   + + 
Sbjct: 214 LLDGARTVSWRIWAENSPFDLKDVLKARGYRWNGDPGPHPRAWYIDVPEAQREAEVRFLS 273

Query: 230 T 230
           T
Sbjct: 274 T 274


>gi|325271479|ref|ZP_08137997.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. TJI-51]
 gi|324103369|gb|EGC00698.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. TJI-51]
          Length = 236

 Score = 55.7 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          R +V D+ET+GL+   D+++ IGAV + D +  
Sbjct: 40 RWVVLDLETSGLNPNRDQVLSIGAVAIEDGAID 72


>gi|311746871|ref|ZP_07720656.1| exonuclease [Algoriphagus sp. PR1]
 gi|126578557|gb|EAZ82721.1| exonuclease [Algoriphagus sp. PR1]
          Length = 267

 Score = 55.7 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 79/199 (39%), Gaps = 9/199 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+E TG +   DRI+EI  V+L +D       +   + P G     EA  +HG+ D+ 
Sbjct: 11  FFDLEATGTNISTDRIVEISIVKLKIDGG--QEIYTRRVNP-GVPIPLEASLIHGLYDKD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LKD+PSF  I  E + F    +              I   ++   +  ++       L  
Sbjct: 68  LKDEPSFKDIAKEVYQFIGGSDLSGFN----VLKYDIPLLVEEFLRAGIEFELDKRNLLD 123

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS-QINFGFKTN 188
           A++          +   ++    +  + H A  D+    DV+I  +   + +     + N
Sbjct: 124 AQKIFHMMEKRNLTAAYKFYCGKTLENAHSAEADTLATMDVFISQVERYNGEEAIDLQGN 183

Query: 189 EDRFFKEEKKTVPNISLLK 207
           +   F+ + K + ++   K
Sbjct: 184 KLGVFENDMKKIHDLVNEK 202


>gi|242241732|ref|ZP_04796177.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144]
 gi|242234822|gb|EES37133.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144]
          Length = 184

 Score = 55.7 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 9/178 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V+++D   T  +F   + P     +   + +HGI  E
Sbjct: 6   FVALDFET--ANGKRTSICSVGMVKVIDNQIT-ESFHTLVNPFD-YFTETNINVHGIHPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P F  ++     F        +AHNA FD+  ++  L+ +N D    +       
Sbjct: 62  DVQDAPGFKHVYPYMLQFI--DQLPVVAHNAAFDMNVLHQSLKSLNIDTPSLTYFCSYQL 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
             R  +                 +     H AL D+   + +  +++     +     
Sbjct: 120 AKRTINAYRYGL---KHLMNHYHLDFHGHHDALNDAKACAMITYRLLKHYDDLQSMLS 174


>gi|71738029|ref|YP_276841.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558582|gb|AAZ37793.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320326412|gb|EFW82465.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076]
          Length = 237

 Score = 55.7 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 68/200 (34%), Gaps = 6/200 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ET+GL+   D+++ +GAV + D +    + F+   L  + + +    +     
Sbjct: 42  RWVVLDLETSGLNMNRDQVLSMGAVVIEDGAIDLGQQFERTLLRVDHKISPAVLIHGLAP 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +      +P  + +           ++  +  +A FD   ++  L+      L       
Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLSRALKESLGYRLQHPFFDA 157

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     ++              +    +H A  D+ + +++ + +     +     
Sbjct: 158 AEIAPMLCEHANLRHAGLDDWTRFFGLHAEERHHASADALVTAELALILFSHARRQQIDS 217

Query: 186 KTNEDRFFKEEKKTVPNISL 205
               +    + ++   + S 
Sbjct: 218 PLRLEEALGQWRRRRQSHSF 237


>gi|172057786|ref|YP_001814246.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Exiguobacterium sibiricum 255-15]
 gi|171990307|gb|ACB61229.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium
           sibiricum 255-15]
          Length = 937

 Score = 55.7 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 5/96 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + +V D+ETTG   K  D +IEIG   + D   T R    F+ P  +   P   +L GIT
Sbjct: 4   KFVVVDLETTGHSIKSGDEMIEIGVAVIEDGQITER-LSAFVRPQ-KPIPPFISQLTGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           DE +    SF++I        +     ++AHN +FD
Sbjct: 62  DEDVAQAESFATIAPRVLQLLDG--GVFVAHNVQFD 95


>gi|220915934|ref|YP_002491238.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953788|gb|ACL64172.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 207

 Score = 55.7 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 14/179 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALKLHGITD 67
             D+ET GLD + D I+ +G V +     +   +F   + P        P ++  H +  
Sbjct: 21  ALDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFSTLIRPEAAAAAIDPGSILAHQLVP 80

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS------ 121
             +   PS  S+ ++       +    + H A  DV F+    +R  +   +P       
Sbjct: 81  HDVATAPSLDSVLADV--DLRAREGALLVHQASLDVAFLKRAYRRCGRRWPEPPVVDTVA 138

Query: 122 ---RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              +            PS   DLN L  R    +    +H AL D+   +++++ +   
Sbjct: 139 LLIKAAKRQRFVNPDAPSMEPDLNLLAARRQRGLPDYGQHDALTDAVATAELFLVLRRQ 197


>gi|295096042|emb|CBK85132.1| RNAse T [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 219

 Score = 55.7 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 72/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLVPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +     +   A  +AHNA FD  F  A  +R +  
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKMVRKGMKENDCSRAIMVAHNATFDHSFTMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   GI       H AL D+   ++++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACITAGIAFDGTQAHSALYDTERTAELFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|167837493|ref|ZP_02464376.1| possible DNA polymerase/helicase [Burkholderia thailandensis
           MSMB43]
          Length = 379

 Score = 55.7 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EIG V +     +  T+   + P  +   P   +L GITD  +
Sbjct: 17  FVDLETTGGSAAEHRITEIGVVVVNASHVS--TWTTLVDP-RQPIPPFIQQLTGITDAMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  P+F+ I S  ++  +     ++AHNA FD GF
Sbjct: 74  RGAPTFADIASALFERLDG--KLFVAHNASFDRGF 106


>gi|309789846|ref|ZP_07684425.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides
          DG6]
 gi|308228150|gb|EFO81799.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides
          DG6]
          Length = 230

 Score = 55.7 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 8  RKI---VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN 51
          R++   V DIET+GL+ K D ++ IG VE+       NR +   + P 
Sbjct: 30 REVGYSVLDIETSGLNHKRDALLAIGLVEIEEGRIHLNRHWYTLVRPP 77


>gi|330954936|gb|EGH55196.1| exonuclease [Pseudomonas syringae Cit 7]
          Length = 237

 Score = 55.7 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 68/200 (34%), Gaps = 6/200 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ET+GL+   D+++ +GAV + D +    + F+   L  + + +    +     
Sbjct: 42  RWVVLDLETSGLNMNRDQVLSMGAVVIEDGAIDLGQQFERTLLRVDHKISPAVLIHGLAP 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +      +P  + +           ++  +  +A FD   ++  L+      L       
Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLSRALKESLGYRLQHPFFDA 157

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     ++              +    +H A  D+ + +++ + +     +     
Sbjct: 158 AEIAPMLCEHANLRHAGLDDWTRFFGLHAEERHHASADALVTAELALILFSHARRQQIDS 217

Query: 186 KTNEDRFFKEEKKTVPNISL 205
               +    + ++   + S 
Sbjct: 218 PLRLEEALGQWRRRRQSHSF 237


>gi|320547177|ref|ZP_08041471.1| DNA polymerase III [Streptococcus equinus ATCC 9812]
 gi|320448164|gb|EFW88913.1| DNA polymerase III [Streptococcus equinus ATCC 9812]
          Length = 827

 Score = 55.7 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 5/104 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++ N  +  V D+E TG  +    II++G V + +     +T+Q  + P+    +   +
Sbjct: 1   MMQVNSQKYAVVDLEATGAHAM-AEIIQVGIVIIENKKIV-KTYQTDVNPH-EPLTEHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
            L GITDE L   P FS +  + ++  ++    ++AHN KFD  
Sbjct: 58  NLTGITDEQLAKAPDFSQVAQKIYNMISD--CVFVAHNVKFDAN 99


>gi|323351851|ref|ZP_08087502.1| DNA polymerase III [Streptococcus sanguinis VMC66]
 gi|322121908|gb|EFX93640.1| DNA polymerase III [Streptococcus sanguinis VMC66]
          Length = 814

 Score = 55.7 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S N +II+IG V + +   T +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-NAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++   +  A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLNDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                L+         +  L +LC      IS  + H AL D+   + +++K+      +
Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172

Query: 182 NFGF 185
               
Sbjct: 173 PKAL 176


>gi|229592763|ref|YP_002874882.1| putative exonuclease [Pseudomonas fluorescens SBW25]
 gi|229364629|emb|CAY52540.1| putative exonuclease [Pseudomonas fluorescens SBW25]
          Length = 203

 Score = 55.7 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 74/197 (37%), Gaps = 9/197 (4%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V L      +R +Q  +   G +      +L GI+
Sbjct: 3   RIAVIDFETTGITPNSHCRATEIAVVILERGQIVDR-YQSLMN-AGVRVPGFIEQLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--I 124
           +  L+  P    + +E  +F        +AHNA FD  F + EL  I +  L       +
Sbjct: 61  NAMLRSAPPAERVMNEVNEFVGT--TPLMAHNAAFDQKFWDYELGLIRRTRLQKFACSLL 118

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQIN 182
               +           LN+  +      +HR+   A + ++L + +  ++    G  +++
Sbjct: 119 LARRLMPTAPNHKLGTLNAFAQLPHTGKAHRAMADAEMAANLTAHLAQELRSTHGLRELS 178

Query: 183 FGFKTNEDRFFKEEKKT 199
                   +    +   
Sbjct: 179 HELLCTLQKVPAAKINE 195


>gi|228473001|ref|ZP_04057758.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275583|gb|EEK14360.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC
           33624]
          Length = 453

 Score = 55.7 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 66/172 (38%), Gaps = 7/172 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI          T+R F   + P  +K     ++L GI+++
Sbjct: 2   YAIIDIETTGGKMGEEAITEIAIYRFDGQKVTDR-FISLINPE-KKIDDFVVRLTGISNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +     +    ++   +AHNA FD   ++ E +   +   D  R      
Sbjct: 60  TVRQAPKFYEVAKRIVE--ITEDCILVAHNASFDYRVLSLEFR---RLGFDYQRSTLCTV 114

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              ++        +       + I   ++H A  D+     ++  ++   +Q
Sbjct: 115 EMSQRLLPDEPSYSLGKLTRSLGIPLLNRHRANGDAMATVHLFKLLLDRDTQ 166


>gi|260769062|ref|ZP_05877996.1| ribonuclease T [Vibrio furnissii CIP 102972]
 gi|260617092|gb|EEX42277.1| ribonuclease T [Vibrio furnissii CIP 102972]
 gi|315180803|gb|ADT87717.1| ribonuclease T [Vibrio furnissii NCTC 11218]
          Length = 219

 Score = 55.7 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 70/200 (35%), Gaps = 14/200 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++EI AV L            T    + P  G      AL+ +G
Sbjct: 20  VVIDVETAGFNPQTDALLEICAVTLAMDENGDLHPASTIHFHVEPFEGANLEKAALEFNG 79

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                     +     +   A  +AHNA FD GF+ A  +R   
Sbjct: 80  IYDPFSPLRGAVSEEHALKEIYKQVRKEQKAADCSRAIIVAHNAAFDHGFVMAASERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKAAGMAFDNREAHSALYDTQQTAELFCGIV 199

Query: 176 VGGSQINFGFKTNEDRFFKE 195
                +      ++     +
Sbjct: 200 NQWKALGGWPLADDHNLNNK 219


>gi|146309558|ref|YP_001190023.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina ymp]
 gi|145577759|gb|ABP87291.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina
           ymp]
          Length = 235

 Score = 55.7 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 5/138 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+ETTGLD +   I+ +G V L     + +      + P G + S E++  H IT  
Sbjct: 46  VALDVETTGLDPREHAIVSLGLVPLNLQRIRCSEARYWVVKPAG-ELSAESVTFHHITHS 104

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P  +S+  E  +    +       + +        +  R +        IIDT+ 
Sbjct: 105 DIRHAPRLASVLDELLEALAGKVVVA---HYRHIERSFLDQALRRHLGEGLIFPIIDTME 161

Query: 129 IARRKHPSSRNDLNSLCK 146
           +  R HP  R    +  +
Sbjct: 162 LEARLHPKRRVSWWNRLR 179


>gi|330938176|gb|EGH41873.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 203

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 77/207 (37%), Gaps = 7/207 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIERT--REQSFACS 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +ARR  P + N       RY         H A+ D+ + +++   +     Q +    
Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTAYLTNELRQTHGISA 176

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLF 213
            +       +K     I+   + +   
Sbjct: 177 ISHKMLCSLQKVPAAKINETLKRQRGV 203


>gi|303246654|ref|ZP_07332932.1| DNA polymerase III, epsilon subunit [Desulfovibrio fructosovorans
           JJ]
 gi|302491994|gb|EFL51872.1| DNA polymerase III, epsilon subunit [Desulfovibrio fructosovorans
           JJ]
          Length = 240

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D E TG D +   ++ IGAV L   +     +F   + P  R    +A  +HG+TD
Sbjct: 43  FVVVDTELTGFDPRRHAMVAIGAVRLRGLTLLPGESFFSLVRP-SRDVPRDASLIHGLTD 101

Query: 68  EFLKDKP 74
             L D P
Sbjct: 102 AALADAP 108


>gi|290475494|ref|YP_003468382.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Xenorhabdus bovienii SS-2004]
 gi|289174815|emb|CBJ81616.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Xenorhabdus bovienii SS-2004]
          Length = 208

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 64/186 (34%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A+ L    +       T    + P  G    P AL   G
Sbjct: 12  VVIDVETGGFNAQTDALLEIAAITLKMDEEGWLMPADTLHFHIDPFEGANLDPAALAFTG 71

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +   +  +     N   A  +AHNA FD  F+ A  +R    
Sbjct: 72  IDPTNPLRGAVSEYTALHAIFKMIRKGMKDNNCNRAIIVAHNASFDHNFVMAAAERSGLK 131

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C    I       H AL D+   + ++ +++ 
Sbjct: 132 RNPFHPFATFDTAALSGLVLGQTILAKACITAEIPFDSNQAHSALYDTDRTALLFCELVN 191

Query: 177 GGSQIN 182
              ++ 
Sbjct: 192 RWKRLG 197


>gi|237710744|ref|ZP_04541225.1| DNA Pol III epsilon chain [Bacteroides sp. 9_1_42FAA]
 gi|229455466|gb|EEO61187.1| DNA Pol III epsilon chain [Bacteroides sp. 9_1_42FAA]
          Length = 260

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 62/181 (34%), Gaps = 12/181 (6%)

Query: 6   KMR------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           KM+       + FD+ETTG +   DRI+EI  +++   S    T  + + P       ++
Sbjct: 2   KMKLNLKNPIVFFDLETTGTNINTDRIVEICYLKVYPNSN-EETKTMRINPEMH-IPEQS 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGI D  + D P+F  +  E        +      N           L+      + 
Sbjct: 60  SAIHGIYDADVADCPTFKEVAKEIARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMM 119

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             + ID   I  +          S   ++    +    H A  D+    +V    +    
Sbjct: 120 KRKFIDVQVIYHK----LEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLKSQLDRYP 175

Query: 180 Q 180
           +
Sbjct: 176 E 176


>gi|123965921|ref|YP_001011002.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9515]
 gi|123200287|gb|ABM71895.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9515]
          Length = 270

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 67/217 (30%), Gaps = 10/217 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCPNGRKNSPEALKLHGI 65
           + ++ D ETTGLD   D IIEIG +    +  +        FL P     S    +    
Sbjct: 48  KILILDTETTGLDENKDEIIEIGCILF--HVTSKSVLSQVSFLFP----VSSNEAEHVNG 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
               + +          F+    +     +AHN +FD  +         +     S    
Sbjct: 102 ISAEVSNIKQPWEEGLNFFLKLVDCADLIVAHNVEFDKKWFGKGRLPNLEKNWICSLEDI 161

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL--SDVYIKMMVGGSQINF 183
             S  +           +L     +   HR+       S +    +   ++++  ++  F
Sbjct: 162 NWSFQKNLKNRPSVTDLALSFSIPVWSLHRALSDCFYISEVFKKCENLEELLIKATEPRF 221

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
            +K       +   K          +     ++T EE
Sbjct: 222 LYKALVTYSERSLAKKAGFRWNNPAEGAWARKLTVEE 258


>gi|33865550|ref|NP_897109.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8102]
 gi|33632719|emb|CAE07531.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH
           8102]
          Length = 256

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 78/218 (35%), Gaps = 14/218 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ETTGLD + DR +E+GA+     +++    Q FL P     +             +
Sbjct: 29  IIDTETTGLDPEKDRCLEVGAILFDVSTRSVLAQQSFLLPVETNAAEP----INRIPASV 84

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P   +    ++D     +   +AHNA FD  +   +              ++ L   
Sbjct: 85  TRLPQPWTGALRWFDELLTASDVLVAHNAVFDRQWFGRDPLPAVSH--PWLCSMEDLRWP 142

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------MMVGGSQINFG 184
             +   SR  +  L   YG+ +     H AL D + L++V+ +      M++ G +    
Sbjct: 143 AERQLRSRPSVRDLALAYGVPVWSA--HRALTDCNYLAEVFARCDDLETMLLHGLEPRQL 200

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
            +       +   +                R+++ E+ 
Sbjct: 201 MRARVSYDNRHLAREAGFRWNDPVKGAWTRRLSQREVK 238


>gi|329731357|gb|EGG67723.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 784

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +      T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +    +    ++AHN  FD+ FI    +  N        I     
Sbjct: 64  MLQQAPYFNQVAQEIYGKIKD--CIFVAHNVDFDLNFIKKAFKDYNIQYRPKKVIDTLEI 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       L+ L + +GIT    + H A  D+   + + I       ++   
Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175


>gi|312795413|ref|YP_004028335.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454]
 gi|312167188|emb|CBW74191.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454]
          Length = 281

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 5/102 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG     DRI E+G +E+       R +   + P  +   P   +L GITD  +
Sbjct: 47  FVDLETTGGRPGLDRITEVGVIEVDRDGV--RRWSTLVDP-LQPIPPFVQQLTGITDAMV 103

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           +  P+F ++ +E     +     +IAHNA+FD GF+    ++
Sbjct: 104 RGAPTFDALAAELARRLDG--KLFIAHNARFDHGFLKKAFEQ 143


>gi|167772669|ref|ZP_02444722.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
           17241]
 gi|167665147|gb|EDS09277.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
           17241]
          Length = 866

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 25/43 (58%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50
           R +VFD+E+TG D   D I++I AV L         F+ FLCP
Sbjct: 511 RVVVFDVESTGADVYTDDIVQIAAVRLSPGGGEAVRFERFLCP 553


>gi|159897533|ref|YP_001543780.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890572|gb|ABX03652.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 282

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            ++FD+E+TGLD +   RI E+ A+ +      +R  +  + P  R+  P A  ++GI+ 
Sbjct: 26  FVLFDMESTGLDVQIGHRICEMAAMRIQGREIIDRC-EFLVNPQ-REIDPAAFAVNGISA 83

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + + PSF  I+ +    F+E  A  +AHNA FD+GF+ +EL RI+  PL        +
Sbjct: 84  EMVANAPSFGEIWPKVNKLFHE--AVLVAHNAYFDIGFLTSELSRIDLPPL----ETPVI 137

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                          +L             H A+ D   L  V+  ++
Sbjct: 138 DTLALARRYITARRYNLTSLATNLGEKAPSHRAMSDVVALRPVFEHLL 185


>gi|325297487|ref|YP_004257404.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
 gi|324317040|gb|ADY34931.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
          Length = 183

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 9/178 (5%)

Query: 8   RKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
             I  D ET TG   K   I E G   + +   T +T    + P G + S   +++HGI 
Sbjct: 5   NFIAIDFETATG---KRASICEAGICVVRNGEVT-KTRSWLVRPQGNRYSYWNMQIHGIR 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                D P F  +++E  ++  +     +AHNA FDVG I   L+    +  D +     
Sbjct: 61  PNDTVDSPEFPEVWAEISEYLKD-IPILVAHNAAFDVGCIRHSLELYGMEKPDITYYCSL 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            +  +       +            I +   H A  D+ + + ++++ +         
Sbjct: 120 RAARKLYDFGCNSLD---YLCDQFKIPYGRHHRAGDDAEMCARLFLREIKDFGLCGLE 174


>gi|90417008|ref|ZP_01224937.1| ribonuclease T [marine gamma proteobacterium HTCC2207]
 gi|90331355|gb|EAS46599.1| ribonuclease T [marine gamma proteobacterium HTCC2207]
          Length = 221

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 13/193 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S+ D ++EI AV L        +   T    + P  G      AL+  G
Sbjct: 29  VVVDVETGGFNSRTDAMLEIAAVILEMDAQGNIQIKETHSKNIDPFPGAVVEKAALEFTG 88

Query: 65  ITDEFLKDKP--------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I     +  P                         +  +AHNA FD+GF+NA + R    
Sbjct: 89  IDIYDPERMPEEEGEALRDIFRPIRHEISATGCTRSVMVAHNAHFDLGFVNAAVNRNQIK 148

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   +   +RS H AL D+   ++++  ++ 
Sbjct: 149 RNPFHPFSCFDTSTLAGLAYGQTVLAKACQAAKMDFDNRSAHSALYDAVKTAELFCGIVN 208

Query: 177 GGSQINFGFKTNE 189
               +       E
Sbjct: 209 RWKDLGGWPTETE 221


>gi|324993194|gb|EGC25114.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK405]
 gi|327461463|gb|EGF07794.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK1]
 gi|327489318|gb|EGF21111.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK1058]
          Length = 814

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S N +II+IG V + +   T +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-NAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++   +  A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                L+         +  L +LC      IS  + H AL D+   + +++K+      +
Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172

Query: 182 NFGF 185
               
Sbjct: 173 PKAL 176


>gi|297566007|ref|YP_003684979.1| exonuclease RNase T and DNA polymerase III [Meiothermus silvanus
           DSM 9946]
 gi|296850456|gb|ADH63471.1| Exonuclease RNase T and DNA polymerase III [Meiothermus silvanus
           DSM 9946]
          Length = 203

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 13/177 (7%)

Query: 9   KIV---FDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKN-SPEALKLH 63
           ++V    D+ET+GL  + D+I+ +G V +          F   + P+     S E L+ H
Sbjct: 16  EVVYWALDLETSGLKPQ-DQILSVGMVPIRKGVIRYGEHFYSLVRPHRFDTLSLEGLRAH 74

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN------EQNAEWIAHNAKFDVGFINAELQRINKDP 117
            I    L++ P    +  E                  +A   +          +    D 
Sbjct: 75  QIRPFELREAPPLCQVLREVHQRLKEGVLLVHHALVDVAFLRRAYARCDLVWPEPQVVDT 134

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +     +         HP +  +  +  + + + +   + H AL D+   +++++ +
Sbjct: 135 VKLLHKLGQRRALLEPHPETPPENLAKARAF-LDLPPYTAHHALTDALATAEIFLVL 190


>gi|88797051|ref|ZP_01112641.1| DNA polymerase III subunit epsilon [Reinekea sp. MED297]
 gi|88779920|gb|EAR11105.1| DNA polymerase III subunit epsilon [Reinekea sp. MED297]
          Length = 236

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  DIETTGL+++ D II IG V       T  +     +    R  + E++ +H IT 
Sbjct: 48  FVAVDIETTGLNAEQDDIISIGLVPFTAQRITLAKARHWLVR--TRNLTSESVVVHRITH 105

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEW 94
             +   P   ++ SE       +    
Sbjct: 106 SDIAQAPPLRAVLSEVIPCLQGRQVVV 132


>gi|295690334|ref|YP_003594027.1| exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC
           21756]
 gi|295432237|gb|ADG11409.1| Exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC
           21756]
          Length = 297

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 36/118 (30%), Gaps = 6/118 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCPNGRKNSPEALKLHGI 65
             D+ETTGLD K   IIE+  +           +    F  F  P+G    PE   L GI
Sbjct: 45  FVDVETTGLDPKQHEIIELAMIPFRYGLDGVIYEVLEPFHGFRQPSG-PIPPEITALTGI 103

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            D  +  +       +          A     + +F   F      +     +     
Sbjct: 104 DDAMVAGQSINPDAVAAAAAPAALIIAHNAGFDRRFLERFCATFTTKPWACSMREVDW 161


>gi|254240149|ref|ZP_04933471.1| exonuclease [Pseudomonas aeruginosa 2192]
 gi|126193527|gb|EAZ57590.1| exonuclease [Pseudomonas aeruginosa 2192]
          Length = 201

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 15/179 (8%)

Query: 11  VFDIETTGL--------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +FD ETTG+        D     I+E+ A+       T   F+  + PNG + +PE   +
Sbjct: 5   IFDFETTGIPEWKLPSEDPCQPHIVEVAALLCDAAGNTIDRFEAIVRPNGWEITPEMTAI 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+ E   D     +   E +   N + A   AHN  FD       L R   +      
Sbjct: 65  HGISHEQAMDVGISEAEALEGFLAINGRAARRAAHNISFDDRITRIALMRYQDEDAANAF 124

Query: 121 -----SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                       S A+   P ++    +   ++         H A+ D+   + +Y  +
Sbjct: 125 KESGEKFCTCYRSRAQVALPRNKLPTLAEAYKHFTGEDLVEAHRAMPDAQACARIYFAL 183


>gi|77412699|ref|ZP_00788952.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
 gi|77161250|gb|EAO72308.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
          Length = 240

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P  
Sbjct: 130 YVVFDVETTGLSAANNDLIQIAASKMFKGNII-EQFDEFIDPGH 172


>gi|251789330|ref|YP_003004051.1| ribonuclease T [Dickeya zeae Ech1591]
 gi|247537951|gb|ACT06572.1| ribonuclease T [Dickeya zeae Ech1591]
          Length = 226

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L      + + + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDATLHFHIEPFEGAILRPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +     +   A  +AHNA FD  F+ A  +R    
Sbjct: 80  IDPTNPLRGAVSEYEALHEIFKSVRKGIKEQDCNRAIIVAHNATFDHSFLMAAAERCGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C    I       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACIAADIPFDASQAHSALYDTERTAQLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRMG 205


>gi|238898583|ref|YP_002924264.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466342|gb|ACQ68116.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 221

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 66/186 (35%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L    +      ++    + P +G    PEAL  +G
Sbjct: 27  VVIDVETAGFNTKTDALLEIAAVTLFMDKEGWLHIEQSMHFHVEPFSGANFEPEALAFNG 86

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                        +       + A  +AHNA FD  F+    +R    
Sbjct: 87  IDPHSPLRDAKSEFEVLKKIFKWVQKGMKEQYCKRAIIVAHNAGFDHAFVMNAAKRTGLK 146

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   G+       H AL D+   + ++ +++ 
Sbjct: 147 QNPFHPFSTFDTAALSGLALGQTVLAKACLTAGLNFDMSRAHSALYDTQQTARLFCELVN 206

Query: 177 GGSQIN 182
              ++ 
Sbjct: 207 RWKRLG 212


>gi|29839853|ref|NP_828959.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC]
 gi|29834200|gb|AAP04837.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC]
          Length = 249

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D E TGLD K DRIIE  A+          + +  + P+ R  S E+ ++H I+D 
Sbjct: 9  FVCLDCEMTGLDVKKDRIIEFAAMRFTFDKVI-DSMETLINPD-RVISAESQRIHRISDA 66

Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97
           LKD+P  + +F +   F  E +      
Sbjct: 67 MLKDQPRIAEVFPKIKSFLKEGDYIVGHS 95


>gi|88802679|ref|ZP_01118206.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii
           23-P]
 gi|88781537|gb|EAR12715.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii
           23-P]
          Length = 1445

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 74/244 (30%), Gaps = 23/244 (9%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL    +          R ++I                  + P+G     +
Sbjct: 2   YLIFDTETTGLPKTWNAPITNTENWPRCVQIAWQLHDKMGNIIEHNDFLIKPDGYNIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A ++HGI+ E  +++    +     ++    +    +  N  FD+  +  E  R+  +  
Sbjct: 62  AERIHGISTELAEEQGISLAEGLLLFNEVLSKTTFIVGQNLNFDLNIMGCEFYRLGVEDK 121

Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                I      +                    +   ++         H A  D    + 
Sbjct: 122 MTPLPILDTCTEKTALMCQIPGGRGGKFKLPTLTELHQHLFGAGFGDAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
            +++++          K +   F K  +     I +L           K+E D+  + + 
Sbjct: 182 CFLELIRIREFTKEQLKEDVAYFKKYSEANPKPIQVLGLKHINL----KKESDKIRQRLD 237

Query: 230 TLGK 233
            L  
Sbjct: 238 KLKD 241


>gi|290970730|ref|XP_002668233.1| predicted protein [Naegleria gruberi]
 gi|284081517|gb|EFC35489.1| predicted protein [Naegleria gruberi]
          Length = 1135

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 76/217 (35%), Gaps = 17/217 (7%)

Query: 10   IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            +V D+ETTGL   +  I+++G + L     +   F +++ P     S  A KLH      
Sbjct: 890  VVLDLETTGLMPNDHEIVQVGMISL----ISKCAFSIYIKPKYHDWSSHAKKLHVDKMNE 945

Query: 70   LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            + +      I     ++  + N+              N  ++ + K  L   R +   +I
Sbjct: 946  INNGKQLDQIIIPIHNYLTKNNSCTAVVLVHSTSLDRNFLMKALTKHGLPIDRYMIVNTI 1005

Query: 130  ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
            +    P  +  L +L  +    ++  +K    +      D    M+    +  FG   + 
Sbjct: 1006 SEEFFP--KQKLETLFNQVNKPMNTTTKDIIGVAHDAAFDT--AMLFDIIKHKFGDNIDG 1061

Query: 190  ---------DRFFKEEKKTVPNISLLKRDKPLFTRIT 217
                      R   ++K+  PN  +  + K   T   
Sbjct: 1062 VLEACMCFHGRLCGDKKRKKPNHDINTKRKKKKTEPN 1098


>gi|197121230|ref|YP_002133181.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
          K]
 gi|196171079|gb|ACG72052.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
          K]
          Length = 206

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKLHGITDE 68
            D+ET GLD + D I+ +G V +     +   +F   + P       P +++ H +   
Sbjct: 21 ALDLETGGLDPRRDAILAVGMVPVRLGSVRLGESFSTLIRPEATAAIDPGSIRAHQLVPH 80

Query: 69 FLKDKP 74
           +   P
Sbjct: 81 DVASAP 86


>gi|56692916|ref|YP_164280.1| exonuclease [Pseudomonas phage F116]
 gi|48527502|gb|AAT45877.1| exonuclease [Pseudomonas phage F116]
          Length = 201

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 15/179 (8%)

Query: 11  VFDIETTGL--------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +FD ETTG+        D     I+E+ A+       T   F+  + PNG + +PE   +
Sbjct: 5   IFDFETTGIPEWKLPSEDPCQPHIVEVAALLCDAAGNTIDRFEAIVRPNGWEITPEMTAI 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+ E   D     +   E +   N + A   AHN  FD       L R   +      
Sbjct: 65  HGISHEQAMDVGISEAEALEGFLAINGRAARRAAHNISFDDRITRIALMRYQDEDAANAF 124

Query: 121 -----SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                       S A+   P ++    +   ++         H A+ D+   + +Y  +
Sbjct: 125 KESGEKFCTCYRSRAQVALPRNKLPTLAEAYKHFTGEDLVEAHRAMPDAQACARIYFAL 183


>gi|319938082|ref|ZP_08012482.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1]
 gi|319806988|gb|EFW03627.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1]
          Length = 221

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 55/169 (32%), Gaps = 4/169 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             I++D+ETTGL +  D IIEIGA+ + D +    +F     P                 
Sbjct: 39  NYIMYDLETTGL-TNKDHIIEIGAIYVEDNTIV-DSFSALCNPGIFITQRIVEITGITNK 96

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                 P +  +        +++ +  +  N       +     +  K      R +DTL
Sbjct: 97  MLSDKPPEYDVVKQFVEWCNSKETSLAVGQNINSFDNRMLKVATKRFKLNFPFERSLDTL 156

Query: 128 SIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +A       +     N       +       H A+ D   L  ++  +
Sbjct: 157 KMAINMKLKEKGLVASNQQSDLGKLYGIEYVAHRAINDVEALYQIFEHL 205


>gi|302346278|ref|YP_003814576.1| exonuclease [Prevotella melaninogenica ATCC 25845]
 gi|302150299|gb|ADK96560.1| exonuclease [Prevotella melaninogenica ATCC 25845]
          Length = 163

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 54/167 (32%), Gaps = 7/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   +  +G V +        +F   + P          ++HG+T  
Sbjct: 4   FAAIDFET--ANFERCSVCSVGVVIVRGGEIV-DSFYSLIQPEPNYYHWRCTQVHGLTCA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P F  ++ +            +AHNA FD   + A       D  D   +    +
Sbjct: 61  DTDGAPVFCEVWKQIEPMIEG--LPLVAHNASFDKSCLKASFYTYQMDYPDYEFLDTLKA 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R       + L ++    G        H AL D+   + +  +++
Sbjct: 119 ARRHFPHLPDHQLQTVSSACGYE--LTDHHHALADAEACAWIAREIL 163


>gi|332291057|ref|YP_004429666.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169143|gb|AEE18398.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 458

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 66/175 (37%), Gaps = 7/175 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +   +   ++ F   + P  R      + L GI + 
Sbjct: 2   YAILDIETTGGKYNEEGITEIAIYKFDGHQVVDQ-FITLVNPE-RPIQAFVVGLTGINNG 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P F  I     +    +    +AHNA+FD   ++  L+            + ++ 
Sbjct: 60  MLTDAPKFHEIAKRIIE--ITEGCIIVAHNAQFDYRILS--LEFDRLGYPYERTTLCSVE 115

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +++   P   +       +  + I+  ++H A  D+     ++  ++    +   
Sbjct: 116 LSQELLPGHDSYSLGKLTKT-LGIAMSNRHRADGDAIATVKLFKLLLEKDPEKTI 169


>gi|261838819|gb|ACX98585.1| DNA polymerase III epsilon subunit [Helicobacter pylori 51]
          Length = 323

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 111 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 168 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 213


>gi|110637752|ref|YP_677959.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280433|gb|ABG58619.1| DNA polymerase III epsilon subunit [Cytophaga hutchinsonii ATCC
           33406]
          Length = 283

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 5/159 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            FD+ETTG++   DRIIEI  V +   D     +TF+  + P G     ++  +HGI D+
Sbjct: 24  FFDLETTGVNISTDRIIEICIVRVSPPDEKVEVKTFR--VNP-GMPIPDQSSAIHGIYDK 80

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + DKP+F+ I  +   F  + +              I    +   +  +   +++D+  
Sbjct: 81  DVADKPTFTEIAHQINQFMKDCDLGGFNSIRFDIPLLIEEFFRAGIEFDITKRKLVDSQR 140

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           I     P +            +  +H ++   L   ++L
Sbjct: 141 IFHLMEPRTLGAAYKFYCNKDLENAHSAEADTLATYYIL 179


>gi|325269989|ref|ZP_08136598.1| exonuclease [Prevotella multiformis DSM 16608]
 gi|324987712|gb|EGC19686.1| exonuclease [Prevotella multiformis DSM 16608]
          Length = 163

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 7/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   +  +G V +        TF   + P         +++HG+T  
Sbjct: 4   FAAIDFET--ANFERCSVCSVGVVIVRGGEIV-DTFYSLIQPEPNYYHWRCVQVHGLTCA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              D P FS ++              +AHNA FD G + A       D  D        +
Sbjct: 61  DTDDAPVFSEVWKVIEPMIEG--LPLVAHNAPFDKGCLKAAFYTYQMDYPDYEFFDTLKA 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             RR      + L ++    G      + H AL D+   + +  +++
Sbjct: 119 ARRRLPDLPDHQLQTVAAECG--YDLSNHHHALADAEACAWIAREIL 163


>gi|322822112|gb|EFZ28257.1| exonuclease, putative [Trypanosoma cruzi]
          Length = 271

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-------NRTFQVFLCPNGRKNSPEA 59
           M  I  D+ETTG  ++ D I+ IGAVEL     T        R+F   + P+   +    
Sbjct: 49  MSAICVDLETTGFSAQCDDIVSIGAVELRWDGTTLQQWVLGARSFFRTVRPSKPSSHQAE 108

Query: 60  LKLHGITDEFLKDKP 74
                  +      P
Sbjct: 109 AVHGLSFEMLRDAPP 123


>gi|125717716|ref|YP_001034849.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit
           [Streptococcus sanguinis SK36]
 gi|125497633|gb|ABN44299.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit,
           putative [Streptococcus sanguinis SK36]
          Length = 814

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V + +   T +T++  + P+         +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EDLDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++   +  A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                L+         +  L +LC      IS  + H AL D+   + +++K+      +
Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172

Query: 182 NFGF 185
               
Sbjct: 173 PKAL 176


>gi|108563906|ref|YP_628222.1| DNA polymerase III subunit epsilon [Helicobacter pylori HPAG1]
 gi|107837679|gb|ABF85548.1| DNA polymerase III epsilon subunit [Helicobacter pylori HPAG1]
          Length = 323

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 111 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 168 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 213


>gi|306823007|ref|ZP_07456383.1| epsilon subunit family exonuclease [Bifidobacterium dentium ATCC
           27679]
 gi|304553639|gb|EFM41550.1| epsilon subunit family exonuclease [Bifidobacterium dentium ATCC
           27679]
          Length = 186

 Score = 55.3 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 8/175 (4%)

Query: 12  FDIETTGLDS-KNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITDEF 69
            D ETTGL   +   IIEIGA+ +   ++  R  F+  + P  R       +L GI+D  
Sbjct: 2   LDTETTGLHPEEGATIIEIGALLVTPGNENARPRFEQLVDPQ-RPLPEFISRLTGISDGM 60

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           L++KP+  +    F  + ++          IAHNA+FD+GF++A  +  + D  +     
Sbjct: 61  LRNKPTADAAMLRFHQWLDDVWPAGRPLTVIAHNAEFDIGFLDAAERAHDPDANEFDCRW 120

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                   +    +             I    +H AL D+     +Y  +    S
Sbjct: 121 LCTKEMSWELNPQKRHHRVSDLIVDYRIGDVEEHRALSDAIQEQMIYRALCREAS 175


>gi|253580938|ref|ZP_04858200.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847780|gb|EES75748.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 319

 Score = 55.3 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 65/217 (29%), Gaps = 10/217 (4%)

Query: 7   MRKIVFDIE----TTGLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  IVFD+E     +G  ++NDR    IIEIGAV++    +    F   + P   K   +
Sbjct: 1   MNYIVFDLEWNQNPSGKKTRNDRLPFEIIEIGAVKVNSKKEITDHFHRLIKPQVYKWIHD 60

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           ++  H +     KD            +F +    +W                 +      
Sbjct: 61  SI--HEVIHVDYKDLMKGVPFEQAVREFIDWCGEDWYFFTWGNQDVMELQRNMKFYGLLD 118

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                +    + +    S  +  +     + I      K      +   +    K++   
Sbjct: 119 LLPGPVTYYDVQKLYSISYDDGTHRCALEHAIDELKIEKSRGFHRALADAWYTAKVLEKI 178

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
           + I      + D +   +KK               +R
Sbjct: 179 NNIIIINHPSLDVYQNPKKKKDEIHISYPDHDKYVSR 215


>gi|27904678|ref|NP_777804.1| ribonuclease T [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|29611836|sp|P59497|RNT_BUCBP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|27904075|gb|AAO26909.1| ribonuclease T [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 217

 Score = 55.3 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 73/186 (39%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRT--FQVFLCP-NGRKNSPEALKLHG 64
           +V DIET G + + D I+EI  +  ++ ++    +       + P  G +   +A++ HG
Sbjct: 20  VVIDIETAGFNPETDAILEIAIITLKMNEFGLLEKEHLLHFHIQPFKGSRIDKKAIEFHG 79

Query: 65  ITDE--------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   S  ++  +     N   +  +AHNA FD  F+ A + R    
Sbjct: 80  IDPFSPLRRAISEYEALYSIFNLIHKGIKSNNCTKSIIVAHNAIFDYNFLTAAITRTKIK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   +         +  L   CK  G+T  +   H AL D+   ++++ K++ 
Sbjct: 140 NNPFHSFVIFDTATLSGLAVGQTVLARACKAIGLTFDNNQAHSALYDTQQTANLFCKIVN 199

Query: 177 GGSQIN 182
               + 
Sbjct: 200 RWKTLG 205


>gi|269837944|ref|YP_003320172.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787207|gb|ACZ39350.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
          Length = 197

 Score = 55.3 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 66/186 (35%), Gaps = 13/186 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+R+     +  D ETTGLD     I+EI  V+              + P  R   PE  
Sbjct: 18  MLRRRD--VLFLDTETTGLD-GQAEIVEIAVVDAQGTVL----LDTLVRP-LRPIPPEVQ 69

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGITD  +   P +  + +E       +    + +NA FD   I    Q+    P   
Sbjct: 70  AIHGITDRMVAGAPRWPEVHAELV-RLFRERPRAVVYNAAFDRRVIAQTAQQHCLPPPTA 128

Query: 121 SRIIDTLSIA----RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                 L  A     R   + +   + L +        R  H AL D+ +   V   M  
Sbjct: 129 EWHCAMLRYAAYAGERHPVTGKYRWHRLDRAAAALGIPRPTHRALGDALVCRGVVAAMAG 188

Query: 177 GGSQIN 182
            G ++ 
Sbjct: 189 LGGRLG 194


>gi|330804902|ref|XP_003290428.1| hypothetical protein DICPUDRAFT_154946 [Dictyostelium purpureum]
 gi|325079439|gb|EGC33039.1| hypothetical protein DICPUDRAFT_154946 [Dictyostelium purpureum]
          Length = 175

 Score = 55.3 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50
            D ETTGL    D IIE+  ++L D       F   + P
Sbjct: 32 FLDTETTGLSVATDEIIEVSIIDLYD----GSHFYKLINP 67


>gi|213962688|ref|ZP_03390949.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena
           Capno]
 gi|213954683|gb|EEB66004.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena
           Capno]
          Length = 442

 Score = 55.3 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 7/175 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +   ++ T++ F   + P  R       KL GI ++
Sbjct: 2   YAILDIETTGGKYDEEGITEIAIYQFDGHTITDQ-FISLINPE-RPIQDYVTKLTGINNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P F  I     +    +    + HNA FD   +  E +R+  + +  +     LS
Sbjct: 60  MLRNAPKFYEIAKRIVE--ITEGCIIVGHNAAFDYRILQTEFRRLGYEYIKTTLCTVELS 117

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                   S +          + I    +H A  D+    +++  ++   ++ + 
Sbjct: 118 QQLIPDKESYSL---GKLVRSLGIPMSERHRASGDAMATLNLFKYLLEKDTKKSI 169


>gi|298737180|ref|YP_003729710.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8]
 gi|298356374|emb|CBI67246.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8]
          Length = 323

 Score = 55.3 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 111 FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 168 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 213


>gi|42524627|ref|NP_970007.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
 gi|39576837|emb|CAE78066.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
          Length = 276

 Score = 55.3 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 6/168 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD ET+G       ++E GAV+     +  R  Q    P     +   + +HGIT+E
Sbjct: 12  YVAFDTETSGAYPVGHDVVEFGAVKWYKGEEVGR-LQFLFKP-REPMTDFIIGIHGITNE 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P  +    E  +FF    A  +AH+A FD+GF+  + ++     L    +  +L 
Sbjct: 70  MVADAPLITEKIREIHEFFKG--AIVMAHHAPFDLGFMAIDFEKNQLPLLPEPALCTSLL 127

Query: 129 IARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKM 174
             +  H    + L +L +   I    +HR+   A    H+    + KM
Sbjct: 128 SRKWIHGVENHKLQTLVRHLNIDGGQAHRAYDDAKACLHVGLACFAKM 175


>gi|295677334|ref|YP_003605858.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
 gi|295437177|gb|ADG16347.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
          Length = 382

 Score = 55.3 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  +   RI E+G VE+     +   +   + P  +       +L GIT++ 
Sbjct: 16  VFVDLETTGGSTSEHRITEVGVVEVGPAGVS--RWSSLVDPQ-QPIPSFIQQLTGITNDM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           ++  P+F SI    ++  N     ++AHNA FD GF+ +E +
Sbjct: 73  VRGAPTFESIAPALFERLNG--KLFVAHNASFDRGFLRSEFR 112


>gi|302879827|ref|YP_003848391.1| Exonuclease RNase T and DNA polymerase III [Gallionella
          capsiferriformans ES-2]
 gi|302582616|gb|ADL56627.1| Exonuclease RNase T and DNA polymerase III [Gallionella
          capsiferriformans ES-2]
          Length = 234

 Score = 55.3 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ 45
          R +V D+ET+GL+   DR+I IGAV +++       +F 
Sbjct: 41 RCVVVDVETSGLNLWEDRLISIGAVAVVNGKIELGDSFY 79


>gi|320330625|gb|EFW86603.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 237

 Score = 55.3 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 68/200 (34%), Gaps = 6/200 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ET+GL+   D+++ +GAV + D +    + F+   L  + + +    +     
Sbjct: 42  RWVVLDLETSGLNMNRDQVLSMGAVVIEDGAIDLGQQFERTLLRVDHKISPAVLIHGLAP 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +      +P  + +           ++  +  +A FD   ++  L+      L       
Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLSRALKESLGYRLQHPFFDA 157

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     ++              +    +H A  D+ + +++ + +     +     
Sbjct: 158 AEIAPMLCEHANLRHAGLDDWTRFFGLHAEERHHASADALVTAELALILFSDARRQQIDS 217

Query: 186 KTNEDRFFKEEKKTVPNISL 205
               +    + ++   + S 
Sbjct: 218 PLRLEEALGQWRRRRQSHSF 237


>gi|320322651|gb|EFW78744.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330564|gb|EFW86543.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 204

 Score = 55.3 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 3/168 (1%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V +         FQ  +   G +       L GI+
Sbjct: 4   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIV-ELFQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF           +             +  ++      ++  
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGATPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +           L S  +      +HR+   A + ++L + +  ++
Sbjct: 122 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 169


>gi|260102659|ref|ZP_05752896.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260083529|gb|EEW67649.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
          Length = 249

 Score = 55.3 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 1/94 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIETTGLD   D+II IGAV+ +  SK  R F   +  +    +  +      +++ 
Sbjct: 128 VALDIETTGLDITKDQIISIGAVKYISKSKCER-FYRLIKTDYEIPTHISKITQLTSEKL 186

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
            +          +   F  ++       N   + 
Sbjct: 187 NQSGIELFDALEDLKKFLADRLIVGYNLNFDINF 220


>gi|146301193|ref|YP_001195784.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
 gi|146155611|gb|ABQ06465.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
          Length = 453

 Score = 55.3 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 7/212 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +   +   ++ F   + P      P  +KL GI + 
Sbjct: 2   YAILDIETTGGQFNEEGITEIAIYKFDGHEVVDQ-FISLVNPE-IPIQPFVVKLTGINNA 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  +     +     +   +AHNA FD   +  E +R+  D    +     L+
Sbjct: 60  MLRSAPKFYEVAKRIIE--ITTDCVIVAHNASFDYRILRTEFRRLGYDFEAKTLCTVELA 117

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   S +          + I    +H A  D+   + ++  ++    +        
Sbjct: 118 KKLIPEQPSYSL---GKLVRALGIPMADRHRASGDAMATTKLFKMLLEKDVEKTIVKDFI 174

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           +    K       +I      K     I KE+
Sbjct: 175 KLEVEKGISPKFLDIVNQMPAKTGVYYIYKED 206


>gi|163756168|ref|ZP_02163283.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
 gi|161323780|gb|EDP95114.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
          Length = 454

 Score = 55.3 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 7/187 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI       +   ++ F   + P  R+  P  + L GI   
Sbjct: 2   YAIVDIETTGGKYNEEGITEIAIYRFDGHEVVDQ-FISLVNPE-REIQPFVVNLTGINSR 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P F  +     +    ++   +AHNA FD   +  E +R+  +    S     LS
Sbjct: 60  MLRDAPKFYEVAKRIVE--ITEDCIIVAHNASFDYRILQLEFKRLGFEYKRKSLCTVELS 117

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   S            + I    +H A  D+     ++  ++   S+ N   +  
Sbjct: 118 KKLIPEMESYKL---GKLVRALGIPMSDRHRASGDALATVKLFQLLLDKDSEKNIIQQAV 174

Query: 189 EDRFFKE 195
           +    K+
Sbjct: 175 KTEIKKK 181


>gi|87118535|ref|ZP_01074434.1| exonuclease [Marinomonas sp. MED121]
 gi|86166169|gb|EAQ67435.1| exonuclease [Marinomonas sp. MED121]
          Length = 230

 Score = 55.3 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 52/175 (29%), Gaps = 6/175 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+ETTGLD+  DR+I +G V + +   K +    + L  +      + + +H ITD
Sbjct: 38  YLVLDMETTGLDATKDRVISLGWVLIKNGAIKLSSARHILL--DNGPVDEKTVAIHMITD 95

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +     S+   +           + H                             +
Sbjct: 96  QDISELGRNPSVAMRYLRQLLLDKVLVVHHAPIEQAFLEKLWQAHKLNPLTQVMLDTLAM 155

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL---DSHLLSDVYIKMMVGGS 179
               +         ++              +       D+   +++ +  +    
Sbjct: 156 ERDTQMRKQYMLTSDAFRLGECRKRYGLPDYQGHDALGDAQATAELLLAQLNHAG 210


>gi|312128938|ref|YP_003996278.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella
           byssophila DSM 17132]
 gi|311905484|gb|ADQ15925.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella
           byssophila DSM 17132]
          Length = 303

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 74/215 (34%), Gaps = 10/215 (4%)

Query: 7   MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M  +  D ET T   ++ D   EIG   + D      T    + P   +     + +HGI
Sbjct: 1   MEFVTIDFETAT---AQRDSPCEIGLTFVQDGQII-DTKSWLIKPMYDEFDYFNILIHGI 56

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E + DKP F+ ++SE       +    IAHNA FD+  +   L+         +    
Sbjct: 57  RPEHVADKPEFNELWSEIKPLVENKF--LIAHNAGFDISVLRRTLEAYQLPFPTLNYSCS 114

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +   +        DL +LCK       +   H A  DS   +++ +K        +   
Sbjct: 115 YIFSKKVWQGLPAYDLKTLCKVNN---INLKHHRAGADSKATAELTLKAFEIAGVSSIDD 171

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
              + +    +           +       +TK E
Sbjct: 172 FPEKLKTTVGQLYNGGYKPAETKRIYKAKDLTKIE 206


>gi|227488080|ref|ZP_03918396.1| DNA polymerase III epsilon subunit (exonuclease) [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091942|gb|EEI27254.1| DNA polymerase III epsilon subunit (exonuclease) [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 427

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 6/174 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ET   +  +    +I  V++      +R F   L P    +  E    HGI+ 
Sbjct: 253 KFVAVDFET--ANRSSRSACQIAMVKVEYGQIVDR-FSTLLKPPPGHDEFEFTYFHGISA 309

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D PS+  +      F         AHNA FD G   +         L         
Sbjct: 310 RDVADAPSWKFVEPYIRAFV--DRLPVYAHNASFDRGVWVSMDSYYGTRTLPEEFYCSYR 367

Query: 128 SIARRKHPSSRNDLNSLCKRYG-ITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  R         L ++ K           +  +  ++  L  + ++M+   S+
Sbjct: 368 TAKRLIPGLENYKLPTVTKAIAPWFRLDHHRADSDAEACALIVIGLQMLESYSE 421


>gi|288818861|ref|YP_003433209.1| exonuclease [Hydrogenobacter thermophilus TK-6]
 gi|288788261|dbj|BAI70008.1| exonuclease [Hydrogenobacter thermophilus TK-6]
 gi|308752448|gb|ADO45931.1| Exonuclease RNase T and DNA polymerase III [Hydrogenobacter
          thermophilus TK-6]
          Length = 216

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPN 51
           +V D ETTGLD K D  I IGA+++ D     +++F   + P 
Sbjct: 42 FVVCDTETTGLDLKKDEPIAIGALKVKDLCIDLSQSFYRLIKPQ 85


>gi|197285252|ref|YP_002151124.1| ribonuclease T [Proteus mirabilis HI4320]
 gi|227355678|ref|ZP_03840072.1| exoribonuclease T [Proteus mirabilis ATCC 29906]
 gi|194682739|emb|CAR42945.1| ribonuclease T [Proteus mirabilis HI4320]
 gi|227164285|gb|EEI49178.1| exoribonuclease T [Proteus mirabilis ATCC 29906]
          Length = 212

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 72/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      + K + T    + P  G    P AL+  G
Sbjct: 20  VVIDVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVDPFEGANLEPAALEFTG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +     N   A  +AHNA FD  F+ A  +R    
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKMVRKGMKDANCNRAIIVAHNANFDHSFVMAAAERAGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI    +  HGAL D++  S ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTILAKACITAGIPFDSKLAHGALYDTNRTSLLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKKLG 205


>gi|313674243|ref|YP_004052239.1| exonuclease RNAse t and DNA polymerase iii [Marivirga tractuosa
          DSM 4126]
 gi|312940941|gb|ADR20131.1| Exonuclease RNase T and DNA polymerase III [Marivirga tractuosa
          DSM 4126]
          Length = 267

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
          ++FD+ETTG +  NDRI+E   V+++ D      T    + P  R    E+  +HGI D+
Sbjct: 10 VIFDLETTGTNVVNDRIVEYSFVKVMPDGDVIKNT--EKVNPE-RPIPLESSLIHGIYDK 66

Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
           +KDKP+F ++  E   F +  +     
Sbjct: 67 DVKDKPTFKAMAKELSSFLHGCDLAGFN 94


>gi|92114250|ref|YP_574178.1| ribonuclease T [Chromohalobacter salexigens DSM 3043]
 gi|122419726|sp|Q1QVM9|RNT_CHRSD RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|91797340|gb|ABE59479.1| RNAse T [Chromohalobacter salexigens DSM 3043]
          Length = 221

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 67/202 (33%), Gaps = 15/202 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-----------NGRK 54
           +V D+ET G +++ D ++EI AV L          + T    + P           +   
Sbjct: 20  VVVDLETGGFNAQRDALLEIAAVTLTMDAQGNLMPDDTHAFHVRPFEGANIEQAALDFTG 79

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              ++     +                +         A  + HNA FD GF+NA ++R  
Sbjct: 80  IDLDSPLRQQVALSEHDALGEIFKPVRKAIKANQCTRAILVGHNAAFDQGFLNAAVERNG 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                        +         +  L   C+  GI   + S H A  D+   ++++  M
Sbjct: 140 IKRNPFHPFSCFDTATLGGLVYGQTVLARACRAAGIEFDNASAHSARYDTERTAELFCAM 199

Query: 175 MVGGSQINFGFKTNEDRFFKEE 196
           +     +       +++   E+
Sbjct: 200 VNRYKNLGGWDLALKEQGMDED 221


>gi|68248930|ref|YP_248042.1| ribonuclease T [Haemophilus influenzae 86-028NP]
 gi|81336659|sp|Q4QNL5|RNT_HAEI8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|68057129|gb|AAX87382.1| ribonuclease T [Haemophilus influenzae 86-028NP]
          Length = 229

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   +PE+LK +G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +        + Q +  +AHNA FD  F+ A  +R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAERTGVK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + +       +  L   C+   I    +  H AL D+   + ++  M+ 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQAAKIPFDGKQAHSALYDTERTAKLFCYMVN 202

Query: 177 GGSQIN 182
               + 
Sbjct: 203 HLKDLG 208


>gi|145628675|ref|ZP_01784475.1| ribonuclease T [Haemophilus influenzae 22.1-21]
 gi|145638764|ref|ZP_01794373.1| ribonuclease T [Haemophilus influenzae PittII]
 gi|144979145|gb|EDJ88831.1| ribonuclease T [Haemophilus influenzae 22.1-21]
 gi|145272359|gb|EDK12267.1| ribonuclease T [Haemophilus influenzae PittII]
 gi|309750254|gb|ADO80238.1| Ribonuclease T [Haemophilus influenzae R2866]
          Length = 229

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   +PE+LK +G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +        + Q +  +AHNA FD  F+ A  +R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRRQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + +       +  L   C+   I    +  H AL D+   + ++  M+ 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQAAKIPFDGKQAHSALYDTERTAKLFCYMVN 202

Query: 177 GGSQIN 182
               + 
Sbjct: 203 HLKDLG 208


>gi|297194325|ref|ZP_06911723.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152225|gb|EFH31608.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 658

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 9/175 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+ET+GL ++ DR++ +  V +  D ++T   F   L P      P  + +HG+T E L
Sbjct: 23  VDVETSGLVARRDRVLSVAVVTVGPDGAQTGE-FSTLLDPG---CDPGPVHVHGLTAERL 78

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P+F  +               +AHNA+FD  F+  E  R         R+       
Sbjct: 79  HGAPAFEEVAQRISQMLEG--RVLVAHNAQFDYDFLAHEFARAGVSLPVARRLCTLALNR 136

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           R   P+    L +L   YG+       H AL D+ +L+ V    +   ++++   
Sbjct: 137 RVDPPTQDLRLGTLAAHYGVP--QLRAHDALDDTRVLAGVLRASLREAARLDLRL 189


>gi|85713183|ref|ZP_01044214.1| 3'-5' exonuclease [Idiomarina baltica OS145]
 gi|85693007|gb|EAQ30974.1| 3'-5' exonuclease [Idiomarina baltica OS145]
          Length = 217

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 52/182 (28%), Gaps = 6/182 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNR-TFQVF-LCPNGRKNSPEALKLHGI 65
            I  DIETTGLD  ND+I+ I  V +           +  F + P+        +     
Sbjct: 29  YIAIDIETTGLDPINDQILSIAWVPIKPPMILIGEAQYHEFCVDPDVDLQQSPTIHGLTK 88

Query: 66  TDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                    K     +  + +      +   +  +   D                  S  
Sbjct: 89  AQLSSGGDVKKVLKDLEDKLYGCVMVCHHRSLDWSYLRDNRLTENLHFEPLGVFDTLSFE 148

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            + +S        + +   + C+         + H A+ D+   +++++         N 
Sbjct: 149 KNKMSFDNEFQLHNSSLTLAACRTRHGLPI-YTSHHAMDDAIACAELFLAQATKIKPHNE 207

Query: 184 GF 185
             
Sbjct: 208 KL 209


>gi|330446342|ref|ZP_08309994.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490533|dbj|GAA04491.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 249

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL++  D II +G V   +      ++    + P  +    E++ +HGIT 
Sbjct: 59  FVALDFETTGLNANKDDIISVGLVPFTIHRIYCKQSQHWVVKPKSK-LDEESVIIHGITH 117

Query: 68  EFLKDKP 74
             ++  P
Sbjct: 118 SDVQTAP 124


>gi|153829541|ref|ZP_01982208.1| ribonuclease T [Vibrio cholerae 623-39]
 gi|148875001|gb|EDL73136.1| ribonuclease T [Vibrio cholerae 623-39]
          Length = 243

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 72/203 (35%), Gaps = 14/203 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L            T    + P  G      AL+  G
Sbjct: 39  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                  +  +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 99  IYDPFSPLRGAVSEDHALKEIYRLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 159 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 218

Query: 176 VGGSQINFGFKTNEDRFFKEEKK 198
                +      N+D  +  +  
Sbjct: 219 NQWKALGGWPLVNDDEDYNNDAD 241


>gi|269102313|ref|ZP_06155010.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162211|gb|EEZ40707.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 242

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+SK D I+ IG +   +    + +     + P  R  + E++ +HGIT 
Sbjct: 52  FVALDFETTGLNSKTDDIVSIGLIPFTIHRIYSKQAQHWVVKPK-RPLAEESVVIHGITH 110

Query: 68  EFLKDKPSFSSIFSEFWDFF 87
             ++  P    I  +  D  
Sbjct: 111 SDIQAAPDLRRILDQVLDAL 130


>gi|153836296|ref|ZP_01988963.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810]
 gi|149750571|gb|EDM61316.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810]
          Length = 247

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 68/180 (37%), Gaps = 17/180 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+++ D I+ IG V   +D  + + +    + PN R+ + E++ +HGITD
Sbjct: 57  FVSVDFETTGLNAEEDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITD 115

Query: 68  EFLKDKPSFSSIFSE------------FWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             +K+ P  + I  E             +     Q       N   +            +
Sbjct: 116 SEVKNAPQLTQILGEILDALAGKVVLVHYKNIERQFFYNALLNTIGEGIQFPVVDTLDIE 175

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             L         +  + K P S    ++  +     +     H AL D+   ++++   +
Sbjct: 176 YALQRRECSGIWNKLKGKKPGSVRLGHARERYG---LPAYQPHHALTDALATAELFQAQL 232


>gi|91792755|ref|YP_562406.1| ribonuclease T [Shewanella denitrificans OS217]
 gi|123356922|sp|Q12PE3|RNT_SHEDO RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|91714757|gb|ABE54683.1| RNAse T [Shewanella denitrificans OS217]
          Length = 226

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 73/206 (35%), Gaps = 13/206 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++  D ++EI    +++ D      ++T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNANTDALLEIAVTLLKMNDDGILVLDKTVHFHIEPFEGANLEPEALAFNG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +     +   +  +AHNA FD+ F+N  ++R +  
Sbjct: 80  IDPTNPLRGAVSEKEAFLEIFKTVKKGQKASDCHRSIIVAHNAAFDLSFVNKAIERNDLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L   CK  GI   ++  H AL D+   ++++  ++ 
Sbjct: 140 RSPFHPFASFDTATLAGLSIGHTVLAKACKMAGIDFDNKEAHSALYDTERTAELFCHIVN 199

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
               +        ++   E       
Sbjct: 200 RWKALGGWPLATPEQSAIENTDEKIE 225


>gi|319777750|ref|YP_004137401.1| DNA polymerase iii alpha subunit [Mycoplasma fermentans M64]
 gi|318038825|gb|ADV35024.1| DNA polymerase III alpha subunit [Mycoplasma fermentans M64]
          Length = 1461

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 2/188 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FDIETTGL  +   IIE G++ +    K  R  Q F+                    
Sbjct: 426 YVSFDIETTGLCPRFAVIIEYGSLPIHSNMKYGRKTQFFIKCQEPIKPFTENLTGITNAM 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             K          + ++  N      +AHNA+FD  F+  + ++   +  + + I   + 
Sbjct: 486 IEKSGLELKEALQKIYNDLNG--KIALAHNARFDFNFLKEKFRQAKIEFPNVTVIDTLIV 543

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  + ++ L  +  R G+       H    D+ +L++V++ +M    +        
Sbjct: 544 SRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDYDAKVLAEVWVALMDELGKKGILTFNQ 603

Query: 189 EDRFFKEE 196
            + + K++
Sbjct: 604 LNSYIKDD 611


>gi|330903518|gb|EGH34090.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 147

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 3/144 (2%)

Query: 35  LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW 94
           +    T R F V+L P+ R++   A+ +HGIT+EFL  KP F+ +  EF++F        
Sbjct: 1   IGRRLTGRHFHVYLQPD-RESDEGAIGVHGITNEFLVGKPRFAEVADEFFEFIKGAQLII 59

Query: 95  --IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
              A +  F          +   D      ++DTL +AR +HP  RN L++LCKRYG+  
Sbjct: 60  HNAAFDVGFINNEFALMGSQDRADITQHCSVLDTLMMARERHPGQRNSLDALCKRYGVDN 119

Query: 153 SHRSKHGALLDSHLLSDVYIKMMV 176
           S R  HGALLDS +L+DVY+ M  
Sbjct: 120 SGRELHGALLDSEILADVYLAMTG 143


>gi|77359544|ref|YP_339119.1| DNA polymerase [Pseudoalteromonas haloplanktis TAC125]
 gi|76874455|emb|CAI85676.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 207

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 7/172 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K R +V D+E TGLD+K   I+ +  V + +        Q  +    +  +   +  HGI
Sbjct: 22  KQRYLVIDLELTGLDAKQHEIVSLAWVVIENQCIKMSQSQHLINKEVKNLAQSPVY-HGI 80

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRII 124
            ++ +    S  SI     + FN+     + HNA  D GF+   L+              
Sbjct: 81  NNDNVAAGQSLHSILEHLSEHFND--CILVFHNAMLDWGFLKPALKNANITTRPKLILCT 138

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL---DSHLLSDVYIK 173
             +   R +H       + L             +       D+   +++++ 
Sbjct: 139 LQIEKKRLQHQGVEIKQDDLTLNECRNRYELPSYHCHHALTDAQATAELFLA 190


>gi|16272277|ref|NP_438489.1| ribonuclease T [Haemophilus influenzae Rd KW20]
 gi|260581209|ref|ZP_05849028.1| ribonuclease T [Haemophilus influenzae RdAW]
 gi|1173107|sp|P44639|RNT_HAEIN RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|1573293|gb|AAC21987.1| ribonuclease T (rnt) [Haemophilus influenzae Rd KW20]
 gi|260092134|gb|EEW76078.1| ribonuclease T [Haemophilus influenzae RdAW]
          Length = 229

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   +PE+LK +G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +        + Q +  +AHNA FD  F+ A  +R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + +       +  L   C+   I    +  H AL D+   + ++  M+ 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQAAKIPFDGKQAHSALYDTERTAKLFCYMVN 202

Query: 177 GGSQIN 182
               + 
Sbjct: 203 HLKDLG 208


>gi|257094710|ref|YP_003168351.1| Exonuclease RNase T and DNA polymerase III [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047234|gb|ACV36422.1| Exonuclease RNase T and DNA polymerase III [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 469

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 8/171 (4%)

Query: 14  IETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDK 73
           +ETTG +   DRI +IG +E      +  T+   + P  R       +L+G  D  + D 
Sbjct: 11  LETTGANPLRDRITKIGVLEAEGDRVS--TWSTLVNPQ-RPIPEFIQQLNGSRDATVADA 67

Query: 74  PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK 133
           P+F+ + +E  D  + +              +   + +         + ++ T+ ++R+ 
Sbjct: 68  PTFAQVAAELADRLHGRLFIA----HHARFNYAFVKREFQRLGKSFRADVLCTVRLSRKL 123

Query: 134 HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            P  +              +     GAL  +HLL   +  +     +    
Sbjct: 124 FPEHQKHHLESLMVRHDL-TTGVHSGALAAAHLLGQFWCVLKRERGEEALA 173


>gi|238810189|dbj|BAH69979.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 1467

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 2/188 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FDIETTGL  +   IIE G++ +    K  R  Q F+                    
Sbjct: 432 YVSFDIETTGLCPRFAVIIEYGSLPIHSNMKYGRKTQFFIKCQEPIKPFTENLTGITNAM 491

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             K          + ++  N      +AHNA+FD  F+  + ++   +  + + I   + 
Sbjct: 492 IEKSGLELKEALQKIYNDLNG--KIALAHNARFDFNFLKEKFRQAKIEFPNVTVIDTLIV 549

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  + ++ L  +  R G+       H    D+ +L++V++ +M    +        
Sbjct: 550 SRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDYDAKVLAEVWVALMDELGKKGILTFNQ 609

Query: 189 EDRFFKEE 196
            + + K++
Sbjct: 610 LNSYIKDD 617


>gi|311110686|ref|ZP_07712083.1| putative DnaQ family exonuclease/DinG family helicase
          [Lactobacillus gasseri MV-22]
 gi|311065840|gb|EFQ46180.1| putative DnaQ family exonuclease/DinG family helicase
          [Lactobacillus gasseri MV-22]
          Length = 937

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 9  KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            V D+ETTG   ++ D II+ G   +       +T+   + P+ R+       L  I++
Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKKRKVV-KTYSFLINPH-REIPQAVENLTHISN 67

Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
            +     F+    +               N 
Sbjct: 68 RDVAQARDFNYYAPKIRKILENTIFVAHNVNF 99


>gi|116629671|ref|YP_814843.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238854243|ref|ZP_04644587.1| putative DnaQ family exonuclease/DinG family helicase
          [Lactobacillus gasseri 202-4]
 gi|116095253|gb|ABJ60405.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238833054|gb|EEQ25347.1| putative DnaQ family exonuclease/DinG family helicase
          [Lactobacillus gasseri 202-4]
          Length = 937

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 9  KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            V D+ETTG   ++ D II+ G   +       +T+   + P+ R+       L  I++
Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKKRKVV-KTYSFLINPH-REIPQAVENLTHISN 67

Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
            +     F+    +               N 
Sbjct: 68 RDVAQARDFNYYAPKIRKILENTIFVAHNVNF 99


>gi|153839656|ref|ZP_01992323.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810]
 gi|260900787|ref|ZP_05909182.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|149746830|gb|EDM57818.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810]
 gi|308106848|gb|EFO44388.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
          Length = 239

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+ +   II IG V                + P  +K   +++ +HGIT 
Sbjct: 49  FVALDFETTGLNPEKHDIITIGLVPFNLRRIFLRDARHWKVRPQ-KKLDEDSVIIHGITH 107

Query: 68  EFLKDKP 74
             L D P
Sbjct: 108 SELIDAP 114


>gi|149377478|ref|ZP_01895220.1| exonuclease [Marinobacter algicola DG893]
 gi|149358245|gb|EDM46725.1| exonuclease [Marinobacter algicola DG893]
          Length = 236

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP 57
          R IV D+ETTGL+   D +I IGAV +  +    +  F + L       S 
Sbjct: 40 RLIVLDLETTGLNPAKDNVIAIGAVAIRHNAIDLSDQFDLILRRPELDISE 90


>gi|27365569|ref|NP_761097.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
 gi|37680285|ref|NP_934894.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016]
 gi|320155964|ref|YP_004188343.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
 gi|27361717|gb|AAO10624.1| DNA polymerase III epsilon subunit [Vibrio vulnificus CMCP6]
 gi|37199032|dbj|BAC94865.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
 gi|319931276|gb|ADV86140.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
          Length = 238

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+     I+ IG V    +     +     + P  + +  E++ +HGIT  
Sbjct: 49  VALDFETTGLNPNQHDILSIGLVPFDLHRIRLQQARYWTVKPEDQLH-EESVVIHGITHS 107

Query: 69  FLKDKPSFSSIFSEFWDFF 87
            ++  P    +  E  D  
Sbjct: 108 KVQRAPDLIDVLDEVLDCL 126


>gi|332885444|gb|EGK05693.1| hypothetical protein HMPREF9456_02495 [Dysgonomonas mossii DSM
           22836]
          Length = 256

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 64/190 (33%), Gaps = 8/190 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I FD+ETTG D+  DRI+E+  +++  +  +  +T    + P        A  +HGI+DE
Sbjct: 10  IFFDLETTGTDTVKDRIVELSYLKVYPNGKEEMKT--RRINPE-MPIPAGATAIHGISDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P+F  I     D     +      +           L+          ++ID   
Sbjct: 67  DVKDCPTFKQIAKSLADQMEGCDLAGFNSSRFDIPLLAEEFLRADVDIDFSKRKMIDVQI 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I  +              ++       + H A  D+    +V    +     +    +  
Sbjct: 127 IFHK----KEQRTLEAAYKFYCDKDLDNAHSAEADTLATYEVLKAQLDKYPDLENDMEKL 182

Query: 189 EDRFFKEEKK 198
              F      
Sbjct: 183 AAEFSFFNNN 192


>gi|59713532|ref|YP_206307.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
 gi|59481780|gb|AAW87419.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
          Length = 259

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 51/178 (28%), Gaps = 8/178 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
            N M   V D ET+GL+ K D I+ +G V ++D     +      +      ++ +  + 
Sbjct: 61  SNDMAFTVVDFETSGLNPKTDHIVSVGWVHIIDGVIKLSSAQHHIINEPTSISAEDGHEE 120

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK------- 115
                  L              +   E     +  N     G    +             
Sbjct: 121 REHIARSLHHILPEQQKMGISLEEAMECFFSNLPSNILVVHGATIEQRFLEQFILSLQLP 180

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +          +     +    + D      R    +     H AL+D+   +++++ 
Sbjct: 181 NLPIIWLDTLRIEQNTIQQNRYQRDFRLFSLRRQYKLPDYPAHHALVDAISTAELFLA 238


>gi|325128513|gb|EGC51390.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis N1568]
          Length = 470

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+IE+  V+          +   + P  +        L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVIEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          +AHN++FD  F+    +         S  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRVGIGFSSPALCS 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192


>gi|82751054|ref|YP_416795.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122]
 gi|123549199|sp|Q2YY51|DING_STAAB RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|82656585|emb|CAI81008.1| probable ATP-dependent DNA helicase [Staphylococcus aureus RF122]
          Length = 897

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +  +   T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRN-IQIIDTYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +    +D   +    ++AHN  FD+ FI    +  N        I     
Sbjct: 64  MLQQAPYFNQVAQGIYDNMKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKRVIDTLEI 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                       L+ L + +GIT    + H A  D+   + + I       ++   
Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175


>gi|163800687|ref|ZP_02194587.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
 gi|159175036|gb|EDP59833.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
          Length = 239

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+ + + II IG V    +     +     + P   K   E++ +HGIT 
Sbjct: 49  FVALDFETTGLNPQKNGIITIGLVPFSLNRIFLRQARHWKVRPQ-EKLDEESVIIHGITH 107

Query: 68  EFLKDKPSFSSIFSEFWDFF 87
             L D P    I     +  
Sbjct: 108 NELVDAPDLDEILGPLLESL 127


>gi|309801335|ref|ZP_07695464.1| exonuclease [Bifidobacterium dentium JCVIHMP022]
 gi|308222224|gb|EFO78507.1| exonuclease [Bifidobacterium dentium JCVIHMP022]
          Length = 187

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 8/175 (4%)

Query: 12  FDIETTGLDS-KNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITDEF 69
            D ETTGL   +   IIEIGA+ +   ++  R  F+  + P  R       +L GI+D  
Sbjct: 3   LDTETTGLHPEEGATIIEIGALLVTPGNENARPRFEQLVDPQ-RPLPEFISRLTGISDGM 61

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           L++KP+  +    F  + ++          IAHNA+FD+GF++A  +  + D  +     
Sbjct: 62  LRNKPTADAAMLRFHQWLDDVWPAGRPLTVIAHNAEFDIGFLDAAERAHDPDANEFDCRW 121

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                   +    +             I    +H AL D+     +Y  +    S
Sbjct: 122 LCTKEMSWELNPQKRHHRVSDLIVDYRIGDVEEHRALSDAIQEQMIYRALCREAS 176


>gi|260364890|ref|ZP_05777461.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|260879709|ref|ZP_05892064.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260898816|ref|ZP_05907257.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308086617|gb|EFO36312.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308093346|gb|EFO43041.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308111638|gb|EFO49178.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
          Length = 239

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+ +   II IG V                + P  +K   +++ +HGIT 
Sbjct: 49  FVALDFETTGLNPEKHDIITIGLVPFNLRRIFLRDARHWKVRPQ-KKLDEDSVIIHGITH 107

Query: 68  EFLKDKP 74
             L D P
Sbjct: 108 SELIDAP 114


>gi|289209028|ref|YP_003461094.1| exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
          K90mix]
 gi|288944659|gb|ADC72358.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
          K90mix]
          Length = 246

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          R +  D+ETTGLD ++D I+ IG V +      
Sbjct: 55 RFLAVDLETTGLDPEHDAILSIGWVAMDGVRID 87


>gi|46198514|ref|YP_004181.1| hypothetical protein TTC0206 [Thermus thermophilus HB27]
 gi|55980543|ref|YP_143840.1| DNA polymerase III subunit epsilon [Thermus thermophilus HB8]
 gi|46196136|gb|AAS80554.1| hypothetical conserved protein [Thermus thermophilus HB27]
 gi|55771956|dbj|BAD70397.1| probable DNA polymerase III epsilon subunit [Thermus thermophilus
           HB8]
          Length = 247

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           +V D+ETTGL    D +IE+G + L    +    FQ  + P+   +  
Sbjct: 74  VVLDLETTGLAPGLDEVIEVGLLRLEGGRRL--PFQSLVRPSRPPSPF 119


>gi|315127531|ref|YP_004069534.1| DNA polymerase, exonuclease activity [Pseudoalteromonas sp. SM9913]
 gi|315016045|gb|ADT69383.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas
           sp. SM9913]
          Length = 207

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 54/183 (29%), Gaps = 4/183 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    K R +V D+E TGLD K   I+ +  V + +    N   Q  +    +      +
Sbjct: 17  MQSALKQRYLVIDLELTGLDPKQHEIVSVAWVLIDNECIKNSLSQHLVNKEVKSLEQSPV 76

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLD 119
                TD   + +   S          +  +   + HNA  D GF+   L+         
Sbjct: 77  FHGISTDSVAQGQ---SLQSIITSLSAHFSDCILVFHNAMLDWGFLKLALKNAGITQRPK 133

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                  +   R    SS   L+ L             +               ++    
Sbjct: 134 LIIDTLQIEKKRLLKHSSDIKLDDLTLNECRKRYDLPSYHCHHALTDAQATAELLLAQCH 193

Query: 180 QIN 182
           QI+
Sbjct: 194 QIS 196


>gi|226311041|ref|YP_002770935.1| hypothetical protein BBR47_14540 [Brevibacillus brevis NBRC
          100599]
 gi|226093989|dbj|BAH42431.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 113

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 8/95 (8%)

Query: 7  MRKIVFDIETTGLDSKNDR-----IIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEAL 60
          M  I+FD+E T    +NDR     IIEIGAV+L +       FQ F+ P      S    
Sbjct: 1  MNYIIFDLEAT--CWENDRTKQNEIIEIGAVKLNENLAVIGEFQTFIKPKLNPILSDFCK 58

Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI 95
          KL  I+ + +   PSF    S F ++   +     
Sbjct: 59 KLTSISQKEVDQAPSFGEAISHFQNWIGSEYHLCS 93


>gi|210135714|ref|YP_002302153.1| DNA polymerase III subunit epsilon [Helicobacter pylori P12]
 gi|210133682|gb|ACJ08673.1| DNA polymerase III epsilon subunit [Helicobacter pylori P12]
          Length = 323

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 111 FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 167

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 168 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 213


>gi|71667552|ref|XP_820724.1| exonuclease [Trypanosoma cruzi strain CL Brener]
 gi|70886080|gb|EAN98873.1| exonuclease, putative [Trypanosoma cruzi]
          Length = 223

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-------NRTFQVFLCPNGRKNSPEA 59
          M  I  D+ETTG  ++ D ++ IGAVEL     T        R+F   + P+   +    
Sbjct: 1  MSAICVDLETTGFSAQRDDVVSIGAVELRWDGTTLQQWVLGARSFFRTVRPSKPSSHQAE 60

Query: 60 LKLHGITDEFLKDKP 74
                 +      P
Sbjct: 61 AVHGLSFEMLRDAPP 75


>gi|282877400|ref|ZP_06286223.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           buccalis ATCC 35310]
 gi|281300452|gb|EFA92798.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           buccalis ATCC 35310]
          Length = 194

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 5/167 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   +S    +  +G V + +   T  ++   + P      P  + +HGI   
Sbjct: 33  FAAIDFET--ANSCRSSVCSVGVVIVENGKIT-DSYYHLIRPYPNYYHPRNIAVHGILPS 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +D P+F  ++++       ++   +AHN  FD   + A         L+       ++
Sbjct: 90  DTQDAPTFPEVWAQIAPLI--KHLPLVAHNKAFDESCLKACFATYGMAYLNYPFYCTLIA 147

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R        +         +  +  + H AL D+   S + + ++
Sbjct: 148 SRRVFCHHELANHQLHTVAAHLGYNLVNHHHALADAEACSVIALNIL 194


>gi|227541474|ref|ZP_03971523.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182756|gb|EEI63728.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 427

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 6/174 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ET   +  +    +I  V++      +R F   L P    +  E   LHGI+ 
Sbjct: 253 KFVAVDFET--ANRSSRSACQIAMVKVEYGQIVDR-FSTLLKPPPGHDEFEFTYLHGISA 309

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D PS+  +      F         AHNA FD G   +         L         
Sbjct: 310 RDVADAPSWKFVEPYIRAFV--DRLPVYAHNASFDRGVWVSMDSYYGTRTLPEEFYCSYR 367

Query: 128 SIARRKHPSSRNDLNSLCKRYG-ITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  R         L ++ K           +  +  ++  L  + ++M+   S+
Sbjct: 368 TAKRLIPGLENYKLPTVTKAIAPWFRLDHHRADSDAEACALIVIGLQMLENYSE 421


>gi|325281116|ref|YP_004253658.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
 gi|324312925|gb|ADY33478.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
          Length = 163

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 7/168 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
                D ET   +++   +  IG V +        TF   + P     +    ++HG+  
Sbjct: 3   NFAAIDFET--ANNERSSVCSIGIVIVRGEEIV-DTFYSLIKPEPEYYNYWCSQVHGLCS 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
               D P F  ++ +            +AHN  FD   + A  +    D  D        
Sbjct: 60  NDTTDAPIFPEVWKQIEPLIKG--LPLVAHNKPFDESCLKAVFRVYQMDYPDYEFYDTLC 117

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +  +       + L+++    G      + H AL D+   + +  +++
Sbjct: 118 ASRQAFPELENHQLHTVAATCG--YQLENHHHALADAEACAWIAREIL 163


>gi|121607002|ref|YP_984331.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
 gi|120595971|gb|ABM39410.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
          Length = 203

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+     DR  E+  V L      +R FQ  +   G +      +L GIT+  
Sbjct: 6   VIDFETTGISPGCGDRATEVAIVLLEGGRVVDR-FQSLMN-AGVRIPSFITQLTGITNAM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           +   P  + + ++   F  +  A  +AHNA FD  F  
Sbjct: 64  VAGAPDAAQVMTQASRFVGD--APLVAHNAAFDRKFWQ 99


>gi|119775228|ref|YP_927968.1| ribonuclease T [Shewanella amazonensis SB2B]
 gi|119767728|gb|ABM00299.1| RNAse T [Shewanella amazonensis SB2B]
          Length = 258

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 14/209 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI    L    +     ++T    + P  G    P AL  +G
Sbjct: 40  VVIDVETAGFNAQTDALLEIAVTLLTMDDNGMLALDKTLHFHIEPFEGANLEPAALAFNG 99

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +     +   A  +AHNA FD GF+   + R    
Sbjct: 100 IDPSNPLRGAVSEKEAMLEIFKAVRKGMKAADCHRAVIVAHNAAFDHGFVTKAIDRSGVK 159

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L   CK  GI   ++  H AL D+   ++++  ++ 
Sbjct: 160 RSPFHPFATFDTACLSGLALGHTVLAQACKIAGIPFDNKEAHSALYDTERTAELFCYIVN 219

Query: 177 GGSQI-NFGFKTNEDRFFKEEKKTVPNIS 204
               +  +     E     E       I 
Sbjct: 220 RWKSLGGWPLLGAEALDDAENTAADKEID 248


>gi|70726458|ref|YP_253372.1| ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435]
 gi|123660231|sp|Q4L6F9|DING_STAHJ RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|68447182|dbj|BAE04766.1| probable ATP-dependent DNA helicase [Staphylococcus haemolyticus
           JCSC1435]
          Length = 900

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 4/109 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +   +  T+   +        P    L  I D 
Sbjct: 6   YAVVDLETTGNQLDYDEIIQIGITFVSNNKISG-TYHSMIR-TDLDIPPFIQALTSIEDT 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            L+  P F  I  E +    +    ++AHN  FD+ FI    Q  N D 
Sbjct: 64  MLEQAPYFHEIAQEIYKQLKD--RVFVAHNVDFDLNFIKKAFQNCNIDF 110


>gi|296160037|ref|ZP_06842857.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
 gi|295889783|gb|EFG69581.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
          Length = 383

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 5/102 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  +   RI E+G VE+     +   +   + P  +       +L GIT+  
Sbjct: 16  VFVDLETTGGSTAEHRITEVGVVEVGPAGVS--RWSSLVDPQ-QPIPSFIQQLTGITNAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           ++  P+F +I    ++  N     ++AHNA FD GF+  E +
Sbjct: 73  VRGAPTFEAIAPALFERLNG--KLFVAHNASFDRGFLRGEFR 112


>gi|169347300|ref|ZP_02866238.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552]
 gi|169293917|gb|EDS76050.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552]
          Length = 261

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 7/165 (4%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + +V D ETTG++   ND ++++  V   D    N        P    + P A +++GI+
Sbjct: 4   KYVVLDFETTGVNRYHNDEVVQVAIVNQDDEVLINE----LCKPKHHFSWPSAQRINGIS 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +KDK  F S      +   + +   + +N  F+ G +      I+K           
Sbjct: 60  PLMVKDKLCFESYIDRIIE-IFDNSEFIVCYNIAFEQGMLKNYGIDISKYVFKDPMKDFA 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                R +        SL         + + H AL D       +
Sbjct: 119 YIYGERGY-HGGYKWQSLSTCAKYFGYNFAAHDALEDVKATRYCF 162


>gi|91784877|ref|YP_560083.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
 gi|91688831|gb|ABE32031.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
          Length = 395

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 5/102 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  +   RI E+G VE+     +   +   + P  +       +L GIT+  
Sbjct: 28  VFVDLETTGGSTAEHRITEVGVVEVGPAGVS--RWSSLVDPQ-QPIPSFIQQLTGITNAM 84

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           ++  P+F +I    ++  N     ++AHNA FD GF+  E +
Sbjct: 85  VRGAPTFEAIAPALFERLNG--KLFVAHNASFDRGFLRGEFR 124


>gi|33596994|ref|NP_884637.1| putative exonuclease [Bordetella parapertussis 12822]
 gi|33566445|emb|CAE37698.1| putative exonuclease [Bordetella parapertussis]
          Length = 247

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
            +V D+ETTGL      I+E  AV +    +  R F   +  +GR    
Sbjct: 80  FVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVRTDGRVPPF 128


>gi|33600836|ref|NP_888396.1| putative exonuclease [Bordetella bronchiseptica RB50]
 gi|33568436|emb|CAE32348.1| putative exonuclease [Bordetella bronchiseptica RB50]
          Length = 247

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
            +V D+ETTGL      I+E  AV +    +  R F   +  +GR    
Sbjct: 80  FVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVRTDGRVPPF 128


>gi|28898677|ref|NP_798282.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28806895|dbj|BAC60166.1| putative DNA polymerase III, epsilon subunit [Vibrio
           parahaemolyticus RIMD 2210633]
          Length = 243

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+ +   II IG V                + P  +K   +++ +HGIT 
Sbjct: 53  FVALDFETTGLNPEKHDIITIGLVPFNLRRIFLRDARHWKVRPQ-KKLDEDSVIIHGITH 111

Query: 68  EFLKDKP 74
             L D P
Sbjct: 112 SELIDAP 118


>gi|323492356|ref|ZP_08097509.1| ribonuclease T [Vibrio brasiliensis LMG 20546]
 gi|323313403|gb|EGA66514.1| ribonuclease T [Vibrio brasiliensis LMG 20546]
          Length = 219

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L    +       T    + P  G     EAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLKMDENGDLVPASTIHFHVEPFEGANLEKEALDFNG 79

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                  +  +     +   A  +AHNA FD  F+    +R   
Sbjct: 80  IRDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIMVAHNANFDHSFVMEASERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   ++  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKTAGMEFDNKEAHSALYDTQKTAELFCGIV 199

Query: 176 VGGSQIN 182
                + 
Sbjct: 200 NKWKALG 206


>gi|300361735|ref|ZP_07057912.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
          gasseri JV-V03]
 gi|300354354|gb|EFJ70225.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
          gasseri JV-V03]
          Length = 937

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 3/92 (3%)

Query: 9  KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            V D+ETTG   ++ D II+ G   +       +T+   + P+ R+       L  I++
Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKKRKVV-KTYSFLINPH-REIPQAVENLTHISN 67

Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
            +     F     +               N 
Sbjct: 68 RDVAQARDFKYYAPKIRKILENTIFVAHNVNF 99


>gi|104784044|ref|YP_610542.1| exonuclease [Pseudomonas entomophila L48]
 gi|95113031|emb|CAK17759.1| putative exonuclease [Pseudomonas entomophila L48]
          Length = 236

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCP 50
          R +V D+ET+GL+   D+++ IGAV + D +    R F+     P
Sbjct: 40 RWVVLDLETSGLNLNRDQVLSIGAVAIEDGAIDLGRPFERTLHRP 84


>gi|91227218|ref|ZP_01261677.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|91188746|gb|EAS75034.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
          Length = 239

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+ +   II IG V           +    + P  R    +++ +HGIT 
Sbjct: 49  FVALDFETTGLNPEKHDIITIGLVPFNLKRIFLRNSRHWKVRPQ-RALDEDSVIIHGITH 107

Query: 68  EFLKDKP 74
             L D P
Sbjct: 108 SELIDAP 114


>gi|85713236|ref|ZP_01044262.1| RNase T, degrades tRNA [Idiomarina baltica OS145]
 gi|85692931|gb|EAQ30903.1| RNase T, degrades tRNA [Idiomarina baltica OS145]
          Length = 222

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 70/187 (37%), Gaps = 15/187 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-----RTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G ++  D ++EI AV +L++ +        + Q  + P  G      A++ +
Sbjct: 31  VVIDVETAGFNASTDALLEIAAV-ILNFDEHGQLKPVESHQFHVEPFEGANIEQAAIEFN 89

Query: 64  GITDE--------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           GI             +   +      +       Q +  + HN+ FD  F+    +R N 
Sbjct: 90  GIDPHSELRGALPEDEVLKALFKPIRKAQKAAGCQRSVLVGHNSNFDHSFLMRAAERANI 149

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   +   + +       +  L   CK  GI    +  H AL D+   ++++  M+
Sbjct: 150 KRNPFHPFVSFDTTSLAALTLGQTVLIKACKAAGIEFDQKQAHSALYDTEKTAELFCWMV 209

Query: 176 VGGSQIN 182
                + 
Sbjct: 210 NKWKALG 216


>gi|328474758|gb|EGF45563.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
          Length = 239

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+ +   II IG V                + P  +K   +++ +HGIT 
Sbjct: 49  FVALDFETTGLNPEKHDIITIGLVPFNLRRIFLRDARHWKVRPQ-KKLDEDSVIIHGITH 107

Query: 68  EFLKDKP 74
             L D P
Sbjct: 108 SELIDAP 114


>gi|328468890|gb|EGF39850.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
          Length = 248

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 71/192 (36%), Gaps = 17/192 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL++++D I+ IG V   +D  + + +    + PN R+ + E++ +HGITD
Sbjct: 58  FVSVDFETTGLNAEDDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITD 116

Query: 68  EFLKDKPSFSSIFSE------------FWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             +K+ P  + I  E             +     Q       N   +            +
Sbjct: 117 SEVKNAPQLTQILGEILDALAGKVVLVHYKNIERQFFYNALLNTIGEGIQFPVVDTLDIE 176

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             L         +  + K P S    ++  +     +     H AL D+   ++++   +
Sbjct: 177 YALQRRECSGIWNKLKGKKPGSVRLGHARERYG---LPAYQPHHALTDALATAELFQAQL 233

Query: 176 VGGSQINFGFKT 187
                 +    +
Sbjct: 234 QYHFNRDMPISS 245


>gi|288802870|ref|ZP_06408307.1| exonuclease [Prevotella melaninogenica D18]
 gi|288334687|gb|EFC73125.1| exonuclease [Prevotella melaninogenica D18]
          Length = 163

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 7/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   +  +G V +        +F   + P          ++HG+T  
Sbjct: 4   FAAIDFET--ANFERCSVCSVGLVIVRGGEIV-DSFYSLIQPEPNYYHWRCTQVHGLTCA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P F  I+ +            +AHNA FD   + A       D  D   +    +
Sbjct: 61  DTDGAPVFCEIWKQIEPMIEG--LPLVAHNASFDKSCLKASFYTYQMDYPDYEFLDTLKA 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R       + L+++    G        H AL D+   + +  +++
Sbjct: 119 ARRHFPHLPDHQLHTVSSACGYE--LTDHHHALADAEACAWIAREIL 163


>gi|315650299|ref|ZP_07903371.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487410|gb|EFU77720.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 236

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 58/179 (32%), Gaps = 6/179 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELL--DYSKTNRTFQVFLCPNGRKNSPE 58
           I +   + I FD ETTG   +  D+IIE+ A+ +      +    F              
Sbjct: 5   IFEKYNQIIFFDTETTGFHPERLDQIIELAAISIDKTGRQQEMDEFIKLFRVQELPQQIT 64

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI---NAELQRINK 115
            L          + K  F+ +               IAHNA+FD+ F+       +    
Sbjct: 65  ELTGISSDTLSAQGKDEFAVLNKFIDMIQGNGKTLLIAHNAQFDLKFMAYAIHRNKNKEW 124

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +             +      + L S   +Y +    ++ H A+ D   L +V   M
Sbjct: 125 MQVFNDCDYLDTLTVYKDRRQYPHRLESAIVQYHLINKVKNSHRAIDDCRALIEVTRCM 183


>gi|255689883|ref|ZP_05413558.1| exonuclease [Bacteroides finegoldii DSM 17565]
 gi|260624488|gb|EEX47359.1| exonuclease [Bacteroides finegoldii DSM 17565]
          Length = 183

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 66/182 (36%), Gaps = 9/182 (4%)

Query: 8   RKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
             I  D ET TG   K   I E G   + D      T    + P G   S   +++HGI 
Sbjct: 5   NFIAIDFETATG---KRASICEAGICVVRDGKIV-ETRSWLVRPQGNSYSYWNMQIHGIR 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                D P F  +++E   +  +     +AHNA FD+G I   L+    + L+ +     
Sbjct: 61  PNDTADSPEFPEVWTEISKYLKD-IPVLVAHNAAFDIGCIRHSLELYGMEKLEITYYCSL 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            +  +       +            I +   H A  D+ + + +++K +       +   
Sbjct: 120 RAARKLYSFGCNSLD---YLCDQFRIPYGQHHRAGDDAEMCARLFLKELEDAGWCGWEEM 176

Query: 187 TN 188
            N
Sbjct: 177 GN 178


>gi|308125815|ref|ZP_05777630.2| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|308111533|gb|EFO49073.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
          Length = 247

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 69/180 (38%), Gaps = 17/180 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL++++D I+ IG V   +D  + + +    + PN R+ + E++ +HGITD
Sbjct: 57  FVSVDFETTGLNAEDDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITD 115

Query: 68  EFLKDKPSFSSIFSE------------FWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             +K+ P  + I  E             +     Q       N   +            +
Sbjct: 116 SEVKNAPQLTQILGEILDALAGKVVLVHYKNIERQFFYNALLNTIGEGIQFPVVDTLDIE 175

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             L         +  + K P S    ++  +     +     H AL D+   ++++   +
Sbjct: 176 YALQRRECSGIWNKLKGKKPGSVRLGHARERYG---LPAYQPHHALTDALATAELFQAQL 232


>gi|269967099|ref|ZP_06181167.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
 gi|269828358|gb|EEZ82624.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
          Length = 239

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+ +   II IG V           +    + P  R    +++ +HGIT 
Sbjct: 49  FVALDFETTGLNPEKHDIITIGLVPFNLKRIFLRNSRHWKVRPQ-RALDEDSVIIHGITH 107

Query: 68  EFLKDKP 74
             L D P
Sbjct: 108 SELIDAP 114


>gi|255615473|ref|XP_002539676.1| DNA polymerase III epsilon subunit, putative [Ricinus communis]
 gi|223503630|gb|EEF22707.1| DNA polymerase III epsilon subunit, putative [Ricinus communis]
          Length = 205

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 78/212 (36%), Gaps = 19/212 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR------TFQVFLCPNGRKNSPEALK 61
           R ++ D ETTG D   D++IE+G V      +T        TF     P G    PE+ K
Sbjct: 3   RAVILDTETTGTDYVQDKVIELGMVAFDYCPQTGMIGDVHGTFNQLEDP-GFPIPPESTK 61

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H ITDE +  K    SI  E  + F +  +  IAHN++FD  F+          P    
Sbjct: 62  VHHITDEMVAGK----SINDEEVEAFIKPASIIIAHNSRFDRRFVEPRWPIFQSKPW--- 114

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                 + A+    +     + L      +  H   H A  D H L +V           
Sbjct: 115 ----ACTFAQIDWDAEGLGSSKLEFLAYRSGFHYEGHRASTDCHALLEVLHCATTESGVS 170

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
               +  ++   KE K +  N     +D    
Sbjct: 171 PMK-QMLDNARQKEYKVSALNAPFDSKDLLKL 201


>gi|260901010|ref|ZP_05909405.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308110780|gb|EFO48320.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
          Length = 248

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 68/180 (37%), Gaps = 17/180 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+++ D I+ IG V   +D  + + +    + PN R+ + E++ +HGITD
Sbjct: 58  FVSVDFETTGLNAEEDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITD 116

Query: 68  EFLKDKPSFSSIFSE------------FWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             +K+ P  + I  E             +     Q       N   +            +
Sbjct: 117 SEVKNAPQLTQILGEILDALAGKVVLVHYKNIERQFFYNALLNTIGEGIQFPVVDTLDIE 176

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             L         +  + K P S    ++  +     +     H AL D+   ++++   +
Sbjct: 177 YALQRRECSGIWNKLKGKKPGSVRLGHARERYG---LPAYQPHHALTDALATAELFQAQL 233


>gi|312963467|ref|ZP_07777949.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
 gi|311282273|gb|EFQ60872.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
          Length = 235

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 63/199 (31%), Gaps = 4/199 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+ET+GL+   D+++ IGAV + D +     F        ++   +      I  
Sbjct: 40  RWVVVDLETSGLNLNRDQVLSIGAVVIEDGAVD---FSQLFERTLQRTDTKLSPSVLIHG 96

Query: 68  EFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                  + S       DF     ++  +A +A FD   +   L+      L    +   
Sbjct: 97  LGPSAIAAGSDPVEALLDFMEFVGDSPLLAFHAPFDQHMLGRALKDSLGYRLAHPFLDVA 156

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                    +   +           +    +H A  D+   +++ + +     Q +    
Sbjct: 157 DIAPLLCPEAHIREAGLDDWINHFKLQVGERHHASADALATAELMLILFSRARQQHIDTP 216

Query: 187 TNEDRFFKEEKKTVPNISL 205
                   + K+     S 
Sbjct: 217 HALQTRLSQWKRRKQAPSF 235


>gi|163751265|ref|ZP_02158493.1| ribonuclease T [Shewanella benthica KT99]
 gi|161328979|gb|EDQ00053.1| ribonuclease T [Shewanella benthica KT99]
          Length = 225

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIG--AVELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++EI    +++ D      ++T    + P  G    P+AL  +G
Sbjct: 20  VVIDVETAGFNCQTDALLEIAVTMLKMDDEGILSLDKTLHYHIEPFEGANLEPDALAFNG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +         +  +AHNA FD GF++  ++R    
Sbjct: 80  IDPTNPLRGAVSEKEAFLEIFKEVKKAQKAVGCHRSIIVAHNAAFDHGFVSKAIERCALK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A          L   C   GI   +   H AL D+   ++++  ++ 
Sbjct: 140 RTPFHPFATFDTAALSGLALGHTVLAKACSIAGIDFDNSEAHSALYDTERTAELFCHIVN 199

Query: 177 GGSQIN 182
               + 
Sbjct: 200 KWKTLG 205


>gi|71734762|ref|YP_276473.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555315|gb|AAZ34526.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 204

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 3/168 (1%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V +         FQ  +   G +       L GI+
Sbjct: 4   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIV-ELFQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF           +             +   +      ++  
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGATPLVAHNASFDQKFWDYELSRIQRKLEQSFACSMLLA 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +           L S  +      +HR+   A + ++L + +  ++
Sbjct: 122 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 169


>gi|324995504|gb|EGC27416.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK678]
          Length = 814

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V + +   T +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++   +  A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLSQAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAESLFWEGFDLLTPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                L+         +  L +LC      IS  + H AL D+   + +++K+      +
Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172

Query: 182 NFGF 185
               
Sbjct: 173 PKAL 176


>gi|323344490|ref|ZP_08084715.1| DNA polymerase III, epsilon subunit [Prevotella oralis ATCC 33269]
 gi|323094617|gb|EFZ37193.1| DNA polymerase III, epsilon subunit [Prevotella oralis ATCC 33269]
          Length = 899

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 8   RKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGI 65
           R+IV FD ETTGL    D I++I AV +          F+VF+    R+   +   +   
Sbjct: 516 REIVIFDTETTGLSVFEDDILQIAAVTICRGEVVRGSEFKVFIATE-REIPRKLGDIDNP 574

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             E +K         +         +   + HNA +D   ++  L+R 
Sbjct: 575 IIEEMKHNRLLGHAEALQLFMNYVGDRTLLGHNADYDYHILDYNLRRY 622


>gi|322372929|ref|ZP_08047465.1| putative CRISPR-associated protein Cas2 [Streptococcus sp. C150]
 gi|321277971|gb|EFX55040.1| putative CRISPR-associated protein Cas2 [Streptococcus sp. C150]
          Length = 301

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53
            +V DIET GLD K + IIEIGAV+          F   +    +
Sbjct: 131 YVVIDIETDGLDEKKNTIIEIGAVKFNGQQV--EEFNSLIKYEEK 173


>gi|224372263|ref|YP_002606635.1| exonuclease [Nautilia profundicola AmH]
 gi|223589603|gb|ACM93339.1| exonuclease [Nautilia profundicola AmH]
          Length = 293

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ ++ D ETTG + + DRII++  + L +  +        + P    +       H   
Sbjct: 1   MKIVILDTETTG-NKEEDRIIQLSYLVLNENLEIEEIHDELVKPPLPISFEAMAVHHITN 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +          +   +     N      + HNAKFD+  +  E        +D  R++  
Sbjct: 60  EMVEDKPLIKHTESYKRLKELNSPENLLVIHNAKFDLDMLKKEGFNSFFKLIDTFRVLKH 119

Query: 127 LSIARRKHPSSRND-------LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L    +                  +C++Y I I+     G ++   LL +  +
Sbjct: 120 LIPEGKFSLQYNRYALGLYKKEKDICEKYNIQINAHDALGDVIVLGLLFEYLV 172


>gi|207092434|ref|ZP_03240221.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 160

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
             D+ETTG       I+EIGAV++      NR F+  + 
Sbjct: 75  FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK 112


>gi|167035772|ref|YP_001671003.1| DNA polymerase IIIsubunit epsilon [Pseudomonas putida GB-1]
 gi|166862260|gb|ABZ00668.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1]
          Length = 201

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 7/174 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  E+  V L       R +Q  +   G         L GIT
Sbjct: 3   RIAVIDFETTGVSPGAGCRATEVAVVMLEGGRIVER-YQSLMN-AGVPVPAFVAGLTGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+  P    + +E  +F        +AHNA FD  F + EL RI +          +
Sbjct: 61  TAMLRTAPPVDKVMNEVAEFVGG--TPLLAHNAAFDQKFWDYELSRIGRS--RSQPFACS 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           L ++RR  P++ N       R+       + H A+ D+ + +++   +     Q
Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMADAEMAANLLQHLTGVLRQ 170


>gi|88812259|ref|ZP_01127510.1| putative DNA polymerase III epsilon chain [Nitrococcus mobilis
          Nb-231]
 gi|88790510|gb|EAR21626.1| putative DNA polymerase III epsilon chain [Nitrococcus mobilis
          Nb-231]
          Length = 186

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 18 GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
          G D    R++EIG VE+ D   T R+F  +  P GR     AL+  G++ E L DKP F 
Sbjct: 13 GDDPTTSRVVEIGCVEMHDDHPTGRSFHSYANP-GRDLDVAALQAKGLSTEALADKPRFG 71

Query: 78 SIFSEFWDFFNE 89
           I         +
Sbjct: 72 DIAYGLICVIRD 83


>gi|167464941|ref|ZP_02330030.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
          subsp. larvae BRL-230010]
          Length = 89

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 7  MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
          MR+I  VFD+ETTGLD   D+I EI A+      +  R
Sbjct: 1  MREIYTVFDLETTGLDPTKDQITEITAIRTDLIREYGR 38


>gi|15645997|ref|NP_208178.1| DNA polymerase III subunit epsilon [Helicobacter pylori 26695]
 gi|2314554|gb|AAD08426.1| DNA polymerase III epsilon subunit (dnaQ) [Helicobacter pylori
           26695]
          Length = 350

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 111 FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + PS      E        N+ ++AHNA FD  F+          PL
Sbjct: 168 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 213


>gi|330836252|ref|YP_004410893.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM
           17374]
 gi|329748155|gb|AEC01511.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM
           17374]
          Length = 231

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 80/217 (36%), Gaps = 11/217 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   +  ++    +G   +    K   T+   + P      P  +++HGIT
Sbjct: 24  MEFVALDFET--ANGTHESACSLGLALMDGTGKLIDTWYQLIKPPSSFFDPANIEIHGIT 81

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E + D PSF  ++S   +F  +     IAHNA FD+  + A L     +          
Sbjct: 82  PENVADAPSFDKVWSAAREFIAD--RLVIAHNATFDMTILKAMLHWYKMEIPRIGYACTL 139

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
               +     +   L +L + +G        H AL D+   + ++ K        +   +
Sbjct: 140 RLSRKVWPEMNNYKLTTLSEVFGFDYRA---HYALDDAVNCAKLFYKECGS----SLSSR 192

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
              +RF +     + ++   +    +    +  ELD 
Sbjct: 193 DALERFLERNGLPILDLDTGEPFAKVVVDDSDGELDL 229


>gi|146279555|ref|YP_001169713.1| transposase [Rhodobacter sphaeroides ATCC 17025]
 gi|145557796|gb|ABP72408.1| Transposase and inactivated derivatives-like protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 282

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 5/179 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +V D+ET   + +   I +IG V      +        + P      P  + +HGIT
Sbjct: 1   MKFVVLDVET--ANPRMSSICQIGLVTFEGGVEVAAESH-LIDPEDH-FDPVNVAIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +  +P+F  ++    D            +          EL  +             
Sbjct: 57  AAAVVGEPTFREVYGRVCD-LTAGTVVACHTHFDRVALSRVCELHALPTLSCSWLDTARV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
              A  +   S   L++L + +GIT  H         + L+    I+            
Sbjct: 116 ARRAWVEFSKSGYGLSNLARHFGITFQHHDALHDARAAGLILARAIEETGHDPSEWIRL 174


>gi|212702995|ref|ZP_03311123.1| hypothetical protein DESPIG_01033 [Desulfovibrio piger ATCC 29098]
 gi|212673583|gb|EEB34066.1| hypothetical protein DESPIG_01033 [Desulfovibrio piger ATCC 29098]
          Length = 173

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 10/167 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D ET+G          +G   + D + T  +F   + P   +       +HG+T 
Sbjct: 5   RYVALDFETSG--YAAHSACAVGLCRIEDGAVT-DSFYSLIRPPSSRV--LFTHVHGLTW 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             LKD P+F+ ++ +   F  E +   +AHNA FD   ++A  Q +          + TL
Sbjct: 60  PLLKDAPTFTEVWPQLAAF-MEGSRAILAHNAGFDRRVLHASCQALGLVQP-QLPFLCTL 117

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             ARR  P +   L+S+C  +G        H A  D+   +++Y+++
Sbjct: 118 KGARRSLPLASRALDSVCDYFG---IPLDHHHAGSDARACAEIYLRL 161


>gi|303229201|ref|ZP_07316002.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-134-V-Col7a]
 gi|303230531|ref|ZP_07317286.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514814|gb|EFL56801.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302516214|gb|EFL58155.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 209

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 7/175 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +   +    +  + + +   T + +   + P      PE +++HGI  +
Sbjct: 4   FVALDFET--ANKYKNSACSLAVITVENGQITKKAY-SLIKPPFMSFDPECIEIHGIEPK 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  + +F  ++   ++  + +    IAHNAKFD+  + A L   N    +         
Sbjct: 61  EVLHEKTFDQLWPAIYEN-HLKGKIMIAHNAKFDMNVLRATLDYYNIPWPELDYACTVKI 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                     + LN++    G+       H AL D+   + V I+        + 
Sbjct: 120 SRAVWPDLVNHKLNTMAAYLGVEF---KHHYALDDAETCAKVAIEAARLKGANSL 171


>gi|145589827|ref|YP_001156424.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048233|gb|ABP34860.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 466

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             DIETTG     DRI EIG   L +     + ++  + P          +L GI+ + +
Sbjct: 13  FVDIETTGSHFDRDRITEIGIKTLANDGI--QVWERLINPQT-FIPQNIQRLTGISPQMV 69

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           + +PSF  +  E           ++AHNA+FD GFI A  +
Sbjct: 70  EGQPSFDQVAKELKQELEG--KIFVAHNARFDYGFIKASFK 108


>gi|329667338|gb|AEB93286.1| ATP dependent helicase [Lactobacillus johnsonii DPC 6026]
          Length = 938

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 9  KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            V D+ETTG   ++ D II+ G   +       +T+   + P+ R+       L  I++
Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKKRKVV-KTYSFLINPH-REIPQAVENLTHISN 67

Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
          E +     FS    +               N 
Sbjct: 68 EDVAQAHDFSYYAPKIRKILENTIFVAHNVNF 99


>gi|311745409|ref|ZP_07719194.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1]
 gi|126577956|gb|EAZ82176.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1]
          Length = 223

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSK---TNRTFQ 45
           +V D ETTGL+   D I+  GAV++ D      T   + 
Sbjct: 39 FVVLDTETTGLNPSVDHILSFGAVKIEDQMIQISTGVEWY 78


>gi|42519127|ref|NP_965057.1| hypothetical protein LJ1202 [Lactobacillus johnsonii NCC 533]
 gi|41583414|gb|AAS09023.1| hypothetical protein LJ_1202 [Lactobacillus johnsonii NCC 533]
          Length = 938

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 9  KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            V D+ETTG   ++ D II+ G   +       +T+   + P+ R+       L  I++
Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKKRKVV-KTYSFLINPH-REIPQAVENLTHISN 67

Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
          E +     FS    +               N 
Sbjct: 68 EDVAQAHDFSYYAPKIRKILENTIFVAHNVNF 99


>gi|89898728|ref|YP_515838.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56]
 gi|89332100|dbj|BAE81693.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56]
          Length = 249

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 4/179 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D E TGLD K DRIIE  A      +    + +  + P+ R  S E+ ++H I+D 
Sbjct: 9   FVCLDCEMTGLDVKKDRIIEFAAKRFTFDNVI-DSMETLINPD-RVISAESQRIHRISDA 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD+P  S +F +   F  E +   + H+  FD+  +  E +RI +  L    IIDTL 
Sbjct: 67  MLKDQPRISEVFPKIQAFLKEGDYI-VGHSVGFDLQVLTQEAERIGETFLSKYCIIDTLR 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL-LSDVYIKMMVGGSQINFGFK 186
           +A+    S  N L +L   + +      +    ++ ++ +   + K      Q+     
Sbjct: 126 LAKEYGDSPNNSLEALAVHFNVPYDGNHRAMKDVEININIFKHFCKRFRTIEQLKQVLS 184


>gi|310641105|ref|YP_003945863.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2]
 gi|309246055|gb|ADO55622.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2]
          Length = 177

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 8/129 (6%)

Query: 7   MRKIVFDIETTGLDSKNDR-----IIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEAL 60
           M  I+FD+E T    +NDR     IIEIGAV++    +    FQ F+ P      S    
Sbjct: 1   MNYIIFDLEAT--CWENDRTRQNEIIEIGAVKVNVNLEIIGEFQTFIKPKLNPQLSDFCK 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L  I+ + +     F     +F ++  ++     +                  +     
Sbjct: 59  SLTSISQQDIDMATYFPQAIYKFQEWIGKEPYYLCSWGFYDKSQLKKDCELHKIRTEWIR 118

Query: 121 SRIIDTLSI 129
           + I      
Sbjct: 119 NHISIKHQH 127


>gi|332882730|ref|ZP_08450341.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332679232|gb|EGJ52218.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 442

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 4/116 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI       +  T++ F   + P  R       KL GI ++
Sbjct: 2   YAILDIETTGGKYDEEGITEIAIYRFDGHELTDQ-FISLINPE-RPIQDFVTKLTGINNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            L++ P F  +     +    Q+   + HNA FD   +  E +R+  D +  +   
Sbjct: 60  MLRNAPKFYEVAKRIVE--ITQDTIIVGHNAAFDYRILQTEFRRLGYDYIRTTLCT 113


>gi|332359593|gb|EGJ37411.1| DNA polymerase III [Streptococcus sanguinis SK49]
          Length = 814

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V + +   T +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++   +  A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLNDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                L+         +  L +LC      IS  + H AL D+   + +++K+      +
Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172

Query: 182 NFGF 185
               
Sbjct: 173 PKAL 176


>gi|325694226|gb|EGD36142.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK150]
          Length = 814

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V + +   T +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++   +  A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLNDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                L+         +  L +LC      IS  + H AL D+   + +++K+      +
Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172

Query: 182 NFGF 185
               
Sbjct: 173 PKAL 176


>gi|302873810|ref|YP_003842443.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|307689948|ref|ZP_07632394.1| DNA polymerase III subunit epsilon [Clostridium cellulovorans 743B]
 gi|302576667|gb|ADL50679.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
          Length = 306

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 8/208 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K +    IG V + +     R     + P   +  P  + +HGI 
Sbjct: 1   MNFIAIDFET--ANEKRNSPCSIGIVVVKNGEVVERI-HHLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++++P F  ++++    FNE  +  IAHNA FD+  +    +  + +      I   
Sbjct: 58  PAMVENEPEFHEVWAKIKHHFNE--SLVIAHNASFDISVLRKSAELYDIELPSFKYICTM 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                         LN++    G        H AL D+   S++ + +       +    
Sbjct: 116 RLAKNFYRGIENAKLNTVNDFLG---YEFKHHDALYDALACSNILLNISEELRCKDIDEI 172

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFT 214
           +                      +P+  
Sbjct: 173 SKLIGVTIGAVDNDDYKPSKAEGRPIKI 200


>gi|254228134|ref|ZP_04921563.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp.
           Ex25]
 gi|262393911|ref|YP_003285765.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|151939207|gb|EDN58036.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp.
           Ex25]
 gi|262337505|gb|ACY51300.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
          Length = 239

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+ +   II IG V           +    + P  R    +++ +HGIT 
Sbjct: 49  FVALDFETTGLNPEKHDIITIGLVPFNLKRIFLRNSRHWKVRPQ-RALDEDSVIIHGITH 107

Query: 68  EFLKDKP 74
             L D P
Sbjct: 108 SELIDAP 114


>gi|294673890|ref|YP_003574506.1| exonuclease [Prevotella ruminicola 23]
 gi|294473761|gb|ADE83150.1| exonuclease [Prevotella ruminicola 23]
          Length = 163

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 67/170 (39%), Gaps = 8/170 (4%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+     D ET   +++   +  +G V + D      +F   + P     +    ++HG+
Sbjct: 1   MKDFAAIDFET--ANNERTSVCSVGVVIVRDGEIV-DSFYSLIQPEPNYYNYWCSQVHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T +  ++ P F  ++ +            +AHN  FD   + A  +    D  D      
Sbjct: 58  TRQDTEEAPIFPEVWKQIEPMIEG--LPLVAHNKAFDESCLKAVFRCYQMDYPDYQFYCT 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++  +    ++ + L+++ K  G      + H AL D+   + +  +++
Sbjct: 116 CVASRKAFPNAANHQLHTISKLCGYE--LENHHHALADAEACAWIAREIL 163


>gi|213692117|ref|YP_002322703.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium
          longum subsp. infantis ATCC 15697]
 gi|213523578|gb|ACJ52325.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium
          longum subsp. infantis ATCC 15697]
 gi|320458233|dbj|BAJ68854.1| hypothetical protein BLIJ_1267 [Bifidobacterium longum subsp.
          infantis ATCC 15697]
          Length = 185

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           D ETTGLD + D I+EIG +    D    +  F   +   G+ +               
Sbjct: 16 VDTETTGLDPRKDPILEIGMIATGPDLKPVDDGFHTTVHWEGKPSEFIQSMHGPNGLLAE 75

Query: 71 KDKP 74
             P
Sbjct: 76 CAHP 79


>gi|28898498|ref|NP_798103.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260879545|ref|ZP_05891900.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260894980|ref|ZP_05903476.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|28806716|dbj|BAC59987.1| putative DNA polymerase III, epsilon subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308086038|gb|EFO35733.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308093371|gb|EFO43066.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
          Length = 248

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 69/180 (38%), Gaps = 17/180 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL++++D I+ IG V   +D  + + +    + PN R+ + E++ +HGITD
Sbjct: 58  FVSVDFETTGLNAEDDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITD 116

Query: 68  EFLKDKPSFSSIFSE------------FWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             +K+ P  + I  E             +     Q       N   +            +
Sbjct: 117 SEVKNAPQLTQILGEILDALAGKVVLVHYKNIERQFFYNALLNTIGEGIQFPVVDTLDIE 176

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             L         +  + K P S    ++  +     +     H AL D+   ++++   +
Sbjct: 177 YALQRRECSGIWNKLKGKKPGSVRLGHARERYG---LPAYQPHHALTDALATAELFQAQL 233


>gi|330505332|ref|YP_004382201.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
 gi|328919618|gb|AEB60449.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina NK-01]
          Length = 233

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 67/193 (34%), Gaps = 6/193 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTGL+ + D+++ IGAV +   +      F+     P+ + ++   +     
Sbjct: 40  RLVVLDLETTGLNMRRDQVLAIGAVVIDHGAIDFAEQFECTLHQPDHQASASTLIHGIAP 99

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++      P+   +           ++  +A +A FD   +   L++     L  S    
Sbjct: 100 SEVARGVDPAEGLLDFME----FVGSSPLLAFHAGFDQRMLARALRQSLGYRLQHSFFDV 155

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +               +    +H A  D+ + +++ + +     +     
Sbjct: 156 AEIAPLLCPQARIRQGGLDDWVAEFGLQVHQRHNASADALVTAELALMLFSKARRQGIDS 215

Query: 186 KTNEDRFFKEEKK 198
               +R     ++
Sbjct: 216 LCELERQLASRRR 228


>gi|188588313|ref|YP_001920971.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498594|gb|ACD51730.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 309

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 64/178 (35%), Gaps = 8/178 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D           + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFET--ANEKRNSPCSIGIVVVKDGKIIEEV-HHLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  ++ +   +FNE     IAHNA FD+  +   L+  N +      I   
Sbjct: 58  PRMVQDELEFDKVWEKIKHYFNE--NLVIAHNASFDISVLRNTLELYNIEMPSFQYICTM 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                         LN++    G        H AL D+    ++ + +    +  +  
Sbjct: 116 KLSKNFYSNLDNARLNTVNNFLG---YEFKHHDALADAMACGNILLNICEELNTRDIN 170


>gi|328473671|gb|EGF44506.1| hypothetical protein VP10329_13450 [Vibrio parahaemolyticus 10329]
          Length = 254

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 59/189 (31%), Gaps = 21/189 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M + +    I+ D ETTGL S+   I+E  A+               + P       EA 
Sbjct: 48  MKKLSTQNAIILDTETTGLGSQ-AEIVEFTAICAHTGKVIVNE---LVKPTC-SIPAEAT 102

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI----------------AHNAKFDVG 104
            +HGITDE +KD P F  +FS  +          I                  NA +   
Sbjct: 103 AIHGITDEDVKDAPDFHLVFSNHFLPLLNGRPIIIYNSDFDTRLIIQSLDKHCNAAYVQS 162

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
             +   +                             L++ C +  + +S  + H AL D 
Sbjct: 163 VHDLFFKFCVPQCAMLWYAEFFGVWNEHHEDYKWQSLSNACAQQNVDVSDLTAHRALADC 222

Query: 165 HLLSDVYIK 173
            +   +   
Sbjct: 223 EMTRRLIHA 231


>gi|323497526|ref|ZP_08102544.1| putative exonuclease [Vibrio sinaloensis DSM 21326]
 gi|323317609|gb|EGA70602.1| putative exonuclease [Vibrio sinaloensis DSM 21326]
          Length = 238

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 4/168 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITD 67
            +V D+ETTGLD+++D I+ +G VE+ +      T    +L    +     A+  + IT 
Sbjct: 51  YLVLDLETTGLDAESDLILSMGWVEISNGVIDLSTAQHFYLSNESQIKPETAVI-NHITP 109

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L+D  S     +  ++    +     + + +          +               +
Sbjct: 110 QMLEDGISIHDAMNALFEVAQGKVLVAHSCSVENSFIQRYLSYRFQINAVPLMWLDTLCI 169

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYIK 173
                +  ++  DL+                 H AL+D+   +++ + 
Sbjct: 170 EKKLARAINNHQDLDVSLGATRERYQLPEYIEHNALMDAVATAELLLA 217


>gi|284040773|ref|YP_003390703.1| exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
           74]
 gi|283820066|gb|ADB41904.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
           74]
          Length = 270

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 6/229 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ETTG++   DRII+I  ++ L   +   T    + P G     E+  +HGI D+ +
Sbjct: 13  FFDLETTGINIAKDRIIDICIIKALPGGEVI-TKNQRVHP-GMPIPLESSLIHGIYDDDV 70

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D P F ++      F +  +      N       +   L+      +   R++D   I 
Sbjct: 71  QDAPPFKTVARTLAQFLDGCDLAGFNCNRFDVPLLVEEFLRANVDFDMKNRRLVDAQRIF 130

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
               P + +          +  +H ++   +    +L     + M   ++ + G     +
Sbjct: 131 HLMEPRNLSAAYKFYCNKDLVGAHGAEADTIATLEVLDAQVQRYMGMVAKSDSGADVVFE 190

Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEELD--EHD--KTIQTLGKNA 235
                      N ++    + +     +E  +  +H     ++ L K  
Sbjct: 191 NDVDMLHSLTANKNIDLAGRMVINEKGEEVFNFGKHKGAPVLEVLKKEP 239


>gi|163753129|ref|ZP_02160253.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1]
 gi|161326861|gb|EDP98186.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1]
          Length = 1460

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 71/230 (30%), Gaps = 19/230 (8%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R I+I      +           + P+G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPISDTDNWPRCIQIAWQLHDELGNLIEHQDYLVQPDGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP- 117
           A K+HGI+ E   ++        E ++    +    +  N  FDV  + AE  R N    
Sbjct: 62  AEKIHGISTELAAEQGISLQEVLEKFNIALSKTKFIVGQNVGFDVNIMGAEFYRENVANK 121

Query: 118 --------LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                              I   +    +    +   +Y   +     H A  D    + 
Sbjct: 122 LQELPVLDTCTEDTAQLCQIPGGRGGKFKLPTLTELHQYLFGVGFGEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +++++              D F +  +     I ++          +++
Sbjct: 182 CFLELIRRKEYTIEQLDVAPDYFERFSENNPQPIEMIGLKHINLKAASEK 231


>gi|149190815|ref|ZP_01869080.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
 gi|148835377|gb|EDL52349.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
          Length = 239

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N++  +  D ETTGL+   D I+ IG V       +  +     + P  +      +   
Sbjct: 45  NELEFVALDFETTGLNPDKDGILSIGLVPFNASRIRLKQAAHWTIRPKAKLEEESVVIHG 104

Query: 64  GITD 67
              +
Sbjct: 105 ITHN 108


>gi|319896653|ref|YP_004134846.1| ribonuclease t [Haemophilus influenzae F3031]
 gi|317432155|emb|CBY80506.1| ribonuclease T [Haemophilus influenzae F3031]
          Length = 229

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   +PE+LK +G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +        + Q +  +AHNA FD  F+ A  +R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + +       +  L   C    I    +  H AL D+   ++++  M+ 
Sbjct: 143 RNPFHPFGMFDTASLSGLMFGQTVLVKACLAAKIPFDGKQAHSALYDTERTAELFCYMVN 202

Query: 177 GGSQIN 182
               + 
Sbjct: 203 HLKDLG 208


>gi|313889930|ref|ZP_07823570.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121696|gb|EFR44795.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 820

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 10/181 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + +   +  V D+E T  ++ +D RII+IG V + +    +R FQ  + P+ +  S    
Sbjct: 1   MTEQLTKYAVIDLEAT--NAGSDARIIQIGIVIVENKKIIDR-FQTDINPHSK-LSEHIK 56

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS + S+ ++   +    ++AHN KFD   +   L     + L P
Sbjct: 57  SLTGITDQQLASAPEFSQVASQIFELIKD--CVFVAHNVKFDANLLAEALFFEGFELLTP 114

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                 L+     +    N          + +     H A+ D+   + ++IK+      
Sbjct: 115 RMDTVELAQVFFPNLEKYNL---GHLAKNMDLHLAHAHTAIDDALATAKLFIKIQKKIES 171

Query: 181 I 181
           +
Sbjct: 172 L 172


>gi|239944923|ref|ZP_04696860.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998]
 gi|239991387|ref|ZP_04712051.1| DNA polymerase III [Streptomyces roseosporus NRRL 11379]
 gi|291448385|ref|ZP_06587775.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351332|gb|EFE78236.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 641

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 9/175 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+ET+GL ++ DR++ +  + +  D  +T   F   L P      P  +++HG+T E L
Sbjct: 23  VDVETSGLVARRDRVLSVAVITIGPDGEQTGE-FSTLLDPG---CDPGPVEVHGLTAERL 78

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P+F  +         +     +AHNA+FD  F+  E  R         R+       
Sbjct: 79  RGAPTFDQVAGRIGAMLQD--RVLVAHNAQFDYDFLAHEFARARMWLPVSQRLCTLALNR 136

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +   P+    L +L   Y +       H AL D+ +L+ +    +   ++++   
Sbjct: 137 QVDPPTDDMKLGTLATHYDVPQQRA--HDALDDTRVLAGILRASLREAARLDLPL 189


>gi|187925051|ref|YP_001896693.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN]
 gi|187716245|gb|ACD17469.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans
           PsJN]
          Length = 383

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  +   RI E+G VE+     +   +   + P  +       +L GIT+  
Sbjct: 16  VFVDLETTGGSTAEHRITEVGVVEIGPAGVS--RWSSLVDPQ-QPIPSFIQQLTGITNAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           ++  P+F  I  E +   N     ++AHNA FD GF+  E +
Sbjct: 73  VRGAPTFDVIAPELFKRLNG--KLFVAHNASFDRGFLRGEFR 112


>gi|120553208|ref|YP_957559.1| DNA polymerase III subunit epsilon [Marinobacter aquaeolei VT8]
 gi|120323057|gb|ABM17372.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
          Length = 240

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 2/133 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL++    I+ IG V   L   +  + +   + P        ++ +HGIT  
Sbjct: 51  VALDFETTGLEADQHSIVSIGLVPFTLTGIQLGQCWHQVVRP-RLPLHKTSVTIHGITHS 109

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P    +    ++  N +       N +        + +   +        +   +
Sbjct: 110 EIENAPDLEDVLDPLFEHLNGRIPVVHYRNIERPFLNTALQWRLNEQLRFPVIDTMAIEA 169

Query: 129 IARRKHPSSRNDL 141
                   SR   
Sbjct: 170 HLHPNRNPSRWQQ 182


>gi|258545959|ref|ZP_05706193.1| ribonuclease T [Cardiobacterium hominis ATCC 15826]
 gi|258518837|gb|EEV87696.1| ribonuclease T [Cardiobacterium hominis ATCC 15826]
          Length = 212

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 15/185 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G D+K D ++E+ AV L+++ +  R     T    + P  G    PEALK+ 
Sbjct: 16  VVIDVETGGFDAKKDALLELAAV-LVNFDENQRLCRTHTIHYHIHPFPGANIDPEALKIT 74

Query: 64  GITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           GI                  F      +        +  + HNA FD+GFINA  +R + 
Sbjct: 75  GIDPYHPLRPAYHEDKAAERFFDEIRAYQKQQECTRSILVGHNATFDLGFINALAERTDY 134

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                       +++       +  L  + ++ G        HGA  D+ L +D++  ++
Sbjct: 135 KRNPFHPFSVLDTVSLGALAYGQTVLARIARQGGFEYDSSKAHGAKYDAELTADIFCHIV 194

Query: 176 VGGSQ 180
              ++
Sbjct: 195 NTWAE 199


>gi|323439142|gb|EGA96870.1| DNA polymerase III alpha chain [Staphylococcus aureus O11]
 gi|323441573|gb|EGA99223.1| DNA polymerase III alpha chain [Staphylococcus aureus O46]
          Length = 157

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 9/127 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI+      +  D ET   + K   I  +G V+++D   T  TF   + P     S + +
Sbjct: 1   MIQDA---FVALDFET--ANGKRTSICSVGMVKVIDSQIT-ETFHTLVNPQD-YFSQQNI 53

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K+HGI  E +++ P+F  +F     F  +     +AHNA FD+  ++  +Q I     + 
Sbjct: 54  KVHGIQPEDVENAPTFDYVFPYMMQFIAD--LPVVAHNAAFDMNVLHQSIQNIGLPTPNL 111

Query: 121 SRIIDTL 127
           +      
Sbjct: 112 TYFCSYQ 118


>gi|251779366|ref|ZP_04822286.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243083681|gb|EES49571.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 309

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 64/178 (35%), Gaps = 8/178 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D           + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFET--ANEKRNSPCSIGIVVVKDGKIIEEV-HHLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  ++ +   +FNE     IAHNA FD+  +   L+  N +      I   
Sbjct: 58  PRMVQDELEFDKVWEKIKHYFNE--NLVIAHNASFDISVLRNTLELYNIEMPSFQYICTM 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                         LN++    G        H AL D+    ++ + +    +  +  
Sbjct: 116 KLSKNFYSNLDNARLNTVNNFLG---YEFKHHDALADAMACGNILLNICEELNTRDIN 170


>gi|268592614|ref|ZP_06126835.1| ribonuclease T [Providencia rettgeri DSM 1131]
 gi|291311752|gb|EFE52205.1| ribonuclease T [Providencia rettgeri DSM 1131]
          Length = 214

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 13/195 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L    D   + + T    + P  G    P AL   G
Sbjct: 20  VVIDVETGGFNAKTDGLLEIAAITLKMDKDGWLSMDETLHFHVEPFEGANLEPSALAFTG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +     +   A  +AHNA FD  F+    +R    
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKVIRKGMKNTDCNRAIIVAHNANFDHSFVMNAAERAGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI    +  HGAL D++  + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVFGQTILAKACVSAGIPFDGKQAHGALYDTNRTALLFCEIVN 199

Query: 177 GGSQINFGFKTNEDR 191
              ++       E +
Sbjct: 200 KWKKLGGWPIIEESQ 214


>gi|330979930|gb|EGH78228.1| exonuclease [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 95

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSP 57
          R +V D+ET+GL+   D+++ IGAV + D +    + F+   L  + + +  
Sbjct: 42 RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPA 93


>gi|291544952|emb|CBL18061.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Ruminococcus sp. 18P13]
          Length = 176

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 9/170 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ET   +  NDR+  IG   + D       F   + P          KL GI  +
Sbjct: 4   YIVFDVET--PNRSNDRMSAIGISAIKDNKIVANYF-SLVDPETH-FDYFNTKLTGIDAD 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K  P+F+ ++ +     ++     +AHNA F++  + A L+         ++ +  + 
Sbjct: 60  KVKGAPNFAELWKKIDPIMSK--GILVAHNAVFNMSVLRACLRDYGISWKPTAKYLCMVR 117

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           I RR  P  +++LN +C  YG        H A  DSH  +++ ++ +  G
Sbjct: 118 IGRRVLPDMKHNLNVMCDHYG---IALDHHQADSDSHACAEILLRYIESG 164


>gi|332366322|gb|EGJ44074.1| DNA polymerase III [Streptococcus sanguinis SK1059]
          Length = 267

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V + +   T +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++   +  A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                L+         +  L +LC      IS  + H AL D+   + +++K+      +
Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172

Query: 182 NFGF 185
               
Sbjct: 173 PKAL 176


>gi|332362812|gb|EGJ40606.1| DNA polymerase III [Streptococcus sanguinis SK355]
          Length = 814

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V + +   T +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++   +  A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                L+         +  L +LC      IS  + H AL D+   + +++K+      +
Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172

Query: 182 NFGF 185
               
Sbjct: 173 PKAL 176


>gi|328945970|gb|EGG40117.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis
           SK1087]
          Length = 814

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V + +   T +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++   +  A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                L+         +  L +LC      IS  + H AL D+   + +++K+      +
Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172

Query: 182 NFGF 185
               
Sbjct: 173 PKAL 176


>gi|327473768|gb|EGF19186.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK408]
          Length = 814

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V + +   T +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++   +  A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                L+         +  L +LC      IS  + H AL D+   + +++K+      +
Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172

Query: 182 NFGF 185
               
Sbjct: 173 PKAL 176


>gi|327459895|gb|EGF06235.1| DNA polymerase III [Streptococcus sanguinis SK1057]
          Length = 814

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V + +   T +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++   +  A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                L+         +  L +LC      IS  + H AL D+   + +++K+      +
Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172

Query: 182 NFGF 185
               
Sbjct: 173 PKAL 176


>gi|325689970|gb|EGD31974.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK115]
          Length = 814

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V + +   T +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++   +  A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                L+         +  L +LC      IS  + H AL D+   + +++K+      +
Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172

Query: 182 NFGF 185
               
Sbjct: 173 PKAL 176


>gi|268319456|ref|YP_003293112.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785]
 gi|262397831|emb|CAX66845.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785]
          Length = 938

 Score = 54.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 9  KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            V D+ETTG   ++ D II+ G   +       +T+   + P+ R+       L  I++
Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKKRKVV-KTYSFLINPH-REIPQAVENLTHISN 67

Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
          E +     FS    +               N 
Sbjct: 68 EDVAKAHDFSYYAPKIRKILENTIFVAHNVNF 99


>gi|256390076|ref|YP_003111640.1| exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
 gi|256356302|gb|ACU69799.1| Exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
          Length = 204

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 5/141 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G       I+E+  V +    +   ++   L P G      A ++HGIT E
Sbjct: 12  YAVVDVETSGFQPPIAEILEVAIVHVDATGQVTGSWDSLLRPQG---GVGATRVHGITRE 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +  E      +     +AHN  FD  F+  +  R+     + +    TL 
Sbjct: 69  MVEPAPRFEDVGMELHGLLVD--RVVVAHNLAFDAKFLVTQFARLGVHSPEIAGGACTLR 126

Query: 129 IARRKHPSSRNDLNSLCKRYG 149
            ++   P     L   C+  G
Sbjct: 127 TSQAMLPGPSYKLLDCCEAVG 147


>gi|305665420|ref|YP_003861707.1| DNA polymerase III subunit alpha [Maribacter sp. HTCC2170]
 gi|88710175|gb|EAR02407.1| DNA polymerase III alpha subunit [Maribacter sp. HTCC2170]
          Length = 1478

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 76/250 (30%), Gaps = 31/250 (12%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + +          R I+I      +      +    + P+G     +
Sbjct: 2   YLIFDTETTGLPKRWNAPITDTDNWPRCIQIAWQLHDEMGNLVESQDYLVQPDGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A ++HGI+ E    +    +   E ++    +    +  N  FDV  + AE  R+  +  
Sbjct: 62  AEQIHGISTELAAQEGVPLAEVLEKFNVAMSKTKFIVGQNVGFDVNIMGAEFHRMGVENP 121

Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                +                           +    Y         H A  D    + 
Sbjct: 122 LQELPVLDTCTEESALLCQIPGGRGGKFKLPTLTELHEYLFNAPFAEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
            +++++  G           D F    +     I L+        + +           +
Sbjct: 182 CFLELVRRGHYTIEQLDVQPDYFKNFSEVHPQTIELIGLKHINLKKAS-----------K 230

Query: 230 TLGKNAIWDR 239
            +  +A+W++
Sbjct: 231 KIA-DALWEK 239


>gi|325579056|ref|ZP_08149012.1| ribonuclease T [Haemophilus parainfluenzae ATCC 33392]
 gi|325159291|gb|EGC71425.1| ribonuclease T [Haemophilus parainfluenzae ATCC 33392]
          Length = 229

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G D+K D ++E+ A+ L          ++     + P  G   +PE+LK +G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDGNGNLHPDQKCHFHIEPFEGANINPESLKFNG 82

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +          Q +  +AHNA FD  F+ A  +R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRGQKDAECQRSIIVAHNAAFDQSFVMAAAERTGVK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    +  H AL D+   ++++  M+ 
Sbjct: 143 RNPFHPFGMFDTATLAGFMFGQTVLVKACQAAKIPFDGKQAHSALYDTERTAELFCYMVN 202

Query: 177 GGSQIN 182
              ++ 
Sbjct: 203 HLKELG 208


>gi|319954745|ref|YP_004166012.1| exonuclease rnase t and DNA polymerase iii [Cellulophaga algicola
          DSM 14237]
 gi|319423405|gb|ADV50514.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga algicola
          DSM 14237]
          Length = 220

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALK 61
          V D ETTG D  NDRI+ IGAV+L+         F+VF+           + 
Sbjct: 38 VLDTETTGFDYSNDRILCIGAVKLVQQQIAIRDGFEVFVTQQVYGKDAAPIH 89


>gi|237746008|ref|ZP_04576488.1| exonuclease [Oxalobacter formigenes HOxBLS]
 gi|229377359|gb|EEO27450.1| exonuclease [Oxalobacter formigenes HOxBLS]
          Length = 305

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 69/239 (28%), Gaps = 29/239 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL S+ D IIE+G V          +F     P+ +K       L    D  
Sbjct: 57  VFLDTETTGLSSETDVIIELGLVR--------ASFS----PSKKKLVSLDAILSAYEDPG 104

Query: 70  LKDKPSFSSIFSEFWD-----FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
               P  + +     +       +E+       NA   V    A  +   +         
Sbjct: 105 KPLSPFITELTGITDEKVRGQRIDEKTVAGFLENAALIVAHNAAFDRPFFEKRFKGFDDR 164

Query: 125 DT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
               S+A     S       L +    +      H A LD   L+ ++       + + +
Sbjct: 165 KWACSLAGINWNSLGFKNLKLEELLLKSGYFYEAHRASLDCLALAWLFHVQNRAFADLLY 224

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKR-----------DKPLFTRITKEELDEHDKTIQTL 231
             +                 SL  R           ++  +  I +EEL      +  L
Sbjct: 225 QAEKKTVTVRAFGAPFEVRDSLKTRGYRWHDGTTGPNRHWWKEIPEEELAAEKNFLDEL 283


>gi|8134659|sp|O54364|RNT_PASHA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|2731432|gb|AAB93471.1| RNAse T [Mannheimia haemolytica]
          Length = 216

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET GL+++ D ++E+ A+ L      Y   ++     + P  G   +PE+LK +G
Sbjct: 23  VVIDVETAGLNAQTDALLELAAITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNG 82

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINK 115
           I  +             P    +  +       Q    +AHNA  D GF     ++RIN 
Sbjct: 83  IDIDNPLRGAVAENIAIPGMFIMVRKAMKEQGCQRGVIVAHNAASDPGFFYRAAIKRINA 142

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                       +         +  L   C+   I    +  H AL D+   ++++  M+
Sbjct: 143 KRDPFHPFAMFDTATLAGFMYGQTVLVKACQVAKIPFDGKQAHSALYDTERTAELFCAMV 202

Query: 176 VGGSQIN 182
                + 
Sbjct: 203 NRLKDLG 209


>gi|269961702|ref|ZP_06176063.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833567|gb|EEZ87665.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 239

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+ + + II IG V    +     +     + P   K   E++ +HGIT 
Sbjct: 49  FVALDFETTGLNPQKNGIITIGLVPFNLNRIFLRQAKHWKVRPQ-EKLDEESVIIHGITH 107

Query: 68  EFLKDKP 74
             L D P
Sbjct: 108 SELIDAP 114


>gi|227890026|ref|ZP_04007831.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC
          33200]
 gi|227849470|gb|EEJ59556.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC
          33200]
          Length = 938

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 9  KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            V D+ETTG   ++ D II+ G   +       +T+   + P+ R+       L  I++
Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKKRKVV-KTYSFLINPH-REIPQAVENLTHISN 67

Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
          E +     FS    +               N 
Sbjct: 68 EDVAKAHDFSYYAPKIRKILENTIFVAHNVNF 99


>gi|224417820|ref|ZP_03655826.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|253827160|ref|ZP_04870045.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|313141361|ref|ZP_07803554.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|253510566|gb|EES89225.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|313130392|gb|EFR48009.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
          Length = 247

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 5/117 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  + DIET G +    + IEIGA+          +F  F+     +      KL GIT 
Sbjct: 70  RFCIVDIETNGHNPFVHQPIEIGAIVYQGGKIC-ESFHSFV--FCEEIPEYITKLTGITS 126

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
             L+  P    +   F       +  ++AHN  FD  F++  L       L   R+ 
Sbjct: 127 PMLEKAPKIHQVLESF--KLFLSDCVFVAHNVNFDYQFLSNALYHYGFGYLYNPRLC 181


>gi|33593048|ref|NP_880692.1| putative exonuclease [Bordetella pertussis Tohama I]
 gi|33563423|emb|CAE42302.1| putative exonuclease [Bordetella pertussis Tohama I]
 gi|332382461|gb|AEE67308.1| putative exonuclease [Bordetella pertussis CS]
          Length = 224

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
            +V D+ETTGL      I+E  AV +    +  R F   +  +GR    
Sbjct: 57  FVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVRTDGRVLPF 105


>gi|152990271|ref|YP_001355993.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2]
 gi|151422132|dbj|BAF69636.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2]
          Length = 197

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 62/176 (35%), Gaps = 4/176 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGLD KND I+ I  + +  D    ++   + L P  +  S +++K+H +   
Sbjct: 25  VFIDCETTGLDPKNDEILSIACLPVKKDKILLSKALYLELKPQ-KDISAQSIKIHHLRAC 83

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+              F   +N     +  +FDV  I+   ++     L   +I  +  
Sbjct: 84  DLQGAMEPKEAIERVLYFI--KNRPVAGYYVEFDVKMISKYTKKFFGFTLPNKQIEVSGL 141

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
               K  +       L     +   +  K  A    +      +  +    +  +G
Sbjct: 142 YYDYKQKAIPQGFIDLKFDTILKDLNLPKLKAHNALNDTIMSAMIYLKLIKRRQYG 197


>gi|167645985|ref|YP_001683648.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31]
 gi|167348415|gb|ABZ71150.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
          Length = 296

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 57/228 (25%), Gaps = 11/228 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTGLD++ D IIE+  +         R ++V    +G +     +         +
Sbjct: 44  FVDVETTGLDTRRDEIIELAMIPFRYG-LVGRIYEVMEPFHGYRQPARPISAEITALTGI 102

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D                   A  +  +       +      + +       +       
Sbjct: 103 DDAMVEGQSIDPEAVAAFAAPAALVIAHNASFDRRLLERFSPVFQTKPWACSMSQIDWKD 162

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL------SDVYIKMMVGGSQINFG 184
                     L +    +       +   A ++               +++      ++ 
Sbjct: 163 EGHEGVKLAYLAAGAGFFYDRHRATNDCAAAIELLARDLPKSGQPALARLLEQARTPSWR 222

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRD----KPLFTRITKEELDEHDKTI 228
                  F  ++K           D    +  +  + + + D     +
Sbjct: 223 IWAENSPFAMKDKLKARGYRWSGDDAVPSRCWYVDVAEADKDAELLFL 270


>gi|170755669|ref|YP_001779899.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str.
           Okra]
 gi|169120881|gb|ACA44717.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str.
           Okra]
          Length = 309

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 72/215 (33%), Gaps = 17/215 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +KD+  F  I+ +  D+F   N   IAHNA FD+  + + L+  N        I   
Sbjct: 58  PHMVKDELEFDKIWQKIKDYF--NNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTM 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-- 184
                         LN++    G        H AL D+   S++ + +    +  N    
Sbjct: 116 KLSKNFYSNIDNARLNTINNFLG---YKFKHHDALADAMACSNILLNISKELNSKNINEI 172

Query: 185 -------FKTNEDRFFKEEKKTVPNISLLKRDKPL 212
                       +  +K        +    R  P 
Sbjct: 173 SKLIGVTLGYVNENGYKPSSTKGRILKRSNRQAPR 207


>gi|241589662|ref|YP_002979687.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
           12D]
 gi|240868374|gb|ACS66033.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
           12D]
          Length = 330

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 60/170 (35%), Gaps = 8/170 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D ETTGL +   D ++E+  ++          F+  + PN     P A  +HGIT
Sbjct: 159 RTVYLDTETTGLSAASGDELLELAVIDDAGKVL----FETLIRPNHLTEWPAAQVIHGIT 214

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +   PS S++         E     +  NA FD+GF+   L+ + K     +     
Sbjct: 215 PADVAGAPSLSAVLQGLAAAI-EGAEALVIFNADFDLGFLPEPLRPLAKQKARCAMQAFA 273

Query: 127 LSIARRKHPSSRNDLNS--LCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L               +          +     H A  D+  +  V+  +
Sbjct: 274 LWCGEWDDYRYSYRWQNLQQAAAIAGHVWEGRAHRARADAFAVRTVWHWL 323


>gi|153006661|ref|YP_001380986.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030234|gb|ABS28002.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
          Length = 200

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 4/110 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLC-PNGRKNSPEALKLHGITDE 68
             D+ET GLD++ D II IG + +   +      +   +  P GR   P++++ H +   
Sbjct: 15  ALDLETGGLDARRDPIIAIGMLPIRHGTLRLGEAYYSLVRPPPGRIIDPDSVRAHQLVAG 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            L++ P+   +  E      E     + H+   DV F+    +R      
Sbjct: 75  ELREAPAIGEVLREVDRRLRE--GVLLVHHRALDVAFLKDAYRRCGMRWP 122


>gi|310830415|ref|YP_003965516.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2]
 gi|309249882|gb|ADO59448.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2]
          Length = 193

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 8/128 (6%)

Query: 7   MRKIVFDIETTGLDSKNDR-----IIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEAL 60
           M  I+ D+E T    +NDR     IIEIGAV+L D+      FQ F+ P      S   +
Sbjct: 1   MNYIIVDLEAT--CWENDRSKRNEIIEIGAVKLDDHLNVVSEFQAFVKPKLYPQLSEFCM 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L  I    +    +F ++  +F  +                    + +L +     L  
Sbjct: 59  QLTSIEQHDVDHAATFETVLEDFQSWMGSNYWLCSWGYYDKKQLKSDCDLHKQPTSWLRN 118

Query: 121 SRIIDTLS 128
              I    
Sbjct: 119 HISIKHQH 126


>gi|251772732|gb|EES53294.1| DNA polymerase III, epsilon subunit [Leptospirillum
           ferrodiazotrophum]
          Length = 288

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 5/109 (4%)

Query: 11  VFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             D+ETTGL  +ND RI+EIG + + D           + P G    P   ++HGI D  
Sbjct: 33  FVDVETTGLLFENDARIVEIG-ISVWDSFGLKERMTSLINP-GSPIPPMYTRIHGIDDVM 90

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           ++  P+F  +     +    Q    IAHN  FD+G IN EL R +  PL
Sbjct: 91  VEHSPTF--LEFWMENGIRFQGKVVIAHNLSFDMGMINRELMRRDMAPL 137


>gi|229844583|ref|ZP_04464723.1| ribonuclease T [Haemophilus influenzae 6P18H1]
 gi|229812832|gb|EEP48521.1| ribonuclease T [Haemophilus influenzae 6P18H1]
 gi|301169030|emb|CBW28627.1| ribonuclease T (RNase T) [Haemophilus influenzae 10810]
          Length = 229

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   +PE+LK +G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +        + Q +  +AHNA FD  F+ A  +R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAERTGVK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + +       +  L   C    I    +  H AL D+   + ++  M+ 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACLAAKIPFDGKQAHSALYDTERTAKLFCYMVN 202

Query: 177 GGSQIN 182
               + 
Sbjct: 203 HLKDLG 208


>gi|327469619|gb|EGF15088.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK330]
          Length = 814

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 8/180 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V + +   T +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++   +  A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                L+         +  L +LC      IS  + H AL D+   + +++K+      +
Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172


>gi|12044881|ref|NP_072691.1| DNA polymerase III PolC [Mycoplasma genitalium G37]
 gi|1352298|sp|P47277|DPO3_MYCGE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|3844641|gb|AAC71247.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           genitalium G37]
 gi|166078825|gb|ABY79443.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
           Mycoplasma genitalium JCVI-1.0]
          Length = 1451

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 63/189 (33%), Gaps = 5/189 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL  + D +IE  A ++ + S+     Q FL                    
Sbjct: 416 FVIFDIETTGLHGRYDDVIEFSARKIKNNSEI-DHQQFFLK---IDKPIPKTITEITKIT 471

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               +                 +   +AHN                      + +IDTL 
Sbjct: 472 DEMLEGGIDQQQGLEKIRNYLDDCVMVAHNGINFDLPFLQTQFEKYNIKPLTNPLIDTLC 531

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++   +P  S + L+++C +  +       H A  D+  L  V+        ++     T
Sbjct: 532 LSWALNPLFSSHTLSNICSKLKLEFDDERLHRAEYDTEALKKVFFYFKKQLKEMGINTLT 591

Query: 188 NEDRFFKEE 196
             D+   ++
Sbjct: 592 EIDQNLNKK 600


>gi|328958152|ref|YP_004375538.1| DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4]
 gi|328674476|gb|AEB30522.1| DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4]
          Length = 177

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 5/167 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET     +      I    + +       +   + P         +++HGIT
Sbjct: 1   MNFVALDFET--ASHQRHSACSIALTVVKNSQIV-DHYYSLIKPETEFF-WRNVQIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++  PSF     E    F ++N   +AHN  FD G +   L            +   
Sbjct: 57  EDDVQTAPSF-PEVWEKIKPFFKENKLIVAHNLPFDRGVLQGCLDYYQLQQPHFQTLCTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            S  +       + LN++C   GI + +        ++     +Y++
Sbjct: 116 QSSRKLITEIPNHKLNTVCDHLGIRLDNHHNALEDSNACAAILLYLE 162


>gi|326335468|ref|ZP_08201655.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692234|gb|EGD34186.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 453

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 7/172 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI          T+R F   + P  +K       L GI+++
Sbjct: 2   YAILDIETTGGKLNEESITEIAIYRFDGNEVTDR-FISLINPE-KKIDDFVAHLTGISNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P F  +     +         +AHNA FD   +  E +R+  D       I T+ 
Sbjct: 60  MVRNAPKFYEVAKRIIE--ITDGCIIVAHNAAFDYRILRLEFRRLGFD--FHRNTICTVE 115

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +++R  P   +       R  + I    +H A  D+     ++  ++   +Q
Sbjct: 116 MSQRLLPQESSYSLGKLTRS-LGIPLLGRHRANGDAMATVHLFKLLLTKDTQ 166


>gi|167623615|ref|YP_001673909.1| ribonuclease T [Shewanella halifaxensis HAW-EB4]
 gi|167353637|gb|ABZ76250.1| ribonuclease T [Shewanella halifaxensis HAW-EB4]
          Length = 231

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIG--AVELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI    +++ D      ++T    + P  G    PEAL   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAVSMLKMDDEGVLSLDKTLHFNIEPFEGSNLEPEALAFTG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +         +  +AHNA FD GF+   ++R    
Sbjct: 80  IDPTSPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVTQAIERNALK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A          L   C   GI   +R  H AL D+   ++++  ++ 
Sbjct: 140 RTPFHPFATFDTAALAGLAIGHTVLAKACAMAGIAFDNREAHSALYDTERTAELFCLIVN 199

Query: 177 GGSQIN 182
               + 
Sbjct: 200 RWKALG 205


>gi|90412153|ref|ZP_01220159.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
 gi|90326877|gb|EAS43262.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
          Length = 238

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+ K D II IG V   L+    NR     + P  + N    +  +   +
Sbjct: 48  FVAMDFETTGLNVKKDGIITIGLVPFTLNRVYINRAQHWIVRPRQKLNEQSVVIHNITHN 107


>gi|260768304|ref|ZP_05877238.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260616334|gb|EEX41519.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
          Length = 193

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
          M  +  D ETTGL    D II IG V   L+    NR     + P  +K    ++ +HGI
Sbjct: 1  MEFVAMDFETTGLSVDKDEIITIGLVPFTLERIYLNRAKHWTVRP-RQKLDEHSIVIHGI 59

Query: 66 TDEFLKDKPSFSSIFSEFWDFF 87
          T   + D P  S IF E  +  
Sbjct: 60 THNDIMDAPDLSDIFEEVLEHL 81


>gi|120436992|ref|YP_862678.1| exonuclease domain-containing protein [Gramella forsetii KT0803]
 gi|117579142|emb|CAL67611.1| protein containing exonuclease domain [Gramella forsetii KT0803]
          Length = 507

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 5/160 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  + DIETTG   K +RI EI  + + +    +  +   + P  +        L GI D
Sbjct: 5   KFAITDIETTGNGIKGNRITEICVIVVQNGKVIDE-YSSLVNP-SQAIPLYIETLTGIND 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + + P FS I  E       ++  ++AHN  FD   I AE   +++D          L
Sbjct: 63  EMVFNAPQFSEIADEITK--ITKDCIFVAHNVNFDYNIIRAEFASLDRDFKRKRLCTVRL 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           +            L ++C    I    R +     D+ + 
Sbjct: 121 TKKLIPG-LFSYSLGNICTSINIPHIDRHRAKGDCDATVT 159


>gi|126437831|ref|YP_001073522.1| DNA polymerase III subunit epsilon [Mycobacterium sp. JLS]
 gi|126237631|gb|ABO01032.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS]
          Length = 330

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 71/190 (37%), Gaps = 7/190 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RI+ + A+ + D     ++    L P      P    +HG+T E L
Sbjct: 19  VVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATLLNPG---VDPGPTHVHGLTAEML 75

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  I ++  +         +AHN  FD  F+ AE + +  +    S +       
Sbjct: 76  EGAPRFGDIVADLAELLRG--RTLVAHNVGFDYSFLTAEAELVGAELPIDSVMCTVELAR 133

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R    +    L +L   +G+       H AL D+ +L+ +    +    +      T   
Sbjct: 134 RLDLGTENLRLETLAAHWGVP--QLKPHDALDDAQVLAQILKPTLARARERRAWLPTRSV 191

Query: 191 RFFKEEKKTV 200
              +     V
Sbjct: 192 SRRRWPNGRV 201


>gi|15602853|ref|NP_245925.1| ribonuclease T [Pasteurella multocida subsp. multocida str. Pm70]
 gi|13431828|sp|P57896|RNT_PASMU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|12721315|gb|AAK03072.1| Rnt [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 220

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 70/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G ++K D ++E+ A+ +    D     ++T    + P  G   +PE+L+ +G
Sbjct: 24  VIIDVETAGFNAKTDALLELAAITVKMNEDGLLVPDQTCHFHIEPFAGANINPESLQFNG 83

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +     + Q +  +AHNA FD  F+ A  +R    
Sbjct: 84  IDIHNPLRGAVSETVAITELFKMVRKAQKAADCQRSIIVAHNAAFDQSFLMAAAERTGVK 143

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    +  H AL D+   ++++  M+ 
Sbjct: 144 RNPFHPFGMFDTATLSGFMFGQTVLVKACQAAQIAFDGKQAHSALYDTERTAELFCYMVN 203

Query: 177 GGSQIN 182
               + 
Sbjct: 204 HLKHLG 209


>gi|320529722|ref|ZP_08030801.1| exonuclease [Selenomonas artemidis F0399]
 gi|320138083|gb|EFW29986.1| exonuclease [Selenomonas artemidis F0399]
          Length = 221

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 68/219 (31%), Gaps = 15/219 (6%)

Query: 6   KMRKIVFDIETT--GLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           +M+ IV D+E    G + K      N  IIEIGAV L +       FQ ++CP       
Sbjct: 2   RMKHIVVDLEMNPIGKEYKEIRRKLNGEIIEIGAVRLSEKFVQEDKFQCYVCPEYGLVKK 61

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA---KFDVGFINAELQRIN 114
              +L GIT E +  +  F+  F  F D+      +  + +    K        ++   +
Sbjct: 62  HITELTGITQEKVSGQRVFAESFKNFVDWIGASETKIYSWSMSDIKQLRKECRLKVPDFD 121

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK----HGALLDSHLLSDV 170
            + LD   +    +   R    +   L       G                  + L    
Sbjct: 122 VNWLDMRWVDLQQAFDDRLGLHNSLALKHALGAMGRRFEGTQHSALADAINTSAVLTLMQ 181

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
             +      +         +          P++  LK +
Sbjct: 182 DDEKFRETMRPVLEILEPSEGLSDAIGDLFPDLEKLKNN 220


>gi|325687825|gb|EGD29845.1| DNA polymerase III [Streptococcus sanguinis SK72]
          Length = 814

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V + +   T +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++   +  A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                L+         +  L +LC      IS  + H AL D+   + +++K+      +
Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCGLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172

Query: 182 NFGF 185
               
Sbjct: 173 PKAL 176


>gi|260779364|ref|ZP_05888256.1| ribonuclease T [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605528|gb|EEX31823.1| ribonuclease T [Vibrio coralliilyticus ATCC BAA-450]
          Length = 219

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 14/200 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L    +       T    + P  G     EAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLKMDENGELQPASTIHFHVEPFEGANLEKEALDFNG 79

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F   +              +  +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 80  IHDPFSPLRGAVPESEALKEIYKLVRKEQKAADCSRAIMVAHNATFDHNFVMAASERSKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   ++  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKTAGMDFDNKEAHSALYDTLKTAELFCGIV 199

Query: 176 VGGSQINFGFKTNEDRFFKE 195
                +      +ED    +
Sbjct: 200 NKWKALGGWPLIDEDAENNK 219


>gi|108801863|ref|YP_642060.1| DNA polymerase III subunit epsilon [Mycobacterium sp. MCS]
 gi|119871016|ref|YP_940968.1| DNA polymerase III subunit epsilon [Mycobacterium sp. KMS]
 gi|108772282|gb|ABG11004.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
 gi|119697105|gb|ABL94178.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
          Length = 330

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 7/190 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RI+ + A+ + D     ++    L P      P    +HG+T E L
Sbjct: 19  VVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATLLNPG---VDPGPTHVHGLTAEML 75

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  + ++  +         +AHN  FD  F+ AE + +  +    S +       
Sbjct: 76  EGAPRFGDVVADLAELLRG--RTLVAHNVGFDYSFLTAEAELVGAELPIDSVMCTVELAR 133

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R    +    L +L   +G+       H AL D+ +L+ +    +    +      T   
Sbjct: 134 RLDLGTENLRLETLAAHWGVP--QLKPHDALDDAQVLAQILKPTLARARERRAWLPTRSV 191

Query: 191 RFFKEEKKTV 200
              +     V
Sbjct: 192 SRRRWPNGRV 201


>gi|330895532|gb|EGH27842.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 203

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 7/207 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RIAVIDFETTGISPGHSCRATEIAVVIMAQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIERT--REQSFACS 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +ARR  P + N       RY         H A+ D+ + +++   +     Q +    
Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTAYLTNELRQTHGISA 176

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLF 213
            +       +K     IS   + +   
Sbjct: 177 ISHKMLCSLQKVPAAKISETLKRQRGV 203


>gi|302554712|ref|ZP_07307054.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
 gi|302472330|gb|EFL35423.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
          Length = 623

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 7/201 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ET+GL    DR++ +  + L         F   L P      P  + +HG+T   L 
Sbjct: 35  VDVETSGLRPGRDRVLSLAILTLDARGNQTGEFATLLNPG---CDPGPVHIHGLTPARLA 91

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P+F  I  +     +      +AHNA+FD  F+  E   +        R+        
Sbjct: 92  GAPTFEEIAPQVGALLSG--RVLVAHNAQFDYDFLAHEFAHVRSWVPVSRRLCTLALNRL 149

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191
               +    L +L   YG+       H A  D  +LS +    +    ++       +  
Sbjct: 150 VGSATPDLKLGTLAAHYGVR--QERAHDAQDDVRVLSGILRGSLGAAERLGLSLPLLDCP 207

Query: 192 FFKEEKKTVPNISLLKRDKPL 212
             ++ +  VP      R+   
Sbjct: 208 PRQDYQPYVPKTPCAYRNPGR 228


>gi|253700819|ref|YP_003022008.1| exonuclease RNase T and DNA polymerase III [Geobacter sp. M21]
 gi|251775669|gb|ACT18250.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M21]
          Length = 312

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44
           D ETTGLD K D++IE+G V      +T   F
Sbjct: 57 LDTETTGLDYKRDKVIELGIVAFEYDPETGEIF 89


>gi|308535281|ref|YP_002138830.2| 3'-to-5' exonuclease [Geobacter bemidjiensis Bem]
 gi|308052626|gb|ACH39034.2| 3'-to-5' exonuclease, putative [Geobacter bemidjiensis Bem]
          Length = 312

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44
           D ETTGLD K D++IE+G V      +T   F
Sbjct: 57 LDTETTGLDYKRDKVIELGIVAFEYDPETGEIF 89


>gi|254228313|ref|ZP_04921740.1| DNA polymerase III subunit epsilon [Vibrio sp. Ex25]
 gi|262394378|ref|YP_003286232.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|151939119|gb|EDN57950.1| DNA polymerase III subunit epsilon [Vibrio sp. Ex25]
 gi|262337972|gb|ACY51767.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
          Length = 248

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 71/192 (36%), Gaps = 17/192 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+++ D I+ IG V   +D  + + +    + PN R+ + E++ +HGITD
Sbjct: 58  FVSVDFETTGLNAEEDAILTIGLVPFTIDRVQCSGSAHWVVNPN-RELNEESVVIHGITD 116

Query: 68  EFLKDKPSFSSIFSE------------FWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             +K+ P  + I  E             +     Q       N+  +            +
Sbjct: 117 SEVKNAPQLTHILGEILDALSGKVVLVHYKNIERQFFNNALLNSIGEGIHFPVVDTLDIE 176

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +  + K P S    ++  +     +     H AL D+   ++++   +
Sbjct: 177 HAIQRRECSGLFNKLKGKKPGSVRLGHARERYR---LPAYQPHHALTDALATAELFQAQL 233

Query: 176 VGGSQINFGFKT 187
                 +    +
Sbjct: 234 QYHFNRSMPISS 245


>gi|322804522|emb|CBZ02073.1| putative DNA polymerase III epsilon chain [Clostridium botulinum
           H04402 065]
          Length = 309

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 66/212 (31%), Gaps = 11/212 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +KD+  F  I+ +  D+F   N   IAHNA FD+  + + L+  N        I   
Sbjct: 58  PHMVKDELEFDKIWGKIKDYF--NNNLVIAHNASFDMSVLKSTLKLYNIKMPSFEYICTM 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG------SQ 180
                         LN++    G    H       +    +     K +           
Sbjct: 116 KLSKNFYSNIDNARLNTVNNFLGYKFKHHDALADAMACSNILINISKELNSKDINEISKL 175

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
           I        +  +K        +    R  P 
Sbjct: 176 IGVTLGYVNENGYKPSSTKGRILKRSNRQAPK 207


>gi|300813469|ref|ZP_07093813.1| CRISPR-associated endoribonuclease Cas2 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512418|gb|EFK39574.1| CRISPR-associated endoribonuclease Cas2 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 297

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           + N    +V DIET GLD   + IIEIGAV++ +       F   + 
Sbjct: 124 KNNLKPYVVIDIETDGLDFDKNLIIEIGAVKVENEKF--EEFTRLIK 168


>gi|121635139|ref|YP_975384.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18]
 gi|120866845|emb|CAM10604.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18]
 gi|325132197|gb|EGC54893.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M6190]
 gi|325138130|gb|EGC60703.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis ES14902]
 gi|325198587|gb|ADY94043.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis G2136]
          Length = 470

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +      + L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVVGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          +AHN++FD  F+    +         S ++ +
Sbjct: 85  DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRVGIGFSSPVLCS 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192


>gi|298208469|ref|YP_003716648.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Croceibacter atlanticus HTCC2559]
 gi|83848392|gb|EAP86261.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Croceibacter atlanticus HTCC2559]
          Length = 457

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 4/103 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +   +   ++     + P  R   P  + L GI ++
Sbjct: 2   YAILDIETTGGKYNEEGITEIAIYKFDGHEVVDQVI-SLVNPE-RPIQPFVVGLTGINND 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            L++ P F  I     +    Q+   +AHNAKFD   +  E +
Sbjct: 60  MLRNAPKFYEIAKRILE--ITQDCILVAHNAKFDYRILRTEFR 100


>gi|312963198|ref|ZP_07777682.1| DNA polymerase III epsilon subunit [Pseudomonas fluorescens WH6]
 gi|311282464|gb|EFQ61061.1| DNA polymerase III epsilon subunit [Pseudomonas fluorescens WH6]
          Length = 203

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 75/197 (38%), Gaps = 9/197 (4%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EIG V L      +R +Q  +   G +      +L GI+
Sbjct: 3   RIAVIDFETTGITPSSHCRATEIGVVILERGHIVDR-YQSLMN-AGVRVPAFIEQLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--I 124
           +  L+  P    + +E  +F        +AHNA FD  F + EL  I +  L       +
Sbjct: 61  NAMLRSAPPAERVMNEVNEFVGT--TPLMAHNAAFDQKFWDYELGLIRRTRLQKFACSLL 118

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQIN 182
               +           LNS  +      +HR+   A + ++L + +  ++    G  +++
Sbjct: 119 LARRLMPAAPNHKLGTLNSYAQLPHTGQAHRALADAEMAANLTTHLARELRQTHGLRELS 178

Query: 183 FGFKTNEDRFFKEEKKT 199
                   +    +   
Sbjct: 179 HDLLCTLQKVPAAKINE 195


>gi|307300662|ref|ZP_07580437.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium
          meliloti BL225C]
 gi|306904196|gb|EFN34781.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium
          meliloti BL225C]
          Length = 325

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R ++ D ETTGLD++   IIEIG V
Sbjct: 69 RGVILDTETTGLDARKCEIIEIGLV 93


>gi|16262589|ref|NP_435382.1| DNA polymerase III subunit epsilon [Sinorhizobium meliloti 1021]
 gi|307319072|ref|ZP_07598502.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium
          meliloti AK83]
 gi|14523204|gb|AAK64794.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306895179|gb|EFN25935.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium
          meliloti AK83]
          Length = 325

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R ++ D ETTGLD++   IIEIG V
Sbjct: 69 RGVILDTETTGLDARKCEIIEIGLV 93


>gi|325696784|gb|EGD38672.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK160]
          Length = 814

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S   +II+IG V + + S T +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-GAKIIQIGIVLIENGSIT-KTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++   +  A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                L+         +  L +LC      IS  + H AL D+   + +++K+      +
Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCDLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172

Query: 182 NFGF 185
               
Sbjct: 173 PKAL 176


>gi|168182135|ref|ZP_02616799.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Bf]
 gi|237793573|ref|YP_002861125.1| DNA polymerase III subunit epsilon [Clostridium botulinum Ba4 str.
           657]
 gi|182674639|gb|EDT86600.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Bf]
 gi|229262587|gb|ACQ53620.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Ba4 str. 657]
          Length = 309

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 71/215 (33%), Gaps = 17/215 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFET--ANEKRNSPCSIGIVVVKDGKIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +KD+  F  I+ +   +F   N   IAHNA FD+  + + L+  N        I   
Sbjct: 58  PHMVKDELEFDKIWEKIKGYF--NNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTM 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-- 184
                         LN++    G        H AL D+   S++ + +    +  N    
Sbjct: 116 KLSKNFYSSIDNARLNTVNNFLG---YKFQHHDALADAMACSNILLNISKELNSKNINEI 172

Query: 185 -------FKTNEDRFFKEEKKTVPNISLLKRDKPL 212
                       +  +K        +    R  P 
Sbjct: 173 SKLVGVTLGYVNENGYKPSSTKGRILKRSNRQAPK 207


>gi|150025957|ref|YP_001296783.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86]
 gi|149772498|emb|CAL43981.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 453

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 7/211 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +   +   ++ F   + P      P  +KL GI + 
Sbjct: 2   YAILDIETTGGQFNEEGITEIAIYKFDGHQIVDQ-FISLVNPE-IPIQPFVVKLTGINNA 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  +     +    ++   +AHN  FD   +  E  R+  D            
Sbjct: 60  MLVSAPKFHEVAKRIVE--ITKDCIIVAHNTVFDYRILRTEFSRLGYD---FQAKTLCTV 114

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
              +     +   +       + I   ++H A  D+     ++  ++    +     +  
Sbjct: 115 ELAKILIPEQPSYSLGKLVRALGIPITNRHRAEGDALATVKLFKMLLDKDLEKIIVKEQI 174

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           +    K     + NI     +K     I KE
Sbjct: 175 KTEITKGIAPKLLNIIESLPNKTGVYYIHKE 205


>gi|119471955|ref|ZP_01614240.1| DNA polymerase III subunit epsilon [Alteromonadales bacterium TW-7]
 gi|119445213|gb|EAW26504.1| DNA polymerase III subunit epsilon [Alteromonadales bacterium TW-7]
          Length = 234

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+SK D I+ +G V   L      ++    + P  R  S  ++ +HGIT 
Sbjct: 45  FVALDFETTGLNSKADDIVSVGLVPFTLARIYCKQSKHWVVQP-RRNLSESSIVIHGITH 103

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEW 94
             + + P F +I +   D    +    
Sbjct: 104 NDVDNAPDFDNIIAPLLDALRSKVIVV 130


>gi|319948216|ref|ZP_08022374.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4]
 gi|319438119|gb|EFV93081.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4]
          Length = 240

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
          R +  D+ETTGLD + DR++ +G V +       R
Sbjct: 44 RLLAVDVETTGLDPRRDRVVSVGFVPVDGDRIVLR 78


>gi|307578072|gb|ADN62041.1| ribonuclease T [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 198

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 62/183 (33%), Gaps = 13/183 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +  +  ++EI  + +                 + P  G    P++L++ G
Sbjct: 11  VVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTDIDPKSLEVTG 70

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 +        +  Q A  + HNA FD+ F+NA + R    
Sbjct: 71  IILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTAYK 130

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                +     ++        +  L    +  G+  +    H A+ D+   + ++  +  
Sbjct: 131 RNPFHQFSVFDTVTLAGMAYGQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFCTITN 190

Query: 177 GGS 179
              
Sbjct: 191 IWP 193


>gi|241767097|ref|ZP_04764869.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
 gi|241362329|gb|EER58323.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
          Length = 153

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+   +  R  E+  V L +    +R FQ  +   G    P   +L GIT+  
Sbjct: 7   VIDFETTGMGPGQGARATEVAIVLLDNGVVVDR-FQSLMK-TGAWIPPFITQLTGITNAM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           +   P  +++  E   F    NA  +AHNA FD  F  
Sbjct: 65  VNAAPQAAAVMREAARFV--GNAPMVAHNAAFDRKFWQ 100


>gi|319440529|ref|ZP_07989685.1| DNA polymerase III subunit epsilon [Corynebacterium variabile DSM
          44702]
          Length = 214

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
            D+ETTGLD K DR++ IG V L      
Sbjct: 28 AVDVETTGLDPKRDRLLSIGWVPLDGRVID 57


>gi|313895399|ref|ZP_07828956.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976294|gb|EFR41752.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 219

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 67/218 (30%), Gaps = 15/218 (6%)

Query: 7   MRKIVFDIETT--GLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M+ IV D+E    G + K      N  IIEIGAV L +       FQ ++CP        
Sbjct: 1   MKHIVVDLEMNPIGKEYKEIRRKLNGEIIEIGAVRLSEKFVQEDKFQCYVCPEYGLVKKH 60

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA---KFDVGFINAELQRINK 115
             +L GIT E +  +  F+  F  F D+      +  + +    K        ++   + 
Sbjct: 61  ITELTGITQEQVSGQRVFAESFKNFVDWIGASETKIYSWSMSDIKQLRKECRLKVPDFDV 120

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK----HGALLDSHLLSDVY 171
           + LD   +    +   R    +   L       G                  + L     
Sbjct: 121 NWLDMRWVDLQQAFDDRLGLHNSLALKHALGAMGRRFEGTQHSALADAINTSAVLTLMQD 180

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
            +      +         +          P++  LK +
Sbjct: 181 DEKFRETMRPVLEILEPSEGLSDAIGDLFPDLEKLKNN 218


>gi|268609211|ref|ZP_06142938.1| exonuclease [Ruminococcus flavefaciens FD-1]
          Length = 179

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 9/171 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R IVFD+ET   +  N+ +  IG   + D      +F   + P         ++L GI  
Sbjct: 3   RYIVFDVET--PNFANNHMSAIGITVVEDGR-IADSFFSLVDPETH-FDHFNIRLTGIDP 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++  P+F+ ++ +     N      +AHNA FD+  +   L     +    ++ + T+
Sbjct: 59  KKVQGAPNFAQLWQKIEPIMNS--GILVAHNAVFDMSVLKKCLSAYGIEWKSTAKYLCTV 116

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              R+  P   + LN +C  YG        H A  DS   +++ ++ +  G
Sbjct: 117 QAGRKLLPGRGHKLNEMCDYYG---ISLDHHQADSDSRACAEILLRYIESG 164


>gi|149195052|ref|ZP_01872144.1| Exonuclease [Caminibacter mediatlanticus TB-2]
 gi|149134765|gb|EDM23249.1| Exonuclease [Caminibacter mediatlanticus TB-2]
          Length = 293

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 8/174 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I+ D ETTG + + DRI ++  + L +  +        + P    +       H   
Sbjct: 1   MKIIILDTETTG-NKQEDRICQLSYLVLNEDLEIEEIHNELVKPPIPISYEAMAVHHITN 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +          +   +     N      + HN++FD+  +  E        +D  R++  
Sbjct: 60  EMVEDKPQIKFTNSYKRLKELNSPENIIVIHNSEFDLEMLRKEGFNPFFKLIDTFRVLKH 119

Query: 127 LSIARRKHPSSRND-------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    +                  +CK+Y ITI+     G ++  +LL +  +K
Sbjct: 120 ILPDGKFGLQYNRYALGLYKKEKDICKKYNITINAHDALGDVVVLYLLFEYILK 173


>gi|224476950|ref|YP_002634556.1| hypothetical protein Sca_1466 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421557|emb|CAL28371.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 185

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 9/188 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V+++D      TF   + PN    S + + +HGI  E
Sbjct: 7   FVALDFET--ANGKRTSICSVGMVKVVDNEIV-ETFYTLVNPND-YFSQQNINVHGIQPE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F+ +      F   +N   +AHNA FD+  ++A +Q +  D  + +       
Sbjct: 63  DVATAPVFNFVLPYMLQFI--ENLPVVAHNAAFDMTVLHASIQALGLDTPEMTYFCSLQL 120

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             R  + +     +         +     H AL D+   + +  +++     +N      
Sbjct: 121 ARRTVNANRYGLNH---MMEYYHLDFHGHHDALNDAKACAMITFRLLKNYDSLNDMLAVY 177

Query: 189 EDRFFKEE 196
                 + 
Sbjct: 178 GKNLIDKG 185


>gi|218295556|ref|ZP_03496369.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
 gi|218244188|gb|EED10714.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
          Length = 247

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL    + IIE+  V L    +    FQ    P  R  SP   +L GIT E 
Sbjct: 74  VVLDLETTGLAPGLNEIIEVALVRLEGERRV--AFQSLARP-RRPPSPFIQRLTGITLEE 130

Query: 70  LKDKPS 75
           L+  P 
Sbjct: 131 LEKAPP 136


>gi|295395919|ref|ZP_06806104.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971192|gb|EFG47082.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 536

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 7/212 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDEF 69
            FD+ETTG D     I+    +++     T+ T++  + P G   +  + +         
Sbjct: 321 AFDLETTGRDPHTAHIVSAALIDMR----THETWEWLIYPEGEIPAEASAVHGITTEYAR 376

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
               P   +I      F     A  +AHNA +D+     E        L    +IDTL I
Sbjct: 377 ENGMPRAQAIAQIHQVFAERTPACIVAHNAPYDLTIFARECA-QYGLALPDFFVIDTLVI 435

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKTN 188
            +   P  +             +S  + H A  D+     V + +     ++     +  
Sbjct: 436 DKHAEPFRKGPRTLDAVCARWGVSLDNAHDATADARASGLVALAIADAFPELAQLSAEQI 495

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
                + ++     +    R +     + + E
Sbjct: 496 HGAQKEWKRDQAARLQEYLRTRRNPNAVVEHE 527


>gi|156974173|ref|YP_001445080.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116]
 gi|156525767|gb|ABU70853.1| hypothetical protein VIBHAR_01887 [Vibrio harveyi ATCC BAA-1116]
          Length = 239

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+ + + II IG V    +     +     + P   K   +++ +HGIT 
Sbjct: 49  FVALDFETTGLNPQKNGIITIGLVPFNLNRIFLRQAKHWKVRPQ-EKLDEDSVIIHGITH 107

Query: 68  EFLKDKP 74
             L D P
Sbjct: 108 SELIDAP 114


>gi|331701432|ref|YP_004398391.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128775|gb|AEB73328.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           buchneri NRRL B-30929]
          Length = 945

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 7/172 (4%)

Query: 9   KIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V DIETTG D   D R I+     + +     +TF   + P  R+     ++L GIT+
Sbjct: 7   FAVVDIETTGTDISADNRTIQFSCCLVSNNKII-KTFVTDINPQ-REVPNRIVQLTGITN 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L+   +F  + ++ +      N  ++AHN  FD  F+N+E QR+    L    I    
Sbjct: 65  ERLQKAKTFDQVAAQLYSLL--NNTVFVAHNVNFDFPFLNSEFQRVGYPELQIEAIDTVT 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                    S   L  L   + I   H   H A  D+   + + + ++    
Sbjct: 123 LSQILLPTLSSYRLQDLSSYFNIEHDHP--HTADSDALATAKLLLILLRQIK 172


>gi|331082129|ref|ZP_08331257.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405724|gb|EGG85254.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 405

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 66/205 (32%), Gaps = 7/205 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FD+ET   +  NDRI     + L+   +  + +   + P  R        L GI   
Sbjct: 112 YIAFDVET--PNKNNDRI-SYAGILLVCNGEIIKNYSTLINPETR-FDHFNTVLTGIDAS 167

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+F   +    D F +     IAHNA FD+  ++  L            +     
Sbjct: 168 AVCHAPTFKEYWPSIEDLFKK--YVIIAHNANFDLSVLSKTLLHYGLKVPPIKYVCTYNE 225

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
              +     +  L S+ + + I + +     +           IK           F+ +
Sbjct: 226 SRNKFPQLGKYSLKSMAEYFDIPLENHHDAKSDAQVCSSIFEAIKSQNYMFTPK-EFEFH 284

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213
           E++  +       N+        L 
Sbjct: 285 EEKTSEFNISPATNVETFALPYSLP 309


>gi|296283456|ref|ZP_06861454.1| exonuclease, RNase T and DNA polymerase III [Citromicrobium
           bathyomarinum JL354]
          Length = 261

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 56/211 (26%), Gaps = 11/211 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT------FQVFLCPNGRKNSPEALKLHGI 65
            D+ETT LD     IIE+ A+EL+  S           +     P        +      
Sbjct: 16  VDVETTSLDPATGEIIEL-AIELVWISHEGEVEAQLGPWSWLNDPGEPLTPEISTITGLH 74

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+          + +                    D  +     +       + +    
Sbjct: 75  DDDLRGQAIDDRKVRALLGRADWLCAHNARFDVQWIDRRYPEFADKPWACSCSEIAWADL 134

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISH----RSKHGALLDSHLLSDVYIKMMVGGSQI 181
                 +    +++ L     R G  +        +     DS  +   + +++   +Q 
Sbjct: 135 GFEGRSQPFLLAQHGLFGRAHRAGDDVWSLLQLLQQRRPDPDSLQVRSHFARLLEHAAQP 194

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
           +     +   F  +++          R++  
Sbjct: 195 SVKLSASGAPFAAKDELKARGYRWNARERVW 225


>gi|54303407|ref|YP_133400.1| putative DNA polymerase III [Photobacterium profundum SS9]
 gi|46916837|emb|CAG23600.1| putative DNA polymerase III [Photobacterium profundum SS9]
          Length = 236

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 55/168 (32%), Gaps = 4/168 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
             +  D ETTGL+ + D+I+ IG V L  D  +   + ++++  +G     E+ +++ IT
Sbjct: 50  NFVAIDFETTGLNCQQDKILSIGVVNLTTDMIELASSEEIYIR-HGEFIKAESAQINEIT 108

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + L       +      +    +       N +        +                 
Sbjct: 109 PKQLHKGVDIDTAIDWLLERIQGKIVLAHCANIEKQFIESYLKDTYQLNTFPCYFIDTLQ 168

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYI 172
           L         S    +          +  +   H A  D+   +++++
Sbjct: 169 LEKHHSYAGKSNQHTSYQLDDLRQYHNLPAYYSHSAASDAVACAELFL 216


>gi|119944727|ref|YP_942407.1| DNA polymerase III subunit epsilon [Psychromonas ingrahamii 37]
 gi|119863331|gb|ABM02808.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas
           ingrahamii 37]
          Length = 238

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +  D ETTGLDS+ + II IG V          +  + ++ P         +   
Sbjct: 48  FVALDFETTGLDSQQNGIISIGLVPFNLQRIFCRKVKEWYINPQDNLQENSIIIHG 103


>gi|71901523|ref|ZP_00683608.1| Ribonuclease T [Xylella fastidiosa Ann-1]
 gi|71728710|gb|EAO30856.1| Ribonuclease T [Xylella fastidiosa Ann-1]
          Length = 210

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 62/183 (33%), Gaps = 13/183 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +  +  ++EI  + +                 + P  G    P++L++ G
Sbjct: 23  VVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTDIDPKSLEVTG 82

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 +        +  Q A  + HNA FD+ F+NA + R    
Sbjct: 83  IILDHPFRFAKEEKLALEHIFTPVRATMKKYKCQRAILVGHNAHFDLNFLNAAVTRTAYK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                +     ++        +  L    +  G+  +    H A+ D+   + ++  +  
Sbjct: 143 RNPFHQFSVFDTVTLAGMAYGQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFCTITN 202

Query: 177 GGS 179
              
Sbjct: 203 IWP 205


>gi|256822949|ref|YP_003146912.1| ribonuclease T [Kangiella koreensis DSM 16069]
 gi|256796488|gb|ACV27144.1| ribonuclease T [Kangiella koreensis DSM 16069]
          Length = 200

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 72/201 (35%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMRK-------IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLC 49
           MI  + M++       ++ D+ET G ++  D ++E+ AV          +   ++   + 
Sbjct: 1   MINLS-MKERFRGFFPVIIDVETGGFNAATDALLELAAVTTGFNEQGKLEIKNSYHFNVE 59

Query: 50  P-NGRKNSPEALKLHGITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK 100
           P  G     +AL   GI  +          K   S                   + HN+ 
Sbjct: 60  PFEGANIEQKALDFTGIDPDNPLRGAISEHKALKSLFKDLRTEQKDAECNRCVLVGHNSW 119

Query: 101 FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
           FD+ F+NA  +R++             + +          L   C   GI  S +  H A
Sbjct: 120 FDLSFLNAASERVDIKRNPFHPFTSFDTASLSALMLGHTVLAQACDLAGIEFSQKEAHSA 179

Query: 161 LLDSHLLSDVYIKMMVGGSQI 181
           L D+   ++++  ++   +Q 
Sbjct: 180 LYDATKTAELFCLLVNRANQF 200


>gi|15838737|ref|NP_299425.1| ribonuclease T [Xylella fastidiosa 9a5c]
 gi|24638168|sp|Q9PBJ8|RNT_XYLFA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|9107281|gb|AAF84945.1|AE004029_5 ribonuclease T [Xylella fastidiosa 9a5c]
          Length = 211

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 62/183 (33%), Gaps = 13/183 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +  +  ++EI  + +                 + P  G    P++L++ G
Sbjct: 24  VVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTDIDPKSLEVTG 83

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 +        +  Q A  + HNA FD+ F+NA + R    
Sbjct: 84  IILDHPFRFAKEEKLALEHIFTPVRATMKKYKCQRAILVGHNAHFDLNFLNAAVTRTAYK 143

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                +     ++        +  L    +  G+  +    H A+ D+   + ++  +  
Sbjct: 144 RNPFHQFSVFDTVTLAGMAYGQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFCTITN 203

Query: 177 GGS 179
              
Sbjct: 204 TWP 206


>gi|54309681|ref|YP_130701.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9]
 gi|46914119|emb|CAG20899.1| putative DNA polymerase III, epsilon subunit [Photobacterium
           profundum SS9]
          Length = 239

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL++K D II IG V   L+    NR     + P  + N    +  +   +
Sbjct: 49  FVAMDFETTGLNAKKDGIITIGLVPFTLNRVYINRAQHWTVRPRQKLNEQSVVIHNITHN 108


>gi|301155716|emb|CBW15184.1| ribonuclease T (RNase T) [Haemophilus parainfluenzae T3T1]
          Length = 229

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G D+K D ++E+ A+ L        + ++     + P  G   +PE+LK +G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGNLQPDQKCHFHIEPFEGANINPESLKFNG 82

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +          Q +  +AHNA FD  F+ A  +R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRGQKDAECQRSIIVAHNAAFDQSFVMAAAERTGVK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    +  H AL D+   ++++  M+ 
Sbjct: 143 RNPFHPFGMFDTATLAGFMFGQTVLVKACQAAKIPFDGKQAHSALYDTERTAELFCYMVN 202

Query: 177 GGSQIN 182
               + 
Sbjct: 203 HLKDLG 208


>gi|226330322|ref|ZP_03805840.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198]
 gi|225201117|gb|EEG83471.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198]
          Length = 212

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      + K + T    + P  G    P AL+  G
Sbjct: 20  VVIDVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVEPFEGANLEPAALEFTG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +     +   A  +AHNA FD  F+ A  +R    
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKMVRKGMKDADCNRAIIVAHNANFDHSFVMAAAERAGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI    +  HGAL D++  S ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTILAKACITAGIPFDSKLAHGALYDTNRTSLLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKKLG 205


>gi|296273686|ref|YP_003656317.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM
           7299]
 gi|296097860|gb|ADG93810.1| DNA polymerase III, epsilon subunit [Arcobacter nitrofigilis DSM
           7299]
          Length = 279

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 79/210 (37%), Gaps = 12/210 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIET G +    ++IEIGAV+L +      +++  +    +   P   ++  IT   L
Sbjct: 81  IVDIETNGSNVNKGQVIEIGAVKLKNGEII-DSYESLV--YAKDVPPYIQEVTNITPSML 137

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD P   ++  EF      ++  ++AH+ KFD  FI+   ++ N   L   ++       
Sbjct: 138 KDAPVLKTVLEEF--KIFLEDDVFVAHDIKFDYRFISESFKKYNLGELHNRKLCTIDLSK 195

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R               +  + I   ++H A  D+   + +  + +    +     +    
Sbjct: 196 RTIEAQRYGLDF---LKDLLHIDIDTQHRAYSDALSTTYILKESLSKLPEKILTAEDLIA 252

Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
               +      N    +  +      T++E
Sbjct: 253 FSKSDNIINSKNNQAKQNRENK----TEKE 278


>gi|114776398|ref|ZP_01451443.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans
          PV-1]
 gi|114553228|gb|EAU55626.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans
          PV-1]
          Length = 310

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
          V D ETTGLD+  D IIE+G V     + + R ++V    +G ++ 
Sbjct: 41 VIDTETTGLDTTADTIIELGFVAFSYDAGSGRIYEVLHNYDGFEDP 86


>gi|119896359|ref|YP_931572.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
 gi|119668772|emb|CAL92685.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 231

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTG+  +   R  EI  V + +    +R +Q  +   G     E   L GIT+
Sbjct: 31  YAVIDFETTGMAPEHGARPTEIAVVLVRNGCVIDR-YQSLMN-AGVHVPYEIQALTGITN 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
             ++  P  + + ++  DF        +AHNA FD  F +
Sbjct: 89  AMVRAAPPLAQVMAQAADFVGS--HALVAHNAAFDRKFWD 126


>gi|326314849|ref|YP_004232521.1| DNA-directed DNA polymerase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323371685|gb|ADX43954.1| DNA-directed DNA polymerase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 222

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  E+  V + +    +R FQ  +   G    P  ++L GIT
Sbjct: 5   RIAVIDFETTGMTPSQGARATEVAIVLMEEGRPVDR-FQSLMK-TGAWLPPFIVQLTGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
              L   P   S+  E   F  +      AHNA FD  F 
Sbjct: 63  PAMLDTAPPAESVMREAARFVGDAPMV--AHNASFDSRFW 100


>gi|119504386|ref|ZP_01626466.1| ribonuclease T [marine gamma proteobacterium HTCC2080]
 gi|119459894|gb|EAW40989.1| ribonuclease T [marine gamma proteobacterium HTCC2080]
          Length = 216

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 70/201 (34%), Gaps = 20/201 (9%)

Query: 2   IRKNKMR-------KIVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP 50
           +   +MR        ++ D+ET G ++  D ++E+ A  + + D  +     T    + P
Sbjct: 4   MPDYRMRDRFRGFLPVIVDVETGGFNAATDALLEVAATLIHVDDRGEVVLGDTISFNVEP 63

Query: 51  -NGRKNSPEALKLHGITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
             G      AL+  GI  E                 +   +         A  + HNA F
Sbjct: 64  FEGANIEASALEFTGIDPENPLRAALPEAIALGDLFTRIRKEVRDTGCNRAILVGHNAHF 123

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           D GFIN+   R +             +            L   C+R GI  ++   H A 
Sbjct: 124 DAGFINSASLRCDIKRNPFHPFSHFDTATLAGLAFGHTVLAQACRRAGIEFNNSEAHSAA 183

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++    ++ 
Sbjct: 184 YDATKTAELFCCIVNQWQRLG 204


>gi|282852211|ref|ZP_06261563.1| putative DnaQ family exonuclease/DinG family helicase
          [Lactobacillus gasseri 224-1]
 gi|282556630|gb|EFB62240.1| putative DnaQ family exonuclease/DinG family helicase
          [Lactobacillus gasseri 224-1]
          Length = 937

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 3/92 (3%)

Query: 9  KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            V D+ETTG   ++ D II+ G   +       + +   + P+ R+       L  I++
Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKKRKVV-KIYSFLINPH-REIPQAVENLTHISN 67

Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
            +     F+    +               N 
Sbjct: 68 RDVAQARDFNYYAPKIRKILENTIFVAHNVNF 99


>gi|260773225|ref|ZP_05882141.1| ribonuclease T [Vibrio metschnikovii CIP 69.14]
 gi|260612364|gb|EEX37567.1| ribonuclease T [Vibrio metschnikovii CIP 69.14]
          Length = 218

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++EI A+ L            T    + P  G      AL+ +G
Sbjct: 20  VVIDVETAGFNPQTDALLEICAITLCMDEQGDLHPASTLHFHIEPFEGANIEKAALEFNG 79

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                     +     +   A  +AHNA FD GF+ A  +R   
Sbjct: 80  IHDPFSALRGAVTEEYALKEIYKQVRKEQKAADCSRAIIVAHNASFDHGFVMAANERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         + A       +  L   CK  G+   +R  H AL D+   + ++  ++
Sbjct: 140 KRVPFHPFATFDTAALSGLAYGQTVLAKACKAAGMEFDNREAHSALYDTQQTAALFCGII 199

Query: 176 VGGSQIN 182
                + 
Sbjct: 200 NKWKALG 206


>gi|229593001|ref|YP_002875120.1| putative DNA poymerase [Pseudomonas fluorescens SBW25]
 gi|229364867|emb|CAY52927.1| putative DNA poymerase [Pseudomonas fluorescens SBW25]
          Length = 235

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 64/193 (33%), Gaps = 6/193 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65
           R +V D+ET+GL+   D+++ IGAV + D +   ++ F+        + +    +   G 
Sbjct: 40  RWVVLDLETSGLNLNRDQVLSIGAVVIEDGAVDFSQLFERTLQRAETKLSPSVLIHGLGP 99

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +       P  + +           ++  +A +A FD   +   L+      L    +  
Sbjct: 100 SAIAAGSDPVEALLDFMA----FVGDSPLLAFHAPFDQHMLCRALKDSLGYRLAHPFLDV 155

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                     +   +           +    +H A  D+   +++ + +       +   
Sbjct: 156 ADIAPLLCPQAHIREAGLDDWINHFNLHVGERHHASADALATAELMLILFSRARAQHIDT 215

Query: 186 KTNEDRFFKEEKK 198
                    + K+
Sbjct: 216 PQALQERLSQWKR 228


>gi|71276282|ref|ZP_00652560.1| Ribonuclease T [Xylella fastidiosa Dixon]
 gi|71898489|ref|ZP_00680661.1| Ribonuclease T [Xylella fastidiosa Ann-1]
 gi|182681822|ref|YP_001829982.1| ribonuclease T [Xylella fastidiosa M23]
 gi|71162890|gb|EAO12614.1| Ribonuclease T [Xylella fastidiosa Dixon]
 gi|71731802|gb|EAO33861.1| Ribonuclease T [Xylella fastidiosa Ann-1]
 gi|182631932|gb|ACB92708.1| ribonuclease T [Xylella fastidiosa M23]
          Length = 210

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 62/183 (33%), Gaps = 13/183 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +  +  ++EI  + +                 + P  G    P++L++ G
Sbjct: 23  VVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTDIDPKSLEVTG 82

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 +        +  Q A  + HNA FD+ F+NA + R    
Sbjct: 83  IILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTAYK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                +     ++        +  L    +  G+  +    H A+ D+   + ++  +  
Sbjct: 143 RNPFHQFSVFDTVTLAGMAYGQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFCTITN 202

Query: 177 GGS 179
              
Sbjct: 203 IWP 205


>gi|307823995|ref|ZP_07654222.1| ribonuclease T [Methylobacter tundripaludum SV96]
 gi|307734779|gb|EFO05629.1| ribonuclease T [Methylobacter tundripaludum SV96]
          Length = 207

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 15/186 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
           +V DIET G + K + ++EI AV +      D   T R +   + P    +    ALK +
Sbjct: 18  VVVDIETAGFNPKKNALLEIAAVIVELNSNSDLEITER-YTTHVIPFKNAELDEAALKFN 76

Query: 64  GITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           GI                        E     N   A  + HN  FD+GF+NA +QR   
Sbjct: 77  GIDPHHPFRMAIEEKDALHMLFKPIKEAVKRNNCTRAILVGHNPAFDIGFLNAAIQRTQI 136

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                       +         +  L  + +  G+   +   H AL D+   ++++  ++
Sbjct: 137 KRSPFHPFSTFDTATLGGLVYQQTVLAKIAQTAGLDWDNEKAHSALYDAEKTAELFCMIV 196

Query: 176 VGGSQI 181
               Q+
Sbjct: 197 NRWKQL 202


>gi|170730478|ref|YP_001775911.1| ribonuclease T [Xylella fastidiosa M12]
 gi|167965271|gb|ACA12281.1| ribonuclease T [Xylella fastidiosa M12]
          Length = 210

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 62/183 (33%), Gaps = 13/183 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +  +  ++EI  + +                 + P  G    P++L++ G
Sbjct: 23  VVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTDIDPKSLEVTG 82

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 +        +  Q A  + HNA FD+ F+NA + R    
Sbjct: 83  IILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTAYK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                +     ++        +  L    +  G+  +    H A+ D+   + ++  +  
Sbjct: 143 RNPFHQFSVFDTVTLAGMAYGQTVLARAVQAAGLDWNATDAHSAVYDAEKTAHLFCTITN 202

Query: 177 GGS 179
              
Sbjct: 203 IWP 205


>gi|187251744|ref|YP_001876226.1| DNA polymerase III subunit epsilon [Elusimicrobium minutum Pei191]
 gi|186971904|gb|ACC98889.1| DNA polymerase III, epsilon subunit [Elusimicrobium minutum Pei191]
          Length = 201

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 10/175 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGI 65
           +    D ETTGL      R+ EI  +   + +   ++ +   + P     S E + +HGI
Sbjct: 12  KFAFLDTETTGLSPYDGARLCEIAVIT--NGALIAKSEYGTIINP-RCVISQEVINIHGI 68

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+E     P F  I         +  +  + HNA FD+ F+ AE  R        + I+D
Sbjct: 69  TNEMAAQAPYFEDIAPLLIGLLTD--SVIVCHNADFDIPFLAAEFARCGLRMP-QTVILD 125

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           TL  AR+     +N+L  +    G++  +   H A+ D+ +   V+   +    Q
Sbjct: 126 TLKFARKNGNFKKNNLGFIVSELGLS--NEGWHRAMADAKMTEKVFYHFLAAFKQ 178


>gi|332667991|ref|YP_004450779.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332336805|gb|AEE53906.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 180

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 6/179 (3%)

Query: 7   MRKIVFDIETT---GLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALK 61
           M  I+FD+E T   G        +IEIGAV +  Y +    F   + P      S    +
Sbjct: 1   MNFIIFDLEATCWEGRPPSKVQEVIEIGAVLMNGYGEVEAEFSRMVRPILNPRLSAYCQE 60

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDF-FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           L  I    +     F  +   F D+         +      D   +  + Q  + +    
Sbjct: 61  LTNIKQTEVDRASIFPVVVESFQDWGLMLDEDYILCSWGGMDKKLLLQDCQLHDIEDEWV 120

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I+            R                  +H AL D+  L+ +++K +    
Sbjct: 121 DAHINIKHQYMELKRMRRPKGLRASVEAEGFDFTGPQHRALADAQNLAKIFLKYLDMWQ 179


>gi|325102919|ref|YP_004272573.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
 gi|324971767|gb|ADY50751.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
          Length = 1454

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 19/230 (8%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R I+I      +           + P+G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPITDVDNWPRCIQIAWQLHDEMGNLIEHQDYLISPDGFDIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----- 113
           A ++HGI+ +  +++        + ++    +    +  N  FD+  + AE  R      
Sbjct: 62  AERIHGISTDLAREQGVPLLEILDKFNEALSKTKFVVGQNIGFDINIMGAEFHRYGVESA 121

Query: 114 ----NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                          + L +   +    +    +    Y   +     H A  D    + 
Sbjct: 122 LSKLPVLDTCTEITANLLQLPGGRGGRFKLPTLTELHEYLFNVPFAEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +++++          + +   F K ++     I  L          +  
Sbjct: 182 CFLELIKREVFTVEELQVDTTYFLKFQEYNAGIIQPLGLQHVNLKEASDA 231


>gi|312870744|ref|ZP_07730851.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           3008A-a]
 gi|312873738|ref|ZP_07733783.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           2052A-d]
 gi|329919615|ref|ZP_08276604.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners SPIN
           1401G]
 gi|311090736|gb|EFQ49135.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           2052A-d]
 gi|311093756|gb|EFQ52093.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           3008A-a]
 gi|328937420|gb|EGG33842.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners SPIN
           1401G]
          Length = 299

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           I  N    ++ D+ETTGLD  N+ IIEIGA+++         +   + 
Sbjct: 124 IDTNTKPYVIIDLETTGLDYINNNIIEIGAIKIAKNI---EEYSCIVK 168


>gi|220904848|ref|YP_002480160.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869147|gb|ACL49482.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 176

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 10/165 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET+G          +G   + D   T   F   + P   +      ++HG+T   
Sbjct: 10  VAIDFETSG--YAAHSACAVGLARIEDGRVT-EQFYSLVRPPSSRV--LFTEIHGLTWPM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LK+ P F        + F +     +AHNA FD   + A  +            + TL  
Sbjct: 65  LKNAPVF-GDVWPQMESFMKGAGVLLAHNASFDRRVLLACCREAGAGVP-EQHFLCTLKG 122

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ARR  P     LN +C+ +G        H A  D+   ++VY+ +
Sbjct: 123 ARRSLPLPSKKLNHVCEHFG---IALEHHHAGSDAAACAEVYLHL 164


>gi|78777804|ref|YP_394119.1| DNA polymerase III subunit epsilon [Sulfurimonas denitrificans DSM
           1251]
 gi|78498344|gb|ABB44884.1| Exonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 266

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 78/200 (39%), Gaps = 15/200 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIET G   +  +IIEI A+++ +     R F+  +     + +P   ++ GI+    
Sbjct: 73  IVDIETNGSKIEKHQIIEIAALKVKNGLVVER-FESLV--ECHEINPHITEITGISTNET 129

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P+   +  +F  F  +  A +IAH+ KFD  FI+  +Q+I   PL            
Sbjct: 130 IDAPNLKKVMYDFRTFLGD--AVFIAHDVKFDYKFISLSMQKIGLPPLLNRS--LCSLSL 185

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
             +   S     S            + H A+ D     +++        +++      E 
Sbjct: 186 AERTIESYRYALSYLNTIFNLHPEATHHRAMSDVITTYELF--------KLSLNSVDKEV 237

Query: 191 RFFKEEKKTVPNISLLKRDK 210
           +  ++  +       LKR K
Sbjct: 238 KTVEDLIRFSKEAKRLKRPK 257


>gi|294792957|ref|ZP_06758103.1| exonuclease [Veillonella sp. 6_1_27]
 gi|294455902|gb|EFG24266.1| exonuclease [Veillonella sp. 6_1_27]
          Length = 209

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 63/165 (38%), Gaps = 7/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +   +    +  + + D   T + +   + P       E +++HGI  +
Sbjct: 4   FVALDFET--ANKFKNSACSLAVITVKDGQITKKAY-SLIKPPFMSFDDECIEIHGIQPK 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  + +F  +++  ++  + +    +AHNAKFD+  + A L        +         
Sbjct: 61  DVLHEKTFDQLWNAIYEN-HLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKL 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                     + LN++    G+       H AL D+   + V ++
Sbjct: 120 SRAVWPDLVNHKLNTMAAYIGVEF---KHHYALDDAETCAKVVLE 161


>gi|257870106|ref|ZP_05649759.1| exonuclease [Enterococcus gallinarum EG2]
 gi|257804270|gb|EEV33092.1| exonuclease [Enterococcus gallinarum EG2]
          Length = 180

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 67/169 (39%), Gaps = 7/169 (4%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
             M  I  D ET   + +      +  V + D       +   + P       + +++HG
Sbjct: 2   KAMNFIAMDFET--ANYQKHSACSLALVMVRDSKIVGE-YYTLIQPET-DFFWKNIQIHG 57

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I  E + + P F  I+ +   ++N  +   +AHNA FD G +   L     +  +   + 
Sbjct: 58  IHPEDVVNAPKFPDIWKQIQQYYNLNSLI-VAHNAGFDTGVLAGCLDYYGIEQPNYLSLC 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              +  +       + LN++C++  I     + H AL DS   + + ++
Sbjct: 117 TVRTSRKLYPEFENHKLNTVCQQLQIP--LLNHHDALEDSRACAQILLR 163


>gi|312875182|ref|ZP_07735195.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           2053A-b]
 gi|311089289|gb|EFQ47720.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           2053A-b]
          Length = 299

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           I  N    ++ D+ETTGLD  N+ IIEIGA+++         +   + 
Sbjct: 124 IDTNTKPYVIIDLETTGLDYINNNIIEIGAIKIAKNI---EEYSCIVK 168


>gi|83649371|ref|YP_437806.1| putative exonuclease [Hahella chejuensis KCTC 2396]
 gi|83637414|gb|ABC33381.1| putative exonuclease [Hahella chejuensis KCTC 2396]
          Length = 189

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 8/123 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGLD     +IE+  +++         F   + P       EA  +HGIT E 
Sbjct: 19  VVLDTETTGLD-DQAEVIEVSVMDMRGKVL----FDQLVRP-LNPVPDEAADIHGITSES 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L DKP+F  ++       + +     A+NA FD   +           ++        + 
Sbjct: 73  LADKPNFPDVYHSLKRVISGKTVV--AYNADFDSRLLMQTCAAYGLPVIEADWQCAMNAY 130

Query: 130 ARR 132
            R 
Sbjct: 131 TRY 133


>gi|313206116|ref|YP_004045293.1| DNA polymerase iii, alpha subunit [Riemerella anatipestifer DSM
           15868]
 gi|312445432|gb|ADQ81787.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer DSM
           15868]
 gi|315022923|gb|EFT35946.1| DNA polymerase III alpha subunit [Riemerella anatipestifer RA-YM]
 gi|325336439|gb|ADZ12713.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer RA-GD]
          Length = 1550

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 71/225 (31%), Gaps = 22/225 (9%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL        +D     R+++I      +           + P G      
Sbjct: 2   YLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDEEGNLVENQDYIIKPEGYDIPFN 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A ++HGI+ +   ++        E +    ++      HN +FD   + AE  R + + +
Sbjct: 62  ATRIHGISTKMAHEQGRDLVEILEEFKEVLKKTKIVAGHNIEFDYNIVGAEFYRKSIENV 121

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCK--------RYGITISHRSKHGALLDSHLLSDV 170
                          +       N   K                   H A  D +  + V
Sbjct: 122 LEKIPSADTMALGTDYCQLGGGRNGKYKPPKLEELYEKLYGEKFDEAHNAAADVNATAQV 181

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
           + +MM  G       K +E++    ++     I    R   +  R
Sbjct: 182 FFEMMRVGIIPAETLKISEEQLKVYQENHPSPI----RPFAIVIR 222


>gi|221632413|ref|YP_002521634.1| putative DNA polymerase III, epsilon chain [Thermomicrobium roseum
           DSM 5159]
 gi|221156357|gb|ACM05484.1| putative DNA polymerase III, epsilon chain (EC ) [Thermomicrobium
           roseum DSM 5159]
          Length = 190

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 7/137 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTG+ S+ D++IE+  ++           +  + P+   +              
Sbjct: 21  VILDTETTGIRSQ-DQVIELAVLDTHGNVL----LETLVKPSCPIDPAALRVHGLSEAHL 75

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                    +         ++    + +NA FD   I    +       D S        
Sbjct: 76  AHAPE--WPVVYRELRVIFDRARLIVTYNAPFDRRLIEQTCRCYGLSLPDLSWDCAMRRF 133

Query: 130 ARRKHPSSRNDLNSLCK 146
           A    P       +  +
Sbjct: 134 AEYAGPPPTESWRNYHR 150


>gi|115452527|ref|NP_001049864.1| Os03g0301400 [Oryza sativa Japonica Group]
 gi|108707691|gb|ABF95486.1| exonuclease family protein, expressed [Oryza sativa Japonica Group]
 gi|113548335|dbj|BAF11778.1| Os03g0301400 [Oryza sativa Japonica Group]
 gi|215678888|dbj|BAG95325.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 313

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 3/84 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTG   + +RIIE    +L+     N T Q  + P     +     +        
Sbjct: 115 VFDIETTGFSRRYERIIEFAVRDLMGGK--NSTIQTLINPEREIKNAYVHGISSSMVCKP 172

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW 94
            D P F         +   +    
Sbjct: 173 -DIPRFREFIPLLLQYVLSRQMAD 195


>gi|70732717|ref|YP_262480.1| exonuclease [Pseudomonas fluorescens Pf-5]
 gi|68347016|gb|AAY94622.1| exonuclease [Pseudomonas fluorescens Pf-5]
          Length = 203

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 5/102 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+    + R  EI  V L       R +Q  +   G +      +L GI+
Sbjct: 3   RIAVIDFETTGISPSSSCRATEIAVVILEQGRIVER-YQSLMN-AGVRVPAFIEQLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           +  L+  P    + +E  +F        +AHNA FD  F + 
Sbjct: 61  NAMLRSAPPAEQVMNEVNEFV--GITPLLAHNAAFDQKFWDF 100


>gi|330505789|ref|YP_004382658.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
 gi|328920075|gb|AEB60906.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
          Length = 235

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 5/142 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+ETTGLD     I+ +G V +     +        + P   + S E++  H IT  
Sbjct: 46  VALDVETTGLDPHQHAIVSLGLVPMDLQRIRCAEARYWVVKPTS-ELSAESVTFHHITHS 104

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P  +S+  E  +    +       + +        +  R++        IIDT+ 
Sbjct: 105 DIRHAPRLASVLDELLEALAGKVVVA---HYRKIERNFLDQALRLHLGEGLMFPIIDTME 161

Query: 129 IARRKHPSSRNDLNSLCKRYGI 150
           +  R HP          +    
Sbjct: 162 LEARLHPRRSISWWDRLRGRQP 183


>gi|313144535|ref|ZP_07806728.1| DNA polymerase III [Helicobacter cinaedi CCUG 18818]
 gi|313129566|gb|EFR47183.1| DNA polymerase III [Helicobacter cinaedi CCUG 18818]
          Length = 254

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIET G   ++  IIEIGA+ + +      +F+ ++            +L GI  E
Sbjct: 73  FVFVDIETNGAKPQSSEIIEIGALRVKNSQIL-ESFESYV--YAPFVPENITELTGIRQE 129

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
            +++ P    +   F +F       ++AHN  FD  F++  L++ 
Sbjct: 130 DIQNAPQSKEVLRAFREFLGG--GVFVAHNVNFDFSFLDYHLRQN 172


>gi|224438091|ref|ZP_03659030.1| DNA polymerase III subunit epsilon [Helicobacter cinaedi CCUG
           18818]
          Length = 233

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIET G   ++  IIEIGA+ + +      +F+ ++            +L GI  E
Sbjct: 52  FVFVDIETNGAKPQSSEIIEIGALRVKNSQIL-ESFESYV--YAPFVPENITELTGIRQE 108

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
            +++ P    +   F +F       ++AHN  FD  F++  L++ 
Sbjct: 109 DIQNAPQSKEVLRAFREFLGG--GVFVAHNVNFDFSFLDYHLRQN 151


>gi|282849129|ref|ZP_06258514.1| DNA polymerase III subunit epsilon domain protein [Veillonella
           parvula ATCC 17745]
 gi|282580833|gb|EFB86231.1| DNA polymerase III subunit epsilon domain protein [Veillonella
           parvula ATCC 17745]
          Length = 209

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 63/165 (38%), Gaps = 7/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +   +    +  + + D   T + +   + P       E +++HGI  +
Sbjct: 4   FVALDFET--ANKFKNSACSLAVITVKDGQITKKAY-SLIKPPFMSFDDECIEIHGIQPK 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  + +F  +++  ++  + +    +AHNAKFD+  + A L        +         
Sbjct: 61  DVLHEKTFDQLWNAIYEN-HLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKL 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                     + LN++    G+       H AL D+   + V ++
Sbjct: 120 SRAVWPDLVNHKLNTMAAYIGVEF---KHHYALDDAETCAKVVLE 161


>gi|310640616|ref|YP_003945374.1| exonuclease rnase t and DNA polymerase iii [Paenibacillus polymyxa
           SC2]
 gi|309245566|gb|ADO55133.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus polymyxa
           SC2]
          Length = 223

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 83/239 (34%), Gaps = 28/239 (11%)

Query: 7   MRKIVFDIE-TTGLDSK-NDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRK-NSPEAL 60
           M+ I++D+E T   +++ +  II+IGAV+++   D      TF  F+ P+ R   S + +
Sbjct: 1   MQYIIYDLEFTVSRNARYSSEIIDIGAVKVIHGEDGLFVADTFHSFVRPSNRPVISTDTV 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +  GIT   +   P F     +F  +   +      A         ++            
Sbjct: 61  QFTGITQRDIDAAPLFPEAVKQFIAWLGTDSTYYLCAWGPDDRQKLVSHCRTHHVDLGWI 120

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCK--RYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +       I+R    + +    SL +            +H AL D+   + V+   M  
Sbjct: 121 HNTNDIQKQISRLFSSNGKYRQLSLSQALELCNIEFDGQQHRALDDAVNTAQVF---MHH 177

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT--IQTLGKN 234
             ++       +D                 R   L     +EE +++     +  L K+
Sbjct: 178 FDRLTLVHNAADDEES--------------RGSKLVYSSPEEEQEQYSPFGNLANLFKD 222


>gi|291617286|ref|YP_003520028.1| Rnt [Pantoea ananatis LMG 20103]
 gi|291152316|gb|ADD76900.1| Rnt [Pantoea ananatis LMG 20103]
 gi|327393738|dbj|BAK11160.1| ribonuclease T Rnt [Pantoea ananatis AJ13355]
          Length = 223

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++E+ A+  ++ D      ++T    + P  G    PEAL   G
Sbjct: 20  VVIDVETAGFNAQTDALLEVAAITLKMDDEGWLHHDQTLHFHVEPFVGALLHPEALAFTG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +         A  +AHNA FD+ F+NA  +R +  
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKLVRKGIKDTGCNRAIMVAHNATFDLNFMNAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   CK  G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACKAAGMEFDSSQAHSALYDTQQTATLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|262190277|ref|ZP_06048547.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|262033843|gb|EEY52313.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
          Length = 233

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 52/184 (28%), Gaps = 16/184 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57
           +  D ETTGL+++ D I+ IG V         ++     + P           +G  +S 
Sbjct: 45  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEEESIVFHGITHSE 104

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                          +     I    +          I+ N   +            +  
Sbjct: 105 LQHAQAPEQVLKELLEALHGKIVVVHFRHIERDFLRQISLNIWGEAIEFPVLDTLEIERQ 164

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   +      I RR  PS R        R    +   S H AL D+   ++++      
Sbjct: 165 LLDKQRSLWQRITRRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 220

Query: 178 GSQI 181
               
Sbjct: 221 HLPP 224


>gi|164688494|ref|ZP_02212522.1| hypothetical protein CLOBAR_02139 [Clostridium bartlettii DSM
           16795]
 gi|164602907|gb|EDQ96372.1| hypothetical protein CLOBAR_02139 [Clostridium bartlettii DSM
           16795]
          Length = 252

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 21/234 (8%)

Query: 7   MRKIVFDIETTGLDSKNDR--------------IIEIGAVELLDYSKTNRTFQVFLCPN- 51
           M  I+FD+E    +   DR              II+IGA++L        TF  ++    
Sbjct: 1   MNYIIFDLE---FNQGFDRLNNKTVSNAKCPFEIIQIGAIKLDSELNILDTFSSYIKSEI 57

Query: 52  GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH--NAKFDVGFINAE 109
            +   P   K+ GIT+  LK+ PSF  ++ +F  F   +N+ +     N   ++      
Sbjct: 58  YKDIHPFVKKMTGITNSNLKNAPSFKEVYEDFLKFIGIKNSIFGTWGTNDLKELHRNILF 117

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                ++       I   +     +P  +                +  H AL D++  + 
Sbjct: 118 YNLSLENVPTMYINIQQHASKFFNNPVGKCIGLQNAISILQLEQDKQYHNALNDAYYTAL 177

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR-ITKEELD 222
           V+ K+     +          +  ++++  +   +L    K +  R ++KE+  
Sbjct: 178 VFQKINNKNIKAETYTYNLSKKEKQKQRLKIDYDNLFAEFKTILKRELSKEDKK 231


>gi|269965971|ref|ZP_06180063.1| ribonuclease T [Vibrio alginolyticus 40B]
 gi|269829367|gb|EEZ83609.1| ribonuclease T [Vibrio alginolyticus 40B]
          Length = 214

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 14/195 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV  ++ ++       T    + P  G     EAL+ +G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLKMDEHGVLHPASTIHFHVEPFEGANLEKEALEFNG 79

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F   +              +  +     +   A  +AHNA FD+GF+NA  +R   
Sbjct: 80  IRDPFSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLGFVNAANERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCGIV 199

Query: 176 VGGSQINFGFKTNED 190
                +      +E+
Sbjct: 200 NKWKALGGWPLVDEE 214


>gi|313893912|ref|ZP_07827478.1| putative DNA polymerase III, epsilon subunit [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313441476|gb|EFR59902.1| putative DNA polymerase III, epsilon subunit [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 209

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 63/165 (38%), Gaps = 7/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +   +    +  + + D   T + +   + P       E +++HGI  +
Sbjct: 4   FVALDFET--ANKFKNSACSLAVITVKDGQITKKAY-SLIKPPFMSFDDECIEIHGIQPK 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  + +F  +++  ++  + +    +AHNAKFD+  + A L        +         
Sbjct: 61  DVLHEKTFDQLWNAIYEN-HLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKL 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                     + LN++    G+       H AL D+   + + ++
Sbjct: 120 SRAVWPDLVNHKLNTMAAYMGVEF---KHHYALDDAETCAKIVLE 161


>gi|317050855|ref|YP_004111971.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
 gi|316945939|gb|ADU65415.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
          Length = 250

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             D ETTG D K   I+ IG V +     +        + P  +  S   +   
Sbjct: 62  ALDFETTGFDPKRHGIVSIGLVPMSLQRIRCAEARHWIVKPRVQLESQSIVVHG 115


>gi|317492115|ref|ZP_07950545.1| ribonuclease T [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919820|gb|EFV41149.1| ribonuclease T [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 218

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 70/199 (35%), Gaps = 13/199 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D+  + ++EI AV L      + + + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFDANTNALLEIAAVTLRMTDDGWLEPDETLHFHVEPFVGSVLVPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  E          +   +      +     +   A  +AHNA FD  F+ A  +R+   
Sbjct: 80  IDPENPLRGAVSEYEALHAIFKAVRKGIKEHDCNRAVIVAHNAHFDHSFVMAAAERVGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C    I       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACIAANIPFDSTQAHSALYDTEQTATLFCELVN 199

Query: 177 GGSQINFGFKTNEDRFFKE 195
              ++             E
Sbjct: 200 RWKRMGGWPLPANAEESAE 218


>gi|269102191|ref|ZP_06154888.1| ribonuclease T [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162089|gb|EEZ40585.1| ribonuclease T [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 221

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 75/202 (37%), Gaps = 14/202 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV  ++ D        T    + P  G     EAL+ +G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLKMDDDGWLHPATTLHFHVTPFEGAILHKEALEFNG 79

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F   +                 +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 80  IRDPFSPLRGAVSEDTALKEIFKQIRKEQKNADCSRAIMVAHNANFDHSFVMAAAERAKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                       + A       +  L   C+   I   ++  H AL D+   ++++ K++
Sbjct: 140 KRNPFHPFATFDTAALSGLALGQTVLAKACQTANIPFDNKEAHSALYDTERTAELFCKIV 199

Query: 176 VGGSQINFGFKTNEDRFFKEEK 197
                +      +++    +  
Sbjct: 200 NKWKALGGWPLVDDETEENQND 221


>gi|215405762|ref|ZP_03417943.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           02_1987]
 gi|215413638|ref|ZP_03422306.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           94_M4241A]
 gi|215448050|ref|ZP_03434802.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85]
 gi|289747550|ref|ZP_06506928.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           02_1987]
 gi|289759871|ref|ZP_06519249.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85]
 gi|294995379|ref|ZP_06801070.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 210]
 gi|298527188|ref|ZP_07014597.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis 94_M4241A]
 gi|289688078|gb|EFD55566.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           02_1987]
 gi|289715435|gb|EFD79447.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85]
 gi|298496982|gb|EFI32276.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis 94_M4241A]
 gi|326905550|gb|EGE52483.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           W-148]
          Length = 329

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 71/201 (35%), Gaps = 7/201 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D+P F+ I  E  D         +AHN  FD  F+ AE +    +      +       
Sbjct: 75  DDQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R +       L +L   +G+       H A  D  +L+ +    +    +++     +  
Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDVRVLTGILAAALESARELDVWLPVHPV 190

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
              +     V +  L      
Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211


>gi|260061966|ref|YP_003195046.1| DNA polymerase III subunit epsilon [Robiginitalea biformata
           HTCC2501]
 gi|88783528|gb|EAR14699.1| DNA polymerase III, epsilon subunit [Robiginitalea biformata
           HTCC2501]
          Length = 456

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG     +RI EI    +        ++   + P G +       L GIT   +
Sbjct: 4   VVDIETTGNGIYGNRITEIALFNIDQGR-IADSYSTLVNP-GCEIPAFITGLTGITTAMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
           ++ P FS I  +   F + +     + N  +
Sbjct: 62  RNAPDFSEIAPKIDAFSSGRVFVAHSVNFDY 92


>gi|215432688|ref|ZP_03430607.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           EAS054]
          Length = 347

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 7/201 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D+P F+ I  E  D         +AHN  FD  F+ AE +    +      +       
Sbjct: 75  DDQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R +       L +L   +G+       H A  D+ +L+ +    +    +++     +  
Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDARVLTGILAAALESARELDVWLPVHPV 190

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
              +     V +  L      
Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211


>gi|167999243|ref|XP_001752327.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696722|gb|EDQ83060.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1960

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 91/236 (38%), Gaps = 19/236 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDE 68
           IVFDIETTG      +I+E+   ++     +  T +  + P      +  A+        
Sbjct: 252 IVFDIETTGFLKPGSKIVELACRDIAGGDCS--TLETLVNPYQPVPIASTAVHKITSEMV 309

Query: 69  FLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSR 122
              D PS++ + + F DF         +   +AHN  +FDV FI  E    + +      
Sbjct: 310 NRDDIPSWTEVMTAFVDFVESRRIGNSDVILVAHNGRRFDVPFIMKECYECSMEIPSHWY 369

Query: 123 IIDTLSIARRKHPSSR-----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            IDT+ +A+             +L  L             H A +D  +L+ V+ K+++ 
Sbjct: 370 FIDTIDLAKAMLKKRFGKTKLYNLQFLYYDCYKLPRLEDAHRAGVDVDMLASVFGKLLM- 428

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE--ELDEHDKTIQTL 231
             ++        D+ FK     +    LL+ +   +T ++KE  E       +  +
Sbjct: 429 --ELEMPVSELLDQAFKASHIELKPDLLLRENNDRYTSLSKEVDETLLEQSMVDVI 482


>gi|76363558|sp|P0C0B7|DPO3_STRPY RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|9789541|gb|AAF98345.1| DNA polymerase III alpha chain [Streptococcus pyogenes]
          Length = 1465

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 6/168 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +L GITD+ L+ 
Sbjct: 431 DVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDKHLQG 488

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                ++   F DF  +  +  +AHNA FDVGF+NA  +R +   +    I         
Sbjct: 489 AKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEFARNL 546

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 547 YPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKDARE 592


>gi|219559793|ref|ZP_03538869.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T17]
 gi|289571955|ref|ZP_06452182.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T17]
 gi|289545709|gb|EFD49357.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T17]
          Length = 284

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 7/201 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D+P F+ I  E  D         +AHN  FD  F+ AE +    +      +       
Sbjct: 75  DDQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R +       L +L   +G+       H A  D+ +L+ +    +    +++     +  
Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDARVLTGILAAALESARELDVWLPVHPV 190

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
              +     V +  L      
Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211


>gi|188582299|ref|YP_001925744.1| DNA polymerase III subunit epsilon [Methylobacterium populi BJ001]
 gi|179345797|gb|ACB81209.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
          Length = 298

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 68/238 (28%), Gaps = 33/238 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSK-----TNRTFQVFLCPNGRKNSPEALKLHGIT 66
            D+ETTGLD + D IIE+                  +FQ    P     S          
Sbjct: 47  VDVETTGLDPQRDEIIELAMTPFNYGLDGTVFSVGDSFQGLRQP-----SEPITPEITAI 101

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                +  +   I       F    +  IAHNA FD  F+       +  P         
Sbjct: 102 TGITNEMVAGQVIDPAEVAKFAAPASLVIAHNAAFDRRFLERFSDVFSTKPW-------A 154

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI------------KM 174
            S+++    +   +   L            +H A+ D     ++              ++
Sbjct: 155 CSLSQIDWAAEGFEGAKLAYLAQAAGFFYDRHRAMHDCLATVELLAMRLPRSGVTGLSRL 214

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP----NISLLKRDKPLFTRITKEELDEHDKTI 228
           + G   + +        F  ++         N     + +  +  + + + +   + +
Sbjct: 215 LDGARTVAWRIWAENSPFDLKDVLKARGYRWNGDPGPQPRAWYIDVPEAQREAELRFL 272


>gi|311694884|gb|ADP97757.1| exonuclease RNase T and DNA polymerase III [marine bacterium HP15]
          Length = 190

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 53/169 (31%), Gaps = 10/169 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGL +  D I+EI  +     +         + P+   N   A  +HGIT   
Sbjct: 20  VIIDTETTGL-TDTDEIVEISVINCHGTTL----LDTLIRPSSEINPA-AQAVHGITLAE 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
             D P+F  +  +       +       +    +   +A  +      L P   + T + 
Sbjct: 74  TADAPTFDQVLPDLLRVIQGKTVVMYNSSYDARLIQQSAMKRGCRAPTLYPHCAMKTYAK 133

Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +        +        R        + H AL D      V   M
Sbjct: 134 FYGQWDDYRESWKWQSLDKAARQCGVTVDGNAHRALTDCFTTLGVIKAM 182


>gi|289755840|ref|ZP_06515218.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon
           [Mycobacterium tuberculosis EAS054]
 gi|289696427|gb|EFD63856.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon
           [Mycobacterium tuberculosis EAS054]
          Length = 330

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 7/201 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D+P F+ I  E  D         +AHN  FD  F+ AE +    +      +       
Sbjct: 75  DDQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R +       L +L   +G+       H A  D+ +L+ +    +    +++     +  
Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDARVLTGILAAALESARELDVWLPVHPV 190

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
              +     V +  L      
Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211


>gi|262393711|ref|YP_003285565.1| ribonuclease T [Vibrio sp. Ex25]
 gi|262337305|gb|ACY51100.1| ribonuclease T [Vibrio sp. Ex25]
          Length = 214

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 77/195 (39%), Gaps = 14/195 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L    D       T    + P  G     EAL+ +G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLKMDEDGVLHPASTIHFHVEPFEGANLEKEALEFNG 79

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D +   +              +  +     +   A  +AHNA FD+GF+NA  +R   
Sbjct: 80  IRDPYSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLGFVNAANERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCGIV 199

Query: 176 VGGSQINFGFKTNED 190
                +      +E+
Sbjct: 200 NKWKALGGWPLVDEE 214


>gi|260198755|ref|ZP_05766246.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T46]
 gi|289441146|ref|ZP_06430890.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T46]
 gi|289414065|gb|EFD11305.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T46]
          Length = 319

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 7/201 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D+P F+ I  E  D         +AHN  FD  F+ AE +    +      +       
Sbjct: 75  DDQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R +       L +L   +G+       H A  D+ +L+ +    +    +++     +  
Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDARVLTGILAAALESARELDVWLPVHPV 190

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
              +     V +  L      
Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211


>gi|254558840|ref|YP_003065935.1| hypothetical protein METDI0201 [Methylobacterium extorquens DM4]
 gi|254266118|emb|CAX21870.1| hypothetical protein, putative exonuclease domain [Methylobacterium
           extorquens DM4]
          Length = 297

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 72/211 (34%), Gaps = 8/211 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ET   + + D    +G   +       R     + P   + SP  +++HGI 
Sbjct: 1   MKVVAIDFET--ANERRDSACAVGLAWIEGGRVVRRE-SRLIRPPQLRFSPGNIRVHGIL 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P+F  + +EF    +      +AHNA FD+G + A L    +   D +     
Sbjct: 58  PADVRDAPTFPEVIAEFLPDLSG--GLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
               R     + + L    K  G        H A  D+   +++ +  +      +    
Sbjct: 116 QIARRVFPDPAGHGL---AKVAGRLGIRFEHHDAGEDAFACAEIALAALRETGAADIADL 172

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
                       T P   + +       R +
Sbjct: 173 ARGLGLTPIRALTTPRRDMTRSTSAKALRAS 203


>gi|269797470|ref|YP_003311370.1| exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM
           2008]
 gi|269094099|gb|ACZ24090.1| Exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM
           2008]
          Length = 209

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 63/165 (38%), Gaps = 7/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +   +    +  + + D   T + +   + P       E +++HGI  +
Sbjct: 4   FVALDFET--ANKFKNSACSLAVITVKDGQITKKAY-SLIKPPFMSFDDECIEIHGIQPK 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  + +F  +++  ++  + +    +AHNAKFD+  + A L        +         
Sbjct: 61  DVLHEKTFDQLWNAIYEN-HLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKL 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                     + LN++    G+       H AL D+   + V ++
Sbjct: 120 SRAVWPDLVNHKLNTMAAYIGVEF---KHHYALDDAETCAKVVLE 161


>gi|215424954|ref|ZP_03422873.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T92]
 gi|289748229|ref|ZP_06507607.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T92]
 gi|289688816|gb|EFD56245.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T92]
          Length = 329

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 7/201 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D+P F+ I  E  D         +AHN  FD  F+ AE +    +      +       
Sbjct: 75  DDQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R +       L +L   +G+       H A  D+ +L+ +    +    +++     +  
Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDARVLTGILAAALESARELDVWLPVHPV 190

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
              +     V +  L      
Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211


>gi|31794883|ref|NP_857376.1| DNA polymerase III subunit epsilon [Mycobacterium bovis AF2122/97]
 gi|121639627|ref|YP_979851.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224992123|ref|YP_002646812.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260184632|ref|ZP_05762106.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           CPHL_A]
 gi|289445310|ref|ZP_06435054.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           CPHL_A]
 gi|31620481|emb|CAD95924.1| PUTATIVE DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ [Mycobacterium
           bovis AF2122/97]
 gi|121495275|emb|CAL73761.1| Putative dna polymerase III (epsilon subunit) dnaQ [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|224775238|dbj|BAH28044.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289418268|gb|EFD15469.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           CPHL_A]
          Length = 329

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 7/201 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D+P F+ I  E  D         +AHN  FD  F+ AE +    +      +       
Sbjct: 75  DDQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R +       L +L   +G+       H A  D+ +L+ +    +    +++     +  
Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDARVLTGILAAALESARELDVWLPVHPV 190

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
              +     V +  L      
Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211


>gi|187932792|ref|YP_001886212.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str.
           Eklund 17B]
 gi|187720945|gb|ACD22166.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str.
           Eklund 17B]
          Length = 309

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 8/178 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D           + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIIEEV-HHLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  ++ +   +FN+     IAHNA FD+  +   L+  N +      I   
Sbjct: 58  PRMVQDELEFDKVWEKIKHYFNK--NLVIAHNASFDISVLRNTLELYNLEMPSFQYICTM 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                         LN++    G        H AL D+   S++ + +    +  +  
Sbjct: 116 KLSRNFYSNLDNARLNTVNNFLG---YEFKHHDALADAMACSNILLNICEELNTRDIN 170


>gi|83647725|ref|YP_436160.1| putative exonuclease [Hahella chejuensis KCTC 2396]
 gi|83635768|gb|ABC31735.1| putative exonuclease [Hahella chejuensis KCTC 2396]
          Length = 230

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 69/178 (38%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D+ETTGL+ K D +I IGAVE+ D S    ++F++ +  +    S   L      
Sbjct: 35  RWVAADVETTGLNIKKDVVIAIGAVEINDLSICLEQSFELLIDADTHLESDNILIHGLSQ 94

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRII 124
               +      +I S          A  +A +A FD   +  E +        L    + 
Sbjct: 95  QTLSQGAHPKEAIHSFLS---YAHGAALLAFHAPFDKAMLEKEARTHLGVSSRLPFYDVA 151

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + L     + PS    L+     +G+   +  +H A  D+   +++ +  +     + 
Sbjct: 152 EWLKALCPEAPSHLRSLDDWSHYFGL--YNDQRHHAACDAMAAAELALICLQKARSLG 207


>gi|322806628|emb|CBZ04197.1| putative DNA polymerase III epsilon chain [Clostridium botulinum
           H04402 065]
          Length = 253

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 69/207 (33%), Gaps = 15/207 (7%)

Query: 7   MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNS 56
           M  I+FD+E    +   +          II+IGA++L +   T  TF   + P      +
Sbjct: 1   MNYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSDLN 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAELQRIN 114
           P    L  +T + L    SF  ++ +F  F N+    +         ++       +   
Sbjct: 58  PFVKNLTNLTMDSLNKAKSFREVYKDFLKFLNKDRNIFCIWGMTDMKELFRNIVYYEFHT 117

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +        +   +     +P S N   S          +   H A  D+   ++V+ K+
Sbjct: 118 ESMPKEYINVQAYTGKYLNYPKSINVGLSNAVELFHITKNNDFHNAFNDAFYTAEVFKKI 177

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP 201
                +      TN    ++ +     
Sbjct: 178 YSEKIKTKIYKPTNNSTTYRTKNTKTK 204


>gi|308067866|ref|YP_003869471.1| Inhibitor of the KinA pathway to sporulation, exonuclease
           [Paenibacillus polymyxa E681]
 gi|305857145|gb|ADM68933.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Paenibacillus polymyxa E681]
          Length = 230

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 82/240 (34%), Gaps = 30/240 (12%)

Query: 7   MRKIVFDIE-TTGLDSK-NDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKN-SPEAL 60
           M+ I++D+E T   +++ +  II+IGAV++    D      TF  F+ P+ R   S + +
Sbjct: 8   MQYIIYDLEFTVSRNARYSSEIIDIGAVKVVQGDDGLYVADTFHSFVRPSNRPVLSTDTV 67

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +  GIT   +   P F     +F  +    ++ +       D         R +   L  
Sbjct: 68  QFTGITQRDIDAAPLFPEAVKQFVTWLGT-DSPYYLCAWGPDDRQKLVSHCRTHHVDLGW 126

Query: 121 SRIIDTLSIARRK----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
               + +     +    +   R    S             +H AL D+   + V+   M 
Sbjct: 127 IHNTNDIQKQISRLLSSNGKYRQLSLSQALELCNIDFDGQQHRALDDAVNTAQVF---MY 183

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT--IQTLGKN 234
              +I       +D                 R   L     +EE +++     +  L K+
Sbjct: 184 HFDRITLVHNAADDEES--------------RGSKLVYSSPEEEQEQYSPFGNLANLFKD 229


>gi|229521403|ref|ZP_04410822.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229341501|gb|EEO06504.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
          Length = 233

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 52/184 (28%), Gaps = 16/184 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57
           +  D ETTGL+++ D I+ IG V         N+     + P           +G  +S 
Sbjct: 45  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQARYWLVKPSQPLEDESIVFHGITHSE 104

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                          +     I    +          I+ N   +            +  
Sbjct: 105 LQHAQAPEQVLKELLEALHGKIVVVHFRHIERDFLRQISLNIWGEAIEFPVLDTLEIERQ 164

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   +      I RR  PS R        R    +   S H AL D+   ++++      
Sbjct: 165 LLDKQRSLWQRITRRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 220

Query: 178 GSQI 181
               
Sbjct: 221 HLPP 224


>gi|312884148|ref|ZP_07743860.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368196|gb|EFP95736.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 239

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 9   KIVF---DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++VF   D ETTGLDS +D II IG V   +D    N+     + P  ++   E++ +HG
Sbjct: 46  QVVFLAMDFETTGLDSNDDDIITIGTVPFTIDRIMINKAKHWTVKP-RKQLPEESVVIHG 104

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEW 94
           IT   + D P  S ++ E  +    +    
Sbjct: 105 ITHSDILDAPDLSGVYREVLEQMAGKVMVV 134


>gi|269213464|ref|ZP_05982022.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           cinerea ATCC 14685]
 gi|269146173|gb|EEZ72591.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           cinerea ATCC 14685]
          Length = 470

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVSGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          IAHN++FD  F+    +         S  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVLKG--CVLIAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192


>gi|284040095|ref|YP_003390025.1| DNA polymerase III subunit epsilon [Spirosoma linguale DSM 74]
 gi|283819388|gb|ADB41226.1| DNA polymerase III, epsilon subunit [Spirosoma linguale DSM 74]
          Length = 180

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 7/172 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + D+ETTG      R+ EI      D  +   +F   L P G    P    L GI+DE
Sbjct: 2   YCIVDVETTGGVKGPTRLTEIAIFR-HDGQQVVDSFHSLLNP-GCPIPPFIRHLTGISDE 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P+F+ + ++  +    Q+A ++AHN  FD  FI  EL  +  D L  +      +
Sbjct: 60  MVQDAPTFADVANDVLN--ITQDAIFVAHNVGFDFSFIQKELNWLGHDFLRRTLCT-VRT 116

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +         L  LC+     I    +H A  D+     ++  ++   +Q
Sbjct: 117 SRKLLPGYPSYSLGKLCRSL--EIPLNGRHRAQGDAAATVLLFEMLLKNDAQ 166


>gi|312881846|ref|ZP_07741617.1| ribonuclease T [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370492|gb|EFP97973.1| ribonuclease T [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 215

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++  D ++EI A+ L            T    + P  G     EAL+ +G
Sbjct: 20  VVIDVETAGFNADTDALLEICAITLTMDEFGNLIPASTLHFHVEPFEGANIEKEALEFNG 79

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F   +              +  +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 80  IRDPFSPLRGAVTEAEALKEIYKLVRKEQKAADCNRAIIVAHNATFDHNFVMAASERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   ++  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKTAGMEFDNKEAHSALYDTQKTAELFCGIV 199

Query: 176 VGGSQIN 182
                + 
Sbjct: 200 NKWKSLG 206


>gi|237731384|ref|ZP_04561865.1| ribonuclease T [Citrobacter sp. 30_2]
 gi|226906923|gb|EEH92841.1| ribonuclease T [Citrobacter sp. 30_2]
          Length = 215

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +   +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPNNPLRGAVSEYDALHAIFKMVRKGIKDSGCNRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLSLGQTVLSKACLAAGMEFDGNQAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|269838290|ref|YP_003320518.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787553|gb|ACZ39696.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
          Length = 335

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 53/176 (30%), Gaps = 16/176 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL      I++I  V+              + P       EA ++HGIT++ 
Sbjct: 25  VYLDTETTGLGPD-AEIVDIAVVDQAGRVL----LNSLVQP-RNPIPAEATRVHGITNKM 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT--- 126
           + + P       +      +     I +NA +D   I+   +R                 
Sbjct: 79  VMNAPE-WPEVYQELARIIQDYPTLIIYNAAYDRRLISQTCRRYGISVPRADWQCAMLNY 137

Query: 127 ----LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                    R      + L       G  +     H AL D+     V + M    
Sbjct: 138 AAYRGEWNARYGNHRWHTLEKAAIETGAPM--PPTHRALDDAQACRHVVLSMAGVA 191


>gi|156974590|ref|YP_001445497.1| hypothetical protein VIBHAR_02308 [Vibrio harveyi ATCC BAA-1116]
 gi|156526184|gb|ABU71270.1| hypothetical protein VIBHAR_02308 [Vibrio harveyi ATCC BAA-1116]
          Length = 217

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 59/189 (31%), Gaps = 21/189 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M + +    I+ D ETTGL S    IIE  A+               + P       EA 
Sbjct: 11  MKKLSTENAIIIDTETTGLGSDT-EIIEFTAICADSGKVIVNE---LVKPTC-SIPAEAT 65

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI----------------AHNAKFDVG 104
            +HGITDE +KD P F  +FS ++          I                  NA +   
Sbjct: 66  AIHGITDEDVKDAPDFHLVFSNYFLPLLNGRPIIIYNSDFDTRLIIQSLDKHCNAAYVQS 125

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
             +   +                 +           L + C +  + +S  + H AL D 
Sbjct: 126 VHDLFFKFCVPQCAMLWYAEFFGVLNEHHEDYKWQSLTNACAQQQVDVSDLTAHRALADC 185

Query: 165 HLLSDVYIK 173
            +   +   
Sbjct: 186 EMTRRLIHA 194


>gi|314934059|ref|ZP_07841422.1| exonuclease [Staphylococcus caprae C87]
 gi|313653170|gb|EFS16929.1| exonuclease [Staphylococcus caprae C87]
          Length = 184

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 66/173 (38%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V++++   T  +F   + P     +   + +HGI  E
Sbjct: 6   FVALDFET--ANGKRTSICSVGMVKVINNQIT-ESFYTLVNPFD-YFTETNINVHGIRPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D PSF  ++     F NE     +AHNA FD+  ++  L+ +N +    +       
Sbjct: 62  DVEDAPSFEYVYPYMLQFINE--LPVVAHNAAFDMNVLHQSLKSLNIETPSMTYFCSYQL 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
             R                    +     H AL D+   + +  +++     +
Sbjct: 120 AKRTIDAYRYGL---KHLMNHYQLDFHGHHDALNDAKACAMITFRLLKHYDDL 169


>gi|222149472|ref|YP_002550429.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4]
 gi|221736455|gb|ACM37418.1| polymerase epsilon subunit [Agrobacterium vitis S4]
          Length = 326

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF 47
           I+ D ETTGL+ + D IIEIG +              +V+
Sbjct: 74  IILDTETTGLNWRKDEIIEIGLIAFTFDSNGNIGDVTEVY 113


>gi|153938164|ref|YP_001389626.1| DNA polymerase III subunit epsilon [Clostridium botulinum F str.
           Langeland]
 gi|152934060|gb|ABS39558.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum F str. Langeland]
 gi|295317718|gb|ADF98095.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum F str. 230613]
          Length = 309

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 65/212 (30%), Gaps = 11/212 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +F   N   IAHNA FD+  + + L+  N        I   
Sbjct: 58  PHMVQDELEFDKIWGKIKGYF--NNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTM 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG------SQ 180
                         LN++    G    H       +    +     K +           
Sbjct: 116 KLSKNFYSNIDNARLNTVNNFLGYKFKHHDALADAMACSNILINISKELNSKDINEISKL 175

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
           I        +  +K        +    R  P 
Sbjct: 176 IGVTLGYVNENGYKPSSTKGRILKRSNRQAPK 207


>gi|89094681|ref|ZP_01167617.1| ribonuclease T [Oceanospirillum sp. MED92]
 gi|89081027|gb|EAR60263.1| ribonuclease T [Oceanospirillum sp. MED92]
          Length = 209

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 71/199 (35%), Gaps = 13/199 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S+ D ++EI AV L    +     +++F+  + P  G      AL   G
Sbjct: 11  VVVDVETAGFNSRTDALLEIAAVTLTMDENGFLMIDQSFEAQVEPFEGANLEQSALDFTG 70

Query: 65  ITDEFLKD--------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                        +       + A  + HNA FD GF+NA   R +  
Sbjct: 71  IDPYDPDREAVPERDAMEEIFKPVRKAIKAHGCKRAVLVGHNASFDQGFVNAAANRADIK 130

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    +  H AL D+   ++++  ++ 
Sbjct: 131 RNPFHPFSTFDTATLGGLAFGQTVLARACQVAGIEFDGKQAHSALYDTMKTAELFCLIVN 190

Query: 177 GGSQINFGFKTNEDRFFKE 195
              ++         +  +E
Sbjct: 191 RWKELGGWEMAESFQDDEE 209


>gi|86144205|ref|ZP_01062541.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Leeuwenhoekiella blandensis MED217]
 gi|85829335|gb|EAQ47801.1| probable DNA-directed DNA polymerase III  (epsilon subunit)
           [Leeuwenhoekiella blandensis MED217]
          Length = 458

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 7/195 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + D+ETTG     + + E+   +   +   ++ F   + P  R      + L GI + 
Sbjct: 2   YAILDLETTGGKYNEEGVTEVAIYKFDGHKVVDQ-FISLVNPE-RPIQAFVVGLTGINNA 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P F  +     +    Q+   +AHNA+FD   +  E  R+  D    S     L+
Sbjct: 60  MLRNAPKFYEVAKRIIE--ITQDCIIVAHNAQFDYRILQLEFDRLGYDYQRKSLCTVELA 117

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   S +          + I    +H A  D+     ++  ++   S+     +  
Sbjct: 118 QELLPGQESYSL---GKLVRNLGIPITDRHRANGDALATVKLFKLLLAKDSKKTIIQEAV 174

Query: 189 EDRFFKEEKKTVPNI 203
           +    K+    + +I
Sbjct: 175 KLNPRKQIDTKLRDI 189


>gi|330799210|ref|XP_003287640.1| hypothetical protein DICPUDRAFT_151766 [Dictyostelium purpureum]
 gi|325082367|gb|EGC35851.1| hypothetical protein DICPUDRAFT_151766 [Dictyostelium purpureum]
          Length = 557

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 7/198 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D ETTGL    D I EI  ++L D       F   + P    +S  A            +
Sbjct: 286 DTETTGLSVATDEITEISIIDLYD----GSHFYKLINPTTTVSSASASIHGHTNKSLAGN 341

Query: 73  KPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +          E+   + +  A  IAHN KFD G + +++ +           I  +   
Sbjct: 342 EYWCDIEPSLIEYLSKYQKSGAYIIAHNEKFDRGILASQIGKNAASVPSMFPSIVFVDSI 401

Query: 131 RRKHPSSRNDL-NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
                  +                      +      + D+ + +    ++     + + 
Sbjct: 402 PIFKRFVKKLEGGYSMSSLIDHYQIPKSDKSHSSCQDVLDLVLLLKEHKNKEGKNIEADL 461

Query: 190 DRFFKEEKKTVPNISLLK 207
            +F  +  K + N   LK
Sbjct: 462 AKFLNDTIKEIKNKHNLK 479


>gi|120608729|ref|YP_968407.1| DNA-directed DNA polymerase [Acidovorax citrulli AAC00-1]
 gi|120587193|gb|ABM30633.1| DNA-directed DNA polymerase [Acidovorax citrulli AAC00-1]
          Length = 221

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  E+  V + +    +R FQ  +   G    P  ++L GIT
Sbjct: 4   RIAVIDFETTGMTPSQGARATEVAIVLMEEGRPVDR-FQSLMR-TGAWLPPFIIQLTGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
              L   P   S+  E   F  +      AHNA FD  F 
Sbjct: 62  PAMLDTAPPAESVMREAARFVGDAPMV--AHNASFDSRFW 99


>gi|255745686|ref|ZP_05419634.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|255736761|gb|EET92158.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
          Length = 233

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 53/176 (30%), Gaps = 16/176 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57
           +  D ETTGL+++ D I+ IG V         ++     + P           +G  +S 
Sbjct: 45  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEDESIVFHGITHSE 104

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                          +     I    +          I+ N   +            +  
Sbjct: 105 LQHAQAPEQVLKELLEALHGKIVVVHFRHIERDFLRQISLNIWGEAIEFPVLDTLEIERQ 164

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L   +      IARR  PS R        R    +   S H AL D+   ++++  
Sbjct: 165 LLDKQRSLWQRIARRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQA 216


>gi|56460528|ref|YP_155809.1| DNA polymerase III subunit epsilon [Idiomarina loihiensis L2TR]
 gi|56179538|gb|AAV82260.1| 3'-5' exonuclease/DnaQ family enzyme [Idiomarina loihiensis L2TR]
          Length = 248

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
           I K  M  +  D ETTGLD +   I+ I A+ +  +    +      + P  R  + E++
Sbjct: 53  INKTPM--VAVDFETTGLDPEQHGIVSIAAIPMTTERILFSEAKSWVVKP-RRSLTDESV 109

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW 94
            +HGIT   ++  P   SI  E  +    +    
Sbjct: 110 VIHGITHSEIEHAPDLESIIDELLELVAGKVWVV 143


>gi|77361037|ref|YP_340612.1| ribonuclease T [Pseudoalteromonas haloplanktis TAC125]
 gi|76875948|emb|CAI87170.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 232

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 72/213 (33%), Gaps = 17/213 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIG--AVELLDYSK--TNRTFQVFLCP-----------NGRK 54
           +V D+ET G +   D ++EI    +++ D      + T    + P               
Sbjct: 19  VVIDVETGGFNKDTDALLEIAVSVLKMDDEGLLSIDHTVHFHVEPFADANIEQAAIEFNG 78

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P +     +             +  +       Q +  +AHNA FD GF+NA ++R N
Sbjct: 79  IDPFSALRGAV--PEEHAIKEICKVVRKAQKAAGCQRSVVVAHNAAFDHGFLNAAIERNN 136

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                    +   + +       +  L   C+  GI   +   H AL D+   +++Y  +
Sbjct: 137 IKRTPFHPFVSFDTTSLAGLALGQTVLAKACRAAGIEFDNSQAHSALYDTERTAELYCLI 196

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207
           +    Q+        +    E +    +    K
Sbjct: 197 VNRWQQLGGWPLAPLENTDTELQVDDIDSDDAK 229


>gi|209695329|ref|YP_002263258.1| ribonuclease T [Aliivibrio salmonicida LFI1238]
 gi|208009281|emb|CAQ79547.1| ribonuclease T [Aliivibrio salmonicida LFI1238]
          Length = 221

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 72/202 (35%), Gaps = 14/202 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +SK D ++EI AV L      Y K   T    + P  G     EAL   G
Sbjct: 20  VVIDVETAGFNSKTDALLEICAVTLAMDDEGYLKPATTIHFHVTPFEGANLEQEALDFIG 79

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F   +              +  +     + + A  +AHNA FD  F+    +R   
Sbjct: 80  IRDPFSPLRGAVTEDVALKEIFKLIRKEQKQHDCRRAIMVAHNANFDHSFVMEAAERTKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         + A       +  L   CK  G+    +  H AL D+   ++++  ++
Sbjct: 140 KRIPFHPFCTFDTAAISGLALGQTVLAKACKTAGMDFDGKEAHSALYDTEKTAELFCHIV 199

Query: 176 VGGSQINFGFKTNEDRFFKEEK 197
                +       E       K
Sbjct: 200 NKWKDLGGWPLAPEPENDTNNK 221


>gi|294795062|ref|ZP_06760197.1| exonuclease [Veillonella sp. 3_1_44]
 gi|294454424|gb|EFG22798.1| exonuclease [Veillonella sp. 3_1_44]
          Length = 209

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 63/165 (38%), Gaps = 7/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +   +    +  + + D   T + +   + P       E +++HGI  +
Sbjct: 4   FVALDFET--ANKFKNSACSLAVITVKDGQITKKAY-SLIKPPFMSFDDECIEIHGIQPK 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  + +F  +++  ++  + +    +AHNAKFD+  + A L        +         
Sbjct: 61  DVLHEKTFDELWNAIYEN-HLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKL 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                     + LN++    G+       H AL D+   + V ++
Sbjct: 120 SRAVWPDLVNHKLNTMAAYIGVEF---KHHYALDDAETCAKVVLE 161


>gi|223044042|ref|ZP_03614082.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus capitis
           SK14]
 gi|222442585|gb|EEE48690.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus capitis
           SK14]
          Length = 184

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 66/173 (38%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V++++   T  +F   + P     +   + +HGI  E
Sbjct: 6   FVALDFET--ANGKRTSICSVGMVKVINNQIT-ESFYTLVNPFD-YFTETNINVHGIRPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D PSF  ++     F NE     +AHNA FD+  ++  L+ +N +    +       
Sbjct: 62  NVEDAPSFEYVYPYMLKFINE--LPVVAHNAAFDMNVLHQSLKSLNIETPSMTYFCSYQL 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
             R                    +     H AL D+   + +  +++     +
Sbjct: 120 AKRTIDAYRYGL---KHLMNHYQLDFHGHHDALNDAKACAMITFRLLKHYDDL 169


>gi|28199095|ref|NP_779409.1| ribonuclease T [Xylella fastidiosa Temecula1]
 gi|32129969|sp|Q87C86|RNT_XYLFT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|28057193|gb|AAO29058.1| ribonuclease T [Xylella fastidiosa Temecula1]
          Length = 211

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 62/183 (33%), Gaps = 13/183 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +  +  ++EI  + +                 + P  G    P++L++ G
Sbjct: 24  VVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTDIDPKSLEVTG 83

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 +        +  Q A  + HNA FD+ F+NA + R    
Sbjct: 84  IILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTAYK 143

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                +     ++        +  L    +  G+  +    H A+ D+   + ++  +  
Sbjct: 144 RNPFHQFSVFDTVTLAGMAYGQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFCTITN 203

Query: 177 GGS 179
              
Sbjct: 204 IWP 206


>gi|283833269|ref|ZP_06353010.1| ribonuclease T [Citrobacter youngae ATCC 29220]
 gi|291070906|gb|EFE09015.1| ribonuclease T [Citrobacter youngae ATCC 29220]
          Length = 215

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +   +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPNNPLRGAVSEYDALHAIFKMVRKGIKESGCNRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLSLGQTVLSKACLAAGMEFDGNQAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|305667231|ref|YP_003863518.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170]
 gi|88708165|gb|EAR00403.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170]
          Length = 454

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 4/114 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG     + I EI   +   +   ++ F   + P  +   P  + L GI ++ L
Sbjct: 4   ILDIETTGGKYNEEGITEIAIHKFDGHQVVDK-FISLVNPE-KDIQPFVVNLTGINNKML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +  P F  +     +    +++  +AHNA+FD   +  E +R+  +    +   
Sbjct: 62  RTAPKFHEVAKRIVE--ITEDSVLVAHNAQFDYRILRTEFRRLGYNFERKTLCT 113


>gi|309807670|ref|ZP_07701611.1| putative CRISPR-associated endoribonuclease Cas2 [Lactobacillus
           iners LactinV 01V1-a]
 gi|308169103|gb|EFO71180.1| putative CRISPR-associated endoribonuclease Cas2 [Lactobacillus
           iners LactinV 01V1-a]
          Length = 275

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           I  N    ++ D+ETTGLD  N+ IIEIGA+++         +   + 
Sbjct: 102 IDTNTKPYVIIDLETTGLDYINNNIIEIGAIKIAKNI---EEYSCIVK 146


>gi|304383875|ref|ZP_07366332.1| exonuclease [Prevotella marshii DSM 16973]
 gi|304334953|gb|EFM01226.1| exonuclease [Prevotella marshii DSM 16973]
          Length = 163

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 67/170 (39%), Gaps = 8/170 (4%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+     D ET   +++   +  +G V + +      TF   + P     S   +++HG+
Sbjct: 1   MKDFAAIDFET--ANNERSSVCSVGLVIVRNG-AVADTFYSLIQPEPNYYSYWCVRVHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T       P FS ++ +            +AHN++FD   + A  +    D  D S    
Sbjct: 58  THADTDAAPVFSEVWKQIEPLIEG--LPLVAHNSRFDESCLRAVFRVYQMDYPDYSFFDT 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +  R     S + L+++    G     ++ H AL D+   + +  K++
Sbjct: 116 LTAARRTFPHLSNHQLHTVATECG--YDLKNHHHALADAEACAWIARKIL 163


>gi|290962326|ref|YP_003493508.1| DNA polymerase III subunit epsilon [Streptomyces scabiei 87.22]
 gi|260651852|emb|CBG74981.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
           [Streptomyces scabiei 87.22]
          Length = 613

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 74/202 (36%), Gaps = 9/202 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+ET+GL    DR++ +  + L    ++T   F   L P      P  + +HG+T + L
Sbjct: 22  VDVETSGLRPGRDRVLSLSILTLDAQGNQTGE-FSTLLNP---DCDPGPVHVHGLTADRL 77

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P+F  I  +     +      +AHNA+FD  F+  E  ++        R+       
Sbjct: 78  AGAPAFEEIAPQVGALLSS--RVLVAHNAQFDYDFLAHEFAQVRSWAPVSRRLCTLALNR 135

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
                +    L +L   YG+       H A  D  +LS +    +    Q+         
Sbjct: 136 LVGPATPDLKLGTLAAHYGVRQEKA--HDAQDDVRVLSGILRGSLSAAEQLGLALPVLGC 193

Query: 191 RFFKEEKKTVPNISLLKRDKPL 212
              ++ +  VP      R+   
Sbjct: 194 PPRQDYRPYVPKTPCAYRNPGR 215


>gi|254233206|ref|ZP_04926532.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis C]
 gi|124602999|gb|EAY61274.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis C]
          Length = 329

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 7/201 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +P F+ I  E  D         +AHN  FD  F+ AE +    +      +       
Sbjct: 75  DGQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R +       L +L   +G+       H A  D  +L+ +    +    +++     +  
Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDVRVLTGILAAALESARELDVWLPVHPV 190

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
              +     V +  L      
Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211


>gi|15843331|ref|NP_338368.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           CDC1551]
 gi|148824916|ref|YP_001289670.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis F11]
 gi|218755494|ref|ZP_03534290.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis GM
           1503]
 gi|254366256|ref|ZP_04982300.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254552821|ref|ZP_05143268.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289763891|ref|ZP_06523269.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis GM 1503]
 gi|306778600|ref|ZP_07416937.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu002]
 gi|306786623|ref|ZP_07424945.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu003]
 gi|306790989|ref|ZP_07429311.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu004]
 gi|306791307|ref|ZP_07429609.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu005]
 gi|306795373|ref|ZP_07433675.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu006]
 gi|306801344|ref|ZP_07438012.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu008]
 gi|306805555|ref|ZP_07442223.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu007]
 gi|306969951|ref|ZP_07482612.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu009]
 gi|13883693|gb|AAK48182.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|134151768|gb|EBA43813.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148723443|gb|ABR08068.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           F11]
 gi|289711397|gb|EFD75413.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis GM 1503]
 gi|308328330|gb|EFP17181.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu002]
 gi|308328734|gb|EFP17585.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu003]
 gi|308332576|gb|EFP21427.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu004]
 gi|308340068|gb|EFP28919.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu005]
 gi|308344057|gb|EFP32908.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu006]
 gi|308347855|gb|EFP36706.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu007]
 gi|308351843|gb|EFP40694.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu008]
 gi|308352508|gb|EFP41359.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu009]
 gi|323717575|gb|EGB26777.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           CDC1551A]
          Length = 329

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 7/201 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +P F+ I  E  D         +AHN  FD  F+ AE +    +      +       
Sbjct: 75  DGQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R +       L +L   +G+       H A  D  +L+ +    +    +++     +  
Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDVRVLTGILAAALESARELDVWLPVHPV 190

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
              +     V +  L      
Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211


>gi|322691183|ref|YP_004220753.1| hypothetical protein BLLJ_0994 [Bifidobacterium longum subsp.
          longum JCM 1217]
 gi|320456039|dbj|BAJ66661.1| hypothetical protein BLLJ_0994 [Bifidobacterium longum subsp.
          longum JCM 1217]
          Length = 185

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           D ETTGLD + D I+EIG +    D    +  F   +   G+ +               
Sbjct: 16 VDTETTGLDPRKDPILEIGMIATGPDLKPVDDGFHTTVHWEGKPSEFIQGMHGPNGLLAE 75

Query: 71 KDKPSFSSIF 80
             PS   +F
Sbjct: 76 CAHPSAPHMF 85


>gi|226949657|ref|YP_002804748.1| exonuclease family protein [Clostridium botulinum A2 str. Kyoto]
 gi|226843422|gb|ACO86088.1| exonuclease family protein [Clostridium botulinum A2 str. Kyoto]
          Length = 253

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 70/207 (33%), Gaps = 15/207 (7%)

Query: 7   MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-S 56
           M  I+FD+E    +   +          II+IGA++L +   T  TF   + P    N +
Sbjct: 1   MNYIIFDLE---FNQGYNNKIEIKCPFEIIQIGAIKLNENFTTIDTFNALIKPEIYSNLN 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAELQRIN 114
           P    L  +T + L     F  ++ +F +F N+    +         ++       +   
Sbjct: 58  PFVKNLTNLTMDSLNKANPFREVYKDFLEFLNKNRNIFCIWGMTDMKELFRNIVYYELDT 117

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +        +   +     +P S N   S          +   H A  D+   ++V+ K+
Sbjct: 118 ESMPKEYINVQAYTGKYLNYPKSINVGLSNAVELFHITKNNDFHNAFNDAFYTAEVFKKI 177

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP 201
                +      TN    ++ +     
Sbjct: 178 YSEKIKTKIYKPTNNSTTYRNKNTKTR 204


>gi|149190247|ref|ZP_01868521.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
 gi|148835854|gb|EDL52817.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
          Length = 144

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 145 CKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204
            K Y I  S R  HGALLD+ +L+DVY+ M     Q +  F   +    +   +T+  ++
Sbjct: 51  AKHYTIDTSARVLHGALLDAEILADVYLAMTG--GQTSMQFNAGQSDGDESGGETIKRLT 108

Query: 205 LLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWD 238
              R        + +E++ H+  +  + K  + +W 
Sbjct: 109 -TGRKSLKILHASADEIEAHNSRLDIVEKGGSCLWR 143


>gi|78485464|ref|YP_391389.1| DNA polymerase III subunit epsilon [Thiomicrospira crunogena XCL-2]
 gi|78363750|gb|ABB41715.1| Exonuclease [Thiomicrospira crunogena XCL-2]
          Length = 207

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 5/177 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQ-VFLCPNGRKNSPEALKLHGITD 67
           + FD ETTGL+ + DRI+ + A+++  +   T+      F+       S E++K+H I +
Sbjct: 32  VCFDCETTGLNPRKDRIVSLSAIKIRGNEVLTSEALNLTFV--QEAAISEESIKIHWIRN 89

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRIIDT 126
           E  K   S       F  F   +            +   I      I             
Sbjct: 90  EDTKAGLSEQEGIEAFLHFIGSRPLVGYYLEFDVAMVNQIIKPWLGITLPNAQIEVSSRY 149

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                   P    DL        + + +  +H A  D+ + S +YIK+    +    
Sbjct: 150 YDYKEEIIPKKIIDLTFDAILKDLELPNLGQHDAFSDAFMTSLIYIKLKSLENYQGL 206


>gi|229826629|ref|ZP_04452698.1| hypothetical protein GCWU000182_02005 [Abiotrophia defectiva ATCC
           49176]
 gi|229789499|gb|EEP25613.1| hypothetical protein GCWU000182_02005 [Abiotrophia defectiva ATCC
           49176]
          Length = 313

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 71/220 (32%), Gaps = 10/220 (4%)

Query: 7   MRKIVFDIE-TTGLDSKND-------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           MR IVFD+E   G  SK +        IIEIGAV+L ++ K   +F   + P       +
Sbjct: 1   MRYIVFDLEWNQGYPSKEESEKSLPFEIIEIGAVKLDEHFKIIDSFHRIIKPVVYPELFK 60

Query: 59  ALKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             K    +T++ L     F +   EF  +  + +  +                    +  
Sbjct: 61  YTKELIPLTEKDLSKGTDFVTACKEFLKWCRKGDRNYSFATWGTLDLLELQRNMAFFEVY 120

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKMMV 176
              SR +   ++    +        ++             +  A   +   ++   +++ 
Sbjct: 121 NCFSRPLYYYNVQYLFNIFMEKYDETVFSLENAIKYLELDEDKAFHSAISDAEYTAEILR 180

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             S IN     + D +     K      +    K   TR 
Sbjct: 181 HISDINIRLYPSVDTYKFPLNKNQEVSIIYPDHKLSITRA 220


>gi|332307350|ref|YP_004435201.1| ribonuclease T [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174679|gb|AEE23933.1| ribonuclease T [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 211

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 74/184 (40%), Gaps = 13/184 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELL-DYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G +++ D ++E+ A+  ++  D   T ++TF   + P  G      AL+ +G
Sbjct: 18  VIVDVETAGFNAQTDALLEVAAITTKMDADGYLTPDKTFHYHVVPFEGANLEKAALEFNG 77

Query: 65  ITDE--------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +     + Q +  +AHNA FD+GFINA ++R    
Sbjct: 78  IDPWCALRGALDETEVMKDLCKQIRKEQKDADCQRSVMVAHNAAFDLGFINAAIERSKIK 137

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   +         +  L   C+   I+      H AL D+   +++Y  ++ 
Sbjct: 138 RTPFHPFVSFDTTTLAGLALGQTVLVKACQAANISFDQSEAHSALYDTQKTAELYCYIVN 197

Query: 177 GGSQ 180
               
Sbjct: 198 KWHS 201


>gi|148549845|ref|YP_001269947.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1]
 gi|148513903|gb|ABQ80763.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1]
          Length = 211

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 7/174 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  E+  V L       R +Q  +   G         L GIT
Sbjct: 3   RIAVIDFETTGISPGTGCRATEVAVVMLEGGRIVER-YQSLMN-AGVPVPAFVAGLTGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+  P    + +E  +F        +AHNA FD  F + EL RI +          +
Sbjct: 61  TAMLRSAPPVDKVMNEVAEFVGG--TPLLAHNAAFDQKFWDYELSRIGRS--RSQPFACS 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           L ++RR  P++ N       R+       + H A+ D+ + +++   +     Q
Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMADAEMAANLLQHLAGVLRQ 170


>gi|74316107|ref|YP_313847.1| exonuclease [Thiobacillus denitrificans ATCC 25259]
 gi|74055602|gb|AAZ96042.1| Exonuclease [Thiobacillus denitrificans ATCC 25259]
          Length = 233

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39
          R +V D+ET+GLD + DR+I IGAV +     
Sbjct: 41 RCVVVDVETSGLDPRRDRLIAIGAVAVSRGKV 72


>gi|332523978|ref|ZP_08400230.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332315242|gb|EGJ28227.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 820

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + +   +  V D+E T  ++ +D RII+IG V + D      +FQ  + P+ +  S    
Sbjct: 1   MTEKLTKYAVIDLEAT--NAGSDARIIQIGIVIVEDKKII-NSFQTDINPHSK-LSEHIK 56

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
            L GITD+ L   P FS +  E ++   +    ++AHN KFD  
Sbjct: 57  SLTGITDQQLATAPEFSQVAGEIFELIKD--CVFVAHNVKFDAN 98


>gi|210622633|ref|ZP_03293293.1| hypothetical protein CLOHIR_01241 [Clostridium hiranonis DSM 13275]
 gi|210154134|gb|EEA85140.1| hypothetical protein CLOHIR_01241 [Clostridium hiranonis DSM 13275]
          Length = 273

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 76/235 (32%), Gaps = 18/235 (7%)

Query: 6   KMRKIVFDIE-TTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPN-GR 53
            M  IVFD+E   G + K +           II++GAV+L         F  F+ P    
Sbjct: 4   MMEYIVFDLEFNQGFNKKTNKTFSDNACPFEIIQLGAVKLDSNFNIIAAFDTFIKPCLYT 63

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQ 111
              P   K+ GI  E L++ P+F   F +F +F    +  +         ++        
Sbjct: 64  SMHPYVAKITGICMEDLENAPTFKEAFKKFTEFVASDDPIFCVWGKSDLRELYRNIKYHN 123

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +         +   +     H ++++                + H AL D++  + V+
Sbjct: 124 LPDLSLPKSYIDVQYYASDFINHTTAQSIGLENAVIALNLEDTVAYHNALNDAYYTAKVF 183

Query: 172 IKMMVGGSQINF----GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
             +     + N         +         + V         K L   ++K+E  
Sbjct: 184 ASINPKAIKPNIYIYTNLSDSSSFGLDPLDEDVFLKECDDFSKVLNRNLSKDEKK 238


>gi|313500723|gb|ADR62089.1| DNA polymerase III, epsilon subunit [Pseudomonas putida BIRD-1]
          Length = 203

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 7/174 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  E+  V L       R +Q  +   G         L GIT
Sbjct: 3   RIAVIDFETTGISPGTGCRATEVAVVMLEGGRIVER-YQSLMN-AGVPVPAFVAGLTGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+  P    + +E  +F        +AHNA FD  F + EL RI +          +
Sbjct: 61  TAMLRSAPPVEKVMNEVAEFVGG--TPLLAHNAAFDQKFWDYELSRIGRS--RSQPFACS 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           L ++RR  P++ N       R+       + H A+ D+ + +++   +     Q
Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMADAEMAANLLQHLAGVLRQ 170


>gi|325678237|ref|ZP_08157866.1| exonuclease [Ruminococcus albus 8]
 gi|324110129|gb|EGC04316.1| exonuclease [Ruminococcus albus 8]
          Length = 651

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 56/179 (31%), Gaps = 15/179 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDE 68
           I+ D ETTGL    D +++   V +++        F  +  PN           H   + 
Sbjct: 206 IILDTETTGLSPSYDELLQ---VSIINGK--GEVLFDSYFKPNAASWDEAQAVNHISPEM 260

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                    +  +       ++  + + +N  FD+ F+       + D      ++   +
Sbjct: 261 VKNSPR--LNEKAYEISQILDKAHKIVGYNVDFDLDFLWLNGAGGSNDNFKKVDVMQMFA 318

Query: 129 IAR-----RKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYIKMMVGGSQ 180
                   +        L      YG      ++  H +L D +    VY  ++    +
Sbjct: 319 PIYGEINEKYGGYKWQKLTKAADYYGYDWDSHAESAHNSLGDCYATLHVYKSVLSDLKK 377


>gi|83591972|ref|YP_425724.1| DNA polymerase III subunit epsilon [Rhodospirillum rubrum ATCC
          11170]
 gi|83574886|gb|ABC21437.1| Exonuclease [Rhodospirillum rubrum ATCC 11170]
          Length = 209

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 9  KIV-FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50
          ++V  D ETTGLD  ND II + AV +  +   T++   + + P
Sbjct: 30 EVVSVDCETTGLDRHNDDIITLAAVRVRGNRVLTSQKLDLVVKP 73


>gi|325271798|ref|ZP_08138267.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
 gi|324103069|gb|EGC00447.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
          Length = 201

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 7/174 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  E+  V L       R +Q  +   G         L GIT
Sbjct: 3   RIAVIDFETTGISPGAGCRATEVAVVMLEGGRIVER-YQSLMN-AGVPVPAFVAGLTGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+  P    + +E  +F  E     +AHNA FD  F + EL RI +          +
Sbjct: 61  TAMLRSAPPVDKVMNEVAEFVGE--TPLLAHNAAFDQKFWDYELARIGRS--RSQSFACS 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           L ++RR  P++ N       R+       + H A+ D+ + +++   +     +
Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLPDTGNAHRAMADAEMAANLMQHLAGVLRE 170


>gi|120437353|ref|YP_863039.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803]
 gi|117579503|emb|CAL67972.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803]
          Length = 1461

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 72/230 (31%), Gaps = 19/230 (8%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL    +          R I+I      +           + P+G     +
Sbjct: 2   YLIFDTETTGLPKNWNAPLTDSDNWPRCIQIAWQVHDEMGNLIENQDYLVQPDGFDIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           + ++HGI+ +  K++        E ++   +++   +  N  FD+  + AE  R + +  
Sbjct: 62  SERIHGISTDLAKEQGVPLDEVLEKFNIALQKSKFVVGQNVGFDLNIMGAEFIRRDFENS 121

Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                +         +                 +    +    +    H A  D    + 
Sbjct: 122 LQEMPVLDTCTEVTANLCKIPGGRGGKFKLPTLTELHEFLFEEAFGEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +++++              D F    +     I L+        + +++
Sbjct: 182 CFLELIRQRIYTIEELDVPVDYFENFSEANPKRIQLIGLKHINLKKASEK 231


>gi|329964271|ref|ZP_08301372.1| exonuclease [Bacteroides fluxus YIT 12057]
 gi|328525576|gb|EGF52619.1| exonuclease [Bacteroides fluxus YIT 12057]
          Length = 168

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 8/168 (4%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR     D ET   + +   +  +G V + +   T  ++   + P     +    ++HG+
Sbjct: 1   MRNFAAIDFET--ANEQRCSVCSVGVVIVKEGEIT-DSYYSLIRPEPEYYTYWTTRVHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII- 124
           T       P F  ++ E            +AHN  FD   + A  +  + D  D      
Sbjct: 58  TLADTAGAPVFPDVWREIAPRIEG--LPLVAHNKAFDESCLKAVFRTYSMDYPDYDFYCT 115

Query: 125 -DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                   +  P  +    + C  Y +   H +   A   + +   V+
Sbjct: 116 LQASRRVIKGLPDYQLHTVAACCGYKLERHHNALADAEACAWIAKAVF 163


>gi|254226650|ref|ZP_04920229.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V51]
 gi|125620819|gb|EAZ49174.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V51]
          Length = 236

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 52/184 (28%), Gaps = 16/184 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57
           +  D ETTGL+++ D I+ IG V         ++     + P           +G  +S 
Sbjct: 48  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEEESIVFHGITHSE 107

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                          +     I    +          I+ N   +            +  
Sbjct: 108 LQHAQAPEQVLKELLEALHGKIVVVHFRHIERDFLRQISLNIWGEAIEFPVLDTLEIERQ 167

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   +      I R+  PS R        R    +   S H AL D+   ++++      
Sbjct: 168 LLDKQRSLWQRITRQPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 223

Query: 178 GSQI 181
               
Sbjct: 224 HLPP 227


>gi|261253571|ref|ZP_05946144.1| ribonuclease T [Vibrio orientalis CIP 102891]
 gi|260936962|gb|EEX92951.1| ribonuclease T [Vibrio orientalis CIP 102891]
          Length = 218

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 72/199 (36%), Gaps = 14/199 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L            T    + P  G     EAL+ +G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLKMDENGDLAPASTIHFHVEPFEGANLEKEALEFNG 79

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F   +              +  +     +   A  +AHNA FD  F+    +R   
Sbjct: 80  IRDPFSPLRGAVTEAEALKEIYKLVRKEQKAADCSRAIMVAHNATFDHSFVMEASERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         + A       +  L   CK  G+   ++  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTAALSGLAYGQTVLAKACKTAGMDFDNKEAHSALYDTQKTAELFCGIV 199

Query: 176 VGGSQINFGFKTNEDRFFK 194
                +        D   K
Sbjct: 200 NKWKALGGWPVVEPDTDKK 218


>gi|192289550|ref|YP_001990155.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
           TIE-1]
 gi|192283299|gb|ACE99679.1| Exonuclease RNase T and DNA polymerase III [Rhodopseudomonas
           palustris TIE-1]
          Length = 276

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 54/187 (28%), Gaps = 17/187 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNR-TFQVFLCPNGRKNSPEALKLHG 64
           I+ DIETTGLD   D IIE+G V+            R TF  F          E   + G
Sbjct: 23  IMLDIETTGLDHSTDEIIELGMVKFDYSAEGRILGVRGTFSAF-NEPSVPIPREITAITG 81

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD  +                F +     IAHN+ FD  F                   
Sbjct: 82  ITDGMVAG----HGFDVHAVAAFVDDAVIVIAHNSGFDRKFAERYWPVFEHRAW------ 131

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
              S+      +       L             H A+ D H L ++    +         
Sbjct: 132 -ACSVTEVDWGAHGFADAQLGYLLNGAGFFHQAHRAVDDCHALLEILDFTLPTTGAPALA 190

Query: 185 FKTNEDR 191
              +  R
Sbjct: 191 LLLDNAR 197


>gi|262159037|ref|ZP_06030149.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262169396|ref|ZP_06037088.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262022209|gb|EEY40918.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262029222|gb|EEY47874.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
          Length = 233

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 53/184 (28%), Gaps = 16/184 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57
           +  D ETTGL+++ D I+ IG V         ++     + P           +G  +S 
Sbjct: 45  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEDESIVFHGITHSE 104

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                          +     I    +          I+ N   +            +  
Sbjct: 105 LQHAQAPEQVLKELLEALHGKIVVVHFRHIERDFLRQISLNIWGEAIEFPVLDTLEIERQ 164

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   +      IARR  PS R        R    +   S H AL D+   ++++      
Sbjct: 165 LLDKQRSLWQRIARRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 220

Query: 178 GSQI 181
               
Sbjct: 221 HLPP 224


>gi|227892520|ref|ZP_04010325.1| possible DNA-directed DNA polymerase III epsilon subunit
           [Lactobacillus ultunensis DSM 16047]
 gi|227865641|gb|EEJ73062.1| possible DNA-directed DNA polymerase III epsilon subunit
           [Lactobacillus ultunensis DSM 16047]
          Length = 370

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 8/213 (3%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   +    II+ G   + +     +T+   + P+ R+     + L GI +
Sbjct: 10  FAVVDLETTGTQRENGHHIIQFGCAIIKNLKVV-KTYSFMINPH-REIPQSVVNLTGIHN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIID 125
           E +  +  F     +       QNA ++AHN  FD+ F+N EL +   D L       ++
Sbjct: 68  EDVAKEKDFKFYAPKIVKIL--QNAVFVAHNVDFDLPFLNYELTQHGYDALTNKAIDTVE 125

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
              IA    PS +    +          H++   A   + LL  + IK +    Q     
Sbjct: 126 LAKIAFPTLPSYKLSDLTSQLEIKHLNPHKADSDAYGTAILLIKI-IKQLEKLPQATLNT 184

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
            ++       +   V         K      ++
Sbjct: 185 LSSLSHGLIRDTSWVITTIADNLRKEKRPLGSE 217


>gi|238020074|ref|ZP_04600500.1| hypothetical protein VEIDISOL_01954 [Veillonella dispar ATCC 17748]
 gi|237863598|gb|EEP64888.1| hypothetical protein VEIDISOL_01954 [Veillonella dispar ATCC 17748]
          Length = 209

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 62/165 (37%), Gaps = 7/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +   +    +  + + D     + +   + P       E +++HGI  +
Sbjct: 4   FVALDFET--ANKFKNSACSLAVITVKDGQIIKKAY-SLIKPPFMSFDDECIEIHGIQPK 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  + +F  +++  ++  + +    +AHNAKFD+  + A L        D         
Sbjct: 61  DVIHEKTFDQLWNAIYEN-HLKGNIMVAHNAKFDMNVLRATLDYYKIPWPDLDYACTVKL 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                     + LN++    G+       H AL D+   + V ++
Sbjct: 120 SRAVWPDLVNHKLNTMAAYIGVEF---KHHYALDDAETCAKVVLE 161


>gi|212639167|ref|YP_002315687.1| hypothetical protein Aflv_1334 [Anoxybacillus flavithermus WK1]
 gi|212560647|gb|ACJ33702.1| 3'-5' exonuclease related protein [Anoxybacillus flavithermus WK1]
          Length = 240

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 67/177 (37%), Gaps = 8/177 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            I+ D ETTG    + D I  + A++  +       +     P  R+     + L GIT+
Sbjct: 58  FILLDTETTGFSPQRGDEIFSLAALKTKNGEPL-DLYCSNFRPK-RRIPEHVVTLTGITN 115

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +   P           F    ++  + ++ + DV F+N  L R  +  L  + I    
Sbjct: 116 DDVAYAPLLEEEIHHILSFL--NHSILLGYHIQHDVAFLNEFLSRNYRTVLQQTTIEMRK 173

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            +    H S     ++L       ++   +H A  D   L +++ ++ +   Q+   
Sbjct: 174 IMECIYHESFPTLDDAL---SFYHLTPIDRHTAKGDVMSLFEMWKRVFIELQQLQID 227


>gi|109897723|ref|YP_660978.1| ribonuclease T [Pseudoalteromonas atlantica T6c]
 gi|109700004|gb|ABG39924.1| RNAse T [Pseudoalteromonas atlantica T6c]
          Length = 211

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 13/184 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL---DYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G +++ D ++E+ A+      D   T ++TF   + P  G      AL+ +G
Sbjct: 18  VIVDVETAGFNAQTDALLEVAAITTQMDADGFLTPDKTFHYHVVPFEGANLEKAALEFNG 77

Query: 65  ITDE--------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +     + Q +  +AHNA FD+GFINA ++R    
Sbjct: 78  IDPWCALRGALDETEVMKDLCKQIRKEQKDADCQRSVMVAHNAAFDLGFINAAIERSKIK 137

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   +         +  L   C+   I+      H AL D+   +++Y  ++ 
Sbjct: 138 RTPFHPFVSFDTTTLSGLALGQTVLVKACQAANISFDQSEAHSALYDTQKTAELYCYIVN 197

Query: 177 GGSQ 180
               
Sbjct: 198 KWQS 201


>gi|325970703|ref|YP_004246894.1| exonuclease RNase T and DNA polymerase III [Spirochaeta sp. Buddy]
 gi|324025941|gb|ADY12700.1| Exonuclease RNase T and DNA polymerase III [Spirochaeta sp. Buddy]
          Length = 197

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 56/179 (31%), Gaps = 7/179 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET            +      +      T+   + P      P    +H + 
Sbjct: 1   MNYVAIDFETANGYPGGA--CSVALARFDEEGMLLDTYYSLIHPKHPYFDPSMTAVHQLK 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE     P F  I+ +  DF  +     +AHNA FD+G +    +  + +    + +   
Sbjct: 59  DEECLAAPEFDVIWPQMRDFIGK--DLLVAHNAVFDMGVLKGCFEVYDLEARQMTYLCTL 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
               +         L+ L   YG        H AL D+ +   +  K+  G        
Sbjct: 117 TIARKVWPKMLSYKLSYLVDYYG---MEYQAHYALDDAIMCGKMMHKLCYGHLYEMLDL 172


>gi|269214643|ref|ZP_05986966.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           lactamica ATCC 23970]
 gi|269209302|gb|EEZ75757.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           lactamica ATCC 23970]
          Length = 470

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +       +L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAELTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          IAHN++FD  F+    +         S  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVLKG--CVLIAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192


>gi|114319997|ref|YP_741680.1| DNA polymerase III subunit epsilon [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226391|gb|ABI56190.1| Exonuclease, RNase T and DNA polymerase III [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 240

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +  D+ETTGLD     I+ IG V       +        L P     S       
Sbjct: 51  VALDMETTGLDPDRHAIVSIGLVPFDLQRIRLPDRRHWLLQPPRPLLSESITLHG 105


>gi|15641303|ref|NP_230935.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586529|ref|ZP_01676315.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           2740-80]
 gi|121728837|ref|ZP_01681848.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
 gi|147673833|ref|YP_001216855.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395]
 gi|153801317|ref|ZP_01955903.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-3]
 gi|153819755|ref|ZP_01972422.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
           8457]
 gi|153823215|ref|ZP_01975882.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
 gi|227081461|ref|YP_002810012.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           M66-2]
 gi|229505123|ref|ZP_04394633.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229511206|ref|ZP_04400685.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229518325|ref|ZP_04407769.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229608142|ref|YP_002878790.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236]
 gi|254848414|ref|ZP_05237764.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
 gi|298498618|ref|ZP_07008425.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
 gi|9655777|gb|AAF94449.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121549208|gb|EAX59240.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           2740-80]
 gi|121628884|gb|EAX61341.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
 gi|124123142|gb|EAY41885.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-3]
 gi|126509702|gb|EAZ72296.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
           8457]
 gi|126519275|gb|EAZ76498.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
 gi|146315716|gb|ABQ20255.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|227009349|gb|ACP05561.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           M66-2]
 gi|227013207|gb|ACP09417.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229345040|gb|EEO10014.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229351171|gb|EEO16112.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229357346|gb|EEO22263.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229370797|gb|ACQ61220.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236]
 gi|254844119|gb|EET22533.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
 gi|297542951|gb|EFH79001.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
          Length = 236

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 53/184 (28%), Gaps = 16/184 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57
           +  D ETTGL+++ D I+ IG V         ++     + P           +G  +S 
Sbjct: 48  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEDESIVFHGITHSE 107

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                          +     I    +          I+ N   +            +  
Sbjct: 108 LQHAQAPEQVLKELLEALHGKIVVVHFRHIERDFLRQISLNIWGEAIEFPVLDTLEIERQ 167

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   +      IARR  PS R        R    +   S H AL D+   ++++      
Sbjct: 168 LLDKQRSLWQRIARRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 223

Query: 178 GSQI 181
               
Sbjct: 224 HLPP 227


>gi|302541826|ref|ZP_07294168.1| putative DNA polymerase III epsilon subunit [Streptomyces
          hygroscopicus ATCC 53653]
 gi|302459444|gb|EFL22537.1| putative DNA polymerase III epsilon subunit [Streptomyces
          himastatinicus ATCC 53653]
          Length = 239

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
          FD+ETTG D +  RI+    VE+       R  +    P       +A+ +HGIT+E   
Sbjct: 11 FDLETTGTDPRTARIVTAAVVEVRGGEPIGRH-EWLAAPE-VPIPDDAVAVHGITNERAA 68

Query: 72 DKPSFSSIFSEFWDFFNEQNAEWI 95
                 +  E  D          
Sbjct: 69 AGRPIREVADEIADVLVAHWRAGA 92


>gi|209696236|ref|YP_002264166.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238]
 gi|208010189|emb|CAQ80516.1| putative exonuclease [Aliivibrio salmonicida LFI1238]
          Length = 210

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 1/166 (0%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETT LD  +  ++ I A+++  +   T++T  + L P     S           +
Sbjct: 31  VSIDCETTSLDPNHAELVSIAAIKIKQNRVLTSQTIHLKLRPPHNLTSESVKIHQLRHHD 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                    +I        N     +  H  K  +                         
Sbjct: 91  LSHGLSEKDAIIQLLQFIGNRPIVGYHIHYDKKILDRSCLRHCGHPFPNRLIEVCHIYHH 150

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                 P++  DL+       + +    +H AL D+   + +Y+++
Sbjct: 151 KLECLLPNAYYDLSIEAISTHLDLPQAERHDALQDAIAAALIYVRL 196


>gi|88859048|ref|ZP_01133689.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas
           tunicata D2]
 gi|88819274|gb|EAR29088.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas
           tunicata D2]
          Length = 210

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 9/175 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + +V D+E TGLD K D I+ +  + +        R+   F+     +     +      
Sbjct: 27  KYLVIDLELTGLDPKVDEIVSLAWLPIEEQRIIVGRSEH-FINCEVNELKQSPIFHGIDR 85

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSR 122
                  P   ++           +   + HNA+ D  F+ A  Q  N       +  + 
Sbjct: 86  FAVKGGVPLRQALLELQP---LLDDHVLVFHNAELDWAFLKAAFQNANLLLSSSVMLDTM 142

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            I+   +  + H  + +DLN    R    +     H AL D+   +++++  +  
Sbjct: 143 KIEYKRLMNQGHEIASDDLNLARCRSRYQLPEYLTHNALTDALATAELFLAQLNQ 197


>gi|327483977|gb|AEA78384.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4]
          Length = 233

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 53/184 (28%), Gaps = 16/184 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57
           +  D ETTGL+++ D I+ IG V         ++     + P           +G  +S 
Sbjct: 45  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEDESIVFHGITHSE 104

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                          +     I    +          I+ N   +V           +  
Sbjct: 105 LQHAQAPEQVLKELLEALHGKIVVVHFRHIERDFLRQISLNIWGEVIEFPVLDTLEIERQ 164

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   +      I RR  PS R        R    +   S H AL D+   ++++      
Sbjct: 165 LLDKQRSLWQRITRRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 220

Query: 178 GSQI 181
               
Sbjct: 221 HLPP 224


>gi|242077240|ref|XP_002448556.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor]
 gi|241939739|gb|EES12884.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor]
          Length = 283

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
            +VFD+ETTG    ++RI+E    +L      + TFQ  + P  
Sbjct: 85  FLVFDLETTGFFHVDNRIVEFALRDLSGGK--DCTFQTLINPER 126


>gi|168177595|ref|ZP_02612259.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum NCTC 2916]
 gi|182670548|gb|EDT82522.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum NCTC 2916]
          Length = 309

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 68/219 (31%), Gaps = 11/219 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +F   N   IAHNA FD+  + + L+  N        I   
Sbjct: 58  PHMVQDELEFDKIWGKIKGYF--NNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTM 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG------SQ 180
                         LN++    G    H       +    +     K +           
Sbjct: 116 KLSKNFYSNIDNARLNTVNNFLGYKFKHHDALADAMACSNILINISKELNSKDINEISKL 175

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           I        +  +K        +    R  P   + T E
Sbjct: 176 IGVTLGYVNEDGYKPSSTKGRILKRSNRQAPRENKKTIE 214


>gi|149910647|ref|ZP_01899284.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
 gi|149806274|gb|EDM66250.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
          Length = 239

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR 53
           +  D ETTGLDS+ + II IG V          +    ++ P  +
Sbjct: 48 FVALDFETTGLDSEQNSIISIGLVPFNLQRIFCRQAQHWYIEPEDK 93


>gi|325858421|ref|ZP_08172583.1| exonuclease [Prevotella denticola CRIS 18C-A]
 gi|325483059|gb|EGC86047.1| exonuclease [Prevotella denticola CRIS 18C-A]
          Length = 178

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 7/174 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +++        D ET   + +   +  +G V +    +   TF   + P          +
Sbjct: 12  LQEIMQNFAAIDFET--ANFERSSVCSVGVVIVRGG-EVADTFYSLVHPEPNYYQWRCTQ 68

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG+T E     P FS +++             +AHNA FD G + A  Q    D  D  
Sbjct: 69  VHGLTREDTDGAPVFSKVWARIEPLIEG--LPLVAHNAPFDKGCLRACFQTYRMDYPDYE 126

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +    +  R     S + L+++    G        H AL D+   + +  +++
Sbjct: 127 FLDTLRAARRVFPHLSNHQLHTVSAACG--YDLSRHHHALADAEACAWIAREIL 178


>gi|317128841|ref|YP_004095123.1| exonuclease RNase T and DNA polymerase III [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473789|gb|ADU30392.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           cellulosilyticus DSM 2522]
          Length = 256

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 14/196 (7%)

Query: 7   MRKIVFDIETTGLDSKNDR-----IIEIGAVELLDYS---KTNRTFQVFLCPNGRKNSPE 58
           M  IVFD+ETT      +R     IIEIGAV+L++       +  FQ ++ P  +  S  
Sbjct: 1   MDVIVFDLETT---RNMNRSSMQYIIEIGAVKLVNRGGKLSYHSRFQAYVLPPNKYVSKA 57

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             +    +    K          +F  +   +     A +       +   +     +  
Sbjct: 58  DREFIHASKMDFKHAKKLRDTMRQFIHWIGNKPYYLCAWSTSDLHILVRNYVYGQKYNLS 117

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 D           +R    +   +        ++H A+ D+   + +   ++   
Sbjct: 118 WIENYNDLQQKFGEMININRQISLTDSLKMSGIKLEGNQHSAIDDAMNTAKI---LLTYQ 174

Query: 179 SQINFGFKTNEDRFFK 194
           S I     +    F +
Sbjct: 175 SHIPLDMNSQSSLFSQ 190


>gi|332969609|gb|EGK08627.1| DNA polymerase III, epsilon subunit [Kingella kingae ATCC 23330]
          Length = 463

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  ++ D+ETTG     DRI E+  +          ++   + P  ++ SP   KL GI 
Sbjct: 26  MPVVILDLETTGGHFVQDRITEVAFLRFWQGDVQRVSY--LVNPQ-KEISPFVQKLTGID 82

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++  P+ + I  +         A +IAHN++FD  +     +         +  + +
Sbjct: 83  NQMVRRAPALAKILPDLLPLLRG--ALFIAHNSRFD--YTFWRNECQRAGVAFAALTLCS 138

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R+ +P                    S+H A+ D   L+    + +    
Sbjct: 139 VQLSRKLYPQYHKHSLDSIIERNGL-IVPSRHRAMADVDALAQFLQQALQEHG 190


>gi|297578613|ref|ZP_06940541.1| ribonuclease T [Vibrio cholerae RC385]
 gi|297536207|gb|EFH75040.1| ribonuclease T [Vibrio cholerae RC385]
          Length = 249

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L            T    + P  G      AL+  G
Sbjct: 39  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                  +  +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 99  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 159 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 218

Query: 176 VGGSQIN 182
                + 
Sbjct: 219 NQWKALG 225


>gi|258622020|ref|ZP_05717049.1| ribonuclease T [Vibrio mimicus VM573]
 gi|258627109|ref|ZP_05721905.1| ribonuclease T [Vibrio mimicus VM603]
 gi|262171988|ref|ZP_06039666.1| ribonuclease T [Vibrio mimicus MB-451]
 gi|258580627|gb|EEW05580.1| ribonuclease T [Vibrio mimicus VM603]
 gi|258585773|gb|EEW10493.1| ribonuclease T [Vibrio mimicus VM573]
 gi|261893064|gb|EEY39050.1| ribonuclease T [Vibrio mimicus MB-451]
          Length = 224

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L            T    + P  G      AL+  G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                  +  +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 80  IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 199

Query: 176 VGGSQIN 182
                + 
Sbjct: 200 NQWKALG 206


>gi|242309952|ref|ZP_04809107.1| DNA polymerase III subunit epsilon [Helicobacter pullorum MIT
           98-5489]
 gi|239523249|gb|EEQ63115.1| DNA polymerase III subunit epsilon [Helicobacter pullorum MIT
           98-5489]
          Length = 247

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 7/123 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I++ K    + DIET G +    + IEIGA+   +     + FQ F+     +      K
Sbjct: 66  IKEQK--FCIVDIETNGHNPFLHQPIEIGAILYQNGM-VQKEFQSFV--FCEEIPEYITK 120

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +  IT E L++ P    +   F       +  ++AHN  FD GF++  L       L   
Sbjct: 121 ITNITTEMLRNAPPIHQVLESF--RIFLGDCVFVAHNVGFDYGFLSNSLHHYGFGYLYNP 178

Query: 122 RII 124
            + 
Sbjct: 179 SLC 181


>gi|254291880|ref|ZP_04962663.1| ribonuclease T [Vibrio cholerae AM-19226]
 gi|150422240|gb|EDN14204.1| ribonuclease T [Vibrio cholerae AM-19226]
          Length = 224

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L            T    + P  G      AL+  G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                  +  +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 80  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 199

Query: 176 VGGSQIN 182
                + 
Sbjct: 200 NQWKALG 206


>gi|153823922|ref|ZP_01976589.1| ribonuclease T [Vibrio cholerae B33]
 gi|126518562|gb|EAZ75785.1| ribonuclease T [Vibrio cholerae B33]
          Length = 227

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L            T    + P  G      AL+  G
Sbjct: 23  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 82

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                  +  +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 83  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 142

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 143 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 202

Query: 176 VGGSQIN 182
                + 
Sbjct: 203 NQWKALG 209


>gi|121728127|ref|ZP_01681163.1| ribonuclease T [Vibrio cholerae V52]
 gi|121629595|gb|EAX62017.1| ribonuclease T [Vibrio cholerae V52]
          Length = 212

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L            T    + P  G      AL+  G
Sbjct: 8   VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 67

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                  +  +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 68  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 127

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 128 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 187

Query: 176 VGGSQIN 182
                + 
Sbjct: 188 NQWKALG 194


>gi|229505395|ref|ZP_04394905.1| ribonuclease T [Vibrio cholerae BX 330286]
 gi|229510935|ref|ZP_04400414.1| ribonuclease T [Vibrio cholerae B33]
 gi|229512432|ref|ZP_04401905.1| ribonuclease T [Vibrio cholerae TMA 21]
 gi|229518056|ref|ZP_04407500.1| ribonuclease T [Vibrio cholerae RC9]
 gi|229529900|ref|ZP_04419290.1| ribonuclease T [Vibrio cholerae 12129(1)]
 gi|229608414|ref|YP_002879062.1| ribonuclease T [Vibrio cholerae MJ-1236]
 gi|255744788|ref|ZP_05418739.1| ribonuclease T [Vibrio cholera CIRS 101]
 gi|262151277|ref|ZP_06028413.1| ribonuclease T [Vibrio cholerae INDRE 91/1]
 gi|262167159|ref|ZP_06034872.1| ribonuclease T [Vibrio cholerae RC27]
 gi|14548237|sp|Q9KT97|RNT_VIBCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|229333674|gb|EEN99160.1| ribonuclease T [Vibrio cholerae 12129(1)]
 gi|229344771|gb|EEO09745.1| ribonuclease T [Vibrio cholerae RC9]
 gi|229350513|gb|EEO15460.1| ribonuclease T [Vibrio cholerae TMA 21]
 gi|229350900|gb|EEO15841.1| ribonuclease T [Vibrio cholerae B33]
 gi|229357618|gb|EEO22535.1| ribonuclease T [Vibrio cholerae BX 330286]
 gi|229371069|gb|ACQ61492.1| ribonuclease T [Vibrio cholerae MJ-1236]
 gi|255737819|gb|EET93213.1| ribonuclease T [Vibrio cholera CIRS 101]
 gi|262024380|gb|EEY43068.1| ribonuclease T [Vibrio cholerae RC27]
 gi|262030968|gb|EEY49596.1| ribonuclease T [Vibrio cholerae INDRE 91/1]
          Length = 224

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L            T    + P  G      AL+  G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                  +  +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 80  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 199

Query: 176 VGGSQIN 182
                + 
Sbjct: 200 NQWKALG 206


>gi|291067016|gb|ADD74132.1| DNA polymerase III epsilon subunit-like protein [Rickettsia felis]
          Length = 377

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 71/231 (30%), Gaps = 11/231 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK--TNRTFQVFLCPNGRKNSPEALKLHG 64
           I  D ETTGL  + D+I+E+G V+     D            +  P  +       +L G
Sbjct: 126 IFLDTETTGLSHEKDKILELGMVKFEYTEDGRIYQIVDELNQYQDPQ-QPIPLRITELTG 184

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITDE ++ K       ++F +  +   A   A +  F        + ++           
Sbjct: 185 ITDEMVQGKAIDQEAVTQFLEEVDIIIAHNAAFDRPFFDRMFPEVITKVWGCSRVDIDWK 244

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK-MMVGGSQINF 183
                + +    +            +       H       +   + +K ++    +  F
Sbjct: 245 AEKIESHKLEYLTYKYNFFYEGHRAVIDCRAGLHLLAQTLPITKTLVLKQLLNNCHKTRF 304

Query: 184 GFKTNEDRFFKEEKKTVP----NISLLKRDKPLFTRITKEELDEHDKTIQT 230
               +   +  ++         +I+     K     + ++ L+     + +
Sbjct: 305 NVWVHNAPYDSKDLLKSRGYRWSINPQANYKAWMIEVFEDTLETELTFLNS 355


>gi|240136987|ref|YP_002961456.1| hypothetical protein MexAM1_META1p0217 [Methylobacterium extorquens
           AM1]
 gi|240006953|gb|ACS38179.1| hypothetical protein, putative exonuclease domain [Methylobacterium
           extorquens AM1]
          Length = 297

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 8/211 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ET   + + D    +G   +       R     + P   + SP  +++HGI 
Sbjct: 1   MKVVAIDFET--ANERRDSACAVGLAWIEGGRVVRRE-SRLIRPPQLRFSPGNIRVHGIL 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P+F  + +EF    +      +AHNA FD+G + A L    +   D +     
Sbjct: 58  PADVRDAPTFPEVIAEFLPDLSG--GLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
               R     + + L  +  R GI       H A  D+   +++ +  +      +    
Sbjct: 116 QIARRVFPDPAGHGLAKVASRLGIRF---EHHDAGEDAFACAEIALAALRETGAADIADL 172

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
                       T P   + +       R +
Sbjct: 173 ARGLGLTPIRALTTPRRDMTRSTSAKALRAS 203


>gi|89890222|ref|ZP_01201732.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7]
 gi|89517137|gb|EAS19794.1| DNA  polymerase III, epsilon subunit [Flavobacteria bacterium
           BBFL7]
          Length = 466

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 7/172 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG     +R+ EI  V +   +  ++ +   + P           L GI + 
Sbjct: 8   YCVVDIETTGNRMTGNRMTEICIVRMRGDTILDK-YSSLIDPE-VLIPDYITTLTGIDNA 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F+ +  E  +    ++  ++AHN  FD   +  E +R++ D          LS
Sbjct: 66  MVASAPVFADVAEEILN--FTKDYIFVAHNVNFDYNVLRNEFKRLHHDFKRKKLCTVRLS 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                       L  LC   GI     ++H A  D+     ++ K++    +
Sbjct: 124 RELIPG-MRSYSLGKLCDDIGIP--LINRHRAEGDTDATVILFQKLITIDQE 172


>gi|319956599|ref|YP_004167862.1| exonuclease rnase t and DNA polymerase iii [Nitratifractor
           salsuginis DSM 16511]
 gi|319419003|gb|ADV46113.1| Exonuclease RNase T and DNA polymerase III [Nitratifractor
           salsuginis DSM 16511]
          Length = 294

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 1/128 (0%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I+ D ETTG D++ DRI ++  + L +  +    +     P            H   
Sbjct: 1   MKTIILDTETTGTDAE-DRICQLAYLVLDESGEVVEHYNELCTPPLEIKYDAMAIHHITP 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +          +         N      +  NA FD+  +  E        +D  R++  
Sbjct: 60  EMLEGKPACTETEGFRRLRELNSPENLLVIQNAPFDLAMLEKEGFENRMRLIDTFRLVRK 119

Query: 127 LSIARRKH 134
                 +H
Sbjct: 120 FMPDSPQH 127


>gi|226947476|ref|YP_002802567.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A2 str. Kyoto]
 gi|226841365|gb|ACO84031.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A2 str. Kyoto]
          Length = 309

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 65/212 (30%), Gaps = 11/212 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +F   N   IAHNA FD+  + + L+  N        I   
Sbjct: 58  PHMVQDELEFDKIWGKIKGYF--NNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTM 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG------SQ 180
                         LN++    G    H       +    +     K +           
Sbjct: 116 KLSKNFYSNIDNARLNTVNNFLGYKFKHHDALADAMACSNILINISKELNSKDINEISKL 175

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
           I        +  +K        +    R  P 
Sbjct: 176 IGVTLGYINENGYKPSSTKGRILKRSNRQSPR 207


>gi|59711532|ref|YP_204308.1| ribonuclease T [Vibrio fischeri ES114]
 gi|197335112|ref|YP_002155688.1| ribonuclease T [Vibrio fischeri MJ11]
 gi|59479633|gb|AAW85420.1| ribonuclease T (RNase T) [Vibrio fischeri ES114]
 gi|197316602|gb|ACH66049.1| ribonuclease T [Vibrio fischeri MJ11]
          Length = 222

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 72/202 (35%), Gaps = 14/202 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L        K   T    + P  G     EAL+ +G
Sbjct: 21  VVIDVETAGFNAKTDALLEICAVTLAMDEQGNLKPATTIHFHVTPFEGANIEKEALEFNG 80

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F   +              +  +     + Q A  +AHNA FD  F+     R   
Sbjct: 81  IRDPFSPLRGAVTEDVALKEIFKLVRKEQKQHDCQRAIMVAHNAHFDHSFVMEAAARTKL 140

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         + A       +  L   CK  G+    +  H AL D+   ++++ +++
Sbjct: 141 KRIPFHPFCTFDTAAISGLALGQTVLAKACKTAGMDFDGKEAHSALYDTEKTAELFCRIV 200

Query: 176 VGGSQINFGFKTNEDRFFKEEK 197
                +       E        
Sbjct: 201 NKWKDLGGWPVMPEPENDTNNN 222


>gi|170758900|ref|YP_001785582.1| DNA polymerase III subunit epsilon [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405889|gb|ACA54300.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 309

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 69/221 (31%), Gaps = 5/221 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +F   N    AHNA FD+  +   L+  N        I   
Sbjct: 58  PRMVQDELEFDKIWGKIKHYF--NNNLVTAHNASFDISVLRNTLKLYNIKMPSFDYICTM 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                         LN++    G    H       +    +     K +   +       
Sbjct: 116 KLSKNFYSNIDNVRLNTVNNFLGYKFKHHDALADAMACSNILLNISKELNSKNINEISKL 175

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
                 +  E    P+ +  +  K    + +KE     +  
Sbjct: 176 VGVTLGYVNENGYKPSSTKGRILKRSNRQASKENKKIIENF 216


>gi|229525881|ref|ZP_04415286.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|229339462|gb|EEO04479.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
          Length = 236

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 52/184 (28%), Gaps = 16/184 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+++ D I+ IG V         ++     + P+        +       +
Sbjct: 48  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEDESIVFHGITHSD 107

Query: 69  FLKDKPS-----------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
               +                I    +          I+ N   +            +  
Sbjct: 108 LQHAQAPEQVLKELLEALHGKIVVVHFRHIERDFLRQISLNIWGEAIEFPVLDTLEIERQ 167

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   +      IARR  PS R        R    +   S H AL D+   ++++      
Sbjct: 168 LLDKQRSLWQRIARRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 223

Query: 178 GSQI 181
               
Sbjct: 224 HLPP 227


>gi|88802793|ref|ZP_01118320.1| DNA polymerase III subunit [Polaribacter irgensii 23-P]
 gi|88781651|gb|EAR12829.1| DNA polymerase III subunit [Polaribacter irgensii 23-P]
          Length = 361

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 9/196 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +   +S  ++ F   + P  ++     ++L GI ++
Sbjct: 2   YAILDIETTGGKFNEEGITEIAIYKFDGHSVVDQ-FISLVNPE-KEIQQFVVRLTGINNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-INAELQRINKDPLDPSRIIDTL 127
            L+  P F  I     +    ++   +AHN  FD         +       +    ++  
Sbjct: 60  MLRSAPKFYEIAKRIIE--ITKDCTLVAHNTTFDYRILSTEFDRLGYDFNRNTLCTVELS 117

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                  PS      +      + I    +H A  D+     ++  ++   S        
Sbjct: 118 KQLILDQPSYSLGKLTKA----LGIPMTDRHRASGDALATVQLFKLLLEKDSTKTIIQNF 173

Query: 188 NEDRFFKEEKKTVPNI 203
            +    + EK+ +  +
Sbjct: 174 VKHHDQRFEKERLQKL 189


>gi|319952129|ref|YP_004163396.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM
           14237]
 gi|319420789|gb|ADV47898.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM
           14237]
          Length = 457

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 68/166 (40%), Gaps = 7/166 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG   + ++I EI   +   Y      F   + P   +       L GI +  +
Sbjct: 4   IIDIETTGNGIQGNKITEISIFKYDGYDVI-EEFTTLINPE-AEIPYFITGLTGIDNTMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ P FS +  +       +   ++AHN  FD   I  E + I  D +   + + T+ ++
Sbjct: 62  RNAPKFSEVADQILK--ITEETIFVAHNVSFDYNIIKHEFKAIGVDFI--RQKLCTVRLS 117

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           R+  P   +          + I    +H A  D+   + ++ K++ 
Sbjct: 118 RKLFPGYNSYSL-GKLCTALKIPLTDRHRARGDAEATTILFEKLLR 162


>gi|297578875|ref|ZP_06940803.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297536469|gb|EFH75302.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 236

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 55/184 (29%), Gaps = 16/184 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57
           +  D ETTGL+++ D I+ IG V         N+     + P           +G  +S 
Sbjct: 48  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQARYWLVKPSQPLEEESIVFHGITHSE 107

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                          +     I    + +   +    I+ N   +            +  
Sbjct: 108 LQHAQAPEQVLKELLEALHGKIVVVHFRYIEREFLRQISLNIWGEAIEFPVLDTLEIERQ 167

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   +      IARR  PS R        R    +   S H AL D+   ++++      
Sbjct: 168 LLDKQRSLWQRIARRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 223

Query: 178 GSQI 181
               
Sbjct: 224 HLPP 227


>gi|283785135|ref|YP_003365000.1| ribonuclease T [Citrobacter rodentium ICC168]
 gi|282948589|emb|CBG88180.1| ribonuclease T [Citrobacter rodentium ICC168]
          Length = 214

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNARTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +   +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPNNPLRGAVSEYDALHAIFKMVRKGIKDNGCNRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGTQAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|237738098|ref|ZP_04568579.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419978|gb|EEO35025.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
          Length = 474

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 81/212 (38%), Gaps = 11/212 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             I+  +ETTGL+   D I++I A+ + + +    TF+ F+ P   +   EA +++GIT 
Sbjct: 6   NYIIVSLETTGLNHLVDEILKIEAIRIENGNIV-DTFKEFIKPK-FEIPKEASRINGITF 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +K+ PS   +  + +  F ++    +A+NA+F   FI    +R          I    
Sbjct: 64  EDVKNSPSIEDVL-DKFKNFRKKGDILVAYNAEFVSKFIGFNFKRYKNSIFSHEFIDLLS 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            +          +L  +     I  +++ K     +           +    +  F    
Sbjct: 123 LVRYIYKNIPSYNLKYVATYLKIDSTNKDKTIICYEI---LKNLKNKIGDNQEKIFNGSE 179

Query: 188 -----NEDRFFKEEKKTVPNISLLKRDKPLFT 214
                 +++  K+  K       +K+   L  
Sbjct: 180 CIIKYLDEKKLKKLNKDSGYKKEVKKKWLLII 211


>gi|54309733|ref|YP_130753.1| ribonuclease T [Photobacterium profundum SS9]
 gi|54036326|sp|Q6LP25|RNT_PHOPR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|46914171|emb|CAG20951.1| putative ribonuclease T [Photobacterium profundum SS9]
          Length = 223

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 16/204 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L      + K   T    + P  G     EAL+ +G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPASTIHFHVAPFEGAVLHKEALEFNG 79

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F   +                 +     +   A  +AHNA FD  F+    +R   
Sbjct: 80  IRDPFSPLRGAVSEETALKEIYKQIRKEQKTADCSRAIMVAHNANFDHSFVMEASERARL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                       + A       +  L   CK  GI   ++  H AL D+   ++++ +++
Sbjct: 140 KRNPFHPFATFDTAALSGLAFGQTVLAKACKTAGIAFDNKEAHSALYDTERTAELFCEIV 199

Query: 176 VGGSQINFG--FKTNEDRFFKEEK 197
               ++     F++  +   K + 
Sbjct: 200 NKWKKLGGWPLFESQTEEIDKSQN 223


>gi|42523607|ref|NP_968987.1| DNA polymerase III subunit epsilon [Bdellovibrio bacteriovorus
           HD100]
 gi|39575813|emb|CAE79980.1| DNA polymerase III polC-type [Bdellovibrio bacteriovorus HD100]
          Length = 295

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 78/231 (33%), Gaps = 16/231 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNR------TFQVFLCPNGRKNSPEALKLHG 64
           + D+ETTGL+   D IIEIG  + L    +        ++  F  P G+  SPE   L G
Sbjct: 48  ILDVETTGLNQTEDTIIEIGIRQFLFNKNSGEVLAVTKSYSSFQDP-GKPISPEIQALTG 106

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITDE +  K     I     D    +    IAHNAKFD  FI+   +   +     S   
Sbjct: 107 ITDEMVAGK----QIDWTAVDALLNECQLIIAHNAKFDRPFIDRRSKTSPERVWACSFKQ 162

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL----LSDVYI-KMMVGGS 179
              S      P                 +       L    L        Y+ +++    
Sbjct: 163 VEWSDKGFTSPKLELLNIYHGFFTDSHRAINDVDALLYLLSLPDAETQKPYLFELISNAR 222

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           +           F  ++       +    ++     I K+E+ +  K ++ 
Sbjct: 223 RPMTHVIATSAPFESKDHLKGRGYNWDSINRFWSKIIFKDEVADETKWLEE 273


>gi|291276271|ref|YP_003516043.1| DNA polymerase III subunit epsilon [Helicobacter mustelae 12198]
 gi|290963465|emb|CBG39295.1| Putative dna polymerase III epsilon subunit [Helicobacter mustelae
           12198]
          Length = 247

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 51/114 (44%), Gaps = 5/114 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             DIETTG    +  IIEIGA++         TF+  +    +       +L GI    L
Sbjct: 69  FVDIETTGSKPNHSSIIEIGAIKYHGGEII-DTFETLV--FSQSVPENITELTGIDAGML 125

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            D PS   +   F  F    N+ ++AHN  FD GFI+  L R N+  L   R+ 
Sbjct: 126 ADAPSEREVLQRFRKFL--GNSVFVAHNVVFDYGFISDRLLRYNEPYLLNPRLC 177


>gi|156975262|ref|YP_001446170.1| ribonuclease T [Vibrio harveyi ATCC BAA-1116]
 gi|269962098|ref|ZP_06176452.1| ribonuclease T [Vibrio harveyi 1DA3]
 gi|166200023|sp|A7MUL2|RNT_VIBHB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|156526856|gb|ABU71942.1| hypothetical protein VIBHAR_02991 [Vibrio harveyi ATCC BAA-1116]
 gi|269833182|gb|EEZ87287.1| ribonuclease T [Vibrio harveyi 1DA3]
          Length = 214

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 14/195 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L            T    + P  G     EAL+ +G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHIEPFEGANLEKEALEFNG 79

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F   +              +  +     +   A  +AHNA FD+ F+NA  +R   
Sbjct: 80  IRDPFSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKAAGMEFDNREAHSALYDTQQTAELFCGIV 199

Query: 176 VGGSQINFGFKTNED 190
                +      +E+
Sbjct: 200 NKWKALGGWPLVDEE 214


>gi|307720491|ref|YP_003891631.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978584|gb|ADN08619.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
          Length = 269

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 16/212 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIET G   +  +IIE+ AV++ +    +R F+  +  + ++ +P   ++ GI  +  
Sbjct: 71  IVDIETNGSKIEKHQIIELAAVKVKNGQIIDR-FESLV--HTKEINPHITEITGIAADDT 127

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + P    +   F       NA ++AH+ KFD  FI+  LQ+I  +PL            
Sbjct: 128 TNAPQLKDVLIRF--KLFLGNAVFVAHDVKFDYSFISKSLQKIGLEPLLNRS--LCSLAL 183

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
             +   S     S              H A+ D      +++        ++        
Sbjct: 184 AERTVVSYRYALSYLNETLKLNPKARHHRAMSDVITTYGLFL--------LSLDNLDENI 235

Query: 191 RFFKEEKKTVPNISLLKRDKP-LFTRITKEEL 221
           +  ++  K       LKR K      + +EE 
Sbjct: 236 KTVEDLIKFSKEAPRLKRPKFDPLLEVKQEEK 267


>gi|304387160|ref|ZP_07369404.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC
           13091]
 gi|304338764|gb|EFM04874.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC
           13091]
 gi|325201850|gb|ADY97304.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M01-240149]
          Length = 470

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          +AHN++FD  F+    +         S  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRVGIGFSSPALCS 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192


>gi|254805232|ref|YP_003083453.1| putative DNA polymerase III subunit [Neisseria meningitidis
           alpha14]
 gi|254668774|emb|CBA06684.1| putative DNA polymerase III subunit [Neisseria meningitidis
           alpha14]
          Length = 461

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          +AHN++FD  F+    +         S  + +
Sbjct: 76  DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRVGIGFSSPALCS 131

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 132 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 183


>gi|161870321|ref|YP_001599491.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442]
 gi|161595874|gb|ABX73534.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442]
          Length = 461

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          +AHN++FD  F+    +         S  + +
Sbjct: 76  DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRVGIGFSSPALCS 131

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 132 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 183


>gi|15610847|ref|NP_218228.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           H37Rv]
 gi|148663576|ref|YP_001285099.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           H37Ra]
 gi|167970866|ref|ZP_02553143.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           H37Ra]
 gi|306778068|ref|ZP_07416405.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu001]
 gi|306974185|ref|ZP_07486846.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu010]
 gi|307081893|ref|ZP_07491063.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu011]
 gi|307086506|ref|ZP_07495619.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu012]
 gi|2960135|emb|CAA18033.1| PROBABLE DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ [Mycobacterium
           tuberculosis H37Rv]
 gi|148507728|gb|ABQ75537.1| DNA polymerase III subunit epsilon DnaQ [Mycobacterium tuberculosis
           H37Ra]
 gi|308213597|gb|EFO72996.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu001]
 gi|308356458|gb|EFP45309.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu010]
 gi|308360405|gb|EFP49256.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu011]
 gi|308364101|gb|EFP52952.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu012]
          Length = 329

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 7/197 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +P F+ I  E  D         +AHN  FD  F+ AE +    +      +       
Sbjct: 75  DGQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R +       L +L   +G+       H A  D  +L+ +    +    +++     +  
Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDVRVLTGILAAALESARELDVWLPVHPV 190

Query: 191 RFFKEEKKTVPNISLLK 207
              +     V +  L  
Sbjct: 191 TRRRWPNGRVTHDELRP 207


>gi|157165763|ref|YP_001466765.1| DNA polymerase III subunit epsilon [Campylobacter concisus 13826]
 gi|112800127|gb|EAT97471.1| DNA polymerase III subunit epsilon [Campylobacter concisus 13826]
          Length = 267

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 6/98 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG  + N +IIEIGA+++ + ++  R F+ F+            +L GI    L
Sbjct: 78  VVDIETTGG-TTNGQIIEIGAIKMKNGTEIGR-FESFV--AASVVPENITELTGIRASDL 133

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
              P+  ++   F        + +IAHN  FD GFI+ 
Sbjct: 134 VGAPNLLNVLERF--KIFLGTSVFIAHNVNFDYGFISH 169


>gi|229529628|ref|ZP_04419018.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229333402|gb|EEN98888.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
          Length = 236

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 53/184 (28%), Gaps = 16/184 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57
           +  D ETTGL+++ D I+ IG V         ++     + P           +G  +S 
Sbjct: 48  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEEESIVFHGITHSE 107

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                          +     I    +     +    I+ N   +            +  
Sbjct: 108 LQHAQAPEQVLKELLEALHGKIVVVHFRHIEREFLRQISLNIWGEAIEFPVLDTLEIERQ 167

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   +      I R+  PS R        R    +   S H AL D+   ++++      
Sbjct: 168 LLDKQRSLWQRITRQPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 223

Query: 178 GSQI 181
               
Sbjct: 224 HLPP 227


>gi|15616807|ref|NP_240019.1| ribonuclease T [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219681560|ref|YP_002467946.1| ribonuclease T [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|219682118|ref|YP_002468502.1| ribonuclease T [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|257471245|ref|ZP_05635244.1| ribonuclease T [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|11387052|sp|P57285|RNT_BUCAI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|25356015|pir||A84952 ribonuclease T [imported] - Buchnera sp. (strain APS)
 gi|10038870|dbj|BAB12905.1| ribonuclease T [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219621851|gb|ACL30007.1| ribonuclease T [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219624403|gb|ACL30558.1| ribonuclease T [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|311085930|gb|ADP66012.1| ribonuclease T [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086501|gb|ADP66582.1| ribonuclease T [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
 gi|311087083|gb|ADP67163.1| ribonuclease T [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
 gi|311087635|gb|ADP67714.1| ribonuclease T [Buchnera aphidicola str. JF98 (Acyrthosiphon
           pisum)]
          Length = 221

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 58/208 (27%), Gaps = 27/208 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCPNGRKNSPEALKLHGI 65
           +V DIET G ++  D ++EI  + L            T    + P           +   
Sbjct: 20  VVIDIETAGFNANTDAVLEIAIITLKMDELGWLHKEDTLHFHIEP-------FKGSIINS 72

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                     F+ +     +    Q+      N     G     +   N +      +  
Sbjct: 73  DAIAFNKIDPFNPLRGAISEKIAIQSILKKVRNGIKIQGCSRGIVVAHNANFDHNFLMAA 132

Query: 126 TLSIARRKHPSSRNDLNSL----------------CKRYGITISHRSKHGALLDSHLLSD 169
              +  + +P                         CK  G++  +   H AL D+   ++
Sbjct: 133 IQRVKIKNNPFHPFATFDTAALSGLVVGQTVLSKACKAIGLSFDNHQAHSALYDTLQTAN 192

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEK 197
           ++ +++    ++       +       K
Sbjct: 193 LFCELVNRWKRLGGWPVDIKKNNSTSNK 220


>gi|88811452|ref|ZP_01126707.1| ribonuclease T [Nitrococcus mobilis Nb-231]
 gi|88791341|gb|EAR22453.1| ribonuclease T [Nitrococcus mobilis Nb-231]
          Length = 222

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIET GL++  D ++++ AV +            T+   + P +G    P++L+ + 
Sbjct: 28  VVVDIETGGLNASTDALLQLAAVIVRMDEDKRVFPAGTYSTHVEPFDGANIDPKSLEFNR 87

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                                  A  + HN+ FD+ F+NA + R    
Sbjct: 88  IDPNHPLRMAKPEEEALRHIFRPIRREIRETGCTRAILVGHNSWFDLCFLNAAVARTGIR 147

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L    K  G +   R  H A+ D+   ++++  ++ 
Sbjct: 148 RNPFHPFTSFDTATLGGLAFGQTVLARAVKASGASWDGREAHSAIYDAEKTAELFCTIVN 207

Query: 177 GGSQIN 182
              ++N
Sbjct: 208 RWDRLN 213


>gi|323496850|ref|ZP_08101887.1| ribonuclease T [Vibrio sinaloensis DSM 21326]
 gi|323318109|gb|EGA71083.1| ribonuclease T [Vibrio sinaloensis DSM 21326]
          Length = 220

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 71/201 (35%), Gaps = 14/201 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L        +   T    + P  G     EAL   G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLKMDENGDLQPASTIHFHVEPFEGANIEKEALDFIG 79

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           + D F   +              +  +     +   A  +AHNA+FD  F+    +R   
Sbjct: 80  LRDPFSPLRGAIPESEALKEIYKLVRKEQKAADCSRAIIVAHNAQFDHSFVMQASERSKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   ++  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKAAGMDFDNKEAHSALYDTQKTAELFCGIV 199

Query: 176 VGGSQINFGFKTNEDRFFKEE 196
                +        D     E
Sbjct: 200 NKWKALGGWPLVEPDANNNNE 220


>gi|222109241|ref|YP_002551505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY]
 gi|221728685|gb|ACM31505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY]
          Length = 218

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 11  VFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG + ++  R  E+  V +      +R +Q  +   G +  P   +L GIT+  
Sbjct: 8   VIDFETTGMMPAQGARATEVAIVLMEGGRVVDR-YQSLMR-TGVRIPPFITQLTGITNAM 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ++  P  +++  E   F  +      AHNA FD  F  AE+Q        P    
Sbjct: 66  VEAAPDAAAVMREAARFVGDAPMV--AHNAAFDRKFWQAEMQHAGLAAPHPFACT 118


>gi|168180760|ref|ZP_02615424.1| exonuclease family protein [Clostridium botulinum NCTC 2916]
 gi|182668520|gb|EDT80499.1| exonuclease family protein [Clostridium botulinum NCTC 2916]
          Length = 253

 Score = 53.0 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 70/207 (33%), Gaps = 15/207 (7%)

Query: 7   MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-S 56
           M  I+FD+E    +   +          II+IGA++L +   T  TF   + P    N +
Sbjct: 1   MNYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSNLN 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAELQRIN 114
           P    L  +T + L     F  ++ +F +F N+    +         ++       +   
Sbjct: 58  PFVKNLTNLTMDSLNKANPFREVYKDFLEFLNKNRNIFCIWGMTDMKELFRNIVYYELDT 117

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +        +   +     +P S N   S          +   H A  D+   ++V+ K+
Sbjct: 118 ESMPKEYINVQAYTGKYLNYPKSINVGLSNAVELFHITKNNDFHNAFNDAFYTAEVFKKI 177

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP 201
                +      TN    ++ +     
Sbjct: 178 YSEKIKTKIYKPTNNSTTYRNKNTKTR 204


>gi|297184143|gb|ADI20262.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 442

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 6/134 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR  V DIE TG    ++RII++    L +    ++     + P  +   P   KL GIT
Sbjct: 1   MRFAVIDIECTGGTFGSERIIDVAIFVLENGEVVDQ-LVSLVNPE-KGIDPYVTKLTGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++  P F  +          ++  ++AHN  FD      E + +  D       +DT
Sbjct: 59  NKMVRTAPKFYELAKRVVK--ITEDCTFVAHNISFDYRVFQQEFESMEFD--YHRATLDT 114

Query: 127 LSIARRKHPSSRND 140
           +    R  P   N 
Sbjct: 115 IPYCERIFPDWENY 128


>gi|257867351|ref|ZP_05647004.1| exonuclease [Enterococcus casseliflavus EC30]
 gi|257873684|ref|ZP_05653337.1| exonuclease [Enterococcus casseliflavus EC10]
 gi|257877427|ref|ZP_05657080.1| exonuclease [Enterococcus casseliflavus EC20]
 gi|257801407|gb|EEV30337.1| exonuclease [Enterococcus casseliflavus EC30]
 gi|257807848|gb|EEV36670.1| exonuclease [Enterococcus casseliflavus EC10]
 gi|257811593|gb|EEV40413.1| exonuclease [Enterococcus casseliflavus EC20]
          Length = 180

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 68/178 (38%), Gaps = 10/178 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + +      +  V + D       +   + P       + +++HGI 
Sbjct: 4   MNFIAMDFET--ANYQKHSACSLALVMVQDSKIVGE-YYTLIQPETEFF-WKNIQIHGIR 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +++ P F  ++ +   ++   +   +AHNA FD G +   L        +   +   
Sbjct: 60  PEDVQEAPKFPDVWKQIQQYYQLNSLI-VAHNAGFDTGVLAGCLDYYGLSQPNYLSLCTV 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            +  +     + + LN++C++  I     + H AL DS   + +   ++    +    
Sbjct: 119 RTSRKLYPEFTNHKLNTVCEQLQIP--LLNHHDALEDSRACAQI---LLRQEEEFGID 171


>gi|219852875|ref|YP_002467307.1| Exonuclease RNase T and DNA polymerase III [Methanosphaerula
          palustris E1-9c]
 gi|219547134|gb|ACL17584.1| Exonuclease RNase T and DNA polymerase III [Methanosphaerula
          palustris E1-9c]
          Length = 193

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 10/67 (14%)

Query: 9  KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           + FD ETTGL  K            RI+E+G V             + + P+G     E
Sbjct: 2  YLFFDTETTGLPKKKHASMHRVANWPRIVELGWVLTDTKGTVIEEAGLLVRPDGFSVPAE 61

Query: 59 ALKLHGI 65
          +  +HGI
Sbjct: 62 STAIHGI 68


>gi|85059419|ref|YP_455121.1| ribonuclease T [Sodalis glossinidius str. 'morsitans']
 gi|84779939|dbj|BAE74716.1| ribonuclease T [Sodalis glossinidius str. 'morsitans']
          Length = 234

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 73/211 (34%), Gaps = 13/211 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++  D ++EI AV  ++ D    + + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAVTDALLEIAAVTLKMDDDGWLQADSTLHFHVDPFPGALLQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +       +  +         A  +AHNA FD GF+ A + R    
Sbjct: 80  IDPHNPLRGAVGEYEALHEIFKMVRKGIKDQGCNRAIIVAHNAAFDHGFLMAAVSRAGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C   GI  +    H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACAAAGIAFNSGEAHSALYDTERTATLFCELVN 199

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207
              ++             EE+          
Sbjct: 200 RWKRLGGWPVAMPAPGDAEEEAVAAQDRANP 230


>gi|325288090|ref|YP_004263880.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489]
 gi|324323544|gb|ADY31009.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489]
          Length = 447

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   + D+ETTG   + ++I EI   +       +  F   + P           L GI 
Sbjct: 1   MMYTIIDVETTG---QTNKITEISIFKFDGDKVVDE-FTSLVNPEDV-IPYYITTLTGID 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           +  + + P+F+ I  +  D    ++  ++AHN  FD   I  E +
Sbjct: 56  NAMVANAPTFAEIAQQVLD--ITEDTIFVAHNVNFDYNVIRNEFK 98


>gi|255530778|ref|YP_003091150.1| DNA polymerase III subunit alpha [Pedobacter heparinus DSM 2366]
 gi|255343762|gb|ACU03088.1| DNA polymerase III, alpha subunit [Pedobacter heparinus DSM 2366]
          Length = 1476

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 73/230 (31%), Gaps = 19/230 (8%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL         D     R I+I      +           + P+G     +
Sbjct: 2   YLIFDTETTGLPRNWNAPITDTDNWPRCIQIAWQLHDELGNMIEHQDYLVKPDGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---------E 109
           A ++HGI+ E   ++    +   E ++    +    +  N  FDV  +            
Sbjct: 62  AERIHGISTELATEQGIELAEVLEKFNIALSKAKFVVGQNIGFDVNIMGCELYRLGVESP 121

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++           + L +   +    +    +   +Y         H A  D    + 
Sbjct: 122 MAQMPVLDTCTEITAELLKLPGGRGGKFKLPNLTELHQYLFGEPFAEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +++++   +      + ++    + ++ T      +  +       + E
Sbjct: 182 CFLQLIKIDAFRPEQLQADQQYITRFKQNTPQVFERVGLNHINLKAASDE 231


>gi|153830906|ref|ZP_01983573.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|229515666|ref|ZP_04405125.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|148873606|gb|EDL71741.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|229347435|gb|EEO12395.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
          Length = 236

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 53/184 (28%), Gaps = 16/184 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57
           +  D ETTGL+++ D I+ IG V         N+     + P           +G  +S 
Sbjct: 48  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQARYWLVKPSQPLEEESIVFHGITHSE 107

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                          +     I    +     +    I+ N   +            +  
Sbjct: 108 LQYAQAPEQVLKELLEALNGKIVVVHFRHIEREFLRQISLNIWGEAIEFPVLDTLEIERQ 167

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   +      I RR  PS R        R    +   S H AL D+   ++++      
Sbjct: 168 LLDKQRSLWQRITRRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 223

Query: 178 GSQI 181
               
Sbjct: 224 HLPP 227


>gi|120435022|ref|YP_860708.1| exonuclease family protein [Gramella forsetii KT0803]
 gi|117577172|emb|CAL65641.1| exonuclease family protein [Gramella forsetii KT0803]
          Length = 457

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 4/116 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +       ++ F   + P  +   P  + L GI ++
Sbjct: 2   YAILDIETTGGKYNEEGITEIAIYKFDGQKVVDQ-FISLVNPE-QPIQPFVVNLTGINND 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            LK+ P F  +     +    ++   +AHNAKFD   +  E +R+  +    S   
Sbjct: 60  MLKNAPKFYEVAKRIVE--ITEDCILVAHNAKFDYRILRTEFRRLGFEYERKSLCT 113


>gi|187777136|ref|ZP_02993609.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC
           15579]
 gi|187774064|gb|EDU37866.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC
           15579]
          Length = 309

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 75/212 (35%), Gaps = 11/212 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIIEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +F   N   IAHNA FD+  + + L+  N        I   
Sbjct: 58  PHMVQDELEFDKIWGKIKGYF--NNNLVIAHNASFDMSVLRSTLELYNIKMPSFEYICTM 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSK-HGALLDSHLLSDVYIKM-MVGGSQIN-- 182
                         LN++    G    H      A+  S++L ++  ++ +   ++I+  
Sbjct: 116 KLSKNFYSNIDNAKLNTVNNFLGYKFQHHDALADAMACSNILLNISKELNLKNINEISKL 175

Query: 183 --FGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
                    +  +K        +    R  P 
Sbjct: 176 VGVTLGYVNENGYKPSSTKGRILKRSNRQAPK 207


>gi|325208398|gb|ADZ03850.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis NZ-05/33]
          Length = 469

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 27  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 83

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          +AHN++FD  F+    +         S  + +
Sbjct: 84  DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 139

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 140 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 191


>gi|325204438|gb|ADY99891.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M01-240355]
          Length = 470

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          +AHN++FD  F+    +         S  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192


>gi|325140605|gb|EGC63125.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis CU385]
          Length = 469

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 27  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 83

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          +AHN++FD  F+    +         S  + +
Sbjct: 84  DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 139

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 140 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 191


>gi|325136504|gb|EGC59108.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M0579]
          Length = 469

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 27  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 83

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          +AHN++FD  F+    +         S  + +
Sbjct: 84  DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 139

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 140 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 191


>gi|325134568|gb|EGC57212.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M13399]
 gi|325144729|gb|EGC67024.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M01-240013]
 gi|325205795|gb|ADZ01248.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M04-240196]
          Length = 470

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          +AHN++FD  F+    +         S  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192


>gi|325130506|gb|EGC53261.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis OX99.30304]
          Length = 470

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          +AHN++FD  F+    +         S  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192


>gi|319410698|emb|CBY91078.1| putative DnaQ-like exonuclease [Neisseria meningitidis WUE 2594]
          Length = 461

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          +AHN++FD  F+    +         S  + +
Sbjct: 76  DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 132 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 183


>gi|308389143|gb|ADO31463.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           alpha710]
          Length = 461

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          +AHN++FD  F+    +         S  + +
Sbjct: 76  DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 132 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 183


>gi|261392288|emb|CAX49811.1| putative DnaQ-like exonuclease [Neisseria meningitidis 8013]
          Length = 470

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          +AHN++FD  F+    +         S  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192


>gi|254672325|emb|CBA05474.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria
           meningitidis alpha275]
          Length = 312

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          +AHN++FD  F+    +         S  + +
Sbjct: 76  DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 132 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 183


>gi|254670274|emb|CBA05558.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria
           meningitidis alpha153]
          Length = 461

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          +AHN++FD  F+    +         S  + +
Sbjct: 76  DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 132 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 183


>gi|15677307|ref|NP_274462.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|7226692|gb|AAF41810.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|316984587|gb|EFV63552.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Neisseria meningitidis H44/76]
 gi|325199934|gb|ADY95389.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis H44/76]
          Length = 470

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          +AHN++FD  F+    +         S  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192


>gi|15641021|ref|NP_230652.1| ribonuclease T [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|227081180|ref|YP_002809731.1| ribonuclease T [Vibrio cholerae M66-2]
 gi|254848136|ref|ZP_05237486.1| ribonuclease T [Vibrio cholerae MO10]
 gi|298498880|ref|ZP_07008687.1| ribonuclease T [Vibrio cholerae MAK 757]
 gi|9655469|gb|AAF94167.1| ribonuclease T [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|227009068|gb|ACP05280.1| ribonuclease T [Vibrio cholerae M66-2]
 gi|254843841|gb|EET22255.1| ribonuclease T [Vibrio cholerae MO10]
 gi|297543213|gb|EFH79263.1| ribonuclease T [Vibrio cholerae MAK 757]
          Length = 243

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L            T    + P  G      AL+  G
Sbjct: 39  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                  +  +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 99  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 159 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 218

Query: 176 VGGSQIN 182
                + 
Sbjct: 219 NQWKALG 225


>gi|218768453|ref|YP_002342965.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491]
 gi|121052461|emb|CAM08798.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491]
          Length = 470

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          +AHN++FD  F+    +         S  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192


>gi|317505660|ref|ZP_07963563.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM 15606]
 gi|315663245|gb|EFV03009.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM 15606]
          Length = 901

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
           +FD ETTGLD  +D I++I AV+L + +  
Sbjct: 509 IFDTETTGLDVFSDDILQIAAVQLKNGAVV 538


>gi|51849608|dbj|BAD42331.1| DNA helicase RecG [Nannochloris bacillaris]
          Length = 1341

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           IVFD+ETTGL  + D  +EI A    +   + RTF   + 
Sbjct: 137 IVFDLETTGLSKEKDHPVEIAA----EAPLSGRTFSTLIR 172


>gi|325279480|ref|YP_004252022.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
 gi|324311289|gb|ADY31842.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
          Length = 190

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 62/182 (34%), Gaps = 16/182 (8%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            + FD ETTGL  + +          R++++  +   D      +  V + P G    PE
Sbjct: 2   YLFFDTETTGLPKRWNAPVTDLENWPRLVQLAWIMYDDRGNMLESRDVIVKPEGFTIPPE 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV---GFINAELQRINK 115
           A ++HGIT    ++K        E +    ++    + HN  FD    G     L+ +  
Sbjct: 62  ASRVHGITTLVAREKGEPLQEVMEQFARKIDEATALVGHNISFDECIVGAEFERLRMMTT 121

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL---DSHLLSDVYI 172
             L P      LS    K P  +   +         +       A     D    +  + 
Sbjct: 122 LFLKPKYCTMKLSTDYCKLPGKKGFKSPRLAELHQVLFGSGFDNAHNALADVEATARCFW 181

Query: 173 KM 174
           ++
Sbjct: 182 EL 183


>gi|153829717|ref|ZP_01982384.1| Gp39 [Vibrio cholerae 623-39]
 gi|148874796|gb|EDL72931.1| Gp39 [Vibrio cholerae 623-39]
          Length = 192

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 61/178 (34%), Gaps = 23/178 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ETTGLDSK+ +I+E+ A+           +   + P G     EA ++HGIT+  +
Sbjct: 11  ILDTETTGLDSKS-QIVEVTAICAKSGELI---YSSLVRPQG-FIPAEATRIHGITNSDV 65

Query: 71  KDKPSF------------------SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            D P+F                   +   +   F           +      +   + + 
Sbjct: 66  ADAPTFLDIIYPLSLALRNRTGIIYNADFDSRMFIQSYERNLQISHLDLRSAYFALKHKL 125

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +N                          L + C++ GI IS  + H AL D  +   +
Sbjct: 126 LNSQCAMNWYAQFWGEFDTTNGGYRWQRLTNACQQQGIDISDLTAHRALADCEMTRRL 183


>gi|330004210|ref|ZP_08304836.1| exonuclease [Klebsiella sp. MS 92-3]
 gi|328536727|gb|EGF63048.1| exonuclease [Klebsiella sp. MS 92-3]
          Length = 180

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 61/165 (36%), Gaps = 6/165 (3%)

Query: 12  FDIETTGLD-SKNDRIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            DIETTGLD     +IIEI  V  EL    K N    +   P  R    +A  +H I+ E
Sbjct: 7   IDIETTGLDVYSGHKIIEIALVSYELETSRKINEV-SLRFNP-RRNIDAKAQAVHHISLE 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P F    +            W+AHN +        +  R     L    +IDT+ 
Sbjct: 65  MLADCPLFEDKAASLAKA-LAAADVWVAHNGRQFDIPFITKQMRDCGVELIQRPLIDTMD 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                       L  L    G        HGAL D+ L+   +IK
Sbjct: 124 ARWACESGKIPRLQELAVAMGFVYDEEKAHGALYDTDLMMQCFIK 168


>gi|259908542|ref|YP_002648898.1| ribonuclease T [Erwinia pyrifoliae Ep1/96]
 gi|224964164|emb|CAX55671.1| Ribonuclease T [Erwinia pyrifoliae Ep1/96]
 gi|283478503|emb|CAY74419.1| ribonuclease T [Erwinia pyrifoliae DSM 12163]
          Length = 219

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 66/186 (35%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP--NGRKNSPEALKLH 63
           +V D+ET G D+K + ++EI AV L      + + + T    + P               
Sbjct: 20  VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDDTLHFHVEPFAGSVLLPEALTFNG 79

Query: 64  GITDEF-------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
                         +   +   +  +         A  +AHNA FD+ F+NA  +R +  
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L   C   G+       H AL D+   +D++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLAKACHAAGMAFDSAQAHSALYDTLQTADLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|153826601|ref|ZP_01979268.1| DNA polymerase III subunit epsilon [Vibrio cholerae MZO-2]
 gi|149739613|gb|EDM53833.1| DNA polymerase III subunit epsilon [Vibrio cholerae MZO-2]
          Length = 233

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 54/184 (29%), Gaps = 16/184 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57
           +  D ETTGL+++ D I+ IG V         N+     + P           +G  +S 
Sbjct: 45  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQARYWLVKPSQPLEEGSIVFHGITHSE 104

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                          +  +  I    +     +    I+ N   +            +  
Sbjct: 105 LQHAQAPEQVLKELLEALYGKIVVVHFRHIEREFLRQISLNIWDEAIEFPVLDTLEIERQ 164

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   +      I RR  PS R        R    +   S H AL D+   ++++      
Sbjct: 165 LLDKQRSLWQRITRRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 220

Query: 178 GSQI 181
               
Sbjct: 221 HLPP 224


>gi|153212279|ref|ZP_01948067.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           1587]
 gi|124116657|gb|EAY35477.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           1587]
          Length = 236

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 55/184 (29%), Gaps = 16/184 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57
           +  D ETTGL+++ D I+ IG V         N+     + P           +G  +S 
Sbjct: 48  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQARYWLVKPSQPLEEGSIVFHGITHSE 107

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                          +  +  I    +     +    I+ N   +            +  
Sbjct: 108 LQHAQAPEQVLKELLEALYGKIVVVHFRHIEREFLRQISLNIWDEAIEFPVLDTLEIERQ 167

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   +      IARR  PS R        R    +   S H AL D+   ++++      
Sbjct: 168 LLDKQRSLWQRIARRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 223

Query: 178 GSQI 181
               
Sbjct: 224 HLPP 227


>gi|262402653|ref|ZP_06079214.1| ribonuclease T [Vibrio sp. RC586]
 gi|262351435|gb|EEZ00568.1| ribonuclease T [Vibrio sp. RC586]
          Length = 224

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L            T    + P  G      AL+  G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                  +  +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 80  IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         + A       +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTAALSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 199

Query: 176 VGGSQIN 182
                + 
Sbjct: 200 NRWKALG 206


>gi|261211954|ref|ZP_05926240.1| ribonuclease T [Vibrio sp. RC341]
 gi|260838562|gb|EEX65213.1| ribonuclease T [Vibrio sp. RC341]
          Length = 224

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L            T    + P  G      AL+  G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                  +  +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 80  IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         + A       +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTAALSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 199

Query: 176 VGGSQIN 182
                + 
Sbjct: 200 NRWKALG 206


>gi|170758360|ref|YP_001787672.1| putative exonuclease [Clostridium botulinum A3 str. Loch Maree]
 gi|169405349|gb|ACA53760.1| putative exonuclease [Clostridium botulinum A3 str. Loch Maree]
          Length = 200

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 15/177 (8%)

Query: 7   MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-S 56
           M  I+FD+E    +   +          II+IGA++L +   T  TF   + P    N +
Sbjct: 1   MNYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALIKPEIYSNLN 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAELQRIN 114
           P    L  +T + L     F  ++ +F +F N+              ++       +   
Sbjct: 58  PFVKNLTNLTMDSLNKANPFREVYKDFLEFLNKDKNILCIWGMTDMKELFRNIVYYELDT 117

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +        +   +     +P S N   S          +   H A  D+   ++V+
Sbjct: 118 ESMPKEYINVQAYTGKYLNYPKSINVGLSNAVELFHITKNNDFHNAFNDAFYTAEVF 174


>gi|170727178|ref|YP_001761204.1| exonuclease RNase T and DNA polymerase III [Shewanella woodyi ATCC
           51908]
 gi|169812525|gb|ACA87109.1| Exonuclease RNase T and DNA polymerase III [Shewanella woodyi ATCC
           51908]
          Length = 226

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 1/171 (0%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             D+E TGLD++ D+I+ IG V +       ++     +   G       +         
Sbjct: 45  AIDLEMTGLDAQFDQILSIGIVPIEKGRLILSKAEHKLVKIEGSVGQSATIHGILDHHLN 104

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
               P  +  +           A     +  F    ++   ++        +  I+   +
Sbjct: 105 SAVSPEEAMTWFLERCQGQMLVAHHSPLDLAFLQKGLSTHFRQRVTLMAIDTLAIEKRRL 164

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            R+        L     R    +   + H AL+D+    ++ +  +    Q
Sbjct: 165 MRQHEVLKEGALRLGASRARYGLPVYAAHNALIDAIACGELLLAQISAIGQ 215


>gi|70726060|ref|YP_252974.1| hypothetical protein SH1059 [Staphylococcus haemolyticus JCSC1435]
 gi|68446784|dbj|BAE04368.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 219

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 9/178 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D ET   + K   I  +G V++++      +F   + P     S   +++HGIT E
Sbjct: 41  FIALDFET--ANGKRTSICSVGMVKVVNNEIV-ESFYTLVNPFD-YFSQTNIEVHGITPE 96

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D PSF  +F     F ++     +AHNA FD+  ++  L+++N +            
Sbjct: 97  DVIDAPSFEYVFPYMMQFIDK--LPVVAHNAAFDMNVLHQSLKQLNIETPSMIYFCSYQL 154

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
             R                    +     H AL D+   + +  +++     +    +
Sbjct: 155 AKRTIDAYRYGL---KHLMKHYKLDFHGHHDALNDAKACAMITFRLLKHYDNLQSMLQ 209


>gi|89073343|ref|ZP_01159867.1| ribonuclease T [Photobacterium sp. SKA34]
 gi|89050830|gb|EAR56304.1| ribonuclease T [Photobacterium sp. SKA34]
          Length = 221

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 72/202 (35%), Gaps = 14/202 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L      + K   T    + P  G     EAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVSPFEGAILHKEALDFNG 79

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                     +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 80  IRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHSFVMAASERAKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                       + A       +  L   C+   I   +R  H AL D+   ++++ +++
Sbjct: 140 KRNPFHPFATFDTAALSGLAFGQTVLAKACQTANIPFDNREAHSALYDTERTAELFCEIV 199

Query: 176 VGGSQINFGFKTNEDRFFKEEK 197
               ++     T       +  
Sbjct: 200 NKWKKLGGWPLTAPQTDESDNN 221


>gi|227432020|ref|ZP_03914039.1| DNA-directed DNA polymerase III [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352218|gb|EEJ42425.1| DNA-directed DNA polymerase III [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 177

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 5/165 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + +    + I  V + D    ++ F   + P     S     +HG+ 
Sbjct: 1   MNFVAMDFET--ANREKHSAVSIALVIVRDNQVVDK-FYSLIKPET-TFSSYNTAIHGLH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P F     +    F  +N   +AHNA FD   +   LQ  + D      +   
Sbjct: 57  RQDVADAPKF-PEVWQTISPFFTENKLVVAHNASFDNSILKGTLQYYDIDEPHYLLLDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +  +       + LN++    GIT+ H         +     +Y
Sbjct: 116 QTSRKLFPNFENHKLNTVAGNLGITLDHHHNALDDAVAAANILIY 160


>gi|221316927|ref|YP_002533071.1| bacteriophage 186 Orf81-like protein [Bacillus cereus Q1]
 gi|221243259|gb|ACM15967.1| bacteriophage 186 Orf81-like protein [Bacillus cereus Q1]
          Length = 288

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 67/179 (37%), Gaps = 11/179 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I KNK   I+ D ETTGL      I+EI A++L   +        F+ P       ++ K
Sbjct: 120 IEKNKDNYIILDTETTGLG-LGHEIVEIAAIDLYGNTL----LNTFVTP-TIPIPADSTK 173

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGITD+ +KD PS+   + +       +                  E+  I    L   
Sbjct: 174 IHGITDDMVKDAPSWEETYMKLLTISQGKTILIYNAAFDIPKISYTCEVHNIAPKKLKSE 233

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            I++  +              +     G   SHR+ +       +L +++ ++    +Q
Sbjct: 234 CIMELYAEYIDSQYWVPLSEAA-----GTITSHRAINDCKSVLIVLENIWNEIQHTLNQ 287


>gi|197261475|ref|YP_002154290.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage
           LMA2]
 gi|197244565|emb|CAR31299.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage
           LMA2]
          Length = 184

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 7   MRKIVFDIETTGLDS-------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   V+D ETTGL         K  RIIE   V        +     F+C  G       
Sbjct: 1   MIFAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGEKILDEV--EFICNPGIVIEEII 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+ G+ +E L   PSF     +  DF   +    IAHN  FD   +  +L R      +
Sbjct: 59  TKITGLKNEDLIKHPSFLDQRQKVRDF-FSRADANIAHNLPFDKFMLTCDLARGKFGLDE 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +     +       P   + +            +  KH AL D  LL +V  +M
Sbjct: 118 VNFPSLDICTVEESAPLFGHRMRLQHLYEHYCGPYVQKHRALDDVRLLHEVCKRM 172


>gi|90022074|ref|YP_527901.1| ribonuclease T [Saccharophagus degradans 2-40]
 gi|89951674|gb|ABD81689.1| RNAse T [Saccharophagus degradans 2-40]
          Length = 231

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP---NGRKNSPEALKL 62
           ++ D+ET G +S  D ++EI AV L    D     + TF   + P      + S      
Sbjct: 26  VIVDVETGGFNSHTDALLEIAAVTLRMDEDGVLHRHETFDFHVDPFEGANIEQSALDFTG 85

Query: 63  HGITDEFLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
             +  +     P             +         A  +AHNA FD+GF+NA   R +  
Sbjct: 86  IDLDSDDRCAVPEDIAINEIFRSVRKAVKENGCNRAVMVAHNAHFDLGFVNAASNRCDVK 145

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L   C+   I  S+R  H A  D+   +D++  ++ 
Sbjct: 146 RNPFHPFSCFDTATLSGLAFGHTVLARACQLAKIEFSNREAHSAAYDAEKTADLFCTIVN 205

Query: 177 GGSQIN 182
               + 
Sbjct: 206 RWKDLG 211


>gi|254286611|ref|ZP_04961567.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           AM-19226]
 gi|150423369|gb|EDN15314.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           AM-19226]
          Length = 236

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 54/184 (29%), Gaps = 16/184 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57
           +  D ETTGL+++ D I+ IG V         N+     + P           +G  +S 
Sbjct: 48  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQARYWLVKPSQPLEEGSIVFHGITHSE 107

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                          +  +  I    +     +    I+ N   +            +  
Sbjct: 108 LQHAQAPEQVLKELLETLYGKIVVVHFRHIEREFLRQISLNIWDEAIEFPVLDTLEIERQ 167

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   +      I RR  PS R        R    +   S H AL D+   ++++      
Sbjct: 168 LLDKQRSLWQRITRRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 223

Query: 178 GSQI 181
               
Sbjct: 224 HLPP 227


>gi|38234148|ref|NP_939915.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200410|emb|CAE50098.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           diphtheriae]
          Length = 448

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 9/182 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEALKLHGIT 66
            +  D+ETT  +S    I +IGA ++ D      T +    P G         + +HGIT
Sbjct: 105 FVAVDVETT--NSDWGSICQIGAAKVRDGHVV-ETKEWLCTPPGDLNSFDEANIAIHGIT 161

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +   PSF+  + +F D     +    AHNA+FD+       Q  +      +     
Sbjct: 162 ADMVATAPSFAECYDQFAD--FAGDLPLAAHNAQFDMTAFLRATQAADIRLRTTNFGCSL 219

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            +      P + + L ++ +   +    R+ H A  D+   + + I +    +     F 
Sbjct: 220 AAARAAHLPIANHKLPTVSQHLHVE--LRNHHNACADAEACAGILIALTQRLNTEITDFT 277

Query: 187 TN 188
           + 
Sbjct: 278 SA 279


>gi|325103944|ref|YP_004273598.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM
           12145]
 gi|324972792|gb|ADY51776.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM
           12145]
          Length = 315

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 68/184 (36%), Gaps = 7/184 (3%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  R + F D+E TG++   DRI+EI  +++             + P       E  
Sbjct: 1   MKLNLKRPLAFFDLEATGVNLGIDRIVEISILKINVDGSEEVKTHR-INP-TIPIPYEVS 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI D+ ++++P+F  +  E  DF  + +      N       +   L+      LD 
Sbjct: 59  IIHGIYDKDIENEPTFKDLAQEIADFIGDADLAGYNSNKFDIPMLMEEFLKAGVNFDLDN 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              +D  +I  +              ++       + H A  D+    +V +  +     
Sbjct: 119 RHFVDVQNIFHQ----MEQRTLKAAYKFYCDKEIVNAHSAEADTRATYEVLLAQLKKYEG 174

Query: 181 INFG 184
            ++ 
Sbjct: 175 HDWE 178


>gi|307565507|ref|ZP_07627990.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii
           CRIS 21A-A]
 gi|307345787|gb|EFN91141.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii
           CRIS 21A-A]
          Length = 183

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 9/170 (5%)

Query: 5   NKMRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N +  I  D ET T   +K   I E G   +        T    + P   + S   +++H
Sbjct: 2   NNINFIAIDFETAT---AKRSSICEAGICVVKGGKVV-ETKSWLVRPEDNRYSYWNIQIH 57

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI  +     P+F  ++ E   +  +     +AHNA FD+  I   LQ  +    D    
Sbjct: 58  GIRPQDTAYAPTFPKVWEEITTYLRD-CPVLVAHNAAFDMSCIRHTLQLHHLPCPDIDYY 116

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +                      +IS+ + H A  D+ + + ++++
Sbjct: 117 CSLRAARHIYDFGCNTLD---YLCDHFSISYGTHHRAGDDAEMCARLFLQ 163


>gi|307328999|ref|ZP_07608167.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
          violaceusniger Tu 4113]
 gi|306885361|gb|EFN16379.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
          violaceusniger Tu 4113]
          Length = 240

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
          FD+ETTG D +  RI+    VE+ D     R  +    P 
Sbjct: 11 FDLETTGTDPRTSRIVTAAVVEVRDGEPIGRR-EWLADPQ 49


>gi|262165240|ref|ZP_06032977.1| ribonuclease T [Vibrio mimicus VM223]
 gi|262024956|gb|EEY43624.1| ribonuclease T [Vibrio mimicus VM223]
          Length = 224

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L    + +     T    + P  G      AL+  G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGNLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                  +  +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 80  IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 199

Query: 176 VGGSQIN 182
                + 
Sbjct: 200 NQWKALG 206


>gi|188589093|ref|YP_001920974.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188499374|gb|ACD52510.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 243

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 72/229 (31%), Gaps = 16/229 (6%)

Query: 7   MRKIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KN 55
           M  IV+D+E    + +             +I+IGAV+L    +   TF   + P    + 
Sbjct: 1   MNYIVYDLE---FNHQYSKDDKASNITFEVIQIGAVKLNSNLEVVSTFNRLIKPTVHTEI 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
            P    L  IT E +  +  FS ++ +F  F   +               +         
Sbjct: 58  HPFIKDLTQITTEMVNSEKYFSDVYDDFIKFIGNKEFTVCIWGTSDIKELLKNVKFHNLE 117

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               L     +  L+    K              +      +  H A  D++  + ++ K
Sbjct: 118 EIYDLRKYIDVQNLASKYIKTQKGTKVGLKAAIEFFNLPIEKEFHDAFNDAYYTAQIFKK 177

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
           +     + +        R  + + K        + +K    ++++EE  
Sbjct: 178 LYTSKVKSSTYNNPYSKRISESKPKVDTKGLFRQFEKMYSKKLSEEEKK 226


>gi|149190366|ref|ZP_01868638.1| ribonuclease T [Vibrio shilonii AK1]
 gi|148835745|gb|EDL52710.1| ribonuclease T [Vibrio shilonii AK1]
          Length = 241

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 73/198 (36%), Gaps = 14/198 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L        +        + P  G     EAL+  G
Sbjct: 44  VVVDVETAGFNAKTDALLEICAITLTMDDQGNLQPASVLHFHIEPFEGANLEKEALEFTG 103

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F   +              +  +     +   A  +AHNA FD  F++A  +R   
Sbjct: 104 IRDPFSPLRGAVSEQEALKEIYKVIRKEQKQHDCSRAIMVAHNANFDHSFVSAANERAKL 163

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++ +++
Sbjct: 164 KRVPFHPFATFDTATLSGLAYGQTVLAKACKAAGMEFDNREAHSALYDTQKTAELFCRIV 223

Query: 176 VGGSQINFGFKTNEDRFF 193
                +      +E    
Sbjct: 224 NKWKALGGWPIVDEQAQE 241


>gi|21672469|ref|NP_660536.1| ribonuclease T [Buchnera aphidicola str. Sg (Schizaphis graminum)]
 gi|25009131|sp|Q8K9V5|RNT_BUCAP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|21623085|gb|AAM67747.1| ribonuclease T [Buchnera aphidicola str. Sg (Schizaphis graminum)]
          Length = 219

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIET G + K D ++EI  + L                 + P  G   + +A+  + 
Sbjct: 20  VVIDIETAGFNPKTDAVLEIALITLKMDKLGWLHKEDILHFHIKPFKGSIINSDAIAFNK 79

Query: 65  ITDEFLKD--------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 S     +             +AHNA FD  F+ A +QR+   
Sbjct: 80  IDPFNPLRGAISETLAIESILEKVNYGIKIQGCTRGIVVAHNAHFDHNFLMAAIQRVKIK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L   CK  G++  +   H AL DS   ++++ K++ 
Sbjct: 140 NNPFHPFVTFDTAALSGLAVGQTVLAKACKAIGLSFDNNQAHSALYDSLQTANLFCKIVN 199

Query: 177 GGSQIN 182
               + 
Sbjct: 200 RWKGLG 205


>gi|260582581|ref|ZP_05850371.1| ribonuclease T [Haemophilus influenzae NT127]
 gi|319775811|ref|YP_004138299.1| ribonuclease T [Haemophilus influenzae F3047]
 gi|329123653|ref|ZP_08252213.1| ribonuclease T [Haemophilus aegyptius ATCC 11116]
 gi|260094392|gb|EEW78290.1| ribonuclease T [Haemophilus influenzae NT127]
 gi|317450402|emb|CBY86618.1| ribonuclease T [Haemophilus influenzae F3047]
 gi|327469852|gb|EGF15317.1| ribonuclease T [Haemophilus aegyptius ATCC 11116]
          Length = 229

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   +PE+LK +G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +        + Q +  +AHNA FD  F+ A  +R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAERTGVK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + +       +  L   C+   I    +  H AL D+   + ++  M+ 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQAAKIPFDGKQAHSALYDTERTAKLFCYMVN 202

Query: 177 GGSQIN 182
               + 
Sbjct: 203 HLKDLG 208


>gi|88797304|ref|ZP_01112894.1| putative DNA polymerase, exonuclease activity [Reinekea sp. MED297]
 gi|88780173|gb|EAR11358.1| putative DNA polymerase, exonuclease activity [Reinekea sp. MED297]
          Length = 192

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 70/178 (39%), Gaps = 7/178 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGI 65
           R +V D+E TGL+++ D II  G V +     + +     +  P     S   A     +
Sbjct: 16  RVLVLDLEMTGLNAQEDSIISAGWVVIEQGRIELSLAGHQYFQPTAMMASDVSASAHIHM 75

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121
             + L ++              +     W+ H+A  D+ F+    QR++       ++ +
Sbjct: 76  ITDHLLEQQGQPLGHWLQRLNGDLLADRWVFHHAPIDMAFLKMFSQRLDIVLPSVTIEDT 135

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +++    +     S +    + C+      ++R  H AL D+   +++Y+ +M    
Sbjct: 136 VLLEQKRFSDLTLESQQQLSLTACRARHRLPAYRQ-HHALSDALATAELYLALMTDSQ 192


>gi|87302291|ref|ZP_01085116.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp.
          WH 5701]
 gi|87283216|gb|EAQ75172.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp.
          WH 5701]
          Length = 297

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVEL 34
          R ++ D ETTGLD + D  IE+GAV  
Sbjct: 66 RLLILDTETTGLDPERDHCIEVGAVLF 92


>gi|147675730|ref|YP_001216478.1| ribonuclease T [Vibrio cholerae O395]
 gi|153216049|ref|ZP_01950254.1| ribonuclease T [Vibrio cholerae 1587]
 gi|153826220|ref|ZP_01978887.1| ribonuclease T [Vibrio cholerae MZO-2]
 gi|124114499|gb|EAY33319.1| ribonuclease T [Vibrio cholerae 1587]
 gi|146317613|gb|ABQ22152.1| ribonuclease T [Vibrio cholerae O395]
 gi|149740080|gb|EDM54249.1| ribonuclease T [Vibrio cholerae MZO-2]
 gi|227012823|gb|ACP09033.1| ribonuclease T [Vibrio cholerae O395]
          Length = 243

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L            T    + P  G      AL+  G
Sbjct: 39  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                  +  +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 99  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 159 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 218

Query: 176 VGGSQIN 182
                + 
Sbjct: 219 NQWKALG 225


>gi|224372066|ref|YP_002606231.1| predicted type III DNA polymerase PolC [Desulfobacterium
           autotrophicum HRM2]
 gi|223694785|gb|ACN18067.1| predicted type III DNA polymerase PolC [Desulfobacterium
           autotrophicum HRM2]
          Length = 290

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 48/167 (28%), Gaps = 5/167 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D+ET   +     I +IG     +     R +   + P      P  + +HGI 
Sbjct: 1   MEFVSIDVET--ANPDMASICQIGIACFNNGQL-EREWSSLVNP-RDYFDPINVSVHGIN 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +   PSF  I+ E     + +       +              ++   +        
Sbjct: 57  ETSVSSAPSFEEIYHEIRSLLSGKICV-SHTHFDRISMDKAIRKHSLDPIDVVWLDSARI 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              A  +       L ++CK  G    H            +    ++
Sbjct: 116 ARRAWEECAWKGYGLANVCKIIGFEFKHHDALEDAKACGAIVHAAVE 162


>gi|148827473|ref|YP_001292226.1| ribonuclease T [Haemophilus influenzae PittGG]
 gi|166228566|sp|A5UGD7|RNT_HAEIG RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|148718715|gb|ABQ99842.1| ribonuclease T [Haemophilus influenzae PittGG]
          Length = 229

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   +PE+LK +G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +        + Q +  +AHNA FD  F+ A  +R    
Sbjct: 83  IDIHNPLRGAVSELNAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + +       +  L   C+   I    +  H AL D+   + ++  M+ 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQAAKIPFDGKQAHSALYDTERTAKLFCYMVN 202

Query: 177 GGSQIN 182
               + 
Sbjct: 203 HLKDLG 208


>gi|120555417|ref|YP_959768.1| ribonuclease T [Marinobacter aquaeolei VT8]
 gi|166228568|sp|A1U3L2|RNT_MARAV RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|120325266|gb|ABM19581.1| RNAse T [Marinobacter aquaeolei VT8]
          Length = 221

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++EI AV L      + +   T    + P  G      AL   G
Sbjct: 21  VVVDVETAGFNPERDALLEIAAVMLTMDEDGWLRRGETHVQQIDPFEGANLEQSALDFTG 80

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I     + +            S   +     + + A  + HNA FD  F+ A   R +  
Sbjct: 81  IDPWNPEREAVPEREGLSEIFSPIRKAVKEHDCKRAVLVGHNATFDHNFVFAAALRADIK 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L   CK  GI  S++  H A  D+   +D++  ++ 
Sbjct: 141 RNPFHPFSTFDTATLAGLAYGHTVLAQACKLAGIPFSNKEAHSAAYDAEKTADLFCGIVN 200

Query: 177 GGSQIN 182
              ++ 
Sbjct: 201 RWRELG 206


>gi|309379715|emb|CBX21704.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 326

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +       +L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPK-KPIPQFVAELTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          IAHN++FD  F+    +         S  + +
Sbjct: 76  DGMVVDAPVFAEIAGELFSVLKG--CVLIAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 132 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 183


>gi|262402358|ref|ZP_06078919.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
 gi|262351140|gb|EEZ00273.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
          Length = 233

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50
          +  D ETTGL+++ D I+ IG V          +     + P
Sbjct: 45 VALDFETTGLNAQQDDILSIGLVPFNTQRIALKQARYWLVKP 86


>gi|220936287|ref|YP_002515186.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997597|gb|ACL74199.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sp. HL-EbGR7]
          Length = 240

 Score = 52.6 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             D+ETTG+D++ D I+ IG V            +   + P  R  S  ++K H IT   
Sbjct: 52  ALDLETTGMDAERDVIVSIGIVPFDLRRIRPAEGYYWVVKPP-RPLSEASIKFHRITHSE 110

Query: 70  LKDKP 74
           +   P
Sbjct: 111 VAAAP 115


>gi|110805628|ref|YP_689148.1| ribonuclease T [Shigella flexneri 5 str. 8401]
 gi|123147001|sp|Q0T4C2|RNT_SHIF8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|110615176|gb|ABF03843.1| RNase T [Shigella flexneri 5 str. 8401]
          Length = 215

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPNDPDRGAVSEYEALHEICKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L+  C+  G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|23012539|ref|ZP_00052599.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 218

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 26/196 (13%)

Query: 8   RKIVFDIETTGLD----------SKNDR----IIEIGAVELL---DYSKTNRTFQVFLCP 50
           R I  D ETTG             K  R    +IEIG +EL+   +  KT +++Q  + P
Sbjct: 12  RIIAIDAETTGFQVPTPAEIRKMPKGLRLPGIVIEIGCLELVRSEEGWKTGKSWQRRIQP 71

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
            G   S  ++++HGI+   LK+ PSF  I  EF  F        +AH+A+ ++ F+N E 
Sbjct: 72  GG-PVSKASVEVHGISPAELKNAPSFRDILDEFEAFI--GQDVLLAHSAENEMAFLNFEY 128

Query: 111 QRINKDPLDPS-----RIIDTLSIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDS 164
            R  +   D         + T  ++R+  P     L+ LC R  +        HGALLD+
Sbjct: 129 ARAGRCGFDEMIFSVDDFVCTQDLSRQFFPGVPGSLDVLCDRLWVDRSDRFEHHGALLDA 188

Query: 165 HLLSDVYIKMMVGGSQ 180
            L ++ ++KM  G  Q
Sbjct: 189 ILTAEAFMKMAGGFVQ 204


>gi|229051643|ref|ZP_04195113.1| exonuclease [Bacillus cereus AH676]
 gi|228721754|gb|EEL73228.1| exonuclease [Bacillus cereus AH676]
          Length = 287

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 11/144 (7%)

Query: 5   NKM-----RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           NKM     + ++ D ETTGL +  D+IIEI  ++L             + P       EA
Sbjct: 122 NKMFINKDQFVILDTETTGL-TLRDQIIEISVIDLAGKIL----LNSLVKP-TIIIPAEA 175

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGIT+E + D PS+  I+ E  +    +            +         +      
Sbjct: 176 TSIHGITNEMVHDAPSWIEIYKELCEVTAGKTLLIYNAEFDLGMIESTCITNNVEFKSFK 235

Query: 120 PSRIIDTLSIARRKHPSSRNDLNS 143
            + I+   +           +  +
Sbjct: 236 STCIMKMYADFIDSKRWISLNDAT 259


>gi|160931331|ref|ZP_02078731.1| hypothetical protein CLOLEP_00168 [Clostridium leptum DSM 753]
 gi|156869715|gb|EDO63087.1| hypothetical protein CLOLEP_00168 [Clostridium leptum DSM 753]
          Length = 172

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 45/129 (34%), Gaps = 10/129 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDE 68
           ++ D ETT LD    RIIEI  +     + T        + P G     EA  +H I+ +
Sbjct: 17  VILDTETTDLD---GRIIEISII----DAATGTVLMDQLINPQGAPICAEARTVHHISPD 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P+F+ +     D   +     +A NA FD   I AE      D            
Sbjct: 70  DLATAPTFTQVRPRLEDVVAD--RVVMAWNAPFDRERIEAEYALAGLDAPAWPWCCLMRL 127

Query: 129 IARRKHPSS 137
            A       
Sbjct: 128 EASVMGCQW 136


>gi|289664483|ref|ZP_06486064.1| exonuclease, RNase T and DNA polymerase III [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 322

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 67/220 (30%), Gaps = 15/220 (6%)

Query: 10  IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I  D ETTGL+    D ++EI  V               +CP      PEA  +HGI+ +
Sbjct: 51  IFVDTETTGLNQDGRDEVLEIAIVNADGTIL----LNTLVCPARNTAWPEAQAIHGISPQ 106

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   PS+S +  +       +   +  +NA FD  F         +  +     ++   
Sbjct: 107 DVAGAPSWSGLLPKIASICAGKTVVF--YNAPFDTSFFPTRFFPNVECAMRSYSEVNPGH 164

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL-----LSDVYIKMMVGGSQINF 183
               K   S     S     G          A     L     L   Y  +         
Sbjct: 165 SGWVK--LSDAASESGYTSTGAFHRALEDALACRHIWLFGIPILKKTYPPLTNPRITAEL 222

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
             +    R    +   +  +  +  +       TK++ +E
Sbjct: 223 ALEAGGHRPLVFKALFIDQLRFVAINDVCVLW-TKDDREE 261


>gi|323143472|ref|ZP_08078155.1| putative DNA polymerase III, epsilon subunit [Succinatimonas hippei
           YIT 12066]
 gi|322416757|gb|EFY07408.1| putative DNA polymerase III, epsilon subunit [Succinatimonas hippei
           YIT 12066]
          Length = 321

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 75/221 (33%), Gaps = 12/221 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK---TNRTFQVFLCPNGRKNSPEALKLH 63
           +  D ETTG+D   ++IIE+G V +    D       +R +  F  P G+K   E  +L 
Sbjct: 79  VFLDTETTGMDCNQEKIIELGMVRVTYSFDRKLMLSIDRIYDEFEDP-GKKIPLEIQQLT 137

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            ITDE +          ++            +AHNAKFD  F +     ++      S  
Sbjct: 138 HITDEMVAG----HRFDNDSVSQILAGRPLVVAHNAKFDRPFFDRRFPTLSDLSWACSLS 193

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                                   Y    ++      L   H+  + +  ++    +  +
Sbjct: 194 GVNWDALGDNGRKLEFLCQVRGWFYDAHRAYDDCLALLWLMHIEPEAFEMLINSALRHEY 253

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI-TKEELDE 223
                   F  ++K    N       K  +  + +++E+ +
Sbjct: 254 KIYAVGSPFDIKDKLKALNYRFDPARKCWYINVQSEDEVKK 294


>gi|308050117|ref|YP_003913683.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
          DSM 9799]
 gi|307632307|gb|ADN76609.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
          DSM 9799]
          Length = 223

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 3  RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFL 48
          R+  M  +  D+E TGLD + D I+ I AV ++       +++   +
Sbjct: 33 REQPM--LALDLELTGLDVRQDAILSIAAVPIIRGRLVLAQSWHQLV 77


>gi|327483724|gb|AEA78131.1| Ribonuclease T [Vibrio cholerae LMA3894-4]
          Length = 224

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L            T    + P  G      AL+  G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                  +  +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 80  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGVEFDNREAHSALYDTQKTAELFCTIV 199

Query: 176 VGGSQIN 182
                + 
Sbjct: 200 NQWKALG 206


>gi|304310986|ref|YP_003810584.1| hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1]
 gi|301796719|emb|CBL44931.1| Hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1]
          Length = 300

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 2/157 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ETTGL++ +  I EIGAV+     +    F++F  P G        +L GITDE 
Sbjct: 36  IAIDFETTGLEASSAAITEIGAVKFKISGEIVDQFEMFAYP-GTPIPVRIQELTGITDEM 94

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +        ++ +F D+  +    +IAHNA F+  F+ A  ++  + P         +S 
Sbjct: 95  VTGCEPPLFVWKKFLDW-ADGANTFIAHNAPFEARFVRALYEKEGEMPNIYFIDTLQISR 153

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            R    SS +  N +  + G      +   A    + 
Sbjct: 154 NRLPEESSYSLKNLVKFKEGEPHRALADAKACSTLYC 190


>gi|160891538|ref|ZP_02072541.1| hypothetical protein BACUNI_03990 [Bacteroides uniformis ATCC 8492]
 gi|317478357|ref|ZP_07937521.1| exonuclease [Bacteroides sp. 4_1_36]
 gi|156858945|gb|EDO52376.1| hypothetical protein BACUNI_03990 [Bacteroides uniformis ATCC 8492]
 gi|316905516|gb|EFV27306.1| exonuclease [Bacteroides sp. 4_1_36]
          Length = 163

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 8/167 (4%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+     D ET   + +   +  +G V + D       +   + P     +    ++HG+
Sbjct: 1   MKDFAAIDFET--ANEQRTSVCSVGVVIVRDGEIV-DHYYSLIRPEPEYYTYWNTRVHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII- 124
           T    +D P F  ++ E            +AHN  FD   + A  +    D  D      
Sbjct: 58  TLADTQDAPIFPVVWQEIAPRIEG--LPLVAHNKAFDESCLKAVFRTYCMDYPDYEFYCT 115

Query: 125 -DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                 A +  P+ +    ++C  Y +   H +   A   + +   V
Sbjct: 116 LQASRRAIKGLPNYQLHTVAVCCGYQLEHHHHALADAEACAWIAKQV 162


>gi|325956898|ref|YP_004292310.1| ATP-dependent DNA helicase [Lactobacillus acidophilus 30SC]
 gi|325333463|gb|ADZ07371.1| ATP-dependent DNA helicase [Lactobacillus acidophilus 30SC]
 gi|327183677|gb|AEA32124.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1118]
          Length = 926

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 9/212 (4%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   +    II+ G   + +     +T+   + P+ R+     + L GI++
Sbjct: 10  FAVVDLETTGTQRENGHHIIQFGCAIIKNLKVV-KTYSFMINPH-REIPQSVVNLTGISN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIID 125
             ++ +  F     +       QN  ++AHN  FD+ F+N EL +   D L       ++
Sbjct: 68  GDVQKQKDFDFYAPKIVKIL--QNTVFVAHNVDFDLPFLNYELTQHGYDALTNKAIDTVE 125

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG- 184
              IA    PS +    +          H++   A   + LL  + IK +    Q     
Sbjct: 126 LAKIAFPTLPSYKLSDLTAQLEIKHLNPHKADSDAYGTAILLIKI-IKQLETLPQATLNT 184

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +      ++    +  I+   R +      
Sbjct: 185 LSSLAHGLIRDTSWVITTIADSLRQEKRPLPA 216


>gi|314976530|gb|EFT20625.1| exonuclease [Propionibacterium acnes HL045PA1]
          Length = 169

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 8/128 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETT LD    RIIEI  ++    +         + P G     EA  +H I+ + 
Sbjct: 17  VILDTETTDLD---GRIIEISIIDAATGTVLMN---QLINPQGAPIYAEARTVHHISPDD 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P+F+ +     D   +     +A NA FD G I AE      D             
Sbjct: 71  LATAPTFTQVRPRLEDVVAD--RVVMAWNAPFDQGRIEAEYGLAGLDAPAWPWCCLMRLE 128

Query: 130 ARRKHPSS 137
           A       
Sbjct: 129 AAMMGCRW 136


>gi|163814599|ref|ZP_02205988.1| hypothetical protein COPEUT_00750 [Coprococcus eutactus ATCC 27759]
 gi|158450234|gb|EDP27229.1| hypothetical protein COPEUT_00750 [Coprococcus eutactus ATCC 27759]
          Length = 227

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 10/175 (5%)

Query: 7   MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           MR +  D E   +DS+           IIEIGAV+L D      +F+ ++ P     +  
Sbjct: 9   MRYVFVDFEMNLIDSEHKQEKKICKSEIIEIGAVKLDDEYNEIDSFKSYVKPAYGNMASR 68

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFF--NEQNAEWIAHNAKFDVGFINAELQRINKD 116
            +KL GITDE L+  PS+      F ++    +    W  ++ +   G    +     + 
Sbjct: 69  IIKLTGITDEMLETAPSYEDAVGRFIEWCADADVIYAWSENDLRQLRGETRLKQYTHPEL 128

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               ++  D      R   +SR    S    Y       ++H AL D+   ++V+
Sbjct: 129 ERVFAKWQDFQKEYARMIGTSRRISLSDAVFYLGENFQGAEHDALWDARNTAEVF 183


>gi|325568813|ref|ZP_08145106.1| exonuclease [Enterococcus casseliflavus ATCC 12755]
 gi|325157851|gb|EGC70007.1| exonuclease [Enterococcus casseliflavus ATCC 12755]
          Length = 177

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 68/178 (38%), Gaps = 10/178 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + +      +  V + D       +   + P       + +++HGI 
Sbjct: 1   MNFIAMDFET--ANYQKHSACSLALVMVQDSKIVGE-YYTLIQPETEFF-WKNIQIHGIR 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +++ P F  ++ +   ++   +   +AHNA FD G +   L        +   +   
Sbjct: 57  PEDVQEAPKFPDVWKQIQQYYQLNSLI-VAHNAGFDTGVLAGCLDYYGLSQPNYLSLCTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            +  +     + + LN++C++  I     + H AL DS   + +   ++    +    
Sbjct: 116 RTSRKLYPEFTNHKLNTVCEQLQIP--LLNHHDALEDSRACAQI---LLRQEEEFGID 168


>gi|294140465|ref|YP_003556443.1| exonuclease [Shewanella violacea DSS12]
 gi|293326934|dbj|BAJ01665.1| exonuclease [Shewanella violacea DSS12]
          Length = 232

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 3  RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNG 52
          R N M     D+E TGLD  +D+I+ IG + +       +R     +  +G
Sbjct: 44 RANLM---ALDLEMTGLDPNHDQILSIGIIPIEAGMLKLDRAQHKLIRVHG 91


>gi|114562633|ref|YP_750146.1| ribonuclease T [Shewanella frigidimarina NCIMB 400]
 gi|122300177|sp|Q084K7|RNT_SHEFN RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|114333926|gb|ABI71308.1| RNAse T [Shewanella frigidimarina NCIMB 400]
          Length = 221

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL---DYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++  D ++EI    L    D     +RT    + P  G    P AL  +G
Sbjct: 20  VVIDVETAGFNANTDALLEIAVSLLKMNSDGVIVLDRTLHFNIEPFEGANLEPAALAFNG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                        +     +   +  +AHNA FD+GF+N  ++R    
Sbjct: 80  IDPTNPLRGAVDEKVAFLEIFKEVKKAQKAADCHRSIIVAHNAAFDLGFVNKAIERNGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L   CK  GI   ++  H AL D+   ++++  ++ 
Sbjct: 140 RSPFHPFASFDTATLAGLAIGHTVLAKACKMAGIDFDNKEAHSALYDTERTAELFCLIVN 199

Query: 177 GGSQIN 182
               + 
Sbjct: 200 RWKALG 205


>gi|315038483|ref|YP_004032051.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1112]
 gi|312276616|gb|ADQ59256.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1112]
          Length = 926

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 9/212 (4%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   +    II+ G   + +     +T+   + P+ R+     + L GI++
Sbjct: 10  FAVVDLETTGTQRENGHHIIQFGCAIIKNLKVV-KTYSFMINPH-REIPQSVVNLTGISN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIID 125
             ++ +  F     +       QN  ++AHN  FD+ F+N EL +   D L       ++
Sbjct: 68  GDVQKQKDFDFYAPKIVKIL--QNTVFVAHNVDFDLPFLNYELTQHGYDALTNKAIDTVE 125

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG- 184
              IA    PS +    +          H++   A   + LL  + IK +    Q     
Sbjct: 126 LAKIAFPTLPSYKLSDLTAQLEIKHLNPHKADSDAYGTAILLIKI-IKQLETLPQATLNT 184

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +      ++    +  I+   R +      
Sbjct: 185 LSSLAHGLIRDTSWVITTIADSLRQEKRPLPA 216


>gi|260881564|ref|ZP_05404714.2| helicase, UvrD/REP/exonuclease family protein [Mitsuokella
           multacida DSM 20544]
 gi|260848768|gb|EEX68775.1| helicase, UvrD/REP/exonuclease family protein [Mitsuokella
           multacida DSM 20544]
          Length = 874

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 4/164 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +VFD+E TG+D   D II+I  + L    K    F+  L     + S           
Sbjct: 512 NIVVFDVEATGVDPTRDEIIQIAGLRLGRDGKAKAEFKRLLR---ARRSVGDSYRVHKIS 568

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +                + A  + HN  +D+  + +EL R+   PL   R  DTL
Sbjct: 569 DAILQQEGEEPEAVLREFCAFAEGAVIVGHNVTYDLSILGSELARLGLPPLSYQRYYDTL 628

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            I RR +P+  N        +       + H A+ D    +++ 
Sbjct: 629 DIFRRFYPNLPNHKLEYLGEFCKVSHRST-HDAMDDVCATAEIL 671


>gi|225012865|ref|ZP_03703298.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium
           MS024-2A]
 gi|225002987|gb|EEG40964.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium
           MS024-2A]
          Length = 458

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 4/116 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +  +  K    F   + P          KL GI  +
Sbjct: 2   YAILDIETTGGKYDEEGITEIAIYKY-NGQKVVDQFSSLINPQKEIQP-FVEKLTGINSK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            L+  P F  +     +    ++   +AHNA FD   +  E +R+       S   
Sbjct: 60  MLRSAPKFYEVAKRIVE--LTEDCILVAHNASFDYRILQTEFRRLGFPFERKSICT 113


>gi|92115957|ref|YP_575686.1| exonuclease [Nitrobacter hamburgensis X14]
 gi|91798851|gb|ABE61226.1| Exonuclease [Nitrobacter hamburgensis X14]
          Length = 334

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IV D+ET   ++    I +IG VE++     ++   + + P+          +HGIT +
Sbjct: 6   FIVLDVET--ANADYASICQIGLVEVVAGEVVSQE-AILVNPDD-YFDGFNTSIHGITAD 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F  + +      +      I H+  FD   I+   +R   +     + +D   
Sbjct: 62  HVCGAPLFHEVHAALSQRLSGS---IIVHHGPFDRVSISRACERCGIESF-DVQWLDNQR 117

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           + RR          +L             H AL D+   ++++ + +      
Sbjct: 118 VVRRVWEQFSKSGYALKSLAAFFGIEFQHHDALQDAIATNEIFRRALNESGTT 170


>gi|224476576|ref|YP_002634182.1| hypothetical protein Sca_1089 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421183|emb|CAL27997.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 895

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 2/166 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   +  +     ++   +     +  P    L  I D+
Sbjct: 6   YAVVDLETTGNQKDYDDIIQIGITFVKGFEIVG-SYHSLIK-TDLEIPPFIQALTSIEDQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ +  E ++   +                   +   I   P      ++   
Sbjct: 64  MLTQAPYFNEVAEEIYELMKDSVFVAHNVAFDLTFLKKAFKKSNITYQPRKVIDTVELFK 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           IA     S +    +      +  +HR+   A   + L+   +  +
Sbjct: 124 IAFPTDKSYQLSELAEYHDIPLENAHRADEDAATTAKLMIKAFNVL 169


>gi|262276726|ref|ZP_06054519.1| exodeoxyribonuclease I [alpha proteobacterium HIMB114]
 gi|262223829|gb|EEY74288.1| exodeoxyribonuclease I [alpha proteobacterium HIMB114]
          Length = 473

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 2/92 (2%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCPNGRKNSPEALKLHG 64
          M  + +D ETTG  S  D+II++GA+ + D       F+    L P         L    
Sbjct: 1  MNYVFYDFETTGRSSTWDQIIQVGAILVNDTFDILDRFEARCSLKPGTVPEPGALLVNKT 60

Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
            D   K   S   +     + F + +     
Sbjct: 61 TPDMLKKTNLSHFGMVQMMKETFEKWSPAMFI 92


>gi|260772908|ref|ZP_05881824.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260612047|gb|EEX37250.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 238

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGLD   D II IG V   L      R     + P  +K    ++ +HGIT 
Sbjct: 48  FVAMDFETTGLDENKDEIITIGLVPFTLQRVYLKRAQHWIVRP-RQKLDEGSVIIHGITH 106

Query: 68  EFLKDKP 74
             +   P
Sbjct: 107 SDIMHAP 113


>gi|77360378|ref|YP_339953.1| DNA polymerase III subunit epsilon [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875289|emb|CAI86510.1| putative DNA polymerase III, epsilon subunit [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 236

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGLDS+ D I+ +G V           +    + P  R    E++ +HGIT 
Sbjct: 47  FVAMDFETTGLDSEADDIVSVGLVPFNLQRIYCKHSRHWVVQP-RRNLHEESIIIHGITH 105

Query: 68  EFLKDKPSFSS 78
             + D P F+ 
Sbjct: 106 SEVDDAPDFNR 116


>gi|28898888|ref|NP_798493.1| ribonuclease T [Vibrio parahaemolyticus RIMD 2210633]
 gi|260879442|ref|ZP_05891797.1| ribonuclease T [Vibrio parahaemolyticus AN-5034]
 gi|29611937|sp|P46232|RNT_VIBPA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|28807107|dbj|BAC60377.1| ribonuclease T [Vibrio parahaemolyticus RIMD 2210633]
 gi|308093530|gb|EFO43225.1| ribonuclease T [Vibrio parahaemolyticus AN-5034]
 gi|328474555|gb|EGF45360.1| ribonuclease T [Vibrio parahaemolyticus 10329]
          Length = 214

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 76/195 (38%), Gaps = 14/195 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L    +       T    + P  G     EAL+ +G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLRMDEEGVLHPASTIHFHIEPFEGANLEKEALEFNG 79

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F   +              +  +     +   A  +AHNA FD+ F+NA  +R   
Sbjct: 80  IRDPFSPLRGAVSEQEALKEIYKLIRKEQKASDCSRAIMVAHNAAFDLSFVNAANERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCGIV 199

Query: 176 VGGSQINFGFKTNED 190
                +      NE+
Sbjct: 200 NKWKALGGWPLVNEE 214


>gi|315221792|ref|ZP_07863704.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           anginosus F0211]
 gi|315189025|gb|EFU22728.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           anginosus F0211]
          Length = 819

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 84/185 (45%), Gaps = 9/185 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M ++ + +  V D+E T   S N +II++G V + +     +T++  + P+  K  P   
Sbjct: 1   MTQEKR-KYAVVDLEATSASS-NAKIIQVGIVLIENGQIV-KTYETDVNPH-EKLDPHIR 56

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+TD+ L+  P FS +  E ++   +  A ++AHN KFD   +        +     
Sbjct: 57  QLTGLTDKRLRKAPDFSQVAREIYELIED--AIFVAHNVKFDANLLA--EALFWEGFELV 112

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  +DT+ +A+   P+             + I  +  H AL D+   + +++K+     +
Sbjct: 113 TPRVDTVELAQVFFPTFEKYNL-GILCEQLDIPLKHAHTALADASATATLFLKIQEKIQK 171

Query: 181 INFGF 185
           +    
Sbjct: 172 LPKEL 176


>gi|312172307|emb|CBX80564.1| ribonuclease T [Erwinia amylovora ATCC BAA-2158]
          Length = 224

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D+K + ++EI AV L      + + + T    + P  G     EAL  +G
Sbjct: 22  VVIDVETAGFDAKTNALLEIAAVTLKMDSEGWLEKDETLHFNVEPFPGSVMLAEALAFNG 81

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +         A  +AHNA FD+ F+NA  +R +  
Sbjct: 82  IDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 141

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L   C   G++      H AL D+   +D++ +++ 
Sbjct: 142 RNPFHPFVTFDTAALSGLVLGQTVLAKACNAAGMSFDSAQAHSALYDTLQTADLFCELVN 201

Query: 177 GGSQIN 182
              ++ 
Sbjct: 202 RWKRLG 207


>gi|254293981|ref|YP_003060004.1| exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC
           49814]
 gi|254042512|gb|ACT59307.1| Exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC
           49814]
          Length = 298

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 65/229 (28%), Gaps = 11/229 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL---DYSKT--NRTFQVFLCPNGRKNSPEALKLHGIT 66
            D ETTGLD +   +IEI  V      +       +    F  P     S E  KL GIT
Sbjct: 45  IDTETTGLDYREAELIEIALVPFEYSTEGKLVTFGKALDQFQQPKS-PISEEITKLTGIT 103

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIID 125
           +E +  +        +     +   A   A +  F        + +      +D     +
Sbjct: 104 NEMVAGQKIDIPAVEQLIKESDLIIAHNAAFDRPFAERLTPAFKAKPWACSLVDIDWKEE 163

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                +    +  +       R  I      K  A             ++    +  +  
Sbjct: 164 GYESPKLSFLAMEHGFYYKAHRADIDCWATIKLLAQRLKTSGDRAMAHLLTSAREERWRI 223

Query: 186 KTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQT 230
                 F K++               + K  +  I  ++ +   + +++
Sbjct: 224 WATNTNFAKKDILKNRGYRWESGENGKPKSWYADIAAKDKEAELEFLKS 272


>gi|319955723|ref|YP_004166990.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM
           14237]
 gi|319424383|gb|ADV51492.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM
           14237]
          Length = 456

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +   +   ++ F   + P         + L GIT++
Sbjct: 2   YAILDIETTGGKYNEEGITEIAIHKFDGHQVVDQ-FISLVNPEKEIQP-FVVNLTGITNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            L   P F  +     +    +    IAHNA+FD   +  E +R+  +    +   
Sbjct: 60  MLVTAPKFYEVAKRIVE--ITEGTVLIAHNAQFDYRILRTEFRRLGFNFERKTICT 113


>gi|306829204|ref|ZP_07462394.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           ATCC 6249]
 gi|304428290|gb|EFM31380.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           ATCC 6249]
          Length = 830

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 89/233 (38%), Gaps = 15/233 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+     R +V D+E T   SK  +II++G V + +    ++ +   + P+         
Sbjct: 1   MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIVDQ-YATDVNPH-EPLDSHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+TD+ L   P FS +  + ++   +    ++AHN +FD   +   L     +   P
Sbjct: 58  ELTGLTDQRLAAAPEFSQVAGKIFELVKD--GVFVAHNVQFDANLLAEFLFFEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                            + +L  LC+  GI       H AL D+   +++ + M     Q
Sbjct: 116 RVDT-VELAQVLYPQFEKYNLGILCQELGIE--LEQAHTALSDAQATAELLLYM----RQ 168

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR--ITKEEL-DEHDKTIQT 230
             F           +    +   S L  ++    +  ++  EL + H   ++ 
Sbjct: 169 KLFELPKGLLESLLDLADNLLYESYLVIEEVYQQQFLLSSSELIELHGLFLRK 221


>gi|218148597|ref|YP_002364365.1| hypothetical protein PP141_gp57 [Pseudomonas phage 14-1]
 gi|218059793|emb|CAU13913.1| hypothetical protein [Pseudomonas phage 14-1]
 gi|294663797|gb|ADF29351.1| putative DNA polymerase III epsilon subunit [Pseudomonas phage
           JG024]
          Length = 184

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 7   MRKIVFDIETTGLDS-------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   V+D ETTGL         K  RIIE   V        +     F+C  G       
Sbjct: 1   MIFAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGEKILDEV--EFICNPGIVIEEII 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+ G+ +E L   PSF     +  DF   +    IAHN  FD   +  +L R      +
Sbjct: 59  TKITGLKNEDLIKHPSFLDQRQKVRDF-FARADANIAHNLPFDKFMLTCDLARGKLGLEE 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +     +       P   + +            +  KH AL D  LL +V  +M
Sbjct: 118 VNFPSLDICTVEESAPLFGHRMRLQHLYEHYCGPYVQKHRALDDVRLLHEVCKRM 172


>gi|53803894|ref|YP_114507.1| ribonuclease T [Methylococcus capsulatus str. Bath]
 gi|53757655|gb|AAU91946.1| ribonuclease T [Methylococcus capsulatus str. Bath]
          Length = 209

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 63/186 (33%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET+G D   + ++EI AV L           RT Q+ + P  G K    AL  + 
Sbjct: 18  VVVDVETSGFDPHANALLEIAAVHLDMDESGNLHPVRTHQLHVKPFEGAKLDEAALNFNK 77

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                        +         A  + HN  FD+ F+NA   R    
Sbjct: 78  INPFHPFRFAVDEREALSQIFDAVQQSIRQHGCTRAILVGHNPAFDIAFLNAASSRARIK 137

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L    +  G++  H+  H A  D++  + ++  ++ 
Sbjct: 138 KNPFHPFSTFDTATLGGLAYGQTVLARAAQAAGLSWDHQEAHSAAYDANQTARLFCTIVN 197

Query: 177 GGSQIN 182
              ++ 
Sbjct: 198 RWKRMT 203


>gi|301633239|gb|ADK86793.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           pneumoniae FH]
          Length = 1443

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 80/201 (39%), Gaps = 11/201 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL  + D +IE   +++    +  R  Q FL  +G        ++  IT  
Sbjct: 408 FVIFDIETTGLHGRYDSVIEFAGIKVKHNREVERM-QFFLKIDG-PLPAAVTEITKITQA 465

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D     +   +   + +      +AHN                      + +IDTL+
Sbjct: 466 QLEDGMEQQAGLEKLRAWLDG--CVMVAHNGLSFDLPFLQTQFEKYNIAPLTNPLIDTLA 523

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY------IKMMVGGSQI 181
           ++   +P  + + L+++C +          H A  D+  L  V+      +++M   +  
Sbjct: 524 LSWALNPGFASHTLSNICAKLKFDFDDERLHRADYDTQALKKVFDYFKEQVELMGITNLE 583

Query: 182 NFGFKTNEDRFFKEEKKTVPN 202
               + N+   F+  K+T  N
Sbjct: 584 QLDQELNQQCHFELLKRTFTN 604


>gi|300716497|ref|YP_003741300.1| ribonuclease T [Erwinia billingiae Eb661]
 gi|299062333|emb|CAX59450.1| Ribonuclease T [Erwinia billingiae Eb661]
          Length = 215

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D+K + ++EI AV L    +     + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFDAKTNALLEIAAVTLKMDENGWLEKDETLHFHVEPFEGSILQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +   +  +         A  +AHNA FD+ F NA   R    
Sbjct: 80  IDPSNPLRGAVSEYDALHAIFKLVRKGIKDHGCNRAIMVAHNATFDLNFTNAAADRAGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L   C   G+       H AL D+   +D++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLVLGQTVLAKACAAAGMAFDSSQAHSALYDTVQTADLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|148378258|ref|YP_001252799.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. ATCC 3502]
 gi|148287742|emb|CAL81808.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502]
          Length = 309

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 64/212 (30%), Gaps = 11/212 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +F   N   IAHNA FD+  + + L+  N        I   
Sbjct: 58  PHMVQDELEFDKIWGKIKGYF--NNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTM 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG------SQ 180
                         LN++    G    H       +    +     K +           
Sbjct: 116 KLSKNFYSNIDNARLNTVNNFLGYKFKHHDALADAMACSNILINISKELNSKDINEISKL 175

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
           I        +   K        +    R  P 
Sbjct: 176 IGVTLGYVNEDGCKPSSIKGRILKRSNRQAPR 207


>gi|189463384|ref|ZP_03012169.1| hypothetical protein BACCOP_04103 [Bacteroides coprocola DSM 17136]
 gi|189429813|gb|EDU98797.1| hypothetical protein BACCOP_04103 [Bacteroides coprocola DSM 17136]
          Length = 164

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 6/167 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   +  +G V + +   T +     + P     S    ++HG+T +
Sbjct: 4   FAAIDFET--ANKERSSVCSVGIVIVRNGEITEK-LYRLIRPYPNYYSYWNTQVHGLTFQ 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P+F  ++ E            +AHN+ FD G + A  Q  N +  D +      +
Sbjct: 61  DTACAPTFPEVWKEIDPIIAG--LPLVAHNSPFDEGCLKAAFQAYNMEYPDYTFHCTCRA 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R    S  N                  H AL D+   + + I ++
Sbjct: 119 SRRTFGKSLPNHQLQTVALK-CGYDLSHHHHALCDAEACAQIAINIL 164


>gi|158335553|ref|YP_001516725.1| exonuclease [Acaryochloris marina MBIC11017]
 gi|158305794|gb|ABW27411.1| exonuclease [Acaryochloris marina MBIC11017]
          Length = 168

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 10/166 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +  D ET   D + D    IG + + +    +R+    + P  +K   +   +HGIT 
Sbjct: 9   NFVAIDFET--ADYQRDSACAIGVIRVENDQIVDRS-HFLIRPPRQKF--QFTYIHGITW 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +K  P+F+ ++      F   +    AHNA FD   +NA  Q   +    P   + T+
Sbjct: 64  SDVKHHPTFAELWPNLQPKFAGSDFV-AAHNANFDRSVLNACCQ-AAELDPMPLPFLCTV 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +AR         L ++C+           H AL D+   + + I 
Sbjct: 122 KLAREVWNIRPTKLPNVCEFL---DIPLQHHQALSDAEACAKIVIA 164


>gi|222624763|gb|EEE58895.1| hypothetical protein OsJ_10524 [Oryza sativa Japonica Group]
          Length = 901

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTG   + +RIIE    +L+     N T Q  + P     +     +        
Sbjct: 703 VFDIETTGFSRRYERIIEFAVRDLMGGK--NSTIQTLINPEREIKNAYVHGISSSMVCKP 760

Query: 71  KDKPS 75
                
Sbjct: 761 DIPRF 765


>gi|254458194|ref|ZP_05071620.1| exonuclease [Campylobacterales bacterium GD 1]
 gi|207085030|gb|EDZ62316.1| exonuclease [Campylobacterales bacterium GD 1]
          Length = 272

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 68/197 (34%), Gaps = 7/197 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIET G      +IIEIGAV++ D    ++ F+  +    R+ +    ++ GI+ E  
Sbjct: 71  IVDIETNGSKIDKHQIIEIGAVKVRDGVIIDK-FESLV--YCREINKHITEITGISVEDT 127

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K+ P+   +  EF  F              +    ++ +   +          +      
Sbjct: 128 KNAPNLKKVLYEFKSFLGNAIFVAHDVKFDYKFISLSMQKIGLEPLLNRSICSLALAERT 187

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
              +  + + LN           + + H A+ D      +++  +     ++   KT ED
Sbjct: 188 IESYRYALSYLNDSLH----LNPNATHHRAMSDVITTYGLFMLSLHNLKSLDKDVKTAED 243

Query: 191 RFFKEEKKTVPNISLLK 207
                ++          
Sbjct: 244 LIKFSKEAKRFKRPKFD 260


>gi|26991449|ref|NP_746874.1| DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440]
 gi|24986524|gb|AAN70338.1|AE016675_8 exonuclease [Pseudomonas putida KT2440]
          Length = 203

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 64/174 (36%), Gaps = 7/174 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  E+  V L       R +Q  +   G         L GIT
Sbjct: 3   RIAVIDFETTGISPGTGCRATEVAVVMLEGGRIVER-YQSLMN-AGVPVPAFVAGLTGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+  P    + +E  +F        +AHNA FD  F +   +              +
Sbjct: 61  TAMLRSAPPVEKVMNEVAEFVGG--TPLLAHNAAFDQKFWD--YELGRIGRSRSQPFACS 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           L ++RR  P++ N       R+       + H A+ D+ + +++   +     Q
Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMADAEMAANLLQYLAGVLRQ 170


>gi|197261383|ref|YP_002154199.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage
           LBL3]
 gi|197244473|emb|CAR31208.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage
           LBL3]
          Length = 184

 Score = 52.2 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 63/175 (36%), Gaps = 10/175 (5%)

Query: 7   MRKIVFDIETTGLDS-------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   V+D ETTGL         K  RIIE   V        +     F+C  G       
Sbjct: 1   MIFAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGEKILDEV--EFICNPGIVIEEII 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+ G+ +E L   PSF     +  DF   +    IAHN  FD   +  +L R      +
Sbjct: 59  TKITGLKNEDLIKHPSFLDQRQKVRDF-FARADANIAHNLPFDKFMLTCDLARGKLGLEE 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +     +       P   + +            +  KH AL D  LL++V  +M
Sbjct: 118 VNFPSLDICTVEESAPLFGHRMRLQHLYEHYCGPYVQKHRALDDVRLLNEVCKRM 172


>gi|153933783|ref|YP_001382659.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935123|ref|YP_001386211.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str.
           Hall]
 gi|152929827|gb|ABS35327.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. ATCC 19397]
 gi|152931037|gb|ABS36536.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. Hall]
          Length = 309

 Score = 52.2 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 64/212 (30%), Gaps = 11/212 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +F   N   IAHNA FD+  + + L+  N        I   
Sbjct: 58  PHMVQDELEFDKIWGKIKGYF--NNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTM 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG------SQ 180
                         LN++    G    +       +    +     K +           
Sbjct: 116 KLSKNFYSNIDNARLNTVNNFLGYKFKYHDALADAMACSNILINISKELNSKDINEISKL 175

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
           I        +   K        +    R  P 
Sbjct: 176 IGVTLGYVNEDGCKPSSIKGRILKRSNRQAPR 207


>gi|67459827|ref|YP_247450.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2]
 gi|67005360|gb|AAY62285.1| DNA polymerase III, epsilon subunit-like protein [Rickettsia felis
           URRWXCal2]
          Length = 377

 Score = 52.2 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 66/229 (28%), Gaps = 11/229 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK--TNRTFQVFLCPNGRKNSPEALKLHG 64
           I  D ETTGL  + D+I+E+G V+     D            +  P  +       +L G
Sbjct: 126 IFLDTETTGLSHEKDKILELGMVKFEYTEDGRIYQIVDELNQYQDPQ-QPIPLRITELTG 184

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITDE ++ K       ++F +  +   A   + +  F          +            
Sbjct: 185 ITDEMVQGKAIDQEAVTQFLENVDIIIAHNASFDRPFFDKMFLHLPPKAWGCSRADIDWK 244

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK-MMVGGSQINF 183
                + +    +            +T      H       +     +K ++V  ++  F
Sbjct: 245 AEKIESHKLEYLAYKYNFFYEGHRAVTDCLAGLHLLAQTLPIAKQPVLKQLLVNCNKTRF 304

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRD----KPLFTRITKEELDEHDKTI 228
                   +  ++                 K     + ++ L+     +
Sbjct: 305 KIWAKNAPYDTKDLLKARGYRWSTHPQDNYKAWIIEVFEDNLEIELAFL 353


>gi|86133336|ref|ZP_01051918.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
 gi|85820199|gb|EAQ41346.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
          Length = 359

 Score = 52.2 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 72/196 (36%), Gaps = 9/196 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +  D  +    F   + P  +      ++L GI ++
Sbjct: 2   YAILDIETTGGKFNEEGITEIAIYKY-DGQEIVDQFISLINPE-KPIQEFVVRLTGINNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTL 127
            LK+ P F  +     +    +N   +AHN+ FD   +  E  R+  D    +   ++  
Sbjct: 60  MLKNAPKFYEVAKRIVE--ITKNCIIVAHNSAFDYRILRTEFDRLGFDFERNTLCTVELS 117

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                  PS      +      + I    +H A  D+     ++  ++    +       
Sbjct: 118 QALILDQPSYSLGKLTKS----LGIPISDRHRATGDALATVKLFKLLLEKDHKKTIIQNA 173

Query: 188 NEDRFFKEEKKTVPNI 203
            +    + EK+ + N+
Sbjct: 174 IKYFDKRLEKQKLKNL 189


>gi|323340217|ref|ZP_08080481.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           ruminis ATCC 25644]
 gi|323092408|gb|EFZ35016.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           ruminis ATCC 25644]
          Length = 180

 Score = 52.2 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 68/177 (38%), Gaps = 8/177 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  + FD ET   ++K +    +    + +    +      + P         + +HGI 
Sbjct: 1   MNFVAFDFET--ANAKRNSACSLALTVVQNNQIVDE-LYSLINPKTN-FDYRNIAIHGIK 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P F S      + F    +  +AHNA FD   +   L++          +IDT
Sbjct: 57  PQMVADSPDF-SELWPHIESFFTPESLVVAHNAPFDCSVLTRTLEKYGIAAP-HFNVIDT 114

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +  +++ +    N L++LC+   + I     H AL DS   + + +  +        
Sbjct: 115 VKTSKQFYDFQDNKLDTLCQ--NLDIDLAHHHNALDDSQACAKILLSQLQNFGSDTL 169


>gi|315224650|ref|ZP_07866473.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga
           ochracea F0287]
 gi|314945278|gb|EFS97304.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga
           ochracea F0287]
          Length = 1485

 Score = 52.2 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 67/200 (33%), Gaps = 19/200 (9%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R ++I      ++          + P+G     +
Sbjct: 2   YLIFDTETTGLPRRWDAPLSDSDNWPRAVQIAWQLHDEWGALIEHQDFLIKPDGFDVPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----- 113
           A K+HGI+ +  + +    +   + ++    +    +  N  FD+  + AE  R      
Sbjct: 62  AEKVHGISTQLAEAQGMPIAEVFKAFNEALSKAQYVVGQNIGFDINIMGAEFYRYGVESP 121

Query: 114 --NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSD 169
                 +D                  R  L +L + +           H A  D    + 
Sbjct: 122 LTQMPVIDTCTEATANLCQIAGGKGGRYKLPTLTELHSFLFGIPFAEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNE 189
            + +++  G     G  +++
Sbjct: 182 CFFELIRRGEGFQEGTFSSD 201


>gi|251780665|ref|ZP_04823585.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243084980|gb|EES50870.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 243

 Score = 52.2 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 74/229 (32%), Gaps = 16/229 (6%)

Query: 7   MRKIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KN 55
           M  IV+D+E    + +             +I+IGAV+L    +   TF   + P    + 
Sbjct: 1   MNYIVYDLE---FNHQYSKDDKASNITFEVIQIGAVKLNSNLEVVSTFNRLIKPTVHTEI 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
            P    L  IT E +  +  FS ++ +F +F   +               +         
Sbjct: 58  HPFIKDLTQITTEMVNSEKYFSDVYDDFIEFIGNKEFTVCIWGTSDIKELLKNVKFHNLE 117

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             D L     +  L+    K              +      +  H A  D+H  + ++ K
Sbjct: 118 EIDDLRKYIDVQNLASKYIKTQKGTKVGLKTAIEFFNLPIEKEFHDAFNDAHYTAQIFKK 177

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
           +     + +        R  + + K        + +K    ++++EE  
Sbjct: 178 LYTSKVKSSTYNNPYSKRISEPKSKVDTKGLFRQFEKMYSKKLSEEEKK 226


>gi|283798273|ref|ZP_06347426.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
 gi|291074053|gb|EFE11417.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
          Length = 244

 Score = 52.2 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 8/173 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLC-PNGRKNSPEALKLHG 64
           + FD ETTGL++++ +IIE+ A+ +        +   +  VF+  P G +   + ++L G
Sbjct: 15  VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQKIVELTG 74

Query: 65  ITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           ITDE    +  + +   + F +         +AHNA+FD+ F    L+R      +  + 
Sbjct: 75  ITDEQLENEGITETEAAARFTELIGGGRVLLVAHNAQFDLLFTAEMLRRHGNGGPEVLKA 134

Query: 124 IDTLS--IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D L      +   +  + L +    Y +    ++ H A+ D   L +V   M
Sbjct: 135 ADYLDSLTVYKDRRAYPHKLANAILTYKLEDKVQNSHRAIDDVAALFEVCKAM 187


>gi|148380237|ref|YP_001254778.1| exonuclease family protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931193|ref|YP_001384542.1| exonuclease family protein [Clostridium botulinum A str. ATCC
           19397]
 gi|153935233|ref|YP_001388058.1| exonuclease family protein [Clostridium botulinum A str. Hall]
 gi|148289721|emb|CAL83826.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502]
 gi|152927237|gb|ABS32737.1| exonuclease family protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152931147|gb|ABS36646.1| exonuclease family protein [Clostridium botulinum A str. Hall]
          Length = 253

 Score = 52.2 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 70/207 (33%), Gaps = 15/207 (7%)

Query: 7   MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNS 56
           M  I+FD+E    +   +          II+IGA++L +   T  TF   + P      +
Sbjct: 1   MSYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSDLN 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAELQRIN 114
           P    L  +T + L    SF  ++ +F +F N+    +         ++       Q   
Sbjct: 58  PFVKNLTNLTMDSLNKAKSFREVYKDFLEFLNKDRNIFCIWGMTDMKELFRNIVYYQLDT 117

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +        +   +     +P S N   S          +   H A  D+   ++V+ K+
Sbjct: 118 ESMPKEYINVQAYTGKYLNYPKSINVGLSNAVELFHITKNNDFHNAFNDAFYTAEVFKKI 177

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP 201
                +      TN    ++ +     
Sbjct: 178 YSEKIKTKIYKPTNNSTTYRTKNTKTK 204


>gi|313108556|ref|ZP_07794557.1| putative nuclease [Pseudomonas aeruginosa 39016]
 gi|310881059|gb|EFQ39653.1| putative nuclease [Pseudomonas aeruginosa 39016]
          Length = 208

 Score = 52.2 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 60/168 (35%), Gaps = 3/168 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I  D+ETT LD +   I+ IGAV +           ++++ P       E++++H +   
Sbjct: 33  ISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPP-SLDAESIRIHKLRRA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIIDTL 127
            L+ +        +   F  ++       +     +     +L                 
Sbjct: 92  DLEGQLQLEQALRQLLAFIGDRPLLGYYLSFDVAVLNRHLRQLFDRQLHNPSIEISSLYH 151

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               R  P +  DL        + +    +H AL D+  ++ ++++++
Sbjct: 152 RKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLL 199


>gi|182417499|ref|ZP_02948826.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           5521]
 gi|237666097|ref|ZP_04526085.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182378668|gb|EDT76195.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           5521]
 gi|237659044|gb|EEP56596.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 270

 Score = 52.2 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 66/200 (33%), Gaps = 3/200 (1%)

Query: 25  RIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            II+IGAV+L D  +   TF   + P+  ++  P   +L GI  E +  +  F S++ EF
Sbjct: 54  EIIQIGAVKLNDNFEIIATFNRLIKPSLYKEIHPFIEELTGINTEMVATEKHFPSVYKEF 113

Query: 84  WDFFNEQNAEWIAHNAKFDVG--FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDL 141
             F    +                          + +     I  L+      P      
Sbjct: 114 LKFIGSNDFVMCVWGIDDIKQLIRNIHYHSLNIHNNIKKYIDIQNLASKEFNTPKGNRLG 173

Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP 201
                 +         H AL D+     V+ K+     + +     N +R      K   
Sbjct: 174 LKTAVEFWNIPIQNDFHNALNDAVYTCHVFKKVFNKNLKPSIYSNPNYNRIPTNSLKVDT 233

Query: 202 NISLLKRDKPLFTRITKEEL 221
              + + +K    ++TKEE 
Sbjct: 234 EKLISQFEKMFGRKMTKEEK 253


>gi|90408436|ref|ZP_01216597.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3]
 gi|90310470|gb|EAS38594.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3]
          Length = 237

 Score = 52.2 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITD 67
            +V D ETTGL +K + II IG VE+ +      +   +++  + + N   A+  H +  
Sbjct: 50  FLVVDFETTGLIAKYNDIISIGWVEISNLQVVCASQEHIYINNDKKINHETAVINHIVPQ 109

Query: 68  E 68
            
Sbjct: 110 M 110


>gi|90407122|ref|ZP_01215310.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3]
 gi|90311698|gb|EAS39795.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3]
          Length = 238

 Score = 52.2 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR 53
           +  D ETTGLDSK + II IG V          +  + ++ P   
Sbjct: 48 FVALDFETTGLDSKQNSIISIGLVPFDLQRIYCRKAKKWYINPEDN 93


>gi|229004425|ref|ZP_04162172.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
          Rock1-4]
 gi|228756825|gb|EEM06123.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
          Rock1-4]
          Length = 44

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 8  RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSK 39
          R +V D+ETTG   K   DRI +I AV + D   
Sbjct: 4  RYVVVDLETTGNSWKDGKDRITQIAAVVVEDGEI 37


>gi|118577408|ref|YP_899648.1| exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus
           DSM 2379]
 gi|118504913|gb|ABL01395.1| Exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus
           DSM 2379]
          Length = 304

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 73/234 (31%), Gaps = 17/234 (7%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNR------TFQVFLCPNGRKNSPEALKLHGI 65
            D ETTG +  +D IIE+G V     + T        T+  F  P  R   PE   + GI
Sbjct: 50  IDTETTGFNFSDDVIIELGIVAFEYDAMTGEISRIVDTYSGFEDP-CRPLDPEVTAVTGI 108

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ----RINKDPLDPS 121
           TD+ L  +    +   +     +         +  F         +             +
Sbjct: 109 TDDMLAGQSLDDAAVGKIVSQASLCFCHNCKFDRSFLERRFPEFEKLPFACTMSQIDWKN 168

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++ + ++    +      +++                 L  S L   V+  ++    + 
Sbjct: 169 ELVTSRTLEYLLYKCGACFIDAHRALNDAEGLLGLLLENLPVSKLS--VFKTVLENARKP 226

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231
           +F        +  ++               + K  +T +++++LD     +  +
Sbjct: 227 SFKIMAYNSAYSAKDSLRDRKYHWEPGGDGKIKTWWTVVSEKDLDNEITFLNNI 280


>gi|13507773|ref|NP_109722.1| DNA polymerase III PolC [Mycoplasma pneumoniae M129]
 gi|2494192|sp|P75080|DPO3_MYCPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1673778|gb|AAB95768.1| DNA polymerase III (dnaE) alpha chain [Mycoplasma pneumoniae M129]
          Length = 1443

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 80/201 (39%), Gaps = 11/201 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL  + D +IE   +++    +  R  Q FL  +G        ++  IT  
Sbjct: 408 FVIFDIETTGLHGRYDSVIEFAGIKVKHNREVERM-QFFLKIDG-PLPAAVTEITKITQA 465

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D     +   +   + +      +AHN                      + +IDTL+
Sbjct: 466 QLEDGMEQQAGLEKLRAWLDG--CVMVAHNGLSFDLPFLQTQFEKYNIAPLTNPLIDTLA 523

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY------IKMMVGGSQI 181
           ++   +P  + + L+++C +          H A  D+  L  V+      +++M   +  
Sbjct: 524 LSWALNPGFASHTLSNICAKLKFDFDDERLHRADYDTQALKKVFDYFKEQVELMGITNLE 583

Query: 182 NFGFKTNEDRFFKEEKKTVPN 202
               + N+   F+  K+T  N
Sbjct: 584 QLDQELNQQCHFELLKRTFTN 604


>gi|90579159|ref|ZP_01234969.1| ribonuclease T [Vibrio angustum S14]
 gi|90439992|gb|EAS65173.1| ribonuclease T [Vibrio angustum S14]
          Length = 221

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 71/202 (35%), Gaps = 14/202 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L      + K   T    + P  G     EAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVSPFEGAILHKEALDFNG 79

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                     +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 80  IRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHSFVMAASERAKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                       + A       +  L   C+   I   +R  H AL D+   ++++ +++
Sbjct: 140 KRNPFHPFATFDTAALSGLAFGQTVLAKACQTANIPFDNREAHSALYDTERTAELFCEIV 199

Query: 176 VGGSQINFGFKTNEDRFFKEEK 197
               ++             +  
Sbjct: 200 NKWKKLGGWPLMAPQTDESDNN 221


>gi|213963506|ref|ZP_03391759.1| putative DNA polymerase III, alpha subunit subfamily
           [Capnocytophaga sputigena Capno]
 gi|213953786|gb|EEB65115.1| putative DNA polymerase III, alpha subunit subfamily
           [Capnocytophaga sputigena Capno]
          Length = 1485

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 67/200 (33%), Gaps = 19/200 (9%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R ++I      ++          + P+G     +
Sbjct: 2   YLIFDTETTGLPRRWDAPLTDSDNWPRAVQIAWQLHDEWGALIEHQDFLIKPDGFDVPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----- 113
           A K+HGI+ +  + +    +   + ++    +    +  N  FD+  + AE  R      
Sbjct: 62  AEKVHGISTQLAETQGVPIAEVFKAFNEALSKAKYVVGQNIGFDINIMGAEFHRYGVESP 121

Query: 114 --NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSD 169
                 +D                  R  L +L + +           H A  D    + 
Sbjct: 122 LTQMPVIDTCTETTANLCQIAGGKGGRYKLPTLTELHSFLFGVPFAEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNE 189
            + +++  G     G  +++
Sbjct: 182 CFFELIRRGEGFQEGTFSSD 201


>gi|239927654|ref|ZP_04684607.1| exonuclease RNase T and DNA polymerase III [Streptomyces ghanaensis
           ATCC 14672]
 gi|291435992|ref|ZP_06575382.1| exonuclease RNase T and DNA polymerase III [Streptomyces ghanaensis
           ATCC 14672]
 gi|291338887|gb|EFE65843.1| exonuclease RNase T and DNA polymerase III [Streptomyces ghanaensis
           ATCC 14672]
          Length = 204

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 2/115 (1%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D ETTGLD       EI  + L    +T++    +L P+     P+AL+++   +   
Sbjct: 15  FVDTETTGLDPFQHDAWEIAVI-LRKPGETDQESVFYLEPDLINADPKALEINRYHERVK 73

Query: 71  KDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            +  ++        D +        I  N  FD   I     R    P       
Sbjct: 74  TEDWTWGKPQDVARDLYRLLDGTVLIGSNPPFDADMIANIFGRYYWHPKPWHYRT 128


>gi|153940748|ref|YP_001391589.1| exonuclease family protein [Clostridium botulinum F str. Langeland]
 gi|152936644|gb|ABS42142.1| exonuclease family protein [Clostridium botulinum F str. Langeland]
 gi|295319617|gb|ADF99994.1| exonuclease family protein [Clostridium botulinum F str. 230613]
          Length = 253

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 70/207 (33%), Gaps = 15/207 (7%)

Query: 7   MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNS 56
           M  I+FD+E    +   +          II+IGA++L +   T  TF   + P      +
Sbjct: 1   MNYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSDLN 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAELQRIN 114
           P    L  +T + L    SF  ++ +F  F N+    +         ++       Q   
Sbjct: 58  PFVKNLTNLTMDSLNKAKSFREVYKDFLKFLNKDRNIFCIWGMTDMKELFRNIVYYQLDT 117

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +        +   +     +P S N   S   +      +   H A  D+   ++V+ K+
Sbjct: 118 ESMPKEYINVQAYTGKYLNYPKSINVGLSNAVQLFHITKNNDFHNAFNDAFYTAEVFKKI 177

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP 201
                +      TN    ++ +     
Sbjct: 178 YSEKMRTKIYKPTNNSTTYRTKNTKTK 204


>gi|497127|gb|AAA21572.1| RNase T [Vibrio parahaemolyticus]
          Length = 214

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 14/195 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L    +       T    + P  G     EAL+ +G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLRMDEEGVLHPASTIHFHIEPFEGANLEKEALEFNG 79

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F   +              +  +     +   A  +AHNA FD+ F+NA  +R   
Sbjct: 80  IRDPFSPLRGAISEQEALKEIYKLIRKEQKASDCSRAIMVAHNAAFDLSFVNAANERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCGIV 199

Query: 176 VGGSQINFGFKTNED 190
                +      +E+
Sbjct: 200 NKWKALGGWPLVDEE 214


>gi|332090790|gb|EGI95882.1| ribonuclease T [Shigella boydii 5216-82]
          Length = 215

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L+  C+  G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTTALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|315180012|gb|ADT86926.1| DNA polymerase III subunit epsilon [Vibrio furnissii NCTC 11218]
          Length = 238

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL    D II IG V   L+    NR     + P  +K    ++ +HGIT 
Sbjct: 48  FVAMDFETTGLSVDKDEIITIGLVPFTLERIYLNRAKHWTVRP-RQKLDEHSIVIHGITH 106

Query: 68  EFLKDKPSFSSIFSEFWDFF 87
             + D P  S IF E  +  
Sbjct: 107 NDIMDAPDLSDIFEEVLEHL 126


>gi|110833585|ref|YP_692444.1| ribonuclease T [Alcanivorax borkumensis SK2]
 gi|110646696|emb|CAL16172.1| Ribonuclease T [Alcanivorax borkumensis SK2]
          Length = 228

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 15/187 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCP------NGRKNSPE 58
           +V D+ET G +S+ D ++EI AV +      +   + R  Q  + P              
Sbjct: 24  VVIDVETGGFNSQTDALLEIAAVLIEMDAQGNLRPSTRI-QFHVDPFPGANLEQAALDFT 82

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINK 115
            +  +      + ++ +   +F        +        + HN+ FD GF+NA   R + 
Sbjct: 83  GIDPNNPLRGAVPEETALKGVFDPVRKAIKQHACSRAVLVGHNSFFDQGFLNAATDRTDI 142

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                       +         +  L   C+  GI  S R  H AL D+   ++++  M+
Sbjct: 143 KRNPFHPFSSFDTATLAGLVYGQTVLAKACEAAGIRFSQREAHSALYDATRTAELFCSMV 202

Query: 176 VGGSQIN 182
                + 
Sbjct: 203 NRFKTLG 209


>gi|90410853|ref|ZP_01218868.1| ribonuclease T [Photobacterium profundum 3TCK]
 gi|90328484|gb|EAS44782.1| ribonuclease T [Photobacterium profundum 3TCK]
          Length = 223

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +SK D ++EI AV L      + K   T    + P  G     EAL+ +G
Sbjct: 20  VVIDVETAGFNSKTDALLEICAVTLQMDEDGWLKPASTIHFHVAPFEGAVLHKEALEFNG 79

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F   +                 +     +   A  +AHNA FD  F+    +R   
Sbjct: 80  IRDPFSPLRGAVSEETALKEIYKQIRKEQKAADCSRAIMVAHNANFDHSFVMEASERARL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                       + A       +  L   CK  G+   ++  H AL D+   ++++ +++
Sbjct: 140 KRNPFHPFATFDTAALSGLAFGQTVLAKACKTAGVAFDNKEAHSALYDTERTAELFCEIV 199

Query: 176 VGGSQIN 182
               ++ 
Sbjct: 200 NKWKKLG 206


>gi|163849777|ref|YP_001637820.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           extorquens PA1]
 gi|163661382|gb|ABY28749.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           extorquens PA1]
          Length = 297

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 72/211 (34%), Gaps = 8/211 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ET   + + D    +G   +       R     + P   + SP  +++HGI 
Sbjct: 1   MKVVAIDFET--ANERRDSACAVGLAWIEGGRVVRRE-SRLIRPPQLRFSPGNIRVHGIL 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P+F  + +EF    +      +AHNA FD+G + A L    +   D +     
Sbjct: 58  PADVRDAPTFPEVIAEFLPDLSG--GLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
               R     + + L    K  G        H A  D+   +++ +  +      +    
Sbjct: 116 QIARRVFPDPAGHGL---AKVAGRLGIRFEHHDAGEDAFACAEIALAALHETGAADIADL 172

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
                       T P   + +       R +
Sbjct: 173 ARGLGLTPIRALTTPRRDMTRSTSAKALRAS 203


>gi|295108760|emb|CBL22713.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Ruminococcus obeum A2-162]
          Length = 319

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 66/210 (31%), Gaps = 12/210 (5%)

Query: 7   MRKIVFDIE---TTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  IVFD+E   + G    ++      IIEIGAV++ +  +    FQ  + P       +
Sbjct: 1   MNYIVFDLEWNQSPGGKKYSNSRLPFEIIEIGAVKMNEQREVLDVFQRLVKPQVYNWIHD 60

Query: 59  ALKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD 116
           ++     +  + L D   F     EF D+  E+       N    ++         + K 
Sbjct: 61  SIHEVIHVDYKDLADGVPFPQAVEEFLDWCGEERVFCTWGNQDVMELQRNMKYYGLLKKI 120

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKM 174
               +                                 +  H AL D+    +++  + M
Sbjct: 121 KGPVTYYDAQKIYGICYKEDPCRRSLEYAIDKMRLPKAQEFHRALTDAKYTGEIFKRLDM 180

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204
            V  +  +     N     +E   + PN  
Sbjct: 181 QVVLANPSIDVYQNPKTRKEEIYLSYPNYD 210


>gi|308049989|ref|YP_003913555.1| RNAse T [Ferrimonas balearica DSM 9799]
 gi|307632179|gb|ADN76481.1| RNAse T [Ferrimonas balearica DSM 9799]
          Length = 222

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 78/199 (39%), Gaps = 14/199 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L      + + ++T    + P  G    P AL+ +G
Sbjct: 20  VVIDVETAGFNAQTDALLEIAAVTLKMDEQGWLQPDQTIHFHVAPFEGANLEPAALEFNG 79

Query: 65  ITDEFLKDKP---------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           ITD F   +              +  +         +  +AHNA FD  F+NA  +R   
Sbjct: 80  ITDPFSALRGAVSEREALSEIFKLVRKGQKAAGCNRSIIVAHNATFDQSFVNAASERTKM 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         + A       +  L   C+  GI   ++  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFGTFDTAALSGLALGQTVLAKACRAAGIPFDNKEAHSALYDTQRTAELFCYIV 199

Query: 176 VGGSQINFGFKTNEDRFFK 194
                +        +   K
Sbjct: 200 NRWKALGGWPMVPGEEAGK 218


>gi|38232702|ref|NP_938469.1| hypothetical protein DIP0068 [Corynebacterium diphtheriae NCTC
          13129]
 gi|38198960|emb|CAE48575.1| Hypothetical protein DIP0068 [Corynebacterium diphtheriae]
          Length = 102

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
            V D  TTG + + D IIE+ AV    Y K   ++   L P+
Sbjct: 31 FAVIDTGTTGFNKRYDHIIELAAVRADAYFKPVDSWHALLNPD 73


>gi|332829852|gb|EGK02494.1| hypothetical protein HMPREF9455_01451 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 164

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 7/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   +  +G V + +    +R F   + P           +HG+T E
Sbjct: 5   FAAIDFET--ANEQMSSVCSVGIVIVRNGIICDR-FYSLIQPEPNYYIYGNSNVHGLTYE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              +   FS ++        E     +AHN  FD   + A  +    D  D        +
Sbjct: 62  DTINADVFSKVWMLIEPLIGE--LPLVAHNKGFDETCLKAVFKTYRMDYPDYRFYCTLAA 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R+    S + L+++ +  G      + H AL D+   +++ ++++
Sbjct: 120 SRRQLRHLSNHQLHTVAEDCG--YILTNHHNALADAEACAEIALQLL 164


>gi|296119586|ref|ZP_06838144.1| exonuclease [Corynebacterium ammoniagenes DSM 20306]
 gi|295967469|gb|EFG80736.1| exonuclease [Corynebacterium ammoniagenes DSM 20306]
          Length = 212

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 56/187 (29%), Gaps = 12/187 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYS--KTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            +  D+ETTGL  K  +I+ IG V + +     +   + V +   G      A   H   
Sbjct: 29  FLAVDMETTGLKPKQHQIVSIGWVPIKNNRVQLSGAQY-VLIK--GVDVGESATIHHLRD 85

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +  K       I     D    +    +AH A  +  F +   +++         +   
Sbjct: 86  SDLEKGMELEEGIDKLTAD---LRGKAMLAHFAPIETSFYSHACKKLWGKEPHLEVVDTF 142

Query: 127 LSIARRKHPSSRNDLNS----LCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
               R     S             R    + +   H AL D+   +++Y+ M        
Sbjct: 143 ALERRHMERMSTYPRGEDLRLSRVRARYGLPNYPSHNALTDAIACAELYLAMAAHRPPTK 202

Query: 183 FGFKTNE 189
                  
Sbjct: 203 LKDMQKN 209


>gi|292488168|ref|YP_003531050.1| ribonuclease T [Erwinia amylovora CFBP1430]
 gi|291553597|emb|CBA20642.1| ribonuclease T [Erwinia amylovora CFBP1430]
          Length = 226

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNG---------RKNS 56
           +V D+ET G D+K + ++EI AV L      + + + T    + P             N 
Sbjct: 22  VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDETLHFNVEPFPGSVLLAEALAFNG 81

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            +            +   +   +  +         A  +AHNA FD+ F+NA  +R +  
Sbjct: 82  IDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 141

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L   C   G++      H AL D+   +D++ +++ 
Sbjct: 142 RNPFHPFVTFDTAALSGLVLGQTVLAKACNAAGMSFDSAQAHSALYDTLQTADLFCELVN 201

Query: 177 GGSQIN 182
              ++ 
Sbjct: 202 RWKRLG 207


>gi|292899378|ref|YP_003538747.1| ribonuclease T [Erwinia amylovora ATCC 49946]
 gi|291199226|emb|CBJ46341.1| ribonuclease T [Erwinia amylovora ATCC 49946]
          Length = 224

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNG---------RKNS 56
           +V D+ET G D+K + ++EI AV L      + + + T    + P             N 
Sbjct: 20  VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDETLHFNVEPFPGSVLLAEALAFNG 79

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            +            +   +   +  +         A  +AHNA FD+ F+NA  +R +  
Sbjct: 80  IDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L   C   G++      H AL D+   +D++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLVLGQTVLAKACNAAGMSFDSAQAHSALYDTLQTADLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|34498206|ref|NP_902421.1| exonuclease [Chromobacterium violaceum ATCC 12472]
 gi|34104060|gb|AAQ60420.1| probable exonuclease [Chromobacterium violaceum ATCC 12472]
          Length = 207

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 7   MRK--IVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           MR+   V D ET G     D R  EIG   + D    +R F   +   G    P   +L 
Sbjct: 1   MRQRVAVIDFETNGATPGGDCRATEIGVAMVEDGRVVDR-FHSLMN-AGVWVPPMIERLT 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           GI++  LKD P    +  +   F  +  A   AHNA FD  F + 
Sbjct: 59  GISNAMLKDAPPAERVMRDAAHFVGD--APLAAHNAGFDRKFWDY 101


>gi|310767562|gb|ADP12512.1| ribonuclease T [Erwinia sp. Ejp617]
          Length = 219

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 65/186 (34%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNR--TFQVFLCP--NGRKNSPEALKLH 63
           +V D+ET G D+K + ++EI AV  ++       +  T    + P               
Sbjct: 20  VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLGKDDTLHFHVEPFAGSVLLPEALTFNG 79

Query: 64  GITDEF-------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
                         +   +   +  +         A  +AHNA FD+ F+NA  +R +  
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L   C   G+       H AL D+   +D++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLAKACHAAGMAFDSAQAHSALYDTLQTADLFCELVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|156974738|ref|YP_001445645.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116]
 gi|156526332|gb|ABU71418.1| hypothetical protein VIBHAR_02456 [Vibrio harveyi ATCC BAA-1116]
          Length = 249

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +  D ETTGL+++ D I+ IG V   L   + + +    + PN   N    +   
Sbjct: 59  FVSVDFETTGLNAEQDAILTIGLVPFTLGRVQCSGSRHWVVNPNRELNEESVVIHG 114


>gi|94501813|ref|ZP_01308325.1| DNA polymerase III subunit epsilon [Oceanobacter sp. RED65]
 gi|94426034|gb|EAT11030.1| DNA polymerase III subunit epsilon [Oceanobacter sp. RED65]
          Length = 238

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             D ETTGL+  +D II IG V         N      + PN    S E++ +H I    
Sbjct: 48  ALDFETTGLNPNDDSIISIGMVPFSLQRIYCNNAVYWVVRPNT-PLSEESILIHHIKHSE 106

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEW 94
           ++  P    +     +  +E     
Sbjct: 107 IQSAPRIERLLEPLLEKLSEHILVV 131


>gi|259502638|ref|ZP_05745540.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259169453|gb|EEW53948.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 224

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           +  D+ET+GL+    +II IGAV+ +    T  TF   + 
Sbjct: 55 FVSLDLETSGLNPTTAQIISIGAVKRIAGHTT--TFYRLVK 93


>gi|37679366|ref|NP_933975.1| ribonuclease T [Vibrio vulnificus YJ016]
 gi|54036328|sp|Q7MM91|RNT_VIBVY RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|37198109|dbj|BAC93946.1| ribonuclease T [Vibrio vulnificus YJ016]
          Length = 217

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 73/197 (37%), Gaps = 14/197 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L            T    + P  G     EAL+ +G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKEALEFNG 79

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F   +              +        +   A  +AHNA FD+ F+NA  +R   
Sbjct: 80  IRDPFSPLRGAVTEQEALKEIYKLIRREQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKTAGMEFDNREAHSALYDTEKTAELFCGIV 199

Query: 176 VGGSQINFGFKTNEDRF 192
                +       ++  
Sbjct: 200 NKWKALGGWPLIEDENE 216


>gi|323163498|gb|EFZ49324.1| ribonuclease T [Escherichia coli E128010]
          Length = 215

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F+ A  +R++  
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERVSLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L+  C+  G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|322805638|emb|CBZ03203.1| ATP-dependent DNA helicase UvrD/PcrA,clostridial paralog
           [Clostridium botulinum H04402 065]
          Length = 549

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 25/40 (62%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF 47
             +VFD+E+TG++   D I++I  +++ +  +   +FQ F
Sbjct: 494 NVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRF 533


>gi|327313911|ref|YP_004329348.1| exonuclease [Prevotella denticola F0289]
 gi|326945021|gb|AEA20906.1| exonuclease [Prevotella denticola F0289]
          Length = 163

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 7/168 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
                D ET   + +   +  +G V +    +   TF   + P          ++HG+T 
Sbjct: 3   NFAAIDFET--ANFERSSVCSVGVVIVRGG-EVADTFYSLVHPEPNYYQWRCTQVHGLTR 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E   D P FS +++             +AHNA FD G + A  Q    D  D   +    
Sbjct: 60  EDTDDAPVFSKVWARIEPLIEG--LPLVAHNAPFDKGCLRACFQTYRMDYPDYEFLDTLR 117

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +  R     S + L+++    G        H AL D+   + +  +++
Sbjct: 118 AARRVFPRLSNHQLHTVSAACG--YDLSRHHHALADAEACAWIAREIL 163


>gi|242371797|ref|ZP_04817371.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           M23864:W1]
 gi|242350498|gb|EES42099.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           M23864:W1]
          Length = 213

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V+++D   T  +F   + P     +   + +HGI  E
Sbjct: 35  FVALDFET--ANGKRTSICSVGMVKVIDNQIT-ESFYTLVNPFD-YFTETNINVHGIKPE 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PSF  ++     F        +AHNA FD+  ++  L+++N +    +       
Sbjct: 91  DVEGAPSFEYVYPYMLQFI--DQLPVVAHNAAFDMNVLHQSLKQLNIETPSMTYFCSYQL 148

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
             R                    +     H AL D+   + +  +++     +
Sbjct: 149 AKRTIDAYRYGL---KHLMNHYKLDFHGHHDALNDAKACAMITFRLLKHYDDL 198


>gi|229525619|ref|ZP_04415024.1| ribonuclease T [Vibrio cholerae bv. albensis VL426]
 gi|229339200|gb|EEO04217.1| ribonuclease T [Vibrio cholerae bv. albensis VL426]
          Length = 224

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L            T    + P  G      AL+  G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTVHFHVEPFEGANLEKAALEFTG 79

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                  +  +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 80  IYDPFSPLRGAVSEDHALKEIYRLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 199

Query: 176 VGGSQIN 182
                + 
Sbjct: 200 NQWKALG 206


>gi|307709092|ref|ZP_07645551.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK564]
 gi|307620038|gb|EFN99155.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK564]
          Length = 816

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIV-DHYSTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +   L     +  +P 
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAENLFFEGYELRNPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                L+         +  L  LC+  GI + H   H AL D+   +++ + +    +Q+
Sbjct: 116 VDTVELAQVFFPE-MEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKIAQL 172

Query: 182 NFGF 185
             G 
Sbjct: 173 PKGL 176


>gi|148825392|ref|YP_001290145.1| ribonuclease T [Haemophilus influenzae PittEE]
 gi|229846411|ref|ZP_04466519.1| ribonuclease T [Haemophilus influenzae 7P49H1]
 gi|166228565|sp|A5UAG1|RNT_HAEIE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|148715552|gb|ABQ97762.1| ribonuclease T [Haemophilus influenzae PittEE]
 gi|229810504|gb|EEP46222.1| ribonuclease T [Haemophilus influenzae 7P49H1]
          Length = 229

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   +PE+LK +G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +        + Q +  +AHNA FD  F+ A  +R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMIRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + +       +  L   C    I    +  H AL D+   ++++  M+ 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACLAAKIPFDGKQAHSALYDTERTAELFCYMVN 202

Query: 177 GGSQIN 182
               + 
Sbjct: 203 HLKDLG 208


>gi|331683160|ref|ZP_08383761.1| ribonuclease T [Escherichia coli H299]
 gi|331079375|gb|EGI50572.1| ribonuclease T [Escherichia coli H299]
          Length = 215

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHNFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L+  C+  G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|83312383|ref|YP_422647.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
 gi|82947224|dbj|BAE52088.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
          Length = 215

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 22/194 (11%)

Query: 8   RKIVFDIETTGLD----------SKNDR----IIEIGAVELLDYSK---TNRTFQVFLCP 50
           R +  D ETTG             K  R    +IEIG +EL+   +   T  ++Q  L P
Sbjct: 12  RIVAIDAETTGFKVPTPAEIKKMPKGLRLPGVVIEIGCLELVRGDEGWKTGESWQRRLQP 71

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
            G   S  ++ +HGI+   LK  PSF  +  +F  F  +      +   + +        
Sbjct: 72  GG-PISKASIDVHGISPAELKTAPSFRDVLDDFEAFIGQDALLAHSAENEMEFLNFEYAR 130

Query: 111 QRINKDPLDPS---RIIDTLSIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDSHL 166
                           + T  ++R+  P     L+ LC R  +        HGALLD+ L
Sbjct: 131 AGRCGFDEMIFGDGDFVCTQELSRQFFPGVPGSLDVLCDRLWVDRSDRFEHHGALLDAIL 190

Query: 167 LSDVYIKMMVGGSQ 180
            ++ ++KM  G  Q
Sbjct: 191 TAEAFMKMAGGFVQ 204


>gi|229523203|ref|ZP_04412610.1| ribonuclease T [Vibrio cholerae TM 11079-80]
 gi|229339566|gb|EEO04581.1| ribonuclease T [Vibrio cholerae TM 11079-80]
          Length = 224

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L            T    + P  G      AL+  G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTVHFHVEPFEGANLEKAALEFTG 79

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                  +  +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 80  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 199

Query: 176 VGGSQIN 182
                + 
Sbjct: 200 NQWKALG 206


>gi|260587155|ref|ZP_05853068.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
 gi|260542350|gb|EEX22919.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
          Length = 244

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 8/173 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLC-PNGRKNSPEALKLHG 64
           + FD ETTGL++++ +IIE+ A+ +        +   +  VF+  P G +   + ++L G
Sbjct: 15  VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQKIVELTG 74

Query: 65  ITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           ITDE    +  + +   + F +         +AHNA+FD+ F    L+R      +  + 
Sbjct: 75  ITDEQLENEGITEAEAAARFTELIGGGRVLLVAHNAQFDLLFTAEMLRRHGNGGPEALKA 134

Query: 124 IDTLS--IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D L      +   +  + L +    Y +    ++ H A+ D   L +V   M
Sbjct: 135 ADYLDSLTVYKDRRAYPHKLANAILTYKLEDKVQNSHRAIDDVAALFEVCKAM 187


>gi|51597447|ref|YP_071638.1| bacteriophage protein [Yersinia pseudotuberculosis IP 32953]
 gi|186896564|ref|YP_001873676.1| exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590729|emb|CAH22374.1| putative conserved bacteriophage protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186699590|gb|ACC90219.1| Exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis PB1/+]
          Length = 233

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             ++ D ETTGLD     I+EI  ++ +            + P G     +   +HGIT+
Sbjct: 59  NYLILDTETTGLD-NAAEIVEISIIDCMGNVL----LDTLIKPLG-FIPSDVEAIHGITN 112

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97
           + + + P +  I  +F +    +N      
Sbjct: 113 KMVDNAPHWCDIHEKFIEIIKSRNFVAYNS 142


>gi|330838686|ref|YP_004413266.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena
           ATCC 35185]
 gi|329746450|gb|AEB99806.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena
           ATCC 35185]
          Length = 186

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 7/162 (4%)

Query: 6   KMRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            M  I  D ET TG     +    +  VE+ D       +   + P G +     + +HG
Sbjct: 1   MMNYIAIDFETATG---SMNSACSVATVEVRDGQL-KEGWTTLIQPPGLRFDSFNIGIHG 56

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + + D P+F+ ++ E  +         +AHNA FD+G + A L              
Sbjct: 57  ISPKDVTDAPTFAEVWEELKERLAG--KIVVAHNASFDMGVLKASLLANRLQAPYFRTCC 114

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
                 +       + LN++     I   H            
Sbjct: 115 TVRIARKVWPALDDHKLNTVGAHLNINFRHHRALDDARTCAA 156


>gi|170768829|ref|ZP_02903282.1| ribonuclease T [Escherichia albertii TW07627]
 gi|170122377|gb|EDS91308.1| ribonuclease T [Escherichia albertii TW07627]
          Length = 215

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I     +               +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPNDPERGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L+  C+  G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMEFDSNQAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|170755896|ref|YP_001781901.1| exonuclease family protein [Clostridium botulinum B1 str. Okra]
 gi|169121108|gb|ACA44944.1| exonuclease family protein [Clostridium botulinum B1 str. Okra]
          Length = 253

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 15/207 (7%)

Query: 7   MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-S 56
           M  I+FD+E    +   +          II+IGAV+L +   T  TF   + P    N +
Sbjct: 1   MNYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAVKLNENLTTIDTFNALVKPEIYSNLN 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAELQRIN 114
           P    L  +T + L     F  ++ +F  F N+    +         ++       +   
Sbjct: 58  PFIKNLTNLTMDSLNKAKPFREVYKDFLKFLNKDRNIFCIWGMTDMKELFRNIVYYELDT 117

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +        +   +      P S N   S          +   H A  D+   + ++ K+
Sbjct: 118 ESIPKEYINVQAYTGKYLNFPKSINVGLSNAVELFHITKNNDFHNAFNDAFYTAKIFKKI 177

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP 201
                +       N    ++ +     
Sbjct: 178 YSEKIKTKIYKPANNSNTYRTKNTKTK 204


>gi|332343370|gb|AEE56704.1| ribonuclease T [Escherichia coli UMNK88]
          Length = 215

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L+  C+  G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|323462912|pdb|3NH0|A Chain A, Crystal Structure Of Rnase T In Complex With A
           Non-Preferred Ssdna (Aac)
 gi|323462913|pdb|3NH0|B Chain B, Crystal Structure Of Rnase T In Complex With A
           Non-Preferred Ssdna (Aac)
 gi|323462916|pdb|3NH1|A Chain A, Crystal Structure Of Rnase T In Complex With A Preferred
           Ssdna (Tagg) With Two Mg In The Active Site
 gi|323462917|pdb|3NH1|B Chain B, Crystal Structure Of Rnase T In Complex With A Preferred
           Ssdna (Tagg) With Two Mg In The Active Site
 gi|323462918|pdb|3NH1|C Chain C, Crystal Structure Of Rnase T In Complex With A Preferred
           Ssdna (Tagg) With Two Mg In The Active Site
 gi|323462919|pdb|3NH1|D Chain D, Crystal Structure Of Rnase T In Complex With A Preferred
           Ssdna (Tagg) With Two Mg In The Active Site
 gi|323462924|pdb|3NH2|A Chain A, Crystal Structure Of Rnase T In Complex With A Stem Dna
           With A 3' Overhang
 gi|323462925|pdb|3NH2|B Chain B, Crystal Structure Of Rnase T In Complex With A Stem Dna
           With A 3' Overhang
 gi|323462928|pdb|3NH2|E Chain E, Crystal Structure Of Rnase T In Complex With A Stem Dna
           With A 3' Overhang
 gi|323462929|pdb|3NH2|F Chain F, Crystal Structure Of Rnase T In Complex With A Stem Dna
           With A 3' Overhang
          Length = 235

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 40  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 99

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 100 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 159

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L+  C+  G+       H AL D+   + ++ +++ 
Sbjct: 160 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 219

Query: 177 GGSQIN 182
              ++ 
Sbjct: 220 RWKRLG 225


>gi|323462903|pdb|3NGY|A Chain A, Crystal Structure Of Rnase T (E92g Mutant)
 gi|323462904|pdb|3NGY|B Chain B, Crystal Structure Of Rnase T (E92g Mutant)
 gi|323462905|pdb|3NGY|C Chain C, Crystal Structure Of Rnase T (E92g Mutant)
 gi|323462906|pdb|3NGY|D Chain D, Crystal Structure Of Rnase T (E92g Mutant)
 gi|323462908|pdb|3NGZ|A Chain A, Crystal Structure Of Rnase T In Complex With A
           Non-Preferred Ssdna (Gc) With One Mg In The Active Site
 gi|323462909|pdb|3NGZ|B Chain B, Crystal Structure Of Rnase T In Complex With A
           Non-Preferred Ssdna (Gc) With One Mg In The Active Site
          Length = 235

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 40  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 99

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 100 IDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 159

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L+  C+  G+       H AL D+   + ++ +++ 
Sbjct: 160 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 219

Query: 177 GGSQIN 182
              ++ 
Sbjct: 220 RWKRLG 225


>gi|323187079|gb|EFZ72395.1| ribonuclease T [Escherichia coli RN587/1]
          Length = 215

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPNDPDRGAISEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L+  C+  G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|300904499|ref|ZP_07122340.1| ribonuclease T [Escherichia coli MS 84-1]
 gi|300918020|ref|ZP_07134642.1| ribonuclease T [Escherichia coli MS 115-1]
 gi|301303165|ref|ZP_07209291.1| ribonuclease T [Escherichia coli MS 124-1]
 gi|300403565|gb|EFJ87103.1| ribonuclease T [Escherichia coli MS 84-1]
 gi|300414762|gb|EFJ98072.1| ribonuclease T [Escherichia coli MS 115-1]
 gi|300841574|gb|EFK69334.1| ribonuclease T [Escherichia coli MS 124-1]
 gi|315257547|gb|EFU37515.1| ribonuclease T [Escherichia coli MS 85-1]
          Length = 215

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L+  C+  G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|215486829|ref|YP_002329260.1| ribonuclease T [Escherichia coli O127:H6 str. E2348/69]
 gi|312966583|ref|ZP_07780803.1| ribonuclease T [Escherichia coli 2362-75]
 gi|331647141|ref|ZP_08348235.1| ribonuclease T [Escherichia coli M605]
 gi|331657625|ref|ZP_08358587.1| ribonuclease T [Escherichia coli TA206]
 gi|215264901|emb|CAS09287.1| ribonuclease T (RNase T) [Escherichia coli O127:H6 str. E2348/69]
 gi|281178725|dbj|BAI55055.1| ribonuclease T [Escherichia coli SE15]
 gi|312288693|gb|EFR16593.1| ribonuclease T [Escherichia coli 2362-75]
 gi|315299705|gb|EFU58947.1| ribonuclease T [Escherichia coli MS 16-3]
 gi|330911459|gb|EGH39969.1| ribonuclease T [Escherichia coli AA86]
 gi|331043924|gb|EGI16060.1| ribonuclease T [Escherichia coli M605]
 gi|331055873|gb|EGI27882.1| ribonuclease T [Escherichia coli TA206]
          Length = 215

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L+  C+  G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|16129610|ref|NP_416169.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89108494|ref|AP_002274.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. W3110]
 gi|170081315|ref|YP_001730635.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B]
 gi|238900868|ref|YP_002926664.1| ribonuclease T (RNase T) [Escherichia coli BW2952]
 gi|300951237|ref|ZP_07165090.1| ribonuclease T [Escherichia coli MS 116-1]
 gi|300958527|ref|ZP_07170660.1| ribonuclease T [Escherichia coli MS 175-1]
 gi|301027673|ref|ZP_07190989.1| ribonuclease T [Escherichia coli MS 196-1]
 gi|301647832|ref|ZP_07247616.1| ribonuclease T [Escherichia coli MS 146-1]
 gi|307138309|ref|ZP_07497665.1| ribonuclease T [Escherichia coli H736]
 gi|331642247|ref|ZP_08343382.1| ribonuclease T [Escherichia coli H736]
 gi|266952|sp|P30014|RNT_ECOLI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|147688|gb|AAC37008.1| RNaseT [Escherichia coli]
 gi|1787941|gb|AAC74724.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675063|dbj|BAA15418.2| ribonuclease T (RNase T) [Escherichia coli str. K12 substr. W3110]
 gi|169889150|gb|ACB02857.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B]
 gi|238863473|gb|ACR65471.1| ribonuclease T (RNase T) [Escherichia coli BW2952]
 gi|260449223|gb|ACX39645.1| ribonuclease T [Escherichia coli DH1]
 gi|299879216|gb|EFI87427.1| ribonuclease T [Escherichia coli MS 196-1]
 gi|300314801|gb|EFJ64585.1| ribonuclease T [Escherichia coli MS 175-1]
 gi|300449493|gb|EFK13113.1| ribonuclease T [Escherichia coli MS 116-1]
 gi|301074022|gb|EFK88828.1| ribonuclease T [Escherichia coli MS 146-1]
 gi|309701879|emb|CBJ01191.1| ribonuclease T [Escherichia coli ETEC H10407]
 gi|315136293|dbj|BAJ43452.1| ribonuclease T [Escherichia coli DH1]
 gi|315618843|gb|EFU99426.1| ribonuclease T [Escherichia coli 3431]
 gi|323937257|gb|EGB33536.1| ribonuclease T [Escherichia coli E1520]
 gi|323940680|gb|EGB36871.1| ribonuclease T [Escherichia coli E482]
 gi|331039045|gb|EGI11265.1| ribonuclease T [Escherichia coli H736]
          Length = 215

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L+  C+  G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|15802066|ref|NP_288088.1| ribonuclease T [Escherichia coli O157:H7 EDL933]
 gi|15831615|ref|NP_310388.1| ribonuclease T [Escherichia coli O157:H7 str. Sakai]
 gi|24113043|ref|NP_707553.1| ribonuclease T [Shigella flexneri 2a str. 301]
 gi|26247900|ref|NP_753940.1| ribonuclease T [Escherichia coli CFT073]
 gi|30063168|ref|NP_837339.1| ribonuclease T [Shigella flexneri 2a str. 2457T]
 gi|74312020|ref|YP_310439.1| ribonuclease T [Shigella sonnei Ss046]
 gi|82777129|ref|YP_403478.1| ribonuclease T [Shigella dysenteriae Sd197]
 gi|91210866|ref|YP_540852.1| ribonuclease T [Escherichia coli UTI89]
 gi|110641774|ref|YP_669504.1| ribonuclease T [Escherichia coli 536]
 gi|117623836|ref|YP_852749.1| ribonuclease T [Escherichia coli APEC O1]
 gi|157159164|ref|YP_001462944.1| ribonuclease T [Escherichia coli E24377A]
 gi|157161115|ref|YP_001458433.1| ribonuclease T [Escherichia coli HS]
 gi|168752335|ref|ZP_02777357.1| ribonuclease T [Escherichia coli O157:H7 str. EC4113]
 gi|168759015|ref|ZP_02784022.1| ribonuclease T [Escherichia coli O157:H7 str. EC4401]
 gi|168765301|ref|ZP_02790308.1| ribonuclease T [Escherichia coli O157:H7 str. EC4501]
 gi|168771196|ref|ZP_02796203.1| ribonuclease T [Escherichia coli O157:H7 str. EC4486]
 gi|168775884|ref|ZP_02800891.1| ribonuclease T [Escherichia coli O157:H7 str. EC4196]
 gi|168783923|ref|ZP_02808930.1| ribonuclease T [Escherichia coli O157:H7 str. EC4076]
 gi|168789491|ref|ZP_02814498.1| ribonuclease T [Escherichia coli O157:H7 str. EC869]
 gi|168802776|ref|ZP_02827783.1| ribonuclease T [Escherichia coli O157:H7 str. EC508]
 gi|170019996|ref|YP_001724950.1| ribonuclease T [Escherichia coli ATCC 8739]
 gi|170681755|ref|YP_001743601.1| ribonuclease T [Escherichia coli SMS-3-5]
 gi|187731741|ref|YP_001880408.1| ribonuclease T [Shigella boydii CDC 3083-94]
 gi|188496363|ref|ZP_03003633.1| ribonuclease T [Escherichia coli 53638]
 gi|191165895|ref|ZP_03027732.1| ribonuclease T [Escherichia coli B7A]
 gi|191173445|ref|ZP_03034973.1| ribonuclease T [Escherichia coli F11]
 gi|193064949|ref|ZP_03046025.1| ribonuclease T [Escherichia coli E22]
 gi|193070264|ref|ZP_03051208.1| ribonuclease T [Escherichia coli E110019]
 gi|194426088|ref|ZP_03058644.1| ribonuclease T [Escherichia coli B171]
 gi|194436646|ref|ZP_03068747.1| ribonuclease T [Escherichia coli 101-1]
 gi|195940215|ref|ZP_03085597.1| ribonuclease T [Escherichia coli O157:H7 str. EC4024]
 gi|208810464|ref|ZP_03252340.1| ribonuclease T [Escherichia coli O157:H7 str. EC4206]
 gi|208816877|ref|ZP_03257997.1| ribonuclease T [Escherichia coli O157:H7 str. EC4045]
 gi|208820253|ref|ZP_03260573.1| ribonuclease T [Escherichia coli O157:H7 str. EC4042]
 gi|209396384|ref|YP_002270721.1| ribonuclease T [Escherichia coli O157:H7 str. EC4115]
 gi|209918966|ref|YP_002293050.1| ribonuclease T [Escherichia coli SE11]
 gi|217328725|ref|ZP_03444806.1| ribonuclease T [Escherichia coli O157:H7 str. TW14588]
 gi|218554220|ref|YP_002387133.1| ribonuclease T [Escherichia coli IAI1]
 gi|218558523|ref|YP_002391436.1| ribonuclease T [Escherichia coli S88]
 gi|218689598|ref|YP_002397810.1| ribonuclease T [Escherichia coli ED1a]
 gi|218695215|ref|YP_002402882.1| ribonuclease T [Escherichia coli 55989]
 gi|218699780|ref|YP_002407409.1| ribonuclease T [Escherichia coli IAI39]
 gi|218705152|ref|YP_002412671.1| ribonuclease T [Escherichia coli UMN026]
 gi|227885930|ref|ZP_04003735.1| exoribonuclease T [Escherichia coli 83972]
 gi|237705597|ref|ZP_04536078.1| ribonuclease T [Escherichia sp. 3_2_53FAA]
 gi|253773389|ref|YP_003036220.1| ribonuclease T [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161714|ref|YP_003044822.1| ribonuclease T [Escherichia coli B str. REL606]
 gi|254793269|ref|YP_003078106.1| ribonuclease T [Escherichia coli O157:H7 str. TW14359]
 gi|256018153|ref|ZP_05432018.1| ribonuclease T [Shigella sp. D9]
 gi|260843958|ref|YP_003221736.1| ribonuclease T [Escherichia coli O103:H2 str. 12009]
 gi|260855477|ref|YP_003229368.1| ribonuclease T [Escherichia coli O26:H11 str. 11368]
 gi|260868144|ref|YP_003234546.1| ribonuclease T [Escherichia coli O111:H- str. 11128]
 gi|261227902|ref|ZP_05942183.1| ribonuclease T (RNase T) [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258364|ref|ZP_05950897.1| ribonuclease T [Escherichia coli O157:H7 str. FRIK966]
 gi|291282784|ref|YP_003499602.1| Ribonuclease T [Escherichia coli O55:H7 str. CB9615]
 gi|293405152|ref|ZP_06649144.1| ribonuclease T [Escherichia coli FVEC1412]
 gi|293409965|ref|ZP_06653541.1| ribonuclease T [Escherichia coli B354]
 gi|293414968|ref|ZP_06657611.1| ribonuclease T [Escherichia coli B185]
 gi|293446028|ref|ZP_06662450.1| ribonuclease T [Escherichia coli B088]
 gi|297520520|ref|ZP_06938906.1| ribonuclease T [Escherichia coli OP50]
 gi|298380798|ref|ZP_06990397.1| ribonuclease T [Escherichia coli FVEC1302]
 gi|300819590|ref|ZP_07099783.1| ribonuclease T [Escherichia coli MS 107-1]
 gi|300821475|ref|ZP_07101622.1| ribonuclease T [Escherichia coli MS 119-7]
 gi|300901538|ref|ZP_07119609.1| ribonuclease T [Escherichia coli MS 198-1]
 gi|300924684|ref|ZP_07140632.1| ribonuclease T [Escherichia coli MS 182-1]
 gi|300930881|ref|ZP_07146250.1| ribonuclease T [Escherichia coli MS 187-1]
 gi|300939029|ref|ZP_07153724.1| ribonuclease T [Escherichia coli MS 21-1]
 gi|300987874|ref|ZP_07178425.1| ribonuclease T [Escherichia coli MS 200-1]
 gi|300995389|ref|ZP_07181069.1| ribonuclease T [Escherichia coli MS 45-1]
 gi|301026836|ref|ZP_07190236.1| ribonuclease T [Escherichia coli MS 69-1]
 gi|301051019|ref|ZP_07197863.1| ribonuclease T [Escherichia coli MS 185-1]
 gi|301326587|ref|ZP_07219926.1| ribonuclease T [Escherichia coli MS 78-1]
 gi|306813383|ref|ZP_07447573.1| ribonuclease T [Escherichia coli NC101]
 gi|307310775|ref|ZP_07590421.1| ribonuclease T [Escherichia coli W]
 gi|309788378|ref|ZP_07682982.1| ribonuclease T [Shigella dysenteriae 1617]
 gi|309793418|ref|ZP_07687845.1| ribonuclease T [Escherichia coli MS 145-7]
 gi|312969674|ref|ZP_07783857.1| ribonuclease T [Escherichia coli 1827-70]
 gi|331653048|ref|ZP_08354053.1| ribonuclease T [Escherichia coli M718]
 gi|331663127|ref|ZP_08364037.1| ribonuclease T [Escherichia coli TA143]
 gi|331668331|ref|ZP_08369179.1| ribonuclease T [Escherichia coli TA271]
 gi|332279200|ref|ZP_08391613.1| ribonuclease T [Shigella sp. D9]
 gi|54039257|sp|P66682|RNT_ECO57 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|54039258|sp|P66683|RNT_SHIFL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|54042001|sp|P66681|RNT_ECOL6 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|122423656|sp|Q1RBE3|RNT_ECOUT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|123148046|sp|Q0THH6|RNT_ECOL5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|123562458|sp|Q32FB8|RNT_SHIDS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|123617229|sp|Q3Z208|RNT_SHISS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|166228563|sp|A1ABJ5|RNT_ECOK1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|166991088|sp|A7ZMB5|RNT_ECO24 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|166991089|sp|A8A0J6|RNT_ECOHS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|12515647|gb|AAG56641.1|AE005388_6 RNase T, degrades tRNA [Escherichia coli O157:H7 str. EDL933]
 gi|26108303|gb|AAN80505.1|AE016761_80 Ribonuclease T [Escherichia coli CFT073]
 gi|13361828|dbj|BAB35784.1| RNase T [Escherichia coli O157:H7 str. Sakai]
 gi|24052011|gb|AAN43260.1| RNase T [Shigella flexneri 2a str. 301]
 gi|30041420|gb|AAP17148.1| RNase T [Shigella flexneri 2a str. 2457T]
 gi|73855497|gb|AAZ88204.1| RNase T [Shigella sonnei Ss046]
 gi|81241277|gb|ABB61987.1| RNase T [Shigella dysenteriae Sd197]
 gi|91072440|gb|ABE07321.1| RNase T, degrades tRNA [Escherichia coli UTI89]
 gi|110343366|gb|ABG69603.1| ribonuclease T [Escherichia coli 536]
 gi|115512960|gb|ABJ01035.1| RNase T [Escherichia coli APEC O1]
 gi|157066795|gb|ABV06050.1| ribonuclease T [Escherichia coli HS]
 gi|157081194|gb|ABV20902.1| ribonuclease T [Escherichia coli E24377A]
 gi|169754924|gb|ACA77623.1| ribonuclease T [Escherichia coli ATCC 8739]
 gi|170519473|gb|ACB17651.1| ribonuclease T [Escherichia coli SMS-3-5]
 gi|187428733|gb|ACD08007.1| ribonuclease T [Shigella boydii CDC 3083-94]
 gi|187768648|gb|EDU32492.1| ribonuclease T [Escherichia coli O157:H7 str. EC4196]
 gi|188013802|gb|EDU51924.1| ribonuclease T [Escherichia coli O157:H7 str. EC4113]
 gi|188491562|gb|EDU66665.1| ribonuclease T [Escherichia coli 53638]
 gi|188998818|gb|EDU67804.1| ribonuclease T [Escherichia coli O157:H7 str. EC4076]
 gi|189354299|gb|EDU72718.1| ribonuclease T [Escherichia coli O157:H7 str. EC4401]
 gi|189360025|gb|EDU78444.1| ribonuclease T [Escherichia coli O157:H7 str. EC4486]
 gi|189364907|gb|EDU83323.1| ribonuclease T [Escherichia coli O157:H7 str. EC4501]
 gi|189370964|gb|EDU89380.1| ribonuclease T [Escherichia coli O157:H7 str. EC869]
 gi|189375329|gb|EDU93745.1| ribonuclease T [Escherichia coli O157:H7 str. EC508]
 gi|190904026|gb|EDV63738.1| ribonuclease T [Escherichia coli B7A]
 gi|190906287|gb|EDV65898.1| ribonuclease T [Escherichia coli F11]
 gi|192927436|gb|EDV82054.1| ribonuclease T [Escherichia coli E22]
 gi|192956445|gb|EDV86904.1| ribonuclease T [Escherichia coli E110019]
 gi|194416143|gb|EDX32409.1| ribonuclease T [Escherichia coli B171]
 gi|194424678|gb|EDX40664.1| ribonuclease T [Escherichia coli 101-1]
 gi|208724980|gb|EDZ74687.1| ribonuclease T [Escherichia coli O157:H7 str. EC4206]
 gi|208731220|gb|EDZ79909.1| ribonuclease T [Escherichia coli O157:H7 str. EC4045]
 gi|208740376|gb|EDZ88058.1| ribonuclease T [Escherichia coli O157:H7 str. EC4042]
 gi|209157784|gb|ACI35217.1| ribonuclease T [Escherichia coli O157:H7 str. EC4115]
 gi|209769438|gb|ACI83031.1| RNase T [Escherichia coli]
 gi|209769440|gb|ACI83032.1| RNase T [Escherichia coli]
 gi|209769442|gb|ACI83033.1| RNase T [Escherichia coli]
 gi|209769444|gb|ACI83034.1| RNase T [Escherichia coli]
 gi|209769446|gb|ACI83035.1| RNase T [Escherichia coli]
 gi|209912225|dbj|BAG77299.1| ribonuclease T [Escherichia coli SE11]
 gi|217318072|gb|EEC26499.1| ribonuclease T [Escherichia coli O157:H7 str. TW14588]
 gi|218351947|emb|CAU97679.1| ribonuclease T (RNase T) [Escherichia coli 55989]
 gi|218360988|emb|CAQ98561.1| ribonuclease T (RNase T) [Escherichia coli IAI1]
 gi|218365292|emb|CAR03013.1| ribonuclease T (RNase T) [Escherichia coli S88]
 gi|218369766|emb|CAR17537.1| ribonuclease T (RNase T) [Escherichia coli IAI39]
 gi|218427162|emb|CAR08045.2| ribonuclease T (RNase T) [Escherichia coli ED1a]
 gi|218432249|emb|CAR13139.1| ribonuclease T (RNase T) [Escherichia coli UMN026]
 gi|222033411|emb|CAP76152.1| ribonuclease T [Escherichia coli LF82]
 gi|226900354|gb|EEH86613.1| ribonuclease T [Escherichia sp. 3_2_53FAA]
 gi|227837109|gb|EEJ47575.1| exoribonuclease T [Escherichia coli 83972]
 gi|242377382|emb|CAQ32129.1| RNase T [Escherichia coli BL21(DE3)]
 gi|253324433|gb|ACT29035.1| ribonuclease T [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973615|gb|ACT39286.1| ribonuclease T [Escherichia coli B str. REL606]
 gi|253977810|gb|ACT43480.1| ribonuclease T [Escherichia coli BL21(DE3)]
 gi|254592669|gb|ACT72030.1| ribonuclease T (RNase T) [Escherichia coli O157:H7 str. TW14359]
 gi|257754126|dbj|BAI25628.1| ribonuclease T [Escherichia coli O26:H11 str. 11368]
 gi|257759105|dbj|BAI30602.1| ribonuclease T [Escherichia coli O103:H2 str. 12009]
 gi|257764500|dbj|BAI35995.1| ribonuclease T [Escherichia coli O111:H- str. 11128]
 gi|281601087|gb|ADA74071.1| Ribonuclease T [Shigella flexneri 2002017]
 gi|284921576|emb|CBG34648.1| ribonuclease T [Escherichia coli 042]
 gi|290762657|gb|ADD56618.1| Ribonuclease T [Escherichia coli O55:H7 str. CB9615]
 gi|291322858|gb|EFE62286.1| ribonuclease T [Escherichia coli B088]
 gi|291427360|gb|EFF00387.1| ribonuclease T [Escherichia coli FVEC1412]
 gi|291432616|gb|EFF05595.1| ribonuclease T [Escherichia coli B185]
 gi|291470433|gb|EFF12917.1| ribonuclease T [Escherichia coli B354]
 gi|294491548|gb|ADE90304.1| ribonuclease T [Escherichia coli IHE3034]
 gi|298278240|gb|EFI19754.1| ribonuclease T [Escherichia coli FVEC1302]
 gi|300297314|gb|EFJ53699.1| ribonuclease T [Escherichia coli MS 185-1]
 gi|300306022|gb|EFJ60542.1| ribonuclease T [Escherichia coli MS 200-1]
 gi|300355068|gb|EFJ70938.1| ribonuclease T [Escherichia coli MS 198-1]
 gi|300395276|gb|EFJ78814.1| ribonuclease T [Escherichia coli MS 69-1]
 gi|300406150|gb|EFJ89688.1| ribonuclease T [Escherichia coli MS 45-1]
 gi|300419111|gb|EFK02422.1| ribonuclease T [Escherichia coli MS 182-1]
 gi|300456057|gb|EFK19550.1| ribonuclease T [Escherichia coli MS 21-1]
 gi|300461297|gb|EFK24790.1| ribonuclease T [Escherichia coli MS 187-1]
 gi|300525978|gb|EFK47047.1| ribonuclease T [Escherichia coli MS 119-7]
 gi|300527838|gb|EFK48900.1| ribonuclease T [Escherichia coli MS 107-1]
 gi|300846749|gb|EFK74509.1| ribonuclease T [Escherichia coli MS 78-1]
 gi|305853128|gb|EFM53568.1| ribonuclease T [Escherichia coli NC101]
 gi|306908953|gb|EFN39449.1| ribonuclease T [Escherichia coli W]
 gi|307553675|gb|ADN46450.1| ribonuclease T [Escherichia coli ABU 83972]
 gi|307626861|gb|ADN71165.1| ribonuclease T [Escherichia coli UM146]
 gi|308123005|gb|EFO60267.1| ribonuclease T [Escherichia coli MS 145-7]
 gi|308923760|gb|EFP69263.1| ribonuclease T [Shigella dysenteriae 1617]
 gi|310337959|gb|EFQ03048.1| ribonuclease T [Escherichia coli 1827-70]
 gi|312946253|gb|ADR27080.1| ribonuclease T [Escherichia coli O83:H1 str. NRG 857C]
 gi|313648931|gb|EFS13368.1| ribonuclease T [Shigella flexneri 2a str. 2457T]
 gi|315060959|gb|ADT75286.1| ribonuclease T (RNase T) [Escherichia coli W]
 gi|315286357|gb|EFU45793.1| ribonuclease T [Escherichia coli MS 110-3]
 gi|320174139|gb|EFW49304.1| Ribonuclease T [Shigella dysenteriae CDC 74-1112]
 gi|320181325|gb|EFW56244.1| Ribonuclease T [Shigella boydii ATCC 9905]
 gi|320188340|gb|EFW63002.1| Ribonuclease T [Escherichia coli O157:H7 str. EC1212]
 gi|320195450|gb|EFW70075.1| Ribonuclease T [Escherichia coli WV_060327]
 gi|320197835|gb|EFW72443.1| Ribonuclease T [Escherichia coli EC4100B]
 gi|320642007|gb|EFX11371.1| ribonuclease T [Escherichia coli O157:H7 str. G5101]
 gi|320647324|gb|EFX16132.1| ribonuclease T [Escherichia coli O157:H- str. 493-89]
 gi|320652618|gb|EFX20887.1| ribonuclease T [Escherichia coli O157:H- str. H 2687]
 gi|320653004|gb|EFX21200.1| ribonuclease T [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320658687|gb|EFX26364.1| ribonuclease T [Escherichia coli O55:H7 str. USDA 5905]
 gi|323152841|gb|EFZ39111.1| ribonuclease T [Escherichia coli EPECa14]
 gi|323169213|gb|EFZ54889.1| ribonuclease T [Shigella sonnei 53G]
 gi|323169961|gb|EFZ55617.1| ribonuclease T [Escherichia coli LT-68]
 gi|323180968|gb|EFZ66506.1| ribonuclease T [Escherichia coli 1180]
 gi|323186075|gb|EFZ71431.1| ribonuclease T [Escherichia coli 1357]
 gi|323378470|gb|ADX50738.1| ribonuclease T [Escherichia coli KO11]
 gi|323948052|gb|EGB44044.1| ribonuclease T [Escherichia coli H120]
 gi|323952162|gb|EGB48035.1| ribonuclease T [Escherichia coli H252]
 gi|323956663|gb|EGB52400.1| ribonuclease T [Escherichia coli H263]
 gi|323962144|gb|EGB57739.1| ribonuclease T [Escherichia coli H489]
 gi|323968420|gb|EGB63826.1| ribonuclease T [Escherichia coli M863]
 gi|323973968|gb|EGB69140.1| ribonuclease T [Escherichia coli TA007]
 gi|323978209|gb|EGB73295.1| ribonuclease T [Escherichia coli TW10509]
 gi|324007017|gb|EGB76236.1| ribonuclease T [Escherichia coli MS 57-2]
 gi|324011423|gb|EGB80642.1| ribonuclease T [Escherichia coli MS 60-1]
 gi|324016541|gb|EGB85760.1| ribonuclease T [Escherichia coli MS 117-3]
 gi|324119138|gb|EGC13026.1| ribonuclease T [Escherichia coli E1167]
 gi|326342019|gb|EGD65800.1| Ribonuclease T [Escherichia coli O157:H7 str. 1044]
 gi|326343571|gb|EGD67333.1| Ribonuclease T [Escherichia coli O157:H7 str. 1125]
 gi|327252769|gb|EGE64423.1| ribonuclease T [Escherichia coli STEC_7v]
 gi|331049146|gb|EGI21218.1| ribonuclease T [Escherichia coli M718]
 gi|331058926|gb|EGI30903.1| ribonuclease T [Escherichia coli TA143]
 gi|331063525|gb|EGI35436.1| ribonuclease T [Escherichia coli TA271]
 gi|332101552|gb|EGJ04898.1| ribonuclease T [Shigella sp. D9]
 gi|332756966|gb|EGJ87309.1| ribonuclease T [Shigella flexneri 4343-70]
 gi|332758172|gb|EGJ88497.1| ribonuclease T [Shigella flexneri 2747-71]
 gi|332758486|gb|EGJ88807.1| ribonuclease T [Shigella flexneri K-671]
 gi|332767056|gb|EGJ97255.1| ribonuclease T [Shigella flexneri 2930-71]
 gi|333004001|gb|EGK23536.1| ribonuclease T [Shigella flexneri K-218]
 gi|333005308|gb|EGK24828.1| ribonuclease T [Shigella flexneri VA-6]
 gi|333005888|gb|EGK25404.1| ribonuclease T [Shigella flexneri K-272]
 gi|333017888|gb|EGK37193.1| ribonuclease T [Shigella flexneri K-304]
 gi|333018868|gb|EGK38161.1| ribonuclease T [Shigella flexneri K-227]
          Length = 215

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L+  C+  G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|268601098|ref|ZP_06135265.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18]
 gi|268585229|gb|EEZ49905.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18]
          Length = 264

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPQFVAELTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +          +AHN++FD  F+    +         S  + +
Sbjct: 85  DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++RR +P              + I    +H A+ D   L D     +    
Sbjct: 141 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 192


>gi|240115419|ref|ZP_04729481.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID18]
          Length = 255

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPQFVAELTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +          +AHN++FD  F+    +         S  + +
Sbjct: 76  DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++RR +P              + I    +H A+ D   L D     +    
Sbjct: 132 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 183


>gi|119468877|ref|ZP_01611902.1| putative DNA polymerase, exonuclease activity [Alteromonadales
           bacterium TW-7]
 gi|119447529|gb|EAW28796.1| putative DNA polymerase, exonuclease activity [Alteromonadales
           bacterium TW-7]
          Length = 207

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 53/176 (30%), Gaps = 4/176 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E TGLDSK   I+ +  V + +        Q F+  + +      +     TD
Sbjct: 24  RYLVIDLELTGLDSKQHEIVSVAWVVIDNQCIKMSESQHFINKDVKSLEQSPVFHGISTD 83

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDT 126
              + +   S          +  +   + HNA  D GF+   L+                
Sbjct: 84  SVAQGQ---SLQSILMSLSAHFSDCILVFHNAMLDWGFLKLALKNAGVTQRPKLIIDTLQ 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +   R    +S   L+ L             +               ++    QI 
Sbjct: 141 IEKKRLLQHASDIKLDDLTLNECRNRYDLPSYHCHHALTDAQATAELLLAQCHQIG 196


>gi|332687228|ref|YP_004457002.1| exonuclease [Melissococcus plutonius ATCC 35311]
 gi|332371237|dbj|BAK22193.1| exonuclease [Melissococcus plutonius ATCC 35311]
          Length = 176

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 8/166 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     +      +  V++ +    +  +   + P  +    + +++HGI 
Sbjct: 1   MNFIAMDFET--ASHERHSACSLALVKVENSRIVDE-YYTLIQPETQFF-WKNIQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E + D P F     +    F + N   +AHNA FD   + + L        +   +   
Sbjct: 57  PEDVTDAPKF-PEIWQGIQLFFQLNQLIVAHNAAFDCNVLASCLNYYKLPQPNYLSLCTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +  +       + L+++C+         + H AL DS   + + +
Sbjct: 116 KTSRKFFRELPNHKLDTICRALN---IPLNHHNALDDSRACAKILL 158


>gi|153834777|ref|ZP_01987444.1| gp41 [Vibrio harveyi HY01]
 gi|148868812|gb|EDL67880.1| gp41 [Vibrio harveyi HY01]
          Length = 218

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 58/189 (30%), Gaps = 21/189 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M + +    I+ D ETTGL S    I+E  A+               + P       +A 
Sbjct: 12  MKKLSTENAIIIDTETTGLGSD-AEIVEFTAICADSGKVIVNE---LVKPTC-SIPADAT 66

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI----------------AHNAKFDVG 104
            +HGIT+E +KD P F  +FS  +          I                  NA +   
Sbjct: 67  AIHGITNEDVKDAPDFHLVFSNHFLPLLNGRPIIIYNSDFDTRLIIQSLDKHCNAAYVQS 126

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
             +   +                             L++ C +  + +S  + H AL D 
Sbjct: 127 VHDLFFKFCIPQCAMLWYAEFFGVWNEHHEDYKWQSLSNACAQQSVDVSDLTAHRALADC 186

Query: 165 HLLSDVYIK 173
            +   +   
Sbjct: 187 EMTRRLIHA 195


>gi|124002773|ref|ZP_01687625.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134]
 gi|123992001|gb|EAY31388.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134]
          Length = 270

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 69/204 (33%), Gaps = 10/204 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG +   DRI+E   ++ L +           + P       E+  +HGI DE
Sbjct: 12  VFFDLETTGTNIAKDRIVEWAFIKALPNGEIEKDV--KKINPE-MPIPIESSLVHGIYDE 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P+F SI      F    +              +   L+      ++  +++D   
Sbjct: 69  HVKDAPTFKSIAKNLVKFLEGCDLAGYNIVRFDVPVLVEEFLRVGVDFSVNNRKLVDAQK 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           I     P       +   ++    S    H A  D+    +V    +          K  
Sbjct: 129 IFFMMEP----RTLTAAYKFYCNKSLEDAHTAEADTVATLEVLNAQIHHYE--GVEIKDK 182

Query: 189 EDRFFKEEKKTVPNISLLKRDKPL 212
           E   F      V  +  L  DK +
Sbjct: 183 EGNSFVPVHNDVNKLHELVNDKIV 206


>gi|78486054|ref|YP_391979.1| DNA polymerase III subunit epsilon [Thiomicrospira crunogena XCL-2]
 gi|78364340|gb|ABB42305.1| conserved hypothetical protein containing exonuclease domain
           [Thiomicrospira crunogena XCL-2]
          Length = 293

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 66/226 (29%), Gaps = 17/226 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIG--AVELLD-----YSKTNRTFQVFLCPNGRKNSPEALKLH 63
           + D ETTGLD++   IIE+G   VE           T + F   L     + S E  ++ 
Sbjct: 45  IIDTETTGLDTRVCEIIELGYQIVEFDSQGNFYQILTAKNF---LNEPEGEISAEVTQVT 101

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDP 120
           G+T + +K      +             A   A +      + +  + ++       +D 
Sbjct: 102 GLTLDDVKGHQIPWAEVEADMADVQLCVAHNAAFDRPVVERYSDCFIDKVWGCSAVQVDW 161

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +    S ++               R    +   +       S      +  ++    Q
Sbjct: 162 FHLAKVGSRSQEFLCWKVGQFFYGAHRALDDVQALTHLLTFPISEAALPAFHFLLASVRQ 221

Query: 181 INFGFKTNEDRFFKEEKKTVP--NISLLKRDKPLFTRIT--KEELD 222
                K     F  ++            +R        +  +EE+ 
Sbjct: 222 QKVLIKATSAPFELKDDLKQRGYRWQPTERVWQKVFEASQQQEEIA 267


>gi|93006690|ref|YP_581127.1| ribonuclease T [Psychrobacter cryohalolentis K5]
 gi|92394368|gb|ABE75643.1| RNAse T [Psychrobacter cryohalolentis K5]
          Length = 246

 Score = 51.9 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 67/207 (32%), Gaps = 16/207 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-----------NGRK 54
           +V D+ET G +++ D ++EI  + +L   +        F   + P               
Sbjct: 40  VVVDVETAGFNAQTDALLEIACIPVLLNEQGVFYPGEAFNAHIEPFEGANLEPSALAFTG 99

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P       I ++             E     + +    I HNA FD+ F+NA + R N
Sbjct: 100 IDPNNPLRKAIAEDEKTALRRIFKGLKEVRRIEDCRQCVLIGHNAHFDLAFLNAAVLRTN 159

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +P               +    + +  CK  G+       H AL D+   ++++  
Sbjct: 160 NKSHNPFHNFSVFDTVTLSALAFGQTVLARACKAAGLDFDGNDAHSALYDTQKTAELFCY 219

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTV 200
           ++     +     +  +        + 
Sbjct: 220 ILNNYPMLANAMHSEPEITETATDNSK 246


>gi|269966452|ref|ZP_06180536.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
 gi|269828909|gb|EEZ83159.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
          Length = 248

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +  D ETTGL+S+ D I+ IG V   +D  + N +    + PN   N    +   
Sbjct: 58  FVSVDFETTGLNSEEDVILTIGLVPFTIDRVQCNGSAHWVVNPNRELNHESVIIHG 113


>gi|227538997|ref|ZP_03969046.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241200|gb|EEI91215.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 203

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 69/203 (33%), Gaps = 10/203 (4%)

Query: 9   KIVFDIE--TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            I  D E  T    +  + +  +G V +     T+  F   + P   +   +  ++HGI 
Sbjct: 6   FIAIDFELAT----AAYNSVCSVGIVRVDQGVITDE-FYSLVKPPKNEYMWQTTRVHGIK 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +   D P+F  I+ +  D    +           +V     +   ++   L    + + 
Sbjct: 61  PKDTADAPTFEEIYPKIKDLLQNKKMVAHNEKFDREVLSKTMKACGLDYRELHLPVMWEC 120

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            S   R     +  LN  C+  G      + H AL D+   + +Y+K      ++     
Sbjct: 121 TSKIYRDKGFKKTKLNLCCEIMG---IDLNHHEALSDAKAAAFLYLKQNEVTQELLDRVF 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRD 209
             E+   + ++          RD
Sbjct: 178 PAEELLIQPDEVAKKGEPDNGRD 200


>gi|121596441|ref|YP_988337.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42]
 gi|120608521|gb|ABM44261.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42]
          Length = 218

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 11  VFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG + ++  R  E+  V +      +R +Q  +   G +  P   +L GIT+  
Sbjct: 8   VIDFETTGMMPAQGARATEVAIVLMEGGRVVDR-YQSLMR-TGVRIPPFITQLTGITNAM 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ++  P  +++  E   F  +      AHNA FD  F  AELQ        P    
Sbjct: 66  VEAAPDAAAVMREAARFVGDAPMV--AHNAAFDRKFWQAELQHAGLAAPHPFACT 118


>gi|49079546|gb|AAT49904.1| PA3232 [synthetic construct]
          Length = 209

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 60/168 (35%), Gaps = 3/168 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I  D+ETT LD +   I+ IGAV +           ++++ P       E++++H +   
Sbjct: 33  ISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPP-SLDAESIRIHKLRRA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIIDTL 127
            L+ +        +   F  ++       +     +     +L                 
Sbjct: 92  DLEGQLQLEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISSLYH 151

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               R  P +  DL        + +    +H AL D+  ++ ++++++
Sbjct: 152 RKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLL 199


>gi|15598428|ref|NP_251922.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO1]
 gi|107102762|ref|ZP_01366680.1| hypothetical protein PaerPA_01003829 [Pseudomonas aeruginosa PACS2]
 gi|218890575|ref|YP_002439439.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa LESB58]
 gi|254236194|ref|ZP_04929517.1| hypothetical protein PACG_02159 [Pseudomonas aeruginosa C3719]
 gi|254241920|ref|ZP_04935242.1| hypothetical protein PA2G_02641 [Pseudomonas aeruginosa 2192]
 gi|9949354|gb|AAG06620.1|AE004746_4 probable nuclease [Pseudomonas aeruginosa PAO1]
 gi|126168125|gb|EAZ53636.1| hypothetical protein PACG_02159 [Pseudomonas aeruginosa C3719]
 gi|126195298|gb|EAZ59361.1| hypothetical protein PA2G_02641 [Pseudomonas aeruginosa 2192]
 gi|218770798|emb|CAW26563.1| probable nuclease [Pseudomonas aeruginosa LESB58]
          Length = 208

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 60/168 (35%), Gaps = 3/168 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I  D+ETT LD +   I+ IGAV +           ++++ P       E++++H +   
Sbjct: 33  ISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPP-SLDAESIRIHKLRRA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIIDTL 127
            L+ +        +   F  ++       +     +     +L                 
Sbjct: 92  DLEGQLQLEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISSLYH 151

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               R  P +  DL        + +    +H AL D+  ++ ++++++
Sbjct: 152 RKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLL 199


>gi|260887789|ref|ZP_05899052.1| exonuclease [Selenomonas sputigena ATCC 35185]
 gi|260862465|gb|EEX76965.1| exonuclease [Selenomonas sputigena ATCC 35185]
          Length = 202

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 7/162 (4%)

Query: 6   KMRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            M  I  D ET TG     +    +  VE+ D       +   + P G +     + +HG
Sbjct: 17  MMNYIAIDFETATG---SMNSACSVATVEVRDGQL-KEGWTTLIQPPGLRFDSFNIGIHG 72

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + + D P+F+ ++ E  +         +AHNA FD+G + A L              
Sbjct: 73  ISPKDVTDAPTFAEVWEELKERLAG--KIVVAHNASFDMGVLKASLLANRLQAPYFRTCC 130

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
                 +       + LN++     I   H            
Sbjct: 131 TVRIARKVWPALDDHKLNTVGAHLNINFRHHRALDDARTCAA 172


>gi|163751907|ref|ZP_02159120.1| exonuclease [Shewanella benthica KT99]
 gi|161328190|gb|EDP99355.1| exonuclease [Shewanella benthica KT99]
          Length = 227

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNG 52
          + I  D+E TGL+  +D+I+ IG + + +     ++  Q  +  +G
Sbjct: 41 KLIALDLEMTGLNPNHDQILSIGLIPIENNLLLLDKAEQKLIKVDG 86


>gi|312868848|ref|ZP_07729034.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus oris
           PB013-T2-3]
 gi|311095588|gb|EFQ53846.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus oris
           PB013-T2-3]
          Length = 282

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 4/171 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ET+GL+  + +II IGAV+ +    T  TF   +     K  P  +      + 
Sbjct: 113 FVSLDLETSGLNPSSAQIISIGAVKRVAGHTT--TFYRLVKLESGKKVPVDIARMTGLNN 170

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                       +        +    + +N  FD  F+   + R      +   +     
Sbjct: 171 ERLAAEGVLVKEALIDLQAFTKGLPIVGYNLLFDERFLQTAVIRTGIVQFNNKMVDVLPY 230

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +           L ++  +YG+   +   H +L D+    ++  K++    
Sbjct: 231 VKTTDKFCDNYHLTTVLAKYGVK--NEQPHNSLADATATMELVDKLIKIYG 279


>gi|311279484|ref|YP_003941715.1| ribonuclease T [Enterobacter cloacae SCF1]
 gi|308748679|gb|ADO48431.1| ribonuclease T [Enterobacter cloacae SCF1]
          Length = 217

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++E+ A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAITLKMDEQGWLMPDTTLHFHVEPFEGANLMPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +      +     N   A  +AHNA FD  F+ A  +R    
Sbjct: 80  IDPSNPLRGAVSEYDALHAIFKAVRKGIKDQNCNRAIMVAHNATFDHSFVMAAAERAGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACIAAGMAFDGAQAHSALYDTEQTAQLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|152990071|ref|YP_001355793.1| DNA polymerase III subunit epsilon [Nitratiruptor sp. SB155-2]
 gi|151421932|dbj|BAF69436.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2]
          Length = 276

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 5/98 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIET G   +  ++IEIGA++    +  +R F+ F+            KL GI  E
Sbjct: 70  FVVVDIETNGSKPEFSQVIEIGAIKFKGNTIIDR-FESFI--YAEDVPEYISKLTGILQE 126

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
            L++ PS   +   F +F  +  A ++AHN +FD  FI
Sbjct: 127 DLENAPSQKEVLLSFKEFLQD--AVFVAHNVRFDYNFI 162


>gi|290991983|ref|XP_002678614.1| predicted protein [Naegleria gruberi]
 gi|284092227|gb|EFC45870.1| predicted protein [Naegleria gruberi]
          Length = 302

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 1/122 (0%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +V DIE T  ++   R+IE+    ++D +  + +F   +  +         ++  IT 
Sbjct: 80  NVVVLDIEGTSTNTSYCRMIEVACARIVDGTSIS-SFTSLVNADIDYIPEPVQEITKITK 138

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P    + S+ ++F + Q +  + HN +FD   I  E  R      +  +  D +
Sbjct: 139 AMIDLSPPPQIVLSQLYNFLSSQPSLVVGHNVRFDASVIYNEFVRYKIINNEVHKPDDFI 198

Query: 128 SI 129
           S 
Sbjct: 199 SH 200


>gi|145631430|ref|ZP_01787200.1| ribonuclease T [Haemophilus influenzae R3021]
 gi|145632574|ref|ZP_01788308.1| ribonuclease T [Haemophilus influenzae 3655]
 gi|145640270|ref|ZP_01795854.1| ribonuclease T [Haemophilus influenzae R3021]
 gi|144982967|gb|EDJ90476.1| ribonuclease T [Haemophilus influenzae R3021]
 gi|144986769|gb|EDJ93321.1| ribonuclease T [Haemophilus influenzae 3655]
 gi|145274856|gb|EDK14718.1| ribonuclease T [Haemophilus influenzae 22.4-21]
          Length = 229

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   +PE+LK +G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +        + Q +  +AHNA FD  F+ A  +R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAERTGVK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + +       +  L   C    I    +  H AL D+   + ++  M+ 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACLAAKIPFDGKQAHSALYDTERTAKLFCYMVN 202

Query: 177 GGSQIN 182
               + 
Sbjct: 203 HLKDLG 208


>gi|91223850|ref|ZP_01259114.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|91191342|gb|EAS77607.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
          Length = 248

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +  D ETTGL+S+ D I+ IG V   +D  + N +    + PN   N    +   
Sbjct: 58  FVSVDFETTGLNSEEDVILTIGLVPFTIDRVQCNGSAHWVVNPNRELNHESVIIHG 113


>gi|320668677|gb|EFX35482.1| ribonuclease T [Escherichia coli O157:H7 str. LSU-61]
          Length = 215

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDITLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L+  C+  G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|257439307|ref|ZP_05615062.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
           A2-165]
 gi|257198182|gb|EEU96466.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
           A2-165]
          Length = 244

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 8/173 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLC-PNGRKNSPEALKLHG 64
           + FD ETTGL++++ +IIE+ A+ +        +   +  VF+  P G +   + ++L G
Sbjct: 15  VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQKIVELTG 74

Query: 65  ITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           ITDE    +  + +   + F +  +      +AHNA+FD+ F    L+R      +  + 
Sbjct: 75  ITDEQLENEGITEAEAAARFTELISGGRVLLVAHNAQFDLLFTAEMLRRHGNGGPEALKA 134

Query: 124 IDTLS--IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D L      +   +  + L +    Y +    ++ H A+ D   L +V   M
Sbjct: 135 ADYLDSLTVYKDRRAYPHKLANAILTYKLEGKVQNSHRAIDDVAALFEVCKAM 187


>gi|153832018|ref|ZP_01984685.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
 gi|148872016|gb|EDL70839.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
          Length = 249

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +  D ETTGL+++ D I+ IG V   L   + + +    + PN   N    +   
Sbjct: 59  FVSVDFETTGLNAEQDAILTIGLVPFTLGRVQCSGSRHWVVNPNRELNEESVVIHG 114


>gi|326791343|ref|YP_004309164.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM
           5427]
 gi|326542107|gb|ADZ83966.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM
           5427]
          Length = 837

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 5/173 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +V D+E+TGL +  D +I+I A+        ++   + L P     S           
Sbjct: 475 NIVVLDVESTGLSTIKDDVIQIAAIRYGKEGVVDQ-LDILLKP---TKSVGESYYVHGFS 530

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L  K       +        Q A  + HN  +D+  I + + R   +P+   ++ DTL
Sbjct: 531 DDLLQKEGMEPKEALKQFVHFIQGAVLVGHNVNYDLQIIKSMMSRYKLEPIGEYQVYDTL 590

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +A + +P   N       +  I       H A+ D    S+V   ++    +
Sbjct: 591 DLAYKVYPKLSNHKLETLSKL-IVTETIPTHNAMQDILATSEVLSHLLKHIEE 642


>gi|260101291|ref|ZP_05751528.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075]
 gi|260084876|gb|EEW68996.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075]
          Length = 929

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 7/169 (4%)

Query: 9   KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    K   II+ G   + +     +T+   + P+ R+     + L GI +
Sbjct: 10  FAVVDLETTGTQREKGHHIIQFGCAIIKNMKVV-KTYSFMINPH-REIPQSVVNLTGIHN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIID 125
           E ++ K  FS    +  +        ++AHN  FD+ F+N EL +   + L       ++
Sbjct: 68  EDVQGKDDFSVYAPKIIEILKG--TVFVAHNVDFDLPFLNYELVQHGYEALTNKAIDTVE 125

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              IA    PS +    +   +      H++   A   + LL  +  K+
Sbjct: 126 LAKIAFPTLPSYKLSDLTAQLKIKHLNPHKADSDAYGTAVLLIKIIHKL 174


>gi|294506958|ref|YP_003571016.1| DNA polymerase III polC-type [Salinibacter ruber M8]
 gi|294343286|emb|CBH24064.1| DNA polymerase III polC-type [Salinibacter ruber M8]
          Length = 258

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 10 IVFDIETTGLDSKNDRIIEIGA---VELLDYSKTNRTFQVFLCPN 51
          + FD+E TG D +  RII+IG    V   D +  + T  V + P 
Sbjct: 18 VFFDLEATGTDPQAARIIQIGMQRFVPSEDGAALDETIDVLVDPE 62


>gi|145634678|ref|ZP_01790387.1| ribonuclease T [Haemophilus influenzae PittAA]
 gi|145268223|gb|EDK08218.1| ribonuclease T [Haemophilus influenzae PittAA]
 gi|309972517|gb|ADO95718.1| Ribonuclease T [Haemophilus influenzae R2846]
          Length = 229

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   +PE+LK +G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +        + Q +  +AHNA FD  F+ A  +R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + +       +  L   C    I    +  H AL D+   + ++  M+ 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACLAAKIPFDGKQAHSALYDTERTAKLFCYMVN 202

Query: 177 GGSQIN 182
               + 
Sbjct: 203 HLKDLG 208


>gi|330811888|ref|YP_004356350.1| exonuclease [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379996|gb|AEA71346.1| Putative exonuclease [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 203

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 7/170 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+    + R  EI  V L      +R +Q  +   G +      +L GI+
Sbjct: 3   RIAVIDFETTGITPSSSCRATEIAVVMLEQGRIVDR-YQSLMN-AGVRVPAFIEQLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--I 124
           +  L+  PS   + +E  +F        +AHNA FD  F + EL RI +  L       +
Sbjct: 61  NAMLRSAPSAEKVMNEVNEFV--GITPLLAHNAAFDQKFWDFELGRIKRTRLQNFACSLL 118

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +           LN+         +HR+   A + ++L + +  ++
Sbjct: 119 LARRLMPAAPNHKLGTLNTFAGLPHTGQAHRAMADAEMAANLTAHLASQL 168


>gi|325508152|gb|ADZ19788.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum EA
           2018]
          Length = 317

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 10/161 (6%)

Query: 1   MIRKNK-----MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI+  K     M+    D ET   + K +    IG V + D     ++    + P   + 
Sbjct: 1   MIKTKKIWRKEMKFTAIDFET--ANEKRNSPCSIGIVVVKDGHVVEKS-HHLIRPKEMRF 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P  + +HGI    ++ +P F  ++ +   +F++     IAHNA FD+  +    +  N 
Sbjct: 58  MPINIGIHGIRPAMVEKEPEFDKVWEKIKHYFDD--TLVIAHNASFDISVLRKSAELYNI 115

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
           +  + + I                 LN++    G    H  
Sbjct: 116 ELPEFNYICTMKLARNFYKGIENAKLNTVNNFLGYEFRHHD 156


>gi|152988293|ref|YP_001347274.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PA7]
 gi|150963451|gb|ABR85476.1| probable nuclease [Pseudomonas aeruginosa PA7]
          Length = 208

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNG 52
          I  D+ETT LD +   I+ IGAV +           ++++ P  
Sbjct: 33 ISLDLETTSLDPRRADILSIGAVLVRRGKLVLGERLELYVEPPP 76


>gi|126661817|ref|ZP_01732816.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
 gi|126625196|gb|EAZ95885.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
          Length = 453

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 82/238 (34%), Gaps = 16/238 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +   +   ++ F   + P  +   P  +KL GI + 
Sbjct: 2   YAIIDIETTGGQFNEEGITEIAIYKFDGHEVVDQ-FISLVNPE-KPIQPFVVKLTGINNA 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  +     +    +    +AHNA FD   +  E +R+  D    +     LS
Sbjct: 60  MLRSAPKFYEVAKRIIE--ITEGCVIVAHNASFDYRILKTEFRRLGYDFKKQTLCTVELS 117

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                   S +          + I    +H A  D+     ++  ++V   +        
Sbjct: 118 KKLIPEQPSYSL---GKLVRALGIPMADRHRANGDALATVKLFKMLLVKDIEKEIVKSFI 174

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT--IQTLGKNAIWDRYISSN 244
           +          + +I      K     I       H++   +  +GK+    + ++ +
Sbjct: 175 KTEIKSGISPKLLDIVESLPSKTGIYYI-------HNEKGDLIYIGKSKNIKKRVNQH 225


>gi|160895546|ref|YP_001561128.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1]
 gi|160361130|gb|ABX32743.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1]
          Length = 211

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+  ++  R  E+  V +      +R FQ  +   G    P   +L GIT+  
Sbjct: 7   VIDFETTGMAPAQGARATEVAIVLIEGGQVVDR-FQSLMR-TGAWIPPFITRLTGITNAM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           +   P    +  +   F         AHNA FD  F  
Sbjct: 65  VAAAPPAEEVMRDAARFVGSAPMV--AHNAAFDSKFWQ 100


>gi|258624472|ref|ZP_05719419.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus
          VM603]
 gi|258583319|gb|EEW08121.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus
          VM603]
          Length = 233

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50
          +  D ETTGL+++ D I+ IG V         N+     + P
Sbjct: 45 VALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQP 86


>gi|325954953|ref|YP_004238613.1| DNA polymerase III subunit alpha [Weeksella virosa DSM 16922]
 gi|323437571|gb|ADX68035.1| DNA polymerase III, alpha subunit [Weeksella virosa DSM 16922]
          Length = 1463

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 71/230 (30%), Gaps = 19/230 (8%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL    +          R I+I      +           + P+G     +
Sbjct: 2   YLIFDTETTGLPKDWNAPITDSDNWPRCIQIAWQLHDELGNLVEHQDYLVKPDGFDIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP- 117
           + ++HGI+     ++        + +     +    +  N  FD+  + AE  R   +  
Sbjct: 62  SERIHGISTALATEQGVPLEEVLDKFQKALAKTKFIVGQNLGFDINIMAAEFYRKGVENK 121

Query: 118 --------LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                          + L +   +    +    +    +   +     H A  D    + 
Sbjct: 122 LDQLPVLDTCTETTAELLKLPGGRGGRYKLPTLTELHEFLFQVPFSEAHNATADVEATAR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            + +++  G       + +E+ F +        I+ +        + ++ 
Sbjct: 182 CFFELIRTGVFTLQDLQKDENYFTRFRTANPTEIASIGLKHTNLKKASEA 231


>gi|254426843|ref|ZP_05040550.1| ribonuclease T [Alcanivorax sp. DG881]
 gi|196193012|gb|EDX87971.1| ribonuclease T [Alcanivorax sp. DG881]
          Length = 228

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRT-FQVFLCPNGRKNSPEALKLH 63
           +V D+ET G +S+ D ++EI AV +      +   + R  F V   P             
Sbjct: 24  VVIDVETGGFNSQTDALLEIAAVLIEMDAQGNLRPSTRIQFHVDPFPGANLEQAALDFTG 83

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAELQRINKD 116
                 L+   S  +     ++             A  + HN+ FD GF+NA   R +  
Sbjct: 84  IDPSNPLRGAVSEETALKGVFEPIRKAVKQHGCSRAVLVGHNSFFDQGFLNAATDRADIK 143

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI  S R  H AL D+   ++++  M+ 
Sbjct: 144 RSPFHPFSSFDTATLAGLVYGQTVLAKACEAAGIRFSQREAHSALYDATRTAELFCSMVN 203

Query: 177 GGSQIN 182
               + 
Sbjct: 204 RFKTLG 209


>gi|148979109|ref|ZP_01815317.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
 gi|145961975|gb|EDK27264.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
          Length = 238

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+   D II IG V   L+     +     L P  +K   E++ +HGIT 
Sbjct: 48  FLALDFETTGLNPSKDGIITIGLVPFTLNRIYLRQARHWTLRP-RQKLEEESVVIHGITH 106

Query: 68  EFLKDKP 74
             + D P
Sbjct: 107 NDIIDAP 113


>gi|323466410|gb|ADX70097.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus H10]
          Length = 927

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 7/169 (4%)

Query: 9   KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    K   II+ G   + +     +T+   + P+ R+     + L GI +
Sbjct: 10  FAVVDLETTGTQREKGHHIIQFGCAIIKNMKVV-KTYSFMINPH-REIPQSVVNLTGIHN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIID 125
           E ++ +  FS    +  +        ++AHN  FD+ F+N EL +   + L       ++
Sbjct: 68  EDVQGEDDFSVYAPKIIEILKG--TVFVAHNVDFDLPFLNYELVQHGYEALTNKAIDTVE 125

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              IA    PS +    +   +      H++   A   + LL  +  K+
Sbjct: 126 LAKIAFPTLPSYKLSDLTAQLKIKHLNPHKADSDAYGTAVLLIKIIHKL 174


>gi|254509159|ref|ZP_05121258.1| ribonuclease T [Vibrio parahaemolyticus 16]
 gi|219547910|gb|EED24936.1| ribonuclease T [Vibrio parahaemolyticus 16]
          Length = 213

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 71/200 (35%), Gaps = 14/200 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTN--RTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV  ++ D        T    + P  G     EAL   G
Sbjct: 14  VVIDVETAGFNAKTDALLEICAVTLKMDDSGDLQPASTIHFHVEPFEGANIEKEALDFIG 73

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           + D F   +              +  +     +   A  +AHNA+FD  F+     R   
Sbjct: 74  LRDPFSPLRGAIPESEALKEIYKLVRKEQKAADCSRAIIVAHNAQFDHSFVMEASDRSKL 133

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   ++  H AL D+   ++++  ++
Sbjct: 134 KRVPFHPFATFDTATLSGLAYGQTVLAKACKAAGMEFDNKEAHSALYDTKKTAELFCGIV 193

Query: 176 VGGSQINFGFKTNEDRFFKE 195
                +      + D     
Sbjct: 194 NKWKALGGWPLIDADAENNN 213


>gi|71064966|ref|YP_263693.1| DNA polymerase III subunit epsilon [Psychrobacter arcticus 273-4]
 gi|71037951|gb|AAZ18259.1| probable DNA polymerase III, epsilon subunit [Psychrobacter
           arcticus 273-4]
          Length = 203

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 1/66 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D E TGL+ K   ++ + A+ +      T     +   P     S   +     T 
Sbjct: 35  WVAIDCEMTGLNPKKHHLLSVAAIHINGDKIDTGNGLHLLCRPPVMPKSDTIVIHGLRTA 94

Query: 68  EFLKDK 73
           +     
Sbjct: 95  DVEHAM 100


>gi|84393001|ref|ZP_00991768.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
 gi|84376355|gb|EAP93236.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
          Length = 238

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+   D II IG V   L+     +     L P  +K   +++ +HGIT 
Sbjct: 48  FLAVDFETTGLNPNKDGIITIGLVPFTLNRIYLRQAKHWTLRPK-QKLEEDSVVIHGITH 106

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEW 94
             + D P  S +  E  +         
Sbjct: 107 NDIIDAPDLSEVLDEILESLAGHIPVV 133


>gi|332534821|ref|ZP_08410645.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035733|gb|EGI72220.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 207

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 56/169 (33%), Gaps = 5/169 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL---HG 64
           R +V D+E TGLD+K   I+ +  V + +        Q  +  + +  +   +       
Sbjct: 24  RYLVIDLELTGLDAKQHEIVSVAWVIIDNQCIKMSKSQHLINKDVKSLAQSPVFHGISDD 83

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
              + L        + + F D     +   +  +  F    +      I    +  +  I
Sbjct: 84  AIAKGLSLNSILMQLSNHFSDCILVFHNAML--DWVFLKIALKNANITIRPKLILDTLHI 141

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +   +        ++DL     R    +     H AL D+   +++ + 
Sbjct: 142 EQKRLLHHSTEIKQDDLTLNACRTRYELPSYHCHHALTDAQATAELLLA 190


>gi|163802823|ref|ZP_02196712.1| ribonuclease T [Vibrio sp. AND4]
 gi|159173363|gb|EDP58186.1| ribonuclease T [Vibrio sp. AND4]
          Length = 214

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 74/195 (37%), Gaps = 14/195 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L            T    + P  G     EAL+ +G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLSMDDTGNLHPASTIHFHIEPFEGANLEKEALEFNG 79

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F   +              +  +     +   A  +AHNA FD+ F+NA  +R   
Sbjct: 80  IRDPFSPLRGAISEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKAAGMEFDNREAHSALYDTQQTAELFCGIV 199

Query: 176 VGGSQINFGFKTNED 190
                +      +E 
Sbjct: 200 NKWKALGGWPLVDEK 214


>gi|152995559|ref|YP_001340394.1| ribonuclease T [Marinomonas sp. MWYL1]
 gi|150836483|gb|ABR70459.1| ribonuclease T [Marinomonas sp. MWYL1]
          Length = 222

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 68/198 (34%), Gaps = 13/198 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELL--DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + K D ++E+ A  + +        + T    + P  G      AL   G
Sbjct: 16  VVIDVETAGFNQKTDALLEMAASILRMDENGDLYIHETLDFLIKPFEGANLEKAALDFTG 75

Query: 65  ITDEFLKDKPSFSSIFSEFW--------DFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I       +    +                   + A  + HNA FD GF+NA ++R +  
Sbjct: 76  IDPFAPGRQDMPETEALNQMFSKVRKELKSVGCKRAILVGHNAAFDHGFLNAAIERADIK 135

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + +       +  L   C+   I  S+   H A  D+   ++++ +M+ 
Sbjct: 136 RNPFHPFSSFDTASLAGLVFGQTVLAKACEAASIPFSNSEAHSAKYDTEKTAELFCEMVN 195

Query: 177 GGSQINFGFKTNEDRFFK 194
              ++        +    
Sbjct: 196 RLKRLGGWPLVENEAEDS 213


>gi|67077901|ref|YP_245521.1| DNA polymerase III fragment [Bacillus cereus E33L]
 gi|66970207|gb|AAY60183.1| possible exonuclease [Bacillus cereus E33L]
          Length = 287

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 11/137 (8%)

Query: 5   NKM-----RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           NKM     + ++ D ETTGL +  D+IIEI  ++L             + P       EA
Sbjct: 122 NKMFINRDQFVILDTETTGL-TLRDQIIEICVIDLTGKIL----LNSLVKP-TINIPAEA 175

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGIT++ + D PS+  I+ E  +    +            +         +      
Sbjct: 176 ASIHGITNKMVHDAPSWIEIYKELCEVTAGKTLLIYNAEFDLGMIESTCIANNVEFKNFK 235

Query: 120 PSRIIDTLSIARRKHPS 136
            + I+   +        
Sbjct: 236 STCIMKMYADYVDSKRW 252


>gi|319939450|ref|ZP_08013810.1| DNA polymerase III [Streptococcus anginosus 1_2_62CV]
 gi|319811436|gb|EFW07731.1| DNA polymerase III [Streptococcus anginosus 1_2_62CV]
          Length = 819

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 83/185 (44%), Gaps = 9/185 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M ++ + +  V D+E T   S N +II++G V + +     +T++  + P+  K      
Sbjct: 1   MTQEKR-KYAVVDLEATSASS-NAKIIQVGIVLIENGQIV-KTYETDVNPH-EKLDSHIC 56

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+TD+ L+  P FS +  E ++   +  A ++AHN KFD   +        +     
Sbjct: 57  QLTGLTDKRLRRAPDFSQVAREIYELIED--AIFVAHNVKFDANLLA--EALFWEGFELV 112

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  +DT+ +A+   P+             + I  +  H AL D+   + +++K+     +
Sbjct: 113 TPRVDTVELAQVFFPTFEKYNL-GILCEQLDIPLKHAHTALADASATATLFLKIQEKIQK 171

Query: 181 INFGF 185
           +    
Sbjct: 172 LPKEL 176


>gi|145636543|ref|ZP_01792211.1| ribonuclease T [Haemophilus influenzae PittHH]
 gi|145270368|gb|EDK10303.1| ribonuclease T [Haemophilus influenzae PittHH]
          Length = 229

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   +PE+LK +G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +        + Q +  +AHNA FD  F+ A  +R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMIRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + +       +  L   C    I    +  H AL D+   + ++  M+ 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACLAAKIPFDGKQAHSALYDTERTAKLFCYMVN 202

Query: 177 GGSQIN 182
               + 
Sbjct: 203 HLKDLG 208


>gi|315612858|ref|ZP_07887769.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sanguinis ATCC 49296]
 gi|315314968|gb|EFU63009.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sanguinis ATCC 49296]
          Length = 830

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 8/188 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+     R +V D+E T   SK  +II++G V + +    ++ +   + P+         
Sbjct: 1   MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIIDQ-YATDVNPH-EPLDSHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+TD+ L   P FS +  + ++   +    ++AHN +FD   +   L     +   P
Sbjct: 58  ELTGLTDQRLAAAPEFSQVAGKIFELVKD--GIFVAHNVQFDANLLAEFLFFEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                            + +L  LC+  GI + H   H AL D+   +++ + M     +
Sbjct: 116 RVDT-VELAQVLYPQFEKYNLGILCQELGIELEHA--HTALSDAQATAELLLYMRQKLFE 172

Query: 181 INFGFKTN 188
           +  G   +
Sbjct: 173 LPKGLLES 180


>gi|293365088|ref|ZP_06611805.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus oralis ATCC 35037]
 gi|291316538|gb|EFE56974.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus oralis ATCC 35037]
          Length = 830

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 8/188 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+     R +V D+E T   SK  +II++G V + +    ++ +   + P+         
Sbjct: 1   MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIIDQ-YATDVNPH-EPLDSHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+TD+ L   P FS +  + ++   +    ++AHN +FD   +   L     +   P
Sbjct: 58  ELTGLTDQRLAVAPEFSQVAGKIFELVKD--GIFVAHNVQFDANLLAEFLFFEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                            + +L  LC+  GI + H   H AL D+   +++ + M     +
Sbjct: 116 RVDT-VELAQVLYPQFEKYNLGILCQELGIELEHA--HTALSDAQATAELLLYMRQKLFE 172

Query: 181 INFGFKTN 188
           +  G   +
Sbjct: 173 LPKGLLES 180


>gi|218708963|ref|YP_002416584.1| ribonuclease T [Vibrio splendidus LGP32]
 gi|218321982|emb|CAV17988.1| Ribonuclease T (RNase T) [Vibrio splendidus LGP32]
          Length = 241

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 14/195 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A+ L            T    + P  G      AL  +G
Sbjct: 47  VVIDVETAGFNAETDALLEICAITLRMDENGDLHPASTLHFHIEPFEGANIEQAALDFNG 106

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F   +              +  +     +   A  +AHNA FD+ F+NA  +R   
Sbjct: 107 IKDPFSPLRGAVSEQEALKEIYKLVRKEQKASDCSRAIMVAHNATFDLNFVNAASERCKL 166

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         + A       +  L   C+  G+   ++  H AL D+   ++++  ++
Sbjct: 167 KRVPFHPFATFDTAALSGLAYGQTVLAKACRTAGMEFDNKEAHSALYDTQKTTELFCGIV 226

Query: 176 VGGSQINFGFKTNED 190
                +      +E+
Sbjct: 227 NKWKALGGWPLVDEE 241


>gi|104774090|ref|YP_619070.1| putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103423171|emb|CAI97964.1| Putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 261

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 10/165 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTG      +II+IGA+++ D     + F  ++ P  + N      L GI++   
Sbjct: 10  VFDLETTGK-----KIIQIGALKVRDDQTVAK-FSTYVNPLEKINDY-VSHLTGISNYQT 62

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P    +  +F DF  +        +                        ++   S  
Sbjct: 63  DAAPLIDEVMPDFLDFVGDDTLVG---HNILSFDCNVLADNGYPVANPKLDTLLLANSYK 119

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R   +       L         + + H A+ D    + VY K++
Sbjct: 120 KRGLFADPIPNVRLSTLKEYYGININFHIAISDCITNNIVYQKLL 164


>gi|329903276|ref|ZP_08273408.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
          IMCC9480]
 gi|327548440|gb|EGF33116.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 216

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 14 IETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           ETTG+     DR+ E+ A+ ++     +R F   +  + R +   +           + 
Sbjct: 4  FETTGMSPALGDRVTEVAALRIVGGVVVDR-FVSLINCDVRISPFISQLTGITQAMVDRA 62

Query: 73 KP 74
           P
Sbjct: 63 PP 64


>gi|315290558|gb|EFU49932.1| ribonuclease T [Escherichia coli MS 153-1]
          Length = 215

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPSDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L+  C+  G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|258620167|ref|ZP_05715206.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus
          VM573]
 gi|262165546|ref|ZP_06033283.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
 gi|258587525|gb|EEW12235.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus
          VM573]
 gi|262025262|gb|EEY43930.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
          Length = 233

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50
          +  D ETTGL+++ D I+ IG V         N+     + P
Sbjct: 45 VALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQP 86


>gi|27366371|ref|NP_761899.1| ribonuclease T [Vibrio vulnificus CMCP6]
 gi|320156882|ref|YP_004189261.1| ribonuclease T [Vibrio vulnificus MO6-24/O]
 gi|29611837|sp|Q8D882|RNT_VIBVU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|27362572|gb|AAO11426.1| ribonuclease T [Vibrio vulnificus CMCP6]
 gi|319932194|gb|ADV87058.1| ribonuclease T [Vibrio vulnificus MO6-24/O]
          Length = 217

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 14/197 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L            T    + P +G     EAL+ +G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFDGANLEKEALEFNG 79

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F   +              +        +   A  +AHNA FD+ F+NA  +R   
Sbjct: 80  IRDPFSPLRGAVTEQEALKEIYKLIRREQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         +         +  L   CK  G+   +R  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKTAGMEFDNREAHSALYDTEKTAELFCGIV 199

Query: 176 VGGSQINFGFKTNEDRF 192
                +       ++  
Sbjct: 200 NKWKALGGWPLIEDENE 216


>gi|194333877|ref|YP_002015737.1| Exonuclease RNase T and DNA polymerase III [Prosthecochloris
           aestuarii DSM 271]
 gi|194311695|gb|ACF46090.1| Exonuclease RNase T and DNA polymerase III [Prosthecochloris
           aestuarii DSM 271]
          Length = 189

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 20/180 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP--------EALKLHG 64
           D+ETTG +     II+IGA+  +D               G + SP        E  +L  
Sbjct: 11  DVETTGTNPAKHGIIQIGAIIEVDGVVVEECNLKCAPHEGAEISPDALAISGTERSELES 70

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP------- 117
                         +      +  E       +N  FD+ FI A  +             
Sbjct: 71  RMTSHEAYTQFRHFLSRHIEQYDREDKCYPAGYNIHFDLNFIQAWFRHHGDKYGIGSFIN 130

Query: 118 --LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +     +  +    R+       L ++C+ +GI +     H A+ D     ++ +K++
Sbjct: 131 WRMLDPLPLLFIKDFTRQITLPDYRLETVCRHFGIALHA---HDAMSDIRATRELLLKLL 187


>gi|332703188|ref|ZP_08423276.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553337|gb|EGJ50381.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 246

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D E TG+D + D I+ IGAV +     +    +   + P+          +H IT   
Sbjct: 51  VLDTELTGMDHRRDEIVSIGAVRIRGMAIQPGANWYAVVRPSC--LPKACTLIHRITPSE 108

Query: 70  LKDKPSFSSIFSEFWDFF 87
           ++  P  S +  EF D+ 
Sbjct: 109 VEAAPELSDVLPEFADYL 126


>gi|325125846|gb|ADY85176.1| DNA polymerase III, epsilon subunit [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 286

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTG      +II+IGA+++ D     + F  ++ P  + N      L GI++   
Sbjct: 35  VFDLETTGK-----KIIQIGALKVRDDQTVAK-FSTYVNPLEKINDY-VSHLTGISNYQT 87

Query: 71  KDKPSFSSIFSEFWDFF 87
              P    +  +F DF 
Sbjct: 88  DAAPLIDEVMPDFLDFV 104


>gi|291044082|ref|ZP_06569798.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
 gi|291012545|gb|EFE04534.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
          Length = 264

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +          +AHN++FD  F+    +         S  + +
Sbjct: 85  DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++RR +P              + I    +H A+ D   L D     +    
Sbjct: 141 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 192


>gi|268686367|ref|ZP_06153229.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035]
 gi|268626651|gb|EEZ59051.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035]
          Length = 264

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +          +AHN++FD  F+    +         S  + +
Sbjct: 85  DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++RR +P              + I    +H A+ D   L D     +    
Sbjct: 141 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 192


>gi|268684113|ref|ZP_06150975.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679]
 gi|268624397|gb|EEZ56797.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679]
          Length = 264

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +          +AHN++FD  F+    +         S  + +
Sbjct: 85  DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++RR +P              + I    +H A+ D   L D     +    
Sbjct: 141 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 192


>gi|268603417|ref|ZP_06137584.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1]
 gi|268587548|gb|EEZ52224.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1]
          Length = 264

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +          +AHN++FD  F+    +         S  + +
Sbjct: 85  DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++RR +P              + I    +H A+ D   L D     +    
Sbjct: 141 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 192


>gi|260440770|ref|ZP_05794586.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI2]
          Length = 255

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +          +AHN++FD  F+    +         S  + +
Sbjct: 76  DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++RR +P              + I    +H A+ D   L D     +    
Sbjct: 132 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 183


>gi|240127974|ref|ZP_04740635.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 255

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +          +AHN++FD  F+    +         S  + +
Sbjct: 76  DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++RR +P              + I    +H A+ D   L D     +    
Sbjct: 132 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 183


>gi|240125521|ref|ZP_04738407.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           SK-92-679]
          Length = 255

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +          +AHN++FD  F+    +         S  + +
Sbjct: 76  DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++RR +P              + I    +H A+ D   L D     +    
Sbjct: 132 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 183


>gi|240117716|ref|ZP_04731778.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID1]
          Length = 255

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +          +AHN++FD  F+    +         S  + +
Sbjct: 76  DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++RR +P              + I    +H A+ D   L D     +    
Sbjct: 132 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 183


>gi|240016771|ref|ZP_04723311.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA6140]
 gi|240112673|ref|ZP_04727163.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae MS11]
          Length = 255

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +          +AHN++FD  F+    +         S  + +
Sbjct: 76  DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++RR +P              + I    +H A+ D   L D     +    
Sbjct: 132 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 183


>gi|239998744|ref|ZP_04718668.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae 35/02]
 gi|240014337|ref|ZP_04721250.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI18]
 gi|240080968|ref|ZP_04725511.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA19]
 gi|240121900|ref|ZP_04734862.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID24-1]
 gi|240123269|ref|ZP_04736225.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID332]
 gi|268594593|ref|ZP_06128760.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268597081|ref|ZP_06131248.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
 gi|268547982|gb|EEZ43400.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268550869|gb|EEZ45888.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
          Length = 255

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +          +AHN++FD  F+    +         S  + +
Sbjct: 76  DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++RR +P              + I    +H A+ D   L D     +    
Sbjct: 132 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 183


>gi|254493534|ref|ZP_05106705.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291]
 gi|268681897|ref|ZP_06148759.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332]
 gi|226512574|gb|EEH61919.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291]
 gi|268622181|gb|EEZ54581.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332]
 gi|317164039|gb|ADV07580.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 264

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +          +AHN++FD  F+    +         S  + +
Sbjct: 85  DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++RR +P              + I    +H A+ D   L D     +    
Sbjct: 141 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 192


>gi|194098334|ref|YP_002001392.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           NCCP11945]
 gi|268598740|ref|ZP_06132907.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11]
 gi|193933624|gb|ACF29448.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           NCCP11945]
 gi|268582871|gb|EEZ47547.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11]
          Length = 264

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +          +AHN++FD  F+    +         S  + +
Sbjct: 85  DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++RR +P              + I    +H A+ D   L D     +    
Sbjct: 141 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 192


>gi|157375459|ref|YP_001474059.1| DNA polymerase III subunit epsilon [Shewanella sediminis HAW-EB3]
 gi|157317833|gb|ABV36931.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis
           HAW-EB3]
          Length = 238

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +  D ETTGLD+  + II IG V   L      +    F+ P  +      +   
Sbjct: 48  FVALDFETTGLDANQNSIISIGLVPFTLQRIACRQAKHWFVTPEDKLQEDSIIIHG 103


>gi|116514157|ref|YP_813063.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
          [Lactobacillus delbrueckii subsp. bulgaricus ATCC
          BAA-365]
 gi|116093472|gb|ABJ58625.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
          [Lactobacillus delbrueckii subsp. bulgaricus ATCC
          BAA-365]
          Length = 261

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
          VFD+ETTG      +II+IGA+++ D     + F  ++ P  + N      L GI++   
Sbjct: 10 VFDLETTGK-----KIIQIGALKVRDDQTVAK-FSTYVNPLEKINDY-VSHLTGISNYQT 62

Query: 71 KDKPSFSSIFSEFWDFF 87
             P    +  +F DF 
Sbjct: 63 DAAPLIDEVMPDFLDFV 79


>gi|226355514|ref|YP_002785254.1| ATP-dependent DNA helicase [Deinococcus deserti VCD115]
 gi|226317504|gb|ACO45500.1| putative ATP-dependent DNA helicase [Deinococcus deserti VCD115]
          Length = 1683

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 68/217 (31%), Gaps = 14/217 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN--GRKNSPEALKLHGIT 66
            ++ D ETT +D    R++E+ AV + D      T Q+ +      R+ +          
Sbjct: 9   YVILDTETTSVDRAEARLLEVAAVRVEDGRIC-DTLQLLVSGERIPREVAELTGIRQEEL 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D   +  P        F              +          +  +     +  + ++  
Sbjct: 68  DRDGQPLPDVLKQVLAFMGDLPVVGHNAQGFDVPLLKRLCREQSLKFQVPFVFDTLLLAP 127

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L+ A    P     L  L  R+     H   H  L D    S +   M+     +     
Sbjct: 128 LAFAAVVPPVEGYGLEGLHARF-CGDVHDDAHRTLADCAATSRLLAYMVERLRALP---- 182

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
             ED+        VP ++L  + +     ITK EL+ 
Sbjct: 183 --EDQKALISALPVPELALAFQPRS----ITKAELER 213


>gi|93005267|ref|YP_579704.1| DNA polymerase III subunit epsilon [Psychrobacter cryohalolentis
           K5]
 gi|92392945|gb|ABE74220.1| Exonuclease [Psychrobacter cryohalolentis K5]
          Length = 203

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 53/169 (31%), Gaps = 4/169 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D E TGL+ K   ++ + A+ +      T     +   P       + + +HG+  
Sbjct: 35  WVAIDCEMTGLNPKKHHLLSVAAIHINGDKIDTGNGLHLLCRPPVMPE-GDTIVIHGLRT 93

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINKDPLDPSRIID 125
             ++   S+  +      F + +            F    +   +     + +   R + 
Sbjct: 94  ADVEHAMSYDEMLGLLLPFISNRPLVGFCPQIDVGFLNPLVKHYMGTHLPNEIIDIRPLY 153

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  +  R    S    +         I     H A  D+ + +  ++ M
Sbjct: 154 SRRMMGRSQGLSSQAQHLNSILAHYNIPELGTHDAYNDAIMTAMAFLHM 202


>gi|94499932|ref|ZP_01306467.1| exonuclease [Oceanobacter sp. RED65]
 gi|94427790|gb|EAT12765.1| exonuclease [Oceanobacter sp. RED65]
          Length = 224

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 46/167 (27%), Gaps = 1/167 (0%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTGL  K++ ++ IG V +        +    ++           +      
Sbjct: 42  RYLVIDTETTGLSPKDNTLLSIGWVAIESGKVKLNSARHRYIKVKEGVGQSATIHQIRDC 101

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +       + +          +         +  F   +           PL  +  I+ 
Sbjct: 102 ELQDGVTINQAMAEVLTAMKDSVLVFHHAPMDMAFLNKYCRQLYNAPLLMPLVDTLNIEK 161

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                               R    +S    H AL D+   +++ + 
Sbjct: 162 SRHMHNDQARKNGFFRLAHCRQRYGLSAHQGHNALTDAIATAELLLA 208


>gi|319653481|ref|ZP_08007580.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2]
 gi|317394680|gb|EFV75419.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2]
          Length = 202

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 47/177 (26%), Gaps = 5/177 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K KM  +  D+ETTGL   +D IIE+        + T     +       +      
Sbjct: 1   MRNKEKMGLL-LDVETTGLGPNSDEIIELALKLFSYRADTGEILDIKDKAAFLREPISKS 59

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
             +  +  F      + ++  + +D    +       +A        +  +         
Sbjct: 60  AKNNYSRAFRVHGIPYEAVSGKCFDDIKIKK---YFFHADSVFAHNASFDRSFLYRMYPE 116

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                      R  P              +     ++         ++   ++++  
Sbjct: 117 DINELKWYCTMRSVPWKEYGFTDSKLLTLLQSHQIAESQTHRAMDDIT-YLLELLKK 172


>gi|262171676|ref|ZP_06039354.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
 gi|261892752|gb|EEY38738.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
          Length = 233

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50
          +  D ETTGL+++ D I+ IG V         N+     + P
Sbjct: 45 VALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQP 86


>gi|326562712|gb|EGE13014.1| ribonuclease T [Moraxella catarrhalis 103P14B1]
 gi|326568721|gb|EGE18791.1| ribonuclease T [Moraxella catarrhalis BC8]
 gi|326574186|gb|EGE24134.1| ribonuclease T [Moraxella catarrhalis 101P30B1]
 gi|326575625|gb|EGE25549.1| ribonuclease T [Moraxella catarrhalis O35E]
          Length = 232

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 72/211 (34%), Gaps = 16/211 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-----------NGRK 54
           +V D+ET G ++  D ++EI  V +                 + P               
Sbjct: 22  VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            +P++     I+++                   + +    + HNA FD+GF+NA + R N
Sbjct: 82  INPDSPFRKAISEDEKTALRRIFKALKALKKEHSCRQCILVGHNAHFDLGFLNAAIARTN 141

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNS-LCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                P      L        +  + + +  C   G+   ++  H AL D+   ++++  
Sbjct: 142 SKNHSPFHTFSVLDTVSFAALTYGHTVLAKTCMIAGLEFDNQHAHSALYDAQKTAELFCH 201

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204
           ++   + ++                  P+++
Sbjct: 202 IVNQNTLLSTNHANLTQNDTPTNSHQTPSLT 232


>gi|82543982|ref|YP_407929.1| ribonuclease T [Shigella boydii Sb227]
 gi|194434706|ref|ZP_03066959.1| ribonuclease T [Shigella dysenteriae 1012]
 gi|123559690|sp|Q321A7|RNT_SHIBS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|81245393|gb|ABB66101.1| RNase T [Shigella boydii Sb227]
 gi|194417044|gb|EDX33160.1| ribonuclease T [Shigella dysenteriae 1012]
 gi|320186326|gb|EFW61062.1| Ribonuclease T [Shigella flexneri CDC 796-83]
 gi|332093985|gb|EGI99038.1| ribonuclease T [Shigella dysenteriae 155-74]
 gi|332096070|gb|EGJ01075.1| ribonuclease T [Shigella boydii 3594-74]
          Length = 215

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMIAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L+  C+  G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|159903267|ref|YP_001550611.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9211]
 gi|159888443|gb|ABX08657.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9211]
          Length = 245

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 63/212 (29%), Gaps = 6/212 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ETTGLDS  D+ +EIGA+    + KT                  + +        +
Sbjct: 25  ILDTETTGLDSDKDQCLEIGAILF--HVKTRSVLAQ--NSFLLPVDENSAESINRIPAEI 80

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                   +  ++++   +     +AHN  FD  +  +        P   S    +    
Sbjct: 81  TRIFQPWEMGMKYFEELVDCAEAVVAHNVAFDKQWFGSPPLPKLIKPWICSMEDISWPSH 140

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--KMMVGGSQINFGFKTN 188
            +          +L     +  +HR+    +  + +         ++V G +     +  
Sbjct: 141 LQLRSRPSVRDLALAYEIPVWSAHRALTDCIYLAEVFRRCDQLETLLVHGLEPRMLMRAQ 200

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
                +   K                R++  E
Sbjct: 201 VSYEQRHLAKNAGFRWNDPVHGAWTRRLSARE 232


>gi|88705709|ref|ZP_01103419.1| Ribonuclease T [Congregibacter litoralis KT71]
 gi|88700222|gb|EAQ97331.1| Ribonuclease T [Congregibacter litoralis KT71]
          Length = 210

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 67/198 (33%), Gaps = 16/198 (8%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLD--YSKTNRTFQVFLCP-NG 52
           M  K++ R    ++ D+ET G  S  D I+EI A  V + D      + T    + P  G
Sbjct: 1   MSMKSRFRGFLPVIVDMETGGFSSSTDAILEIAATVVRMDDTGQIAVHETHSFNVAPFEG 60

Query: 53  RKNSPEALKLHGITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
                 AL   GI       +             I            A  + HNA FD G
Sbjct: 61  ANIEQSALDFTGIDPWHPFREALAEKEALGELFQIIRREIRDQECTRAILVGHNAHFDAG 120

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           F+NA ++R               +         +  L   C   GI   +   H A  D+
Sbjct: 121 FLNAAVERCEIKRNPFHPFSHFDTATLSGLAYGQTVLAKSCYEAGIPFDNEQAHSAAYDA 180

Query: 165 HLLSDVYIKMMVGGSQIN 182
              ++++  ++    ++ 
Sbjct: 181 ERTAELFCGIVNTWQKLG 198


>gi|253800757|ref|YP_003033758.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 1435]
 gi|289555976|ref|ZP_06445186.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 605]
 gi|297636389|ref|ZP_06954169.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN
           4207]
 gi|297733383|ref|ZP_06962501.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN
           R506]
 gi|313660714|ref|ZP_07817594.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN
           V2475]
 gi|253322260|gb|ACT26863.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 1435]
 gi|289440608|gb|EFD23101.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 605]
 gi|328460485|gb|AEB05908.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 4207]
          Length = 329

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 70/201 (34%), Gaps = 7/201 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +P F+ I  E  D         +AHN  FD  F+ AE +    +      +       
Sbjct: 75  DGQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R +       L +L   +   +  +  H A  D  +L+ +    +    +++     +  
Sbjct: 133 RLQLGVDNLRLETLAAHW--RVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPVHPV 190

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
              +     V +  L      
Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211


>gi|322419698|ref|YP_004198921.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M18]
 gi|320126085|gb|ADW13645.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M18]
          Length = 314

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44
          I  D ETTGL+ K D++IE+G V       +   +
Sbjct: 57 ICLDTETTGLNHKEDKVIELGIVAFEFDPLSGEIY 91


>gi|149374321|ref|ZP_01892095.1| ribonuclease T [Marinobacter algicola DG893]
 gi|149361024|gb|EDM49474.1| ribonuclease T [Marinobacter algicola DG893]
          Length = 211

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNR--TFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++EI AV   + D     R  T    + P  G      AL   G
Sbjct: 11  VVVDVETGGFNPEKDALLEIAAVILTMDDDGWLKRAETHVQQIDPFEGANLEQSALDFTG 70

Query: 65  ITDEFLKD--------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I     +                  +     + + A  + HNA FD  F+ A   R +  
Sbjct: 71  IDPWNPEREAVPEREGMSEIFGPIRKAVKAHDCKRAVLVGHNATFDHNFVFAAALRSDIR 130

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L   CK  GI  S++  H A  D+   +D++  ++ 
Sbjct: 131 RNPFHPFSTFDTATLAGLAYGHTVLAQACKLAGIPFSNKDAHSAAYDAEKTADLFCGIVN 190

Query: 177 GGSQIN 182
              +I 
Sbjct: 191 RWREIG 196


>gi|218528419|ref|YP_002419235.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           chloromethanicum CM4]
 gi|218520722|gb|ACK81307.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           chloromethanicum CM4]
          Length = 297

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 72/211 (34%), Gaps = 8/211 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ET   + + D    +G   +       R     + P   + SP  +++HGI 
Sbjct: 1   MKVVAIDFET--ANERRDSACAVGLAWIEGGRVARRE-SRLIRPPQLRFSPGNIRVHGIL 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P+F  + +EF    +      +AHNA FD+G + A L    +   D +     
Sbjct: 58  PADVRDAPTFPEVIAEFLPDLSG--GLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
               R     + + L    K  G        H A  D+   +++ +  +      +    
Sbjct: 116 QIARRVFPDPAGHGL---AKVAGRLGIRFEHHDAGEDAFACAEIALAALRETGAADIADL 172

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
                       T P   + +       R +
Sbjct: 173 ARGLGLTPIRALTTPRRDMTRSTSAKALRAS 203


>gi|331701662|ref|YP_004398621.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri
           NRRL B-30929]
 gi|329129005|gb|AEB73558.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri
           NRRL B-30929]
          Length = 177

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 54/160 (33%), Gaps = 5/160 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   ++K      I    + D   T   F   + P     S   + +HGI 
Sbjct: 1   MNFVAMDFET--ANAKRASACSIALAIVRDNQIT-NEFYSLINPE-MDFSWRNINVHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + D P+F              N   IAHNA FD   +   L+R    P     +   
Sbjct: 57  ERDVVDAPTF-PEVWRHIQPLFSANKLVIAHNASFDNSVLKRTLERYEVQPPHYLTLDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            +  +       + LN+LC +  I + H         +  
Sbjct: 116 RTSKQFYPTLENHKLNTLCDKLNIVLKHHHNALDDSVACA 155


>gi|326565468|gb|EGE15639.1| ribonuclease T [Moraxella catarrhalis 12P80B1]
 gi|326572590|gb|EGE22579.1| ribonuclease T [Moraxella catarrhalis CO72]
          Length = 232

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 71/211 (33%), Gaps = 16/211 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-----------NGRK 54
           +V D+ET G ++  D ++EI  V +                 + P               
Sbjct: 22  VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            +P++     I+++                     +    + HNA FD+GF+NA + R N
Sbjct: 82  INPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLNAAIARTN 141

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNS-LCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                P      L        +  + + +  C   G+   ++  H AL D+   ++++  
Sbjct: 142 SKNHSPFHTFSVLDTVSFAALTYGHTVLAKTCMIAGLEFDNQHAHSALYDAQKTAELFCH 201

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204
           ++   + ++                  P+++
Sbjct: 202 IVNQNTLLSTNHANLTQNDTPTNSHQTPSLT 232


>gi|224535480|ref|ZP_03676019.1| hypothetical protein BACCELL_00343 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522946|gb|EEF92051.1| hypothetical protein BACCELL_00343 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 243

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 8/186 (4%)

Query: 15  ETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDK 73
           ETTG     DRI+EI  +++  + ++  +T +  + P        A  +HGI D+ + D 
Sbjct: 2   ETTGTSINVDRIVEICYLKVHPNGNEEAKTLR--INPEMH-IPEGASAVHGIYDKDVADC 58

Query: 74  PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK 133
           P+F  +     +     +      N           L+      L   + +D   I  + 
Sbjct: 59  PTFKEVARTIANDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDLSRRKFVDVQVIFHK- 117

Query: 134 HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFF 193
                    S   ++    +    H A  D+    +V +  +   S++        D   
Sbjct: 118 ---LEQRTLSAAYKFYCGKNLEDAHTAAADTQATYEVLMAQLDRYSELQNDIAFLADYSS 174

Query: 194 KEEKKT 199
             +   
Sbjct: 175 FNKNVD 180


>gi|254282911|ref|ZP_04957879.1| ribonuclease T [gamma proteobacterium NOR51-B]
 gi|219679114|gb|EED35463.1| ribonuclease T [gamma proteobacterium NOR51-B]
          Length = 214

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 65/186 (34%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++  D ++EI A  +    D   T  +T    + P  G    P AL+  G
Sbjct: 19  VVIDVETGGFNADTDAVLEIAATLVGMNDDGILTPKQTLCHNVEPFEGANLEPSALEFTG 78

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  E                 S   +         A  + HNA FD GFINA   R +  
Sbjct: 79  IDPESPLRDAVPEAIAFGEIFSAIRKEIREQGCNRAILVGHNAHFDAGFINAASMRADIK 138

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI   +   H A  D+   ++++  ++ 
Sbjct: 139 RNPFHPFSHFDTATLAGLAYGQTVLAKACRTAGIDFDNNEAHSAAYDAAKTAELFCNIVN 198

Query: 177 GGSQIN 182
               + 
Sbjct: 199 RWQALG 204


>gi|330829256|ref|YP_004392208.1| ribonuclease T [Aeromonas veronii B565]
 gi|328804392|gb|AEB49591.1| Ribonuclease T [Aeromonas veronii B565]
          Length = 225

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A  +++ +      ++ F   + P  G      AL+  G
Sbjct: 18  VVIDVETAGFNAKTDALLEIAAYTLKMDEQGWLVPDQVFHFHVEPFEGANLEKAALEFTG 77

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +     +   A  +AHNA FD GF+ A  +R    
Sbjct: 78  IDPYNPLRGAVSEKEALTEIFKGIRKGMKEQDCGRAIIVAHNATFDHGFVMAAAERAGLK 137

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C+   I   ++  H AL D+   ++++  ++ 
Sbjct: 138 RNPFHPFATFDTAALSGLALGQTVLAKACQSARIPFDNKEAHSALYDTERTTELFCHIVN 197

Query: 177 GGSQIN 182
               + 
Sbjct: 198 RWKSMG 203


>gi|126668711|ref|ZP_01739661.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
 gi|126626811|gb|EAZ97458.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
          Length = 294

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 20/25 (80%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELL 35
          + D+ETTGL + ND+IIE+G V++ 
Sbjct: 51 ILDLETTGLSAANDKIIELGLVKVR 75


>gi|119474667|ref|ZP_01615020.1| putative exonuclease [marine gamma proteobacterium HTCC2143]
 gi|119450870|gb|EAW32103.1| putative exonuclease [marine gamma proteobacterium HTCC2143]
          Length = 255

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 70/205 (34%), Gaps = 12/205 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGL  +  ++IEI  ++       N      + P+ +  S  A ++HGI    
Sbjct: 43  VILDTETTGLS-ETAQLIEICILDFEGNILLNER----VKPSVK-VSKGAREVHGIKARD 96

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LK   S+  ++ ++ +         +A+NAKFD   I    +  N            L+ 
Sbjct: 97  LKSCRSWPDVYRDYVE--VTAGKNIVAYNAKFDRRIITQTCRAFNLTMKKRKWYCLMLAF 154

Query: 130 ARR----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +      ++   +    S          +   H A  D      V  + +    +++   
Sbjct: 155 SELVGRTRYGDYKWHKLSTAAWVFDVPPNDDAHSAYGDCETTLAVAKEFLQFDPELSLPL 214

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
           +  +D                KR  
Sbjct: 215 EDYKDIDSLYLLLDEKERQKSKRAN 239


>gi|330989528|gb|EGH87631.1| ribonuclease T [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 225

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV +      +     T+   + P  G    P AL+  G
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFEGANVEPAALEFTG 92

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +       + A  + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    R  H A  D+   ++++  ++ 
Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212

Query: 177 GGSQIN 182
              ++ 
Sbjct: 213 RWKEMG 218


>gi|254818513|ref|ZP_05223514.1| DNA polymerase III subunit epsilon [Mycobacterium intracellulare
          ATCC 13950]
          Length = 330

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
          V D+ET+G      RII +  + L    +  ++    L P      P    +HG+T   L
Sbjct: 19 VIDVETSGFRPGQARIISLAVLGLDADGEVEQSVVSLLNPG---VDPGPTHVHGLTAAML 75

Query: 71 KDKPSFSSIFSEFWDFF 87
          +D+P F+ I  +  D  
Sbjct: 76 EDQPQFADIAPDVIDVL 92


>gi|256819216|ref|YP_003140495.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM
           7271]
 gi|256580799|gb|ACU91934.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM
           7271]
          Length = 1485

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 67/200 (33%), Gaps = 19/200 (9%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R ++I      ++          + P+G     +
Sbjct: 2   YLIFDTETTGLPRRWDAPLTDSDNWPRAVQIAWQLHDEWGALIEHQDFLIKPDGFDVPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----- 113
           A K+HGI+ +  + +    +   + ++    +    +  N  FD+  + AE  R      
Sbjct: 62  AEKVHGISTQLAEAQGLPIAEVFKAFNEALSKAQYVVGQNIGFDINIMGAEFYRYGVESP 121

Query: 114 --NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSD 169
                 +D                  R  L +L + +           H A  D    + 
Sbjct: 122 LTQMPVIDTCTEATANLCQIAGGKGGRYKLPTLTELHSFLFGVPFAEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNE 189
            + +++  G     G  +++
Sbjct: 182 CFFELIRRGEGFQEGTFSSD 201


>gi|153832837|ref|ZP_01985504.1| gp41 [Vibrio harveyi HY01]
 gi|148870971|gb|EDL69861.1| gp41 [Vibrio harveyi HY01]
          Length = 207

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 58/189 (30%), Gaps = 21/189 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M + +    I+ D ETTGL S    I+E  A+               + P       +A 
Sbjct: 1   MKKLSTENAIIIDTETTGLGSD-AEIVEFTAICADSGKVIVNE---LVKPTC-SIPADAT 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI----------------AHNAKFDVG 104
            +HGIT+E +KD P F  +FS  +          I                  NA +   
Sbjct: 56  AIHGITNEDVKDAPDFHLVFSNHFLPLLNGRPIIIYNSDFDTRLIIQSLDKHCNAAYVQS 115

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
             +   +                             L++ C +  + +S  + H AL D 
Sbjct: 116 VHDLFFKFCIPQCAMLWYAEFFGVWNEHHEDYKWQSLSNACAQQSVDVSDLTAHRALADC 175

Query: 165 HLLSDVYIK 173
            +   +   
Sbjct: 176 EMTRRLIHA 184


>gi|304413849|ref|ZP_07395266.1| ribonuclease T [Candidatus Regiella insecticola LSR1]
 gi|304283569|gb|EFL91964.1| ribonuclease T [Candidatus Regiella insecticola LSR1]
          Length = 210

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 70/187 (37%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET+G D++ + ++EI AV  ++ D        T    + P  G     ++L  +G
Sbjct: 20  VVIDVETSGFDAQTNALLEIAAVTLQMNDGGWLHPAETLHFHVAPFEGAILEQKSLSFNG 79

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +          K   +      +         A  +AHNA FD  F+ A  +R    
Sbjct: 80  INLDNPLRGAISEHKALQTIFETVKKRMKGEGCTRAVVVAHNATFDHRFVMAAAERTGLI 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +P     T   A          + +  C   GI       H AL D+   + ++ +++
Sbjct: 140 KHNPFHSFVTFDTAALSALVLGQTVLAKACLEAGIDFESSQAHSALYDTKQTAKLFCELV 199

Query: 176 VGGSQIN 182
               ++ 
Sbjct: 200 NRWKRLG 206


>gi|270290674|ref|ZP_06196898.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4]
 gi|270280734|gb|EFA26568.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4]
          Length = 178

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 56/165 (33%), Gaps = 5/165 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET            I    + +   T+      + P  +      +++HGI 
Sbjct: 1   MNFVAIDFET--AAPARASACSIALTVVQNDQITDE-LYSLINPETK-FHWRNVQVHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++D P+F          F   +   +AHNA FD   +   L+R   + L    +   
Sbjct: 57  EADVQDAPTF-PELWPILQPFFTPDQLVVAHNANFDNSVLKKTLERYELNRLPYQTLDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +          + LN+LC   GI + H         +     +Y
Sbjct: 116 RTSRSFFPNYPNHKLNTLCDNLGIELEHHHNALDDSLACANILLY 160


>gi|296114717|ref|ZP_06833368.1| DNA polymerase III subunit epsilon [Gluconacetobacter hansenii
          ATCC 23769]
 gi|295978751|gb|EFG85478.1| DNA polymerase III subunit epsilon [Gluconacetobacter hansenii
          ATCC 23769]
          Length = 298

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSK-TNRTFQVFLCP 50
          R I+ D+ETTGLD + D IIE+  V                F+    P
Sbjct: 40 RAILVDVETTGLDCEKDEIIELAMVPFFYTHFGEIVGIGAPFEGLRKP 87


>gi|210614957|ref|ZP_03290405.1| hypothetical protein CLONEX_02619 [Clostridium nexile DSM 1787]
 gi|210150481|gb|EEA81490.1| hypothetical protein CLONEX_02619 [Clostridium nexile DSM 1787]
          Length = 190

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 8/177 (4%)

Query: 10  IVFDIETTGLDSK----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           IV+D+ETTGL        D I+ +  ++L         F+ +  P   ++  +A  ++GI
Sbjct: 17  IVYDLETTGLYPFSPELGDEILSMCIMDLQGSVL----FEHYFKPEHTESWSKAAAINGI 72

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E ++++  FS    E    F+  +     +   FD  F+ A    I         +  
Sbjct: 73  TPEKVENEKPFSFYRDEVQRIFDAADILITYNGIHFDDSFLEAAGIEIPDVMQFDVMLKF 132

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
              +            + L             H A  D       Y +MM   S+ +
Sbjct: 133 AWLMHEWDDYHKSWRWHKLINCAAYYNYEFPAHDATEDVRATLHCYTEMMFQKSKRS 189


>gi|307704598|ref|ZP_07641501.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK597]
 gi|307621843|gb|EFO00877.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK597]
          Length = 816

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 84/185 (45%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D    +R +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIVDR-YTTDVNPH-EPLDAHIQE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMAQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|170016856|ref|YP_001727775.1| DNA polymerase III, epsilon subunit [Leuconostoc citreum KM20]
 gi|169803713|gb|ACA82331.1| DNA polymerase III, epsilon subunit [Leuconostoc citreum KM20]
          Length = 177

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 54/165 (32%), Gaps = 5/165 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET   + +    + I    + D    +  F   + P     S     +HGIT
Sbjct: 1   MNFTALDFET--ANHEKHSAVSIALAVVRDNQVVDE-FYSLIKPET-YFSARNTAIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +   P F     +       ++   +AHNA FD G +   L   +        +   
Sbjct: 57  AADVAQAPKF-PEIWDMIAPLFTEDKLVVAHNAAFDNGILKGTLDYYDIAEPHYMLLDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            S  +       + LN++ +  GIT+ H         +     +Y
Sbjct: 116 RSSRQLFPDFKNHKLNTVAQNLGITLDHHHNALDDAVAAANILIY 160


>gi|149278873|ref|ZP_01885008.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
 gi|149230492|gb|EDM35876.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
          Length = 1477

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 72/230 (31%), Gaps = 19/230 (8%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL         D     R I+I      ++ K        + P G     +
Sbjct: 2   YLIFDTETTGLPRNWNAPITDTDNWPRCIQIAWQLHDEFGKLVEHQDYLVKPEGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A ++HGI+ E  +++    +   E ++    +    +  N  FDV  +  E  R+  D  
Sbjct: 62  AERIHGISTELAEEQGISLAEVVEKFNEALSKARFVVGQNIGFDVNIMGCEFHRLGVDSP 121

Query: 119 DPSRIIDTLSIARRKHP---------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             S  +                      +    +   +Y   +     H A  D    + 
Sbjct: 122 MSSMPVLDTCTEVTAELLKLPGGRGGKFKLPNLTELHQYLFGVPFAEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +++++          + + + F    +     I  +          + E
Sbjct: 182 CFLQLIKMEVFSVEQLQCDTNYFRVFREHNPEVIERIGLSHVNLKSASDE 231


>gi|269964031|ref|ZP_06178337.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831250|gb|EEZ85403.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 249

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +  D ETTGL+++ D I+ IG V   L   + + +    + PN   N    +   
Sbjct: 59  FVSVDFETTGLNAEEDAILTIGLVPFTLGRVQCSGSRHWVVNPNRELNEESVVIHG 114


>gi|301167502|emb|CBW27085.1| putative exonuclease [Bacteriovorax marinus SJ]
          Length = 963

 Score = 51.1 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 85/215 (39%), Gaps = 15/215 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V DIETTG+D   D+II++G ++    +   R +   +  +G+  S    KL GI  
Sbjct: 7   RWAVIDIETTGIDPSYDQIIDVGYLQFEGTTLV-RKYSSLVQYDGK-LSQFIKKLTGIDS 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L + PS+  +  E  D         IAHNA+F+  F++    RI+      S      
Sbjct: 65  KMLINAPSWQVVSPEVMDV---FGHHLIAHNAEFERSFLSDHFARIDDGSGRESYEDSLY 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            ++      S   L +        I+   +H    DS  L  V   +++  + +    + 
Sbjct: 122 FLSLLFPKMSSLKLENFI--CDWKIAEHEEHRGFQDSLDLLKV---LLIAVATVRRDVEL 176

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
           N       +K  + +    K        ++ EE+ 
Sbjct: 177 NATLGALFKKYNLTDYWYYKFFS-----LSDEEIA 206


>gi|229119030|ref|ZP_04248372.1| exonuclease [Bacillus cereus Rock1-3]
 gi|228664421|gb|EEL19920.1| exonuclease [Bacillus cereus Rock1-3]
          Length = 240

 Score = 51.1 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 11/144 (7%)

Query: 5   NKM-----RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           NKM     + ++ D ETTGL +  D+IIEI  ++L             + P       EA
Sbjct: 75  NKMFINRDQFVILDTETTGL-TLRDQIIEICVIDLTGKIL----LNSLVKP-TINIPAEA 128

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGIT+E + D PS+  I+ +  +    +            +         +      
Sbjct: 129 ASIHGITNEMVHDAPSWIEIYIKLCEVTAGKTLLIYNAEFDLGMIESTCIANNVEFKNFK 188

Query: 120 PSRIIDTLSIARRKHPSSRNDLNS 143
            + I+   +              +
Sbjct: 189 STCIMKMYADYVDSKRWISLSDAT 212


>gi|169347247|ref|ZP_02866186.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
 gi|169296643|gb|EDS78774.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
          Length = 302

 Score = 51.1 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 68/182 (37%), Gaps = 8/182 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG   + +       +   + P   +  P  + +HGI 
Sbjct: 1   MDFVAIDFET--ANEKRNSACSIGLTVVKNNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++++ +F+ I+ E  D+ +      IAHNA FD+  +   L   +    D       
Sbjct: 58  PEDVENERTFNEIWEEIKDYIDG--NLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +           + L ++ +  G      S H A  D+   +++ + +       +    
Sbjct: 116 VMAKNYYKSLPNHKLGTVSEALGFEF---SHHHAGEDARACANILLNICKDLDIESIEEL 172

Query: 187 TN 188
           ++
Sbjct: 173 SD 174


>gi|168183921|ref|ZP_02618585.1| exonuclease family protein [Clostridium botulinum Bf]
 gi|237795808|ref|YP_002863360.1| exonuclease family protein [Clostridium botulinum Ba4 str. 657]
 gi|182672939|gb|EDT84900.1| exonuclease family protein [Clostridium botulinum Bf]
 gi|229261869|gb|ACQ52902.1| exonuclease family protein [Clostridium botulinum Ba4 str. 657]
          Length = 253

 Score = 51.1 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 68/207 (32%), Gaps = 15/207 (7%)

Query: 7   MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNS 56
           M  I+FD+E    +   +          II+IGA++L +   T  TF   + P      +
Sbjct: 1   MNYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSDLN 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAELQRIN 114
           P    L  +T + L    +F  ++ +F  F N+              ++       +   
Sbjct: 58  PFVKNLTNLTMDSLNKANTFREVYKDFLKFLNKDKNILCIWGMTDMKELFRNIVYYELDT 117

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +        +   +     +P S N   S          +   H A  D+   ++V+ K+
Sbjct: 118 ESIPKEYINVQAYTGKYLNYPKSINVGLSNAVELFHITKNNDFHNAFNDAFYTAEVFKKI 177

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP 201
                +      TN    ++ +     
Sbjct: 178 YSEKIKTKIYKPTNNSTTYRNKNTKTK 204


>gi|163839979|ref|YP_001624384.1| DNA polymerase III subunit epsilon [Renibacterium salmoninarum ATCC
           33209]
 gi|162953455|gb|ABY22970.1| DNA polymerase III, epsilon chain [Renibacterium salmoninarum ATCC
           33209]
          Length = 228

 Score = 51.1 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 59/202 (29%), Gaps = 3/202 (1%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ETTG D +  R++    V +   +    + +    P         L     T    
Sbjct: 11  AFDVETTGRDPRQARLVSASIVLVDANNDVVESHEWLADPGVEIPEAVTLIHGISTARAR 70

Query: 71  KDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +     ++ +E               +A NA +D   + AE  RI         +ID  
Sbjct: 71  AEGAPIGAVVTEVAQVLRSYFAAGTPVMAFNAPYDFTVLAAECARIGVSAPTAFPVIDPF 130

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            + ++     R     +       I     H +  D+     +   +     +++   + 
Sbjct: 131 VLDKQVDGFRRGKRTLVAICEHYNIPLIDAHTSAADALATIKLAEALARRFPELSIPAEE 190

Query: 188 NEDRFFKEEKKTVPNISLLKRD 209
              +      +   +     R 
Sbjct: 191 LHAQQIVWAAEQAASFQEYLRR 212


>gi|326568596|gb|EGE18667.1| ribonuclease T [Moraxella catarrhalis BC7]
          Length = 232

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 71/211 (33%), Gaps = 16/211 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-----------NGRK 54
           +V D+ET G ++  D ++EI  V +                 + P               
Sbjct: 22  VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            +P++     I+++                     +    + HNA FD+GF+NA + R N
Sbjct: 82  INPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLNAAIARTN 141

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNS-LCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                P      L        +  + + +  C   GI   ++  H AL D+   ++++  
Sbjct: 142 SKNHSPFHTFSVLDTVSFAALTYGHTVLAKTCMIAGIEFDNQHAHSALYDAQKTAELFCH 201

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204
           ++   + ++                  P+++
Sbjct: 202 IVNQNTLLSTNHANLTQNDTPTSPHQTPSLT 232


>gi|331266715|ref|YP_004326345.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5]
 gi|326683387|emb|CBZ01005.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5]
          Length = 830

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 8/188 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+     R +V D+E T   SK  +II++G V + +    ++ +   + P+         
Sbjct: 1   MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGDIIDQ-YATDVNPH-EPLDSHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+TD+ L   P FS +  + ++   +    ++AHN +FD   +   L     +   P
Sbjct: 58  ELTGLTDQRLAAAPEFSQVAGKIFELVKD--GIFVAHNVQFDANLLAEFLFFEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                            + +L  LC+  GI + H   H AL D+   +++ + M     +
Sbjct: 116 RVDT-VELAQVLYPQFEKYNLGILCQELGIELEHA--HTALSDAQATAELLLYMRQKLFE 172

Query: 181 INFGFKTN 188
           +  G   +
Sbjct: 173 LPKGLLES 180


>gi|315641337|ref|ZP_07896413.1| exonuclease [Enterococcus italicus DSM 15952]
 gi|315482910|gb|EFU73430.1| exonuclease [Enterococcus italicus DSM 15952]
          Length = 177

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 7/167 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + +      +  V + D       +   + P         +++HGI 
Sbjct: 1   MNFIAMDFET--ANHQRHSACSLALVMVRDSKIVGE-YYSLIQPETSFF-WRNIQIHGIK 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +K  P F  ++     +FN  +   IAHNA FD G +   L   N +      +   
Sbjct: 57  PQDVKTAPKFPEVWESIAQYFNPYSLI-IAHNAPFDNGVLAGCLDYYNLEQPHYLTLDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +  +       + LN++C      I   + H AL DS   +++ + 
Sbjct: 116 RTSRKFYQNLPNHRLNTVCGYL--DIPLLNHHDALEDSRACAEILLA 160


>gi|306825581|ref|ZP_07458920.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431942|gb|EFM34919.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 830

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 8/188 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+     R +V D+E T   SK  +II++G V + +       +   + P+         
Sbjct: 1   MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEII-NQYATDVNPH-EPLDSHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+TD  L   P FS +  + ++   +    ++AHN +FD   +   L     +   P
Sbjct: 58  ELTGLTDRRLAAAPEFSQVAGKIFELVKD--GIFVAHNVQFDANLLAEFLFFEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                            + +L  LC+  GI + H   H AL D+   +++ + M     +
Sbjct: 116 RVDT-VELAQVLYPQFEKYNLGILCQELGIELEHA--HTALSDAQATAELLLYMRQKLFE 172

Query: 181 INFGFKTN 188
           +  G   +
Sbjct: 173 LPKGLLES 180


>gi|259046854|ref|ZP_05737255.1| DnaQ family exonuclease/DinG family helicase [Granulicatella
           adiacens ATCC 49175]
 gi|259036477|gb|EEW37732.1| DnaQ family exonuclease/DinG family helicase [Granulicatella
           adiacens ATCC 49175]
          Length = 875

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 7/176 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +  V D+ETTG   +  DRI + G   + D+        + + P  +    E   L G+T
Sbjct: 4   KYAVIDLETTGPKYEQGDRIFQFGCTLITDHKIV-EHITLNINPE-QSIPFEIQLLTGVT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  P F  +    ++         +AHN  FD  FI   L+      L+   I   
Sbjct: 62  NADVEKAPYFDEVAMNIYNLLEG--RTLVAHNVGFDGPFIITALKEALGIELEVPFIDTV 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
                    +    L+ L     I       H A  D+   + +++ +       +
Sbjct: 120 QLAQICYPSAISYRLSDLTNMLKIPH--TQVHTAGSDARATAQLFLILQEKIRSFS 173


>gi|91216470|ref|ZP_01253436.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC
           700755]
 gi|91185264|gb|EAS71641.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC
           700755]
          Length = 454

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 73/212 (34%), Gaps = 7/212 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIE+TG     + I EI   +       ++ F   + P  +  S   + L GI +E
Sbjct: 2   YAILDIESTGGKYNEEGITEIAIYKFDGNEIVDQ-FISLINPERKIQS-FVVGLTGINNE 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  I     +    +    +AHNAKFD   +   L+      L   + + T+ 
Sbjct: 60  MLHQAPKFYEIAKRIIE--ITEGCTIVAHNAKFDYRMLK--LEFDRLGYLYERKTLCTVK 115

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           ++++  P   +          + I    +H A  D+     ++  ++   +         
Sbjct: 116 LSKKLLPDFESYSL-GKLVKKLGIPITDRHRASGDALATVKLFKLLLEKDTDKEIISSHL 174

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           +        K +  +     +       + +E
Sbjct: 175 KLNAVSSIDKKLIRLIDDLPNAVGVYYFSNKE 206


>gi|332637276|ref|ZP_08416139.1| DNA-directed DNA polymerase III subunit epsilon [Weissella cibaria
           KACC 11862]
          Length = 177

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 7/163 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET    ++    + +  V + D    +  F   + P          K+HGIT
Sbjct: 1   MNFVAMDFET--ASAQRHSAVSMALVVVRDNILVDE-FYTLIKPES-YFDARNTKIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124
           +  + D P F     E    F   N   IAHNA FD G +   L               +
Sbjct: 57  EADVVDAPKF-PEVWEQIKQFYTANQLVIAHNAPFDNGVLRETLGHYGISAPHYLSLDTV 115

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            T      + P+ + +  +   +  +   H +    +  + +L
Sbjct: 116 RTSRKLYPQLPNHKLNTVADALQIDLKHHHNALDDTVAAARIL 158


>gi|114707008|ref|ZP_01439907.1| exodeoxyribonuclease X [Fulvimarina pelagi HTCC2506]
 gi|114537558|gb|EAU40683.1| exodeoxyribonuclease X [Fulvimarina pelagi HTCC2506]
          Length = 266

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF---QVFLCPNGRKNSPEALKLHGITD 67
           V D ET GL  + D +IEIG+V+L     T   F   Q F  P G   S  A ++H ITD
Sbjct: 25  VIDTETAGLRLEEDAVIEIGSVDLD--LVTGAIFNPMQTFCDPGGAVISDGARRVHQITD 82

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           E L   P FS     F              +     G      +
Sbjct: 83  EMLVGAPPFSDAVKPFNTETYAAQRADFDRSRLRLTGRWLCTHK 126


>gi|46371957|gb|AAS90610.1| conserved hypothetical protein [uncultured soil bacterium]
          Length = 195

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 53/175 (30%), Gaps = 8/175 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGL    D +++IG ++    +         + P  R       ++HG+T+E
Sbjct: 26  FVVLDTETTGLGP-TDEVVQIGIIDSKGRTV----LNTMVRP-TRPVPSVVTRIHGLTNE 79

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +   FS ++               A+N  FD   +                    + 
Sbjct: 80  KLAEASPFSDLYVSLSSILAGVTVI--AYNMDFDWRMLVQSAGLYGLPAFRTGDRQCAMK 137

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
              + H        +             K   +     LSD  + + +      F
Sbjct: 138 AYAQGHGMFDLKRRTYAYHKLGEACRHQKIPVVQAHDALSDARMTLALVRKMAEF 192


>gi|86136890|ref|ZP_01055468.1| hypothetical protein MED193_14487 [Roseobacter sp. MED193]
 gi|85826214|gb|EAQ46411.1| hypothetical protein MED193_14487 [Roseobacter sp. MED193]
          Length = 202

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 12/191 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R I  D+ET   DS +  I +IG   V   ++    R+F  ++ P  +  +P   +LHGI
Sbjct: 16  RFIALDVETASRDSAS--ICQIGIACVCHDNHI---RSFTTYVNPE-QSFAPFNTELHGI 69

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             + +   P F   ++         +   +  ++ FD   ++A  +       D S    
Sbjct: 70  DAQTVATAPRFPEAWTMLKPLLELHH---LVQHSSFDSRAVSAACRAYRMPNADLSWSDS 126

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                +       N  + L             H A  D+   + V + +       +F  
Sbjct: 127 VKIARKAWPEFKGNGGHGLANLKQELGLSFQHHDAGEDARAAAQVVL-LAENRLGQSFDL 185

Query: 186 KTNEDRFFKEE 196
            +   R  +  
Sbjct: 186 ISGTTRKAQFN 196


>gi|297156451|gb|ADI06163.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
          BCW-1]
          Length = 254

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 1/84 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
          FD+ETTG D    RI+    VE+       R  +    P               T+    
Sbjct: 11 FDLETTGTDPGEARIVTAAVVEVRGGEPVGRR-EWLADPGVTIPDDAVAVHGITTEWAAA 69

Query: 72 DKPSFSSIFSEFWDFFNEQNAEWI 95
          +      +  E  D          
Sbjct: 70 EGRPSREVADEIADVLVAHWQAGA 93


>gi|110802120|ref|YP_698713.1| DNA polymerase III subunit epsilon [Clostridium perfringens SM101]
 gi|110682621|gb|ABG85991.1| exonuclease family protein [Clostridium perfringens SM101]
          Length = 302

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 68/182 (37%), Gaps = 8/182 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG   + D       +   + P   +  P  + +HGI 
Sbjct: 1   MDFVAIDFET--ANEKRNSACSIGLTVVKDNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++++ +F+ I+ E  D+ +      IAHNA FD+  +   L   +    D       
Sbjct: 58  PEDVENERTFNEIWKEIKDYIDG--NLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +           + L ++ +  G      S H A  D+   +++ + +       +    
Sbjct: 116 VMAKNYYKSLPNHKLGTVSEALGFEF---SHHHAGEDARACANILLNICKDLDIESIEEL 172

Query: 187 TN 188
           ++
Sbjct: 173 SD 174


>gi|189465280|ref|ZP_03014065.1| hypothetical protein BACINT_01626 [Bacteroides intestinalis DSM
           17393]
 gi|189437554|gb|EDV06539.1| hypothetical protein BACINT_01626 [Bacteroides intestinalis DSM
           17393]
          Length = 164

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 5/159 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
                D ET   + +   +  +G V + D    +  +   + P     S    ++HG+T 
Sbjct: 3   NFAAIDFET--ANEQRTSVCSVGVVIVRDGEIVDN-YYSLIRPEPEYYSYWNTRVHGLTL 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
               + P F  ++ E            +AHN  FD   + A  +    D  D        
Sbjct: 60  ADTAEAPVFPVVWQEIAPLIEG--LPLVAHNKGFDESCLKAVFKTYCLDYPDYEFHCTLS 117

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           +  RR        L+++    G  +       A  ++  
Sbjct: 118 TARRRIKGLPSYQLHTVAAYVGYELEQHHHALADAEACA 156


>gi|260583570|ref|ZP_05851318.1| DnaQ family exonuclease/DinG family helicase [Granulicatella
           elegans ATCC 700633]
 gi|260158196|gb|EEW93264.1| DnaQ family exonuclease/DinG family helicase [Granulicatella
           elegans ATCC 700633]
          Length = 873

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 9/178 (5%)

Query: 7   MR--KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           M+    V D+ETTG    +  RI + G   +       +   +++ P       E  +L 
Sbjct: 1   MKTSYAVVDLETTGPKFEEGGRIFQFGCSIIEQGEIVTQV-DLYINPET-TIPYEIQQLT 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G+  + +K  P F  + S  +     +     AHN  FD  ++    + +         +
Sbjct: 59  GVDKKEVKQAPYFDEVASTIFQLLEGKTFV--AHNISFDYSYLVESFRELAGIEWSAPCV 116

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                            L  L +   I    +  H A  D++  + +++  +    Q+
Sbjct: 117 DTVQLAQICYPTIESYRLQDLTQLLEIPH--QQIHSAGSDAYATAQLFLNCLEELEQL 172


>gi|296113547|ref|YP_003627485.1| ribonuclease T [Moraxella catarrhalis RH4]
 gi|295921241|gb|ADG61592.1| ribonuclease T [Moraxella catarrhalis RH4]
 gi|326559550|gb|EGE09964.1| ribonuclease T [Moraxella catarrhalis 7169]
 gi|326564652|gb|EGE14870.1| ribonuclease T [Moraxella catarrhalis 46P47B1]
 gi|326567767|gb|EGE17873.1| ribonuclease T [Moraxella catarrhalis BC1]
          Length = 232

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 71/211 (33%), Gaps = 16/211 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-----------NGRK 54
           +V D+ET G ++  D ++EI  V +                 + P               
Sbjct: 22  VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            +P++     I+++                     +    + HNA FD+GF+NA + R N
Sbjct: 82  INPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLNAAIARTN 141

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNS-LCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                P      L        +  + + +  C   G+   ++  H AL D+   ++++  
Sbjct: 142 SKNHSPFHTFSVLDTVSFAALTYGHTVLAKTCMIAGLEFDNQHAHSALYDAQKTAELFCH 201

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204
           ++   + ++                  P+++
Sbjct: 202 IVNQNTLLSTNHANLTQNDTPTSPHQTPSLT 232


>gi|188026358|ref|ZP_02961799.2| hypothetical protein PROSTU_03865 [Providencia stuartii ATCC
          25827]
 gi|188020096|gb|EDU58136.1| hypothetical protein PROSTU_03865 [Providencia stuartii ATCC
          25827]
          Length = 181

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M++KN+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MMQKNENNLIWIDLEMTGLDPERDRIIEIA 30


>gi|332534582|ref|ZP_08410417.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036002|gb|EGI72481.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 236

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+S+ND I+ +G V    +      +    + P  R    E++ +HGIT 
Sbjct: 47  FVAMDFETTGLNSQNDDIVSVGLVPFNLERIYCKHSRHWVVQP-RRNLHEESILIHGITH 105

Query: 68  EFLKDKPSFSSIFSEFWDFF 87
             + D P  + I     +  
Sbjct: 106 SEVDDAPDLNQIIEPLLEAL 125


>gi|226314204|ref|YP_002774100.1| hypothetical protein BBR47_46190 [Brevibacillus brevis NBRC 100599]
 gi|226097154|dbj|BAH45596.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 239

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 10/131 (7%)

Query: 7   MRKIVFDIETTGLDSKND---RIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+ IVFD+ETT L  + D    IIEIGA +++   +  +   TFQ +  P   +   E  
Sbjct: 1   MQIIVFDLETT-LTYQRDKIPEIIEIGAAKVVPGKNGVEV-DTFQRYTFPAIERRISERT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +         ++ P+F      F +F      +   +   +        ++   +  LD 
Sbjct: 59  R--KFIGLDKENMPTFIPFRRAFAEFLKWIGNDSEYYLCTWGQDDKRLMIEHCARFGLDF 116

Query: 121 SRIIDTLSIAR 131
           + + +   I  
Sbjct: 117 NWMRNYNDIQP 127


>gi|153003684|ref|YP_001378009.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
          Fw109-5]
 gi|152027257|gb|ABS25025.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
          Fw109-5]
          Length = 200

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKLHGITDE 68
            D+ET GLD K+D I+ +G V +     +   ++   + P+ R+   P++++ H +   
Sbjct: 15 ALDLETGGLDPKSDPILAVGMVPIRGGAIRLAESYASLVRPDVREGIRPDSMRAHHLVPR 74

Query: 69 FLKDKPSFSSIFSEFWDFFNE 89
           + + P   ++  +      E
Sbjct: 75 DVAEAPPLETVLDQIDARIRE 95


>gi|320007769|gb|ADW02619.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
          flavogriseus ATCC 33331]
          Length = 241

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 7  MRKI-----VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
          M  I      FD+ETTG D + DRI+    V L      +      L P 
Sbjct: 1  MSWISGPLLAFDLETTGTDVETDRIVTAAVVRLEADGSVSAELTWLLDPG 50


>gi|170739695|ref|YP_001768350.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
 gi|168193969|gb|ACA15916.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 222

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 59/175 (33%), Gaps = 10/175 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +  D+ETTGL ++ DR++  GAV L        S       +   P    +       
Sbjct: 21  RLLAVDVETTGLGAE-DRVVSFGAVLLDTATLLGGSPVLACHHLIFDPGRPSHPRAEAVH 79

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                      P  +    +            +AHNA FD+GF+  E +   +       
Sbjct: 80  GYDDWLLRHQDP--ARGHLDAVAALLAGADLVVAHNAAFDLGFLAREFRAAGRPDPARPT 137

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                +  RR  P S        +         ++HGAL D+ L   VY+ +   
Sbjct: 138 YCTMEAYRRRGEPGSSALDAVCRRVK--LARAGARHGALEDAWLALRVYLWLQGC 190


>gi|255535519|ref|YP_003095890.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium
           3519-10]
 gi|255341715|gb|ACU07828.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium
           3519-10]
          Length = 1567

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 60/227 (26%), Gaps = 18/227 (7%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL    +          R+++I                  + P+G      
Sbjct: 18  YLIFDTETTGLPKNYNAPLTDSDNWPRMVQIAWQLHDRDGNLLENQDYIIKPDGYDIPFN 77

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A ++HGI+ +    +          +    ++      HN  FD     AE  R + D +
Sbjct: 78  ASRIHGISTKMAHAEGRDLREVLIEFGEVLKKAEVVAGHNIDFDYKIAGAEYHRQSLDNI 137

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCK--------RYGITISHRSKHGALLDSHLLSDV 170
                          +       N   K                   H A  D +  + +
Sbjct: 138 LEKIPSADTMELGTDYCKLGGGKNGRYKSPKLEELYTTLFNERFDEAHNAAADVNATAQI 197

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
           + +MM      +   +  E    +  +                   +
Sbjct: 198 FFEMMRLRIIPSEKLRITEPELDEFIRSHPNPFRPFGIIIRRQVAAS 244


>gi|290580136|ref|YP_003484528.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025]
 gi|254997035|dbj|BAH87636.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025]
          Length = 300

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
            +V DIET GLD   + IIEIGAV++         F   + 
Sbjct: 131 YVVIDIETDGLDENENSIIEIGAVKIDPSQL--EEFNYLVK 169


>gi|300214810|gb|ADJ79226.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius CECT 5713]
          Length = 177

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 5/175 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K      +    + +       F   + P+    S   +++HGIT
Sbjct: 1   MNFVAIDFET--ANPKRYSACSLALTVVKNN-LIADQFYSLIKPDT-DFSWRNIQVHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ +++ PSF  ++    +F    N   +AHNA FD   +   L+  +        +   
Sbjct: 57  EKQVQNAPSFPELWPHIQNF-FTPNNLIVAHNASFDSSVLLRTLEHYDITLPHYQLLDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +  +       + L+++C    I + H         +     +Y   + G  Q+
Sbjct: 116 RTSKKFFKDFENHKLDTICNNLNIDLKHHHNALFDSTACAEILLYQANLFGEDQL 170


>gi|226939937|ref|YP_002795010.1| DNA polymerase III subunit epsilon [Laribacter hongkongensis
          HLHK9]
 gi|226714863|gb|ACO74001.1| Probable DNA polymerase III [Laribacter hongkongensis HLHK9]
          Length = 202

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 9  KIV-FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
          ++V  D ETT L+ +   ++ IGAV +       + +  + + P         +   
Sbjct: 28 EVVSLDCETTSLNVREAELLSIGAVRIRRGRILASESLYLLVRPEHLPAPGSVVVHG 84


>gi|212636083|ref|YP_002312608.1| DNA polymerase III subunit epsilon [Shewanella piezotolerans WP3]
 gi|212557567|gb|ACJ30021.1| Exonuclease [Shewanella piezotolerans WP3]
          Length = 238

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLH 63
            +  D ETTGLD+  + II IG V         R     F+ P  +      +   
Sbjct: 48  FVALDFETTGLDANENSIISIGLVPFTLRRIACRQAKHWFITPEDKLKEDSIIIHG 103


>gi|172040446|ref|YP_001800160.1| hypothetical protein cur_0766 [Corynebacterium urealyticum DSM
          7109]
 gi|171851750|emb|CAQ04726.1| hypothetical protein cu0766 [Corynebacterium urealyticum DSM
          7109]
          Length = 239

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK 39
            D+ETTGLD K D I+ IG V +     
Sbjct: 45 AVDVETTGLDPKKDLILSIGWVPMTGGRI 73


>gi|291295679|ref|YP_003507077.1| Exonuclease RNase T and DNA polymerase III [Meiothermus ruber DSM
           1279]
 gi|290470638|gb|ADD28057.1| Exonuclease RNase T and DNA polymerase III [Meiothermus ruber DSM
           1279]
          Length = 200

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 53/180 (29%), Gaps = 8/180 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCP-NGRKNSPEALKLHGITDE 68
             D+ET+GL+  +D+I+ +G V +          +   + P   +  S E ++ H I   
Sbjct: 18  ALDLETSGLEP-SDQILSVGMVPIRGGVIEFGAHYYSLVRPVRPQALSVEGIQAHHILPS 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P  + +  E      +        +        + +                 L+
Sbjct: 77  ELEAAPPLAQVLDEMEQRIGQDVLILHFSSIDLSFLRQSYKTLGRPWPKPLVVDTAVLLA 136

Query: 129 IARRKHPSSRNDLNSLCKRYGITI-----SHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
               +               G            +H AL D+   +++++ +         
Sbjct: 137 RLNERKRWLEPHSQPYPGALGAARATFGLPGHLEHHALWDALATAELFLVLRHRLQAHTL 196


>gi|117620471|ref|YP_857153.1| ribonuclease T [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561878|gb|ABK38826.1| ribonuclease T [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 240

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 73/202 (36%), Gaps = 13/202 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A  +++ +      ++ F   + P  G      AL+  G
Sbjct: 39  VVIDVETAGFNARTDALLEIAAYTLKMDEQGWLVPDQIFHFHVEPFEGANLEKAALEFTG 98

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +     +   A  +AHNA FD GF+ A  +R    
Sbjct: 99  IDPFNPLRGAVSEKEALTEIFKGIRKGMKEQDCGRAIIVAHNATFDHGFVMAAAERAGLK 158

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C+   I   ++  H AL D+   ++++  ++ 
Sbjct: 159 RNPFHPFATFDTAALSGLALGQTVLAKACQSARIPFDNKEAHSALYDTERTTELFCHIVN 218

Query: 177 GGSQINFGFKTNEDRFFKEEKK 198
               +      + D    +  +
Sbjct: 219 RWKSLGGWPPAHPDEVADDASE 240


>gi|322376366|ref|ZP_08050859.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. M334]
 gi|321282173|gb|EFX59180.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. M334]
          Length = 816

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D    +R +   + P+         K
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIVDR-YTTDVNPH-EPLDAHIKK 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD  L   P FS +  + +D    +N  ++AHN +FD   +   L     +  +P 
Sbjct: 58  LTGLTDRRLAQAPDFSQVARKIFDLV--ENGIFVAHNVQFDANLLAENLFFEGYELRNPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                L+         +  L  LC+  GI + H   H AL D+   +++ + +    +Q+
Sbjct: 116 VDTVELTQVFFPE-LEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMAQL 172

Query: 182 NFGF 185
               
Sbjct: 173 PKEL 176


>gi|291542505|emb|CBL15615.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Ruminococcus bromii L2-63]
          Length = 296

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 58/175 (33%), Gaps = 10/175 (5%)

Query: 7   MRKIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEA 59
           M  ++ D+E  G     L    + IIEIGAV+L D      TF + + P    +  S   
Sbjct: 1   MSYVILDLEWNGSYSKVLHKFVNEIIEIGAVKLDDELNVCDTFTMLVAPKIGKKLCSKVK 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKD 116
                  +E   +  SF    S F DF  +           +A  +         R+   
Sbjct: 61  QLTKITNEELKDEGVSFIRAISLFSDFLGDGVLMTWSDSDLHALIENYSYYTGRTRLPFL 120

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               +              S +  L +  +  G+  S   +H AL D +L  +  
Sbjct: 121 SRYCNLQSYCEDCLDLHDSSCQLGLGACAEMAGVDFSEDDQHRALADVYLTLECM 175


>gi|41057226|ref|NP_958252.1| hypothetical protein VWBp10 [Streptomyces phage VWB]
 gi|39656049|gb|AAR29700.1| hypothetical protein [Streptomyces phage VWB]
          Length = 263

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
          M  K +M  + FD+ETTG+D + DRI+   A++L        T +    P G +    A 
Sbjct: 1  MWHKARM--VAFDLETTGVDVEQDRIVTAAAIDLGAEKPL--TLEWLADP-GIEIPEGAT 55

Query: 61 KLHGITDEFLKDK 73
           +HGIT E  ++ 
Sbjct: 56 AVHGITTEHAREH 68


>gi|229060993|ref|ZP_04198347.1| exonuclease [Bacillus cereus AH603]
 gi|228718362|gb|EEL69996.1| exonuclease [Bacillus cereus AH603]
          Length = 221

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 11/144 (7%)

Query: 5   NKM-----RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           NKM     + ++ D ETTGL +  D+IIEI  ++L             + P       EA
Sbjct: 56  NKMFINRDQFVILDTETTGL-TLRDQIIEISVIDLAGKIL----LDSLVKPTTN-IPAEA 109

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGIT+E + D PS+++I+ E  +    +            +         +      
Sbjct: 110 ASIHGITNEMVHDAPSWTAIYKELREVTVGKTLLIYNAEFDLGMIENTCIANNVEFKNFK 169

Query: 120 PSRIIDTLSIARRKHPSSRNDLNS 143
            + I++                 +
Sbjct: 170 STCIMEMYVDYVDSKRWISLSDAT 193


>gi|294632065|ref|ZP_06710625.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
 gi|292835398|gb|EFF93747.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
          Length = 240

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
          FD+ETTG D +  RI+    +E+ D     R  +    P G    P+A+ +HGI
Sbjct: 11 FDLETTGTDPRTARIVTAAVIEVRDGEPAGRR-EWLADP-GVPIPPDAVAVHGI 62


>gi|218709810|ref|YP_002417431.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32]
 gi|218322829|emb|CAV19006.1| DNA polymerase III polC-type [Vibrio splendidus LGP32]
          Length = 238

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+   D II IG V   L+     +     L P  +K   +++ +HGIT 
Sbjct: 48  FLAVDFETTGLNPNKDGIITIGLVPFTLNRIYLRQAKHWTLRPK-QKLEEDSVVIHGITH 106

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEW 94
             + D P  S +  E  +         
Sbjct: 107 NDIIDAPDLSEVLDEILESMGGHIPVV 133


>gi|146386891|pdb|2IS3|A Chain A, Crystal Structure Of Escherichia Coli Rnase T
 gi|146386892|pdb|2IS3|B Chain B, Crystal Structure Of Escherichia Coli Rnase T
 gi|146386893|pdb|2IS3|C Chain C, Crystal Structure Of Escherichia Coli Rnase T
 gi|146386894|pdb|2IS3|D Chain D, Crystal Structure Of Escherichia Coli Rnase T
          Length = 215

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKXDEQGWLXPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                     +  +         A  +AHNA FD  F  A  +R +  
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIXVAHNANFDHSFXXAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L+  C+  G        H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGXDFDSTQAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|145299434|ref|YP_001142275.1| ribonuclease T [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142852206|gb|ABO90527.1| ribonuclease T [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 223

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A  +++ +      ++ F   + P  G      AL+  G
Sbjct: 18  VVIDVETAGFNARTDALLEIAAYTLKMDEDGWLAPDQVFHFHVEPFEGANLEKAALEFTG 77

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +     +   A  +AHNA FD GF+ A  +R    
Sbjct: 78  IDPFNPLRGAVSEKEALTEIFKGIRKGMKESDCNRAIIVAHNATFDHGFVMAAAERAGLK 137

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C+   I   ++  H AL D+   ++++  ++ 
Sbjct: 138 RNPFHPFATFDTAALSGLALGQTVLAKACQSARIPFDNKEAHSALYDTERTTELFCHIVN 197

Query: 177 GGSQIN 182
               + 
Sbjct: 198 RWKSLG 203


>gi|322392254|ref|ZP_08065715.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus peroris ATCC 700780]
 gi|321144789|gb|EFX40189.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus peroris ATCC 700780]
          Length = 823

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D       +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-EQYATDVNPHEH-LDSHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + ++   +    ++AHN +FD   +   L     +   P      L
Sbjct: 64  KRLAKAPEFSQVAGKIFELVKD--GIFVAHNVQFDANLLAEFLFFEGYELRTPRIDTVEL 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +         + +L  LC+  GI       H AL D+   +++++ M     Q+  G 
Sbjct: 122 AQVFYPQ-LEKYNLGILCQELGIP--LEQAHTALSDAQATAELFLCMRQKMFQLPKGL 176


>gi|168206308|ref|ZP_02632313.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
 gi|170662180|gb|EDT14863.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
          Length = 302

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 55/164 (33%), Gaps = 3/164 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG   + +       +   + P   +  P  + +HGI 
Sbjct: 1   MDFVAIDFET--ANEKRNSACSIGLTVVKNNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++++ +F+ I+ E  D+ +              V     +   I     + +  +  
Sbjct: 58  PEDVENERTFNEIWEEIKDYIDGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVM 117

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                +  P+ +    S    +  +  H  +      + LL+  
Sbjct: 118 AKNYYKSLPNHKLGTVSEALGFEFSHHHAGEDARACANILLNIC 161


>gi|319760755|ref|YP_004124692.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC]
 gi|317115316|gb|ADU97804.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC]
          Length = 209

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 5/115 (4%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+  ++  R  E+  V +      +R F   +   G    P   +L GIT+  
Sbjct: 7   VIDFETTGMTPAQGARATEVAIVLMEGERVVDR-FASLMK-TGVWIPPFITRLTGITNAM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +   P+   +  E   F  +      AHNA FD  F  +EL+    D   P    
Sbjct: 65  VDAAPAAEPVMREAARFVGDAPMV--AHNAAFDSRFWQSELRHAGLDAPHPFACT 117


>gi|157145913|ref|YP_001453232.1| ribonuclease T [Citrobacter koseri ATCC BAA-895]
 gi|166228562|sp|A8AH33|RNT_CITK8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|157083118|gb|ABV12796.1| hypothetical protein CKO_01664 [Citrobacter koseri ATCC BAA-895]
          Length = 215

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++E+ A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +   +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPSNPLRGAVSEYDALHAIFKMVRKGIKDSGCNRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGTQAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|167032729|ref|YP_001667960.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           GB-1]
 gi|166859217|gb|ABY97624.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           GB-1]
          Length = 203

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 8/130 (6%)

Query: 11  VFDIETTGLD--------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           VFD ETTG               I++I A+      +   +F+  + P+G     E   +
Sbjct: 7   VFDTETTGFPNFKAPSDHPDQPHIVDICALLYTPEGELVDSFEAMVRPDGWSIPNEVAVI 66

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGIT+E   +     ++  E +     Q    +AHN  FD   +   L+R     +  + 
Sbjct: 67  HGITNELALEHGIPEALAIEGFLNIWNQAGLRVAHNVSFDDRIMRIALKRFQDAWVAETF 126

Query: 123 IIDTLSIARR 132
                    +
Sbjct: 127 RDSPKFCTCQ 136


>gi|332361545|gb|EGJ39349.1| DNA polymerase III [Streptococcus sanguinis SK1056]
          Length = 814

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG   + +   T +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIALIENGIIT-KTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++   +  A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                L+         +  L +LC      IS  + H AL D+   + +++K+      +
Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCGLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172

Query: 182 NFGF 185
               
Sbjct: 173 PKAL 176


>gi|192362510|ref|YP_001983050.1| ribonuclease T [Cellvibrio japonicus Ueda107]
 gi|190688675|gb|ACE86353.1| ribonuclease T [Cellvibrio japonicus Ueda107]
          Length = 223

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 13/200 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G +++ D ++EI AV +      +   + TF   + P  G      AL   G
Sbjct: 24  VIVDVETGGFNAQTDALLEIAAVTIRMDEDGFLHRHETFAFQVEPFEGANIEQAALDFTG 83

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 S             A  + HNA FD+GF+NA ++R N  
Sbjct: 84  IDPDSPDRIAEPELMVMTDLFSAVRRAVKESGCTRAVMVGHNAHFDLGFVNAAVERCNIK 143

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   CK  GI  S+ + H A  D+   +D++  ++ 
Sbjct: 144 RNPFHPFSVFDTATLAGLAFGQTVLAKACKTAGIEFSNSAAHCAAYDAEKTADLFCLIVN 203

Query: 177 GGSQINFGFKTNEDRFFKEE 196
               +     ++++     E
Sbjct: 204 RWQTLGGWCASDDELDEDAE 223


>gi|23098512|ref|NP_691978.1| hypothetical protein OB1057 [Oceanobacillus iheyensis HTE831]
 gi|22776738|dbj|BAC13013.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 195

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 71/172 (41%), Gaps = 9/172 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +    D ET   + K +    +G V +++ ++    F   + P     S   + +HGIT+
Sbjct: 3   KFAAIDFET--ANEKRNSACSVGVV-IMNDTEIIDEFYTLINPLASFRS-GNVFIHGITE 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++ P+F+ ++     +  +     IAHNA FD+  +   L + +    + + +    
Sbjct: 59  EQVQEAPTFAELWPTLSAYLED--TILIAHNASFDMSVLRQSLNKYDIPCPNYTSLCTVK 116

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                      + L+++   +G      + H A+ D+   + +++  +    
Sbjct: 117 ISRLIWPQLENHKLHTVANHHG---IALNHHHAMDDARASAKIFLASLAEQK 165


>gi|148980340|ref|ZP_01816006.1| DNA polymerase III, epsilon subunit [Vibrionales bacterium SWAT-3]
 gi|145961282|gb|EDK26593.1| DNA polymerase III, epsilon subunit [Vibrionales bacterium SWAT-3]
          Length = 238

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITD 67
            IV D+ETTGLDS+ D I+ +G V+++       +   ++L  + + N+  A+  H    
Sbjct: 51  YIVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAKHIYLNNDSQINAETAVINHITPQ 110

Query: 68  E 68
            
Sbjct: 111 M 111


>gi|86146291|ref|ZP_01064616.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
 gi|85836002|gb|EAQ54135.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
          Length = 238

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+   D II IG V   L+     +     L P  +K   +++ +HGIT 
Sbjct: 48  FLAVDFETTGLNPNKDGIITIGLVPFTLNRIYLRQAKHWTLRPK-QKLEEDSVVIHGITH 106

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEW 94
             + D P  S +  E  +         
Sbjct: 107 NDIIDAPDLSEVLDEILESMGGHIPVV 133


>gi|71066188|ref|YP_264915.1| ribonuclease T [Psychrobacter arcticus 273-4]
 gi|71039173|gb|AAZ19481.1| RNAse T [Psychrobacter arcticus 273-4]
          Length = 239

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 66/204 (32%), Gaps = 16/204 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-----------NGRK 54
           +V D+ET G +++ D ++EI  + + ++              + P               
Sbjct: 36  VVVDVETAGFNAQTDALLEIACIPVLMNEQGVFYPGEALNAHIEPFEGANLEPSALAFTG 95

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P       I ++             E     + +    I HNA FD+ F+NA + R N
Sbjct: 96  IDPNNPLRKAIAEDEKTALRRIFKGLKEVRRNEDCRQCVLIGHNAHFDLAFLNAAVLRTN 155

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +P               +    + +  CK  G+       H AL D+   ++++  
Sbjct: 156 NKSHNPFHNFSVFDTVTLSALAFGQTVLARACKAAGLDFDGNDAHSALYDTQKTAELFCY 215

Query: 174 MMVGGSQINFGFKTNEDRFFKEEK 197
           ++     +     +  +      K
Sbjct: 216 ILNNYPMLANAMHSEPETAADNNK 239


>gi|270295360|ref|ZP_06201561.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274607|gb|EFA20468.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 163

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 6/161 (3%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+     D ET   + +   +  +G V + D       +   + P     +    ++HG+
Sbjct: 1   MKDFAAIDFET--ANEQRTSVCSVGVVIVRDGEIV-DHYYNLIRPEPEYYTYWNTRVHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T    +D P F  ++ E            +AHN  FD   + A  +    D  D      
Sbjct: 58  TLADTRDAPIFPVVWQEIAPRIEG--LPLVAHNKAFDESCLKAVFRTYCMDYPDYEFHCT 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +  R         L+++    G  +       A  ++  
Sbjct: 116 LQTSRRVLKGLPNYQLHTVAACCGYQLEQHHHALADAEACA 156


>gi|161507623|ref|YP_001577577.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus DPC 4571]
 gi|160348612|gb|ABX27286.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus DPC 4571]
          Length = 927

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 7/169 (4%)

Query: 9   KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    K   II+ G   + +     +T+   + P+  +     + L GI +
Sbjct: 10  FAVVDLETTGTQREKGHHIIQFGCAIIKNMKVV-KTYSFMINPH-HEIPQSVVNLTGIHN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIID 125
           E ++ K  FS    +  +        ++AHN  FD+ F+N EL +   + L       ++
Sbjct: 68  EDVQGKDDFSVYAPKIIEILKG--TVFVAHNVDFDLPFLNYELVQHGYEALTNKAIDTVE 125

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              IA    PS +    +   +      H++   A   + LL  +  K+
Sbjct: 126 LAKIAFPTLPSYKLSDLTAQLKIKHLNPHKADSDAYGTAVLLIKIIHKL 174


>gi|87121336|ref|ZP_01077226.1| ribonuclease T [Marinomonas sp. MED121]
 gi|86163493|gb|EAQ64768.1| ribonuclease T [Marinomonas sp. MED121]
          Length = 216

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 74/186 (39%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A  + + +  +   + T +  + P  G      AL+  G
Sbjct: 14  VVIDVETAGFNNKTDALLEIAASILRMDENGELYIHETIEFNVRPFEGANLEKSALEFTG 73

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I     + K            S   +       + A  + HNA FD GF+NA ++R +  
Sbjct: 74  IDPFDPERKDVVEAEVLGQIFSKVRKELKSVGCKRAILVGHNAAFDHGFLNAAIERCDIK 133

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + +       +  L   C+   I  S+   H A  D+   ++++ +++ 
Sbjct: 134 RNPFHPFSSFDTASLAGLAFGQTVLAKACEAAAIPFSNAEAHSAKYDTEKTAELFCEIVN 193

Query: 177 GGSQIN 182
              ++ 
Sbjct: 194 RWKRLG 199


>gi|254419026|ref|ZP_05032750.1| exonuclease family [Brevundimonas sp. BAL3]
 gi|196185203|gb|EDX80179.1| exonuclease family [Brevundimonas sp. BAL3]
          Length = 476

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCPNGRKNSPEA 59
          M  + +D ETTGL    D+I++  A+           F+    L P+   +    
Sbjct: 1  MGFVFYDTETTGLSKGFDQIVQFAAIHTDGDLNELDRFELRCRLQPHVVPHPKAM 55


>gi|83814553|ref|YP_445082.1| exonuclease, putative [Salinibacter ruber DSM 13855]
 gi|83755947|gb|ABC44060.1| exonuclease, putative [Salinibacter ruber DSM 13855]
          Length = 249

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPN 51
          + FD+E TG D +  RII+IG    +   D +  + T  V + P 
Sbjct: 9  VFFDLEATGTDPQAARIIQIGMQRFVPSGDGAALDETIDVLVDPQ 53


>gi|34540075|ref|NP_904554.1| exonuclease [Porphyromonas gingivalis W83]
 gi|34396386|gb|AAQ65453.1| exonuclease [Porphyromonas gingivalis W83]
          Length = 163

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 63/167 (37%), Gaps = 7/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   +++   +  +G + +      +R +   + P     +    ++HG+T  
Sbjct: 4   FAAIDFET--ANAERTSVCSVGIIVVRGGQIVHR-YYSLIRPEPDYYNYHNTRVHGLTAA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +    F  +++E            +AHN  FD G + A  +    D  D        +
Sbjct: 61  DTESARIFPDVWAEVEPLIAG--LPLVAHNKPFDEGCLKAVFRMYRMDYPDYPFFCTLQA 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R+    S + L ++ +  G   +    H AL D+   + + +K++
Sbjct: 119 ARRQLRHLSDHRLPTVAQCCG--YTLAQHHQALADAEACAAIALKLL 163


>gi|228477577|ref|ZP_04062210.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           salivarius SK126]
 gi|228250721|gb|EEK09919.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           salivarius SK126]
          Length = 828

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 75/181 (41%), Gaps = 8/181 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  KN  +  + D+E T   S    II++G V + +    +  F   + P+ ++     +
Sbjct: 1   MSEKNTNKYAIVDLEATSASS-TASIIQVGIVIMQNGQVIDE-FASDVNPH-QELDDHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I    ++   +    ++AHN KFD   +        +     
Sbjct: 58  HLTGITDQQLAQAPDFSEIARTIFELIED--CIFVAHNVKFDANLLA--EALFMEGFELR 113

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  +DT+ +A+  +P+      S   +  + +     H A+ D+     +   +M   + 
Sbjct: 114 TPRVDTVELAQVFYPTLEQYKLSHLSKV-LNLDLAQAHTAIEDARATGQLLFHLMDKITS 172

Query: 181 I 181
           +
Sbjct: 173 L 173


>gi|325989695|ref|YP_004249394.1| DNA polymerase III polC-type [Mycoplasma suis KI3806]
 gi|323574780|emb|CBZ40440.1| DNA polymerase III, polC-type [Mycoplasma suis]
          Length = 1438

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           +FD+ETTGL+   D IIEI  ++    +     +   + 
Sbjct: 396 IFDLETTGLNPIFDEIIEIFVLKYSSGTVI-DHYYSLIR 433


>gi|325973260|ref|YP_004250324.1| DNA polymerase III PolC [Mycoplasma suis str. Illinois]
 gi|323651862|gb|ADX97944.1| DNA polymerase III, PolC [Mycoplasma suis str. Illinois]
          Length = 1438

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           +FD+ETTGL+   D IIEI  ++    +     +   + 
Sbjct: 396 IFDLETTGLNPIFDEIIEIFVLKYSSGTVI-DHYYSLIR 433


>gi|332977795|gb|EGK14553.1| DNA-directed DNA polymerase III epsilon subunit [Psychrobacter sp.
           1501(2011)]
          Length = 201

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 61/170 (35%), Gaps = 4/170 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + +  D E TGL+ K D ++ I A+ +     ++ +     +C      + E + +HG+ 
Sbjct: 32  KWVAIDCEMTGLNPKKDHLLSIAAIHINGSNIQSGQGLH-LICRPPVMPTKETIVIHGLR 90

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH--NAKFDVGFINAELQRINKDPLDPSRII 124
              +++  S+  +      F + +         +  F      + +     +P+   R +
Sbjct: 91  PIDVENGLSYEQMLERLLPFIDNRPIVGYCPQLDMGFLNKISKSYMGTALPNPIIDIRDL 150

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  R    S            + +   + H A  D+ + + V++ +
Sbjct: 151 YNRYSGNRTQGISHQAQQLSSIATQLQLPELAAHDAYNDALMTAMVFLHL 200


>gi|329956618|ref|ZP_08297191.1| DNA polymerase III, epsilon subunit family protein [Bacteroides
           clarus YIT 12056]
 gi|328523990|gb|EGF51066.1| DNA polymerase III, epsilon subunit family protein [Bacteroides
           clarus YIT 12056]
          Length = 163

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 5/159 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
                D ET   + +   +  +G V + D    +  +   + P     +    ++HG+T 
Sbjct: 3   NFAAIDFET--ANEQRTSVCSVGVVIVRDGEIVDN-YYSLIRPEPEYYTYWNTRVHGLTL 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                 P F +++ E            +AHN  FD   + A  +    D  D        
Sbjct: 60  ADTACAPVFPTVWQEIAPRIEG--LTLVAHNKAFDESCLKAVFRTYGMDYPDYDFRCTLQ 117

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           +  R         L+++    G  +       A  ++  
Sbjct: 118 ASRRAIKGLPDYQLHTVAAWCGYRLEQHHHALADAEACA 156


>gi|300770507|ref|ZP_07080386.1| DNA-directed DNA polymerase III epsilon subunit [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762983|gb|EFK59800.1| DNA-directed DNA polymerase III epsilon subunit [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 203

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 65/200 (32%), Gaps = 11/200 (5%)

Query: 9   KIVFDIE--TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            I  D E  T    +  + +  +G V +     T+  F   + P   +   +  ++HGI 
Sbjct: 6   FIAIDFELAT----AAYNSVCSVGIVRVDQGVITDE-FYSLVKPPKNEYMWQTTRVHGIK 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +   D P+F  I+ +  D    +           +V     +   ++   L    + + 
Sbjct: 61  PKDTADAPTFEEIYPKIKDLLQNRKMVAHNEKFDREVLSKTMKACGLDYRELHLPVMWEC 120

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS----DVYIKMMVGGSQIN 182
            S   R     +  LN  C+  GI ++H         +  L     +V  +++       
Sbjct: 121 TSKIYRDKGFKKTKLNLCCEIMGIDLNHHEALSDAKAAAFLYLKQNEVTQELLDRVFPAE 180

Query: 183 FGFKTNEDRFFKEEKKTVPN 202
                 ++   K E     +
Sbjct: 181 ELLIQPDEIAKKSESHNGSD 200


>gi|220913226|ref|YP_002488535.1| DNA polymerase III subunit epsilon [Arthrobacter chlorophenolicus
           A6]
 gi|219860104|gb|ACL40446.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
          Length = 236

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 62/214 (28%), Gaps = 3/214 (1%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   N + +  FD+ETTG +S+  RI+      +    +  R  +    P     +  + 
Sbjct: 1   MSTWNTLPRAAFDLETTGRNSRAARIVTASVTVVDHRGEVIREHEWLADPGVEIPTEASD 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFW---DFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                T++  KD      +  E         +     IA NA +D   + AE  R     
Sbjct: 61  VHGVTTEQARKDGRPAHEVTRELAAVLQELFDTGVPVIAFNASYDFTVLAAESARYGVPQ 120

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L    ++D   + ++     +             +   + H +  D+     V   M   
Sbjct: 121 LTRFPVLDPYIMNKQVDRYRKGKRTLTALCEEYGVVLDNAHTSAADALATLKVLDAMAGK 180

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             ++                    +     R   
Sbjct: 181 FPKLMMPASQLHQLQVDWAVTQAADFQGYLRKTK 214


>gi|148239379|ref|YP_001224766.1| DNA polymerase III epsilon subunit [Synechococcus sp. WH 7803]
 gi|147847918|emb|CAK23469.1| DNA polymerase III epsilon subunit [Synechococcus sp. WH 7803]
          Length = 272

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 10/167 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++ D ETTGLD+  D+ +E+GA+   + + +        L      N  EA+      
Sbjct: 43  RLLIVDTETTGLDADRDQCLELGAILFSIPHRQVLAQMSCLL--PVDHNPAEAINRIPAE 100

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L            +++         +AHNA FD  +       + +        ++ 
Sbjct: 101 VSRLDQP---WGDGLAWFERMMASADYLVAHNAAFDRQWFGRG--SLPEATRPWLCTLED 155

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +     ++  +R  +  L   YGI +     H AL D   L++V+ +
Sbjct: 156 VRWPEARNLRARPSVIDLALAYGIPVWSA--HRALTDCMYLAEVFQR 200


>gi|282880819|ref|ZP_06289515.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305353|gb|EFA97417.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 183

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 61/167 (36%), Gaps = 9/167 (5%)

Query: 8   RKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
             I  D ET TG   K   + E G   + D      T    + P     S   +++HGI 
Sbjct: 5   NFIAIDFETATG---KRASVCEAGICVVKDGKIV-ETKSWLIRPEDNAYSYWNIQIHGIH 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E  ++ PSF  ++ E   +  E     +AHNA FD+  I   L+  + D LD       
Sbjct: 61  PEDTENAPSFPCVWQEILTYLKE-TPILVAHNAAFDISCIRKSLELYHLDTLDVDYYCTL 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +                       I   + H A  D+ + + ++++
Sbjct: 120 RAARHHYDFECHTL---GYLCEQFEIPEGTHHRAGDDAEMCARLFLR 163


>gi|269103713|ref|ZP_06156410.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163611|gb|EEZ42107.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 237

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 7/171 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITD 67
            +V D ETTG D + D I+ +G V +        T  ++ +  + +K  PE   ++ IT 
Sbjct: 52  YLVLDFETTGFDPEQDDILSVGFVTISQQRIDLSTATELLIKDSQQKVKPETAIINHITT 111

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L          +  ++         +AH A  +  F+N  L    + P  P   +DTL
Sbjct: 112 EKLAHGVELDCAMAALFNAMKG--KIMVAHGAMIEQRFLNHYLATRYQLPPLPIIWLDTL 169

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISH----RSKHGALLDSHLLSDVYIKM 174
           +I +      +    +  +   I   H       HGA++D+   +++ + +
Sbjct: 170 TIEKSLSIHRQQLKANDYRLAQIRQRHGLPAYPAHGAVIDAIATAELLLVL 220


>gi|258647163|ref|ZP_05734632.1| exonuclease [Prevotella tannerae ATCC 51259]
 gi|260853133|gb|EEX73002.1| exonuclease [Prevotella tannerae ATCC 51259]
          Length = 163

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 5/149 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   +     +  IG V +    +   +F   + P          ++HG+   
Sbjct: 4   FAAIDFET--ANQARSSVCSIGLVVVRGGEQV-DSFYALIRPEPNYYCYWNSRIHGLRQS 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             ++ P FS +++E            +AHN +FD G + A  Q    D  D + +    +
Sbjct: 61  DTENAPVFSKVWTEIAPLIEG--LPLVAHNCRFDQGCLKAVFQVYQMDYPDYTFLDTLTA 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSK 157
                     + L+++    G  +     
Sbjct: 119 ARHALPHLDNHQLHTVAAACGYQLEQHHH 147


>gi|238895034|ref|YP_002919768.1| ribonuclease T [Klebsiella pneumoniae NTUH-K2044]
 gi|238547350|dbj|BAH63701.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 197

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 13/177 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+  ++ ++     + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I     +           +   +  +     +   A  +AHNA FD  F     +R    
Sbjct: 80  INPHDPQRGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                  +   + A       +  L+  C   G+           +        + +
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACIAAGMPFDGAQLTPPCMIPSRRRSCFAR 196


>gi|126665477|ref|ZP_01736459.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
 gi|126630105|gb|EBA00721.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
          Length = 245

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 4/137 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL +    II +G V   L+  + +      + P    +   ++ +HGIT  
Sbjct: 56  VAIDFETTGLSATEHSIISVGLVPFTLEGIQLSAARHWLVKPKLALH-QTSVTIHGITHA 114

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P    I  E  +         + H    +  F++  L+   ++ +    +     
Sbjct: 115 DLEQAPDLVDILPELLECLAG--RLPVVHYRDIERPFLDVALRHRLQEGIQFPLLDTMAI 172

Query: 129 IARRKHPSSRNDLNSLC 145
            A            +  
Sbjct: 173 EAHLHPDRRPTFWQTWR 189


>gi|330991910|ref|ZP_08315859.1| DNA polymerase III polC-type [Gluconacetobacter sp. SXCC-1]
 gi|329760931|gb|EGG77426.1| DNA polymerase III polC-type [Gluconacetobacter sp. SXCC-1]
          Length = 309

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL---DYSKTN--RTFQVFLCPNGRKNSP 57
             D+ETTGL +  D IIE G V  +   +         F     P+      
Sbjct: 57  FLDLETTGLSAAKDEIIEFGIVPFVYTLEGKILGTLEPFSRLREPSCPIPPQ 108


>gi|330822675|ref|YP_004385978.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601]
 gi|329308047|gb|AEB82462.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601]
          Length = 209

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 5/115 (4%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+  ++  R  E+  V +      +R F   +   G    P   +L GIT+  
Sbjct: 7   VIDFETTGMTPAQGARATEVAIVLMEGERVVDR-FASLMK-TGVWIPPFITRLTGITNAM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +   P+  S+  E   F  +      AHNA FD  F  +EL+    D   P    
Sbjct: 65  VDAAPAAESVMREAARFVGDAPMV--AHNAAFDSRFWQSELRHAGLDAPHPFACT 117


>gi|289207535|ref|YP_003459601.1| ribonuclease T [Thioalkalivibrio sp. K90mix]
 gi|288943166|gb|ADC70865.1| ribonuclease T [Thioalkalivibrio sp. K90mix]
          Length = 228

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 71/183 (38%), Gaps = 13/183 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D +   ++++ AV L     D+   +RT  + + P  G +  P++L+++G
Sbjct: 24  VVVDVETGGFDCRRHALLQVAAVFLRRDENDHLVRDRTVSLHVRPYEGSEMDPKSLEVNG 83

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +      S         + + A  + HNA FD+GF++   +R    
Sbjct: 84  IDPYHPLRAAYPEDQAMGRLFSEVRREVKINHCKRAILVGHNAHFDLGFVHTAAERCGIK 143

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +++       +  L       G+     + H A  D+   +D++ ++  
Sbjct: 144 RNPFHPFSSLDTVSLAALAFGQTVLARAADAAGLGWDAEAAHSAAFDAEKTADIFCQIAN 203

Query: 177 GGS 179
              
Sbjct: 204 RWQ 206


>gi|262283016|ref|ZP_06060783.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp.
           2_1_36FAA]
 gi|262261268|gb|EEY79967.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp.
           2_1_36FAA]
          Length = 818

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  + D+E TG  S   +II++G V L D  +  +T+Q  + P+         +L G++
Sbjct: 1   MKYAIVDLEATGTGS-TAKIIQVGIVILEDG-EIKQTYQTDINPHEALE-EHIKQLTGLS 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           D+ L   P FS +  E ++   +  A ++AHN KFD   +   L  
Sbjct: 58  DQRLSQAPDFSQVAREIYELIED--AVFVAHNVKFDANLLAESLFW 101


>gi|149926412|ref|ZP_01914673.1| Exonuclease [Limnobacter sp. MED105]
 gi|149824775|gb|EDM83989.1| Exonuclease [Limnobacter sp. MED105]
          Length = 244

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 64/179 (35%), Gaps = 14/179 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D+E++GL+ K DR+I + A  ++             TF+V +            +
Sbjct: 36  RWVVLDVESSGLNPKKDRLISVAATAIVFDAQRRPRISLTDTFEVVIKQPPEIVDMIEFE 95

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFF------NEQNAEWIAHNAKFDVGFINAELQRINK 115
                +  +      +       +           ++  IA ++ FD   IN  L+++  
Sbjct: 96  AIDKNNILIHGIGIGAQQKGVKAEVALSEFLRYVGHSPLIAFHSWFDEILINKALRKVLG 155

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  +      A     + +  L+   +RYGI      +H A  D    + + +K+
Sbjct: 156 RTTHRHWLDLEHLAAVLHKENHQLPLDVWMQRYGIEC--EQRHQAAADVLATAQLLMKL 212


>gi|330446493|ref|ZP_08310145.1| ribonuclease T [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490684|dbj|GAA04642.1| ribonuclease T [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 218

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L      + K   T    + P  G   + EAL+ +G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVAPFEGAILNKEALEFNG 79

Query: 65  ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F                     +     +   A  +AHNA FD  F+ A  +R   
Sbjct: 80  IRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHSFVMAASERAKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                       + A       +  L   C+   I   +R  H AL D+   ++++ +++
Sbjct: 140 KRNPFHPFATFDTAALSGLAFGQTVLAKACQTANIPFDNREAHSALYDTERTAELFCEIV 199

Query: 176 VGGSQIN 182
               ++ 
Sbjct: 200 NKWKKLG 206


>gi|121997525|ref|YP_001002312.1| ribonuclease T [Halorhodospira halophila SL1]
 gi|121588930|gb|ABM61510.1| RNAse T [Halorhodospira halophila SL1]
          Length = 226

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 69/184 (37%), Gaps = 14/184 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-----QVFLCP-NGRKNSPEALKLH 63
           +V D+ET GL ++ D +++I AV L     T R +        + P  G +  P+AL+L+
Sbjct: 34  VVVDVETGGLQAETDALLQIAAVILRAEEGTGRLYPAETHTCHVQPFEGARIDPKALELN 93

Query: 64  GITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           GI  E                 +   +         A  + HNA FD+ F+NA + R   
Sbjct: 94  GIDPEHPLRMAVPERDALGKMFNPVRQELRNTGCNRAVLVGHNAFFDLAFLNAAVTRTGF 153

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                       +         +  L    K  GI    +  H A+ D+   ++++  ++
Sbjct: 154 KRNPFHPFSSFDTATLGGLAYGQTVLAKAVKAAGIEWDAKEAHSAIYDAEKTAELFCAIV 213

Query: 176 VGGS 179
               
Sbjct: 214 NCWD 217


>gi|18310383|ref|NP_562317.1| DNA polymerase III subunit epsilon [Clostridium perfringens str.
           13]
 gi|18145063|dbj|BAB81107.1| probable DNA polymerase III epsilon chain [Clostridium perfringens
           str. 13]
          Length = 302

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 3/164 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG   + D       +   + P   +  P  + +HGI 
Sbjct: 1   MDFVAIDFET--ANEKRNSACSIGLTVVKDNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++++ +F+ I+ E  D+ +              V     +   I     + +  +  
Sbjct: 58  PEDVENERTFNEIWEEIKDYIDGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVM 117

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                +  P+ +    S    +  +  H  +      + LL+  
Sbjct: 118 AKNYYKSLPNHKLGTVSEALDFEFSHHHAGEDARACANILLNIC 161


>gi|188579669|ref|YP_001923114.1| exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
 gi|179343167|gb|ACB78579.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
          Length = 297

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 70/211 (33%), Gaps = 8/211 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + + D    +G   +       R     + P   + SP  +++HGI 
Sbjct: 1   MSVVAIDFET--ANERRDSACAVGLAWIEGGRVVRRE-TRLIRPPQMRFSPGNIRIHGIL 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P+F  +F+EF        A  +AHNA FD+G + A L    +   D +     
Sbjct: 58  PADVRDAPTFPEVFAEFRPDLTG--ALLLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
               R     + + L    K  G        H A  D+   +++ +  +      +    
Sbjct: 116 QIARRIFPDPAGHGL---AKVAGRLGIRFEHHDAGEDAFACAEIALAALRETGAADIADL 172

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
                         P     +       R +
Sbjct: 173 ARGLGLMPIRAVAGPRRDFTRSTSAHALRAS 203


>gi|300858320|ref|YP_003783303.1| hypothetical protein cpfrc_00902 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685774|gb|ADK28696.1| hypothetical protein cpfrc_00902 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206036|gb|ADL10378.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis C231]
 gi|302330589|gb|ADL20783.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276273|gb|ADO26172.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis I19]
          Length = 203

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 57/177 (32%), Gaps = 5/177 (2%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALK 61
           + +K R +  D+ETT L     +I+ IG V + D          VF+     ++      
Sbjct: 25  KNDKTRFLAVDMETTALLPTKGKILSIGWVPIEDGRVQLADAGHVFIRSENLEHDSVGNS 84

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
                          S   +      + +    +AH A  ++ F +A  +R    PL   
Sbjct: 85  AALHNITDTMLAEGESEHSAMEMLLSSLRGRVLLAHFAPIELRFGDAACRRHFGAPLRVP 144

Query: 122 RIIDTLSIARRKHPSSRNDLNS----LCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +       R                   R    + H   H AL D+   +++Y+ +
Sbjct: 145 YVDTMELERRHMERMGTYPRGEDLRLARVRKRYGLPHYRSHNALTDALACAELYLAL 201


>gi|188994191|ref|YP_001928443.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis
           ATCC 33277]
 gi|188593871|dbj|BAG32846.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis
           ATCC 33277]
          Length = 163

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 62/167 (37%), Gaps = 7/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   +++   +  +G + +      +R +   + P     +    ++HG+T  
Sbjct: 4   FAAIDFET--ANAERTSVCSVGIIVVRGGEIVHR-YYSLIRPEPDYYNYHNTRVHGLTAA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +    F  +++E            +AHN  FD G + A  +    D  D        +
Sbjct: 61  DTESARIFPDVWAEVEPLIAG--LPLVAHNKPFDEGCLKAVFRMYRMDYPDYPFFCTLQA 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R+    S + L ++ +  G        H AL D+   + + +K++
Sbjct: 119 ARRQLRHLSDHRLPAVAQCCG--YILAQHHQALADAEACAAIALKLL 163


>gi|32491084|ref|NP_871338.1| ribonuclease T [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
 gi|30173142|sp|Q8D2L9|RNT_WIGBR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|25166291|dbj|BAC24481.1| rnt [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 215

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCPNG---------RKNS 56
           +V D+ET G D   D ++EI  + L    +     +      + P           + N 
Sbjct: 21  VVIDVETAGFDPYRDALLEIAIITLRMDDNGFLRIDNKLHFNIIPTPGLNIKKSALKFNK 80

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            +            K      +         +   A  +AHNA FD  F+ + + R    
Sbjct: 81  IDPYNPFRAAINERKAIKEIFNTVRLGIKKQSCSKAVVVAHNAYFDHSFLMSAVDRSKIK 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L+  C   GI  ++   H AL DS   ++++ +++ 
Sbjct: 141 YNPFHSFSTFDTATLSGLVLGQTVLSKACIIAGIEFNNNYAHSALYDSKKTAELFCEIVN 200

Query: 177 GGSQIN 182
              ++ 
Sbjct: 201 RWKKMG 206


>gi|168215255|ref|ZP_02640880.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|168216790|ref|ZP_02642415.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
 gi|170713347|gb|EDT25529.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|182381117|gb|EDT78596.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
          Length = 302

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 3/164 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG   + D       +   + P   +  P  + +HGI 
Sbjct: 1   MDFVAIDFET--ANEKRNSACSIGLTVVKDNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++++ +F+ I+ E  D+ +              V     +   I     + +  +  
Sbjct: 58  PEDVENERTFNEIWEEIKDYIDGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVM 117

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                +  P+ +    S    +  +  H  +      + LL+  
Sbjct: 118 AKNYYKSLPNHKLGTVSEALGFEFSHHHAGEDARACANILLNIC 161


>gi|148242440|ref|YP_001227597.1| DNA polymerase III epsilon subunit [Synechococcus sp. RCC307]
 gi|147850750|emb|CAK28244.1| DNA polymerase III epsilon subunit [Synechococcus sp. RCC307]
          Length = 264

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 63/216 (29%), Gaps = 8/216 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + D ETTGLD + D+++E+GA+   +            L        P      G     
Sbjct: 42  ILDTETTGLDPEVDQVLEVGAILFSVPQRAVLAQLSFLLPVEANAAEPLNGIRAGA---- 97

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
               P       +    F       +AHNA FD  +           P   +        
Sbjct: 98  -TQAPQPWQPSLQLLQQFASCAQLAVAHNAAFDRQWFGHGALPDLPLPWLCTMEDIHWPA 156

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--KMMVGGSQINFGFKT 187
            R   P       +L     +  +HR+    +  + +        +++  G +    ++ 
Sbjct: 157 DRLLRPRPSVRDLALAYGVPVWAAHRALTDCIYLAQVFERCDQLEQLIAEGREPRHLYRA 216

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
                 +   +                R+++ +L+ 
Sbjct: 217 QVSYDERHLAREAGFRWNDPVHGAWSRRLSERQLEA 252


>gi|87302916|ref|ZP_01085720.1| exonuclease [Synechococcus sp. WH 5701]
 gi|87282412|gb|EAQ74371.1| exonuclease [Synechococcus sp. WH 5701]
          Length = 187

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 7/148 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +   D +  +  + +      +RT+   + P           +HGIT  
Sbjct: 26  FVALDFET--ANYSRDSVCSLAIIRVESLKVVSRTY-RLIRPP--SPHFMFTDIHGITWG 80

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K +P+F       +    E  +   AHNA FD   + A            +  + T+ 
Sbjct: 81  DVKSEPTF-KELWHEFRPLFEGISFIAAHNASFDSSVMRACCDTYRIV-PPGAPYLCTVK 138

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRS 156
           +AR+       +L S+C   G+ + H +
Sbjct: 139 LARQTWQLRPANLPSVCAYLGLHLEHHN 166


>gi|307708507|ref|ZP_07644972.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus mitis NCTC 12261]
 gi|307615423|gb|EFN94631.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus mitis NCTC 12261]
          Length = 816

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +   L     +  +P 
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAENLFFEGYELRNPR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                           +  L  LC+  GI + H   H AL D+   +++ + +    +Q+
Sbjct: 116 VDT-VELAQVFFPKLEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLQEKMAQL 172

Query: 182 NFGF 185
             G 
Sbjct: 173 PKGL 176


>gi|197336459|ref|YP_002157302.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11]
 gi|197317949|gb|ACH67396.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11]
          Length = 238

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC 49
           +  D ETTGLD+  + II IG V   L+     ++   F+ 
Sbjct: 48 FVALDFETTGLDANQNSIISIGLVPFTLERIFCRQSQHWFVK 89


>gi|225868805|ref|YP_002744753.1| ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702081|emb|CAW99711.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 821

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 8/181 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI +   +  V D+E T        II++G V +++  +   ++Q  + P+    S    
Sbjct: 1   MINEFSQKYAVIDLEATSPGP-TASIIQVGIV-IIEGKEIVDSYQTDVNPH-EPLSDHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS +    ++   +    ++AHN  FD   +   L     D L  
Sbjct: 58  ALTGITDQQLAQAPDFSQVARTIFELIED--CVFVAHNVTFDANLLAEALFLEGYDLL-- 113

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  +DT+ +A+  +P       S      + ++    H A+ D+   ++++IK++     
Sbjct: 114 TPRVDTVELAQIFYPCLEKYSLSHLSEV-LDLNLSDAHTAIADAQATANLFIKLLHKIES 172

Query: 181 I 181
           +
Sbjct: 173 L 173


>gi|300934269|ref|ZP_07149525.1| DNA polymerase III subunit epsilon [Corynebacterium resistens DSM
          45100]
          Length = 225

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
            D+ETTGLDS+ DR++ IG + +  +   
Sbjct: 45 AVDVETTGLDSRKDRLLSIGWIPVDGHEID 74


>gi|260202912|ref|ZP_05770403.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis K85]
 gi|289572362|ref|ZP_06452589.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           K85]
 gi|289536793|gb|EFD41371.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           K85]
          Length = 329

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 71/201 (35%), Gaps = 7/201 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETLGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D+P F+ I  E  D         +AHN  FD  F+ AE +    +      +       
Sbjct: 75  DDQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R +       L +L   +G+       H A  D+ +L+ +    +    +++     +  
Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDARVLTGILAAALESARELDVWLPVHPV 190

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
              +     V +  L      
Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211


>gi|227548071|ref|ZP_03978120.1| DNA polymerase III, epsilon subunit [Corynebacterium
          lipophiloflavum DSM 44291]
 gi|227079869|gb|EEI17832.1| DNA polymerase III, epsilon subunit [Corynebacterium
          lipophiloflavum DSM 44291]
          Length = 188

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
            D+ETTGL  + D+++ IG V + D    
Sbjct: 18 AVDVETTGLKPERDQLVSIGWVPVNDRVID 47


>gi|110799993|ref|YP_696096.1| DNA polymerase III subunit epsilon [Clostridium perfringens ATCC
           13124]
 gi|168209994|ref|ZP_02635619.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|110674640|gb|ABG83627.1| exonuclease family protein [Clostridium perfringens ATCC 13124]
 gi|170711840|gb|EDT24022.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 302

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 3/164 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG   + D       +   + P   +  P  + +HGI 
Sbjct: 1   MDFVAIDFET--ANEKRNSACSIGLTVVKDNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++++ +F+ I+ E  D+ +              V     +   I     + +  +  
Sbjct: 58  PEDVENERTFNEIWEEIKDYIDGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVM 117

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                +  P+ +    S    +  +  H  +      + LL+  
Sbjct: 118 AKNYYKSLPNHKLGTVSEALGFEFSHHHAGEDARACANILLNIC 161


>gi|311694106|gb|ADP96979.1| ribonuclease T [marine bacterium HP15]
          Length = 208

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++E+ AV   + D        T    + P  G      AL   G
Sbjct: 11  VVVDVETAGFNPERDALLEVAAVILTMDDDGWVRRAETHVQQIDPFEGANLEQSALDFTG 70

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I     + +            S   +     + + A  + HNA FD  FI A   R +  
Sbjct: 71  IDPWNPEREAVPEREGLSEIFSPIRKAVKNHDCKRAVLVGHNATFDHNFIFAAALRADIR 130

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L   CK  GI  S++  H A  D+   +D++  ++ 
Sbjct: 131 RNPFHPFSTFDTATLAGLAYGHTVLAQACKLAGIPFSNKEAHSAAYDAEKTADLFCGIVN 190

Query: 177 GGSQIN 182
              ++ 
Sbjct: 191 RWKELG 196


>gi|90962124|ref|YP_536040.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius UCC118]
 gi|227891147|ref|ZP_04008952.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius ATCC 11741]
 gi|90821318|gb|ABD99957.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius UCC118]
 gi|227867021|gb|EEJ74442.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius ATCC 11741]
          Length = 177

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 5/175 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K      +    + +       F   + P+    S   +++HGIT
Sbjct: 1   MNFVAIDFET--ANPKRYSACSLALTVVKNNQ-IADQFYSLIKPDT-DFSWRNIQVHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ +++ PSF  ++    +F    N   +AHNA FD   +   L+  +        +   
Sbjct: 57  EKQVQNAPSFPELWPHIQNF-FTPNNLIVAHNASFDSSVLLRTLEHYDITLPHYQLLDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +  +       + L+++C    I + H         +     +Y   + G  Q+
Sbjct: 116 RTSKKFFKDFENHKLDTICNNLNIDLKHHHNALFDSTACAEILLYQANLFGEDQL 170


>gi|330719279|ref|ZP_08313879.1| DNA polymerase III, epsilon subunit [Leuconostoc fallax KCTC 3537]
          Length = 177

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 5/150 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + +    + I    + D    +  F   + P     S   + +HGI 
Sbjct: 1   MNFIAMDFET--ANHERHSAVSIALAIVRDDKIVDE-FYSLIRPET-YFSRRNVAIHGIE 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + D P F S           ++   +AHNA FD G +   L     +      +   
Sbjct: 57  EHDVLDAPKF-SELWPVIQPLFTEDKLVVAHNAPFDNGVLKGTLNYYGLEEPHYMLLDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156
            +  +     + + LN++ +  GI++ H  
Sbjct: 116 RTSRQFFPSFNNHKLNTVAENLGISLVHHH 145


>gi|194445493|ref|YP_002040683.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194404156|gb|ACF64378.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 215

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|16760479|ref|NP_456096.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16764782|ref|NP_460397.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29141761|ref|NP_805103.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56413597|ref|YP_150672.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|167551596|ref|ZP_02345350.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167994263|ref|ZP_02575355.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168229807|ref|ZP_02654865.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168235505|ref|ZP_02660563.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168240948|ref|ZP_02665880.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168264727|ref|ZP_02686700.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|194451220|ref|YP_002045472.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194469134|ref|ZP_03075118.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194737431|ref|YP_002114446.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197251543|ref|YP_002146611.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197264202|ref|ZP_03164276.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197362521|ref|YP_002142158.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|200389402|ref|ZP_03216013.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|213426003|ref|ZP_03358753.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213586461|ref|ZP_03368287.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
 gi|213609934|ref|ZP_03369760.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|213649691|ref|ZP_03379744.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|213855187|ref|ZP_03383427.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|238913165|ref|ZP_04657002.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289805704|ref|ZP_06536333.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
 gi|289824912|ref|ZP_06544333.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|54039259|sp|P66685|RNT_SALTI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|54042002|sp|P66684|RNT_SALTY RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|81821446|sp|Q5PH07|RNT_SALPA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|25356018|pir||AD0695 ribonuclease T [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16419954|gb|AAL20356.1| RNase T [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16502775|emb|CAD01933.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29137389|gb|AAO68952.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56127854|gb|AAV77360.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|194409524|gb|ACF69743.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194455498|gb|EDX44337.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194712933|gb|ACF92154.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197093998|emb|CAR59494.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197215246|gb|ACH52643.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197242457|gb|EDY25077.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197291124|gb|EDY30477.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|199601847|gb|EDZ00393.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205323544|gb|EDZ11383.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205327828|gb|EDZ14592.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205335262|gb|EDZ22026.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205339447|gb|EDZ26211.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205346854|gb|EDZ33485.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|261246638|emb|CBG24448.1| Exoribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993323|gb|ACY88208.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301157967|emb|CBW17462.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912417|dbj|BAJ36391.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224052|gb|EFX49115.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323129704|gb|ADX17134.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332988319|gb|AEF07302.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 215

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|326527927|dbj|BAJ89015.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 259

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
           + KM  +  D+E TGLD + DRI+EI  + + D   T R
Sbjct: 66  EYKMPLVWIDLEMTGLDIRKDRILEIACI-ITDGKLTKR 103


>gi|315650464|ref|ZP_07903534.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Eubacterium saburreum DSM 3986]
 gi|315487260|gb|EFU77572.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Eubacterium saburreum DSM 3986]
          Length = 299

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
            ++ DIET GLD++ + IIE+GA++ +    +   FQ  +   G
Sbjct: 130 FVIVDIETDGLDNEKNVIIEVGAIKSVSGVLS--EFQSLVNYEG 171


>gi|298369304|ref|ZP_06980622.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sp. oral taxon 014 str. F0314]
 gi|298283307|gb|EFI24794.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sp. oral taxon 014 str. F0314]
          Length = 463

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 83/215 (38%), Gaps = 13/215 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+E+TG +   DRI E+  +     +   + ++  + P  +        L GITDE +
Sbjct: 23  VVDLESTGGNFYRDRITEVAVLRFERGAA--KRYEWLVNPQ-QPIPKFVADLTGITDEAV 79

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P FS I ++     +   A  +AHN++FD  F+  E +R   D    +  + T+ ++
Sbjct: 80  SGAPVFSDIAADLLPLLHG--AVVVAHNSRFDYTFLRHEFRRAGMD--FAAPALCTVQLS 135

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-----F 185
           RR +P                I+  S+H A+ D   LSD   + +V      +       
Sbjct: 136 RRLYPQFYRHNLDSI-IERFGIAVESRHRAMADVAALSDFLERSLVEKGAEEWERHCRSL 194

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
              +       +     +  L     +   + + E
Sbjct: 195 MNPKMLPASLPEGLSRRLYRLPDSSGVLIWLDESE 229


>gi|269963087|ref|ZP_06177423.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832219|gb|EEZ86342.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 217

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 58/189 (30%), Gaps = 21/189 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M + +    I+ D ETTGL S    I+E  A+               + P       +A 
Sbjct: 11  MKKLSTENAIIIDTETTGLGSD-AEIVEFTAICADSGKVIVNE---LVKPTC-SIPADAT 65

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI----------------AHNAKFDVG 104
            +HGIT+E +KD P F  +FS  +          I                  NA +   
Sbjct: 66  AIHGITNEDVKDAPDFHLVFSNHFLPXLNGRLIIIYNSDFDTRLIIQSLDKHCNAVYVQS 125

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
             +   +                             L++ C +  + +S  + H AL D 
Sbjct: 126 VHDLFFKFCVPQCAMLWYAEFFGVWNEHHEDYKWQSLSNACAQQSVDVSDLTAHRALADC 185

Query: 165 HLLSDVYIK 173
            +   +   
Sbjct: 186 EMTRRLIHA 194


>gi|152993730|ref|YP_001359451.1| DNA polymerase III subunit epsilon [Sulfurovum sp. NBC37-1]
 gi|151425591|dbj|BAF73094.1| DNA polymerase III, epsilon subunit [Sulfurovum sp. NBC37-1]
          Length = 272

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V DIET G      ++IEIGAV +      +R  + F+            K+ GI  
Sbjct: 73  RYCVIDIETNGSKPGTSQVIEIGAVMVEKGEIVDR-LETFV--ECAFLPEYITKITGIEP 129

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
             LKD P+  +  ++   F  +        N  +
Sbjct: 130 IDLKDAPTRRAALTQLRQFMGDAVFVAHNANFDY 163


>gi|312131463|ref|YP_003998803.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella
           byssophila DSM 17132]
 gi|311908009|gb|ADQ18450.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella
           byssophila DSM 17132]
          Length = 270

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTG++   DRI+EI  +   +   T  T    + P       E   +HGI DE +
Sbjct: 14  IIDLETTGVNITRDRIVEI-CIAKANLDGTVETRTKKVNP-TIPIPLETSLIHGIYDEDV 71

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK 100
            ++P+F  +      F    +      N  
Sbjct: 72  ANEPTFKQLARSLAQFLEGCDLAGFNSNRF 101


>gi|327537942|gb|EGF24639.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica WH47]
          Length = 355

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 57/151 (37%), Gaps = 7/151 (4%)

Query: 7   MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M     D ET T    ++D   ++ AV +      +      + P     SP  +++HGI
Sbjct: 1   MDFTAIDFETAT---RRSDSACQLAAVRVRGGEIVDSA-CWLIRPRPFVFSPANIQIHGI 56

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   ++++P F  ++ E      +     IAHNA FD+G + A L+  +    D      
Sbjct: 57  TPGMVREEPEFGELWPEIQSTLGDDC--LIAHNASFDLGVLMACLESHDHPVPDMQYSCT 114

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
                R      R  L  L    GI   H  
Sbjct: 115 RAIARRTWPQQPRFGLKPLSDWLGIRFRHHD 145


>gi|317057849|ref|YP_004106316.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
 gi|315450118|gb|ADU23682.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
          Length = 295

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+ D ETTGL   +D ++++  ++          +  +L P    +  EA  ++ IT   
Sbjct: 128 IIIDTETTGLSELDDELLQVSIIDDAGNVL----YNSYLRPLYHTSWKEAECVNNITPRM 183

Query: 70  LKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           + + P+      +                    N  +  G I+   + +       + I 
Sbjct: 184 VAEAPTIYDEMPKINAIIKAAKKIIGFNTGFDENFLYFSGGISWMNKEVVDVMTMFAPIY 243

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              S     +        +    Y  +      H +L D +    VY
Sbjct: 244 GEWSEQYDDYKWQNLIKAADYYDYDWSSRPGEAHNSLADCYATLYVY 290


>gi|24379729|ref|NP_721684.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus mutans UA159]
 gi|24377689|gb|AAN58990.1|AE014965_11 putative ATP-dependent DNA helicase; DNA polymerase III, epsilon
           subunit (3'-5' exonuclease) [Streptococcus mutans UA159]
          Length = 820

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 81/174 (46%), Gaps = 8/174 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K   +  V D+E TG    +  II++G V + +     +T+   + P+ +  S   +
Sbjct: 1   MTEKKTRKYAVVDLEATGASH-SASIIQVGIVIIENEQII-QTYTTDVNPH-KPLSKAII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GITD  L+  P FS + ++ +   ++    ++AHN KFD   +   L     + L  
Sbjct: 58  RLTGITDAQLQQAPDFSEVAADIYHLIDD--CVFVAHNVKFDANLLAEHLFLEGFELL-- 113

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  +DT+ +A+  +P+             + I     H A+ D+   +++++K+
Sbjct: 114 TPRVDTVELAQVFYPTFEKYSL-GNLTELLKIDLSDAHTAIADAKATAELFLKL 166


>gi|32477333|ref|NP_870327.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica SH 1]
 gi|32447884|emb|CAD77402.1| probable DNA polymerase III polC-type [Rhodopirellula baltica SH 1]
          Length = 355

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 57/151 (37%), Gaps = 7/151 (4%)

Query: 7   MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M     D ET T    ++D   ++ AV +      +      + P     SP  +++HGI
Sbjct: 1   MDFTAIDFETAT---RRSDSACQLAAVRVRGGEIVDSA-CWLIRPRPFVFSPANIQIHGI 56

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   ++++P F  ++ E      +     IAHNA FD+G + A L+  +    D      
Sbjct: 57  TPGMVREEPEFGELWPEIQSTLGDDC--LIAHNASFDLGVLMACLESHDHPVPDMQYSCT 114

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
                R      R  L  L    GI   H  
Sbjct: 115 RAIARRTWPQQPRFGLKPLSDWLGIRFRHHD 145


>gi|167763751|ref|ZP_02435878.1| hypothetical protein BACSTE_02131 [Bacteroides stercoris ATCC
           43183]
 gi|167697867|gb|EDS14446.1| hypothetical protein BACSTE_02131 [Bacteroides stercoris ATCC
           43183]
          Length = 163

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 5/159 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
                D ET   + +   +  +G V + +  +   ++   + P     +    ++HG+T 
Sbjct: 3   NFAAIDFET--ANEQRTSVCSVGVVIVRNG-EIADSYYSLIRPEPEYYTYWNTRVHGLTL 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                 P F +++ E            +AHN  FD   + A  +    D  D        
Sbjct: 60  ADTSRSPVFPAVWQEIAPRIEG--LTLVAHNKAFDESCLKAVFRMYGMDYPDYDFRCTLQ 117

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           +  R         L+++    G  +       A  ++  
Sbjct: 118 ASRRAIKGLPDYQLHTVAAWCGYRLEQHHHALADAEACA 156


>gi|148977600|ref|ZP_01814176.1| ribonuclease T [Vibrionales bacterium SWAT-3]
 gi|145963115|gb|EDK28383.1| ribonuclease T [Vibrionales bacterium SWAT-3]
          Length = 211

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 14/188 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A+ L        +   T    + P  G      AL  +G
Sbjct: 20  VVIDVETAGFNAETDALLEICAITLKMDENGDLQPASTLHFHIEPFEGANIEQAALDFNG 79

Query: 65  ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           I D F   +              +  +     +   A  +AHNA FD+ F+NA  +R   
Sbjct: 80  IKDPFSPLRGAVSEQEALKEIYKLVRKEQKASDCSRAIMVAHNATFDLNFVNAASERCKL 139

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +         + A       +  L   C+  G+   ++  H AL D+   ++++  ++
Sbjct: 140 KRVPFHPFATFDTAALSGLAYGQTVLAKACRTAGMEFDNKEAHSALYDTQKTTELFCGIV 199

Query: 176 VGGSQINF 183
                  +
Sbjct: 200 NKVESPWW 207


>gi|182626433|ref|ZP_02954185.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|177908230|gb|EDT70788.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
          Length = 302

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 55/164 (33%), Gaps = 3/164 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG   + +       +   + P   +  P  + +HGI 
Sbjct: 1   MDFVAIDFET--ANEKRNSACSIGLTVVKNNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++++ +F+ I+ E  D+ +              V     +   I     + +  +  
Sbjct: 58  PEDVENERTFNEIWEEIKDYIDGNLVIAHNAAFDISVLRKTLDFYDILYPDFEYACTVVM 117

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                +  P+ +    S    +  +  H  +      + LL+  
Sbjct: 118 AKNYYKSLPNHKLGTVSEALGFEFSHHHAGEDARACANILLNIC 161


>gi|317969731|ref|ZP_07971121.1| putative DNA polymerase III, epsilon subunit [Synechococcus sp.
          CB0205]
          Length = 302

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVEL 34
          + D ETTGL     R IE+GAV  
Sbjct: 75 ILDTETTGLSPAEHRCIEVGAVLF 98


>gi|218190704|gb|EEC73131.1| hypothetical protein OsI_07145 [Oryza sativa Indica Group]
          Length = 247

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
           +M  +  D+E TGLD   DRI+EI  + + D   T +
Sbjct: 65  QMPLVWIDLEMTGLDVAKDRILEIACI-ITDGKLTKQ 100


>gi|304311282|ref|YP_003810880.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma
           proteobacterium HdN1]
 gi|301797015|emb|CBL45228.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma
           proteobacterium HdN1]
          Length = 297

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 5/148 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ET   ++    I +IG VE  + +   R +  ++ P         + +HGIT+ 
Sbjct: 9   FVAIDVET--ANANMASICQIGLVEYSNGTPI-REWSSYVNPED-YFDGMNVSVHGITEG 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P FS +         E        +                +             
Sbjct: 65  TVIGAPVFSEVSEVLRSML-EGRVVVCHTHFDRAAISKAFRKSGATELSCQWLDSAKVAR 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRS 156
            A          L+++ K  G T  H  
Sbjct: 124 RAWEVCAEKGYGLSAVSKMLGYTFQHHD 151


>gi|168463155|ref|ZP_02697086.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195634173|gb|EDX52525.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 215

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|161503473|ref|YP_001570585.1| ribonuclease T [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|204927787|ref|ZP_03218988.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205352852|ref|YP_002226653.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207857062|ref|YP_002243713.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|160864820|gb|ABX21443.1| hypothetical protein SARI_01547 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|204323129|gb|EDZ08325.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205272633|emb|CAR37543.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206708865|emb|CAR33195.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326627923|gb|EGE34266.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 215

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|59713121|ref|YP_205897.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114]
 gi|59481222|gb|AAW87009.1| DNA polymerase III, epsilon-subunit paralog (3' to 5'
          exonuclease) [Vibrio fischeri ES114]
          Length = 238

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC 49
           +  D ETTGLD+  + II IG V   L+     ++   F+ 
Sbjct: 48 FVALDFETTGLDANQNSIISIGLVPFTLERIFCRQSQHWFVK 89


>gi|62180023|ref|YP_216440.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161614147|ref|YP_001588112.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|168819183|ref|ZP_02831183.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|198245565|ref|YP_002215700.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|81309702|sp|Q57PK2|RNT_SALCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|62127656|gb|AAX65359.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161363511|gb|ABX67279.1| hypothetical protein SPAB_01887 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197940081|gb|ACH77414.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|205343777|gb|EDZ30541.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320086089|emb|CBY95863.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|322714491|gb|EFZ06062.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|326623447|gb|EGE29792.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 215

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|322388190|ref|ZP_08061794.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus infantis ATCC 700779]
 gi|321140862|gb|EFX36363.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus infantis ATCC 700779]
          Length = 816

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 75/174 (43%), Gaps = 9/174 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  +N  R +V D+E T   SK  +II++G V + D       +   + P+ R       
Sbjct: 1   MNFRNN-RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-EQYATDVNPHER-LDSHIK 56

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+TD+ L   P FS +  + ++   +    ++AHN +FD   +        +     
Sbjct: 57  ELTGLTDKRLAKAPEFSQVAEKIFELVKD--GIFVAHNVQFDANLLAEF--LFFEGYELR 112

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  IDT+ +A+  +P              + I     H AL D+   +++++ M
Sbjct: 113 TPRIDTVELAQIFYPQLEKYNL-GILCQELGIPLEQAHSALSDAQATAELFLCM 165


>gi|323498776|ref|ZP_08103762.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
 gi|323316138|gb|EGA69163.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
          Length = 210

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 75/181 (41%), Gaps = 8/181 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD     ++ I A +++ +   T+R F+V L    +     ++K+H I  
Sbjct: 30  YVSLDCETTSLDPNRAELVTIAAAKIIDNRIITSRPFEVRLR-APQSLDSNSVKIHQIRH 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L D         +  +F    N   + ++ ++D   ++   +R    PL    I  + 
Sbjct: 89  KDLVDGIDEKQALIQLLEFI--GNRPLVGYHIRYDKKILDLACRRHLGFPLPNPLIEVSQ 146

Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                  R  P++  DL+       + +  ++KH AL D+   + V++++   G   +  
Sbjct: 147 IYHDKLERHLPNAYFDLSLEAICKHLDLPMQNKHDALQDAISAALVFVRLT-KGDLPSLN 205

Query: 185 F 185
            
Sbjct: 206 L 206


>gi|89098850|ref|ZP_01171731.1| DNA polymerase III subunit epsilon [Bacillus sp. NRRL B-14911]
 gi|89086526|gb|EAR65646.1| DNA polymerase III subunit epsilon [Bacillus sp. NRRL B-14911]
          Length = 214

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 33/124 (26%), Gaps = 5/124 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ-----VFLCPNGRKNSPEALKLHGIT 66
            D+ETTGL    D IIE+  +       T    Q      FL       +          
Sbjct: 10  VDVETTGLAPGGDEIIELAFILFSYDGATGEILQVEEKESFLREPLSSRALRNYSSAYRI 69

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                +         E    F  +     AHNA FD  F+      +N      +     
Sbjct: 70  HGIPFEMVRGQVFHDESVQSFLNKADSVFAHNASFDRSFMYQMYPEVNDLKWYCTMKGVQ 129

Query: 127 LSIA 130
               
Sbjct: 130 WKKY 133


>gi|294508356|ref|YP_003572414.1| DNA helicase II [Salinibacter ruber M8]
 gi|294344684|emb|CBH25462.1| DNA helicase II [Salinibacter ruber M8]
          Length = 1227

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 3/168 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67
            ++ D+E T  D ++ R+ EIGA+++ D +  +R F   +  P                 
Sbjct: 827 YVMVDLEATSTDPRHCRVAEIGALKVRDGTVVDR-FSELVQLPEDLTADERETLRTVCGL 885

Query: 68  EFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +   D          + DF      A  +AHN +     +   L   ++     +   D 
Sbjct: 886 DPASDFDEARPEADVWADFCDFADTAPLVAHNGQRYDFRVLRRLANTHEADARWATTYDL 945

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L  A    P  R    +  +   +     + H AL D      +  +M
Sbjct: 946 LPAAHELFPDLRRYDAAHLRETLLDDDADTAHRALADCEDQQRILARM 993


>gi|322374613|ref|ZP_08049127.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C300]
 gi|321280113|gb|EFX57152.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C300]
          Length = 829

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 89/226 (39%), Gaps = 9/226 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + +    ++ +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIENGEIIDQ-YATDVNPH-EPLDSHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + ++   +    ++AHN +FD   +   L     +   P       
Sbjct: 64  QRLAAAPEFSQVAGKIFELVKD--GIFVAHNVQFDANLLAEFLFFEGYELRTPRVDT-VE 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                     + +L  LC+  GI + H   H AL D+   +++ + M     ++  G   
Sbjct: 121 LAQVLYPQFEKYNLGILCQELGIELEHA--HTALSDAQATAELLLYMRQKLFELPKGLLE 178

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           +      +       + + +  +      + + ++ H   ++   K
Sbjct: 179 SL-LNLADNLLYESYLVIEEVYQQQSLLSSPDLMELHGLFLKKESK 223


>gi|115446061|ref|NP_001046810.1| Os02g0465500 [Oryza sativa Japonica Group]
 gi|47496882|dbj|BAD19846.1| putative oligoribonuclease [Oryza sativa Japonica Group]
 gi|47497504|dbj|BAD19557.1| putative oligoribonuclease [Oryza sativa Japonica Group]
 gi|113536341|dbj|BAF08724.1| Os02g0465500 [Oryza sativa Japonica Group]
 gi|215687346|dbj|BAG91911.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 247

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
           +M  +  D+E TGLD   DRI+EI  + + D   T +
Sbjct: 65  QMPLVWIDLEMTGLDVAKDRILEIACI-ITDGKLTKQ 100


>gi|197286329|ref|YP_002152201.1| plasmid-related exonuclease [Proteus mirabilis HI4320]
 gi|194683816|emb|CAR44904.1| putative plasmid-related exonuclease [Proteus mirabilis HI4320]
          Length = 301

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 79/237 (33%), Gaps = 15/237 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPE 58
           +  M  ++ D ETTGL + ++ IIE+G V++L         +           G+     
Sbjct: 49  EQPM--VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIIDLISLYEDPGKPIPEL 106

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             +L GITD+ ++ +    S+ + +       +   +AHNA+FD  F       +     
Sbjct: 107 ITELTGITDDMVQGQHIDDSLVASW----LSDDPLVVAHNAQFDRPFFENRFAALGHLSW 162

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             S           +       L  L   Y    +           +LL +    ++   
Sbjct: 163 ACSASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFYLLPESVANLLSEA 222

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231
            +     +     F  ++                +K  +  I+++EL +    +  L
Sbjct: 223 DRRTVLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279


>gi|298485963|ref|ZP_07004037.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159440|gb|EFI00487.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 244

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 64/194 (32%), Gaps = 11/194 (5%)

Query: 4   KNKMRK-IVF-DIETTGL--------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53
           +N+M + I F D ETTGL        D +   +++I  +      +   +F+  + P G 
Sbjct: 37  ENQMSQLIAFYDTETTGLPRFKDPSDDPRQPHLVDICILLYTPQGELVDSFEAMIKPEGW 96

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
               E   +HGIT E   ++          +    EQ    +AHN  FD   +   ++R 
Sbjct: 97  TIPDEVAAIHGITTEMALEQGIPELEALGGFLRVYEQAGLRVAHNVSFDDRIMRIAIKRF 156

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             +               +   +      +  K           +     +  L     +
Sbjct: 157 IGEQAANEFKAMPNYCTCQSSKNIVKCPPT-AKMIAAGFGRPGMYKVPTVAEALRHFTGE 215

Query: 174 MMVGGSQINFGFKT 187
            +VGG +     + 
Sbjct: 216 ELVGGHRARPDTEA 229


>gi|209693722|ref|YP_002261650.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida
          LFI1238]
 gi|208007673|emb|CAQ77784.1| putative exonuclease [Aliivibrio salmonicida LFI1238]
          Length = 238

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC 49
           +  D ETTGLD+  + II IG V   L+  +   +   F+ 
Sbjct: 48 FVALDFETTGLDANQNSIISIGLVPFTLERIRCRESQHWFVK 89


>gi|254286229|ref|ZP_04961188.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           AM-19226]
 gi|150423644|gb|EDN15586.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           AM-19226]
          Length = 209

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 73/171 (42%), Gaps = 7/171 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD K   ++ I A ++  +   T++ F+V LC   +     ++++H I  
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLC-APQSLDSGSVRIHRIRH 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L D  S      +  +F    N   + ++  +D   ++   ++    PL    I  + 
Sbjct: 89  QDLHDGLSEKEALLQLIEFI--GNRPLVGYHIHYDKTILDIACRKHLGFPLPNRLIEVSQ 146

Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                  +  P++  DL+       + +  + KH AL D+   + V++++ 
Sbjct: 147 IYHDKLEKHLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIAAALVFVRLT 197


>gi|150025263|ref|YP_001296089.1| DNA polymerase III, epsilon subunit [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771804|emb|CAL43278.1| Probable DNA polymerase III, epsilon subunit [Flavobacterium
           psychrophilum JIP02/86]
          Length = 160

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 10/167 (5%)

Query: 7   MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M     D ET T           +G V + +    +  F   + P   + SP  + +HGI
Sbjct: 1   MTFTAIDFETATAFHP-----CSVGIVTVQNGVIVDE-FVTLIKPPNNQYSPFTIAVHGI 54

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                 +  SF  ++ E       +       +   +V   +  L  ++ + L+ S   +
Sbjct: 55  RPRDTVNAKSFLEVYPEIKKRLQNKTVVAHNESFDRNVLAKSMALYGLDYETLNISNRWE 114

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 +        L+  C+         + H AL D+   + +Y+
Sbjct: 115 CTLKIYKAKGFKPTKLSDCCQEMN---IKLNHHEALSDARACAKLYL 158


>gi|312278202|gb|ADQ62859.1| ATP-dependent DNA helicase [Streptococcus thermophilus ND03]
          Length = 828

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 76/181 (41%), Gaps = 8/181 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K+  +  + D+E T   S    II++G V + +    +  F   + P+ +K     +
Sbjct: 1   MSEKSTNKYAIVDLEATSASS-TACIIQVGIVIMQNGRVIDE-FASDVNPH-QKLDNHIV 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I    ++   +    ++AHN KFD   +        +     
Sbjct: 58  HLTGITDQQLSQAPDFSEIARTIFELIED--CIFVAHNVKFDANLLA--EALFMEGFELR 113

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  +DT+ +A+  +P+      S   R  + +     H A+ D+     + + +M   + 
Sbjct: 114 TPRVDTVELAQVFYPTLEQYNLSYLSRV-LNLDLAQAHTAIEDARATGKLLLHLMDKIAS 172

Query: 181 I 181
           +
Sbjct: 173 L 173


>gi|83815933|ref|YP_446416.1| DNA helicase II [Salinibacter ruber DSM 13855]
 gi|83757327|gb|ABC45440.1| DNA helicase II [Salinibacter ruber DSM 13855]
          Length = 1084

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 58/168 (34%), Gaps = 3/168 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67
            ++ D+E T  D ++ R+ EIGA+++ D +  +R F   +  P                 
Sbjct: 689 YVMVDLEATSTDPRHCRVAEIGALKVRDGTVVDR-FSELVQLPEDLTADERETLRTVCGL 747

Query: 68  EFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +   D        + + DF      A  +AHN +     +   L   ++     +   D 
Sbjct: 748 DPASDFDEARPEAAVWADFCAFVDGAPLVAHNGQRYDFRVLRRLANTHEADAHWATTYDL 807

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L  A    P  R    +  +   +     + H AL D      +  +M
Sbjct: 808 LPAAHELFPDLRRYDAAHLRETLLDDDADTAHRALADCEDQQRILARM 855


>gi|229113222|ref|ZP_04242717.1| exonuclease [Bacillus cereus Rock1-15]
 gi|228670248|gb|EEL25596.1| exonuclease [Bacillus cereus Rock1-15]
          Length = 288

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 11/144 (7%)

Query: 5   NKM-----RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           NKM     + ++ D ETTGL +  D+IIEI  ++L             + P       EA
Sbjct: 122 NKMFINKDQFVILDTETTGL-TLRDQIIEISVIDLAGKIL----LNSLVKP-TIIIPAEA 175

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGIT+E +    S+++I+ E  +    +            +         +      
Sbjct: 176 TSIHGITNEMIHGAQSWTTIYQELLEVTVGKTILIYNAEFDLGMIENTCIANNVEFKDFK 235

Query: 120 PSRIIDTLSIARRKHPSSRNDLNS 143
            + ++   +              +
Sbjct: 236 STCVMKMYADYVDSKKWISLSDAT 259


>gi|154252272|ref|YP_001413096.1| exodeoxyribonuclease I [Parvibaculum lavamentivorans DS-1]
 gi|154156222|gb|ABS63439.1| Exodeoxyribonuclease I [Parvibaculum lavamentivorans DS-1]
          Length = 468

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 4/96 (4%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHG 64
          M  + FD ETTGL    D+I+   A+           F     L P+   +         
Sbjct: 1  MSFVFFDTETTGLRHGFDQIVHFAAIRTDADLNEIDRFEAHSRLLPHVVPHPFALYTNGL 60

Query: 65 ITDEFLKD--KPSFSSIFSEFWDFFNEQNAEWIAHN 98
                 D     +  + +      +   + ++ +N
Sbjct: 61 SIGRLTDDGLPSHYVMVQTIRRKLLSWSPSIFVGYN 96


>gi|115524481|ref|YP_781392.1| exodeoxyribonuclease I [Rhodopseudomonas palustris BisA53]
 gi|115518428|gb|ABJ06412.1| Exodeoxyribonuclease I subunit C [Rhodopseudomonas palustris
           BisA53]
          Length = 490

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 32/111 (28%), Gaps = 4/111 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  + FD ETTGL    D+I+   A+   +       F+V      R           + 
Sbjct: 1   MGFVFFDTETTGLRHGFDQIVHFAAIRTDNDLNETDRFEV----RSRLLPHVVPHPSALR 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              L  +          ++         +A +    VG+ +          
Sbjct: 57  TNRLSIERLIDGTLPSHYEMVRAIQRTLLAWSPSIFVGYNSIRFDEEMLRH 107


>gi|220920536|ref|YP_002495837.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
 gi|219945142|gb|ACL55534.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
          Length = 189

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 8/176 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR +  D ET   + + D    +G   + D     R     + P   + SP  +++HGI 
Sbjct: 1   MRTLAIDFET--ANERRDSACAVGLAWIEDGRVVRRE-ARLIRPAEMRFSPFNVRVHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E + D P F++  + F        A  +AHNA FD+G + A L        D + +   
Sbjct: 58  PEDVADAPDFAAAMAPFLPEIAG--ALVLAHNASFDIGVLAAALAACGLPQPDYTSLCTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
               R+     R  L +L  R GI       H A  D+ + ++V +  M      +
Sbjct: 116 QLARRQWPGQERYRLPALAARLGIAF---RHHDAGEDAFVCAEVALAAMREAGAPD 168


>gi|116051228|ref|YP_789941.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296388274|ref|ZP_06877749.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAb1]
 gi|115586449|gb|ABJ12464.1| putative nuclease [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 208

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 60/168 (35%), Gaps = 3/168 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I  D+ETT LD +   ++ IGAV +           ++++ P       E++++H +   
Sbjct: 33  ISLDLETTSLDPRRADVLSIGAVLVRRGKLVMGERLELYVEPPP-SLDAESIRIHKLRRA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIIDTL 127
            L+ +        +   F  ++       +     +     +L                 
Sbjct: 92  DLEGQLQLEQALRQLLAFIGDRPLLGYYLSFDVAVLNRHLRQLFDRQLHNPSIEISSLYH 151

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               R  P +  DL        + +    +H AL D+  ++ ++++++
Sbjct: 152 RKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLL 199


>gi|330873568|gb|EGH07717.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 206

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 8  RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          R  V D ETTG+   +  R  EI  V +         FQ  +   G +       L GI+
Sbjct: 3  RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIV-ELFQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67 DEFLKDKP 74
          +  ++  P
Sbjct: 61 NNMIRTAP 68


>gi|55822780|ref|YP_141221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus thermophilus CNRZ1066]
 gi|55738765|gb|AAV62406.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 828

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 76/181 (41%), Gaps = 8/181 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K+  +  + D+E T   S    II++G V + +    +  F   + P+ +K     +
Sbjct: 1   MSEKSTNKYAIVDLEATSASS-TACIIQVGIVIMQNGRVIDE-FASDVNPH-QKLDNHIV 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I    ++   +    ++AHN KFD   +        +     
Sbjct: 58  HLTGITDQQLSQAPDFSEIARTIFELIED--CIFVAHNVKFDANLLA--EALFMEGFELR 113

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  +DT+ +A+  +P+      S   R  + +     H A+ D+     + + +M   + 
Sbjct: 114 TPRVDTVELAQVFYPTLEQYNLSYLSRV-LNLDLAQAHTAIEDARATGKLLLHLMDKIAS 172

Query: 181 I 181
           +
Sbjct: 173 L 173


>gi|299142345|ref|ZP_07035477.1| exonuclease [Prevotella oris C735]
 gi|298576067|gb|EFI47941.1| exonuclease [Prevotella oris C735]
          Length = 162

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 7/152 (4%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+     D ET   +++   +  +G V + D    +R F   + P     +    ++HG+
Sbjct: 1   MKDFAAIDFET--ANNERTSVCSVGLVVMRDGKIADR-FYSLIHPEPDYYTYWNTRVHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T       P F  ++ +        N   +AHN  FD   + A  +    D  D S    
Sbjct: 58  TQADTNHAPIFPEVWCKVEPLI--VNLPLVAHNKAFDESCLKAVFRCYQMDYPDYSFYC- 114

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSK 157
           TL+ +RR  P   ++L+ +  R G  +++   
Sbjct: 115 TLAQSRRVWPQGHHNLDIIAARCGYDLTNHHH 146


>gi|290580273|ref|YP_003484665.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025]
 gi|254997172|dbj|BAH87773.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025]
          Length = 842

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 81/174 (46%), Gaps = 8/174 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K   +  V D+E TG    +  II++G V + +     +T+   + P+ +  S   +
Sbjct: 23  MTEKKTRKYAVVDLEATGASH-SASIIQVGIVIIENEQII-QTYTTDVNPH-KPLSKAII 79

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GITD  L+  P FS + ++ +   ++    ++AHN KFD   +   L     + L  
Sbjct: 80  RLTGITDAQLQQAPDFSEVAADIYHLIDD--CVFVAHNVKFDANLLAEHLFLEGFELL-- 135

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  +DT+ +A+  +P+             + I     H A+ D+   +++++K+
Sbjct: 136 TPRVDTVELAQVFYPTFEKYSL-GNLTELLKIDLSDAHTAIADAKATAELFLKL 188


>gi|294791718|ref|ZP_06756866.1| putative exonuclease family protein [Veillonella sp. 6_1_27]
 gi|294456948|gb|EFG25310.1| putative exonuclease family protein [Veillonella sp. 6_1_27]
          Length = 327

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 25/205 (12%)

Query: 7   MRKIVFDIE--------------T----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           M  IVFD+E              T    TG       II+IGAV+L +       F +F+
Sbjct: 1   MNYIVFDLEWNQPYSNDISFMKRTKMPLTG------EIIQIGAVKLNEKMDIIDHFTMFI 54

Query: 49  CPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            P    +      +L GIT   L     F +    F  +  ++       +    +   N
Sbjct: 55  KPQYLTRMHKHVRELTGITTHELNHGVPFKTAMQYFQKWCGDEYMLLSWGSDDILILREN 114

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             L ++     D       +   +R   + +  +    +   I+  H S H AL D+   
Sbjct: 115 LMLHKMKALSYDQWVDAQMIYSYQRYGTNQQYSVAHAMENLNISTEHLSAHNALHDAVFT 174

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRF 192
           + +   + +    +++     E   
Sbjct: 175 AHICQSLDIAQGILHYDLIRKESSN 199


>gi|182418640|ref|ZP_02949917.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521]
 gi|237668503|ref|ZP_04528487.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377502|gb|EDT75056.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521]
 gi|237656851|gb|EEP54407.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 308

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 5/150 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      IG V + +     +     + P   +  P  + +HGI 
Sbjct: 1   MDYIAIDFET--ANEKRSSPCSIGIVVVKNSEVVEKI-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++++P F  I+     +F+       AHNA FD+  +   ++  N +P+    I   
Sbjct: 58  PGMVENEPEFDEIWKRIKGYFDNGFVI--AHNASFDISVLRRTMELYNIEPVSFKYICTM 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156
                       + LN++ +  G    H  
Sbjct: 116 KLSKNFYPQIENSKLNTVNRFLGYEFDHHD 145


>gi|254229568|ref|ZP_04922981.1| DNA polymerase III, alpha subunit [Vibrio sp. Ex25]
 gi|151937941|gb|EDN56786.1| DNA polymerase III, alpha subunit [Vibrio sp. Ex25]
          Length = 226

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 55/189 (29%), Gaps = 21/189 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +      I+ D ETTGL +    I+E  A+               + P       +A 
Sbjct: 22  MKKLPTENAIIIDTETTGLGAD-AEIVEFTAICANSGEVIVDE---LVKPTC-SIPADAT 76

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI----------------AHNAKFDVG 104
            +HGIT+E +KD P F  +FS  +          I                  NA +   
Sbjct: 77  AIHGITNEDVKDAPDFHLMFSNRFLPLLNGRPIIIYNSDFDTRLIIQSLDKHCNAAYVQS 136

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
             +   +                             L + C +  + +S    H AL D 
Sbjct: 137 VHDLFFKFCVPQCAMLWYAEFYGVWNEYHEDYKWQSLTNACAQQHVDVSDLIAHRALADC 196

Query: 165 HLLSDVYIK 173
            +   +   
Sbjct: 197 EMTRRLIHA 205


>gi|108802442|ref|YP_642638.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
 gi|119855268|ref|YP_935871.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
 gi|108772861|gb|ABG11582.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
 gi|119697985|gb|ABL95056.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
          Length = 193

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 21/58 (36%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +V D+ET+G D    RI+ + A+ +     T       L P       +   L    
Sbjct: 7  FVVVDVETSGFDPHTARILSVAALVVTTNGVTTTALHTLLDPGVDPGPTDIHGLTTAM 64


>gi|313808696|gb|EFS47150.1| exonuclease [Propionibacterium acnes HL087PA2]
          Length = 210

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 9   KIVFDIET----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  D ET     G+ +      ++  V++LD    +R     + P    +S E   LHG
Sbjct: 43  FVAVDFETANRMGGVSA-----CQVAMVKVLDGQIVDR-LNTLIRPPKGWDSFEFTYLHG 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+   + D P + +I      F +   A   AHNA FD        +      L      
Sbjct: 97  ISAADVADAPGWINIADTVSHFVDG--ATVYAHNAAFDSRVWRQLDEHFGTTTLPAPFFC 154

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +   A+R  P   N                + H A  D+   + +  ++      
Sbjct: 155 -SYRTAQRLIPGLPNYKLPTVLHACAPNYQLNHHRADSDAKACALIVCELQRRAQT 209


>gi|323343969|ref|ZP_08084196.1| exonuclease [Prevotella oralis ATCC 33269]
 gi|323095788|gb|EFZ38362.1| exonuclease [Prevotella oralis ATCC 33269]
          Length = 165

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 5/168 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
                D ET   ++    +  +G V + D   T  ++   +CP     +     +HG+T 
Sbjct: 3   NFAAIDFET--ANAARTSVCSVGMVIVEDGEIT-DSYYHLICPLPNYYTLWTTAVHGLTF 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E     P+F  +++E       +    +AHN  FD   + A  +       D       L
Sbjct: 60  EDTAGAPTFPDVWAEIAPKI--RYLPLVAHNKAFDESCLKAVFKAYGMQYPDYKFYCTLL 117

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              R        +            S    H AL D+   + + +K++
Sbjct: 118 GARRTFRKGMLPNYQLQTVAQYCGYSLSHHHHALADAEACAHIALKIL 165


>gi|289425017|ref|ZP_06426796.1| exonuclease [Propionibacterium acnes SK187]
 gi|289427636|ref|ZP_06429348.1| exonuclease [Propionibacterium acnes J165]
 gi|295131251|ref|YP_003581914.1| exonuclease [Propionibacterium acnes SK137]
 gi|289154716|gb|EFD03402.1| exonuclease [Propionibacterium acnes SK187]
 gi|289159127|gb|EFD07319.1| exonuclease [Propionibacterium acnes J165]
 gi|291376299|gb|ADE00154.1| exonuclease [Propionibacterium acnes SK137]
 gi|313763263|gb|EFS34627.1| exonuclease [Propionibacterium acnes HL013PA1]
 gi|313773241|gb|EFS39207.1| exonuclease [Propionibacterium acnes HL074PA1]
 gi|313793400|gb|EFS41458.1| exonuclease [Propionibacterium acnes HL110PA1]
 gi|313801125|gb|EFS42391.1| exonuclease [Propionibacterium acnes HL110PA2]
 gi|313810334|gb|EFS48050.1| exonuclease [Propionibacterium acnes HL083PA1]
 gi|313812157|gb|EFS49871.1| exonuclease [Propionibacterium acnes HL025PA1]
 gi|313814708|gb|EFS52422.1| exonuclease [Propionibacterium acnes HL059PA1]
 gi|313817876|gb|EFS55590.1| exonuclease [Propionibacterium acnes HL046PA2]
 gi|313819789|gb|EFS57503.1| exonuclease [Propionibacterium acnes HL036PA1]
 gi|313823447|gb|EFS61161.1| exonuclease [Propionibacterium acnes HL036PA2]
 gi|313824920|gb|EFS62634.1| exonuclease [Propionibacterium acnes HL063PA1]
 gi|313828254|gb|EFS65968.1| exonuclease [Propionibacterium acnes HL063PA2]
 gi|313830174|gb|EFS67888.1| exonuclease [Propionibacterium acnes HL007PA1]
 gi|313833097|gb|EFS70811.1| exonuclease [Propionibacterium acnes HL056PA1]
 gi|313838091|gb|EFS75805.1| exonuclease [Propionibacterium acnes HL086PA1]
 gi|314914476|gb|EFS78307.1| exonuclease [Propionibacterium acnes HL005PA4]
 gi|314917800|gb|EFS81631.1| exonuclease [Propionibacterium acnes HL050PA1]
 gi|314919473|gb|EFS83304.1| exonuclease [Propionibacterium acnes HL050PA3]
 gi|314925898|gb|EFS89729.1| exonuclease [Propionibacterium acnes HL036PA3]
 gi|314930232|gb|EFS94063.1| exonuclease [Propionibacterium acnes HL067PA1]
 gi|314957046|gb|EFT01152.1| exonuclease [Propionibacterium acnes HL027PA1]
 gi|314957661|gb|EFT01764.1| exonuclease [Propionibacterium acnes HL002PA1]
 gi|314960727|gb|EFT04828.1| exonuclease [Propionibacterium acnes HL002PA2]
 gi|314963399|gb|EFT07499.1| exonuclease [Propionibacterium acnes HL082PA1]
 gi|314968946|gb|EFT13044.1| exonuclease [Propionibacterium acnes HL037PA1]
 gi|314972968|gb|EFT17064.1| exonuclease [Propionibacterium acnes HL053PA1]
 gi|314975485|gb|EFT19580.1| exonuclease [Propionibacterium acnes HL045PA1]
 gi|314979437|gb|EFT23531.1| exonuclease [Propionibacterium acnes HL072PA2]
 gi|314984227|gb|EFT28319.1| exonuclease [Propionibacterium acnes HL005PA1]
 gi|314986027|gb|EFT30119.1| exonuclease [Propionibacterium acnes HL005PA2]
 gi|314988810|gb|EFT32901.1| exonuclease [Propionibacterium acnes HL005PA3]
 gi|315077249|gb|EFT49311.1| exonuclease [Propionibacterium acnes HL053PA2]
 gi|315079928|gb|EFT51904.1| exonuclease [Propionibacterium acnes HL078PA1]
 gi|315083258|gb|EFT55234.1| exonuclease [Propionibacterium acnes HL027PA2]
 gi|315086971|gb|EFT58947.1| exonuclease [Propionibacterium acnes HL002PA3]
 gi|315089896|gb|EFT61872.1| exonuclease [Propionibacterium acnes HL072PA1]
 gi|315096775|gb|EFT68751.1| exonuclease [Propionibacterium acnes HL038PA1]
 gi|315097845|gb|EFT69821.1| exonuclease [Propionibacterium acnes HL059PA2]
 gi|315100750|gb|EFT72726.1| exonuclease [Propionibacterium acnes HL046PA1]
 gi|315109298|gb|EFT81274.1| exonuclease [Propionibacterium acnes HL030PA2]
 gi|327325340|gb|EGE67145.1| putative DNA polymerase III epsilon subunit [Propionibacterium
           acnes HL096PA2]
 gi|327325497|gb|EGE67300.1| putative DNA polymerase III epsilon subunit [Propionibacterium
           acnes HL096PA3]
 gi|327443771|gb|EGE90425.1| exonuclease [Propionibacterium acnes HL043PA1]
 gi|327449167|gb|EGE95821.1| exonuclease [Propionibacterium acnes HL043PA2]
 gi|327449503|gb|EGE96157.1| exonuclease [Propionibacterium acnes HL013PA2]
 gi|327451349|gb|EGE98003.1| exonuclease [Propionibacterium acnes HL087PA3]
 gi|327451673|gb|EGE98327.1| exonuclease [Propionibacterium acnes HL092PA1]
 gi|327452136|gb|EGE98790.1| exonuclease [Propionibacterium acnes HL083PA2]
 gi|328752391|gb|EGF66007.1| exonuclease [Propionibacterium acnes HL087PA1]
 gi|328755047|gb|EGF68663.1| exonuclease [Propionibacterium acnes HL025PA2]
 gi|328755908|gb|EGF69524.1| exonuclease [Propionibacterium acnes HL020PA1]
 gi|328761056|gb|EGF74607.1| putative DNA polymerase III epsilon subunit [Propionibacterium
           acnes HL099PA1]
 gi|332676124|gb|AEE72940.1| putative DNA polymerase III epsilon subunit [Propionibacterium
           acnes 266]
          Length = 210

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 9   KIVFDIET----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  D ET     G+ +      ++  V++LD    +R     + P    +S E   LHG
Sbjct: 43  FVAVDFETANRMGGVSA-----CQVAMVKVLDGQIVDR-LNTLIRPPKGWDSFEFTYLHG 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+   + D P + +I      F +   A   AHNA FD        +      L      
Sbjct: 97  ISAADVADAPGWINIADTVSHFVDG--ATVYAHNAAFDSRVWRQLDEHFGTTTLPAPFFC 154

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +   A+R  P   N                + H A  D+   + +  ++      
Sbjct: 155 -SYRTAQRLIPGLPNYKLPTVLHACAPNYQLNHHRADSDAEACALIVCELQRRAQT 209


>gi|164686248|ref|ZP_02210278.1| hypothetical protein CLOBAR_02686 [Clostridium bartlettii DSM
           16795]
 gi|164601850|gb|EDQ95315.1| hypothetical protein CLOBAR_02686 [Clostridium bartlettii DSM
           16795]
          Length = 174

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 17/178 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD------YSKTNRTFQVFLCPNGRK 54
           M + N  + IV D+ETTGLD  +      G   +         +K  R +   + P G  
Sbjct: 1   MNKYNDDKYIVVDLETTGLDPFS------GCEIIEIGITEIVNNKIGRNYSRLVKPKGI- 53

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
                  +  IT++ ++D  S  ++   F  +  +      AHNAKFD+ F+N  L  + 
Sbjct: 54  IPSHITNITSITNDMVEDAESLETVLPNFRKYVGDTTII--AHNAKFDLKFLNYYLDLLG 111

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            + ++       +    + +      L + C  Y I   H   H A  D+   + +++
Sbjct: 112 LEKINNHICTLEMLKRCKSYKGKNKKLETACNYYNIVNEHA--HRANSDTLATAKLFL 167


>gi|223933999|ref|ZP_03625955.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis
           89/1591]
 gi|223897336|gb|EEF63741.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis
           89/1591]
          Length = 822

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E TG  +   +II+IG V + +      ++   + P           L GITD
Sbjct: 12  RYAVVDLEATGTGTD-AKIIQIGIVLVENGEII-DSYATDINP-YELLDDHIKNLTGITD 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
           + L   P F  + S  +D   +  A ++AHN KFD  
Sbjct: 69  QQLSQAPDFGQVASTIYDMIGD--AIFVAHNVKFDAN 103


>gi|296876164|ref|ZP_06900218.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit
           [Streptococcus parasanguinis ATCC 15912]
 gi|296432875|gb|EFH18668.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit
           [Streptococcus parasanguinis ATCC 15912]
          Length = 817

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 84/187 (44%), Gaps = 13/187 (6%)

Query: 1   MIRKNKMRKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R+ + +  + D+E T  G ++K   II++G V + D   T ++++  + P+ R     
Sbjct: 1   MTRQKR-KYAIVDLEATSAGSNAK---IIQVGIVIIEDGRIT-QSYETDVNPHER-LDEH 54

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             +L G+TD  L+  P F+ +  E ++   +  A ++AHN KFD   +        +   
Sbjct: 55  IKQLTGLTDARLRKAPEFAQVAKEIFELIED--AVFVAHNVKFDANLLA--EALFWEGFE 110

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +  IDT+ +++  +P+             + I     H AL D+   + + +K+    
Sbjct: 111 LTTPRIDTVELSQIFYPTLERYNL-GALAAELEIELHHAHSALADAMATAQLLLKLREKI 169

Query: 179 SQINFGF 185
           + +  G 
Sbjct: 170 ASLPRGL 176


>gi|218457859|ref|YP_002418864.1| putative DEDDH exonuclease [Pseudomonas phage SN]
 gi|218379127|emb|CAT99715.1| putative DEDDH exonuclease [Pseudomonas phage SN]
          Length = 184

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 61/175 (34%), Gaps = 10/175 (5%)

Query: 7   MRKIVFDIETTGLDS-------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   V+D ETTGL         K  RIIE   V        +     F+C  G       
Sbjct: 1   MIFAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGEKILDEV--EFICNPGIVIEEII 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+ G+ +E L   PSF     +  DF   +    IAHN  FD   +  +L R      +
Sbjct: 59  TKITGLKNEDLVKHPSFLDQRHKVRDF-FSRADANIAHNLPFDKFMLTCDLARGKLGLEE 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +     +           + +            +  KH AL D  LL +V  +M
Sbjct: 118 VNFPSLDICTVEESARLFGHRMRLQHLYEHYCGPYVQKHRALDDVRLLHEVCKRM 172


>gi|118619457|ref|YP_907789.1| DNA polymerase III subunit epsilon [Mycobacterium ulcerans Agy99]
 gi|118571567|gb|ABL06318.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium ulcerans
           Agy99]
          Length = 329

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 7/201 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G    + R+I + A+ L        +    L P G    P    +HG+T   L
Sbjct: 18  VVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGG---DPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D+P F+ I  +  +         +AHN  FD  F+ AE +  + +    S +       
Sbjct: 75  EDQPQFADIVGDLTELLRG--RTLVAHNVAFDYSFLAAEAELTDAELPVDSVMCTVELAR 132

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R +       L +L   +G+T      H A  D+ +LS +    +    + +     +  
Sbjct: 133 RLELGIDNLRLETLAAHWGVT--QERPHDAFDDALVLSGILAPALQRARERDVWLPIHPV 190

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
              +     V +  L      
Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211


>gi|153821463|ref|ZP_01974130.1| exonuclease family [Vibrio cholerae B33]
 gi|229509131|ref|ZP_04398618.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
           [Vibrio cholerae B33]
 gi|229608803|ref|YP_002879451.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Vibrio
           cholerae MJ-1236]
 gi|126521063|gb|EAZ78286.1| exonuclease family [Vibrio cholerae B33]
 gi|229353888|gb|EEO18823.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
           [Vibrio cholerae B33]
 gi|229371458|gb|ACQ61881.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Vibrio
           cholerae MJ-1236]
          Length = 301

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 82/238 (34%), Gaps = 17/238 (7%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSK-TNRTFQVFLCPNGRKNSP 57
           +  M  ++ D ETTGL ++++ IIE+G V++L                ++  P G+    
Sbjct: 49  EQPM--VLLDTETTGLSAEDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDP-GKPIPE 105

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              +L GITD+ ++ +    S+ + +       +   +AHNA+FD  F       +    
Sbjct: 106 LITELTGITDDMVQGQHIDDSLVASW----LSDDPLVVAHNAQFDRPFFEKRFAALGHLS 161

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              S           +       L  L   Y    +           HLL +    ++  
Sbjct: 162 WACSASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSE 221

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231
             +     +     F  ++                +K  +  I+++EL +    +  L
Sbjct: 222 ADRRTVLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279


>gi|71737285|ref|YP_276026.1| ribonuclease T [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257486623|ref|ZP_05640664.1| ribonuclease T [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289624955|ref|ZP_06457909.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289650468|ref|ZP_06481811.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488734|ref|ZP_07006763.1| Ribonuclease T [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|123635391|sp|Q48F11|RNT_PSE14 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|71557838|gb|AAZ37049.1| ribonuclease T [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298156807|gb|EFH97898.1| Ribonuclease T [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|320325627|gb|EFW81689.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327089|gb|EFW83103.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330867245|gb|EGH01954.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330879065|gb|EGH13214.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330889564|gb|EGH22225.1| ribonuclease T [Pseudomonas syringae pv. mori str. 301020]
 gi|331010105|gb|EGH90161.1| ribonuclease T [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 225

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV +      +     T+   + P  G      AL+  G
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +       + A  + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    R  H A  D+   ++++  ++ 
Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212

Query: 177 GGSQIN 182
              ++ 
Sbjct: 213 RWKEMG 218


>gi|315224304|ref|ZP_07866138.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga
           ochracea F0287]
 gi|314945694|gb|EFS97709.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga
           ochracea F0287]
          Length = 442

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 7/175 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I +I   +   +  T++ F   + P  R       KL GI ++
Sbjct: 2   YAILDIETTGGKYNEEGITDIAIYQFNGHEITDQ-FISLINPE-RPIQEFVTKLTGINNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P F  +     +     +   + HNA FD   +  E +R+  D +  +     LS
Sbjct: 60  MLRNAPKFYEVAKRIVE--ITTDCIIVGHNAAFDYRILQTEFRRLGYDFVRTTLCTVELS 117

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                +  S +          + I    +H A  D+     ++  ++   ++ + 
Sbjct: 118 ERLIPNKESYSL---GKLVRSLGIPVSDRHRASGDALATLKLFKYLLEKDTKKDI 169


>gi|291548714|emb|CBL24976.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Ruminococcus torques L2-14]
          Length = 168

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 6/168 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ + FDIE+TGLD   D I+++  +   +       F  ++     K   EA K++ I+
Sbjct: 1   MK-VFFDIESTGLDPVRDEILQLSIINENEEVL----FSDYIRLVRHKTWNEAEKINHIS 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +KDK +F S   E      +Q  E IA+NA FD+ F+ A    +   P+    I  +
Sbjct: 56  PEMVKDKQTFESRKQEIQK-IFDQATELIAYNANFDISFLKAVGIVLPDVPISDPMIDFS 114

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                            L             H +L D      VY KM
Sbjct: 115 FVYREYSEKYGIFKWQKLVVAARYYGYEFDAHDSLEDIKATKFVYDKM 162


>gi|183985197|ref|YP_001853488.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium marinum M]
 gi|183178523|gb|ACC43633.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium marinum M]
          Length = 329

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 74/201 (36%), Gaps = 7/201 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G    + R+I + A+ L        +    L P      P    +HG+T   L
Sbjct: 18  VVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPG---VDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D+P F+ I  +  +         +AHN  FD  F+ AE +  + +    S +       
Sbjct: 75  EDQPQFADIVGDLTELLRG--RTLVAHNVAFDYSFLAAEAELADAELPVDSVMCTVELAR 132

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R +       L +L   +G+T      H A  D+ +LS +    +    + +     +  
Sbjct: 133 RLELGIDNLRLETLAAHWGVT--QERPHDAFDDALVLSGILAPALQRARERDVWLPIHPV 190

Query: 191 RFFKEEKKTVPNISLLKRDKP 211
              +     V +  L      
Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211


>gi|281424653|ref|ZP_06255566.1| exonuclease [Prevotella oris F0302]
 gi|281401241|gb|EFB32072.1| exonuclease [Prevotella oris F0302]
          Length = 162

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 7/152 (4%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+     D ET   +++   +  +G V + D    +R F   + P     +    ++HG+
Sbjct: 1   MKDFAAIDFET--ANNERTSVCSVGLVVIRDGEIADR-FYSLIHPEPDYYTYWNTRVHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T       P F  ++ +      +     +AHN  FD   + A  +    D  D S    
Sbjct: 58  TQADTNHAPIFPEVWRKVESLIVD--LPLVAHNKAFDESCLKAVFRCYQMDYPDYSFYC- 114

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSK 157
           TL+ +RR  P   ++LN +  R G   ++   
Sbjct: 115 TLAQSRRVWPQGHHNLNIIAARCGYDFTNHHH 146


>gi|93007423|ref|YP_579187.1| DNA polymerase III [Streptomyces phage mu1/6]
 gi|90568501|gb|ABD94180.1| DNA polymerase III [Streptomyces phage mu1/6]
          Length = 238

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
          R   FD ETTG+D ++DRI+   AV L+   +   T      P G      A  +HG+
Sbjct: 7  RLCAFDTETTGVDVESDRIVT-AAVLLVGGGQPTETHTWLADP-GIDIPEAASAVHGV 62


>gi|327402957|ref|YP_004343795.1| DNA polymerase III subunit alpha [Fluviicola taffensis DSM 16823]
 gi|327318465|gb|AEA42957.1| DNA polymerase III, alpha subunit [Fluviicola taffensis DSM 16823]
          Length = 1463

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 68/247 (27%), Gaps = 30/247 (12%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL         D     R I+I      +           + P+G     +
Sbjct: 2   FLIFDTETTGLPRDWNAPLTDLDNWPRAIQIAWQLHDELGNLIEAKDYLIRPDGFDIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A ++HGI+ E   ++          ++    ++   +  N  FD+  + AE  R      
Sbjct: 62  AERIHGISTELALEQGQDLEDVIAEFNEVLRKSQFVVGQNIGFDLNIMGAEFLRTQVATN 121

Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                +         +                 +    +   +     H A  D    + 
Sbjct: 122 MHDLPVLDTCTEVTANLCKIPGGRGGKFKLPTLTELHSFLFNVPFGEAHNATADVEATTR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
            + +++          K   + F + +      I  +          +            
Sbjct: 182 CFFELVRREVFTAEELKVELEFFNRFKIANPDFIQPIGLTHLNLKEASA----------- 230

Query: 230 TLGKNAI 236
            L K A+
Sbjct: 231 KLKKQAV 237


>gi|282855067|ref|ZP_06264399.1| exonuclease [Propionibacterium acnes J139]
 gi|282581655|gb|EFB87040.1| exonuclease [Propionibacterium acnes J139]
 gi|314982129|gb|EFT26222.1| exonuclease [Propionibacterium acnes HL110PA3]
 gi|315090368|gb|EFT62344.1| exonuclease [Propionibacterium acnes HL110PA4]
 gi|315093651|gb|EFT65627.1| exonuclease [Propionibacterium acnes HL060PA1]
 gi|315103870|gb|EFT75846.1| exonuclease [Propionibacterium acnes HL050PA2]
 gi|327325415|gb|EGE67219.1| putative DNA polymerase III epsilon subunit [Propionibacterium
           acnes HL103PA1]
          Length = 210

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 13/175 (7%)

Query: 9   KIVFDIET----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  D ET     G+ +      ++  V++ D    +R     + P    +S E   LHG
Sbjct: 43  FVAVDFETANRMGGVSA-----CQVAMVKVCDGQIVDR-LNTLIRPPKGWDSFEFTYLHG 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+   + D PS+++I      F +       AHNA FD        +      L      
Sbjct: 97  ISAADVADAPSWTNIADTVSHFVDG--VTVYAHNAAFDSRVWRQLDEHFGTTTLPAPFFC 154

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +   A+R  P   N                + H A  D+   + +  ++     
Sbjct: 155 -SYRTAQRLIPGLPNYKLPTVLHACAPNYQLNHHRADSDAEACALIVCELQRRAQ 208


>gi|260777448|ref|ZP_05886342.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607114|gb|EEX33388.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 239

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGLDS+ D II IG V    +    N+     + P  ++ + E++ +HGIT 
Sbjct: 49  FLAMDFETTGLDSEQDDIITIGTVPFNLNRIFINQAHHWTVRP-RQQLAEESVIIHGITH 107

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEW 94
             + D P  S ++ +  +    +    
Sbjct: 108 SDILDAPDLSEVYDQVLEQMAGKIMVV 134


>gi|256818923|ref|YP_003140202.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM
           7271]
 gi|256580506|gb|ACU91641.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM
           7271]
          Length = 442

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 7/175 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I +I   +   +  T++ F   + P  R       KL GI ++
Sbjct: 2   YAILDIETTGGKYNEEGITDIAIYQFNGHEITDQ-FISLINPE-RPIQEFVTKLTGINNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P F  +     +     +   + HNA FD   +  E +R+  D +  +     LS
Sbjct: 60  MLRNAPKFYEVAKRIVE--ITTDCIIVGHNAAFDYRILQTEFRRLGYDFVRTTLCTVELS 117

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                +  S +          + I    +H A  D+     ++  ++   ++ + 
Sbjct: 118 ERLIPNKESYSL---GKLVRSLGIPVSDRHRASGDALATLKLFKYLLEKDTKKDI 169


>gi|257791384|ref|YP_003181990.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM
           2243]
 gi|257475281|gb|ACV55601.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM
           2243]
          Length = 367

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 76/211 (36%), Gaps = 8/211 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M    FD+ET   + +NDRI  IGAV               + P         +++HGI 
Sbjct: 1   MLYTFFDVET--PNRRNDRICSIGAVVTDQDGTVVEKKSYLVNPES-SFDDINVRIHGIA 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +++  +F  ++ +    F   +   +AHNA+FD+  +   L   +           T
Sbjct: 58  PVDVRNAKTFPELWYDSLSAFFPVDGV-VAHNARFDLSVLTKTLVSYDIPSP-KMSYACT 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS-QINFGF 185
           L ++++        L  +C+  GI       H A  D+     V+  ++       +F  
Sbjct: 116 LDMSKKIDFIGGGKLPHVCEALGIE--LERHHQAESDATACMRVFWTLVGMAGCMPSFIA 173

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                +  K+      +IS   +       +
Sbjct: 174 YEPGAKSCKKSGGRYRSISDKTKAMQWLIPL 204


>gi|220935624|ref|YP_002514523.1| ribonuclease T [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996934|gb|ACL73536.1| ribonuclease T [Thioalkalivibrio sp. HL-EbGR7]
          Length = 216

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 68/187 (36%), Gaps = 13/187 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++++ AV L          ++T    + P  G    P++L+++G
Sbjct: 20  VVVDVETGGFNPRTDALLQVAAVLLRMDPEGQLYRHQTLSFHVQPFEGANLDPKSLEVNG 79

Query: 65  ITDEFLKDKPSF--------SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                        E       + A  + HNA FD+ FI+   +R    
Sbjct: 80  INPWHPLRIAHPEKDALATVFRGVREEMKLNACKRAILVGHNAGFDLSFIHQGAERAGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      ++        +  L    +  G+  S+   H A+ D+   +D++  ++ 
Sbjct: 140 RNPFHPFSSLDTVTLSAMAFGQTVLARAVQAAGMEWSNSEAHSAVYDAEKTADLFCHVIN 199

Query: 177 GGSQINF 183
               +  
Sbjct: 200 RWGPVAM 206


>gi|50843187|ref|YP_056414.1| putative DNA polymerase III epsilon subunit (exonuclease)
           [Propionibacterium acnes KPA171202]
 gi|50840789|gb|AAT83456.1| putative DNA polymerase III epsilon subunit (exonuclease)
           [Propionibacterium acnes KPA171202]
 gi|314924210|gb|EFS88041.1| exonuclease [Propionibacterium acnes HL001PA1]
 gi|314964999|gb|EFT09098.1| exonuclease [Propionibacterium acnes HL082PA2]
 gi|315106149|gb|EFT78125.1| exonuclease [Propionibacterium acnes HL030PA1]
          Length = 236

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 13/175 (7%)

Query: 9   KIVFDIET----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  D ET     G+ +      ++  V++ D    +R     + P    +S E   LHG
Sbjct: 69  FVAVDFETANRMGGVSA-----CQVAMVKVCDGQIVDR-LNTLIRPPKGWDSFEFTYLHG 122

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+   + D PS+++I      F +       AHNA FD        +      L      
Sbjct: 123 ISAADVADAPSWTNIADTVSHFVDG--VTVYAHNAAFDSRVWRQLDEHFGTTTLPAPFFC 180

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +   A+R  P   N                + H A  D+   + +  ++     
Sbjct: 181 -SYRTAQRLIPGLPNYKLPTVLHACAPNYQLNHHRADSDAEACALIVCELQRRAQ 234


>gi|85860590|ref|YP_462792.1| exonuclease [Syntrophus aciditrophicus SB]
 gi|85723681|gb|ABC78624.1| exonuclease [Syntrophus aciditrophicus SB]
          Length = 88

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 3  RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFL 48
          +++  R +V DIETTGL  K    II+IGAV L +   +++ FQ  +
Sbjct: 27 KESDQRIVVLDIETTGLIPKRGHCIIKIGAVALKNNEISSK-FQNLI 72


>gi|261749409|ref|YP_003257094.1| bifunctional DNA polymerase III subunit alpha/DNA polymerase III,
           epsilon subunit [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497501|gb|ACX83951.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase
           III, epsilon subunit (dnaQ) fusion protein
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 1435

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 67/213 (31%), Gaps = 17/213 (7%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++ D ETTGL    +          R+++I                  + P+       
Sbjct: 2   YLIVDTETTGLPVNYNFPISNTENWPRVVQIAWQLHDFSGNLVEFKNFIIKPDHYDIPFN 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A K+HGIT+E  +          + +    E++   I HN +FD+  I  E  R  +   
Sbjct: 62  AFKIHGITNEIAEKNGEDLIFVLKEFKKSFEKSKYLIGHNLEFDIKVIECEFFRKKEQIS 121

Query: 119 DPSRIIDTLSIARRKHPS-------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              + I         +          +    +              H A  D    +  +
Sbjct: 122 FKRKKILDTKEVSVSYCQLPGIRKKFKWPTLTELYYKLFGTKLSHSHNAANDVKATARCF 181

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204
           ++++  G   +   K +E+   +  K     IS
Sbjct: 182 LELLRLGIISSENLKIDENFILQFRKLHQSTIS 214


>gi|311232722|gb|ADP85576.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
          vulgaris RCH1]
          Length = 251

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPN 51
           +V D+E TGL  + D II +  V +        R F+  + P+
Sbjct: 48 FVVLDLEMTGLVPRRDAIIAVAGVTMRGERILAGRCFEAKMRPH 91


>gi|120603536|ref|YP_967936.1| exonuclease, RNase T and DNA polymerase III [Desulfovibrio
          vulgaris DP4]
 gi|120563765|gb|ABM29509.1| Exonuclease, RNase T and DNA polymerase III [Desulfovibrio
          vulgaris DP4]
          Length = 251

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPN 51
           +V D+E TGL  + D II +  V +        R F+  + P+
Sbjct: 48 FVVLDLEMTGLVPRRDAIIAVAGVTMRGERILAGRCFEAKMRPH 91


>gi|46578859|ref|YP_009667.1| exonulcease [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448271|gb|AAS94926.1| exonulcease, putative [Desulfovibrio vulgaris str. Hildenborough]
          Length = 244

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPN 51
           +V D+E TGL  + D II +  V +        R F+  + P+
Sbjct: 41 FVVLDLEMTGLVPRRDAIIAVAGVTMRGERILAGRCFEAKMRPH 84


>gi|303240250|ref|ZP_07326769.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
           cellulolyticus CD2]
 gi|302592160|gb|EFL61889.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
           cellulolyticus CD2]
          Length = 211

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 7   MRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEA 59
           M  I++D+E   L+SK       + IIEIGA++L    K   TFQ F+ P+  +K  P  
Sbjct: 1   MNYIIYDLE---LNSKPFKSKLPNEIIEIGAIKLDSDLKEIDTFQAFIKPHYFKKLFPVV 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +   IT E + +  SF  I S F  +  + +      +       +N +  +I    L 
Sbjct: 58  KRKTKITQEDVNNAESFKEIISSFRKWIGDNSILISWGHDDVHHLLVNCKNNKITTSWLK 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +  +     +  + P+ +                 S H AL D+   + ++ K      
Sbjct: 118 KNIDLQKQVSSIYEVPAGQRYSLENAINVLEIDVGESFHRALADARYTAQIFSK---TFD 174

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214
           +++     + +   K   K    ++   + +    
Sbjct: 175 RLDLSVFNSLEVKKKSIPKPKAIVAEKTKIELSVI 209


>gi|290968369|ref|ZP_06559909.1| exonuclease [Megasphaera genomosp. type_1 str. 28L]
 gi|290781556|gb|EFD94144.1| exonuclease [Megasphaera genomosp. type_1 str. 28L]
          Length = 221

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 7   MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSP 57
           M+ +  D E   +D +           IIEIGAV+L +  K    ++ ++CP    + + 
Sbjct: 1   MKAVFVDFEMNPIDRRHQEARRICQGEIIEIGAVKLDEDGKEIGAYKEYICPEYTSQMNA 60

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
               L GIT + L     F ++F+ F  + NE         A  +  +     +   K  
Sbjct: 61  TCQALTGITMDMLTPAAHFQTVFAHFLAWCNEDAPNAYEMYAWSENDWHQLTCEMRLKQS 120

Query: 118 LDPSRIIDTLSIARRKHPSSRND 140
                 I  +    +       +
Sbjct: 121 DMNDPQIRWMLDHWQNFQQIFCN 143


>gi|237649440|ref|ZP_04523692.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae CCRI 1974]
          Length = 831

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 10/186 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +++    R +V D+E T   SK  +II++G V + D       +   + P+         
Sbjct: 15  IMKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIK 71

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     
Sbjct: 72  ELTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELR 127

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +  +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +
Sbjct: 128 NPRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMT 185

Query: 180 QINFGF 185
           Q+  G 
Sbjct: 186 QLPKGL 191


>gi|301301275|ref|ZP_07207430.1| exonuclease [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851151|gb|EFK78880.1| exonuclease [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 177

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 5/175 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K      +    + +       F   + P+    S   +++HGIT
Sbjct: 1   MNFVAIDFET--ANPKRYSACSLALTVVKNNQ-IADQFYSLIKPDT-DFSWRNIQVHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ +++ PSF  ++    +F    N   +AHNA FD   +   L+  +        +   
Sbjct: 57  EKQVQNAPSFPELWPHIQNF-FTPNNLIVAHNASFDSSVLLRTLEHYDITLPHYQLLDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +  +       + L+++C    I + H         +     +Y   + G  Q+
Sbjct: 116 RTSKKFFKDLENHKLDTICNNLNIDLKHHHNALFDSTACAEILLYQANLFGEDQL 170


>gi|187777769|ref|ZP_02994242.1| hypothetical protein CLOSPO_01361 [Clostridium sporogenes ATCC
           15579]
 gi|187774697|gb|EDU38499.1| hypothetical protein CLOSPO_01361 [Clostridium sporogenes ATCC
           15579]
          Length = 286

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 7   MRKIVFDIETTGL-DSKN---------------DRIIEIGAVELLDYSKTNRTFQVFLCP 50
           M  I+FD+E     + KN               D IIEIGA++L D  +   +F+V++ P
Sbjct: 1   MNYIIFDLEWNSFRNVKNHINYYKKFNKKTRFFDEIIEIGAMKLNDELECVDSFRVYIKP 60

Query: 51  N-GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN--AEWIAHNAKFDVGFIN 107
              ++ +P  ++L GI +E LK    F      F ++  +      W   + K     I 
Sbjct: 61  TIYKELNPRIIELTGINNEDLKYGFDFKKALKHFKEWIGKDYILCSWCDSDIKVLKKNIE 120

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                   +      I              R  L+ +     I  S  + H AL DS L 
Sbjct: 121 YYNPNYKVESFLVPYIDIQKYCCEILEYGRRVSLHDIISTENIVPSTDTFHQALDDSKLT 180

Query: 168 SDVYIKM 174
            DV+ KM
Sbjct: 181 VDVFRKM 187


>gi|170752204|ref|YP_001783349.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659331|gb|ACB28381.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
          Length = 298

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 60/226 (26%), Gaps = 7/226 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHGI 65
           V D+ETTG D   D +IE+G ++      + R ++V      L    +    E  +L GI
Sbjct: 43  VVDVETTGTDFGTDEVIELGILKFEYG-ASGRIYRVLDTLNQLQEPRKPIPVEITRLTGI 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRII 124
           TD  +  +    +  +          A   + + +           +             
Sbjct: 102 TDADVAGQRIDDAAVARIAADAAVVIAHNASFDWQMCEPRWPVFREKNWGCSCHQIPWRA 161

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           +     +  +  S         R            A             ++    +    
Sbjct: 162 EGHEGLKLGYLLSDCGFFHRGHRAIDDCHALLALLARPLQASGQLALAALLATARKPTVR 221

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
                     +E           R +  +  + +++++     +  
Sbjct: 222 LWAQGSPIETKELLKARRYRWSGRRRCWYVDLDEDQIEIERTFLSE 267


>gi|326335784|ref|ZP_08201964.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692023|gb|EGD33982.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 1485

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 71/230 (30%), Gaps = 20/230 (8%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL        +D     R ++I         +        + P+G     +
Sbjct: 2   YLIFDTETTGLPRNYNAPISDSENWPRAVQIAWQLHDHKGQLLEHKDFLITPDGFTIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----- 113
           A ++HGI+ E    +        E ++    +    +  N  FD+  + AE  R      
Sbjct: 62  AERIHGISTELATKRGVSIHHVFEEFEKALAKTQYIVGQNIGFDIHIMGAEFYRYGVSSV 121

Query: 114 ----NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                          +   I   +    +    +    +         H A  D    + 
Sbjct: 122 LSKLPVLDTCTELTAELCRIPGGRAGKFKYPNLTELHEFLFGTPFAEAHNATADVEATAR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            + +++  G   +   + +E      ++K +  I L           +++
Sbjct: 182 CFFELLRRGEGFSPS-QVSEQAIRLIQEKYLSPIPLWGLHHINLKVASEK 230


>gi|253751390|ref|YP_003024531.1| ATP-dependent DNA helicase [Streptococcus suis SC84]
 gi|253753291|ref|YP_003026431.1| ATP-dependent DNA helicase [Streptococcus suis P1/7]
 gi|253755878|ref|YP_003029018.1| ATP-dependent DNA helicase [Streptococcus suis BM407]
 gi|251815679|emb|CAZ51270.1| putative ATP-dependent DNA helicase [Streptococcus suis SC84]
 gi|251818342|emb|CAZ56163.1| putative ATP-dependent DNA helicase [Streptococcus suis BM407]
 gi|251819536|emb|CAR45129.1| putative ATP-dependent DNA helicase [Streptococcus suis P1/7]
          Length = 822

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E TG  +   +II+IG V + +      ++   + P           L GITD
Sbjct: 12  RYAVVDLEATGTGTD-AKIIQIGIVLVENGEII-DSYATDINP-YELLDDHIKNLTGITD 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
           + L   P F  + S  +D   +  A ++AHN KFD  
Sbjct: 69  QQLSQAPDFGQVASTIYDMIGD--AIFVAHNVKFDAN 103


>gi|254850923|ref|ZP_05240273.1| exonuclease family [Vibrio cholerae MO10]
 gi|21885332|gb|AAL59738.1| unknown [Vibrio cholerae]
 gi|254846628|gb|EET25042.1| exonuclease family [Vibrio cholerae MO10]
 gi|259156302|gb|ACV96248.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ind4]
          Length = 302

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 82/238 (34%), Gaps = 17/238 (7%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSK-TNRTFQVFLCPNGRKNSP 57
           +  M  ++ D ETTGL ++++ IIE+G V++L                ++  P G+    
Sbjct: 49  EQPM--VLLDTETTGLSAEDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDP-GKPIPE 105

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              +L GITD+ ++ +    S+ + +       +   +AHNA+FD  F       +    
Sbjct: 106 LITELTGITDDMVQGQHIDDSLVASW----LSDDPLVVAHNAQFDRPFFEKRFAALGHLS 161

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              S           +       L  L   Y    +           HLL +    ++  
Sbjct: 162 WACSASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSE 221

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231
             +     +     F  ++                +K  +  I+++EL +    +  L
Sbjct: 222 ADRRAVLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279


>gi|254506426|ref|ZP_05118568.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 16]
 gi|219550600|gb|EED27583.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 16]
          Length = 210

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66
           +  D ETT LD     ++ I A +++ +   T+R F+V L  P    +S   +      
Sbjct: 30 YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSRPFEVRLRAPQSLDSSSVKIHQMRHQ 89


>gi|160932735|ref|ZP_02080124.1| hypothetical protein CLOLEP_01576 [Clostridium leptum DSM 753]
 gi|156867809|gb|EDO61181.1| hypothetical protein CLOLEP_01576 [Clostridium leptum DSM 753]
          Length = 293

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 77/214 (35%), Gaps = 8/214 (3%)

Query: 7   MRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEAL 60
           M  ++ D+E  G  SK      + IIE GAV++ D      TF V + P  G+K S +  
Sbjct: 1   MEFVILDLEWNGTYSKRKSGFFNEIIEFGAVKVNDRLCVEDTFSVVVKPQIGKKLSSKVK 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            L  I+ E L    +++   S+F  F  N     W   +    +            D ++
Sbjct: 61  NLTNISSEELGLGVTYTRAVSKFKKFLGNAVLMTWGTSDILALMENHQYYWGTDRLDYIE 120

Query: 120 PSRIID-TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               +              +  L++  +  GI +     H AL DS L    + ++    
Sbjct: 121 GYVNLQSFCERRVYYERGKQMGLSTAAQLLGIDVQGMEHHRALDDSLLALACFRRLYDEE 180

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
               F    ++D+F+ + +     +  L      
Sbjct: 181 ELKPFFEDASKDQFYDKMRFKTTILCDLSNPLLK 214


>gi|145295430|ref|YP_001138251.1| hypothetical protein cgR_1367 [Corynebacterium glutamicum R]
 gi|140845350|dbj|BAF54349.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 197

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          + +  D+ETTGL     +I+ IG V +      
Sbjct: 14 KLLAVDVETTGLKPHRHQIVSIGWVPINGDVID 46


>gi|62390175|ref|YP_225577.1| DNA polymerase III, epsilon subunit [Corynebacterium glutamicum
          ATCC 13032]
 gi|41325511|emb|CAF19991.1| DNA POLYMERASE III, EPSILON SUBUNIT, PUTATIVE [Corynebacterium
          glutamicum ATCC 13032]
          Length = 197

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          + +  D+ETTGL     +I+ IG V +      
Sbjct: 14 KLLAVDVETTGLKPHRHQIVSIGWVPINGDVID 46


>gi|19552509|ref|NP_600511.1| DNA polymerase III epsilon subunit [Corynebacterium glutamicum
          ATCC 13032]
 gi|21324057|dbj|BAB98682.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
          [Corynebacterium glutamicum ATCC 13032]
          Length = 218

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          + +  D+ETTGL     +I+ IG V +      
Sbjct: 35 KLLAVDVETTGLKPHRHQIVSIGWVPINGDVID 67


>gi|119774662|ref|YP_927402.1| DNA polymerase III subunit epsilon-related 3'-5' exonuclease-like
          protein [Shewanella amazonensis SB2B]
 gi|119767162|gb|ABL99732.1| DNA polymerase III epsilon subunit-related 3'-5' exonuclease-like
          protein [Shewanella amazonensis SB2B]
          Length = 228

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39
          M     M  +  D+E TGLD   D+I+ IG V +     
Sbjct: 37 MAESAPM--LALDLEMTGLDPGRDQILAIGVVPIDGGII 73


>gi|332204813|gb|EGJ18878.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA47901]
          Length = 816

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|332202666|gb|EGJ16735.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA41317]
          Length = 816

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|307127646|ref|YP_003879677.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           pneumoniae 670-6B]
 gi|306484708|gb|ADM91577.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae 670-6B]
          Length = 816

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|303255784|ref|ZP_07341825.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS455]
 gi|303260270|ref|ZP_07346241.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP-BS293]
 gi|303261476|ref|ZP_07347424.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP14-BS292]
 gi|303264144|ref|ZP_07350065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS397]
 gi|303266246|ref|ZP_07352137.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS457]
 gi|303268684|ref|ZP_07354474.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS458]
 gi|301801646|emb|CBW34344.1| putative exonuclease [Streptococcus pneumoniae INV200]
 gi|302597168|gb|EFL64273.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS455]
 gi|302637610|gb|EFL68097.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP14-BS292]
 gi|302638594|gb|EFL69058.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP-BS293]
 gi|302641744|gb|EFL72101.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS458]
 gi|302644176|gb|EFL74432.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS457]
 gi|302646549|gb|EFL76775.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS397]
          Length = 816

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|301793959|emb|CBW36355.1| putative exonuclease [Streptococcus pneumoniae INV104]
          Length = 816

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|225861294|ref|YP_002742803.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230625|ref|ZP_06964306.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255368|ref|ZP_06978954.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503192|ref|YP_003725132.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|225726410|gb|ACO22261.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238787|gb|ADI69918.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           pneumoniae TCH8431/19A]
          Length = 816

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|225856476|ref|YP_002737987.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae P1031]
 gi|225724714|gb|ACO20566.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae P1031]
          Length = 816

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|225858612|ref|YP_002740122.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae 70585]
 gi|225720171|gb|ACO16025.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae 70585]
          Length = 816

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|182683721|ref|YP_001835468.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14]
 gi|182629055|gb|ACB90003.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14]
          Length = 816

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|169833275|ref|YP_001694265.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae Hungary19A-6]
 gi|168995777|gb|ACA36389.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae Hungary19A-6]
 gi|327390159|gb|EGE88502.1| putative dnaQ exonuclease/DinG family helicase [Streptococcus
           pneumoniae GA04375]
          Length = 816

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|168490899|ref|ZP_02715042.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC0288-04]
 gi|221231602|ref|YP_002510754.1| exonuclease [Streptococcus pneumoniae ATCC 700669]
 gi|225854318|ref|YP_002735830.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae JJA]
 gi|183574742|gb|EDT95270.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC0288-04]
 gi|220674062|emb|CAR68575.1| putative exonuclease [Streptococcus pneumoniae ATCC 700669]
 gi|225723482|gb|ACO19335.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae JJA]
          Length = 816

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|168486184|ref|ZP_02710692.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1087-00]
 gi|183570792|gb|EDT91320.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1087-00]
          Length = 816

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|168484461|ref|ZP_02709413.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1873-00]
 gi|172042316|gb|EDT50362.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1873-00]
 gi|332203958|gb|EGJ18025.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA47368]
          Length = 816

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|148985845|ref|ZP_01818939.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP3-BS71]
 gi|148990415|ref|ZP_01821581.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP6-BS73]
 gi|168575465|ref|ZP_02721401.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae MLV-016]
 gi|194397188|ref|YP_002037447.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae G54]
 gi|307067407|ref|YP_003876373.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200]
 gi|147921991|gb|EDK73115.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP3-BS71]
 gi|147924320|gb|EDK75413.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP6-BS73]
 gi|183578476|gb|EDT99004.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae MLV-016]
 gi|194356855|gb|ACF55303.1| Dna polymerase III, epsylon subunit/ATP-dependent helicase DinG
           [Streptococcus pneumoniae G54]
 gi|301799817|emb|CBW32386.1| putative exonuclease [Streptococcus pneumoniae OXC141]
 gi|306408944|gb|ADM84371.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200]
          Length = 816

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|149010565|ref|ZP_01831936.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP19-BS75]
 gi|147765046|gb|EDK71975.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP19-BS75]
          Length = 816

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|149003435|ref|ZP_01828324.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP14-BS69]
 gi|237821000|ref|ZP_04596845.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758618|gb|EDK65616.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP14-BS69]
          Length = 816

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|148997118|ref|ZP_01824772.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP11-BS70]
 gi|147756818|gb|EDK63858.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP11-BS70]
          Length = 816

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|148992472|ref|ZP_01822167.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP9-BS68]
 gi|149007688|ref|ZP_01831305.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP18-BS74]
 gi|168489814|ref|ZP_02714013.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae SP195]
 gi|147760843|gb|EDK67814.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP18-BS74]
 gi|147928789|gb|EDK79802.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP9-BS68]
 gi|183571801|gb|EDT92329.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae SP195]
 gi|332077219|gb|EGI87681.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA17545]
          Length = 816

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|297581761|ref|ZP_06943683.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534168|gb|EFH73007.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 209

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 74/171 (43%), Gaps = 7/171 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD K   ++ I A ++  +   T++ F+V LC   +     ++++H I  
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLC-APQSLDSGSVRIHRIRH 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L D  S      +  +F    N   + ++ ++D   ++   ++    PL    I  + 
Sbjct: 89  QDLHDGLSEKEALIQLIEFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQ 146

Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                  +  P++  DL+       + +  + KH AL D+   + V++++ 
Sbjct: 147 IYHDKLEKHLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIAAALVFVRLT 197


>gi|325297417|ref|YP_004257334.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
 gi|324316970|gb|ADY34861.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
          Length = 183

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 9/172 (5%)

Query: 8   RKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
             I  D ET T    K   I E G   + +      T    + P G   S   +++HGI 
Sbjct: 5   NFIAIDFETAT---RKRASICEAGICVVRNGK-VAETRSWLIRPEGNYYSYWNMQIHGIR 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
               ++ P F  I+++  ++  E     +AHNA FD+G I   LQ  +    D +     
Sbjct: 61  PSDTENAPEFPEIWTKITEYLGE-CPVLVAHNAIFDIGCIRHSLQFYHIKKPDITYYCSL 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            +  +  +                 I +R  H A  D+ + + ++++ +   
Sbjct: 120 RAARKLYNFDCNKLD---YLCDQFEIPYRLHHRAGDDAEMCARLFLREIRDA 168


>gi|303235494|ref|ZP_07322106.1| exonuclease [Prevotella disiens FB035-09AN]
 gi|302484293|gb|EFL47276.1| exonuclease [Prevotella disiens FB035-09AN]
          Length = 183

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 7/170 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             I  D ET    +    I E   + ++   K   T    + P G   +    ++HGIT 
Sbjct: 5   NFIAIDFET--ASNAQAAICE-AGISIVKGGKVVETRSWLVRPEGNAYNYWNTRVHGITA 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +     P F  +++E   +  +     +AHNA FD+G I   L        + +      
Sbjct: 62  KDTAHAPEFPQVWNEIMTYLAD-CPILVAHNAGFDMGCIRRSLAFYGLKTPEITYYCSLR 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +  +                    I +   H A  D+ + + ++++ +  
Sbjct: 121 AARKIYDFECNKLEF---LCQKFEIPYGQHHRAGDDAAMCAHLFLRELKD 167


>gi|261250461|ref|ZP_05943036.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
 gi|260939030|gb|EEX95017.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
          Length = 210

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 75/181 (41%), Gaps = 8/181 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD     ++ I A +++ +   T++ F+V L    +     ++K+H I  
Sbjct: 30  FVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLR-APQSLDSGSVKIHHIRH 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L D         +  +F    N   + ++ ++D   ++   ++    PL    I  + 
Sbjct: 89  QDLADGIDEKQALIQLLEFI--GNRPLVGYHIRYDKKILDLACRKQLGFPLPNPLIEVSQ 146

Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                  +  P++  DL+       + +  ++KH AL D+   + +++++   G   +  
Sbjct: 147 IYHDKLEKHLPNAYFDLSLDAICKHLDLPLQNKHDALQDAIAAALIFVRLT-KGDLPSLN 205

Query: 185 F 185
            
Sbjct: 206 L 206


>gi|88808413|ref|ZP_01123923.1| Exonuclease [Synechococcus sp. WH 7805]
 gi|88787401|gb|EAR18558.1| Exonuclease [Synechococcus sp. WH 7805]
          Length = 272

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 10/167 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++ D ETTGLD+  D+ +E+GA+   + + +        L      N  E++      
Sbjct: 43  RLLIVDTETTGLDADRDQCLEVGAILFSVPHRQVLAQMSCLL--PVDSNPAESINRIPAE 100

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++           +++         +AHNA FD  +       + +        ++ 
Sbjct: 101 VSRVEQP---WGDGLAWFERMMMSADYLVAHNAAFDRQWFGRG--ALPEAKRPWLCTLED 155

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +     ++  +R  +  L   YGI +     H AL D   L++V+ +
Sbjct: 156 IRWPEARNLKARPSVIDLALAYGIPVWSA--HRALTDCIYLAEVFQR 200


>gi|161833722|ref|YP_001597918.1| putative DNA polymerase III subunit alpha (dnaE)/DNA polymerase
           III, epsilon subunit (dnaQ) fusion [Candidatus Sulcia
           muelleri GWSS]
 gi|152206212|gb|ABS30522.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase
           III, epsilon subunit (dnaQ) fusion [Candidatus Sulcia
           muelleri GWSS]
          Length = 1411

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 69/187 (36%), Gaps = 17/187 (9%)

Query: 9   KIVFDIETTGLDSKND------------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
            I+FD ETTGL    D            R++++  V L +  +        + P G +  
Sbjct: 2   YIIFDTETTGLPLPKDFNPPIINIINLPRLVKLSWVLLDEKLQLIELKDYIIKPEGYEIP 61

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
             + K+HGI+ ++  +K    +   E ++   +++   I HN  FD+  + AE  RINK 
Sbjct: 62  FNSTKIHGISTKYAIEKGIKINFVLEEFNLIIKKSNFLIGHNVFFDIKIVCAEFIRINKK 121

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVY 171
                + I         + + +                +       H +  D    +  +
Sbjct: 122 ISFFKKKIIDTKEISINYCAIKMGEKFKWPTLTELYKKLFNDTFIAHDSKSDVLATTKCF 181

Query: 172 IKMMVGG 178
            +++  G
Sbjct: 182 FELLRIG 188


>gi|322373090|ref|ZP_08047626.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C150]
 gi|321278132|gb|EFX55201.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C150]
          Length = 828

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 8/181 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  KN  +  + D+E T   S    II++G V + +    +  F   + P+ +K     +
Sbjct: 1   MSEKNTNKYAIVDLEAT-FASSMASIIQVGIVIMQNGQVIDE-FASDVNPH-QKLDDHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I  + +D   +    ++AHN KFD   ++       +     
Sbjct: 58  HLTGITDQQLAQAPDFSEIARKIFDLIED--CIFVAHNVKFDANLLS--EALFMEGYELR 113

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  +DT+ +A+  +P+  +   S   +  + +     H A+ D+     +   +M   + 
Sbjct: 114 TPRVDTVELAQVFYPTLEHYKLSHLSKV-LNLDLAQAHTAIEDARATGQLLFHLMDKIAS 172

Query: 181 I 181
           +
Sbjct: 173 L 173


>gi|237749183|ref|ZP_04579663.1| oligoribonuclease [Oxalobacter formigenes OXCC13]
 gi|229380545|gb|EEO30636.1| oligoribonuclease [Oxalobacter formigenes OXCC13]
          Length = 206

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +++M  I  D+E TGLD + DRIIE+  V
Sbjct: 28 RSEMNLIWVDLEMTGLDPETDRIIEVAVV 56


>gi|227548945|ref|ZP_03978994.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078970|gb|EEI16933.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 472

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 76/209 (36%), Gaps = 7/209 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITD 67
            + FD+ET   +     I +IG V ++D  +  R T+     P   +  P  + +HGI+ 
Sbjct: 122 FVGFDVET--ANPAWGSICQIGLVRVIDGREVERVTWLCTPPPGLDEFDPSNVAIHGISA 179

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++  P  +    E  +F  E     +AHNA+FD   +    + + +D  +        
Sbjct: 180 ETVEGSPPAAQRIDELVEFVGE--LPVVAHNAQFDATALREACRAVGRDIPNIMFACTLA 237

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                K     + L +L + +G+       H A  D+   + + + +             
Sbjct: 238 QSRAAKLKVQNHRLPTLAEHFGVQ--LEKHHDAGEDAAACAGILVGLARDAGHEGSVMSF 295

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                F         ++ + RD+    R 
Sbjct: 296 VHATGFTLGVINDERVTPVLRDRSGTARA 324


>gi|254425359|ref|ZP_05039077.1| exonuclease family [Synechococcus sp. PCC 7335]
 gi|196192848|gb|EDX87812.1| exonuclease family [Synechococcus sp. PCC 7335]
          Length = 273

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 57/171 (33%), Gaps = 6/171 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           V D+ETTG    N R+IE+  +   L D  +   ++   + P  +       ++ GIT E
Sbjct: 33  VVDVETTGALGHNARVIEVSVLHASLADGLEHQESY--LINPQVK-IPEYITRITGITPE 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P              E +  + AHN  FD  F+  E +R+      P        
Sbjct: 90  MVYSSPP-PEEIWPKCQPLLEGDRVFTAHNLDFDYSFLRTEYKRLGIRFYKPPLQKLCTV 148

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           I  R   +     +             + H A  D+     +   ++    
Sbjct: 149 ILSRMLLADLPSRSLPNLIKHFNFDIDTSHRAEADTKACWLLAKTLLTQIQ 199


>gi|302023531|ref|ZP_07248742.1| ATP-dependent DNA helicase [Streptococcus suis 05HAS68]
          Length = 822

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E TG  +   +II+IG V + +      ++   + P           L GITD
Sbjct: 12  RYAVVDLEATGTGTD-AKIIQIGIVLVENGEII-DSYATDINP-YELLDDHIKNLTGITD 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
           + L   P F  + S  +D   +  A ++AHN KFD  
Sbjct: 69  QQLSQAPDFGQVASTIYDMIGD--AIFVAHNVKFDAN 103


>gi|237750780|ref|ZP_04581260.1| DNA polymerase III subunit epsilon [Helicobacter bilis ATCC 43879]
 gi|229373225|gb|EEO23616.1| DNA polymerase III subunit epsilon [Helicobacter bilis ATCC 43879]
          Length = 268

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 5/114 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             DIETT    KN +IIEIGA+   +      TF   +         + + L GI    L
Sbjct: 82  FVDIETTSASVKNGQIIEIGAIIAQNGEIL-DTFDTLVYSP--FVPEDIIDLTGIDSYML 138

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +D P    +  +F  F  +  + ++AHN  FD  FI   L   +  PL   R+ 
Sbjct: 139 EDAPRLEQVLKQFRAFLGD--SVFVAHNVSFDYNFIAESLHEYDMPPLFNPRLC 190


>gi|227524779|ref|ZP_03954828.1| DNA-directed DNA polymerase III [Lactobacillus hilgardii ATCC 8290]
 gi|227088056|gb|EEI23368.1| DNA-directed DNA polymerase III [Lactobacillus hilgardii ATCC 8290]
          Length = 177

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 58/176 (32%), Gaps = 10/176 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET   ++K      +  V + +   T+  F   + P     S   + +HGI 
Sbjct: 1   MNFAAMDFET--ANAKRASACSLALVIVRNNQVTHE-FYSLINPET-DFSWRNINVHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + + P+F     +        N   +AHNA FD   +   L+R +        +   
Sbjct: 57  KQDVANAPTF-PELWDHIAPLFTANKLVVAHNASFDNSVLKRTLERYDLLLPHYLTLDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +  +       + LN++C    I + H         +         ++    Q  
Sbjct: 116 KTSKQFYPQMVNHKLNTVCDELHIELEHHHNALDDSVACANI-----LLTQQQQFG 166


>gi|126010887|ref|YP_001039857.1| putative exonuclease [Vibrio phage VP882]
 gi|123203897|gb|ABM73410.1| putative exonuclease [Vibrio phage VP882]
          Length = 206

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 14/174 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ETTGLDSK   IIEI  ++              + P       +A ++HGIT+E +
Sbjct: 17  ILDTETTGLDSK-AEIIEISIIDCAGNVL----LDTLVKP-TAPIPEDATRIHGITNEMV 70

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + P++  ++  F      +    + +NA +D+  I    +R +   +        L+ A
Sbjct: 71  ANAPTWPEVYDLFVPLVEGRE--LVIYNADYDLRMIRQADERNDLLNIRTQADCAMLAYA 128

Query: 131 RRKHPS------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                        +        +    +     H AL D  +   V   M    
Sbjct: 129 EFYGQWDDYRGQWKWQRLGNAAKQQGVVIEGKAHRALADCQMTLGVIASMAGQW 182


>gi|330973093|gb|EGH73159.1| ribonuclease T [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 213

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 13/193 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV +      +     T+   + P  G      AL+  G
Sbjct: 21  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 80

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +       + A  + HNA FD+GF+NA + R++  
Sbjct: 81  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    R  H A  D+   ++++  ++ 
Sbjct: 141 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 200

Query: 177 GGSQINFGFKTNE 189
              ++      ++
Sbjct: 201 RWKEMGGWQDFDD 213


>gi|66047122|ref|YP_236963.1| ribonuclease T [Pseudomonas syringae pv. syringae B728a]
 gi|302184721|ref|ZP_07261394.1| ribonuclease T [Pseudomonas syringae pv. syringae 642]
 gi|75500938|sp|Q4ZPJ7|RNT_PSEU2 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|63257829|gb|AAY38925.1| Ribonuclease T [Pseudomonas syringae pv. syringae B728a]
          Length = 225

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 13/193 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV +      +     T+   + P  G      AL+  G
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +       + A  + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    R  H A  D+   ++++  ++ 
Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212

Query: 177 GGSQINFGFKTNE 189
              ++      ++
Sbjct: 213 RWKEMGGWQDFDD 225


>gi|182435215|ref|YP_001822934.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|326775853|ref|ZP_08235118.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
          griseus XylebKG-1]
 gi|178463731|dbj|BAG18251.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
          subsp. griseus NBRC 13350]
 gi|326656186|gb|EGE41032.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
          griseus XylebKG-1]
          Length = 236

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 18/40 (45%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
          FD+ETTG D +NDRI+    V L             L P 
Sbjct: 11 FDLETTGTDVENDRIVTAALVRLDADGTVAEQRTWLLDPG 50


>gi|264676215|ref|YP_003276121.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2]
 gi|262206727|gb|ACY30825.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2]
          Length = 214

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 5/115 (4%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+  ++  R  E+  V L      +R FQ  +   G   SP   +L GIT+  
Sbjct: 8   VIDFETTGMTPAQGARATEVAIVLLEQGRVVDR-FQSLMQ-TGAWVSPFITELTGITNAM 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           L+  P  + +  +   F         AHNA FD  F  AEL    +         
Sbjct: 66  LRTAPPAAEVMRDAARFVGAAPMV--AHNASFDSKFWQAELALAGEAAPQLFACT 118


>gi|168492961|ref|ZP_02717104.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC3059-06]
 gi|183577104|gb|EDT97632.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC3059-06]
          Length = 816

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D    +N  ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLV--ENGIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|299531122|ref|ZP_07044534.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
 gi|298720825|gb|EFI61770.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
          Length = 213

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 5/115 (4%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+  ++  R  E+  V L      +R FQ  +   G   SP   +L GIT+  
Sbjct: 7   VIDFETTGMTPAQGARATEVAIVLLEQGRVVDR-FQSLMQ-TGAWVSPFITELTGITNAM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           L+  P  + +  +   F         AHNA FD  F  AEL    +         
Sbjct: 65  LRTAPPAAEVMRDAARFVGAAPMV--AHNASFDSKFWQAELALAGEAAPQLFACT 117


>gi|237798772|ref|ZP_04587233.1| ribonuclease T [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021625|gb|EGI01682.1| ribonuclease T [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 225

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 13/193 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP------NGRKNSPEA 59
           +V D+ET G +S  D ++EI AV +      +     T+   + P               
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116
           +KL       + ++ + + IF                 + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAINDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    R  H A  D+   ++++  ++ 
Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212

Query: 177 GGSQINFGFKTNE 189
              ++      ++
Sbjct: 213 RWKEMGGWQDFDD 225


>gi|330950000|gb|EGH50260.1| ribonuclease T [Pseudomonas syringae Cit 7]
          Length = 225

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV +      +     T+   + P  G      AL+  G
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +       + A  + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    R  H A  D+   ++++  ++ 
Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212

Query: 177 GGSQIN 182
              ++ 
Sbjct: 213 RWKEMG 218


>gi|317505657|ref|ZP_07963560.1| exonuclease [Prevotella salivae DSM 15606]
 gi|315663242|gb|EFV03006.1| exonuclease [Prevotella salivae DSM 15606]
          Length = 175

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 7/158 (4%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           +I    M+     D ET   + K   +  +G V + +    +R F   + P     +   
Sbjct: 8   LIFAVIMKDFAAIDFET--ANGKRTSVCSVGVVIVRNGMIVDR-FYSLIHPEPDYYTYWN 64

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HG+T     + P F  ++ +            +AHN  FD   + A  +       D
Sbjct: 65  TKMHGLTQADTNNAPIFPEVWRKIMPLI--DQLPLVAHNKAFDESCLKAVFKCYQMTYPD 122

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK 157
                  L       P  R++L  +  R G  ++    
Sbjct: 123 YIFHCTLLKSRSV-WPQGRHNLGIIAARCGYNLTQHHH 159


>gi|289676753|ref|ZP_06497643.1| ribonuclease T [Pseudomonas syringae pv. syringae FF5]
          Length = 225

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV +      +     T+   + P  G      AL+  G
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +       + A  + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    R  H A  D+   ++++  ++ 
Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212

Query: 177 GGSQIN 182
              ++ 
Sbjct: 213 RWKEMG 218


>gi|255021102|ref|ZP_05293155.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
          51756]
 gi|254969516|gb|EET27025.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
          51756]
          Length = 475

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+E TG   + DRIIE+G + +    +    +   + P  R  SP    L GI    L
Sbjct: 11 FIDLENTGGHLERDRIIEVGIILVAPAGEP-EVWSTLINPEIR-LSPAISTLTGIDPADL 68

Query: 71 KDKPSFSSIFSEFWDFF 87
             P+F+ +     +  
Sbjct: 69 AHAPTFAQVAEPLREKL 85


>gi|294793582|ref|ZP_06758719.1| putative exonuclease family protein [Veillonella sp. 3_1_44]
 gi|294455152|gb|EFG23524.1| putative exonuclease family protein [Veillonella sp. 3_1_44]
          Length = 327

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 25/205 (12%)

Query: 7   MRKIVFDIE--------------T----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           M  IVFD+E              T    TG       II+IGAV+L +       F +F+
Sbjct: 1   MNYIVFDLEWNQPYSNDISFMKRTKMPLTG------EIIQIGAVKLNEKMDIIDHFTMFI 54

Query: 49  CPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            P    +      +L GIT   L     F +    F  +  ++       +    +   N
Sbjct: 55  KPQYLTRMHKHVRELTGITTHELNHGVPFKTAMQYFQKWCGDEYMLLSWGSDDILILREN 114

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             L ++     D       +   +R   S +  +    +   I+  H S H AL D+   
Sbjct: 115 LMLHKMKALSYDQWVDAQMIYSYQRYGTSQQYSVAHAMEDLNISTEHLSAHNALHDAVFT 174

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRF 192
           + +   + +    +++     E   
Sbjct: 175 AHICQTLDIAQGILHYDLIRKESSN 199


>gi|255743723|ref|ZP_05417681.1| polymerase epsilon subunit like protein [Vibrio cholera CIRS 101]
 gi|255738584|gb|EET93971.1| polymerase epsilon subunit like protein [Vibrio cholera CIRS 101]
 gi|259156231|gb|ACV96178.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ban5]
 gi|259156377|gb|ACV96322.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ind5]
          Length = 301

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 80/238 (33%), Gaps = 17/238 (7%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSK-TNRTFQVFLCPNGRKNSP 57
           +  M  ++ D ETTGL + ++ IIE+G V++L                ++  P G+    
Sbjct: 49  EQPM--VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDP-GKPIPE 105

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              +L GITDE ++ +    ++ + +       +   +AHNA+FD  F            
Sbjct: 106 LITELTGITDEIVQGQRIDDAMVASW----LSDDPLVVAHNAQFDRPFFEKRFAAFGHLS 161

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              S           +       L  L   Y    +           HLL +    ++  
Sbjct: 162 WACSASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSE 221

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231
             +     +     F  ++                +K  +  I+++EL +    +  L
Sbjct: 222 ADRRTVLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279


>gi|238022741|ref|ZP_04603167.1| hypothetical protein GCWU000324_02650 [Kingella oralis ATCC 51147]
 gi|237865944|gb|EEP67080.1| hypothetical protein GCWU000324_02650 [Kingella oralis ATCC 51147]
          Length = 464

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 67/175 (38%), Gaps = 8/175 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+ETTG     DRI E+  +       T    Q  + PN    S     L GI+DE 
Sbjct: 25  VILDLETTGGHFYADRITELAFLHFWQGKITAV--QQLVQPN-MPISGFVRDLTGISDEM 81

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+ +P+F+    +         +  IAHN++FD  F+  E +R        +  + ++ +
Sbjct: 82  LQGQPTFAQFAPQVLPLLRG--SLLIAHNSRFDYTFLRHECRRNGFA--FATAGLCSVQL 137

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           +R+ +P                      H A+ D   +++     +        G
Sbjct: 138 SRKLYPEFFKHNLDSIIERHGLAVASR-HRAMSDVLAVAEYLQLALREKGAPLLG 191


>gi|229187939|ref|ZP_04315044.1| exonuclease [Bacillus cereus BGSC 6E1]
 gi|228595536|gb|EEK53251.1| exonuclease [Bacillus cereus BGSC 6E1]
          Length = 181

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 11/144 (7%)

Query: 5   NKM-----RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           NKM     + ++ D ETTGL +  D+IIEI  ++L             + P       EA
Sbjct: 16  NKMFINRDQFVILDTETTGL-TLRDQIIEICVIDLTGKIL----LNSLVKP-TINIPAEA 69

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGIT+E + D PS+  I+ E  +    +            +         +      
Sbjct: 70  ASIHGITNEKVHDAPSWIEIYKELCEVTAGKTLLIYNAEFDLGMIESTCFANNVEFKNFK 129

Query: 120 PSRIIDTLSIARRKHPSSRNDLNS 143
            + I+   +              +
Sbjct: 130 STFIMKMYADYVDSKRWISLSDAT 153


>gi|159904464|ref|YP_001548126.1| hypothetical protein MmarC6_0068 [Methanococcus maripaludis C6]
 gi|159885957|gb|ABX00894.1| hypothetical protein MmarC6_0068 [Methanococcus maripaludis C6]
          Length = 153

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELL 35
            IV D ETTGL+   DRII IG   + 
Sbjct: 3  NIIVLDTETTGLNPLTDRIITIGLWHVN 30


>gi|85711670|ref|ZP_01042727.1| DNA polymerase III subunit epsilon [Idiomarina baltica OS145]
 gi|85694530|gb|EAQ32471.1| DNA polymerase III subunit epsilon [Idiomarina baltica OS145]
          Length = 244

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 4/143 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           +I+   M  +  D ETTGLD + + I+ I  V +       ++  Q  + P  +  + E+
Sbjct: 48  LIKDAPM--VAVDFETTGLDCQRNSIVSIAVVPMSAQRIFMSQARQWVVKP-RQDLTDES 104

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +HGIT   ++  P   +I  E  D    +      +  +        + +        
Sbjct: 105 VVIHGITHSDIQSAPDIEAILPELLDLVAGKIWVVHYNGIERPFLQKAMDARFNEHIHFP 164

Query: 120 PSRIIDTLSIARRKHPSSRNDLN 142
               +   +   R+  S  + L 
Sbjct: 165 VIDTMAIEARFHRQRRSFWSRLM 187


>gi|313681496|ref|YP_004059234.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154356|gb|ADR33034.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 267

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           + D+E+ G    + +IIEIGAV+L +      T++  +
Sbjct: 67  IVDVESNGSKPAHHQIIEIGAVKLQNGKII-DTYESLV 103


>gi|227513634|ref|ZP_03943683.1| DNA-directed DNA polymerase III [Lactobacillus buchneri ATCC 11577]
 gi|227083150|gb|EEI18462.1| DNA-directed DNA polymerase III [Lactobacillus buchneri ATCC 11577]
          Length = 177

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 58/176 (32%), Gaps = 10/176 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET   ++K      +  V + +   T+  F   + P     S   + +HGI 
Sbjct: 1   MNFAAMDFET--ANAKRASACSLALVIVRNNQVTHE-FYSLINPET-DFSWRNINVHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + + P+F     +        N   +AHNA FD   +   L+R +        +   
Sbjct: 57  KQDVANAPTF-PELWDHIAPLFTANKLVVAHNASFDNSVLKRTLERYDLLLPHFLTLDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +  +       + LN++C    I + H         +         ++    Q  
Sbjct: 116 KTSKQFYPQMVNHKLNTVCDELHIELEHHHNALDDSVACANI-----LLTQQQQFG 166


>gi|222622820|gb|EEE56952.1| hypothetical protein OsJ_06659 [Oryza sativa Japonica Group]
          Length = 348

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
           +M  +  D+E TGLD   DRI+EI  + + D   T +
Sbjct: 166 QMPLVWIDLEMTGLDVAKDRILEIACI-ITDGKLTKQ 201


>gi|307706367|ref|ZP_07643179.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK321]
 gi|307618285|gb|EFN97440.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK321]
          Length = 816

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLVQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMAQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|146318210|ref|YP_001197922.1| Rad3-related DNA helicase [Streptococcus suis 05ZYH33]
 gi|146320404|ref|YP_001200115.1| Rad3-related DNA helicase [Streptococcus suis 98HAH33]
 gi|145689016|gb|ABP89522.1| Rad3-related DNA helicase [Streptococcus suis 05ZYH33]
 gi|145691210|gb|ABP91715.1| Rad3-related DNA helicase [Streptococcus suis 98HAH33]
 gi|292558009|gb|ADE31010.1| DnaQ exonuclease [Streptococcus suis GZ1]
          Length = 837

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E TG  +   +II+IG V + +      ++   + P           L GITD
Sbjct: 27  RYAVVDLEATGTGTD-AKIIQIGIVLVENGEII-DSYATDINP-YELLDDHIKNLTGITD 83

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
           + L   P F  + S  +D   +  A ++AHN KFD  
Sbjct: 84  QQLSQAPDFGQVASTIYDMIGD--AIFVAHNVKFDAN 118


>gi|15640327|ref|NP_229954.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|153822831|ref|ZP_01975498.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
 gi|153827159|ref|ZP_01979826.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-2]
 gi|153831076|ref|ZP_01983743.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|227080513|ref|YP_002809064.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           M66-2]
 gi|229524741|ref|ZP_04414146.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|9654711|gb|AAF93473.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126519649|gb|EAZ76872.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
 gi|148873443|gb|EDL71578.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|149738956|gb|EDM53274.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-2]
 gi|227008401|gb|ACP04613.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           M66-2]
 gi|227012158|gb|ACP08368.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229338322|gb|EEO03339.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
          Length = 223

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 74/171 (43%), Gaps = 7/171 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD K   ++ I A ++  +   T++ F+V LC   +     ++++H I  
Sbjct: 44  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLC-APQSLDSGSVRIHRIRH 102

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L D  S      +  +F    N   + ++ ++D   ++   ++    PL    I  + 
Sbjct: 103 QDLHDGLSEKEALLQLIEFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQ 160

Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                  +  P++  DL+       + +  + KH AL D+   + V++++ 
Sbjct: 161 IYHDKLEKHLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIAAALVFVRLT 211


>gi|121591065|ref|ZP_01678378.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           2740-80]
 gi|121729644|ref|ZP_01682121.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
 gi|147675462|ref|YP_001218570.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395]
 gi|153803140|ref|ZP_01957726.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-3]
 gi|153819596|ref|ZP_01972263.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
           8457]
 gi|229506903|ref|ZP_04396411.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229509276|ref|ZP_04398759.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229512692|ref|ZP_04402160.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|229516220|ref|ZP_04405668.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229520981|ref|ZP_04410402.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229527205|ref|ZP_04416598.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229606416|ref|YP_002877064.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236]
 gi|254851434|ref|ZP_05240784.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
 gi|255744098|ref|ZP_05418052.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262161990|ref|ZP_06031007.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262167979|ref|ZP_06035678.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262192561|ref|ZP_06050711.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|298500931|ref|ZP_07010733.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
 gi|121547098|gb|EAX57233.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           2740-80]
 gi|121628578|gb|EAX61057.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
 gi|124121331|gb|EAY40074.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-3]
 gi|126509852|gb|EAZ72446.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
           8457]
 gi|146317345|gb|ABQ21884.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229335213|gb|EEO00697.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229341866|gb|EEO06867.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229346646|gb|EEO11616.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229350202|gb|EEO15154.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|229353591|gb|EEO18528.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229356008|gb|EEO20927.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229369071|gb|ACQ59494.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236]
 gi|254847139|gb|EET25553.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
 gi|255738363|gb|EET93754.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262023512|gb|EEY42214.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262028368|gb|EEY47024.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262031606|gb|EEY50194.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|297540435|gb|EFH76494.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
 gi|327483170|gb|AEA77577.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4]
          Length = 209

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 74/171 (43%), Gaps = 7/171 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD K   ++ I A ++  +   T++ F+V LC   +     ++++H I  
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLC-APQSLDSGSVRIHRIRH 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L D  S      +  +F    N   + ++ ++D   ++   ++    PL    I  + 
Sbjct: 89  QDLHDGLSEKEALLQLIEFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQ 146

Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                  +  P++  DL+       + +  + KH AL D+   + V++++ 
Sbjct: 147 IYHDKLEKHLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIAAALVFVRLT 197


>gi|15900695|ref|NP_345299.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae TIGR4]
 gi|111658147|ref|ZP_01408844.1| hypothetical protein SpneT_02000672 [Streptococcus pneumoniae
           TIGR4]
 gi|149021672|ref|ZP_01835703.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72]
 gi|14972279|gb|AAK74939.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus pneumoniae TIGR4]
 gi|147930133|gb|EDK81119.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72]
          Length = 816

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLRKKMTQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|153811608|ref|ZP_01964276.1| hypothetical protein RUMOBE_02000 [Ruminococcus obeum ATCC 29174]
 gi|149832349|gb|EDM87434.1| hypothetical protein RUMOBE_02000 [Ruminococcus obeum ATCC 29174]
          Length = 319

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 10/178 (5%)

Query: 7   MRKIVFDIE---TTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  IVFD+E   + G    ++      IIEIGAV++ +  +    FQ  + P       +
Sbjct: 1   MNYIVFDLEWNQSPGGKKYSNSRLPFEIIEIGAVKMNEQREVVDVFQRLVKPQVYNWIHD 60

Query: 59  ALKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD 116
           ++     +  + L D   F     EF  +  E+       N    ++         ++  
Sbjct: 61  SIHEVIHVDYKDLADGEPFQQAVREFLKWCGEEYVFCTWGNQDVMELQRNMKYYGMLSLL 120

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           P   +              +                  +  H AL D+    D++  +
Sbjct: 121 PGPVTYYDVQKIYGICHEEAGGRRSLEFAIDQMGIPKAQDFHRALTDARYTGDIFKTL 178


>gi|86145828|ref|ZP_01064156.1| DNA polymerase III, epsilon chain [Vibrio sp. MED222]
 gi|85836283|gb|EAQ54413.1| DNA polymerase III, epsilon chain [Vibrio sp. MED222]
          Length = 238

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
           IV D+ETTGLDS+ D I+ +G V+++     
Sbjct: 51 YIVLDLETTGLDSEQDLILSMGWVDVVKGRID 82


>gi|313668201|ref|YP_004048485.1| DNA polymerase III subunit [Neisseria lactamica ST-640]
 gi|313005663|emb|CBN87106.1| putative DNA polymerase III subunit [Neisseria lactamica 020-06]
          Length = 470

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 64/173 (36%), Gaps = 8/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   D + E+  V+          ++  + P  +       +L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDMVTEVALVKFEQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +          +AHN++FD  F+    +         S  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++R  +P              + I    +H A+ D   L D     +    
Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192


>gi|55820864|ref|YP_139306.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55736849|gb|AAV60491.1| ATP-dependent DNA helicase, truncated [Streptococcus thermophilus
           LMG 18311]
          Length = 557

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 76/181 (41%), Gaps = 8/181 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K+  +  + D+E T   S    II++G V + +    +  F   + P+ +K     +
Sbjct: 12  MSEKSTNKYAIVDLEATSASS-TACIIQVGIVIMQNGRVIDE-FASDVNPH-QKLDNHIV 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I    ++   +    ++AHN KFD   +        +     
Sbjct: 69  HLTGITDQQLSQAPDFSEIARTIFELIED--CIFVAHNVKFDANLLA--EALFMEGFELR 124

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  +DT+ +A+  +P+      S   R  + +     H A+ D+     + + +M   + 
Sbjct: 125 TPRVDTVELAQVFYPTLEQYNLSYLSRV-LNLDLAQAHTAIEDARATGKLLLHLMDKIAS 183

Query: 181 I 181
           +
Sbjct: 184 L 184


>gi|319757677|gb|ADV69619.1| Rad3-related DNA helicase [Streptococcus suis JS14]
          Length = 837

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E TG  +   +II+IG V + +      ++   + P           L GITD
Sbjct: 27  RYAVVDLEATGTGTD-AKIIQIGIVLVENGEII-DSYATDINP-YELLDDHIKNLTGITD 83

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
           + L   P F  + S  +D   +  A ++AHN KFD  
Sbjct: 84  QQLSQAPDFGQVASTIYDMIGD--AIFVAHNVKFDAN 118


>gi|332520671|ref|ZP_08397133.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332044024|gb|EGI80219.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 444

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 8/187 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   + D+ET+G   + +RI EI   +  +    +  F   + PN          L GI 
Sbjct: 1   MFYTIIDVETSG---RTNRITEISIFKYHENKIIDE-FTSLVNPNC-YIPEHITALTGID 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + + P FS I ++  +    ++  ++AHN  FD   I  E +R+  D          
Sbjct: 56  NNTVANAPEFSEIANKVLE--ITKDCIFVAHNVNFDYNVIRKEFKRLEIDFTRKKLCTVR 113

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS            L  LCK   I I+ R +     ++ ++    ++      +I   F 
Sbjct: 114 LSRKLLPG-HRSYSLGKLCKDLNICINGRHRARGDAEATVILFKKLQAQENAKEIFLKFL 172

Query: 187 TNEDRFF 193
               +  
Sbjct: 173 NKNSKQA 179


>gi|312863243|ref|ZP_07723481.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           vestibularis F0396]
 gi|311100779|gb|EFQ58984.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           vestibularis F0396]
          Length = 839

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 12/224 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  KN  +  + D+E T   S    II++G V + +    +  F   + P+ ++     +
Sbjct: 12  MSEKNTNKYAIVDLEATSASS-TACIIQVGIVIMQNGLVIDE-FASDVNPH-QELDDHIV 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I    ++   +    ++AHN KFD   +        +     
Sbjct: 69  HLTGITDQQLSQAPDFSEIARTIFELIED--CIFVAHNVKFDANLLA--EALFMEGFELR 124

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG-- 178
           +  +DT+ +A+  +P+      S   +  + +     H A+ D+     +   +M     
Sbjct: 125 TPRVDTVELAQVFYPTLEQYKLSYLSQV-LNLDLAQAHTAIEDARATGQLLFHLMDKIAS 183

Query: 179 --SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
              Q      T  D    E +  + +    K +      +  EE
Sbjct: 184 LPRQTIDMLLTFSDNLLFESELVIRDAIKGKTNSLSKKYVMLEE 227


>gi|87124219|ref|ZP_01080068.1| Exonuclease [Synechococcus sp. RS9917]
 gi|86167791|gb|EAQ69049.1| Exonuclease [Synechococcus sp. RS9917]
          Length = 261

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 58/217 (26%), Gaps = 10/217 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHGITDE 68
           + D ET+GLD + D+ +E+GA+              Q FL P          +       
Sbjct: 35  ILDTETSGLDPEQDQCLEVGAILFD--VPEREVLVQQSFLLPVEHN----PAQAINHIAA 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P        +     +     +AH+A FD  +         +     +       
Sbjct: 89  SATRCPQPWREGLRYLQALMDTADLLVAHHAAFDRQWFGRGHLPAARAAWLCTMDDIRWP 148

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL--SDVYIKMMVGGSQINFGFK 186
              +  P       +L     +   HR+    +  + +    D    ++  G +     +
Sbjct: 149 AELQLRPRPSVRDLALAHGIPVWAVHRALADCVYIAEVFKRRDDLEVLIRLGLEPRLLMR 208

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
                  +   +                R++  E   
Sbjct: 209 AQVSFEQRHLAREAGFRWNDPVAGAWTRRLSAREAQA 245


>gi|116618623|ref|YP_818994.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116097470|gb|ABJ62621.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 177

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 5/165 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + +    + I    + D    ++ F   + P     S     +HG+ 
Sbjct: 1   MNFVAMDFET--ANREKHSAVSIALAIVRDNQVVDK-FYSLIKPET-TFSSYNTAIHGLH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P F     +    F  +N   +AHNA FD   +   LQ  + D      +   
Sbjct: 57  RQDVADAPKF-PEVWQTISPFFTENKLVVAHNASFDNSILKGTLQYYDIDEPHYLLLDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +  +       + LN++    GIT+ H         +     +Y
Sbjct: 116 QTSRKLFPNFENHKLNTVAGNLGITLDHHHNALDDAVAAANILIY 160


>gi|322516980|ref|ZP_08069870.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus vestibularis ATCC 49124]
 gi|322124463|gb|EFX95958.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus vestibularis ATCC 49124]
          Length = 828

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 75/181 (41%), Gaps = 8/181 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  KN  +  + D+E T   S    II++G V + +    +  F   + P+ ++     +
Sbjct: 1   MSEKNTNKYAIVDLEATSASS-TACIIQVGIVIMQNGLVIDE-FASDVNPH-QELDDHIV 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I    ++   +    ++AHN KFD   +        +     
Sbjct: 58  HLTGITDQQLSQAPDFSEIARTIFELIED--CIFVAHNVKFDANLLA--EALFMEGFELR 113

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  +DT+ +A+  +P+      S   +  + +     H A+ D+     +   +M   + 
Sbjct: 114 TPRVDTVELAQVFYPTLEQYKLSYLSQV-LNLDLAQAHTAIEDARATGQLLFHLMDKIAS 172

Query: 181 I 181
           +
Sbjct: 173 L 173


>gi|91202954|emb|CAJ72593.1| strongly similar DNA polymerase epsilon subunit (3'-5' exonuclease)
           [Candidatus Kuenenia stuttgartiensis]
          Length = 204

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 71/207 (34%), Gaps = 11/207 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ET   ++K   +  +G   + + +   RT    + P      P +  +HGI+
Sbjct: 1   MKCVAIDFET--ANAKRSSVCSLGLAIIEEQTIVKRT-SWLIRPPELYFDPFSTYIHGIS 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + ++DKP F  ++ E + F        +AHNA FD+  +   L          +     
Sbjct: 58  AKDVEDKPEFYQLWDEIFPFLEGSY--LVAHNASFDMSVLCCILDVYKIPYPPLNYFCTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
               R           +L K           H A  D+   + +   ++   +++     
Sbjct: 116 AIAKRV---WPGLLGYALNKISRYLEIEFKHHDAEEDAVACAKI---LLHAYNELGVNNL 169

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLF 213
               +  K  +K +   +      P  
Sbjct: 170 EELAKKIKLPEKYLLPDNFTPTLNPQV 196


>gi|304312854|ref|YP_003812452.1| Ribonuclease T [gamma proteobacterium HdN1]
 gi|301798587|emb|CBL46817.1| Ribonuclease T [gamma proteobacterium HdN1]
          Length = 223

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 63/186 (33%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTN-RTFQVFLCP----NGRKNSPEALK 61
           +V D+ET G +S+ D ++EI A+ L    +      RT    + P    N  K S E   
Sbjct: 19  VVIDVETGGFNSQTDALLEIAAISLHFDENGWLKKYRTSHFHVSPFAGANIEKASLEFTG 78

Query: 62  LHGITDEFLKDKPS-----FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           +                        +       + A  + HNA FD  F+ A  QR    
Sbjct: 79  IDPWHPFRNAVDEKVALTEIFGEVRKALSNLECKRAILVGHNAFFDHQFLFAATQRAAIK 138

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C   GI+ + +  H AL D+   +D++  ++ 
Sbjct: 139 RNPFHPFSCFDTATLGGVALGQTVLARACIAAGISFNQKEAHSALYDADKTADLFCHIVN 198

Query: 177 GGSQIN 182
               + 
Sbjct: 199 RWRALG 204


>gi|311739312|ref|ZP_07713148.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
          ATCC 33035]
 gi|311305610|gb|EFQ81677.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
          ATCC 33035]
          Length = 65

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVE 33
            V D ETTG + + DRIIE+ AV 
Sbjct: 31 FAVIDTETTGFNKRYDRIIELTAVR 55


>gi|21220034|ref|NP_625813.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor
          A3(2)]
 gi|256788866|ref|ZP_05527297.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289772754|ref|ZP_06532132.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|6822230|emb|CAB70936.1| putative DNA polymerase III [Streptomyces coelicolor A3(2)]
 gi|289702953|gb|EFD70382.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
          Length = 241

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG+D++ DRI+    V         R  +  + P G      A  +HG+T+E++
Sbjct: 11 AFDTETTGVDTETDRIVSAALVVQDAPGLRPRVTRWLVNP-GVPVPESATAVHGLTEEYV 69

Query: 71 KDKPSFSSIFSEFWD 85
          +    + +       
Sbjct: 70 QRHGRWPAPVMYEMA 84


>gi|120597914|ref|YP_962488.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp.
           W3-18-1]
 gi|120558007|gb|ABM23934.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp.
           W3-18-1]
          Length = 301

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 81/238 (34%), Gaps = 17/238 (7%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSK-TNRTFQVFLCPNGRKNSP 57
           +  M  ++ D ETTGL + ++ IIE+G V++L                ++  P G+    
Sbjct: 49  ERPM--VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDP-GKPIPE 105

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              +L GITD+ ++ +    S+ + +       +   +AHNA+FD  F       +    
Sbjct: 106 LITELTGITDDMVQGQHIDDSLVASW----LSDDPLVVAHNAQFDRPFFEKRFAALGHLS 161

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              S           +       L  L   Y    +           HLL +    ++  
Sbjct: 162 WACSASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCFAMAWLFHLLPESVANLLSE 221

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231
             +     +     F  ++                +K  +  I+++EL +    +  L
Sbjct: 222 ADRRTVLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279


>gi|225870177|ref|YP_002746124.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047]
 gi|225699581|emb|CAW93205.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. equi
           4047]
          Length = 823

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 8/181 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI +   +  V D+E T        II++G V +++  +   ++Q  + P+    S    
Sbjct: 1   MINEFSQKYAVIDLEATSPGP-TASIIQVGIV-IVEGKEIVDSYQTDINPH-EPLSDHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS +    ++   +    ++AHN  FD   +   L     D L  
Sbjct: 58  ALTGITDQQLAQAPDFSQVARTIFELIED--CVFVAHNVTFDANLLAEALFLEGYDLL-- 113

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  +DT+ +A+  +PS      S      + ++    H A+ D+   ++++IK++     
Sbjct: 114 TPRVDTVELAQIFYPSLEKYSLSHLSEV-LDLNLSDAHTAIADAQATANLFIKLLHKIES 172

Query: 181 I 181
           +
Sbjct: 173 L 173


>gi|163789521|ref|ZP_02183959.1| exonuclease [Carnobacterium sp. AT7]
 gi|159875053|gb|EDP69119.1| exonuclease [Carnobacterium sp. AT7]
          Length = 177

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 5/167 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET    ++      +    +         +   + P         +++HGIT
Sbjct: 1   MNFVALDFET--ASNQRHSACSVALTVVRKSKIV-DHYYSLIKPETEFF-WRNVQVHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +KD PSF     E    F  +N   +AHN  FD G +   L   +        +   
Sbjct: 57  ENDVKDAPSF-PEVWEQIKPFFTENKLIVAHNLPFDRGVLQGCLDYYDLPQPHFQTLCTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            S  +       + LN++C    I++ +        ++     +Y++
Sbjct: 116 QSSRKLITEIPNHKLNTVCDHLNISLKNHHNALEDSNACAAILLYLE 162


>gi|15894025|ref|NP_347374.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum ATCC
           824]
 gi|15023620|gb|AAK78714.1|AE007589_2 DNA polymerase III epsilon subunit (3'-5' exonuclease) containing
           BRCT domain [Clostridium acetobutylicum ATCC 824]
          Length = 306

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 5/150 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+    D ET   + K +    IG V + D     ++    + P   +  P  + +HGI 
Sbjct: 1   MKFTAIDFET--ANEKRNSPCSIGIVVVKDGHVVEKS-HHLIRPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++ +P F  ++ +   +F++     IAHNA FD+  +    +  N +  + + I   
Sbjct: 58  PAMVEKEPEFDKVWEKIKHYFDD--TLVIAHNASFDISVLRKSAELYNIELPEFNYICTM 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156
                         LN++    G    H  
Sbjct: 116 KLARNFYKGIENAKLNTVNNFLGYEFRHHD 145


>gi|330877336|gb|EGH11485.1| ribonuclease T [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330966675|gb|EGH66935.1| ribonuclease T [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 225

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP------NGRKNSPEA 59
           +V D+ET G +S  D ++EI AV +      +     T+   + P               
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFAGANIEAAALEFTG 92

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116
           +KL       + ++ + + IF                 + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    R  H A  D+   ++++  ++ 
Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212

Query: 177 GGSQIN 182
              ++ 
Sbjct: 213 RWKEMG 218


>gi|323492075|ref|ZP_08097237.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
 gi|323313636|gb|EGA66738.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
          Length = 210

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 72/171 (42%), Gaps = 7/171 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD     ++ I A +++ +   T++ F+V L    +     ++K+H I  
Sbjct: 30  YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLR-APQSLDSGSVKIHKIRH 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L D         +  +F    N   + ++ ++D   ++   Q+    PL    I  + 
Sbjct: 89  QDLVDGIDEKQALIQLLEFI--GNRPLVGYHIRYDKKILDLACQKQLGFPLPNPLIEVSQ 146

Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                  +  P++  DL+       + +  + KH AL D+   + V++++ 
Sbjct: 147 IYHDKLEKHLPNAYFDLSLDAICRHLDLPMQDKHDALQDAISAALVFVRLT 197


>gi|300778928|ref|ZP_07088786.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
 gi|300504438|gb|EFK35578.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
          Length = 1555

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 63/201 (31%), Gaps = 18/201 (8%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL        +D     R+++I      D           + P G      
Sbjct: 2   YLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDDDGNLIENQDYIIKPEGYDIPFN 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-----FINAELQRI 113
           A ++HGIT +   ++        E +    E+      HN +FD       F    L+  
Sbjct: 62  AARIHGITTKIANEEGRDLQEILEEFSKVLEKVRVVSGHNVEFDYNIVGAEFYRKNLKDN 121

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL---DSHLLSDV 170
            ++      +I      +              +     +       A     D +  +  
Sbjct: 122 LQEKPKADTMILGADFCQLGGGRGGRFKPPKLEELYEKLYGSKFDEAHNAAADVNATARA 181

Query: 171 YIKMMVGGSQINFGFKTNEDR 191
           + +M+  G       K +ED+
Sbjct: 182 FFEMVRIGVVPAETLKISEDQ 202


>gi|213970865|ref|ZP_03398988.1| ribonuclease T [Pseudomonas syringae pv. tomato T1]
 gi|213924388|gb|EEB57960.1| ribonuclease T [Pseudomonas syringae pv. tomato T1]
          Length = 203

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP------NGRKNSPEA 59
           +V D+ET G +S  D ++EI AV +      +     T+   + P               
Sbjct: 11  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFTG 70

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116
           +KL       + ++ + + IF                 + HNA FD+GF+NA + R++  
Sbjct: 71  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 130

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    R  H A  D+   ++++  ++ 
Sbjct: 131 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 190

Query: 177 GGSQIN 182
              ++ 
Sbjct: 191 RWKEMG 196


>gi|160893764|ref|ZP_02074548.1| hypothetical protein CLOL250_01318 [Clostridium sp. L2-50]
 gi|156864749|gb|EDO58180.1| hypothetical protein CLOL250_01318 [Clostridium sp. L2-50]
          Length = 216

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 7  MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
          M  I  D E   +D+          + IIEIGAV+L D  K   +F+ ++ P     +  
Sbjct: 1  MEYIFVDFEMNQIDNSHPDELKICKNEIIEIGAVKLDDTYKEIDSFKTYVKPGITPVTSR 60

Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDF 86
             L GIT+E + D P F+     F  +
Sbjct: 61 ITNLTGITNEMVDDAPDFAIAMDRFIAW 88


>gi|15902755|ref|NP_358305.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae R6]
 gi|116516668|ref|YP_816199.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae D39]
 gi|15458302|gb|AAK99515.1| ATP-dependent DNA helicase [Streptococcus pneumoniae R6]
 gi|116077244|gb|ABJ54964.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae D39]
          Length = 816

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMAQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|28871300|ref|NP_793919.1| ribonuclease T [Pseudomonas syringae pv. tomato str. DC3000]
 gi|301384500|ref|ZP_07232918.1| ribonuclease T [Pseudomonas syringae pv. tomato Max13]
 gi|302130507|ref|ZP_07256497.1| ribonuclease T [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|37999382|sp|Q87XM0|RNT_PSESM RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|28854550|gb|AAO57614.1| ribonuclease T [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331015669|gb|EGH95725.1| ribonuclease T [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 225

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP------NGRKNSPEA 59
           +V D+ET G +S  D ++EI AV +      +     T+   + P               
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFTG 92

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116
           +KL       + ++ + + IF                 + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    R  H A  D+   ++++  ++ 
Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212

Query: 177 GGSQIN 182
              ++ 
Sbjct: 213 RWKEMG 218


>gi|114321417|ref|YP_743100.1| ribonuclease T [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227811|gb|ABI57610.1| RNAse T [Alkalilimnicola ehrlichii MLHE-1]
          Length = 216

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 13/184 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET GL++  D +++I AV L            T    + P  G    P+AL+L+G
Sbjct: 25  VVVDVETGGLNAATDALLQIAAVVLRMDENGRLYPAATHTCHVKPFEGANIDPKALELNG 84

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +         A  I HN+ FD+GF+NA +QR    
Sbjct: 85  IDPDHPLRMALPEDEALKKVFRPIRQEVRQTGCNRAVLIGHNSFFDLGFLNAAVQRCGIK 144

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L       G     ++ H A+ D+   +D++  ++ 
Sbjct: 145 RNPFHPFTSFDTATLAGLAYGQTVLAKALVASGEEWDGKAAHSAIYDAEKTADLFCGIVN 204

Query: 177 GGSQ 180
              +
Sbjct: 205 RWDE 208


>gi|313768210|ref|YP_004061890.1| hypothetical protein MpV1_007c [Micromonas sp. RCC1109 virus MpV1]
 gi|312598906|gb|ADQ90930.1| hypothetical protein MpV1_007c [Micromonas sp. RCC1109 virus MpV1]
          Length = 443

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 89/263 (33%), Gaps = 29/263 (11%)

Query: 7   MRKIVFDIETTGLD-------------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53
           M+ I FD ET+GL                + R + + A       +   TF   + PN  
Sbjct: 4   MQYIAFDFETSGLPEGRRPVTPETLHQFDSCRAVSLSAARFSSRGRLVDTFDAIVYPNDF 63

Query: 54  KNSPEALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           + S  ++ +HGIT +   ++   F+ +F +F  F   +    +AHNAKFD   + +E+ R
Sbjct: 64  QISQGSIDVHGITQQRAEREGRPFTEVFLDFVRFIGPRTTTMVAHNAKFDTSVLRSEMIR 123

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              D      +    ++   +    +     +           + H +L D      VY 
Sbjct: 124 HRLDLHLIENLNFRCTMELYRERFLKPIKLGVLYEQIFGQPFENAHNSLADCIACGRVYP 183

Query: 173 KMMVGGSQINF---------GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR-ITKEELD 222
            ++     +                       +K+      L K+  P      TK+E  
Sbjct: 184 YIIGHERTLKPIGVPKVIIGASSVASAIGIGFKKQPELVEELWKKYSPKTFEGQTKDEKA 243

Query: 223 EHDKTIQTLGKNAIWDRYISSNQ 245
                +Q L      ++ +   +
Sbjct: 244 -----LQILNSKPNLEKILKDAE 261


>gi|282848807|ref|ZP_06258200.1| exonuclease [Veillonella parvula ATCC 17745]
 gi|282581461|gb|EFB86851.1| exonuclease [Veillonella parvula ATCC 17745]
          Length = 327

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 25/205 (12%)

Query: 7   MRKIVFDIE--------------T----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           M  IVFD+E              T    TG       II+IGAV+L +       F +F+
Sbjct: 1   MNYIVFDLEWNQPYSNDISFMKRTKMPLTG------EIIQIGAVKLNEKMDIIDHFTMFI 54

Query: 49  CPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            P    +      +L GIT   L     F +    F  +  ++       +    +   N
Sbjct: 55  KPQYLPRMHKHVRELTGITTHELNHGVPFKTAMQYFQKWCGDEYMLLSWGSDDILILREN 114

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             L ++     D       +   +R   S +  +    +   I+  H S H AL D+   
Sbjct: 115 LMLHKMKALSYDQWVDAQMIYSYQRYGTSQQYSVAHAMEDLNISTEHLSAHNALHDAVFT 174

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRF 192
           + +   + +    +++     E   
Sbjct: 175 AHICQTLDIAQGILHYDLIRKESSN 199


>gi|218709246|ref|YP_002416867.1| putative exonuclease [Vibrio splendidus LGP32]
 gi|218322265|emb|CAV18390.1| putative exonuclease [Vibrio splendidus LGP32]
          Length = 238

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
           IV D+ETTGLDS+ D I+ +G V+++     
Sbjct: 51 YIVLDLETTGLDSEQDLILSMGWVDVVKGRID 82


>gi|317485586|ref|ZP_07944462.1| exonuclease [Bilophila wadsworthia 3_1_6]
 gi|316923123|gb|EFV44333.1| exonuclease [Bilophila wadsworthia 3_1_6]
          Length = 169

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 64/171 (37%), Gaps = 10/171 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   D + D    +G  ++        T    + P  R+       +HGIT +
Sbjct: 6   YVALDFET--ADYQPDSACAVGLAKVRGGEVV-DTLYSLIRPPRRRV--LFTWVHGITWK 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+F   + +   F        +AHNA FD   + A  Q      L     + TL 
Sbjct: 61  DVQGSPTFLEFWPQMASFLQGVTH-LVAHNAPFDRRVLEACCQSNGIA-LPDLPFVCTLR 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +RRK     + L+++C+  G        H A  D+   + + I +     
Sbjct: 119 ESRRKLKLPSHKLDAVCRCCG---IPLDHHHAGSDAIAAARILIYLQGESQ 166


>gi|257068061|ref|YP_003154316.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
          [Brachybacterium faecium DSM 4810]
 gi|256558879|gb|ACU84726.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
          [Brachybacterium faecium DSM 4810]
          Length = 238

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLH 63
          FD ETTG +   DRI+ +  V  +   +   T     + P      P      
Sbjct: 16 FDTETTGTNVARDRIVTVALVHSVGPGREGETVATWLIDPEMEIPEPAQRVHG 68


>gi|94502355|ref|ZP_01308822.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
 gi|94451087|gb|EAT14045.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
          Length = 511

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 69/187 (36%), Gaps = 17/187 (9%)

Query: 9   KIVFDIETTGLDSKND------------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
            I+FD ETTGL    D            R++++  V L +  +        + P G +  
Sbjct: 2   YIIFDTETTGLPLPKDFNPPIINIINLPRLVKLSWVLLDEKLQLIELKDYIIKPEGYEIP 61

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
             + K+HGI+ ++  +K    +   E ++   +++   I HN  FD+  + AE  RINK 
Sbjct: 62  FNSTKIHGISTKYAIEKGIKINFVLEEFNLIIKKSNFLIGHNVFFDIKIVCAEFIRINKK 121

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVY 171
                + I         + + +                +       H +  D    +  +
Sbjct: 122 ISFFKKKIIDTKEISINYCAIKMGEKFKWPTLTELYKKLFNDTFIAHDSKSDVLATTKCF 181

Query: 172 IKMMVGG 178
            +++  G
Sbjct: 182 FELLRIG 188


>gi|289167702|ref|YP_003445971.1| ATP-dependent helicase DinG [Streptococcus mitis B6]
 gi|288907269|emb|CBJ22104.1| ATP-dependent helicase DinG [Streptococcus mitis B6]
          Length = 816

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIV-DHYTSDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD   +        +     +
Sbjct: 58  LTGLTDKRLAQAPDFSQVARKIFDLVKD--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q
Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMAQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|254429651|ref|ZP_05043358.1| exonuclease superfamily [Alcanivorax sp. DG881]
 gi|196195820|gb|EDX90779.1| exonuclease superfamily [Alcanivorax sp. DG881]
          Length = 215

 Score = 49.2 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK 39
          +  D ETTGLDS+   ++ I AV + D   
Sbjct: 46 VAIDCETTGLDSRTAELVSIAAVVIKDGRV 75


>gi|84386996|ref|ZP_00990019.1| DNA polymerase III, epsilon chain [Vibrio splendidus 12B01]
 gi|84378071|gb|EAP94931.1| DNA polymerase III, epsilon chain [Vibrio splendidus 12B01]
          Length = 238

 Score = 49.2 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 59/167 (35%), Gaps = 2/167 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITD 67
            IV D+ETTGLDS+ D I+ +G V+++       +   ++L  + + N+  A+  H    
Sbjct: 51  YIVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAKHIYLDNDSQINAETAVINHITPQ 110

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              +      ++ + F     +          +  +         +   PL     +   
Sbjct: 111 MLEEGASIHDAMLTFFEAAKGKIIVAHACMVEERFISQYLLRCYGLRAIPLLWLDTLCIE 170

Query: 128 SIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDSHLLSDVYIK 173
               +   +      +L            + H AL D+   +++++ 
Sbjct: 171 KSMEKAISNHEEVDLTLAGTRERYGLPEYNNHNALADAVSTAELFLA 217


>gi|330832545|ref|YP_004401370.1| Rad3-related DNA helicase [Streptococcus suis ST3]
 gi|329306768|gb|AEB81184.1| Rad3-related DNA helicase [Streptococcus suis ST3]
          Length = 837

 Score = 49.2 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E TG  +   +II+IG V + +      ++   + P           L GITD
Sbjct: 27  RYAVVDLEATGTGTD-AKIIQIGIVLVENGEII-DSYATDINP-YELLDDHIKNLTGITD 83

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
           + L   P F  + S  +D   +  A ++AHN KFD  
Sbjct: 84  QQLSQAPDFGQVASTIYDMIGD--AIFVAHNVKFDAN 118


>gi|77543206|gb|ABA87018.1| hypothetical protein [Vibrio cholerae]
 gi|259156499|gb|ACV96443.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Mex1]
          Length = 301

 Score = 49.2 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 81/238 (34%), Gaps = 17/238 (7%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSK-TNRTFQVFLCPNGRKNSP 57
           +  M  ++ D ETTGL + ++ IIE+G V++L                ++  P G+    
Sbjct: 49  EQPM--VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDP-GKPIPE 105

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              +L GITD+ ++ +    S+ + +       +   +AHNA+FD  F       +    
Sbjct: 106 LITELTGITDDMVRGQRIDDSLVASW----LSDDPLVVAHNAQFDRPFFEKRFAALGHLS 161

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              S           +       L  L   Y    +           HLL +    ++  
Sbjct: 162 WACSASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSE 221

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231
             +     +     F  ++                +K  +  I+++EL +    +  L
Sbjct: 222 ADRRTVLVRAFGAPFEVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279


>gi|322650293|gb|EFY46707.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
          Length = 205

 Score = 49.2 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 10  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 69

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +         A  +AHNA FD  F+ A   R +  
Sbjct: 70  IDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAGRASLK 129

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   G+       H AL D+   + ++ +++ 
Sbjct: 130 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVN 189

Query: 177 GGSQIN 182
              ++ 
Sbjct: 190 RWKRLG 195


>gi|322615086|gb|EFY12009.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619925|gb|EFY16798.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322622237|gb|EFY19082.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627759|gb|EFY24549.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632896|gb|EFY29640.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322636613|gb|EFY33316.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322641194|gb|EFY37836.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644871|gb|EFY41404.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322655865|gb|EFY52167.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660193|gb|EFY56432.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665242|gb|EFY61430.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669499|gb|EFY65647.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673425|gb|EFY69527.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322677353|gb|EFY73417.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322679984|gb|EFY76023.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687456|gb|EFY83428.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323194090|gb|EFZ79289.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198572|gb|EFZ83673.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202899|gb|EFZ87934.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208618|gb|EFZ93556.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211154|gb|EFZ96001.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217595|gb|EGA02310.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323218944|gb|EGA03454.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227078|gb|EGA11258.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229397|gb|EGA13520.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236896|gb|EGA20968.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240342|gb|EGA24386.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323242669|gb|EGA26690.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323250235|gb|EGA34126.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252445|gb|EGA36292.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323256463|gb|EGA40196.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323261433|gb|EGA45016.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323267209|gb|EGA50694.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323272728|gb|EGA56133.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 215

 Score = 49.2 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +         A  +AHNA FD  F+ A   R +  
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAGRASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +   + A       +  L+  C   G+       H AL D+   + ++ +++ 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVN 199

Query: 177 GGSQIN 182
              ++ 
Sbjct: 200 RWKRLG 205


>gi|195977857|ref|YP_002123101.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974562|gb|ACG62088.1| probable ATP-dependent helicase DinG [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 821

 Score = 49.2 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 8/181 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI +   +  V D+E T        II++G V +++  +   ++Q  + P+    S    
Sbjct: 1   MINEFSQKYAVIDLEATSPGP-TASIIQVGIV-IIEGKEIVDSYQTDVNPH-EPLSDHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS +    ++   +    ++AHN  FD   +   L     D L  
Sbjct: 58  ALTGITDQQLAQAPDFSQVARTIFELIED--CVFVAHNVTFDANLLAEALFLEGYDLL-- 113

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  +DT+ +A+  +PS      S      + ++    H A+ D+   ++++IK++     
Sbjct: 114 TPRVDTVELAQIFYPSLEKYSLSHLSEV-LDLNLSDAHTAIADAQATANLFIKLLHKIES 172

Query: 181 I 181
           +
Sbjct: 173 L 173


>gi|313892759|ref|ZP_07826340.1| exonuclease [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442690|gb|EFR61101.1| exonuclease [Veillonella sp. oral taxon 158 str. F0412]
          Length = 327

 Score = 49.2 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 71/205 (34%), Gaps = 25/205 (12%)

Query: 7   MRKIVFDIE--------------T----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           M  IVFD+E              T    TG       II+IGAV+L D       F +F+
Sbjct: 1   MNYIVFDLEWNQPYSNDISFMKRTKMPLTG------EIIQIGAVKLNDEMDIVDHFTMFI 54

Query: 49  CPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            P    +      +L GIT   L     F +    F ++  ++       +    +   N
Sbjct: 55  KPQYLPRMHKHVRELTGITSRELDHGVPFKTAMQHFQNWCGDEYMLLSWGSDDILILREN 114

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             L ++     D       +   +R   + +  +    +   I+  H S H AL D+   
Sbjct: 115 LMLHKMKALSYDQWVDAQMIYAYQRYGTNQQYSVAHAMEDLNISTEHLSAHNALHDAVFT 174

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRF 192
           + +  K+ +    +++     E   
Sbjct: 175 ARICQKLDIPQGILHYDQIRKESSN 199


>gi|302561692|ref|ZP_07314034.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
          Tu4000]
 gi|302479310|gb|EFL42403.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
          Tu4000]
          Length = 241

 Score = 49.2 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG+D +NDRI+    V         R  +  + P G      A ++HG+T+E L
Sbjct: 11 AFDTETTGVDVENDRIVSAALVVQDASGARPRVTRWLVNP-GVPVPAAATEVHGLTEEHL 69

Query: 71 KDKPSFSSIFSEFWD 85
          +    + +       
Sbjct: 70 QRNGRWPAPVMYEMA 84


>gi|268680225|ref|YP_003304656.1| DNA polymerase III subunit epsilon [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618256|gb|ACZ12621.1| DNA polymerase III, epsilon subunit [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 260

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 11/202 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  + DIE  G     D IIEIGAV +         F               ++L GIT 
Sbjct: 70  KFCIVDIEANGSKPALDAIIEIGAVMVEKGKIVGE-FSSLAK--TDVLPESIVQLTGITL 126

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L   PS +S+   F  F  +  A ++AHN  FD  FI+  L+     PL  +R +DT+
Sbjct: 127 EELSFAPSLNSVLEGFRLFIKD--AVFVAHNVNFDYYFISHSLEMAGFGPL-LNRRLDTI 183

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            +AR+   + +  L++L +  GIT    + H AL D+   ++V   ++   + +    +T
Sbjct: 184 DLARKCIEAPKYGLSALAEHLGITF--ENHHRALYDAKATTEV---LLHVFNNLPHEVQT 238

Query: 188 NEDRFFKEEKKTVPNISLLKRD 209
            E        +         ++
Sbjct: 239 VEQLIAFSRPQNQRKKKKESKN 260


>gi|78184888|ref|YP_377323.1| exonuclease [Synechococcus sp. CC9902]
 gi|78169182|gb|ABB26279.1| DNA polymerase III, epsilon subunit [Synechococcus sp. CC9902]
          Length = 307

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 10/164 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + D ETTGL+ +N   +E+GA+                L        P            
Sbjct: 80  ILDTETTGLEPENHCCVEVGAILFDVQSRAVLAQQSFLLPAETNAAEP-----INRIPAA 134

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P        ++    +     +AHNA FD  +                  ++ +  
Sbjct: 135 VTRLPQPWKQALLWFQNLLDAADVLVAHNAAFDRQWFGRGELPTVTQ--PWLCSMEDMRW 192

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              +   SR  +  L   YG+ +     H AL D   L++V+ +
Sbjct: 193 PADRQLRSRPSVRDLALAYGVPVWAA--HRALTDCIYLAEVFAR 234


>gi|291547443|emb|CBL20551.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Ruminococcus sp. SR1/5]
          Length = 318

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 62/194 (31%), Gaps = 22/194 (11%)

Query: 7   MRKIVFDIETTGL---DSKNDR---------IIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M  IVFD+E       +    R         IIEIGAV+L +  +   TFQ  + P    
Sbjct: 1   MNYIVFDLE----WNQNPDGRRHPDSRLPFEIIEIGAVKLNEKREIVDTFQCLIKPKVYH 56

Query: 55  NSPEALKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-----AHNAKFDVGFINA 108
              +++     +    L+    F      F ++  E+   +          + ++ + N 
Sbjct: 57  WIHDSIHEVIHVDYHELEKGIPFPRAIRRFLEWCGEEYRFFTWGDQDVMELQRNMKYYNL 116

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                        + + ++         S        +       HR+   A   + +L 
Sbjct: 117 LKLMPGPVHYYDVQKLFSIKFEDGISRRSLEYATDYLQLPKNRDFHRALADASYTARILL 176

Query: 169 DVYIKMMVGGSQIN 182
           ++    M+    ++
Sbjct: 177 EIDEACMIRHPSLD 190


>gi|51244817|ref|YP_064701.1| DNA polymerase III subunit epsilon [Desulfotalea psychrophila
          LSv54]
 gi|50875854|emb|CAG35694.1| probable DNA polymerase III, epsilon chain [Desulfotalea
          psychrophila LSv54]
          Length = 239

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPN 51
           +  D ETTGLD + D I+ IG +    +     +     + P+
Sbjct: 49 FVALDFETTGLDLQKDGILSIGLIPFDTHRIYCKKAAYWVINPH 92


>gi|152994734|ref|YP_001339569.1| exonuclease RNase T and DNA polymerase III [Marinomonas sp.
          MWYL1]
 gi|150835658|gb|ABR69634.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp.
          MWYL1]
          Length = 220

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT 43
           +V DIET+GLD K D I+  G V +        T
Sbjct: 28 YLVLDIETSGLDPKQDHIVSFGWVCIHKGVIELDT 62


>gi|153005992|ref|YP_001380317.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
 gi|152029565|gb|ABS27333.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
          Length = 213

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 6/170 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN--GRKNSPEALKLHGITD 67
             D+ET GLD+K D ++ IG V +     +    ++  + P+   R  S        +++
Sbjct: 31  AIDVETGGLDAKRDPLLAIGMVPVRAGRIRLGECYRTLVRPHAGTRITSASVTAHQLVSN 90

Query: 68  EFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +F    P       +     +     +   I                           ++
Sbjct: 91  DFEAAPPLGDVLPEVERRAREGALLFHHAAIDVAFLRRDFARTGLTWPSCPVVDTARLLV 150

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +     P     LN    R  + +     H AL D+   +++++ +
Sbjct: 151 RHAQLRDPTRPRDHIALNLSVARAELGLPEYQAHDALSDAIATAELFLAL 200


>gi|221069684|ref|ZP_03545789.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
 gi|220714707|gb|EED70075.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
          Length = 213

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 5/115 (4%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+  ++  R  E+  V L      +R FQ  +   G   SP   +L GIT+  
Sbjct: 7   VIDFETTGMTPAQGARATEVAIVLLEQGRVVDR-FQSLMQ-AGAWVSPFITELTGITNAM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           L+  P  + +  +   F         AHNA FD  F  AEL    +         
Sbjct: 65  LRTAPPAAEVMRDAARFVGGAPMV--AHNASFDSKFWQAELALAGEAAPQLFACT 117


>gi|89094457|ref|ZP_01167397.1| DNA polymerase III subunit epsilon [Oceanospirillum sp. MED92]
 gi|89081349|gb|EAR60581.1| DNA polymerase III subunit epsilon [Oceanospirillum sp. MED92]
          Length = 209

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 9  KIV-FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPN 51
          ++V  D ETT LD K   I+ IGAV++      ++    + L P 
Sbjct: 32 EVVSLDCETTSLDVKQGEIVSIGAVKIKGRKVLSSDRLDIKLKPP 76


>gi|261251373|ref|ZP_05943947.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
 gi|260938246|gb|EEX94234.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
          Length = 239

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGLDS ND II IG V    +    N+     + P  ++ + E++ +HGIT 
Sbjct: 49  FLAMDFETTGLDSDNDDIITIGTVPFNLNRIFINQAQHWTVRP-RKQLAEESVVIHGITH 107

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEW 94
             + D P  S I+ +  +  + +    
Sbjct: 108 SDVLDAPDLSGIYEQVLEQMSGKIMVV 134


>gi|311113524|ref|YP_003984746.1| exonuclease [Rothia dentocariosa ATCC 17931]
 gi|310945018|gb|ADP41312.1| exonuclease [Rothia dentocariosa ATCC 17931]
          Length = 409

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 5/164 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET           +I  +++ +    +R    +L P       E   LHGI+  
Sbjct: 242 YVAVDFETA-NSVSGASACQIALIKVQNGLVVDR-LVSYLKPPAELRRFEFTHLHGISAR 299

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P++  +      F         AHNA FD           N   +       T  
Sbjct: 300 TVRVAPTWVEVLPAITAFIGS--FPVYAHNASFDSKVWQELDDYYNVHTVPTHFFC-TYR 356

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +A++  P   N       +          H A  D+   + + +
Sbjct: 357 MAKKALPHLENHKLPTVIKACAPKFKLKHHKADSDAEACAYIVL 400


>gi|253572302|ref|ZP_04849705.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838077|gb|EES66165.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 188

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 63/190 (33%), Gaps = 9/190 (4%)

Query: 1   MIRK--NKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           M +K   +M+     D ET   + K   +  +G V + +     + +   + P     + 
Sbjct: 1   MFQKTAKRMKDFAAIDFET--ANGKRTSVCSVGVVIVRNGKIVKKIY-RLIRPCPNYYTQ 57

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
               +HG+T    ++   F  +++E     +      +AHN+ FD G + A  +      
Sbjct: 58  WTTAVHGLTYADTEEAEDFPDVWAEIKPLIDG--LPLVAHNSPFDEGCLKAVHELYEMTY 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +        +  +       N                + H AL D+   + + + ++  
Sbjct: 116 PNYKFYCTCRTSRKVFGKELPNHQLHTVAAR-CGYDLTNHHHALADAEACAQIALLIIPE 174

Query: 178 GSQINFGFKT 187
             +      T
Sbjct: 175 PKKPKVDLHT 184


>gi|172051553|emb|CAQ34948.1| hypothetical protein [Photobacterium damselae subsp. piscicida]
          Length = 302

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 78/232 (33%), Gaps = 15/232 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSK-TNRTFQVFLCPNGRKNSPEALKLH 63
           ++ D ETTGL + ++ IIE+G V++L                ++  P G+       +L 
Sbjct: 53  VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDP-GKPIPELITELT 111

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD+ ++ +     + + +       +   +AHNA+FD  F       +       S  
Sbjct: 112 GITDDMVQGQHIDDLLVASW----LSDDPLVVAHNAQFDRPFFEKRFAALGHLSWACSAS 167

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                    +       L  L   Y    +           HLL +    ++    +   
Sbjct: 168 GIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSEADRRTV 227

Query: 184 GFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231
             +     F  ++                +K  +  I+++EL +    +  L
Sbjct: 228 LVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279


>gi|269968066|ref|ZP_06182103.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827312|gb|EEZ81609.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 238

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            IV D+ETTGLDS+ + I+ +G VE+   +     +  +++  + +      +  H    
Sbjct: 51  FIVLDLETTGLDSEEEVILSMGWVEIRQGHIDLATSQHLYVHSDSKIKPETIVVNHITQQ 110

Query: 68  E 68
            
Sbjct: 111 M 111


>gi|317126517|ref|YP_004100629.1| exonuclease RNase T and DNA polymerase III [Intrasporangium
          calvum DSM 43043]
 gi|315590605|gb|ADU49902.1| Exonuclease RNase T and DNA polymerase III [Intrasporangium
          calvum DSM 43043]
          Length = 228

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          R +  D+ETTGLD + D I+ +G V +      
Sbjct: 43 RLLAVDLETTGLDPRTDHILTVGFVPVDGLVID 75


>gi|254516595|ref|ZP_05128654.1| ribonuclease T [gamma proteobacterium NOR5-3]
 gi|219675018|gb|EED31385.1| ribonuclease T [gamma proteobacterium NOR5-3]
          Length = 209

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 66/195 (33%), Gaps = 16/195 (8%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLD--YSKTNRTFQVFLCP-NG 52
           M  K++ R    ++ D+ET G  S  D I+E+ A  + + D  +   + T    + P  G
Sbjct: 1   MAMKSRFRGFLPVIIDMETGGFSSSTDAILELAATIIRMDDSGHVAVHETHSFNVAPFEG 60

Query: 53  RKNSPEALKLHGITDEFLKDKPS--------FSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
                 AL   GI       +             +            A  + HNA FD G
Sbjct: 61  ANIEQSALDFTGIDPWHPFREAHSEKDALAELFQVVRREIRDQECNRAILVGHNAHFDAG 120

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           F+NA ++R               +         +  L   C   GI   +   H A  D+
Sbjct: 121 FLNAAVERCEIKRNPFHPFSHFDTATLSGLAYGQTVLAKSCLEAGIPFDNEQAHSAAYDA 180

Query: 165 HLLSDVYIKMMVGGS 179
              ++++  ++    
Sbjct: 181 ERTAELFCSIVNRWQ 195


>gi|25027941|ref|NP_737995.1| putative DNA polymerase III epsilon subunit [Corynebacterium
          efficiens YS-314]
 gi|259506334|ref|ZP_05749236.1| DNA polymerase III, epsilon subunit [Corynebacterium efficiens
          YS-314]
 gi|23493224|dbj|BAC18195.1| putative DNA polymerase III epsilon subunit [Corynebacterium
          efficiens YS-314]
 gi|259166114|gb|EEW50668.1| DNA polymerase III, epsilon subunit [Corynebacterium efficiens
          YS-314]
          Length = 227

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK 39
            D+ETTGL     +I+ IG V +     
Sbjct: 47 AVDVETTGLKPDEHQIVSIGWVPVTGRVI 75


>gi|114562985|ref|YP_750498.1| DNA polymerase III subunit epsilon [Shewanella frigidimarina NCIMB
           400]
 gi|114334278|gb|ABI71660.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
           frigidimarina NCIMB 400]
          Length = 238

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +  D ETTGLDS+ + II IG V   L      +  + +L P  +      +   
Sbjct: 48  FVALDFETTGLDSQKNSIISIGLVPFTLQRIFCRKAKKWYLNPKDKLQEDSIIIHG 103


>gi|307327522|ref|ZP_07606708.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
          violaceusniger Tu 4113]
 gi|306886921|gb|EFN17921.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
          violaceusniger Tu 4113]
          Length = 274

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 12 FDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
          FD ETTGLD   DRI++   V +     +  R  +  + P G     EA K+HGIT +  
Sbjct: 15 FDTETTGLDVFKDRIVQAALVGQDRSGREVFRE-EWLINP-GILIPREATKIHGITSDRA 72

Query: 71 K 71
           
Sbjct: 73 M 73


>gi|302668948|ref|YP_003832773.1| exonuclease family protein [Butyrivibrio proteoclasticus B316]
 gi|302397288|gb|ADL36191.1| exonuclease family protein [Butyrivibrio proteoclasticus B316]
          Length = 302

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 73/194 (37%), Gaps = 12/194 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPE 58
           ++R NK+  I++D ETTG   K   I++I A++L   +      T   ++ P        
Sbjct: 25  VLRNNKVPIIIYDTETTGTG-KKAYIVQISALKLSPGNPYYIVDTLDQYIRPP-IPMPAA 82

Query: 59  ALKLHGITDEFLKDKP-------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           A  ++ ITDEFL+DKP          + F +  D            N   +  +  A   
Sbjct: 83  ASAVNHITDEFLEDKPSEEIALSWIQNFFGDPNDSVIAGYNHISFDNKMMNNMYQRAAGL 142

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK-HGALLDSHLLSDV 170
             +      + ++    + R +    R  L S+ + YGI      + H A+ D  +   V
Sbjct: 143 TFDPKWNVDALVMARCLVDRNEITDGRFTLASIAETYGIKTDEDQQLHNAMTDIQVTMKV 202

Query: 171 YIKMMVGGSQINFG 184
              ++         
Sbjct: 203 MWALINDYVDSGLE 216


>gi|305665063|ref|YP_003861350.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170]
 gi|88709815|gb|EAR02047.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170]
          Length = 461

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 8/170 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  IV DIETTG   K ++I EI   +   Y   +  F   + P   +       L GI 
Sbjct: 1   MYTIV-DIETTGNGIKGNKITEISIFKYDGYDIIDE-FTSLVNPEC-EIPYFITGLTGID 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++D P    I  +  +    ++  ++AH+  FD G I  EL+ I  D     + + T
Sbjct: 58  NDLVRDAPKLIEISHKILE--ITKDTIFVAHSVGFDYGVIKNELKTIGLD--FTRKKLCT 113

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           + ++R+  P   +          + I    +H A  D+H  + ++ K++ 
Sbjct: 114 VRLSRKLIPGYNSYSLGKI-CSALKIPLTDRHRARGDAHATTLLFQKLLR 162


>gi|322380763|ref|ZP_08054869.1| DNA polymerase III subunit epsilon [Helicobacter suis HS5]
 gi|321146767|gb|EFX41561.1| DNA polymerase III subunit epsilon [Helicobacter suis HS5]
          Length = 219

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 13/178 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPEALKL 62
               DIETTG   +N  +IEI A+            +  R+F   +  +  +  P+  +L
Sbjct: 36  YCFVDIETTGSKPENSSMIEIAALLYEPPKNPMHKGQIIRSFSSLI--HCLEVPPKITEL 93

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G++ + LK+ P   ++  +F  F  +    ++AHNA FD  FI+A   ++    L  + 
Sbjct: 94  TGLSTDDLKEAPPLEAVLQDFKLFIQD--HIFVAHNADFDFHFISACCAQVLDSAL-SNA 150

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            + TL++AR+  PS R+ L  L    G+ I     H A  D+     V+   +    Q
Sbjct: 151 KLCTLNLARKCIPSPRHGLQFLNTFLGLDIPIS--HRAYADALASLRVFEHCLRVLPQ 206


>gi|320332661|ref|YP_004169372.1| Exonuclease RNase T and DNA polymerase III [Deinococcus
           maricopensis DSM 21211]
 gi|319753950|gb|ADV65707.1| Exonuclease RNase T and DNA polymerase III [Deinococcus
           maricopensis DSM 21211]
          Length = 183

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 7/178 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--D 67
           I  D ET G+D     ++ +G V L D   T R   + +  +     PEA++++GI    
Sbjct: 7   IFLDTETGGMDPAVHPLLTVGLVTLQDGEIT-RPLHLRVRHDTYTVDPEAMRVNGIDLLT 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF----INAELQRINKDPLDPSRI 123
              +  P      +               HN  FD+GF    +    +      +D    
Sbjct: 66  HHDEAHPPAEVAAAIRAYAAEVGRVMLGGHNFAFDLGFLRTLLPDRSRVFRCGHVDTKTT 125

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
              L  A          L+ L K +GI             + ++ + ++K++      
Sbjct: 126 AQFLIHAGILPKKVGTALDQLAKHFGIEYQAHDALEDARTTAIVYNEFLKLVRAAPTT 183


>gi|227502443|ref|ZP_03932492.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49725]
 gi|306835006|ref|ZP_07468054.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
 gi|227076812|gb|EEI14775.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49725]
 gi|304569114|gb|EFM44631.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
          Length = 479

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 3/105 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +   ++TTG+     RI+ I AV   +     + F   L P           LHG+T  
Sbjct: 113 YVALTLQTTGIHPSTGRIVTIDAVAFDNAGDIGQRFHAVLKP---DIDAGPHHLHGLTVA 169

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
            ++  P+FS I        + +          +      A    +
Sbjct: 170 DIEQAPAFSRILKSLDKLIDGRTLVVHDIPYTWGFIVAEARRAMM 214


>gi|152970907|ref|YP_001336016.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238895421|ref|YP_002920156.1| exodeoxyribonuclease X [Klebsiella pneumoniae NTUH-K2044]
 gi|150955756|gb|ABR77786.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238547738|dbj|BAH64089.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 219

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 62/162 (38%), Gaps = 17/162 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++D   T       + P+ R  SP+A+ +H IT+E +
Sbjct: 4   VIDTETCGL---QGGIVEIASVDIVDGQIT-NPMSHLVRPD-RPISPQAMAIHRITEEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I   +       +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEEIIPHYH-----GSPWYVAHNASFDRRVLPEMHGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 S   L    K    T      H AL D ++ + + +
Sbjct: 107 WPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYITAALLL 148


>gi|19069923|emb|CAC38117.2| polymerase epsilon subunit like protein [Providencia rettgeri]
 gi|19882268|gb|AAM01212.1| putative 3'-5'exonuclease [IncJ plasmid R391]
 gi|20095154|gb|AAM08020.1| hypothetical protein [Providencia rettgeri]
 gi|262318129|dbj|BAI48455.1| hypothetical protein [Proteus mirabilis]
          Length = 302

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 80/238 (33%), Gaps = 17/238 (7%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSK-TNRTFQVFLCPNGRKNSP 57
           +  M  ++ D ETTGL + ++ IIE+G V++L                ++  P G+    
Sbjct: 49  EQPM--VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDP-GKPIPE 105

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              +L GITDE ++ +    ++ + +       +   +AHNA+FD  F       +    
Sbjct: 106 LITELTGITDEMVQGQRIDDALVASW----LSDDPLVVAHNAQFDRPFFEKRFAALGHLS 161

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              S           +       L  L   Y    +            LL +    ++  
Sbjct: 162 WACSASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFQLLPESVANLLSE 221

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231
             +     +     F  ++                +K  +  I+++EL +    +  L
Sbjct: 222 ADRRTVLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279


>gi|242064994|ref|XP_002453786.1| hypothetical protein SORBIDRAFT_04g017420 [Sorghum bicolor]
 gi|241933617|gb|EES06762.1| hypothetical protein SORBIDRAFT_04g017420 [Sorghum bicolor]
          Length = 246

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 6  KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
          +M  +  D+E TGLD   DRI+EI  + + D   T +
Sbjct: 64 RMPLVWIDLEMTGLDITKDRILEIACI-ITDGKLTKQ 99


>gi|59712989|ref|YP_205765.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114]
 gi|59481090|gb|AAW86877.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
          Length = 213

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 75/170 (44%), Gaps = 7/170 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETT L+  +  ++ I A+++  +   T++T  + L P  +  + +++K+H +  +
Sbjct: 31  VSIDCETTSLNPNHAELVSIAAIKIKNNRVLTSQTIHLKLTPP-QSLNSDSIKIHQLRHQ 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L    S     ++  +F   ++     ++ ++D   ++    R    PL  S I  +  
Sbjct: 90  DLHHGLSEQQAMTQLLEFIGNRHIV--GYHIRYDKKILDRACLRHFSHPLPNSLIEVSHI 147

Query: 129 IARRKH---PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +     P++  DL+       + +    +H AL D+   + +Y+++ 
Sbjct: 148 YHNKLERLLPNAYYDLSIEAISKHLGLPQADRHDALEDAIAAALIYVRLT 197


>gi|330957749|gb|EGH58009.1| ribonuclease T [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 225

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP------NGRKNSPEA 59
           +V D+ET G +S  D ++EI AV +      +     T+   + P               
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFAGANIEAAALEFTG 92

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116
           +KL       + ++ + + IF                 + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETALNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    R  H A  D+   ++++  ++ 
Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212

Query: 177 GGSQIN 182
              ++ 
Sbjct: 213 RWKEMG 218


>gi|326385272|ref|ZP_08206935.1| DNA polymerase III subunit epsilon [Gordonia neofelifaecis NRRL
          B-59395]
 gi|326196015|gb|EGD53226.1| DNA polymerase III subunit epsilon [Gordonia neofelifaecis NRRL
          B-59395]
          Length = 236

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN 41
          R +  D+ETTGL++     +EIGAVE+L+     
Sbjct: 4  RYVALDLETTGLNTLTACPLEIGAVEILENDPRG 37


>gi|313906420|ref|ZP_07839758.1| Exonuclease RNase T and DNA polymerase III [Eubacterium
           cellulosolvens 6]
 gi|313468755|gb|EFR64119.1| Exonuclease RNase T and DNA polymerase III [Eubacterium
           cellulosolvens 6]
          Length = 221

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 7   MRKIVFDIETTGLDSKND--RI-----IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M+ IV D+E   +  K++  RI     IEIGAV L D  +    F+ ++ P         
Sbjct: 1   MKHIVVDLEMNSISRKSEARRICNLETIEIGAVMLDDDLQEISCFRTYVKPEYADGIAGN 60

Query: 60  LKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
           + +  GITD+ +++ P F+     F ++          H  
Sbjct: 61  ITILTGITDDMVENAPKFNEALRMFTNWCLGTGDAVTIHAW 101


>gi|317052331|ref|YP_004113447.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
 gi|316947415|gb|ADU66891.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
          Length = 166

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 5/164 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D ET   + +      IG V + +     R +   + P   + +     +HG+T   +
Sbjct: 6   AIDFET--ANEQRTSACAIGVVVVENRQIV-RQYARLIRPEPMRFASFNTAVHGLTAADV 62

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P F  ++ E            +AHN  FD+  +   L+        P  +       
Sbjct: 63  AGAPVFGELWPEIAADIVS-APLLVAHNTSFDMSVLQHCLRSSGIAANIPDAVCSCRMAK 121

Query: 131 RRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIK 173
           +       + LN+LCK +GI    H +   A   + ++ ++Y +
Sbjct: 122 KLLPQLVNHKLNTLCKHFGIPLNHHDALSDAQAAARIILELYQE 165


>gi|269797822|ref|YP_003311722.1| exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM
           2008]
 gi|269094451|gb|ACZ24442.1| Exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM
           2008]
          Length = 327

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 25/205 (12%)

Query: 7   MRKIVFDIE--------------T----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           M  IVFD+E              T    TG       II+IGAV+L +       F +F+
Sbjct: 1   MNYIVFDLEWNQPYSNDISFMKRTKMPLTG------EIIQIGAVKLNEKMDIIDHFTMFI 54

Query: 49  CPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            P    +      +L GIT   L     F +    F  +  ++       +    +   N
Sbjct: 55  KPQYLPRMHKHVRELTGITTHELNHGVPFKTAMQYFQKWCGDEYMLLSWGSDDILILREN 114

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             L ++     D       +   +R   S +  +    +   I+  H S H AL D+   
Sbjct: 115 LMLHKMKALSYDQWVDAQIIYSYQRYGTSQQYSVAHAMEDLNISTEHLSAHNALHDAVFT 174

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRF 192
           + +   + +    +++     E   
Sbjct: 175 AHICQTLDIAQGILHYDLIRKESSN 199


>gi|260779555|ref|ZP_05888445.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
          BAA-450]
 gi|260604364|gb|EEX30668.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
          BAA-450]
          Length = 210

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC-PNGRKNSPEALKLHGI 65
           +  D ETT LD K   ++ I A +++ +   T++ F+V L  P    ++   +     
Sbjct: 30 YVSLDCETTSLDPKRAELVTIAATKIIDNRIITSQPFEVRLRAPQSLDSNSVKIHQIRH 88


>gi|27364640|ref|NP_760168.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
 gi|320155034|ref|YP_004187413.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
 gi|27360785|gb|AAO09695.1| DNA polymerase III epsilon subunit [Vibrio vulnificus CMCP6]
 gi|319930346|gb|ADV85210.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
          Length = 211

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 73/176 (41%), Gaps = 7/176 (3%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N    +  D ETT LD     ++ I A +++ +   T++ F+V L    +     ++K+H
Sbjct: 26  NNKEYVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLR-APQSLDSGSVKIH 84

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I  + L D  S      +  DF    N   + ++ ++D   ++    R    PL    +
Sbjct: 85  KIRHQDLVDGLSEKEALLKLIDFI--GNRPLVGYHIRYDKKILDLACLRHLGFPLANPLV 142

Query: 124 IDTLSIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             +        +  P++  DL+       + +  + KH AL D+   + V++++  
Sbjct: 143 EVSQIYHDKLEKHLPNAYFDLSLDAICRHLDLPIQDKHDALQDAIAAALVFVRLTR 198


>gi|78212673|ref|YP_381452.1| DNA polymerase III, epsilon subunit [Synechococcus sp. CC9605]
 gi|78197132|gb|ABB34897.1| Exonuclease [Synechococcus sp. CC9605]
          Length = 280

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 67/219 (30%), Gaps = 14/219 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHGITDE 68
           + D ET+GLD + D+ +E+G +       +      Q FL P        A +       
Sbjct: 53  IIDTETSGLDPQQDQCLELGCILFD--VPSRSVLAQQSFLLP----VDSNAAEPINRIPA 106

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P        +++   +     +AHNA FD  +       +          +D + 
Sbjct: 107 AVTRRPQPWREALVWFEHLLDAADLLVAHNAAFDRQWFGLG--VVPATATPWLCTMDDIR 164

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALL----DSHLLSDVYIKMMVGGSQINFG 184
               +    R  +  L   YG+ +    +  +      D     D    ++  G +    
Sbjct: 165 WPAERQLRLRPSVRDLALAYGVPVWAAHRALSDCIYIADVFARCDDLEHLLKRGLEPRQL 224

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
            +       +   K                R++  E+ E
Sbjct: 225 MRARVSFDERHLAKAAGFHWNDPIKGAWTRRLSAREVAE 263


>gi|37681316|ref|NP_935925.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016]
 gi|37200067|dbj|BAC95896.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
          Length = 213

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 73/176 (41%), Gaps = 7/176 (3%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N    +  D ETT LD     ++ I A +++ +   T++ F+V L    +     ++K+H
Sbjct: 28  NNKEYVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLR-APQSLDSGSVKIH 86

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I  + L D  S      +  DF    N   + ++ ++D   ++    R    PL    +
Sbjct: 87  KIRHQDLVDGLSEKEALLKLIDFI--GNRPLVGYHIRYDKKILDLACLRHLGFPLANPLV 144

Query: 124 IDTLSIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             +        +  P++  DL+       + +  + KH AL D+   + V++++  
Sbjct: 145 EVSQIYHDKLEKHLPNAYFDLSLDAICRHLDLPIQDKHDALQDAIAAALVFVRLTR 200


>gi|307702203|ref|ZP_07639163.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis
           ATCC 35037]
 gi|307624216|gb|EFO03193.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis
           ATCC 35037]
          Length = 829

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 76/181 (41%), Gaps = 8/181 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + +    ++ +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIENGEIIDQ-YATDVNPH-EPLDSHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + ++   +    ++AHN +FD   +   L     +   P       
Sbjct: 64  QRLAVAPEFSQVAGKIFELVKD--GIFVAHNVQFDANLLAEFLFFEGYELRTPRVDT-VE 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                     + +L  LC+  GI + H   H AL D+   +++ + M     ++  G   
Sbjct: 121 LAQVLYPQFEKYNLGILCQELGIELEHA--HTALSDAQATAELLLYMRQKLFELPKGLLE 178

Query: 188 N 188
           +
Sbjct: 179 S 179


>gi|218548595|ref|YP_002382386.1| exodeoxyribonuclease X [Escherichia fergusonii ATCC 35469]
 gi|218356136|emb|CAQ88753.1| DNA exonuclease X [Escherichia fergusonii ATCC 35469]
 gi|324113580|gb|EGC07555.1| exonuclease [Escherichia fergusonii B253]
 gi|325497013|gb|EGC94872.1| exodeoxyribonuclease X [Escherichia fergusonii ECD227]
          Length = 220

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 17/166 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++D   T       + P+ R  +P+A+ +H IT+  +
Sbjct: 4   VIDTETCGL---QGGIVEIASVDVVDGKIT-NPMSHLVRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEEVIPHYY-----GSDWYVAHNASFDRRVLPEMPGEWICT-------MKLSRHL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                 S   L    K    T      H AL D ++ + + I +M 
Sbjct: 107 WPGIKYSNMALYKSRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152


>gi|323499174|ref|ZP_08104152.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
 gi|323315807|gb|EGA68840.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
          Length = 239

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGLDS+ D II IG V   L+    N+     + P  +  + E++ +HGIT 
Sbjct: 49  FLAMDFETTGLDSEQDDIITIGTVPFTLNRILVNQAKHWTVRP-RKPLAEESVVIHGITH 107

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEW 94
             + D P  + ++ +     + +    
Sbjct: 108 SDVLDAPDLTEVYPQVLAEMSNRIMVV 134


>gi|239939981|ref|ZP_04691918.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
          15998]
 gi|239986465|ref|ZP_04707129.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
          11379]
 gi|291443411|ref|ZP_06582801.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
          15998]
 gi|291346358|gb|EFE73262.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
          15998]
          Length = 241

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG+D + DRI+    V         R  +  + P G    P A ++HG+ D+ L
Sbjct: 11 AFDTETTGVDVERDRIVSAALVAQDTAGGRVRVTRWLVNP-GIPVPPGATEIHGLADDHL 69

Query: 71 KDKPSFSSIFS 81
          +    + +   
Sbjct: 70 QRNGRWPAPVM 80


>gi|150390277|ref|YP_001320326.1| exonuclease, RNase T and DNA polymerase III [Alkaliphilus
           metalliredigens QYMF]
 gi|149950139|gb|ABR48667.1| Exonuclease, RNase T and DNA polymerase III [Alkaliphilus
           metalliredigens QYMF]
          Length = 192

 Score = 48.8 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 62/188 (32%), Gaps = 22/188 (11%)

Query: 7   MRKIVFDIE------------------TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           M+ I+FD E                  T  L  +   IIEIGAV+  D  +   TFQ+F+
Sbjct: 1   MKYIIFDFEFNSAFRIDRKTKRLMKGNTNPLCPQ--EIIEIGAVKTNDEFEIEETFQMFV 58

Query: 49  CPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            P    K  P+  K   IT+E L    S +S  +    + NE      +           
Sbjct: 59  RPVLYTKLHPKVKKKTQITNEDLLGGKSLNSSITALQHWINEDEFIMCSWGKDDINELKR 118

Query: 108 AE-LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
                 I  + +D    I  + +     P  +                   H AL DS  
Sbjct: 119 NCSFFEIQTNWIDKYCDIQKMCMNYLDLPKGKQIGLKKAVETFNIEIDSRFHKALNDSIY 178

Query: 167 LSDVYIKM 174
            + +  K+
Sbjct: 179 TAKILKKL 186


>gi|325963971|ref|YP_004241877.1| DNA polymerase III subunit epsilon [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470058|gb|ADX73743.1| DNA polymerase III, epsilon subunit [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 236

 Score = 48.8 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 69/215 (32%), Gaps = 5/215 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEA 59
           M   N + +  FD+ETTG +S+  RI+   +V ++D+  +  R  +    P     +  +
Sbjct: 1   MSTWNTLPRAAFDLETTGRNSRAARIVT-ASVTVVDHQAEVMREHEWLADPGVEIPTEAS 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFW---DFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
                 T++  ++      +  E         + N   IA NA +D   + AE  R    
Sbjct: 60  DVHGITTEQARREGRPAHEVTREVAAALQELFDSNIPVIAFNASYDFTVLAAESARYGIP 119

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            L    ++D   + ++     +             +   + H +  D+     V   M  
Sbjct: 120 QLTRFPVLDPYIMNKQVDRYRKGKRTLTALCEEYGVVLDNAHTSAADALATLRVLDAMAG 179

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
              +++                   +     R   
Sbjct: 180 KFPKLSMPASQLHQLQVDWAVSQAADFQGYLRKTK 214


>gi|148977184|ref|ZP_01813811.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
 gi|145963466|gb|EDK28729.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
          Length = 210

 Score = 48.8 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66
           +  D ETT LD     ++ I A +++ +   T++ F+V L  P     +   +      
Sbjct: 30 YVSLDCETTSLDPNQAELVTIAATKIIGNRIITSKPFEVRLRAPQSLDCNSIKIHRIRHQ 89


>gi|260774372|ref|ZP_05883286.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP
          69.14]
 gi|260610499|gb|EEX35704.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP
          69.14]
          Length = 215

 Score = 48.8 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQ 45
          I  D ETT LD +   ++ I A +++ +   T++ F 
Sbjct: 31 ISLDCETTSLDPQRAELVSIAATKIIDNRILTSQAFH 67


>gi|149912277|ref|ZP_01900850.1| exonuclase [Moritella sp. PE36]
 gi|149804647|gb|EDM64704.1| exonuclase [Moritella sp. PE36]
          Length = 234

 Score = 48.8 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFL 48
            D ETTGL++K D I+ IG VEL       +  +   +
Sbjct: 48 AVDFETTGLNAKQDNILSIGYVELAGSKIRLDSCYHQIV 86


>gi|320159156|ref|YP_004191534.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
 gi|319934468|gb|ADV89331.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
          Length = 238

 Score = 48.8 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 20/26 (76%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVEL 34
           +  D ETTGLD+K+D+I+ IG V+L
Sbjct: 52 FLALDFETTGLDAKHDKILSIGMVDL 77


>gi|262041960|ref|ZP_06015142.1| exodeoxyribonuclease 10 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040658|gb|EEW41747.1| exodeoxyribonuclease 10 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 219

 Score = 48.8 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 62/162 (38%), Gaps = 17/162 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++D   T       + P+ R  SP+A+ +H IT+E +
Sbjct: 4   VIDTETCGL---QGGIVEIASVDIVDGQIT-NPMSHLVRPD-RPISPQAMAIHRITEEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I   +       +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEEIIPHYH-----GSRWYVAHNASFDRRVLPEMHGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 S   L    K    T      H AL D ++ + + +
Sbjct: 107 WPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYITAALLL 148


>gi|27367317|ref|NP_762844.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
 gi|27358886|gb|AAO07834.1| DNA polymerase III epsilon subunit [Vibrio vulnificus CMCP6]
          Length = 245

 Score = 48.8 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 20/26 (76%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVEL 34
           +  D ETTGLD+K+D+I+ IG V+L
Sbjct: 53 FLALDFETTGLDAKHDKILSIGMVDL 78


>gi|259156611|gb|ACV96554.1| exonuclease, RNase T and DNA polymerase III [Vibrio fluvialis Ind1]
          Length = 301

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 81/238 (34%), Gaps = 17/238 (7%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSK-TNRTFQVFLCPNGRKNSP 57
           +  M  ++ D ETTGL + ++ IIE+G V++L                ++  P G+    
Sbjct: 49  EQPM--VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDP-GKPIPE 105

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              +L GITDE ++ +    ++ + +       +   +AHNA+FD  F       +    
Sbjct: 106 LITELTGITDEMVQGQHIDDALVASW----LSDDPLVVAHNAQFDRPFFEKRFAALGHLS 161

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              S           +       L  L   Y    +           HLL +    ++  
Sbjct: 162 WACSASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSE 221

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231
             +     +     F  ++                +K  +  I+++EL +    +  L
Sbjct: 222 ADRRTVLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279


>gi|222152791|ref|YP_002561968.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus uberis 0140J]
 gi|222113604|emb|CAR41463.1| putative ATP-dependent DNA helicase [Streptococcus uberis 0140J]
          Length = 831

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 16/228 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MI++ + +  V D+E T  ++     II++G V +L   +   TFQ  + P+    S   
Sbjct: 12  MIKEFEKKYAVIDLEAT--NAGSTASIIQVGIV-ILQGGEIRETFQTDVNPH-EPLSEHI 67

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             L GI+DE L   P FS +    +D  ++    ++AHN KFD   +        +    
Sbjct: 68  KSLTGISDEQLSKAPDFSQVAKTIYDLIHD--CIFVAHNVKFDANLLA--ESLFFEGFEL 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +  IDT+ +A+  +P+      S+     + +     H A+ D+   + +++K+    S
Sbjct: 124 RTPRIDTVELAQVFYPTFEKYNLSVLSSE-LGLDLSDAHTAIADAIATAKLFLKLQEKIS 182

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE---ELDEH 224
           QI        +         +     + RD  +  +   E   E   H
Sbjct: 183 QIPLE---TLEGLADLSDNLIFETGQMIRDALIEAKPYDERIYEKVNH 227


>gi|182439793|ref|YP_001827512.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|326780457|ref|ZP_08239722.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
          griseus XylebKG-1]
 gi|178468309|dbj|BAG22829.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
          subsp. griseus NBRC 13350]
 gi|326660790|gb|EGE45636.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
          griseus XylebKG-1]
          Length = 241

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG+D + DRI+    V         R  +  + P G    P A ++HG+TD+ L
Sbjct: 11 AFDTETTGVDVEQDRIVSAALVAQDTAGGRVRVTRWLVNP-GVPVPPGATEVHGLTDDHL 69

Query: 71 KDKPSFSSIFS 81
          +    + +   
Sbjct: 70 QRNGRWPAPVM 80


>gi|163857665|ref|YP_001631963.1| putative exonuclease [Bordetella petrii DSM 12804]
 gi|163261393|emb|CAP43695.1| putative exonuclease [Bordetella petrii]
          Length = 177

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
          D+ETTGL + +  I+E  AV +       R F   +   G     
Sbjct: 12 DLETTGLSTASCEILEFAAVHVGPDGAIEREFSQVVRTRGTVPPF 56


>gi|319760500|ref|YP_004124438.1| ribonuclease T [Candidatus Blochmannia vafer str. BVAF]
 gi|318039214|gb|ADV33764.1| ribonuclease T [Candidatus Blochmannia vafer str. BVAF]
          Length = 221

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 18/191 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLC--PNGRKNSPEALKLH 63
           +V D+ET GL++  D ++EI  + L      +   +      +   P    +        
Sbjct: 21  VVIDVETAGLNANTDALLEIATITLKMDSDGWLCMDNVLHFNIKSFPGANLHPSALALNK 80

Query: 64  -------GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ----- 111
                         +       + +          A  +AHNA FD  FI A ++     
Sbjct: 81  IDPNNPLRFAVTEQEALNEIFKMVNMGIKIHECHKAIIVAHNASFDHSFIMAAIERISDT 140

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             N +       +   + A       +  L + CK  GI       H AL D+   + ++
Sbjct: 141 NNNMNVNPFHPFVTFDTAALSGLVFGQTVLATACKHAGIVFDKSKAHSALYDTEKTAILF 200

Query: 172 IKMMVGGSQIN 182
            +++    ++ 
Sbjct: 201 CELVNIWKRLG 211


>gi|323526920|ref|YP_004229073.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
          CCGE1001]
 gi|323383922|gb|ADX56013.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
          CCGE1001]
          Length = 203

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTF 44
          ++ M  +  D+E TGLD  +DRIIEI  V      D       F
Sbjct: 15 RSDMNLVWLDMEMTGLDPDSDRIIEIAVVVTNSTLDRMVEGPVF 58


>gi|212212262|ref|YP_002303198.1| exodeoxyribonuclease I [Coxiella burnetii CbuG_Q212]
 gi|212010672|gb|ACJ18053.1| exodeoxyribonuclease I [Coxiella burnetii CbuG_Q212]
          Length = 458

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 44/155 (28%), Gaps = 3/155 (1%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEA 59
           +  ++   + +D+ETTGL+   D+II+  A+   +        ++ +   P+   +    
Sbjct: 1   MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILIRLNPDVIPSPEAM 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +  H  + + +    +      E     N      + +N               N  P  
Sbjct: 61  II-HRFSIDQMLSGKAEIEAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPPY 119

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154
             +  +          +    L             
Sbjct: 120 THQYDNFCRRMDLYPLTILYYLFKPNALNWPDPFD 154


>gi|113955550|ref|YP_730762.1| DNA polymerase III subunit epsilon [Synechococcus sp. CC9311]
 gi|113882901|gb|ABI47859.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp.
           CC9311]
          Length = 263

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 76/220 (34%), Gaps = 16/220 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + D ET+GLD +    +EIGA+       +        L          A +        
Sbjct: 42  IIDTETSGLDPEAHHCLEIGAILFDVSSRQILAQMSCLL-----PVESNAAEAINRIPAA 96

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P        ++    +     +AHNA FD  +       +    L     ++ +  
Sbjct: 97  VTRLPQPWEPGLHYFQELLKAADLLVAHNAAFDQQWFGRG--HLPATDLPWLCSMEDMRW 154

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQINFGFKT 187
            + K   SR  +  L   Y I +     H AL D   L++V+ +   +    +     ++
Sbjct: 155 PKEKQLRSRPSVRDLALAYEIPVWAA--HRALSDCIYLAEVFRRCDQLEQLIERGLEPRS 212

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF----TRITKEELDE 223
                   + + +   +  + + P+      R+++ E++E
Sbjct: 213 LMKAQVSYDDRQLARDAGFRWNDPVKGAWTRRLSEREVNE 252


>gi|94496850|ref|ZP_01303425.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease
          [Sphingomonas sp. SKA58]
 gi|94423863|gb|EAT08889.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease
          [Sphingomonas sp. SKA58]
          Length = 312

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL 35
          +  D+ETTGLD + DRIIE+      
Sbjct: 67 VAVDVETTGLDRETDRIIELAVQRFR 92


>gi|154174963|ref|YP_001408508.1| DNA polymerase III subunit epsilon [Campylobacter curvus 525.92]
 gi|112803051|gb|EAU00395.1| nickel transport permease component NikD [Campylobacter curvus
           525.92]
          Length = 273

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 15/210 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIET+G  +   +IIEIGA+++ +  +  R F+ F+  +         +L GI+   L
Sbjct: 78  IVDIETSGGITSG-QIIEIGALKIKNGVEIGR-FESFV--DAPFVPENITQLTGISQSDL 133

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              PS  S+   F        + ++AHN  FD GFI+  L  I    L  +R + T+ ++
Sbjct: 134 TGAPSLKSVLERF--KIFLGTSVFVAHNVNFDYGFISQSLSNIGLGML-LNRKLCTIDLS 190

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           RR   S +  L SL +  G    + + H AL D+   +++   + +  S++ F  ++ ED
Sbjct: 191 RRTIASQKYGLGSLKELLG---INNTHHRALNDAIAATEI---LKICISRLPFSIQSVED 244

Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
                  KT P++ L        +    +E
Sbjct: 245 LINFS--KTAPSMKLKPEPSLQNSDAIADE 272


>gi|197335542|ref|YP_002157176.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11]
 gi|197317032|gb|ACH66479.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11]
          Length = 213

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 75/170 (44%), Gaps = 7/170 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETT L+  +  ++ I A+++  +   T++T  + L P  +  + +++K+H +  +
Sbjct: 31  VSIDCETTSLNPNHAELVSIAAIKIKNNRVLTSQTIHLKLTPP-QSLNSDSIKIHQLRHQ 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L    S     ++  +F    N   + ++ ++D   ++    R    PL  S I  +  
Sbjct: 90  DLHHGLSEQQAMTQLLEFI--GNRPIVGYHIRYDKKILDRACLRHFSHPLPNSLIEVSHI 147

Query: 129 IARRKH---PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +     P++  DL+       + +    +H AL D+   + +Y+++ 
Sbjct: 148 YHNKLERLLPNAYYDLSIEAISKHLGLPQTERHDALEDAIAAALIYVRLT 197


>gi|170696330|ref|ZP_02887460.1| Exonuclease RNase T and DNA polymerase III [Burkholderia graminis
           C4D1M]
 gi|170138736|gb|EDT06934.1| Exonuclease RNase T and DNA polymerase III [Burkholderia graminis
           C4D1M]
          Length = 203

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 51/195 (26%), Gaps = 9/195 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ M  +  D+E TGLD  +DRIIEI  V      D                 ++     
Sbjct: 15  RSDMNLVWLDMEMTGLDPDSDRIIEIAVVVTNSTLDRMAEGPVL------AIHQSDETLA 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K+                + +                      G        I +D    
Sbjct: 69  KMDQWNQNTHGRSGLIDRVKASTVSEIEATEQIRAFLAQYVPPGKSPMCGNSICQDRRFM 128

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +R +  L           + L  LC+R+   I    +  A+  +       I  +    +
Sbjct: 129 ARWMPELETFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYRE 188

Query: 181 INFGFKTNEDRFFKE 195
                   +     E
Sbjct: 189 HFLIPPAPDASMNAE 203


>gi|37677065|ref|NP_937461.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
 gi|37201610|dbj|BAC97431.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
          Length = 239

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 20/26 (76%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVEL 34
           +  D ETTGLD+K+D+I+ IG V+L
Sbjct: 53 FLALDFETTGLDAKHDKILSIGMVDL 78


>gi|167752075|ref|ZP_02424202.1| hypothetical protein ALIPUT_00317 [Alistipes putredinis DSM 17216]
 gi|167660316|gb|EDS04446.1| hypothetical protein ALIPUT_00317 [Alistipes putredinis DSM 17216]
          Length = 164

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 49/169 (28%), Gaps = 6/169 (3%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+  +  D ET   + +   I  +G V + +     + +   + P     S    ++HG+
Sbjct: 1   MKDFVAIDFET--ANRERTSICSVGLVRVENGDIREKIY-RLIRPYPDYYSSWNTRIHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T         F  ++++            +AHN+ FD G + A  ++      D      
Sbjct: 58  TYRDTAHAAPFPEVWADISPELAG--LPLVAHNSPFDEGCLKAAFRQYGMAYPDYRFFCT 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +  R       N                  H             + +
Sbjct: 116 CRASRRVFGRELPNHQLQTVAARCGFDLRDHHHALADAEACAWIARLIL 164


>gi|315182194|gb|ADT89107.1| DNA polymerase III, alpha subunit [Vibrio furnissii NCTC 11218]
          Length = 184

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 8/161 (4%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSE 82
            DR IEIGAV+L+D      TFQ  + P G + S       GIT+  L+  P    + +E
Sbjct: 2   GDRAIEIGAVKLVDGQVAG-TFQQLMNP-GFRVSGFIEGYTGITNTMLRTAPRCEEVMAE 59

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTLSIARRKHPSSRNDL 141
           F  F  +     +AHNA FD  F++AE  RI        +  +       +  P+ +   
Sbjct: 60  FAHFIGD--TPLVAHNASFDKRFLDAEFDRIGVRYPGQFACSMLIARRLIQNAPTHKLGD 117

Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
               K+     +  + H AL DS + + +++ M+    +  
Sbjct: 118 LVRFKQI---ENDGTFHRALADSQMTASLWMLMVNDLRERG 155


>gi|261210416|ref|ZP_05924710.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
 gi|260840474|gb|EEX67040.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
          Length = 209

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 76/171 (44%), Gaps = 7/171 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD K   ++ I A +++ +   T++ F+V LC   +     ++++H I  
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIIDNRILTSQPFEVRLC-APQSLDSGSVRIHKIRH 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L+D  S      +  DF    N   + ++ ++D   ++   ++    PL    I  + 
Sbjct: 89  QDLQDGLSEKEALIQLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQ 146

Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                  +  P++  DL+       + +  + KH AL D+   + V++++ 
Sbjct: 147 IYHDKLEKHLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIAAALVFVRLT 197


>gi|254507936|ref|ZP_05120065.1| exonuclease, RNase T and DNA polymerase III [Vibrio
          parahaemolyticus 16]
 gi|219549172|gb|EED26168.1| exonuclease, RNase T and DNA polymerase III [Vibrio
          parahaemolyticus 16]
          Length = 239

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP 50
           +  D ETTGLDS+ D II IG V   L+    N+     + P
Sbjct: 49 FLAMDFETTGLDSEQDDIITIGTVPFTLNRVLINQAKHWTVRP 91


>gi|160935985|ref|ZP_02083359.1| hypothetical protein CLOBOL_00882 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441227|gb|EDP18944.1| hypothetical protein CLOBOL_00882 [Clostridium bolteae ATCC
           BAA-613]
          Length = 337

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 57/180 (31%), Gaps = 12/180 (6%)

Query: 7   MRKIVFDIE-TTGLDSKND-------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  IVFD+E     + K D        IIEIGAV+L    +   TF   + P   K    
Sbjct: 1   MNYIVFDLEWNQSPNGKEDSVEHLPFEIIEIGAVKLNGNFEQTGTFHKLIRPKVYKKMHF 60

Query: 59  ALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRIN 114
            +      D     ++   F  + + F  +  E+   +    +    ++    A  +  N
Sbjct: 61  KISEVTHMDMAELRQEGEPFDVVMNRFLAWCGEEEYCFCTWGSMDLTELQRNMAYHKLPN 120

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P     +        +           +  +       R  H AL D++    +   +
Sbjct: 121 PFPRPLLYLDIQKLYCLQYGDGKNKVSLDMAVQIQGMEEERPFHRALDDAYYTGRILSVL 180


>gi|54301691|ref|YP_131684.1| hypothetical protein PBPRB0011 [Photobacterium profundum SS9]
 gi|46915111|emb|CAG21884.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 191

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 5/156 (3%)

Query: 8   RKIVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R + FD+E      G D K   IIEIG  EL  D  +  R  Q ++ P   + S    +L
Sbjct: 10  RIVCFDLEMCCWNDGRDPKTGEIIEIGLAELDLDTGEIVRRTQHYVKPEHDEISEFCTEL 69

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI  + +       +      +       +  A     D         +  K P     
Sbjct: 70  TGIKPQVIHKNGKPLAEILRSMESKFGGKHKIYAAWGHDDRILHAECAAKGLKVPFTEYI 129

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            +  +   +R     R    +  +  G+    R   
Sbjct: 130 NLAMIFRLQRHVKKKRCGQRAAMEIAGLEWEGRQHS 165


>gi|261210981|ref|ZP_05925271.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
 gi|260839956|gb|EEX66556.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
          Length = 233

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP 50
          +  D ETTGL+ + + I+ +G V                + P
Sbjct: 45 VALDFETTGLNPQQEAILSVGLVPFTTSRIALKEARYWLVKP 86


>gi|330720110|gb|EGG98518.1| Ribonuclease T [gamma proteobacterium IMCC2047]
          Length = 187

 Score = 48.4 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 62/184 (33%), Gaps = 13/184 (7%)

Query: 15  ETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF 69
           ET G ++  D ++EI AV +            T    + P  G      A+K  GI    
Sbjct: 2   ETGGFNAATDALLEIAAVPIQMDEQGLLYPGETLSFHVKPFEGANIEEAAIKFTGIDPYH 61

Query: 70  --------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
                    +          +       + A  + HNA FD GF+NA  +R +       
Sbjct: 62  PLRIANTEQEAMDGIFRTVRKAVKASGCKRAILVGHNAHFDHGFVNAAAERCDIKRNPFH 121

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
              +  +++       +  L   C+   I  S+   H A  D+   ++++  +     ++
Sbjct: 122 PFSNFDTVSLAGLAVGQTVLARACEVAEIEFSNEEAHSARYDTEKTAELFCFIANRWREL 181

Query: 182 NFGF 185
               
Sbjct: 182 GGWL 185


>gi|297195480|ref|ZP_06912878.1| DNA polymerase III subunit epsilon [Streptomyces
          pristinaespiralis ATCC 25486]
 gi|297152819|gb|EFH32011.1| DNA polymerase III subunit epsilon [Streptomyces
          pristinaespiralis ATCC 25486]
          Length = 241

 Score = 48.4 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD---YSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           FD ETTG+D + DRI+   AV + D        R  +  + P G    P A+++HG+TD
Sbjct: 11 AFDTETTGVDVEEDRIVS-AAVVVQDSPGGRP--RITRWLVNP-GVPVPPGAIEVHGLTD 66

Query: 68 EFLKDKPSFSSIFS 81
          + L+    + +   
Sbjct: 67 DHLQRNGRWPAPVM 80


>gi|288923046|ref|ZP_06417199.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
 gi|288345596|gb|EFC79972.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
          Length = 296

 Score = 48.4 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 7/171 (4%)

Query: 15  ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP 74
           ETTGL    DR++ +  V           +   L P      P  + +HG+T E L   P
Sbjct: 2   ETTGLWPARDRVLSVAVVLTAPDGAVQGRWSTLLDPG---CDPGPVHIHGLTRERLAGSP 58

Query: 75  SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH 134
           +F+++  E  +         +AHNA FD   +  E  RI +      R+      +R   
Sbjct: 59  TFAAVVDELSELLAG--RVLVAHNAAFDWRMLAGEALRIGRTLPVEWRLCTLTLASRLGL 116

Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             +   L +L + +G+T      H A  D+ +L+ +  +++   ++     
Sbjct: 117 ELASLRLAALAEHWGVTQRRA--HDAEDDAEVLAALLPRILSRAAEQFLEL 165


>gi|119944051|ref|YP_941731.1| exonuclease, RNase T and DNA polymerase III [Psychromonas
          ingrahamii 37]
 gi|119862655|gb|ABM02132.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas
          ingrahamii 37]
          Length = 228

 Score = 48.4 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNG 52
            DIE TGLD K D+++ IG + +++       F     +   G
Sbjct: 45 ALDIEMTGLDPKKDQMVSIGIIPIINAK-IQPEFAQHKLIKIQG 87


>gi|125973027|ref|YP_001036937.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           thermocellum ATCC 27405]
 gi|256004824|ref|ZP_05429799.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           thermocellum DSM 2360]
 gi|281417237|ref|ZP_06248257.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           thermocellum JW20]
 gi|125713252|gb|ABN51744.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           thermocellum ATCC 27405]
 gi|255991274|gb|EEU01381.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           thermocellum DSM 2360]
 gi|281408639|gb|EFB38897.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           thermocellum JW20]
 gi|316940738|gb|ADU74772.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           thermocellum DSM 1313]
          Length = 215

 Score = 48.4 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 81/216 (37%), Gaps = 10/216 (4%)

Query: 7   MRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  IV+D+E   L+SK       + IIEIGA++L +  +    F  F+ P   K     +
Sbjct: 1   MNYIVYDLE---LNSKPFKSSIPNEIIEIGAIKLNENLQEIGMFSSFIKPKYFKKLFSVV 57

Query: 61  -KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +   IT E +    SF ++  +F  +  +        +       +N +  RI  D L 
Sbjct: 58  KQKTKITQEQINSADSFRNVIKQFIRWIGDDYLLISWGHDDVLNLILNCKFNRIKIDWLK 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +  I     A    PS +                 + H AL D+   + ++  +     
Sbjct: 118 RNIDIQKQFSAIYHLPSGQRYSLENALALIGVEIDENLHRALTDAQYTAKIFKSIFDKLD 177

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
              +     +D++ +  KK +     LK+ K +  +
Sbjct: 178 LEVYNTVHIKDKYKRNIKKLIKTKPKLKQSKLVIEK 213


>gi|195651097|gb|ACG45016.1| oligoribonuclease [Zea mays]
          Length = 249

 Score = 48.4 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
           +M  +  D+E TGLD   DRI+EI  + + D   T +
Sbjct: 67  RMPLVWIDLEMTGLDITKDRILEIACI-ITDGKLTKQ 102


>gi|212721064|ref|NP_001131502.1| hypothetical protein LOC100192839 [Zea mays]
 gi|194691708|gb|ACF79938.1| unknown [Zea mays]
          Length = 249

 Score = 48.4 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
           +M  +  D+E TGLD   DRI+EI  + + D   T +
Sbjct: 67  RMPLVWIDLEMTGLDITKDRILEIACI-ITDGKLTKQ 102


>gi|148925831|ref|ZP_01809518.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844817|gb|EDK21921.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 256

 Score = 48.4 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 6/122 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIE+TG       I+EIGAV++ +  +  R FQ F+    ++      +L GIT E +
Sbjct: 74  IVDIESTG-SVSKGEILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYEMV 129

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ PS + + S+F      +++ ++AHN +FD  FI+  L       L   RI       
Sbjct: 130 ENAPSLTKVLSDF--RLFLKDSIFVAHNVRFDYSFISKALNECGFGILLNRRICTIEFAQ 187

Query: 131 RR 132
             
Sbjct: 188 CC 189


>gi|325293446|ref|YP_004279310.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3]
 gi|325061299|gb|ADY64990.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3]
          Length = 202

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 5/150 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      IG   + D     R  +  + P   + SP  + +HGI 
Sbjct: 1   MKTIAIDFET--ANEERGSACSIGLAWIEDGEIV-RVEERLIRPKDMRFSPFNIAVHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P F  +  EF D F+       AHNA FD   + A   +  +   D S +   
Sbjct: 58  PADVEDAPEFPDVMEEFIDDFHGATMI--AHNAAFDFSVMRASFDKYRQSYPDLSYLCSV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156
                     + + LN +     +   H +
Sbjct: 116 KIARHVWPQLASHKLNVIAHHLQLRFVHHN 145


>gi|294626315|ref|ZP_06704917.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294665592|ref|ZP_06730872.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292599316|gb|EFF43451.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292604641|gb|EFF48012.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 213

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 13/185 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D     ++EI  V +            T    L P  G +  P++L++ G
Sbjct: 28  VVVDVETGGFDWNKHALLEIACVPIEMGADGRFFPGETASAHLVPAPGLEIDPKSLEITG 87

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 +        +  Q A  + HNA FD+ F+NA + R+   
Sbjct: 88  IVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 147

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      ++        +  L    +  G+  +    H A+ D+   + ++ K+  
Sbjct: 148 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCKIAN 207

Query: 177 GGSQI 181
                
Sbjct: 208 AWPGP 212


>gi|259156119|gb|ACV96067.1| exonuclease, RNase T and DNA polymerase III [Providencia
           alcalifaciens Ban1]
          Length = 301

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 81/238 (34%), Gaps = 17/238 (7%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSK-TNRTFQVFLCPNGRKNSP 57
           +  M  ++ D ETTGL + ++ IIE+G V++L                ++  P G+    
Sbjct: 49  EQPM--VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDP-GKPIPE 105

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              +L GITD+ ++ +    ++ + +       +   +AHNA+FD  F       +    
Sbjct: 106 LITELTGITDDMVRGQHIDDALVASW----LSDDPLVVAHNAQFDRPFFEKRFAALGHLS 161

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              S           +       L  L   Y    +           HLL +    ++  
Sbjct: 162 WACSASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSE 221

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231
             +     +     F  ++                +K  +  I+++EL +    +  L
Sbjct: 222 ADRRTVLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279


>gi|189423312|ref|YP_001950489.1| exonuclease RNase T and DNA polymerase III [Geobacter lovleyi SZ]
 gi|189419571|gb|ACD93969.1| Exonuclease RNase T and DNA polymerase III [Geobacter lovleyi SZ]
          Length = 302

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 12 FDIETTGLDSKNDRIIEIGAVEL 34
           D ETTGL+   D+IIE+G V  
Sbjct: 47 LDTETTGLNPACDKIIELGIVAF 69


>gi|78047167|ref|YP_363342.1| ribonuclease T [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325925832|ref|ZP_08187202.1| RNAse T [Xanthomonas perforans 91-118]
 gi|123585431|sp|Q3BV71|RNT_XANC5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|78035597|emb|CAJ23268.1| ribonuclease T [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325543767|gb|EGD15180.1| RNAse T [Xanthomonas perforans 91-118]
          Length = 213

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 13/185 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D     ++EI  V +            T    L P  G +  P++L++ G
Sbjct: 28  VVVDVETGGFDWNKHALLEIACVPIEMDTDGRFFPGETASAHLVPAPGLEIDPKSLEITG 87

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 +        +  Q A  + HNA FD+ F+NA + R+   
Sbjct: 88  IVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 147

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      ++        +  L    +  G+  +    H A+ D+   + ++ K+  
Sbjct: 148 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCKIAN 207

Query: 177 GGSQI 181
                
Sbjct: 208 AWPGP 212


>gi|21242321|ref|NP_641903.1| ribonuclease T [Xanthomonas axonopodis pv. citri str. 306]
 gi|24638164|sp|Q8PM62|RNT_XANAC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|21107753|gb|AAM36439.1| ribonuclease T [Xanthomonas axonopodis pv. citri str. 306]
          Length = 213

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 13/185 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D     ++EI  V +            T    L P  G +  P++L++ G
Sbjct: 28  VVVDVETGGFDWNKHALLEIACVPIEMGADGRFFPGETASAHLVPAPGLEIDPKSLEITG 87

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 +        +  Q A  + HNA FD+ F+NA + R+   
Sbjct: 88  IVLDHPFRFAKQEKEALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 147

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      ++        +  L    +  G+  +    H A+ D+   + ++ K+  
Sbjct: 148 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCKIAN 207

Query: 177 GGSQI 181
                
Sbjct: 208 AWPGP 212


>gi|86147892|ref|ZP_01066197.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
 gi|218710857|ref|YP_002418478.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32]
 gi|85834319|gb|EAQ52472.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
 gi|218323876|emb|CAV20237.1| putative DNA polymerase III, epsilon subunit [Vibrio splendidus
          LGP32]
          Length = 210

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66
           +  D ETT LD     ++ I A +++ +   T++ F+V L  P     +   +      
Sbjct: 30 YVSLDCETTSLDPNQAELVTIAATKIIGNRIITSQPFEVRLRAPQSLDCNSIKIHRIRHQ 89


>gi|300717064|ref|YP_003741867.1| exodeoxyribonuclease X [Erwinia billingiae Eb661]
 gi|299062900|emb|CAX60020.1| Exodeoxyribonuclease X [Erwinia billingiae Eb661]
          Length = 221

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 18/183 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+E+ +V+++D           +CP+ R  SP A+ +H IT+  +
Sbjct: 4   VIDTETCGL---QGGIVEVASVDVIDGKIV-NPMSDLICPD-RPISPHAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP        +       +  ++AHNA FD   +                +   +  +
Sbjct: 59  ADKPPIEHAIGRYH-----GSPYYVAHNASFDRRMLPEMHGEWICTMTLARGLWPGIKYS 113

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGA--------LLDSHLLSDVYIKMMVGGSQIN 182
            +    +     +         +    +                 +++  +M+V GS   
Sbjct: 114 NQALRETLKLEVTPPADLHAHRALYDCYVTAALLIRIMDYSGWDAAEMIRRMLVKGSSTT 173

Query: 183 FGF 185
           F F
Sbjct: 174 FPF 176


>gi|289804727|ref|ZP_06535356.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 63

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---A 235
            Q +  F    +   ++ + T+  I + +  +      ++EEL  H+  +  + K     
Sbjct: 1   GQTSMTFAMEGETQRQQGEATIQRI-VRQASRLRVVFASEEELAAHESRLDLVQKKGGSC 59

Query: 236 IWD 238
           +W 
Sbjct: 60  LWR 62


>gi|330998364|ref|ZP_08322188.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
 gi|329568470|gb|EGG50275.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
          Length = 164

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 52/167 (31%), Gaps = 6/167 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   I  +G V + +   T R +   + P     +    ++HG++ +
Sbjct: 4   FAAIDFET--ANGQRSSICSVGLVVVRNREITIRHY-RLVRPYPNYYNYWNTQVHGLSFQ 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                  F  ++ E            +AHN  FD G + A  Q    +           +
Sbjct: 61  DTAHAAPFPEVWREIIPLIEG--LPLVAHNRPFDEGCLKAAFQAYGMEYPGYPFHCTLRA 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                     N                  H AL D+   + + +K++
Sbjct: 119 SRLAFGRDLPNHQLQTVALR-CGYDLTQHHHALADAEACARIALKIL 164


>gi|33240227|ref|NP_875169.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
          marinus subsp. marinus str. CCMP1375]
 gi|33237754|gb|AAP99821.1| DNA polymerase III epsilon subunit [Prochlorococcus marinus
          subsp. marinus str. CCMP1375]
          Length = 236

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVEL 34
          + D ETTGLD + D+ IE+GA+  
Sbjct: 16 IVDTETTGLDPEKDQCIEVGAILF 39


>gi|84393062|ref|ZP_00991828.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
 gi|84376314|gb|EAP93196.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
          Length = 210

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66
           +  D ETT LD     ++ I A +++ +   T++ F+V L  P     +   +      
Sbjct: 30 YVSLDCETTSLDPNQAELVTIAATKIIGNRIITSQPFEVRLRAPQSLDCNSIKIHRIRHQ 89


>gi|294811599|ref|ZP_06770242.1| Putative DNA polymerase III epsilon subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324198|gb|EFG05841.1| Putative DNA polymerase III epsilon subunit [Streptomyces
           clavuligerus ATCC 27064]
          Length = 287

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            FD ETTG+D +NDRI+    V  ++       R  +  + P G    P A ++HG+TD+
Sbjct: 57  AFDTETTGVDVENDRIVAAAVVVQDMAGGRP--RITRWLINP-GIPVPPGATEVHGLTDD 113

Query: 69  FLKDKPSFSSI 79
            ++    + + 
Sbjct: 114 HVQRNGRWPAP 124


>gi|262275580|ref|ZP_06053389.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
 gi|262219388|gb|EEY70704.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
          Length = 239

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 51/164 (31%), Gaps = 1/164 (0%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ET+GLD + D+++ +G VE+     + +    + +          A   H   +  
Sbjct: 55  VLDFETSGLDPEQDKVLSMGWVEIRQSQIRLSSARHILVNQPVLNGYESARIHHLRPETL 114

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                S    FS+ +D    +         +         L     +          +  
Sbjct: 115 RNCGVSEHHAFSQLFDVMKGKVIVAHGSVIEKRFLARYLTLHYGQINLPLVWLDTLKIEQ 174

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R +      D      R    +     H AL D+   +++Y+ 
Sbjct: 175 YREQLRQVCRDWRLSSVRAAHGLPDYQAHNALNDAIATAELYLA 218


>gi|254391300|ref|ZP_05006504.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus
          ATCC 27064]
 gi|326440213|ref|ZP_08214947.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus
          ATCC 27064]
 gi|197704991|gb|EDY50803.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus
          ATCC 27064]
          Length = 241

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 11 VFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           FD ETTG+D +NDRI+    V  ++       R  +  + P G    P A ++HG+TD+
Sbjct: 11 AFDTETTGVDVENDRIVAAAVVVQDMAGGRP--RITRWLINP-GIPVPPGATEVHGLTDD 67

Query: 69 FLKDKPSFSSI 79
           ++    + + 
Sbjct: 68 HVQRNGRWPAP 78


>gi|323493392|ref|ZP_08098514.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG
          20546]
 gi|323312215|gb|EGA65357.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG
          20546]
          Length = 239

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50
           +  D ETTGL S +D II IG V    +    N+     + P
Sbjct: 49 FLAMDFETTGLSSDDDDIITIGTVPFNLNRIYINQAQHWTVKP 91


>gi|149912028|ref|ZP_01900621.1| ribonuclease T [Moritella sp. PE36]
 gi|149804889|gb|EDM64924.1| ribonuclease T [Moritella sp. PE36]
          Length = 231

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 64/186 (34%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIET G +++ D ++EI A  +E+ +    K + T    + P  G      AL   G
Sbjct: 19  VVIDIETAGFNAQTDAMLEIAASILEMDEDGYLKISHTLHFNVEPFEGANLEQAALDFTG 78

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +          +         A  +AHNA FD  F++A   R    
Sbjct: 79  IDPTNPLRGAVPEREAITEIYKAVRKGLKDTGCHRAIMVAHNAAFDHAFLSAASNREKIK 138

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C   GI   H+  H A  D+   ++++  ++ 
Sbjct: 139 RNPFHPFATFDTTTLAGLAVGQTVLAKACVAAGIPFDHKQAHSAKYDTEQTAELFCYIVN 198

Query: 177 GGSQIN 182
               + 
Sbjct: 199 KWKDMG 204


>gi|114562725|ref|YP_750238.1| exonuclease, RNase T and DNA polymerase III [Shewanella
          frigidimarina NCIMB 400]
 gi|114334018|gb|ABI71400.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
          frigidimarina NCIMB 400]
          Length = 229

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK 39
            D+E TGLD  +D++I IG V +++   
Sbjct: 45 AIDLEMTGLDPIHDQVISIGLVPIINGVI 73


>gi|90409780|ref|ZP_01217797.1| hypothetical protein P3TCK_03416 [Photobacterium profundum 3TCK]
 gi|90329133|gb|EAS45390.1| hypothetical protein P3TCK_03416 [Photobacterium profundum 3TCK]
          Length = 186

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 5/156 (3%)

Query: 8   RKIVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R + FD+E      G D K   IIEIG  EL  D  +  R  Q ++ P   + S    +L
Sbjct: 5   RIVCFDLEMCCWNDGRDPKTGEIIEIGLAELDLDTGEIVRRTQHYVKPEHDEISEFCTEL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI  + +       +      +       +  A     D         +  K P     
Sbjct: 65  TGIKPQVIHKNGKPLAEILRSMESKFGGKHKIYAAWGHDDRILHAECAAKGLKVPFTEYI 124

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            +  +   +R     R    +  +  G+    R   
Sbjct: 125 NLAMIFRLQRHVKKKRCGQRAAMEIAGLEWEGRQHS 160


>gi|225420339|ref|ZP_03762642.1| hypothetical protein CLOSTASPAR_06683 [Clostridium asparagiforme
           DSM 15981]
 gi|225041025|gb|EEG51271.1| hypothetical protein CLOSTASPAR_06683 [Clostridium asparagiforme
           DSM 15981]
          Length = 323

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 55/212 (25%), Gaps = 11/212 (5%)

Query: 7   MRKIVFDIE-TTGLDSKND-------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  IV D+E     + K D        IIEIGAV+L +  +    F   + P   +    
Sbjct: 1   MDYIVLDLEWNQSPNGKEDSVEHLPFEIIEIGAVKLDEGFRQKGEFHRLIRPQVYRQLHF 60

Query: 59  ALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINK 115
            +      D         +F  +  EF D+   +       +             +  N 
Sbjct: 61  KISEVTHMDMGELKHRGKNFKQVMREFLDWCGTEYCFCTWGSMDLTELQRNMDYFKVPNP 120

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P                             +       R  H AL D+     V   M 
Sbjct: 121 FPRPLLYYDVQKLYCMEYGDGKNKPSLDQAVQERGIRQERPFHRALSDAFYTGRVLAVMD 180

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207
               +             KEE+ ++      K
Sbjct: 181 FEQVRPYISVDYFRLPRNKEEEVSLRFPDYAK 212


>gi|300904709|ref|ZP_07122542.1| exonuclease [Escherichia coli MS 84-1]
 gi|301304416|ref|ZP_07210528.1| exonuclease [Escherichia coli MS 124-1]
 gi|300403376|gb|EFJ86914.1| exonuclease [Escherichia coli MS 84-1]
 gi|300840267|gb|EFK68027.1| exonuclease [Escherichia coli MS 124-1]
 gi|315257344|gb|EFU37312.1| exonuclease [Escherichia coli MS 85-1]
          Length = 220

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSQLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|239928182|ref|ZP_04685135.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291436512|ref|ZP_06575902.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291339407|gb|EFE66363.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
          Length = 238

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 3/106 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL---HGITD 67
            FD+ETTG D + DRI+    V L      +      L P        A           
Sbjct: 11  AFDLETTGTDIETDRIVTAAVVRLEPDGAVSAERTWLLDPGVVIPEQAAAIHGIPTEHAR 70

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
                 P      +             +  NA++D+  ++ E +R 
Sbjct: 71  AHGVPAPRAIEEITRAVAEVLRAGTPLVVMNARYDLSLLDRECRRY 116


>gi|302550179|ref|ZP_07302521.1| DNA polymerase III subunit epsilon [Streptomyces
          viridochromogenes DSM 40736]
 gi|302467797|gb|EFL30890.1| DNA polymerase III subunit epsilon [Streptomyces
          viridochromogenes DSM 40736]
          Length = 242

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 28/83 (33%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG+D + DRI+    V         R  +  + P     +          +   
Sbjct: 12 AFDTETTGVDVETDRIVSAAVVVQDAPGVRPRVSRWLVNPGVPVPAEATAVHGLTEEHLQ 71

Query: 71 KDKPSFSSIFSEFWDFFNEQNAE 93
          ++    + +  E  +   EQ   
Sbjct: 72 RNGRWPAPVVYEIAETLAEQAHA 94


>gi|184200503|ref|YP_001854710.1| DNA polymerase III subunit epsilon [Kocuria rhizophila DC2201]
 gi|183580733|dbj|BAG29204.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila
           DC2201]
          Length = 232

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 65/202 (32%), Gaps = 3/202 (1%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG D +  RI+    V +       + ++    P        A      TD    
Sbjct: 15  FDLETTGRDPQQARIVTASVVLVSPAGDVLQEWEWLADPGVEIPEEAAAVHGVSTDRARA 74

Query: 72  DKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +    + + +E  +            +A NA +D+  +  E +R      +P  ++D   
Sbjct: 75  EGRPVAEVAAELSEVLAGFWREGVPVLAFNAAYDLTVLTRETERHGLPAPEPFPVLDPFV 134

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           + ++ H   R             +   + H +  D+     +   +    +++       
Sbjct: 135 LNKQVHRYRRGKRTLGALCEEYGVVLDAAHTSAEDALATERLAAALADRFAELRQPAAAL 194

Query: 189 EDRFFKEEKKTVPNISLLKRDK 210
            +       +   ++    R K
Sbjct: 195 HEAQIGWAAEQAASLQEYFRRK 216


>gi|167621824|ref|YP_001676609.1| exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
 gi|167351565|gb|ABZ74295.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
          Length = 299

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 58/236 (24%), Gaps = 22/236 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-----TNRTFQVFLCPNGRKNSPEALKLHG 64
           I  D+ETTG +   D IIE+  V                F        R+ S        
Sbjct: 47  IYLDVETTGKNPVRDEIIELAMVPFQYDEAGRLCGVGAPFVAL-----REPSAPISAEIT 101

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                     +  SI       F    A  +AHNA FD  F     +         S   
Sbjct: 102 RITGITNAMVAGQSIDPAMVAAFIAPAAVIVAHNASFDRRFTERFCEAFQAKGWACSMSQ 161

Query: 125 DTLSIARRKHPS------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              +    +                  +     ++        L S        +M+   
Sbjct: 162 VDWAGEGFEGTKLSYLASQCGFFFDGHRAENDCLAGLEILARPLASGRT--ALAQMLEAA 219

Query: 179 SQINFGFKTNEDRFFKEEKKTVP----NISLLKRDKPLFTRITKEELDEHDKTIQT 230
              ++        +  +++        N       K  +  + + + +   + +  
Sbjct: 220 RAPSWRIWAERAPYDFKDRLKDRGYRWNGEDGPTPKAWYIDVPEAQREAELEFLHK 275


>gi|296110637|ref|YP_003621018.1| exonuclease [Leuconostoc kimchii IMSNU 11154]
 gi|295832168|gb|ADG40049.1| exonuclease [Leuconostoc kimchii IMSNU 11154]
          Length = 177

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 5/165 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + +    + I    +      ++ F   + P     S     +HG+ 
Sbjct: 1   MNFIAMDFET--ANHEKHSAVSIAIAVVRHNQVVDK-FYSLIKPET-YFSARNTAVHGLK 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +   P F     +      +++   +AHNA FD   +   L     +      +   
Sbjct: 57  ESDVAQAPKF-PEVWKIIAPLFKEDKLVVAHNAAFDNSILKGTLAYYGIEEPHYMLLDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +  +       + LN++ + +GIT+ H         +     +Y
Sbjct: 116 RTSRKLLPDFKNHKLNTVAENFGITLDHHHNALDDAVAAANILIY 160


>gi|228471624|ref|ZP_04056398.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC
           33624]
 gi|228277043|gb|EEK15729.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC
           33624]
          Length = 1484

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 80/252 (31%), Gaps = 30/252 (11%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL    +          R ++I      +           + P+G     +
Sbjct: 2   YLIFDTETTGLPRNYNAPISDSENWPRAVQIAWQLHDEKGALLEHKDFLIIPDGYTIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----- 113
           A ++HGI+ E   ++        E ++    +    +  N  FD+  + AE  R      
Sbjct: 62  AERIHGISTELATEQGVSIHKVFEEFEKALSKTQYIVGQNIGFDIHIMGAEFYRYGVSTV 121

Query: 114 ----NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                          +   I   +    +    +    +         H A  D    + 
Sbjct: 122 LDKLPILDTCSELTAELCKIPGGRAGKFKYPNLTELHEFLFGTPFAEAHNATADVEATAR 181

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP-------NISLLKRDKPLFTR----ITK 218
            + +++      +    + E     +E    P       +I+L    + L ++    ++ 
Sbjct: 182 CFFELLRRNEGFSSSAISPEAILLIQENHPSPISLWGLKHINLKSASEKLKSKEQRGLSD 241

Query: 219 EELDEHDKTIQT 230
            E+ E+   +Q+
Sbjct: 242 SEISENLALLQS 253


>gi|331002829|ref|ZP_08326343.1| hypothetical protein HMPREF0491_01205 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330413318|gb|EGG92686.1| hypothetical protein HMPREF0491_01205 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 220

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 7  MRKIVFDIETTGLDSKNDRI-------IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
          M+ IV D+E  G++ K  RI       IEIGA+ L +  +   +F+ ++ P       + 
Sbjct: 1  MKHIVVDLEMNGIE-KKHRIFGCTMETIEIGAIMLDENYQEISSFKTYVKPEYNSKIEKN 59

Query: 60 LKL-HGITDEFLKDKPSFSSIFSEFWDFF 87
          +    GIT+  + + P F+    +F D+ 
Sbjct: 60 ISRLTGITNNMVVNAPKFNEALKKFSDWC 88


>gi|323144276|ref|ZP_08078898.1| exonuclease [Succinatimonas hippei YIT 12066]
 gi|322415946|gb|EFY06658.1| exonuclease [Succinatimonas hippei YIT 12066]
          Length = 232

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLH 63
             D ETTGLD   D I+ +G V++        + F  F+    +  S  A+  H
Sbjct: 49  ALDFETTGLDFNEDLILSMGWVDINRGEIDFSSGFHTFINIADKVKSHSAVINH 102


>gi|258623764|ref|ZP_05718722.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM603]
 gi|258583961|gb|EEW08752.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM603]
          Length = 209

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 7/171 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD K   ++ I A ++  +   T++ F+V LC   +     ++++H I  
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLC-APQSLDSGSVRIHKIRH 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L+D  S      +  DF    N   + ++ ++D   ++   ++    PL    I  + 
Sbjct: 89  QDLQDGLSEKEALIQLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQ 146

Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                  +  P++  DL+       + +  + KH AL D+   + V++++ 
Sbjct: 147 IYHDKLEKHLPNAYFDLSLDAICRHLDLPLQDKHDALQDAIAAALVFVRLT 197


>gi|297203185|ref|ZP_06920582.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
          29083]
 gi|197717364|gb|EDY61398.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
          29083]
          Length = 240

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53
          FD+ETTG D +  RI+    +EL D     R  +    P   
Sbjct: 11 FDLETTGTDPREARIVTAAVIELRDGQSLGRR-EWLADPGME 51


>gi|58582091|ref|YP_201107.1| ribonuclease T [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623997|ref|YP_451369.1| ribonuclease T [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576299|ref|YP_001913228.1| ribonuclease T [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426685|gb|AAW75722.1| ribonuclease T [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367937|dbj|BAE69095.1| ribonuclease T [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520751|gb|ACD58696.1| ribonuclease T [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 211

 Score = 48.4 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 65/185 (35%), Gaps = 13/185 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G DS    ++EI  V +            T    L P  G +  P++L++ G
Sbjct: 26  VVVDVETGGFDSNKHALLEIACVPIEMDADGRFFPGDTASAHLVPAPGLEIDPKSLEITG 85

Query: 65  ITDEFLKD--------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 +        +  Q A  + HNA FD+ F+NA + R+   
Sbjct: 86  IVLDHPFRLAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 145

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      ++        +  L    +  G+  +    H A+ D+   + ++ K+  
Sbjct: 146 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCKIAN 205

Query: 177 GGSQI 181
                
Sbjct: 206 AWPGP 210


>gi|258620661|ref|ZP_05715698.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM573]
 gi|262172598|ref|ZP_06040276.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
 gi|258587176|gb|EEW11888.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM573]
 gi|261893674|gb|EEY39660.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
          Length = 209

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 7/171 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD K   ++ I A ++  +   T++ F+V LC   +     ++++H I  
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLC-APQSLDSGSVRIHKIRH 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L+D  S      +  DF    N   + ++ ++D   ++   ++    PL    I  + 
Sbjct: 89  QDLQDGLSEKEALIQLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQ 146

Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                  +  P++  DL+       + +  + KH AL D+   + V++++ 
Sbjct: 147 IYHDKLEKHLPNAYFDLSLDAICRHLDLPLQDKHDALQDAIAAALVFVRLT 197


>gi|288941633|ref|YP_003443873.1| ribonuclease T [Allochromatium vinosum DSM 180]
 gi|288897005|gb|ADC62841.1| ribonuclease T [Allochromatium vinosum DSM 180]
          Length = 226

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 13/188 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDY----SKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D++   ++E+ AV +        +   T    + P  G +  P AL  +G
Sbjct: 21  VVVDVETAGFDAQRHALLEVAAVIIRQRSDGLLEPAPTLACHVLPFVGSELDPRALAFNG 80

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                    +   +         A  + HNA FD+GFI A ++R    
Sbjct: 81  IDPHHPFRDAISEHDALERILTPIRKAVKSTGCNRAILVGHNAHFDLGFIKAAVERTGYK 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      ++        +  L    +  G+   H   H A  D+   + ++  ++ 
Sbjct: 141 RNPFHAFSVFDTVTLGGLMFGQTVLAKASRAAGLHWKHSEAHSAAYDAEQTARLFCAVVN 200

Query: 177 GGSQINFG 184
              +++  
Sbjct: 201 RWRELDPE 208


>gi|254457641|ref|ZP_05071069.1| exonuclease [Campylobacterales bacterium GD 1]
 gi|207086433|gb|EDZ63717.1| exonuclease [Campylobacterales bacterium GD 1]
          Length = 231

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 7/176 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D+ETTGL+ + DR+  IG V   D    NRT    +   G+K    A  ++ IT+E 
Sbjct: 3   IFLDVETTGLE-EIDRVCSIGIVWSEDGE--NRTIYELVN-EGKKIPSLASSINHITNEM 58

Query: 70  LKDKPSFSSIF-SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK KP F      +     N ++   + HN KFD+  +         + +D  R+   L 
Sbjct: 59  LKGKPKFQESEAYKLLTQHNNEDTTIVGHNIKFDLAMLKKSGFNFIGEIIDTLRVTKHLV 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
               +   S   L    K Y         H AL D+ +  ++Y  ++    +    
Sbjct: 119 SECEQ--FSLQFLRYELKLYKEEKELLQAHHALSDATIAKNLYEYLLEIQPKEKLA 172


>gi|297198375|ref|ZP_06915772.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
          29083]
 gi|197714433|gb|EDY58467.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
          29083]
          Length = 241

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDEF 69
           FD ETTG+D + DRI+   AV + D + T  R  +  + P G      A  +HG+T+E 
Sbjct: 11 AFDTETTGVDVETDRIVS-AAVVVQDAAGTRPRVSRWLVNP-GVPVPAGATAVHGLTEEH 68

Query: 70 LKDKPSFSSIFSEFWD 85
          L+    + +       
Sbjct: 69 LQRNGRWPAPVMFEIA 84


>gi|302533422|ref|ZP_07285764.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
 gi|302442317|gb|EFL14133.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
          Length = 241

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 11 VFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           FD ETTG+D + DRI+    V  E        R+ +  + P G    P A ++HG+TDE
Sbjct: 11 AFDTETTGVDVEQDRIVSAALVVQECAGGRV--RSTRWLVNP-GVPVPPGATEVHGLTDE 67

Query: 69 FLKDKPSFSSI 79
           L+    + + 
Sbjct: 68 HLQRNGRWPAP 78


>gi|167647058|ref|YP_001684721.1| exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
 gi|167349488|gb|ABZ72223.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
          Length = 201

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 46/158 (29%), Gaps = 5/158 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + +      IG   + +   T      ++ P   + S   + +HGI 
Sbjct: 1   MPVVAIDFET--ANEQRSSPCAIGLAWIENGRIT-EVEHHYIRPIDMRFSGWNIAVHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D  +F  +                AHNA FD+  +    +           I   
Sbjct: 58  PADVEDADAFPDVLGRLQARIERATVI--AHNAAFDISVMRRTCELYGLPFPCFDYICTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
                         LN++C   G+   H          
Sbjct: 116 QVAKNTWPGLPSAKLNAVCDFLGVEFKHHDAAQDAFAC 153


>gi|124268095|ref|YP_001022099.1| oligoribonuclease [Methylibium petroleiphilum PM1]
 gi|124260870|gb|ABM95864.1| putative oligoribonuclease protein [Methylibium petroleiphilum
          PM1]
          Length = 191

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD  NDRIIEI  V
Sbjct: 21 IDLEMTGLDPLNDRIIEIAVV 41


>gi|21230975|ref|NP_636892.1| ribonuclease T [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66769021|ref|YP_243783.1| ribonuclease T [Xanthomonas campestris pv. campestris str. 8004]
 gi|188992135|ref|YP_001904145.1| ribonuclease T [Xanthomonas campestris pv. campestris str. B100]
 gi|24638163|sp|Q8PAG3|RNT_XANCP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|81305015|sp|Q4UT60|RNT_XANC8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|21112595|gb|AAM40816.1| ribonuclease T [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574353|gb|AAY49763.1| ribonuclease T [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733895|emb|CAP52101.1| Ribonuclease T [Xanthomonas campestris pv. campestris]
          Length = 216

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 65/185 (35%), Gaps = 13/185 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D     ++EI  V +      +     T    L P  G +  P++L++ G
Sbjct: 28  VVVDVETGGFDWNKHALLEIACVPIEMDAQGHFFPGETASAHLVPAPGLEIDPKSLEITG 87

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 +        +  Q A  + HNA FD+ F+NA + R+   
Sbjct: 88  IVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 147

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      ++        +  L    +  G+  +    H A+ D+   + ++ K+  
Sbjct: 148 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNSADAHSAVYDTEQTARLFCKIAN 207

Query: 177 GGSQI 181
                
Sbjct: 208 AWPGP 212


>gi|257468536|ref|ZP_05632630.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium ulcerans
           ATCC 49185]
 gi|317062795|ref|ZP_07927280.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
 gi|313688471|gb|EFS25306.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
          Length = 190

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 23/192 (11%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-----------NGRK 54
           M+ +  D ET GL+ K   +I++ G V +    K    F  F+ P             + 
Sbjct: 1   MKILFIDTETGGLNPKESALIQLSGIVRID--KKDVEEFNFFIKPFAESEVNAKALEVQG 58

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            + + L+      E          +      +          +N KFD+  + +  +R  
Sbjct: 59  RTEKELETEKYRPEKEVYTDFKKILDRYIDKYDKTDKFIVAGYNVKFDIDMLQSFFKRNG 118

Query: 115 KDPLDPS---------RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            + L              I  L +         N L + C+ +GI          +  + 
Sbjct: 119 DNFLFSYISSSVLDPLPCIGMLQLCEVLPELKNNKLETWCEYFGIGFKAHDSLEDIKATK 178

Query: 166 LLSDVYIKMMVG 177
            L     K++  
Sbjct: 179 ELIFKIAKLIRK 190


>gi|322378997|ref|ZP_08053400.1| DNA polymerase III subunit epsilon (DnaQ) [Helicobacter suis HS1]
 gi|321148489|gb|EFX42986.1| DNA polymerase III subunit epsilon (DnaQ) [Helicobacter suis HS1]
          Length = 219

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 13/178 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPEALKL 62
               DIETTG   +N  +IEI A+            +  R+F   +  +  +  P+  +L
Sbjct: 36  YCFVDIETTGSKPENSSMIEIAALLYEPPKNPMHKGQIIRSFSSLI--HCLEVPPKITEL 93

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G++ + LK+ P   ++  +F  F  +    ++AHNA FD  FI+A   ++    L  + 
Sbjct: 94  TGLSTDDLKEAPPLEAVLQDFKLFIQD--HIFVAHNADFDFHFISACCVQVLDSAL-SNA 150

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            + TL++AR+  PS R+ L  L    G+ I     H A  D+     V+   +    Q
Sbjct: 151 KLCTLNLARKCIPSPRHGLQFLNTFLGLDIPIS--HRAYADALASLRVFEHCLRVLPQ 206


>gi|260436194|ref|ZP_05790164.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8109]
 gi|260414068|gb|EEX07364.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8109]
          Length = 297

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHGITDE 68
           + D ET+GLD   D+ +E+G +       +      Q FL P        A +       
Sbjct: 70  IIDTETSGLDPLQDQCLELGCILFD--VPSRSVLAQQSFLLP----VDSNAAEAINRIPA 123

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P        +++   +     +AHNA FD  +       +          ++ + 
Sbjct: 124 AVTRRPQPWREALVWFEHLLDAADLLVAHNAAFDRQWFGLG--VVPATATPWLCTMEDIR 181

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQINFGFK 186
               +   SR  +  L   YG+ +     H AL D   +++V+ +   +    +     +
Sbjct: 182 WPAERQLRSRPSVRDLALAYGVPVWAA--HRALSDCIYIAEVFARCDDLEQLLERGLEPR 239

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLF----TRITKEELDE 223
                    E++ +   +  + + P+      R++  E+ E
Sbjct: 240 QLMRARVSFEERHLAKAAGFRWNDPIKGAWTRRLSDREVAE 280


>gi|237731882|ref|ZP_04562363.1| exodeoxyribonuclease X [Citrobacter sp. 30_2]
 gi|226907421|gb|EEH93339.1| exodeoxyribonuclease X [Citrobacter sp. 30_2]
          Length = 226

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 18/177 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +++ M +I+ D ET GL      I+EI +V+++D           + P+ R  SP+A+
Sbjct: 1   MGQEHGMLRII-DTETCGL---QGGIVEIASVDVVDGKIV-NPMSHLVRPD-RPISPQAM 54

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +H IT+  + DKP    +  +++      +  ++AHNA FD   +              
Sbjct: 55  AIHRITEAMVADKPWIEDVIPQYY-----GSEWYVAHNASFDRRVLPDMPGEWICT---- 105

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              +            S   L    K    T +    H AL D ++ + + I +M  
Sbjct: 106 ---MKLSRRLWPGIKYSNMALYKSRKLSVQTPAGLHHHRALYDCYITAALLIDIMQT 159


>gi|327332353|gb|EGE74089.1| putative DNA polymerase III epsilon subunit [Propionibacterium
           acnes HL097PA1]
          Length = 210

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 13/175 (7%)

Query: 9   KIVFDIET----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  D ET     G+ +      ++  V++LD    +R     + P    +  E   LHG
Sbjct: 43  FVAVDFETANRMGGVSA-----CQVAMVKVLDGQIVDR-LNTLIRPPKGWDFFEFTYLHG 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+   + + P +++I +    F +   A   AHNA FD        +      L      
Sbjct: 97  ISATDVAEAPGWTNIANAVSHFVDG--ATVYAHNAAFDSRVWRQLDEHFGTTTLPAPFFC 154

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +   A+R  P   N                + H A  D+   + +  ++     
Sbjct: 155 -SYRTAQRLIPGLPNYKLPTVLHACAPNYQLNHHRADSDAEACALIVCELQRRAQ 208


>gi|312867475|ref|ZP_07727684.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           parasanguinis F0405]
 gi|311097176|gb|EFQ55411.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           parasanguinis F0405]
          Length = 817

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 10/106 (9%)

Query: 1   MIRKNKMRKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R+ + +  + D+E T  G ++K   II++G V + D   T ++++  + P+ R     
Sbjct: 1   MTRQKR-KYAIVDLEATSAGSNAK---IIQVGIVIVEDGVIT-QSYETDVNPHER-LDEH 54

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
             +L G+TD  L+  P F+ +  E ++   +  A ++AHN KFD  
Sbjct: 55  IKQLTGLTDARLRKAPEFAQVAKEIFELIED--AVFVAHNVKFDAN 98


>gi|110636436|ref|YP_676643.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC
           33406]
 gi|110279117|gb|ABG57303.1| DNA polymerase III, epsilon subunit [Cytophaga hutchinsonii ATCC
           33406]
          Length = 183

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 5/150 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET   ++    I  +G   + D     +T    + P     S   +++HGIT
Sbjct: 1   MNFTALDFET--ANTHKTSICAVGMAIVEDGKVV-KTISKLIKPVPDFYSYWNVQIHGIT 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +   D P F  ++ E   +     +  +AHNA FDVG + + L                
Sbjct: 58  PDMTADAPYFIDVWQELKQYI--DYSTLVAHNAAFDVGALRSILTTHEVSFPKTDYFCSC 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156
               +       + L+++C+   + ++H  
Sbjct: 116 SVSRKVFKEIENHKLSTVCRHIDVPLNHHE 145


>gi|308446414|ref|XP_003087176.1| hypothetical protein CRE_18392 [Caenorhabditis remanei]
 gi|308260385|gb|EFP04338.1| hypothetical protein CRE_18392 [Caenorhabditis remanei]
          Length = 137

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 5/114 (4%)

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             + DTL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M     Q
Sbjct: 20  CEVTDTLAMAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILSDVYLAMTG--GQ 77

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
           ++F          + ++ T      +          + EEL+ H+  ++   + 
Sbjct: 78  VSFDMDALSAHTDQAQRNTTRKKIEINAP---IILPSDEELEAHENWVKQFQEK 128


>gi|153209510|ref|ZP_01947415.1| exonuclease [Coxiella burnetii 'MSU Goat Q177']
 gi|212218768|ref|YP_002305555.1| exodeoxyribonuclease I [Coxiella burnetii CbuK_Q154]
 gi|120575335|gb|EAX31959.1| exonuclease [Coxiella burnetii 'MSU Goat Q177']
 gi|212013030|gb|ACJ20410.1| exodeoxyribonuclease I [Coxiella burnetii CbuK_Q154]
          Length = 458

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 3/128 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEA 59
           +  ++   + +D+ETTGL+   D+II+  A+   +        ++ +   P+   +    
Sbjct: 1   MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILIRLNPDVIPSPEAM 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +  H  + + +    +      E     N      + +N               N  P  
Sbjct: 61  II-HRFSIDQMLSGKAEIEAIREIHQSVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPPY 119

Query: 120 PSRIIDTL 127
             +  +  
Sbjct: 120 THQYDNFC 127


>gi|18466779|ref|NP_569586.1| hypothetical protein HCM2.0114c [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16506095|emb|CAD09981.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
          Length = 185

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 66/188 (35%), Gaps = 9/188 (4%)

Query: 7   MRKIV--FDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVF---LCPNGRKNSPEAL 60
           M  IV   DIE+TGLD +   +IIEI         +T +          P  R   P+A 
Sbjct: 1   MTTIVGGVDIESTGLDFTSGHKIIEIAITRYE--LETQKHIDSLEMRFNP-RRSIDPKAQ 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI+ E L  +P  +    +   +    +A    +   FD+ FI  E         D 
Sbjct: 58  AVHGISLEDLATEPLLADHAGKIAAYMGACSALVAHNGEAFDLPFIRHEFGSYGVKLPDI 117

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +   L          R  L  L    G T      H AL D+ L+   + K       
Sbjct: 118 PLVDSMLDGLWATEDGKRPRLEELAFSLGFTYDREKAHSALYDTDLMMQCFFKAREKYGF 177

Query: 181 INFGFKTN 188
               F++ 
Sbjct: 178 FKLPFESA 185


>gi|167554101|ref|ZP_02347842.1| YacC [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205321613|gb|EDZ09452.1| YacC [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
          Length = 287

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 60/188 (31%), Gaps = 13/188 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGLD+   + +EIG V         R F+  L P      P A  +HGI+DE 
Sbjct: 106 VFLDTETTGLDA-GAQALEIGLVNARG----ERIFETRLKPTVA-IDPAAAAVHGISDED 159

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   PS+  I  +            +  NA+FD   +       N        +    ++
Sbjct: 160 LVRAPSWPDIAQQLQHHI--GRRPLVIFNAEFDTRILKQTAAAHNDPASWLDSLTVYCAM 217

Query: 130 ARRKHPSSRNDLNSLCKRYGIT-----ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                     +        G             H A+ D+ + + V   +     ++   
Sbjct: 218 WLAAGYYGPTNRYGTISLSGAVSQAGLSWIGEAHSAVTDAVMTAQVVNNIAGYWHELQCE 277

Query: 185 FKTNEDRF 192
              +    
Sbjct: 278 MNDDAGSE 285


>gi|262394233|ref|YP_003286087.1| DNA polymerase III subunit alpha [Vibrio sp. Ex25]
 gi|262337827|gb|ACY51622.1| DNA polymerase III alpha subunit (gram-positive type) [Vibrio sp.
           Ex25]
          Length = 205

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 55/189 (29%), Gaps = 21/189 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +      I+ D ETTGL +    I+E  A+               + P       +A 
Sbjct: 1   MKKLPTENAIIIDTETTGLGAD-AEIVEFTAICANSGEVIVDE---LVKPTC-SIPADAT 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI----------------AHNAKFDVG 104
            +HGIT+E +KD P F  +FS  +          I                  NA +   
Sbjct: 56  AIHGITNEDVKDAPDFHLMFSNRFLPLLNGRPIIIYNSDFDTRLIIQSLDKHCNAAYVQS 115

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
             +   +                             L + C +  + +S    H AL D 
Sbjct: 116 VHDLFFKFCVPQCAMLWYAEFYGVWNEYHEDYKWQSLTNACAQQHVDVSDLIAHRALADC 175

Query: 165 HLLSDVYIK 173
            +   +   
Sbjct: 176 EMTRRLIHA 184


>gi|239945175|ref|ZP_04697112.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
          15998]
 gi|239991636|ref|ZP_04712300.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
          11379]
 gi|291448639|ref|ZP_06588029.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998]
 gi|291351586|gb|EFE78490.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998]
          Length = 237

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
          FD+ETTG D ++DRI+    V L             L P 
Sbjct: 11 FDLETTGTDVESDRIVTAALVRLDPDGTVAEQRTWLLDPG 50


>gi|196248455|ref|ZP_03147156.1| conserved hypothetical protein [Geobacillus sp. G11MC16]
 gi|196212180|gb|EDY06938.1| conserved hypothetical protein [Geobacillus sp. G11MC16]
          Length = 112

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
            ++ D+ETTG    + D I+ + A + ++   T  T+   +  N  +N
Sbjct: 62  FVIIDMETTGFSPQQGDEILAMAAAKTVNGLVTG-TYMTLVKRNRFRN 108


>gi|300864441|ref|ZP_07109312.1| Exonuclease RNase T and DNA polymerase III [Oscillatoria sp. PCC
           6506]
 gi|300337585|emb|CBN54460.1| Exonuclease RNase T and DNA polymerase III [Oscillatoria sp. PCC
           6506]
          Length = 192

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 59/180 (32%), Gaps = 7/180 (3%)

Query: 9   KIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKN-SPEALK 61
            +V D+E T      ++ ++  IIEIGAV +   + T    FQ F+ P      +     
Sbjct: 13  YLVLDLEATCCDRETINREHMEIIEIGAVMVEPKNLTIVDEFQTFIKPVRHPILTEFCKS 72

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  I+ + +   P++    +   ++ +  +         +D      +            
Sbjct: 73  LTSISQKQVDLAPTYPEAIALLKNWLSGYSNAVFGSWGDYDRKQFQQDSNFHKVPFPIAY 132

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
             ++   +   +    +    +   +        + H  + D+  ++ +   ++      
Sbjct: 133 PHVNLKQLFTEQQGLRKRPGMAKALQLVGLPLEGTHHRGIDDARNIAKLLPYILGEKQLP 192


>gi|320011855|gb|ADW06705.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
          flavogriseus ATCC 33331]
          Length = 241

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG+D + DRI+    V         R  +  + P G    P A ++HG+TD+ L
Sbjct: 11 AFDTETTGVDVEEDRIVSAALVVQDAAGGRLRVTRWLVNP-GIPVPPGATEIHGLTDDHL 69

Query: 71 KDKPSFSSI 79
          +    + + 
Sbjct: 70 QRNGRWPAP 78


>gi|293606916|ref|ZP_06689263.1| DNA polymerase III [Achromobacter piechaudii ATCC 43553]
 gi|292814648|gb|EFF73782.1| DNA polymerase III [Achromobacter piechaudii ATCC 43553]
          Length = 208

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           IV D+ETTGL +    I+E  AV +       R +   + 
Sbjct: 39 FIVADLETTGLSTATCEILEFAAVRVETCGTLAREYTQVVR 79


>gi|330001239|ref|ZP_08303928.1| exodeoxyribonuclease 10 [Klebsiella sp. MS 92-3]
 gi|328537753|gb|EGF63955.1| exodeoxyribonuclease 10 [Klebsiella sp. MS 92-3]
          Length = 219

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 62/162 (38%), Gaps = 17/162 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++D   T       + P+ R  SP+A+ +H IT+E +
Sbjct: 4   VIDTETCGL---QGGIVEIASVDIVDGQIT-NPMSHLVRPD-RPISPQAMAIHRITEEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I   +       +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEEIIPHYH-----GSPWYVAHNASFDRRVLPEMHGEGICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 S   L    K    T      H AL D ++ + + +
Sbjct: 107 WPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYITAALLL 148


>gi|299532537|ref|ZP_07045927.1| oligoribonuclease [Comamonas testosteroni S44]
 gi|298719484|gb|EFI60451.1| oligoribonuclease [Comamonas testosteroni S44]
          Length = 202

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D E TGL+   DRIIEI  V
Sbjct: 32 LDCEMTGLNPDRDRIIEIAVV 52


>gi|221068763|ref|ZP_03544868.1| Exonuclease RNase T and DNA polymerase III [Comamonas
          testosteroni KF-1]
 gi|220713786|gb|EED69154.1| Exonuclease RNase T and DNA polymerase III [Comamonas
          testosteroni KF-1]
          Length = 202

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D E TGL+   DRIIEI  V
Sbjct: 32 LDCEMTGLNPDRDRIIEIAVV 52


>gi|329116348|ref|ZP_08245065.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           parauberis NCFD 2020]
 gi|326906753|gb|EGE53667.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           parauberis NCFD 2020]
          Length = 834

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 12/183 (6%)

Query: 1   MIRKNKMRKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M ++   +  V D+E T  G  +K   II++G V +     T  T+Q  + P+    S  
Sbjct: 15  MTKEKNPKYAVIDLEATSAGTAAK---IIQVGIVIVEGGKIT-NTYQTDVNPH-EDLSDH 69

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
              L GI+D+ L   P FS I    +D   +    ++AHN KFD   +        +   
Sbjct: 70  IKLLTGISDQQLASAPEFSQIAGTIFDLIKD--CIFVAHNVKFDANLLA--EALFFEGFE 125

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +  +DT+ +A+   P       +      + +     H A+ D+   +++ + +    
Sbjct: 126 LRTPRVDTVELAQVFFPHLEKYNLTYLSTE-LNLELSDAHTAIADAMATANLLLVLQDKI 184

Query: 179 SQI 181
             +
Sbjct: 185 KSL 187


>gi|223040436|ref|ZP_03610710.1| mature parasite-infected erythrocyte surface antigen [Campylobacter
           rectus RM3267]
 gi|222878286|gb|EEF13393.1| mature parasite-infected erythrocyte surface antigen [Campylobacter
           rectus RM3267]
          Length = 289

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIET+G    + +IIEIGA++L +     + F+ F+  +         +L GIT E L
Sbjct: 75  VVDIETSGG-INSGQIIEIGALKLQNGEIIGK-FETFV--HAPYVPENISELTGITAEHL 130

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           K+ P+ + +  +F        + ++AHN +FD GFI
Sbjct: 131 KNAPNLAFVMEKF--KVFLGQSVFVAHNVRFDYGFI 164


>gi|226943525|ref|YP_002798598.1| ribonuclease T [Azotobacter vinelandii DJ]
 gi|226718452|gb|ACO77623.1| ribonuclease T [Azotobacter vinelandii DJ]
          Length = 202

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVF-LCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI A+ +               F + P  G      AL+  G
Sbjct: 11  VVVDVETGGFNSATDALLEIAAITIGMDEQGLLFPEHSHFFRVEPFEGANIEAAALEFTG 70

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +       + A  + HN+ FD+ F+NA + R +  
Sbjct: 71  IKLDHPLRMAVSEEHALQEIFRGVRKAVKSHGCKRAILVGHNSSFDLAFLNAAVARCDIK 130

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    R  H A  D+   ++++  ++ 
Sbjct: 131 RNPFHPFSSFDTATLAGLAYGQTVLAKACQSAGIEFDGREAHSARYDTEKTAELFCGIVN 190

Query: 177 GGSQIN 182
              ++ 
Sbjct: 191 RWKEMG 196


>gi|256827957|ref|YP_003156685.1| Exonuclease RNase T and DNA polymerase III [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577133|gb|ACU88269.1| Exonuclease RNase T and DNA polymerase III [Desulfomicrobium
           baculatum DSM 4028]
          Length = 177

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 57/156 (36%), Gaps = 5/156 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   DS  D    +G  ++      +R     + P   + SP  + +HGI   
Sbjct: 7   YVAIDFET--ADSCRDSACAVGLTKVQGGEIVDR-LYGLIRPPRSRFSPFCVNVHGIHWS 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P+F   + E   F    +    AHNA FD   + A               + T+ 
Sbjct: 64  DVKDAPAFREFWIENAGFLEGADF-LAAHNASFDRSVLGACCTMAGLPAP-SLPFVCTVE 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +AR +       L  +C+  G+ ++H          
Sbjct: 122 LARNQWNLRPTKLPDVCRHLGLDLNHHHAGSDAEAC 157


>gi|153834926|ref|ZP_01987593.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
 gi|156972536|ref|YP_001443443.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116]
 gi|148868652|gb|EDL67736.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
 gi|156524130|gb|ABU69216.1| hypothetical protein VIBHAR_00168 [Vibrio harveyi ATCC BAA-1116]
          Length = 210

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66
           +  D ETT LD     ++ I A +++ +   T++ F+V L  P    +    +      
Sbjct: 30 FVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLRAPQSLDSGSVKIHHIRHQ 89


>gi|302554973|ref|ZP_07307315.1| DNA polymerase III subunit epsilon [Streptomyces
          viridochromogenes DSM 40736]
 gi|302472591|gb|EFL35684.1| DNA polymerase III subunit epsilon [Streptomyces
          viridochromogenes DSM 40736]
          Length = 238

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
          FD+ETTG D +  RI+    +E+     + R  +    P G     +A+ +HGI
Sbjct: 11 FDLETTGTDPREARIVTGAVIEVRGGEPSGRR-EWLADP-GVPIPEDAVAVHGI 62


>gi|311896062|dbj|BAJ28470.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 617

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+ET+GL ++ DR++ I  +    D ++T   +   L P      P  + +HG+T E L
Sbjct: 22  VDVETSGLVARRDRVLSIAVLTFAPDGTQTGE-YTTLLDPG---CDPGPVHVHGLTAERL 77

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P+F  +        +      +AHNA+FD  F+  E  R         R+       
Sbjct: 78  RGAPAFEQVADRIGALLDG--RVMVAHNAQFDYDFLAHEFARARLHLPVARRLCTLALNR 135

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           R + P +   L SL   YG+  +    H AL D+ +L+ ++   +   +++    
Sbjct: 136 RVEPPVAGLSLASLAAYYGVPQTRA--HDALDDTRVLAGIFRSSLAEAARLGVPL 188


>gi|283954255|ref|ZP_06371779.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794273|gb|EFC33018.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 253

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 6/122 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIE+TG       I+EIGAV++ +  +  R FQ F+    ++      +L GIT E +
Sbjct: 74  IVDIESTGG-VSKGEILEIGAVKIQNSKEIGR-FQSFIK--VKEIPENITELTGITYEMV 129

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ P  + + S+F      +++ ++AHN +FD  FI+  L       L   RI       
Sbjct: 130 ENAPILAKVLSDF--RLFLKDSIFVAHNVRFDYSFISKALNECGFGILLNRRICTIEFAQ 187

Query: 131 RR 132
             
Sbjct: 188 CC 189


>gi|255658850|ref|ZP_05404259.1| putative exonuclease [Mitsuokella multacida DSM 20544]
 gi|260849253|gb|EEX69260.1| putative exonuclease [Mitsuokella multacida DSM 20544]
          Length = 219

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 21/221 (9%)

Query: 7   MRKIVFDIETTGLDSK-----------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M+ +V D+E   ++             N+ +IEIGAV L +  +    FQ ++ P     
Sbjct: 1   MKHVVVDLE---MNPVSREFREVRRKLNEEVIEIGAVRLDENFQQEAEFQCYVKPEYGPI 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAELQRI 113
                 L GIT   + DK ++++ F +F D+  E+  +  + +      +          
Sbjct: 58  KKHITSLTGITQAMVADKKTYAACFQDFVDWVGEEETKIYSWSMSDIKQLRSECRYKLPD 117

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                   R +D       +     +                ++H AL D+   S +   
Sbjct: 118 FDIEWLNERWVDLQQEFDDRLGLHNSLALKHALGAMDHKFEGTQHTALADAINTSAILTL 177

Query: 174 MMVGGS-----QINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
           M          +        +D          P ++ L++D
Sbjct: 178 MQDDAKFKETMKPVLEILQPKDDLSSSIGDLCPELAKLQKD 218


>gi|154493796|ref|ZP_02033116.1| hypothetical protein PARMER_03139 [Parabacteroides merdae ATCC
           43184]
 gi|154086409|gb|EDN85454.1| hypothetical protein PARMER_03139 [Parabacteroides merdae ATCC
           43184]
          Length = 174

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 9/171 (5%)

Query: 8   RKIVFDIE-TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R    D E   G   K   I  IG   + D    +  + + + P     +     +HGIT
Sbjct: 3   RFAAIDFEIANG---KRSSICSIGVAIIEDNKVIDSVY-MLVRPYPNFYTRFTTAIHGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +   D P F   ++       +     +AHN+ FD G + A  +  +            
Sbjct: 59  MQDTIDSPDFEEAWTRIAGRLQD--IPLVAHNSSFDEGCLRAAHEAYDLAYPKYQFYCTC 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
               R     + + L ++    G  +++   H A+ D++  + +   MM  
Sbjct: 117 RLSRRMYPFLANHQLQTVAAHCGYDLTY--HHHAMADAYACAHIAATMMRE 165


>gi|29833361|ref|NP_827995.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
           MA-4680]
 gi|29610484|dbj|BAC74530.1| putative DNA polymerase III epsilon subunit [Streptomyces
           avermitilis MA-4680]
          Length = 241

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 5/116 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D + DRI+    V         R  +  + P G      A  +HG+TDE L
Sbjct: 11  AFDTETTGVDVETDRIVSAAVVVQDAPGARPRVSRWLVNP-GVPVPAGATAVHGLTDEHL 69

Query: 71  KDKPSFSSIFSEFWDF----FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           +    + S   +                +  NA FD+  ++ EL+R     LD   
Sbjct: 70  QRNGRWPSPVMDEIARELGEQATAGRPLVVMNAPFDLTLLDRELRRHRASCLDHWF 125


>gi|297181362|gb|ADI17552.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [uncultured alpha proteobacterium HF0130_06E21]
          Length = 309

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 6/161 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+ETTGL  + D ++++  +      +T R   V+     +  + EAL+      
Sbjct: 48  RALVVDVETTGLSQETDDVMQLAMLPFDYEVETGRILTVY-----KDEAFEALREPAAPI 102

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                  +  +         + +    +  NA   +       + + +   D        
Sbjct: 103 SEEASIITGITADMVAGTTIDAEAVAGMVENADLVIAHNAKFDRPMAEKNWDCFVNKPWA 162

Query: 128 SIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDSHLL 167
                 +   +          G+        H AL D    
Sbjct: 163 CTLDGVNWLRQGYSAGKLDYLGMQFGWFYDGHQALADCEAC 203


>gi|210620723|ref|ZP_03292209.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275]
 gi|210155224|gb|EEA86230.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275]
          Length = 179

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 33/179 (18%)

Query: 9   KIVFDIETTGLDS--------------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            IV D+ETTGL+               +N +I+              R++  F+ P  ++
Sbjct: 13  FIVVDLETTGLNPFEGNEIIEIGITEIRNGKIV--------------RSYSRFVKPE-QE 57

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P   +L GI++E + ++ +   +   F  F         AHNAKFD+ F+N  L ++ 
Sbjct: 58  IPPFITELTGISNEMVANEDTIEQVLPRFRKFIGSNTII--AHNAKFDIKFLNYYLNKLG 115

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + +        L      +      L + C+ YGI   +++ H A  D+   +++++K
Sbjct: 116 LEEIKDYICTLELLKKVSSYGGKNKKLATACEYYGIE--NKNAHRASSDTQATAELFLK 172


>gi|239631926|ref|ZP_04674957.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526391|gb|EEQ65392.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 172

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 48/132 (36%), Gaps = 5/132 (3%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+  ++ D E    +S ++R I+I AV + D       F  F+    + +    ++   +
Sbjct: 1   MKEYVIMDTE---FNSTSNRAIQISAVRIRDGLHIADQFNRFIPSPDKFDQLHIIRTSNM 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                   PS      ++  +        +  + + D G I    ++ +       + ID
Sbjct: 58  RYSDYLALPSLQQTVRDYVAWMRTTTDI-VGWSIEGDAGRIRETFKQGSHGIPKNWKFID 116

Query: 126 TLSIARRKHPSS 137
              I  +++  +
Sbjct: 117 IADIVGKQYNFN 128


>gi|254383630|ref|ZP_04998980.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
 gi|194342525|gb|EDX23491.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
          Length = 241

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 11 VFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           FD ETTG+D + DRI+    +  E        R+ +  + P G    P A ++HG+TD+
Sbjct: 11 AFDTETTGVDVEQDRIVSAALIVQECAGGRV--RSTRWLVNP-GIPVPPGATEVHGLTDD 67

Query: 69 FLKDKPSFSSI 79
           L+    + + 
Sbjct: 68 HLQRNGRWPAP 78


>gi|157961523|ref|YP_001501557.1| exonuclease RNase T and DNA polymerase III [Shewanella pealeana
           ATCC 700345]
 gi|157846523|gb|ABV87022.1| Exonuclease RNase T and DNA polymerase III [Shewanella pealeana
           ATCC 700345]
          Length = 228

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 52/164 (31%), Gaps = 1/164 (0%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             D+E TGL+S+ D+I+ IG + + +     + +  + +  +G       +         
Sbjct: 47  AVDLEMTGLNSQFDQILSIGLIPIRNGLLQVSHSKHLLVSIDGSVGDSAVIHGIVDNQLT 106

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
               P  +  +       +   A     +  F    I     +  +     +  ++   +
Sbjct: 107 QAVSPKLAMAWFLEQTQGHVLVAHHAPLDLCFLKAEIQRCYGQTIQFVAIDTMAVEKRRL 166

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             +        L     R    +   + H A +D+    ++ + 
Sbjct: 167 LMQIDVIKEGSLRLDACRQRYGLPVYAAHNAAIDALACGELLLA 210


>gi|303326602|ref|ZP_07357044.1| exonuclease [Desulfovibrio sp. 3_1_syn3]
 gi|302862590|gb|EFL85522.1| exonuclease [Desulfovibrio sp. 3_1_syn3]
          Length = 175

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 10/169 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET+G          +G   + D   T   F   L P   +      ++HG+T   
Sbjct: 9   VAIDFETSG--YAAHSACAVGLARIEDGRVT-DCFYRLLRPPSARV--LFTEIHGLTWPM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+D PSF+  + E        +   +AHNA FD   + A  +         +  + TL  
Sbjct: 64  LRDAPSFAQAWPEAGAILCGAHF-LLAHNASFDRRVLLACCRAAGLPAP-EAPFLCTLKG 121

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +RR  P     LN +C+ +G        H A  D+   ++VY+++   G
Sbjct: 122 SRRSLPLPSKKLNLVCEYFG---IALKHHNAASDAQACAEVYLRLRGLG 167


>gi|332878163|ref|ZP_08445892.1| DNA polymerase III, alpha subunit [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683901|gb|EGJ56769.1| DNA polymerase III, alpha subunit [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 1486

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 73/248 (29%), Gaps = 33/248 (13%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL        +D     R ++I       +          + P+G     +
Sbjct: 2   YLIFDTETTGLPRNYNAPISDSNNWPRAVQIAWQLHDQWGALIEHQDFLIAPDGFDIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A K+HGI+    + +    +     ++    +    +  N  FD+  + AE  R   +  
Sbjct: 62  AEKVHGISTLLAEKQGVPIAEVFAAFNEALSKAQYVVGQNIGFDINIMGAEFYRYGVESP 121

Query: 119 ---------DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                          +   I   +    +    +    +   +     H A  D    + 
Sbjct: 122 LDKLPVIDTCTEATANLCKIEGGRGGKYKFPSLTELHSFLFGVPFAEAHNATADVEATAR 181

Query: 170 VYIKMMVGG---------SQINFGFKTNEDRFFKEEKKTVPNIS-----LLKRDKPLFTR 215
            + +++  G          +    F+ +             N+      L  +       
Sbjct: 182 CFFELIRRGEGFKEGTFSREYIENFQAHHSSPIGLIGLKHVNLKEASEALRSKGSTPEIT 241

Query: 216 ITKEELDE 223
            ++EE+  
Sbjct: 242 ASEEEIAL 249


>gi|220918921|ref|YP_002494225.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|219956775|gb|ACL67159.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 200

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEF 69
           D+ET GLD++ D I+ +G + +   + +    ++  + P  G+  SP +++ H +    
Sbjct: 16 LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEHGKAVSPRSVQAHQLVAGD 75

Query: 70 LKDKPS 75
           +  P 
Sbjct: 76 TRGAPP 81


>gi|189463165|ref|ZP_03011950.1| hypothetical protein BACCOP_03876 [Bacteroides coprocola DSM 17136]
 gi|189430144|gb|EDU99128.1| hypothetical protein BACCOP_03876 [Bacteroides coprocola DSM 17136]
          Length = 163

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 64/169 (37%), Gaps = 11/169 (6%)

Query: 9   KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
               D ET    +   R  +  +G V + D    +R F   + P     +    ++HG+T
Sbjct: 4   FAAIDFET----ANQCRSSVCSVGVVIVHDGMIVDR-FYSLIQPTPNYYTHWTTEIHGLT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                + P F  ++ +            +AHN+ FD G + +  +    +  +       
Sbjct: 59  HNDTDNAPIFPEVWKQINPLIKG--LPLVAHNSPFDEGCLRSVFKTYEMEYPEYPFYCTL 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +  + +     + L+++ +      +  + H A+ D+   + + +K++
Sbjct: 117 KASRKLQPELPNHRLDTVAETCN--FNLTNHHNAIADAEACAAIALKLL 163


>gi|23013261|ref|ZP_00053177.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
          exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 302

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/25 (56%), Positives = 16/25 (64%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELL 35
          V D+ETTGLD   D IIE+G V   
Sbjct: 44 VVDVETTGLDLVKDEIIELGMVLFE 68


>gi|328881184|emb|CCA54423.1| putative DNA polymerase III [Streptomyces venezuelae ATCC 10712]
          Length = 242

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG+D + DRI+    V         R  +  + P G      A  +HG+TD+ L
Sbjct: 12 AFDTETTGVDVEEDRIVSAALVVQDTVGARPRVTRWLVNP-GIPVPEGATAVHGLTDDHL 70

Query: 71 KDKPSFSSIFS 81
          +    + +   
Sbjct: 71 QRYGRWPAPVM 81


>gi|325921138|ref|ZP_08183009.1| RNAse T [Xanthomonas gardneri ATCC 19865]
 gi|325548410|gb|EGD19393.1| RNAse T [Xanthomonas gardneri ATCC 19865]
          Length = 213

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 13/185 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D     ++EI  V +            T    L P  G +  P++L++ G
Sbjct: 28  VVVDVETGGFDWNKHALLEIACVPIEMDAEGRFFPGDTASAHLVPAPGLEIDPKSLEITG 87

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 +        +  Q A  + HNA FD+ F+NA + R+   
Sbjct: 88  IVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 147

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      ++        +  L    +  G+  +    H A+ D+   + ++ K+  
Sbjct: 148 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCKIAN 207

Query: 177 GGSQI 181
                
Sbjct: 208 AWPGP 212


>gi|294634445|ref|ZP_06712981.1| oligoribonuclease [Edwardsiella tarda ATCC 23685]
 gi|291092155|gb|EFE24716.1| oligoribonuclease [Edwardsiella tarda ATCC 23685]
          Length = 181

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  ++ R I  D+E TGLD + DRIIEI 
Sbjct: 1  MSASETRLIWIDLEMTGLDPERDRIIEIA 29


>gi|197124141|ref|YP_002136092.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
          K]
 gi|196173990|gb|ACG74963.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
          K]
          Length = 200

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEF 69
           D+ET GLD++ D I+ +G + +   + +    ++  + P  G+  SP +++ H +    
Sbjct: 16 LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEQGKAVSPRSVQAHQLVAGD 75

Query: 70 LKDKP 74
           +  P
Sbjct: 76 TRGAP 80


>gi|86160112|ref|YP_466897.1| exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776623|gb|ABC83460.1| Exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 200

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEF 69
           D+ET GLD++ D I+ +G + +   + +    ++  + P  G+  SP +++ H +    
Sbjct: 16 LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEQGKAVSPRSVQAHQLVAGD 75

Query: 70 LKDKP 74
           +  P
Sbjct: 76 TRGAP 80


>gi|297559294|ref|YP_003678268.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis
          dassonvillei subsp. dassonvillei DSM 43111]
 gi|296843742|gb|ADH65762.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
          dassonvillei subsp. dassonvillei DSM 43111]
          Length = 243

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD E+TGLD  NDRI+      +   ++T       + P G     EA  +H IT E  
Sbjct: 20 AFDTESTGLDLANDRIVTAALWRIDPAARTKEVTTWLIDP-GIDIPQEATDIHHITTEHA 78

Query: 71 KDK 73
          ++ 
Sbjct: 79 REH 81


>gi|29654660|ref|NP_820352.1| exonuclease [Coxiella burnetii RSA 493]
 gi|161831411|ref|YP_001597205.1| exonuclease [Coxiella burnetii RSA 331]
 gi|165924153|ref|ZP_02219985.1| exonuclease [Coxiella burnetii RSA 334]
 gi|29541928|gb|AAO90866.1| exodeoxyribonuclease I [Coxiella burnetii RSA 493]
 gi|161763278|gb|ABX78920.1| exonuclease [Coxiella burnetii RSA 331]
 gi|165916402|gb|EDR35006.1| exonuclease [Coxiella burnetii RSA 334]
          Length = 458

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 3/128 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEA 59
           +  ++   + +D+ETTGL+   D+II+  A+   +        ++ +   P+   +    
Sbjct: 1   MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILIRLNPDVIPSPEAM 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +  H  + + +    +      E     N      + +N               N  P  
Sbjct: 61  II-HRFSIDQMLSGKAEIEAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPPY 119

Query: 120 PSRIIDTL 127
             +  +  
Sbjct: 120 THQYDNFC 127


>gi|260912289|ref|ZP_05918840.1| exonuclease [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633590|gb|EEX51729.1| exonuclease [Prevotella sp. oral taxon 472 str. F0295]
          Length = 165

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 6/170 (3%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+     D ET   + + + +  +G V + +       +   + P         + +HG+
Sbjct: 1   MKDFAAIDFET--ANFRRESVCSVGLVLVEEGKVVGSYYH-LIQPTPNYFEERCVTVHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T      +P+F  +++E       +N   +AHN  FD   + A     + +  D      
Sbjct: 58  TTADTNGQPTFPDVWAEIAPLI--RNKPLVAHNKAFDESCLKAAFAAYDMEYPDYPFYCT 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            L+   +   +   D                 H AL D+   + + +K++
Sbjct: 116 LLTARHKLKEAGLADFKLPTVASHCGYELDKHHHALADAEACAAIALKIL 165


>gi|311108015|ref|YP_003980868.1| exonuclease family protein [Achromobacter xylosoxidans A8]
 gi|310762704|gb|ADP18153.1| exonuclease family protein [Achromobacter xylosoxidans A8]
          Length = 207

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           IV D+ETTGL +    I+E  AV + +     R +   + 
Sbjct: 39 FIVADLETTGLSTATCEILEFAAVRVGEAGALEREYTQVVR 79


>gi|307730586|ref|YP_003907810.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
          CCGE1003]
 gi|307585121|gb|ADN58519.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
          CCGE1003]
          Length = 203

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          ++ M  +  D+E TGL+  +DRIIEI  V
Sbjct: 15 RSDMNLVWLDMEMTGLNPDSDRIIEIAVV 43


>gi|255034947|ref|YP_003085568.1| Exonuclease RNase T and DNA polymerase III [Dyadobacter fermentans
           DSM 18053]
 gi|254947703|gb|ACT92403.1| Exonuclease RNase T and DNA polymerase III [Dyadobacter fermentans
           DSM 18053]
          Length = 195

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 71/194 (36%), Gaps = 17/194 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGI 65
           M  +V DIE TG +   + II+IGA    D  ++  T+   + P   +  S ++ ++HG+
Sbjct: 1   MSFLVLDIEMTGPEPGWNEIIQIGAEFFDDNWRSLGTYLQNVYPENEEAFSVKSEEVHGL 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFN--------EQNAEWIAHNAKFDVGFINAELQRINKDP 117
           + + L+D P    +  EF  +            N      +   D+ F+    +      
Sbjct: 61  SLDDLEDAPMIYDVLPEFEKWIKKLNAGKPSLANVVICGQSVINDINFLRFAYRNEKMKW 120

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCK--------RYGITISHRSKHGALLDSHLLSD 169
              ++ +D  +++         +   + +         Y         H AL D+ L + 
Sbjct: 121 GFSNKQLDLHTVSYLFFQILEKNGKQVPRSLSLGSVASYFGFEREEETHNALEDARLTAK 180

Query: 170 VYIKMMVGGSQINF 183
            + +      Q+  
Sbjct: 181 CFKEFFKLIDQVKL 194


>gi|150005552|ref|YP_001300296.1| putative exonuclease/DNA polymerase III epsilon c [Bacteroides
           vulgatus ATCC 8482]
 gi|254884534|ref|ZP_05257244.1| exonuclease [Bacteroides sp. 4_3_47FAA]
 gi|294778642|ref|ZP_06744064.1| exonuclease [Bacteroides vulgatus PC510]
 gi|319640774|ref|ZP_07995487.1| exonuclease/DNA polymerase III epsilon c [Bacteroides sp. 3_1_40A]
 gi|149933976|gb|ABR40674.1| putative exonuclease/DNA polymerase III epsilon c [Bacteroides
           vulgatus ATCC 8482]
 gi|254837327|gb|EET17636.1| exonuclease [Bacteroides sp. 4_3_47FAA]
 gi|294447591|gb|EFG16169.1| exonuclease [Bacteroides vulgatus PC510]
 gi|317387586|gb|EFV68452.1| exonuclease/DNA polymerase III epsilon c [Bacteroides sp. 3_1_40A]
          Length = 162

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 6/159 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
                D ET   +++   I  +G V + +    +R F   + P          ++HG+T 
Sbjct: 3   NFAAIDFET--ANNERTSICSVGVVIVRNGEIADR-FYSLVHPEPDYYLYWNTRIHGLTQ 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E     P FS ++ +            +AHN  FD G + A  +    D  D      T 
Sbjct: 60  EDTAHAPVFSEVWKQVAPKIEG--LPLVAHNKAFDEGCLKAVFRTYCMDYPDYDFYC-TY 116

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +R+      + L+++   +G  + +     A  ++  
Sbjct: 117 QASRKLKGLRNHQLHTVAGFFGFELENHHHALADAEACA 155


>gi|312131819|ref|YP_003999159.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella
           byssophila DSM 17132]
 gi|311908365|gb|ADQ18806.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella
           byssophila DSM 17132]
          Length = 180

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 8/167 (4%)

Query: 7   MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M  +  D ET T   ++ D    +G V +         +   + P   + +    K+HGI
Sbjct: 1   MEFVAIDFETAT---AQKDSACAVGVVWVKGLDII-EEYYTLIQPPNNEYNFYNTKVHGI 56

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                ++ P+F  I+ +       +           DV +       ++   L+  +  D
Sbjct: 57  RARDTENAPTFKDIYPKLKSILQGKKIVAHNSAFDKDVLYYTMLSAGLDYSELELPKKWD 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 RK    + +L +  K YG      + H AL D+   + +Y+
Sbjct: 117 CTVKIYRKKGLPKVNLAACSKLYG---IDLTHHNALSDAMACAKLYM 160


>gi|269137702|ref|YP_003294402.1| hypothetical protein ETAE_0344 [Edwardsiella tarda EIB202]
 gi|267983362|gb|ACY83191.1| conserved hypothetical protein [Edwardsiella tarda EIB202]
 gi|304557757|gb|ADM40421.1| Oligoribonuclease [Edwardsiella tarda FL6-60]
          Length = 181

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  ++ R I  D+E TGLD + DRIIEI 
Sbjct: 1  MSASETRLIWIDLEMTGLDPQRDRIIEIA 29


>gi|269962464|ref|ZP_06176813.1| putative DNA polymerase III, epsilon subunit [Vibrio harveyi
          1DA3]
 gi|269832760|gb|EEZ86870.1| putative DNA polymerase III, epsilon subunit [Vibrio harveyi
          1DA3]
          Length = 210

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66
           +  D ETT LD     ++ I A +++ +   T++ F+V L  P    +    +      
Sbjct: 30 FVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLRAPQSLDSGSVKIHHIRHQ 89


>gi|237785812|ref|YP_002906517.1| putative DNA polymerase III subunit epsilon [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758724|gb|ACR17974.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 256

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHG 64
             D+ETTGLD+  DR++ +G V +              +  +    S        
Sbjct: 66  AVDVETTGLDADRDRLLSVGMVAINGRAIPLATADHWLVRYHEGDVSVGQSATIH 120


>gi|221369901|ref|YP_002520997.1| Exonuclease [Rhodobacter sphaeroides KD131]
 gi|221162953|gb|ACM03924.1| Exonuclease [Rhodobacter sphaeroides KD131]
          Length = 293

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 11/124 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           MI +   R I  D+ET   D+ +  I +IG   V   +   T   F   + P  R   P 
Sbjct: 4   MIPEGDFRFIALDVETACSDAGS--ICQIGLACVFPDNRIHT---FSTLVNPGTR-FDPF 57

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            ++LHGI  + +     F  +    +   +  +   +  ++ FD   +NA  +   ++P 
Sbjct: 58  NVRLHGIGPDHVSGALRFDELLDHLFPLLSRHH---LVQHSNFDKQALNAACRSCGREPP 114

Query: 119 DPSR 122
           D   
Sbjct: 115 DFRW 118


>gi|113969858|ref|YP_733651.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4]
 gi|113884542|gb|ABI38594.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4]
          Length = 228

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNG 52
          D+E TGLD  ND+I+ IG V + +         Q  +   G
Sbjct: 46 DLEMTGLDPLNDQILSIGLVPIENGTIPLGSAQQKLVQIQG 86


>gi|114047088|ref|YP_737638.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7]
 gi|113888530|gb|ABI42581.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7]
          Length = 228

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNG 52
          D+E TGLD  ND+I+ IG V + +         Q  +   G
Sbjct: 46 DLEMTGLDPLNDQILSIGLVPIENGTIPLGSAQQKLVQIQG 86


>gi|167771957|ref|ZP_02444010.1| hypothetical protein ANACOL_03330 [Anaerotruncus colihominis DSM
           17241]
 gi|167665755|gb|EDS09885.1| hypothetical protein ANACOL_03330 [Anaerotruncus colihominis DSM
           17241]
          Length = 270

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 5/170 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQVFLC-PNGRKNSPEALKLHG 64
           I+FD ET+GLD   D+IIE+ A+ +        +       F+  P G++ + + ++L G
Sbjct: 39  ILFDTETSGLDFDKDQIIELAALRIEQTAAKGLRIAGQMDQFIRLPEGQQLTEKIVELTG 98

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD  L+ +       +  +          +   A      +      +    L P    
Sbjct: 99  ITDRILEAEGVAPHKAATAFAKLINAGDGPVLLVAHNAQFDLLFVRSLLKGVKLAPRLEF 158

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  +      + L      Y +    ++ H A+ D   + +V   M
Sbjct: 159 LDTLTVYKDRRPYPHKLADAIIAYDLDGKVKNSHRAIDDVTAMLEVLRAM 208


>gi|332882889|ref|ZP_08450497.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679166|gb|EGJ52155.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 182

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 7/170 (4%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+     D ET   + +   I  +G V + D   T R +   + P     +    ++HG+
Sbjct: 19  MKDFAAIDFET--ANGQRSSICSVGLVVVRDGEITIRHY-RLVRPYPNYYNYWNTQVHGM 75

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +       F  ++ E            +AHN  FD G + A  Q    +         
Sbjct: 76  SFQDTAHAAPFPEVWREIIPLIEG--LPLVAHNRPFDEGCLKAAFQAYGMEYPGYPFHCT 133

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +          N                  H AL D+   + + +K++
Sbjct: 134 LRASRLAFGRDLPNHQLQTVALR-CGYDLTQHHHALTDAEACARIALKIL 182


>gi|328873520|gb|EGG21887.1| nucleotide binding protein 1-like protein [Dictyostelium
           fasciculatum]
          Length = 879

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
           M R N  R I  D+E TGLD   DRI+EI  +   D  +   
Sbjct: 98  MSRDN--RLIWVDLEMTGLDITKDRIMEIACIVTDDNLQVIE 137


>gi|262405023|ref|ZP_06081575.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
 gi|262348862|gb|EEY98003.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
          Length = 209

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 7/171 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD K   ++ I A ++  +   T++ F+V LC   +     ++++H I  
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLC-APQSLDSGSVRIHKIRH 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L+D  S         DF    N   + ++ ++D   ++   ++    PL    I  + 
Sbjct: 89  QDLQDGLSEKEALILLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQ 146

Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                  +  P++  DL+       + +  ++KH AL D+   + V++++ 
Sbjct: 147 IYHDKLEKHLPNAYFDLSLDAICRHLDLPLQNKHDALQDAIAAALVFVRLT 197


>gi|260770659|ref|ZP_05879590.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260614385|gb|EEX39573.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|315178389|gb|ADT85303.1| DNA polymerase III subunit epsilon [Vibrio furnissii NCTC 11218]
          Length = 212

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 73/171 (42%), Gaps = 7/171 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD     ++ I A +++ +   T++ F+V L    +     ++++H I  
Sbjct: 30  FVSLDCETTSLDPNRAELVTIAATKIIGNRILTSQPFEVRLR-APQSLDSGSVRIHRIRH 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L D  S     +    F    N   + ++ ++D   ++   +R    PL  S I  + 
Sbjct: 89  QDLVDGISEQDALTRLIAFI--GNRPLVGYHIRYDKKILDIACRRHLGFPLPNSLIEVSH 146

Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                  +  P++  DL+       + +  + KH AL D+   + VY+++ 
Sbjct: 147 IYHDKLEKHLPNAYFDLSLDAICRHLDLPLQDKHDALQDAITAALVYVRLT 197


>gi|253773201|ref|YP_003036032.1| exodeoxyribonuclease X [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161904|ref|YP_003045012.1| exodeoxyribonuclease X [Escherichia coli B str. REL606]
 gi|297519020|ref|ZP_06937406.1| exodeoxyribonuclease X [Escherichia coli OP50]
 gi|242377565|emb|CAQ32320.1| exonuclease X [Escherichia coli BL21(DE3)]
 gi|253324245|gb|ACT28847.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973805|gb|ACT39476.1| exodeoxyribonuclease X [Escherichia coli B str. REL606]
 gi|253977999|gb|ACT43669.1| exodeoxyribonuclease X [Escherichia coli BL21(DE3)]
          Length = 220

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAIAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|154705994|ref|YP_001424798.1| exodeoxyribonuclease I [Coxiella burnetii Dugway 5J108-111]
 gi|154355280|gb|ABS76742.1| exodeoxyribonuclease I [Coxiella burnetii Dugway 5J108-111]
          Length = 458

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 3/128 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEA 59
           +  ++   + +D+ETTGL+   D+II+  A+   +        ++ +   P+   +    
Sbjct: 1   MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILIRLNPDVIPSPEAM 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +  H  + + +    +      E     N      + +N               N  P  
Sbjct: 61  II-HRFSIDQMLSGKAEIEAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPPY 119

Query: 120 PSRIIDTL 127
             +  +  
Sbjct: 120 THQYDNFC 127


>gi|254784370|ref|YP_003071798.1| exonuclease [Teredinibacter turnerae T7901]
 gi|237683955|gb|ACR11219.1| putative exonuclease [Teredinibacter turnerae T7901]
          Length = 235

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 61/176 (34%), Gaps = 5/176 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEA 59
           ++R+N  R +V D E +GLD+   +++ IG V + +   T+ +   + +  +  + + ++
Sbjct: 37  LMREN--RFLVVDCEMSGLDANRSQLLSIGWVVIENARITHASGKHLLI--HADRGAGDS 92

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            ++HG+ D  +    S ++  +            +             A           
Sbjct: 93  TRIHGLHDATIAGAKSAAAAITLLAKQVPGSVLVFHHAPLDLRFLQQTAYENFRCPLLFG 152

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               +       +   +      + C+           H A+ D+   +++ +   
Sbjct: 153 YVDTMLIEQRRLQLQGAESGLRLAQCRERYGLPPISGHHNAMTDARATAELLLAQT 208


>gi|293977832|ref|YP_003543262.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri
           DMIN]
 gi|292667763|gb|ADE35398.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri
           DMIN]
          Length = 1405

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 72/187 (38%), Gaps = 17/187 (9%)

Query: 9   KIVFDIETTGLDSKND------------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
            I+FD ETTGL    +            R++++  V L +  +        + P G +  
Sbjct: 2   YIIFDTETTGLPLDFNTPIINIINLPLPRLVKLSWVLLDEKLQLIELKDYIIKPEGYEIP 61

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
             + K+HGI+ ++  +K    +   E ++   +++   I HN  FD+  + AE  RI+K 
Sbjct: 62  FNSTKIHGISTKYAIEKGIKINFVLEEFNLIIKKSNFLIGHNVFFDIKIVCAEFIRIHKK 121

Query: 117 PLDPSRIIDTLSIARRKHPSSRN----DLNSLCKRYGI-TISHRSKHGALLDSHLLSDVY 171
                + I         + + +        +L + Y          H +  D    +  +
Sbjct: 122 ISFFKKKIIDTKEISINYCAIKMGEKLKWPTLTELYKKLFNDTFIAHDSKSDVLATTKCF 181

Query: 172 IKMMVGG 178
            +++  G
Sbjct: 182 FELLRIG 188


>gi|163735140|ref|ZP_02142576.1| Exonuclease [Roseobacter litoralis Och 149]
 gi|161391598|gb|EDQ15931.1| Exonuclease [Roseobacter litoralis Och 149]
          Length = 287

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 55/180 (30%), Gaps = 11/180 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D+ET   ++    I  +G     +     + +   + P         + +HGI 
Sbjct: 1   MKFVAIDVET--ANANMASICSVGVAVFENGEL-AQEWYSLIDP-RDYFDGMNVSIHGID 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +   P+F+ I  +     ++                   +  R    P      +D+
Sbjct: 57  ETQVVGAPTFAEITEQLGAMLSDNVVVT----HTHFDRVAMHQAARHWSVPPVTCTWLDS 112

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
             +ARR           L     +       H AL D+     V   ++   ++  F   
Sbjct: 113 ARVARRTWEECAQRGYGLANVCKLIGHTFEHHNALEDAKASGVV---LLAAMNKSGFDLD 169


>gi|116492274|ref|YP_804009.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Pediococcus pentosaceus ATCC 25745]
 gi|116102424|gb|ABJ67567.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Pediococcus pentosaceus ATCC 25745]
          Length = 178

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 7/167 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET            I    + +   T+      + P   + +   +++HGI 
Sbjct: 1   MNFIAMDFET--AAPTRASACSIALTVVQNDVITDE-LYSLINPET-EFNWRNVQVHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              + D P+F          F   +   +AHNA FD   +   L+R   + L    +   
Sbjct: 57  QADVSDAPTF-PELWPVVKQFFTPDKLVVAHNATFDNSVLKKTLERYQINRLPYQTLDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +        + + LN++C   GI + H   H AL DS   +++ + 
Sbjct: 116 RTSKSFYPDYTNHKLNTICDNLGIDLQH--HHNALDDSRACANILLH 160


>gi|305681196|ref|ZP_07404003.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Corynebacterium matruchotii ATCC 14266]
 gi|305659401|gb|EFM48901.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Corynebacterium matruchotii ATCC 14266]
          Length = 444

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 9/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN--GRKNSPEALKLHGIT 66
            +  D+ET   ++    I +IG V + D  + +   +    P           +++HGIT
Sbjct: 101 FVGVDVET--ANADWGSICQIGVVRVTDGMQVDSH-EWLCRPPAGIDHFDEGNIRIHGIT 157

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P F+++F E   +  +     +AHNA+FD+   +                   
Sbjct: 158 PDMVTDAPDFAAVFPEVVAYVAD--QVLVAHNAQFDLTAFSRACHATGTPVPHWKFACSL 215

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            +    K   + + L  + +  G+     + H A+ D+   + +++++ +          
Sbjct: 216 AASRAAKLGITSHRLPVVAQHLGVE--LDNHHDAVADARACAGIFVQLALRAHATGDIET 273

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                 F         I  +  + P  T  
Sbjct: 274 VFTTLGFSLGDLNTERIYPVLSNPPTVTVA 303


>gi|154504776|ref|ZP_02041514.1| hypothetical protein RUMGNA_02285 [Ruminococcus gnavus ATCC 29149]
 gi|153794950|gb|EDN77370.1| hypothetical protein RUMGNA_02285 [Ruminococcus gnavus ATCC 29149]
          Length = 300

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 4/165 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV+D+ETTG++   D  + +  ++L         F+ +  P   K+ P+A  +HGIT E 
Sbjct: 135 IVYDLETTGVNPWKDEPLSMCIMDLQGKVI----FEHYFRPEHTKSWPDAAAIHGITPEK 190

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++   S    +    F+  +     +   FD  F+ A   ++ +             I
Sbjct: 191 VANESPMSFYRDQIQKIFDASDILITYNGINFDDSFLEAAGIKLPEVMQFDVMREYAWLI 250

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                         L           S H A  D       Y KM
Sbjct: 251 HDWDEYHQGWRWWRLIDCAAYYGYEFSAHDAAEDVKATLYCYKKM 295


>gi|116515062|ref|YP_802691.1| ribonuclease T [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|122285542|sp|Q057V1|RNT_BUCCC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|116256916|gb|ABJ90598.1| exoribonuclease T [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 221

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 65/186 (34%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIE+ G  +  D ++EI  V L      + K +      + P  G     E++  + 
Sbjct: 21  VVIDIESAGFQADTDALLEIAIVTLKMNKSGWLKIDDRLHFHIIPFKGSIIKAESVAFNK 80

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                 +   +  +  +    +    +AHNA FD  F+ A  +R+   
Sbjct: 81  IDPFNPLRGAVSEKNALKNIFKLVRKKININKCRKGILVAHNANFDHNFLMAASKRVGNL 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   CK  GI       H AL D+   + ++ +++ 
Sbjct: 141 NNPFHPFTTFDTAALSGLIFGQTVLAKACKLAGIPFDTNQAHSALYDTIQTAYLFCELVN 200

Query: 177 GGSQIN 182
              ++ 
Sbjct: 201 RWKRLG 206


>gi|194365080|ref|YP_002027690.1| ribonuclease T [Stenotrophomonas maltophilia R551-3]
 gi|194347884|gb|ACF51007.1| ribonuclease T [Stenotrophomonas maltophilia R551-3]
          Length = 194

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 13/184 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G DS+ + ++EI AV +    +      +T    + P  G +  P++L++ G
Sbjct: 11  VVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHVVPAEGLEIDPKSLEVTG 70

Query: 65  ITDEFLKD--------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 +        +  Q A  + HNA FD+GF+NA + R    
Sbjct: 71  IILDHPFRLAKEEKAALDHIFTPVRAAMKKYGCQRAILVGHNAHFDLGFVNAAVARTGHK 130

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      ++        +  L       G+       H A+ D+   + ++  +  
Sbjct: 131 RNPFHPFSVFDTVTLAGIAYGQTVLARAANAAGLGWDANEAHSAVYDTEQTARLFCTIAN 190

Query: 177 GGSQ 180
              +
Sbjct: 191 AWPR 194


>gi|313637226|gb|EFS02740.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           seeligeri FSL S4-171]
          Length = 921

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 5/156 (3%)

Query: 12  FDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+ETTG  + + DRII+  A  +    +   T+  FL P  +       +L GI+ + +
Sbjct: 2   VDLETTGNQASREDRIIQFAACFVESGKRL-ETYATFLNPE-KPIPAFIQELTGISPKDV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD P F  +         +    ++AHN  FD  F+  E+ R         ++       
Sbjct: 60  KDAPLFEDVAPIIAGLLED--TIFVAHNVSFDWTFLEREMTRAGISLGKMKKLDTVELAR 117

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
                     L  L   +G+      +  +  +   
Sbjct: 118 IMYPGIDSYKLQDLSDEFGLGHDKPHQADSDAEVTA 153


>gi|300781342|ref|ZP_07091196.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium
          ATCC 33030]
 gi|300533049|gb|EFK54110.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium
          ATCC 33030]
          Length = 194

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
            D+ETTGL      ++ IG V + D    
Sbjct: 24 AVDVETTGLKPDKHHLVSIGWVPVTDRVID 53


>gi|149188401|ref|ZP_01866694.1| DNA polymerase III, epsilon subunit [Vibrio shilonii AK1]
 gi|148837619|gb|EDL54563.1| DNA polymerase III, epsilon subunit [Vibrio shilonii AK1]
          Length = 197

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLD 36
           +V D ETTGLD+  + I+ +G VE+ +
Sbjct: 10 YLVLDFETTGLDANTNTILSLGWVEIAN 37


>gi|166711531|ref|ZP_02242738.1| ribonuclease T [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 211

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 56/185 (30%), Gaps = 13/185 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNG--RKNSPEALKLH 63
           +V D+ET G DS    ++EI  V +            T    L P               
Sbjct: 26  VVVDVETGGFDSNKHALLEIACVPIEMDADGRFFPGDTASAHLVPAPGLEIEPKSLEITG 85

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAELQRINKD 116
            + D   +            +            Q A  + HNA FD+ F+NA + R+   
Sbjct: 86  IVLDHPFRLAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 145

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      ++        +  L    +  G+  +    H A+ D+   + ++ K+  
Sbjct: 146 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCKIAN 205

Query: 177 GGSQI 181
                
Sbjct: 206 AWPGP 210


>gi|15668541|ref|NP_247339.1| hypothetical protein MJ_0365 [Methanocaldococcus jannaschii DSM
          2661]
 gi|2495934|sp|Q57811|Y365_METJA RecName: Full=Uncharacterized protein MJ0365
 gi|1499152|gb|AAB98356.1| hypothetical protein MJ_0365 [Methanocaldococcus jannaschii DSM
          2661]
          Length = 176

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLC 49
          M K + DIETTGL+    RI+ IG V+L D          + + + 
Sbjct: 1  MAKAIIDIETTGLNPMEHRIVAIG-VKLGDRDIILMDESEYYLLVN 45


>gi|333023692|ref|ZP_08451756.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
          Tu6071]
 gi|332743544|gb|EGJ73985.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
          Tu6071]
          Length = 239

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          FD+ETTG D + DRI+    + L        T    L P G +   EA  +HGI 
Sbjct: 11 FDLETTGTDVEQDRIVTAAVIRLDSSGAVAHTRTWLLDP-GVEIPAEATAIHGIP 64


>gi|300310766|ref|YP_003774858.1| oligoribonuclease [Herbaspirillum seropedicae SmR1]
 gi|300073551|gb|ADJ62950.1| oligoribonuclease (3'->5' exoribonuclease) protein
          [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +R N+M  I  D+E TGLD   DRIIE+  V
Sbjct: 9  VRPNEMNLIWVDMEMTGLDPDKDRIIEVAVV 39


>gi|220980061|emb|CAP72253.1| Hypothetical protein [Escherichia coli LF82]
 gi|323934293|gb|EGB30715.1| exonuclease [Escherichia coli E1520]
          Length = 185

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 66/173 (38%), Gaps = 9/173 (5%)

Query: 7   MRKIV--FDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVF---LCPNGRKNSPEAL 60
           M  IV   DIE+TGLD     +IIEI         +T R          P  R   P+A 
Sbjct: 1   MTTIVAGIDIESTGLDFLAGHKIIEIAITRYE--LETQRHIDSLEMRFNP-RRNIDPKAQ 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI+ E L  +P  S+  SE   +    +A    +   FD+ FI  E         D 
Sbjct: 58  AVHGISLEQLAAEPLLSNHASEIGAYMEACSAWVAHNGEAFDIPFIRHEFSGYGVRLPDV 117

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             I   LS         R  L  L    G    H   H AL D++L+   + K
Sbjct: 118 PVIDTMLSGLWATEDGKRPRLEELAFSLGFIYDHAKAHSALYDTNLMMQCFFK 170


>gi|186475543|ref|YP_001857013.1| oligoribonuclease [Burkholderia phymatum STM815]
 gi|184192002|gb|ACC69967.1| Exonuclease RNase T and DNA polymerase III [Burkholderia phymatum
           STM815]
          Length = 207

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 51/180 (28%), Gaps = 9/180 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGI 65
           M  +  D+E TGLD  NDRIIEI  V       TN T    +  P    +  +       
Sbjct: 17  MNLVWLDMEMTGLDPDNDRIIEIAVV------VTNSTLDKMVEGPVLAIHQSDETLGKMD 70

Query: 66  TDEFLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                    S     + +      +               G        I +D    +R 
Sbjct: 71  DWNKNTHGRSGLIDRVRASTVTEADATERIRAFLGQHVPPGKSPMCGNSICQDRRFMARW 130

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +  L           + L  LC+R+   I    +  A+  +       I  +    +   
Sbjct: 131 MPELETFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELRYYREHFL 190


>gi|145600855|ref|YP_001164931.1| oligoribonuclease [Yersinia pestis Pestoides F]
 gi|108777113|gb|ABG19632.1| oligoribonuclease [Yersinia pestis Nepal516]
 gi|108781821|gb|ABG15879.1| oligoribonuclease [Yersinia pestis Antiqua]
 gi|145212551|gb|ABP41958.1| oligoribonuclease [Yersinia pestis Pestoides F]
          Length = 227

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          ++ +N+   I  D+E TGLD + DRIIEI 
Sbjct: 46 IMAENQNNLIWIDLEMTGLDPERDRIIEIA 75


>gi|21957334|gb|AAM84211.1|AE013664_6 hypothetical protein y0623 [Yersinia pestis KIM 10]
 gi|45435231|gb|AAS60791.1| Oligoribonuclease (3'->5' exoribonuclease) [Yersinia pestis
          biovar Microtus str. 91001]
          Length = 230

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          ++ +N+   I  D+E TGLD + DRIIEI 
Sbjct: 49 IMAENQNNLIWIDLEMTGLDPERDRIIEIA 78


>gi|325955054|ref|YP_004238714.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
 gi|323437672|gb|ADX68136.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
          Length = 453

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 73/195 (37%), Gaps = 8/195 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIE TG     + II+I      D   T   F   + P  RK  P   KL  ITD+
Sbjct: 2   FAILDIEATGGKVGEESIIDIAIFRY-DGQTTVDQFISLVNP-MRKIDPFVQKLTNITDK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F  I     +    ++   + HN KFD   +  E +++  D       IDT  
Sbjct: 60  MVLTAPKFHEIAKRIVE--ITEDCILVGHNVKFDYRMLRQEFKKLGYD--YEKDWIDTFE 115

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
            A++  P+  +          + I    +H A  D+     ++ +++          K +
Sbjct: 116 FAQKLIPNMESYSL-GKLTNALGIPITDRHRASGDARATLKLF-QLLRDKDSEKIIQKKS 173

Query: 189 EDRFFKEEKKTVPNI 203
             R  K+ K+    +
Sbjct: 174 GLRTEKKVKEKYQKL 188


>gi|255719107|ref|XP_002555834.1| KLTH0G18590p [Lachancea thermotolerans]
 gi|238937218|emb|CAR25397.1| KLTH0G18590p [Lachancea thermotolerans]
          Length = 323

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 3/62 (4%)

Query: 8   RKIV-FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHG 64
           R IV  D E TGLD  ND IIEI  +             ++  +  + +           
Sbjct: 74  RPIVWVDCEMTGLDHVNDHIIEICCIITDGDLNIIDEAGYESVIHCDKKIMDAMNEWCID 133

Query: 65  IT 66
             
Sbjct: 134 HH 135


>gi|260773739|ref|ZP_05882654.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260610700|gb|EEX35904.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 237

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 52/165 (31%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ET+GL+ + D I+ +G + +     +  T Q +   +      E   ++ I  E 
Sbjct: 53  VVLDFETSGLNPRQDEILSVGMINIHYPVMSLATAQHYYVESEHCIEAETAVVNHIVPET 112

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L    S   +     +  + +         +         L+     PL     +     
Sbjct: 113 LLGGISRHELIECLVESLSGKVVIAHGAEIEKQFLRQLLSLEDSLPLPLIFLDTMRLERS 172

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +       DL     R    +     H A  D     ++++ +
Sbjct: 173 LIKYRGIMYPDLRLAHIREQKGLPPYLAHNAFADVVATGELFLAL 217


>gi|262199242|ref|YP_003270451.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262082589|gb|ACY18558.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 308

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 6/102 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           VFD+ETTG D + D+IIE+  V+  L     NR ++  + P+       A ++HGI+ + 
Sbjct: 8   VFDVETTGTDRRRDQIIEL-CVQFGLGDDAPNRVWR--IRPDVAIEPA-AQEVHGISMDD 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           L + P F  +  E  +         + +N  FD+G + AE +
Sbjct: 64  LAECPRFPEVADELRE-LFASATVLVGYNVSFDIGMLQAEYE 104


>gi|317407747|gb|EFV87675.1| exonuclease [Achromobacter xylosoxidans C54]
          Length = 183

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           +V D+ETTGL + +  I+E  AV +       R +   + 
Sbjct: 17 FVVADLETTGLSTASCEILEFAAVRVGADGAAEREYAQVVR 57


>gi|307326746|ref|ZP_07605938.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
          violaceusniger Tu 4113]
 gi|306887509|gb|EFN18503.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
          violaceusniger Tu 4113]
          Length = 241

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 22/77 (28%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG+D ++DRI+    V            +  + P                    
Sbjct: 11 AFDTETTGVDVEHDRIVSAALVVQRGTGSLPEIRRWLVSPGVPVPPAATEIHGLTDAHLQ 70

Query: 71 KDKPSFSSIFSEFWDFF 87
          +     + +  E     
Sbjct: 71 RHGRWPAPVMDEMARAI 87


>gi|15607062|ref|NP_214444.1| hypothetical protein aq_2108 [Aquifex aeolicus VF5]
 gi|2984321|gb|AAC07843.1| putative protein [Aquifex aeolicus VF5]
          Length = 210

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLC 49
          R +VFD E T LD K  +++ IGAVE+ +     +++F   L 
Sbjct: 36 RFVVFDCEATELDVKKAKLLSIGAVEVKNLEIDLSKSFYEILK 78


>gi|329938978|ref|ZP_08288352.1| exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329301863|gb|EGG45756.1| exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 242

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 5/115 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D + DRI+    V         R  +  + P G     EA  +HG+T+E L
Sbjct: 11  AFDTETTGVDVEGDRIVSAAVVVQEAAGARPRVRRWLVDP-GVPVPAEATAVHGLTEEHL 69

Query: 71  KDKPSFSSIFSEFW----DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +    + +           +        +  NA FD+  ++ EL+R     LD  
Sbjct: 70  RRNGRWPAPVMREMADELQYLAAAGRPLVVMNAPFDLTLLDRELRRHRASSLDRW 124


>gi|304411957|ref|ZP_07393568.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
          OS183]
 gi|307303275|ref|ZP_07583030.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
          BA175]
 gi|304349817|gb|EFM14224.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
          OS183]
 gi|306913635|gb|EFN44057.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
          BA175]
          Length = 228

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK 39
          +  D+E TGL+ + D+I+ IG V +     
Sbjct: 43 VAMDLEMTGLNPQQDQILSIGLVPIEHGEI 72


>gi|16082354|ref|NP_394831.1| hypothetical protein Ta1376 [Thermoplasma acidophilum DSM 1728]
 gi|10640719|emb|CAC12497.1| hypothetical protein [Thermoplasma acidophilum]
          Length = 188

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLD 36
          I  D ETTGLD     +I +GAV   D
Sbjct: 2  IFIDTETTGLDPTKCSVISVGAVVYED 28


>gi|304386198|ref|ZP_07368531.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
 gi|304327555|gb|EFL94782.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 181

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 8/171 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI  N    +  D ET            I    + +   T+      + P  +      +
Sbjct: 1   MIFLN---FVAIDFET--AAPARASACSIALTVVQNDQITDE-LYSLINPETK-FHWRNV 53

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGI +  ++D P+F          F   +   +AHNA FD   +   L+R   + L  
Sbjct: 54  QVHGIHEADVQDAPTF-PELWPILQPFFTPDQLVVAHNANFDNSVLKKTLERYELNRLPY 112

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +    +          + LN+LC   GI + H         +     +Y
Sbjct: 113 QTLDTLRTSRSFFPNYPNHKLNTLCDNLGIELEHHHNALDDSLACANILLY 163


>gi|297625330|ref|YP_003687093.1| DNA polymerase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921095|emb|CBL55640.1| DNA polymerase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 522

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 54/170 (31%), Gaps = 13/170 (7%)

Query: 9   KIVFDIET----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  D ET    +G+ +      +I  V +      +R F   L P    +  E   LHG
Sbjct: 348 FVAADFETANRSSGVSA-----CQIALVRVESGRVVDR-FNTLLKPPSGFDDFEFTYLHG 401

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+    +  PS+  I           +A   AHNA FD        +  +   L      
Sbjct: 402 ISARDTRTAPSWPDIIPAIRG--FAGDATVYAHNAPFDSRVWRQLDEFFHTRSLPDHFFC 459

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             L+ ARR  P   N                  H A  D+   + +   +
Sbjct: 460 SYLT-ARRMMPGLDNYRLPTVLERCAPHFVLDHHKADSDAEACALIVAAL 508


>gi|218885422|ref|YP_002434743.1| exonuclease RNase T and DNA polymerase III [Desulfovibrio
          vulgaris str. 'Miyazaki F']
 gi|218756376|gb|ACL07275.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
          vulgaris str. 'Miyazaki F']
          Length = 267

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPE 58
          M  +  D E TGL+   D ++ +GAV L       + TF+  L P        
Sbjct: 23 MVFVSLDCEMTGLNPARDDLLAVGAVVLRGMRLDLSATFRGLLRPACPVRPEG 75


>gi|117920025|ref|YP_869217.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp.
          ANA-3]
 gi|117612357|gb|ABK47811.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp.
          ANA-3]
          Length = 228

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK 39
          I  D+E TGL+   D+I+ IG V + + + 
Sbjct: 43 IAMDLEMTGLNPLQDQILSIGLVPIENGAI 72


>gi|238793401|ref|ZP_04637027.1| Oligoribonuclease [Yersinia intermedia ATCC 29909]
 gi|238727370|gb|EEQ18898.1| Oligoribonuclease [Yersinia intermedia ATCC 29909]
          Length = 181

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + +N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MAENQNNLIWIDLEMTGLDPERDRIIEIA 29


>gi|237710481|ref|ZP_04540962.1| exonuclease [Bacteroides sp. 9_1_42FAA]
 gi|237726988|ref|ZP_04557469.1| exonuclease [Bacteroides sp. D4]
 gi|265756507|ref|ZP_06090713.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229433844|gb|EEO43921.1| exonuclease [Bacteroides dorei 5_1_36/D4]
 gi|229455203|gb|EEO60924.1| exonuclease [Bacteroides sp. 9_1_42FAA]
 gi|263233695|gb|EEZ19310.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 162

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 6/159 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
                D ET   +++   I  +G V + +    +R F   + P          ++HG+T 
Sbjct: 3   NFAAIDFET--ANNERTSICSVGVVIVRNGEIADR-FYSLVHPEPDYYLYWNTRIHGLTQ 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E     P FS ++ +            +AHN  FD   + A  +    D  D      T 
Sbjct: 60  EDTAHAPVFSEVWKQVAPKIEG--LPLVAHNKAFDERCLKAVFRTYCMDYPDYDFYC-TY 116

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +R+      + L+++   +G  + +     A  ++  
Sbjct: 117 QASRKLKGLRNHQLHTVAGFFGFELENHHHALADAEACA 155


>gi|222628577|gb|EEE60709.1| hypothetical protein OsJ_14204 [Oryza sativa Japonica Group]
          Length = 142

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
            D+E TGLD   DRI+EI  + + D   T R
Sbjct: 74  IDLEMTGLDITKDRILEIACI-ITDGKLTKR 103


>gi|304440352|ref|ZP_07400241.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371104|gb|EFM24721.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 296

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
            +  DIET GLD K ++IIEIGA++      +   F   + 
Sbjct: 129 FVFLDIETDGLDEKTNKIIEIGAIKSD----SKEEFHKIVK 165


>gi|296158296|ref|ZP_06841128.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. Ch1-1]
 gi|295891632|gb|EFG71418.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. Ch1-1]
          Length = 207

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 9/199 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKL 62
           ++ M  +  D+E TGL+  +DRIIEI  V       TN T    +  P    +  +    
Sbjct: 15  RSDMNLVWLDMEMTGLEPDSDRIIEIAVV------VTNSTLDRMVEGPVLAIHQSDETLA 68

Query: 63  HGITDEFLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                       S     + +      +         +     G        I +D    
Sbjct: 69  GMDQWNQNTHGRSGLIDRVKASTVSEADATEQIRDFLSVYVPPGKSPMCGNSICQDRRFM 128

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +R +  L           + L  LC+R+   I    +  A+  +       I  +    +
Sbjct: 129 ARWMPDLERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYRE 188

Query: 181 INFGFKTNEDRFFKEEKKT 199
                   +     E+   
Sbjct: 189 HFLIPSAPDAVNGAEKAAE 207


>gi|262392974|ref|YP_003284828.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|262336568|gb|ACY50363.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
          Length = 209

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC 49
           +  D ETT LD     ++ I A +++ +   T++ F+V L 
Sbjct: 30 YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSQPFEVRLR 71


>gi|332073070|gb|EGI83549.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Streptococcus pneumoniae GA17570]
          Length = 168

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD  
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDAN 98


>gi|212693424|ref|ZP_03301552.1| hypothetical protein BACDOR_02940 [Bacteroides dorei DSM 17855]
 gi|212664068|gb|EEB24642.1| hypothetical protein BACDOR_02940 [Bacteroides dorei DSM 17855]
          Length = 162

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 6/159 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
                D ET   +++   I  +G V + +    +R F   + P          ++HG+T 
Sbjct: 3   NFAAIDFET--ANNERTSICSVGVVIVRNGEIADR-FYSLVHPEPDYYLYWNTRIHGLTQ 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E     P FS ++ +            +AHN  FD   +    +    D  D      T 
Sbjct: 60  EDTAHAPVFSEVWKQVAPKIEG--LPLVAHNKAFDERCLKTVFRTYCMDYPDYDFYC-TY 116

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +R+      + L+++   +G  + +     A  ++  
Sbjct: 117 QASRKLKGLRNHQLHTVAGFFGFELENHHHALADAEACA 155


>gi|169752556|gb|ACA70074.1| Exonuclease RNase T and DNA polymerase III [Yersinia
          pseudotuberculosis YPIII]
 gi|186696803|gb|ACC87432.1| Exonuclease RNase T and DNA polymerase III [Yersinia
          pseudotuberculosis PB1/+]
          Length = 227

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          ++ +N+   I  D+E TGLD + DRIIEI 
Sbjct: 46 IMAENQNNLIWIDLEMTGLDPERDRIIEIA 75


>gi|309702068|emb|CBJ01382.1| exodeoxyribonuclease X [Escherichia coli ETEC H10407]
 gi|323937102|gb|EGB33382.1| exonuclease [Escherichia coli E1520]
          Length = 220

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|224537614|ref|ZP_03678153.1| hypothetical protein BACCELL_02494 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520756|gb|EEF89861.1| hypothetical protein BACCELL_02494 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 164

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 53/159 (33%), Gaps = 5/159 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
                D ET   + +   +  +G V + +      T+   + P     +    ++HG+T 
Sbjct: 3   NFAAIDFET--ANEQRTSVCSVGIVIVREGEIV-DTYYSLIRPEPEYYTYWNTRVHGLTL 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                 P F +++ E            IAHN  FD   + A  +  + D  D        
Sbjct: 60  ADTAKAPIFPTVWQEIAPLIEG--LPLIAHNKGFDESCLKAVFRTYSLDYPDYEFHCTLS 117

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           +  RR        L+++   +G  +       A  ++  
Sbjct: 118 TARRRIKGLPNYQLHTVAAYFGYELEQHHHALADAEACA 156


>gi|190573537|ref|YP_001971382.1| ribonuclease T [Stenotrophomonas maltophilia K279a]
 gi|190011459|emb|CAQ45077.1| putative ribonuclease T [Stenotrophomonas maltophilia K279a]
          Length = 216

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 13/184 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G DS+ + ++EI AV +    +      +T    + P  G +  P++L++ G
Sbjct: 33  VVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHVVPAEGLEIDPKSLEVTG 92

Query: 65  ITDEFLKD--------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 +        +  Q A  + HNA FD+GF+NA + R    
Sbjct: 93  IILDHPFRLAKEEKAALDHIFTPVRAAMKKYGCQRAILVGHNAHFDLGFVNAAVARTGHK 152

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      ++        +  L       G+       H A+ D+   + ++  +  
Sbjct: 153 RNPFHPFSVFDTVTLAGIAYGQTVLARAATAAGLGWDANEAHSAVYDTEQTARLFCTIAN 212

Query: 177 GGSQ 180
              +
Sbjct: 213 AWPR 216


>gi|293411964|ref|ZP_06654689.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469519|gb|EFF12008.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 185

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 66/173 (38%), Gaps = 9/173 (5%)

Query: 7   MRKIV--FDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVF---LCPNGRKNSPEAL 60
           M  IV   DIE+TGLD     +IIEI         +T R          P  R   P+A 
Sbjct: 1   MTTIVAGIDIESTGLDFLAGHKIIEIAITRYE--LETQRHIDSLEMRFNP-RRNIDPKAQ 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI+ E L  +P  S+  SE   +    +A    +   FD+ FI  E         + 
Sbjct: 58  AVHGISLEQLAAEPLLSNHASEIGAYMGACSAWIAHNGEAFDIPFIRHEFSGYGVRLPEV 117

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             I   LS         R  L  L    G    H   H AL D++L+   + K
Sbjct: 118 PVIDTMLSGLWATEDGKRPRLEELAFSLGFIYDHAKAHSALYDTNLMMQCFFK 170


>gi|205355328|ref|ZP_03222099.1| exonuclease possibly DNA polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346562|gb|EDZ33194.1| exonuclease possibly DNA polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 233

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 6/122 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIE+TG       I+EIGAV++ +  +  R FQ F+    ++      +L GIT E +
Sbjct: 51  IVDIESTGG-VSKGEILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYEMV 106

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ PS + + S+F      +++ ++AHN +FD  FI+  L       L   RI       
Sbjct: 107 ENAPSLTKVLSDF--RLFLKDSIFVAHNVRFDYSFISKALNECGFGILLNRRICTIEFAQ 164

Query: 131 RR 132
             
Sbjct: 165 CC 166


>gi|91228447|ref|ZP_01262371.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|269966808|ref|ZP_06180881.1| putative DNA polymerase III, epsilon subunit [Vibrio
          alginolyticus 40B]
 gi|91187982|gb|EAS74290.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|269828475|gb|EEZ82736.1| putative DNA polymerase III, epsilon subunit [Vibrio
          alginolyticus 40B]
          Length = 209

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC 49
           +  D ETT LD     ++ I A +++ +   T++ F+V L 
Sbjct: 30 YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSQPFEVRLR 71


>gi|145218937|ref|YP_001129646.1| exonuclease, RNase T and DNA polymerase III [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205101|gb|ABP36144.1| Exonuclease, RNase T and DNA polymerase III [Chlorobium
           phaeovibrioides DSM 265]
          Length = 194

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 72/187 (38%), Gaps = 17/187 (9%)

Query: 7   MRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           M+K++ FD+ETTG+D + + II+   +  +D +    +F++ + P  G +   EAL++ G
Sbjct: 1   MKKVLWFDLETTGIDPERNGIIQFAGLAEIDGAVV-ESFEIKMQPHEGAQIDDEALEVTG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ--------NAEWIAHNAKFDVGFINAELQRINKD 116
            T E +      +  + +  DF                  +N  FD+ F++   +R ++ 
Sbjct: 60  FTREAIPTFTPHAEAYRQIDDFLARHVSRFDRNDKFYPAGYNVHFDLEFLSRMFKRFDQY 119

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR------SKHGALLDSHLLSDV 170
            L        L      +        SL      T          + H AL D      +
Sbjct: 120 GLGSFTNWRMLDPQPILNLMDYMGRISLPNHRLQTACDHFGVKLENAHDALADITATRAL 179

Query: 171 YIKMMVG 177
             +++  
Sbjct: 180 MQRLLEH 186


>gi|290956499|ref|YP_003487681.1| DNA exonuclease [Streptomyces scabiei 87.22]
 gi|260646025|emb|CBG69116.1| putative DNA exonuclease [Streptomyces scabiei 87.22]
          Length = 239

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
          FD+ETTG D +  RI+    +E+ D  +     +    P G +   EA+ +HGI
Sbjct: 11 FDLETTGTDPREARIVTGAVIEVRDGERIG-HREWLADP-GVEIPEEAVAVHGI 62


>gi|294628378|ref|ZP_06706938.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
 gi|292831711|gb|EFF90060.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
          Length = 242

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDEF 69
           FD ETTG+D + DRI+   AV + D   T  R  +  + P G     EA  +HG+T+E 
Sbjct: 12 AFDTETTGVDVETDRIVS-AAVVVQDAPGTRPRVSRWLVNP-GVPVPREATAVHGLTEER 69

Query: 70 LKDKPSFSSIFSEFWD 85
          L+    + +       
Sbjct: 70 LQRTGRWPAPVMYEIA 85


>gi|288934625|ref|YP_003438684.1| exonuclease RNase T and DNA polymerase III [Klebsiella variicola
           At-22]
 gi|290508826|ref|ZP_06548197.1| exodeoxyribonuclease X [Klebsiella sp. 1_1_55]
 gi|288889334|gb|ADC57652.1| Exonuclease RNase T and DNA polymerase III [Klebsiella variicola
           At-22]
 gi|289778220|gb|EFD86217.1| exodeoxyribonuclease X [Klebsiella sp. 1_1_55]
          Length = 219

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 17/162 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++D   T       + P+ R  +P+A+ +H IT+E +
Sbjct: 4   VIDTETCGL---QGGIVEIASVDIVDGRIT-NPMSHLVRPD-RPITPQAMAIHRITEEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I   +       +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEEIIPHY-----LGSPWYVAHNASFDRRVLPEMSGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 S   L    K    T      H AL D ++ + + +
Sbjct: 107 WPGIKYSNMGLYKSRKLNVATPPGLHHHRALYDCYITAALLL 148


>gi|237808201|ref|YP_002892641.1| ribonuclease T [Tolumonas auensis DSM 9187]
 gi|237500462|gb|ACQ93055.1| ribonuclease T [Tolumonas auensis DSM 9187]
          Length = 206

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 65/194 (33%), Gaps = 13/194 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + K D ++E+ A  +++        ++T    + P  G      A+  +G
Sbjct: 13  VVIDVETAGFNPKTDALLEMAATTLKMDQDGWLSLDQTIHFHVEPFEGANIEKAAIDFNG 72

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNA--------EWIAHNAKFDVGFINAELQRINKD 116
           I                        +            +AHNA FD  F+ A  +R +  
Sbjct: 73  IDPFNPLRGAVSEYDALHETFKIIRKGMKAEGCNRAIVVAHNATFDHSFMMAASERASLK 132

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      + A       +  L   C+   I   +   H AL D+   ++++  ++ 
Sbjct: 133 RNPFHPFATFDTAALAGLALGQTVLAKACQTAAIPFDNNEAHSALYDTERTAELFCYIVN 192

Query: 177 GGSQINFGFKTNED 190
               +      + +
Sbjct: 193 KWKSLGGWPLADSE 206


>gi|206579741|ref|YP_002237768.1| exodeoxyribonuclease X [Klebsiella pneumoniae 342]
 gi|206568799|gb|ACI10575.1| exodeoxyribonuclease X [Klebsiella pneumoniae 342]
          Length = 219

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 61/162 (37%), Gaps = 17/162 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++D   T       + P+ R  +P+A+ +H IT+E +
Sbjct: 4   VIDTETCGL---QGGIVEIASVDIVDGRIT-NPMSHLVRPD-RPITPQAMAIHRITEEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I           +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEEIIPY-----YLGSPWYVAHNASFDRRVLPEMSGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 S   L    K    T      H AL D ++ + + +
Sbjct: 107 WPGIKYSNMGLYKSRKLNVATPPGLHHHRALYDCYITAALLL 148


>gi|152988793|ref|YP_001347003.1| ribonuclease T [Pseudomonas aeruginosa PA7]
 gi|166200015|sp|A6V1R8|RNT_PSEA7 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|150963951|gb|ABR85976.1| ribonuclease T [Pseudomonas aeruginosa PA7]
          Length = 224

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 13/193 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI A  +      +     T+   + P  G    P AL+  G
Sbjct: 32  VVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTG 91

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +       + A  + HN+ FD+GF+NA + R    
Sbjct: 92  IKLDHPLRMAVQEEQALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIK 151

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  G+   +R  H A  D+   ++++  ++ 
Sbjct: 152 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVN 211

Query: 177 GGSQINFGFKTNE 189
              ++      ++
Sbjct: 212 RWKEMGGWMDDDD 224


>gi|15598724|ref|NP_252218.1| ribonuclease T [Pseudomonas aeruginosa PAO1]
 gi|107103040|ref|ZP_01366958.1| hypothetical protein PaerPA_01004109 [Pseudomonas aeruginosa PACS2]
 gi|116051527|ref|YP_789637.1| ribonuclease T [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218890245|ref|YP_002439109.1| ribonuclease T [Pseudomonas aeruginosa LESB58]
 gi|254242188|ref|ZP_04935510.1| ribonuclease T [Pseudomonas aeruginosa 2192]
 gi|296387969|ref|ZP_06877444.1| ribonuclease T [Pseudomonas aeruginosa PAb1]
 gi|313108873|ref|ZP_07794856.1| ribonuclease T [Pseudomonas aeruginosa 39016]
 gi|14548235|sp|Q9HY82|RNT_PSEAE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|122260667|sp|Q02QZ9|RNT_PSEAB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|9949677|gb|AAG06916.1|AE004773_5 ribonuclease T [Pseudomonas aeruginosa PAO1]
 gi|115586748|gb|ABJ12763.1| ribonuclease T [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126195566|gb|EAZ59629.1| ribonuclease T [Pseudomonas aeruginosa 2192]
 gi|218770468|emb|CAW26233.1| ribonuclease T [Pseudomonas aeruginosa LESB58]
 gi|310881358|gb|EFQ39952.1| ribonuclease T [Pseudomonas aeruginosa 39016]
          Length = 224

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 13/193 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI A  +      +     T+   + P  G    P AL+  G
Sbjct: 32  VVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTG 91

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +       + A  + HN+ FD+GF+NA + R    
Sbjct: 92  IKLDHPLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIK 151

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  G+   +R  H A  D+   ++++  ++ 
Sbjct: 152 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVN 211

Query: 177 GGSQINFGFKTNE 189
              ++      ++
Sbjct: 212 RWKEMGGWMDDDD 224


>gi|152992669|ref|YP_001358390.1| exonuclease [Sulfurovum sp. NBC37-1]
 gi|151424530|dbj|BAF72033.1| exonuclease [Sulfurovum sp. NBC37-1]
          Length = 244

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++FD ETTG + + DRII+IGA+ +    +    F          +       +   D
Sbjct: 3   KYVLFDTETTG-NQEADRIIQIGAMIVHSKDEI-EVFDELCSTQVPISIEAMEVHNITPD 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                     + F++     N      IAHN  FD+G +  E    +   +D  R    
Sbjct: 61  VIAGKPTYSETAFAKRVQELNTTENYLIAHNISFDLGMLEKEGFVNHYTLIDTVRCTKH 119


>gi|26108511|gb|AAN80713.1|AE016761_288 Exodeoxyribonuclease X [Escherichia coli CFT073]
          Length = 238

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 22  IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 76

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 77  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 124

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 125 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 171


>gi|325917515|ref|ZP_08179720.1| RNAse T [Xanthomonas vesicatoria ATCC 35937]
 gi|325536273|gb|EGD08064.1| RNAse T [Xanthomonas vesicatoria ATCC 35937]
          Length = 213

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 13/185 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D     ++EI  V +            T    L P  G +  P++L++ G
Sbjct: 28  VVVDVETGGFDWNKHALLEIACVPIEMDADGRFFPGETASAHLVPAPGLEIDPKSLEITG 87

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 +        +  Q A  + HNA FD+ F+NA + R+   
Sbjct: 88  IVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 147

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      ++        +  L    +  G+  +    H A+ D+   + ++  +  
Sbjct: 148 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCTIAN 207

Query: 177 GGSQI 181
                
Sbjct: 208 AWPGP 212


>gi|238019461|ref|ZP_04599887.1| hypothetical protein VEIDISOL_01330 [Veillonella dispar ATCC 17748]
 gi|237864160|gb|EEP65450.1| hypothetical protein VEIDISOL_01330 [Veillonella dispar ATCC 17748]
          Length = 327

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 71/205 (34%), Gaps = 25/205 (12%)

Query: 7   MRKIVFDIE--------------T----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           M  IVFD+E              T    TG       II+IGAV+L +       F +F+
Sbjct: 1   MNYIVFDLEWNQPYSNDISFMKRTKMPLTG------EIIQIGAVKLNEKMDIVDHFTMFI 54

Query: 49  CPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            P    +      +L GIT   L     F +    F ++  ++       +    +   N
Sbjct: 55  KPQYLPRMHKHVRELTGITSRELDHGVPFKTAMQYFQNWCGDEYMLLSWGSDDILILREN 114

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             L R+     D       +   +R   S +  +    +   I+  H S H AL D+   
Sbjct: 115 LMLHRMKALSYDQWVDAQMIYSYQRYGTSQQYSVAHAMEDLNISTEHLSAHNALHDAVFT 174

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRF 192
           + +  K+ +    +++     E   
Sbjct: 175 AHICQKLDIPQGILHYDQIRKESSN 199


>gi|170019811|ref|YP_001724765.1| exodeoxyribonuclease X [Escherichia coli ATCC 8739]
 gi|169754739|gb|ACA77438.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli ATCC
           8739]
          Length = 220

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D     +     + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-KPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|57237506|ref|YP_178520.1| DNA polymerase III subunit epsilon [Campylobacter jejuni RM1221]
 gi|57166310|gb|AAW35089.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Campylobacter jejuni RM1221]
          Length = 233

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 6/122 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIE+TG       I+EIGAV++ +  +  R FQ F+    ++      +L GIT E +
Sbjct: 51  IVDIESTGG-VSKGEILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYEMV 106

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ PS + + S+F      +++ ++AHN +FD  FI+  L       L   RI       
Sbjct: 107 ENAPSLTKVLSDF--RLFLKDSIFVAHNVRFDYSFISKALNECGFGILLNRRICTIEFAQ 164

Query: 131 RR 132
             
Sbjct: 165 CC 166


>gi|314985436|gb|EFT29528.1| hypothetical protein HMPREF9594_00564 [Propionibacterium acnes
           HL005PA1]
 gi|328759611|gb|EGF73213.1| hypothetical protein HMPREF9343_02650 [Propionibacterium acnes
           HL099PA1]
          Length = 192

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 37/161 (22%), Gaps = 10/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDE 68
           ++ D ETT LD    RIIEI  +     + T        + P      P A         
Sbjct: 12  VILDTETTDLD---GRIIEISII----DAATGTVLMDQLINPTLLDIPPGAEWAIRRPHT 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L          ++     +  + E      +        + +         +    T  
Sbjct: 65  VLLPVRVRLGATNQSTTH-HTAHGERTTPRHEGVQRHHCRKHKESPGFGPHKAGQ-PTGG 122

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              R    +   L  +    G                L   
Sbjct: 123 RGSRSKVLAPFFLRKVYHVRGHVSKEDIWGKNCHGCWLTRK 163


>gi|127513296|ref|YP_001094493.1| exonuclease, RNase T and DNA polymerase III [Shewanella loihica
           PV-4]
 gi|126638591|gb|ABO24234.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica
           PV-4]
          Length = 226

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 1/72 (1%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             D+E TGL++  D+I+ IG V +       +      +   G       +     T   
Sbjct: 45  AIDLEMTGLNASFDQILSIGVVPIRQGQLILSEAQHKLVQIEGSVGQSATIHGILDTHLD 104

Query: 70  LKDKPSFSSIFS 81
               P  +  + 
Sbjct: 105 AALTPEQAMAWF 116


>gi|333003546|gb|EGK23086.1| exonuclease family protein [Shigella flexneri VA-6]
 gi|333004693|gb|EGK24216.1| exonuclease family protein [Shigella flexneri K-272]
 gi|333018414|gb|EGK37712.1| exonuclease family protein [Shigella flexneri K-227]
          Length = 220

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D         + + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSLLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|318076131|ref|ZP_07983463.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
          Length = 384

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          FD+ETTG D + DRI+    + L        T    L P G +   EA  +HGI 
Sbjct: 11 FDLETTGTDVEQDRIVTAAVIRLDSSGTVAHTRTWLLDP-GVEIPAEATAIHGIP 64


>gi|318060902|ref|ZP_07979623.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
          Length = 239

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          FD+ETTG D + DRI+    + L        T    L P G +   EA  +HGI 
Sbjct: 11 FDLETTGTDVEQDRIVTAAVIRLDSSGTVAHTRTWLLDP-GVEIPAEATAIHGIP 64


>gi|254524060|ref|ZP_05136115.1| ribonuclease T [Stenotrophomonas sp. SKA14]
 gi|219721651|gb|EED40176.1| ribonuclease T [Stenotrophomonas sp. SKA14]
          Length = 194

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 13/184 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G DS+ + ++EI AV +    +      +T    + P  G +  P++L++ G
Sbjct: 11  VVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHVVPAEGLEIDPKSLEVTG 70

Query: 65  ITDEFLKD--------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                          +  Q A  + HNA FD+GF+NA + R    
Sbjct: 71  IILDHPFRLAKEEKAALDHIFVPVRAAMKKYGCQRAILVGHNAHFDLGFVNAAVARTGHK 130

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      ++        +  L       G+       H A+ D+   + ++  +  
Sbjct: 131 RNPFHPFSVFDTVTLAGIAYGQTVLARAATAAGLGWDANEAHSAVYDTEQTARLFCTIAN 190

Query: 177 GGSQ 180
              +
Sbjct: 191 AWPR 194


>gi|148927622|ref|ZP_01811085.1| Exodeoxyribonuclease I [candidate division TM7 genomosp. GTL1]
 gi|147887031|gb|EDK72536.1| Exodeoxyribonuclease I [candidate division TM7 genomosp. GTL1]
          Length = 476

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 7/128 (5%)

Query: 1   MIRKNKMRKIVF--DIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLC-PNGRKNS 56
           M++   M +  F  D+ET+GLD + DRI++       +D       F + +   +    S
Sbjct: 1   MMKD--MAETFFFYDLETSGLDPRRDRIMQFAGQRTTMDLDPIGEPFNILVRLNDDVLPS 58

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSE-FWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           P+A+ + GIT +   ++    + F + F +         +  N               N 
Sbjct: 59  PDAVMVTGITPQKTHEEGIAEAEFIKLFHNQVCTPGTVTVGFNNIRFDDEFIRFALWRNF 118

Query: 116 DPLDPSRI 123
                   
Sbjct: 119 HDPYEWAW 126


>gi|121582521|ref|YP_974053.1| exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42]
 gi|120608579|gb|ABM44318.1| Exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42]
          Length = 302

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 59/176 (33%), Gaps = 10/176 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D ETTGL     D ++E+  V+              + P+     PEA  +HGIT
Sbjct: 131 RTVYMDTETTGLYGGCGDELLELALVDDAGNVL----LDSLVKPDRHTEWPEAQAIHGIT 186

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSRI 123
              + + PS  S+         +     + +NA FD+ F+   ++            +  
Sbjct: 187 PADVMNAPSLESLLPRLLAVIED-AGTLVIYNAGFDLAFLPDAVRPVASNKALCAMHAFS 245

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +       R+     + L       G      S H A  D+     V+  +     
Sbjct: 246 LHAGEWDERRQSYRWHKLGVAACAAG-HRWEGSAHRARADALATRSVWHWLCAQVK 300


>gi|284042646|ref|YP_003392986.1| exonuclease RNase T and DNA polymerase III [Conexibacter woesei
          DSM 14684]
 gi|283946867|gb|ADB49611.1| Exonuclease RNase T and DNA polymerase III [Conexibacter woesei
          DSM 14684]
          Length = 259

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          R   FDIETTG+D ++DRI+   AV L      T       + P G +    A  +HGIT
Sbjct: 3  RLAAFDIETTGIDPQSDRIVT-AAVSLAGDARPTVDH-DWLVDP-GVEIPAGATAVHGIT 59

Query: 67 DEF 69
           + 
Sbjct: 60 TDH 62


>gi|150260590|ref|ZP_01917318.1| oligoribonuclease [Yersinia pestis CA88-4125]
 gi|161484882|ref|NP_667960.2| oligoribonuclease [Yersinia pestis KIM 10]
 gi|161511446|ref|NP_991914.2| oligoribonuclease [Yersinia pestis biovar Microtus str. 91001]
 gi|162419396|ref|YP_001605286.1| oligoribonuclease [Yersinia pestis Angola]
 gi|165926762|ref|ZP_02222594.1| oligoribonuclease [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165936480|ref|ZP_02225048.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011882|ref|ZP_02232780.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213971|ref|ZP_02240006.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167400566|ref|ZP_02306075.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167418918|ref|ZP_02310671.1| oligoribonuclease [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167423542|ref|ZP_02315295.1| oligoribonuclease [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|218927569|ref|YP_002345444.1| oligoribonuclease [Yersinia pestis CO92]
 gi|229358039|ref|YP_653824.2| oligoribonuclease [Yersinia pestis Antiqua]
 gi|229559847|ref|YP_649232.2| oligoribonuclease [Yersinia pestis Nepal516]
 gi|229836625|ref|ZP_04456791.1| oligoribonuclease [Yersinia pestis Pestoides A]
 gi|229840237|ref|ZP_04460396.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842315|ref|ZP_04462470.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. India
          195]
 gi|229903946|ref|ZP_04519059.1| oligoribonuclease [Yersinia pestis Nepal516]
 gi|270489066|ref|ZP_06206140.1| exonuclease [Yersinia pestis KIM D27]
 gi|294502475|ref|YP_003566537.1| oligoribonuclease [Yersinia pestis Z176003]
 gi|20138838|sp|Q8ZIW9|ORN_YERPE RecName: Full=Oligoribonuclease
 gi|115346180|emb|CAL19048.1| oligoribonuclease [Yersinia pestis CO92]
 gi|149289998|gb|EDM40075.1| oligoribonuclease [Yersinia pestis CA88-4125]
 gi|162352211|gb|ABX86159.1| oligoribonuclease [Yersinia pestis Angola]
 gi|165915596|gb|EDR34205.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921385|gb|EDR38609.1| oligoribonuclease [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165989241|gb|EDR41542.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204766|gb|EDR49246.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962912|gb|EDR58933.1| oligoribonuclease [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167049934|gb|EDR61342.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057712|gb|EDR67458.1| oligoribonuclease [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|229679716|gb|EEO75819.1| oligoribonuclease [Yersinia pestis Nepal516]
 gi|229690625|gb|EEO82679.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. India
          195]
 gi|229696603|gb|EEO86650.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706309|gb|EEO92317.1| oligoribonuclease [Yersinia pestis Pestoides A]
 gi|262360505|gb|ACY57226.1| oligoribonuclease [Yersinia pestis D106004]
 gi|262364452|gb|ACY61009.1| oligoribonuclease [Yersinia pestis D182038]
 gi|270337570|gb|EFA48347.1| exonuclease [Yersinia pestis KIM D27]
 gi|294352934|gb|ADE63275.1| oligoribonuclease [Yersinia pestis Z176003]
 gi|320013769|gb|ADV97340.1| oligoribonuclease [Yersinia pestis biovar Medievalis str. Harbin
          35]
          Length = 181

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + +N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MAENQNNLIWIDLEMTGLDPERDRIIEIA 29


>gi|332756741|gb|EGJ87088.1| exonuclease family protein [Shigella flexneri 4343-70]
 gi|333004838|gb|EGK24360.1| exonuclease family protein [Shigella flexneri K-218]
          Length = 220

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D         + + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSLLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|170739960|ref|YP_001768615.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
 gi|168194234|gb|ACA16181.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 186

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 64/178 (35%), Gaps = 8/178 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR +  D ET   + + D    +G   + D     R     + P   + SP  +++HGI 
Sbjct: 1   MRTLAIDFET--ANERRDSACAVGLAWIEDGRVVRRE-ARLIRPPDLRFSPFNIRVHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E + D   F    + F        A  +AHNA FDVG + A L          + +   
Sbjct: 58  PEDVADAKPFGEAMAPFLPEIAG--ALVLAHNASFDVGVLCAALAACGLPRPRFTSLCTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
               R+    +R  L  L +R G        H A  D+   + + +  M      +  
Sbjct: 116 QLARRQWPGEARYRLPILAERLG---IPLRHHDAGEDAFACAQIALAAMREAGAPDLA 170


>gi|66395669|ref|YP_240034.1| ORF013 [Staphylococcus phage 47]
 gi|209363557|ref|YP_002267975.1| hypothetical protein phi2958PVL_gp05 [Staphylococcus phage
           phi2958PVL]
 gi|257428268|ref|ZP_05604666.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|282905892|ref|ZP_06313747.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282919259|ref|ZP_06326994.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           C427]
 gi|284024544|ref|ZP_06378942.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus 132]
 gi|62636093|gb|AAX91204.1| ORF013 [Staphylococcus phage 47]
 gi|208973058|dbj|BAG74374.1| hypothetical protein [Staphylococcus phage phi2958PVL]
 gi|257275109|gb|EEV06596.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|282317069|gb|EFB47443.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           C427]
 gi|282331184|gb|EFB60698.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
          Length = 306

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 66/216 (30%), Gaps = 12/216 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D+ET   + +   I  I  ++  D    +  +   + P     S     +HGI+
Sbjct: 1   MDFVAIDVET--ANEQRSSICSIALLKFQDNKMRDAIY-THINPET-YFSSINTSIHGIS 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E + D P    +      F    N   +AHN  FD+  +    ++ N            
Sbjct: 57  EEDVMDSPKMYQMHEAIIRFL--DNHIIVAHNTSFDMYALCDSFKKYNLPLPSNQYFCTY 114

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                  +  S    +         I +   H A  D+ + + +   ++           
Sbjct: 115 RLSKDLYNLPSYRLQD---LAEHFDIKNEEYHNAFYDAKVCAKIAYNILKDQDA---NLN 168

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
              +    +      N  + K        +  EEL+
Sbjct: 169 DLVENQNFKYGVFGQNGFIKKSANKKIELVYNEELN 204


>gi|187734182|ref|YP_001880647.1| exodeoxyribonuclease X [Shigella boydii CDC 3083-94]
 gi|187431174|gb|ACD10448.1| exodeoxyribonuclease X [Shigella boydii CDC 3083-94]
          Length = 220

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|116494067|ref|YP_805801.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei ATCC 334]
 gi|191637384|ref|YP_001986550.1| DNA polymerase III, alpha subunit [Lactobacillus casei BL23]
 gi|227533296|ref|ZP_03963345.1| DNA polymerase III, epsilon subunit like 3'-5' exonuclease
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|116104217|gb|ABJ69359.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei ATCC 334]
 gi|190711686|emb|CAQ65692.1| DNA polymerase III, alpha subunit [Lactobacillus casei BL23]
 gi|227189092|gb|EEI69159.1| DNA polymerase III, epsilon subunit like 3'-5' exonuclease
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|327381428|gb|AEA52904.1| DNA polymerase III alpha subunit [Lactobacillus casei LC2W]
 gi|327384594|gb|AEA56068.1| DNA polymerase III alpha subunit [Lactobacillus casei BD-II]
          Length = 172

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 47/129 (36%), Gaps = 5/129 (3%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+  ++ D E    +S ++R I+I AV + D       F  F+    + +    ++   +
Sbjct: 1   MKEYVIMDTE---FNSTSNRAIQISAVRIRDGLHIADQFNRFIPSPDKFDQLHIIRTSNM 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                   PS      ++  +        +  + + D G I    ++ +       + ID
Sbjct: 58  RYSDYLALPSLQQTVRDYVAWMRTTIDI-VGWSIEGDAGRIRETFKKGSHGIPKNWKFID 116

Query: 126 TLSIARRKH 134
              I  +++
Sbjct: 117 IADIVEKRY 125


>gi|323174733|gb|EFZ60349.1| exonuclease family protein [Escherichia coli LT-68]
          Length = 220

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYRTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|224584057|ref|YP_002637855.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224468584|gb|ACN46414.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 257

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 67/177 (37%), Gaps = 13/177 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQPEALAFNG 79

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I             +   +   +  +         A  +AHNA FD  F+ A  +R +  
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                  +   + A       +  L+  C   G+       H AL D+   + ++ +
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCE 196


>gi|82543665|ref|YP_407612.1| exodeoxyribonuclease X [Shigella boydii Sb227]
 gi|81245076|gb|ABB65784.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|320177515|gb|EFW52509.1| Exodeoxyribonuclease X [Shigella dysenteriae CDC 74-1112]
 gi|320183242|gb|EFW58099.1| Exodeoxyribonuclease X [Shigella flexneri CDC 796-83]
 gi|332096685|gb|EGJ01676.1| exonuclease family protein [Shigella boydii 3594-74]
          Length = 220

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|307172626|gb|EFN63985.1| hypothetical protein EAG_09598 [Camponotus floridanus]
          Length = 292

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 7/44 (15%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50
          M  I+FD+ETTG    N  II+I A +  +     + F V++ P
Sbjct: 1  MTAIIFDLETTGFGP-NAEIIQIAA-KYHN-----QEFNVYIFP 37


>gi|300938801|ref|ZP_07153512.1| exonuclease [Escherichia coli MS 21-1]
 gi|300456266|gb|EFK19759.1| exonuclease [Escherichia coli MS 21-1]
          Length = 220

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDIIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|16129797|ref|NP_416358.1| DNA exonuclease X [Escherichia coli str. K-12 substr. MG1655]
 gi|74311833|ref|YP_310252.1| exodeoxyribonuclease X [Shigella sonnei Ss046]
 gi|82776429|ref|YP_402778.1| exodeoxyribonuclease X [Shigella dysenteriae Sd197]
 gi|89108684|ref|AP_002464.1| DNA exonuclease X [Escherichia coli str. K-12 substr. W3110]
 gi|91211067|ref|YP_541053.1| exodeoxyribonuclease X [Escherichia coli UTI89]
 gi|110641962|ref|YP_669692.1| exodeoxyribonuclease X [Escherichia coli 536]
 gi|117623997|ref|YP_852910.1| exodeoxyribonuclease X [Escherichia coli APEC O1]
 gi|157159299|ref|YP_001463146.1| exodeoxyribonuclease X [Escherichia coli E24377A]
 gi|161486210|ref|NP_754148.2| exodeoxyribonuclease X [Escherichia coli CFT073]
 gi|170081500|ref|YP_001730820.1| DNA exonuclease X [Escherichia coli str. K-12 substr. DH10B]
 gi|170681411|ref|YP_001743401.1| exodeoxyribonuclease X [Escherichia coli SMS-3-5]
 gi|188495324|ref|ZP_03002594.1| exodeoxyribonuclease X [Escherichia coli 53638]
 gi|191168492|ref|ZP_03030279.1| exodeoxyribonuclease X [Escherichia coli B7A]
 gi|191172968|ref|ZP_03034502.1| exodeoxyribonuclease X [Escherichia coli F11]
 gi|193066046|ref|ZP_03047103.1| exodeoxyribonuclease X [Escherichia coli E22]
 gi|194429668|ref|ZP_03062186.1| exodeoxyribonuclease X [Escherichia coli B171]
 gi|194439062|ref|ZP_03071145.1| exodeoxyribonuclease X [Escherichia coli 101-1]
 gi|209919210|ref|YP_002293294.1| exodeoxyribonuclease X [Escherichia coli SE11]
 gi|218554418|ref|YP_002387331.1| exodeoxyribonuclease X [Escherichia coli IAI1]
 gi|218558708|ref|YP_002391621.1| exodeoxyribonuclease X [Escherichia coli S88]
 gi|218689782|ref|YP_002397994.1| exodeoxyribonuclease X [Escherichia coli ED1a]
 gi|218695410|ref|YP_002403077.1| exodeoxyribonuclease X [Escherichia coli 55989]
 gi|218699585|ref|YP_002407214.1| exodeoxyribonuclease X [Escherichia coli IAI39]
 gi|218705343|ref|YP_002412862.1| exodeoxyribonuclease X [Escherichia coli UMN026]
 gi|227885729|ref|ZP_04003534.1| exodeoxyribonuclease X [Escherichia coli 83972]
 gi|237705796|ref|ZP_04536277.1| exodeoxyribonuclease X [Escherichia sp. 3_2_53FAA]
 gi|238901059|ref|YP_002926855.1| DNA exonuclease X [Escherichia coli BW2952]
 gi|256017967|ref|ZP_05431832.1| exodeoxyribonuclease X [Shigella sp. D9]
 gi|256022492|ref|ZP_05436357.1| exodeoxyribonuclease X [Escherichia sp. 4_1_40B]
 gi|260844189|ref|YP_003221967.1| DNA exonuclease X [Escherichia coli O103:H2 str. 12009]
 gi|260855770|ref|YP_003229661.1| DNA exonuclease X [Escherichia coli O26:H11 str. 11368]
 gi|260868365|ref|YP_003234767.1| DNA exonuclease X [Escherichia coli O111:H- str. 11128]
 gi|291283026|ref|YP_003499844.1| Exodeoxyribonuclease 10 [Escherichia coli O55:H7 str. CB9615]
 gi|293405339|ref|ZP_06649331.1| exodeoxyribonuclease X [Escherichia coli FVEC1412]
 gi|293410154|ref|ZP_06653730.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293415159|ref|ZP_06657802.1| exodeoxyribonuclease X [Escherichia coli B185]
 gi|293446216|ref|ZP_06662638.1| exodeoxyribonuclease X [Escherichia coli B088]
 gi|298380980|ref|ZP_06990579.1| exodeoxyribonuclease X [Escherichia coli FVEC1302]
 gi|300816266|ref|ZP_07096488.1| exonuclease [Escherichia coli MS 107-1]
 gi|300824216|ref|ZP_07104334.1| exonuclease [Escherichia coli MS 119-7]
 gi|300899088|ref|ZP_07117373.1| exonuclease [Escherichia coli MS 198-1]
 gi|300917583|ref|ZP_07134236.1| exonuclease [Escherichia coli MS 115-1]
 gi|300924914|ref|ZP_07140845.1| exonuclease [Escherichia coli MS 182-1]
 gi|300928872|ref|ZP_07144378.1| exonuclease [Escherichia coli MS 187-1]
 gi|300951460|ref|ZP_07165297.1| exonuclease [Escherichia coli MS 116-1]
 gi|300956649|ref|ZP_07168925.1| exonuclease [Escherichia coli MS 175-1]
 gi|300982052|ref|ZP_07175871.1| exonuclease [Escherichia coli MS 200-1]
 gi|300994204|ref|ZP_07180761.1| exonuclease [Escherichia coli MS 45-1]
 gi|301025418|ref|ZP_07188970.1| exonuclease [Escherichia coli MS 196-1]
 gi|301050807|ref|ZP_07197661.1| exonuclease [Escherichia coli MS 185-1]
 gi|301327607|ref|ZP_07220824.1| exonuclease [Escherichia coli MS 78-1]
 gi|306814328|ref|ZP_07448494.1| exodeoxyribonuclease X [Escherichia coli NC101]
 gi|307138504|ref|ZP_07497860.1| exodeoxyribonuclease X [Escherichia coli H736]
 gi|307314078|ref|ZP_07593690.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W]
 gi|309789238|ref|ZP_07683831.1| exonuclease family protein [Shigella dysenteriae 1617]
 gi|309794224|ref|ZP_07688648.1| exonuclease [Escherichia coli MS 145-7]
 gi|312969882|ref|ZP_07784065.1| exonuclease family protein [Escherichia coli 1827-70]
 gi|331642455|ref|ZP_08343590.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H736]
 gi|331653250|ref|ZP_08354255.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M718]
 gi|331668536|ref|ZP_08369384.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA271]
 gi|331673376|ref|ZP_08374144.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA280]
 gi|331677723|ref|ZP_08378398.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H591]
 gi|331683348|ref|ZP_08383949.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H299]
 gi|332279002|ref|ZP_08391415.1| exodeoxyribonuclease X [Shigella sp. D9]
 gi|84027958|sp|P0AEK1|EXOX_ECOL6 RecName: Full=Exodeoxyribonuclease 10; AltName:
           Full=Exodeoxyribonuclease X; Short=Exo X;
           Short=Exonuclease X
 gi|84027959|sp|P0AEK0|EXOX_ECOLI RecName: Full=Exodeoxyribonuclease 10; AltName:
           Full=Exodeoxyribonuclease X; Short=Exo X;
           Short=Exonuclease X
 gi|6166471|gb|AAF04847.1|AF194116_1 exonuclease X [Escherichia coli]
 gi|1788149|gb|AAC74914.1| DNA exonuclease X [Escherichia coli str. K-12 substr. MG1655]
 gi|73855310|gb|AAZ88017.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81240577|gb|ABB61287.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|85675148|dbj|BAE76547.1| DNA exonuclease X [Escherichia coli str. K12 substr. W3110]
 gi|91072641|gb|ABE07522.1| exodeoxyribonuclease X [Escherichia coli UTI89]
 gi|110343554|gb|ABG69791.1| exodeoxyribonuclease X [Escherichia coli 536]
 gi|115513121|gb|ABJ01196.1| exodeoxyribonuclease X [Escherichia coli APEC O1]
 gi|157081329|gb|ABV21037.1| exodeoxyribonuclease X [Escherichia coli E24377A]
 gi|169889335|gb|ACB03042.1| DNA exonuclease X [Escherichia coli str. K-12 substr. DH10B]
 gi|170519129|gb|ACB17307.1| exodeoxyribonuclease X [Escherichia coli SMS-3-5]
 gi|188490523|gb|EDU65626.1| exodeoxyribonuclease X [Escherichia coli 53638]
 gi|190901445|gb|EDV61207.1| exodeoxyribonuclease X [Escherichia coli B7A]
 gi|190906679|gb|EDV66284.1| exodeoxyribonuclease X [Escherichia coli F11]
 gi|192926283|gb|EDV80920.1| exodeoxyribonuclease X [Escherichia coli E22]
 gi|194412310|gb|EDX28614.1| exodeoxyribonuclease X [Escherichia coli B171]
 gi|194422021|gb|EDX38025.1| exodeoxyribonuclease X [Escherichia coli 101-1]
 gi|209767638|gb|ACI82131.1| exonuclease X [Escherichia coli]
 gi|209767644|gb|ACI82134.1| exonuclease X [Escherichia coli]
 gi|209912469|dbj|BAG77543.1| DNA exonuclease X [Escherichia coli SE11]
 gi|218352142|emb|CAU97881.1| DNA exonuclease X [Escherichia coli 55989]
 gi|218361186|emb|CAQ98770.1| DNA exonuclease X [Escherichia coli IAI1]
 gi|218365477|emb|CAR03204.1| DNA exonuclease X [Escherichia coli S88]
 gi|218369571|emb|CAR17340.1| DNA exonuclease X [Escherichia coli IAI39]
 gi|218427346|emb|CAR08241.2| DNA exonuclease X [Escherichia coli ED1a]
 gi|218432440|emb|CAR13333.1| DNA exonuclease X [Escherichia coli UMN026]
 gi|222033593|emb|CAP76334.1| exodeoxyribonuclease 10 [Escherichia coli LF82]
 gi|226900553|gb|EEH86812.1| exodeoxyribonuclease X [Escherichia sp. 3_2_53FAA]
 gi|227837302|gb|EEJ47768.1| exodeoxyribonuclease X [Escherichia coli 83972]
 gi|238860815|gb|ACR62813.1| DNA exonuclease X [Escherichia coli BW2952]
 gi|257754419|dbj|BAI25921.1| DNA exonuclease X [Escherichia coli O26:H11 str. 11368]
 gi|257759336|dbj|BAI30833.1| DNA exonuclease X [Escherichia coli O103:H2 str. 12009]
 gi|257764721|dbj|BAI36216.1| DNA exonuclease X [Escherichia coli O111:H- str. 11128]
 gi|260449035|gb|ACX39457.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli DH1]
 gi|281178912|dbj|BAI55242.1| DNA exonuclease X [Escherichia coli SE15]
 gi|284921762|emb|CBG34835.1| exodeoxyribonuclease X [Escherichia coli 042]
 gi|290762899|gb|ADD56860.1| Exodeoxyribonuclease 10 [Escherichia coli O55:H7 str. CB9615]
 gi|291323046|gb|EFE62474.1| exodeoxyribonuclease X [Escherichia coli B088]
 gi|291427547|gb|EFF00574.1| exodeoxyribonuclease X [Escherichia coli FVEC1412]
 gi|291432807|gb|EFF05786.1| exodeoxyribonuclease X [Escherichia coli B185]
 gi|291470622|gb|EFF13106.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294490108|gb|ADE88864.1| exodeoxyribonuclease X [Escherichia coli IHE3034]
 gi|298278422|gb|EFI19936.1| exodeoxyribonuclease X [Escherichia coli FVEC1302]
 gi|299880094|gb|EFI88305.1| exonuclease [Escherichia coli MS 196-1]
 gi|300297496|gb|EFJ53881.1| exonuclease [Escherichia coli MS 185-1]
 gi|300307354|gb|EFJ61874.1| exonuclease [Escherichia coli MS 200-1]
 gi|300316527|gb|EFJ66311.1| exonuclease [Escherichia coli MS 175-1]
 gi|300357297|gb|EFJ73167.1| exonuclease [Escherichia coli MS 198-1]
 gi|300406332|gb|EFJ89870.1| exonuclease [Escherichia coli MS 45-1]
 gi|300415183|gb|EFJ98493.1| exonuclease [Escherichia coli MS 115-1]
 gi|300418932|gb|EFK02243.1| exonuclease [Escherichia coli MS 182-1]
 gi|300449289|gb|EFK12909.1| exonuclease [Escherichia coli MS 116-1]
 gi|300463162|gb|EFK26655.1| exonuclease [Escherichia coli MS 187-1]
 gi|300523287|gb|EFK44356.1| exonuclease [Escherichia coli MS 119-7]
 gi|300530956|gb|EFK52018.1| exonuclease [Escherichia coli MS 107-1]
 gi|300845856|gb|EFK73616.1| exonuclease [Escherichia coli MS 78-1]
 gi|305852487|gb|EFM52938.1| exodeoxyribonuclease X [Escherichia coli NC101]
 gi|306906216|gb|EFN36733.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W]
 gi|307553862|gb|ADN46637.1| exodeoxyribonuclease X [Escherichia coli ABU 83972]
 gi|307626675|gb|ADN70979.1| exodeoxyribonuclease X [Escherichia coli UM146]
 gi|308122129|gb|EFO59391.1| exonuclease [Escherichia coli MS 145-7]
 gi|308922992|gb|EFP68506.1| exonuclease family protein [Shigella dysenteriae 1617]
 gi|310338167|gb|EFQ03256.1| exonuclease family protein [Escherichia coli 1827-70]
 gi|312946443|gb|ADR27270.1| exodeoxyribonuclease X [Escherichia coli O83:H1 str. NRG 857C]
 gi|315061147|gb|ADT75474.1| DNA exonuclease X [Escherichia coli W]
 gi|315136487|dbj|BAJ43646.1| exodeoxyribonuclease 10 [Escherichia coli DH1]
 gi|315286537|gb|EFU45972.1| exonuclease [Escherichia coli MS 110-3]
 gi|315290373|gb|EFU49749.1| exonuclease [Escherichia coli MS 153-1]
 gi|320194441|gb|EFW69072.1| Exodeoxyribonuclease X [Escherichia coli WV_060327]
 gi|320198024|gb|EFW72632.1| Exodeoxyribonuclease X [Escherichia coli EC4100B]
 gi|320641696|gb|EFX11084.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. G5101]
 gi|320647056|gb|EFX15889.1| exodeoxyribonuclease X [Escherichia coli O157:H- str. 493-89]
 gi|320652339|gb|EFX20637.1| exodeoxyribonuclease X [Escherichia coli O157:H- str. H 2687]
 gi|320657940|gb|EFX25702.1| exodeoxyribonuclease X [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320658513|gb|EFX26207.1| exodeoxyribonuclease X [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668411|gb|EFX35238.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. LSU-61]
 gi|323152600|gb|EFZ38877.1| exonuclease family protein [Escherichia coli EPECa14]
 gi|323158672|gb|EFZ44686.1| exonuclease family protein [Escherichia coli E128010]
 gi|323166600|gb|EFZ52360.1| exonuclease family protein [Shigella sonnei 53G]
 gi|323180624|gb|EFZ66169.1| exonuclease family protein [Escherichia coli 1180]
 gi|323186407|gb|EFZ71755.1| exonuclease family protein [Escherichia coli 1357]
 gi|323378276|gb|ADX50544.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli KO11]
 gi|323940489|gb|EGB36680.1| exonuclease [Escherichia coli E482]
 gi|323948271|gb|EGB44259.1| exonuclease [Escherichia coli H120]
 gi|323952346|gb|EGB48219.1| exonuclease [Escherichia coli H252]
 gi|323956475|gb|EGB52217.1| exonuclease [Escherichia coli H263]
 gi|323968612|gb|EGB64018.1| exonuclease [Escherichia coli M863]
 gi|323972649|gb|EGB67852.1| exonuclease [Escherichia coli TA007]
 gi|323977972|gb|EGB73058.1| exonuclease [Escherichia coli TW10509]
 gi|324007199|gb|EGB76418.1| exonuclease [Escherichia coli MS 57-2]
 gi|324012816|gb|EGB82035.1| exonuclease [Escherichia coli MS 60-1]
 gi|324018034|gb|EGB87253.1| exonuclease [Escherichia coli MS 117-3]
 gi|324118904|gb|EGC12793.1| exonuclease [Escherichia coli E1167]
 gi|327252967|gb|EGE64621.1| exonuclease family protein [Escherichia coli STEC_7v]
 gi|331039253|gb|EGI11473.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H736]
 gi|331049348|gb|EGI21420.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M718]
 gi|331063730|gb|EGI35641.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA271]
 gi|331069574|gb|EGI40961.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA280]
 gi|331074183|gb|EGI45503.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H591]
 gi|331079563|gb|EGI50760.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H299]
 gi|332101354|gb|EGJ04700.1| exodeoxyribonuclease X [Shigella sp. D9]
 gi|332343569|gb|AEE56903.1| exonuclease [Escherichia coli UMNK88]
          Length = 220

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|317049763|ref|YP_004117411.1| exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
 gi|316951380|gb|ADU70855.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
          Length = 182

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M   N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MTAGNENNLIWIDLEMTGLDPERDRIIEIA 30


>gi|157414745|ref|YP_001482001.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157385709|gb|ABV52024.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747384|gb|ADN90654.1| DNA polymerase III, epsilon subunit [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931109|gb|EFV10083.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni 327]
          Length = 253

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 6/122 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIE+TG       I+EIGAV++ +  +  R FQ F+    ++      +L GIT E +
Sbjct: 74  IVDIESTGG-VSKGEILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYEMV 129

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ PS + + S+F      +++ ++AHN +FD  FI+  L       L   RI       
Sbjct: 130 ENAPSLAKVLSDF--RLFLKDSIFVAHNVRFDYSFISKALNECGFGILLNRRICTIEFAQ 187

Query: 131 RR 132
             
Sbjct: 188 CC 189


>gi|152998334|ref|YP_001343169.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1]
 gi|150839258|gb|ABR73234.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp.
          MWYL1]
          Length = 236

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK 39
            D+ETTGLD   D II +G + L     
Sbjct: 53 ALDLETTGLDPSQDEIISLGLIPLNHKII 81


>gi|51594770|ref|YP_068961.1| oligoribonuclease [Yersinia pseudotuberculosis IP 32953]
 gi|153949964|ref|YP_001402615.1| oligoribonuclease [Yersinia pseudotuberculosis IP 31758]
 gi|229597226|ref|YP_001722527.2| oligoribonuclease [Yersinia pseudotuberculosis YPIII]
 gi|229597243|ref|YP_001870889.2| oligoribonuclease [Yersinia pseudotuberculosis PB1/+]
 gi|59798016|sp|Q66FC2|ORN_YERPS RecName: Full=Oligoribonuclease
 gi|166918641|sp|A7FMY7|ORN_YERP3 RecName: Full=Oligoribonuclease
 gi|51588052|emb|CAH19658.1| possible oligoribonuclease [Yersinia pseudotuberculosis IP 32953]
 gi|152961459|gb|ABS48920.1| oligoribonuclease [Yersinia pseudotuberculosis IP 31758]
          Length = 181

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + +N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MAENQNNLIWIDLEMTGLDPERDRIIEIA 29


>gi|332076082|gb|EGI86548.1| exonuclease family protein [Streptococcus pneumoniae GA41301]
          Length = 140

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++    R +V D+E T   SK  +II++G V + D       +   + P+         +
Sbjct: 1   MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
           L G+TD+ L   P FS +  + +D   +    ++AHN +FD  
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDAN 98


>gi|323186850|gb|EFZ72169.1| exonuclease family protein [Escherichia coli RN587/1]
          Length = 220

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|308177924|ref|YP_003917330.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis
           Re117]
 gi|307745387|emb|CBT76359.1| putative DNA polymerase III subunit epsilon [Arthrobacter
           arilaitensis Re117]
          Length = 227

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 2/213 (0%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +K   I FD+ETTG+D+   RI+    V L          +  + P        A 
Sbjct: 1   MTEWHKGLAIGFDLETTGVDTNTARIVTASVVLLDAEGNVVNNREWLVDPGVEIPEAAAA 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFN--EQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                T++   +         E  +      + A  +A NA +D   + +E  R + +P 
Sbjct: 61  VHGISTEKARAEGAPAKQSVEEILNLLKFASEQAPIVAFNASYDFSVLYSEAVRYDLEPF 120

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            P  +ID   I ++     +             +   + H +L D+    +V  ++    
Sbjct: 121 FPGNVIDPFIIDKQVDRFRKGKRTLAAACEFYGVVLENAHTSLADAVACVEVARQLGERY 180

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
            Q+               K+   +     R   
Sbjct: 181 PQLQVDPMVLHGWQIGWAKEQAESFQAYLRKTK 213


>gi|212211731|ref|YP_002302667.1| ribonuclease T [Coxiella burnetii CbuG_Q212]
 gi|212010141|gb|ACJ17522.1| ribonuclease T [Coxiella burnetii CbuG_Q212]
          Length = 221

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 63/181 (34%), Gaps = 13/181 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIET GL+   + ++EI AV +    +        F   + P  G    P +L++  
Sbjct: 21  VVVDIETGGLEPLKNPLLEIAAVLVEVNKEGQLCQGELFACHVLPFEGAALDPASLEITR 80

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                    +   +  +    + A  + HNA FD+ FI A ++R    
Sbjct: 81  IDPYHPFRFAVDEKKALQDLFAFVEKAVNVAQCRRAVLVGHNAHFDLTFIQAAMKRCKLK 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L    +   +    +  H A+ D+   ++++ K+  
Sbjct: 141 KSPFHAFTCFDTATLAAIVFGKTVLAKALRAANLPFDKKEAHSAIYDAKCAAELFCKITN 200

Query: 177 G 177
            
Sbjct: 201 Q 201


>gi|125624796|ref|YP_001033279.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124493604|emb|CAL98589.1| Probable ATP-dependent helicase dinG homolog [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300071596|gb|ADJ60996.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 791

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 21/225 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E T   S  ++II+IG   +        T+   + P+         +L G++D
Sbjct: 3   RYAVVDLEATDAHSSENKIIQIGIALVEGGKIV-ETYSTEVNPHEPLLP-RISELTGLSD 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + LK  P FS + SE      +  + ++AHNA+FD G +         +  +  R+    
Sbjct: 61  KQLKSAPDFSEVASEVRKLLTD--SVFVAHNARFDYGLLEKSFLNAGLEFNEMLRVDTVD 118

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------------- 172
                     +  L +L ++  +   H   H A+ D++  +++ I               
Sbjct: 119 LARVFYPTFEKYGLEALSEKLDLAHDHP--HAAVSDAYATAELLIRIEEKIQKLPRSVLE 176

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
           +++     + F  K+       + K       ++        + +
Sbjct: 177 ELLRHSDNLLFESKSFLQEQLDKTKIRPAAFKVVHNIATRKFKSS 221


>gi|29654993|ref|NP_820685.1| ribonuclease T [Coxiella burnetii RSA 493]
 gi|153207536|ref|ZP_01946219.1| ribonuclease T [Coxiella burnetii 'MSU Goat Q177']
 gi|154706868|ref|YP_001423724.1| ribonuclease T [Coxiella burnetii Dugway 5J108-111]
 gi|165918353|ref|ZP_02218439.1| ribonuclease T [Coxiella burnetii RSA 334]
 gi|212217974|ref|YP_002304761.1| ribonuclease T [Coxiella burnetii CbuK_Q154]
 gi|29542262|gb|AAO91199.1| ribonuclease T [Coxiella burnetii RSA 493]
 gi|120576504|gb|EAX33128.1| ribonuclease T [Coxiella burnetii 'MSU Goat Q177']
 gi|154356154|gb|ABS77616.1| ribonuclease T [Coxiella burnetii Dugway 5J108-111]
 gi|165918003|gb|EDR36607.1| ribonuclease T [Coxiella burnetii RSA 334]
 gi|212012236|gb|ACJ19616.1| ribonuclease T [Coxiella burnetii CbuK_Q154]
          Length = 224

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 63/181 (34%), Gaps = 13/181 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIET GL+   + ++EI AV +    +        F   + P  G    P +L++  
Sbjct: 21  VVVDIETGGLEPLKNPLLEIAAVLVEVNKEGQLCQGELFACHVLPFEGAALDPASLEITR 80

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                    +   +  +    + A  + HNA FD+ FI A ++R    
Sbjct: 81  IDPYHPFRFAVDEKKALQDLFAFVEKAVNVAQCRRAVLVGHNAHFDLTFIQAAMKRCKLK 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L    +   +    +  H A+ D+   ++++ K+  
Sbjct: 141 KSPFHAFTCFDTATLAAIVFGKTVLAKALRAANLPFDKKEAHSAIYDAKCAAELFCKITN 200

Query: 177 G 177
            
Sbjct: 201 Q 201


>gi|116512711|ref|YP_811618.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108365|gb|ABJ73505.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11]
          Length = 791

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 21/225 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E T   S  ++II+IG   +        T+   + P+         +L G++D
Sbjct: 3   RYAVVDLEATDAHSSENKIIQIGIALVEGGKIV-ETYSTEVNPHEPLLP-RISELTGLSD 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + LK  P FS + SE      +  + ++AHNA+FD G +         +  +  R+    
Sbjct: 61  KQLKSAPDFSEVASEVRKLLTD--SVFVAHNARFDYGLLEKSFLNAGLEFNEMLRVDTVD 118

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------------- 172
                     +  L +L ++  +   H   H A+ D++  +++ I               
Sbjct: 119 LARVFYPTFEKYGLEALSEKLDLAHDHP--HAAVSDAYATAELLIRIEEKIQKLPRSVLE 176

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
           +++     + F  K+       + K       ++        + +
Sbjct: 177 ELLRHSDNLLFESKSFLQEQLDKTKIRPAAFKVVHNIATRKFKSS 221


>gi|322389907|ref|ZP_08063447.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           parasanguinis ATCC 903]
 gi|321143343|gb|EFX38781.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           parasanguinis ATCC 903]
          Length = 836

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 83/187 (44%), Gaps = 13/187 (6%)

Query: 1   MIRKNKMRKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R+ + +  + D+E T  G ++K   II++G V + D     ++++  + P+ R     
Sbjct: 20  MTRQKR-KYAIVDLEATSAGSNAK---IIQVGIVIIEDGR-IRQSYETDVNPHER-LDEH 73

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             +L G+TD  LK  P F+ +  E ++   +  A ++AHN KFD   +        +   
Sbjct: 74  IKQLTGLTDARLKKAPEFAQVAKEIFELIED--AVFVAHNVKFDANLLA--EALFWEGFE 129

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +  IDT+ +++  +P+             + I     H AL D+   + + +K+    
Sbjct: 130 LTTPRIDTVELSQIFYPTLERYNL-GALAAELEIELHHAHSALADAMATAQLLLKLREKI 188

Query: 179 SQINFGF 185
           + +  G 
Sbjct: 189 ASLPRGL 195


>gi|156392522|ref|XP_001636097.1| predicted protein [Nematostella vectensis]
 gi|156223197|gb|EDO44034.1| predicted protein [Nematostella vectensis]
          Length = 461

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLHGI 65
            ++FD ETTGLD+ ND II++        S+        ++ P GR    EA   HGI
Sbjct: 156 FVMFDTETTGLDTSNDVIIQLACA-----SENGDPLHSRYMFPGGRSIGSEATNAHGI 208


>gi|238796040|ref|ZP_04639551.1| Oligoribonuclease [Yersinia mollaretii ATCC 43969]
 gi|238719985|gb|EEQ11790.1| Oligoribonuclease [Yersinia mollaretii ATCC 43969]
          Length = 181

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + +N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MAENQNNLIWIDLEMTGLDPERDRIIEIA 29


>gi|330981566|gb|EGH79669.1| ribonuclease T [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 193

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 13/185 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGI 65
           V D+ET G +S  D ++EI AV +      +     T+   + P  G      AL+  GI
Sbjct: 2   VVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTGI 61

Query: 66  TDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             +                     +       + A  + HNA FD+GF+NA + R++   
Sbjct: 62  KLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMKR 121

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                     +         +  L   C+  GI    R  H A  D+   ++++  ++  
Sbjct: 122 NPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVNR 181

Query: 178 GSQIN 182
             ++ 
Sbjct: 182 WKEMG 186


>gi|126330776|ref|XP_001373310.1| PREDICTED: similar to Three prime histone mRNA exonuclease 1
           [Monodelphis domestica]
          Length = 432

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 16/199 (8%)

Query: 11  VFDIETT---GLDSK-NDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           V D E T   G   +    IIE   V L  ++ +   TFQ ++ P      S   + L G
Sbjct: 215 VIDFEATCEEGNPPEFTHEIIEFPIVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTG 274

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +     ++   +              + +    +       +    
Sbjct: 275 ITQDMVDRAATFPQVLRNVVEWMKLKELGTTYKYSILTDGSWDMSKFLNIQCQISRLRYP 334

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P ++  L  + ++ G++   R  H  L DS  ++ + ++M+
Sbjct: 335 SFAKKWINIRKSYGNFYKVPRNQTKLTIMLEKLGMSYDGRP-HSGLDDSKNIARIAVRML 393

Query: 176 VGGSQINFGFKTNEDRFFK 194
             G ++    K +  +   
Sbjct: 394 RDGCELRVNEKMHGGQLTS 412


>gi|283785581|ref|YP_003365446.1| exodeoxyribonuclease X [Citrobacter rodentium ICC168]
 gi|282949035|emb|CBG88638.1| exodeoxyribonuclease X [Citrobacter rodentium ICC168]
          Length = 220

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVVDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDIIPHYY-----GSEWYVAHNASFDSRVLPEMPGEWICT-------MKLSRRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T +    H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKSRKLNVQTPAGLHHHRALYDCYITAALLIDIMNT 153


>gi|225021962|ref|ZP_03711154.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945248|gb|EEG26457.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 456

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 9/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN--GRKNSPEALKLHGIT 66
            +  D+ET   ++    I +IG V + D  + +   +    P           +++HGIT
Sbjct: 113 FVGVDVET--ANADWGSICQIGVVRVTDGMQVDSH-EWLCQPPAGIDHFDEGNIRIHGIT 169

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P F+++F E   +  +     +AHNA+FD+   +                   
Sbjct: 170 PDMVTDAPDFATVFPEVVAYVAD--QVLVAHNAQFDLTAFSRACHATGTPVPHWKFACSL 227

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            +    K   + + L  + +  G+     + H A+ D+   + +++++ +          
Sbjct: 228 AASRAAKLGITSHRLPVVAQHLGVE--LDNHHDAVADARACAGIFVQLALRAHATGDIET 285

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                 F         I  +  + P  T  
Sbjct: 286 VFTTLGFSLGDLNTERIYPVLSNPPTVTVA 315


>gi|221234528|ref|YP_002516964.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus
           NA1000]
 gi|220963700|gb|ACL95056.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus
           NA1000]
          Length = 209

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 62/208 (29%), Gaps = 7/208 (3%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             +M+ I  D ET     +      IG   + D  +  R    ++ P G + +   +  H
Sbjct: 5   CRRMKVIAIDFET--ASEQRASPCSIGLAWIEDG-EVARVEHHYIRPPGNRFAAFNMAFH 61

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI  E + D   +  +            A  +AHNA FD+  I    +  +        +
Sbjct: 62  GIRPEHVADADEWPDVLERIRPELEG--ALVLAHNASFDISVIRRTCEHYDVPAPGFDYL 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS--HLLSDVYIKMMVGGSQI 181
                          + LN +C   G+  +H              L+   +  +     +
Sbjct: 120 CTVQVARSVWPELPSHKLNVVCGHLGVDFAHHDAAADAYACGRVALAATGLNALSDIRAL 179

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD 209
                    R   +  +     +  +R 
Sbjct: 180 PQRLGMTPGRLDPDSYRPSRIAAAPRRR 207


>gi|153870628|ref|ZP_01999989.1| ribonuclease T [Beggiatoa sp. PS]
 gi|152072905|gb|EDN70010.1| ribonuclease T [Beggiatoa sp. PS]
          Length = 212

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34
          +V D+ET G + + D ++EI AV L
Sbjct: 19 VVVDVETAGFNPERDALLEIAAVIL 43


>gi|83645626|ref|YP_434061.1| putative exonuclease [Hahella chejuensis KCTC 2396]
 gi|83633669|gb|ABC29636.1| putative exonuclease [Hahella chejuensis KCTC 2396]
          Length = 176

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 62/181 (34%), Gaps = 14/181 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ETT LD     ++EI    + +   T +     + P G   S  A  +H I+
Sbjct: 1   MDPLFLDTETTNLD-DTAEVVEIA---VTNRHGT-KLLNTLVKPQG-PMSAAAQNVHQIS 54

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  LK  PS+   +   +    +     I  NA FDV  +          P+  + +   
Sbjct: 55  ELELKGAPSWPITYPRVYKLLYK--RPVIIFNADFDVRILRQTCNAWALPPIPFTPLCAM 112

Query: 127 LSIARRKHPS------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              A                     ++ G   +  S H A  D+ + S++   M  G   
Sbjct: 113 RLYAEFHGQWSEKGQFKYQSQARALEQIGHPAAATSLHRAAYDAQMTSEIIYTMATGIKP 172

Query: 181 I 181
           +
Sbjct: 173 L 173


>gi|29346841|ref|NP_810344.1| putative DNA polymerase III epsilon chain [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298386512|ref|ZP_06996068.1| exonuclease [Bacteroides sp. 1_1_14]
 gi|29338738|gb|AAO76538.1| putative DNA polymerase III epsilon chain [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298260889|gb|EFI03757.1| exonuclease [Bacteroides sp. 1_1_14]
          Length = 180

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 59/182 (32%), Gaps = 7/182 (3%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+     D ET   + K   +  +G V + +     + +   + P     +     +HG+
Sbjct: 1   MKDFAAIDFET--ANGKRTSVCSVGVVIVRNGKIVKKIY-RLIRPCPNYYTQWTTAVHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T    ++   F  +++E     +      +AHN+ FD G + A  +       +      
Sbjct: 58  TYADTEEAEDFPDVWAEIKPLIDG--LPLVAHNSPFDEGCLKAVHELYEMTYPNYKFYCT 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             +  +       N                + H AL D+   + + + ++    +     
Sbjct: 116 CRTSRKVFGKELPNHQLHTVAAR-CGYDLTNHHHALADAEACAQIALLIIPEPKKPKVDL 174

Query: 186 KT 187
            T
Sbjct: 175 HT 176


>gi|332160015|ref|YP_004296592.1| oligoribonuclease [Yersinia enterocolitica subsp. palearctica
          105.5R(r)]
 gi|318607428|emb|CBY28926.1| 3'-to-5' oligoribonuclease (orn) [Yersinia enterocolitica subsp.
          palearctica Y11]
 gi|325664245|gb|ADZ40889.1| oligoribonuclease [Yersinia enterocolitica subsp. palearctica
          105.5R(r)]
 gi|330862350|emb|CBX72509.1| oligoribonuclease [Yersinia enterocolitica W22703]
          Length = 181

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + +N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MAENQNNLIWIDLEMTGLDPEKDRIIEIA 29


>gi|300767630|ref|ZP_07077540.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300494615|gb|EFK29773.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 182

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 7/165 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             +  D ET   ++K D    +    + +   ++  F   + P         +++HGI +
Sbjct: 6   NFVAMDFET--ANAKRDSACSLALTVVRNNQISDE-FYTLIKPES-DFFWRNVQIHGIHE 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P F     +    F +++   IAHNA FD+G +   L        +   +    
Sbjct: 62  ADVADAPKF-PDVWQHIAPFFQRDRLVIAHNAPFDIGVLRNTLAHYGISAPEYLSMDTVK 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  R       + L+++C+     I  +  H AL DS   +++ +
Sbjct: 121 TSQRFYPELPNHKLDTVCQAL--DIDLQHHHNALDDSLACANILL 163


>gi|259507628|ref|ZP_05750528.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
 gi|259164807|gb|EEW49361.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
          Length = 494

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 75/204 (36%), Gaps = 9/204 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEALKLHGIT 66
            + FD+ET   +     I +IG V   +  + + T   F  P        P  + +HGIT
Sbjct: 126 FVAFDVET--ANDDWGSICQIGLVRYENGVEVDST-SWFCTPPEPLNFFEPANIAIHGIT 182

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +  +P+F+ +  +  DF  +     +AHNA+FD   I+        +    +     
Sbjct: 183 AEQVAGEPAFAEVLPKMVDFVGD--LPLVAHNAQFDFTAISRACAAAGIEAPVFNFGCSL 240

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                 +     + L ++ +  G+    R  H A  D+   + + I++    +       
Sbjct: 241 ALSRSSRLKFHNHRLPTVAQALGVE--LRKHHDATEDARACAGITIELARRQNHQGGFID 298

Query: 187 TNEDRFFKEEKKTVPNISLLKRDK 210
               + F         +  + RD+
Sbjct: 299 FIHSQGFTLGSLDTERVYPVLRDR 322


>gi|25028571|ref|NP_738625.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
 gi|23493856|dbj|BAC18825.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
          Length = 569

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 75/204 (36%), Gaps = 9/204 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEALKLHGIT 66
            + FD+ET   +     I +IG V   +  + + T   F  P        P  + +HGIT
Sbjct: 201 FVAFDVET--ANDDWGSICQIGLVRYENGVEVDST-SWFCTPPEPLNFFEPANIAIHGIT 257

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +  +P+F+ +  +  DF  +     +AHNA+FD   I+        +    +     
Sbjct: 258 AEQVAGEPAFAEVLPKMVDFVGD--LPLVAHNAQFDFTAISRACAAAGIEAPVFNFGCSL 315

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                 +     + L ++ +  G+    R  H A  D+   + + I++    +       
Sbjct: 316 ALSRSSRLKFHNHRLPTVAQALGVE--LRKHHDATEDARACAGITIELARRQNHQGGFID 373

Query: 187 TNEDRFFKEEKKTVPNISLLKRDK 210
               + F         +  + RD+
Sbjct: 374 FIHSQGFTLGSLDTERVYPVLRDR 397


>gi|238784781|ref|ZP_04628783.1| Oligoribonuclease [Yersinia bercovieri ATCC 43970]
 gi|238714294|gb|EEQ06304.1| Oligoribonuclease [Yersinia bercovieri ATCC 43970]
          Length = 181

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + +N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MAENQNNLIWIDLEMTGLDPERDRIIEIA 29


>gi|307128611|ref|YP_003880641.1| DNA polymerase III subunit alpha [Candidatus Sulcia muelleri CARI]
 gi|306483073|gb|ADM89943.1| DNA polymerase III, alpha subunit [Candidatus Sulcia muelleri CARI]
          Length = 1379

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 66/186 (35%), Gaps = 16/186 (8%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            I+FD ETTGL    +          R+++I      +  K        + P   +    
Sbjct: 2   YIIFDTETTGLPKDYNAPINNIINWPRLVKISWGLYDEKFKLIELKDYIIKPECYEIPFL 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           + K+HGI+ ++  +K    +   + ++    +   +I HN  FD+  I AE  RI K   
Sbjct: 62  STKIHGISTKYAIEKGYKINYVLKKFNKIINKYNFFIGHNVFFDIKIICAEFFRIKKKIF 121

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCK------RYGITISHRSKHGALLDSHLLSDVYI 172
              + I         + + +   + L           +       H +  D    S  + 
Sbjct: 122 LYKKKIIDTKEKSINYCAIKIGKDKLKWPTLTELYKKLFNDTFIAHDSKSDVLATSKCFF 181

Query: 173 KMMVGG 178
           +++  G
Sbjct: 182 ELLRIG 187


>gi|256811514|ref|YP_003128883.1| hypothetical protein Mefer_1580 [Methanocaldococcus fervens AG86]
 gi|256794714|gb|ACV25383.1| hypothetical protein Mefer_1580 [Methanocaldococcus fervens AG86]
          Length = 176

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLC 49
          M K + DIETTGL+    RI+ IG V + D +        + + + 
Sbjct: 1  MVKAIIDIETTGLNPMEHRIVAIG-VRIGDRTIILMDESEYYLLVN 45


>gi|110835017|ref|YP_693876.1| DNA polymerase III subunit epsilon [Alcanivorax borkumensis SK2]
 gi|110648128|emb|CAL17604.1| nuclease, putative [Alcanivorax borkumensis SK2]
          Length = 173

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK 39
          +  D ETTGLDS+   ++ I AV + +   
Sbjct: 2  VAIDCETTGLDSRTAELVSIAAVVIKEGRV 31


>gi|215487057|ref|YP_002329488.1| exodeoxyribonuclease X [Escherichia coli O127:H6 str. E2348/69]
 gi|312967045|ref|ZP_07781263.1| exonuclease family protein [Escherichia coli 2362-75]
 gi|331647439|ref|ZP_08348531.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M605]
 gi|331657890|ref|ZP_08358852.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA206]
 gi|215265129|emb|CAS09517.1| DNA exonuclease X [Escherichia coli O127:H6 str. E2348/69]
 gi|312288509|gb|EFR16411.1| exonuclease family protein [Escherichia coli 2362-75]
 gi|315299931|gb|EFU59169.1| exonuclease [Escherichia coli MS 16-3]
 gi|330911653|gb|EGH40163.1| exodeoxyribonuclease X [Escherichia coli AA86]
 gi|331043163|gb|EGI15301.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M605]
 gi|331056138|gb|EGI28147.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA206]
          Length = 220

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L  + K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKIRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|194433962|ref|ZP_03066234.1| exodeoxyribonuclease X [Shigella dysenteriae 1012]
 gi|194417834|gb|EDX33931.1| exodeoxyribonuclease X [Shigella dysenteriae 1012]
 gi|320182620|gb|EFW57509.1| Exodeoxyribonuclease X [Shigella boydii ATCC 9905]
 gi|332095285|gb|EGJ00309.1| exonuclease family protein [Shigella dysenteriae 155-74]
          Length = 220

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|332090017|gb|EGI95117.1| exonuclease family protein [Shigella boydii 5216-82]
          Length = 220

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|331663335|ref|ZP_08364245.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA143]
 gi|331059134|gb|EGI31111.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA143]
          Length = 220

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|239932382|ref|ZP_04689335.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
          14672]
 gi|291440749|ref|ZP_06580139.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
          14672]
 gi|291343644|gb|EFE70600.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
          14672]
          Length = 241

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG+D + DRI+    V         R     + P G      A ++HG+T E L
Sbjct: 11 AFDTETTGVDVEADRIVSAALVVQDAPGTRPRVTDWLVNP-GVPVPAAATEVHGLTQEHL 69

Query: 71 KDKPSFSSIFSE 82
          +    + +    
Sbjct: 70 QRNGRWPAPVMY 81


>gi|126700009|ref|YP_001088906.1| putative DNA polymerase III subunit epsilon [Clostridium difficile
           630]
 gi|254975983|ref|ZP_05272455.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-66c26]
 gi|255093371|ref|ZP_05322849.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           CIP 107932]
 gi|255101551|ref|ZP_05330528.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-63q42]
 gi|255307420|ref|ZP_05351591.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           ATCC 43255]
 gi|255315116|ref|ZP_05356699.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-76w55]
 gi|255517786|ref|ZP_05385462.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-97b34]
 gi|255650901|ref|ZP_05397803.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-37x79]
 gi|260683972|ref|YP_003215257.1| putative DNA polymerase III subunit epsilon [Clostridium difficile
           CD196]
 gi|260687632|ref|YP_003218766.1| putative DNA polymerase III subunit epsilon [Clostridium difficile
           R20291]
 gi|306520788|ref|ZP_07407135.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-32g58]
 gi|115251446|emb|CAJ69279.1| DNA polymerase III, epsilon subunit [Clostridium difficile]
 gi|260210135|emb|CBA64288.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           CD196]
 gi|260213649|emb|CBE05485.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           R20291]
          Length = 168

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 71/174 (40%), Gaps = 18/174 (10%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGA------VELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M+  +V D+ETTGLD         G       +  +   +  + +   + P G  +S   
Sbjct: 1   MKEYVVVDLETTGLDPYK------GCEIIEIGITEIKNEQIVKNYSRLIKPKGIISSFIT 54

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
              H   +    ++P    +   F  +  ++     AHNAKFD+ F+N  L+ ++ +P++
Sbjct: 55  ELTHISNEMVENEEP-LELVLPRFRKYIGDRTII--AHNAKFDLKFLNYYLRMLDLEPIN 111

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                  L    + +      L + C  Y I   + + H A  D+   + +++K
Sbjct: 112 NYICTVELLKKCKSYKGKNKKLETACAYYNIE--NINAHRADSDTLATAKLFLK 163


>gi|302522606|ref|ZP_07274948.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
 gi|302431501|gb|EFL03317.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
          Length = 239

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          FD+ETTG D + DRI+    + L        T    L P G +   EA  +HGI 
Sbjct: 11 FDLETTGTDIEQDRIVTAAVIRLDASGAVAHTRTWLLDP-GVEIPAEATAIHGIP 64


>gi|255656369|ref|ZP_05401778.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-23m63]
 gi|296450182|ref|ZP_06891943.1| epsilon subunit family exonuclease [Clostridium difficile NAP08]
 gi|296878563|ref|ZP_06902568.1| epsilon subunit family exonuclease [Clostridium difficile NAP07]
 gi|296260945|gb|EFH07779.1| epsilon subunit family exonuclease [Clostridium difficile NAP08]
 gi|296430370|gb|EFH16212.1| epsilon subunit family exonuclease [Clostridium difficile NAP07]
          Length = 168

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 71/174 (40%), Gaps = 18/174 (10%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGA------VELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M+  +V D+ETTGLD         G       +  +   +  + +   + P G  +S   
Sbjct: 1   MKEYVVVDLETTGLDPYK------GCEIIEIGITEIKNEQIVKNYSRLIKPKGIISSFIT 54

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
              H   +    ++P    +   F  +  ++     AHNAKFD+ F+N  L+ +N +P++
Sbjct: 55  ELTHISNEMVENEEP-LELVLPRFRKYIGDRTII--AHNAKFDLKFLNYYLRMLNLEPIN 111

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                  L    + +      L + C  Y I   + + H A  D+   + +++K
Sbjct: 112 NYICTVELLKKCKSYKGKNKKLETACAYYNIE--NINAHRADSDTLATAKLFLK 163


>gi|220921028|ref|YP_002496329.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
 gi|219945634|gb|ACL56026.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
          Length = 222

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 55/175 (31%), Gaps = 10/175 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFL-CPNGRKNSPEALKL 62
           R +  D+E TGL +  DRI+  GAV L   S        T    +  P    +       
Sbjct: 19  RLLAIDVEATGL-AARDRIVSFGAVALDTASLLGPSPAPTCHHLIFDPQRVSHPRAEAVH 77

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                      P  +++          Q    +AHNA FD G +  E     +  L    
Sbjct: 78  GYDDWLLRHQDP--AALHLNAIAALLGQADLIVAHNAAFDFGLLQREFAAAGRPALAART 135

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                +  RR             +          +HGAL D+ L   VY+ +   
Sbjct: 136 YCTLEAYRRRGEAGPATLDAVCRRVR--LQRTGERHGALEDAWLALRVYLWLQGC 188


>gi|217972890|ref|YP_002357641.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica
          OS223]
 gi|217498025|gb|ACK46218.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
          OS223]
          Length = 228

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK 39
          +  D+E TGL+ + D+I+ IG V +     
Sbjct: 43 VAMDLEMTGLNPQQDQILSIGLVPIERGEI 72


>gi|153001188|ref|YP_001366869.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica
          OS185]
 gi|151365806|gb|ABS08806.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
          OS185]
          Length = 228

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK 39
          +  D+E TGL+ + D+I+ IG V +     
Sbjct: 43 VAMDLEMTGLNPQQDQILSIGLVPIERGEI 72


>gi|264677043|ref|YP_003276949.1| exonuclease, RNase T and DNA polymerase III [Comamonas
          testosteroni CNB-2]
 gi|262207555|gb|ACY31653.1| Exonuclease, RNase T and DNA polymerase III [Comamonas
          testosteroni CNB-2]
          Length = 174

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D E TGL+   DRIIEI  V
Sbjct: 4  LDCEMTGLNPDRDRIIEIAVV 24


>gi|239948068|ref|ZP_04699821.1| DNA polymerase III subunit epsilon [Rickettsia endosymbiont of
          Ixodes scapularis]
 gi|239922344|gb|EER22368.1| DNA polymerase III subunit epsilon [Rickettsia endosymbiont of
          Ixodes scapularis]
          Length = 251

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELL---DYSK--TNRTFQVFLCPNGRKNS 56
            D ETTGL    D+I+E+G V+     D         F  +  P      
Sbjct: 2  FLDTETTGLSYVTDKILELGMVKFEYTNDGRIYNILEEFNQYQDPKEPIAP 52


>gi|260881524|ref|ZP_05404631.2| exonuclease [Mitsuokella multacida DSM 20544]
 gi|260848674|gb|EEX68681.1| exonuclease [Mitsuokella multacida DSM 20544]
          Length = 196

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 7/162 (4%)

Query: 6   KMRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            M     D ET TG     D    +  V +   +    ++   + P   + S    K+HG
Sbjct: 1   MMNFTAIDFETATG---ARDSACSVAVVTIRAGALV-DSYYTLIQPPANRYSYFNTKIHG 56

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +T+    +   F+ I+ E            +AHNAKFD+  + + L R        S   
Sbjct: 57  LTEADTANAADFAGIWPELEAKLEG--QLVVAHNAKFDMSVLRSCLARYGLQAPAFSYCD 114

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
                 R     + + L ++     +   H            
Sbjct: 115 TVAIARRAWPNLANHKLGTVGAYLNLHFRHHDALEDAKACAA 156


>gi|290961805|ref|YP_003492987.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260651331|emb|CBG74453.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 233

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDEF 69
           FD ETTG+D + DRI+   AV + D   T  R  +  + P G      A  +HG+TDE 
Sbjct: 3  AFDTETTGVDVETDRIVS-AAVVVQDAPGTRPRVTRWLVNP-GVPVPAGATAVHGLTDER 60

Query: 70 LKDKPSFSSIFS 81
          L+    + +   
Sbjct: 61 LQRDGRWPAPVM 72


>gi|269123136|ref|YP_003305713.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus
           moniliformis DSM 12112]
 gi|268314462|gb|ACZ00836.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus
           moniliformis DSM 12112]
          Length = 426

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 73/208 (35%), Gaps = 8/208 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+ D+ETTG+  KND I+++  ++++        F  ++ P    +  +A K+H I+ E 
Sbjct: 43  IILDVETTGIR-KNDEILQLSIIDIMGNVV----FDKYMKPKYVNDWDDAFKIHNISHEM 97

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+K   S    +      +                         K  +          +
Sbjct: 98  VKNKKYISYYKKDIEKILKKHKLIIG--YEVNSDIAFLRRAGIELKSNIVLDIAYLFSLL 155

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-INFGFKTN 188
              ++   R    SL           + H AL D       +  ++V   + + F +   
Sbjct: 156 FENENLIDRKIRPSLLDAAKFYNLDFNAHDALSDCIATLHCFKSILVEKKEKLEFKYDVQ 215

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             +F +EE K     S L +    + ++
Sbjct: 216 VMKFLEEENKVEEKTSKLTKLARKYVKL 243



 Score = 44.9 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 11/177 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+ D+ETTG+  +ND II++  +++         F  +  P       EA K+H I  E 
Sbjct: 251 IILDLETTGIR-ENDEIIQLSIIDIKGEKL----FNEYFKPINVTEWEEAYKIHNIGKEM 305

Query: 70  LKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           L+DK +      +  +  +  +          +      GF    +++++          
Sbjct: 306 LEDKLTIEEYREKIQNILDSTDYMIGYGIDFDYKLLQRQGFNVEHIKKVDVSDYFKYIYR 365

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              +  + K P           K  G   S       L+    +    ++ +   ++
Sbjct: 366 KIFNDPKLKRPKLIECSNYYGFKDRGFHNSLTDCFATLVSYKGIYKYMLEELSDRNE 422


>gi|329295775|ref|ZP_08253111.1| Orn [Plautia stali symbiont]
          Length = 182

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M   N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MTAGNENNLIWIDLEMTGLDPERDRIIEIA 30


>gi|91784777|ref|YP_559983.1| oligoribonuclease [Burkholderia xenovorans LB400]
 gi|122970228|sp|Q13VF8|ORN_BURXL RecName: Full=Oligoribonuclease
 gi|91688731|gb|ABE31931.1| Oligoribonuclease [Burkholderia xenovorans LB400]
          Length = 207

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 9/199 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKL 62
           ++ M  +  D+E TGL+  +DRIIEI  V       TN T    +  P    +  +    
Sbjct: 15  RSDMNLVWLDMEMTGLEPDSDRIIEIAVV------VTNSTLDRMVEGPVLAIHQSDETLA 68

Query: 63  HGITDEFLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                       S     + +      +         +     G        I +D    
Sbjct: 69  GMDQWNQNTHGRSGLIDRVKASTVSEADATEQIRDFLSVYVPPGKSPMCGNSICQDRRFM 128

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +R +  L           + L  LC+R+   I    +  A+  +       I  +    +
Sbjct: 129 ARWMPELERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYRE 188

Query: 181 INFGFKTNEDRFFKEEKKT 199
                   +     E+   
Sbjct: 189 HFLIPSAPDAANGAEKAAE 207


>gi|124007771|ref|ZP_01692473.1| 3'-5' exonuclease eri-1 [Microscilla marina ATCC 23134]
 gi|123986717|gb|EAY26498.1| 3'-5' exonuclease eri-1 [Microscilla marina ATCC 23134]
          Length = 185

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 9/174 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRI---IEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKL 62
           M  ++ D+E T  +++ +R    IEIGAV + +  K    F  F+ P      S    +L
Sbjct: 1   MVYVIVDLEATCWETRENRANETIEIGAVCIGNEGKWVDEFDTFVKPVTHPVLSEFCTQL 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAELQRINKDPL 118
             IT E + D P F     +F  + N           +      V F N  L        
Sbjct: 61  TSITQEMVDDAPLFPEALDDFQQWINNCANGDQYVLCSWGYYDRVQFKNDCLLHNLPTQW 120

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             S I      A  K+      +    ++ G      + H  + D+  ++D+++
Sbjct: 121 LASHISLKHQYADIKNMRRPIGMKKALQKEG-LFLSGTHHRGIDDAKNIADIFL 173


>gi|157161311|ref|YP_001458629.1| exodeoxyribonuclease X [Escherichia coli HS]
 gi|157066991|gb|ABV06246.1| exodeoxyribonuclease X [Escherichia coli HS]
          Length = 220

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|238757512|ref|ZP_04618697.1| Oligoribonuclease [Yersinia aldovae ATCC 35236]
 gi|238704274|gb|EEP96806.1| Oligoribonuclease [Yersinia aldovae ATCC 35236]
          Length = 181

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + +N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MAENQNNLIWIDLEMTGLDPERDRIIEIA 29


>gi|300775432|ref|ZP_07085294.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC
           35910]
 gi|300506172|gb|EFK37308.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC
           35910]
          Length = 407

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 7/194 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIE+ G   +N+ II+I          T++ F   + P G   +P   KL  IT + +
Sbjct: 4   IIDIESNGAGYRNECIIDIAIYRYDGQKITDQ-FISLVNPEG-DITPFVQKLTSITPKMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K  P F  I     +    QN   + HN  FD   +    +R+  D              
Sbjct: 62  KTAPKFHEIAKRVIE--ITQNTTLVGHNIDFDYRMLRQSFKRLGYD---FKINTLDTIPL 116

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
            +K        +       + I   + H A  D+    +++  ++   ++     K +E+
Sbjct: 117 AKKLIPDEVSYSLGKLVKSLGIPLTNHHRAEGDARATLELFKLLISKDTENEIIQKQHEE 176

Query: 191 RFFKEEKKTVPNIS 204
              K     +  ++
Sbjct: 177 SNAKTYINKIKELT 190


>gi|315057872|gb|ADT72201.1| Exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 256

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 6/122 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIE+TG       I+EIGAV++ +  +  R FQ F+    ++      +L GIT E +
Sbjct: 74  IVDIESTGG-VSKGEILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYEMV 129

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ PS + + S+F      +++ ++AHN +FD  FI+  L       L   RI       
Sbjct: 130 ENAPSLTKVLSDF--RLFLKDSIFVAHNVRFDYSFISKALNECGFGILLNRRICTIEFAQ 187

Query: 131 RR 132
             
Sbjct: 188 CC 189


>gi|255321503|ref|ZP_05362661.1| mature parasite-infected erythrocyte surface antigen [Campylobacter
           showae RM3277]
 gi|255301359|gb|EET80618.1| mature parasite-infected erythrocyte surface antigen [Campylobacter
           showae RM3277]
          Length = 311

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 6/96 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIET+G    + +IIEIGA++L +     + F+ F+            +L GIT E L
Sbjct: 75  VVDIETSGG-INSGQIIEIGALKLQNGEIIGK-FETFV--YAPYVPENISELTGITAEHL 130

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           K+ PS + +  +F        + ++AHN +FD GFI
Sbjct: 131 KNAPSLAFVMEQF--KVFLGQSVFVAHNVRFDYGFI 164


>gi|171913521|ref|ZP_02928991.1| hypothetical protein VspiD_20115 [Verrucomicrobium spinosum DSM
           4136]
          Length = 202

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 5/122 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+ETTGLD +   I+EIGAV +L   +    F +   P+               D
Sbjct: 6   RLLVTDLETTGLDGRACGIVEIGAVWMLGAGE----FVMKCRPHADAVIEARAMEVNGCD 61

Query: 68  EFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             L     +      +F ++           N + D+ F+    +R   +     R +D 
Sbjct: 62  WHLDPTVAAEVEALEQFVEWVGAGPVILCGQNPRHDLWFLQEGAKRHGLELPFVHRTLDL 121

Query: 127 LS 128
            +
Sbjct: 122 HT 123


>gi|300812809|ref|ZP_07093204.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
          PB2003/044-T3-4]
 gi|300496145|gb|EFK31272.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
          PB2003/044-T3-4]
          Length = 119

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
          VFD+E TG      +II+IGA+++ D     + F  ++ P+  K +     L GI++   
Sbjct: 10 VFDLEITGK-----KIIQIGALKVRDDQTVAK-FSTYVNPSLEKINDYVSHLTGISNYQT 63

Query: 71 KDKPSFSSIFSEFWDFF 87
             P    +  +F DF 
Sbjct: 64 DAVPLIDEVMPDFLDFV 80


>gi|92113002|ref|YP_572930.1| DNA polymerase III subunit epsilon [Chromohalobacter salexigens DSM
           3043]
 gi|91796092|gb|ABE58231.1| Exonuclease [Chromohalobacter salexigens DSM 3043]
          Length = 205

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 5/172 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQ-VFLCPNGRKNSPEALKLHGITD 67
           I  D ETT LD +   ++ I AV++ D    T+ +       P+    S +++++HG+  
Sbjct: 32  IALDCETTDLDPRQADLVAIAAVKVRDGRVLTSESLDLRLQRPD--SLSSDSIRIHGLRG 89

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             L    +     +   DF   +    W        +          +            
Sbjct: 90  VDLLGGEALGDALNTLLDFIGNRPLVGWCIDYDVAVINRHLRPRTGFDLPNRTIDVCRLY 149

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               RR  P    DL        + +    +H AL D+   + +Y+++  G 
Sbjct: 150 ARERRRAQPDVEPDLRFEAMSEALGVPVMGRHTALGDAVTTALMYLRLCRGQ 201


>gi|30683321|ref|NP_850090.1| exonuclease family protein [Arabidopsis thaliana]
 gi|83305201|sp|Q9ZVE0|ORN_ARATH RecName: Full=Oligoribonuclease
 gi|17381150|gb|AAL36387.1| unknown protein [Arabidopsis thaliana]
 gi|25054981|gb|AAN71962.1| unknown protein [Arabidopsis thaliana]
 gi|330252818|gb|AEC07912.1| oligoribonuclease [Arabidopsis thaliana]
          Length = 222

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN 41
           D+E TGL+ + DRI+EI  + + +   T 
Sbjct: 49 IDLEMTGLNVEVDRILEIACI-ITNGDLTQ 77


>gi|79323145|ref|NP_001031426.1| exonuclease family protein [Arabidopsis thaliana]
 gi|222423704|dbj|BAH19818.1| AT2G26970 [Arabidopsis thaliana]
 gi|330252819|gb|AEC07913.1| oligoribonuclease [Arabidopsis thaliana]
          Length = 218

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN 41
           D+E TGL+ + DRI+EI  + + +   T 
Sbjct: 45 IDLEMTGLNVEVDRILEIACI-ITNGDLTQ 73


>gi|56460284|ref|YP_155565.1| 3'-5' exonuclease [Idiomarina loihiensis L2TR]
 gi|56179294|gb|AAV82016.1| 3'-5' exonuclease [Idiomarina loihiensis L2TR]
          Length = 215

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 47/164 (28%), Gaps = 17/164 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  DIE+TGLD K  +I+ I              +     P     + +        +
Sbjct: 26  RYVALDIESTGLDPKKHQILSIA-------------WMSIHPPVMHLGNAQYHVFAHGQE 72

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L   P+   +  + +   +E    +   +   +   +    + ++   L         
Sbjct: 73  LELGQSPTIHGLTRQDFLHSSEPKQTFAMLSRALNDAVLVCHHKGMDWRFLKHIE----A 128

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                  P +  D  +  K       H+  +G  L        Y
Sbjct: 129 QYGIPFKPLAIFDTLAFEKHKLERNPHQPIYGGQLALSACRKRY 172


>gi|30063256|ref|NP_837427.1| exodeoxyribonuclease X [Shigella flexneri 2a str. 2457T]
 gi|56479974|ref|NP_707706.2| exodeoxyribonuclease X [Shigella flexneri 2a str. 301]
 gi|30041508|gb|AAP17236.1| hypothetical protein S1920 [Shigella flexneri 2a str. 2457T]
 gi|56383525|gb|AAN43413.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|281601259|gb|ADA74243.1| Exodeoxyribonuclease 10 [Shigella flexneri 2002017]
 gi|313650662|gb|EFS15064.1| exonuclease family protein [Shigella flexneri 2a str. 2457T]
 gi|332757646|gb|EGJ87979.1| exonuclease family protein [Shigella flexneri 2747-71]
 gi|332758031|gb|EGJ88357.1| exonuclease family protein [Shigella flexneri K-671]
 gi|332766817|gb|EGJ97018.1| exonuclease family protein [Shigella flexneri 2930-71]
 gi|333018617|gb|EGK37911.1| exonuclease family protein [Shigella flexneri K-304]
          Length = 220

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D         + + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSLLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGLKYSNMALYKTRKLNVQTPLGLHHHRALYDCYITAALLIDIMNT 153


>gi|238787531|ref|ZP_04631329.1| Oligoribonuclease [Yersinia frederiksenii ATCC 33641]
 gi|238724318|gb|EEQ15960.1| Oligoribonuclease [Yersinia frederiksenii ATCC 33641]
          Length = 181

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + +N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MAENQNNLIWIDLEMTGLDPERDRIIEIA 29


>gi|332188896|ref|ZP_08390601.1| exonuclease family protein [Sphingomonas sp. S17]
 gi|332011078|gb|EGI53178.1| exonuclease family protein [Sphingomonas sp. S17]
          Length = 253

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 45/164 (27%), Gaps = 9/164 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL---LDYS--KTNRTFQVFLCPNGRKNSPEALKLHGI 65
           V D+ETTG       + EIG  ++    +           + + P GR   P    +H I
Sbjct: 11  VIDLETTGQAPPTHGVCEIGWQDVALGKNGRWELEGEGGSLLVNP-GRPIPPITQAIHHI 69

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DE + D P +  +        +           + D                  +    
Sbjct: 70  LDEQVADAPWWHDVARRV---LDPWPRRLALAAHRADFEQQFCTPAMTQSADWICTWKCA 126

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                     S++           +       H A  D+++ + 
Sbjct: 127 LRLWPDSPSFSNQVLRYWRKPEGLVHERGLPIHRAFPDAYVTAH 170


>gi|241894744|ref|ZP_04782040.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides
           ATCC 33313]
 gi|241871956|gb|EER75707.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides
           ATCC 33313]
          Length = 177

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET    +K    + +G   + D    +  F   + P+         ++HGIT
Sbjct: 1   MNFIAMDFET--ASAKRYSAVSLGLAVVRDNKLVDE-FYTLIKPDS-FFDKRNTRIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124
           +  +++ P F     E    F   N   IAHNA FD G +   L   + D         +
Sbjct: 57  EADVRNAPIF-PEVWEQIQQFYTPNQLVIAHNAPFDNGVLRETLTHYDIDLPHYLSLDTV 115

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            T      + P+ + +  +      +   H + +  +  + +L
Sbjct: 116 RTSRKLYPELPNHKLNTVAAALGIDLKHHHNALNDTVAAAEIL 158


>gi|110805789|ref|YP_689309.1| exodeoxyribonuclease X [Shigella flexneri 5 str. 8401]
 gi|110615337|gb|ABF04004.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 220

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D         + + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSLLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRCVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|291619097|ref|YP_003521839.1| Orn [Pantoea ananatis LMG 20103]
 gi|291154127|gb|ADD78711.1| Orn [Pantoea ananatis LMG 20103]
 gi|327395429|dbj|BAK12851.1| oligoribonuclease Orn [Pantoea ananatis AJ13355]
          Length = 194

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M   N+   I  D+E TGLD + DRIIEI 
Sbjct: 13 MATGNENNLIWIDLEMTGLDPERDRIIEIA 42


>gi|289663085|ref|ZP_06484666.1| ribonuclease T [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 211

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 13/185 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D     ++EI  V +            T    L P  G +  P++L++ G
Sbjct: 26  VVVDVETGGFDWNKHALLEIACVPIEMDAAGRFFPGDTASAHLVPAPGLEIDPKSLEITG 85

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 +        +  Q A  + HNA FD+ F+NA + R+   
Sbjct: 86  IVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 145

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      ++        +  L    +  G+  +    H A+ D+   + ++  +  
Sbjct: 146 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNTADAHSAVYDTEQTARLFCTIAN 205

Query: 177 GGSQI 181
                
Sbjct: 206 AWPGP 210


>gi|332707583|ref|ZP_08427616.1| putative exonuclease [Lyngbya majuscula 3L]
 gi|332353646|gb|EGJ33153.1| putative exonuclease [Lyngbya majuscula 3L]
          Length = 186

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 59/179 (32%), Gaps = 9/179 (5%)

Query: 11  VFDIETT---GLDS--KNDRIIEIGA--VELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           V D+E T   G     + + IIEIG   ++++      +   + + P   + S    KL 
Sbjct: 10  VVDVEATCWQGKPPPGQENEIIEIGICVLDVVSGKPLEKD-SILVKPERSRVSEFCTKLT 68

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            +T E +    SF    S   D +      W ++   +D      +           +R 
Sbjct: 69  TLTQEQVDQGISFVEACSMLQDKYLSARRVWASY-GDYDRNQFQKQCTSRFLRYPFGTRH 127

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+  ++             +            + H    D+  ++ ++ ++++      
Sbjct: 128 INIKTLFAISQALPHEVGMAQALDLLNLPLEGTHHRGGDDAWNIARIFSRLLLQLRNTG 186


>gi|238750063|ref|ZP_04611566.1| Oligoribonuclease [Yersinia rohdei ATCC 43380]
 gi|238711607|gb|EEQ03822.1| Oligoribonuclease [Yersinia rohdei ATCC 43380]
          Length = 181

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + +N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MAENQNNLIWIDLEMTGLDPQRDRIIEIA 29


>gi|187924944|ref|YP_001896586.1| oligoribonuclease [Burkholderia phytofirmans PsJN]
 gi|187716138|gb|ACD17362.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
           phytofirmans PsJN]
          Length = 203

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 56/195 (28%), Gaps = 9/195 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKL 62
           ++ M  +  D+E TGL+  +DRIIEI  V       TN T    +  P    +  +    
Sbjct: 15  RSDMNLVWLDMEMTGLEPDSDRIIEIAVV------VTNSTLDRMVEGPVLAIHQSDETLA 68

Query: 63  HGITDEFLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                       S     + +      +         +     G        I +D    
Sbjct: 69  KMDQWNQNTHGRSGLIDRVKASTVSEADAAEQIRDFLSVFVPPGKSPMCGNSICQDRRFM 128

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +R +  L           + L  LC+R+   I    +  A+  +       I  +    +
Sbjct: 129 ARWMPDLERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYRE 188

Query: 181 INFGFKTNEDRFFKE 195
                   +     E
Sbjct: 189 HFLIPSAPDAANGAE 203


>gi|305433007|ref|ZP_07402163.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20]
 gi|304443708|gb|EFM36365.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20]
          Length = 253

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 6/164 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIE+TG   KN +I+EIGAV++ +  + +R F   +    ++      +L GI  + +
Sbjct: 74  IVDIESTGG-IKNGQILEIGAVKIKNLQEIDR-FSSLV--QVKEIPENITELTGINLDMV 129

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD PS + + ++F      +++ ++AHN +FD GFI+  L       L   RI       
Sbjct: 130 KDAPSLTKVLNDF--RLFLKDSIFVAHNVRFDYGFISKALNECGFGILLNRRICTIEFAQ 187

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                                  HR+ + AL  + +      K+
Sbjct: 188 CCIESPRYKLDVLKELLGIKNAHHRALNDALAAAEIFKHCLGKL 231


>gi|302758050|ref|XP_002962448.1| hypothetical protein SELMODRAFT_141141 [Selaginella
          moellendorffii]
 gi|300169309|gb|EFJ35911.1| hypothetical protein SELMODRAFT_141141 [Selaginella
          moellendorffii]
          Length = 236

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN 41
           D+E TGLD   DRI+EI  + + D   T 
Sbjct: 63 IDLEMTGLDVCKDRILEIACI-ITDGKLTK 91


>gi|123440753|ref|YP_001004745.1| oligoribonuclease [Yersinia enterocolitica subsp. enterocolitica
          8081]
 gi|166216592|sp|A1JIQ8|ORN_YERE8 RecName: Full=Oligoribonuclease
 gi|122087714|emb|CAL10499.1| oligoribonuclease [Yersinia enterocolitica subsp. enterocolitica
          8081]
          Length = 181

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + +N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MAENQNNLIWIDLEMTGLDPERDRIIEIA 29


>gi|85058292|ref|YP_453994.1| oligoribonuclease [Sodalis glossinidius str. 'morsitans']
 gi|123520179|sp|Q2NW86|ORN_SODGM RecName: Full=Oligoribonuclease
 gi|84778812|dbj|BAE73589.1| putative oligoribonuclease [Sodalis glossinidius str.
          'morsitans']
          Length = 181

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 11 IDLEMTGLDPERDRIIEIA 29


>gi|113460447|ref|YP_718509.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT]
 gi|170718007|ref|YP_001783526.1| exonuclease RNase T and DNA polymerase III [Haemophilus somnus
           2336]
 gi|112822490|gb|ABI24579.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT]
 gi|168826136|gb|ACA31507.1| Exonuclease RNase T and DNA polymerase III [Haemophilus somnus
           2336]
          Length = 236

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 62/170 (36%), Gaps = 4/170 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D ETTGL+S  D I+ +  V + + +   ++ +  F+    ++   + + ++ I  
Sbjct: 52  YLVIDFETTGLNSMMDNILSVATVPIDNLTLDISKAWHQFV-AEQQEIKEDTVIINHILP 110

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L    +     ++ ++    +         +         ++               +
Sbjct: 111 QMLNGAETLDDTMNKLFELMQGRILIAHGSTIEKRFILHYLNVRYNLSQFPLFWLDTLKI 170

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +  +   +   L+ +  +Y +       H AL+D+    ++++  +  
Sbjct: 171 ERSLCQDNENNYQLSHIRNKYNLPEYIG--HNALIDAISAGELFLAQLEK 218


>gi|86358436|ref|YP_470328.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli CFN 42]
 gi|86282538|gb|ABC91601.1| probable DNA polymerase III, epsilon subunit protein [Rhizobium
           etli CFN 42]
          Length = 196

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 5/150 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      +G   + +   T R  +  + P   + S   + +HGI 
Sbjct: 1   MKTIAIDFET--ANEQRGSACSVGLAWIEEGRVT-RVEERLIRPRDMRFSGMNIAIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D P F  +  EF +  +       AHNA FD     A L    +   + + +   
Sbjct: 58  PEHVEDAPEFPEVMDEFHEDISGATMI--AHNAAFDFSVWRASLDLYRQSYPELTYLCSL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156
               R       + LN + +  G+   H +
Sbjct: 116 KMAQRIWPHFLSHRLNLIAEHLGLRFMHHN 145


>gi|209522085|ref|ZP_03270737.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
          H160]
 gi|209497475|gb|EDZ97678.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
          H160]
          Length = 251

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          ++ M  +  D+E TGL+   DRIIEI  V
Sbjct: 63 RSDMNLVWLDMEMTGLEPDTDRIIEIAVV 91


>gi|29828689|ref|NP_823323.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
          MA-4680]
 gi|29605793|dbj|BAC69858.1| putative DNA polymerase III epsilon subunit [Streptomyces
          avermitilis MA-4680]
          Length = 240

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
          FD+ETTG D +  RI+    +E+       R  +    P 
Sbjct: 11 FDLETTGTDPREARIVTGAVIEVKGQEPVGRR-EWLADPG 49


>gi|301645642|ref|ZP_07245570.1| exonuclease [Escherichia coli MS 146-1]
 gi|301076071|gb|EFK90877.1| exonuclease [Escherichia coli MS 146-1]
          Length = 220

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNVALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|226308478|ref|YP_002768438.1| exonuclease [Rhodococcus erythropolis PR4]
 gi|226187595|dbj|BAH35699.1| putative exonuclease [Rhodococcus erythropolis PR4]
          Length = 241

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ETTG D    RI+    V ++D S    T    L P     +  +      T+   
Sbjct: 26  AFDLETTGRDPSTARIVS-ACVAVIDGSNV-ETRTWLLDPGVDIPADASAIHGISTEYAA 83

Query: 71  KDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFIN 107
           +   +++  + E  D  +         +A NA +D+  ++
Sbjct: 84  RHGQNYAEGYEEIRDALHNSWARDHAVVAFNASYDLTVMH 123


>gi|58616403|ref|YP_195533.1| DNA polymerase III subunit epsilon [Azoarcus sp. EbN1]
 gi|56315865|emb|CAI10509.1| putative exonuclease [Aromatoleum aromaticum EbN1]
          Length = 342

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEFLK 71
           D+ETTGL   +D+II+IG V       + +  +V    +G ++    +            
Sbjct: 47  DVETTGLKKDSDKIIDIGLVLAEFDRVSGQVLRVLERYSGFEDPGRPIPEEITRLTGIRD 106

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           +     +      +    +    +AHNA FD GF+        K     S+     S   
Sbjct: 107 EDVLEQTFDDARVEALIARADLVVAHNAPFDRGFLELRFPSFQKKWWACSQREAPWSQMM 166


>gi|309791196|ref|ZP_07685728.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
 gi|308226758|gb|EFO80454.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
          Length = 272

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTGLD +   R+ E+  + +   +         L P+ R   PEA  ++G  D 
Sbjct: 15  VFFDLETTGLDLRAGHRVCELALLRVR-GAAVEDYLGSALRPD-RLLDPEAAAVNGFQDA 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            L+  P F+S+            A  IAHN  FD+ F
Sbjct: 73  ELRGAPRFASVAGRVQR--MAHGAVLIAHNLPFDMAF 107


>gi|302815434|ref|XP_002989398.1| hypothetical protein SELMODRAFT_229455 [Selaginella
          moellendorffii]
 gi|300142792|gb|EFJ09489.1| hypothetical protein SELMODRAFT_229455 [Selaginella
          moellendorffii]
          Length = 236

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN 41
           D+E TGLD   DRI+EI  + + D   T 
Sbjct: 63 IDLEMTGLDVCKDRILEIACI-ITDGKLTK 91


>gi|292670219|ref|ZP_06603645.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648171|gb|EFF66143.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 179

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 8/170 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFD ETTG  S  D ++ +  V+    +  +  +     P  +   P+A K++ I+ 
Sbjct: 4   KILVFDTETTGFRSD-DEVLTLAVVDGAGATVVDGMYA----PVRKNAWPDAEKINRISP 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT- 126
             + + P   +  +E    FN+     + +N +FD+  +     RI         +  + 
Sbjct: 59  AMVVNCPPILAQQAELERMFNDPETLLVGYNIEFDIRLLAQSGIRIQNPNRHDVMLAFSE 118

Query: 127 --LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  R+       L      Y         HGAL D+      Y KM
Sbjct: 119 FRKVPDARRGGYRWWKLAECADYYRYDWGTTKAHGALADTLATLFCYQKM 168


>gi|170700979|ref|ZP_02891961.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
          ambifaria IOP40-10]
 gi|170134119|gb|EDT02465.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
          ambifaria IOP40-10]
          Length = 206

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGLD  NDRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43


>gi|283832758|ref|ZP_06352499.1| exodeoxyribonuclease 10 [Citrobacter youngae ATCC 29220]
 gi|291072441|gb|EFE10550.1| exodeoxyribonuclease 10 [Citrobacter youngae ATCC 29220]
          Length = 220

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVVDGKIV-NPMSNLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I  +++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDIIPQYY-----GSDWYVAHNASFDRRVLPEMPGEWICT-------MKLSRRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T +    H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPAGLHHHRALYDCYITAALLIDIMQT 153


>gi|289670069|ref|ZP_06491144.1| ribonuclease T [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 211

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 13/185 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D     ++EI  V +            T    L P  G +  P++L++ G
Sbjct: 26  VVVDVETGGFDWNKHALLEIACVPIEMDAAGRFFPGDTASAHLVPAPGLEIDPKSLEITG 85

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 +        +  Q A  + HNA FD+ F+NA + R+   
Sbjct: 86  IVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 145

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      ++        +  L    +  G+  +    H A+ D+   + ++  +  
Sbjct: 146 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCTIAN 205

Query: 177 GGSQI 181
                
Sbjct: 206 AWPGP 210


>gi|302541136|ref|ZP_07293478.1| putative DNA polymerase III epsilon subunit [Streptomyces
          hygroscopicus ATCC 53653]
 gi|302458754|gb|EFL21847.1| putative DNA polymerase III epsilon subunit [Streptomyces
          himastatinicus ATCC 53653]
          Length = 241

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG+D ++DRI+    V            +  + P G      A ++HG+TD  L
Sbjct: 11 AFDTETTGIDVEHDRIVSAALVVQRGAGSLPEVRRWLVSP-GIPVPQAATEIHGLTDTHL 69

Query: 71 KDKPSFSSIFS 81
          +    + +   
Sbjct: 70 QQHGRWPAPVM 80


>gi|187779049|ref|ZP_02995522.1| hypothetical protein CLOSPO_02644 [Clostridium sporogenes ATCC
           15579]
 gi|187772674|gb|EDU36476.1| hypothetical protein CLOSPO_02644 [Clostridium sporogenes ATCC
           15579]
          Length = 256

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 18/180 (10%)

Query: 7   MRKIVFDIETTGLD--SKND-------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNS 56
           M  I+FD+E    +    N         II+IGA++L +   T  TF   + P      +
Sbjct: 1   MNYIIFDLE---FNQGYNNHFEIKCPFEIIQIGAIKLNEGFTTIDTFNALVKPEIYSDLN 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQ 111
           P    L  +T + L     F  ++ +F +F N     +            ++       +
Sbjct: 58  PFVKNLTNLTMDSLNKARPFRDVYKDFLEFLNKENKDKNIFCIWGMTDMKELFRNIVYYE 117

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              K        +   +     +P S N   S          +   H A  D+   ++V+
Sbjct: 118 LDTKSIPKEYINVQAYTGKYLNYPKSVNIGLSNAVELFHITKNNDFHNAFNDAFYTTEVF 177


>gi|332184270|gb|AEE26524.1| Exodeoxyribonuclease I [Francisella cf. novicida 3523]
          Length = 482

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 59/220 (26%), Gaps = 4/220 (1%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEA 59
           M +      + +D+ETTG+++  D++++  A+           F  F+  N      P A
Sbjct: 1   MFQNQT--FLFYDLETTGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPIA 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
              H I+        S      +     N      I +N               N  P  
Sbjct: 59  TITHHISIAQANTGVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPY 118

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +  +  S A    P                     +    +   L +      +  G 
Sbjct: 119 SHQFKNGCSRADL-FPIVTCYHLFCNDVLKWPKILDEEGQQKISLKLENLNTENNLYSGG 177

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           + +             +K  + N  + +     F +   E
Sbjct: 178 RAHDAITDVIVTVELAKKLKIANPKMWQFLLTKFNKQNDE 217


>gi|325524019|gb|EGD02205.1| oligoribonuclease [Burkholderia sp. TJI49]
          Length = 208

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGLD  NDRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43


>gi|307132771|ref|YP_003884787.1| oligoribonuclease [Dickeya dadantii 3937]
 gi|306530300|gb|ADN00231.1| oligoribonuclease [Dickeya dadantii 3937]
          Length = 183

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M+ +N    I  D+E TGLD + DRIIEI 
Sbjct: 4  MVNEN--NLIWIDLEMTGLDPERDRIIEIA 31


>gi|254583524|ref|XP_002497330.1| ZYRO0F03036p [Zygosaccharomyces rouxii]
 gi|238940223|emb|CAR28397.1| ZYRO0F03036p [Zygosaccharomyces rouxii]
          Length = 251

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD  +DRIIEI  +    +     N  ++  +  +               
Sbjct: 43 VDCEMTGLDHNSDRIIEICCIITDGHLSVVDNNCYESVIHCDKSILDQMGPWCVEHH 99


>gi|256377108|ref|YP_003100768.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
 gi|255921411|gb|ACU36922.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
          Length = 372

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 75/234 (32%), Gaps = 18/234 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D E T       R+IEI  V     +         + P G + +P A + HGIT + 
Sbjct: 94  VVLDTELTDF---TGRVIEIAVVATDGATL----LTSLVDPEGAQINPYAQRAHGITAQM 146

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P+   ++ +       +     A NA FD+  + AE + +  D   P  +      
Sbjct: 147 LTGAPTLEQLWPKLDHVLRGKRVI--AWNAPFDLTRLRAEHRHLFGDADLPDWLTGPWLC 204

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           A RKH +   D N+    +         H A  D         +M            T  
Sbjct: 205 AMRKHAAWVGDRNTKGGGF-RNHRLEGGHRAEGDCLAALAWIKRMADTAPGTEAHAGTGA 263

Query: 190 DRFFKEEKKTVPNISLLKRDKPLFTRITKEEL--------DEHDKTIQTLGKNA 235
                       +   +    P     T  EL         EH ++++ +   A
Sbjct: 264 HAGTGAHAVAGAHPGAVTTGAPEPDLATIRELWPQVLGKVREHSRSLEAMLGKA 317


>gi|170024544|ref|YP_001721049.1| exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis YPIII]
 gi|186895217|ref|YP_001872329.1| exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis PB1/+]
 gi|169751078|gb|ACA68596.1| Exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis YPIII]
 gi|186698243|gb|ACC88872.1| Exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis PB1/+]
          Length = 217

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 8/144 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             ++ D ETTGL   +  IIEI  ++              + P  +    EA  +HGIT+
Sbjct: 44  NYLILDTETTGLG-NDAEIIEISIIDCTGKIL----LDTLVKP-IKAIPAEATAIHGITN 97

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + D P++  I  +F       +   + +NA FD   I       N    +   I D  
Sbjct: 98  DIVADAPTWRDIHWQF--MVLTNDRTLLIYNASFDSRLIFQTAAANNCPVPEKKYIFDAE 155

Query: 128 SIARRKHPSSRNDLNSLCKRYGIT 151
            +                K     
Sbjct: 156 CVMESYAKYYGQWDQKRNKFKWQR 179


>gi|163794470|ref|ZP_02188441.1| DNA polymerase III, epsilon subunit [alpha proteobacterium
          BAL199]
 gi|159180194|gb|EDP64717.1| DNA polymerase III, epsilon subunit [alpha proteobacterium
          BAL199]
          Length = 458

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
          I  DIETTGLD+     ++ GA+ +       +   +  L P G      ++ +HGITD 
Sbjct: 15 IAIDIETTGLDASRAHAVQFGAIPIAKGVLKPDDACEQMLNP-GIPIPSSSIAIHGITDA 73

Query: 69 FLKDKPSFSSIFSE 82
           +++ P+ S ++  
Sbjct: 74 MVRNAPTLSDVWPN 87


>gi|150025025|ref|YP_001295851.1| exonuclease [Flavobacterium psychrophilum JIP02/86]
 gi|149771566|emb|CAL43037.1| Probable exonuclease [Flavobacterium psychrophilum JIP02/86]
          Length = 188

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC 49
          RK+   IETTG++   D+II IGA+ +  +  + +   ++ L 
Sbjct: 29 RKVALYIETTGINPAKDKIISIGAIAIEKNQIRIDNCLEIELN 71


>gi|28899651|ref|NP_799256.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD
          2210633]
 gi|260361502|ref|ZP_05774549.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
          K5030]
 gi|260879140|ref|ZP_05891495.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
          AN-5034]
 gi|260895473|ref|ZP_05903969.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
          Peru-466]
 gi|260903319|ref|ZP_05911714.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
          AQ4037]
 gi|28807903|dbj|BAC61140.1| putative DNA polymerase III, epsilon subunit [Vibrio
          parahaemolyticus RIMD 2210633]
 gi|308088058|gb|EFO37753.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
          Peru-466]
 gi|308091615|gb|EFO41310.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
          AN-5034]
 gi|308109530|gb|EFO47070.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
          AQ4037]
 gi|308112864|gb|EFO50404.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
          K5030]
 gi|328472225|gb|EGF43095.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus
          10329]
          Length = 209

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 5  NKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC 49
          +K   +  D ETT LD     ++ I A +++ +   T++ F+V L 
Sbjct: 26 HKTEFVSLDCETTSLDPNRAELVTIAATKIIDNRILTSQPFEVRLR 71


>gi|115351008|ref|YP_772847.1| oligoribonuclease [Burkholderia ambifaria AMMD]
 gi|172060013|ref|YP_001807665.1| oligoribonuclease [Burkholderia ambifaria MC40-6]
 gi|122323700|sp|Q0BH60|ORN_BURCM RecName: Full=Oligoribonuclease
 gi|115280996|gb|ABI86513.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
          ambifaria AMMD]
 gi|171992530|gb|ACB63449.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
          ambifaria MC40-6]
          Length = 206

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGLD  NDRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43


>gi|269218897|ref|ZP_06162751.1| putative DNA polymerase III epsilon subunit [Actinomyces sp. oral
          taxon 848 str. F0332]
 gi|269212008|gb|EEZ78348.1| putative DNA polymerase III epsilon subunit [Actinomyces sp. oral
          taxon 848 str. F0332]
          Length = 240

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 1  MIRKNKM---RKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44
          M  +N M     ++ FD ETTG+D K DR++    V + +   + R +
Sbjct: 1  MDEENAMWTSSPVIGFDTETTGIDPKRDRLVTCSLVAVTEEGVSKRYW 48


>gi|121997034|ref|YP_001001821.1| oligoribonuclease [Halorhodospira halophila SL1]
 gi|166216263|sp|A1WTK7|ORN_HALHL RecName: Full=Oligoribonuclease
 gi|121588439|gb|ABM61019.1| Exonuclease, RNase T and DNA polymerase III [Halorhodospira
          halophila SL1]
          Length = 183

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD   DRIIEI  V
Sbjct: 11 IDLEMTGLDPSRDRIIEIAVV 31


>gi|57168588|ref|ZP_00367721.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli
           RM2228]
 gi|57020093|gb|EAL56770.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli
           RM2228]
          Length = 251

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 6/164 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIE+TG   KN +I+EIGAV++ +  + +R F   +    ++      +L GI  + +
Sbjct: 72  IVDIESTGG-IKNGQILEIGAVKIKNLQEIDR-FSSLV--QVKEIPENITELTGINLDMV 127

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD PS + + ++F      +++ ++AHN +FD GFI+  L       L   RI       
Sbjct: 128 KDAPSLTKVLNDF--RLFLKDSIFVAHNVRFDYGFISKALNECGFGILLNRRICTIEFAQ 185

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                                  HR+ + AL  + +      K+
Sbjct: 186 CCIESPRYKLDVLKELLGIKNAHHRALNDALAAAEIFKHCLGKL 229


>gi|241668749|ref|ZP_04756327.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877280|ref|ZP_05249990.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843301|gb|EET21715.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 482

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 3/144 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEA 59
           M +      + +D+ETTG+++  D++++  A+           F  F+  N      P A
Sbjct: 1   MFQNQT--FLFYDLETTGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPIA 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
              H I+        S      +     N      I +N               N  P  
Sbjct: 59  TITHHISIAQANTGVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPY 118

Query: 120 PSRIIDTLSIARRKHPSSRNDLNS 143
             +  +  S A      +   L  
Sbjct: 119 SHQFKNGCSRADLFPIVTCYYLFC 142


>gi|323961899|gb|EGB57498.1| exonuclease [Escherichia coli H489]
          Length = 220

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNIALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|311069195|ref|YP_003974118.1| DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942]
 gi|310869712|gb|ADP33187.1| DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942]
          Length = 208

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 72/214 (33%), Gaps = 9/214 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR +  D ET   +S  +    +G     + S      +  + P   +       LHGI 
Sbjct: 1   MRIVSIDFET--ANSSRNSACSLGMTIFENSSIVMNH-EWLIQPKQNRFHSFNTALHGID 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + ++P F  ++ E   +    N   IAHNA FD+  + + L     D  +       
Sbjct: 58  ENMVANEPRFDELWPEIKPYL--TNGLVIAHNASFDISVLRSTLDDYGLDYPEFEYTCTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185
               R         L+ L  R        + H A  DS     +++ +      ++F   
Sbjct: 116 QMAKRHWKELESYKLSFLADRINFRF---NHHNAREDSKAAMLIFLHIQEQYKALHFTEL 172

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
             + D             S L + K    + +K+
Sbjct: 173 LNHLDIKKGTLYAGGYTPSRLIKPKSKTRKPSKQ 206


>gi|220907840|ref|YP_002483151.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7425]
 gi|219864451|gb|ACL44790.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7425]
          Length = 164

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +   +    +G V + +     + +   +CP   +   E   +HGI   
Sbjct: 4   FVAIDFET--ANRAKESACAVGLVRVENLQIVQKAYY-LICPP--QPHFEFTHIHGIRWT 58

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P+F  ++SE        +    AHNA FD   ++A               I T+ 
Sbjct: 59  DVAAQPTFGDLWSELHPLIAGTDFI-AAHNAGFDRSVLHACCNSYGIPRP-AQNFICTVQ 116

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +ARR        L  +C+  G+       H AL D+   + + I   
Sbjct: 117 LARRTWSLYPTKLPDVCRFLGL---ELDHHHALSDAEACAQIVIAAT 160


>gi|168462596|ref|ZP_02696527.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195633859|gb|EDX52211.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 232

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +         + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +        + P +    +      
Sbjct: 59  ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLP-------ELPGEWICTMKLSRRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRT 153


>gi|159528144|ref|YP_001542707.1| DNA polymerase III subunit epsilon [Fluoribacter dumoffii]
 gi|159157989|dbj|BAF92678.1| DNA polymerase III subunit epsilon [Fluoribacter dumoffii]
          Length = 306

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 10/176 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + D+ET G+D+  D IIEIG +       D     +     L   G+   PE  K+ GI 
Sbjct: 47  IIDLETMGMDATQDEIIEIGMLSFSFSNEDGILGIKHTYNELNAPGKPIPPEITKITGIR 106

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E +  K    +I   F     +++   I HNA FD  F+  +  +  +  +       T
Sbjct: 107 NEDVIGK----TINWNFVLQVLKESHLIICHNAGFDRNFLELQTPQDIQKQIITLPFGCT 162

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +     K     +                  H A+ D     ++ ++      ++ 
Sbjct: 163 IKDIDWKERDYESSKLDYLNWK--LGYFYDGHRAINDCWATLNLLLQEQGAFDELK 216


>gi|15889361|ref|NP_355042.1| DNA polymerase III, epsilon subunit [Agrobacterium tumefaciens str.
           C58]
 gi|15157207|gb|AAK87827.1| DNA polymerase III, epsilon subunit [Agrobacterium tumefaciens str.
           C58]
          Length = 202

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 3/152 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      +G   + D     R  +  + P   + SP  + +HGI 
Sbjct: 1   MKTIAIDFET--ANEERGSACSVGLAWIEDGQIV-RVEERLIRPRDMRFSPFNIAVHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P F  +  EF D F+            F V   + +  R++   L     +  
Sbjct: 58  PRDVEDAPEFPEVMEEFIDDFHGATMIAHNAAFDFSVMRASFDKYRLSYPDLSYLCSVKI 117

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
                    S + ++ +   +      + ++ 
Sbjct: 118 ARHVWPHLVSHKLNVIAHHLQLRFVHHNAAED 149


>gi|38344589|emb|CAD40497.2| OSJNBa0079M09.9 [Oryza sativa Japonica Group]
 gi|116308941|emb|CAH66068.1| OSIGBa0092O07.3 [Oryza sativa Indica Group]
 gi|116309117|emb|CAH66222.1| OSIGBa0157N01.8 [Oryza sativa Indica Group]
          Length = 249

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
            D+E TGLD   DRI+EI  + + D   T R
Sbjct: 74  IDLEMTGLDITKDRILEIACI-ITDGKLTKR 103


>gi|242237928|ref|YP_002986109.1| exonuclease RNase T and DNA polymerase III [Dickeya dadantii
          Ech703]
 gi|242129985|gb|ACS84287.1| Exonuclease RNase T and DNA polymerase III [Dickeya dadantii
          Ech703]
          Length = 180

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M+ +N    I  D+E TGLD + DRIIEI 
Sbjct: 1  MVNEN--NLIWIDLEMTGLDPERDRIIEIA 28


>gi|168241502|ref|ZP_02666434.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194450291|ref|YP_002045931.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194408595|gb|ACF68814.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205339659|gb|EDZ26423.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 232

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +         + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +        + P +    +      
Sbjct: 59  ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLP-------ELPGEWICTMKLSRRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRT 153


>gi|27375179|ref|NP_766708.1| exonuclease I [Bradyrhizobium japonicum USDA 110]
 gi|27348315|dbj|BAC45333.1| exonuclease I [Bradyrhizobium japonicum USDA 110]
          Length = 468

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV--FLCPNGRKNS 56
          M  + FD ETTGL    D+I+   AV   +       F+    L P+   + 
Sbjct: 1  MSFVFFDTETTGLKRGFDQILHFAAVRTDENLNEVARFETRSRLQPHVLPHP 52


>gi|271502182|ref|YP_003335208.1| exonuclease RNase T and DNA polymerase III [Dickeya dadantii
          Ech586]
 gi|270345737|gb|ACZ78502.1| Exonuclease RNase T and DNA polymerase III [Dickeya dadantii
          Ech586]
          Length = 180

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M+ +N    I  D+E TGLD + DRIIEI 
Sbjct: 1  MVNEN--NLIWIDLEMTGLDPERDRIIEIA 28


>gi|205352416|ref|YP_002226217.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207856601|ref|YP_002243252.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|205272197|emb|CAR37055.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206708404|emb|CAR32708.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326627468|gb|EGE33811.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 232

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +         + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +        + P +    +      
Sbjct: 59  ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLP-------ELPGEWICTMKLSRRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMSLYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRT 153


>gi|229488668|ref|ZP_04382534.1| DNA polymerase III subunit epsilon [Rhodococcus erythropolis SK121]
 gi|229324172|gb|EEN89927.1| DNA polymerase III subunit epsilon [Rhodococcus erythropolis SK121]
          Length = 226

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ETTG D    RI+    V ++D S    T    L P     +  +      T+   
Sbjct: 11  AFDLETTGRDPSTARIVS-ACVAVIDGSSV-ETRTWLLDPGVDIPAGASAVHGISTEFAA 68

Query: 71  KDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFIN 107
           +    +S  + E  +  +         +A NA +D+  ++
Sbjct: 69  QHGQDYSEGYEEIREALHNSWARDHAVVAFNASYDLTVMH 108


>gi|24374384|ref|NP_718427.1| exonuclease [Shewanella oneidensis MR-1]
 gi|24348949|gb|AAN55871.1|AE015724_4 exonuclease [Shewanella oneidensis MR-1]
          Length = 181

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSK 39
          D+E TGLD   D+I+ IG V + + + 
Sbjct: 2  DLEMTGLDPFKDQILSIGLVPIENGAI 28


>gi|226197921|ref|ZP_03793495.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813373|ref|YP_002897824.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|254181036|ref|ZP_04887634.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1655]
 gi|184211575|gb|EDU08618.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1655]
 gi|225930109|gb|EEH26122.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506315|gb|ACQ98633.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           MSHR346]
          Length = 381

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EI    ++  +    T+   + P  +   P   +L GITD  +
Sbjct: 17  FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  P+F+ I    ++  +     ++AHNA FD GF
Sbjct: 74  RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106


>gi|126438667|ref|YP_001059957.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia
           pseudomallei 668]
 gi|126218160|gb|ABN81666.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 668]
          Length = 381

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EI    ++  +    T+   + P  +   P   +L GITD  +
Sbjct: 17  FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  P+F+ I    ++  +     ++AHNA FD GF
Sbjct: 74  RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106


>gi|300779659|ref|ZP_07089515.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
 gi|300533769|gb|EFK54828.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
          Length = 959

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ TTG    +DRI+E+G V L    +   T++  + PN          +H +T  
Sbjct: 7   FAVIDVVTTGFG-GSDRIVEVGVVLLDQQLREQGTWETLVQPNR---DIATCHVHKLTAT 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            LK+ P++  +  E            +AHNA F+  F
Sbjct: 63  HLKNAPTWEEVAPELAQVIRG--RIGVAHNASFEKRF 97


>gi|292898154|ref|YP_003537523.1| oligoribonuclease [Erwinia amylovora ATCC 49946]
 gi|291198002|emb|CBJ45104.1| oligoribonuclease [Erwinia amylovora ATCC 49946]
          Length = 187

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N    I  D+E TGLD + DRIIEI 
Sbjct: 1  MTANANNLIWIDLEMTGLDPERDRIIEIA 29


>gi|170769422|ref|ZP_02903875.1| exodeoxyribonuclease X [Escherichia albertii TW07627]
 gi|170121746|gb|EDS90677.1| exodeoxyribonuclease X [Escherichia albertii TW07627]
          Length = 220

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVVDGKIV-NPMSHLVRPD-RPITPQAMAIHRITESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|206561254|ref|YP_002232019.1| oligoribonuclease [Burkholderia cenocepacia J2315]
 gi|198037296|emb|CAR53218.1| oligoribonuclease [Burkholderia cenocepacia J2315]
          Length = 206

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGLD  NDRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43


>gi|237748400|ref|ZP_04578880.1| exonuclease family protein [Oxalobacter formigenes OXCC13]
 gi|229379762|gb|EEO29853.1| exonuclease family protein [Oxalobacter formigenes OXCC13]
          Length = 327

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE 33
           +  D ETTGL S  D IIE+G V+
Sbjct: 79  VFLDTETTGLSSDMDVIIELGLVK 102


>gi|254295577|ref|ZP_04963035.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           406e]
 gi|157805524|gb|EDO82694.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           406e]
          Length = 381

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EI    ++  +    T+   + P  +   P   +L GITD  +
Sbjct: 17  FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  P+F+ I    ++  +     ++AHNA FD GF
Sbjct: 74  RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106


>gi|107022156|ref|YP_620483.1| oligoribonuclease [Burkholderia cenocepacia AU 1054]
 gi|116689101|ref|YP_834724.1| oligoribonuclease [Burkholderia cenocepacia HI2424]
 gi|170732389|ref|YP_001764336.1| oligoribonuclease [Burkholderia cenocepacia MC0-3]
 gi|254245960|ref|ZP_04939281.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia
          cenocepacia PC184]
 gi|123371764|sp|Q1BXZ5|ORN_BURCA RecName: Full=Oligoribonuclease
 gi|166215751|sp|A0K5Q4|ORN_BURCH RecName: Full=Oligoribonuclease
 gi|105892345|gb|ABF75510.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
          cenocepacia AU 1054]
 gi|116647190|gb|ABK07831.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
          cenocepacia HI2424]
 gi|124870736|gb|EAY62452.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia
          cenocepacia PC184]
 gi|169815631|gb|ACA90214.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
          cenocepacia MC0-3]
          Length = 206

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGLD  NDRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43


>gi|167846824|ref|ZP_02472332.1| possible DNA polymerase/helicase [Burkholderia pseudomallei B7210]
          Length = 348

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EI    ++  +    T+   + P  +   P   +L GITD  +
Sbjct: 17  FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  P+F+ I    ++  +     ++AHNA FD GF
Sbjct: 74  RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106


>gi|167739715|ref|ZP_02412489.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 14]
          Length = 323

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EI    ++  +    T+   + P  +   P   +L GITD  +
Sbjct: 17  FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  P+F+ I    ++  +     ++AHNA FD GF
Sbjct: 74  RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106


>gi|153839349|ref|ZP_01992016.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus
          AQ3810]
 gi|149747140|gb|EDM58128.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus
          AQ3810]
          Length = 209

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 5  NKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC 49
          +K   +  D ETT LD     ++ I A +++ +   T++ F+V L 
Sbjct: 26 HKTEFVSLDCETTSLDPNRAELVTIAATKIIDNRILTSQPFEVRLR 71


>gi|16760829|ref|NP_456446.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16765220|ref|NP_460835.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29141480|ref|NP_804822.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62180453|ref|YP_216870.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|167993853|ref|ZP_02574946.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168233692|ref|ZP_02658750.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168259853|ref|ZP_02681826.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168820696|ref|ZP_02832696.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194469318|ref|ZP_03075302.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197265660|ref|ZP_03165734.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|200390618|ref|ZP_03217229.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|213419003|ref|ZP_03352069.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
 gi|213426806|ref|ZP_03359556.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213648159|ref|ZP_03378212.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|213851907|ref|ZP_03381439.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|224583619|ref|YP_002637417.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|238912063|ref|ZP_04655900.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289829019|ref|ZP_06546715.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25511843|pir||AB0741 exodeoxyribonuclease X (EC 3.1.11.-) [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16420413|gb|AAL20794.1| DNA exonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16503126|emb|CAD05629.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29137107|gb|AAO68671.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62128086|gb|AAX65789.1| DNA exonuclease X, degrades ss and ds DNA with 3'-5' polarity
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194455682|gb|EDX44521.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197243915|gb|EDY26535.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|199603063|gb|EDZ01609.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205328180|gb|EDZ14944.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205332278|gb|EDZ19042.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205342565|gb|EDZ29329.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205351180|gb|EDZ37811.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|224468146|gb|ACN45976.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261247049|emb|CBG24868.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993856|gb|ACY88741.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158399|emb|CBW17906.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912871|dbj|BAJ36845.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320085616|emb|CBY95394.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321224521|gb|EFX49584.1| Exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322714928|gb|EFZ06499.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323130162|gb|ADX17592.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332988772|gb|AEF07755.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 232

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +         + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +        + P +    +      
Sbjct: 59  ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLP-------ELPGEWICTMKLSRRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRT 153


>gi|76808562|ref|YP_334417.1| DNA polymerase/helicase [Burkholderia pseudomallei 1710b]
 gi|126455164|ref|YP_001067249.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia
           pseudomallei 1106a]
 gi|134278018|ref|ZP_01764733.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 305]
 gi|217420886|ref|ZP_03452391.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 576]
 gi|242315973|ref|ZP_04814989.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106b]
 gi|254195634|ref|ZP_04902061.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei S13]
 gi|254261397|ref|ZP_04952451.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1710a]
 gi|76578015|gb|ABA47490.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 1710b]
 gi|126228806|gb|ABN92346.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106a]
 gi|134251668|gb|EBA51747.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 305]
 gi|169652380|gb|EDS85073.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei S13]
 gi|217396298|gb|EEC36315.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 576]
 gi|242139212|gb|EES25614.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106b]
 gi|254220086|gb|EET09470.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1710a]
          Length = 381

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EI    ++  +    T+   + P  +   P   +L GITD  +
Sbjct: 17  FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  P+F+ I    ++  +     ++AHNA FD GF
Sbjct: 74  RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106


>gi|269986750|gb|EEZ93030.1| Exonuclease RNase T and DNA polymerase III [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 199

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 7/122 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV DIET+G    N  I+ IGAV+  +     R F         K   E         + 
Sbjct: 2   IVVDIETSGTSPYNHSILSIGAVDFSN---PERQFYQECQIEKDKEYTEEALNVNGFKKE 58

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE----WIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
               P   ++ S   +F              HN  FD  F+N   ++ N +     R+ID
Sbjct: 59  ELTDPKKKTLESVLNEFIVWIQPVKDKTIGGHNVNFDANFLNYSFKKYNINFSFGHRVID 118

Query: 126 TL 127
           T 
Sbjct: 119 TH 120


>gi|251788035|ref|YP_003002756.1| Exonuclease RNase T and DNA polymerase III [Dickeya zeae Ech1591]
 gi|247536656|gb|ACT05277.1| Exonuclease RNase T and DNA polymerase III [Dickeya zeae Ech1591]
          Length = 180

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M+ +N    I  D+E TGLD + DRIIEI 
Sbjct: 1  MVNEN--NLIWIDLEMTGLDPERDRIIEIA 28


>gi|194442926|ref|YP_002041143.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194401589|gb|ACF61811.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 232

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +         + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +        + P +    +      
Sbjct: 59  ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLP-------ELPGEWICTMKLSRRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRT 153


>gi|167920040|ref|ZP_02507131.1| possible DNA polymerase/helicase [Burkholderia pseudomallei BCC215]
          Length = 346

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EI    ++  +    T+   + P  +   P   +L GITD  +
Sbjct: 17  FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  P+F+ I    ++  +     ++AHNA FD GF
Sbjct: 74  RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106


>gi|167912066|ref|ZP_02499157.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 112]
          Length = 343

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EI    ++  +    T+   + P  +   P   +L GITD  +
Sbjct: 17  FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  P+F+ I    ++  +     ++AHNA FD GF
Sbjct: 74  RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106


>gi|167903799|ref|ZP_02491004.1| possible DNA polymerase/helicase [Burkholderia pseudomallei NCTC
           13177]
          Length = 349

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EI    ++  +    T+   + P  +   P   +L GITD  +
Sbjct: 17  FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  P+F+ I    ++  +     ++AHNA FD GF
Sbjct: 74  RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106


>gi|167895415|ref|ZP_02482817.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 7894]
          Length = 350

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EI    ++  +    T+   + P  +   P   +L GITD  +
Sbjct: 17  FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  P+F+ I    ++  +     ++AHNA FD GF
Sbjct: 74  RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106


>gi|167825322|ref|ZP_02456793.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 9]
          Length = 352

 Score = 46.5 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EI    ++  +    T+   + P  +   P   +L GITD  +
Sbjct: 17  FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  P+F+ I    ++  +     ++AHNA FD GF
Sbjct: 74  RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106


>gi|295835840|ref|ZP_06822773.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
 gi|197698852|gb|EDY45785.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
          Length = 239

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          FD+ETTG D ++DR++    + L       +T    L P G +   EA  +HGI 
Sbjct: 11 FDLETTGTDVEHDRVVTAAVIRLDASGAVAQTRTWLLDP-GIEIPAEATAIHGIP 64


>gi|217980141|ref|YP_002364191.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
 gi|217508312|gb|ACK55097.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
          Length = 201

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 12/147 (8%)

Query: 11  VFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + D ETTGL    D   ++EI  ++              + P+G     EA+ +HGITD 
Sbjct: 24  ILDTETTGL---GDDAEVVEIAVIDCAGNVL----LDTLVRPSG-PVPAEAVAIHGITDA 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P++S I   F      +      ++ +FD   I+   +R           +    
Sbjct: 76  MLADAPTWSEIHDRFCCLVEGRQVV--IYSREFDARLISQTARRYGLPAPKGFDQVLDDD 133

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155
                  +         +  G     +
Sbjct: 134 RIHCAMHAYAAFRGEWSEEKGRYRWQK 160


>gi|167720732|ref|ZP_02403968.1| possible DNA polymerase/helicase [Burkholderia pseudomallei DM98]
          Length = 334

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG  +   RI EI    ++  +    T+   + P  +   P   +L GITD  +
Sbjct: 17  FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +  P+F+ I    ++  +     ++AHNA FD GF
Sbjct: 74  RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106


>gi|310765341|gb|ADP10291.1| Oligoribonuclease [Erwinia sp. Ejp617]
          Length = 187

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+ + DRIIEI 
Sbjct: 11 IDLEMTGLNPEQDRIIEIA 29


>gi|292489630|ref|YP_003532520.1| oligoribonuclease [Erwinia amylovora CFBP1430]
 gi|291555067|emb|CBA23161.1| oligoribonuclease [Erwinia amylovora CFBP1430]
 gi|312173806|emb|CBX82060.1| oligoribonuclease [Erwinia amylovora ATCC BAA-2158]
          Length = 193

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 17 IDLEMTGLDPERDRIIEIA 35


>gi|209550157|ref|YP_002282074.1| exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209535913|gb|ACI55848.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 196

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 5/158 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      +G   + +   T R  +  + P   + S   + +HGI 
Sbjct: 1   MKTIAIDFET--ANEQRGSACSVGLAWIEEGRVT-RVEERLIRPRDMRFSGMNIAIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D P F  +  EF +  +       AHNA FD     A L    +   + + +   
Sbjct: 58  PEHVEDAPEFPEVMDEFHEDISGATMI--AHNAAFDFSVWRASLDLYRQSYPELTYLCSL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
               R       + LN + +  G+   H +     +  
Sbjct: 116 KMAQRIWPHFLSHRLNLIAEHLGLRFVHHNAAEDAVVC 153


>gi|253690114|ref|YP_003019304.1| Exonuclease RNase T and DNA polymerase III [Pectobacterium
          carotovorum subsp. carotovorum PC1]
 gi|251756692|gb|ACT14768.1| Exonuclease RNase T and DNA polymerase III [Pectobacterium
          carotovorum subsp. carotovorum PC1]
          Length = 180

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M+ +N    I  D+E TGL+ + DRIIEI 
Sbjct: 1  MVDEN--NLIWIDLEMTGLNPERDRIIEIA 28


>gi|108760097|ref|YP_630122.1| exonuclease [Myxococcus xanthus DK 1622]
 gi|108463977|gb|ABF89162.1| exonuclease [Myxococcus xanthus DK 1622]
          Length = 219

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNG--RKNSPEALKLHGITD 67
            D+ETTGLD+    ++E+  + +   S      ++  + P      +           +
Sbjct: 33 FVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEARVKPTRLADAHPEALAVCGYSDE 92

Query: 68 EFLKDKP 74
          E+    P
Sbjct: 93 EWRDALP 99


>gi|329896219|ref|ZP_08271397.1| Ribonuclease T [gamma proteobacterium IMCC3088]
 gi|328921890|gb|EGG29257.1| Ribonuclease T [gamma proteobacterium IMCC3088]
          Length = 211

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G +++ D ++E+ A  V +    +   + T    + P  G      AL+  G
Sbjct: 20  VIIDVETGGFNAQTDALLEVAATIVRMEPDGELYVHETVHHNVVPFEGANLEASALEFTG 79

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I       +         S      +     N   A  + HNA FD GFINA ++R    
Sbjct: 80  IDPYHPFREALSEADALESIFKAIRKEIKSTNCTRAVLVGHNAHFDAGFINAAVERTGLK 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C + GI   +++ H A  D+   + ++  ++ 
Sbjct: 140 RNPFHPFSYFDTATLAGLAFGQTVLAKACLQAGIEFDNKAAHSAAYDADRTAHLFCNIVN 199

Query: 177 GGSQIN 182
              Q  
Sbjct: 200 IWRQCG 205


>gi|171909847|ref|ZP_02925317.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Verrucomicrobium spinosum DSM 4136]
          Length = 200

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 7/122 (5%)

Query: 11  VFDIETT----G-LDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLH 63
           + D+E T    G +      IIEIGAV L   + +T   F  F+ P      +P   KL 
Sbjct: 17  IIDLEATCCDRGKVPRDEMEIIEIGAVLLDGKTLETVSEFGTFIKPVRHPVLTPFCTKLT 76

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            IT   +   P F    ++   +         +    +D G    +    +         
Sbjct: 77  TITQAEVDAAPMFPEALAKLKAWLEPYPDCMFSSWGAYDKGQFQLDCAFHDLPYPFSEAH 136

Query: 124 ID 125
           ++
Sbjct: 137 LN 138


>gi|150018815|ref|YP_001311069.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905280|gb|ABR36113.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
          Length = 255

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 66/199 (33%), Gaps = 2/199 (1%)

Query: 25  RIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            II+IGA++L +  +   TF   + P   +   P    L  IT + +    +F ++   F
Sbjct: 40  EIIQIGAIKLDNNFQEVSTFNSLVKPTLYKTIHPYVENLTKITYDKVSSCKNFINVHKAF 99

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLSIARRKHPSSRNDLN 142
            +F  + +                       +   +     I   +    K P +     
Sbjct: 100 LEFIGDDDVLLCVWGVGDIKELYRNLGFYNLSTSYISKYIDIQKYASKYLKAPKNSRIGL 159

Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPN 202
                      +   H AL D++  S+++ ++     +      +   R  + ++     
Sbjct: 160 RNAVEILNIPIYSEFHDALNDAYYTSEIFKRIYNKYMKPETYVPSPAKRTTEPKEVIDNE 219

Query: 203 ISLLKRDKPLFTRITKEEL 221
             L + +K     +TK+E 
Sbjct: 220 ALLKQFEKMYNRELTKDEK 238


>gi|293393221|ref|ZP_06637536.1| oligoribonuclease [Serratia odorifera DSM 4582]
 gi|291424367|gb|EFE97581.1| oligoribonuclease [Serratia odorifera DSM 4582]
          Length = 181

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MTGNENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|253563502|ref|ZP_04840959.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5]
 gi|251947278|gb|EES87560.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5]
          Length = 175

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 8/175 (4%)

Query: 9   KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
               D ET TG       +   G V + D   T+  +   + P   +     + +HGIT 
Sbjct: 5   FAAIDFETATGYMESACAV---GIVTVTDGEITDE-YYSLIQPPENEYWRANMLVHGITP 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              +  P F +I+ E                   +V   +  +  ++ D L      +  
Sbjct: 61  GMTESLPGFHAIYPEVKKRLQGNVVVAHNEQFDRNVLKNSMRMYGLDYDELSLPERWECT 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
               R       +L++ C+R G        H AL D+   + +Y+  +     ++
Sbjct: 121 CRIYRSLGYKPVNLSACCEREG---IELKHHEALSDARGCAKLYLNFLEKYRPLS 172


>gi|315092205|gb|EFT64181.1| conserved domain protein [Propionibacterium acnes HL110PA4]
          Length = 88

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
          ++ D ETT LD    RIIEI  ++    +         + P G     EA  +H I+ + 
Sbjct: 17 VILDTETTDLD---GRIIEISIIDAATGTVLMN---QLINPQGAPIYAEARTVHHISPDD 70

Query: 70 LKDKPSFSSIFSEFWDFF 87
          L   P+F+ ++    D  
Sbjct: 71 LATAPTFTQVWPRLEDVV 88


>gi|167586566|ref|ZP_02378954.1| oligoribonuclease [Burkholderia ubonensis Bu]
          Length = 206

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGLD  NDRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43


>gi|259907169|ref|YP_002647525.1| Oligoribonuclease [Erwinia pyrifoliae Ep1/96]
 gi|224962791|emb|CAX54246.1| Oligoribonuclease [Erwinia pyrifoliae Ep1/96]
 gi|283476976|emb|CAY72863.1| oligoribonuclease [Erwinia pyrifoliae DSM 12163]
          Length = 193

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N    I  D+E TGL+ + DRIIEI 
Sbjct: 7  MTANANNLIWIDLEMTGLNPEQDRIIEIA 35


>gi|53712466|ref|YP_098458.1| DNA polymerase III subunit epsilon [Bacteroides fragilis YCH46]
 gi|60680667|ref|YP_210811.1| putative exonuclease [Bacteroides fragilis NCTC 9343]
 gi|265762628|ref|ZP_06091196.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
 gi|52215331|dbj|BAD47924.1| probable DNA polymerase III epsilon chain [Bacteroides fragilis
           YCH46]
 gi|60492101|emb|CAH06864.1| putative exonuclease [Bacteroides fragilis NCTC 9343]
 gi|263255236|gb|EEZ26582.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
          Length = 175

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 8/175 (4%)

Query: 9   KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
               D ET TG       +   G V + D   T+  +   + P   +     + +HGIT 
Sbjct: 5   FAAIDFETATGYMESACAV---GIVTVTDGEITDE-YYSLIQPPENEYWRANMLVHGITP 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              +  P F +I+ E                   +V      +  ++ D L      +  
Sbjct: 61  GMTESLPGFHAIYPEVKKRLQGNVVVAHNEQFDRNVLKNTMRMYGLDYDELSLPERWECT 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
               R       +L++ C+R G        H AL D+   + +Y+  +     ++
Sbjct: 121 CRIYRSLGYKPVNLSACCEREG---IELKHHEALSDARGCAKLYLNFLEKYRPLS 172


>gi|295089927|emb|CBK76034.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Clostridium cf. saccharolyticum K10]
          Length = 347

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 10/176 (5%)

Query: 9   KIVFDIE----TTGLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            IV D+E    + G ++  DR    IIEIGAV+L +  +    F   + P   +     +
Sbjct: 4   YIVLDLEWNQSSGGREASIDRLPFEIIEIGAVKLDENLRIVSEFSRLVRPQVYRTLHYKI 63

Query: 61  KLHGI--TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                   ++  ++   F +   EF+D+           +        N     +     
Sbjct: 64  SEVTHLTAEQLEREGQKFETAVKEFFDWCGNDCRFCTWGSMDLTELQRNMVYHGMELPFQ 123

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            P    D   I      +++ +              R  H AL D+     V  KM
Sbjct: 124 KPLYYFDLQKIYSLIQGNTKRESLDTAVLEMGIEEERPFHRALDDAWYTGLVMGKM 179


>gi|161613571|ref|YP_001587536.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|198244129|ref|YP_002215209.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|161362935|gb|ABX66703.1| hypothetical protein SPAB_01291 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197938645|gb|ACH75978.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326622957|gb|EGE29302.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 232

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +         + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +        + P +    +      
Sbjct: 59  ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLP-------ELPGEWICTMKLSRRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPPGLHYHRALYDCYITAALLIDIMRT 153


>gi|331006083|ref|ZP_08329419.1| Ribonuclease T [gamma proteobacterium IMCC1989]
 gi|330420120|gb|EGG94450.1| Ribonuclease T [gamma proteobacterium IMCC1989]
          Length = 201

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP---NGRKNSPEALKL 62
           +V D+ET G +S+ D ++E+ A  + + D      ++ ++  + P      + S      
Sbjct: 11  VVIDVETGGFNSRTDALLEVSAATLAMDDEGILSIDQLYEYHVTPFEGANIEQSALDFTG 70

Query: 63  HGITDEFLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
             + +      P          +  +     +   A  +AHNA FD+GF+N   +R    
Sbjct: 71  IDLENPDRNAIPEEDMLNELFRVIRKAVKRNDCTRAIMVAHNAHFDLGFVNEAAERCGMK 130

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L   C+   I  S++  H A  D+   ++++  ++ 
Sbjct: 131 RNPFHPFSCMDTATLSGLAFGHTVLAQACQLAKIGFSNKEAHAASYDTRKTAELFCVIVN 190

Query: 177 GGSQIN 182
              ++ 
Sbjct: 191 RWQELG 196


>gi|328464770|gb|EGF36087.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus MTCC
           5462]
          Length = 140

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      +  V +        +F   + P  +   P+ +++HGIT
Sbjct: 1   MDFIAMDFET--ANRKRASACSLALVVVQQNRVV-DSFYTLINPQMQ-FDPQNIRIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            + ++++P+F          F        AHNA FDV  
Sbjct: 57  PDMVQNQPTF-DRVWPHIQMFYTPGRIVTAHNAPFDVSV 94


>gi|320528160|ref|ZP_08029325.1| DNA polymerase III subunit epsilon domain protein [Solobacterium
           moorei F0204]
 gi|320131508|gb|EFW24073.1| DNA polymerase III subunit epsilon domain protein [Solobacterium
           moorei F0204]
          Length = 186

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 71/178 (39%), Gaps = 10/178 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65
           + +  D ET   +++   +  +G   + D       +   + P       SP  +++HGI
Sbjct: 3   KIVAIDFET--ANNQMASVCSVGVAVMEDGVII-DHYYSLIKPEENVGYFSPYNIRIHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   +K  P+FS I+SE   +F +  A  +AHNA+FD+  +        K          
Sbjct: 60  TARDVKGAPTFSEIYSELTGYFED--AVIVAHNARFDMSCLKQTCLNTGKKIPVLEYFDT 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                R       + LN +C+  G        H AL D++   ++ + +M    + + 
Sbjct: 118 VELCKRVFSNLEHHRLNDVCEYIG---IELDHHNALSDANGCLEIVMAVMNLIGEYDI 172


>gi|313681812|ref|YP_004059550.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum
          kujiense DSM 16994]
 gi|313154672|gb|ADR33350.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum
          kujiense DSM 16994]
          Length = 232

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
          I  D ETTGL++K DRI  +G +        +      + P G+K  P +  +H IT+E 
Sbjct: 2  IFLDTETTGLEAK-DRICALGMIT------EDEAHYELINP-GKKIPPSSSAIHHITNEM 53

Query: 70 LKDKPSF 76
          +KD P+F
Sbjct: 54 VKDAPAF 60


>gi|262273303|ref|ZP_06051118.1| putative exonuclease [Grimontia hollisae CIP 101886]
 gi|262222676|gb|EEY73986.1| putative exonuclease [Grimontia hollisae CIP 101886]
          Length = 198

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 13/174 (7%)

Query: 7   MR-----KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           MR      I  D ETTGL  ++  I E  A++              + P  +    EA  
Sbjct: 18  MRDVLANAITIDTETTGLG-EDAEICEFAAIDGRGNVLI----NTLIKP-SKPIPAEATA 71

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT++ ++  P++  +                 +NA++D+  I       +       
Sbjct: 72  IHGITNDMVETAPTWLEVEGMIAGLLVS--RPVAIYNAEYDIRVIWQTSMISHGKDRAVP 129

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             ++    A              C        H+    A  +   + +   + +
Sbjct: 130 DELERSINATCIMLEYAEYRGEWCDSRHQYRWHKLTAAAAHEGVTVEENAHRAL 183


>gi|326693810|ref|ZP_08230815.1| DNA polymerase III, epsilon subunit [Leuconostoc argentinum KCTC
           3773]
          Length = 177

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 5/152 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + +    + +    +      +  F   + P     S     +HGI 
Sbjct: 1   MNFVAMDFET--ANHEKHSAVSMALAVVRQNEVVDE-FYSLIQPET-YFSARNTAIHGIR 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ +   P F             ++   +AHNA FD G +   L     +      +   
Sbjct: 57  EQDVAQAPKF-PEIWAQVSPLFTEDKLVVAHNAPFDHGVLQGTLAYYGIEAPHYMLLDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            S  +       + LN++ +  GIT+ H    
Sbjct: 116 RSSRQLFPHFRNHKLNTVAENLGITLDHHHNA 147


>gi|227504454|ref|ZP_03934503.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC
           6940]
 gi|227199102|gb|EEI79150.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC
           6940]
          Length = 214

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 3/167 (1%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             D+ETT LD +   I+ IG V +            V +         +++ +H +T + 
Sbjct: 29  AVDMETTSLDPREGAIVSIGWVPINGGVIDLGGADYVLIKGATAGQIEQSVHIHMLTQDV 88

Query: 70  LKDKPSFSSIFSEFWDFFNEQN--AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +    +     S   +    +   A + A    F             +  +  +  ++  
Sbjct: 89  VDAGVAEKEGISRLREALQGRALLAHFAALEVGFLKAACKRIYGAAPRLDVVDTFALERR 148

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            + R        DL     R    + +   H AL D+   +++++ M
Sbjct: 149 HMERMATYPRGEDLRLARVRQRYGLPNYGNHNALSDAQACAELFLAM 195


>gi|227510619|ref|ZP_03940668.1| DNA-directed DNA polymerase III [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190271|gb|EEI70338.1| DNA-directed DNA polymerase III [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 177

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 10/176 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET   ++K      +    + +   T+  F   + P     S   + +HGI 
Sbjct: 1   MNFAAMDFET--ANAKRASACSLALAIVRNNQVTHE-FYSLINPET-DFSWRNINVHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + + P+F     +        N   +AHNA FD   +   L+R +        +   
Sbjct: 57  KQDVANAPTF-PELWDHIAPLFTANKLVVAHNASFDNSVLKRTLERYDLLLPHYLTLDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +  +       + LN++C    I + H         +         ++    Q  
Sbjct: 116 KTSKQFYPQMVNHKLNTVCDELHIELEHHHNALDDSVACANI-----LLTQQQQFG 166


>gi|255690157|ref|ZP_05413832.1| exonuclease [Bacteroides finegoldii DSM 17565]
 gi|260624444|gb|EEX47315.1| exonuclease [Bacteroides finegoldii DSM 17565]
          Length = 184

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 7/167 (4%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR     D ET   + K   I  +G V + +    N+ +   + P     +     +HG+
Sbjct: 1   MRNFAAIDFET--ANGKRTSICSVGVVIVKEGKIINKIY-RLIRPAPNYYTQWTTAVHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T +   +   F  +++E     +      +AHN+ FD G + A  +              
Sbjct: 58  TYDDTIEADDFPEVWAEIKPLIDG--LPLVAHNSPFDEGCLRAVHELYGMTYPPYKFYCT 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             +  +       N                + H AL D+   + + +
Sbjct: 116 CRASRKVFGKELPNHQLHTVAAR-CGYDLTNHHHALADAEACAQIAL 161


>gi|157145382|ref|YP_001452701.1| exodeoxyribonuclease X [Citrobacter koseri ATCC BAA-895]
 gi|157082587|gb|ABV12265.1| hypothetical protein CKO_01122 [Citrobacter koseri ATCC BAA-895]
          Length = 220

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 60/167 (35%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++            + P+ R  SP+A+ +H I++  +
Sbjct: 4   VIDTETCGL---QGGIVEIASVDVVAGRIV-NPMSHLVRPD-RPISPQAMAIHRISESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I           +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDII-----PLYHGSEWYVAHNASFDRRVLPEMPGEWICT-------MKLSRRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|116070417|ref|ZP_01467686.1| Exonuclease [Synechococcus sp. BL107]
 gi|116065822|gb|EAU71579.1| Exonuclease [Synechococcus sp. BL107]
          Length = 285

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELL 35
          + D ETTGL+ +N   +E+GA+   
Sbjct: 58 IIDTETTGLEPENHCCVEVGAILFD 82


>gi|304396962|ref|ZP_07378842.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. aB]
 gi|308188276|ref|YP_003932407.1| oligoribonuclease [Pantoea vagans C9-1]
 gi|304355758|gb|EFM20125.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. aB]
 gi|308058786|gb|ADO10958.1| oligoribonuclease [Pantoea vagans C9-1]
          Length = 182

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M   N+   I  D+E TGLD  +DRIIEI 
Sbjct: 1  MATGNEQNLIWIDLEMTGLDPTHDRIIEIA 30


>gi|291087532|ref|ZP_06346731.2| exonuclease family protein [Clostridium sp. M62/1]
 gi|291074686|gb|EFE12050.1| exonuclease family protein [Clostridium sp. M62/1]
          Length = 350

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 10/176 (5%)

Query: 9   KIVFDIE----TTGLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            IV D+E    + G ++  DR    IIEIGAV+L +  +    F   + P   +     +
Sbjct: 7   YIVLDLEWNQSSGGREASIDRLPFEIIEIGAVKLDENLRIVSEFSRLVRPQVYRTLHYKI 66

Query: 61  KLHGI--TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                   ++  ++   F +   EF+D+           +        N     +     
Sbjct: 67  SEVTHLTAEQLEREGQKFETAVKEFFDWCGNDCRFCTWGSMDLTELQRNMVYHGMELPFQ 126

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            P    D   I      +++ +              R  H AL D+     V  KM
Sbjct: 127 KPLYYFDLQKIYSLIQGNTKRESLDTAVLEMGIEEERPFHRALDDAWYTGLVMGKM 182


>gi|104780960|ref|YP_607458.1| exonuclease [Pseudomonas entomophila L48]
 gi|95109947|emb|CAK14652.1| putative exonuclease [Pseudomonas entomophila L48]
          Length = 183

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 5/113 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E TT   G       IIEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLVIDLEATTDDGGWPVTEMEIIEIGASLVTREGREVDHFQRFVRPRRRPQLTPFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            I+   + +   FS ++ +F  +     A+  A  +  D        +     
Sbjct: 64  HISQADVDNATPFSEVWGQFERWLVNHQAQLQAWVSWGDYDRKQLLQEWQVHH 116


>gi|34498401|ref|NP_902616.1| DNA polymerase III subunit epsilon [Chromobacterium violaceum
          ATCC 12472]
 gi|34104255|gb|AAQ60614.1| probable DNA polymerase III [Chromobacterium violaceum ATCC
          12472]
          Length = 202

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 9  KIV-FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51
          ++V  D ETT L+     ++ +GAV+L  D    +    + + P+
Sbjct: 29 EVVSLDCETTSLNVSEAELLSVGAVKLRGDRILHSEALYLLVKPD 73


>gi|87121437|ref|ZP_01077326.1| DNA polymerase III subunit epsilon [Marinomonas sp. MED121]
 gi|86163280|gb|EAQ64556.1| DNA polymerase III subunit epsilon [Marinomonas sp. MED121]
          Length = 242

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I  D+ETTGL S+ D I+ +G+V +     +   +    + P G   S +++ +H +T  
Sbjct: 56  IALDLETTGLKSQKDTIVSVGSVAMNAKRIRCASSNYWVVNP-GAPLSAQSITIHELTHS 114

Query: 69  FLKDKPSFSSIFSEFWDFF 87
            ++  P  S  F    D  
Sbjct: 115 DVEQAPPLSRYFEAILDAL 133


>gi|227487300|ref|ZP_03917616.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227542721|ref|ZP_03972770.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227092726|gb|EEI28038.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227181487|gb|EEI62459.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 312

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 47/143 (32%), Gaps = 5/143 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I   I+TTGL     RI+ I AV          TF   + P      P    LHG+   
Sbjct: 5   FIALTIQTTGLHPSTARIVTIDAVTFDAEGTPVDTFFTMVNP---VTDPGPRHLHGVPRA 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++    F     +     +      I HNA    GFI +E +R  K             
Sbjct: 62  EVEAARPFGHFLKKLCTLLDG--RTLITHNAPQTWGFIVSESKRTLKARRRKRGGRRRRG 119

Query: 129 IARRKHPSSRNDLNSLCKRYGIT 151
           +     P +  D     +R GI 
Sbjct: 120 VGHVPRPVAVVDTLGAARREGIF 142


>gi|254252896|ref|ZP_04946214.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia dolosa
          AUO158]
 gi|124895505|gb|EAY69385.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia dolosa
          AUO158]
          Length = 207

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGLD  NDRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43


>gi|127510985|ref|YP_001092182.1| DNA polymerase III subunit epsilon [Shewanella loihica PV-4]
 gi|126636280|gb|ABO21923.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica
           PV-4]
          Length = 239

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63
           D ETTGL+   D I+ IG V         NR     + P  +      +   
Sbjct: 53  DFETTGLNVDKDDIVSIGTVPFTLRRIFLNRAQHWTVRPREQLAEESVIIHG 104


>gi|71281998|ref|YP_270147.1| ribonuclease T [Colwellia psychrerythraea 34H]
 gi|71147738|gb|AAZ28211.1| ribonuclease T [Colwellia psychrerythraea 34H]
          Length = 231

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 72/197 (36%), Gaps = 14/197 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-----RTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G +S+ D ++E+ A  L     T       T Q  + P  G    P+AL+  
Sbjct: 34  VVIDVETAGFNSQTDALLELAASVLHLDEDTGDFSIDETIQFNIEPFEGANLEPKALEFT 93

Query: 64  GITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           GI             +       +  +       Q A  +AHNA FD+GF+NA  +R   
Sbjct: 94  GIDPTNPLRGAVDEDEALKDLFKLVRKKMKVAGCQRAIIVAHNAAFDLGFLNAATERCKI 153

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   +   +         +  L   C    I  ++   H AL D+   ++++  ++
Sbjct: 154 KRSPFHSFVSFDTTTLAGLALGQTVLAKACIAAKIDFNNSEAHSALYDTEKTAELFCHIV 213

Query: 176 VGGSQINFGFKTNEDRF 192
                +       E+  
Sbjct: 214 NKWRALGGWPIAVEETE 230


>gi|13242597|ref|NP_077611.1| EsV-1-126 [Ectocarpus siliculosus virus 1]
 gi|13177400|gb|AAK14544.1|AF204951_126 EsV-1-126 [Ectocarpus siliculosus virus 1]
          Length = 206

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 66/197 (33%), Gaps = 22/197 (11%)

Query: 7   MRKIVFDIETTGLDSKN-----------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M ++ FD+ETTGL  +             R++ I  V L D             P     
Sbjct: 1   MPELFFDVETTGLPPRKANPETFEQYDSCRVVSIAWV-LRDEKTVYSQRYSVTDPGIADE 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD----------VGF 105
           +  A  +HGI+ E +    + + +    +    +++ + +AHN  FD          +G 
Sbjct: 60  NIGAEFVHGISREVMDRYGNATKVVLSDFMADVDRSDKIVAHNLDFDRSVVSAELFRMGS 119

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            +   + ++   L   +    L      + S +         +       + H A+ D  
Sbjct: 120 SDDARRLMSFKSLCTMKSTTNLVRIPNSYGSYKWPKLEELHEFLFGHVFENAHHAMCDVD 179

Query: 166 LLSDVYIKMMVGGSQIN 182
            +   Y  ++   +   
Sbjct: 180 AMVKCYFTLLEKHTSSK 196


>gi|262382001|ref|ZP_06075139.1| exonuclease [Bacteroides sp. 2_1_33B]
 gi|262297178|gb|EEY85108.1| exonuclease [Bacteroides sp. 2_1_33B]
          Length = 192

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 74/183 (40%), Gaps = 19/183 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGI 65
           M+ + FD+ETTG+    + + +I   E++    T  +F   +CP+ +     EAL++  +
Sbjct: 1   MKLLFFDLETTGIKYWRNGVHQISG-EIVIDGVTKESFNFNVCPHPQCEIEEEALRICNV 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-----------------A 108
           + E ++  P    ++ +F +  ++   ++   +  F VG+ N                  
Sbjct: 60  SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQNGDH 119

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                         ++ T  + R++H  +     ++ +  GI I     H A  D  L  
Sbjct: 120 YFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLTK 179

Query: 169 DVY 171
           ++Y
Sbjct: 180 EIY 182


>gi|167041229|gb|ABZ05986.1| putative exonuclease [uncultured marine microorganism
           HF4000_001N02]
          Length = 299

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 8/97 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCPNGRKNSPEALKLHGITDEF 69
           FD+ETTGLD++ DRI++     L+              + P  R     A ++HGI++E 
Sbjct: 42  FDLETTGLDARKDRIVQYA---LIGSDVDGSHINLASLVDP-RRGIPTAASRIHGISEED 97

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           ++   SF +      +   +  A  + HN        
Sbjct: 98  VRGVGSFETHVGAISELIED--AVIVGHNISNFDWRF 132


>gi|168238504|ref|ZP_02663562.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194735808|ref|YP_002114913.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204930999|ref|ZP_03221825.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194711310|gb|ACF90531.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288686|gb|EDY28061.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204320043|gb|EDZ05248.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322616877|gb|EFY13785.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618116|gb|EFY15008.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625787|gb|EFY22606.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626239|gb|EFY23049.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632652|gb|EFY29397.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638997|gb|EFY35690.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640437|gb|EFY37090.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644201|gb|EFY40746.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649525|gb|EFY45957.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655432|gb|EFY51740.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660811|gb|EFY57042.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662892|gb|EFY59099.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668077|gb|EFY64236.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674164|gb|EFY70258.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675483|gb|EFY71557.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683103|gb|EFY79119.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686797|gb|EFY82775.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195312|gb|EFZ80492.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323199204|gb|EFZ84299.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202983|gb|EFZ88016.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207461|gb|EFZ92409.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213958|gb|EFZ98726.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217444|gb|EGA02163.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323219962|gb|EGA04435.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323231467|gb|EGA15580.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235907|gb|EGA19986.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240478|gb|EGA24521.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245369|gb|EGA29369.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323246734|gb|EGA30706.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323253590|gb|EGA37418.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255358|gb|EGA39128.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323260250|gb|EGA43871.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266842|gb|EGA50328.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323269048|gb|EGA52504.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 232

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +         + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLPELPGEWICT-------MKLSRRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRT 153


>gi|170050189|ref|XP_001859612.1| oligoribonuclease [Culex quinquefasciatus]
 gi|167871717|gb|EDS35100.1| oligoribonuclease [Culex quinquefasciatus]
          Length = 214

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
           D+E TGL+ + DRIIEI  +       TN+   V    P+   + P  +         +
Sbjct: 41 IDLEMTGLNVETDRIIEIACI------VTNKNLDVLERGPDIVIHEPAQIMEAMNEWCKV 94

Query: 71 KD 72
            
Sbjct: 95 NH 96


>gi|222149115|ref|YP_002550072.1| DNA polymerase III epsilon subunit-like 3-5 exonuclease
           [Agrobacterium vitis S4]
 gi|221736100|gb|ACM37063.1| DNA polymerase III epsilon subunit-like 3-5 exonuclease
           [Agrobacterium vitis S4]
          Length = 207

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 61/206 (29%), Gaps = 8/206 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D ET   + +      +G   + +     R  +  + P   + S   + +HGI  
Sbjct: 8   KIIAIDFET--ANEERGSACSVGLAFVENGQVV-RVEERLIRPKTMRFSSFNIAIHGIRP 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++D   F  +  EF D F+              V   + +L R     L     +   
Sbjct: 65  DHVEDAGEFPEVMDEFADDFSGAMVVAHNAAFDLSVWRASCDLYRQPYPSLSYVCSVKLA 124

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                + PS R ++ +   +          H A  D+ + +   I MM      + G   
Sbjct: 125 QKVWPQLPSHRLNVLAAHLQL-----SFRHHNAAEDASVCAQAVIAMMERRGAQDLGELA 179

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF 213
                           S   R     
Sbjct: 180 GMMGISIGRLFPGGYQSCSVRKPARV 205


>gi|3885327|gb|AAC77855.1| hypothetical protein [Arabidopsis thaliana]
          Length = 227

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN 41
           D+E TGL+ + DRI+EI  + + +   T 
Sbjct: 30 IDLEMTGLNVEVDRILEIACI-ITNGDLTQ 58


>gi|83720885|ref|YP_442207.1| oligoribonuclease [Burkholderia thailandensis E264]
 gi|83654710|gb|ABC38773.1| oligoribonuclease [Burkholderia thailandensis E264]
          Length = 229

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGL+   DRIIEI  V
Sbjct: 43 RNELNLVWLDMEMTGLNPDTDRIIEIAVV 71


>gi|301162194|emb|CBW21739.1| putative exonuclease [Bacteroides fragilis 638R]
          Length = 175

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 8/175 (4%)

Query: 9   KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
               D ET TG       +   G V + D   T+  +   + P   +     + +HGIT 
Sbjct: 5   FAAIDFETATGYMESACAV---GIVTVTDGEITDE-YYSLIQPPENEYWRANMLVHGITP 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              +  P F +I+ E       +           +V      +  ++ D L      +  
Sbjct: 61  GMTESLPGFHAIYPEVKKRLQGKVVVAHNEQFDRNVLKNTMRMYGLDYDELSLPERWECT 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
               R       +L++ C+R G        H AL D+   + +Y+  +     ++
Sbjct: 121 CRIYRSLGYKPVNLSACCEREG---IELKHHEALSDARGCAKLYLNFLEKYRPLS 172


>gi|167581087|ref|ZP_02373961.1| oligoribonuclease [Burkholderia thailandensis TXDOH]
          Length = 201

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGL+   DRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLNPDTDRIIEIAVV 43


>gi|190892568|ref|YP_001979110.1| DNA polymerase III protein, epsilon subunit [Rhizobium etli CIAT
           652]
 gi|190697847|gb|ACE91932.1| probable DNA polymerase III protein, epsilon subunit [Rhizobium
           etli CIAT 652]
          Length = 196

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 5/150 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      +G   + +   T R  +  + P   + S   + +HGI 
Sbjct: 1   MKTIAIDFET--ANEQRGSACSVGLAWIEEGRVT-RVEERLIRPRDMRFSGMNIAIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D P F  +  EF +  +       AHNA FD     A L    +   + + +   
Sbjct: 58  PEHVEDAPEFPEVMDEFHEDISGATMI--AHNAAFDFSVWRASLDLYRQSYPELTYLCSL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156
               R       + LN + +  G+   H +
Sbjct: 116 KMAQRIWPHFLSHRLNLIAEHLGLRFMHHN 145


>gi|149190662|ref|ZP_01868930.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
 gi|148835545|gb|EDL52514.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
          Length = 176

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 7/168 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETT LD     I+ I A +++ +   T+  F+V L       S     +        +
Sbjct: 2   DCETTSLDPSVAEIVTIAATKIIDNRIITSDPFEVRL---SAPKSLGEDSVKIHHITHDE 58

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
            K   S   +         N   + ++ ++D   ++   ++    PL    I  +     
Sbjct: 59  LKHGISEKQAMSALLNFIGNRPLVGYHIRYDKKILDRAAKKHLGFPLPNELIEVSQIYND 118

Query: 132 ---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
              +  P+   DL+       + I +  KH AL D+   + VY+K+  
Sbjct: 119 KLLKLLPNGYFDLSLEAICRHLQIPNYHKHDALEDAKAAAMVYLKLTR 166


>gi|33519827|ref|NP_878659.1| ribonuclease T [Candidatus Blochmannia floridanus]
 gi|54036331|sp|Q7VR55|RNT_BLOFL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|33504172|emb|CAD83434.1| ribonuclease T [Candidatus Blochmannia floridanus]
          Length = 223

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 60/187 (32%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLC--PNGRKNSPEALKLH 63
           +V D+ET+GL++  + ++EI  + L      +   +      +   P             
Sbjct: 20  VVIDVETSGLNASTNALLEIATITLKMNEDGWLHVDNMLHFHIKSFPGAILQPEALALNK 79

Query: 64  -------GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
                         +       +            A  +AHNA FD  F+ A  +R N  
Sbjct: 80  INPNSPLRFAVTEQEALVEIFKMVHVGIKAQQCNKAIIVAHNASFDHSFLMAATERTNNI 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +P     T   A          + S  C+  GI       H AL D+   + ++  ++
Sbjct: 140 QDNPFHPFVTFDTAALSGLVFGQTVLSKACEYAGIIFDKNKAHSALYDAEKTAILFCTLV 199

Query: 176 VGGSQIN 182
               ++ 
Sbjct: 200 NAWKKLG 206


>gi|156346891|ref|XP_001621564.1| hypothetical protein NEMVEDRAFT_v1g248663 [Nematostella vectensis]
 gi|156207642|gb|EDO29464.1| predicted protein [Nematostella vectensis]
          Length = 460

 Score = 46.1 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 17/22 (77%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA 31
           ++FD ETTGLD+ ND II++  
Sbjct: 157 VMFDTETTGLDTSNDDIIQLAC 178


>gi|27378800|ref|NP_770329.1| hypothetical protein bsl3689 [Bradyrhizobium japonicum USDA 110]
 gi|27351949|dbj|BAC48954.1| bsl3689 [Bradyrhizobium japonicum USDA 110]
          Length = 68

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 18/26 (69%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL 35
          I+ D+ETTGLD   D +IE+G V+  
Sbjct: 6  ILIDVETTGLDQHEDEVIELGMVKFD 31


>gi|224541140|ref|ZP_03681679.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525949|gb|EEF95054.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM
           15897]
          Length = 297

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 11/183 (6%)

Query: 11  VFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +FDIE    +  ND   +  IG V L D  K   TF   + P      P   K+H I  +
Sbjct: 7   IFDIE----ELNNDPVSVCSIGIVVLED-MKVKETFYSLIRPPKLTFDPYRYKVHKIRPQ 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK +P+F  I+ +   +F  +N+  I+H+ + D+  + A  +R              + 
Sbjct: 62  DLKKQPTFPEIWPKISKYF--ENSIVISHDIQSDLNHLLAVFRRFRIRKPTCYLSCTLVL 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                    +  L SLC  Y  ++   + H AL DS   +++  KMM      +      
Sbjct: 120 AKLFHPELQKYGLGSLCDFY--SVDLENAHNALADSLACAELLKKMMEEHHYTSLKELHE 177

Query: 189 EDR 191
           ++ 
Sbjct: 178 KEN 180


>gi|167624484|ref|YP_001674778.1| exonuclease RNase T and DNA polymerase III [Shewanella halifaxensis
           HAW-EB4]
 gi|167354506|gb|ABZ77119.1| Exonuclease RNase T and DNA polymerase III [Shewanella halifaxensis
           HAW-EB4]
          Length = 205

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 52/166 (31%), Gaps = 1/166 (0%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             D+E TGLD + D+I+ IG + + +      ++  + +  +G       +         
Sbjct: 24  AVDLEMTGLDCQFDQILSIGLIPIHNGLLQVAKSQHLLVSIDGSVGDSATIHGILDNQLT 83

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                  +  +       +   A     +  F    I     +  +     +  ++   +
Sbjct: 84  QAVSAKQAMAWFLEQSKGHVLVAHHAPLDLCFLKTEIQRCYGQTMQFVAIDTMAVEKKRL 143

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R+        L     R    +   + H A +D+    ++ +  M
Sbjct: 144 LRQHDVIKEGTLRLDACRQRYGLPVYTAHNAAVDALACGELLLAQM 189


>gi|328876923|gb|EGG25286.1| hypothetical protein DFA_03535 [Dictyostelium fasciculatum]
          Length = 369

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 8/129 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD ETTGL+ + D+IIEI  + +L+      +F   + P    +S           E  
Sbjct: 145 VFDTETTGLEFE-DQIIEITFINILN----GDSFYGKVKPTVPLSSESYCAHGISLKELD 199

Query: 71  KDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRIIDTL 127
                         F+  + +     IAHN  FD          +++  P D    I+++
Sbjct: 200 NCLEWESLQGKLDSFFQQYIDHKIVIIAHNVTFDRYKLWKMVKDQVHCIPFDKIIFINSI 259

Query: 128 SIARRKHPS 136
            I     P 
Sbjct: 260 EIFLSFGPF 268


>gi|327479722|gb|AEA83032.1| exonuclease I [Pseudomonas stutzeri DSM 4166]
          Length = 477

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/173 (9%), Positives = 41/173 (23%), Gaps = 6/173 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGR--KNSPEALKLHGITDEF 69
           D ETTG+    DR +++  +       +      ++  P      +    L         
Sbjct: 9   DFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLVTGITPAVL 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +     +          +        +N+   + F +   +             +    
Sbjct: 69  QQKGMCEAQFVHHLHRELSTPGTCGAGYNS---LRFDDEVTRYSLYRNFYDPYAREWQGG 125

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
             R             +  GI          L    L +   ++ +     ++
Sbjct: 126 NSRWDLIDLVRTAYALRPEGIGWPEDDGRVTLKLERLSAANGLEHLNAHDALS 178


>gi|300173608|ref|YP_003772774.1| DNA-directed DNA polymerase III subunit epsilon [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887987|emb|CBL91955.1| DNA-directed DNA polymerase III, epsilon chain (Putative)
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 177

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 5/165 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + +    + I    + D    ++ F   + P     S     +HG+ 
Sbjct: 1   MNFIAMDFET--ANHEKYSAVSIAIAIVRDNQVVDK-FYSLIKPET-YFSSRNTAVHGLR 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + D P F     +        N   +AHNA FD   +   L     +      +   
Sbjct: 57  ESDVIDAPKF-PEIWQIISPLFRDNKLVVAHNAAFDNNILKGTLAHYGIEEPHYMLLDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +  +       + LN++    GIT+ H         +     +Y
Sbjct: 116 RTSRKLFPKFENHKLNTVANNLGITLDHHHNALDDAVAAANILIY 160


>gi|229597251|ref|YP_001908888.2| oligoribonuclease [Erwinia tasmaniensis Et1/99]
          Length = 187

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N    I  D+E TGL+ + DRIIEI 
Sbjct: 1  MTANANNLIWIDLEMTGLNPEQDRIIEIA 29


>gi|157147866|ref|YP_001455185.1| oligoribonuclease [Citrobacter koseri ATCC BAA-895]
 gi|166230513|sp|A8AMN6|ORN_CITK8 RecName: Full=Oligoribonuclease
 gi|157085071|gb|ABV14749.1| hypothetical protein CKO_03672 [Citrobacter koseri ATCC BAA-895]
          Length = 181

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|146281544|ref|YP_001171697.1| exonuclease I [Pseudomonas stutzeri A1501]
 gi|145569749|gb|ABP78855.1| exodeoxyribonuclease I [Pseudomonas stutzeri A1501]
          Length = 477

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/173 (9%), Positives = 41/173 (23%), Gaps = 6/173 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGR--KNSPEALKLHGITDEF 69
           D ETTG+    DR +++  +       +      ++  P      +    L         
Sbjct: 9   DFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLVTGITPAVL 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +     +          +        +N+   + F +   +             +    
Sbjct: 69  QQKGMCEAQFVHHLHRELSTPGTCGAGYNS---LRFDDEVTRYSLYRNFYDPYAREWQGG 125

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
             R             +  GI          L    L +   ++ +     ++
Sbjct: 126 NSRWDLIDLVRTAYALRPEGIGWPEDDGRVTLKLERLSAANGLEHLNAHDALS 178


>gi|270160326|ref|ZP_06188980.1| exonuclease/polymerase-like protein [Legionella longbeachae D-4968]
 gi|308051563|ref|YP_003915137.1| putative exonuclease [Legionella longbeachae NSW150]
 gi|269987175|gb|EEZ93432.1| exonuclease/polymerase-like protein [Legionella longbeachae D-4968]
 gi|288859988|emb|CBJ13980.1| putative exonuclease [Legionella longbeachae NSW150]
          Length = 301

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 10/176 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + D+ET G+D+    IIEIG +       D     +     L   G+   PE  K+ GI 
Sbjct: 41  IIDLETMGMDATQHEIIEIGMLSFSFSNEDGILEIKHTYNELNDPGKPIPPEITKITGIR 100

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E +  K    +I   F     +++   I HNA+FD  F+  +     +  +       T
Sbjct: 101 NEDVSGK----AINWTFVFQVLKESHLIICHNAQFDRNFLELQTPEEIQKQVTSLPFGCT 156

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +     K     +                  H A+ D     ++ ++      ++ 
Sbjct: 157 IKDIDWKERDYESSKLDYLNWK--LGYFYDGHRAINDCWATLNLLLQEQGAFDELK 210


>gi|313834343|gb|EFS72057.1| hypothetical protein HMPREF9617_00767 [Propionibacterium acnes
           HL056PA1]
          Length = 192

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 37/161 (22%), Gaps = 10/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDE 68
           ++ D ETT LD    RIIEI  +     + T        + P      P A         
Sbjct: 12  VILDTETTDLD---GRIIEISII----DAATGTVLMDQLINPTLLDIPPGAEWAIRRPHT 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L          ++     +  + E      +        + +         +    T  
Sbjct: 65  VLLPVRVRLGATNQSTTH-HTAHGERTTPRQEKMKRHHCRKHKESPGFGPHKAGQ-PTGG 122

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              R    +   L  +    G                L   
Sbjct: 123 RGSRSKVLAPFFLRKVYHVRGHVSKEDIWGKNCHGCWLTRK 163


>gi|299472855|emb|CBN80424.1| EsV-1-126 [Ectocarpus siliculosus]
          Length = 206

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 67/195 (34%), Gaps = 22/195 (11%)

Query: 7   MRKIVFDIETTGLDSKN-----------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M ++ FD+ETTGL  +             R++ I  V L D             P    +
Sbjct: 1   MPELFFDVETTGLPPRKANPETFEQYDSCRVVSIAWV-LRDQKTVYSQRYSVTDPGIADD 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD----------VGF 105
           +  A  +HGI+   +    +  S+    +     ++ + +AHN  FD          +G 
Sbjct: 60  NIGAEFVHGISRAVMDRYGNAVSVVLSDFMADVNKSDKIVAHNLDFDRSVVSAELFRMGS 119

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            +   + ++ + L   +    L      + S +        ++       + H A+ D  
Sbjct: 120 ADDARRLMSFNSLCTMKSTTNLVRIPNSYGSYKWPKLEELHKFLFGHVFENAHHAMCDVD 179

Query: 166 LLSDVYIKMMVGGSQ 180
            +   Y  ++   + 
Sbjct: 180 AMVKCYFTLLEKHAS 194


>gi|296273413|ref|YP_003656044.1| exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis
           DSM 7299]
 gi|296097587|gb|ADG93537.1| Exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis
           DSM 7299]
          Length = 252

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 2/119 (1%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++FD ETTG + + DRII++GA+ +   +     +      +           +   D
Sbjct: 3   KYVLFDTETTG-NQEEDRIIQLGAMIVDAKAPV-EVYDELCFSDVEIKLEAMEVHNITPD 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             +    +  + F +    +N  +   IAHN  FD+G I  E        LD  R    
Sbjct: 61  MIIGKPEATQTKFYQKLQEYNNPSNYLIAHNINFDLGMIKKEGFESQYQILDTLRCAQH 119


>gi|229014710|ref|ZP_04171818.1| exonuclease [Bacillus mycoides DSM 2048]
 gi|228746575|gb|EEL96470.1| exonuclease [Bacillus mycoides DSM 2048]
          Length = 181

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 11/144 (7%)

Query: 5   NKM-----RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           NKM     + ++ D ETTGL +  D+II+I  + L             + P       EA
Sbjct: 16  NKMFINIDQFVILDTETTGL-TLRDQIIDISVINLSGKIL----LNSLVKP-TINIPAEA 69

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGIT+E +   PS+++I+ E  +    +            +         +  +   
Sbjct: 70  ASIHGITNEMVHGAPSWTAIYKELREVTVGKTLLIYNAEFDLGMIENTCIANNVEFNNFK 129

Query: 120 PSRIIDTLSIARRKHPSSRNDLNS 143
            + ++   +              +
Sbjct: 130 STCVMKMYADYVDSKRWISLSDAT 153


>gi|162449983|ref|YP_001612350.1| exonuclease [Sorangium cellulosum 'So ce 56']
 gi|161160565|emb|CAN91870.1| exonuclease [Sorangium cellulosum 'So ce 56']
          Length = 298

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
          +  D+E TGL  ++DR+IE+   E              + P  
Sbjct: 34 VFLDLEMTGLRPESDRVIEV-CAERTRGDACEDAITSLVRPEP 75


>gi|212634795|ref|YP_002311320.1| exonuclease [Shewanella piezotolerans WP3]
 gi|212556279|gb|ACJ28733.1| Exonuclease [Shewanella piezotolerans WP3]
          Length = 225

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK 39
            D+E TGL+ + D+I+ IG V + +   
Sbjct: 44 AIDLEMTGLNVQFDQILSIGMVPIQNGML 72


>gi|15802257|ref|NP_288281.1| exodeoxyribonuclease X [Escherichia coli O157:H7 EDL933]
 gi|15831808|ref|NP_310581.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. Sakai]
 gi|168762363|ref|ZP_02787370.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501]
 gi|168788263|ref|ZP_02813270.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869]
 gi|217328801|ref|ZP_03444882.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588]
 gi|261227657|ref|ZP_05941938.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258177|ref|ZP_05950710.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. FRIK966]
 gi|12515897|gb|AAG56834.1|AE005407_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13362022|dbj|BAB35977.1| exonuclease X [Escherichia coli O157:H7 str. Sakai]
 gi|189367397|gb|EDU85813.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501]
 gi|189372044|gb|EDU90460.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869]
 gi|209767640|gb|ACI82132.1| exonuclease X [Escherichia coli]
 gi|217318148|gb|EEC26575.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588]
 gi|320188544|gb|EFW63206.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC1212]
 gi|326342223|gb|EGD66004.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. 1044]
          Length = 220

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVHPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|295094549|emb|CBK83640.1| Inhibitor of the KinA pathway to sporulation, predicted
          exonuclease [Coprococcus sp. ART55/1]
          Length = 216

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 7  MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
          M  +  D E   +DS+           IIEIGAV+L +      +F+ ++ P     +  
Sbjct: 1  MIYVFVDFEMNMIDSEYKKEKKICKSEIIEIGAVKLDEDYNEIDSFKSYVKPAYGTMASR 60

Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI 95
           +KL GITD+ ++D PS++     F ++  + +  + 
Sbjct: 61 IIKLTGITDDMVEDAPSYAFAMGSFIEWCADADVIYA 97


>gi|257138397|ref|ZP_05586659.1| oligoribonuclease [Burkholderia thailandensis E264]
          Length = 201

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGL+   DRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLNPDTDRIIEIAVV 43


>gi|167619167|ref|ZP_02387798.1| oligoribonuclease [Burkholderia thailandensis Bt4]
          Length = 201

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGL+   DRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLNPDTDRIIEIAVV 43


>gi|254295263|ref|YP_003061286.1| exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC
          49814]
 gi|254043794|gb|ACT60589.1| Exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC
          49814]
          Length = 192

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 12/90 (13%)

Query: 8  RKIVFDIETTGLDSKNDR--IIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
          R I  D+ET    + NDR  I +IG   V           +  ++ P+    S    KLH
Sbjct: 9  RFIALDVET----ANNDRASICQIGLACVGWDGEILI---WSTYVNPD-VSFSAFNTKLH 60

Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAE 93
          GI  + ++    F  ++     F  +    
Sbjct: 61 GIGADTVRHAQMFPDVWGRLQPFLKQHAMV 90


>gi|238764684|ref|ZP_04625628.1| Oligoribonuclease [Yersinia kristensenii ATCC 33638]
 gi|238697080|gb|EEP89853.1| Oligoribonuclease [Yersinia kristensenii ATCC 33638]
          Length = 181

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + +N+   I  D+E TGLD   DRIIEI 
Sbjct: 1  MTENQNNLIWIDLEMTGLDPLRDRIIEIA 29


>gi|218672255|ref|ZP_03521924.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli GR56]
          Length = 197

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 5/151 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      +G   + +   T R  +  + P   + S   + +HGI 
Sbjct: 1   MKTIAIDFET--ANEQRGSACSVGLAWIEEGRVT-RVEERLIRPRDMRFSGMNIAIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D P F  +  EF D F        AHNA FD     A L    +   + + +   
Sbjct: 58  PEDVEDAPEFPEVMDEFHDDFRGATMI--AHNAAFDFSVWRASLDLYRQSYPELTYLCSL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSK 157
               R       + LN + +  G        
Sbjct: 116 KMAQRIWPHFLSHRLNLIAEHLGPAFHASQC 146


>gi|269140407|ref|YP_003297108.1| Orf81 bacteriophage 186 [Edwardsiella tarda EIB202]
 gi|267986068|gb|ACY85897.1| Orf81 bacteriophage 186 [Edwardsiella tarda EIB202]
          Length = 199

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 60/148 (40%), Gaps = 8/148 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ETTG+  +N  I+    ++          F   + P     +     +HGIT+E +
Sbjct: 32  ILDTETTGV-KENAEIVSAAIIDQDGTVL----FHSLIKP-VNPITEITTAIHGITNEMV 85

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            +KP+++ +  E     N   A  + +NA+FD+  +     +    P+  +  ++    A
Sbjct: 86  AEKPTWAEVHDEIARILNT--APLVVYNAQFDMRMMAQSAAKHGLPPIVVNTEVNCAMEA 143

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKH 158
                   N+ +   +   ++++   + 
Sbjct: 144 YAHFYGQWNEEHQSYRWQSLSMAMFQQD 171


>gi|261885284|ref|ZP_06009323.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp.
          venerealis str. Azul-94]
          Length = 243

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 2/38 (5%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
          V DIET+G    + +IIEIGA++LLD  +  R F+ F+
Sbjct: 53 VVDIETSGG-INSGQIIEIGALKLLDGVEIGR-FESFV 88


>gi|118474671|ref|YP_892037.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118413897|gb|ABK82317.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 265

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 2/38 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           V DIET+G    + +IIEIGA++LLD  +  R F+ F+
Sbjct: 75  VVDIETSGG-INSGQIIEIGALKLLDGVEIGR-FESFV 110


>gi|29654538|ref|NP_820230.1| oligoribonuclease [Coxiella burnetii RSA 493]
 gi|153208846|ref|ZP_01947070.1| oligoribonuclease [Coxiella burnetii 'MSU Goat Q177']
 gi|154707040|ref|YP_001424673.1| oligoribonuclease [Coxiella burnetii Dugway 5J108-111]
 gi|161829936|ref|YP_001597086.1| oligoribonuclease [Coxiella burnetii RSA 331]
 gi|165921448|ref|ZP_02219636.1| oligoribonuclease [Coxiella burnetii RSA 334]
 gi|212212380|ref|YP_002303316.1| oligoribonuclease [Coxiella burnetii CbuG_Q212]
 gi|212218651|ref|YP_002305438.1| oligoribonuclease [Coxiella burnetii CbuK_Q154]
 gi|37999374|sp|Q83C93|ORN_COXBU RecName: Full=Oligoribonuclease
 gi|29541805|gb|AAO90744.1| oligoribonuclease [Coxiella burnetii RSA 493]
 gi|120575697|gb|EAX32321.1| oligoribonuclease [Coxiella burnetii 'MSU Goat Q177']
 gi|154356326|gb|ABS77788.1| oligoribonuclease [Coxiella burnetii Dugway 5J108-111]
 gi|161761803|gb|ABX77445.1| oligoribonuclease [Coxiella burnetii RSA 331]
 gi|165916763|gb|EDR35367.1| oligoribonuclease [Coxiella burnetii RSA 334]
 gi|212010790|gb|ACJ18171.1| oligoribonuclease [Coxiella burnetii CbuG_Q212]
 gi|212012913|gb|ACJ20293.1| oligoribonuclease [Coxiella burnetii CbuK_Q154]
          Length = 183

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 11 LDLEMTGLDPERDRIIEIA 29


>gi|116074604|ref|ZP_01471865.1| Exonuclease [Synechococcus sp. RS9916]
 gi|116067826|gb|EAU73579.1| Exonuclease [Synechococcus sp. RS9916]
          Length = 317

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 64/217 (29%), Gaps = 10/217 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHGITDE 68
           + D ETTGLD + +  +E+GA+       + +    Q FL P     +            
Sbjct: 91  ILDTETTGLDPETEHCLEVGAILFD--VPSRQVLAQQSFLLPVQANAAEP----INRIPA 144

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +            ++    +     +AHNA FD  +           P   S       
Sbjct: 145 AVTRLAQPWEAALAYFQSLLDAAEVLVAHNAAFDRQWFGRGCLPSTAKPWLCSMDDMRWP 204

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVGGSQINFGFK 186
             R+          +L     +  +HR+    +  + +        + +V G +  F FK
Sbjct: 205 KNRQLRARPSVRDLALAYEVPVWAAHRALTDCIYIAEVFRRCEDLEQRLVHGLEPRFLFK 264

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
                  +   +                R++  E  E
Sbjct: 265 AQVSYDQRHLAREAGFRWNDPVPGAWTRRLSVREAKE 301


>gi|188030133|emb|CAO98019.1| Oligoribonuclease [Erwinia tasmaniensis Et1/99]
          Length = 193

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%)

Query: 1  MIRKNKM-----RKIVFDIETTGLDSKNDRIIEIG 30
          M  ++ M       I  D+E TGL+ + DRIIEI 
Sbjct: 1  MPPRHTMTANANNLIWIDLEMTGLNPEQDRIIEIA 35


>gi|134295109|ref|YP_001118844.1| oligoribonuclease [Burkholderia vietnamiensis G4]
 gi|166215757|sp|A4JCK6|ORN_BURVG RecName: Full=Oligoribonuclease
 gi|134138266|gb|ABO54009.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
          vietnamiensis G4]
          Length = 200

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGLD  NDRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43


>gi|186682035|ref|YP_001865231.1| exonuclease, RNase T and DNA polymerase III [Nostoc punctiforme PCC
           73102]
 gi|186464487|gb|ACC80288.1| Exonuclease, RNase T and DNA polymerase III [Nostoc punctiforme PCC
           73102]
          Length = 187

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 60/179 (33%), Gaps = 9/179 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDY--SKTNRTFQVFLCPNGR 53
           M  K     ++ D+E T  D K        IIEIGAV +L+    + +  FQ F+ P   
Sbjct: 1   MQTKISHYYLIVDLEATCCDKKTIPRHEMEIIEIGAV-MLNRATWEIDSEFQQFIQPVRH 59

Query: 54  KN-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
              +    KL  I  + + + P F    S F ++              +D      +   
Sbjct: 60  PQLTDFCTKLTSIQQQDVDEAPKFIEAISRFKEWICSFPNHIFCSWGNYDKKQFIQDCAF 119

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            N      S  I+           S+    +            + H  + D+H ++ +Y
Sbjct: 120 HNFAYPFTSEHINIKEEFSEYLGVSKRFGMAQALNELGIELKGTHHRGIDDAHNIASIY 178


>gi|208806770|ref|ZP_03249107.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4206]
 gi|208726571|gb|EDZ76172.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4206]
          Length = 188

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|16125770|ref|NP_420334.1| exonuclease [Caulobacter crescentus CB15]
 gi|13422904|gb|AAK23502.1| exonuclease [Caulobacter crescentus CB15]
          Length = 202

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 61/205 (29%), Gaps = 7/205 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET     +      IG   + D  +  R    ++ P G + +   +  HGI 
Sbjct: 1   MKVIAIDFET--ASEQRASPCSIGLAWIEDG-EVARVEHHYIRPPGNRFAAFNMAFHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E + D   +  +            A  +AHNA FD+  I    +  +        +   
Sbjct: 58  PEHVADADEWPDVLERIRPELEG--ALVLAHNASFDISVIRRTCEHYDVPAPGFDYLCTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS--HLLSDVYIKMMVGGSQINFG 184
                       + LN +C   G+  +H              L+   +  +     +   
Sbjct: 116 QVARSVWPELPSHKLNVVCGHLGVDFAHHDAAADAYACGRVALAATGLNALSDIRALPQR 175

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRD 209
                 R   +  +     +  +R 
Sbjct: 176 LGMTPGRLDPDSYRPSRIAAAPRRR 200


>gi|72160587|ref|YP_288244.1| DNA polymerase III subunit epsilon [Thermobifida fusca YX]
 gi|71914319|gb|AAZ54221.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX]
          Length = 250

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 12 FDIETTGLDSKNDRIIEIGAVEL--LDYSKTNRTFQVFLCPNGRKNSP 57
          FDIETTG++ + DR++    +E       +T RT+   + P       
Sbjct: 19 FDIETTGINLEQDRVVTAAIIETAADGSQRTRRTW--LVNPGVEIPPE 64


>gi|314983265|gb|EFT27357.1| conserved domain protein [Propionibacterium acnes HL110PA3]
          Length = 87

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
          ++ D ETT LD    RIIEI  ++    +         + P G     EA  +H I+ + 
Sbjct: 17 VILDTETTDLD---GRIIEISIIDAATGTVLMN---QLINPQGAPIYAEARTVHHISPDD 70

Query: 70 LKDKPSFSSIFSEFWD 85
          L   P+F+ ++    D
Sbjct: 71 LATAPTFTQVWPRLED 86


>gi|302557603|ref|ZP_07309945.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
          Tu4000]
 gi|302475221|gb|EFL38314.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
          Tu4000]
          Length = 240

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
          FD+ETTG D +  RI+    +E+       R  +    P G     +A+ +HGI
Sbjct: 11 FDLETTGTDPREARIVTGAVIEVRAGEPLGRR-EWLADP-GVPIPEDAVAVHGI 62


>gi|157368671|ref|YP_001476660.1| oligoribonuclease [Serratia proteamaculans 568]
 gi|166918640|sp|A8G8U2|ORN_SERP5 RecName: Full=Oligoribonuclease
 gi|157320435|gb|ABV39532.1| Exonuclease RNase T and DNA polymerase III [Serratia
          proteamaculans 568]
          Length = 181

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MTGNENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|329940244|ref|ZP_08289526.1| DNA exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329301070|gb|EGG44966.1| DNA exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 251

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
          FD+ETTG D    RI+    +E+ D        Q    P 
Sbjct: 11 FDLETTGTDPYEARIVTGAVIEVRDGEPLG-HRQWLADPG 49


>gi|270264991|ref|ZP_06193254.1| oligoribonuclease [Serratia odorifera 4Rx13]
 gi|270040925|gb|EFA14026.1| oligoribonuclease [Serratia odorifera 4Rx13]
          Length = 181

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MTGNENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|168752095|ref|ZP_02777117.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4113]
 gi|168758576|ref|ZP_02783583.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4401]
 gi|168770825|ref|ZP_02795832.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4486]
 gi|168783143|ref|ZP_02808150.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4076]
 gi|168802378|ref|ZP_02827385.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC508]
 gi|195939745|ref|ZP_03085127.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4024]
 gi|208810405|ref|ZP_03252281.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4206]
 gi|208816703|ref|ZP_03257823.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4045]
 gi|208820052|ref|ZP_03260372.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4042]
 gi|209398184|ref|YP_002270926.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4115]
 gi|254793468|ref|YP_003078305.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14359]
 gi|188013988|gb|EDU52110.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4113]
 gi|188999500|gb|EDU68486.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4076]
 gi|189354630|gb|EDU73049.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4401]
 gi|189360293|gb|EDU78712.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4486]
 gi|189375616|gb|EDU94032.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC508]
 gi|208724921|gb|EDZ74628.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4206]
 gi|208731046|gb|EDZ79735.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4045]
 gi|208740175|gb|EDZ87857.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4042]
 gi|209159584|gb|ACI37017.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4115]
 gi|209767642|gb|ACI82133.1| exonuclease X [Escherichia coli]
 gi|209767646|gb|ACI82135.1| exonuclease X [Escherichia coli]
 gi|254592868|gb|ACT72229.1| DNA exonuclease X [Escherichia coli O157:H7 str. TW14359]
 gi|326343773|gb|EGD67535.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. 1125]
          Length = 220

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVHPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|291529581|emb|CBK95167.1| DNA polymerase III, alpha subunit (gram-positive type) [Eubacterium
           rectale M104/1]
          Length = 345

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 6/130 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKNSPE 58
           I+  K   +V+D+ETTG  SKN RI+   A+                +FL P        
Sbjct: 12  IKDKK--IVVYDLETTGFKSKNTRILSFSAIRYQVSEHGMDEIDRRNMFLNP-MMTIPAY 68

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
              ++ IT+E + D P+     +E   + N  +     +NA FD G +N   +RI     
Sbjct: 69  ITAVNHITNEKVADCPTEYEAGAEILSYLNSADFVSGYNNANFDDGLVNEMARRIGFGKW 128

Query: 119 DPSRIIDTLS 128
            P   ID + 
Sbjct: 129 IPKNEIDVMI 138


>gi|33862659|ref|NP_894219.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9313]
 gi|33634575|emb|CAE20561.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9313]
          Length = 309

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 72/219 (32%), Gaps = 14/219 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ETTGLD K  + +E+GA+      +       FL P        A +        +
Sbjct: 81  IIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLLP----VETNAAESINRIPAEV 136

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                      +++    +     +AHNA FD  +   +              ++ ++  
Sbjct: 137 TRLDQPWRQGLDYFQALLDAADLLVAHNAGFDRQWFGKDQLPAVSK--PWLCTMEDIAWP 194

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------MMVGGSQINFG 184
             +   SR  +  L   YG+ +     H AL D   L++V+ +      +++ G +    
Sbjct: 195 VDRQLRSRPSVRDLALAYGVPVWAA--HRALTDCIYLAEVFARCKDLETLLLHGLEPRRL 252

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
            +       +   K                R++  E  +
Sbjct: 253 MRAQVSYEQRHLAKDAGFRWNDPIQGAWTRRLSDREAAK 291


>gi|225012068|ref|ZP_03702505.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium
           MS024-2A]
 gi|225003623|gb|EEG41596.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium
           MS024-2A]
          Length = 1436

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 56/188 (29%), Gaps = 19/188 (10%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  K +          R I+I                  + P+G     +
Sbjct: 2   YLIFDTETTGLPKKWNAPLSDAENWPRCIQIAWQIHDAKGDLVWHENYLIKPDGYTIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-------- 110
           + K+HGI+    +++    +   E +          + HN  FD   + AE         
Sbjct: 62  SEKIHGISTALAEEQGIPLAEVLEKFHAALRTVDFVVGHNVSFDRNIMGAEYLRADLADV 121

Query: 111 -QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            +                 +   +    +    S    +         H A  D    + 
Sbjct: 122 LEDKMVIDTCTEETAQLCQLTGGRGGKFKLPTLSELYHFLFQEGFEEAHNATADVEATTR 181

Query: 170 VYIKMMVG 177
            +++++  
Sbjct: 182 AFLELLRK 189


>gi|56413202|ref|YP_150277.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362128|ref|YP_002141765.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127459|gb|AAV76965.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093605|emb|CAR59069.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 232

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +         + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RLITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +        + P +    +      
Sbjct: 59  ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLP-------ELPGEWICTMKLSRRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRT 153


>gi|152996402|ref|YP_001341237.1| exodeoxyribonuclease I [Marinomonas sp. MWYL1]
 gi|150837326|gb|ABR71302.1| Exodeoxyribonuclease I [Marinomonas sp. MWYL1]
          Length = 484

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/162 (10%), Positives = 42/162 (25%), Gaps = 6/162 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC--PNGRKNSPEALKLHGITDE 68
           FD ETTG D   DR ++   +    D++        +     +        L       +
Sbjct: 12  FDFETTGTDPARDRPMQFAGIRTDLDFNPIGEPIMFYCRLAEDVLPQPEACLLTGISPQD 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             ++    +          ++     + +N    + F +  ++             +  +
Sbjct: 72  ANREGLCEAEFMQAVEAELSQPGTCALGYN---TIRFDDEVVRYGFYRNFIDPYTREWQN 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              R        +    +  GI           +    L+  
Sbjct: 129 NCSRWDMIDLVRMTYAMRPEGIVWPKNEDGQVSMKLEALTKA 170


>gi|313677443|ref|YP_004055439.1| DNA polymerase iii, alpha subunit [Marivirga tractuosa DSM 4126]
 gi|312944141|gb|ADR23331.1| DNA polymerase III, alpha subunit [Marivirga tractuosa DSM 4126]
          Length = 1433

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 21/224 (9%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSP 57
            +++D ETTGL    +          R ++I   +   +    +      + P G     
Sbjct: 2   YLIYDTETTGLPKNYNAPLSDADNWPRCVQIAWQLHGANGELLDAQNH-IIKPEGFDIPY 60

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---- 113
            A K+HGI+ E  + +        E +    E+    + HN  FD+  + AE+ R     
Sbjct: 61  NAEKVHGISTERAQKEGKPLIEVLEAFKTILEKTDVVVGHNISFDISIMGAEMLRKELSE 120

Query: 114 -----NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                           D   I   +    +    +   +          H A  D    +
Sbjct: 121 TVLTEKPIIDTKEAGTDFCKIPGGRGGKYKWPTLTELHKKLFGQDFADAHDAAYDVDATA 180

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
             +  ++   +    G    E   ++  K    N +   +++  
Sbjct: 181 KCFFGLITEKAVKPLGETPIEAINYEPPKLDAANFATSSKNEEK 224


>gi|238756168|ref|ZP_04617488.1| Oligoribonuclease [Yersinia ruckeri ATCC 29473]
 gi|238705642|gb|EEP98039.1| Oligoribonuclease [Yersinia ruckeri ATCC 29473]
          Length = 181

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 11 IDLEMTGLDPERDRIIEIA 29


>gi|150007459|ref|YP_001302202.1| hypothetical protein BDI_0810 [Parabacteroides distasonis ATCC
           8503]
 gi|298375435|ref|ZP_06985392.1| exonuclease [Bacteroides sp. 3_1_19]
 gi|301310540|ref|ZP_07216479.1| exonuclease [Bacteroides sp. 20_3]
 gi|149935883|gb|ABR42580.1| hypothetical protein BDI_0810 [Parabacteroides distasonis ATCC
           8503]
 gi|298267935|gb|EFI09591.1| exonuclease [Bacteroides sp. 3_1_19]
 gi|300832114|gb|EFK62745.1| exonuclease [Bacteroides sp. 20_3]
          Length = 192

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 74/183 (40%), Gaps = 19/183 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGI 65
           M+ + FD+ETTG+    + + +I   E++    T  +F   +CP+ +     EAL++  +
Sbjct: 1   MKLLFFDLETTGIKYWRNGVHQISG-EIVIDGVTKESFNFNVCPHPQCEIEEEALRICNV 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-----------------A 108
           + E ++  P    ++ +F +  ++   ++   +  F VG+ N                  
Sbjct: 60  SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQNGDN 119

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                         ++ T  + R++H  +     ++ +  GI I     H A  D  L  
Sbjct: 120 YFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLTK 179

Query: 169 DVY 171
           ++Y
Sbjct: 180 EIY 182


>gi|309797899|ref|ZP_07692280.1| exonuclease [Escherichia coli MS 145-7]
 gi|308118507|gb|EFO55769.1| exonuclease [Escherichia coli MS 145-7]
          Length = 182

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 67/164 (40%), Gaps = 4/164 (2%)

Query: 12  FDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            DIE+TGLD     +IIEI  V+    ++T   +F +   P  R   P+A  +HGI+ E 
Sbjct: 6   VDIESTGLDFLSGHKIIEIAMVKYEIETQTMVDSFVMRFNP-RRSIDPKAQAVHGISLED 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L  +P  +   S    +    +  WIAHN +           +     L    +IDTL  
Sbjct: 65  LAAEPLLADHASSVASY-LSSSDIWIAHNGEAFDIPFIRHELKSYGFSLPDIPLIDTLFS 123

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                   R  L  L    G    H   H AL D++L+   + K
Sbjct: 124 LWATEDGKRPRLEELAFSLGFIYDHAKAHSALYDTNLMMQCFFK 167


>gi|311111764|ref|YP_003982986.1| DNA polymerase III subunit epsilon [Rothia dentocariosa ATCC 17931]
 gi|310943258|gb|ADP39552.1| DNA polymerase III subunit epsilon [Rothia dentocariosa ATCC 17931]
          Length = 230

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 7/206 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D    RI+    + L       R  +    P G +    A  +HGIT E+ +
Sbjct: 11  FDLETTGVDVTTARIVTASLLLLNPDGSVQRAGEWLANP-GIEIPEGAASVHGITTEYAR 69

Query: 72  DKPSFSSIFSEFWD----FFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIID 125
                +                     IA NA +D   ++ E+ R N     L    I+D
Sbjct: 70  SHGQPAQQVIWEVAGAIGSLFLDGIPVIAFNAAYDFSVLHHEMLRYNIAHGELPAGHILD 129

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
              I +   P  R +           +   + H +  D+     + +K+     +I    
Sbjct: 130 PYVIHKHVIPRKRGNRKLETLTAEHDVVLENAHTSKADALAAERLLVKLAERFPEIATDA 189

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP 211
                   +       +     R KP
Sbjct: 190 AALHTHQVQWSLDQARDFQDWLRTKP 215


>gi|255013952|ref|ZP_05286078.1| hypothetical protein B2_08587 [Bacteroides sp. 2_1_7]
          Length = 192

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 74/183 (40%), Gaps = 19/183 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGI 65
           M+ + FD+ETTG+    + + +I   E++    T  +F   +CP+ +     EAL++  +
Sbjct: 1   MKLLFFDLETTGIKYWRNGVHQISG-EIVIDGVTKESFNFNVCPHSQCEIEEEALRICNV 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-----------------A 108
           + E ++  P    ++ +F +  ++   ++   +  F VG+ N                  
Sbjct: 60  SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQNGDH 119

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                         ++ T  + R++H  +     ++ +  GI I     H A  D  L  
Sbjct: 120 YFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLTK 179

Query: 169 DVY 171
           ++Y
Sbjct: 180 EIY 182


>gi|269955496|ref|YP_003325285.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
          cellulosilytica DSM 15894]
 gi|269304177|gb|ACZ29727.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 247

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPN 51
          FD ETTG+D  NDRI+    V  +    T+ RT+   + P 
Sbjct: 21 FDTETTGVDVANDRIVTAAVVLRIPGVSTDVRTW--LVDPG 59


>gi|254520783|ref|ZP_05132839.1| exonuclease [Clostridium sp. 7_2_43FAA]
 gi|226914532|gb|EEH99733.1| exonuclease [Clostridium sp. 7_2_43FAA]
          Length = 252

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 74/239 (30%), Gaps = 28/239 (11%)

Query: 7   MRKIVFDIE---------TTGLDSKNDR------------IIEIGAVELLDYSKTNRTFQ 45
           M  IV D+E         TT  D  N+             II+IGAV++ +  +    F 
Sbjct: 1   MNYIVCDLEFNQKYIPSNTT--DKNNNESIDSTMKQLPFEIIQIGAVKINENLEITSNFN 58

Query: 46  VFLCP-NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
             + P      +P    +  I  + L    +FS+++  F +F  +  A            
Sbjct: 59  ELIRPIVYTDINPYVENITKINKDMLSSCETFSNVYKRFLNFLGDDEAVLCVWGKSDIKE 118

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN--SLCKRYGITISHRSKHGALL 162
           F+           L PS+ ID      +     +                     H A  
Sbjct: 119 FLRNIKFNNLSTSLFPSKYIDVQKHTSKLFHIQKGKQIGLKTAVEMLNIDFENKFHNAFY 178

Query: 163 DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           D+     V+ K  +    I      + +R  K + K   +    +  K     IT EE 
Sbjct: 179 DALYTYKVFKK--IYNPSIIPKIYNDNNRTHKTKVKIDTDALFKQFSKMYDKEITAEEK 235


>gi|297825941|ref|XP_002880853.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297326692|gb|EFH57112.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 223

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN 41
           D+E TGL+ + DRI+EI  + + D + T 
Sbjct: 50 IDLEMTGLNVEVDRILEIACI-ITDGNLTK 78


>gi|295677244|ref|YP_003605768.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
          CCGE1002]
 gi|295437087|gb|ADG16257.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
          CCGE1002]
          Length = 203

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          ++ M  +  D+E TGL+   DRIIEI  V
Sbjct: 15 RSDMNLVWLDMEMTGLEPDTDRIIEIAVV 43


>gi|78065664|ref|YP_368433.1| oligoribonuclease [Burkholderia sp. 383]
 gi|123569006|sp|Q39IC7|ORN_BURS3 RecName: Full=Oligoribonuclease
 gi|77966409|gb|ABB07789.1| Exonuclease [Burkholderia sp. 383]
          Length = 206

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGLD  NDRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43


>gi|258406595|ref|YP_003199337.1| Exonuclease RNase T and DNA polymerase III [Desulfohalobium
           retbaense DSM 5692]
 gi|257798822|gb|ACV69759.1| Exonuclease RNase T and DNA polymerase III [Desulfohalobium
           retbaense DSM 5692]
          Length = 233

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           V D E TGL  +   II IGAV +        +R F   +CP  +  +     +H I+ +
Sbjct: 38  VLDTELTGLR-RRHEIISIGAVRIEHLALKPLDR-FYTEVCP--KAWTKTGTLIHRISPQ 93

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +D P    +  E   +     +  I HN   D+ F+    ++    PL    
Sbjct: 94  QCQDAPKIGKVLPELIAYLGT--SLLIGHNIALDLQFLQKACKKHLGHPLVHPC 145


>gi|222823839|ref|YP_002575413.1| exonuclease [Campylobacter lari RM2100]
 gi|222539061|gb|ACM64162.1| conserved hypothetical protein, putative exonuclease [Campylobacter
           lari RM2100]
          Length = 459

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 54/155 (34%), Gaps = 5/155 (3%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K+  IV D ETTGL    D I+++  ++   Y      F  +  P  +    EA K+HGI
Sbjct: 148 KLNVIVIDTETTGLREWEDEILQLSIIDETGYLI----FDKYFKPKYKSTWIEAQKIHGI 203

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
              F+++K S  +   +  +         I +N  FD+ FI   +             + 
Sbjct: 204 KPAFVQNKASIDNYKIQL-EKIFNDADVIIGYNLDFDLKFIKRVIDFEKPMFCIDVMKLF 262

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
           T             D     K+      H     A
Sbjct: 263 TSYYHEESSILPNVDCGYSYKKLTFAAWHFKNPNA 297


>gi|224120530|ref|XP_002330965.1| predicted protein [Populus trichocarpa]
 gi|222872757|gb|EEF09888.1| predicted protein [Populus trichocarpa]
          Length = 219

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 6  KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN 41
          KM  +  D+E TGL+++ DRI+EI  + + D   T 
Sbjct: 38 KMPLVWIDLEMTGLNTEVDRILEIACI-ITDGYLTK 72


>gi|124023602|ref|YP_001017909.1| DNA polymerase III subunit epsilon [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963888|gb|ABM78644.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9303]
          Length = 321

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 72/219 (32%), Gaps = 14/219 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ETTGLD K  + +E+GA+      +       FL P        A +        +
Sbjct: 93  IIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLLP----VETNAAESINRIPAEV 148

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                      +++    +     +AHNA FD  +   +              ++ ++  
Sbjct: 149 TRLDQPWRQGLDYFQALLDAADLLVAHNAGFDRQWFGKDQLPAVSK--PWLCTMEDIAWP 206

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------MMVGGSQINFG 184
             +   SR  +  L   YG+ +     H AL D   L++V+ +      +++ G +    
Sbjct: 207 VDRQLRSRPSVRDLALAYGVPVWAA--HRALTDCIYLAEVFARCKDLETLLLHGLEPRRL 264

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
            +       +   K                R++  E  +
Sbjct: 265 MRAQVSYAQRHLAKEAGFRWNDPIQGAWTRRLSDREAAK 303


>gi|283834783|ref|ZP_06354524.1| oligoribonuclease [Citrobacter youngae ATCC 29220]
 gi|291069029|gb|EFE07138.1| oligoribonuclease [Citrobacter youngae ATCC 29220]
          Length = 181

 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|269796146|ref|YP_003315601.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
          [Sanguibacter keddieii DSM 10542]
 gi|269098331|gb|ACZ22767.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
          [Sanguibacter keddieii DSM 10542]
          Length = 241

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
          FD ETTG+D   DRI+    V     +   RT+   L P        +    
Sbjct: 11 FDTETTGVDVSEDRIVSAALVRRHVGTTEVRTW--LLDPGVPIPPEASSIHG 60


>gi|331665829|ref|ZP_08366723.1| oligoribonuclease [Escherichia coli TA143]
 gi|331056880|gb|EGI28874.1| oligoribonuclease [Escherichia coli TA143]
          Length = 181

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|283786843|ref|YP_003366708.1| oligoribonuclease [Citrobacter rodentium ICC168]
 gi|282950297|emb|CBG89944.1| oligoribonuclease [Citrobacter rodentium ICC168]
          Length = 181

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|262341080|ref|YP_003283935.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272417|gb|ACY40325.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 1434

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 67/210 (31%), Gaps = 23/210 (10%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQ---VFLCPNGRKN 55
            ++ D ETTGL    +          RI++       ++       +     + P+    
Sbjct: 2   YLIVDTETTGLPISYNFSITHTDNWPRIVQFSW---QNHDILGDLIEFKNFIIKPDHYDI 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----- 110
              A K+HGIT+E  +      S     +    E++   I HN +FD   I  E      
Sbjct: 59  PFNAFKIHGITNEKAEKYGVDLSFVLCEFRKSLEKSQCLIGHNLEFDKKVIECEFLRKKI 118

Query: 111 --QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                 K  LD   I  +           +    S   +        + H A  D    +
Sbjct: 119 EISFKKKKILDTKEISVSYCKLPGNRKKFKWPTLSELYQKLFEEKIPNLHDAANDVKATA 178

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
             +++++  G   +      +D   K + +
Sbjct: 179 RCFLELLRIGIISHQDIGVEKDTILKFKNR 208


>gi|206579385|ref|YP_002240881.1| oligoribonuclease [Klebsiella pneumoniae 342]
 gi|288937537|ref|YP_003441596.1| exonuclease RNase T and DNA polymerase III [Klebsiella variicola
          At-22]
 gi|206568443|gb|ACI10219.1| oligoribonuclease [Klebsiella pneumoniae 342]
 gi|288892246|gb|ADC60564.1| Exonuclease RNase T and DNA polymerase III [Klebsiella variicola
          At-22]
          Length = 181

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|152973034|ref|YP_001338180.1| oligoribonuclease [Klebsiella pneumoniae subsp. pneumoniae MGH
          78578]
 gi|166216264|sp|A6TH79|ORN_KLEP7 RecName: Full=Oligoribonuclease
 gi|150957883|gb|ABR79913.1| oligoribonuclease [Klebsiella pneumoniae subsp. pneumoniae MGH
          78578]
          Length = 181

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|221213533|ref|ZP_03586507.1| oligoribonuclease [Burkholderia multivorans CGD1]
 gi|221166322|gb|EED98794.1| oligoribonuclease [Burkholderia multivorans CGD1]
          Length = 211

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGLD  NDRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43


>gi|295098321|emb|CBK87411.1| Oligoribonuclease (3'->5' exoribonuclease) [Enterobacter cloacae
          subsp. cloacae NCTC 9394]
          Length = 181

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 11 IDLEMTGLDPERDRIIEIA 29


>gi|116253032|ref|YP_768870.1| DNA polymerase/exonuclease [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257680|emb|CAK08778.1| putative DNA polymerase/exonuclease [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 196

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 5/150 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      +G   + D   T R  +  + P   + S   + +HGI 
Sbjct: 1   MKTIAIDFET--ANEQRGSACSVGLAWIEDGRVT-RVEERLIRPRDMRFSGMNIAIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D P F  +  EF + F        AHNA FD     A L    +   + + +   
Sbjct: 58  PEHVEDAPEFPEVMDEFEEDFRGATMI--AHNAAFDFSVWRASLDLYRQSYPELTYLCSL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156
               R       + LN + +  G+   H +
Sbjct: 116 KMAQRIWPHFLSHRLNLIAEHLGLRFVHHN 145


>gi|168702958|ref|ZP_02735235.1| DNA polymerase I (PolI) [Gemmata obscuriglobus UQM 2246]
          Length = 203

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 5/32 (15%)

Query: 10 IVFDIETTGLDSKNDRI--IEIGA---VELLD 36
          +  D ETTGLD   DR+  I++ A   V L+D
Sbjct: 51 VAVDTETTGLDPARDRVRLIQVAAGQDVALID 82


>gi|328906095|gb|EGG25870.1| exonuclease [Propionibacterium sp. P08]
          Length = 207

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 13/175 (7%)

Query: 9   KIVFDIET----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  D ET     G+ +      ++  V++ D    +R     + P    +S E   LHG
Sbjct: 37  FVAVDFETANRMGGVSA-----CQLAMVKVHDGHIVDR-LNTLIRPPEGWDSFEFTYLHG 90

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+   + D P +++I      F +   A   AHNA FD        +      L      
Sbjct: 91  ISAADVVDAPLWANIADGVSQFVDG--ATVYAHNAAFDSRVWRQLDEYFGTTTLPSPFFC 148

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +   A+R  P   N                + H A  D+   + +  ++     
Sbjct: 149 -SYRTAQRLIPGLPNYKLPTVLNACAPTYRLNHHRADSDAEACALIVCQLQRLAD 202


>gi|313835961|gb|EFS73675.1| exonuclease [Propionibacterium acnes HL037PA2]
 gi|314927196|gb|EFS91027.1| exonuclease [Propionibacterium acnes HL044PA1]
 gi|314970727|gb|EFT14825.1| exonuclease [Propionibacterium acnes HL037PA3]
          Length = 184

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 13/175 (7%)

Query: 9   KIVFDIET----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  D ET     G+ +      ++  V++ D    +R     + P    +S E   LHG
Sbjct: 14  FVAVDFETANRMGGVSA-----CQLAMVKVHDGHIVDR-LNTLIRPPEGWDSFEFTYLHG 67

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+   + D P +++I      F +   A   AHNA FD        +      L      
Sbjct: 68  ISAADVVDAPLWANIADGVSQFVDG--ATVYAHNAAFDSRVWRQLDEYFGTTTLPSPFFC 125

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +   A+R  P   N                + H A  D+   + +  ++     
Sbjct: 126 -SYRTAQRLIPGLPNYKLPTVLNACAPTYRLNHHRADSDAEACALIVCQLQRLAD 179


>gi|258646762|ref|ZP_05734231.1| exonuclease [Dialister invisus DSM 15470]
 gi|260404188|gb|EEW97735.1| exonuclease [Dialister invisus DSM 15470]
          Length = 207

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 62/172 (36%), Gaps = 9/172 (5%)

Query: 7   MRKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+    D ET   G    +     +G + + D ++    +   + P      P  ++++G
Sbjct: 1   MKYAAIDFETAYWG--PGSA--CSLG-ISVSDGNEITEEWYRLIRPYRMNFDPICMRVNG 55

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I  + ++ +P+F + + E  +      +   AHNA+FD+G + + L   +   +      
Sbjct: 56  IYPDDVEKEPAFPAFWKEVAERLEG--SIVFAHNARFDMGVLASVLDVYDLPDIHFLYGD 113

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                         + L+++    G   +H           ++    ++   
Sbjct: 114 TVAVSRMLWKELPNHKLDTVAGSLGYDFNHHQALDDARACEMIVRKAVEKTE 165


>gi|159484124|ref|XP_001700110.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158272606|gb|EDO98404.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 398

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 58/194 (29%), Gaps = 29/194 (14%)

Query: 11  VFDIETTGLD----------------SKND-------RIIEIGAVEL--LDYSKTNRTFQ 45
           V D ETTG                     D       RI+ I    L      +      
Sbjct: 203 VVDTETTGFPRRLPGTPMNGFIREQVPYTDLEGWSTARIVSIAWRVLAPDGRMELQEHGY 262

Query: 46  VFLCPNGRKNSPEALKLHGITDEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
             + P G     +A+++HGI+ +    +  P    +               +AHN K+D+
Sbjct: 263 RIVRPVGFVIPADAVQIHGISTQRATQEGLPLDQVLDELMSAIQRWNCGVIVAHNLKYDL 322

Query: 104 GFI--NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
             I      +   +D     R+    +    K    R    +   +       R  H A 
Sbjct: 323 NVILSELYRRNRAQDVARLERMEGVCTANCSKFYLGRYHKQAELLKALTDEDMRVAHDAE 382

Query: 162 LDSHLLSDVYIKMM 175
            D+   +  Y+ ++
Sbjct: 383 CDAEACAKCYVALL 396


>gi|240168250|ref|ZP_04746909.1| hypothetical protein MkanA1_02987 [Mycobacterium kansasii ATCC
           12478]
          Length = 680

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 20/180 (11%)

Query: 9   KIVFDIETTGLDSKN-----------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
            +V D+E     +             D I EIGAV++   +     F   + P  R   P
Sbjct: 57  FVVVDLE-----TTGGRTTGTEAAPPDAITEIGAVKVRGGTVLAE-FATLVDPQ-RSIPP 109

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           + ++L GIT   ++D P  S++   F++     N+ ++AHNA FD+GF+ A  ++ +   
Sbjct: 110 QIVQLTGITTAMVRDAPVISAVLPMFFE--FAGNSVFVAHNAGFDIGFLRAAARQCDITW 167

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             P  +       R         +         +++ +  H AL D+    DV   ++  
Sbjct: 168 PRPKVLCTVRLARRVLSREEAPSVRLAELARLFSVATQPTHRALDDARATVDVLHALIER 227


>gi|229551811|ref|ZP_04440536.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1]
 gi|258539212|ref|YP_003173711.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705]
 gi|229314755|gb|EEN80728.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1]
 gi|257150888|emb|CAR89860.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705]
          Length = 180

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      +  V +        +F   + P  +   P+ +++HGIT
Sbjct: 1   MDFIAMDFET--ANRKRASACSLALVVVQQNRVV-DSFYTLINPQMQ-FDPQNIRIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            + ++D+P+F          F        AHNA FDV  
Sbjct: 57  PDMVQDQPTF-DRVWPHIQMFYTPGRIVTAHNAPFDVSV 94


>gi|119962878|ref|YP_948455.1| DNA polymerase III subunit epsilon [Arthrobacter aurescens TC1]
 gi|119949737|gb|ABM08648.1| putative DNA polymerase III epsilon subunit [Arthrobacter aurescens
           TC1]
          Length = 236

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 70/215 (32%), Gaps = 5/215 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   N + +  FD+ETTG +S++ RI+      +  +       +    P G +   EA 
Sbjct: 1   MSSWNTLSRAAFDLETTGKNSRSARIVTASITVVDAHGGLIAEHEWLADP-GVEIPLEAS 59

Query: 61  KLHGITDEFLKDKPSFSSIFSEFW----DFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           ++HG+T E  + +   ++  +           +     IA NA +D   + AE  R    
Sbjct: 60  EVHGVTTEKARAEGRPAAEVTREVAGVLQGLFDDGTPVIAFNASYDFTVLAAESARYGVP 119

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            L    ++D   + ++     +             +   + H +  D+     V   M  
Sbjct: 120 QLSRFPVLDPYVMNKQMDRYRKGKRTLTALCEEYGVDLTNAHTSAADALATLRVLDAMAG 179

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
              ++     T              +     R   
Sbjct: 180 KFPKLQMPASTLHQLQVDWAASQAADFQQYLRRSK 214


>gi|38704238|ref|NP_313168.2| oligoribonuclease [Escherichia coli O157:H7 str. Sakai]
 gi|161367457|ref|NP_290795.2| oligoribonuclease [Escherichia coli O157:H7 EDL933]
 gi|168747976|ref|ZP_02772998.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4113]
 gi|168755351|ref|ZP_02780358.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4401]
 gi|168766441|ref|ZP_02791448.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4486]
 gi|168774540|ref|ZP_02799547.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4196]
 gi|168780594|ref|ZP_02805601.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4076]
 gi|168784799|ref|ZP_02809806.1| oligoribonuclease [Escherichia coli O157:H7 str. EC869]
 gi|168802329|ref|ZP_02827336.1| oligoribonuclease [Escherichia coli O157:H7 str. EC508]
 gi|195935954|ref|ZP_03081336.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4024]
 gi|208812669|ref|ZP_03253998.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4045]
 gi|208819030|ref|ZP_03259350.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4042]
 gi|209398620|ref|YP_002273707.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4115]
 gi|217325417|ref|ZP_03441501.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14588]
 gi|254796184|ref|YP_003081021.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14359]
 gi|261225285|ref|ZP_05939566.1| oligoribonuclease [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255463|ref|ZP_05947996.1| oligoribonuclease [Escherichia coli O157:H7 str. FRIK966]
 gi|291285577|ref|YP_003502395.1| Oligoribonuclease [Escherichia coli O55:H7 str. CB9615]
 gi|20138827|sp|Q8XDP0|ORN_ECO57 RecName: Full=Oligoribonuclease
 gi|187769887|gb|EDU33731.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4196]
 gi|188017565|gb|EDU55687.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4113]
 gi|189001658|gb|EDU70644.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4076]
 gi|189357409|gb|EDU75828.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4401]
 gi|189363946|gb|EDU82365.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4486]
 gi|189374804|gb|EDU93220.1| oligoribonuclease [Escherichia coli O157:H7 str. EC869]
 gi|189375661|gb|EDU94077.1| oligoribonuclease [Escherichia coli O157:H7 str. EC508]
 gi|208733946|gb|EDZ82633.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4045]
 gi|208739153|gb|EDZ86835.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4042]
 gi|209160020|gb|ACI37453.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4115]
 gi|217321638|gb|EEC30062.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14588]
 gi|254595584|gb|ACT74945.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14359]
 gi|290765450|gb|ADD59411.1| Oligoribonuclease [Escherichia coli O55:H7 str. CB9615]
 gi|320190703|gb|EFW65353.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli O157:H7 str.
          EC1212]
 gi|320638923|gb|EFX08569.1| oligoribonuclease [Escherichia coli O157:H7 str. G5101]
 gi|320644292|gb|EFX13357.1| oligoribonuclease [Escherichia coli O157:H- str. 493-89]
 gi|320649610|gb|EFX18134.1| oligoribonuclease [Escherichia coli O157:H- str. H 2687]
 gi|320655006|gb|EFX22967.1| oligoribonuclease [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660513|gb|EFX27974.1| oligoribonuclease [Escherichia coli O55:H7 str. USDA 5905]
 gi|320665782|gb|EFX32819.1| oligoribonuclease [Escherichia coli O157:H7 str. LSU-61]
 gi|326341785|gb|EGD65568.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli O157:H7 str.
          1125]
 gi|326346640|gb|EGD70374.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli O157:H7 str.
          1044]
          Length = 181

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|163754237|ref|ZP_02161360.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
 gi|161326451|gb|EDP97777.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
          Length = 457

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 10/165 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTG   ++++I EI   +    +  +  F   + PN          L GI +  +
Sbjct: 9   IIDVETTG---RSNKITEISIFKFDGETIVDE-FTSLVNPN-VLIPTHITALTGIDNAMV 63

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P+F+ I  E       +++ ++AHN  FD   I  E + I+ D          LS A
Sbjct: 64  ADAPTFAEIAKEVLS--ITKDSIFVAHNVNFDYNVIRNEFKAIDLDFRRKKLCTVRLSRA 121

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                     L  LCK     I    +H A  D+     ++  ++
Sbjct: 122 LIPG-FKSYSLGKLCKSLN--IHISDRHRARGDAAATVILFQLLL 163


>gi|56708263|ref|YP_170159.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670734|ref|YP_667291.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457383|ref|ZP_03665856.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370748|ref|ZP_04986753.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875083|ref|ZP_05247793.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604755|emb|CAG45833.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321067|emb|CAL09216.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568991|gb|EDN34645.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254841082|gb|EET19518.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159490|gb|ADA78881.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 482

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 1/132 (0%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71
           D+ET+G+++  D++++  A+ +         F  F+  N      P A   H I+     
Sbjct: 11  DLETSGINNSFDQVLQFAAIRIDLDFNEIERFNFFVKLNPDTTPSPMATITHHISIAQAN 70

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
              +      +     N      I +N               N  P    +  +  S A 
Sbjct: 71  TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKNGCSRAD 130

Query: 132 RKHPSSRNDLNS 143
                +   L  
Sbjct: 131 LFPIVTCYYLFC 142


>gi|258507958|ref|YP_003170709.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
 gi|257147885|emb|CAR86858.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
 gi|259649285|dbj|BAI41447.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
          Length = 180

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      +  V +        +F   + P  +   P+ +++HGIT
Sbjct: 1   MDFIAMDFET--ANRKRASACSLALVVVQQNRVV-DSFYTLINPQMQ-FDPQNIRIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            + ++D+P+F          F        AHNA FDV  
Sbjct: 57  PDMVQDQPTF-DRVWPHIQMFYTPGRIVTAHNAPFDVSV 94


>gi|149186517|ref|ZP_01864829.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21]
 gi|148829744|gb|EDL48183.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21]
          Length = 297

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 62/226 (27%), Gaps = 12/226 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIG---AVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHGI 65
           + D ETTGL ++ D IIE+         +       F    +L   G++  P+   + G+
Sbjct: 51  IVDTETTGLSAETDVIIELAIMLCFVGDNGEVIG-HFGPVSWLQDPGQELDPKITLVTGL 109

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             + LK++    ++     D  +   A     +A F          +           + 
Sbjct: 110 GAQHLKNQKINDTVARGLLDRADLIAAHNAKFDAGFIERRYPDLAGKAWACSCSEIDWLK 169

Query: 126 TLSIARRK-----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                R +     H    +D +                        +     +++     
Sbjct: 170 LGYEGRSQSALLAHAGWFSDAHRAAADVWALFWLLQHRQRDPGGGPIRTHLARLIEAADT 229

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK 226
                +     F K+E                   +   E  EH++
Sbjct: 230 PTVMVQAERAPFAKKELLRARGYRWNPDGPFWQIELLP-EKVEHEQ 274


>gi|146307535|ref|YP_001188000.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina
           ymp]
 gi|145575736|gb|ABP85268.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina
           ymp]
          Length = 182

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 5/113 (4%)

Query: 9   KIVFDIE-TT--GLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E TT  G    +   IIEIGA  +         FQ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTDEGGWPLEEMEIIEIGASLVGADGHERDHFQRFVKPQRRPCLTDFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            I    +    S   ++++   +  +     +  ++  D      E +     
Sbjct: 64  HIAQADVDSAGSLPQVWAQLERWLEQHAPRLVGWSSWGDYDRRQLEQEWRQHQ 116


>gi|260599488|ref|YP_003212059.1| oligoribonuclease [Cronobacter turicensis z3032]
 gi|260218665|emb|CBA34001.1| Oligoribonuclease [Cronobacter turicensis z3032]
          Length = 181

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPRQDRIIEIA 29


>gi|262045407|ref|ZP_06018430.1| oligoribonuclease [Klebsiella pneumoniae subsp. rhinoscleromatis
          ATCC 13884]
 gi|330003307|ref|ZP_08304578.1| oligoribonuclease [Klebsiella sp. MS 92-3]
 gi|259037236|gb|EEW38484.1| oligoribonuclease [Klebsiella pneumoniae subsp. rhinoscleromatis
          ATCC 13884]
 gi|328537018|gb|EGF63306.1| oligoribonuclease [Klebsiella sp. MS 92-3]
          Length = 181

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|199597302|ref|ZP_03210733.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus rhamnosus HN001]
 gi|199591818|gb|EDY99893.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus rhamnosus HN001]
          Length = 180

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      +  V +        +F   + P  +   P+ +++HGIT
Sbjct: 1   MDFIAMDFET--ANRKRASACSLALVVVQQNRVV-DSFYTLINPQMQ-FDPQNIRIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            + ++D+PSF          F        AHNA FDV  
Sbjct: 57  PDMVQDQPSF-DRVWPHIQMFYTPGRIVTAHNAPFDVSV 94


>gi|314937698|ref|ZP_07845022.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a04]
 gi|314943353|ref|ZP_07850126.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133C]
 gi|314953543|ref|ZP_07856454.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133A]
 gi|314994073|ref|ZP_07859394.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133B]
 gi|314996850|ref|ZP_07861856.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a01]
 gi|313589017|gb|EFR67862.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a01]
 gi|313591508|gb|EFR70353.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133B]
 gi|313594422|gb|EFR73267.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133A]
 gi|313597934|gb|EFR76779.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133C]
 gi|313642944|gb|EFS07524.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a04]
          Length = 194

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + +      +  V + +    +  F   + P         +++HGI 
Sbjct: 18  MNFVAMDFET--ANHQPYSACSLALVMVKNSQIVDE-FYTLIQPETPFF-WRNVQIHGIH 73

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +++ P F  ++     +F +     +AHNA FD   +   L   + +  +   +   
Sbjct: 74  QEDVRNAPKFPEVWQTIQPYFQKNRLV-VAHNAAFDTKVLAGCLDYYHLEQPNYLSLCTV 132

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            S  R       + LN++C+   I + H   H AL DS   +++ +
Sbjct: 133 KSSRRLFPEFPNHRLNTVCENLNIQLDH--HHDALEDSRACAEILL 176


>gi|170766878|ref|ZP_02901331.1| oligoribonuclease [Escherichia albertii TW07627]
 gi|170124316|gb|EDS93247.1| oligoribonuclease [Escherichia albertii TW07627]
 gi|315617577|gb|EFU98183.1| exonuclease family protein [Escherichia coli 3431]
          Length = 181

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|161503006|ref|YP_001570118.1| exodeoxyribonuclease X [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864353|gb|ABX20976.1| hypothetical protein SARI_01068 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 231

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 66/173 (38%), Gaps = 20/173 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +         + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +             P   I T+ ++
Sbjct: 59  ADKPWIEDVI-----PLYYGSQWYVAHNASFDRRVLPE----------LPGEWICTMKLS 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           RR  P  +    +L K   +++            +        ++       +
Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIIRTTGW 156


>gi|323975494|gb|EGB70595.1| exonuclease [Escherichia coli TW10509]
          Length = 181

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|169847019|ref|XP_001830222.1| oligoribonuclease [Coprinopsis cinerea okayama7#130]
 gi|116508698|gb|EAU91593.1| oligoribonuclease [Coprinopsis cinerea okayama7#130]
          Length = 216

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 10 IV-FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          IV  D+E TGL+ + D+IIEI AV + +      +   Q  +                  
Sbjct: 15 IVWVDLEMTGLNPQKDKIIEI-AVLITNGNLELVDDGIQYIIRAEKSLLDGMDEWCTKQH 73


>gi|76810706|ref|YP_334337.1| oligoribonuclease [Burkholderia pseudomallei 1710b]
 gi|76580159|gb|ABA49634.1| oligoribonuclease [Burkholderia pseudomallei 1710b]
          Length = 229

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGLD   DRIIEI  V
Sbjct: 43 RNELNLVWLDMEMTGLDPDTDRIIEIAVV 71


>gi|325280210|ref|YP_004252752.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
 gi|324312019|gb|ADY32572.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
          Length = 169

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 5/144 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +    D ET   + +   +  +G V +++       F   + P     S     +HG++ 
Sbjct: 3   KFAAIDFET--ANWQQTSVCSVGIV-VMNRGVIEDRFYSLIHPAPNFYSRRNTAIHGLSR 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E  ++  +F +++ E            +AHN+ FD G + A  +    D    S      
Sbjct: 60  EDTEEALAFPTVWREIAPMIEG--IPLVAHNSMFDEGCLKAVFRLYEMDYPGYSFYCTYR 117

Query: 128 SIARRKHPSSRNDLNSLCKRYGIT 151
              +         L+++    G  
Sbjct: 118 LSRKLFKGLENYQLHTVSSFCGYD 141


>gi|284162617|ref|YP_003401240.1| hypothetical protein Arcpr_1521 [Archaeoglobus profundus DSM
          5631]
 gi|284012614|gb|ADB58567.1| hypothetical protein Arcpr_1521 [Archaeoglobus profundus DSM
          5631]
          Length = 233

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 6/41 (14%)

Query: 7  MRK-----IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
          MR      I FDIETTGL S  DRI+ IG + + +    + 
Sbjct: 1  MRFVRFYPIFFDIETTGLKSLEDRIVAIG-IRVREEIFEDE 40


>gi|291327132|ref|ZP_06127108.2| oligoribonuclease [Providencia rettgeri DSM 1131]
 gi|291311676|gb|EFE52129.1| oligoribonuclease [Providencia rettgeri DSM 1131]
          Length = 187

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +++KN+   I  D+E TGLD   DRIIEI 
Sbjct: 6  IMQKNENNLIWIDLEMTGLDPVRDRIIEIA 35


>gi|148546369|ref|YP_001266471.1| ribonuclease T [Pseudomonas putida F1]
 gi|166200017|sp|A5VZH7|RNT_PSEP1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|148510427|gb|ABQ77287.1| RNAse T [Pseudomonas putida F1]
 gi|313497451|gb|ADR58817.1| Ribonuclease T [Pseudomonas putida BIRD-1]
          Length = 224

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV +      +     T+   + P  G    P AL+  G
Sbjct: 32  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGANIEPAALEFTG 91

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +       + A  + HN+ FD+GF+NA + R +  
Sbjct: 92  IKLDHPLRMAVSEESAMTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARNDLK 151

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    R  H A  D+   ++++  ++ 
Sbjct: 152 RNPFHPFSSFDTATLAGLAYGQTVLARACQSADIDFDGREAHSARYDTEKTAELFCGIVN 211

Query: 177 GGSQIN 182
              ++ 
Sbjct: 212 RWKEMG 217


>gi|16763172|ref|NP_458789.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. CT18]
 gi|16767599|ref|NP_463214.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|29144651|ref|NP_807993.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. Ty2]
 gi|56416144|ref|YP_153219.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|62182799|ref|YP_219216.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
 gi|161505144|ref|YP_001572256.1| oligoribonuclease [Salmonella enterica subsp. arizonae serovar
          62:z4,z23:-- str. RSK2980]
 gi|161617623|ref|YP_001591588.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi B str. SPB7]
 gi|167553558|ref|ZP_02347307.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA29]
 gi|167994766|ref|ZP_02575857.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          4,[5],12:i:- str. CVM23701]
 gi|168231388|ref|ZP_02656446.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Kentucky str. CDC 191]
 gi|168237081|ref|ZP_02662139.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. SL480]
 gi|168244869|ref|ZP_02669801.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Heidelberg str. SL486]
 gi|168263295|ref|ZP_02685268.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Hadar str. RI_05P066]
 gi|168467067|ref|ZP_02700915.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Newport str. SL317]
 gi|168822519|ref|ZP_02834519.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Weltevreden str. HI_N05-537]
 gi|194446159|ref|YP_002043608.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Newport str. SL254]
 gi|194451819|ref|YP_002048396.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Heidelberg str. SL476]
 gi|194472818|ref|ZP_03078802.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Kentucky str. CVM29188]
 gi|194733922|ref|YP_002117294.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. CVM19633]
 gi|197248139|ref|YP_002149267.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Agona str. SL483]
 gi|197263840|ref|ZP_03163914.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA23]
 gi|197365070|ref|YP_002144707.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. AKU_12601]
 gi|198244671|ref|YP_002218237.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Dublin str. CT_02021853]
 gi|200389037|ref|ZP_03215649.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Virchow str. SL491]
 gi|204927249|ref|ZP_03218451.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Javiana str. GA_MM04042433]
 gi|207859499|ref|YP_002246150.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|213052288|ref|ZP_03345166.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. E00-7866]
 gi|213419498|ref|ZP_03352564.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. E01-6750]
 gi|213428680|ref|ZP_03361430.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. E02-1180]
 gi|213583916|ref|ZP_03365742.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-0664]
 gi|213650568|ref|ZP_03380621.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. J185]
 gi|213850085|ref|ZP_03380983.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. M223]
 gi|238910511|ref|ZP_04654348.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Tennessee str. CDC07-0191]
 gi|289805592|ref|ZP_06536221.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. AG3]
 gi|289829989|ref|ZP_06547440.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-3139]
 gi|54038786|sp|P65600|ORN_SALTI RecName: Full=Oligoribonuclease
 gi|54041583|sp|P65599|ORN_SALTY RecName: Full=Oligoribonuclease
 gi|59797989|sp|Q5PLG7|ORN_SALPA RecName: Full=Oligoribonuclease
 gi|81309509|sp|Q57GM7|ORN_SALCH RecName: Full=Oligoribonuclease
 gi|25338361|pir||AI1047 oligoribonuclease (EC 3.1.-.-) [imported] - Salmonella enterica
          subsp. enterica serovar Typhi (strain CT18)
 gi|16422913|gb|AAL23173.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|16505480|emb|CAD06830.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi]
 gi|29140290|gb|AAO71853.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. Ty2]
 gi|56130401|gb|AAV79907.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|62130432|gb|AAX68135.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
 gi|160866491|gb|ABX23114.1| hypothetical protein SARI_03281 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
 gi|161366987|gb|ABX70755.1| hypothetical protein SPAB_05483 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194404822|gb|ACF65044.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Newport str. SL254]
 gi|194410123|gb|ACF70342.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Heidelberg str. SL476]
 gi|194459182|gb|EDX48021.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Kentucky str. CVM29188]
 gi|194709424|gb|ACF88645.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. CVM19633]
 gi|195630566|gb|EDX49178.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Newport str. SL317]
 gi|197096547|emb|CAR62157.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. AKU_12601]
 gi|197211842|gb|ACH49239.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Agona str. SL483]
 gi|197242095|gb|EDY24715.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA23]
 gi|197289951|gb|EDY29310.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. SL480]
 gi|197939187|gb|ACH76520.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Dublin str. CT_02021853]
 gi|199606135|gb|EDZ04680.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Virchow str. SL491]
 gi|204323914|gb|EDZ09109.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Javiana str. GA_MM04042433]
 gi|205322027|gb|EDZ09866.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA29]
 gi|205327412|gb|EDZ14176.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          4,[5],12:i:- str. CVM23701]
 gi|205334333|gb|EDZ21097.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Kentucky str. CDC 191]
 gi|205336339|gb|EDZ23103.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Heidelberg str. SL486]
 gi|205341098|gb|EDZ27862.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Weltevreden str. HI_N05-537]
 gi|205347926|gb|EDZ34557.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Hadar str. RI_05P066]
 gi|206711302|emb|CAR35680.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|261249445|emb|CBG27309.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. D23580]
 gi|267996684|gb|ACY91569.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. 14028S]
 gi|301160842|emb|CBW20373.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. SL1344]
 gi|312915451|dbj|BAJ39425.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. T000240]
 gi|320088780|emb|CBY98538.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Weltevreden str. 2007-60-3289-1]
 gi|321223225|gb|EFX48295.1| 3'-to-5' oligoribonuclease (orn) [Salmonella enterica subsp.
          enterica serovar Typhimurium str. TN061786]
 gi|322615515|gb|EFY12435.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 315996572]
 gi|322618575|gb|EFY15464.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 495297-1]
 gi|322622012|gb|EFY18862.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 495297-3]
 gi|322627084|gb|EFY23876.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 495297-4]
 gi|322631043|gb|EFY27807.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 515920-1]
 gi|322637738|gb|EFY34439.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 515920-2]
 gi|322642402|gb|EFY39006.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 531954]
 gi|322645663|gb|EFY42188.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. NC_MB110209-0054]
 gi|322650497|gb|EFY46905.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. OH_2009072675]
 gi|322653449|gb|EFY49779.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. CASC_09SCPH15965]
 gi|322659724|gb|EFY55967.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 19N]
 gi|322662065|gb|EFY58281.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 81038-01]
 gi|322666186|gb|EFY62364.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. MD_MDA09249507]
 gi|322672606|gb|EFY68717.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 414877]
 gi|322676036|gb|EFY72107.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 366867]
 gi|322680520|gb|EFY76558.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 413180]
 gi|322684586|gb|EFY80590.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 446600]
 gi|323192901|gb|EFZ78127.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 609458-1]
 gi|323197223|gb|EFZ82363.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 556150-1]
 gi|323201660|gb|EFZ86724.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 609460]
 gi|323206174|gb|EFZ91136.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 507440-20]
 gi|323213183|gb|EFZ97985.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 556152]
 gi|323215556|gb|EGA00300.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB101509-0077]
 gi|323219541|gb|EGA04026.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB102109-0047]
 gi|323227844|gb|EGA11998.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB110209-0055]
 gi|323229014|gb|EGA13143.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB111609-0052]
 gi|323236374|gb|EGA20450.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 2009083312]
 gi|323237506|gb|EGA21567.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 2009085258]
 gi|323241828|gb|EGA25857.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 315731156]
 gi|323248023|gb|EGA31960.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2009159199]
 gi|323254646|gb|EGA38457.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008282]
 gi|323258295|gb|EGA41972.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008283]
 gi|323259572|gb|EGA43206.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008284]
 gi|323265845|gb|EGA49341.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008285]
 gi|323270289|gb|EGA53737.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008287]
 gi|332991164|gb|AEF10147.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. UK-1]
          Length = 181

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 11 IDLEMTGLDPERDRIIEIA 29


>gi|26987821|ref|NP_743246.1| ribonuclease T [Pseudomonas putida KT2440]
 gi|37999414|sp|Q88NW8|RNT_PSEPK RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|24982520|gb|AAN66710.1|AE016299_6 ribonuclease T [Pseudomonas putida KT2440]
          Length = 203

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV +      +     T+   + P  G    P AL+  G
Sbjct: 11  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGANIEPAALEFTG 70

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +       + A  + HN+ FD+GF+NA + R +  
Sbjct: 71  IKLDHPLRMAVSEESAMTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARNDLK 130

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    R  H A  D+   ++++  ++ 
Sbjct: 131 RNPFHPFSSFDTATLAGLAYGQTVLARACQSADIDFDGREAHSARYDTEKTAELFCGIVN 190

Query: 177 GGSQIN 182
              ++ 
Sbjct: 191 RWKEMG 196


>gi|270293052|ref|ZP_06199263.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus sp. M143]
 gi|270279031|gb|EFA24877.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus sp. M143]
          Length = 157

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + +       +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIENGEII-NQYATDVNPH-EPLDSHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
             L   P FS +  + ++   +    ++AHN +FD  
Sbjct: 64  RRLAAAPEFSQVAGKIFELVKD--GIFVAHNVQFDAN 98


>gi|258512426|ref|YP_003185860.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479152|gb|ACV59471.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 218

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 4/174 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ET+G     D+I+ +         S+ + +F   +  +   + P  +         
Sbjct: 32  VLDLETSGFSPARDKILSVACATFSGWSSEPDESFYAIVRHDDVADVPSHIWELTGLTPE 91

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                    +              W+AH+ + D+GF+      + +  L P  +   +  
Sbjct: 92  AMRDGEPLEVALRRALELGA-GRVWVAHHVRHDLGFLQRATDALWRLRLRPLAMDTAVVA 150

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                 +    L+  C+  GI      +H A  D  + + V+ K M    ++  
Sbjct: 151 QVLARAARPLTLDEACEWLGIP--VVGRHRADADVRMTAAVWRKEMELCGRLGL 202


>gi|322831149|ref|YP_004211176.1| Exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602]
 gi|321166350|gb|ADW72049.1| Exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602]
          Length = 184

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 11 IDLEMTGLDPERDRIIEIA 29


>gi|255020848|ref|ZP_05292904.1| Oligoribonuclease [Acidithiobacillus caldus ATCC 51756]
 gi|254969639|gb|EET27145.1| Oligoribonuclease [Acidithiobacillus caldus ATCC 51756]
          Length = 200

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 5  NKMRKIVFDIETTGLDSKNDRIIEIGAVELLD 36
             R +  D+E TGL+ + D+I+EI ++   +
Sbjct: 4  KTQRLVWIDLEMTGLNPERDQILEIASIVTDN 35


>gi|53720090|ref|YP_109076.1| oligoribonuclease [Burkholderia pseudomallei K96243]
 gi|126451823|ref|YP_001067153.1| oligoribonuclease [Burkholderia pseudomallei 1106a]
 gi|134277998|ref|ZP_01764713.1| oligoribonuclease [Burkholderia pseudomallei 305]
 gi|167816819|ref|ZP_02448499.1| oligoribonuclease [Burkholderia pseudomallei 91]
 gi|167846725|ref|ZP_02472233.1| oligoribonuclease [Burkholderia pseudomallei B7210]
 gi|217420377|ref|ZP_03451882.1| oligoribonuclease [Burkholderia pseudomallei 576]
 gi|237813261|ref|YP_002897712.1| oligoribonuclease [Burkholderia pseudomallei MSHR346]
 gi|242316244|ref|ZP_04815260.1| oligoribonuclease [Burkholderia pseudomallei 1106b]
 gi|59798009|sp|Q63S41|ORN_BURPS RecName: Full=Oligoribonuclease
 gi|166215755|sp|A3NXT2|ORN_BURP0 RecName: Full=Oligoribonuclease
 gi|52210504|emb|CAH36487.1| oligoribonuclease [Burkholderia pseudomallei K96243]
 gi|126225465|gb|ABN89005.1| oligoribonuclease [Burkholderia pseudomallei 1106a]
 gi|134251648|gb|EBA51727.1| oligoribonuclease [Burkholderia pseudomallei 305]
 gi|217395789|gb|EEC35806.1| oligoribonuclease [Burkholderia pseudomallei 576]
 gi|237503180|gb|ACQ95498.1| oligoribonuclease [Burkholderia pseudomallei MSHR346]
 gi|242139483|gb|EES25885.1| oligoribonuclease [Burkholderia pseudomallei 1106b]
          Length = 201

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGLD   DRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLDPDTDRIIEIAVV 43


>gi|238026568|ref|YP_002910799.1| oligoribonuclease [Burkholderia glumae BGR1]
 gi|237875762|gb|ACR28095.1| Oligoribonuclease (3'-5' exoribonuclease) [Burkholderia glumae
          BGR1]
          Length = 202

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGL+  +DRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLNPDSDRIIEIAVV 43


>gi|115375897|ref|ZP_01463146.1| DNA polymerase III PolC-type, putative [Stigmatella aurantiaca
          DW4/3-1]
 gi|310819816|ref|YP_003952174.1| exonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|115367075|gb|EAU66061.1| DNA polymerase III PolC-type, putative [Stigmatella aurantiaca
          DW4/3-1]
 gi|309392888|gb|ADO70347.1| Exonuclease [Stigmatella aurantiaca DW4/3-1]
          Length = 219

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNG--RKNSPEALKLHGITD 67
            D+ETTGLD+    ++E+  + +   S      ++  + P      +           +
Sbjct: 33 FIDLETTGLDASRHEVLEVAILRVDARSLKVLAEYEARVQPTRLADAHPEALAVCGYSDE 92

Query: 68 EFLKDKP 74
          E+    P
Sbjct: 93 EWRDALP 99


>gi|167720628|ref|ZP_02403864.1| oligoribonuclease [Burkholderia pseudomallei DM98]
 gi|167903697|ref|ZP_02490902.1| oligoribonuclease [Burkholderia pseudomallei NCTC 13177]
 gi|254181122|ref|ZP_04887720.1| oligoribonuclease [Burkholderia pseudomallei 1655]
 gi|184211661|gb|EDU08704.1| oligoribonuclease [Burkholderia pseudomallei 1655]
          Length = 201

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGLD   DRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLDPDTDRIIEIAVV 43


>gi|332525250|ref|ZP_08401423.1| oligoribonuclease [Rubrivivax benzoatilyticus JA2]
 gi|332108532|gb|EGJ09756.1| oligoribonuclease [Rubrivivax benzoatilyticus JA2]
          Length = 186

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL    DRIIEI  V
Sbjct: 16 IDLEMTGLYPATDRIIEIAVV 36


>gi|294499074|ref|YP_003562774.1| exonuclease family protein [Bacillus megaterium QM B1551]
 gi|294349011|gb|ADE69340.1| exonuclease family protein [Bacillus megaterium QM B1551]
          Length = 197

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 3/160 (1%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69
           V D+ETTGL ++   IIE+    +   S T     +             +          
Sbjct: 11  VLDVETTGLSAQTCDIIELAIAVVSYDSSTGEIIDIVEEYEEFNMPSTPIFPYITNLTGI 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
             +     ++  +  +      +  IAHNA FD  F+    +  +         +  +  
Sbjct: 71  TNEMVKNKTLDDKKVESLLTSVSAIIAHNASFDRSFLL--KRYPSLFNQKWHCSMRAVKW 128

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                P+ +              +HR+         LL  
Sbjct: 129 KEYGFPNKKLTTLLDHHNIEREHAHRAMDDVKGTIDLLRQ 168


>gi|167552492|ref|ZP_02346245.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|197251607|ref|YP_002146145.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197215310|gb|ACH52707.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205322894|gb|EDZ10733.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 232

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +         + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +        + P +    +      
Sbjct: 59  ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLP-------ELPGEWICTMKLSRRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMQT 153


>gi|89110885|ref|AP_004665.1| oligoribonuclease [Escherichia coli str. K-12 substr. W3110]
 gi|90111697|ref|NP_418586.4| oligoribonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|157155866|ref|YP_001465662.1| oligoribonuclease [Escherichia coli E24377A]
 gi|157163628|ref|YP_001460946.1| oligoribonuclease [Escherichia coli HS]
 gi|161486014|ref|NP_757097.2| oligoribonuclease [Escherichia coli CFT073]
 gi|161949984|ref|YP_405804.2| oligoribonuclease [Shigella dysenteriae Sd197]
 gi|161986383|ref|YP_313069.2| oligoribonuclease [Shigella sonnei Ss046]
 gi|170021825|ref|YP_001726779.1| oligoribonuclease [Escherichia coli ATCC 8739]
 gi|170083611|ref|YP_001732931.1| oligoribonuclease [Escherichia coli str. K-12 substr. DH10B]
 gi|170681955|ref|YP_001746560.1| oligoribonuclease [Escherichia coli SMS-3-5]
 gi|187730220|ref|YP_001882856.1| oligoribonuclease [Shigella boydii CDC 3083-94]
 gi|188495936|ref|ZP_03003206.1| oligoribonuclease [Escherichia coli 53638]
 gi|191165629|ref|ZP_03027469.1| oligoribonuclease [Escherichia coli B7A]
 gi|193065728|ref|ZP_03046792.1| oligoribonuclease [Escherichia coli E22]
 gi|194428928|ref|ZP_03061461.1| oligoribonuclease [Escherichia coli B171]
 gi|194437211|ref|ZP_03069309.1| oligoribonuclease [Escherichia coli 101-1]
 gi|215489509|ref|YP_002331940.1| oligoribonuclease [Escherichia coli O127:H6 str. E2348/69]
 gi|218556717|ref|YP_002389631.1| oligoribonuclease [Escherichia coli IAI1]
 gi|218561324|ref|YP_002394237.1| oligoribonuclease [Escherichia coli S88]
 gi|218692499|ref|YP_002400711.1| oligoribonuclease [Escherichia coli ED1a]
 gi|218697914|ref|YP_002405581.1| oligoribonuclease [Escherichia coli 55989]
 gi|218702862|ref|YP_002410491.1| oligoribonuclease [Escherichia coli IAI39]
 gi|218707776|ref|YP_002415295.1| oligoribonuclease [Escherichia coli UMN026]
 gi|229560203|ref|YP_672251.2| oligoribonuclease [Escherichia coli 536]
 gi|229775946|ref|YP_859834.2| oligoribonuclease [Escherichia coli APEC O1]
 gi|238903272|ref|YP_002929068.1| oligoribonuclease [Escherichia coli BW2952]
 gi|253775210|ref|YP_003038041.1| oligoribonuclease [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254164094|ref|YP_003047202.1| oligoribonuclease [Escherichia coli B str. REL606]
 gi|256019810|ref|ZP_05433675.1| oligoribonuclease [Shigella sp. D9]
 gi|256025100|ref|ZP_05438965.1| oligoribonuclease [Escherichia sp. 4_1_40B]
 gi|260846995|ref|YP_003224773.1| oligoribonuclease Orn [Escherichia coli O103:H2 str. 12009]
 gi|260858318|ref|YP_003232209.1| oligoribonuclease Orn [Escherichia coli O26:H11 str. 11368]
 gi|260870927|ref|YP_003237329.1| oligoribonuclease Orn [Escherichia coli O111:H- str. 11128]
 gi|293402792|ref|ZP_06646889.1| oligoribonuclease [Escherichia coli FVEC1412]
 gi|293407892|ref|ZP_06651732.1| oligoribonuclease [Escherichia coli B354]
 gi|293417668|ref|ZP_06660290.1| orn oligoribonuclease [Escherichia coli B185]
 gi|293476475|ref|ZP_06664883.1| orn [Escherichia coli B088]
 gi|297518431|ref|ZP_06936817.1| oligoribonuclease [Escherichia coli OP50]
 gi|298378322|ref|ZP_06988206.1| oligoribonuclease [Escherichia coli FVEC1302]
 gi|301027985|ref|ZP_07191269.1| exonuclease [Escherichia coli MS 196-1]
 gi|306815620|ref|ZP_07449769.1| oligoribonuclease [Escherichia coli NC101]
 gi|307140859|ref|ZP_07500215.1| oligoribonuclease [Escherichia coli H736]
 gi|307312001|ref|ZP_07591638.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W]
 gi|309787669|ref|ZP_07682280.1| exonuclease family protein [Shigella dysenteriae 1617]
 gi|312965838|ref|ZP_07780064.1| exonuclease family protein [Escherichia coli 2362-75]
 gi|312974028|ref|ZP_07788199.1| exonuclease family protein [Escherichia coli 1827-70]
 gi|331644912|ref|ZP_08346029.1| oligoribonuclease [Escherichia coli H736]
 gi|331650290|ref|ZP_08351362.1| oligoribonuclease [Escherichia coli M605]
 gi|331655993|ref|ZP_08356981.1| oligoribonuclease [Escherichia coli M718]
 gi|331660740|ref|ZP_08361672.1| oligoribonuclease [Escherichia coli TA206]
 gi|331671070|ref|ZP_08371903.1| oligoribonuclease [Escherichia coli TA271]
 gi|331671316|ref|ZP_08372114.1| oligoribonuclease [Escherichia coli TA280]
 gi|331680295|ref|ZP_08380954.1| oligoribonuclease [Escherichia coli H591]
 gi|331681184|ref|ZP_08381821.1| oligoribonuclease [Escherichia coli H299]
 gi|67469688|sp|P0A784|ORN_ECOLI RecName: Full=Oligoribonuclease
 gi|67469689|sp|P0A785|ORN_ECOL6 RecName: Full=Oligoribonuclease
 gi|166918637|sp|A7ZV33|ORN_ECO24 RecName: Full=Oligoribonuclease
 gi|166918638|sp|A8A7Q9|ORN_ECOHS RecName: Full=Oligoribonuclease
 gi|85676916|dbj|BAE78166.1| oligoribonuclease [Escherichia coli str. K12 substr. W3110]
 gi|87082382|gb|AAC77122.2| oligoribonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|157069308|gb|ABV08563.1| oligoribonuclease [Escherichia coli HS]
 gi|157077896|gb|ABV17604.1| oligoribonuclease [Escherichia coli E24377A]
 gi|169756753|gb|ACA79452.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli ATCC
          8739]
 gi|169891446|gb|ACB05153.1| oligoribonuclease [Escherichia coli str. K-12 substr. DH10B]
 gi|170519673|gb|ACB17851.1| oligoribonuclease [Escherichia coli SMS-3-5]
 gi|187427212|gb|ACD06486.1| oligoribonuclease [Shigella boydii CDC 3083-94]
 gi|188491135|gb|EDU66238.1| oligoribonuclease [Escherichia coli 53638]
 gi|190904324|gb|EDV64033.1| oligoribonuclease [Escherichia coli B7A]
 gi|192926597|gb|EDV81227.1| oligoribonuclease [Escherichia coli E22]
 gi|194412981|gb|EDX29270.1| oligoribonuclease [Escherichia coli B171]
 gi|194423767|gb|EDX39756.1| oligoribonuclease [Escherichia coli 101-1]
 gi|215267581|emb|CAS12036.1| oligoribonuclease [Escherichia coli O127:H6 str. E2348/69]
 gi|218354646|emb|CAV01632.1| oligoribonuclease [Escherichia coli 55989]
 gi|218363486|emb|CAR01140.1| oligoribonuclease [Escherichia coli IAI1]
 gi|218368093|emb|CAR05900.1| oligoribonuclease [Escherichia coli S88]
 gi|218372848|emb|CAR20727.1| oligoribonuclease [Escherichia coli IAI39]
 gi|218430063|emb|CAR10906.1| oligoribonuclease [Escherichia coli ED1a]
 gi|218434873|emb|CAR15811.1| oligoribonuclease [Escherichia coli UMN026]
 gi|222035935|emb|CAP78680.1| Oligoribonuclease [Escherichia coli LF82]
 gi|238861937|gb|ACR63935.1| oligoribonuclease [Escherichia coli BW2952]
 gi|242379688|emb|CAQ34511.1| oligoribonuclease monomer, subunit of oligoribonuclease
          [Escherichia coli BL21(DE3)]
 gi|253326254|gb|ACT30856.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253975995|gb|ACT41666.1| oligoribonuclease [Escherichia coli B str. REL606]
 gi|253980151|gb|ACT45821.1| oligoribonuclease [Escherichia coli BL21(DE3)]
 gi|257756967|dbj|BAI28469.1| oligoribonuclease Orn [Escherichia coli O26:H11 str. 11368]
 gi|257762142|dbj|BAI33639.1| oligoribonuclease Orn [Escherichia coli O103:H2 str. 12009]
 gi|257767283|dbj|BAI38778.1| oligoribonuclease Orn [Escherichia coli O111:H- str. 11128]
 gi|260451008|gb|ACX41430.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli DH1]
 gi|284924347|emb|CBG37463.1| oligoribonuclease [Escherichia coli 042]
 gi|291320928|gb|EFE60370.1| orn [Escherichia coli B088]
 gi|291429707|gb|EFF02721.1| oligoribonuclease [Escherichia coli FVEC1412]
 gi|291430386|gb|EFF03384.1| orn oligoribonuclease [Escherichia coli B185]
 gi|291472143|gb|EFF14625.1| oligoribonuclease [Escherichia coli B354]
 gi|294490725|gb|ADE89481.1| oligoribonuclease [Escherichia coli IHE3034]
 gi|298280656|gb|EFI22157.1| oligoribonuclease [Escherichia coli FVEC1302]
 gi|299878895|gb|EFI87106.1| exonuclease [Escherichia coli MS 196-1]
 gi|305851282|gb|EFM51737.1| oligoribonuclease [Escherichia coli NC101]
 gi|306907808|gb|EFN38309.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W]
 gi|307556332|gb|ADN49107.1| oligoribonuclease [Escherichia coli ABU 83972]
 gi|307629236|gb|ADN73540.1| oligoribonuclease [Escherichia coli UM146]
 gi|308924419|gb|EFP69915.1| exonuclease family protein [Shigella dysenteriae 1617]
 gi|309704670|emb|CBJ04020.1| oligoribonuclease [Escherichia coli ETEC H10407]
 gi|310331562|gb|EFP98818.1| exonuclease family protein [Escherichia coli 1827-70]
 gi|312289081|gb|EFR16975.1| exonuclease family protein [Escherichia coli 2362-75]
 gi|312948814|gb|ADR29641.1| oligoribonuclease [Escherichia coli O83:H1 str. NRG 857C]
 gi|315063479|gb|ADT77806.1| oligoribonuclease [Escherichia coli W]
 gi|315138719|dbj|BAJ45878.1| oligoribonuclease [Escherichia coli DH1]
 gi|320173681|gb|EFW48871.1| 3'-to-5' oligoribonuclease (orn) [Shigella dysenteriae CDC
          74-1112]
 gi|320193545|gb|EFW68182.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli WV_060327]
 gi|323156018|gb|EFZ42180.1| exonuclease family protein [Escherichia coli EPECa14]
 gi|323166646|gb|EFZ52404.1| exonuclease family protein [Shigella sonnei 53G]
 gi|323171596|gb|EFZ57242.1| exonuclease family protein [Escherichia coli LT-68]
 gi|323176077|gb|EFZ61669.1| exonuclease family protein [Escherichia coli 1180]
 gi|323182271|gb|EFZ67681.1| exonuclease family protein [Escherichia coli 1357]
 gi|323189956|gb|EFZ75234.1| exonuclease family protein [Escherichia coli RN587/1]
 gi|323380442|gb|ADX52710.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli
          KO11]
 gi|323935480|gb|EGB31818.1| exonuclease [Escherichia coli E1520]
 gi|323940084|gb|EGB36278.1| exonuclease [Escherichia coli E482]
 gi|323946101|gb|EGB42137.1| exonuclease [Escherichia coli H120]
 gi|323950766|gb|EGB46644.1| exonuclease [Escherichia coli H252]
 gi|323955595|gb|EGB51358.1| exonuclease [Escherichia coli H263]
 gi|323960351|gb|EGB55990.1| exonuclease [Escherichia coli H489]
 gi|323965551|gb|EGB61005.1| exonuclease [Escherichia coli M863]
 gi|323970580|gb|EGB65839.1| exonuclease [Escherichia coli TA007]
 gi|324118730|gb|EGC12622.1| exonuclease [Escherichia coli E1167]
 gi|327250105|gb|EGE61824.1| exonuclease family protein [Escherichia coli STEC_7v]
 gi|330908507|gb|EGH37026.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli AA86]
 gi|331035887|gb|EGI08125.1| oligoribonuclease [Escherichia coli H736]
 gi|331040684|gb|EGI12842.1| oligoribonuclease [Escherichia coli M605]
 gi|331046347|gb|EGI18437.1| oligoribonuclease [Escherichia coli M718]
 gi|331051782|gb|EGI23821.1| oligoribonuclease [Escherichia coli TA206]
 gi|331061659|gb|EGI33585.1| oligoribonuclease [Escherichia coli TA271]
 gi|331071161|gb|EGI42518.1| oligoribonuclease [Escherichia coli TA280]
 gi|331071758|gb|EGI43094.1| oligoribonuclease [Escherichia coli H591]
 gi|331081405|gb|EGI52566.1| oligoribonuclease [Escherichia coli H299]
 gi|332346241|gb|AEE59575.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 181

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|161525395|ref|YP_001580407.1| oligoribonuclease [Burkholderia multivorans ATCC 17616]
 gi|189349868|ref|YP_001945496.1| oligoribonuclease [Burkholderia multivorans ATCC 17616]
 gi|221201292|ref|ZP_03574332.1| oligoribonuclease [Burkholderia multivorans CGD2M]
 gi|221206254|ref|ZP_03579267.1| oligoribonuclease [Burkholderia multivorans CGD2]
 gi|160342824|gb|ABX15910.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
          multivorans ATCC 17616]
 gi|189333890|dbj|BAG42960.1| oligoribonuclease [Burkholderia multivorans ATCC 17616]
 gi|221173563|gb|EEE05997.1| oligoribonuclease [Burkholderia multivorans CGD2]
 gi|221179142|gb|EEE11549.1| oligoribonuclease [Burkholderia multivorans CGD2M]
          Length = 211

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGLD  NDRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43


>gi|302059908|ref|ZP_07251449.1| ribonuclease T [Pseudomonas syringae pv. tomato K40]
          Length = 225

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP------NGRKNSPEA 59
           +V D+ET G +S  D ++EI AV +      +     T+   + P               
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFTG 92

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116
           +KL       + ++ + + IF                 + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    R  H A  D+   ++++  ++ 
Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKPAELFCGIVN 212

Query: 177 GGSQIN 182
              ++ 
Sbjct: 213 RWKEMG 218


>gi|295704398|ref|YP_003597473.1| exonuclease family protein [Bacillus megaterium DSM 319]
 gi|294802057|gb|ADF39123.1| exonuclease family protein [Bacillus megaterium DSM 319]
          Length = 197

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 3/160 (1%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69
           V D+ETTGL ++   IIE+    +   S T     +             +          
Sbjct: 11  VLDVETTGLSAQTCDIIELAIAVVSYDSSTGEIIDIVEEYEEFNMPSTPIFPYITNLTGI 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
             +     ++  +  +      +  IAHNA FD  F+    +  +         +  +  
Sbjct: 71  TNEMVKNKTLDDKKVESLLTSVSAIIAHNASFDRSFLL--KRYPSLSNQKWHCSMRAVKW 128

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                P+ +              +HR+         LL  
Sbjct: 129 KEYGFPNKKLTTLLDHHNIEREHAHRAMDDVKGTIDLLRQ 168


>gi|205355112|ref|YP_002228913.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 287/91]
 gi|205274893|emb|CAR39959.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 287/91]
          Length = 181

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 11 IDLEMTGLDPERDRIIEIA 29


>gi|319935781|ref|ZP_08010210.1| hypothetical protein HMPREF9488_01041 [Coprobacillus sp. 29_1]
 gi|319809216|gb|EFW05665.1| hypothetical protein HMPREF9488_01041 [Coprobacillus sp. 29_1]
          Length = 301

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 69/214 (32%), Gaps = 9/214 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  VFDIE   L+     +  IG VELLD    + T+   + P          K+H I  
Sbjct: 4   RITVFDIE--VLNQDPASVCAIGIVELLDQQVIS-TYYSLVKPRNLSYDVYRYKVHKIKT 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L  +  F  ++ +   +F                G +      + ++ +    +  + 
Sbjct: 61  KSLLKERPFQDVWKDIHHYFENTIVVS-----HDIQGDMMNLRAVLKQNHISYPHLYMSC 115

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS-QINFGFK 186
           +              ++ +   +       H AL D+   + + I+M+     +      
Sbjct: 116 TNVLAHLVYPDLHKYNVKELSQMIGFEFQAHHALDDAKACAQILIEMLKYEHCETLQELH 175

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
                 F E K+      +     P    +++ E
Sbjct: 176 QRFHLDFGEMKENYYRNIISAEIAPQLRELSQRE 209


>gi|300715033|ref|YP_003739836.1| Oligoribonuclease [Erwinia billingiae Eb661]
 gi|299060869|emb|CAX57976.1| Oligoribonuclease [Erwinia billingiae Eb661]
          Length = 181

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 11 IDLEMTGLDPEQDRIIEIA 29


>gi|297155821|gb|ADI05533.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
          BCW-1]
          Length = 241

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG+D + DRI+    V            +  + P G      A  +HG+TD  L
Sbjct: 11 AFDTETTGIDVEQDRIVSAALVVQRGAGSLPEVRRWLVSP-GIPVPEAASAIHGLTDSHL 69

Query: 71 KDKPSFSSI 79
          +    + + 
Sbjct: 70 QRHGRWPAP 78


>gi|167837413|ref|ZP_02464296.1| oligoribonuclease [Burkholderia thailandensis MSMB43]
          Length = 201

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGL    DRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLSPDTDRIIEIAVV 43


>gi|237785374|ref|YP_002906079.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758286|gb|ACR17536.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 555

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 7/174 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS--PEALKLHGIT 66
            I FD+ET   +  N  I + G V   +  +   +      P        P    +HGIT
Sbjct: 223 FIAFDVET--ANEANGSICQFGVVVYHEGKE-AESHTWLCQPPSAWPDFTPATTAIHGIT 279

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + ++PS      +      ++N   +AHNAKFD+  +    +    D    +     
Sbjct: 280 PDKVANEPSCHDRLEQLAALLRKENLPIVAHNAKFDMVALRDAARAEKVDIPHITFACTY 339

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           L             L ++ +  G    H   H AL D+    ++ + +     +
Sbjct: 340 LLARALHPELPNYKLTTVAQSAGSEAFH--HHDALADARACGEIMLSLCGISPR 391


>gi|209921653|ref|YP_002295737.1| oligoribonuclease [Escherichia coli SE11]
 gi|209914912|dbj|BAG79986.1| oligoribonuclease [Escherichia coli SE11]
 gi|320200705|gb|EFW75291.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli EC4100B]
          Length = 181

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|161485837|ref|NP_710030.3| oligoribonuclease [Shigella flexneri 2a str. 301]
 gi|161486369|ref|NP_839708.2| oligoribonuclease [Shigella flexneri 2a str. 2457T]
 gi|229774924|ref|YP_691603.2| oligoribonuclease [Shigella flexneri 5 str. 8401]
 gi|41017443|sp|Q83IJ9|ORN_SHIFL RecName: Full=Oligoribonuclease
 gi|313646361|gb|EFS10823.1| exonuclease family protein [Shigella flexneri 2a str. 2457T]
 gi|332749041|gb|EGJ79464.1| exonuclease family protein [Shigella flexneri K-671]
 gi|332749309|gb|EGJ79730.1| exonuclease family protein [Shigella flexneri 4343-70]
 gi|332761883|gb|EGJ92157.1| exonuclease family protein [Shigella flexneri 2747-71]
 gi|332763212|gb|EGJ93455.1| oligoribonuclease monomer [Shigella flexneri 2930-71]
 gi|333009212|gb|EGK28668.1| exonuclease family protein [Shigella flexneri K-218]
 gi|333010312|gb|EGK29745.1| exonuclease family protein [Shigella flexneri VA-6]
 gi|333011977|gb|EGK31362.1| exonuclease family protein [Shigella flexneri K-304]
          Length = 181

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|53724753|ref|YP_102207.1| oligoribonuclease [Burkholderia mallei ATCC 23344]
 gi|67642879|ref|ZP_00441630.1| oligoribonuclease [Burkholderia mallei GB8 horse 4]
 gi|121598453|ref|YP_993837.1| oligoribonuclease [Burkholderia mallei SAVP1]
 gi|124385187|ref|YP_001026898.1| oligoribonuclease [Burkholderia mallei NCTC 10229]
 gi|126441737|ref|YP_001059867.1| oligoribonuclease [Burkholderia pseudomallei 668]
 gi|126450125|ref|YP_001079814.1| oligoribonuclease [Burkholderia mallei NCTC 10247]
 gi|166999773|ref|ZP_02265607.1| oligoribonuclease [Burkholderia mallei PRL-20]
 gi|167739617|ref|ZP_02412391.1| oligoribonuclease [Burkholderia pseudomallei 14]
 gi|167825224|ref|ZP_02456695.1| oligoribonuclease [Burkholderia pseudomallei 9]
 gi|167895311|ref|ZP_02482713.1| oligoribonuclease [Burkholderia pseudomallei 7894]
 gi|167911947|ref|ZP_02499038.1| oligoribonuclease [Burkholderia pseudomallei 112]
 gi|167919939|ref|ZP_02507030.1| oligoribonuclease [Burkholderia pseudomallei BCC215]
 gi|226197920|ref|ZP_03793494.1| oligoribonuclease [Burkholderia pseudomallei Pakistan 9]
 gi|254176983|ref|ZP_04883640.1| oligoribonuclease [Burkholderia mallei ATCC 10399]
 gi|254208872|ref|ZP_04915220.1| oligoribonuclease [Burkholderia mallei JHU]
 gi|254259729|ref|ZP_04950783.1| oligoribonuclease [Burkholderia pseudomallei 1710a]
 gi|254295656|ref|ZP_04963114.1| oligoribonuclease [Burkholderia pseudomallei 406e]
 gi|59798006|sp|Q62M61|ORN_BURMA RecName: Full=Oligoribonuclease
 gi|166215752|sp|A3MHS8|ORN_BURM7 RecName: Full=Oligoribonuclease
 gi|166215753|sp|A2S4M9|ORN_BURM9 RecName: Full=Oligoribonuclease
 gi|166215754|sp|A1V6I4|ORN_BURMS RecName: Full=Oligoribonuclease
 gi|166215756|sp|A3NBZ6|ORN_BURP6 RecName: Full=Oligoribonuclease
 gi|52428176|gb|AAU48769.1| oligoribonuclease [Burkholderia mallei ATCC 23344]
 gi|121227263|gb|ABM49781.1| oligoribonuclease [Burkholderia mallei SAVP1]
 gi|124293207|gb|ABN02476.1| oligoribonuclease [Burkholderia mallei NCTC 10229]
 gi|126221230|gb|ABN84736.1| oligoribonuclease [Burkholderia pseudomallei 668]
 gi|126242995|gb|ABO06088.1| oligoribonuclease [Burkholderia mallei NCTC 10247]
 gi|147750748|gb|EDK57817.1| oligoribonuclease [Burkholderia mallei JHU]
 gi|157805488|gb|EDO82658.1| oligoribonuclease [Burkholderia pseudomallei 406e]
 gi|160698024|gb|EDP87994.1| oligoribonuclease [Burkholderia mallei ATCC 10399]
 gi|225930108|gb|EEH26121.1| oligoribonuclease [Burkholderia pseudomallei Pakistan 9]
 gi|238524093|gb|EEP87528.1| oligoribonuclease [Burkholderia mallei GB8 horse 4]
 gi|243064261|gb|EES46447.1| oligoribonuclease [Burkholderia mallei PRL-20]
 gi|254218418|gb|EET07802.1| oligoribonuclease [Burkholderia pseudomallei 1710a]
          Length = 201

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGLD   DRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLDPDTDRIIEIAVV 43


>gi|69245046|ref|ZP_00603204.1| Exonuclease [Enterococcus faecium DO]
 gi|314947594|ref|ZP_07851004.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0082]
 gi|68196047|gb|EAN10479.1| Exonuclease [Enterococcus faecium DO]
 gi|313645987|gb|EFS10567.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0082]
          Length = 201

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + +      +  V + +    +  F   + P         +++HGI 
Sbjct: 25  MNFVAMDFET--ANHQPYSACSLALVMVKNSQIVDE-FYTLIQPETPFF-WRNVQIHGIH 80

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +++ P F  ++     +F +     +AHNA FD   +   L   + +  +   +   
Sbjct: 81  QEDVRNAPKFPEVWQTIQPYFQKNRLV-VAHNAAFDTKVLAGCLDYYHLEQPNYLSLCTV 139

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            S  R       + LN++C+   I + H   H AL DS   +++ +
Sbjct: 140 KSSRRLFPEFPNHRLNTVCENLNIQLDH--HHDALEDSRACAEILL 183


>gi|124025389|ref|YP_001014505.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. NATL1A]
 gi|123960457|gb|ABM75240.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. NATL1A]
          Length = 292

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 76/172 (44%), Gaps = 8/172 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             ++ D ETTGLD++ND  +E+G++     S++    Q FL P    N+ +         
Sbjct: 67  NILILDTETTGLDNENDDCLEVGSILFNVKSRSVLAQQSFLLPVEINNAEK----INNIP 122

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P   S   ++++     +   +AHNA+FD  +    L+++ +        +D +
Sbjct: 123 AEITRLPQPLSEAIKYFESLVRVSNVIVAHNAEFDKKWFG--LKKLPQIEKPWICSMDDI 180

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +    +   +R  +  L   YG+ +   + H AL D   L++V+I+      
Sbjct: 181 TWPADRQLKTRPSVRDLALAYGVPVW--NAHRALTDCIYLAEVFIRCTELEK 230


>gi|51596199|ref|YP_070390.1| Orf81 bacteriophage 186 [Yersinia pseudotuberculosis IP 32953]
 gi|51589481|emb|CAH21103.1| similar to Orf81 bacteriophage 186 [Yersinia pseudotuberculosis IP
           32953]
          Length = 217

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 6/141 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             ++ D ETTGL   +  IIEI  ++              + P  +    E   +HGIT+
Sbjct: 44  NYLILDTETTGLG-NDAEIIEISIIDCTGKIL----LDTLVKP-LKAIPAEVTAIHGITN 97

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + D P++  I  +F    N++            + F  A                + +
Sbjct: 98  EMVADAPTWRDIHYQFMTLTNDRTLLIYNALFDSRLIFQTAAANNCPVPEKKYIFDAECV 157

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
             +  K+    +   +  K  
Sbjct: 158 MESYAKYYGQWDQKRNKFKWQ 178


>gi|256839708|ref|ZP_05545217.1| exonuclease [Parabacteroides sp. D13]
 gi|256738638|gb|EEU51963.1| exonuclease [Parabacteroides sp. D13]
          Length = 192

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 73/183 (39%), Gaps = 19/183 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGI 65
           M+ + FD+ETTG+    + + +I   E++    T  +F   +CP+ +     EAL++  +
Sbjct: 1   MKLLFFDLETTGIKYWRNGVHQISG-EIVIDGVTKESFNFNVCPHPQCEIEEEALRICNV 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-----------------A 108
           + E ++  P    ++ +F +  ++   ++   +  F VG+ N                  
Sbjct: 60  SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQNGDN 119

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                         ++ T  + R++H  +     ++ +  GI I     H A  D  L  
Sbjct: 120 YFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLTK 179

Query: 169 DVY 171
            +Y
Sbjct: 180 KIY 182


>gi|254195663|ref|ZP_04902090.1| oligoribonuclease [Burkholderia pseudomallei S13]
 gi|169652409|gb|EDS85102.1| oligoribonuclease [Burkholderia pseudomallei S13]
          Length = 203

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGLD   DRIIEI  V
Sbjct: 17 RNELNLVWLDMEMTGLDPDTDRIIEIAVV 45


>gi|161984789|ref|YP_410541.2| oligoribonuclease [Shigella boydii Sb227]
 gi|320183731|gb|EFW58568.1| 3'-to-5' oligoribonuclease (orn) [Shigella flexneri CDC 796-83]
 gi|320187043|gb|EFW61754.1| 3'-to-5' oligoribonuclease (orn) [Shigella flexneri CDC 796-83]
 gi|332087020|gb|EGI92154.1| exonuclease family protein [Shigella boydii 3594-74]
          Length = 181

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|297690291|ref|XP_002822553.1| PREDICTED: oligoribonuclease, mitochondrial-like isoform 2 [Pongo
           abelii]
          Length = 222

 Score = 45.3 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 9/149 (6%)

Query: 1   MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSP 57
           M     M  R +  D+E TGLD + D+IIE+  +       T+    +    PN     P
Sbjct: 33  MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL------ITDSDLNILAEGPNLIIKQP 86

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           + L                   F  F           +A N+  +      +        
Sbjct: 87  DELLDSMSDWCKEHHGKQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKH 146

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCK 146
           L    I  +      +         +  K
Sbjct: 147 LHYRIIDVSTVKELCRRWYPEEYEFAPKK 175


>gi|296118714|ref|ZP_06837290.1| oligoribonuclease [Corynebacterium ammoniagenes DSM 20306]
 gi|295968203|gb|EFG81452.1| oligoribonuclease [Corynebacterium ammoniagenes DSM 20306]
          Length = 222

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD K   I+EI A+
Sbjct: 22 RLVWIDLEMTGLDPKRHTIVEIAAI 46


>gi|241895341|ref|ZP_04782637.1| hypothetical protein HMPREF0877_0611 [Weissella paramesenteroides
          ATCC 33313]
 gi|241871315|gb|EER75066.1| hypothetical protein HMPREF0877_0611 [Weissella paramesenteroides
          ATCC 33313]
          Length = 183

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
          M+  N    +VFD+E  G    +++IIEIGA+++       + F V + 
Sbjct: 1  MLFTNLKNYVVFDLEMNG----SNQIIEIGAIKVTGSQNIEK-FSVIVN 44


>gi|156932395|ref|YP_001436311.1| oligoribonuclease [Cronobacter sakazakii ATCC BAA-894]
 gi|156530649|gb|ABU75475.1| hypothetical protein ESA_00171 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 185

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 5  MSANENNLIWIDLEMTGLDPRQDRIIEIA 33


>gi|146310013|ref|YP_001175087.1| oligoribonuclease [Enterobacter sp. 638]
 gi|166918639|sp|A4W5Q6|ORN_ENT38 RecName: Full=Oligoribonuclease
 gi|145316889|gb|ABP59036.1| Exonuclease, RNase T and DNA polymerase III [Enterobacter sp.
          638]
          Length = 181

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 11 IDLEMTGLDPERDRIIEIA 29


>gi|311281283|ref|YP_003943514.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae
          SCF1]
 gi|308750478|gb|ADO50230.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae
          SCF1]
          Length = 181

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 11 IDLEMTGLDPERDRIIEIA 29


>gi|213161996|ref|ZP_03347706.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
          str. E00-7866]
          Length = 104

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP 50
          +V D+ET G ++K D ++EI A+ L      +   + T    + P
Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEP 64


>gi|90420422|ref|ZP_01228329.1| polymerase III, epsilon subunit and related 3'-5' exonucleases
          [Aurantimonas manganoxydans SI85-9A1]
 gi|90335150|gb|EAS48903.1| polymerase III, epsilon subunit and related 3'-5' exonucleases
          [Aurantimonas manganoxydans SI85-9A1]
          Length = 260

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
          V D+ET G   ++D +IEIG++++           Q    P G   +P A ++H I+D  
Sbjct: 18 VIDVETAGHRLEDDAVIEIGSIDVDLATGVIGNPLQTLCDPAGVAINPHARRVHQISDAM 77

Query: 70 LKDKPSF 76
          L   P F
Sbjct: 78 LDGAPPF 84


>gi|333011146|gb|EGK30560.1| exonuclease family protein [Shigella flexneri K-272]
 gi|333012659|gb|EGK32039.1| exonuclease family protein [Shigella flexneri K-227]
          Length = 181

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|254191977|ref|ZP_04898477.1| oligoribonuclease [Burkholderia pseudomallei Pasteur 52237]
 gi|254203892|ref|ZP_04910252.1| oligoribonuclease [Burkholderia mallei FMH]
 gi|254360071|ref|ZP_04976341.1| oligoribonuclease [Burkholderia mallei 2002721280]
 gi|147745404|gb|EDK52484.1| oligoribonuclease [Burkholderia mallei FMH]
 gi|148029311|gb|EDK87216.1| oligoribonuclease [Burkholderia mallei 2002721280]
 gi|157987799|gb|EDO95564.1| oligoribonuclease [Burkholderia pseudomallei Pasteur 52237]
          Length = 203

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGLD   DRIIEI  V
Sbjct: 17 RNELNLVWLDMEMTGLDPDTDRIIEIAVV 45


>gi|329914413|ref|ZP_08276114.1| Oligoribonuclease [Oxalobacteraceae bacterium IMCC9480]
 gi|327545130|gb|EGF30416.1| Oligoribonuclease [Oxalobacteraceae bacterium IMCC9480]
          Length = 201

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +R N+   +  D+E TGLD + DRIIE+  V
Sbjct: 21 LRTNEFNLVWLDMEMTGLDPETDRIIEVAVV 51


>gi|307327637|ref|ZP_07606822.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
          violaceusniger Tu 4113]
 gi|306886749|gb|EFN17750.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
          violaceusniger Tu 4113]
          Length = 254

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 7  MRK-----IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
          MR        FD+ETTG+D ++DRI+    V L    + +      L P 
Sbjct: 1  MRWPSGPMAAFDLETTGIDIESDRIVTAALVFLEPDGRVSDERTWMLDPG 50


>gi|304311523|ref|YP_003811121.1| Oligoribonuclease [gamma proteobacterium HdN1]
 gi|301797256|emb|CBL45476.1| Oligoribonuclease [gamma proteobacterium HdN1]
          Length = 184

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +   K   I  D+E TGLD   DRIIEI  V
Sbjct: 1  MTDRKTNLIWIDLEMTGLDPDQDRIIEIATV 31


>gi|300741873|ref|ZP_07071894.1| putative DNA polymerase III epsilon subunit [Rothia dentocariosa
           M567]
 gi|300381058|gb|EFJ77620.1| putative DNA polymerase III epsilon subunit [Rothia dentocariosa
           M567]
          Length = 230

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 67/206 (32%), Gaps = 7/206 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D    RI+    + L       R  +    P G +    A  +HGIT E+ +
Sbjct: 11  FDLETTGVDVTTARIVTASLLLLNPDGSVQRAGEWLANP-GIEIPEGAASVHGITTEYAR 69

Query: 72  DKPSFSSIFSEFWD----FFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIID 125
                +                     IA NA +D   ++ E+ R N     L    I+D
Sbjct: 70  SHGQPAQQVIWEVAGAIGSLFLDGIPVIAFNAAYDFSVLHHEMLRYNIAHGELPAGHILD 129

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
              I +   P  R +           +   + H +  D+     + +K+     ++    
Sbjct: 130 PYVIHKHVIPRKRGNRKLETLTAEHGVVLENAHTSKADALAAERLLVKLAERFPEVATDA 189

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP 211
                   +       +     R KP
Sbjct: 190 AALHTHQVQWSLDQARDFQDWLRTKP 215


>gi|224586194|ref|YP_002639993.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|224470722|gb|ACN48552.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|322717301|gb|EFZ08872.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. A50]
 gi|323132691|gb|ADX20121.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. 4/74]
 gi|326626042|gb|EGE32387.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Dublin str. 3246]
 gi|326630269|gb|EGE36612.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 9]
          Length = 185

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 15 IDLEMTGLDPERDRIIEIA 33


>gi|290512276|ref|ZP_06551643.1| oligoribonuclease [Klebsiella sp. 1_1_55]
 gi|289775271|gb|EFD83272.1| oligoribonuclease [Klebsiella sp. 1_1_55]
          Length = 199

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 19 MSANENNLIWIDLEMTGLDPERDRIIEIA 47


>gi|238892647|ref|YP_002917381.1| oligoribonuclease [Klebsiella pneumoniae NTUH-K2044]
 gi|238544963|dbj|BAH61314.1| oligoribonuclease [Klebsiella pneumoniae subsp. pneumoniae
          NTUH-K2044]
          Length = 199

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 19 MSANENNLIWIDLEMTGLDPERDRIIEIA 47


>gi|237729098|ref|ZP_04559579.1| oligoribonuclease [Citrobacter sp. 30_2]
 gi|226908827|gb|EEH94745.1| oligoribonuclease [Citrobacter sp. 30_2]
          Length = 185

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 5  MSANENNLIWIDLEMTGLDPERDRIIEIA 33


>gi|261342826|ref|ZP_05970684.1| oligoribonuclease [Enterobacter cancerogenus ATCC 35316]
 gi|288314868|gb|EFC53806.1| oligoribonuclease [Enterobacter cancerogenus ATCC 35316]
          Length = 181

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 11 IDLEMTGLDPERDRIIEIA 29


>gi|296100932|ref|YP_003611078.1| oligoribonuclease [Enterobacter cloacae subsp. cloacae ATCC
          13047]
 gi|295055391|gb|ADF60129.1| oligoribonuclease [Enterobacter cloacae subsp. cloacae ATCC
          13047]
          Length = 181

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 11 IDLEMTGLDPERDRIIEIA 29


>gi|268679559|ref|YP_003303990.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum
          deleyianum DSM 6946]
 gi|268617590|gb|ACZ11955.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum
          deleyianum DSM 6946]
          Length = 246

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
          + I+FD ETTG +++ DRII+IGA+ +    +    F    
Sbjct: 3  KYILFDTETTG-NNEEDRIIQIGAMIVDAKGQV-EVFDELC 41


>gi|237653249|ref|YP_002889563.1| exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
 gi|237624496|gb|ACR01186.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
          Length = 213

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCP 50
          R +V + E TGLD + DR++ +GA+ +          +   L P
Sbjct: 44 RYVVLNTEATGLDLERDRLLAVGAIAVDGGLLHPQDAYHAQLEP 87


>gi|158428766|pdb|2IGI|A Chain A, Crystal Structure Of E. Coli Oligoribonuclease
 gi|158428767|pdb|2IGI|B Chain B, Crystal Structure Of E. Coli Oligoribonuclease
          Length = 180

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 10 IDLEMTGLDPERDRIIEIA 28


>gi|124516571|gb|EAY58079.1| DNA polymerase III, epsilon subunit [Leptospirillum rubarum]
          Length = 265

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 9/172 (5%)

Query: 7   MRKIVFDIETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+    D+ETTGL  DS+  RIIE+G     +     +T    +            K++G
Sbjct: 1   MKVTFLDVETTGLLRDSR-ARIIELGFSSWENGKLLRKT-STLIK-GADIVPDNISKING 57

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT E LKD P F  ++           +  +AHN  FDVG +N EL   ++ PL    I 
Sbjct: 58  ITTEMLKDAPRFEEVWKSIKGDIQG--SLLVAHNLAFDVGMVNRELILADRIPLGNMGID 115

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                 +     S   L  + K  GI   + + H A+ D   L  +   ++ 
Sbjct: 116 TLPLSRKMLPELSSYRLGEIAKHMGIL--NENPHRAMGDLETLEKIVSNLLG 165


>gi|78484942|ref|YP_390867.1| ribonuclease T [Thiomicrospira crunogena XCL-2]
 gi|78363228|gb|ABB41193.1| RNAse T [Thiomicrospira crunogena XCL-2]
          Length = 207

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL 35
          +V D+ET G D + + +IEI  V L 
Sbjct: 17 VVVDVETAGFDPQTNALIEIAIVTLK 42


>gi|261345223|ref|ZP_05972867.1| oligoribonuclease [Providencia rustigianii DSM 4541]
 gi|282566919|gb|EFB72454.1| oligoribonuclease [Providencia rustigianii DSM 4541]
          Length = 180

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          ++KN+   I  D+E TGLD   DRIIEI 
Sbjct: 1  MQKNENNLIWIDLEMTGLDPVRDRIIEIA 29


>gi|164663451|ref|XP_001732847.1| hypothetical protein MGL_0622 [Malassezia globosa CBS 7966]
 gi|159106750|gb|EDP45633.1| hypothetical protein MGL_0622 [Malassezia globosa CBS 7966]
          Length = 186

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 18/77 (23%), Gaps = 1/77 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           D E TGLD  NDR++EI  +         +      +                      
Sbjct: 23 IDCEMTGLDPNNDRLLEIACIVTDGQLRPVDEGVSYVIRTQPHVLQDMDEWCTTTHTNTG 82

Query: 71 KDKPSFSSIFSEFWDFF 87
                 +  S      
Sbjct: 83 LIDACLDAKMSHMHQDV 99


>gi|68500002|gb|AAY97945.1| hypothetical protein [Plasmid pMCBF1]
 gi|133711762|gb|ABO36582.1| hypothetical protein [uncultured bacterium pMCBF6]
          Length = 291

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 4   KNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           K  M++ +V D ETTGLD    ++IEI  V+    +  N+     + P     S +A ++
Sbjct: 114 KQAMKEGVVLDTETTGLD-GVAQVIEIAIVDWNGKTLINQR----IRPTVA-ISVDAQRV 167

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
           HGI+ + L D P+++ I  E       +      
Sbjct: 168 HGISMDDLADCPAWTDIAPEVRRVLEGRPVVIYN 201


>gi|330815929|ref|YP_004359634.1| oligoribonuclease [Burkholderia gladioli BSR3]
 gi|327368322|gb|AEA59678.1| oligoribonuclease [Burkholderia gladioli BSR3]
          Length = 202

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGL+  +DRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLNPDSDRIIEIAVV 43


>gi|191173402|ref|ZP_03034931.1| oligoribonuclease [Escherichia coli F11]
 gi|190906378|gb|EDV65988.1| oligoribonuclease [Escherichia coli F11]
          Length = 181

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|167563592|ref|ZP_02356508.1| oligoribonuclease [Burkholderia oklahomensis EO147]
 gi|167570756|ref|ZP_02363630.1| oligoribonuclease [Burkholderia oklahomensis C6786]
          Length = 201

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +N++  +  D+E TGL+  +DRIIEI  V
Sbjct: 15 RNELNLVWLDMEMTGLNPDSDRIIEIAVV 43


>gi|157374891|ref|YP_001473491.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis
          HAW-EB3]
 gi|157317265|gb|ABV36363.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis
          HAW-EB3]
          Length = 228

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK 39
            D+E TGLD  +D+I+ IG + +     
Sbjct: 45 AVDLEMTGLDPNSDQILSIGLIPIEKGLL 73


>gi|110835071|ref|YP_693930.1| oligoribonuclease [Alcanivorax borkumensis SK2]
 gi|123050323|sp|Q0VME0|ORN_ALCBS RecName: Full=Oligoribonuclease
 gi|110648182|emb|CAL17658.1| oligoribonuclease [Alcanivorax borkumensis SK2]
          Length = 181

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +   +   I  D+E TGL  +NDRIIEI 
Sbjct: 1  MTDKRNNLIWIDLEMTGLSPENDRIIEIA 29


>gi|126174849|ref|YP_001050998.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica
          OS155]
 gi|160875861|ref|YP_001555177.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica
          OS195]
 gi|125998054|gb|ABN62129.1| Exonuclease, RNase T and DNA polymerase III [Shewanella baltica
          OS155]
 gi|160861383|gb|ABX49917.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
          OS195]
 gi|315268052|gb|ADT94905.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
          OS678]
          Length = 228

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSK 39
          D+E TGL+ + D+I+ IG V +     
Sbjct: 46 DLEMTGLNPQQDQILSIGLVPIERGEI 72


>gi|325499700|gb|EGC97559.1| hypothetical protein ECD227_3797 [Escherichia fergusonii ECD227]
          Length = 185

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 5  MSANENNLIWIDLEMTGLDPERDRIIEIA 33


>gi|256022685|ref|ZP_05436550.1| ribonuclease T [Escherichia sp. 4_1_40B]
          Length = 83

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP 50
          +V D+ET G ++K D ++EI A+ L      +   + T    + P
Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEP 64


>gi|311745732|ref|ZP_07719517.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1]
 gi|126575175|gb|EAZ79525.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1]
          Length = 1428

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 69/216 (31%), Gaps = 17/216 (7%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL        +D     R++++      +           + P G      
Sbjct: 2   YLIFDTETTGLPRDYNAPMSDVDNWPRLVQLAWQLHDEKGNLISNHNYIIRPEGFTIPYN 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A K+HGI+ +    +          ++   ++    + HN +FD+  + +E  R      
Sbjct: 62  AEKVHGISTKRALKEGHDLKQILGIFEGDVKKTKYLVGHNVEFDINVVGSEYLRAEATMP 121

Query: 119 DPSRIIDTLSIARRKHPS-------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +  +DT  I+              +    +   +          H A  D    +  +
Sbjct: 122 LTADQLDTKDISTEFCAIPGGRGGKFKWPTLTELHQKLFGKGFGDAHDAAYDVDATARCF 181

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207
             ++  G Q         +  ++  K    N +  K
Sbjct: 182 FGLITQGVQAPEEGIAISEVIYEAPKLDEANFAQAK 217


>gi|50122884|ref|YP_052051.1| oligoribonuclease [Pectobacterium atrosepticum SCRI1043]
 gi|59798024|sp|Q6D037|ORN_ERWCT RecName: Full=Oligoribonuclease
 gi|49613410|emb|CAG76861.1| oligoribonuclease [Pectobacterium atrosepticum SCRI1043]
          Length = 180

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M+ +N    I  D+E TGL+  +DRIIEI 
Sbjct: 1  MVDEN--NLIWIDLEMTGLNPDHDRIIEIA 28


>gi|297269235|ref|XP_002799845.1| PREDICTED: oligoribonuclease, mitochondrial-like isoform 2 [Macaca
           mulatta]
          Length = 222

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 9/149 (6%)

Query: 1   MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSP 57
           M     M  R +  D+E TGLD + D+IIE+  +       T+    +    PN     P
Sbjct: 33  MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL------ITDSDLNILAEGPNLIIKQP 86

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           + L                   F  F           +A N+  +      +        
Sbjct: 87  DELLDSMSDWCKEHHGKQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKH 146

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCK 146
           L    I  +      +         +  K
Sbjct: 147 LHYRIIDVSTVKELCRRWYPEEYEFAPKK 175


>gi|218551434|ref|YP_002385226.1| oligoribonuclease [Escherichia fergusonii ATCC 35469]
 gi|218358976|emb|CAQ91636.1| oligoribonuclease [Escherichia fergusonii ATCC 35469]
 gi|324112239|gb|EGC06217.1| exonuclease [Escherichia fergusonii B253]
          Length = 181

 Score = 44.9 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|92113107|ref|YP_573035.1| DNA polymerase III subunit epsilon [Chromohalobacter salexigens DSM
           3043]
 gi|91796197|gb|ABE58336.1| Exonuclease [Chromohalobacter salexigens DSM 3043]
          Length = 241

 Score = 44.9 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 2/134 (1%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D+ETTGLD +   I+ IG V          +     + P  R  S  ++  H IT   ++
Sbjct: 55  DMETTGLDEQRHAIVSIGLVPFDLRRIRMAQRRYWIVRPP-RPLSERSITFHHITHTEIE 113

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P    I  E  +            + +        + +R           +   +   
Sbjct: 114 QAPDLDEILDELLEAMAGHVMVVHYRHIERTFLNAAVKARRGEGIHFPVIDTMSLEARLH 173

Query: 132 RKHPSSRNDLNSLC 145
           R+   +R       
Sbjct: 174 RQPLWARFRRWMGR 187


>gi|115931779|ref|XP_001175832.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 268

 Score = 44.9 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 56/180 (31%), Gaps = 15/180 (8%)

Query: 9   KIVFDIETTGLDSKN---DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
            +V D E T LD++      +IE   +++   + +T  TF  ++ P          +L G
Sbjct: 79  FLVLDFEATCLDNERIEPQEVIEFPVLKVSGKTFETEATFHQYVEPQVHGVGEFCTRLTG 138

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           IT + +K +P+F+     F  +  +                D         +     L  
Sbjct: 139 ITPDMVKGQPTFADTLKLFHVWMEKEGLVDPEVKFIFVTCGDWDLKTMFPSQCAHFELPY 198

Query: 121 SRIIDTLSIARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                     ++        +P     +        +   H         +++L  + +K
Sbjct: 199 HSYFRRWLNIKKAFATVTSHYPKGMMQMLERLNIPHVGRHHSGIDDCRNIANILQALALK 258


>gi|256831880|ref|YP_003160607.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans
           DSM 20603]
 gi|256685411|gb|ACV08304.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans
           DSM 20603]
          Length = 238

 Score = 44.9 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+D+ +DR++    V       T  T+   + P        A      T+  ++
Sbjct: 11  FDTETTGVDTAHDRVVTAALVLRTGEVTTVDTW--LIDPGVPIPDEAARIHGITTEYAVE 68

Query: 72  DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGF 105
              +     S   D   +        +A NA FDV  
Sbjct: 69  HGANPVDALSVIADRIVDHMSQGWALVAFNATFDVCI 105


>gi|320539682|ref|ZP_08039346.1| putative oligoribonuclease [Serratia symbiotica str. Tucson]
 gi|320030294|gb|EFW12309.1| putative oligoribonuclease [Serratia symbiotica str. Tucson]
          Length = 181

 Score = 44.9 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 11 IDLEMTGLDPERDRIIEIA 29


>gi|225175900|ref|ZP_03729892.1| Exonuclease RNase T and DNA polymerase III [Dethiobacter
          alkaliphilus AHT 1]
 gi|225168488|gb|EEG77290.1| Exonuclease RNase T and DNA polymerase III [Dethiobacter
          alkaliphilus AHT 1]
          Length = 198

 Score = 44.9 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
            D+ETTGL  + + I+E+          +  
Sbjct: 14 FVDVETTGLSPRKEEIVELAICLFAYRRDSGE 45


>gi|148546859|ref|YP_001266961.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas putida F1]
 gi|148510917|gb|ABQ77777.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas putida F1]
          Length = 183

 Score = 44.9 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E TT   G       IIEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLVIDLEATTDDGGWPVTEMEIIEIGASLVTREGREVDHFQRFVKPRRRPQLTPFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            I+   + +   F  +++ F  +      +  A  +  D        +    
Sbjct: 64  HISQADVDNAAPFREVWASFERWLGHHRGQLQAWVSWGDYDRQQLHQEWQQH 115


>gi|257879256|ref|ZP_05658909.1| exonuclease [Enterococcus faecium 1,230,933]
 gi|257881926|ref|ZP_05661579.1| exonuclease [Enterococcus faecium 1,231,502]
 gi|257886420|ref|ZP_05666073.1| exonuclease [Enterococcus faecium 1,231,501]
 gi|257892035|ref|ZP_05671688.1| exonuclease [Enterococcus faecium 1,231,410]
 gi|257894890|ref|ZP_05674543.1| exonuclease [Enterococcus faecium 1,231,408]
 gi|258617178|ref|ZP_05714948.1| exonuclease [Enterococcus faecium DO]
 gi|260558702|ref|ZP_05830891.1| exonuclease [Enterococcus faecium C68]
 gi|261208809|ref|ZP_05923246.1| exonuclease [Enterococcus faecium TC 6]
 gi|289567393|ref|ZP_06447761.1| exonuclease [Enterococcus faecium D344SRF]
 gi|293554053|ref|ZP_06674651.1| exonuclease [Enterococcus faecium E1039]
 gi|293559453|ref|ZP_06675990.1| exonuclease [Enterococcus faecium E1162]
 gi|293567360|ref|ZP_06678710.1| exonuclease [Enterococcus faecium E1071]
 gi|293571424|ref|ZP_06682452.1| exonuclease [Enterococcus faecium E980]
 gi|294616820|ref|ZP_06696561.1| exonuclease [Enterococcus faecium E1636]
 gi|294620071|ref|ZP_06699426.1| exonuclease [Enterococcus faecium E1679]
 gi|294622945|ref|ZP_06701839.1| exonuclease [Enterococcus faecium U0317]
 gi|257813484|gb|EEV42242.1| exonuclease [Enterococcus faecium 1,230,933]
 gi|257817584|gb|EEV44912.1| exonuclease [Enterococcus faecium 1,231,502]
 gi|257822276|gb|EEV49406.1| exonuclease [Enterococcus faecium 1,231,501]
 gi|257828395|gb|EEV55021.1| exonuclease [Enterococcus faecium 1,231,410]
 gi|257831269|gb|EEV57876.1| exonuclease [Enterococcus faecium 1,231,408]
 gi|260075161|gb|EEW63474.1| exonuclease [Enterococcus faecium C68]
 gi|260077311|gb|EEW65031.1| exonuclease [Enterococcus faecium TC 6]
 gi|289160818|gb|EFD08750.1| exonuclease [Enterococcus faecium D344SRF]
 gi|291589962|gb|EFF21760.1| exonuclease [Enterococcus faecium E1071]
 gi|291590326|gb|EFF22094.1| exonuclease [Enterococcus faecium E1636]
 gi|291593687|gb|EFF25206.1| exonuclease [Enterococcus faecium E1679]
 gi|291597644|gb|EFF28801.1| exonuclease [Enterococcus faecium U0317]
 gi|291601744|gb|EFF31998.1| exonuclease [Enterococcus faecium E1039]
 gi|291606515|gb|EFF35912.1| exonuclease [Enterococcus faecium E1162]
 gi|291608496|gb|EFF37790.1| exonuclease [Enterococcus faecium E980]
          Length = 177

 Score = 44.9 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + +      +  V + +    +  F   + P         +++HGI 
Sbjct: 1   MNFVAMDFET--ANHQPYSACSLALVMVKNSQIVDE-FYTLIQPETPFF-WRNVQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +++ P F  ++     +F +     +AHNA FD   +   L   + +  +   +   
Sbjct: 57  QEDVRNAPKFPEVWQTIQPYFQKNRLV-VAHNAAFDTKVLAGCLDYYHLEQPNYLSLCTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            S  R       + LN++C+   I + H   H AL DS   +++ +
Sbjct: 116 KSSRRLFPEFPNHRLNTVCENLNIQLDH--HHDALEDSRACAEILL 159


>gi|114640399|ref|XP_001150488.1| PREDICTED: similar to CGI-114 protein isoform 1 [Pan troglodytes]
          Length = 222

 Score = 44.9 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 9/149 (6%)

Query: 1   MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSP 57
           M     M  R +  D+E TGLD + D+IIE+  +       T+    +    PN     P
Sbjct: 33  MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL------ITDSDLNILAEGPNLIIKQP 86

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           + L                   F  F           +A N+  +      +        
Sbjct: 87  DELLDSMSDWCKEHHGKQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKH 146

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCK 146
           L    I  +      +         +  K
Sbjct: 147 LHYRIIDVSTVKELCRRWYPEEYEFAPKK 175


>gi|57530089|ref|NP_001006450.1| 3'-5' exoribonuclease 1 [Gallus gallus]
 gi|53130526|emb|CAG31592.1| hypothetical protein RCJMB04_8i1 [Gallus gallus]
          Length = 327

 Score = 44.9 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           V D E T   G   +    IIE   V L  ++ +   TFQ ++ P      S   + L G
Sbjct: 110 VVDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVKPEINPKLSEFCVGLTG 169

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +     D+  +               + +    +       +  + 
Sbjct: 170 ITQDIVDKADTFPQVLQNVVDWMRQRELGTKYSYCMLTDGSWDMSKFLNIQCRVSRIKHP 229

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P ++  L  + ++ G++   R  H  L DS  ++ + I+M+
Sbjct: 230 SFAKKWINIRKSYGNFYKVPRNQTKLMIMLEKLGMSYDGRP-HSGLDDSKNIARIAIRML 288

Query: 176 VGGSQINFG 184
             G Q+   
Sbjct: 289 QDGCQLRVN 297


>gi|21224413|ref|NP_630192.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor
          A3(2)]
 gi|13276811|emb|CAC33929.1| putative DNA polymerase [Streptomyces coelicolor A3(2)]
          Length = 244

 Score = 44.9 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
          FD+ETTG D +  RI+    +E+       R  +    P 
Sbjct: 11 FDLETTGTDPREARIVTGAVIEVRGSEPLGRR-EWLADPG 49


>gi|322382088|ref|ZP_08056018.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153960|gb|EFX46310.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 142

 Score = 44.9 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++ D ETTG++  +  I++I  ++L         F   + P       EA  +HGIT+
Sbjct: 56  KYLILDTETTGIEYDS-EIVDIAIIDLDKNLI----FASLVKP-ICPIPEEATMIHGITN 109

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
           E + D PS+  ++++     + +      
Sbjct: 110 EMVADAPSWLEVWAQVQKLLSGKTLLIYN 138


>gi|227113804|ref|ZP_03827460.1| oligoribonuclease [Pectobacterium carotovorum subsp. brasiliensis
          PBR1692]
 gi|227326226|ref|ZP_03830250.1| oligoribonuclease [Pectobacterium carotovorum subsp. carotovorum
          WPP14]
          Length = 180

 Score = 44.9 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M+ +N    I  D+E TGL+  +DRIIEI 
Sbjct: 1  MVDEN--NLIWIDLEMTGLNPDHDRIIEIA 28


>gi|322411431|gb|EFY02339.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 820

 Score = 44.9 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 9/104 (8%)

Query: 4   KNKM--RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            N+M  +  V D+E T  ++     II++G V +++  +   T+Q  + P+    S    
Sbjct: 2   SNEMTRKYAVVDLEAT--NAGATAAIIQVGIV-IIEGKEVVETYQTDINPH-EPLSDHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
            L GITD  L   P FS +    ++  ++    ++AHN KFD  
Sbjct: 58  DLTGITDAQLAQAPEFSQVAKTIYELISD--CVFVAHNVKFDAN 99


>gi|227832962|ref|YP_002834669.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
          ATCC 700975]
 gi|227453978|gb|ACP32731.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
          ATCC 700975]
          Length = 205

 Score = 44.9 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
            D+ETT LD +  +I+ IG V +      
Sbjct: 27 AVDMETTSLDPRRGKIVSIGWVPVNGGVID 56


>gi|222824026|ref|YP_002575600.1| DNA polymerase III, epsilon subunit [Campylobacter lari RM2100]
 gi|222539248|gb|ACM64349.1| DNA polymerase III, epsilon subunit [Campylobacter lari RM2100]
          Length = 254

 Score = 44.9 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 6/114 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIE+TG   K+ +I+EIGAV++ +Y + +R F+ F+            +L GI+ + +
Sbjct: 74  VVDIESTGG-IKSGQILEIGAVKIQNYKEIDR-FESFVK--VESIPENITELTGISLDMV 129

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ++ PS  ++ + F      +++ ++AHN +FD  FI+  +   +   L   R+ 
Sbjct: 130 ENAPSLKTVLNNF--KLFLKDSIFVAHNVRFDYHFISKAMYENDFGVLLNRRLC 181


>gi|285018765|ref|YP_003376476.1| ribonuclease t (exoribonuclease t) (rnase t) protein [Xanthomonas
           albilineans GPE PC73]
 gi|283473983|emb|CBA16484.1| probable ribonuclease t (exoribonuclease t) (rnase t) protein
           [Xanthomonas albilineans]
          Length = 217

 Score = 44.9 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 61/183 (33%), Gaps = 13/183 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D     ++EI  + +            T    + P  G    P++L++ G
Sbjct: 27  VVVDVETGGFDWNRHALLEIAVIPIEMDAAGKLSPGDTASAHVVPAPGTVIDPKSLEITG 86

Query: 65  ITDEFLKD--------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                 +        +  Q A  + HNA FD+ F+NA + R    
Sbjct: 87  IVLDHPFRLAKPEREALEHVFTPVRAAVKKYGCQRAILVGHNAHFDLNFLNATVARCGHK 146

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      ++        +  L    +  G   S    H A+ D+   + ++ K+  
Sbjct: 147 RNPFHPFSVFDTVTLAGIAYGQTVLARAVQAAGFEWSAADAHSAVYDTEQTARLFCKIAN 206

Query: 177 GGS 179
              
Sbjct: 207 AWP 209


>gi|86153724|ref|ZP_01071927.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121612917|ref|YP_001000159.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005117|ref|ZP_02270875.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85842685|gb|EAQ59897.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87250067|gb|EAQ73025.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 253

 Score = 44.9 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 6/122 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIE+TG       I+EIGAV++ +  +  R FQ F+    ++      +L GIT E +
Sbjct: 74  IVDIESTGG-VSKGEILEIGAVKIQNSKEIAR-FQSFVK--VKEIPENITELTGITYEMV 129

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ PS + + S+F      +++ ++AHN +FD  FI+  L       L   RI       
Sbjct: 130 ENAPSLAKVLSDF--RLFLKDSIFVAHNVRFDYSFISRALNECGFGILLNRRICTIEFAQ 187

Query: 131 RR 132
             
Sbjct: 188 CC 189


>gi|121604376|ref|YP_981705.1| oligoribonuclease [Polaromonas naphthalenivorans CJ2]
 gi|120593345|gb|ABM36784.1| Exonuclease, RNase T and DNA polymerase III [Polaromonas
          naphthalenivorans CJ2]
          Length = 187

 Score = 44.9 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +++K+    +  D E TGLD + +RIIEI  V
Sbjct: 7  LLKKSDQNLVWLDCEMTGLDPEKERIIEIAVV 38


>gi|256027838|ref|ZP_05441672.1| exonuclease, RNase T and DNA polymerase III [Fusobacterium sp.
          D11]
 gi|289765790|ref|ZP_06525168.1| exonuclease [Fusobacterium sp. D11]
 gi|289717345|gb|EFD81357.1| exonuclease [Fusobacterium sp. D11]
          Length = 191

 Score = 44.9 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 7  MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50
          M KI+F D ET G++ +   +I++  +  +D     + F  ++ P
Sbjct: 1  MNKIIFIDTETGGVNPEKSALIQLSGIIRIDKKDVEK-FNFYIKP 44


>gi|77460172|ref|YP_349679.1| exonuclease [Pseudomonas fluorescens Pf0-1]
 gi|77384175|gb|ABA75688.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 180

 Score = 44.9 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 5/110 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E TT   G       IIEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLVIDLEATTDEGGWPVTEMEIIEIGATLVDRAGREQDHFQRFVKPTRRPLLTPFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
            IT   +      S ++  F  +  +         +  D        +  
Sbjct: 64  HITQANIDAAQPLSEVWPAFERWLGQHQTRLEGWASWGDYDRKQLLQEWQ 113


>gi|254427614|ref|ZP_05041321.1| exonuclease superfamily [Alcanivorax sp. DG881]
 gi|196193783|gb|EDX88742.1| exonuclease superfamily [Alcanivorax sp. DG881]
          Length = 181

 Score = 44.9 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +   +   I  D+E TGL  +NDRIIEI 
Sbjct: 1  MTDKRNNLIWIDLEMTGLSPENDRIIEIA 29


>gi|88601936|ref|YP_502114.1| exonuclease [Methanospirillum hungatei JF-1]
 gi|88187398|gb|ABD40395.1| Exonuclease [Methanospirillum hungatei JF-1]
          Length = 215

 Score = 44.9 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 72/217 (33%), Gaps = 22/217 (10%)

Query: 7   MRKIVFDIETTGLD-SKND---------RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKN 55
           M+ ++FD E+TGL   + D         R++++  +        T   +   + P+G   
Sbjct: 1   MKYLIFDTESTGLPREEKDPFHYPEYWPRMVQLAWILTDGETIITEENY--LIYPDGFVI 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
              ++++HGIT+E  +++          +    +Q    + HN  FD   + +E  R   
Sbjct: 59  PSSSMEIHGITNERAREEGKPVLEVLSVFSESIKQADVLVGHNVSFDRSIVTSEYSRAKL 118

Query: 114 -------NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
                         +        A+      +    S   ++         H A  D   
Sbjct: 119 NAPILKLPYHCTMKTSTEVCKLPAKGGRRGYKWPSLSELHQFLFEEPFEHAHDASADVRA 178

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNI 203
               Y+++   G       K +      ++++  P  
Sbjct: 179 CMRCYLELKNRGLFQELWTKPDPKEMKWKKRRNNPYY 215


>gi|255324350|ref|ZP_05365469.1| DNA polymerase III subunit epsilon [Corynebacterium
           tuberculostearicum SK141]
 gi|255298569|gb|EET77867.1| DNA polymerase III subunit epsilon [Corynebacterium
           tuberculostearicum SK141]
          Length = 432

 Score = 44.9 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +   ++TTG+     RI+ I A+   D  +  + F   L P           LHG++  
Sbjct: 55  YVALTLQTTGIHPSTGRIVTIDAIAFNDAGEQGQLFHAVLKP---DIDAGPRHLHGLSTT 111

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
            ++  P+F  I        + +          +  
Sbjct: 112 DIEQAPAFGKILKSLDKLIDGRTLIVHDLPYTWGF 146


>gi|77460741|ref|YP_350248.1| ribonuclease T [Pseudomonas fluorescens Pf0-1]
 gi|123603449|sp|Q3K7J7|RNT_PSEPF RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|77384744|gb|ABA76257.1| ribonuclease T [Pseudomonas fluorescens Pf0-1]
          Length = 224

 Score = 44.9 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI A  + + +      + T+   + P  G    P AL+  G
Sbjct: 32  VVVDVETGGFNSATDALLEIAATTIAMDEKGFVYPDHTYFFRVEPFEGANVEPAALEFTG 91

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +       + A  + HN+ FD+GF+NA + R++  
Sbjct: 92  IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 151

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    R  H A  D+   ++++  ++ 
Sbjct: 152 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAADIDFDGREAHSARYDTEKTAELFCGIVN 211

Query: 177 GGSQIN 182
              Q+ 
Sbjct: 212 RWKQMG 217


>gi|114320658|ref|YP_742341.1| oligoribonuclease [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311672|sp|Q0A8I6|ORN_ALHEH RecName: Full=Oligoribonuclease
 gi|114227052|gb|ABI56851.1| Exonuclease, RNase T and DNA polymerase III [Alkalilimnicola
          ehrlichii MLHE-1]
          Length = 193

 Score = 44.9 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD   DRIIEI 
Sbjct: 11 LDLEMTGLDPDTDRIIEIA 29


>gi|189500655|ref|YP_001960125.1| Exonuclease RNase T and DNA polymerase III [Chlorobium
           phaeobacteroides BS1]
 gi|189496096|gb|ACE04644.1| Exonuclease RNase T and DNA polymerase III [Chlorobium
           phaeobacteroides BS1]
          Length = 185

 Score = 44.9 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 58/182 (31%), Gaps = 22/182 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFL 70
            D+ETTG +     II+IGA+ +           +   P+ G      AL + G + E L
Sbjct: 8   IDVETTGTNPAKHGIIQIGAI-MEVSGIIAEELNLKCAPHSGADIDDHALTITGTSREEL 66

Query: 71  KDKPSFSSIFSEFWDFFNEQ--------NAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             + S      +F  F N                +N  FD+ FI    +         S 
Sbjct: 67  THRMSSKEALLQFKQFLNRYVEQYDREDKCYPAGYNVHFDLDFIQQWFKMHGDKYGIGSY 126

Query: 123 ---------IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                     +  +             L ++C+ YG        H A  D     ++  K
Sbjct: 127 VNWRRLDPLPVLFMKDFTGALHLPDYKLETVCRHYG---IRLEAHDAFSDIRATRELLTK 183

Query: 174 MM 175
           ++
Sbjct: 184 LL 185


>gi|227550322|ref|ZP_03980371.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330]
 gi|227180544|gb|EEI61516.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330]
          Length = 201

 Score = 44.9 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + +      +  V + +    +  F   + P         +++HGI 
Sbjct: 25  MNFVAMDFET--ANHQPYSACSLALVMVKNSQIVDE-FYTLIQPETPFF-WRNVQIHGIH 80

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +++ P F  ++     +F +     +AHNA FD   +   L   + +  +   +   
Sbjct: 81  QEDVRNAPKFPEVWQTIQPYFQKNLLV-VAHNAAFDTKVLAGCLDYYHLEQPNYLSLCTV 139

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            S  R       + LN++C+   I + H   H AL DS   +++ +
Sbjct: 140 KSSRRLFPEFPNHRLNTVCENLNIQLDH--HHDALEDSRACAEILL 183


>gi|288928364|ref|ZP_06422211.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331198|gb|EFC69782.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108]
          Length = 165

 Score = 44.9 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 6/119 (5%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+     D ET   + K + +  +G V + +      ++   + P         + +HG+
Sbjct: 1   MKDFAAIDFET--ANFKRESVCSVGLVLVEEGKIV-DSYYHLIQPTPNYFEERCVTVHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           T      +P+F  +++E       +N   +AHN  FD   + A     + +  D     
Sbjct: 58  TTADTNGQPTFPDVWAEIAPLI--RNKPLVAHNKAFDESCLKAAFAAYDMEYPDYPFYC 114


>gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
 gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
          Length = 948

 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 66/234 (28%), Gaps = 31/234 (13%)

Query: 4   KNKMRK--IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           KN M +  + FD ETTGL+     ++ I         +T + F V          P    
Sbjct: 369 KNLMNQTSVCFDTETTGLNPLTAELVGIAF-----SWETGKGFYV----------PFPED 413

Query: 62  LHGITDEFLKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +   +     +P F +   E               +N +      +  L     +P   
Sbjct: 414 KNEAQELIEVLRPFFENDNIEKIGQNLKYDIKVLAKYNVEVKGKLFDTMLAHYLINPDMR 473

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +           P S  +L     +  +++           +   +D+ +++     +
Sbjct: 474 HNMDVLAETYLNYTPISITELIGKKGKNQLSMREVPLDKQTEYAVEDADITLQLKEHFEK 533

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE-LDEHDKTIQTLGK 233
                          E  T    + ++          + E ++     + +L +
Sbjct: 534 ------------ELGEANTQKLFNDIELPLLRVLAAMELEGINLDKDFLNSLSE 575


>gi|331677519|ref|ZP_08378194.1| ribonuclease T (Exoribonuclease T) (RNase T) [Escherichia coli
          H591]
 gi|331073979|gb|EGI45299.1| ribonuclease T (Exoribonuclease T) (RNase T) [Escherichia coli
          H591]
          Length = 57

 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL 35
          +V D+ET G ++K D ++EI A+ L 
Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLK 45


>gi|37528414|ref|NP_931759.1| oligoribonuclease [Photorhabdus luminescens subsp. laumondii
          TTO1]
 gi|41017433|sp|Q7MYS8|ORN_PHOLL RecName: Full=Oligoribonuclease
 gi|36787852|emb|CAE16967.1| oligoribonuclease [Photorhabdus luminescens subsp. laumondii
          TTO1]
          Length = 181

 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + K++   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSKSEHNLIWIDLEMTGLDPERDRIIEIA 29


>gi|237752604|ref|ZP_04583084.1| DNA polymerase III subunit epsilon [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376093|gb|EEO26184.1| DNA polymerase III subunit epsilon [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 267

 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 5/114 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIET G +      IEIG +++ +       F+ F+     +      K+ GI  + L
Sbjct: 73  IVDIETNGHNPCVHTPIEIGTLKVRNGKVV-DCFESFV--FNAEIPEYITKITGINAQML 129

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ++ P  +S+  +F       ++ ++AHN  FD  F++  L++     L   R+ 
Sbjct: 130 ENAPKLASVLEKF--KLFLGDSIFVAHNVDFDYNFLSQSLEKCGFGYLYNPRLC 181


>gi|255011868|ref|ZP_05283994.1| putative exonuclease [Bacteroides fragilis 3_1_12]
 gi|313149703|ref|ZP_07811896.1| DNA polymerase III [Bacteroides fragilis 3_1_12]
 gi|313138470|gb|EFR55830.1| DNA polymerase III [Bacteroides fragilis 3_1_12]
          Length = 175

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 8/175 (4%)

Query: 9   KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
               D ET TG       +   G V + D   T+  +   + P   +     + +HGIT 
Sbjct: 5   FAAIDFETATGYMESACAV---GIVTVTDGEITDE-YYSLIQPPENEYWRANILVHGITP 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E  +  P F +I+ E       +           +V      + R++ D L      +  
Sbjct: 61  EMTESLPGFHAIYPEIKKRLQGKVVVAHNEQFDRNVLKRTMRMYRLDYDELLLPEHWECT 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
               R       +L++ C+R G        H AL D+   + +Y+  +      N
Sbjct: 121 CRIYRSLGYKPVNLSACCEREG---IELKHHEALSDARGCAKLYLNYLERYRPFN 172


>gi|239629146|ref|ZP_04672177.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519292|gb|EEQ59158.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 315

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 52/180 (28%), Gaps = 12/180 (6%)

Query: 7   MRKIVFDIE-TTGLDSKND-------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  IV D+E     + K D        IIEIGAV L    +    F   + P   K    
Sbjct: 1   MNYIVLDLEWNQSPNGKEDSVEHLPFEIIEIGAVMLDHQFRAAGEFHKLIKPQVYKKMHF 60

Query: 59  ALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRIN 114
            +      D     ++   F ++  EF D+  E +  +    +    ++       +   
Sbjct: 61  KISEVTHMDMKKLCQEGQPFKAVMQEFLDWCGEGDFRFCTWGSMDLTELQRNMIYHKMEI 120

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P              +              +       R  H AL D++    +   +
Sbjct: 121 PFPRPLLYYDIQKLYCLQYGDGKNKVSLDQAVQLQGMAEDRPFHRALDDAYYTGKILSVL 180


>gi|332669588|ref|YP_004452596.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi
          ATCC 484]
 gi|332338626|gb|AEE45209.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi
          ATCC 484]
          Length = 239

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
          FD ETTGLD   DRI+    V         RT+   L P 
Sbjct: 11 FDTETTGLDVDRDRIVTAALVRRDAAGTHVRTW--LLDPG 48


>gi|325265748|ref|ZP_08132436.1| epsilon subunit family exonuclease [Kingella denitrificans ATCC
          33394]
 gi|324982788|gb|EGC18412.1| epsilon subunit family exonuclease [Kingella denitrificans ATCC
          33394]
          Length = 43

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 10 IVFDIETTGLDSKNDRIIEIG 30
          ++ D+ETTG + + DRI EI 
Sbjct: 20 VILDLETTGGNFQRDRITEIA 40


>gi|291454901|ref|ZP_06594291.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
 gi|291357850|gb|EFE84752.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 247

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTF 44
          FD+ETTG D +  RI+    +E+ D  +   RT+
Sbjct: 21 FDLETTGTDPREARIVTAAVIEVADGERRGHRTW 54


>gi|261823163|ref|YP_003261269.1| oligoribonuclease [Pectobacterium wasabiae WPP163]
 gi|261607176|gb|ACX89662.1| Exonuclease RNase T and DNA polymerase III [Pectobacterium
          wasabiae WPP163]
          Length = 180

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M+ +N    I  D+E TGL+  +DRIIEI 
Sbjct: 1  MVDEN--NLIWIDLEMTGLNPDHDRIIEIA 28


>gi|239983070|ref|ZP_04705594.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 237

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTF 44
          FD+ETTG D +  RI+    +E+ D  +   RT+
Sbjct: 11 FDLETTGTDPREARIVTAAVIEVADGERRGHRTW 44


>gi|197287169|ref|YP_002153041.1| oligoribonuclease [Proteus mirabilis HI4320]
 gi|194684656|emb|CAR46589.1| oligoribonuclease [Proteus mirabilis HI4320]
          Length = 181

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 11 IDLEMTGLDPERDRIIEIA 29


>gi|146300607|ref|YP_001195198.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium
          johnsoniae UW101]
 gi|146155025|gb|ABQ05879.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium
          johnsoniae UW101]
          Length = 198

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQ 45
          + +V   ET+GL+   D I+ +GA  ++D        F+
Sbjct: 29 KFVVLSTETSGLNPNKDVILSLGAFSVIDDSIIIKENFE 67


>gi|257895239|ref|ZP_05674892.1| exonuclease [Enterococcus faecium Com12]
 gi|257897861|ref|ZP_05677514.1| exonuclease [Enterococcus faecium Com15]
 gi|293377229|ref|ZP_06623434.1| exonuclease [Enterococcus faecium PC4.1]
 gi|257831804|gb|EEV58225.1| exonuclease [Enterococcus faecium Com12]
 gi|257835773|gb|EEV60847.1| exonuclease [Enterococcus faecium Com15]
 gi|292644090|gb|EFF62195.1| exonuclease [Enterococcus faecium PC4.1]
          Length = 177

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + +      +  V + +    +  F   + P         +++HGI 
Sbjct: 1   MNFVAMDFET--ANHQPYSACSLALVMVKNSQIVDE-FYTLIQPETPFF-WRNVQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +++ P F  ++     +F +     +AHNA FD   +   L   + +  +   +   
Sbjct: 57  QEDVRNAPKFPEVWQTIQPYFQKNLLV-VAHNAAFDTKVLAGCLDYYHLEQPNYLSLCTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            S  R       + LN++C+   I + H   H AL DS   +++ +
Sbjct: 116 KSSRRLFPEFPNHRLNTVCENLNIQLDH--HHDALEDSRACAEILL 159


>gi|115379647|ref|ZP_01466730.1| DNA polymerase III epsilon subunit [Stigmatella aurantiaca
          DW4/3-1]
 gi|310819920|ref|YP_003952278.1| exonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|115363357|gb|EAU62509.1| DNA polymerase III epsilon subunit [Stigmatella aurantiaca
          DW4/3-1]
 gi|309392992|gb|ADO70451.1| Exonuclease [Stigmatella aurantiaca DW4/3-1]
          Length = 219

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNG-RKNSPEALKLHGITDE 68
            D+ETTGLD+    ++E+  + +   S      ++  + P       PEAL + G +DE
Sbjct: 33 FVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEARVQPTRLADAHPEALAVCGYSDE 92

Query: 69 FL 70
            
Sbjct: 93 EW 94


>gi|257886664|ref|ZP_05666317.1| exonuclease [Enterococcus faecium 1,141,733]
 gi|257822718|gb|EEV49650.1| exonuclease [Enterococcus faecium 1,141,733]
          Length = 177

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + +      +  V + +    +  F   + P         +++HGI 
Sbjct: 1   MNFIAMDFET--ANHQPYSACSLALVMVKNSQIVDE-FYTLIQPETPFF-WRNVQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +++ P F  ++     +F +     +AHNA FD   +   L   + +  +   +   
Sbjct: 57  QEDVRNAPKFPEVWQTIQPYFQKNRLV-VAHNAAFDTKVLAGCLDYYHLEQPNYLSLCTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            S  R       + LN++C+   I + H   H AL DS   +++ +
Sbjct: 116 KSSRRLFPEFPNHRLNTVCENLNIQLDH--HHDALEDSRACAEILL 159


>gi|254510966|ref|ZP_05123033.1| exonuclease [Rhodobacteraceae bacterium KLH11]
 gi|221534677|gb|EEE37665.1| exonuclease [Rhodobacteraceae bacterium KLH11]
          Length = 334

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 68/205 (33%), Gaps = 8/205 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D+ET   +S    I +IG   + D   T  TF   + P      P  + +HGI  
Sbjct: 45  RFVALDVET--ANSDASSICQIGF-AVSDGQGTILTFGTLIHPET-SFDPFNIGIHGIDA 100

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +   P F  +   F  F        +  ++ FD   +NA   R +   L  +     +
Sbjct: 101 DAVSTAPVFPEVLQTFRAFLERH---PLVQHSSFDKRAVNAACDRYDIPKLRSNWHDSVV 157

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
              R       N  + L     +       H A+ D+   + V + +    +   F   T
Sbjct: 158 MARRAWPELKGNGGHGLANLKEVLGLEFDHHDAIEDAKAAAHVVL-LAEEATGKGFEDLT 216

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPL 212
           ++        +   ++   +     
Sbjct: 217 SKQSSGPIASERSRSVEGNQNGPLY 241


>gi|152996651|ref|YP_001341486.1| oligoribonuclease [Marinomonas sp. MWYL1]
 gi|150837575|gb|ABR71551.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp.
          MWYL1]
          Length = 185

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
           D+E TGLD + D IIEI  V       T++   V    P+   +  +A+          
Sbjct: 11 IDLEMTGLDPETDTIIEIATV------VTDKHLNVLAKGPSLAIHQEKAVMDAMDEWCTQ 64

Query: 71 KD 72
            
Sbjct: 65 HH 66


>gi|148652365|ref|YP_001279458.1| DNA polymerase III subunit epsilon [Psychrobacter sp. PRwf-1]
 gi|148571449|gb|ABQ93508.1| Exonuclease, RNase T and DNA polymerase III [Psychrobacter sp.
           PRwf-1]
          Length = 201

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 54/173 (31%), Gaps = 12/173 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D E +GL++K + ++ I A+ +      T +   +   P         +       
Sbjct: 33  WVAIDCEMSGLNAKKNHLLSIAAIHINGSVIDTGQGLHLICRPPVMPTKDTIIIHGLRPI 92

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR----- 122
           +          +           N   +    + D+ F+N  ++      L         
Sbjct: 93  DVENGLSYEQMLAKLLP---FIGNRPIVGFCPQLDISFLNPLVKAYMGTYLPNPVIDIRT 149

Query: 123 -IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                     +  P   + L+++C++  +       H A  D+ + +  ++ +
Sbjct: 150 LYNRYSGNRTQGIPHQSSHLSAICQQLKLPDMAA--HDAYNDAIMTAMAFLLL 200


>gi|90416474|ref|ZP_01224405.1| oligoribonuclease [marine gamma proteobacterium HTCC2207]
 gi|90331673|gb|EAS46901.1| oligoribonuclease [marine gamma proteobacterium HTCC2207]
          Length = 188

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL  + DRIIEI  V
Sbjct: 18 IDLEMTGLSPERDRIIEIATV 38


>gi|238755817|ref|ZP_04617148.1| Exodeoxyribonuclease 10 [Yersinia ruckeri ATCC 29473]
 gi|238705975|gb|EEP98361.1| Exodeoxyribonuclease 10 [Yersinia ruckeri ATCC 29473]
          Length = 249

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 17/172 (9%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           KM   V D ET GLD     I+EI +++ +D   T       + P+ R  S EA+ +H I
Sbjct: 29  KMNFRVIDTETCGLD---GGIVEIASLDFIDGEIT-NPMSDLVSPD-RPISIEAMAIHHI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+E ++ KP  +    ++       +  ++AHNA FD G +                +  
Sbjct: 84  TEEMVEGKPRIAVAVGKYQ-----GSPYYVAHNAPFDRGVLPEMGGEWICTYKLARALYP 138

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +  + +    +     +              H AL D ++ + ++ ++M  
Sbjct: 139 DIKYSNQYLRYALRLDVTPPADLYP-------HRALYDCYITAALFQRIMRD 183


>gi|126011010|ref|YP_001039760.1| gram-positive type DNA polymerase III alpha subunit [Burkholderia
          ambifaria phage BcepF1]
 gi|119712586|gb|ABL96807.1| gram-positive type DNA polymerase III alpha subunit [Burkholderia
          ambifaria phage BcepF1]
          Length = 197

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 8/52 (15%)

Query: 7  MRKIVFDIETTGLDS-------KNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
          M   VFD ETTGL S       +  RIIE   + + D      T +    P 
Sbjct: 1  MIFTVFDTETTGLPSHPLAPLDRQPRIIEFAGI-VTDGRDILHTLEFRCNPG 51


>gi|300704711|ref|YP_003746314.1| oligoribonuclease [Ralstonia solanacearum CFBP2957]
 gi|299072375|emb|CBJ43713.1| oligoribonuclease [Ralstonia solanacearum CFBP2957]
          Length = 219

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL  +NDRIIE+  V
Sbjct: 33 LDMEMTGLSPENDRIIEVAMV 53


>gi|326318064|ref|YP_004235736.1| exonuclease RNase T and DNA polymerase III [Acidovorax avenae
          subsp. avenae ATCC 19860]
 gi|323374900|gb|ADX47169.1| Exonuclease RNase T and DNA polymerase III [Acidovorax avenae
          subsp. avenae ATCC 19860]
          Length = 193

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          ++ K+ +  +  D E TGLD + DR++EI  V
Sbjct: 12 VLPKSDLNFVWLDCEMTGLDPEKDRLLEIAVV 43


>gi|253991561|ref|YP_003042917.1| oligoribonuclease [Photorhabdus asymbiotica subsp. asymbiotica
          ATCC 43949]
 gi|211638439|emb|CAR67061.1| oligoribonuclease (ec 3.1.-.-) [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253783011|emb|CAQ86176.1| oligoribonuclease [Photorhabdus asymbiotica]
          Length = 181

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + K++   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSKSEHNLIWIDLEMTGLDPERDRIIEIA 29


>gi|120610573|ref|YP_970251.1| oligoribonuclease [Acidovorax citrulli AAC00-1]
 gi|166215745|sp|A1TND9|ORN_ACIAC RecName: Full=Oligoribonuclease
 gi|120589037|gb|ABM32477.1| Exonuclease, RNase T and DNA polymerase III [Acidovorax citrulli
          AAC00-1]
          Length = 193

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          ++ K+ +  +  D E TGLD + DR++EI  V
Sbjct: 12 VLPKSDLNFVWLDCEMTGLDPEKDRLLEIAVV 43


>gi|319955911|ref|YP_004167174.1| DNA polymerase iii, epsilon subunit [Nitratifractor salsuginis DSM
           16511]
 gi|319418315|gb|ADV45425.1| DNA polymerase III, epsilon subunit [Nitratifractor salsuginis DSM
           16511]
          Length = 272

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 7/173 (4%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M    +M+   + DIET G      ++IEIGAV L +    +R  + F+           
Sbjct: 64  MFTPWQMQEYCIIDIETNGSKPGRSQVIEIGAVMLKEGKIIDR-LETFV--ACAYLPEHI 120

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +KL GI    L + PS     ++  +F  +  A + AHNA FD GF+NA  QR    P+ 
Sbjct: 121 IKLTGIEPTDLAEAPSRKEALTQLRNFMGD--AVFTAHNAGFDHGFLNASFQRFGLGPIG 178

Query: 120 PSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                   L+    +         +     G+   HR+ + AL  S +L   +
Sbjct: 179 NPVLCTIDLARRTFESERYGLAYLNESLDLGMQAHHRAYNDALAASKVLMKSF 231


>gi|306841731|ref|ZP_07474417.1| DNA polymerase III, epsilon chain [Brucella sp. BO2]
 gi|306288136|gb|EFM59523.1| DNA polymerase III, epsilon chain [Brucella sp. BO2]
          Length = 193

 Score = 44.5 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 4/158 (2%)

Query: 24  DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
           DRII +GAV++       ++  +   P  + +SP+A  +HG  +   + +  F  + +  
Sbjct: 4   DRIITLGAVKIEGDELLTQSLYLIFDP-RKDSSPQAEAIHGFDNWMTRYQDLFHELAAPI 62

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNS 143
             +      E +AHNA+FD+ +I  E ++   D LD           R            
Sbjct: 63  RKW-FSWADEVVAHNAQFDIHYIQREFRKAEVDMLDQPVYCTMEGARRLW--RGDPAKLD 119

Query: 144 LCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            C           +HGAL D++L + +Y+        +
Sbjct: 120 HCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 157


>gi|329889237|ref|ZP_08267580.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568]
 gi|328844538|gb|EGF94102.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568]
          Length = 211

 Score = 44.5 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 5/150 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + +      IG   + D    +     ++ P G + +   +  HGI 
Sbjct: 8   MHAVAIDFET--ANEQRASPCSIGLAWINDGVIESVE-HHYIRPPGMRFASFNIAFHGIG 64

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D   F ++ +             +AHNA FDV  I            +   +   
Sbjct: 65  PEQVEDAEEFPAVLAAIAPRLEG--RTVLAHNAAFDVSVIRNTCDHYGLTYPEFDYLCTV 122

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156
                       + LN++C   G+   H  
Sbjct: 123 KLAQISWPEFPSHKLNNVCAELGVAFRHHD 152


>gi|323126941|gb|ADX24238.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 820

 Score = 44.5 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 9/104 (8%)

Query: 4   KNKM--RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            N+M  +  V D+E T  ++     II++G V +++  +   T+Q  + P+    S    
Sbjct: 2   SNEMTRKYAVVDLEAT--NAGATAAIIQVGIV-IIEGKEVVETYQTDINPH-EPLSDHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
            L GITD  L   P FS +    ++  ++    ++AHN KFD  
Sbjct: 58  ALTGITDAQLAQAPEFSQVAKTIYELISD--CVFVAHNVKFDAN 99


>gi|251782080|ref|YP_002996382.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390709|dbj|BAH81168.1| ATP-dependent DNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 820

 Score = 44.5 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 9/104 (8%)

Query: 4   KNKM--RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            N+M  +  V D+E T  ++     II++G V +++  +   T+Q  + P+    S    
Sbjct: 2   SNEMTRKYAVVDLEAT--NAGATAAIIQVGIV-IIEGKEVVETYQTDINPH-EPLSDHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
            L GITD  L   P FS +    ++  ++    ++AHN KFD  
Sbjct: 58  ALTGITDAQLAQAPEFSQVAKTIYELISD--CVFVAHNVKFDAN 99


>gi|227357138|ref|ZP_03841507.1| exoribonuclease II [Proteus mirabilis ATCC 29906]
 gi|227162670|gb|EEI47637.1| exoribonuclease II [Proteus mirabilis ATCC 29906]
          Length = 192

 Score = 44.5 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 22 IDLEMTGLDPERDRIIEIA 40


>gi|12519147|gb|AAG59361.1|AE005649_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13364618|dbj|BAB38564.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|209750348|gb|ACI73481.1| hypothetical protein ECs5141 [Escherichia coli]
 gi|209750350|gb|ACI73482.1| hypothetical protein ECs5141 [Escherichia coli]
 gi|209750352|gb|ACI73483.1| hypothetical protein ECs5141 [Escherichia coli]
 gi|209750354|gb|ACI73484.1| hypothetical protein ECs5141 [Escherichia coli]
 gi|209750356|gb|ACI73485.1| hypothetical protein ECs5141 [Escherichia coli]
          Length = 204

 Score = 44.5 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 24 MSANENNLIWIDLEMTGLDPERDRIIEIA 52


>gi|311741087|ref|ZP_07714912.1| DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303889|gb|EFQ79967.1| DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 432

 Score = 44.5 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +   ++TTG+     RI+ I A+   D  +  + F   L P           LHG++  
Sbjct: 55  YVALTLQTTGIHPSTGRIVTIDAIAFNDAGEQGQLFHAVLKP---DIDAGPRHLHGLSTT 111

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
            ++  P+F  I        + +          +  
Sbjct: 112 DIEQAPAFGKILKSLDRLIDGRTLIVHDLPYTWGF 146


>gi|330502360|ref|YP_004379229.1| ribonuclease T [Pseudomonas mendocina NK-01]
 gi|328916646|gb|AEB57477.1| ribonuclease T [Pseudomonas mendocina NK-01]
          Length = 224

 Score = 44.5 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 66/193 (34%), Gaps = 13/193 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVF-LCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI A  +               F + P  G      AL+  G
Sbjct: 32  VVVDVETGGFNSATDALLEIAATTIAMDESGFLYPDHTHFFRIEPFEGANIEQAALEFTG 91

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +       + A  + HN+ FD+GF+NA + R    
Sbjct: 92  IKLDHPLRMAVSEEHALGEIFKGLRKSIKSAGCKRAILVGHNSSFDLGFLNAAVARCGIK 151

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    +  H A  D+   ++++  ++ 
Sbjct: 152 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIEFDGKEAHSARYDTEKTAELFCGIVN 211

Query: 177 GGSQINFGFKTNE 189
              ++    + ++
Sbjct: 212 RWKEMGGWDEFDQ 224


>gi|301023446|ref|ZP_07187227.1| exonuclease [Escherichia coli MS 69-1]
 gi|300396998|gb|EFJ80536.1| exonuclease [Escherichia coli MS 69-1]
          Length = 199

 Score = 44.5 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 19 MSANENNLIWIDLEMTGLDPERDRIIEIA 47


>gi|213965286|ref|ZP_03393483.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           amycolatum SK46]
 gi|213952138|gb|EEB63523.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           amycolatum SK46]
          Length = 545

 Score = 44.5 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 66/176 (37%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEALKLHGIT 66
              FD+ET   +     II++G   +     T R +     P           + +HGIT
Sbjct: 166 FAAFDVET--ANEDTGSIIQLGVAVVRGGKVTER-YSWMCRPPKGLEYFDEANVAIHGIT 222

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +  +PSF    ++F D     + + +AHNA+FD   ++   +         +     
Sbjct: 223 AADVAGEPSFPEQLAKFVD--VVGDLDVVAHNARFDFTALSRACRAEGIPAPKLNFACTY 280

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +   + +       L +L +  G +    + H A  D+   ++V + +M      +
Sbjct: 281 MWARQMQLGLPNLKLPTLAEAAGAS--LENHHDATADAVACAEVALWLMEQQRATS 334


>gi|332290039|ref|YP_004420891.1| oligoribonuclease [Gallibacterium anatis UMN179]
 gi|330432935|gb|AEC17994.1| oligoribonuclease [Gallibacterium anatis UMN179]
          Length = 182

 Score = 44.5 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          ++ +K   I  D+E TGLD   DRIIEI 
Sbjct: 1  MQLDKQNLIWIDLEMTGLDPNKDRIIEIA 29


>gi|268679542|ref|YP_003303973.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617573|gb|ACZ11938.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 292

 Score = 44.5 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 6/184 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I+ D ETTG+  + DRI ++  + L +  +          P    +       H   
Sbjct: 1   MKIILLDTETTGI-YEKDRICQLAFLVLNEELEVEEIHNDLCQPPVMISYEAMAVHHITP 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +    +     +   +     N      + HNA FD+  +  E      + +D  RI+  
Sbjct: 60  ERVAHEVSCIQTRAYQRLLELNTPYNLLVIHNASFDLTMLEKEGFVSQMNLVDTFRILRA 119

Query: 127 LSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                     +         +               H AL D  +L  ++ K+    S  
Sbjct: 120 YYPNEGSFSLQYKRYQWGLYHQEATFQKKHTVSIEAHDALGDVVVLKHLFEKLCEEHSLP 179

Query: 182 NFGF 185
               
Sbjct: 180 QMML 183


>gi|207743707|ref|YP_002260099.1| oligoribonuclease protein [Ralstonia solanacearum IPO1609]
 gi|206595106|emb|CAQ62033.1| oligoribonuclease protein [Ralstonia solanacearum IPO1609]
          Length = 219

 Score = 44.5 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL  +NDRIIE+  V
Sbjct: 33 LDMEMTGLSPENDRIIEVAMV 53


>gi|239918000|ref|YP_002957558.1| DNA polymerase III, epsilon subunit [Micrococcus luteus NCTC 2665]
 gi|281415824|ref|ZP_06247566.1| DNA polymerase III subunit epsilon [Micrococcus luteus NCTC 2665]
 gi|239839207|gb|ACS31004.1| DNA polymerase III, epsilon subunit [Micrococcus luteus NCTC 2665]
          Length = 228

 Score = 44.5 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 69/202 (34%), Gaps = 3/202 (1%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG D +   I+    V + ++ +   + +  + P     +  A      T+    
Sbjct: 11  FDLETTGRDPRTALIVTATLVMVDEHGRAASSAEWLVDPGVPIPAEAAEVHGVTTERAQA 70

Query: 72  DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +    +   +E  +   +        +A N  +D   ++ E +R    PL+   +ID   
Sbjct: 71  EGMPAAQGVTEITETLRDLFAAGIPVVAFNGVYDFTVMDREARRHGLTPLEARPVIDPFV 130

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           + ++     +             ++  + H +  D+     V   +     Q+       
Sbjct: 131 LDKQVDRFRKGKRTLSAVSEHYGVTLENAHTSAADALAAVQVADALAAQYEQLRMAPAEL 190

Query: 189 EDRFFKEEKKTVPNISLLKRDK 210
            +R  + + +   +     R K
Sbjct: 191 HERQVRWKAEQAESFEQYLRRK 212


>gi|167034808|ref|YP_001670039.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           GB-1]
 gi|166861296|gb|ABY99703.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           GB-1]
          Length = 183

 Score = 44.5 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 5/112 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E TT   G       IIEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLVIDLEATTDEGGWPVTEMEIIEIGASLVTREGREVDHFQRFVRPRRRPQLTPFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            I+   +     F  +++    +      +  A  +  D        +    
Sbjct: 64  HISQADVDSAAPFREVWANVERWLGHHRGQLQAWVSWGDYDRQQLHQEWQQH 115


>gi|255633388|gb|ACU17051.1| unknown [Glycine max]
          Length = 242

 Score = 44.5 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN 41
           D+E TGL+ + DRI+EI  + + D + T 
Sbjct: 64 IDLEMTGLNIEVDRILEIACI-ITDGNLTK 92


>gi|70731551|ref|YP_261292.1| exonuclease [Pseudomonas fluorescens Pf-5]
 gi|68345850|gb|AAY93456.1| exonuclease [Pseudomonas fluorescens Pf-5]
          Length = 179

 Score = 44.5 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E TT   G       IIEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLVIDLEATTDEGGWPVSEMEIIEIGATLVNRQGREQDHFQRFVRPLRRPMLTPFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            IT   +      S ++  F  +  +         +  D      +L+  N+        
Sbjct: 64  HITQANIDSAAPLSEVWGLFERWLGQHQPRLEGWASWGDYDRKQLQLEWHNQQLHSLLNE 123

Query: 124 IDTLSIARRK 133
           +  +++ +R 
Sbjct: 124 VPHMNLKQRF 133


>gi|187927908|ref|YP_001898395.1| oligoribonuclease [Ralstonia pickettii 12J]
 gi|187724798|gb|ACD25963.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
          12J]
          Length = 219

 Score = 44.5 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL  +NDRIIE+  V
Sbjct: 33 LDMEMTGLSPENDRIIEVAVV 53


>gi|91213714|ref|YP_543700.1| oligoribonuclease [Escherichia coli UTI89]
 gi|237703830|ref|ZP_04534311.1| oligoribonuclease [Escherichia sp. 3_2_53FAA]
 gi|254037177|ref|ZP_04871254.1| oligoribonuclease [Escherichia sp. 1_1_43]
 gi|332280947|ref|ZP_08393360.1| oligoribonuclease [Shigella sp. D9]
 gi|26111489|gb|AAN83671.1|AE016771_182 Oligoribonuclease [Escherichia coli CFT073]
 gi|91075288|gb|ABE10169.1| oligoribonuclease [Escherichia coli UTI89]
 gi|226840283|gb|EEH72285.1| oligoribonuclease [Escherichia sp. 1_1_43]
 gi|226901742|gb|EEH88001.1| oligoribonuclease [Escherichia sp. 3_2_53FAA]
 gi|332103299|gb|EGJ06645.1| oligoribonuclease [Shigella sp. D9]
          Length = 220

 Score = 44.5 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 40 MSANENNLIWIDLEMTGLDPERDRIIEIA 68


>gi|213420151|ref|ZP_03353217.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
          str. E01-6750]
          Length = 77

 Score = 44.5 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL 35
          +V D+ET G ++K D ++EI A+ L 
Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLK 45


>gi|158284602|ref|XP_307582.4| Anopheles gambiae str. PEST AGAP012804-PA [Anopheles gambiae str.
          PEST]
 gi|157020970|gb|EAA03378.5| AGAP012804-PA [Anopheles gambiae str. PEST]
          Length = 228

 Score = 44.5 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          M   +    +  D+E TGLD + DRI+EI  +
Sbjct: 38 MSETSVQNLVWIDLEMTGLDVEKDRILEIACI 69


>gi|83745794|ref|ZP_00942851.1| Oligoribonuclease [Ralstonia solanacearum UW551]
 gi|83727484|gb|EAP74605.1| Oligoribonuclease [Ralstonia solanacearum UW551]
          Length = 289

 Score = 44.5 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 12  FDIETTGLDSKNDRIIEIGAV 32
            D+E TGL  +NDRIIE+  V
Sbjct: 103 LDMEMTGLSPENDRIIEVAMV 123


>gi|304393986|ref|ZP_07375910.1| exodeoxyribonuclease 10 [Ahrensia sp. R2A130]
 gi|303293961|gb|EFL88337.1| exodeoxyribonuclease 10 [Ahrensia sp. R2A130]
          Length = 230

 Score = 44.5 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 58/171 (33%), Gaps = 15/171 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           V D ETTG       ++EI   +L      +++   T    L P       EA+ +H IT
Sbjct: 9   VIDTETTGFLPD-ASMVEIAWTDLLVGDDGFAEIGETISHLLKPK-HPIGLEAMAVHHIT 66

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + D P    +        +  +    AHNA FD GF   + + I           D 
Sbjct: 67  EAMVADAPMLGQLDP----QPSIGSDYLAAHNADFDKGFYPVDREWICTLKCSRRLWEDA 122

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            S          N    +             H A  DS++ + +  +M+  
Sbjct: 123 PSHKNGVLRYWLNLDADM-----DYDRTLPAHRAGPDSYVTAYLLERMLRE 168


>gi|307243536|ref|ZP_07525684.1| exonuclease [Peptostreptococcus stomatis DSM 17678]
 gi|306493092|gb|EFM65097.1| exonuclease [Peptostreptococcus stomatis DSM 17678]
          Length = 460

 Score = 44.5 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 8/47 (17%)

Query: 9  KIVFDIETTG---LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
           +  D+E TG   L+     IIE+ A+++ D    +  F   + P  
Sbjct: 19 YVAIDLELTGNYCLNY----IIELAALKVRDGVIIDE-FSSLVRPPD 60


>gi|167470349|ref|ZP_02335053.1| ribonuclease T [Yersinia pestis FV-1]
          Length = 64

 Score = 44.5 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 19/25 (76%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34
          +V D+ET G ++++D ++EI AV L
Sbjct: 31 VVIDVETAGFNAQSDALLEIAAVTL 55


>gi|149203420|ref|ZP_01880390.1| DNA polymerase III subunit epsilon [Roseovarius sp. TM1035]
 gi|149143253|gb|EDM31292.1| DNA polymerase III subunit epsilon [Roseovarius sp. TM1035]
          Length = 172

 Score = 44.5 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ 45
          V D+ETTGL  + D +I++  +       T R  +
Sbjct: 51 VLDVETTGLSHEADEVIQLAMLPFTYELNTGRILE 85


>gi|300920814|ref|ZP_07137214.1| exonuclease [Escherichia coli MS 115-1]
 gi|537006|gb|AAA97061.1| ORF_o204a [Escherichia coli str. K-12 substr. MG1655]
 gi|73858127|gb|AAZ90834.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81243603|gb|ABB64313.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|115515635|gb|ABJ03710.1| oligoribonuclease [Escherichia coli APEC O1]
 gi|300412206|gb|EFJ95516.1| exonuclease [Escherichia coli MS 115-1]
          Length = 204

 Score = 44.5 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 24 MSANENNLIWIDLEMTGLDPERDRIIEIA 52


>gi|108757524|ref|YP_635264.1| oligoribonuclease [Myxococcus xanthus DK 1622]
 gi|108461404|gb|ABF86589.1| oligoribonuclease [Myxococcus xanthus DK 1622]
          Length = 183

 Score = 44.5 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          MI   + R +  D+E TGLD +   IIE+G +
Sbjct: 1  MISSEQ-RFVWLDLEMTGLDPETCSIIEVGVI 31


>gi|163816457|ref|ZP_02207821.1| hypothetical protein COPEUT_02646 [Coprococcus eutactus ATCC 27759]
 gi|158448157|gb|EDP25152.1| hypothetical protein COPEUT_02646 [Coprococcus eutactus ATCC 27759]
          Length = 232

 Score = 44.5 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 1   MIRKNK---MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLC 49
           MIR  K   M  IV D+E   LD K         + +IEIGAV + +  +    F++++ 
Sbjct: 1   MIRCRKGAKMVHIVVDLEMNWLDFKYENERKISTNEVIEIGAVTMNEKFEEIGAFKMYVK 60

Query: 50  PNGRKNSPEALKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
           P   +   + ++   GIT + L+D P F+  F  F  +      E + +  
Sbjct: 61  PQFNEKVVKKVEKLTGITMDKLQDSPVFADAFDAFIKWCISFGEEVVMYGW 111


>gi|146306423|ref|YP_001186888.1| ribonuclease T [Pseudomonas mendocina ymp]
 gi|145574624|gb|ABP84156.1| RNAse T [Pseudomonas mendocina ymp]
          Length = 224

 Score = 44.5 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 66/193 (34%), Gaps = 13/193 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVF-LCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI A  +               F + P  G      AL+  G
Sbjct: 32  VVVDVETGGFNSATDALLEIAATTIAMDESGFLYPDHTHFFRIEPFEGANIEAAALEFTG 91

Query: 65  ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +       + A  + HN+ FD+GF+NA + R    
Sbjct: 92  IKLDHPLRMAVSEEHALGEIFKGLRKSIKSAGCKRAILVGHNSSFDLGFLNAAVARCGIK 151

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    +  H A  D+   ++++  ++ 
Sbjct: 152 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIEFDGKEAHSARYDTEKTAELFCGIVN 211

Query: 177 GGSQINFGFKTNE 189
              ++    + ++
Sbjct: 212 RWKEMGGWDEFDQ 224


>gi|308179821|ref|YP_003923949.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308045312|gb|ADN97855.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 173

 Score = 44.5 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 7/160 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D ET   ++K D    +    + +   ++  F   + P         +++HGI +  + D
Sbjct: 2   DFET--ANAKRDSACSLALTVVRNNQISDE-FYTLIKPES-DFFWRNVQIHGIHEADVAD 57

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P F     +  + F +++   IAHNA FD+G +   L        +   +    +  R 
Sbjct: 58  APKF-PDVWQHIEPFFQRDRLVIAHNAPFDIGVLRNTLAHYGISAPEYLSMDTVNTSQRF 116

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 + L+++C+   I + H   H AL DS   +++ +
Sbjct: 117 YPELPNHKLDTVCQALDIDLQH--HHNALDDSLACANILL 154


>gi|110346113|gb|ABG72350.1| oligoribonuclease [Escherichia coli 536]
          Length = 229

 Score = 44.5 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 49 MSANENNLIWIDLEMTGLDPERDRIIEIA 77


>gi|300721471|ref|YP_003710746.1| oligoribonuclease [Xenorhabdus nematophila ATCC 19061]
 gi|297627963|emb|CBJ88512.1| oligoribonuclease [Xenorhabdus nematophila ATCC 19061]
          Length = 181

 Score = 44.5 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 11 IDLEMTGLDPERDRIIEIA 29


>gi|30043801|gb|AAP19520.1| hypothetical protein S4584 [Shigella flexneri 2a str. 2457T]
 gi|56384132|gb|AAN45737.2| orf, conserved hypothetical protein [Shigella flexneri 2a str.
          301]
 gi|110617631|gb|ABF06298.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|281603627|gb|ADA76611.1| Oligoribonuclease [Shigella flexneri 2002017]
          Length = 204

 Score = 44.2 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 24 MSANENNLIWIDLEMTGLDPERDRIIEIA 52


>gi|299132766|ref|ZP_07025961.1| Exodeoxyribonuclease I [Afipia sp. 1NLS2]
 gi|298592903|gb|EFI53103.1| Exodeoxyribonuclease I [Afipia sp. 1NLS2]
          Length = 473

 Score = 44.2 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNR 42
           + FD ETTGL    D+I+   A+    + ++  R
Sbjct: 6  FVFFDTETTGLKHGFDQIVHFAAIRTDANLNEIGR 40


>gi|261248373|emb|CBG26210.1| exonuclease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
          Length = 189

 Score = 44.2 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 8/143 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL +    I+EI  ++              + P  +    E + +HGIT+E
Sbjct: 15  FLFIDTETTGLGAD-AEIVEICIIDSHGSIM----LNTLIKP-TKSIPDEEIAIHGITNE 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+++ I     + F         +NA +D+  I        +  +    ++   S
Sbjct: 69  MVAFAPAWTDICRTLEELFMRFGFV--IYNADYDIRLIKQTYALHGQSSVAAPYMLAYNS 126

Query: 129 IARRKHPSSRNDLNSLCKRYGIT 151
           +      +   D     K Y   
Sbjct: 127 VCAMMLYAEYRDEPGKYKGYKWH 149


>gi|18496941|ref|NP_569791.1| hypothetical protein TM4_gp57 [Mycobacterium phage TM4]
 gi|4336092|gb|AAD17623.1| gp57 [Mycobacterium phage TM4]
          Length = 177

 Score = 44.2 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 58/170 (34%), Gaps = 11/170 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV--FL-CPNGRKNSPEALKLHGIT 66
           +V D ETTGL      I+E+ AV +     T        F+      +  P A++++   
Sbjct: 6   VVVDCETTGL-HDGAAILEVAAVNID----TGAELHFVPFVTREQLAQAQPMAMQMNRYY 60

Query: 67  DEFLKDKPSFSSIFSEFWDFF--NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +  +  +          +           +   N  FD   + A +     +       +
Sbjct: 61  ERGIWQRRLSPDSTDAAYWKLANMLAGNTFGGSNPAFDSRLLAAAMPDGAPEWHHRLADL 120

Query: 125 DTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              +  +    P     L+++C+R G+T+S R    A   +       ++
Sbjct: 121 AAFTAGKLNLDPVELPGLDAVCERLGVTVSDRHSALADAHATATCFTILR 170


>gi|224824186|ref|ZP_03697294.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum
          2002]
 gi|224603605|gb|EEG09780.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum
          2002]
          Length = 181

 Score = 44.2 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLD 36
           D+E TGL+  +DRIIEI  V    
Sbjct: 11 LDMEMTGLNPDSDRIIEIAVVVTDG 35


>gi|300940651|ref|ZP_07155212.1| exonuclease [Escherichia coli MS 21-1]
 gi|300454539|gb|EFK18032.1| exonuclease [Escherichia coli MS 21-1]
          Length = 199

 Score = 44.2 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 19 MSANENNLIWIDLEMTGLDPERDRIIEIA 47


>gi|227886794|ref|ZP_04004599.1| exoribonuclease II [Escherichia coli 83972]
 gi|300816535|ref|ZP_07096756.1| exonuclease [Escherichia coli MS 107-1]
 gi|300821256|ref|ZP_07101404.1| exonuclease [Escherichia coli MS 119-7]
 gi|300899700|ref|ZP_07117927.1| exonuclease [Escherichia coli MS 198-1]
 gi|300905993|ref|ZP_07123717.1| exonuclease [Escherichia coli MS 84-1]
 gi|300922430|ref|ZP_07138550.1| exonuclease [Escherichia coli MS 182-1]
 gi|300929272|ref|ZP_07144748.1| exonuclease [Escherichia coli MS 187-1]
 gi|300974947|ref|ZP_07172786.1| exonuclease [Escherichia coli MS 45-1]
 gi|300975250|ref|ZP_07172914.1| exonuclease [Escherichia coli MS 200-1]
 gi|301047612|ref|ZP_07194678.1| exonuclease [Escherichia coli MS 185-1]
 gi|301302580|ref|ZP_07208710.1| exonuclease [Escherichia coli MS 124-1]
 gi|301325927|ref|ZP_07219348.1| exonuclease [Escherichia coli MS 78-1]
 gi|301646609|ref|ZP_07246475.1| exonuclease [Escherichia coli MS 146-1]
 gi|309796975|ref|ZP_07691375.1| exonuclease [Escherichia coli MS 145-7]
 gi|227836136|gb|EEJ46602.1| exoribonuclease II [Escherichia coli 83972]
 gi|281181261|dbj|BAI57591.1| oligoribonuclease [Escherichia coli SE15]
 gi|300300491|gb|EFJ56876.1| exonuclease [Escherichia coli MS 185-1]
 gi|300308749|gb|EFJ63269.1| exonuclease [Escherichia coli MS 200-1]
 gi|300356743|gb|EFJ72613.1| exonuclease [Escherichia coli MS 198-1]
 gi|300402160|gb|EFJ85698.1| exonuclease [Escherichia coli MS 84-1]
 gi|300410435|gb|EFJ93973.1| exonuclease [Escherichia coli MS 45-1]
 gi|300421249|gb|EFK04560.1| exonuclease [Escherichia coli MS 182-1]
 gi|300462765|gb|EFK26258.1| exonuclease [Escherichia coli MS 187-1]
 gi|300526145|gb|EFK47214.1| exonuclease [Escherichia coli MS 119-7]
 gi|300530765|gb|EFK51827.1| exonuclease [Escherichia coli MS 107-1]
 gi|300842105|gb|EFK69865.1| exonuclease [Escherichia coli MS 124-1]
 gi|300847280|gb|EFK75040.1| exonuclease [Escherichia coli MS 78-1]
 gi|301075156|gb|EFK89962.1| exonuclease [Escherichia coli MS 146-1]
 gi|308119388|gb|EFO56650.1| exonuclease [Escherichia coli MS 145-7]
 gi|315255507|gb|EFU35475.1| exonuclease [Escherichia coli MS 85-1]
 gi|315288511|gb|EFU47909.1| exonuclease [Escherichia coli MS 110-3]
 gi|315294059|gb|EFU53411.1| exonuclease [Escherichia coli MS 153-1]
 gi|315297605|gb|EFU56882.1| exonuclease [Escherichia coli MS 16-3]
 gi|324008605|gb|EGB77824.1| exonuclease [Escherichia coli MS 57-2]
 gi|324019342|gb|EGB88561.1| exonuclease [Escherichia coli MS 117-3]
          Length = 199

 Score = 44.2 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 19 MSANENNLIWIDLEMTGLDPERDRIIEIA 47


>gi|300957822|ref|ZP_07170001.1| exonuclease [Escherichia coli MS 175-1]
 gi|300315482|gb|EFJ65266.1| exonuclease [Escherichia coli MS 175-1]
          Length = 199

 Score = 44.2 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 19 MSANENNLIWIDLEMTGLDPERDRIIEIA 47


>gi|226355452|ref|YP_002785192.1| DNA polymerase III subunit [Deinococcus deserti VCD115]
 gi|226317442|gb|ACO45438.1| putative DNA-directed DNA polymerase (DNA polymerase III, subunit)
           [Deinococcus deserti VCD115]
          Length = 204

 Score = 44.2 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 72/166 (43%), Gaps = 6/166 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D E+TG++  +D +I++G   L   +      +  ++ P  R    + + +HG++ E
Sbjct: 14  VALDFESTGMNPAHDEVIQVGLAPLDAGAVDLGGAWAQWVRP-TRPFRADTVAIHGLSYE 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P+ S++  E            +AH A  ++GF+     R           +    
Sbjct: 73  LLQEAPAISTVRLELGARLQG--RVLVAHYAALELGFLKRWGLRPAATLDTLMLALALDR 130

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +          L++L +R+G+ +     H AL D+ + + V++ +
Sbjct: 131 QSTATARRDAYTLSALARRFGVEVYGE--HDALADALITAQVFLVL 174


>gi|313896094|ref|ZP_07829648.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529365|ref|ZP_08030453.1| exonuclease [Selenomonas artemidis F0399]
 gi|312975519|gb|EFR40980.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320138331|gb|EFW30225.1| exonuclease [Selenomonas artemidis F0399]
          Length = 179

 Score = 44.2 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 8/170 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFD ETTG  S  D ++ +  V+    +  +  +     P  +K  P+A K++ I+ 
Sbjct: 4   KILVFDTETTGFRSD-DEVLTLAVVDGAGKTVVDGMYA----PVSKKEWPDAEKVNRISP 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV---GFINAELQRINKDPLDPSRII 124
             + D     +  +E    FN+     + +N +FD+   G     +   N+  +  +   
Sbjct: 59  AMVADCAPILTHRAELERLFNDPETLLVGYNIEFDIRLLGQSGIRITNPNRHDVMLAFSE 118

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  R+       L    + Y         HGAL D+      Y +M
Sbjct: 119 MRKVPDARRGGYRWWKLTECAEYYRYNWGTTEAHGALADTLATLYCYDQM 168


>gi|270158079|ref|ZP_06186736.1| oligoribonuclease [Legionella longbeachae D-4968]
 gi|289163655|ref|YP_003453793.1| oligoribonuclease [Legionella longbeachae NSW150]
 gi|269990104|gb|EEZ96358.1| oligoribonuclease [Legionella longbeachae D-4968]
 gi|288856828|emb|CBJ10639.1| oligoribonuclease [Legionella longbeachae NSW150]
          Length = 185

 Score = 44.2 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          KN    I  D+E TGL+ + DRIIE+  V
Sbjct: 2  KNNQNLIWIDLEMTGLNPEQDRIIELATV 30


>gi|227541256|ref|ZP_03971305.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC
            51866]
 gi|227182972|gb|EEI63944.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC
            51866]
          Length = 1246

 Score = 44.2 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 8/170 (4%)

Query: 9    KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
              V +++T+G+  + DRIIEIG V      K   T+   + P   + S     +HGI++ 
Sbjct: 849  FAVLNVKTSGIS-ERDRIIEIGIVLATLNGKVEGTYTTLINP---RRSFSDSAIHGISER 904

Query: 69   FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 P F  +  +  +         IAH+A F    +  E  R N   +  +    T+S
Sbjct: 905  MTVATPVFEEVADDIAELL--DRRILIAHDAPFVSKQLGREFSRSNVKAIHLNDGYCTMS 962

Query: 129  IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             + +   SS   L+S     G+   H     AL D+   +++   ++  G
Sbjct: 963  HSPKLLGSSGRSLSSALDAAGLKNEHSHC--ALDDAMATANLLNVLLHKG 1010


>gi|81248005|gb|ABB68713.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 204

 Score = 44.2 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 24 MSANENNLIWIDLEMTGLDPERDRIIEIA 52


>gi|262067765|ref|ZP_06027377.1| putative exonuclease [Fusobacterium periodonticum ATCC 33693]
 gi|291378491|gb|EFE86009.1| putative exonuclease [Fusobacterium periodonticum ATCC 33693]
          Length = 191

 Score = 44.2 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 66/192 (34%), Gaps = 22/192 (11%)

Query: 7   MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-----------NGRK 54
           M KI+F D ET G++ +   +I++  +  +D     + F  ++ P             + 
Sbjct: 1   MNKIIFIDTETGGVNPEKATLIQLSGIIRIDKKDVEK-FNFYIKPFKNSEVNEKALEVQG 59

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            + E LK     +E    K   + +      +          +N +FDV  + A  QR  
Sbjct: 60  RTLEELKTDKYVEEKEVYKQFINLLDKYIDKYDRTDKFIVAGYNVRFDVDILKAFFQRHG 119

Query: 115 KDPLDPS---------RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            + L              I  L IA        N L + CK +GI +        +  + 
Sbjct: 120 NNFLFSYLDSSMLDPLYSIRLLQIAEILPVLENNKLETWCKHFGIELKAHDSLENIEATK 179

Query: 166 LLSDVYIKMMVG 177
            L    I ++  
Sbjct: 180 KLIGKLISLIRK 191


>gi|241763009|ref|ZP_04761071.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
 gi|241367961|gb|EER62180.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
          Length = 179

 Score = 44.2 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 11/173 (6%)

Query: 7   MR--KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA----- 59
           MR   I  D+ET+G       ++ +GA  + D     +TF V + P  R   PEA     
Sbjct: 1   MREHYISVDVETSGPIPGEFSMLSLGASVVDDD---GKTFHVQIKPLNRNAVPEALAVTG 57

Query: 60  -LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                             +          N     ++  NA FD  F+N    R      
Sbjct: 58  LSLETLECHGTEPAIAMENFASWLEGVRPNGIKPVFVGLNAPFDWSFVNYYFVRFCGSNP 117

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                +D  ++       + +   S      +    +  H AL D+   ++++
Sbjct: 118 FGYTALDIKAMYMGATGCTWSQTTSSQMAKRLLPKRKGTHNALDDALYQAELF 170


>gi|194468196|ref|ZP_03074182.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri
           100-23]
 gi|194453049|gb|EDX41947.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri
           100-23]
          Length = 178

 Score = 44.2 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 7/181 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      +    + +       F   + P+ +       ++HGI 
Sbjct: 1   MNFIAMDFET--ANGKRYSACSLALTIVRNGQ-IADEFYTLINPHTKFF-WRNTQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +++ P F     E  + F   +   IAHN +FD   +   L+  N +      +   
Sbjct: 57  ERDVQNAPDF-PEVWEHINQFYTPDKLVIAHNNRFDNSVLRNTLEHYNIEVPAYQTLDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            S  +     +   LN++C    I     H +   A   +++L            Q    
Sbjct: 116 ASSRQLIPGLTNYKLNTVCDALNIDLHHHHNALDDAQACANILLYQSKHFTPQQIQPFIN 175

Query: 185 F 185
            
Sbjct: 176 L 176


>gi|148543638|ref|YP_001271008.1| exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri
           DSM 20016]
 gi|184153052|ref|YP_001841393.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112]
 gi|227363391|ref|ZP_03847517.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3]
 gi|227545077|ref|ZP_03975126.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A]
 gi|300909253|ref|ZP_07126714.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
 gi|325682001|ref|ZP_08161519.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM4-1A]
 gi|148530672|gb|ABQ82671.1| Exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri
           DSM 20016]
 gi|183224396|dbj|BAG24913.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112]
 gi|227071580|gb|EEI09877.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3]
 gi|227184926|gb|EEI64997.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A]
 gi|300893118|gb|EFK86477.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
 gi|324978645|gb|EGC15594.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM4-1A]
          Length = 179

 Score = 44.2 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 7/182 (3%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            M  I  D ET   + K      +    + +       F   + P+ +       ++HGI
Sbjct: 1   MMNFIAMDFET--ANGKRYSACSLALTIVRNGQ-IADEFYTLINPHTKFF-WRNTQIHGI 56

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +++ P F     E  + F   +   IAHN +FD   +   L+  N +      +  
Sbjct: 57  HERDVQNAPDF-PEVWEHINQFYTPDKLVIAHNNRFDNSVLRNTLEHYNIEVPAYQTLDT 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             S  +     +   LN++C    I     H +   A   +++L            Q   
Sbjct: 116 VASSRQLIPGLTNYKLNTVCDALNIDLHHHHNALDDAQACANILLYQSKHFTPQQIQPFI 175

Query: 184 GF 185
             
Sbjct: 176 NL 177


>gi|28377661|ref|NP_784553.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum WCFS1]
 gi|254555842|ref|YP_003062259.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum JDM1]
 gi|28270494|emb|CAD63396.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum WCFS1]
 gi|254044769|gb|ACT61562.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum JDM1]
          Length = 173

 Score = 44.2 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 7/160 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D ET   ++K D    +    + +   ++  F   + P         +++HGI +  + D
Sbjct: 2   DFET--ANAKRDSACSLALTVVRNNQISDE-FYTLIKPES-DFFWRNVQIHGIHEADVAD 57

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P F     +  + F +++   IAHNA FD+G +   L        +   +    +  R 
Sbjct: 58  APKF-PDVWQHIEPFFQRDRLVIAHNAPFDIGVLRNTLAHYGISAPEYLSMDTVKTSQRF 116

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 + L+++C+   I + H   H AL DS   +++ +
Sbjct: 117 YPELPNHKLDTVCQALDIDLQH--HHNALDDSLACANILL 154


>gi|315636786|ref|ZP_07892012.1| DNA polymerase III epsilon subunit [Arcobacter butzleri JV22]
 gi|315478912|gb|EFU69619.1| DNA polymerase III epsilon subunit [Arcobacter butzleri JV22]
          Length = 272

 Score = 44.2 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 9/196 (4%)

Query: 11  VFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             DIET G   K   +IIE+GAV+  +  +   +F   +    ++  P   ++  IT   
Sbjct: 85  FVDIETNGGTPKKGFQIIELGAVKYKNG-EVLDSFNSLV--FAKEIPPYIQEVTKITPAM 141

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+  P    +  +F +F  +    +IAH+ KFD  FI+   ++ +   L  +R + T+ +
Sbjct: 142 LETAPRIEKVLKDFKEFLGD--DVFIAHDIKFDYNFISDSFEKYSLGKL-LNRKLCTIDL 198

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           A+R   S +  L+SL +   I I   + H A  D+     V+ K +            + 
Sbjct: 199 AKRTIKSEKYGLSSLKELLNIDI--ENHHRAYYDALTTQIVFEKCLKNIDTNKIKTVEDL 256

Query: 190 DRFFKEEKKTVPNISL 205
             F K +      I  
Sbjct: 257 INFSKSDSIIKNEIKR 272


>gi|254457146|ref|ZP_05070574.1| exonuclease [Campylobacterales bacterium GD 1]
 gi|207085938|gb|EDZ63222.1| exonuclease [Campylobacterales bacterium GD 1]
          Length = 247

 Score = 44.2 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 7/113 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + ++ D ETTG+  +NDR+I++G V L     + +  F      +    S  A+++HGIT
Sbjct: 4   KYVILDTETTGVG-ENDRVIQLGYVVLGAKDVEVHNEFYS----SDVPISFGAMEVHGIT 58

Query: 67  DEFLKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + L++KP+     +       N      I HNA FD+G +  E        +
Sbjct: 59  PDMLENKPACRDSVAYKRLCELNVSENYMIIHNAPFDLGMLEKEGFNTQMKVI 111


>gi|194449117|ref|YP_002047241.1| exonuclease [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194407421|gb|ACF67640.1| exonuclease [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
          Length = 198

 Score = 44.2 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 53/174 (30%), Gaps = 14/174 (8%)

Query: 11  VFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             D ETTGL    D   I+EI  ++   +          + P  +    EA+ +HGIT+E
Sbjct: 26  FIDTETTGL---GDDAEIVEICIIDSHGFIL----LNTLVKP-TKPIPDEAIAIHGITNE 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+++ I     +           +NA +D+  I        +       ++    
Sbjct: 78  MVAYAPAWTDICGAVEELIRRFGFV--IYNADYDLRLIRQTYALNGRPSEGAPWMLAA-- 133

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +               K +G          A     +    +  +      + 
Sbjct: 134 HSVCAMKLYAEYRGEPGKYHGYKWHKLVDAAAHEGVVIEGKAHRALADCKMTLG 187


>gi|299066912|emb|CBJ38107.1| oligoribonuclease [Ralstonia solanacearum CMR15]
          Length = 219

 Score = 44.2 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL  +NDRIIE+  V
Sbjct: 33 LDMEMTGLSPENDRIIEVAMV 53


>gi|213022870|ref|ZP_03337317.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
          str. 404ty]
          Length = 43

 Score = 44.2 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAV 32
          +V D+ET G ++K D ++EI A+
Sbjct: 20 VVIDVETAGFNAKTDALLEIAAI 42


>gi|77164160|ref|YP_342685.1| exonuclease [Nitrosococcus oceani ATCC 19707]
 gi|254435603|ref|ZP_05049110.1| exonuclease superfamily [Nitrosococcus oceani AFC27]
 gi|76882474|gb|ABA57155.1| Exonuclease [Nitrosococcus oceani ATCC 19707]
 gi|207088714|gb|EDZ65986.1| exonuclease superfamily [Nitrosococcus oceani AFC27]
          Length = 205

 Score = 44.2 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 10/144 (6%)

Query: 9   KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            IV D ETTGL  +N    I+ +G   + +  +   + +    P  R  S EA  +HGIT
Sbjct: 16  YIVLDTETTGLPDENGLPDIVTLGITVVSNR-EIAESVEFKTRPQKR-ISEEAQSIHGIT 73

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++      SF S + +  ++   ++   + HNA FD   +   + R           I  
Sbjct: 74  NKQAAAFDSFDSQWQQISEYL--KHQLIVIHNASFDWPILLDHVLRHGLAMP----EIQG 127

Query: 127 LSIARRKHPSSRNDLNSLCKRYGI 150
           +  +++        ++  C   G 
Sbjct: 128 VFCSQKAAIPWAQAMDLPCSHRGP 151


>gi|328865534|gb|EGG13920.1| hypothetical protein DFA_11681 [Dictyostelium fasciculatum]
          Length = 383

 Score = 44.2 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 43/146 (29%), Gaps = 11/146 (7%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI---- 65
            FD ETTGL  S   +IIE+  + + D      +F   + P          K        
Sbjct: 83  FFDTETTGLATSTTSQIIELSLINIKD----GDSFYRKVNPTIPIEDGATKKHGMTNQSL 138

Query: 66  --TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                +   +P       ++           +AHN KFD   +   + +     L     
Sbjct: 139 AGHPYWEDVEPELIQFLDKYCVGDTPVEIIIVAHNEKFDRHILATRIVKNMVTTLPTLPE 198

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYG 149
           I  +         +R         +G
Sbjct: 199 IKFVDSINIFKHMARKGFIQTPAAFG 224


>gi|237747031|ref|ZP_04577511.1| oligoribonuclease [Oxalobacter formigenes HOxBLS]
 gi|229378382|gb|EEO28473.1| oligoribonuclease [Oxalobacter formigenes HOxBLS]
          Length = 218

 Score = 44.2 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 1  MIRK-NKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          M ++ N++  I  D+E TGLD + DRIIE+  V
Sbjct: 36 MKKRPNELNLIWVDLEMTGLDPETDRIIEVALV 68


>gi|157737104|ref|YP_001489787.1| DNA polymerase III subunit epsilon [Arcobacter butzleri RM4018]
 gi|157698958|gb|ABV67118.1| DNA polymerase III [Arcobacter butzleri RM4018]
          Length = 272

 Score = 44.2 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 9/196 (4%)

Query: 11  VFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             DIET G   K   +IIE+GAV+  +  +   +F   +    ++  P   ++  IT   
Sbjct: 85  FVDIETNGGTPKKGFQIIELGAVKYKNG-EVLDSFNSLV--FAKEIPPYIQEVTKITPAM 141

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+  P    +  +F +F  +    +IAH+ KFD  FI+   ++ +   L  +R + T+ +
Sbjct: 142 LETAPRIEKVLKDFKEFLGD--DVFIAHDIKFDYNFISDSFEKYSLGKL-LNRKLCTIDL 198

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           A+R   S +  L+SL +   I I   + H A  D+     V+ K +            + 
Sbjct: 199 AKRTIKSEKYGLSSLKELLNIDI--ENHHRAYYDALTTQIVFEKCLKNIDTNKIKTVEDL 256

Query: 190 DRFFKEEKKTVPNISL 205
             F K +      I  
Sbjct: 257 INFSKSDSIIKNEIKR 272


>gi|319426754|gb|ADV54828.1| Exonuclease RNase T and DNA polymerase III [Shewanella
          putrefaciens 200]
          Length = 223

 Score = 44.2 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSK 39
          D+E TGLD   D+I+ IG V +     
Sbjct: 41 DLEMTGLDPLQDQILSIGLVPIEHGVI 67


>gi|120598470|ref|YP_963044.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp.
          W3-18-1]
 gi|120558563|gb|ABM24490.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp.
          W3-18-1]
          Length = 223

 Score = 44.2 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSK 39
          D+E TGLD   D+I+ IG V +     
Sbjct: 41 DLEMTGLDPLQDQILSIGLVPIEHGVI 67


>gi|146293452|ref|YP_001183876.1| exonuclease, RNase T and DNA polymerase III [Shewanella
          putrefaciens CN-32]
 gi|145565142|gb|ABP76077.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
          putrefaciens CN-32]
          Length = 223

 Score = 44.2 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSK 39
          D+E TGLD   D+I+ IG V +     
Sbjct: 41 DLEMTGLDPLQDQILSIGLVPIEHGVI 67


>gi|213861675|ref|ZP_03386145.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 49

 Score = 44.2 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 194 KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           +++ +      + +  K      T EE+  H+  +  + K     +W 
Sbjct: 1   QQQGEATIQRIVRQASKLRVVFATDEEIAAHEARLDLVQKKGGSCLWR 48


>gi|324015053|gb|EGB84272.1| exonuclease [Escherichia coli MS 60-1]
          Length = 199

 Score = 44.2 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 19 MSANENNLIWIDLEMTGLDPERDRIIEIA 47


>gi|315637226|ref|ZP_07892446.1| exonuclease [Arcobacter butzleri JV22]
 gi|315478498|gb|EFU69211.1| exonuclease [Arcobacter butzleri JV22]
          Length = 247

 Score = 44.2 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 2/118 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD ETTG  ++ DR+I+ GA+ + +  K    F                  +   D 
Sbjct: 4   YVLFDTETTGA-AQEDRVIQFGAMIVDNKGKV-EAFDELCSAPIPIKLEAMEVHNITPDL 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                 +  + F +  +  N      IAHN  FD+  I  E    +   +D  R    
Sbjct: 62  LENKPKAVETNFYKRLEELNSDENYLIAHNINFDLDMIKKEGFENSYKLIDTLRCAKH 119


>gi|227487527|ref|ZP_03917843.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC
            51867]
 gi|227092509|gb|EEI27821.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC
            51867]
          Length = 2526

 Score = 44.2 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 8/170 (4%)

Query: 9    KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
              V +++T+G+  + DRIIEIG V      K   T+   + P   + S     +HGI++ 
Sbjct: 2129 FAVLNVKTSGIS-ERDRIIEIGIVLATLNGKVEGTYTTLINP---RRSFSDSAIHGISER 2184

Query: 69   FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 P F  +  +  +         IAH+A F    +  E  R N   +  +    T+S
Sbjct: 2185 MTVAAPVFEEVADDIAELL--DRRILIAHDAPFVSKQLGREFSRSNVKAIHLNDGYCTMS 2242

Query: 129  IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             + +   SS   L+S     G+   H     AL D+   +++   ++  G
Sbjct: 2243 HSPKLLGSSGRSLSSALDAAGLKNEHSHC--ALDDAMATANLLNVLLHKG 2290


>gi|301066020|ref|YP_003788043.1| DNA polymerase III subunit epsilon [Lactobacillus casei str. Zhang]
 gi|300438427|gb|ADK18193.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei str. Zhang]
          Length = 180

 Score = 44.2 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      +  V +        +F   + P  +    + + +HGIT
Sbjct: 1   MDFIAMDFET--ANRKRASACSLALVVVQQNKVV-DSFYTLINPQMQ-FDAQNIHIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            E ++D+P+F          F        AHNA FDV  + 
Sbjct: 57  PEMVQDQPTF-DQVWPHIQMFYTPGRIVTAHNAPFDVSVMR 96


>gi|116671305|ref|YP_832238.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24]
 gi|116611414|gb|ABK04138.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24]
          Length = 254

 Score = 44.2 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 65/205 (31%), Gaps = 5/205 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ETTG +S+  RI+      +          +    P G +   EA ++HG+T E  
Sbjct: 29  AFDLETTGRNSRAARIVTASVTVVDADGSVITEHEWLADP-GIEIPAEASEVHGVTTERA 87

Query: 71  KDKPSFSSIFSEF----WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           + +   ++  +           +     IA NA +D   + AE  R     L+   ++D 
Sbjct: 88  RLEGRPAAEVTRELASVLQGLFDDGIPVIAFNASYDFTVLAAESARYGIPQLNRFPVLDP 147

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
             + ++     +             ++  + H +  D+     +   M     ++     
Sbjct: 148 YIMNKQVDRFRKGKRTLTALCEEYKVNLDNAHTSAADALATLRMLDAMAGKFPKLRMAAG 207

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211
                          +     R   
Sbjct: 208 QLHQLQVGWAASQAADFQTYLRKTK 232


>gi|289705138|ref|ZP_06501542.1| exonuclease [Micrococcus luteus SK58]
 gi|289558166|gb|EFD51453.1| exonuclease [Micrococcus luteus SK58]
          Length = 228

 Score = 44.2 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 69/202 (34%), Gaps = 3/202 (1%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG D +   I+    V + ++ +   + +  + P     +  A      T+    
Sbjct: 11  FDLETTGRDPRTALIVTATLVMVDEHGRAASSAEWLVDPGVPIPAEAAEVHGVTTERAQA 70

Query: 72  DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +    +   +E  +   +        +A N  +D   ++ E +R    PL+   +ID   
Sbjct: 71  EGMPAAQGVAEITETLRDLFAAGIPVVAFNGVYDFTVMDREARRHGLTPLEARPVIDPFV 130

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           + ++     +             ++  + H +  D+     V   +     Q+       
Sbjct: 131 LDKQVDRFRKGKRTLSAVSEHYGVTLENAHTSAADALAAVQVADALAAQYEQLRMAPADL 190

Query: 189 EDRFFKEEKKTVPNISLLKRDK 210
            +R  + + +   +     R K
Sbjct: 191 HERQVRWKAEQAESFEQYLRRK 212


>gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 597

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 8  RKIVFDIETTGLDSKNDRI--IEIGA 31
          R I  D ETTGLD   +RI  I+I A
Sbjct: 35 RVIGIDTETTGLDPLTERIRLIQIAA 60


>gi|297622496|ref|YP_003703930.1| exonuclease RNase T and DNA polymerase III [Truepera radiovictrix
          DSM 17093]
 gi|297163676|gb|ADI13387.1| Exonuclease RNase T and DNA polymerase III [Truepera radiovictrix
          DSM 17093]
          Length = 224

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39
           +  D+ETTGL  + D  + +G V +   + 
Sbjct: 42 YVAVDLETTGLRPRWDAPLSVGWVLVRAGAI 72


>gi|256784395|ref|ZP_05522826.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289768274|ref|ZP_06527652.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289698473|gb|EFD65902.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
          Length = 244

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
          FD+ETTG D +  RI+    +E++      R  +    P 
Sbjct: 11 FDLETTGTDPREARIVTGAVIEVMGSEPLGRR-EWLADPG 49


>gi|212710150|ref|ZP_03318278.1| hypothetical protein PROVALCAL_01204 [Providencia alcalifaciens
          DSM 30120]
 gi|212687149|gb|EEB46677.1| hypothetical protein PROVALCAL_01204 [Providencia alcalifaciens
          DSM 30120]
          Length = 180

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          ++KN+   I  D+E TGLD   DRIIEI 
Sbjct: 1  MQKNENNLIWIDLEMTGLDPIRDRIIEIA 29


>gi|116494505|ref|YP_806239.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei ATCC 334]
 gi|227535524|ref|ZP_03965573.1| DNA-directed DNA polymerase III [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239631264|ref|ZP_04674295.1| DNA polymerase III alpha chain protein [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|116104655|gb|ABJ69797.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei ATCC 334]
 gi|227186846|gb|EEI66913.1| DNA-directed DNA polymerase III [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239525729|gb|EEQ64730.1| DNA polymerase III alpha chain protein [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 180

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 61/167 (36%), Gaps = 7/167 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      +  V +        +F   + P  +    + + +HGIT
Sbjct: 1   MDFIAMDFET--ANRKRASACSLALVVVQQNKVV-DSFYTLINPQMQ-FDAQNIHIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D+P+F          F        AHNA FDV  +   L R          I   
Sbjct: 57  PEMVQDQPTF-DQVWPHIQMFYTPGRIVTAHNAPFDVSVMRLTLDRYGIAAPRYQVIDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +  +       + L+++     I + H   H AL DS+  + + I 
Sbjct: 116 KTSRQFLPKLPNHRLDTVSAALHIPLEH--HHNALADSYACARILIA 160


>gi|157120016|ref|XP_001653489.1| oligoribonuclease, mitochondrial [Aedes aegypti]
 gi|108875103|gb|EAT39328.1| oligoribonuclease, mitochondrial [Aedes aegypti]
          Length = 210

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 9/151 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
            D+E TGL+ + DRI+EI  V       TN+  ++    P+   + PE +          
Sbjct: 39  IDLEMTGLEVEKDRILEIACV------ITNKNLEILERGPDIVIHEPEEVLNAMNEWCQT 92

Query: 71  KDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               +    ++     D    +                      I  D +   R +  L+
Sbjct: 93  NHSKTGLIQAVRESKIDLQKAEQMVLDFVKKYCPEKACPLAGNTIYMDRMFLYRYMPQLN 152

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
                     + +  LCKR+   +       
Sbjct: 153 EYLHYRIIDVSTVKELCKRWNGAVFSNCPPK 183


>gi|167522769|ref|XP_001745722.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776071|gb|EDQ89693.1| predicted protein [Monosiga brevicollis MX1]
          Length = 320

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 50/153 (32%), Gaps = 5/153 (3%)

Query: 11  VFDIETTG---LDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKN-SPEALKLHGI 65
           V D E T           IIEI A+ L     +   TFQ ++ P      S     L GI
Sbjct: 103 VMDFEATCEEERSPFPHEIIEIPAILLDAKSGELLDTFQTYVRPKLNPQLSKFCTNLTGI 162

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + +     F   + +F DF  +   ++ A +   DV  + A     +       +   
Sbjct: 163 TQDQVDAAKLFPEAWQDFEDFLGKAVQKFKASHDVDDVRVLCASDGPWDFRDFLAFQCQL 222

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
           +            +    L K + +  +   + 
Sbjct: 223 SQMDYPAVCQQWMDVRKRLTKHFKLKWAGPERA 255


>gi|330983214|gb|EGH81317.1| ribonuclease T [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 171

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34
          +V D+ET G +S  D ++EI AV +
Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTI 57


>gi|330937561|gb|EGH41501.1| ribonuclease T [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 163

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34
          +V D+ET G +S  D ++EI AV +
Sbjct: 32 VVVDVETGGFNSATDALLEIAAVTI 56


>gi|330898573|gb|EGH29992.1| ribonuclease T [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 186

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34
          +V D+ET G +S  D ++EI AV +
Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTI 57


>gi|325275194|ref|ZP_08141161.1| ribonuclease T [Pseudomonas sp. TJI-51]
 gi|324099681|gb|EGB97560.1| ribonuclease T [Pseudomonas sp. TJI-51]
          Length = 224

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34
          +V D+ET G +S  D ++EI AV +
Sbjct: 32 VVVDVETGGFNSATDALLEIAAVTI 56


>gi|227499152|ref|ZP_03929287.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904599|gb|EEH90517.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 228

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 61/174 (35%), Gaps = 6/174 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+E  G     D IIEI A+++    +    F+  + P   K S    ++ GIT + 
Sbjct: 56  VVFDLELAG--YAEDDIIEIAAIKVDFLGRQTAVFRELIRP-RTKISKRVTEMTGITRDM 112

Query: 70  LKDKPSFSSIFSEFWDFFN--EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +KDKP    +   F+ F          I +N    +             P         L
Sbjct: 113 VKDKPQLPEVLKRFFAFVEGSAVMGHDIGYNDIMAINLACRRYGMKAFRPPFLDTSRLIL 172

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL-DSHLLSDVYIKMMVGGSQ 180
               R+    +  L +L   + I I    +  A    + LL +   K +     
Sbjct: 173 RHLSREAVGGKTGLAALLAHFNIPIHRHHEALADCEATLLLYEAVAKEIRKQKS 226


>gi|167035320|ref|YP_001670551.1| ribonuclease T [Pseudomonas putida GB-1]
 gi|166861808|gb|ABZ00216.1| ribonuclease T [Pseudomonas putida GB-1]
          Length = 224

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34
          +V D+ET G +S  D ++EI AV +
Sbjct: 32 VVVDVETGGFNSATDALLEIAAVTI 56


>gi|170720300|ref|YP_001747988.1| ribonuclease T [Pseudomonas putida W619]
 gi|169758303|gb|ACA71619.1| ribonuclease T [Pseudomonas putida W619]
          Length = 224

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34
          +V D+ET G +S  D ++EI AV +
Sbjct: 32 VVVDVETGGFNSATDALLEIAAVTI 56


>gi|104780415|ref|YP_606913.1| ribonuclease T [Pseudomonas entomophila L48]
 gi|166200016|sp|Q1IE06|RNT_PSEE4 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
          Short=RNase T
 gi|95109402|emb|CAK14102.1| ribonuclease T [Pseudomonas entomophila L48]
          Length = 224

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34
          +V D+ET G +S  D ++EI AV +
Sbjct: 32 VVVDVETGGFNSATDALLEIAAVTI 56


>gi|158317483|ref|YP_001509991.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec]
 gi|158112888|gb|ABW15085.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec]
          Length = 237

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 5/43 (11%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPN 51
          V D ETTG D + DR +++  +++     T         + P 
Sbjct: 10 VLDFETTGTDVETDRAVQVALLKV---GPTGVLNQLCQIIDPG 49


>gi|317493562|ref|ZP_07951983.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918505|gb|EFV39843.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 181

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+ + DRIIEI 
Sbjct: 11 IDLEMTGLNPEVDRIIEIA 29


>gi|296137636|ref|YP_003644877.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia
           K12]
 gi|295797758|gb|ADG32547.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia
           K12]
          Length = 179

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 11  VFDIETT-----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           V D+E T     GL + +  IIEIGAV          TFQ  + P  R   +P   +L  
Sbjct: 7   VIDLEATCDDADGLPASDMEIIEIGAVWATVEGSVLDTFQALVRPVVRPQLTPFCRQLTN 66

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK 100
           I    +     F ++ +    F     A      + 
Sbjct: 67  IQQADVDGAELFPAVAARLASFAQRHQAPGATWGSW 102


>gi|167957555|ref|ZP_02544629.1| oligoribonuclease [candidate division TM7 single-cell isolate
          TM7c]
          Length = 182

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           D+E TGLD   D+I+E+ A+    D+++  R F+  +  +    S      H   
Sbjct: 9  VDLEMTGLDPTKDKILEVAAIATDWDFNEVGR-FESAVKVDDSLISARFKAGHNFW 63


>gi|170722729|ref|YP_001750417.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           W619]
 gi|169760732|gb|ACA74048.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           W619]
          Length = 181

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 50/171 (29%), Gaps = 8/171 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR----KNSPEAL 60
            +V D+E TT   G       IIEIGA  +    +    FQ F+ P  R        E  
Sbjct: 4   WLVIDLEATTDDGGWPVTEMEIIEIGASLVTREGREVDHFQRFVRPRRRPQLTPFCRELT 63

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +     +     P   + F  +      Q   W++         +    Q      L  
Sbjct: 64  HISQANVDSAAPFPEVWARFERWLGHHRGQLQAWVSWGDYDRQQLLQEWQQHELDSLLRN 123

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              I+      +     R    +   +         +H AL D+   + + 
Sbjct: 124 LPHINLKQRFAKARHLQRPTGLNGALQLAGMHFCGQQHRALEDARNTARLL 174


>gi|91079959|ref|XP_969470.1| PREDICTED: similar to three prime repair exonuclease 1 [Tribolium
           castaneum]
 gi|270003252|gb|EEZ99699.1| hypothetical protein TcasGA2_TC002459 [Tribolium castaneum]
          Length = 319

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 24/97 (24%), Gaps = 10/97 (10%)

Query: 9   KIVFDIETTGLDSKND---RIIEIGAVELL-DYSKTN------RTFQVFLCPNGRKNSPE 58
            +  D+ETTGL        RI E+ AV +  D+ +            +   P    +   
Sbjct: 34  FVFLDLETTGLPHLEHNKTRITELCAVSVRADHIELGCFPRVQNKLSLCFNPMKMISPEA 93

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI 95
                   D         S        +         
Sbjct: 94  TSLTGLSNDLLEYQASFSSDAVDVIRKWLEMNQKPIC 130


>gi|167461432|ref|ZP_02326521.1| hypothetical protein Plarl_02538 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 119

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++ D ETTG++  +  I++I  ++L         F   + P       EA  +HGIT+
Sbjct: 33  KYLILDTETTGIEYDS-EIVDIAIIDLDKNLI----FASLVKP-ICPIPEEATMIHGITN 86

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
           E + D PS+  ++++     + +      
Sbjct: 87  EMVADAPSWLEVWAQVQKLLSGKTLLIYN 115


>gi|157737501|ref|YP_001490184.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|157699355|gb|ABV67515.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
          Length = 247

 Score = 44.2 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 2/118 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD ETTG  ++ DR+I+ GA+ + +  K    F                  +   D 
Sbjct: 4   YVLFDTETTGA-AQEDRVIQFGAMIVDNKGKV-EAFDELCSAPIPIKLEAMEVHNITPDL 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                 +  + F +  +  N      IAHN  FD+  I  E    +   +D  R    
Sbjct: 62  LENKPKAVETNFYKRLEELNSDENYLIAHNINFDLDMIKKEGFENSYKLIDTLRCAKH 119


>gi|283955874|ref|ZP_06373364.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792534|gb|EFC31313.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 253

 Score = 44.2 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           + DIE+TG       I+EIGAV++ +  +  R FQ F+ 
Sbjct: 74  IVDIESTGG-VSKGEILEIGAVKIQNSKEIGR-FQSFVK 110


>gi|257454146|ref|ZP_05619419.1| DNA polymerase III subunit epsilon [Enhydrobacter aerosaccus SK60]
 gi|257448474|gb|EEV23444.1| DNA polymerase III subunit epsilon [Enhydrobacter aerosaccus SK60]
          Length = 215

 Score = 44.2 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 60/173 (34%), Gaps = 6/173 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTN-RTFQVFLCPNGRKNSPEALKLHG 64
            +  D+E TGL++K D I+ +GAV++    +    +  +    +C      + + + +HG
Sbjct: 41  WVSLDLEMTGLNAKQDYILSVGAVQVRKESNGFVIDTDSALSLVCRPPVMPTHDTIVIHG 100

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRI 123
           +    + +  S+  + ++       +       +        I      +          
Sbjct: 101 LRPIDVDNGLSYDEMLTQLLPMLKNRPIIGFCVDMDMAFLNAIAKPFLGVELANKLVDVS 160

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKMM 175
                   R  PS    L  L +        R   H AL D+ + + ++  +M
Sbjct: 161 RLYQQNQHRHDPSQVGQLPHLNQLLEEYQIPRLPAHNALNDAIMTAMLFTHLM 213


>gi|257095291|ref|YP_003168932.1| Exonuclease RNase T and DNA polymerase III [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047815|gb|ACV37003.1| Exonuclease RNase T and DNA polymerase III [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 236

 Score = 44.2 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 5/41 (12%)

Query: 8  RKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKT-NRTFQ 45
          R +V D+ETT  G D+  DR++ +GA+ ++D        FQ
Sbjct: 45 RYVVVDVETTVIGGDA--DRLVSLGALAVVDGLIDFKDVFQ 83


>gi|319786534|ref|YP_004146009.1| ribonuclease T [Pseudoxanthomonas suwonensis 11-1]
 gi|317465046|gb|ADV26778.1| ribonuclease T [Pseudoxanthomonas suwonensis 11-1]
          Length = 219

 Score = 44.2 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 57/185 (30%), Gaps = 13/185 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRT--FQVFLCPNGRKNSPEALKLH 63
           +V D+ET G D     ++E+ AV +           +T        P    +        
Sbjct: 32  VVVDVETGGFDWNRHALLEMAAVPIEMDEQGLLVPGKTAAAHFIPAPGTEIDPKSLEVTG 91

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAELQRINKD 116
            + D   +            ++           Q A  + HNA FD+ F+NA + R    
Sbjct: 92  IVLDHPFRLAKPERDALGHVFNQVRAAVRRNGCQRAILVGHNAHFDLNFVNAAVARSGHK 151

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      ++        +  L    +  G+    R  H A+ D+   + ++ ++  
Sbjct: 152 RNPFHPFSVFDTVTLGGIAYGQTVLARALQAAGLEWDAREAHSAVYDAEQTAKLFCRIAN 211

Query: 177 GGSQI 181
                
Sbjct: 212 AWPSP 216


>gi|270676235|ref|ZP_06222692.1| ribonuclease T [Haemophilus influenzae HK1212]
 gi|270316426|gb|EFA28313.1| ribonuclease T [Haemophilus influenzae HK1212]
          Length = 164

 Score = 44.2 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
          ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   +PE+LK +G
Sbjct: 11 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 70

Query: 65 ITDEFL 70
          I     
Sbjct: 71 IDIHNP 76


>gi|125547686|gb|EAY93508.1| hypothetical protein OsI_15303 [Oryza sativa Indica Group]
          Length = 214

 Score = 44.2 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSK 39
            D+E TGLD   DRI+EI  +      +
Sbjct: 74  IDLEMTGLDITKDRILEIACIITDGLKE 101


>gi|260577353|ref|ZP_05845324.1| Exodeoxyribonuclease I [Rhodobacter sp. SW2]
 gi|259020426|gb|EEW23751.1| Exodeoxyribonuclease I [Rhodobacter sp. SW2]
          Length = 457

 Score = 43.8 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 42/157 (26%), Gaps = 8/157 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR--TFQVFLCPNGRKNSP--EALKL 62
           M  + +D+ETTG+    D+ ++  A+   D          +  + P+   +        +
Sbjct: 1   MGFVFYDLETTGISPAFDQPLQFAAIRTDDSLVEIERVNLRCRIAPHIIPSPQALFVTGV 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                   +    F    +          A W+  N       +  +    N  P   + 
Sbjct: 61  TPAQLVDPELPSLFEFTQTIMELTERWAPATWVGFNTIRFDEEVLRQAFYQNLQPNIYAT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
            ++  +                C+  G+         
Sbjct: 121 QLNGNNRLDILTAVYAV----WCRNRGLMHWPTDDTD 153


>gi|301603560|ref|XP_002931486.1| PREDICTED: ERI1 exoribonuclease 3 [Xenopus (Silurana) tropicalis]
          Length = 338

 Score = 43.8 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 38/162 (23%), Gaps = 6/162 (3%)

Query: 9   KIVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            +V D E T    +     IIE   ++L     +   TF  ++ P      P+       
Sbjct: 130 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHTYVQP---VVHPQLTPFCTE 186

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
               ++D        S+  +  +E  A+    +      F+      +          + 
Sbjct: 187 LTGIIQDMVDGQPTLSQVLERVDEWMAKEGLLDPSVKSIFVTCGDWDLKLMLPGQCEYLG 246

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                  K   +     +                        
Sbjct: 247 LQVADYFKQWINLKKDVNPSTSSKPPQMEDPFDWKKTTIQST 288


>gi|291517508|emb|CBK71124.1| Oligoribonuclease (3'->5' exoribonuclease) [Bifidobacterium longum
           subsp. longum F8]
          Length = 214

 Score = 43.8 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 3/132 (2%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D ETTGLD     ++E+G       ++T   +  + + P+  +N   A     +    +
Sbjct: 29  IDTETTGLDPNQCELLEVGMQVTDLKAETRGDSLHLIVHPDNVRN--WANHPEMLKAYEM 86

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                     +E      +     +  +   +       L     +     R +D     
Sbjct: 87  HLANGLMLACAEAPKTGYDYKHTALNIHEFLNDQLSQYTLHPAGTNVDFDLRQLDVHLSR 146

Query: 131 RRKHPSSRNDLN 142
             +HP ++   +
Sbjct: 147 HLEHPITQGLHH 158


>gi|191637943|ref|YP_001987109.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           casei BL23]
 gi|190712245|emb|CAQ66251.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           casei BL23]
 gi|327382013|gb|AEA53489.1| hypothetical protein LC2W_1155 [Lactobacillus casei LC2W]
 gi|327385171|gb|AEA56645.1| hypothetical protein LCBD_1147 [Lactobacillus casei BD-II]
          Length = 180

 Score = 43.8 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 61/167 (36%), Gaps = 7/167 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      +  V +        +F   + P  +    + + +HGIT
Sbjct: 1   MDFIAMDFET--ANRKRASACSLALVVVQQNKVV-DSFYTLINPQMQ-FDAQNIHIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D+P+F          F        AHNA FDV  +   L R          I   
Sbjct: 57  PEMVQDQPTF-DRVWPHIQMFYTPGRIVTAHNAPFDVSVMRLTLDRYGIAAPRYQVIDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +  +       + L+++     I + H   H AL DS+  + + I 
Sbjct: 116 KTSRQFLPKLPNHRLDTVSAALHIPLEH--HHNALADSYACARILIA 160


>gi|184154853|ref|YP_001843193.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260663117|ref|ZP_05864009.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|183226197|dbj|BAG26713.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260552309|gb|EEX25360.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 179

 Score = 43.8 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 64/177 (36%), Gaps = 7/177 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET    +K      +    + +       F   + P          ++HGI 
Sbjct: 1   MNFIAMDFET--ASAKRFSACSLAITIVRNSQ-IQDEFYTLINPQTPFF-WRNTQVHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +KD P+F  ++    +F    +   IAHNA FD   +   L     +P     +   
Sbjct: 57  ERDVKDAPTFPEVWEHIQEF-FTPDKLVIAHNATFDNSVLKNTLLHFEIEPPVYQTLDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            +  +       + LN++C +  I + H   H AL D+H  +++ +           
Sbjct: 116 KTSRQLFPAFPNHKLNTICDQLNIDLHH--HHNALDDAHACANILLYQANHFGTAPL 170


>gi|209963909|ref|YP_002296824.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
 gi|209957375|gb|ACI98011.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
          Length = 212

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 5/156 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D ET   + +      IG   + +     RT +  + P   + +P  + +HGI  E +
Sbjct: 9   AIDFET--ANEQRASACSIGLCRVENGRVV-RTAEYLIRPPELRFTPFTIAIHGIRPEDV 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P F  I+           A  +AHNA FD+  + A L        D   +   ++  
Sbjct: 66  VDAPEFPDIWDAMRPELEG--AVLLAHNASFDMSVLRAMLGTYGLAVPDHGYLCTLVAAR 123

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           R      ++ LN L +++GI + H            
Sbjct: 124 RAWPDLEKHRLNHLARQFGIELEHHRAGSDARACAA 159


>gi|220934199|ref|YP_002513098.1| exonuclease [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995509|gb|ACL72111.1| exonuclease [Thioalkalivibrio sp. HL-EbGR7]
          Length = 236

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39
          R +V D+ETTGLD     ++ +G V +  +  
Sbjct: 41 RFVVIDVETTGLDLSRSELLSVGLVPVGPHGI 72


>gi|241662497|ref|YP_002980857.1| oligoribonuclease [Ralstonia pickettii 12D]
 gi|309781079|ref|ZP_07675817.1| oligoribonuclease [Ralstonia sp. 5_7_47FAA]
 gi|240864524|gb|ACS62185.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
          12D]
 gi|308920145|gb|EFP65804.1| oligoribonuclease [Ralstonia sp. 5_7_47FAA]
          Length = 215

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL  +NDRIIE+  V
Sbjct: 29 LDMEMTGLSPENDRIIEVAVV 49


>gi|300692079|ref|YP_003753074.1| oligoribonuclease [Ralstonia solanacearum PSI07]
 gi|299079139|emb|CBJ51807.1| oligoribonuclease [Ralstonia solanacearum PSI07]
          Length = 219

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL  +NDRIIE+  V
Sbjct: 33 LDMEMTGLSPENDRIIEVAVV 53


>gi|218296944|ref|ZP_03497630.1| ATP-dependent DNA helicase, RecQ family [Thermus aquaticus
          Y51MC23]
 gi|218242647|gb|EED09183.1| ATP-dependent DNA helicase, RecQ family [Thermus aquaticus
          Y51MC23]
          Length = 1684

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 8/70 (11%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGI 65
           +  D+E T  D +   I+E+ A          RTF  +L    P  + +    +     
Sbjct: 7  FVALDLEATSPDPEEAEILELAA-----QDSQGRTFHRYLATNKPLSKDHEAFRITQIPF 61

Query: 66 TDEFLKDKPS 75
           +   +  P 
Sbjct: 62 EEYEREKVPP 71


>gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51]
 gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 578

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
          M +    + I  D ETTGLD      R+I++ A +L         F     P GR+
Sbjct: 16 MEKLTAAKVIAVDTETTGLDPHTCQLRLIQLAAEDLP--VLVIDCFSFL--PEGRE 67


>gi|17545661|ref|NP_519063.1| oligoribonuclease [Ralstonia solanacearum GMI1000]
 gi|21263804|sp|Q8Y0V1|ORN_RALSO RecName: Full=Oligoribonuclease
 gi|17427954|emb|CAD14644.1| probable oligoribonuclease protein [Ralstonia solanacearum
          GMI1000]
          Length = 219

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL  +NDRIIE+  V
Sbjct: 33 LDMEMTGLSPENDRIIEVAMV 53


>gi|255505894|ref|ZP_05348724.3| exonuclease family protein [Bryantella formatexigens DSM 14469]
 gi|255265267|gb|EET58472.1| exonuclease family protein [Bryantella formatexigens DSM 14469]
          Length = 318

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 19/108 (17%)

Query: 2   IRKNKMRKIVFDIETTGLDSKND-------------RIIEIGAVELLDYSKTNRTFQVFL 48
           +    M  IVFD+E                       I+EIGA++L         F  ++
Sbjct: 1   MYNKLMNYIVFDLE-----WNQCPDGKEHEMRELPFEILEIGAIKLNSEKIETDRFHEYI 55

Query: 49  CPNGR-KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI 95
            P    +   +  ++  I  E L++   F ++   F ++         
Sbjct: 56  RPTVYTRMHNKTQEIVHIRQEVLENADFFPAVLERFREWCGPDAHYCT 103


>gi|307945043|ref|ZP_07660379.1| exonuclease RNase T and DNA polymerase III [Roseibium sp.
           TrichSKD4]
 gi|307770916|gb|EFO30141.1| exonuclease RNase T and DNA polymerase III [Roseibium sp.
           TrichSKD4]
          Length = 231

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 56/171 (32%), Gaps = 10/171 (5%)

Query: 7   MRKIVFDIETTGLDSKNDR-IIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+  V D ETTGL S   + I E    +L              + P G    PE + +H 
Sbjct: 1   MKFRVIDFETTGLPSDTRKAICEAAFCDLDAETDIIADPVSTLVDP-GHSIPPETMAVHH 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I D+ +   PS +            +   ++AHN +F+  F      R         R+ 
Sbjct: 60  IRDQDVAGCPSPTEACRMLMGG-MGEEDVFVAHNIEFEKFFFGGGDHRWICTLKCAVRLW 118

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 + +       L  L             H A  D+ + + +   M+
Sbjct: 119 PDAPSHKNQVLRYWKGLTDL------GDLALPAHRAGPDTFVTAHLLRLML 163


>gi|66968596|ref|YP_245473.1| putative transposase [Pseudomonas aeruginosa]
 gi|66862678|emb|CAI46979.1| putative transposase [Pseudomonas aeruginosa]
 gi|112553494|gb|ABI20463.1| transposase [uncultured bacterium]
          Length = 275

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 45/137 (32%), Gaps = 12/137 (8%)

Query: 10  IVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           IV D ETTGL    D   I EI  +++             + P  R    EA  +H ITD
Sbjct: 87  IVLDTETTGL---GDDAEICEITILDVTG----APILDTLVRP-TRPIPVEATAIHKITD 138

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   PS+  +  ++      +     A+N  FD   +    Q         +     L
Sbjct: 139 AMVASAPSWPEVAEQYAAAVAGRTVV--AYNVAFDARLLRQTYQIHGITAPVLTTACAML 196

Query: 128 SIARRKHPSSRNDLNSL 144
             A       R+     
Sbjct: 197 MYAEWHGEYDRSRDRWR 213


>gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
 gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
          Length = 583

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
          M +    + I  D ETTGLD      R+I++ A +L         F     P GR+
Sbjct: 21 MEKLTAAKVIAVDTETTGLDPHTCQLRLIQLAAEDLP--VLVIDCFSFL--PEGRE 72


>gi|284925719|gb|ADC28071.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 256

 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           + DIE+TG       I+EIGAV++ +  +  R FQ F+ 
Sbjct: 74  IVDIESTGG-VSKGEILEIGAVKIQNSKEIGR-FQSFVK 110


>gi|86149218|ref|ZP_01067450.1| DNA polymerase III PolC-type [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88596976|ref|ZP_01100212.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562107|ref|YP_002343886.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85840576|gb|EAQ57833.1| DNA polymerase III PolC-type [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190665|gb|EAQ94638.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359813|emb|CAL34600.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|315928220|gb|EFV07537.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315930011|gb|EFV09154.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni 305]
          Length = 253

 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           + DIE+TG       I+EIGAV++ +  +  R FQ F+ 
Sbjct: 74  IVDIESTGG-VSKGEILEIGAVKIQNSKEIGR-FQSFVK 110


>gi|313106840|ref|ZP_07793049.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 39016]
 gi|310879551|gb|EFQ38145.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 39016]
          Length = 478

 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 46/172 (26%), Gaps = 8/172 (4%)

Query: 7   MRKIVF--DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLH 63
           M   +F  D ETTG+D + DR ++I  +   +  ++      ++  P+          L 
Sbjct: 1   MNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLI 60

Query: 64  GITDEFLKDKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
                    +   S             +       +N+   + F +   +          
Sbjct: 61  TGITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNS---LRFDDEVTRYSLYRNFFDP 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              +      R             +  GI         +L    L +   ++
Sbjct: 118 YAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLE 169


>gi|297623751|ref|YP_003705185.1| exonuclease RNase T and DNA polymerase III [Truepera radiovictrix
           DSM 17093]
 gi|297164931|gb|ADI14642.1| Exonuclease RNase T and DNA polymerase III [Truepera radiovictrix
           DSM 17093]
          Length = 177

 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 8/119 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ETTGL  K+  +IE+  +               + P   + +P A ++H IT   L
Sbjct: 15  ILDTETTGL--KSAEVIELALLSTRGEVL----LDTLVRPKVMRLNPYAARVHRITLAEL 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            D+P++  +  E       + A  +A NA FD   + A                     
Sbjct: 69  ADRPTWPEVLPELRR--LAERATVLAWNAPFDARMLEATSAAWGLPHPRLLFACAMRLY 125


>gi|115373916|ref|ZP_01461207.1| oligoribonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|310817902|ref|YP_003950260.1| oligoribonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|115369044|gb|EAU67988.1| oligoribonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|309390974|gb|ADO68433.1| Oligoribonuclease [Stigmatella aurantiaca DW4/3-1]
          Length = 186

 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD +   IIEIG +
Sbjct: 11 LDLEMTGLDPETCAIIEIGVI 31


>gi|116206844|ref|XP_001229231.1| hypothetical protein CHGG_02715 [Chaetomium globosum CBS 148.51]
 gi|88183312|gb|EAQ90780.1| hypothetical protein CHGG_02715 [Chaetomium globosum CBS 148.51]
          Length = 228

 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK 39
           D E TGLD + D IIEI  + + D   
Sbjct: 22 IDCEMTGLDPETDAIIEIYCI-ITDGQL 48


>gi|323141646|ref|ZP_08076527.1| exonuclease [Phascolarctobacterium sp. YIT 12067]
 gi|322413861|gb|EFY04699.1| exonuclease [Phascolarctobacterium sp. YIT 12067]
          Length = 216

 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 68/209 (32%), Gaps = 15/209 (7%)

Query: 8   RKIVFDIE-TT---------GLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNS 56
           + +V D E TT         G  S+   IIEIGAV+L     T+    Q F+ P+     
Sbjct: 3   KFLVVDFEFTTYERPVGRPRGFFSE---IIEIGAVKLDGEPLTDCGRIQSFVKPHFYPKQ 59

Query: 57  PE-ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            + ++    IT + ++    F ++  E    +      ++A   +          +   +
Sbjct: 60  AKDSMDFCMITAKDMQQAIEFPAMVQELAALYESGETYFVAWGTEDYKVLQTGCERHKIE 119

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +P+     +D     R                     +    H A  D++    + I+M 
Sbjct: 120 NPVKYEDYLDLALAYRLWKGDDYTTGLKKATEEQEVNTAGLWHTAFDDANNTGKLLIEMF 179

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNIS 204
             G ++   F   E    +   +      
Sbjct: 180 NRGWKLEDFFVAREAYEAERAARQAERAK 208


>gi|294339527|emb|CAZ87886.1| oligoribonuclease [Thiomonas sp. 3As]
          Length = 203

 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+   DRIIE+  V
Sbjct: 22 VDMEMTGLNPDTDRIIEVAVV 42


>gi|261888732|ref|YP_003264421.1| hypothetical protein pSLTBT_p060 [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|305696883|ref|YP_003864198.1| hypothetical protein pYT1_p055 [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|261857320|emb|CBA11393.1| hypothetical protein SLT-BT0592 [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|304376185|dbj|BAJ15347.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|312915768|dbj|BAJ39741.1| YacC [Salmonella enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|327536789|gb|AEA95620.1| hypothetical protein pSD853_77_39 [Salmonella enterica subsp.
           enterica serovar Dublin]
          Length = 169

 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           +  D ETTGLD+   + +EIG V         R F+  L P    +  
Sbjct: 106 VFLDTETTGLDA-GAQALEIGLVNARG----ERIFETRLKPTVGIDPA 148


>gi|224504290|ref|YP_002635630.1| hypothetical protein SPC_p058 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224470999|gb|ACN48828.1| hypothetical protein SPC_p058 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 169

 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           +  D ETTGLD+   + +EIG V         R F+  L P    +  
Sbjct: 106 VFLDTETTGLDA-GAQALEIGLVNARG----ERIFETRLKPTVGIDPA 148


>gi|161867921|ref|YP_001598102.1| YacC [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|161087300|gb|ABX56770.1| YacC [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|323133004|gb|ADX20433.1| YacC protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|326626290|gb|EGE32634.1| YacC protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 172

 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           +  D ETTGLD+   + +EIG V         R F+  L P    +  
Sbjct: 109 VFLDTETTGLDA-GAQALEIGLVNARG----ERIFETRLKPTVGIDPA 151


>gi|12084972|ref|NP_073265.1| hypothetical protein pKDSC50_p41 [Salmonella enterica subsp.
           enterica serovar Choleraesuis]
 gi|60115507|ref|YP_209299.1| hypothetical protein SCV45 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|586926|sp|P37414|YTL1_SALTY RecName: Full=Uncharacterized protein pSLT049
 gi|444032|emb|CAA82633.1| 15 kDa protein similar to coliphage 186 CP81 [Salmonella enterica
           subsp. enterica serovar Typhimurium]
 gi|12060342|dbj|BAB20548.1| orf41 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|16445245|gb|AAL23463.1| putative DNA polymerase III epsilon subunit (3'-5' exonuclease)
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|45359331|gb|AAS58918.1| hypothetical protein pSLT049 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|267990085|gb|ACY86482.1| putative DNA polymerase III epsilon subunit (3'-5' exonuclease)
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|322713012|gb|EFZ04584.1| hypothetical protein SCA50_p44 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|332991504|gb|AEF10486.1| putative DNA polymerase III epsilon subunit (3'-5' exonuclease)
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 138

 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           +  D ETTGLD+   + +EIG V         R F+  L P    +  
Sbjct: 75  VFLDTETTGLDA-GAQALEIGLVNARG----ERIFETRLKPTVGIDPA 117


>gi|255524855|ref|ZP_05391804.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|255511425|gb|EET87716.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
          Length = 306

 Score = 43.8 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 5/150 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET   + + +    IG   + +     +     + P   +  P  + +HGI 
Sbjct: 1   MNFTAIDFET--ANERRNSPCSIGIAVVKNGHVVEKI-HHLIRPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++++P F  ++ +   +F+      IAHNA FD+  +    +  + D      I   
Sbjct: 58  PAVVENEPEFDKVWEKIKHYFDG--NLVIAHNASFDISVLRKTAELYDIDLPKFKYICTM 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156
                         LN++    G    H  
Sbjct: 116 KLSKNFYRGIENAKLNTVNDFLGYEFKHHD 145


>gi|78186412|ref|YP_374455.1| exonuclease [Chlorobium luteolum DSM 273]
 gi|78166314|gb|ABB23412.1| Exonuclease [Chlorobium luteolum DSM 273]
          Length = 197

 Score = 43.8 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 71/196 (36%), Gaps = 23/196 (11%)

Query: 7   MRKIV-FDIETTGLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+K++ FD+ETTG+D     II+  G  E+        +F++ + P+      +      
Sbjct: 1   MKKVLWFDLETTGIDPDRHGIIQFAGLAEIEG--VVAESFEIKMQPHEGAMIEDEALAVS 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQN---------AEWIAHNAKFDVGFINAELQRINK 115
                     +  +   +  D F  ++              +N +FD+ F++   +R ++
Sbjct: 59  GFSREQIASFTPHAEAYKAIDGFLARHVSRFERNDKFYPAGYNVRFDLDFLSRMFRRYDQ 118

Query: 116 DPLDPSRIIDTLSIARRKHPSSR--------NDLNSLCKRYGITISHRSKHGALLDSHLL 167
             L       +L      +            + L ++C+  G+     + H AL D    
Sbjct: 119 YGLGSFINWRSLDPQPILNIMEYMGRLSLPNHKLQTVCEHLGVR--LENAHDALSDIKAT 176

Query: 168 SDVYIKMMVGGSQINF 183
            ++   +M   S   F
Sbjct: 177 RELMELLMEHVSIAPF 192


>gi|319760221|ref|YP_004124159.1| oligoribonuclease [Candidatus Blochmannia vafer str. BVAF]
 gi|318038935|gb|ADV33485.1| oligoribonuclease [Candidatus Blochmannia vafer str. BVAF]
          Length = 182

 Score = 43.8 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+ + DRIIEI 
Sbjct: 8  IDLEMTGLNPEKDRIIEIA 26


>gi|312898045|ref|ZP_07757451.1| DNA polymerase III subunit epsilon domain protein [Megasphaera
           micronuciformis F0359]
 gi|310620870|gb|EFQ04424.1| DNA polymerase III subunit epsilon domain protein [Megasphaera
           micronuciformis F0359]
          Length = 184

 Score = 43.8 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 5/166 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D ET   +   D    + AV +   S  +  +   + P   +   + +++HGIT + +
Sbjct: 6   AIDFET--ANRYADSACSLAAVSIAGQSVMHEGY-TLIKPPFNRFDEDNIRIHGITPQMV 62

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             KP+F +++ +     N+     IAH A FD   + + ++R N   L+ S         
Sbjct: 63  SAKPTFDALWPDIRKRLNK--RILIAHYAVFDTRVLRSLIKRYNLPGLNASYACTVEISR 120

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +       + L+++    G T  H            +     +   
Sbjct: 121 KVWPDLPNHKLDTVAGHLGFTFRHHQALDDARACARIVCAAAERTG 166


>gi|289665345|ref|ZP_06486926.1| putative PAS/PAC sensor protein [Xanthomonas campestris pv.
          vasculorum NCPPB702]
          Length = 196

 Score = 43.8 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34
          +V D ETTG+D     I+ +G V +
Sbjct: 10 VVVDTETTGVDPFVHDILSVGLVSM 34


>gi|327194608|gb|EGE61458.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli
           CNPAF512]
          Length = 224

 Score = 43.8 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 5/155 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           IR   ++ I  D ET   + +      +G   + +   T R  +  + P   + S   + 
Sbjct: 24  IRYAALKTIAIDFET--ANEQRGSACSVGLAWIDEGRVT-RVEERLIRPRDMRFSGMNIA 80

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI  E ++D P F  +  EF +  +       AHNA FD     A L    +   + +
Sbjct: 81  IHGIRPEHVEDAPEFPEVMDEFHEDISGATMI--AHNAAFDFSVWRASLDLYRQSYPELT 138

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
            +       R       + LN + +  G+   H +
Sbjct: 139 YLCSLKMAQRIWPHFLSHRLNLIAEHLGLRFMHHN 173


>gi|296135421|ref|YP_003642663.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia
          K12]
 gi|295795543|gb|ADG30333.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia
          K12]
          Length = 203

 Score = 43.8 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+   DRIIE+  V
Sbjct: 22 VDMEMTGLNPDTDRIIEVAVV 42


>gi|115650166|ref|XP_781221.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 210

 Score = 43.8 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 6/129 (4%)

Query: 9   KIVFDIETTGLDSKN---DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
            +V D E T LD++      +IE   +++   + +T  TF  ++ P          +L G
Sbjct: 79  FLVLDFEATCLDNERIEPQEVIEFPVLKVSGKTFETEATFHQYVEPQVHGVGEFCTRLTG 138

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT + +K +P+F+     F      +    +    KF          +           +
Sbjct: 139 ITPDMVKGQPTFADTLKLF--HVWMEKEGLVDPEVKFIFVTCGDWDLKTMFPSQCAHFEL 196

Query: 125 DTLSIARRK 133
              S  RR 
Sbjct: 197 PYHSYFRRW 205


>gi|149199563|ref|ZP_01876597.1| putative exonuclease [Lentisphaera araneosa HTCC2155]
 gi|149137359|gb|EDM25778.1| putative exonuclease [Lentisphaera araneosa HTCC2155]
          Length = 165

 Score = 43.8 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 49/168 (29%), Gaps = 5/168 (2%)

Query: 7   MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M  +  D ET T   +K +    +  + +      +  +   + P   + S   + +HGI
Sbjct: 1   MDFVAIDFETAT---AKRNSACAVAIITVEKGVIVDE-YSELIQPPNNEYSWRNIDVHGI 56

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                  K  F  ++ E       +       +    V   + E   ++   L  +    
Sbjct: 57  EPRHTMYKEDFEDLYPEIRKRLTGKLVVAHNESFDRSVMTRSMEYYDLDYADLGVADRWV 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                 +        LN LC  +GI + H            L     +
Sbjct: 117 CTVKLYKAQGFKPAKLNILCDHFGIPLKHHDALSDARACAELYKRVQE 164


>gi|168032166|ref|XP_001768590.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680089|gb|EDQ66528.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 180

 Score = 43.8 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 6  KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN 41
          +M  +  D+E +GLD + DRI+EI  + + D     
Sbjct: 2  QMPLVWIDLEMSGLDIEKDRILEIACI-VTDGKLEK 36


>gi|325119438|emb|CBZ54991.1| Oligoribonuclease, related [Neospora caninum Liverpool]
          Length = 342

 Score = 43.8 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 4/39 (10%)

Query: 10  IV-FDIETTGLDSKNDRIIEIGAVELLD---YSKTNRTF 44
           IV  D E TGLD + D+IIEI  +               
Sbjct: 167 IVWIDCEMTGLDVERDQIIEIAVIVTDGQCRRRIVGPHL 205


>gi|261855671|ref|YP_003262954.1| exodeoxyribonuclease I [Halothiobacillus neapolitanus c2]
 gi|261836140|gb|ACX95907.1| Exodeoxyribonuclease I [Halothiobacillus neapolitanus c2]
          Length = 495

 Score = 43.8 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 47/168 (27%), Gaps = 7/168 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF---LCPNGRKNSPEA-LKL 62
           M  + +D ETTG D + DR I+  A+   D  +   +       L P    +     +  
Sbjct: 1   MSFLFYDFETTGSDPRCDRPIQFAALRTNDELEPIDSPLTLYATLSPEVLPHPQAVLVTG 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                         +   +       +     +  N+   + F    L+ +    L    
Sbjct: 61  ILPQTLASSGGRPEAEFAALIHAEMMQPGTCAVGFNS---LRFDAELLRFMFWRNLRDPY 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             +  S   R           L +  GI      +    L    L+ V
Sbjct: 118 AHEWKSGNSRWDVLDAARAFRLLRPEGIHWPTDEQGAPTLRLEALTKV 165


>gi|90109308|pdb|2F96|A Chain A, 2.1 A Crystal Structure Of Pseudomonas Aeruginosa Rnase T
           (Ribonuclease T)
 gi|90109309|pdb|2F96|B Chain B, 2.1 A Crystal Structure Of Pseudomonas Aeruginosa Rnase T
           (Ribonuclease T)
          Length = 224

 Score = 43.8 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI A  +      +     T+   + P  G    P AL+  G
Sbjct: 32  VVVDVETGGFNSATDALLEIAATTVGXDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTG 91

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +       + A  + HN+ FD+GF+NA + R    
Sbjct: 92  IKLDHPLRXAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIK 151

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  G    +R  H A  D+   ++++  ++ 
Sbjct: 152 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGXEFDNREAHSARYDTEKTAELFCGIVN 211

Query: 177 GGSQIN 182
              +  
Sbjct: 212 RWKEXG 217


>gi|78776758|ref|YP_393073.1| exonuclease [Sulfurimonas denitrificans DSM 1251]
 gi|78497298|gb|ABB43838.1| Exonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 234

 Score = 43.8 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 5/126 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D+ETTGL+   D+I  IG + + + +  ++     +   G+K S +A  ++ IT+E 
Sbjct: 3   IFLDVETTGLE-NGDKICSIGIICVSETAIFSK--YELVN-EGKKISSKASSINHITNEM 58

Query: 70  LKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +KDKP F    +       N Q++  IAHN  FD+  +           +D  R+   L 
Sbjct: 59  IKDKPKFKDSKTWEILHENNNQSSTIIAHNVNFDLKMLLQSGFLWQGKVVDTLRVTKHLI 118

Query: 129 IARRKH 134
               + 
Sbjct: 119 PECEEF 124


>gi|294815713|ref|ZP_06774356.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus
          ATCC 27064]
 gi|294328312|gb|EFG09955.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus
          ATCC 27064]
          Length = 251

 Score = 43.8 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
          FD+ETTG D +  RI+    VE        R
Sbjct: 22 FDLETTGTDPREARIVTAAVVEARAGEPVRR 52


>gi|326444059|ref|ZP_08218793.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus
          ATCC 27064]
          Length = 285

 Score = 43.8 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
          FD+ETTG D +  RI+    VE        R
Sbjct: 56 FDLETTGTDPREARIVTAAVVEARAGEPVRR 86


>gi|254392979|ref|ZP_05008143.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus
          ATCC 27064]
 gi|197706630|gb|EDY52442.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus
          ATCC 27064]
          Length = 240

 Score = 43.8 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
          FD+ETTG D +  RI+    VE        R
Sbjct: 11 FDLETTGTDPREARIVTAAVVEARAGEPVRR 41


>gi|116687265|ref|YP_840511.1| exonuclease, RNase T and DNA polymerase III [Burkholderia
           cenocepacia HI2424]
 gi|116652980|gb|ABK13618.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
           cenocepacia HI2424]
          Length = 293

 Score = 43.8 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 54/162 (33%), Gaps = 11/162 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D ETTGLD +   I+EI  ++       +      + P        A ++HGITD  +
Sbjct: 131 FIDTETTGLDHQ-AAIVEIAILDRAGAVLID----TLVKP-AMPIPAAATEIHGITDADV 184

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P++++I  +  +         IAHN  FD   +    +                 + 
Sbjct: 185 AGAPAWNTIGPQVAELLAG--RLLIAHNGAFDERLLYQTSRSHGVTLPALRVECTMELLN 242

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                       +L    G      ++H A  D+     + +
Sbjct: 243 GWAGRWLSLADAALMLGAGT---FAARHRACADAEQCRQIVL 281


>gi|257452752|ref|ZP_05618051.1| exonuclease [Fusobacterium sp. 3_1_5R]
 gi|317059293|ref|ZP_07923778.1| exonuclease [Fusobacterium sp. 3_1_5R]
 gi|313684969|gb|EFS21804.1| exonuclease [Fusobacterium sp. 3_1_5R]
          Length = 186

 Score = 43.8 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 2/139 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ETTGL  ++  II++ A+  +D  +   T  ++  P    +  E        
Sbjct: 1   MKILYLDTETTGLTYRS-TIIQLAAIVEIDG-EIKETINLYCAPFPDSDISEEALSITKF 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                 +     +  + +     +  +    N KF V   N +                 
Sbjct: 59  TREEIFQFDSPQVVCQTFTQILGKYVDKYNKNDKFIVIGHNVKFDLDMLRNWAYRCNERF 118

Query: 127 LSIARRKHPSSRNDLNSLC 145
           ++              + C
Sbjct: 119 IASYIDFKNEFDTLAFTKC 137


>gi|153872365|ref|ZP_02001281.1| Exodeoxyribonuclease I [Beggiatoa sp. PS]
 gi|152071166|gb|EDN68716.1| Exodeoxyribonuclease I [Beggiatoa sp. PS]
          Length = 312

 Score = 43.8 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 38/152 (25%), Gaps = 1/152 (0%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67
            + +DIETTGL+    +I++  A+             + +        SP+A   H I+ 
Sbjct: 5   YLFYDIETTGLNKTFAQILQFAAIRTDMQFNEIERHDILIKLRPDVIPSPKATITHRISI 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                         +     N+     + +N               N  P    +  D  
Sbjct: 65  AQSMQGLCEFEAIMQIHRLMNQSGTISLGYNTSSFDDEFLRFCFHRNLLPPYTHQYKDGC 124

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
             +     +    L                  
Sbjct: 125 RRSDLLPITIMYYLYKKEVLENWPEIDGKPTM 156


>gi|330808406|ref|YP_004352868.1| exonuclease [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376514|gb|AEA67864.1| Conserved hypothetical protein; putative exonuclease [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 180

 Score = 43.8 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E TT   G       IIEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLVIDLEATTDEGGWPVTEMEIIEIGATLVNRDGREVDHFQRFVRPLRRPLLTPFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            IT   +      + ++  F  +     ++  +  +  D        +  ++        
Sbjct: 64  HITQANIDSAAPLTEVWPAFERWLTPYQSKLESWVSWGDYDRKQLLQEWQHQQLHSVLGQ 123

Query: 124 IDTLSIARRK 133
           +  +++ +R 
Sbjct: 124 VPHMNLKQRF 133


>gi|257466613|ref|ZP_05630924.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917768|ref|ZP_07914008.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691643|gb|EFS28478.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563]
          Length = 186

 Score = 43.8 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 2/139 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ETTGL  ++  II++ A+  +D  +   T  ++  P    +  E        
Sbjct: 1   MKILYLDTETTGLTYRS-TIIQLAAIVEIDG-EIKETINLYCAPFPDSDISEEALSITKF 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                 +     +  + +     +  +    N KF V   N +                 
Sbjct: 59  TREEIFQFDSPQVVCQTFTQILGKYVDKYNKNDKFIVIGHNVKFDLDMLRNWAYRCNERF 118

Query: 127 LSIARRKHPSSRNDLNSLC 145
           ++              + C
Sbjct: 119 IASYIDFKNEFDTLAFTKC 137


>gi|148272620|ref|YP_001222181.1| oligoribonuclease [Clavibacter michiganensis subsp. michiganensis
          NCPPB 382]
 gi|147830550|emb|CAN01485.1| oligoribonuclease [Clavibacter michiganensis subsp. michiganensis
          NCPPB 382]
          Length = 206

 Score = 43.8 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNG 52
          +  N  R +  D E TGLD   D ++E+  V    D    +  F + + P+ 
Sbjct: 1  MGNNADRLVWIDCEMTGLDLAIDELVEVAVVVTDFDLVPVDDGFTIVINPDP 52


>gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
 gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
          Length = 879

 Score = 43.8 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 62/222 (27%), Gaps = 21/222 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I FD ETTGL+++  +I+     V        N  F V L         +          
Sbjct: 319 IAFDTETTGLNAREAKIVGFSFCV------SENEAFYVPLNHTYLAVPSQISMQAAKRAL 372

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                        ++     E N +           + +  +     +P     + D   
Sbjct: 373 GQIYSHFIIGHNLKYDFAIIENNFKLTPP-----KKYADTMILAWLYNPSLRVNMDDLAL 427

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGSQ 180
                       +    + +      ++ + A  D+++    Y+         ++  G +
Sbjct: 428 RLFDYKTLHFESVVKKGENFASVELEKACNYAAEDAYITLRFYLYFLKNLEPNLLKLGFE 487

Query: 181 INFGF-KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
             F F +          K     +  L ++     ++  EE+
Sbjct: 488 SEFNFIEVLRKMEQNGIKLETQKLQNLMQEFEKEIKLLSEEI 529


>gi|311895419|dbj|BAJ27827.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 235

 Score = 43.8 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
          FD+ETTG D +  RI+    V+ L       T    L P       
Sbjct: 11 FDLETTGTDPEESRIVTAAVVDTLGGGVQGAT-TWLLDPGVPIPDE 55


>gi|259419276|ref|ZP_05743193.1| exodeoxyribonuclease 10 [Silicibacter sp. TrichCH4B]
 gi|259345498|gb|EEW57352.1| exodeoxyribonuclease 10 [Silicibacter sp. TrichCH4B]
          Length = 240

 Score = 43.8 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 71/175 (40%), Gaps = 5/175 (2%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           V D ETTG    +N ++IE G V++   +      F+    P      P  + +H ITD 
Sbjct: 11  VIDYETTGTQEDENAQVIEFGRVDVDLDTLGIVNPFRALAKP-SEPIPPVTMAVHHITDT 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P    ++  FWD    ++    AHNAKF+  F +   ++          +     
Sbjct: 70  DVADAPPPGQVWQPFWDGCRSEDYV-AAHNAKFEQYFHDGNGRKWICTYKSALVVWPDAP 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
               +       ++++   +    + +  H AL D+++ + + ++++   +    
Sbjct: 129 SHGNQALRYWLGIDNIHPSF-DRDAAQPPHRALPDAYVTAHILLELLKHKTPEEL 182


>gi|86151527|ref|ZP_01069741.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315123999|ref|YP_004066003.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|85841156|gb|EAQ58404.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315017721|gb|ADT65814.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 253

 Score = 43.8 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 6/122 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIE+TG       I+EIGA ++ +  +  R FQ F+    ++      +L GIT E +
Sbjct: 74  IVDIESTGG-VSKGEILEIGAAKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYEMV 129

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ PS + + S+F      +++ ++AHN +FD  FI+  L       L   RI       
Sbjct: 130 ENAPSLAKVLSDF--RLFLKDSIFVAHNVRFDYSFISKALNECGFGILLNRRICTIEFAQ 187

Query: 131 RR 132
             
Sbjct: 188 CC 189


>gi|157120012|ref|XP_001653487.1| oligoribonuclease, mitochondrial [Aedes aegypti]
 gi|157120014|ref|XP_001653488.1| oligoribonuclease, mitochondrial [Aedes aegypti]
 gi|108875101|gb|EAT39326.1| oligoribonuclease, mitochondrial [Aedes aegypti]
 gi|108875102|gb|EAT39327.1| oligoribonuclease, mitochondrial [Aedes aegypti]
          Length = 192

 Score = 43.8 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 9/151 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
            D+E TGL+ + DRI+EI  V       TN+  ++    P+   + PE +          
Sbjct: 21  IDLEMTGLEVEKDRILEIACV------ITNKNLEILERGPDIVIHEPEEVLNAMNEWCQT 74

Query: 71  KDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               +    ++     D    +                      I  D +   R +  L+
Sbjct: 75  NHSKTGLIQAVRESKIDLQKAEQMVLDFVKKYCPEKACPLAGNTIYMDRMFLYRYMPQLN 134

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
                     + +  LCKR+   +       
Sbjct: 135 EYLHYRIIDVSTVKELCKRWNGAVFSNCPPK 165


>gi|297191229|ref|ZP_06908627.1| DNA polymerase III subunit epsilon [Streptomyces
          pristinaespiralis ATCC 25486]
 gi|297150828|gb|EDY62400.2| DNA polymerase III subunit epsilon [Streptomyces
          pristinaespiralis ATCC 25486]
          Length = 259

 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          FD+ETTG D  + RI+    VEL      
Sbjct: 30 FDLETTGTDPLDARIVTAAVVELRAGEPV 58


>gi|254571599|ref|XP_002492909.1| RNA exonuclease, required for U4 snRNA maturation [Pichia
          pastoris GS115]
 gi|238032707|emb|CAY70730.1| RNA exonuclease, required for U4 snRNA maturation [Pichia
          pastoris GS115]
          Length = 213

 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD  ND I+EI  +    +    +  ++  +  +    S          
Sbjct: 41 IDCEMTGLDIYNDHIVEICCIITDQNLEVVDEGYESVIHYDNDVMSKMNEWCIEHH 96


>gi|255658382|ref|ZP_05403791.1| putative DNA polymerase III subunit epsilon [Mitsuokella
          multacida DSM 20544]
 gi|260849714|gb|EEX69721.1| putative DNA polymerase III subunit epsilon [Mitsuokella
          multacida DSM 20544]
          Length = 241

 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 8  RKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50
          R +V FD+E  G     D IIEIGA+ L   +     F+  + P
Sbjct: 39 RGVVSFDLEMAGAFP--DDIIEIGAIRLPLGNDKIEVFRRLIRP 80


>gi|296391019|ref|ZP_06880494.1| exonuclease I [Pseudomonas aeruginosa PAb1]
          Length = 480

 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 43/164 (26%), Gaps = 6/164 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETTG+D + DR ++I  +   +  ++      ++  P+          L         
Sbjct: 11  DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70

Query: 72  DKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +   S             +       +N+   + F +   +             +    
Sbjct: 71  AERGLSEADFMTRVHAQLAQPATCVAGYNS---LRFDDEVTRYSLYRNFFDPYAREWQGG 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             R             +  GI         +L    L +   ++
Sbjct: 128 NSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLE 171


>gi|225435975|ref|XP_002271328.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296083947|emb|CBI24335.3| unnamed protein product [Vitis vinifera]
          Length = 245

 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK 39
           D+E TGL+ + DRI+EI  +       
Sbjct: 69 IDLEMTGLNVEVDRILEIACIITDGNLI 96


>gi|218893406|ref|YP_002442275.1| exonuclease I [Pseudomonas aeruginosa LESB58]
 gi|218773634|emb|CAW29448.1| exodeoxyribonuclease I [Pseudomonas aeruginosa LESB58]
          Length = 480

 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 43/164 (26%), Gaps = 6/164 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETTG+D + DR ++I  +   +  ++      ++  P+          L         
Sbjct: 11  DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70

Query: 72  DKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +   S             +       +N+   + F +   +             +    
Sbjct: 71  AERGLSEADFMTRVHAQLAQPATCVAGYNS---LRFDDEVTRYSLYRNFFDPYAREWQGG 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             R             +  GI         +L    L +   ++
Sbjct: 128 NSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLE 171


>gi|118790162|ref|XP_318057.3| AGAP004759-PA [Anopheles gambiae str. PEST]
 gi|116122385|gb|EAA13240.3| AGAP004759-PA [Anopheles gambiae str. PEST]
          Length = 191

 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          M   +    +  D+E TGLD + DRI+EI  +
Sbjct: 1  MSETSVQNLVWIDLEMTGLDVEKDRILEIACI 32


>gi|107100101|ref|ZP_01364019.1| hypothetical protein PaerPA_01001122 [Pseudomonas aeruginosa PACS2]
          Length = 480

 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 43/164 (26%), Gaps = 6/164 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETTG+D + DR ++I  +   +  ++      ++  P+          L         
Sbjct: 11  DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70

Query: 72  DKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +   S             +       +N+   + F +   +             +    
Sbjct: 71  AERGLSEADFMTRVHAQLAQPATCVAGYNS---LRFDDEVTRYSLYRNFFDPYAREWQGG 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             R             +  GI         +L    L +   ++
Sbjct: 128 NSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLE 171


>gi|15599512|ref|NP_253006.1| exonuclease I [Pseudomonas aeruginosa PAO1]
 gi|9950540|gb|AAG07704.1|AE004848_3 exodeoxyribonuclease I [Pseudomonas aeruginosa PAO1]
          Length = 480

 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 43/164 (26%), Gaps = 6/164 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETTG+D + DR ++I  +   +  ++      ++  P+          L         
Sbjct: 11  DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70

Query: 72  DKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +   S             +       +N+   + F +   +             +    
Sbjct: 71  AERGLSEADFMTRVHAQLAQPATCVAGYNS---LRFDDEVTRYSLYRNFFDPYAREWQGG 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             R             +  GI         +L    L +   ++
Sbjct: 128 NSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLE 171


>gi|254244874|ref|ZP_04938196.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 2192]
 gi|126198252|gb|EAZ62315.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 2192]
          Length = 480

 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 43/164 (26%), Gaps = 6/164 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETTG+D + DR ++I  +   +  ++      ++  P+          L         
Sbjct: 11  DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70

Query: 72  DKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +   S             +       +N+   + F +   +             +    
Sbjct: 71  AERGLSEADFMTRVHAQLAQPATCVAGYNS---LRFDDEVTRYSLYRNFFDPYAREWQGG 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             R             +  GI         +L    L +   ++
Sbjct: 128 NSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLE 171


>gi|254239017|ref|ZP_04932340.1| exodeoxyribonuclease I [Pseudomonas aeruginosa C3719]
 gi|126170948|gb|EAZ56459.1| exodeoxyribonuclease I [Pseudomonas aeruginosa C3719]
          Length = 480

 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 43/164 (26%), Gaps = 6/164 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETTG+D + DR ++I  +   +  ++      ++  P+          L         
Sbjct: 11  DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70

Query: 72  DKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +   S             +       +N+   + F +   +             +    
Sbjct: 71  AERGLSEADFMTRVHAQLAQPATCVAGYNS---LRFDDEVTRYSLYRNFFDPYAREWQGG 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             R             +  GI         +L    L +   ++
Sbjct: 128 NSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLE 171


>gi|116052350|ref|YP_792661.1| exonuclease I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587571|gb|ABJ13586.1| exodeoxyribonuclease I [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 480

 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 43/164 (26%), Gaps = 6/164 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETTG+D + DR ++I  +   +  ++      ++  P+          L         
Sbjct: 11  DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70

Query: 72  DKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +   S             +       +N+   + F +   +             +    
Sbjct: 71  AERGLSEADFMTRVHAQLAQPATCVAGYNS---LRFDDEVTRYSLYRNFFDPYAREWQGG 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             R             +  GI         +L    L +   ++
Sbjct: 128 NSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLE 171


>gi|331002523|ref|ZP_08326041.1| hypothetical protein HMPREF0491_00903 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410339|gb|EGG89773.1| hypothetical protein HMPREF0491_00903 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 331

 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 55/235 (23%), Gaps = 26/235 (11%)

Query: 9   KIVFDIE----TTGLDS-KND---RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            IV D+E      G +    D    IIEIGA++L    +T   F   + P   K     +
Sbjct: 4   YIVLDLEWNQSPNGREYSNKDLPFEIIEIGALKLNSRLETVDEFHRVIKPTVYKKMHFKV 63

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                                 F +   +        N +            + +   + 
Sbjct: 64  HEV-----VQIGIGELKKKGVPFVEAIRDFFEFCELDNPEKKKILCTWGNLDLVELQRNM 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                               L ++    G       +    +        +         
Sbjct: 119 KFYGVENKFDYPLFYYDIQKLFNIRYPNGEQDRIPLERAVNMLGIETRRPFHHAFDDAFY 178

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH----DKTIQTL 231
                +  +    KE             D     R ++EE+  H     K + TL
Sbjct: 179 TVKVLQNMDFEPVKE---------YYSLDYYRVPRNSEEEIYLHFSGYSKFVSTL 224


>gi|33593655|ref|NP_881299.1| oligoribonuclease [Bordetella pertussis Tohama I]
 gi|33596303|ref|NP_883946.1| oligoribonuclease [Bordetella parapertussis 12822]
 gi|33602411|ref|NP_889971.1| oligoribonuclease [Bordetella bronchiseptica RB50]
 gi|41017436|sp|Q7VVH7|ORN_BORPE RecName: Full=Oligoribonuclease
 gi|41017438|sp|Q7W9T4|ORN_BORPA RecName: Full=Oligoribonuclease
 gi|41017439|sp|Q7WGX3|ORN_BORBR RecName: Full=Oligoribonuclease
 gi|33563728|emb|CAE42963.1| oligoribonuclease [Bordetella pertussis Tohama I]
 gi|33566072|emb|CAE36971.1| oligoribonuclease [Bordetella parapertussis]
 gi|33576850|emb|CAE33930.1| oligoribonuclease [Bordetella bronchiseptica RB50]
 gi|332383059|gb|AEE67906.1| oligoribonuclease [Bordetella pertussis CS]
          Length = 181

 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +  N+ R +  D+E TGLD + +RIIE+  V
Sbjct: 1  MAANENRLVWLDMEMTGLDPEKERIIEVAVV 31


>gi|310816220|ref|YP_003964184.1| Exonuclease [Ketogulonicigenium vulgare Y25]
 gi|308754955|gb|ADO42884.1| Exonuclease [Ketogulonicigenium vulgare Y25]
          Length = 200

 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +  D+ET   + +   I +IG  AV   +   T  T+   + P         + +HGI
Sbjct: 18  RFLALDVET--ANYRAHSICQIGIAAVRPDN---TIETWTTLIDPED-DFVANNIAIHGI 71

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E +   P F+  F +     +      +            A                D
Sbjct: 72  RPEAVVGAPRFAQAFRQLSPVLSRH----LIFQHSSFDSRCFAAAAERAYLDPPEWTWSD 127

Query: 126 TLSIARRKHP 135
           ++++ARR  P
Sbjct: 128 SVTLARRVWP 137


>gi|251794793|ref|YP_003009524.1| exonuclease RNase T and DNA polymerase III [Paenibacillus sp.
          JDR-2]
 gi|247542419|gb|ACS99437.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus sp.
          JDR-2]
          Length = 264

 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 7  MRKIVFDIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKL 62
          M  I+ DIE  G    +D    +IEIGAV L    +    F   + P      +    K 
Sbjct: 1  MDYIILDIEFNGRKFASDLPMEVIEIGAVRLNADLQQTDIFSSLIKPVYFSKLNSFIKKK 60

Query: 63 HGITDEFLKDKPSFSSIFSEFWDFF 87
           GI  E +   P F  +  EF ++ 
Sbjct: 61 TGIPQEEIDIAPKFPRVIGEFINWL 85


>gi|167854572|ref|ZP_02477353.1| oligoribonuclease [Haemophilus parasuis 29755]
 gi|167854327|gb|EDS25560.1| oligoribonuclease [Haemophilus parasuis 29755]
          Length = 183

 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M +++K   I  D+E TGLD + +RIIEI 
Sbjct: 1  MSQQDKQNLIWIDLEMTGLDPEKERIIEIA 30


>gi|152981086|ref|YP_001352542.1| oligoribonuclease [Janthinobacterium sp. Marseille]
 gi|151281163|gb|ABR89573.1| oligoribonuclease protein [Janthinobacterium sp. Marseille]
          Length = 195

 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          IR N+   +  D+E TGLD   DRIIE+  V
Sbjct: 15 IRPNEFNLVWVDMEMTGLDPDKDRIIEVAVV 45


>gi|83648050|ref|YP_436485.1| oligoribonuclease [Hahella chejuensis KCTC 2396]
 gi|123531236|sp|Q2SBB4|ORN_HAHCH RecName: Full=Oligoribonuclease
 gi|83636093|gb|ABC32060.1| Oligoribonuclease (3'->5' exoribonuclease) [Hahella chejuensis
          KCTC 2396]
          Length = 182

 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD  +DRIIE+  V
Sbjct: 10 IDLEMTGLDPDSDRIIEMAVV 30


>gi|58258529|ref|XP_566677.1| oligoribonuclease [Cryptococcus neoformans var. neoformans JEC21]
 gi|57222814|gb|AAW40858.1| oligoribonuclease, putative [Cryptococcus neoformans var.
          neoformans JEC21]
          Length = 184

 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37
           D E TGLD  NDRIIEI  +     
Sbjct: 16 VDCEMTGLDFLNDRIIEIAVIITDGR 41


>gi|288939927|ref|YP_003442167.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum
           DSM 180]
 gi|288895299|gb|ADC61135.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum
           DSM 180]
          Length = 225

 Score = 43.4 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 8/170 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITD 67
            +  D+ETTGLD + D I+ +G V L        T     +    R     +  +H ITD
Sbjct: 41  YLAIDLETTGLDQRQDLILSVGYVVLHGPEIDLSTARHHLVR-IDRSIPEASAVIHQITD 99

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRI 123
           +          +  E            IAH+A  + GF++   QR         L  ++ 
Sbjct: 100 DQAATGRELEDVLGEVLAALTG--RVMIAHHAGIEQGFLSQACQRCWGRGLPLRLVDTQT 157

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +   ++ RR+ P   +DL          +     H AL D+   +++++ 
Sbjct: 158 LAHRTLERRQIPFKASDLRLHALTSRYNLPRHGAHNALSDALSAAELFLA 207


>gi|158337902|ref|YP_001519078.1| exonuclease [Acaryochloris marina MBIC11017]
 gi|158308143|gb|ABW29760.1| exonuclease [Acaryochloris marina MBIC11017]
          Length = 183

 Score = 43.4 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 7/131 (5%)

Query: 2   IRKNKMRKIVFDIETT-----GLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKN 55
           ++ ++   ++ D+E T      +  +   +IEIGAV L   +      +Q F+ P     
Sbjct: 1   MKISQKYYLIVDLEATCADDNSIPRRRMEMIEIGAVLLNSQTLQIESEYQTFIKPILHPV 60

Query: 56  -SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            +     L  I+ + ++  P F +   +F  +F    +        +D      + Q   
Sbjct: 61  LTEFCKSLTSISQQDIEKAPLFPAALKDFQSWFYPCGSYLFCSWGDYDRHQFVQDCQMHG 120

Query: 115 KDPLDPSRIID 125
                P   ++
Sbjct: 121 VGYPFPGDHLN 131


>gi|71892146|ref|YP_277878.1| ribonuclease T [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|123640967|sp|Q492U0|RNT_BLOPB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|71796252|gb|AAZ41003.1| ribonuclease T [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 217

 Score = 43.4 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 60/187 (32%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLC--PNGRKNSPEALKLH 63
           +V D+ET GLD+  + ++EI           +   + +    +   P             
Sbjct: 20  VVVDVETAGLDANINALLEIAVATFKMDEYGWLCVDGSLNFHIKSFPGAIIQPESLAFNG 79

Query: 64  -------GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
                         +       +  +         A  +AHNA FD  F+ A ++R++  
Sbjct: 80  IDLNSPLRAAVTEQEALHEIFEMVRQGIKTQGCSRAIIVAHNAFFDHSFLMAAVERVSFM 139

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +P         A          + +  C   G+       H AL D+   + ++ +++
Sbjct: 140 EKNPFHPFVMFDTATLSGLVFGQTVLAKACACAGVFFDKNKAHSALYDTERTAMLFCELV 199

Query: 176 VGGSQIN 182
               ++ 
Sbjct: 200 NKWKRLG 206


>gi|262198353|ref|YP_003269562.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
          DSM 14365]
 gi|262081700|gb|ACY17669.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
          DSM 14365]
          Length = 187

 Score = 43.4 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLD 36
          D+E TGLD + +RIIEI  +   +
Sbjct: 11 DLEMTGLDPERERIIEIAVLITDN 34


>gi|255523173|ref|ZP_05390144.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|296186139|ref|ZP_06854544.1| exonuclease [Clostridium carboxidivorans P7]
 gi|255513041|gb|EET89310.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|296049407|gb|EFG88836.1| exonuclease [Clostridium carboxidivorans P7]
          Length = 255

 Score = 43.4 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 77/234 (32%), Gaps = 18/234 (7%)

Query: 7   MRKIVFDIE-TTGLDSKND-----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M  IVFD+E    L+SK +            II+IGAV+L +  +        + P    
Sbjct: 1   MNYIVFDLEFNQSLNSKKENKNLTNLKCPFEIIQIGAVKLDENLQIISILNKLVKPELYT 60

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQ 111
             +P   ++ GIT + L  +  F  ++ E  +F            A    ++        
Sbjct: 61  VMNPFVEEMTGITIDMLNTEQPFQEVYKEILEFIGNDKNILCVWGACDIKELFRNIQYHN 120

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                       I   +      P   N                  H AL D++  ++V+
Sbjct: 121 LDISPISKEYINIQFYASKYLNCPKGTNIGLKNAAELLNINIENKFHNALNDAYYTAEVF 180

Query: 172 IKM-MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT--RITKEELD 222
            K+     + I +    N        +K++ + S L +         +++EE  
Sbjct: 181 KKIPKKNINIIKYDVNKNMKPTRNNTEKSILDTSKLIKQFEKMFNREMSEEEQK 234


>gi|152988725|ref|YP_001350220.1| exonuclease I [Pseudomonas aeruginosa PA7]
 gi|150963883|gb|ABR85908.1| exodeoxyribonuclease I [Pseudomonas aeruginosa PA7]
          Length = 478

 Score = 43.4 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 48/157 (30%), Gaps = 9/157 (5%)

Query: 7   MRKIVF--DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLH 63
           M   +F  D ETTG+D + DR ++I  +   +  ++      ++  P+           H
Sbjct: 1   MNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILP------H 54

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            +        P   +        F  +    +AH A    G+ +                
Sbjct: 55  PMACLITGITPQRLAERGLSEADFMTRVHAQLAHPATCVAGYNSLRFDDEVTRYSLYRNF 114

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
            D  +   +   S  + ++ +   Y +         A
Sbjct: 115 FDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPEA 151


>gi|134106503|ref|XP_778262.1| hypothetical protein CNBA2620 [Cryptococcus neoformans var.
          neoformans B-3501A]
 gi|50260965|gb|EAL23615.1| hypothetical protein CNBA2620 [Cryptococcus neoformans var.
          neoformans B-3501A]
          Length = 214

 Score = 43.4 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37
           D E TGLD  NDRIIEI  +     
Sbjct: 16 VDCEMTGLDFLNDRIIEIAVIITDGR 41


>gi|225077243|ref|ZP_03720442.1| hypothetical protein NEIFLAOT_02298 [Neisseria flavescens
           NRL30031/H210]
 gi|224951387|gb|EEG32596.1| hypothetical protein NEIFLAOT_02298 [Neisseria flavescens
           NRL30031/H210]
          Length = 230

 Score = 43.4 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 47/178 (26%), Gaps = 3/178 (1%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+E TGL+ ++DRIIE+  +             V++     +      + +  T     
Sbjct: 56  LDMEMTGLNPEHDRIIEVAMIITDSDLNVLAQSDVYVIHQSDELLDGMDEWNTATHGRTG 115

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                        +          A                I++D     + +  L    
Sbjct: 116 LTQRVRESKLTEAEVEQNLLDFMSAW---IPEKSTPMCGNSIHQDRRFMVKYMPHLEAYF 172

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
                  + L  L KR+   ++          +       I+ M    +      + +
Sbjct: 173 HYRNLDVSTLKELAKRWNPAVAKSVVKRGSHKALDDILESIEEMRHYREHFLKLPSEQ 230


>gi|226364575|ref|YP_002782357.1| DNA polymerase III subunit epsilon [Rhodococcus opacus B4]
 gi|226243064|dbj|BAH53412.1| putative exonuclease [Rhodococcus opacus B4]
          Length = 247

 Score = 43.4 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 9/145 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG D  + RI+    + ++D +   +RT+   L P        +      T+  
Sbjct: 11  AFDLETTGPDPTDARIVS-ACIAVVDAHHFESRTW--LLDPEVPIPQGASDVHGISTEYA 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                 +++ + E  D   +        +A NA +D+  ++ E  R+    L    ++D 
Sbjct: 68  RAHGQDYATGYREIRDALYDAWTRDHAVVAFNASYDLTVMHTEGLRLGLPELVHGIVVDP 127

Query: 127 LSIARRKHPSSRNDLN--SLCKRYG 149
             I R      +      ++C+ YG
Sbjct: 128 YVIDREMDRYRKGRRTLGAVCEHYG 152


>gi|224083745|ref|XP_002307108.1| predicted protein [Populus trichocarpa]
 gi|222856557|gb|EEE94104.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score = 43.4 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 10 IVFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNG 52
          + FD+ETT  +    R  ++E GA+ +         ++   + P  
Sbjct: 13 VFFDLETTVPNKAGQRFWVLEFGAIIVCPRKLVELDSYSTLIRPED 58


>gi|260801297|ref|XP_002595532.1| hypothetical protein BRAFLDRAFT_244216 [Branchiostoma floridae]
 gi|229280779|gb|EEN51544.1| hypothetical protein BRAFLDRAFT_244216 [Branchiostoma floridae]
          Length = 208

 Score = 43.4 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 21/114 (18%)

Query: 9   KIVFDIETTGLD-SKNDRIIEI--GAVELLDYSKTN--------------RTFQVFLCPN 51
            + FD+ETTGLD  +   I EI   AV   D   T                 F V + P 
Sbjct: 3   FVFFDLETTGLDQPRQ--ITEISLAAVR-RDQLLTGTTVPPGGATIPRVMDKFTVCVRP- 58

Query: 52  GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            R   P+A ++  +T++ L     F     +       +    +   A     F
Sbjct: 59  RRDIHPKAAEITNLTNQTLGKHRVFDEDLVKSVVHLLNRQEPPVCLVAHNGNRF 112


>gi|330813552|ref|YP_004357791.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486647|gb|AEA81052.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. IMCC9063]
          Length = 473

 Score = 43.4 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ 45
          M    +D ETTG     D+II++GAV +    +    F+
Sbjct: 1  MNYAFYDFETTGRSGTWDQIIQVGAVLVNAEFQELDRFE 39


>gi|317503610|ref|ZP_07961630.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
 gi|315665271|gb|EFV04918.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
          Length = 284

 Score = 43.4 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIET  +  +      +G V + +     + F   + P     +     +HGIT E +
Sbjct: 8   VIDIET--MTPERTSACALGLVRVENDVIVQK-FYSLIKPIPDDRTVTNTHVHGITPEMV 64

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           ++ P+F  ++     + +       AHN  FD
Sbjct: 65  ENAPTFQDLWPTIEHYISG--QVLAAHNTSFD 94


>gi|313497913|gb|ADR59279.1| Exonuclease [Pseudomonas putida BIRD-1]
          Length = 183

 Score = 43.4 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 5/112 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E TT   G       +IEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLVIDLEATTDDGGWPVTEMEVIEIGASLVTREGREVDHFQRFVKPRRRPQLTPFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            I+   +     F  +++ F  +      +  A  +  D        +    
Sbjct: 64  HISQADVDSAAPFREVWASFERWLGHHRGQLQAWVSWGDYDRQQLHQEWQQH 115


>gi|299142830|ref|ZP_07035958.1| exonuclease [Prevotella oris C735]
 gi|298575698|gb|EFI47576.1| exonuclease [Prevotella oris C735]
          Length = 284

 Score = 43.4 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIET  +  +      +G V + +     + F   + P     +     +HGIT E +
Sbjct: 8   VIDIET--MTPERTSACALGLVRVENDVIVQK-FYSLIKPIPDDRTVTNTHVHGITPEMV 64

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           ++ P+F  ++     + +       AHN  FD
Sbjct: 65  ENAPTFQELWPTIEHYISG--QVLAAHNTSFD 94


>gi|294676886|ref|YP_003577501.1| exonuclease family protein [Rhodobacter capsulatus SB 1003]
 gi|294475706|gb|ADE85094.1| exonuclease family protein [Rhodobacter capsulatus SB 1003]
          Length = 200

 Score = 43.4 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 57/180 (31%), Gaps = 10/180 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I  D+ET   ++    + +IG   +         F   + P  +  +P  + LHGI  
Sbjct: 9   RFIALDVET--ANADAASLCQIGLACVRHDGAI-EVFSTLIDP-RQPFAPFNVALHGIGP 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  PSF  + +        Q    +  ++ FD G I+      +             
Sbjct: 65  AKVRGAPSFPEVLARIAPLLAPQ---IVIQHSPFDRGAIHRACHAHDLPEPGWHWADSVQ 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
              R     S N  + L           + H A  D+   + V    +   +Q     + 
Sbjct: 122 IARRAWPEFSGNGGHGLAHLKQALGLEFTHHDAGEDAKAAAMVV---LRAEAQTGLRLEE 178


>gi|196250879|ref|ZP_03149564.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           G11MC16]
 gi|196209608|gb|EDY04382.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           G11MC16]
          Length = 207

 Score = 43.4 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 48/191 (25%), Gaps = 19/191 (9%)

Query: 9   KIVFDIE-------TT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPE 58
            +  D E       TT  G   +   IIE+G V ++D       F  ++ P      +  
Sbjct: 7   YLFLDFEFTMPETKTTPNGFSPE---IIEVGLVAVVDEQIV-NQFSSYVKPLRFPQLTDR 62

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                 IT E +    SF  + S    +  E+    +                   + P 
Sbjct: 63  CKSFLNITQEQIDSGMSFYELVSLLRQYDRERPTTVVTWGNMDMKVLRENCQSARVEFPF 122

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT-----ISHRSKHGALLDSHLLSDVYIK 173
                   +   R     ++  L    + YG                      L +   K
Sbjct: 123 TGEHRDLAMEYKRFFGNKNQTALRKAVQEYGNEGIGKAHCALDDAFTAYTIFRLIENDKK 182

Query: 174 MMVGGSQINFG 184
            +        G
Sbjct: 183 YLAKTKPPTIG 193


>gi|187477876|ref|YP_785900.1| oligoribonuclease [Bordetella avium 197N]
 gi|123515337|sp|Q2L2P5|ORN_BORA1 RecName: Full=Oligoribonuclease
 gi|115422462|emb|CAJ48987.1| oligoribonuclease [Bordetella avium 197N]
          Length = 181

 Score = 43.4 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +  N+ R +  D+E TGLD + +RIIE+  V
Sbjct: 1  MAANENRLVWLDMEMTGLDPEKERIIEVAVV 31


>gi|330721640|gb|EGG99654.1| DNA polymerase III epsilon subunit [gamma proteobacterium
          IMCC2047]
          Length = 224

 Score = 43.4 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39
           +V D+ETT LD+ N  ++ IG V +   S 
Sbjct: 41 FLVVDLETTSLDADNGEVVSIGWVPVKSGSI 71


>gi|284006621|emb|CBA71882.1| oligoribonuclease [Arsenophonus nasoniae]
          Length = 173

 Score = 43.4 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 24 IDLEMTGLDPQQDRIIEIA 42


>gi|289209008|ref|YP_003461074.1| exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
          K90mix]
 gi|288944639|gb|ADC72338.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
          K90mix]
          Length = 188

 Score = 43.4 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 15/19 (78%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +NDRIIE+ 
Sbjct: 11 IDLEMTGLDPQNDRIIEVA 29


>gi|254374578|ref|ZP_04990059.1| hypothetical protein FTDG_00751 [Francisella novicida GA99-3548]
 gi|151572297|gb|EDN37951.1| hypothetical protein FTDG_00751 [Francisella novicida GA99-3548]
          Length = 482

 Score = 43.4 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 41/155 (26%), Gaps = 2/155 (1%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71
           D+ET+G+++  D++++  A+           F  F+  N      P A   H I+     
Sbjct: 11  DLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPMATITHHISIAQAN 70

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
              +      +     N      I +N               N  P    +  +  S A 
Sbjct: 71  TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKNGCSRAD 130

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
              P          +      +            L
Sbjct: 131 L-FPIVTCYYLFCNEVLNWPKAIDEDGQEKTSLKL 164


>gi|190406098|gb|EDV09365.1| RNA exonuclease [Saccharomyces cerevisiae RM11-1a]
          Length = 269

 Score = 43.4 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 48/210 (22%), Gaps = 12/210 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLCPNGRKNSPEALKLH 63
            D E TGLD  NDRIIEI  +    +         + +  ++  +       +       
Sbjct: 58  IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCI 117

Query: 64  GITDEFLKDKPSFSSIF---SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                        +S         +            N     G      +         
Sbjct: 118 EHHGNSGLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRLFMVREFPK 177

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                   I            ++   +        + H A  D           M    +
Sbjct: 178 VIDHLFYRIVDVSSIMEVARRHNPALQA-RNPKKEAAHTAYSDIKESIAQLQWYMDNYLK 236

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
                ++ E    ++ +    + S  KR +
Sbjct: 237 PPQETESVESIGSEQPESPSSSTSYFKRQR 266


>gi|302877146|ref|YP_003845779.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|307687841|ref|ZP_07630287.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|302580003|gb|ADL54015.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
          Length = 205

 Score = 43.4 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 8/131 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           M  I FD ETTGL      I ++  +++           + F   +     + S EA+  
Sbjct: 1   MNMIFFDTETTGLKPGQ--ICQLSYIKVTTDTKPQKVEGKNFFFSV--EDIEPSAEAIHG 56

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             + D          S   E +          I +N  FD+ F+ AE  R+  + +    
Sbjct: 57  FSVEDLIELSDGCEFSDLYEEFINDFVDCDLVIGYNVNFDIKFLVAEFYRLGINYIPKMD 116

Query: 123 IIDTLSIARRK 133
                      
Sbjct: 117 FCAMQYYKEIC 127


>gi|72381899|ref|YP_291254.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. NATL2A]
 gi|72001749|gb|AAZ57551.1| DNA polymerase III, epsilon subunit [Prochlorococcus marinus str.
           NATL2A]
          Length = 292

 Score = 43.4 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 76/166 (45%), Gaps = 8/166 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             ++ D ETTGLD++ND  +E+G++     S++    Q FL P    N+ +         
Sbjct: 67  NILILDTETTGLDNENDDCLEVGSILFNVKSRSVLAQQSFLLPVEINNAEK----INNIP 122

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P   S   ++++     +   +AHN++FD  +    L+++ +        +D +
Sbjct: 123 AEITRLPQPLSEAIKYFESLVRVSNVIVAHNSEFDKKWFG--LKKLPQIEKPWICSMDDI 180

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    +   +R  +  L   YG+ +   + H AL D   L++V+I+
Sbjct: 181 TWPADRQLKTRPSVRDLALAYGVPVW--NAHRALTDCIYLAEVFIR 224


>gi|27263219|gb|AAN88025.1| putative oligoribonuclease [Diachasmimorpha longicaudata
          entomopoxvirus]
          Length = 206

 Score = 43.4 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFL 48
           D+E TGLD + D I+EIG  +       T+  F + +
Sbjct: 34 LDLEMTGLDPETDNILEIGCFITNDALEITSPIFHMII 71


>gi|292628026|ref|XP_002666829.1| PREDICTED: probable transcription factor PML-like isoform 1 [Danio
           rerio]
 gi|326679985|ref|XP_003201423.1| PREDICTED: probable transcription factor PML-like isoform 2 [Danio
           rerio]
          Length = 235

 Score = 43.0 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 62/224 (27%), Gaps = 19/224 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGLDS +  I+++ AV       T   F V   P  R  S            F
Sbjct: 13  VFFDLETTGLDS-SCEIVQLAAV---SGGHTFNLFMVPRRPFQRGASRITGFSVKHQRLF 68

Query: 70  LKDKP-----------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           L  +P           SF S            +      +       ++    R +    
Sbjct: 69  LHRRPLLTSSLKEALLSFISFLRMLDHPLLLGHNIR-RFDCPVLARALDEFSLRSHFQRE 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---M 175
               +       +                  +     + H AL D   L  +Y K+    
Sbjct: 128 VSGFVDTLPLARQLLKDHGLQSFKQESLVKNLLGVSYAAHNALEDVQALQKLYWKLKPSA 187

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
               Q  F   +  +    + +      S L         IT+E
Sbjct: 188 NQIQQHTFTLDSLANPPVNQVQVGASGESGLCERFRKVMDITEE 231


>gi|70732181|ref|YP_261937.1| ribonuclease T [Pseudomonas fluorescens Pf-5]
 gi|123653314|sp|Q4K746|RNT_PSEF5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|68346480|gb|AAY94086.1| ribonuclease T [Pseudomonas fluorescens Pf-5]
          Length = 223

 Score = 43.0 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 68/193 (35%), Gaps = 13/193 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI A  +      +     T+   + P  G      AL+  G
Sbjct: 31  VVVDVETGGFNSATDALLEIAATTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 90

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +       + A  + HN+ FD+GF+NA + R++  
Sbjct: 91  IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 150

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    R  H A  D+   ++++  ++ 
Sbjct: 151 RNPFHPFSSFDTATLAGLAYGQTVLAKACQSADIDFDGREAHSARYDTEKTAELFCGIVN 210

Query: 177 GGSQINFGFKTNE 189
              Q+      ++
Sbjct: 211 RWKQMGGWQDFDD 223


>gi|242014597|ref|XP_002427973.1| oligoribonuclease, putative [Pediculus humanus corporis]
 gi|212512472|gb|EEB15235.1| oligoribonuclease, putative [Pediculus humanus corporis]
          Length = 196

 Score = 43.0 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)

Query: 6  KM---RKIVFDIETTGLDSKNDRIIEIGAV 32
          KM   R I  D+E TGL+ + D I+E+  +
Sbjct: 17 KMTLDRYIWIDLEMTGLNPETDTILEVACI 46


>gi|26990938|ref|NP_746363.1| exonuclease [Pseudomonas putida KT2440]
 gi|24985960|gb|AAN69827.1|AE016622_4 exonuclease [Pseudomonas putida KT2440]
          Length = 183

 Score = 43.0 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 5/112 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E TT   G       +IEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLVIDLEATTDDGGWPVTEMEVIEIGASLVTREGREVDHFQRFVKPRRRPQLTPFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            I+   +     F  +++ F  +      +  A  +  D        +    
Sbjct: 64  HISQADVDSAAPFREVWASFERWLGHHRGQLQAWVSWGDYDRQQLHQEWQQY 115


>gi|254373125|ref|ZP_04988614.1| exodeoxyribonuclease I [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570852|gb|EDN36506.1| exodeoxyribonuclease I [Francisella novicida GA99-3549]
          Length = 482

 Score = 43.0 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 1/132 (0%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71
           D+ET+G+++  D++++  A+           F  F+  N      P A   H I+     
Sbjct: 11  DLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPMATITHHISIAQAN 70

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
              +      +     N      I +N               N  P    +  +  S A 
Sbjct: 71  TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKNGCSRAD 130

Query: 132 RKHPSSRNDLNS 143
                +   L  
Sbjct: 131 LFPIVTCYYLFC 142


>gi|134302180|ref|YP_001122149.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418]
 gi|134049957|gb|ABO47028.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418]
          Length = 482

 Score = 43.0 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 1/132 (0%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71
           D+ET+G+++  D++++  A+           F  F+  N      P A   H I+     
Sbjct: 11  DLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPMATITHHISIAQAN 70

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
              +      +     N      I +N               N  P    +  +  S A 
Sbjct: 71  TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKNGCSRAD 130

Query: 132 RKHPSSRNDLNS 143
                +   L  
Sbjct: 131 LFPIVTCYYLFC 142


>gi|302879370|ref|YP_003847934.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
 gi|302582159|gb|ADL56170.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
          Length = 181

 Score = 43.0 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 45/174 (25%), Gaps = 3/174 (1%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+E TGL+   DRIIE+  V      +T     V +              +  T     
Sbjct: 11  IDMEMTGLNPDTDRIIEVAIVVTDSNLETIAEAPVLVVHQPDSIMDGMDAWNKSTHGKSG 70

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                  + +   +                 +         I +D    +R +       
Sbjct: 71  L---IERVKASTLNEAAVSAQMVAFLKEYVPIRTSPMCGNSICQDRRFMARWMPEFEEYF 127

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                  + L  L +R+   ++   K     ++       I+ +    +     
Sbjct: 128 HYRNLDVSTLKELARRWKPDMAKGVKKHGKHEALADIYESIEELKHYREHFIKL 181


>gi|227505999|ref|ZP_03936048.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC
           6940]
 gi|227197281|gb|EEI77329.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC
           6940]
          Length = 526

 Score = 43.0 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 19/48 (39%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
            +   ++TTG+     R++ I A+      +  + F   + P+     
Sbjct: 87  FVALTVQTTGIHPSTARLVAIDALTFNAQGEVGQEFHAVVNPDIDPGP 134


>gi|206603443|gb|EDZ39923.1| DNA polymerase III, epsilon subunit [Leptospirillum sp. Group II
           '5-way CG']
          Length = 265

 Score = 43.0 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 9/172 (5%)

Query: 7   MRKIVFDIETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+    D+ETTGL  DS+  RIIE+G     +     +     +  +         K++G
Sbjct: 1   MKITFLDVETTGLLRDSR-ARIIELGFSTWENGKLLRKN-STLIK-SVDVVPDNISKING 57

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT E LKD P F  ++    + F    +  +AHN  FDVG +N EL   N+ PL    I 
Sbjct: 58  ITTEMLKDAPGFEDVWKSIKEDFQG--SILVAHNLAFDVGMVNRELILANRIPLGNMGID 115

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                 +     S   L  + K  GI       H A+ D   L  +   ++ 
Sbjct: 116 TLPLSRKMLPELSSYRLGEIAKHMGILNESP--HRAMGDLETLEKILSNLLE 165


>gi|157737359|ref|YP_001490042.1| hypothetical protein Abu_1113 [Arcobacter butzleri RM4018]
 gi|315637075|ref|ZP_07892298.1| exonuclease superfamily protein [Arcobacter butzleri JV22]
 gi|157699213|gb|ABV67373.1| hypothetical protein Abu_1113 [Arcobacter butzleri RM4018]
 gi|315478611|gb|EFU69321.1| exonuclease superfamily protein [Arcobacter butzleri JV22]
          Length = 171

 Score = 43.0 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 7/169 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEALKLHGITD 67
           I+ D ET   ++  D ++EI AV++         F  +          S E  +L     
Sbjct: 2   IILDFETN-TNNIGD-VLEIAAVKIDKNFNILDKFHRYYLSRFPLNFYSYEVHRLTPELI 59

Query: 68  EFLKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
              +   ++       E ++ F  ++   IAHN  F++  IN  ++  N          +
Sbjct: 60  LDYRKDKNYSSYFSEDEDFEKFCYESETLIAHNISFELRHINNRVKFKNCICTMSENK-N 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +++  +        L+  C  YGI       H A  D     ++  +M
Sbjct: 119 IVNVFGKNGRIKNPKLDETCNYYGIEFDASKYHSATYDVTKTYEILKRM 167


>gi|208779832|ref|ZP_03247176.1| exonuclease family protein [Francisella novicida FTG]
 gi|208744287|gb|EDZ90587.1| exonuclease family protein [Francisella novicida FTG]
          Length = 482

 Score = 43.0 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 1/132 (0%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71
           D+ET+G+++  D++++  A+           F  F+  N      P A   H I+     
Sbjct: 11  DLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPMATITHHISIAQAN 70

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
              +      +     N      I +N               N  P    +  +  S A 
Sbjct: 71  TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKNGCSRAD 130

Query: 132 RKHPSSRNDLNS 143
                +   L  
Sbjct: 131 LFPIVTCYYLFC 142


>gi|118497767|ref|YP_898817.1| exodeoxyribonuclease I [Francisella tularensis subsp. novicida
           U112]
 gi|194323739|ref|ZP_03057515.1| exonuclease family protein [Francisella tularensis subsp. novicida
           FTE]
 gi|118423673|gb|ABK90063.1| exodeoxyribonuclease I [Francisella novicida U112]
 gi|194322103|gb|EDX19585.1| exonuclease family protein [Francisella tularensis subsp. novicida
           FTE]
          Length = 482

 Score = 43.0 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 1/132 (0%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71
           D+ET+G+++  D++++  A+           F  F+  N      P A   H I+     
Sbjct: 11  DLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPMATITHHISIAQAN 70

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
              +      +     N      I +N               N  P    +  +  S A 
Sbjct: 71  TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKNGCSRAD 130

Query: 132 RKHPSSRNDLNS 143
                +   L  
Sbjct: 131 LFPIVTCYYLFC 142


>gi|301604764|ref|XP_002932007.1| PREDICTED: ERI1 exoribonuclease 2 [Xenopus (Silurana) tropicalis]
          Length = 693

 Score = 43.0 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 61/228 (26%), Gaps = 30/228 (13%)

Query: 10  IVFDIETT----GLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           I+ D E+T    G       IIE  AV L +   +    F  ++ P      S    +L 
Sbjct: 39  IIIDFESTCWKDG-KHSTQEIIEFPAVLLNVANGEIESEFHTYVQPQEHPILSEFCTELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI    + +        S+F  +  +   E              AE +           +
Sbjct: 98  GIKQLQVDNGVPLKICLSQFNSWIQKLQKEKGIAFVTAVPTHSAAEHKMCAFVTWSDWDL 157

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK-----MMVGG 178
              L    R+                  +       + +D      ++       +    
Sbjct: 158 GVCLLYECRR----------------KQMKKPDILNSWIDLRATYKLFYNRRPKGLNGAL 201

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE-ELDEHD 225
             +   F   E     + + T      + RD     +ITK  +   H 
Sbjct: 202 QDLGIEFSGREHSGLDDSRNTAKLAWRMIRDGC-VMKITKSLDKVNHK 248


>gi|296273794|ref|YP_003656425.1| exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis
           DSM 7299]
 gi|296097968|gb|ADG93918.1| Exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis
           DSM 7299]
          Length = 173

 Score = 43.0 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 47/174 (27%), Gaps = 14/174 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVF------LCPNGRKNSPEAL 60
           I+ D ET         +IE  AV+L            F  +      + P   +      
Sbjct: 2   IILDFETN--SHNEHDVIEAAAVKLELVNGEYVVCDKFHRYYLSRYPVNPYSYEVHKLTP 59

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +      +       F          F       +AHN  F++  +   +   N      
Sbjct: 60  EAILKIRQNSSYASYFKEDEDFV--EFCSGVETLVAHNISFELRHLRQIVNFKNHICTMK 117

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                 +    +        L+ +C  YGI       H A  D     ++  +M
Sbjct: 118 ENK-HIVKALNKNAKIKNPTLDEVCFYYGIEFDENKHHSATYDVSKTFEILKRM 170


>gi|325275518|ref|ZP_08141430.1| exonuclease [Pseudomonas sp. TJI-51]
 gi|324099350|gb|EGB97284.1| exonuclease [Pseudomonas sp. TJI-51]
          Length = 183

 Score = 43.0 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E TT   G       +IEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLVIDLEATTDEGGWPVTEMEVIEIGASLVTREGREVDHFQRFVRPRRRPQLTPFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            I+   +     F  +++ F  +  +   +  A  +  D        +    
Sbjct: 64  HISQADVDAAAPFREVWASFEHWLGQHREQLQAWVSWGDYDRQQLHQEWHLH 115


>gi|301026596|ref|ZP_07190019.1| exonuclease [Escherichia coli MS 69-1]
 gi|300395429|gb|EFJ78967.1| exonuclease [Escherichia coli MS 69-1]
          Length = 220

 Score = 43.0 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I++I +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVDIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153


>gi|33151672|ref|NP_873025.1| oligoribonuclease [Haemophilus ducreyi 35000HP]
 gi|38372407|sp|Q7VNN8|ORN_HAEDU RecName: Full=Oligoribonuclease
 gi|33147893|gb|AAP95414.1| oligoribonuclease [Haemophilus ducreyi 35000HP]
          Length = 183

 Score = 43.0 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD   DRIIEI 
Sbjct: 12 IDLEMTGLDPNQDRIIEIA 30


>gi|90108543|pdb|1YTA|A Chain A, Crystal Structure Of Oligoribonuclease, The Lone
          Essential Exoribonuclease In Escherichia Coli
 gi|90108544|pdb|1YTA|B Chain B, Crystal Structure Of Oligoribonuclease, The Lone
          Essential Exoribonuclease In Escherichia Coli
 gi|90108545|pdb|1YTA|C Chain C, Crystal Structure Of Oligoribonuclease, The Lone
          Essential Exoribonuclease In Escherichia Coli
 gi|90108546|pdb|1YTA|D Chain D, Crystal Structure Of Oligoribonuclease, The Lone
          Essential Exoribonuclease In Escherichia Coli
          Length = 180

 Score = 43.0 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 10 IDLEXTGLDPERDRIIEIA 28


>gi|329121817|ref|ZP_08250433.1| exonuclease [Dialister micraerophilus DSM 19965]
 gi|327468090|gb|EGF13578.1| exonuclease [Dialister micraerophilus DSM 19965]
          Length = 195

 Score = 43.0 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 8/176 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+    D ET     K +    +G V       T+  +   + P       E ++++GI 
Sbjct: 1   MKYTAIDFETA-FWGKGNA-CSLGIVISDGSKLTDEWYD-LIRPVHLNFDEECIRVNGIH 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +KDKP F   +++     N       AHNA FD G +   + R     ++       
Sbjct: 58  PEDVKDKPEFPYYWNKISGLLNG--TVAFAHNAPFDFGVLANTIDRYELPDINFYWGDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
                       + LN++ +         + H AL D+     +    ++  +  N
Sbjct: 116 EISRILWKKLPNHKLNTVAEFLNFEF---NHHQALDDARACEWIVRHALLETNSSN 168


>gi|300933650|ref|ZP_07148906.1| DNA polymerase III subunit epsilon [Corynebacterium resistens DSM
          45100]
          Length = 226

 Score = 43.0 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
          FD+ETTG D K  RI+    + +       R  Q  L   G +   +A  +HGI
Sbjct: 16 FDLETTGTDPKTCRIVTSAMISIEGR---ERKDQELLADPGVEIPEQATAVHGI 66


>gi|1019712|gb|AAA98633.1| YNT20 [Saccharomyces cerevisiae]
          Length = 248

 Score = 43.0 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 8/70 (11%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLCPNGRKNSPEALKLH 63
            D E TGLD  NDRIIEI  +    +         + +  ++  +       +       
Sbjct: 58  IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYETVIHYGPEVMNKMNEWCI 117

Query: 64  GITDEFLKDK 73
                     
Sbjct: 118 EHHGNSESHP 127


>gi|57242277|ref|ZP_00370216.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis RM3195]
 gi|57016957|gb|EAL53739.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis RM3195]
          Length = 260

 Score = 43.0 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIE+TG    + +I+EIGAV++ ++ + +R F+ F+     +      KL GI    +
Sbjct: 74  IVDIESTGG-INSGQILEIGAVKIQNHKELDR-FESFVK--VDEIPLNITKLTGIELNMV 129

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD P+ + +   F       ++ ++AHN KFD  FI+  L       L   +I       
Sbjct: 130 KDAPNLTRVLEAF--RLFLNDSVFVAHNVKFDYNFISKSLYECGFGILLNRKICTVDFAQ 187

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                S              +I HR+ + AL  + +      K+
Sbjct: 188 CCIQSSHYKLDTLKEILKIESIHHRALNDALAAAEIFKYCLSKL 231


>gi|317402939|gb|EFV83479.1| oligoribonuclease [Achromobacter xylosoxidans C54]
          Length = 181

 Score = 43.0 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 5  NKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          N+ R +  D+E TGLD + +RIIE+  V
Sbjct: 4  NENRLVWLDMEMTGLDPEKERIIEVAVV 31


>gi|224096223|ref|XP_002310581.1| predicted protein [Populus trichocarpa]
 gi|222853484|gb|EEE91031.1| predicted protein [Populus trichocarpa]
          Length = 231

 Score = 43.0 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 10 IVFDIETTGLDSKND--RIIEIGAVELLDYSKTN-RTFQVFLCPNG 52
          +VFD+ETT  +      R++E GA+ +         ++   + P  
Sbjct: 15 VVFDLETTVPNRAGQRFRVLEFGAITVCPRKLVELDSYSTLIRPKD 60


>gi|41152197|ref|NP_957038.1| oligoribonuclease, mitochondrial [Danio rerio]
 gi|37590357|gb|AAH59540.1| Small fragment nuclease [Danio rerio]
          Length = 199

 Score = 43.0 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 1/67 (1%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
          M +    R +  D+E TGLD + D+IIE+  +    D +       + +          +
Sbjct: 1  MSQTQAQRMVWVDLEMTGLDIEKDQIIEMACIVTDSDLNVIAEGPNLIINQPDDLLDGMS 60

Query: 60 LKLHGIT 66
                 
Sbjct: 61 DWCKEHH 67


>gi|293604208|ref|ZP_06686616.1| oligoribonuclease [Achromobacter piechaudii ATCC 43553]
 gi|292817433|gb|EFF76506.1| oligoribonuclease [Achromobacter piechaudii ATCC 43553]
          Length = 181

 Score = 43.0 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 5  NKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          N+ R +  D+E TGLD + +RIIE+  V
Sbjct: 4  NENRLVWLDMEMTGLDPEKERIIEVAVV 31


>gi|323360067|ref|YP_004226463.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
          StLB037]
 gi|323276438|dbj|BAJ76583.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
          StLB037]
          Length = 224

 Score = 43.0 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 11 VFDIETTGLDSKNDRIIE--IGAVELLDYSKTNRTF 44
          VFD+ETTG+D  NDRI+   +G ++   +    R +
Sbjct: 3  VFDLETTGVDVVNDRIVTAHVGVLDADGHVIDARDW 38


>gi|302823961|ref|XP_002993628.1| hypothetical protein SELMODRAFT_48207 [Selaginella
          moellendorffii]
 gi|300138556|gb|EFJ05320.1| hypothetical protein SELMODRAFT_48207 [Selaginella
          moellendorffii]
          Length = 175

 Score = 43.0 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 13/98 (13%)

Query: 9  KIVF-DIETT-----GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNG-RKNSPEAL 60
          +IVF D+ETT     G   +   I+E GAV +         +F   + P+     SP ++
Sbjct: 1  EIVFYDVETTVPEVKG---QGYEILEFGAVVVSARGLEELDSFTTLVRPSSLALVSPRSV 57

Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98
            +GI  + L   PSF  I        +     W  HN
Sbjct: 58 SCNGIVQDSLVGAPSFLEIADRVHALLHG--RVWAGHN 93


>gi|288940627|ref|YP_003442867.1| Exonuclease RNase T and DNA polymerase III [Allochromatium
          vinosum DSM 180]
 gi|288895999|gb|ADC61835.1| Exonuclease RNase T and DNA polymerase III [Allochromatium
          vinosum DSM 180]
          Length = 187

 Score = 43.0 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + K++   I  D+E TGLD  +DRI+EI 
Sbjct: 6  MSKSEHNLIWIDLEMTGLDPDHDRILEIA 34


>gi|138896523|ref|YP_001126976.1| sporulation inhibitor KapD [Geobacillus thermodenitrificans NG80-2]
 gi|134268036|gb|ABO68231.1| Sporulation inhibitor KapD [Geobacillus thermodenitrificans NG80-2]
          Length = 207

 Score = 43.0 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 50/191 (26%), Gaps = 19/191 (9%)

Query: 9   KIVFDIE-------TT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPE 58
            +  D E       TT  G   +   IIE+G V ++D    ++ F  ++ P      +  
Sbjct: 7   YLFLDFEFTMPETKTTPNGFSPE---IIEVGLVAVVDEQIVSQ-FSSYVKPLRFPQLTDR 62

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                 IT E +    SF  + S    +  E+    +                   + P 
Sbjct: 63  CKSFLNITQEQIDSGMSFYELVSLLRQYDRERPTTVVTWGNMDMKVLRENCQSARVEFPF 122

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT-----ISHRSKHGALLDSHLLSDVYIK 173
                   +   R     ++  L    + YG                      L +   K
Sbjct: 123 TGEHRDLAMEYKRFFGNKNQTALRKAVQEYGNEGIGKAHCALDDAFTAYTIFRLIENDKK 182

Query: 174 MMVGGSQINFG 184
            +        G
Sbjct: 183 YLAKTKPPTIG 193


>gi|71281793|ref|YP_271594.1| exonuclase [Colwellia psychrerythraea 34H]
 gi|71147533|gb|AAZ28006.1| exonuclase [Colwellia psychrerythraea 34H]
          Length = 228

 Score = 43.0 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLC 49
            D ETTGL++K D+++ +G + L     + +T +   + 
Sbjct: 46 AVDFETTGLNAKQDKLLSVGFLTLKKQQMSLKTSYHQIIK 85


>gi|332083162|gb|EGI88393.1| exonuclease family protein [Shigella boydii 5216-82]
          Length = 181

 Score = 43.0 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPELDRIIEIA 29


>gi|312864644|ref|ZP_07724875.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei
           F0415]
 gi|311099771|gb|EFQ57984.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei
           F0415]
          Length = 823

 Score = 43.0 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  V D+E T       +II++G V +       +T+Q  + P+        + L GITD
Sbjct: 9   KYAVVDLEATSAS-TTAQIIQVGIVIVEQGQIV-QTYQTDVNPHEALT-QHIIDLTGITD 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
           + L   P FS +  + +    +    ++AHN KFD  
Sbjct: 66  QQLAQAPDFSQVAGDIFQLIQD--CIFVAHNVKFDAN 100


>gi|311104954|ref|YP_003977807.1| oligoribonuclease [Achromobacter xylosoxidans A8]
 gi|310759643|gb|ADP15092.1| oligoribonuclease [Achromobacter xylosoxidans A8]
          Length = 181

 Score = 43.0 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 5  NKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          N+ R +  D+E TGLD + +RIIE+  V
Sbjct: 4  NENRLVWLDMEMTGLDPEKERIIEVAVV 31


>gi|167626316|ref|YP_001676816.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596317|gb|ABZ86315.1| Exodeoxyribonuclease I [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 482

 Score = 43.0 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 44/167 (26%), Gaps = 4/167 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEA 59
           M +      + +D ETTG+++  D++++  A+           F  F+  N      P A
Sbjct: 1   MFQNQT--FLFYDSETTGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPIA 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
              H I+        S      +     N      I +N               N  P  
Sbjct: 59  TITHHISIAQANTGVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPY 118

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +  +  S A    P                     +    +   L
Sbjct: 119 SHQFKNGCSRADL-FPIVTCYYLFCNDVLKWPKVLDEEGQPKISLKL 164


>gi|227833883|ref|YP_002835590.1| putative oligoribonuclease [Corynebacterium aurimucosum ATCC
          700975]
 gi|227454899|gb|ACP33652.1| putative oligoribonuclease [Corynebacterium aurimucosum ATCC
          700975]
          Length = 210

 Score = 43.0 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD K   I+E+ AV
Sbjct: 10 RLVWIDLEMTGLDPKRHVIVEVAAV 34


>gi|222629868|gb|EEE62000.1| hypothetical protein OsJ_16781 [Oryza sativa Japonica Group]
          Length = 252

 Score = 43.0 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPE 58
           +R+ +M  + FD+ETT   +   +  ++E GA+ +         ++   + P     S  
Sbjct: 1   MRRPEM--VFFDVETTAASADEGQRSVLEFGAIVVCPRRLVEVDSYHTVIRPG--DMSAV 56

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           + +   + D  +   PSF  +    +   +     W  HN +     
Sbjct: 57  SKRFAAMVDVDVASAPSFDQVAERIFGVLDG--RVWAGHNIQRFDCH 101


>gi|51013461|gb|AAT93024.1| YLR059C [Saccharomyces cerevisiae]
          Length = 269

 Score = 43.0 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 8/63 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLCPNGRKNSPEALKLH 63
            D E TGLD  NDRIIEI  +    +         + +  ++  +       +       
Sbjct: 58  IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCI 117

Query: 64  GIT 66
              
Sbjct: 118 EHH 120


>gi|153879658|ref|ZP_02004868.1| exonuclease [Beggiatoa sp. PS]
 gi|152063878|gb|EDN65132.1| exonuclease [Beggiatoa sp. PS]
          Length = 65

 Score = 43.0 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
          D ETTGLD  N  I+EI  ++  + +         + P  +    E + +HGITD+ +K 
Sbjct: 2  DTETTGLD-DNAEIVEIAIIDKEERTLI----NQLVKP-TQPIPNEVIGIHGITDDEVKK 55

Query: 73 KPSFSSIFS 81
           P+F +++ 
Sbjct: 56 APTFKTVWP 64


>gi|311894879|dbj|BAJ27287.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 257

 Score = 43.0 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
          FD ETTG+D + DRI+    V
Sbjct: 15 FDTETTGVDVERDRIVSAALV 35


>gi|262184889|ref|ZP_06044310.1| oligoribonuclease [Corynebacterium aurimucosum ATCC 700975]
          Length = 214

 Score = 43.0 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD K   I+E+ AV
Sbjct: 14 RLVWIDLEMTGLDPKRHVIVEVAAV 38


>gi|217970407|ref|YP_002355641.1| oligoribonuclease [Thauera sp. MZ1T]
 gi|217507734|gb|ACK54745.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
          Length = 182

 Score = 43.0 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+   DRIIEI  V
Sbjct: 11 LDMEMTGLEPDRDRIIEIAIV 31


>gi|297528923|ref|YP_003670198.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp. C56-T3]
 gi|297252175|gb|ADI25621.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp. C56-T3]
          Length = 206

 Score = 43.0 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 49/188 (26%), Gaps = 13/188 (6%)

Query: 9   KIVFDIE-T---TGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALK 61
            +  D E T   T  +       IIE+G V ++D     + F  ++ P      +     
Sbjct: 6   YLFLDFEFTMPETKTNPNGFCPEIIEVGLVAVVDDQIIGQ-FSSYVKPLRFPQLTERCKS 64

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
              IT E +    SF  + S    +  ++    +   +               + P    
Sbjct: 65  FLNITQEQIDRGMSFYELVSLLRQYDRDRPTTVMTWGSMDMKVLRENCQSAQVEFPFTGE 124

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-----ISHRSKHGALLDSHLLSDVYIKMMV 176
                +   R     ++  L    + YG                      L +   K + 
Sbjct: 125 HRDLAMEYKRFFGNKNQTALRKAVQEYGNEAVGKAHCALDDAFTAYTIFRLVENDKKYLA 184

Query: 177 GGSQINFG 184
                  G
Sbjct: 185 KTKPPTIG 192


>gi|332678483|gb|AEE87612.1| Exodeoxyribonuclease I [Francisella cf. novicida Fx1]
          Length = 482

 Score = 43.0 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 41/155 (26%), Gaps = 2/155 (1%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71
           D+ET+G+++  D++++  A+           F  F+  N      P A   H I+     
Sbjct: 11  DLETSGINNSFDQVLQFAAIRTDFDFNEIERFNFFVKLNPDTTPSPMATITHHISIAQAN 70

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
              +      +     N      I +N               N  P    +  +  S A 
Sbjct: 71  TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKNGCSRAD 130

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
              P          +      +            L
Sbjct: 131 L-FPIVTCYYLFCNEVLNWPKAIDEDGQEKTSLKL 164


>gi|294461520|gb|ADE76321.1| unknown [Picea sitchensis]
          Length = 436

 Score = 43.0 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 52/188 (27%), Gaps = 16/188 (8%)

Query: 9   KIVFDIETT---G--LDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKN-SPEAL 60
            +V D E T   G  L  +   IIE  +V +           F  ++ P      +    
Sbjct: 144 FVVIDFEATCDMGTRLSPQ--EIIEFPSVLVNGMTGRLEG-HFHTYIKPVYHPVLTDFCK 200

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GI    +    S S       ++  E+  +           +    +     +    
Sbjct: 201 ELTGIQQSQVIGGVSLSEALLMHDNWLEERGVKNTNFAVVTWSDWDCKVMLESECNLKGI 260

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGIT-----ISHRSKHGALLDSHLLSDVYIKMM 175
            +          K P   +     C   G             H  L D+   + + + +M
Sbjct: 261 RKPNYFNRWINLKLPFYDSFGQLRCNLKGAVEFAGLTWEGRAHSGLDDAKNTARLLLDLM 320

Query: 176 VGGSQINF 183
             G ++  
Sbjct: 321 RRGIKLTI 328


>gi|194434740|ref|ZP_03066992.1| oligoribonuclease [Shigella dysenteriae 1012]
 gi|194417021|gb|EDX33138.1| oligoribonuclease [Shigella dysenteriae 1012]
 gi|320180678|gb|EFW55605.1| 3'-to-5' oligoribonuclease (orn) [Shigella boydii ATCC 9905]
 gi|332083629|gb|EGI88847.1| exonuclease family protein [Shigella dysenteriae 155-74]
          Length = 181

 Score = 43.0 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPELDRIIEIA 29


>gi|304437027|ref|ZP_07396990.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369978|gb|EFM23640.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 180

 Score = 43.0 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 8/170 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFD ETTG  S  D ++ +  V  +  +  +  +     P  +   P+A +++ I+ 
Sbjct: 4   KVLVFDTETTGFRSD-DEVLTLAVVNGVGETMVDGMYA----PARKAEWPDAERINRISP 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT- 126
             +       +   E    FN  +   + +N +FD+  +     RI         +  + 
Sbjct: 59  AMVAGCDPILAHREELERLFNAPDTLLVGYNTEFDIRLLAQSGIRITNPNRHDVMLAFSA 118

Query: 127 --LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  R+       L      Y     +   HGAL D+      Y KM
Sbjct: 119 FRKVPDARRGGYRWWKLTECADYYRYDWGNTVAHGALADTLATLFCYQKM 168


>gi|88703768|ref|ZP_01101484.1| DNA polymerase III, epsilon subunit [Congregibacter litoralis KT71]
 gi|88702482|gb|EAQ99585.1| DNA polymerase III, epsilon subunit [Congregibacter litoralis KT71]
          Length = 203

 Score = 43.0 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 9   KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            IV D ETTGL  +N    I+ +G + ++   +  ++ +    P  R  S EA  +HGIT
Sbjct: 18  YIVLDTETTGLPDENGLPDIVTLG-ITVVRQREIAKSVEFKTRPKKR-ISEEAQSIHGIT 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           +E   +  SF S +S   ++  +     + HNA FD   +   
Sbjct: 76  NEQAAEFKSFDSQWSHMAEYLKD--QLIVIHNASFDWPILRDH 116


>gi|46105698|ref|XP_380564.1| hypothetical protein FG00388.1 [Gibberella zeae PH-1]
          Length = 215

 Score = 43.0 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 16/57 (28%), Gaps = 2/57 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD  ND IIEI  +             F   +     +            
Sbjct: 24 IDCEMTGLDQDNDEIIEIYCIITTGNLEILDEEGFHAIIHFPQSRLDQMDEWCTKTH 80


>gi|311741236|ref|ZP_07715060.1| oligoribonuclease [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303406|gb|EFQ79485.1| oligoribonuclease [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 215

 Score = 43.0 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD +   I+E+ AV
Sbjct: 15 RLVWIDLEMTGLDPERHVIVEVAAV 39


>gi|312092765|ref|XP_003147452.1| exonuclease [Loa loa]
 gi|307757384|gb|EFO16618.1| exonuclease [Loa loa]
          Length = 401

 Score = 43.0 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 60/230 (26%), Gaps = 22/230 (9%)

Query: 9   KIVFDIETTG---LDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D E T    L   N  IIE  A+ +     +    F  ++ P      S       
Sbjct: 150 FVVIDFECTCEADLYDYNHEIIEFPAILVDVRKKEIVDVFHSYVRPLANPQLSEFCSAFT 209

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E +     F  +   F  +                   +           +     
Sbjct: 210 GITQEMVDKALPFIDVLDSFRAWMQLH---------HLGQKEVRYAFVTDGPWDIAKFFQ 260

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +  +       P       ++ + +      +     +  S +L    + M   G + + 
Sbjct: 261 MQCIQSKLNPIPHDFRFYVNVRRSFANKYCKKHPTQKINLSRML--TSLNMKFEGREHS- 317

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
               ++ +   +    +       R      RI   E     K +  + K
Sbjct: 318 --GLDDSKNIAKIVIRMLGDKSELRVNEKLVRIKDGEKA---KLLPDMNK 362


>gi|83647672|ref|YP_436107.1| ribonuclease T [Hahella chejuensis KCTC 2396]
 gi|123531538|sp|Q2SCE2|RNT_HAHCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|83635715|gb|ABC31682.1| ribonuclease T [Hahella chejuensis KCTC 2396]
          Length = 218

 Score = 43.0 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 62/200 (31%), Gaps = 25/200 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +V D+ET G +SK D ++E+ AV +    D             P      P A       
Sbjct: 22  VVVDVETAGFNSKTDALLEVSAVIISMEDDGMLYPEP------PVSFNVEPFAGANIEQA 75

Query: 67  DEFLKDKPSFSSIFSEFWD----------------FFNEQNAEWIAHNAKFDVGFINAEL 110
                    F+ +     +                      A  + HNA FD  F+ A  
Sbjct: 76  ALEFTGIDPFNPLRDAKPEADALNELFRPIRKSVKSNGCNRAILVGHNATFDHSFLFAAA 135

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +R +             +            L+  C+  GI   ++  H A  D+   +++
Sbjct: 136 ERGDVKRNPFHPFSTFDTATLAALAYGHTVLSRACQLAGIPFDNKEAHSAEYDAMKTAEL 195

Query: 171 YIKMMVGGSQINFGFKTNED 190
           +  ++    ++       +D
Sbjct: 196 FCSIVNRWKELGGWTTDQQD 215


>gi|323143315|ref|ZP_08078006.1| ribonuclease T [Succinatimonas hippei YIT 12066]
 gi|322416932|gb|EFY07575.1| ribonuclease T [Succinatimonas hippei YIT 12066]
          Length = 251

 Score = 42.6 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 43/164 (26%), Gaps = 17/164 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRK----NSPEALKL 62
           +V D+ET G + + D ++E+  + +    +          +L P+              +
Sbjct: 33  VVVDVETAGFNPETDALLEVAMMTMTMDDNG---------YLQPDEIMSANIRPFPNSNI 83

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                 FL   P F    +   +                  G   A L   N        
Sbjct: 84  EPSNIAFLGIDP-FDESRNLQDERVAVLPMFKAISKKMKKEGCTRAILVGHNGFFDLSFI 142

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
                 +  ++ P  +  +       G+         A   + +
Sbjct: 143 HALAKRLNYKRCPFHQFTVFDTASLAGLVYGQTVLARACTAAGI 186


>gi|149198226|ref|ZP_01875273.1| oligoribonuclease [Lentisphaera araneosa HTCC2155]
 gi|149138828|gb|EDM27234.1| oligoribonuclease [Lentisphaera araneosa HTCC2155]
          Length = 182

 Score = 42.6 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 16/55 (29%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           D+E TGLD   +RI+EI  +           F   +                  
Sbjct: 7  IDMEMTGLDPDENRILEIAILITDHKLDIIDRFHAVIRTPKAILDGMDEWNTRTH 61


>gi|126334116|ref|XP_001366655.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 696

 Score = 42.6 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 61/219 (27%), Gaps = 26/219 (11%)

Query: 10  IVFDIETT----GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGR----KNSPEAL 60
           I+ D E+T    G    +  IIE  AV L     +    FQ ++ P       K   E  
Sbjct: 39  IIIDFESTCWNDGKHHYSQEIIEFPAVLLNTLTGEIESEFQTYVQPEEHPILSKFCIELT 98

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +     +         S F ++     +Q     A +   +          +     D 
Sbjct: 99  GIKQAQVDEGVPLKICLSQFCKWIHLIQQQKKITFAPSITNNSASEVKSCAFVTWSDWDL 158

Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              ++      + + P   N    L   Y +    + K                +     
Sbjct: 159 GVCLEYECRRKQLRKPIFLNSWIDLRATYKLFYRRKPKG---------------LSGALQ 203

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
           ++   F   E     + + T      + RD     +ITK
Sbjct: 204 ELGIEFSGREHSGLDDSRNTAHLAWRMIRDGC-IMKITK 241


>gi|241205541|ref|YP_002976637.1| exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240859431|gb|ACS57098.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 199

 Score = 42.6 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 5/149 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D ET   + +      +G   + D   T R  +  + P   + S   + +HGI  
Sbjct: 5   KTIAIDFET--ANEQRGSACSVGLAWIEDGRVT-RVEERLIRPREMRFSGMNIAIHGIRP 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++D P F  +  EF +  +       AHNA FD     A L    +   + + +    
Sbjct: 62  EHVEDAPEFPEVMDEFHEDISGATMI--AHNAAFDFSVWRASLDLYRQSYPELTYLCSLK 119

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRS 156
              R       + LN + +  G+   H +
Sbjct: 120 MAQRIWPHFLSHRLNLIAEHLGLRFVHHN 148


>gi|227503970|ref|ZP_03934019.1| oligoribonuclease [Corynebacterium striatum ATCC 6940]
 gi|227199438|gb|EEI79486.1| oligoribonuclease [Corynebacterium striatum ATCC 6940]
          Length = 210

 Score = 42.6 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNR 42
          R +  D+E TGLD K   I+E+ A+    + +    
Sbjct: 10 RLVWIDLEMTGLDPKRHVIVEVAAIITDGNLNVIGE 45


>gi|6323088|ref|NP_013160.1| Rex2p [Saccharomyces cerevisiae S288c]
 gi|1730818|sp|P54964|ORN_YEAST RecName: Full=Oligoribonuclease, mitochondrial; Flags: Precursor
 gi|1181280|emb|CAA64306.1| Ynt20 protein [Saccharomyces cerevisiae]
 gi|1360404|emb|CAA97590.1| YNT20 [Saccharomyces cerevisiae]
 gi|285813481|tpg|DAA09377.1| TPA: Rex2p [Saccharomyces cerevisiae S288c]
          Length = 269

 Score = 42.6 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 8/63 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLCPNGRKNSPEALKLH 63
            D E TGLD  NDRIIEI  +    +         + +  ++  +       +       
Sbjct: 58  IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCI 117

Query: 64  GIT 66
              
Sbjct: 118 EHH 120


>gi|313892527|ref|ZP_07826115.1| exonuclease [Dialister microaerophilus UPII 345-E]
 gi|313119055|gb|EFR42259.1| exonuclease [Dialister microaerophilus UPII 345-E]
          Length = 195

 Score = 42.6 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 5/150 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+    D ET     K +    +G V       T+  +   + P       E ++++GI 
Sbjct: 1   MKYTAIDFETA-FWGKGNA-CSLGIVISDGSKLTDEWYD-LIRPVHLNFDEECIRVNGIH 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +KDKP F   + +     N       AHNA FD G +   + R     ++       
Sbjct: 58  PEDVKDKPEFPYYWDKISGLLNG--TVAFAHNAPFDFGVLANTIDRYELPDINFCWGDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156
                       + LN++ +      +H  
Sbjct: 116 EISRILWKKLPNHKLNTVAEFLNFEFNHHQ 145


>gi|53805219|ref|YP_113058.1| oligoribonuclease [Methylococcus capsulatus str. Bath]
 gi|59798004|sp|Q60BD8|ORN_METCA RecName: Full=Oligoribonuclease
 gi|53758980|gb|AAU93271.1| oligoribonuclease [Methylococcus capsulatus str. Bath]
          Length = 181

 Score = 42.6 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLD 36
           D+E TGLD +ND IIEI  +    
Sbjct: 11 IDLEMTGLDPQNDAIIEIATIVTDG 35


>gi|315652211|ref|ZP_07905206.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315485517|gb|EFU75904.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 339

 Score = 42.6 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 45/184 (24%), Gaps = 17/184 (9%)

Query: 8   RKIVFDIE----TTGL-DSKND---RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
             IV D+E      G   S  D    IIEIGA++L    +T   F   + P   K     
Sbjct: 11  NYIVLDLEWNQSPNGREHSNKDLPFEIIEIGAIKLNSRLETVDEFHRVIKPTVYKKIHFK 70

Query: 60  LKL---------HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           +                 F+     F            +    W   +       +    
Sbjct: 71  VHEVVQIGIWELKKKGVPFVDAINDFFEFCEMDNKQKKKILCTWGNLDLVELQRNMKFYN 130

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                +       +  L   + ++                    R  H A  D+     V
Sbjct: 131 VENKFEYPFFYYDLQKLFNIKFQNAQQERIPLERAVNMLNIEVERPFHHAFDDACYTVKV 190

Query: 171 YIKM 174
             +M
Sbjct: 191 MQRM 194


>gi|227503021|ref|ZP_03933070.1| oligoribonuclease [Corynebacterium accolens ATCC 49725]
 gi|227076082|gb|EEI14045.1| oligoribonuclease [Corynebacterium accolens ATCC 49725]
          Length = 213

 Score = 42.6 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD +   I+E+ AV
Sbjct: 15 RLVWIDLEMTGLDPERHVIVEVAAV 39


>gi|51245369|ref|YP_065253.1| hypothetical protein DP1517 [Desulfotalea psychrophila LSv54]
 gi|50876406|emb|CAG36246.1| unknown protein [Desulfotalea psychrophila LSv54]
          Length = 188

 Score = 42.6 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 49/158 (31%), Gaps = 7/158 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC----PNGRKNSP--EALKLH 63
           + DIETT    +   I+E+G V L  +   T   F             +  P     K  
Sbjct: 7   IIDIETTNFLKEGGSIVEVGMVALDLESGVTKIIFDSLCREKILTGRHREPPFGWIFKNS 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            +T E +++ P F S+ +E     N       A+N  FD  F+ +      K    P  +
Sbjct: 67  DLTVEEVREAPDFDSLRAEIQSIINAYPLGATAYNRSFDFDFLESRSLSFPKKLPCPMLL 126

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +      +         + + +             
Sbjct: 127 CTDICKIPSPYRYKDYKWPKVEEAWDYFFPDHPYDEKH 164


>gi|167842269|ref|ZP_02468953.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
           thailandensis MSMB43]
          Length = 292

 Score = 42.6 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D ETTGLD +   I+EI  ++              + P       +A  +HGITD  +
Sbjct: 131 FIDTETTGLDFQ-AEIVEIAILDRAGALL----LDTLVKP-AMPIPADATAIHGITDAHV 184

Query: 71  KDKPSFSSIFSEFWDFFNEQNAE 93
              P ++S+  +  +    +   
Sbjct: 185 AGAPGWASVGPQVAELLAGRLWI 207


>gi|124268531|ref|YP_001022535.1| exonuclease [Methylibium petroleiphilum PM1]
 gi|124261306|gb|ABM96300.1| exonuclease [Methylibium petroleiphilum PM1]
          Length = 233

 Score = 42.6 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 61/180 (33%), Gaps = 15/180 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL------------LDYSKTNRTFQVFLCPNGRKN 55
           R IV D+E+ GLD + D ++ I AV +                     F++ L P+G  +
Sbjct: 27  RWIVADVESGGLDPRRDPLLAIAAVGVHFAPVQGERGGRRPRIVLGDRFELLLRPSGAPS 86

Query: 56  -SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            SP+   +          +       +          +  +  ++ FD   I    +   
Sbjct: 87  ASPDKANILVHGIGIGAQRAGLDPAEALQAWESYIGRSPLVGFHSAFDRTLIERAGRDAL 146

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               D   +      A       +  L+     +GIT    ++H A  D+   + + +K+
Sbjct: 147 GRAPDNPWLDLEHLAAVLHREPRQRSLDDWLAHHGITC--LARHQASADALATAQLLLKL 204


>gi|295840123|ref|ZP_06827056.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
 gi|197696983|gb|EDY43916.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
          Length = 243

 Score = 42.6 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
          +  +K R   FDIE+TG+D +  RI+    V  +       T      P+      
Sbjct: 1  MTWHKQRYCAFDIESTGVDVETARIVT-ACVAQVRGGALPETRSWLADPSIEIPDE 55


>gi|729197|sp|P41060|CP81_BP186 RecName: Full=Uncharacterized exonuclease CP81
 gi|3337284|gb|AAC34183.1| Orf81 [Enterobacteria phage 186]
          Length = 194

 Score = 42.6 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 48/144 (33%), Gaps = 12/144 (8%)

Query: 10  IVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           I  D ETTGL    D   I+EI  ++   +          + P  +    EA  +HGITD
Sbjct: 21  IFIDTETTGL---GDDAEIVEICLIDSAGFIM----LNTLVKP-TKPIPAEATAIHGITD 72

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +   P++  I       F E       +NA +D   I    +    +       ++  
Sbjct: 73  EMVMYAPTWKDIHGAVASLFFEYGFV--IYNADYDTRLIYQTAKLYGLENDGFCYFLNER 130

Query: 128 SIARRKHPSSRNDLNSLCKRYGIT 151
           S       +         K Y   
Sbjct: 131 SACAMMLYAEYRGEPGRFKGYKWH 154


>gi|269123524|ref|YP_003306101.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus
           moniliformis DSM 12112]
 gi|268314850|gb|ACZ01224.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus
           moniliformis DSM 12112]
          Length = 205

 Score = 42.6 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 18/195 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT------NRTFQVFLCPNGRK 54
           MI+    + I FD+ET G++   D ++ I A+++   + T          + +    G +
Sbjct: 1   MIK----KVIFFDVETNGVNP-TDSVLSISAMKVTYDTITNKMVKLGEFDRFYFRNEGEE 55

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            + +AL ++G+ D+ ++ + + S I        +  N      NA+  V       ++  
Sbjct: 56  PNFDALNVNGLFDDEIERRRNLSLIKYAKTFNEDIVNFFEFCDNAEHFVAHNIRFDRQFI 115

Query: 115 KDPLDPSRIIDTLSIARRKHP-------SSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              L         +I   K P            L      Y I +     H ++ D  ++
Sbjct: 116 PFKLKYQFDTMLENIDIVKIPSNSYYSSFKWPKLMECANYYNIPVDENELHNSMYDVVIM 175

Query: 168 SDVYIKMMVGGSQIN 182
             V  KM+     + 
Sbjct: 176 GRVMFKMLKDNEGLK 190


>gi|255324289|ref|ZP_05365410.1| oligoribonuclease [Corynebacterium tuberculostearicum SK141]
 gi|255298619|gb|EET77915.1| oligoribonuclease [Corynebacterium tuberculostearicum SK141]
          Length = 215

 Score = 42.6 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD +   I+E+ AV
Sbjct: 15 RLVWIDLEMTGLDPERHVIVEVAAV 39


>gi|229588692|ref|YP_002870811.1| ribonuclease T [Pseudomonas fluorescens SBW25]
 gi|229360558|emb|CAY47415.1| ribonuclease T [Pseudomonas fluorescens SBW25]
          Length = 223

 Score = 42.6 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 66/193 (34%), Gaps = 13/193 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVF-LCP-NGRKNSPEALKLHG 64
           +V D+ET G +   D ++EI A  +               F + P  G      AL+  G
Sbjct: 31  VVIDVETGGFNCATDALLEIAATTIGMDEQGFVFPEHTHFFRVEPFEGANIEAAALEFTG 90

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +       + A  + HN+ FD+GF+NA + R++  
Sbjct: 91  IKLDHPLRMAVSEEAALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 150

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    R  H A  D+   ++++  ++ 
Sbjct: 151 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 210

Query: 177 GGSQINFGFKTNE 189
              Q+      N+
Sbjct: 211 RWKQMGGWEDFND 223


>gi|332638341|ref|ZP_08417204.1| DNA polymerase III subunit alpha [Weissella cibaria KACC 11862]
          Length = 183

 Score = 42.6 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEALKLHGIT 66
           +VFD+E  G    +++IIEIGA+++       + F V +   P G   +        + 
Sbjct: 9  YVVFDLEMNG----SNQIIEIGALKITTGKDIEK-FSVIVNNPPKGSGMASFKFISQSMG 63

Query: 67 DEFLK 71
           E   
Sbjct: 64 GEHGW 68


>gi|290477090|ref|YP_003470002.1| oligoribonuclease [Xenorhabdus bovienii SS-2004]
 gi|289176435|emb|CBJ83244.1| oligoribonuclease [Xenorhabdus bovienii SS-2004]
          Length = 181

 Score = 42.6 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+ + DRIIEI 
Sbjct: 11 IDLEMTGLEPERDRIIEIA 29


>gi|227484960|ref|ZP_03915276.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
          51172]
 gi|227237115|gb|EEI87130.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
          51172]
          Length = 302

 Score = 42.6 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 23/29 (79%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDY 37
          ++V DIETTGLD +ND+++ +G V++ + 
Sbjct: 17 ELVLDIETTGLDFRNDKLVLLGLVKIEND 45


>gi|218288682|ref|ZP_03492945.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
          acidocaldarius LAA1]
 gi|218241040|gb|EED08216.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
          acidocaldarius LAA1]
          Length = 218

 Score = 42.6 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61
          V D+ET+G     D+I+ +         S+ + +F   +  +   + P  + 
Sbjct: 32 VLDLETSGFSPARDKILSVACATFSGWSSEPDESFYAVVRHDDVADVPSHIW 83


>gi|254369135|ref|ZP_04985147.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122085|gb|EDO66225.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 482

 Score = 42.6 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 1/132 (0%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71
           D+ET+G+++  D++++  A+           F  F+  N      P A   H I+     
Sbjct: 11  DLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPMATITHHISIAQAN 70

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
              +      +     N      I +N       +       N  P    +  +  S A 
Sbjct: 71  TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDELLRFAFYKNMLPPYSHQFKNGCSRAD 130

Query: 132 RKHPSSRNDLNS 143
                +   L  
Sbjct: 131 LFPIVTCYYLFC 142


>gi|330811344|ref|YP_004355806.1| ribonuclease T [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379452|gb|AEA70802.1| Ribonuclease T [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 225

 Score = 42.6 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 13/193 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI A  +      +   + T+   + P  G      AL+  G
Sbjct: 33  VVVDVETGGFNSATDALLEIAATTIGMDEKGFVFPDHTYFFRVEPFEGANVEAAALEFTG 92

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +       + A  + HN+ FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 152

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+   I    R  H A  D+   ++++  ++ 
Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAADIDFDGREAHSARYDTEKTAELFCGIVN 212

Query: 177 GGSQINFGFKTNE 189
              ++      ++
Sbjct: 213 RWKEMGGWQDFDD 225


>gi|295698795|ref|YP_003603449.1| p12-11p [Pyrococcus sp. 12/1]
 gi|295126590|gb|ADF80218.1| p12-11p [Pyrococcus sp. 12/1]
          Length = 195

 Score = 42.6 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44
          ++ V D+ETTGL+ + D I+  G  +  +     R F
Sbjct: 42 KEAVLDLETTGLEPEWDEILSFGIAKDHEIKVYTRVF 78


>gi|240169372|ref|ZP_04748031.1| hypothetical protein MkanA1_08668 [Mycobacterium kansasii ATCC
           12478]
          Length = 1746

 Score = 42.6 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLD 36
           R  V DIETTGLDS  D + E+  V L  
Sbjct: 103 RIAVLDIETTGLDSAADFVCELALVGLDG 131


>gi|226326657|ref|ZP_03802175.1| hypothetical protein PROPEN_00510 [Proteus penneri ATCC 35198]
 gi|225204878|gb|EEG87232.1| hypothetical protein PROPEN_00510 [Proteus penneri ATCC 35198]
          Length = 181

 Score = 42.6 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DRIIEI 
Sbjct: 11 IDLEMTGLDPECDRIIEIA 29


>gi|306836747|ref|ZP_07469709.1| oligoribonuclease [Corynebacterium accolens ATCC 49726]
 gi|304567369|gb|EFM42972.1| oligoribonuclease [Corynebacterium accolens ATCC 49726]
          Length = 213

 Score = 42.6 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD +   I+E+ AV
Sbjct: 15 RLVWIDLEMTGLDPERHVIVEVAAV 39


>gi|256370678|ref|YP_003108503.1| putative bifunctional DNA polymerase III subunit alpha/DNA
           polymerase III subunit epsilon [Candidatus Sulcia
           muelleri SMDSEM]
 gi|256009470|gb|ACU52830.1| putative bifunctional DNA polymerase III, alpha subunit (DnaE)/DNA
           polymerase III, epsilon subunit (DnaQ) [Candidatus
           Sulcia muelleri SMDSEM]
          Length = 1406

 Score = 42.6 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 83/253 (32%), Gaps = 25/253 (9%)

Query: 9   KIVFDIETTGLDSKND-------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            I+FD ETTGL    +       R++ +      +  K        + P G +    + K
Sbjct: 2   YIIFDTETTGLPKNYNAPIINWPRLVRLSWCLYDENLKLIELKDYIIKPEGFEIPFNSTK 61

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI+ E   +K    +   E ++   + +   I HN  FD+  + AE  R+ K      
Sbjct: 62  IHGISTEEALEKGYKRNFVLEKFNIRIKNSKFLIGHNIYFDLKVLCAEFIRLKKIHYLYK 121

Query: 122 RIIDTLSIARRKHPSSRN-----DLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMM 175
           + I           + +         +L + Y          H +  D    S  + +++
Sbjct: 122 KKIIDTKEKSINFCAIKIGKGKLKWPTLTELYKKLFNDTFIAHDSKSDVLATSKCFFELL 181

Query: 176 VGG----SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT---- 227
             G      +N        +     K    N   L  +K LF +     +  H       
Sbjct: 182 RIGIISLKNVNKKLLKINIKKINLSKIQNFNFKKLNFEKKLFKKKYFSHIHNHTYFSILS 241

Query: 228 ----IQTLGKNAI 236
               I +L K  I
Sbjct: 242 STIDINSLIKKTI 254


>gi|227503895|ref|ZP_03933944.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC
          6940]
 gi|227199518|gb|EEI79566.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC
          6940]
          Length = 223

 Score = 42.6 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT 43
          R + FD+ETT ++ K  RI+    V +       R 
Sbjct: 7  RMLSFDLETTSVNPKEARIVTSALVRIDGRDVDKRE 42


>gi|261420373|ref|YP_003254055.1| sporulation inhibitor KapD [Geobacillus sp. Y412MC61]
 gi|319768041|ref|YP_004133542.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y412MC52]
 gi|261376830|gb|ACX79573.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y412MC61]
 gi|317112907|gb|ADU95399.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y412MC52]
          Length = 206

 Score = 42.6 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 49/188 (26%), Gaps = 13/188 (6%)

Query: 9   KIVFDIE-T---TGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALK 61
            +  D E T   T  +       IIE+G V ++D     + F  ++ P      +     
Sbjct: 6   YLFLDFEFTMPETKTNPNGFCPEIIEVGLVAVVDDQIIGQ-FSSYVKPLRFPQLTERCKS 64

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
              IT E +    SF  + S    +  ++    +   +               + P    
Sbjct: 65  FLNITQEQIDRGMSFYELVSLLRQYDRDRPTTVMTWGSMDMKVLRENCQSARVEFPFTGE 124

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-----ISHRSKHGALLDSHLLSDVYIKMMV 176
                +   R     ++  L    + YG                      L +   K + 
Sbjct: 125 HRDLAMEYKRFFGNKNQTALRKAVQEYGNEAVGKAHCALDDAFTAYTIFRLVENDKKYLA 184

Query: 177 GGSQINFG 184
                  G
Sbjct: 185 KTKPPTIG 192


>gi|254386752|ref|ZP_05002044.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
 gi|194345589|gb|EDX26555.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
          Length = 246

 Score = 42.6 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
          FD+ETTG +    RI+    VE+       R
Sbjct: 12 FDLETTGTEPGESRIVTAAVVEVRGGEVRER 42


>gi|151941228|gb|EDN59606.1| RNA exonuclease [Saccharomyces cerevisiae YJM789]
 gi|259148048|emb|CAY81297.1| Rex2p [Saccharomyces cerevisiae EC1118]
          Length = 269

 Score = 42.6 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 8/63 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLCPNGRKNSPEALKLH 63
            D E TGLD  NDRIIEI  +    +         + +  ++  +       +       
Sbjct: 58  IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCI 117

Query: 64  GIT 66
              
Sbjct: 118 EHH 120


>gi|285018424|ref|YP_003376135.1| oligoribonuclease [Xanthomonas albilineans GPE PC73]
 gi|283473642|emb|CBA16145.1| probable oligoribonuclease protein [Xanthomonas albilineans]
          Length = 190

 Score = 42.6 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 41/137 (29%), Gaps = 13/137 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I  D+E TGLD++ D IIEI  V       T+    V          PE    H +  
Sbjct: 10  RLIWIDLEMTGLDTERDSIIEIATV------VTDAQLNVL------AEGPEFAIAHPLQT 57

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
               D+ + +             +   +A      + F+    +         + I    
Sbjct: 58  LEAMDEWNRNQHRQSGLWQRVLDSQVGLAQAEAQTMAFLTQWCKPGASPM-CGNSICQDR 116

Query: 128 SIARRKHPSSRNDLNSL 144
               R+ P      +  
Sbjct: 117 RFLHRQMPRLERFFHYR 133


>gi|297733948|emb|CBI15195.3| unnamed protein product [Vitis vinifera]
          Length = 447

 Score = 42.6 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 12/95 (12%)

Query: 11  VFDIETT-----GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRK-NSPEALKLH 63
            FD+ETT     G   +   I+E GA+ +         ++   + P+     S  +++ +
Sbjct: 12  FFDVETTVPTRVG---QGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLVSSLSVRCN 68

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98
           GIT + +   P+F  I    +D  +     W  HN
Sbjct: 69  GITRDAVVSAPNFRDIADRVYDILHG--RIWAGHN 101


>gi|225457353|ref|XP_002281793.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 497

 Score = 42.6 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 12/95 (12%)

Query: 11  VFDIETT-----GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRK-NSPEALKLH 63
            FD+ETT     G   +   I+E GA+ +         ++   + P+     S  +++ +
Sbjct: 12  FFDVETTVPTRVG---QGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLVSSLSVRCN 68

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98
           GIT + +   P+F  I    +D  +     W  HN
Sbjct: 69  GITRDAVVSAPNFRDIADRVYDILHG--RIWAGHN 101


>gi|147817752|emb|CAN66660.1| hypothetical protein VITISV_031720 [Vitis vinifera]
          Length = 535

 Score = 42.6 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 12/95 (12%)

Query: 11  VFDIETT-----GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRK-NSPEALKLH 63
            FD+ETT     G   +   I+E GA+ +         ++   + P+     S  +++ +
Sbjct: 12  FFDVETTVPTRVG---QGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLVSSLSVRCN 68

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98
           GIT + +   P+F  I    +D  +     W  HN
Sbjct: 69  GITRDAVVSAPNFRDIADRVYDILHG--RIWAGHN 101


>gi|89256131|ref|YP_513493.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314604|ref|YP_763327.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502153|ref|YP_001428218.1| exonuclease [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167009834|ref|ZP_02274765.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367455|ref|ZP_04983481.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           257]
 gi|290953267|ref|ZP_06557888.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295313509|ref|ZP_06804104.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89143962|emb|CAJ79183.1| Exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129503|gb|ABI82690.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253271|gb|EBA52365.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           257]
 gi|156252756|gb|ABU61262.1| exonuclease [Francisella tularensis subsp. holarctica FTNF002-00]
          Length = 482

 Score = 42.6 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 1/132 (0%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71
           D+ET+G+++  D++++  A+           F  F+  N      P A   H I+     
Sbjct: 11  DLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPMATITHHISIAQAN 70

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
              +      +     N      I +N       +       N  P    +  +  S A 
Sbjct: 71  TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDELLRFAFYKNMLPPYSHQFKNGCSRAD 130

Query: 132 RKHPSSRNDLNS 143
                +   L  
Sbjct: 131 LFPIVTCYYLFC 142


>gi|227488247|ref|ZP_03918563.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091817|gb|EEI27129.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 203

 Score = 42.6 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          +     R +  D+E TGLD K   I+E  AV + D   T
Sbjct: 1  MSNKDNRIVWIDLEMTGLDPKRHVIVE-AAVHITDNDLT 38


>gi|310831493|ref|YP_003970136.1| putative helicase/exonuclease [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386677|gb|ADO67537.1| putative helicase/exonuclease [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 870

 Score = 42.6 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 58/177 (32%), Gaps = 17/177 (9%)

Query: 11  VFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           + D ETTGL  +            N R+IE+G +         + +   +  N + N   
Sbjct: 691 ILDTETTGLPKQRPFNPNNTSAYDNARMIELGYIIYNTKGDIIKKYNNLINHNIKIN--- 747

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
              +HGIT +    K        + +    ++    + HN  FD   +  E+ RI K  L
Sbjct: 748 NSFIHGITSDICSKKGLIIDDVLDTFYQDLKECDVLVCHNVDFDKNILLNEIYRIKKMEL 807

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY--GITISHRSKHGALLDSHLLSDVYIK 173
                  +     +K          L   Y      +    H AL D  +    + K
Sbjct: 808 YEHLNNKSTICTLKKTKELYGKRTKLSDWYKKNFNDNTIQNHRALDDVIMTGKCFFK 864


>gi|115351259|ref|YP_773098.1| exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria
           AMMD]
 gi|115281247|gb|ABI86764.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria
           AMMD]
          Length = 276

 Score = 42.6 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 56/220 (25%), Gaps = 20/220 (9%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA--VELLDY-----SKTNRTFQVFLCPNGRKNSPE 58
            M+  + D ETTG+ + +D  I IG   VE+         +  R +     P    +   
Sbjct: 19  HMKVAIIDTETTGV-AAHDEPISIGILLVEIEPGSGVLVQEIGR-YHGLREPCVPIHPKA 76

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL------QR 112
                    +          +   +      +    IAHNA+FD   +            
Sbjct: 77  QAVHGMTAADLSGK-----VLDLAWITSLINEADVLIAHNAQFDARMLAVVCDAGSAKSW 131

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                  P                            G   +  +           S  Y+
Sbjct: 132 RCSLQQFPWPAAVGRKKLDSVCEFYGVVKQLRHDALGDCQALLAVLLIHTGKTTRSRTYL 191

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
            +++  + +                +  P   +L+  +P+
Sbjct: 192 ALLLAKAPVVLDAAPQAAMGRSPAYQQPPAYRMLEPRQPV 231


>gi|256271847|gb|EEU06877.1| Rex2p [Saccharomyces cerevisiae JAY291]
          Length = 269

 Score = 42.6 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37
           D E TGLD  NDRIIEI  +    +
Sbjct: 58 IDCEMTGLDHVNDRIIEICCIITDGH 83


>gi|221132558|ref|XP_002167097.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 287

 Score = 42.6 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 11/187 (5%)

Query: 9   KIVFDIETTGLDSK----NDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKL 62
            +V D E T  +         IIE  AV +   + +    F  +  P      S     L
Sbjct: 97  YVVIDFEATCDEPNPSGFQHEIIEFPAVLVKTSTLEIVSEFHSYCRPVINPVLSEFCKSL 156

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-----AKFDVGFINAELQRINKDP 117
            GIT   ++    F  +   F  +  +Q                   F+  + + +N   
Sbjct: 157 TGITQVQVESSSVFEVVLQRFDKWLKQQVMPTETFCIATDGPWDLDRFLKNQCKTLNIQI 216

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                    +      +         L  ++         H  + D+  ++ + I+++  
Sbjct: 217 PHYFHRWVNIRKHFYNYYKINQANVELMLQHLGMEFEGRPHRGIDDARNIARILIQLIRD 276

Query: 178 GSQINFG 184
           G+     
Sbjct: 277 GADPLIN 283


>gi|116333325|ref|YP_794852.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus brevis ATCC 367]
 gi|116098672|gb|ABJ63821.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus brevis ATCC 367]
          Length = 178

 Score = 42.6 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 5/165 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET     K      +    + +    +  F   + P+        +++HGI 
Sbjct: 1   MNFVAMDFET--ASGKRYSACSLALTIVRNDQVVDE-FYSLIKPDT-DFFWRNVQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + + P+F     +    F +++   IAHNA FD G + + L+  N  P     +   
Sbjct: 57  ERDVANAPTF-PEVWQHVAPFFQRDRLVIAHNAPFDNGVLRSSLEHYNLPPARYLTLDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +  +       + L+++C    I + H         +     +Y
Sbjct: 116 KTSRKFFPEFPNHKLDTVCDELDIDLHHHHNALDDSLACANILLY 160


>gi|33519554|ref|NP_878386.1| oligoribonuclease [Candidatus Blochmannia floridanus]
 gi|77416670|sp|Q7VQP7|ORN_BLOFL RecName: Full=Oligoribonuclease
 gi|33517217|emb|CAD83599.1| oligoribonuclease [Candidatus Blochmannia floridanus]
          Length = 180

 Score = 42.6 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+ + DRI+EI 
Sbjct: 9  IDLEMTGLNPERDRILEIA 27


>gi|242086513|ref|XP_002439089.1| hypothetical protein SORBIDRAFT_09g000300 [Sorghum bicolor]
 gi|241944374|gb|EES17519.1| hypothetical protein SORBIDRAFT_09g000300 [Sorghum bicolor]
          Length = 319

 Score = 42.6 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 7  MRKIVF-DIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNG 52
          MR+IVF D+ETT       R  ++E GA+ +         ++   + P  
Sbjct: 8  MREIVFFDVETTAPTPAG-RWWLLEFGAILVCPRKLVEVASYDTLIRPGD 56


>gi|78777984|ref|YP_394299.1| exonuclease [Sulfurimonas denitrificans DSM 1251]
 gi|78498524|gb|ABB45064.1| Exonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 247

 Score = 42.6 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTF 44
          R I+ D ETTG+  + DR+I++G + L +   +    F
Sbjct: 4  RYIILDTETTGIG-EEDRVIQLGFIVLGEREIEVQNEF 40


>gi|56421469|ref|YP_148787.1| sporulation inhibitor KapD [Geobacillus kaustophilus HTA426]
 gi|56381311|dbj|BAD77219.1| inhibition of the KinA pathway to sporulation [Geobacillus
           kaustophilus HTA426]
          Length = 206

 Score = 42.6 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 49/188 (26%), Gaps = 13/188 (6%)

Query: 9   KIVFDIE-T---TGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALK 61
            +  D E T   T  +       IIE+G V ++D     + F  ++ P      +     
Sbjct: 6   YLFLDFEFTMPETKTNPNGFCPEIIEVGLVAVVDDQIIGQ-FSSYVKPLRFPQLTERCKS 64

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
              IT E +    SF  + S    +  E+    +   +               + P    
Sbjct: 65  FLNITQEQIDRGMSFYELVSLLRQYDRERPTTVMTWGSMDMKVLRENCQSAQVEFPFTGE 124

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-----ISHRSKHGALLDSHLLSDVYIKMMV 176
                +   R     ++  L    + YG                      L +   K + 
Sbjct: 125 HRDLAMEYKRFFGNKNQTALRKAVQEYGNEAVGKAHCALDDAFTAYTIFRLVENDKKYLA 184

Query: 177 GGSQINFG 184
                  G
Sbjct: 185 KTKPPTIG 192


>gi|323347541|gb|EGA81809.1| Rex2p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 217

 Score = 42.6 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37
           D E TGLD  NDRIIEI  +    +
Sbjct: 58 IDCEMTGLDHVNDRIIEICCIITDGH 83


>gi|229821534|ref|YP_002883060.1| Exonuclease RNase T and DNA polymerase III [Beutenbergia cavernae
          DSM 12333]
 gi|229567447|gb|ACQ81298.1| Exonuclease RNase T and DNA polymerase III [Beutenbergia cavernae
          DSM 12333]
          Length = 283

 Score = 42.6 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 6  KMRK-----IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
           MR      + FD ETTG+D  +DRI+    V         +     + P 
Sbjct: 4  HMRWTDGPLVGFDTETTGVDVAHDRIVTAALVVRHGLQGLPQERTWIIDPG 54


>gi|315656881|ref|ZP_07909768.1| conserved hypothetical protein [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
 gi|315492836|gb|EFU82440.1| conserved hypothetical protein [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
          Length = 240

 Score = 42.6 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
          FD ETTG+ +  DRI  +  +  ++ + + R +   + P       
Sbjct: 19 FDTETTGVFTSRDRIATVSLIRRINGTDSPRYW--IINPGVPMPPA 62


>gi|315655203|ref|ZP_07908104.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315490458|gb|EFU80082.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 240

 Score = 42.6 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
          FD ETTG+ +  DRI  +  +  ++ + + R +   + P       
Sbjct: 19 FDTETTGVFTSRDRIATVSLIRRINGTDSPRYW--IINPGVPMPPA 62


>gi|304389634|ref|ZP_07371596.1| conserved hypothetical protein [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|304327187|gb|EFL94423.1| conserved hypothetical protein [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
          Length = 240

 Score = 42.6 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
          FD ETTG+ +  DRI  +  +  ++ + + R +   + P       
Sbjct: 19 FDTETTGVFTSRDRIATVSLIRRINGTDSPRYW--IINPGVPMPPA 62


>gi|298346657|ref|YP_003719344.1| DNA polymerase III subunit epsilon [Mobiluncus curtisii ATCC
          43063]
 gi|298236718|gb|ADI67850.1| DNA polymerase III subunit epsilon [Mobiluncus curtisii ATCC
          43063]
          Length = 240

 Score = 42.6 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
          FD ETTG+ +  DRI  +  +  ++ + + R +   + P       
Sbjct: 19 FDTETTGVFTSRDRIATVSLIRRINGTDSPRYW--IINPGVPMPPA 62


>gi|227542846|ref|ZP_03972895.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181351|gb|EEI62323.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 203

 Score = 42.6 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          +     R +  D+E TGLD K   I+E  AV + D   T
Sbjct: 1  MSNKDNRIVWIDLEMTGLDPKRHVIVE-AAVHITDNDLT 38


>gi|256371657|ref|YP_003109481.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
          ferrooxidans DSM 10331]
 gi|256008241|gb|ACU53808.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
          ferrooxidans DSM 10331]
          Length = 188

 Score = 42.6 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKT 40
          D+E TGLD +   I+EI A+   D  +T
Sbjct: 6  DLEMTGLDPERCVILEIAAIVTDDELET 33


>gi|167945239|ref|ZP_02532313.1| ribonuclease T [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 41

 Score = 42.6 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 10 IVFDIETTGLDSKNDRIIEIGA 31
          IV D+ET G D+K D ++EI A
Sbjct: 20 IVVDVETGGFDAKQDALLEIAA 41


>gi|83816222|ref|YP_444853.1| exonuclease, putative [Salinibacter ruber DSM 13855]
 gi|83757616|gb|ABC45729.1| exonuclease, putative [Salinibacter ruber DSM 13855]
          Length = 236

 Score = 42.6 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTG   + D +IE+G V               + P     +  A ++HGITDE 
Sbjct: 67  VFLDTETTGSGPQ-DAVIELGVVAAQGEVLI----HTLVAP-LAPVTRGARRVHGITDEE 120

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWI 95
           L D P F ++         +    W 
Sbjct: 121 LADAPPFPTVADRLDTVLADAECVWT 146


>gi|187931547|ref|YP_001891531.1| exodeoxyribonuclease I [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187712456|gb|ACD30753.1| exodeoxyribonuclease I [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 482

 Score = 42.6 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 1/129 (0%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71
           D+ET+G+++  D++++  A+           F  F+  N      P A   H I+     
Sbjct: 11  DLETSGINNSFDQVLQFAAIRTYLDFNEIERFNFFVKLNPDTMPSPMATITHHISIAQSN 70

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
              +      +     N      I +N               N  P    +  +  S A 
Sbjct: 71  TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKNGCSRAD 130

Query: 132 RKHPSSRND 140
                +   
Sbjct: 131 LFPIVTCYY 139


>gi|148927126|ref|ZP_01810755.1| oligoribonuclease [candidate division TM7 genomosp. GTL1]
 gi|147887420|gb|EDK72865.1| oligoribonuclease [candidate division TM7 genomosp. GTL1]
          Length = 184

 Score = 42.6 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD + DR++E+ A+
Sbjct: 16 LDLEMTGLDPQRDRVLEVAAI 36


>gi|332662172|ref|YP_004444960.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332330986|gb|AEE48087.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 194

 Score = 42.6 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 57/189 (30%), Gaps = 21/189 (11%)

Query: 11  VFDIETTGLD----------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             D ETTGL           +   R++++  +   +           + P G       +
Sbjct: 4   FLDTETTGLPLNWSAPISRVNNWPRMVQLAGLLYDEEGTLLEQLNYLVRPEGYTIPAAVV 63

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGIT E    +    +     +    E++   +AHN  FD   + AE  R  K+    
Sbjct: 64  RIHGITTERALAEGVPVAQVLNDFRSILEKSKLLVAHNVNFDHAIVGAEYHRYVKEDPLL 123

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK-----------HGALLDSHLLSD 169
                    +           NS    Y                    H A++D    + 
Sbjct: 124 PIPKFCTMTSPEVIYHCALPANSPRGGYKWPKLEELHYKLFKEGIKGAHDAMVDITATAR 183

Query: 170 VYIKMMVGG 178
            Y ++   G
Sbjct: 184 CYWELKRLG 192


>gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
 gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
          Length = 879

 Score = 42.6 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 61/216 (28%), Gaps = 14/216 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I FD ETTGL+++  +I+     V        N  F V L         +          
Sbjct: 319 IAFDTETTGLNAREAKIVGFSFCV------SENEAFYVPLNHTYLAVPSQISMQTAKRAL 372

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                        ++     E N +           + +  +     +P     + D   
Sbjct: 373 GQIYSHFIIGHNLKYDFAIIENNFKLTPP-----KKYADTMILAWLYNPSLRVNMDDLAL 427

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFGFK 186
                       +    + +      ++ + A  D+++    Y+  +       +  GF+
Sbjct: 428 RLFDYKTLHFESVVKKGENFASVELEKACNYAAEDAYITLRFYLYFLKNLEPNLLKLGFE 487

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
           +  +      K     I L  +      +  ++E+ 
Sbjct: 488 SEFNFIEVLRKMEQSGIKLETQKLQNLMQEFEKEIK 523


>gi|312959243|ref|ZP_07773761.1| ribonuclease T [Pseudomonas fluorescens WH6]
 gi|311286503|gb|EFQ65066.1| ribonuclease T [Pseudomonas fluorescens WH6]
          Length = 225

 Score = 42.6 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 64/186 (34%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVF-LCP-NGRKNSPEALKLHG 64
           +V D+ET G +   D ++EI A  +               F + P  G      AL+  G
Sbjct: 33  VVIDVETGGFNCATDALLEIAATTIGMDEQGFVYPEHTHFFRVEPFEGANIEAAALEFTG 92

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I  +                     +       + A  + HN+ FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 152

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    R  H A  D+   ++++  ++ 
Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212

Query: 177 GGSQIN 182
              Q+ 
Sbjct: 213 RWKQMG 218


>gi|300857574|ref|YP_003782557.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685028|gb|ADK27950.1| DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 348

 Score = 42.6 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 33/159 (20%), Gaps = 1/159 (0%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +   I+T+G+     R+I + AV   +  +    F   + P           L      
Sbjct: 22  YVALSIQTSGIHPSTSRLITVDAVTFTEDGEETDHFHAVINPGDNPGPFHLHGLSREEIA 81

Query: 69  FLKDKPSFSSIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             K          +  D      +                              R     
Sbjct: 82  QGKKFSHILKPLGKLIDGRTLILHNTPYTWGFLVSESRRTMSAAARANRNRYRHRNRRRQ 141

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            +     P    D  +  +R G+               L
Sbjct: 142 RVGHIPRPRMIVDTLATARRQGVVFEDIRIRAVAHSLGL 180


>gi|260773955|ref|ZP_05882870.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP
          69.14]
 gi|260610916|gb|EEX36120.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP
          69.14]
          Length = 236

 Score = 42.6 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 19/26 (73%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVEL 34
           + FD ET+G++++ D I+ +G V++
Sbjct: 52 FVAFDFETSGVNARQDHILSLGWVDM 77


>gi|16763100|ref|NP_458717.1| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29144582|ref|NP_807924.1| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|56414696|ref|YP_151771.1| exonuclease [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|197363623|ref|YP_002143260.1| exonuclease [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
 gi|213051586|ref|ZP_03344464.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213427175|ref|ZP_03359925.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213855476|ref|ZP_03383716.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|25513436|pir||AI1038 probable exonuclease STY4637 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505408|emb|CAD06758.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29140220|gb|AAO71784.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56128953|gb|AAV78459.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095100|emb|CAR60646.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 194

 Score = 42.6 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 54/175 (30%), Gaps = 10/175 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL   +  I+EI  ++   +          + P  +    EA+ +HGIT+E
Sbjct: 20  YLFIDTETTGLG-DDAEIVEICIIDSHGFIM----LNTLIKP-TKPIPDEAIAIHGITNE 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+++ I     + F         +NA FD+  I        +       ++    
Sbjct: 74  MVAFAPAWTDICGAVEELFRRFGFV--IYNADFDLRLIRQTYALNERPSEGAPWMLAA-- 129

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            +               +  G          A     +    +  +      +  
Sbjct: 130 HSVCAMKLYAEYRGEPGRFNGYKWHKLVDAAAHEGVVVEGKAHRALADCKMTLGL 184


>gi|323303994|gb|EGA57774.1| Rex2p [Saccharomyces cerevisiae FostersB]
          Length = 186

 Score = 42.6 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37
           D E TGLD  NDRIIEI  +    +
Sbjct: 58 IDCEMTGLDHVNDRIIEICCIITDGH 83


>gi|317048499|ref|YP_004116147.1| exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
 gi|316950116|gb|ADU69591.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
          Length = 222

 Score = 42.6 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 71/177 (40%), Gaps = 20/177 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V+++D           +CP+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGL---QGGVVEVASVDVIDGQIL-NPMSDLICPD-RPISHQAMAVHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP+       +       +  ++AHNA FD   +             P + I T+++A
Sbjct: 59  ADKPTIEQAIGRYH-----GSPHYVAHNASFDRRMLPE----------MPGQWICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           R+  P  +    +L     + ++  +   A    +        ++    +  +  + 
Sbjct: 104 RQLWPGQKYGNQALRHSLKLDVTPPADLHAHRALYDCYVTAALLIRIMEKSGWNAEQ 160


>gi|256848055|ref|ZP_05553499.1| exonuclease RNase T and DNA polymerase III [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715115|gb|EEU30092.1| exonuclease RNase T and DNA polymerase III [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 178

 Score = 42.6 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 61/177 (34%), Gaps = 7/177 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     K      +    + D    +  F   + P     +   +++HGI 
Sbjct: 1   MNFIAMDFET--ASPKRYSACSLSLAIVRDNQIVDE-FYSLINPQT-PFNWRNIQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + + P F     +    F   +   IAHNA FD   +   L+     P     +   
Sbjct: 57  ERDVANAPIF-PEVWKHIAPFYTPDKLVIAHNATFDNSVLKNTLEHYKITPPAYQTLDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            +  +       + LN++     I ++H   H AL D+   +D+ I  +        
Sbjct: 116 RTSQKLLPRLPNHKLNTVADALKIELNH--HHNALDDAQACADILINQVEQFGPSRL 170


>gi|256424775|ref|YP_003125428.1| exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis
           DSM 2588]
 gi|256039683|gb|ACU63227.1| Exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis
           DSM 2588]
          Length = 172

 Score = 42.2 bits (97), Expect = 0.055,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 51/171 (29%), Gaps = 6/171 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE---ALKLH 63
           M  I+ D+E+ G    +  +I  GAV++      ++TF   L P   K  PE        
Sbjct: 1   MAYIMVDVESDGPIPGDYSMISFGAVKVDG--ILDKTFYGRLKPVSEKFIPEALAVSGHT 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                   D     + F  +          +I+ N  FD  F+         +       
Sbjct: 59  RAETLTFDDPKKVMNDFQNWISKVCNDRPIFISDNNGFDWMFVCWYFHHFLGENPFGFSS 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +  S+ +        +   L K    T           ++ L     + +
Sbjct: 119 QNLGSVYKGMEKDMFTNFKHLRKTKH-THHPVDDAKGNAEALLTMKYKLGL 168


>gi|190574880|ref|YP_001972725.1| oligoribonuclease [Stenotrophomonas maltophilia K279a]
 gi|190012802|emb|CAQ46431.1| putative oligoribonuclease [Stenotrophomonas maltophilia K279a]
          Length = 190

 Score = 42.2 bits (97), Expect = 0.055,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 56/182 (30%), Gaps = 9/182 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSP-EALKLHGI 65
           R I  D+E TGLD+ ND IIEI  V       T+    V    P    + P E L+    
Sbjct: 10  RLIWIDLEMTGLDTDNDSIIEIATV------VTDAQLNVLAEGPEFAIHHPLETLEAMDE 63

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRII 124
            +     +               +  A+ +   A++   G        I +D     R +
Sbjct: 64  WNRNQHRRSGLWQRVVGSTTTLGQAEAQTVNFLAQWIPAGLSPMCGNSICQDRRFLHRQM 123

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
             L           + +  L KR+  +++      +   +       I  +    Q    
Sbjct: 124 PRLEKYFHYRNLDVSTVKELAKRWAPSVAAGVGKNSNHTALSDVHDSIAELRHYRQFMGA 183

Query: 185 FK 186
             
Sbjct: 184 LS 185


>gi|91787582|ref|YP_548534.1| oligoribonuclease [Polaromonas sp. JS666]
 gi|91696807|gb|ABE43636.1| Exonuclease [Polaromonas sp. JS666]
          Length = 187

 Score = 42.2 bits (97), Expect = 0.056,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          ++K+    +  D E TGLD + +R+IEI  V
Sbjct: 8  LKKSDQNLVWLDCEMTGLDPEKERLIEIAVV 38


>gi|221487325|gb|EEE25557.1| oligoribonuclease protein, putative [Toxoplasma gondii GT1]
          Length = 367

 Score = 42.2 bits (97), Expect = 0.056,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 10  IV-FDIETTGLDSKNDRIIEIGAVELLD 36
           IV  D E TGLD + D+IIEI  +    
Sbjct: 192 IVWVDCEMTGLDVETDQIIEIAVIVTDG 219


>gi|90413373|ref|ZP_01221366.1| DNA polymerase III subunit epsilon [Photobacterium profundum
          3TCK]
 gi|90325615|gb|EAS42084.1| DNA polymerase III subunit epsilon [Photobacterium profundum
          3TCK]
          Length = 207

 Score = 42.2 bits (97), Expect = 0.056,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 10 IVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLC 49
          +  D ETT LD  +  ++ I A V   +   T+++  + L 
Sbjct: 31 VSVDCETTSLDPHSAELVTIAATVIKDNRILTSKSIHLTLR 71


>gi|46255199|ref|YP_006111.1| hypothetical protein TT_P0128 [Thermus thermophilus HB27]
 gi|46198048|gb|AAS82458.1| hypothetical protein TT_P0128 [Thermus thermophilus HB27]
          Length = 1649

 Score = 42.2 bits (97), Expect = 0.056,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 62/225 (27%), Gaps = 12/225 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+E T  D     ++E+ AV   D     R F  +L           +         
Sbjct: 9   VALDLEATSTDPSEAEVLEVAAV---DGE--GRVFHRYLATQRPLPPDHEVFQLTGIPYE 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
             +    +   +             + HN       +          P      +DTL +
Sbjct: 64  EYEAKKVAPKEALEELLAFLGGRPLLGHNLLRYDLPLLQRHLEEAGLPRWQGEALDTLRL 123

Query: 130 ARRKHPSSRNDLNSLC----KRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           A    P+    L          + +       H AL D+     V+ +++  G +     
Sbjct: 124 AHLLFPTPPGGLEGYRLGDLYAFLLGRPLEGAHRALNDAQATLAVFHRLLDRGRR---AL 180

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
             +        +  +P   L   D+ L   +   E D     ++ 
Sbjct: 181 AQHPGLVRAWRELGLPEGHLFPEDEGLIKDLLAREADVEAFFVEK 225


>gi|55978361|ref|YP_145417.1| hypothetical protein TTHB178 [Thermus thermophilus HB8]
 gi|55773534|dbj|BAD71974.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 296

 Score = 42.2 bits (97), Expect = 0.056,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 62/225 (27%), Gaps = 12/225 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+E T  D     ++E+ AV   D     R F  +L           +         
Sbjct: 9   VALDLEATSTDPSEAEVLEVAAV---DGE--GRVFHRYLATQRPLPPDHEVFQLTGIPYE 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
             +    +   +             + HN       +          P      +DTL +
Sbjct: 64  EYEAKKVAPKEALEELLAFLGGRPLLGHNLLRYDLPLLQRHLEEAGLPRWQGEALDTLRL 123

Query: 130 ARRKHPSSRNDLNSLC----KRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           A    P+    L          + +       H AL D+     V+ +++  G +     
Sbjct: 124 AHLLFPTPPGGLEGYRLGDLYAFLLGRPLEGAHRALNDAQATLAVFHRLLDRGRR---AL 180

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
             +        +  +P   L   D+ L   +   E D     ++ 
Sbjct: 181 AQHPGLVRAWRELGLPEGHLFPEDEGLIKDLLAREADVEAFFVEK 225


>gi|254525014|ref|ZP_05137069.1| oligoribonuclease [Stenotrophomonas sp. SKA14]
 gi|219722605|gb|EED41130.1| oligoribonuclease [Stenotrophomonas sp. SKA14]
          Length = 190

 Score = 42.2 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 54/183 (29%), Gaps = 11/183 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           R I  D+E TGLD+ ND IIEI  V      +       F          +  E L+   
Sbjct: 10  RLIWIDLEMTGLDTDNDSIIEIATVVTDAQLNVLAEGPEF-------AIHHPVETLEAMD 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRI 123
             +     +        +      +  A+ +   A++   G        I +D     R 
Sbjct: 63  EWNRNQHRRSGLWQRVVDSTTTLGQAEAQTVNFLAQWIPAGLSPMCGNSICQDRRFLHRQ 122

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +  L           + +  L KR+  T++      +   +       I  +    Q   
Sbjct: 123 MPRLEKYFHYRNLDVSTVKELAKRWAPTVAAGVGKNSNHTALSDVHDSIAELRHYRQFMG 182

Query: 184 GFK 186
              
Sbjct: 183 ALS 185


>gi|269966857|ref|ZP_06180930.1| oligoribonuclease [Vibrio alginolyticus 40B]
 gi|269828524|gb|EEZ82785.1| oligoribonuclease [Vibrio alginolyticus 40B]
          Length = 219

 Score = 42.2 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD +  +IIEI ++
Sbjct: 49 VDLEMTGLDPETHKIIEIASI 69


>gi|254671000|emb|CBA07757.1| oligoribonuclease [Neisseria meningitidis alpha153]
          Length = 215

 Score = 42.2 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ + DRIIE+  +
Sbjct: 38 LDMEMTGLNPETDRIIEVAMI 58


>gi|325479508|gb|EGC82604.1| conserved domain protein [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 301

 Score = 42.2 bits (97), Expect = 0.058,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYS 38
           +IV DIETTGLDS  D+++ +G + + +  
Sbjct: 16 NEIVLDIETTGLDSSVDKLVLLGIILVENNK 46


>gi|323353934|gb|EGA85787.1| Rex2p [Saccharomyces cerevisiae VL3]
          Length = 229

 Score = 42.2 bits (97), Expect = 0.058,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 8/63 (12%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLCPNGRKNSPEALKLH 63
           D E TGLD  NDRIIEI  +    +         + +  ++  +               
Sbjct: 18 IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMBKMNEWCI 77

Query: 64 GIT 66
             
Sbjct: 78 EHH 80


>gi|254672653|emb|CBA06469.1| oligoribonuclease [Neisseria meningitidis alpha275]
          Length = 215

 Score = 42.2 bits (97), Expect = 0.059,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ + DRIIE+  +
Sbjct: 38 LDMEMTGLNPETDRIIEVAMI 58


>gi|124002816|ref|ZP_01687668.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134]
 gi|123992044|gb|EAY31431.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134]
          Length = 1403

 Score = 42.2 bits (97), Expect = 0.059,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 68/216 (31%), Gaps = 21/216 (9%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSP 57
            ++FD ETTGL         D     R+++I   +   +    +    + + P G     
Sbjct: 2   YLIFDTETTGLPKDFNAPHTDVDNWPRLVQIAWQLHDYNGKLVSAE-NMIVKPEGFTIPF 60

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL------- 110
            A K+HGI+ E   ++    +   E +     ++   I HN  FDV  + AE        
Sbjct: 61  NAEKVHGISTEIALEEGLPLNEVLEKFAVDIARSELIIGHNIGFDVNIMGAEYVRTTVDS 120

Query: 111 --QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
               +           + + I   +    +    +       + S    H A  D    +
Sbjct: 121 KLHEVPTYDTKSEETAEYVGIQGGRGGKFKWPTLTELHTKLFSESFDDAHDAAYDVLATA 180

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204
             Y  ++  G     G    +   ++       N  
Sbjct: 181 RCYFGLISIGIAPPLGDLEADAVVYEPPVLDAANFE 216


>gi|313905505|ref|ZP_07838869.1| Exonuclease RNase T and DNA polymerase III [Eubacterium
          cellulosolvens 6]
 gi|313469689|gb|EFR65027.1| Exonuclease RNase T and DNA polymerase III [Eubacterium
          cellulosolvens 6]
          Length = 320

 Score = 42.2 bits (97), Expect = 0.059,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 8/52 (15%)

Query: 7  MRKIVFDIE----TTGLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCP 50
          M  IVFD+E      G   +N R    IIEIGAV+L        T+Q  + P
Sbjct: 1  MNYIVFDLEWNQSPHGKSRENPRLPFEIIEIGAVKLDHERNIVDTWQKVIRP 52


>gi|149633012|ref|XP_001508919.1| PREDICTED: similar to Three prime histone mRNA exonuclease 1
           [Ornithorhynchus anatinus]
          Length = 467

 Score = 42.2 bits (97), Expect = 0.059,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 16/199 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           V D E T   G   +    IIE   V L  ++ +   TFQ ++ P      S   + L G
Sbjct: 250 VIDFEATCEEGNPPEFIHEIIEFPIVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINLTG 309

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---- 120
           IT + +    +F  +  +  ++  ++        +    G  +       +  +      
Sbjct: 310 ITQDVVDRADTFPQVLQKVVEWMRQKELGTKYKYSILTDGSWDMSKFLTIQCRISHLKYP 369

Query: 121 -----SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G++ + R  H  L DS  ++ + ++M+
Sbjct: 370 AFAKKWINIRKSYGNFYKVPRSQTKLAIMLEKLGMSYAGRP-HSGLDDSKNIARIAVRML 428

Query: 176 VGGSQINFGFKTNEDRFFK 194
             G Q+    K +  +   
Sbjct: 429 QDGCQLRVNEKMHAGQLTS 447


>gi|260770593|ref|ZP_05879525.1| oligoribonuclease [Vibrio furnissii CIP 102972]
 gi|260614423|gb|EEX39610.1| oligoribonuclease [Vibrio furnissii CIP 102972]
 gi|315178350|gb|ADT85264.1| oligoribonuclease [Vibrio furnissii NCTC 11218]
          Length = 181

 Score = 42.2 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  +IIEI 
Sbjct: 11 IDLEMTGLDPETHKIIEIA 29


>gi|237829909|ref|XP_002364252.1| oligoribonuclease, putative [Toxoplasma gondii ME49]
 gi|211961916|gb|EEA97111.1| oligoribonuclease, putative [Toxoplasma gondii ME49]
 gi|221507120|gb|EEE32724.1| oligoribonuclease, putative [Toxoplasma gondii VEG]
          Length = 367

 Score = 42.2 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 10  IV-FDIETTGLDSKNDRIIEIGAVELLD 36
           IV  D E TGLD + D+IIEI  +    
Sbjct: 192 IVWVDCEMTGLDVETDQIIEIAVIVTDG 219


>gi|111022071|ref|YP_705043.1| DNA polymerase III subunit epsilon [Rhodococcus jostii RHA1]
 gi|110821601|gb|ABG96885.1| DNA polymerase [Rhodococcus jostii RHA1]
          Length = 231

 Score = 42.2 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 9/145 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD+ETTG D  + RI+    + ++D +   +RT+   L P        +      T+  
Sbjct: 11  AFDLETTGPDPTDARIVS-ACIAVVDAHHFESRTW--LLDPEVPIPQGASDVHGISTEYA 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                 +++ + E  +  ++        +A NA +D+  ++ E  R+    L    ++D 
Sbjct: 68  RAHGQDYATGYGEIREALHDAWTRDHAVVAFNASYDLTVMHTEGLRLGLAELVTGIVVDP 127

Query: 127 LSIARRKHPSSRNDLN--SLCKRYG 149
             I R      +      ++C+ YG
Sbjct: 128 YVIDREMDRHRKGRRTLGAVCEHYG 152


>gi|74317857|ref|YP_315597.1| oligoribonuclease [Thiobacillus denitrificans ATCC 25259]
 gi|123611601|sp|Q3SHU1|ORN_THIDA RecName: Full=Oligoribonuclease
 gi|74057352|gb|AAZ97792.1| Exonuclease [Thiobacillus denitrificans ATCC 25259]
          Length = 182

 Score = 42.2 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL  ++DRIIE+  V
Sbjct: 11 LDMEMTGLSPESDRIIELAIV 31


>gi|332557484|ref|ZP_08411806.1| Exonuclease [Rhodobacter sphaeroides WS8N]
 gi|332275196|gb|EGJ20511.1| Exonuclease [Rhodobacter sphaeroides WS8N]
          Length = 309

 Score = 42.2 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 56/203 (27%), Gaps = 11/203 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R I  D+ET   D  +  I +IG   ++  +       F   + P           +HGI
Sbjct: 27  RFIAVDVETATADPAS--ICQIGLACIDHQNGFHL---FSTLVDPE-VPIDYRNRAIHGI 80

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D  ++  P F    +   +         +  ++ FD     A   R    PL  S    
Sbjct: 81  CDGDVRGMPCFPVAMAAMRELLEAS---PLVEHSSFDHRAFAAACARYGLPPLSASWHDS 137

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             +          N  + L             H A  D++  + + +             
Sbjct: 138 VRAARNAWPHLKGNGGHGLSSVCAHLALEFDHHDAGADAYACASIILAAEAETGASFPDL 197

Query: 186 KTNEDRFFKEEKKTVPNISLLKR 208
                   ++  + V       R
Sbjct: 198 FAPAPTARRQRSEPVRRAPSPGR 220


>gi|126725765|ref|ZP_01741607.1| Exonuclease [Rhodobacterales bacterium HTCC2150]
 gi|126704969|gb|EBA04060.1| Exonuclease [Rhodobacterales bacterium HTCC2150]
          Length = 193

 Score = 42.2 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 64/190 (33%), Gaps = 17/190 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I  D+ET   +     I +IG +  +++  +  T+  ++ P          +LHGI  
Sbjct: 10  RFIAVDVET--ANYDVSSICQIG-LAFVNFDASIDTYSTYVDPCTSFAD-GNTRLHGIDA 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  P F+ I  E            +  +++FD    +A        PL  +      
Sbjct: 66  RTVRGAPVFAQILPELRSVLEAHQ---LVQHSRFDEKAFDAACSFAGVPPLKSAWENSVT 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI----------KMMVG 177
              +       N  + L     +     + H A  D+   ++V +           M  G
Sbjct: 123 IARKAWPELKGNGGHGLGNLKKVLGLQFNHHDAGEDARAAAEVVLMAEKRMGAKFNMYSG 182

Query: 178 GSQINFGFKT 187
             Q+ F F  
Sbjct: 183 SRQLAFEFNE 192


>gi|194366202|ref|YP_002028812.1| oligoribonuclease [Stenotrophomonas maltophilia R551-3]
 gi|194349006|gb|ACF52129.1| Exonuclease RNase T and DNA polymerase III [Stenotrophomonas
           maltophilia R551-3]
          Length = 190

 Score = 42.2 bits (97), Expect = 0.061,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 50/182 (27%), Gaps = 9/182 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66
           R I  D+E TGLD+ ND IIEI  V       T+    V    P    + P         
Sbjct: 10  RLIWIDLEMTGLDTDNDSIIEIATV------VTDAQLNVLAEGPEFAIHHPLETLEAMDE 63

Query: 67  DEFLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
               + + S  +  +          +             G        I +D     R +
Sbjct: 64  WNRNQHRRSGLWQRVVDSTVTLAQAEAQTVNFLAQWIPAGLSPMCGNSICQDRRFLHRQM 123

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
             L           + +  L KR+  T++      +   +       I  +    Q    
Sbjct: 124 PRLEKYFHYRNLDVSTVKELAKRWAPTVAAGVGKNSNHTALSDVHDSIAELRHYRQFMGA 183

Query: 185 FK 186
             
Sbjct: 184 LS 185


>gi|146329636|ref|YP_001209796.1| oligoribonuclease [Dichelobacter nodosus VCS1703A]
 gi|166216257|sp|A5EY84|ORN_DICNV RecName: Full=Oligoribonuclease
 gi|146233106|gb|ABQ14084.1| oligoribonuclease [Dichelobacter nodosus VCS1703A]
          Length = 180

 Score = 42.2 bits (97), Expect = 0.061,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M +KN    +  D+E TGLD ++D IIEI 
Sbjct: 1  MDKKN--NLVWIDLEMTGLDPQHDEIIEIA 28


>gi|284799973|ref|ZP_05985349.2| oligoribonuclease [Neisseria subflava NJ9703]
 gi|284796237|gb|EFC51584.1| oligoribonuclease [Neisseria subflava NJ9703]
          Length = 230

 Score = 42.2 bits (97), Expect = 0.062,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 47/178 (26%), Gaps = 3/178 (1%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+E TGL+ ++DRIIE+  +             V++     +      + +  T     
Sbjct: 56  LDMEMTGLNPEHDRIIEVAMIITDSDLNVLAQSDVYVIHQSDELLDGMDEWNTATHGRTG 115

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                        +          A                I++D     + +  L    
Sbjct: 116 LTQRVRESKLTEAEVEQNLLDFMSAW---IPEKSTPMCGNSIHQDRRFMVKYMPRLEAYF 172

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
                  + L  L KR+   ++          +       I+ M    +      + +
Sbjct: 173 HYRNLDVSTLKELAKRWNPAVAKSVVKRGSHKALDDILESIEEMRHYREHFLKLPSEQ 230


>gi|149922094|ref|ZP_01910534.1| Inhibitor of the KinA pathway to sporulation, predicted
          exonuclease [Plesiocystis pacifica SIR-1]
 gi|149817031|gb|EDM76513.1| Inhibitor of the KinA pathway to sporulation, predicted
          exonuclease [Plesiocystis pacifica SIR-1]
          Length = 213

 Score = 42.2 bits (97), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 9  KIVFDIETT----GLDSKND-RIIEIGAVELLDYSKT-NRTFQVFLCPNGRK 54
           +V D+E T    G   + +  IIEIGAV +   +    R FQ F+ P   +
Sbjct: 6  YLVIDLEATCDDAGAVPRREMEIIEIGAVLVDGQTLCPKREFQRFVRPLRHR 57


>gi|213029040|ref|ZP_03343487.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 139

 Score = 42.2 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 10/122 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +         + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +               R+   +  +
Sbjct: 59  ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLPELPGEWICTMKLSRRLWPGIKYS 113

Query: 131 RR 132
             
Sbjct: 114 NM 115


>gi|315638420|ref|ZP_07893597.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis JV21]
 gi|315481411|gb|EFU72038.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis JV21]
          Length = 260

 Score = 42.2 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 6/164 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIE+TG    + +I+EIGAV++ ++ + +R F+ F+     +      +L GI    +
Sbjct: 74  IVDIESTGG-INSGQILEIGAVKIQNHKELDR-FESFVK--VDEIPLNITELTGIELNMV 129

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD P+ + +   F       ++ ++AHN KFD  FI+  L       L   +I       
Sbjct: 130 KDAPNLTRVLEAF--RLFLNDSVFVAHNVKFDYNFISKSLYECGFGILLNRKICTIDFAQ 187

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                S              +  HR+ + AL  + +      K+
Sbjct: 188 CCIESSHYKLDALKEILKIESTHHRALNDALAAAEIFKYCLSKL 231


>gi|170781928|ref|YP_001710260.1| oligoribonuclease [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156496|emb|CAQ01646.1| oligoribonuclease [Clavibacter michiganensis subsp. sepedonicus]
          Length = 206

 Score = 42.2 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNG 52
          +  N  R +  D E TGLD   D ++E+  V    D    +  F + + P+ 
Sbjct: 1  MGNNADRLVWIDCEMTGLDLAIDELVEVAVVVTDFDLVPVDAGFTIVINPDP 52


>gi|165905605|ref|NP_080343.4| 3'-5' exoribonuclease 1 [Mus musculus]
 gi|26380424|dbj|BAB29333.2| unnamed protein product [Mus musculus]
 gi|74228094|dbj|BAE38007.1| unnamed protein product [Mus musculus]
          Length = 345

 Score = 42.2 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T   G  ++    IIE   V L  ++ +   TFQ ++ P      S   + L G
Sbjct: 128 IIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNDQLSEFCIGLTG 187

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +  +  ++                  + +    +       +  + 
Sbjct: 188 ITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLSRLKHP 247

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G+    R  H  L DS  ++ + I+M+
Sbjct: 248 AFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAIRML 306

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 307 QDGCELRIN 315


>gi|190015910|ref|YP_001965118.1| putative exonuclease [Rhodococcus sp. NS1]
 gi|114796750|gb|ABI79343.1| putative exonuclease [Rhodococcus sp. NS1]
          Length = 238

 Score = 42.2 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 10/160 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDEF 69
           + D+ET+GLD     IIEI  +     + T        +  +  +  P A+++HG+T   
Sbjct: 53  IVDVETSGLD---GSIIEIAVI----DAATGEVLLNTLVDCSPVEIEPGAVEVHGLTATD 105

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P +S +F E       +N   +A+NAKFD G +  + +R   DP   +       +
Sbjct: 106 LAGAPRWSEVFPELAA--ATKNRVVLAYNAKFDRGRVLHDCRREGIDPAHLAEPARWQCV 163

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             R+  +    L+   +  G   +        +   +L+D
Sbjct: 164 MARRCEALGLGLDGRLRLGGGHRALADVRATRVVLRMLAD 203


>gi|254451927|ref|ZP_05065364.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
 gi|198266333|gb|EDY90603.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
          Length = 464

 Score = 42.2 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRT 43
          M    FD+ETTG+    D+ ++  A+    D+ +  R 
Sbjct: 1  MNFAFFDLETTGVSPAFDQPLQFAAILTDSDFKEIERV 38


>gi|75812567|ref|YP_320186.1| exonuclease [Anabaena variabilis ATCC 29413]
 gi|75705323|gb|ABA24997.1| Exonuclease [Anabaena variabilis ATCC 29413]
          Length = 192

 Score = 42.2 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 55/176 (31%), Gaps = 7/176 (3%)

Query: 9   KIVFDIETT----GLDSKND-RIIEIGAVELLDYSK-TNRTFQVFLCPNGRKN-SPEALK 61
            +V D+E T    G   +++  IIEIGAV +   +      FQ F+ P      +     
Sbjct: 10  FLVLDLEATCCDKGTIKRHEMEIIEIGAVMVEAQTLKILDEFQTFIKPIRHPILTEFCKL 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  IT   +   P +    +    + ++           +D      + +  N       
Sbjct: 70  LTSITQTQVDHAPEYPEAIAMLKQWLSKYPNAVFGSWGDYDRNQFKQDSKFHNILFPIAY 129

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             I+   +        +    +   +          H  + D+  ++ +   ++  
Sbjct: 130 PHINLKQMFSESQDLPKRYGMAEALQLVNIELEGIHHRGIDDAKNIAKLLPWILNE 185


>gi|15617165|ref|NP_240378.1| oligoribonuclease [Buchnera aphidicola str. APS (Acyrthosiphon
          pisum)]
 gi|11133762|sp|P57637|ORN_BUCAI RecName: Full=Oligoribonuclease
 gi|25338349|pir||H84996 oligoribonuclease [imported] - Buchnera sp. (strain APS)
 gi|10039230|dbj|BAB13264.1| oligoribonuclease [Buchnera aphidicola str. APS (Acyrthosiphon
          pisum)]
          Length = 184

 Score = 42.2 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          ++ NK   I  D+E TGL+ K  RIIEI 
Sbjct: 1  MKINKKNLIWIDLEMTGLNPKVHRIIEIA 29


>gi|227543169|ref|ZP_03973218.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227180978|gb|EEI61950.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 449

 Score = 42.2 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 71/209 (33%), Gaps = 5/209 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D+ET   +     IIEIG  ++L+   +   T++    P       E + +HGI  
Sbjct: 105 FVAIDVET--ANDDWGSIIEIGVTKVLNGLVEEQATWRCTPPPGMEDFLDENIAIHGIRP 162

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++ +PSF+  +    +         ++HNA+FD   +       +             
Sbjct: 163 EDIEGEPSFAQRYELVKE--FTGELPMVSHNAQFDFTALARACHASHCAAAPNEFGCSLA 220

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
               R    + N L  +C+  GI + H        ++       +  + G +     F  
Sbjct: 221 LSRSRDLGFATNRLPDVCRGLGIALEHHHCAADDAEACARIITSLASIDGFTGSFPEFIA 280

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           +      + +      S+ K      +  
Sbjct: 281 STGFTMGKIRNEGRIRSVQKIRHDRSSSP 309


>gi|50086122|ref|YP_047632.1| oligoribonuclease [Acinetobacter sp. ADP1]
 gi|59798028|sp|Q6F805|ORN_ACIAD RecName: Full=Oligoribonuclease
 gi|49532098|emb|CAG69810.1| oligoribonuclease [Acinetobacter sp. ADP1]
          Length = 183

 Score = 42.2 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37
          M      R I  D+E TGLD+ ND+IIEI  +   D+
Sbjct: 1  MSSTQDTRLIWIDLEMTGLDTDNDQIIEIATIITDDH 37


>gi|302537604|ref|ZP_07289946.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
 gi|302446499|gb|EFL18315.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
          Length = 253

 Score = 42.2 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK 39
          FD+ETTG +    RI+    VE+     
Sbjct: 22 FDLETTGTEPGESRIVTAAVVEVRGGEV 49


>gi|302329867|gb|ADL20061.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275553|gb|ADO25452.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis I19]
          Length = 369

 Score = 42.2 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 33/159 (20%), Gaps = 1/159 (0%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +   I+T+G+     R+I + AV   +  +    F   + P           L      
Sbjct: 43  YVALSIQTSGIHPSTSRLITVDAVTFTEDGEETDHFHAVINPGDNPGPFHLHGLSREEIA 102

Query: 69  FLKDKPSFSSIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             K          +  D      +                              R     
Sbjct: 103 QGKKFSHILKPLGKLIDGRTLILHNTPYTWGFLVSESRRAMSAAARANRNRYRHRNRRRQ 162

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            +     P    D  +  +R G+               L
Sbjct: 163 RVGHIPRPRMIVDTLATARRQGVVFEDIRIRAVAHSLGL 201


>gi|227488565|ref|ZP_03918881.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091459|gb|EEI26771.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 449

 Score = 42.2 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 71/209 (33%), Gaps = 5/209 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D+ET   +     IIEIG  ++L+   +   T++    P       E + +HGI  
Sbjct: 105 FVAIDVET--ANDDWGSIIEIGVTKVLNGLVEEQATWRCTPPPGMEDFLDENIAIHGIRP 162

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++ +PSF+  +    +         ++HNA+FD   +       +             
Sbjct: 163 EDIEGEPSFAQRYELVKE--FTGELPMVSHNAQFDFTALARACHASHCAAAPNEFGCSLA 220

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
               R    + N L  +C+  GI + H        ++       +  + G +     F  
Sbjct: 221 LSRSRDLGFATNRLPDVCRGLGIALEHHHCAADDAEACARIITSLASIDGFTGSFPEFIA 280

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           +      + +      S+ K      +  
Sbjct: 281 STGFTMGKIRNEGRIRSVQKIRHDRSSSP 309


>gi|153939051|ref|YP_001391011.1| putative DNA polymerase III, epsilon subunit [Clostridium
          botulinum F str. Langeland]
 gi|152934947|gb|ABS40445.1| putative DNA polymerase III, epsilon subunit [Clostridium
          botulinum F str. Langeland]
 gi|295319069|gb|ADF99446.1| putative DNA polymerase III, epsilon subunit [Clostridium
          botulinum F str. 230613]
          Length = 195

 Score = 42.2 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTF 44
          M+KI  D ETTGL+     II++   V  +++    + F
Sbjct: 1  MKKIFIDTETTGLEPG--EIIQLTYCVCDINFRGEEKVF 37


>gi|302205313|gb|ADL09655.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis C231]
          Length = 348

 Score = 42.2 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 33/159 (20%), Gaps = 1/159 (0%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +   I+T+G+     R+I + AV   +  +    F   + P           L      
Sbjct: 22  YVALSIQTSGIHPSTSRLITVDAVTFTEDGEETDHFHAVINPGDNPGPFHLHGLSREEIA 81

Query: 69  FLKDKPSFSSIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             K          +  D      +                              R     
Sbjct: 82  QGKKFSHILKPLGKLIDGRTLILHNTPYTWGFLVSESRRAISAAARANRNRYRHRNRRRQ 141

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            +     P    D  +  +R G+               L
Sbjct: 142 RVGHIPRPRMIVDTLATARRQGVVFEDIRIRAVAHSLGL 180


>gi|238926233|ref|ZP_04657993.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
 gi|238885913|gb|EEQ49551.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
          Length = 179

 Score = 42.2 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGIT 66
           + +VFD ETTG  S  D ++ +  V   +   T  T       P  +   P+A +++ I+
Sbjct: 3   KILVFDTETTGFRSD-DEVLTLAVV---NG--TGETMVDSMYAPVRKAEWPDAERINRIS 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              + D     +   E    FN  +   + +N +FD+  +     RI         +  +
Sbjct: 57  PAMVADCDPILTHREELECLFNAPDTLLVGYNIEFDIRLLAQSGIRITNANRHDVMLAFS 116

Query: 127 ---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                   R+       L    + Y         HGAL D+      Y KM
Sbjct: 117 AFRKVPDARRGGYRWWKLTECAEYYRYDWGTTVAHGALADTLATLFCYRKM 167


>gi|226288880|gb|EEH44392.1| phosphoglucomutase [Paracoccidioides brasiliensis Pb18]
          Length = 806

 Score = 42.2 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 12 FDIETTGLDSKNDRIIEIGA 31
           D E TGLD + D+II+I  
Sbjct: 13 IDCEMTGLDPRTDKIIQICC 32


>gi|213964467|ref|ZP_03392667.1| DNA polymerase III subunit epsilon [Corynebacterium amycolatum
          SK46]
 gi|213952660|gb|EEB64042.1| DNA polymerase III subunit epsilon [Corynebacterium amycolatum
          SK46]
          Length = 226

 Score = 42.2 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVEL 34
          R + FD+ETTG D +  +I+    V L
Sbjct: 8  RMLAFDLETTGTDPRTCKIVTSALVRL 34


>gi|88856168|ref|ZP_01130828.1| DNA polymerase III subunit epsilon [marine actinobacterium
          PHSC20C1]
 gi|88814487|gb|EAR24349.1| DNA polymerase III subunit epsilon [marine actinobacterium
          PHSC20C1]
          Length = 232

 Score = 42.2 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPN 51
          FD+ETTG+D +  RI+    + L+D      +R +     P 
Sbjct: 10 FDLETTGVDVETSRIVS-ACIALVDASGVVISR-WDWLADPG 49


>gi|323308092|gb|EGA61345.1| Rex2p [Saccharomyces cerevisiae FostersO]
          Length = 229

 Score = 42.2 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37
           D E TGLD  NDRIIEI  +    +
Sbjct: 18 IDCEMTGLDHVNDRIIEICCIITDGH 43


>gi|311087943|gb|ADP68022.1| oligoribonuclease [Buchnera aphidicola str. JF98 (Acyrthosiphon
          pisum)]
          Length = 178

 Score = 42.2 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          ++ NK   I  D+E TGL+ K  RIIEI 
Sbjct: 1  MKINKKNLIWIDLEMTGLNPKVHRIIEIA 29


>gi|20089704|ref|NP_615779.1| hypothetical protein MA0820 [Methanosarcina acetivorans C2A]
 gi|19914634|gb|AAM04259.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 249

 Score = 42.2 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 9/46 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGA---------VELLDYSKTNRTFQVF 47
            FDIETTGL    DRI  +G          V  ++       F  +
Sbjct: 89  FFDIETTGLSPARDRITVVGIYDGNESKMYVRGINLDDIVEEFSKY 134


>gi|146310438|ref|YP_001175512.1| exodeoxyribonuclease X [Enterobacter sp. 638]
 gi|145317314|gb|ABP59461.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638]
          Length = 223

 Score = 42.2 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 47/166 (28%), Gaps = 17/166 (10%)

Query: 11  VFDIETTGLD--SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           V D ETTGL+   +   ++E+ +V+++D           + P                  
Sbjct: 4   VIDTETTGLEGGPET--VVELASVDIVDGVIC-NPMSDLVKPGV------------AIGF 48

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                   +    E     +E    ++  +A         + +    D           S
Sbjct: 49  EAMAIHHITEDMVEGAPLLSEVIGRYLGADAYVAHNAKFDKSKLPQIDAPWICTAKLARS 108

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +       S   L                H AL D ++ +++ + M
Sbjct: 109 LLPEHKSHSNQYLRYSLGLKPEVPEGLYAHRALYDCYVTAELLLYM 154


>gi|319779642|ref|YP_004130555.1| 3'-to-5' oligoribonuclease (orn) [Taylorella equigenitalis MCE9]
 gi|317109666|gb|ADU92412.1| 3'-to-5' oligoribonuclease (orn) [Taylorella equigenitalis MCE9]
          Length = 181

 Score = 42.2 bits (97), Expect = 0.071,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +     R +  D+E TGL+   DRIIE+  +
Sbjct: 1  MPNKSHRMVWLDMEMTGLNPDQDRIIEVAVI 31


>gi|119946941|ref|YP_944621.1| oligoribonuclease [Psychromonas ingrahamii 37]
 gi|119865545|gb|ABM05022.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas
          ingrahamii 37]
          Length = 179

 Score = 42.2 bits (97), Expect = 0.071,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 5  NKMRKIVFDIETTGLDSKNDRIIEIG 30
          NK   +  D+E TGL+   D+IIEI 
Sbjct: 2  NKNNLVWIDLEMTGLNPDTDKIIEIA 27


>gi|71274937|ref|ZP_00651225.1| Exonuclease [Xylella fastidiosa Dixon]
 gi|71898826|ref|ZP_00680994.1| Exonuclease [Xylella fastidiosa Ann-1]
 gi|170729792|ref|YP_001775225.1| oligoribonuclease [Xylella fastidiosa M12]
 gi|71164669|gb|EAO14383.1| Exonuclease [Xylella fastidiosa Dixon]
 gi|71731412|gb|EAO33475.1| Exonuclease [Xylella fastidiosa Ann-1]
 gi|167964585|gb|ACA11595.1| oligoribonuclease [Xylella fastidiosa M12]
          Length = 193

 Score = 42.2 bits (97), Expect = 0.071,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 49/176 (27%), Gaps = 9/176 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66
           R I  D+E TGLD+  D IIEI  V       T+    V    P    + P  +      
Sbjct: 13  RLIWIDLEMTGLDTHRDSIIEIATV------VTDAQLNVLAEGPEFAISHPLNVLEAMDE 66

Query: 67  DEFLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
               + + S  +  + +        + +           G        I +D     R +
Sbjct: 67  WNRNQHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKTGASPMCGNSICQDRRFLHRQM 126

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             L           + L  L   +  +I       +   +       I  +    +
Sbjct: 127 PCLERYFHYRNLDVSTLKELAGCWSPSILDGVVKTSNHTALSDIYDSIAELRHYRK 182


>gi|149377531|ref|ZP_01895272.1| oligoribonuclease [Marinobacter algicola DG893]
 gi|149358223|gb|EDM46704.1| oligoribonuclease [Marinobacter algicola DG893]
          Length = 180

 Score = 42.2 bits (97), Expect = 0.072,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT 43
           D+E TGLD + +RIIEI  +       T   
Sbjct: 10 IDLEMTGLDPEKERIIEIATIVTDSDLNTIEE 41


>gi|163856231|ref|YP_001630529.1| oligoribonuclease [Bordetella petrii DSM 12804]
 gi|163259959|emb|CAP42260.1| oligoribonuclease [Bordetella petrii]
          Length = 181

 Score = 41.8 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +  N+ R +  D+E TGLD   +RIIE+  V
Sbjct: 1  MAANENRLVWLDMEMTGLDPTKERIIEVAVV 31


>gi|331002347|ref|ZP_08325865.1| hypothetical protein HMPREF0491_00727 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410163|gb|EGG89597.1| hypothetical protein HMPREF0491_00727 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 357

 Score = 41.8 bits (96), Expect = 0.074,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 65/209 (31%), Gaps = 9/209 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +++ FDIETTGL  KN  +  IG + +       + +           S E L L    +
Sbjct: 24  KQLFFDIETTGLSPKNSNLYLIGCISIDGDKLIFKQWFS------ESLSEETLILQAFYE 77

Query: 68  EFLKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                          F   +  E   ++   N   +   I+   Q            ++ 
Sbjct: 78  YAAGFDTLIHFNGDGFDLPYIKECAKQYYLFNPLENYKSIDIYKQIRYLKKPLSLSHMNQ 137

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS--DVYIKMMVGGSQINFG 184
            S+        ++  +             SK  ++L   LL   +  + M+     ++F 
Sbjct: 138 KSLEEFLGLYRKDLYDGGTLIRFYYDYIESKDKSILADLLLHNEEDLLGMLKVAEMLSFI 197

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
              N +    E ++    + L+ +     
Sbjct: 198 DFFNSNFILYESRRDEQKLYLVYKSSEYI 226


>gi|326470961|gb|EGD94970.1| RNA exonuclease Rex2 [Trichophyton tonsurans CBS 112818]
 gi|326482205|gb|EGE06215.1| RNA exonuclease Rex2 [Trichophyton equinum CBS 127.97]
          Length = 188

 Score = 41.8 bits (96), Expect = 0.074,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 12 FDIETTGLDSKNDRIIEIGA 31
           D E TGLD  NDRI++I  
Sbjct: 13 IDCEMTGLDPANDRILQICC 32


>gi|226372150|gb|ACO51700.1| Histone mRNA 3-exonuclease 1 [Rana catesbeiana]
          Length = 348

 Score = 41.8 bits (96), Expect = 0.074,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 16/189 (8%)

Query: 11  VFDIETT--GLDSKN--DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T  G ++ +    IIE   V L   + +   TFQ ++ P  +   S   + L G
Sbjct: 131 IIDFEATCEGGNATDYVHEIIEFPIVLLNTRTLEIEDTFQRYVKPEIKPQLSEFCINLTG 190

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +     D+  ++              + +    +       +    
Sbjct: 191 ITQDIIDQADTFPVVLQSVVDWMRQKELGTKYKYAILTDGSWDMSKFLNMQCRVSRIKYP 250

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P ++  L  + ++ G++      H  L DS  ++ + I M+
Sbjct: 251 RFAKKWINIRKCYGNFYKVPRNQTKLTVMLEKLGMSYI-GRLHSGLDDSKNIARIAIHML 309

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 310 QDGCELRVN 318


>gi|219681916|ref|YP_002468302.1| oligoribonuclease [Buchnera aphidicola str. 5A (Acyrthosiphon
          pisum)]
 gi|219682471|ref|YP_002468855.1| oligoribonuclease [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
          pisum)]
 gi|257471622|ref|ZP_05635621.1| oligoribonuclease [Buchnera aphidicola str. LSR1 (Acyrthosiphon
          pisum)]
 gi|219622204|gb|ACL30360.1| oligoribonuclease [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
          pisum)]
 gi|219624759|gb|ACL30914.1| oligoribonuclease [Buchnera aphidicola str. 5A (Acyrthosiphon
          pisum)]
 gi|311086294|gb|ADP66376.1| oligoribonuclease [Buchnera aphidicola str. LL01 (Acyrthosiphon
          pisum)]
 gi|311087458|gb|ADP67538.1| oligoribonuclease [Buchnera aphidicola str. JF99 (Acyrthosiphon
          pisum)]
          Length = 184

 Score = 41.8 bits (96), Expect = 0.074,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          ++ NK   I  D+E TGL+ K  RIIEI 
Sbjct: 1  MKINKKNLIWIDLEMTGLNPKVHRIIEIA 29


>gi|330503165|ref|YP_004380034.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina
           NK-01]
 gi|328917451|gb|AEB58282.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina
           NK-01]
          Length = 182

 Score = 41.8 bits (96), Expect = 0.075,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 5/113 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E TT   G   +   IIEIGA  +         FQ  + P  R   +    +L 
Sbjct: 4   WLVIDLEATTDEGGWPMEEMEIIEIGASLVGVDGHERDHFQRIVKPQRRPCLTDFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            IT   +        ++++F  +  +     +  ++  D      E +     
Sbjct: 64  HITQSDVDSAAPMPQVWAQFERWLTQHAPRLVGWSSWGDYDRRQLEQEWRQHH 116


>gi|294790670|ref|ZP_06755828.1| oligoribonuclease [Scardovia inopinata F0304]
 gi|294458567|gb|EFG26920.1| oligoribonuclease [Scardovia inopinata F0304]
          Length = 242

 Score = 41.8 bits (96), Expect = 0.075,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 60/220 (27%), Gaps = 6/220 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I  D E TGLD  +D + E+  V    + +  +R   + + P+          +  + 
Sbjct: 22  RLIWIDCEMTGLDIDHDELCEVSVVPTDFNLTVLDRGIDLVIKPSQGALDHMGDFVRHMH 81

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                 +     +     +    +               +       +K  LD       
Sbjct: 82  TVSGLLEQMKEGLVLGQAEKQVIEYVRPFLPEEGQGKAHLAGNTIGSDKKFLDKFMPGLM 141

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF--- 183
             +  R    S     S      +  +   KHG       + +   + +    Q  F   
Sbjct: 142 GLLHYRTIDVSTLKELSRRWYPQVYSNRPVKHGGHRALADIIESIDE-LRYYRQSMFLPQ 200

Query: 184 -GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
            G   N+      + +    +   +R+    T  T  E  
Sbjct: 201 PGLSANQAAAVCAQIEETSLLRTYEREGDPLTETTSAEKK 240


>gi|241759454|ref|ZP_04757558.1| oligoribonuclease Orn [Neisseria flavescens SK114]
 gi|241320236|gb|EER56569.1| oligoribonuclease Orn [Neisseria flavescens SK114]
          Length = 185

 Score = 41.8 bits (96), Expect = 0.075,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 9/181 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+E TGL+ ++DRIIE+  +       T+    V    +          L+G+ +    
Sbjct: 11  LDMEMTGLNPEHDRIIEVAMI------ITDSNLNVLAQSDVYVIHQSDELLNGMDEWNTT 64

Query: 72  DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                            E   +       +A             I++D     + +  L 
Sbjct: 65  THGRTGLTQRVRESKLTEAEVEQNLLGFMSAWIPEKSTPMCGNSIHQDRRFMVKYMPRLE 124

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     + L  L KR+   ++          +       I+ M    +      + 
Sbjct: 125 AYFHYRNLDVSTLKELAKRWNPAVAKSVVKRGSHKALDDILESIEEMRHYREHFLKLPSE 184

Query: 189 E 189
           +
Sbjct: 185 Q 185


>gi|224049609|ref|XP_002196066.1| PREDICTED: three prime histone mRNA exonuclease 1 [Taeniopygia
           guttata]
          Length = 387

 Score = 41.8 bits (96), Expect = 0.075,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 59/183 (32%), Gaps = 16/183 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKN-SPEALKLHG 64
           V D E T   G   +    IIE   V +   +     TFQ ++ P      S   + L G
Sbjct: 170 VVDFEATCEEGNPPEFVHEIIEFPVVLVNTRTLEIEDTFQQYVKPEINPKLSDFCISLTG 229

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115
           IT + +     F  +     ++  ++              + +    +       +    
Sbjct: 230 ITQDIVDKADIFPQVLQNVIEWMRQRELGTKYSYSMLTDGSWDMSKFLNTQCRISRIKYP 289

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P ++  L  + +  G+    R  H  L DS  ++ + I+M+
Sbjct: 290 SFAKKWINIRKSYGNFYKVPRNQTKLTIMLENLGMNYDGRP-HSGLDDSKNIARIAIRML 348

Query: 176 VGG 178
             G
Sbjct: 349 QDG 351


>gi|72161431|ref|YP_289088.1| hypothetical protein Tfu_1027 [Thermobifida fusca YX]
 gi|71915163|gb|AAZ55065.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX]
          Length = 590

 Score = 41.8 bits (96), Expect = 0.075,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 59/171 (34%), Gaps = 2/171 (1%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
           G       +IE+GAV L D    +  F   + P+    +   L     T          +
Sbjct: 57  GTHPATAALIEVGAVRLRDGQVLDE-FTTLVNPHAPVPASITLLTGITTAMVESAPSPAA 115

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS 137
           ++ +             +AHNA FDV F+ A   R          ++DTL +ARR  P  
Sbjct: 116 ALSAFLDFAGFRPGTVLVAHNAPFDVRFLKAACARHGIPWP-SPAVLDTLQLARRLVPRG 174

Query: 138 RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
               + L     +  +H   H AL D+   +DV   ++             
Sbjct: 175 EVRNHRLDTLARVFGAHPPAHRALDDARATADVLRGLVGRLRARGVDTWEE 225


>gi|52425567|ref|YP_088704.1| oligoribonuclease [Mannheimia succiniciproducens MBEL55E]
 gi|59798011|sp|Q65SE1|ORN_MANSM RecName: Full=Oligoribonuclease
 gi|52307619|gb|AAU38119.1| Orn protein [Mannheimia succiniciproducens MBEL55E]
          Length = 186

 Score = 41.8 bits (96), Expect = 0.075,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 15/19 (78%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +N+RIIEI 
Sbjct: 11 IDLEMTGLDPENERIIEIA 29


>gi|86139894|ref|ZP_01058460.1| exonuclease I [Roseobacter sp. MED193]
 gi|85823523|gb|EAQ43732.1| exonuclease I [Roseobacter sp. MED193]
          Length = 459

 Score = 41.8 bits (96), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 56/224 (25%), Gaps = 14/224 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  + +D+ETTG+  + D+ ++  A+   +         +               +    
Sbjct: 1   MDFVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDRVNIRCRLAPHILPSPQALVVTRV 60

Query: 67  DEFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                  PS  S+F          +            + F    L++     L P+    
Sbjct: 61  TPDQLIDPSLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQNLSPNIYAT 120

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             +   R          +  +  G+ +                    K+        F  
Sbjct: 121 QFNGNTRFDILPAVY-AAYVRHPGLLVWPTDD---------TGRRSFKLDRLAPANGFNA 170

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
               D     E        +  R   L++ +     + H   +Q
Sbjct: 171 HNAHDALGDVEATIHIARLIATRSPALWSELID---NAHKARVQ 211


>gi|308389962|gb|ADO32282.1| putative oligoribonuclease [Neisseria meningitidis alpha710]
          Length = 215

 Score = 41.8 bits (96), Expect = 0.076,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ + DRIIE+  +
Sbjct: 38 LDMEMTGLNPETDRIIEVAMI 58


>gi|325114145|emb|CBZ49703.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 496

 Score = 41.8 bits (96), Expect = 0.077,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 65/243 (26%), Gaps = 31/243 (12%)

Query: 13  DIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           D+ETTGL  ++  I +IG V     D       +  ++     +++   L          
Sbjct: 257 DLETTGLCIQSCEITQIGCVPRLFRDGR-----WH-YVNCPVLRDAEAHLWGEPHVFSAY 310

Query: 71  KDKPSFSSIFSEFWDFF------------------NEQNAEWIAHNAKFDVGFINAELQR 112
               S+                                 A+ IA++  +DV         
Sbjct: 311 IRIHSWIPKKVRDLTGITKALLNKKGIPLETALLKWAGWAQKIANSLDYDVPIWFVAHSG 370

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT---ISHRSKHGALLDSHLLSD 169
            + D     R   +   A +         +  C+    T               SH LS 
Sbjct: 371 SSFDIPVLLRHETSTRTALKMFSRGCFFRHVGCEYTVDTLTLSRALPWPNVREQSHSLSL 430

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
           +Y ++       N       D     E        L    +    R   EE + + + ++
Sbjct: 431 LYAQLTGRSRDRNDEHNAVGDSIALAELMGKEPF-LSAWQRMKVGRKLCEEFE-YQRRLK 488

Query: 230 TLG 232
            L 
Sbjct: 489 FLN 491


>gi|313682834|ref|YP_004060572.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155694|gb|ADR34372.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 293

 Score = 41.8 bits (96), Expect = 0.077,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 56/183 (30%), Gaps = 7/183 (3%)

Query: 7   MRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR  I+ D ETTG   + DRI ++  +   +  +          P    +       H  
Sbjct: 1   MRHTIILDTETTGAG-EVDRICQLSYLVCDEKGEILELHNDLCTPPLPISFEAMAIHHIT 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +          +         N  +   +  NA+FD+G +  E   +    +D  R++ 
Sbjct: 60  PEMLTGAPKCIETSAFNRLAELNTPDNLMVIQNAEFDLGMLAKEGMGLEMKLVDTFRVLR 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHR-----SKHGALLDSHLLSDVYIKMMVGGSQ 180
                   H                 +  +       H AL D  +L  +Y K++   + 
Sbjct: 120 AWHPLDTPHGLQFKRYQWGLYHKEQPLIDKLGIEIKAHDALGDVIVLKHLYEKLLESHNA 179

Query: 181 INF 183
              
Sbjct: 180 EGM 182


>gi|46190895|ref|ZP_00206604.1| COG1949: Oligoribonuclease (3'->5' exoribonuclease)
           [Bifidobacterium longum DJO10A]
 gi|189440035|ref|YP_001955116.1| Oligoribonuclease [Bifidobacterium longum DJO10A]
 gi|189428470|gb|ACD98618.1| Oligoribonuclease [Bifidobacterium longum DJO10A]
          Length = 214

 Score = 41.8 bits (96), Expect = 0.077,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 3/132 (2%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D ETTGLD     ++E+G       ++T   +  + + P+  +N   A     +    +
Sbjct: 29  IDTETTGLDPNQCELLEVGMQVTDLKAETRGGSLHLIVHPDNVRN--WANHPEMLKAYEM 86

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                     +E      +     +  +   +       L     +     R +D     
Sbjct: 87  HLANGLMLACAEAPKTGYDYKHTALNIHEFLNDQLSQYTLHPAGTNVDFDLRQLDVHLSR 146

Query: 131 RRKHPSSRNDLN 142
             +HP ++   +
Sbjct: 147 HLEHPITQGLHH 158


>gi|331245678|ref|XP_003335475.1| hypothetical protein PGTG_17328 [Puccinia graminis f. sp. tritici
          CRL 75-36-700-3]
 gi|309314465|gb|EFP91056.1| hypothetical protein PGTG_17328 [Puccinia graminis f. sp. tritici
          CRL 75-36-700-3]
          Length = 200

 Score = 41.8 bits (96), Expect = 0.077,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 7/34 (20%)

Query: 12 FDIETTGLDSKNDRIIEIGAV-------ELLDYS 38
           D E TGLD   D+IIEI  +       EL D  
Sbjct: 18 IDCEMTGLDVTVDQIIEIACIITDKDLKELDDGI 51


>gi|291164801|gb|ADD80831.1| oligoribonuclease [Rhodococcus phage ReqiDocB7]
          Length = 207

 Score = 41.8 bits (96), Expect = 0.077,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 48/182 (26%), Gaps = 15/182 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA------VELLDY----SKTNRTFQVFLCPNGRKNSPE 58
            I+ D+ETTGL      I+E+G       +E++D       T++++        R     
Sbjct: 6   FILLDLETTGLKPSEGHILELGMALYSPQLEMIDAFQSVCLTDQSYSFL-----RGAPGS 60

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                G     +       +   +        +         + V        + N    
Sbjct: 61  EDWKSGNVAYDMHVNSGLLAEVMDLSKQDILGDGNDFGPYHLYTVMHDAINWLKSNDVER 120

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                  ++   R        +  +    Y             + +  L +  +K++   
Sbjct: 121 GHPLCGSSIHFDREWLNFFGTEEFNGYFHYRNIDFSSISEHTKVINPKLYEKAMKLLAPT 180

Query: 179 SQ 180
             
Sbjct: 181 KS 182


>gi|94676725|ref|YP_589014.1| oligoribonuclease [Baumannia cicadellinicola str. Hc (Homalodisca
          coagulata)]
 gi|172046199|sp|Q1LSQ0|ORN_BAUCH RecName: Full=Oligoribonuclease
 gi|94219875|gb|ABF14034.1| oligoribonuclease [Baumannia cicadellinicola str. Hc (Homalodisca
          coagulata)]
          Length = 184

 Score = 41.8 bits (96), Expect = 0.077,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+ + DRI+EI 
Sbjct: 10 IDLEMTGLNPEQDRILEIA 28


>gi|307544322|ref|YP_003896801.1| oligoribonuclease [Halomonas elongata DSM 2581]
 gi|307216346|emb|CBV41616.1| oligoribonuclease [Halomonas elongata DSM 2581]
          Length = 197

 Score = 41.8 bits (96), Expect = 0.078,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIG 30
          R +  D+E TGLD + +RIIE+ 
Sbjct: 14 RLVWIDLEMTGLDPERERIIEVA 36


>gi|260903685|ref|ZP_05912007.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium linens BL2]
          Length = 578

 Score = 41.8 bits (96), Expect = 0.078,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVE 33
           R + FD+ETTG+D    RI+    VE
Sbjct: 360 RLVGFDLETTGVDPATARIVTAAFVE 385


>gi|239995038|ref|ZP_04715562.1| ribonuclease T [Alteromonas macleodii ATCC 27126]
          Length = 49

 Score = 41.8 bits (96), Expect = 0.078,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL 35
          +V D+ET G ++  D ++E+ AV + 
Sbjct: 18 VVIDVETAGFNAGTDALLELAAVTVK 43


>gi|269120725|ref|YP_003308902.1| exonuclease RNase T and DNA polymerase III [Sebaldella termitidis
           ATCC 33386]
 gi|268614603|gb|ACZ08971.1| Exonuclease RNase T and DNA polymerase III [Sebaldella termitidis
           ATCC 33386]
          Length = 195

 Score = 41.8 bits (96), Expect = 0.078,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 58/179 (32%), Gaps = 15/179 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFL--CPN-----GRKN 55
             + FD+ET G       ++ I A+++    +  +      +  F    P      G  N
Sbjct: 4   NIVFFDVETNG--KVGSSVLSISAIKVNFNGEIQKWEKVGEYDRFYFRNPGEAINMGAIN 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
                             P       E +  F +  A ++AHN KFD  FI   L+    
Sbjct: 62  VNGLTDDVLEKKREGTIYPVHFKDDIESFYSFCQDTAHYVAHNIKFDRSFIPFMLKNQFD 121

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             L+   I+                LN   + Y I     S H +L D  +   V+ KM
Sbjct: 122 TMLENVEIVKAGINEYYGT-YKWPKLNECARFYNIPFDDSSLHESLYDVLITFRVFYKM 179


>gi|71900855|ref|ZP_00682972.1| Exonuclease [Xylella fastidiosa Ann-1]
 gi|71729379|gb|EAO31493.1| Exonuclease [Xylella fastidiosa Ann-1]
          Length = 193

 Score = 41.8 bits (96), Expect = 0.078,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 49/176 (27%), Gaps = 9/176 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66
           R I  D+E TGLD+  D IIEI  V       T+    V    P    + P  +      
Sbjct: 13  RLIWIDLEMTGLDTHRDSIIEIATV------VTDAQLNVLAEGPEFAISHPLNVLEAMDE 66

Query: 67  DEFLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
               + + S  +  + +        + +           G        I +D     R +
Sbjct: 67  WNRNQHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKTGASPMCGNSICQDRRFLHRQM 126

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             L           + L  L   +  +I       +   +       I  +    +
Sbjct: 127 PCLERYFHYRNLDVSTLKELAGCWSPSILDGVVKTSSHTALSDIYDSIAELRHYRK 182


>gi|298252322|ref|ZP_06976124.1| Exonuclease RNase T and DNA polymerase III [Ktedonobacter racemifer
           DSM 44963]
 gi|297545742|gb|EFH79611.1| Exonuclease RNase T and DNA polymerase III [Ktedonobacter racemifer
           DSM 44963]
          Length = 471

 Score = 41.8 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 14/171 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTGLDS+ D+II+  AV   +          ++ P     S  A ++HGIT+  L 
Sbjct: 27  FDSETTGLDSE-DQIIQW-AVCNQEGQLLG---SGYIKP-TVPISEGAFEIHGITEAQLA 80

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI-- 129
           + P F+  +    D         + +N+ FD+G + +  +             +      
Sbjct: 81  NAPLFAESWPTIRDLLTASGKTVVIYNSNFDIGMLWSSARAHGIPMRWDEIKAECAMQLF 140

Query: 130 ------ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                       S      +    +         H A  D+   + +  ++
Sbjct: 141 ASFYGEYHEYWGSYTWQKLTTAISHLNITVPGEAHNAEHDAAATAHIIRQL 191


>gi|260577531|ref|ZP_05845471.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium
          ATCC 43734]
 gi|258604335|gb|EEW17572.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium
          ATCC 43734]
          Length = 214

 Score = 41.8 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS 38
          FD+ETTG+D K  RI+    V +    
Sbjct: 4  FDLETTGVDPKTARIVTSALVTIKGRE 30


>gi|227549657|ref|ZP_03979706.1| conserved hypothetical protein [Corynebacterium lipophiloflavum
          DSM 44291]
 gi|227078234|gb|EEI16197.1| conserved hypothetical protein [Corynebacterium lipophiloflavum
          DSM 44291]
          Length = 98

 Score = 41.8 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 3/81 (3%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +   + TTG+     R++ I AV   D       F          + P     HG+   
Sbjct: 7  YVAVSVVTTGIHPSTGRLLTIDAVTFDDDGAIGEEFHSVF---STGSDPGPRHNHGLEPG 63

Query: 69 FLKDKPSFSSIFSEFWDFFNE 89
               P FS          ++
Sbjct: 64 DFAQAPRFSRHLKTLDRLIDD 84


>gi|94984265|ref|YP_603629.1| exonuclease, RNase T and DNA polymerase III [Deinococcus
           geothermalis DSM 11300]
 gi|94554546|gb|ABF44460.1| exonuclease domain in DNA-polymerase alpha and epsilon chain,
           ribonuclease T [Deinococcus geothermalis DSM 11300]
          Length = 188

 Score = 41.8 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 5/171 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--- 66
           I  D ET G D     ++ +G V L    +  R   + +     +   EA+ ++GI    
Sbjct: 15  IFVDTETGGRDPARHPLLTVGLVTLTPQGEVTRPLHLRVRHEHYEVEEEAMAVNGIDLAT 74

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                  P   +     +     +      HN  +D+GF+   L  +             
Sbjct: 75  HHATAQAPEEVAEAVRAYARAVGRVM-LGGHNLAYDLGFLRWLLPDLKSIFRRGRVDTKL 133

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITIS-HRSKHGALLDSHLLSDVYIKMMV 176
            +            + +   +           H AL D+ + + VY +++ 
Sbjct: 134 TAQFLLHAGILPRKVGTPLDQLAKYFGLAYQAHDALEDARVTAWVYAELLR 184


>gi|297625994|ref|YP_003687757.1| Oligoribonuclease [Propionibacterium freudenreichii subsp.
          shermanii CIRM-BIA1]
 gi|296921759|emb|CBL56317.1| Oligoribonuclease [Propionibacterium freudenreichii subsp.
          shermanii CIRM-BIA1]
          Length = 223

 Score = 41.8 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD  ND +IE+  +              V + P+          +  + 
Sbjct: 5  IDCEMTGLDLANDELIEVACLVTDGELNVQGDGIDVLVQPSKHALDHMGEFVTEMH 60


>gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
 gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
          Length = 653

 Score = 41.8 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 6/32 (18%)

Query: 11  VFDIETTGLDSKND--RIIEIGA----VELLD 36
             D ETTGLD  +D  R+I+I A    V ++D
Sbjct: 100 AIDTETTGLDPHSDRLRLIQISAPGIPVLVID 131


>gi|282598821|ref|YP_003359140.1| putative exonuclease [Clavibacter phage CMP1]
 gi|262212609|gb|ACY35945.1| putative exonuclease [Clavibacter phage CMP1]
          Length = 236

 Score = 41.8 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ-VFLCPNGRKNSPEALKLHGITDEF 69
          VFD ET+G+D +NDRI+    + L+D   T   F    + P G      A  +HGIT E 
Sbjct: 9  VFDTETSGVDVENDRIVT-AFIGLMDPDGTMTEFHEWLIDP-GIPIPEGASDIHGITTEK 66

Query: 70 LK 71
            
Sbjct: 67 AH 68


>gi|170782319|ref|YP_001710652.1| DNA polymerase III subunit epsilon [Clavibacter michiganensis
          subsp. sepedonicus]
 gi|169156888|emb|CAQ02056.1| putative exonuclease [Clavibacter michiganensis subsp.
          sepedonicus]
          Length = 233

 Score = 41.8 bits (96), Expect = 0.080,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
          FD+ETTG+D +  RI+    V L    +          P 
Sbjct: 12 FDLETTGVDVETARIVTACIVVLDAQGEVVERHDWLADPG 51


>gi|94500535|ref|ZP_01307066.1| oligoribonuclease [Oceanobacter sp. RED65]
 gi|94427325|gb|EAT12304.1| oligoribonuclease [Oceanobacter sp. RED65]
          Length = 185

 Score = 41.8 bits (96), Expect = 0.080,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 16/26 (61%)

Query: 5  NKMRKIVFDIETTGLDSKNDRIIEIG 30
          NK   I  D+E TGL+   DRIIEI 
Sbjct: 8  NKHNLIWIDLEMTGLEPAQDRIIEIA 33


>gi|26379605|dbj|BAB29127.2| unnamed protein product [Mus musculus]
          Length = 345

 Score = 41.8 bits (96), Expect = 0.080,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T   G  ++    IIE   V L  ++     TFQ ++ P      S   + L G
Sbjct: 128 IIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNDQLSEFCIGLTG 187

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +  +  ++                  + +    +       +  + 
Sbjct: 188 ITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLSRLKHP 247

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G+    R  H  L DS  ++ + I+M+
Sbjct: 248 AFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAIRML 306

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 307 QDGCELRIN 315


>gi|306819092|ref|ZP_07452806.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus
           mulieris ATCC 35239]
 gi|304648068|gb|EFM45379.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus
           mulieris ATCC 35239]
          Length = 305

 Score = 41.8 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 7   MRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLH 63
           MR+ +  D ET   + +      +G V      K + ++   L P+      +P  + +H
Sbjct: 3   MREFVAIDFET--ANEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWVH 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E ++D P +S I  +   F  +     +AHN  FD   ++        + +   R 
Sbjct: 61  GITSEDVQDAPQWSDIADQVMTFIGD--RPIVAHNMAFDGYVLSDLASLYGTEEIPNRRF 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                  +                Y         H A  D+     ++ +M     Q  F
Sbjct: 119 CTVRLARKILADKLERKTLDEVFDYYFPGEVFDHHHADADAQAAGMIFARM-----QHEF 173

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           GF+   +     +    P I    R      ++  EEL +
Sbjct: 174 GFEKLSELCPPTKNSHKPPIHPGMRSD----QLAAEELIK 209


>gi|306835906|ref|ZP_07468899.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
          49726]
 gi|304568180|gb|EFM43752.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
          49726]
          Length = 233

 Score = 41.8 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39
          R + FD+ETT  + K+ RI+    V +     
Sbjct: 17 RMLAFDLETTSANPKDARIVTSALVRIDGRDV 48


>gi|269977446|ref|ZP_06184418.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
 gi|269934362|gb|EEZ90924.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
          Length = 303

 Score = 41.8 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 7   MRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLH 63
           MR+ +  D ET   + +      +G V      K + ++   L P+      +P  + +H
Sbjct: 1   MREFVAIDFET--ANEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWVH 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E ++D P +S I  +   F  +     +AHN  FD   ++        + +   R 
Sbjct: 59  GITSEDVQDAPQWSDIADQVMTFIGD--RPIVAHNMAFDGYVLSDLASLYGTEEIPNRRF 116

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                  +                Y         H A  D+     ++ +M     Q  F
Sbjct: 117 CTVRLARKILADKLERKTLDEVFDYYFPGEVFDHHHADADAQAAGMIFARM-----QHEF 171

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           GF+   +     +    P I    R      ++  EEL +
Sbjct: 172 GFEKLSELCPPTKNSHKPPIHPGMRSD----QLAAEELIK 207


>gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
 gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
          Length = 662

 Score = 41.8 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 8/42 (19%)

Query: 10  IV-FDIETTGLDSKNDRI--IEIGA-----VELLDYSKTNRT 43
           +V  DIETTGLD     I  I+I A     + +     TN+ 
Sbjct: 68  VVGLDIETTGLDPHTSEISLIQIAAPNRPVILIEFRGITNKE 109


>gi|224124082|ref|XP_002330100.1| predicted protein [Populus trichocarpa]
 gi|222871234|gb|EEF08365.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 41.8 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 12/102 (11%)

Query: 4  KNKMRKIVFDIETT-----GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCP-NGRKNS 56
          +NK     FD+ETT     G   +   I+E GA+ +        R++   + P N +  S
Sbjct: 2  ENKTEIAFFDVETTVPTRPG---QGYAILEFGAILVCPQKLEEIRSYSTLVRPSNPKLIS 58

Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98
            +++ +GI  E +   PSF+ I    +D  +     W  HN
Sbjct: 59 SLSVRCNGIIPEAVVSAPSFADIADTVYDILHG--RIWAGHN 98


>gi|255324551|ref|ZP_05365668.1| DNA polymerase III subunit epsilon [Corynebacterium
          tuberculostearicum SK141]
 gi|255298457|gb|EET77757.1| DNA polymerase III subunit epsilon [Corynebacterium
          tuberculostearicum SK141]
          Length = 223

 Score = 41.8 bits (96), Expect = 0.082,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39
          R + FD+ETT  + K  RI+    V +     
Sbjct: 7  RMLAFDLETTSANPKEARIVTSALVRIDGRDV 38


>gi|227548676|ref|ZP_03978725.1| oligoribonuclease [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079239|gb|EEI17202.1| oligoribonuclease [Corynebacterium lipophiloflavum DSM 44291]
          Length = 211

 Score = 41.8 bits (96), Expect = 0.082,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD     I+E+ A+
Sbjct: 11 RIVWIDLEMTGLDPDKHVIVEVAAL 35


>gi|328675229|gb|AEB27904.1| Oligoribonuclease [Francisella cf. novicida 3523]
          Length = 178

 Score = 41.8 bits (96), Expect = 0.083,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD  N RIIEI A+
Sbjct: 10 IDLEMTGLDVDNCRIIEIAAI 30


>gi|260556115|ref|ZP_05828334.1| oligoribonuclease Orn [Acinetobacter baumannii ATCC 19606]
 gi|260410170|gb|EEX03469.1| oligoribonuclease Orn [Acinetobacter baumannii ATCC 19606]
          Length = 163

 Score = 41.8 bits (96), Expect = 0.083,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37
          M      R I  D+E TGLD+ ND+IIEI  +   D+
Sbjct: 1  MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDH 37


>gi|217980123|ref|YP_002364173.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
 gi|217508294|gb|ACK55079.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
          Length = 201

 Score = 41.8 bits (96), Expect = 0.083,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 13/169 (7%)

Query: 11  VFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + D ETTGL    D   ++E+  ++              + P+G     EA  +HGITD 
Sbjct: 24  ILDTETTGL---GDDAEVVELAVIDCAGAVL----LDTLVRPSG-PVPAEAAAIHGITDA 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P++S + + F      +      +N +FDV  I+   +R           +    
Sbjct: 76  MLAGAPTWSELHARFCGLVEGRQVV--IYNHEFDVRVISQTARRYGLQAPQGFDQVLDPG 133

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                  +            G     +    A     +  +   + +  
Sbjct: 134 RIHCAMQAYAEFRGEWSAEKGQYRWQKLSAAAQQQG-VTVENAHRALGD 181


>gi|225438656|ref|XP_002277040.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296082445|emb|CBI21450.3| unnamed protein product [Vitis vinifera]
          Length = 303

 Score = 41.8 bits (96), Expect = 0.083,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 10 IVFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNG 52
          + FD+ETT  +    R  ++E GA+ +         ++   + P  
Sbjct: 16 VFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTLIRPGD 61


>gi|147791948|emb|CAN61478.1| hypothetical protein VITISV_013817 [Vitis vinifera]
          Length = 293

 Score = 41.8 bits (96), Expect = 0.083,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 10 IVFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNG 52
          + FD+ETT  +    R  ++E GA+ +         ++   + P  
Sbjct: 49 VFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTLIRPGD 94


>gi|121705836|ref|XP_001271181.1| RNA exonuclease Rex2, putative [Aspergillus clavatus NRRL 1]
 gi|119399327|gb|EAW09755.1| RNA exonuclease Rex2, putative [Aspergillus clavatus NRRL 1]
          Length = 217

 Score = 41.8 bits (96), Expect = 0.083,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD + D+I++I   +   + +  +RT F+  +          +       
Sbjct: 13 IDCEMTGLDPETDQILQICCYITDANLTLLDRTGFETIIHHPRSTLEAMSPWCIDTH 69


>gi|300780594|ref|ZP_07090449.1| oligoribonuclease [Corynebacterium genitalium ATCC 33030]
 gi|300533580|gb|EFK54640.1| oligoribonuclease [Corynebacterium genitalium ATCC 33030]
          Length = 217

 Score = 41.8 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD +   I+E+ A+
Sbjct: 18 RIVWIDLEMTGLDPQRHVIVEVAAL 42


>gi|299144369|ref|ZP_07037449.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386
          str. F0131]
 gi|298518854|gb|EFI42593.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386
          str. F0131]
          Length = 312

 Score = 41.8 bits (96), Expect = 0.085,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 23/40 (57%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN 41
          I KN    IV DIETTGL  K D I  IG +E+   +KT 
Sbjct: 20 ILKNFKNSIVLDIETTGLSRKYDAIFLIGIIEIEKNTKTK 59


>gi|294139250|ref|YP_003555228.1| oligoribonuclease [Shewanella violacea DSS12]
 gi|293325719|dbj|BAJ00450.1| oligoribonuclease [Shewanella violacea DSS12]
          Length = 181

 Score = 41.8 bits (96), Expect = 0.085,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + DR+IEI 
Sbjct: 11 VDLEMTGLDPETDRVIEIA 29


>gi|330876090|gb|EGH10239.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|330964631|gb|EGH64891.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 180

 Score = 41.8 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E TT   G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCKELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            I    +      ++++ +F  + +   A  +   +  D      E +  +  
Sbjct: 64  HINQSNIDSAAPLTTVWPQFERWLSHHRARVVGWASWGDYDRQQLEEEWRHHQ 116


>gi|319944217|ref|ZP_08018493.1| oligoribonuclease [Lautropia mirabilis ATCC 51599]
 gi|319742512|gb|EFV94923.1| oligoribonuclease [Lautropia mirabilis ATCC 51599]
          Length = 236

 Score = 41.8 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGL    DRIIE+  V
Sbjct: 56 RLVWLDMEMTGLHPDIDRIIEVAMV 80


>gi|156972480|ref|YP_001443387.1| oligoribonuclease [Vibrio harveyi ATCC BAA-1116]
 gi|166216591|sp|A7MZ48|ORN_VIBHB RecName: Full=Oligoribonuclease
 gi|156524074|gb|ABU69160.1| hypothetical protein VIBHAR_00112 [Vibrio harveyi ATCC BAA-1116]
          Length = 181

 Score = 41.8 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD +  +IIEI ++
Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31


>gi|91228387|ref|ZP_01262313.1| oligoribonuclease [Vibrio alginolyticus 12G01]
 gi|91188028|gb|EAS74334.1| oligoribonuclease [Vibrio alginolyticus 12G01]
          Length = 181

 Score = 41.8 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD +  +IIEI ++
Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31


>gi|262393026|ref|YP_003284880.1| oligoribonuclease [Vibrio sp. Ex25]
 gi|262336620|gb|ACY50415.1| oligoribonuclease [Vibrio sp. Ex25]
          Length = 181

 Score = 41.8 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD +  +IIEI ++
Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31


>gi|299771588|ref|YP_003733614.1| oligoribonuclease [Acinetobacter sp. DR1]
 gi|298701676|gb|ADI92241.1| oligoribonuclease [Acinetobacter sp. DR1]
          Length = 188

 Score = 41.8 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37
          M      R I  D+E TGLD+ ND+IIEI  +   D+
Sbjct: 1  MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDH 37


>gi|15837858|ref|NP_298546.1| oligoribonuclease [Xylella fastidiosa 9a5c]
 gi|11133792|sp|Q9PDX2|ORN_XYLFA RecName: Full=Oligoribonuclease
 gi|9106239|gb|AAF84066.1|AE003959_8 oligoribonuclease [Xylella fastidiosa 9a5c]
          Length = 193

 Score = 41.8 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 46/176 (26%), Gaps = 9/176 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I  D+E TGLD+  D IIEI  V       T+    V         S     L  + +
Sbjct: 13  RLIWIDLEMTGLDTHRDSIIEIATV------VTDAQLNVLAEGPEFAISHPLQMLEAMDE 66

Query: 68  EFLKDKPS---FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                      +  + +        + +           G        I +D     R +
Sbjct: 67  WNRNQHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKTGASPMCGNSICQDRRFLHRQM 126

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             L           + L  L   +  +I       +   +       I  +    +
Sbjct: 127 PCLERYFHYRNLDVSTLKELAGCWAPSILDGVVKTSSHTALSDIYDSIAELRHYRK 182


>gi|315650719|ref|ZP_07903774.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487023|gb|EFU77350.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 220

 Score = 41.8 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 7  MRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEA 59
          M+ IV D+E   ++ K          IEIGA+ L +  +   +F+ ++ P    +  P  
Sbjct: 1  MKHIVVDLEMNSVEKKYKNLDCTMETIEIGAIMLDENYQEISSFRTYVKPEYNNRIRPLI 60

Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFF 87
           +L GIT + + + P F      F ++ 
Sbjct: 61 SRLTGITYDMVMNAPKFDEALKMFSNWC 88


>gi|254451818|ref|ZP_05065255.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
 gi|198266224|gb|EDY90494.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
          Length = 500

 Score = 41.8 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAV 32
          M  + +D+ETTGL    D+ ++  A+
Sbjct: 1  MDFVFYDLETTGLSPAFDQPLQFAAI 26


>gi|294506709|ref|YP_003570767.1| DNA polymerase III, epsilon chain [Salinibacter ruber M8]
 gi|294343037|emb|CBH23815.1| DNA polymerase III, epsilon chain [Salinibacter ruber M8]
          Length = 211

 Score = 41.8 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTG   + D +IE+G V               + P     +  A ++HGITDE 
Sbjct: 42  VFLDTETTGSGPQ-DAVIELGVVAAQGEVL----LHTLVAP-LAPVTRGARRVHGITDEE 95

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWI 95
           L D P F ++         +    W 
Sbjct: 96  LADAPPFPTVADRLDTVLADAECVWT 121


>gi|149041580|gb|EDL95421.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_e
          [Rattus norvegicus]
          Length = 113

 Score = 41.8 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|149041581|gb|EDL95422.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_f
          [Rattus norvegicus]
          Length = 154

 Score = 41.8 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|13097555|gb|AAH03502.1| REXO2 protein [Homo sapiens]
          Length = 79

 Score = 41.8 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|26355291|dbj|BAC41132.1| unnamed protein product [Mus musculus]
          Length = 121

 Score = 41.8 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|54310468|ref|YP_131488.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9]
 gi|46914911|emb|CAG21686.1| putative DNA polymerase III, epsilon subunit [Photobacterium
          profundum SS9]
          Length = 207

 Score = 41.8 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 10 IVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLC 49
          +  D ETT LD  +  ++ I A V   +   T+++  + L 
Sbjct: 31 VSVDCETTSLDPHSAELVTIAATVIKNNRILTSKSIHLTLR 71


>gi|321223519|gb|EFX48584.1| Putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 194

 Score = 41.8 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 54/175 (30%), Gaps = 10/175 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL   +  I+EI  ++   +          + P  +    EA+ +HGIT+E
Sbjct: 20  YLFIDTETTGLG-DDAEIVEICIIDSHGFIM----LNTLIKP-TKPIPDEAIAIHGITNE 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+++ I     + F         +NA FD+  I        +       ++    
Sbjct: 74  MVAFAPAWTDICGAVEEIFRRFGFV--IYNADFDLRLIRQTYALNERPSEGAPWMLAA-- 129

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            +               +  G          A     +    +  +      +  
Sbjct: 130 HSVCAMKLYAEYRGEPGRFNGYKWHKLVDAAAHEGVVVEDKAHRALADCKMTLGL 184


>gi|227501727|ref|ZP_03931776.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
          49725]
 gi|227077752|gb|EEI15715.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
          49725]
          Length = 223

 Score = 41.8 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39
          R + FD+ETT  + K+ RI+    V +     
Sbjct: 7  RMLAFDLETTSANPKDARIVTSALVRIDGRDV 38


>gi|148982513|ref|ZP_01816787.1| oligoribonuclease [Vibrionales bacterium SWAT-3]
 gi|145960438|gb|EDK25820.1| oligoribonuclease [Vibrionales bacterium SWAT-3]
          Length = 169

 Score = 41.8 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  +IIEI 
Sbjct: 11 VDLEMTGLDPETHKIIEIA 29


>gi|46447255|ref|YP_008620.1| hypothetical protein pc1621 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400896|emb|CAF24345.1| unknown protein [Candidatus Protochlamydia amoebophila UWE25]
          Length = 193

 Score = 41.8 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 5/153 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  DIE++GLDS + R +EI   +++D  +T      +         P  +      
Sbjct: 1   MLAIFLDIESSGLDSFHHRALEIAF-KVID-VRTGEERLTY---QSIVKQPLEVWEKRDL 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                +  ++  +     +   +     I ++ K   G      Q    D    S+I+D 
Sbjct: 56  ASIEINGFTWEKLLLGQEEAVVKSEIVQIFNDLKIQRGRAVYICQNPAFDRGFFSQIVDV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
            +  +   P    D  S+          +    
Sbjct: 116 YTQEKYHWPYHWLDFASMYWALQFKFYTQKHEH 148


>gi|329120336|ref|ZP_08249004.1| oligoribonuclease [Neisseria bacilliformis ATCC BAA-1200]
 gi|327462677|gb|EGF09000.1| oligoribonuclease [Neisseria bacilliformis ATCC BAA-1200]
          Length = 184

 Score = 41.8 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL  + DRIIE+  +
Sbjct: 12 LDMEMTGLSPETDRIIEVAVI 32


>gi|304414192|ref|ZP_07395560.1| oligoribonuclease (3'->5' exoribonuclease) [Candidatus Regiella
          insecticola LSR1]
 gi|304283406|gb|EFL91802.1| oligoribonuclease (3'->5' exoribonuclease) [Candidatus Regiella
          insecticola LSR1]
          Length = 181

 Score = 41.8 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + + K   I  D+E TGL  ++DRIIEI 
Sbjct: 1  MTEIKNNLIWIDLEMTGLYPEHDRIIEIA 29


>gi|254360517|ref|ZP_04976666.1| exoribonuclease II [Mannheimia haemolytica PHL213]
 gi|261492357|ref|ZP_05988919.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str.
          BOVINE]
 gi|261496143|ref|ZP_05992551.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str.
          OVINE]
 gi|153091057|gb|EDN73062.1| exoribonuclease II [Mannheimia haemolytica PHL213]
 gi|261308245|gb|EEY09540.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str.
          OVINE]
 gi|261312040|gb|EEY13181.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str.
          BOVINE]
          Length = 184

 Score = 41.8 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + +N+   I  D+E TGLD + +RIIEI 
Sbjct: 1  MAQNEQNLIWIDLEMTGLDPEKERIIEIA 29


>gi|68536400|ref|YP_251105.1| DNA polymerase III subunit epsilon [Corynebacterium jeikeium
          K411]
 gi|68263999|emb|CAI37487.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium
          K411]
          Length = 227

 Score = 41.8 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS 38
          FD+ETTG+D K  RI+    V +    
Sbjct: 17 FDLETTGVDPKTARIVTSALVTIKGRE 43


>gi|28198432|ref|NP_778746.1| oligoribonuclease [Xylella fastidiosa Temecula1]
 gi|182681104|ref|YP_001829264.1| oligoribonuclease [Xylella fastidiosa M23]
 gi|32129804|sp|Q87E07|ORN_XYLFT RecName: Full=Oligoribonuclease
 gi|28056516|gb|AAO28395.1| oligoribonuclease [Xylella fastidiosa Temecula1]
 gi|182631214|gb|ACB91990.1| Exonuclease RNase T and DNA polymerase III [Xylella fastidiosa M23]
 gi|307579552|gb|ADN63521.1| oligoribonuclease [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 193

 Score = 41.8 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 50/176 (28%), Gaps = 9/176 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66
           R I  D+E TGLD+  D IIEI  V       T+    V    P    + P  +      
Sbjct: 13  RLIWIDLEMTGLDTHRDSIIEIATV------VTDAQLNVLAEGPEFAISHPLNVLEAMDE 66

Query: 67  DEFLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
               + + S  +  + +        + +          +G        I +D     R +
Sbjct: 67  WNRNQHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKIGASPMCGNSICQDRRFLHRQM 126

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             L           + L  L   +  +I       +   +       I  +    +
Sbjct: 127 PCLERYFHYRNLDVSTLKELAGCWSPSILDGVVKTSSHTALSDIYDSIAELRHYRK 182


>gi|316985472|gb|EFV64419.1| exonuclease family protein [Neisseria meningitidis H44/76]
 gi|325139523|gb|EGC62063.1| oligoribonuclease [Neisseria meningitidis CU385]
 gi|325143758|gb|EGC66075.1| oligoribonuclease [Neisseria meningitidis M01-240013]
          Length = 203

 Score = 41.8 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ + DRIIE+  +
Sbjct: 26 LDMEMTGLNPETDRIIEVAMI 46


>gi|269964116|ref|ZP_06178417.1| oligoribonuclease [Vibrio harveyi 1DA3]
 gi|269831150|gb|EEZ85308.1| oligoribonuclease [Vibrio harveyi 1DA3]
          Length = 181

 Score = 41.8 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD +  +IIEI ++
Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31


>gi|154483908|ref|ZP_02026356.1| hypothetical protein EUBVEN_01613 [Eubacterium ventriosum ATCC
           27560]
 gi|149735399|gb|EDM51285.1| hypothetical protein EUBVEN_01613 [Eubacterium ventriosum ATCC
           27560]
          Length = 334

 Score = 41.8 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 69/202 (34%), Gaps = 9/202 (4%)

Query: 25  RIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFSE 82
            IIEIGAV +  D      +FQ  + P   +K   +  ++   T+E L D   F  +  +
Sbjct: 28  EIIEIGAVRVSDDRKTIVDSFQQVIKPRVFKKLHYKIQEITHFTEEELNDGKDFRKVIRD 87

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR-RKHPSSRNDL 141
           F ++  +        +        N +   + +    P   +D   +   R         
Sbjct: 88  FLEWCGDDYIFCTWGSMDLTELQKNMKHYNLERVLDFPLFYVDLQKMFSLRYDDGHMKRN 147

Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP 201
            +    Y         H AL D++  + +   M     +      T      KEE+  V 
Sbjct: 148 LTSAVEYLNIQEEHEFHRALSDAYYTARILQSMDYDKYKDRLSIDTFYSPRIKEEEIFVR 207

Query: 202 NISLLKRDKPLFTR--ITKEEL 221
                K    L TR  +TK+EL
Sbjct: 208 FDEYTK----LVTREFLTKDEL 225


>gi|312870293|ref|ZP_07730421.1| exonuclease [Lactobacillus oris PB013-T2-3]
 gi|311094177|gb|EFQ52493.1| exonuclease [Lactobacillus oris PB013-T2-3]
          Length = 178

 Score = 41.8 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 7/166 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET    +K      +    + D       F   + P         +++HGI 
Sbjct: 1   MNFIAMDFET--ASAKRYSACSLALTIVRDNQ-IADEFYTLINPQTPFF-WRNVQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + D P+F     E    F       IAHN +FD G + + L+    +P     +   
Sbjct: 57  ERDVADAPTF-PEVWEHIKGFYTPEKLVIAHNNRFDNGVLKSTLEHYGIEPPAYQTLDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +S  R     S   LN++C    I + H   H AL D+   +++ +
Sbjct: 116 VSSRRLLPGLSNYKLNTVCDALNIDLHH--HHNALDDAQACANILL 159


>gi|118602537|ref|YP_903752.1| ribonuclease T [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567476|gb|ABL02281.1| RNAse T [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 195

 Score = 41.8 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 19/190 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCP-- 50
           M+ K+++R    +V D ET G + K D ++EI A+     ++ +           + P  
Sbjct: 1   MLIKDRIRGYLPVVIDTETGGFNEKTDAMLEICAIVIGIDKMNNLYPKGSQ-HFHIEPFK 59

Query: 51  -NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF------NEQNAEWIAHNAKFDV 103
               ++S        + + F        +I   +   +      +   A  + HNA FD+
Sbjct: 60  GGMLESSALKFNGIDVDNPFRMAVKEIDAIKQIYTKVYAELKQESCTRAILVGHNAFFDL 119

Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           GF++A   R                     H        ++ K   I       H AL D
Sbjct: 120 GFLHAATDRCKLKSPFHQFSTLDTVSLSALHYGETVLAKAMRK-ANIEWDDSCAHSALYD 178

Query: 164 SHLLSDVYIK 173
           +   ++++ K
Sbjct: 179 TQKTAELFCK 188


>gi|307106672|gb|EFN54917.1| hypothetical protein CHLNCDRAFT_134628 [Chlorella variabilis]
          Length = 786

 Score = 41.8 bits (96), Expect = 0.093,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLH 63
          + FD+ET+GL  K   I E GAV     +    TF  ++C P G    PEA K  
Sbjct: 30 VAFDLETSGLG-KKACITEFGAV----GAGGTATFHEYVCLPPGVVMDPEATKTT 79


>gi|262273269|ref|ZP_06051084.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP
          101886]
 gi|262222642|gb|EEY73952.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP
          101886]
          Length = 207

 Score = 41.8 bits (96), Expect = 0.093,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          +  D ETT LD     ++ I A ++   +  
Sbjct: 31 VALDCETTSLDPHKAELVTIAATKIRGNTIV 61


>gi|73540610|ref|YP_295130.1| oligoribonuclease [Ralstonia eutropha JMP134]
 gi|72118023|gb|AAZ60286.1| Exonuclease [Ralstonia eutropha JMP134]
          Length = 210

 Score = 41.8 bits (96), Expect = 0.093,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL   +DRIIE+  V
Sbjct: 19 LDMEMTGLSPDSDRIIEVAVV 39


>gi|322381856|ref|ZP_08055810.1| ATP-dependent DNA helicase-like protein/DNA polymerase 3 subunit
           epsilon-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154244|gb|EFX46566.1| ATP-dependent DNA helicase-like protein/DNA polymerase 3 subunit
           epsilon-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 957

 Score = 41.8 bits (96), Expect = 0.094,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 84/219 (38%), Gaps = 7/219 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +    M+  V D E T   S  D II++G V + ++  T+R +   + P G +       
Sbjct: 1   METTGMKFAVLDFE-TTGTSTTDTIIQVGLVIIDEFDITDR-YTSLVNP-GVRIPSSITS 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++ PS   + ++ +   ++     +AH+A FD  F+   L +    P    
Sbjct: 58  LTGITDEMVENAPSVEKVMADLYPLLSD--CVLVAHHASFDHAFLQRSLTKAGYPPFTGR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +    ++           L  +C  +GI     + H A  D+ + ++++I++M     +
Sbjct: 116 VLDTIDALRVAFPSLGSFQLGHVCSLFGIEH--ENPHQANCDAQVTAELWIRIMQKLFGL 173

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
                    +        +       R          EE
Sbjct: 174 PLLTIQRISQILDPNVSDLGWFINEIRAYKELHTAEDEE 212


>gi|311740580|ref|ZP_07714407.1| DNA polymerase III subunit epsilon [Corynebacterium
          pseudogenitalium ATCC 33035]
 gi|311304100|gb|EFQ80176.1| DNA polymerase III subunit epsilon [Corynebacterium
          pseudogenitalium ATCC 33035]
          Length = 223

 Score = 41.8 bits (96), Expect = 0.094,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39
          R + FD+ETT  + K  RI+    V +     
Sbjct: 7  RMLAFDLETTSANPKEARIVTSALVRIDGRDV 38


>gi|269977107|ref|ZP_06184081.1| oligoribonuclease [Mobiluncus mulieris 28-1]
 gi|307700139|ref|ZP_07637185.1| oligoribonuclease [Mobiluncus mulieris FB024-16]
 gi|269934938|gb|EEZ91498.1| oligoribonuclease [Mobiluncus mulieris 28-1]
 gi|307614688|gb|EFN93911.1| oligoribonuclease [Mobiluncus mulieris FB024-16]
          Length = 208

 Score = 41.8 bits (96), Expect = 0.094,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50
           D E TGLD   D +IEIG +    + +  +    + + P
Sbjct: 15 VDCEMTGLDLATDELIEIGVIVTDFNLNPLDTGIDLLIKP 54


>gi|227875987|ref|ZP_03994110.1| exoribonuclease II [Mobiluncus mulieris ATCC 35243]
 gi|227843519|gb|EEJ53705.1| exoribonuclease II [Mobiluncus mulieris ATCC 35243]
          Length = 205

 Score = 41.8 bits (96), Expect = 0.094,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50
           D E TGLD   D +IEIG +    + +  +    + + P
Sbjct: 12 VDCEMTGLDLATDELIEIGVIVTDFNLNPLDTGIDLLIKP 51


>gi|260424856|ref|ZP_05779017.1| DNA polymerase III PolC-type [Dialister invisus DSM 15470]
 gi|260403394|gb|EEW96941.1| DNA polymerase III PolC-type [Dialister invisus DSM 15470]
          Length = 196

 Score = 41.5 bits (95), Expect = 0.094,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 65/171 (38%), Gaps = 9/171 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG+ S    I EI A+ ++   +   TF   +   G        +L GIT + L
Sbjct: 33  VMDIETTGMYSD---ITEIAALCVVSG-EIRDTFHTLVKAKG-PIEKRVERLTGITSDML 87

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINKDPLDPSRIIDTLS 128
           +++P    +   F  F           ++        + A  + +  +    +  +  L 
Sbjct: 88  EEQPPIDDVLPIFMTFIEGFPLVGHGLDSDLIVIDRNLKAVGKPLVTNDYIDTHSLAKLL 147

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +  R+    +  + +L + Y +     + H A+ D      ++ +++    
Sbjct: 148 LPEREGEHRKYSVKALAEYYELPC--STFHRAMDDCMAEKMLFERLLAEWK 196


>gi|254524227|ref|ZP_05136282.1| exonuclease [Stenotrophomonas sp. SKA14]
 gi|219721818|gb|EED40343.1| exonuclease [Stenotrophomonas sp. SKA14]
          Length = 188

 Score = 41.5 bits (95), Expect = 0.095,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 60/182 (32%), Gaps = 14/182 (7%)

Query: 7   MRKIVF-DIETTGLD--------SKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS 56
           M  I F D ETTGL              ++++ A  +     K   +  V + P+G    
Sbjct: 1   MSLIFFYDTETTGLPAFSEPSDAPHQPHLVQVAASLVNATTRKVISSIDVLVKPDGWTIP 60

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            E  ++HGIT+E  +      S+ +E        +   I H   FD   +   L+R    
Sbjct: 61  EEVTRIHGITNEQAEQCGLDESLVTELVLDMWRLSDVRIGHVESFDARILRIALKRYATA 120

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSL----CKRYGITISHRSKHGALLDSHLLSDVYI 172
            +       T     +   +      +       R+ +       H A  D     +++ 
Sbjct: 121 QVADEWKAGTAQCTAKAAKALMGMTKNPKLIDAHRHFLGREFDGAHTAHADMVACREIHW 180

Query: 173 KM 174
            M
Sbjct: 181 AM 182


>gi|148272897|ref|YP_001222458.1| DNA polymerase III subunit epsilon [Clavibacter michiganensis
          subsp. michiganensis NCPPB 382]
 gi|147830827|emb|CAN01769.1| putative DNA polymerase III , epsilon subunit [Clavibacter
          michiganensis subsp. michiganensis NCPPB 382]
          Length = 233

 Score = 41.5 bits (95), Expect = 0.095,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
          FD+ETTG+D +  RI+    V L    +          P 
Sbjct: 12 FDLETTGVDVETARIVTACIVVLDAQGEVLERHDWLADPG 51


>gi|28899597|ref|NP_799202.1| oligoribonuclease [Vibrio parahaemolyticus RIMD 2210633]
 gi|153840401|ref|ZP_01993068.1| oligoribonuclease [Vibrio parahaemolyticus AQ3810]
 gi|260876662|ref|ZP_05889017.1| oligoribonuclease [Vibrio parahaemolyticus AN-5034]
 gi|260902310|ref|ZP_05910705.1| oligoribonuclease [Vibrio parahaemolyticus AQ4037]
 gi|31076785|sp|Q87L01|ORN_VIBPA RecName: Full=Oligoribonuclease
 gi|28807833|dbj|BAC61086.1| oligoribonuclease [Vibrio parahaemolyticus RIMD 2210633]
 gi|149745937|gb|EDM57067.1| oligoribonuclease [Vibrio parahaemolyticus AQ3810]
 gi|308093946|gb|EFO43641.1| oligoribonuclease [Vibrio parahaemolyticus AN-5034]
 gi|308110954|gb|EFO48494.1| oligoribonuclease [Vibrio parahaemolyticus AQ4037]
          Length = 181

 Score = 41.5 bits (95), Expect = 0.095,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD +  +IIEI ++
Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31


>gi|119897809|ref|YP_933022.1| oligoribonuclease [Azoarcus sp. BH72]
 gi|166215750|sp|A1K5N0|ORN_AZOSB RecName: Full=Oligoribonuclease
 gi|119670222|emb|CAL94135.1| oligoribonuclease [Azoarcus sp. BH72]
          Length = 182

 Score = 41.5 bits (95), Expect = 0.096,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+   DRIIEI  V
Sbjct: 11 LDMEMTGLEPDRDRIIEIALV 31


>gi|302519905|ref|ZP_07272247.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
 gi|302428800|gb|EFL00616.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
          Length = 270

 Score = 41.5 bits (95), Expect = 0.097,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN 41
          M + +  R   FD+ET+G+D + DRI+   A  L       
Sbjct: 1  MTQWHLGRLCAFDLETSGVDVEADRIVTAAAYGLGGGEPVE 41


>gi|167462331|ref|ZP_02327420.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 816

 Score = 41.5 bits (95), Expect = 0.097,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 84/219 (38%), Gaps = 7/219 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +    M+  V D E T   S  D II++G V + ++  T+R +   + P G +       
Sbjct: 1   METTGMKFAVLDFE-TTGTSTTDTIIQVGLVIIDEFDITDR-YTSLVNP-GVRIPSSITS 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++ PS   + ++ +   ++     +AH+A FD  F+   L +    P    
Sbjct: 58  LTGITDEMVENAPSVEKVMADLYPLLSD--CVLVAHHASFDHAFLQRSLTKAGYPPFTGR 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +    ++           L  +C  +GI     + H A  D+ + ++++I++M     +
Sbjct: 116 VLDTIDALRVAFPSLGSFQLGHVCSLFGIEH--ENPHQANCDAQVTAELWIRIMQKLFGL 173

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
                    +        +       R          EE
Sbjct: 174 PLLTIQRISQILDPNVSDLGWFINEIRAYKELHTAEDEE 212


>gi|145295978|ref|YP_001138799.1| hypothetical protein cgR_1902 [Corynebacterium glutamicum R]
 gi|57158136|dbj|BAD84105.1| probable oligoribonuclease [Corynebacterium glutamicum]
 gi|140845898|dbj|BAF54897.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 219

 Score = 41.5 bits (95), Expect = 0.097,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 42/123 (34%), Gaps = 4/123 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYS--KTNRTFQV--FLCPNGRKNSPEALKLHG 64
            I  D+ETTGLD+ +  I+E+G +   D       R++     +      ++P    +H 
Sbjct: 7   FIGLDLETTGLDAHSGVILEVGIIIFDDDLMPIAARSWLTNELVEKESIVSAPVVEVMHE 66

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            +  +   K   +    +     +    E  A+        +  +   ++       R+ 
Sbjct: 67  ESGLWEDLKTGHTQPLRQVEAEASAWILEAGANKLPMLGSSVTFDRTWLDHHMPQLHRMF 126

Query: 125 DTL 127
              
Sbjct: 127 HYR 129


>gi|47223800|emb|CAF98570.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 248

 Score = 41.5 bits (95), Expect = 0.097,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          R +  D+E TGLD + D+IIE+  +    D +       + +          +       
Sbjct: 5  RMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIINQPDELLDGMSEWCKEHH 64


>gi|328885949|emb|CCA59188.1| putative DNA polymerase III epsilon subunit [Streptomyces
          venezuelae ATCC 10712]
          Length = 240

 Score = 41.5 bits (95), Expect = 0.098,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53
          FD+ETTG D    RI+    V   D     R       P  R
Sbjct: 11 FDLETTGTDPLEARIVTASIVGFHDGRVV-RQRDWLADPGIR 51


>gi|227495721|ref|ZP_03926032.1| oligoribonuclease [Actinomyces urogenitalis DSM 15434]
 gi|226834741|gb|EEH67124.1| oligoribonuclease [Actinomyces urogenitalis DSM 15434]
          Length = 206

 Score = 41.5 bits (95), Expect = 0.098,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR 53
           D E TGLD   D +IE+  V    +         V + P  +
Sbjct: 10 IDCEMTGLDLGKDALIEVAVVVTDYELKPLGEGIDVLIKPPAQ 52


>gi|220912933|ref|YP_002488242.1| oligoribonuclease [Arthrobacter chlorophenolicus A6]
 gi|219859811|gb|ACL40153.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
          chlorophenolicus A6]
          Length = 208

 Score = 41.5 bits (95), Expect = 0.098,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG 52
          R +  D E TGLD KND +IE+ A V   + +       V + P+ 
Sbjct: 7  RIVWIDCEMTGLDIKNDALIEVAALVTDSELNILGEGVDVVIKPDD 52


>gi|167626987|ref|YP_001677487.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia
          ATCC 25017]
 gi|167596988|gb|ABZ86986.1| oligoribonuclease (3'->5' exoribonuclease) [Francisella
          philomiragia subsp. philomiragia ATCC 25017]
          Length = 178

 Score = 41.5 bits (95), Expect = 0.098,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD  N RIIEI A+
Sbjct: 10 IDLEMTGLDVDNCRIIEIAAI 30


>gi|328472277|gb|EGF43147.1| oligoribonuclease [Vibrio parahaemolyticus 10329]
          Length = 181

 Score = 41.5 bits (95), Expect = 0.099,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD +  +IIEI ++
Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31


>gi|289424061|ref|ZP_06425847.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius
          653-L]
 gi|289155486|gb|EFD04165.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius
          653-L]
          Length = 480

 Score = 41.5 bits (95), Expect = 0.099,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
           + FD+E TG +SK + +IEI A +++D+   +  +   + P  
Sbjct: 22 YVSFDLEATG-NSKFNYMIEISAFKVIDFEVVDE-YSSLIRPPR 63


>gi|254458573|ref|ZP_05071998.1| exonuclease superfamily protein [Campylobacterales bacterium GD 1]
 gi|207084881|gb|EDZ62168.1| exonuclease superfamily protein [Campylobacterales bacterium GD 1]
          Length = 175

 Score = 41.5 bits (95), Expect = 0.099,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 49/174 (28%), Gaps = 14/174 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVF------LCPNGRKNSPEAL 60
           I+ D ET    +    +IE+ A  +    D      +F  +      + P+       + 
Sbjct: 2   IILDFETN--SANIHDVIEVAAFRVEKVNDEYVVKDSFHRYYLSEYEVNPHALAVHKLSP 59

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                       +  F          F +     +AHN  F++  I + L          
Sbjct: 60  DRLERLRAKATYEEHFEDDTEFV--EFCKDAKTLVAHNISFELRHIGSLLSFEKHFCTMK 117

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                T+     +       L   C  Y I       H A+ D     ++  KM
Sbjct: 118 ENK-KTVDARNIRGNIKNPKLIETCAYYNIDFDDEQYHSAIYDVTKTLEILNKM 170


>gi|261867655|ref|YP_003255577.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412987|gb|ACX82358.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 182

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + +RIIEI 
Sbjct: 11 IDLEMTGLDPEKERIIEIA 29


>gi|238749568|ref|ZP_04611073.1| Exodeoxyribonuclease 10 [Yersinia rohdei ATCC 43380]
 gi|238712223|gb|EEQ04436.1| Exodeoxyribonuclease 10 [Yersinia rohdei ATCC 43380]
          Length = 219

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 61/152 (40%), Gaps = 10/152 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET GLD     I+EI +V+++D   +       + P+ R  S +A+ +H IT
Sbjct: 1   MNLRVIDTETCGLD---GGIVEIASVDVVDGVLS-NPMSDLVSPD-RPISLDAMVIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++  P  +    ++       +  ++AHNA FD G +     +          +   
Sbjct: 56  EEMVEGMPRIAVAVRKYQ-----GSPYYVAHNAPFDRGVLPEMGGQWICTLKLARMLYPD 110

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
           +  + +    +     S+ +      +    +
Sbjct: 111 IKHSNQYLRYALRLNVSIPENLYPHRALYDCY 142


>gi|255100457|ref|ZP_05329434.1| putative exonuclease [Clostridium difficile QCD-63q42]
          Length = 1039

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 73/251 (29%), Gaps = 27/251 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIE +GLD  N  I+E+GAV++ D+     T++  +                +    
Sbjct: 12  VFLDIEVSGLDCLNSEILEVGAVKVKDWKI--HTYESLIKNKFEVPIEVFSVCKNLDKND 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+       +     +F  +        + K      +    +     L    +I     
Sbjct: 70  LEIANEIELVEDRLVNFVEDSFIICHDLSLKKKFFEYHMPKLKNKFIDLIELAVILEPYH 129

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT-- 187
                   +N L +   +        +     + + LL             ++F   +  
Sbjct: 130 KDYSLEYLKNTLTNCNSKVENRALSDAIDIINIVNCLLVKFNNYEKTTLEPLSFKINSYL 189

Query: 188 --------------------NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
                                 +    +++  + +    K+ +    +I  EE   +++ 
Sbjct: 190 KKFNLPTWEWSKFLEEANYDLSNNINIKKEYNIFDSKEEKKKERETLKILNEEEKNYEEL 249

Query: 228 IQTLGKNAIWD 238
           ++      IW+
Sbjct: 250 LKY---KTIWE 257


>gi|169634394|ref|YP_001708130.1| oligoribonuclease [Acinetobacter baumannii SDF]
 gi|169797233|ref|YP_001715026.1| oligoribonuclease [Acinetobacter baumannii AYE]
 gi|213155973|ref|YP_002318018.1| oligoribonuclease Orn [Acinetobacter baumannii AB0057]
 gi|215484674|ref|YP_002326909.1| Oligoribonuclease [Acinetobacter baumannii AB307-0294]
 gi|229577105|ref|YP_001083587.2| oligoribonuclease [Acinetobacter baumannii ATCC 17978]
 gi|239500755|ref|ZP_04660065.1| oligoribonuclease [Acinetobacter baumannii AB900]
 gi|293610306|ref|ZP_06692607.1| oligoribonuclease [Acinetobacter sp. SH024]
 gi|301346492|ref|ZP_07227233.1| oligoribonuclease [Acinetobacter baumannii AB056]
 gi|301509982|ref|ZP_07235219.1| oligoribonuclease [Acinetobacter baumannii AB058]
 gi|301594203|ref|ZP_07239211.1| oligoribonuclease [Acinetobacter baumannii AB059]
 gi|332851262|ref|ZP_08433335.1| oligoribonuclease [Acinetobacter baumannii 6013150]
 gi|332866131|ref|ZP_08436846.1| oligoribonuclease [Acinetobacter baumannii 6013113]
 gi|332874063|ref|ZP_08441998.1| oligoribonuclease [Acinetobacter baumannii 6014059]
 gi|169150160|emb|CAM88054.1| oligoribonuclease [Acinetobacter baumannii AYE]
 gi|169153186|emb|CAP02276.1| oligoribonuclease [Acinetobacter baumannii]
 gi|193076335|gb|ABO10985.2| oligoribonuclease [Acinetobacter baumannii ATCC 17978]
 gi|213055133|gb|ACJ40035.1| oligoribonuclease Orn [Acinetobacter baumannii AB0057]
 gi|213985933|gb|ACJ56232.1| Oligoribonuclease [Acinetobacter baumannii AB307-0294]
 gi|292827538|gb|EFF85902.1| oligoribonuclease [Acinetobacter sp. SH024]
 gi|322506755|gb|ADX02209.1| Oligoribonuclease [Acinetobacter baumannii 1656-2]
 gi|323516626|gb|ADX91007.1| oligoribonuclease [Acinetobacter baumannii TCDC-AB0715]
 gi|325124507|gb|ADY84030.1| oligoribonuclease [Acinetobacter calcoaceticus PHEA-2]
 gi|332730142|gb|EGJ61469.1| oligoribonuclease [Acinetobacter baumannii 6013150]
 gi|332734772|gb|EGJ65866.1| oligoribonuclease [Acinetobacter baumannii 6013113]
 gi|332737804|gb|EGJ68696.1| oligoribonuclease [Acinetobacter baumannii 6014059]
          Length = 188

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37
          M      R I  D+E TGLD+ ND+IIEI  +   D+
Sbjct: 1  MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDH 37


>gi|113868667|ref|YP_727156.1| oligoribonuclease [Ralstonia eutropha H16]
 gi|113527443|emb|CAJ93788.1| Oligoribonuclease (3'->5' exoribonuclease) [Ralstonia eutropha
          H16]
          Length = 208

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL    DRIIEI  V
Sbjct: 19 LDMEMTGLQPDTDRIIEIAIV 39


>gi|50554073|ref|XP_504445.1| YALI0E26939p [Yarrowia lipolytica]
 gi|49650314|emb|CAG80046.1| YALI0E26939p [Yarrowia lipolytica]
          Length = 182

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           D E TGLD KND+IIEI  +   D       + ++  +     K    +        + 
Sbjct: 8  IDCEMTGLDHKNDQIIEICCLLTDDNLQVIDPKGYEAVIHCPKEKLDAMSAWCVEHHGQS 67

Query: 70 LKDKPSFSSIFSE 82
             +    S  + 
Sbjct: 68 GLTQKCIESTKTM 80


>gi|223986774|ref|ZP_03636758.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM
           12042]
 gi|223961261|gb|EEF65789.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM
           12042]
          Length = 187

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 48/178 (26%), Gaps = 3/178 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+    D ET   +        +G + + D  +   +    + P+   ++     +    
Sbjct: 1   MKWAAIDFET--ANPSPMSACAVG-LTVFDEGEMVFSDSWLIRPHPYYDAFYPSFIDIHG 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
               +   +                    AHNA FD+  + +       +  D       
Sbjct: 58  ITPDQVADAPFFPKVYEQLKPWLDGGVLCAHNAGFDMKVLASCCSLYRLELPDAPYFCTV 117

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
               +       + LN +C   GI + H           L+    + +M     +   
Sbjct: 118 KLSRKVYPYLKHHRLNDVCDYMGIQLDHHDAGSDARGCALIVANTMNLMQIYEPLELA 175


>gi|301156619|emb|CBW16090.1| oligoribonuclease [Haemophilus parainfluenzae T3T1]
          Length = 182

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          ++ +K   I  D+E TGLD + +RIIEI 
Sbjct: 1  MQLDKQNLIWIDLEMTGLDPEKERIIEIA 29


>gi|309379479|emb|CBX21845.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 187

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ + DRIIE+  +
Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30


>gi|260769996|ref|ZP_05878929.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260615334|gb|EEX40520.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|315182520|gb|ADT89433.1| DNA polymerase III, epsilon subunit [Vibrio furnissii NCTC 11218]
          Length = 238

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 66/172 (38%), Gaps = 12/172 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD ET+G+D+ +D+I+ +G V + LD      + ++F+      +         + +  
Sbjct: 55  AFDFETSGVDAGHDQILSLGWVGMTLDQIDVAASEEIFVR-----HPEFVTADSAVINHI 109

Query: 70  LKDKPSFSSIFSEFWDFFNEQ--NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                +      E  D    Q      + H A  +  F+   ++        P   +DTL
Sbjct: 110 TPQVLAHGVTLDEAMDRLFGQLAGKIALVHGACIERAFVAQYMRERFAIEHFPCVWVDTL 169

Query: 128 SIARRKHPSSRNDLNSLCK----RYGITISHRSKHGALLDSHLLSDVYIKMM 175
            I ++   + + +  +  +    R    +   + H A +D+   ++++   M
Sbjct: 170 QIEKQMTYAGKTECGTSFQLNDVRTRYALPQYNAHSAAIDALATAELFTAQM 221


>gi|71891864|ref|YP_277593.1| oligoribonuclease [Candidatus Blochmannia pennsylvanicus str.
          BPEN]
 gi|71795970|gb|AAZ40721.1| oligoribonuclease [Candidatus Blochmannia pennsylvanicus str.
          BPEN]
          Length = 187

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+ + DRI+EI 
Sbjct: 9  IDLEMTGLNPEWDRILEIA 27


>gi|45185903|ref|NP_983619.1| ACR217Cp [Ashbya gossypii ATCC 10895]
 gi|44981693|gb|AAS51443.1| ACR217Cp [Ashbya gossypii ATCC 10895]
          Length = 225

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 8  RKIV-FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGI 65
          + IV  D E TGLD  +D IIE+  +    +    +  ++  +  +    +         
Sbjct: 31 KPIVWIDCEMTGLDHTSDHIIEVCCLVTDGHLNPVDDGYESVVHASAAALAAMDAWCTQH 90

Query: 66 T 66
           
Sbjct: 91 H 91


>gi|319787041|ref|YP_004146516.1| exonuclease RNase T and DNA polymerase III [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317465553|gb|ADV27285.1| Exonuclease RNase T and DNA polymerase III [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 189

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 1  MIRKNKM-RKIVFDIETTGLDSKNDRIIEIGAV 32
          M   + M R I  D+E TGLD+  D I+EI  V
Sbjct: 1  MAIASGMDRLIWIDLEMTGLDTDRDSILEIATV 33


>gi|163802739|ref|ZP_02196629.1| oligoribonuclease [Vibrio sp. AND4]
 gi|159173446|gb|EDP58268.1| oligoribonuclease [Vibrio sp. AND4]
          Length = 181

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD +  +IIEI ++
Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31


>gi|319951547|ref|ZP_08025351.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4]
 gi|319434795|gb|EFV90111.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4]
          Length = 231

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 3/175 (1%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FD+ETTG D +   ++    +E+       R       P G +    A  +HGIT 
Sbjct: 15  RLLAFDLETTGPDPRTAHVVTSALIEIDG--PHKRERNWLADP-GIEIPEGATDVHGITT 71

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              ++     +           Q          F+  +    L+R +        +ID  
Sbjct: 72  AHAREHGRPHAEVIAETVEAIRQGWRDGRTLVVFNACYDLTILRRWHPTFEVAGPVIDPY 131

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            + R   P  +             +   + H A  D+   + +  KM+    +++
Sbjct: 132 VVDRAVDPFRKGKRTLEALCGQHGVRLDAAHEAAADALAAARLAWKMLGTQQELS 186


>gi|302857491|ref|XP_002959886.1| hypothetical protein VOLCADRAFT_101402 [Volvox carteri f.
           nagariensis]
 gi|300254032|gb|EFJ39050.1| hypothetical protein VOLCADRAFT_101402 [Volvox carteri f.
           nagariensis]
          Length = 114

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 18/23 (78%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL 34
            D+ETTGL  + +RI+E+ AV+L
Sbjct: 90  VDVETTGLQWRTERILELAAVDL 112


>gi|109521548|ref|YP_655977.1| gp136 [Mycobacterium phage Wildcat]
 gi|91981000|gb|ABE67716.1| gp136 [Mycobacterium phage Wildcat]
          Length = 171

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 18/176 (10%)

Query: 7   MR-KIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---SPEAL 60
           MR  IV D+ETT  GL+     I+E+ A        T+R                 P+A+
Sbjct: 1   MRHIIVVDVETTGLGLNPT---ILEVAA----KDLMTDRVLSFIPNVPSSCWAGLDPQAM 53

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQ--NAEWIAHNAKFDVGFINAELQRINKDPL 118
            ++   +          +   + +    +      +   N  FD   +           L
Sbjct: 54  AINRYFERGSWRDMLTPNETRDAYAELRDMLDGNTFAGSNPSFDSKLLARNGAVTWHHRL 113

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +    +     +P     L+ + K  GI      +HGAL D  L +  +  +
Sbjct: 114 --LDLAAYAAGVLDLNPWELPGLDDVAKALGIP-IPEERHGALADVELTAQCFRTL 166


>gi|296101815|ref|YP_003611961.1| exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295056274|gb|ADF61012.1| exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 220

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET  L      I+E+ +V+++D           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   VIDTETCDL---QGGIVEVASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEEVIPHYY-----GSPWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKSRKLSVRTPEGLHHHRALYDCYITAALLIDIMNT 153


>gi|262374958|ref|ZP_06068192.1| oligoribonuclease [Acinetobacter lwoffii SH145]
 gi|262309971|gb|EEY91100.1| oligoribonuclease [Acinetobacter lwoffii SH145]
          Length = 185

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37
          M      R I  D+E TGLD+ ND+IIEI  +   D 
Sbjct: 1  MSSTADTRLIWIDLEMTGLDTDNDQIIEIATIVTDDN 37


>gi|77164204|ref|YP_342729.1| hypothetical protein Noc_0680 [Nitrosococcus oceani ATCC 19707]
 gi|76882518|gb|ABA57199.1| hypothetical protein Noc_0680 [Nitrosococcus oceani ATCC 19707]
          Length = 110

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 9  KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGI 65
           +V D ETTGL  +N    I+ +G   + +   +    F+  L    R+   EA  +HGI
Sbjct: 18 YVVLDTETTGLPEENGLPDIVTLGLTAVKNREISESVEFETRLQ---RRILEEAQSIHGI 74

Query: 66 TDEFLKDKPSFSSIFSEFWDFFNE 89
          T+       SF S + +  D+  +
Sbjct: 75 TNIQTARFESFDSRWHQITDYLKD 98


>gi|302681013|ref|XP_003030188.1| hypothetical protein SCHCODRAFT_57864 [Schizophyllum commune
          H4-8]
 gi|300103879|gb|EFI95285.1| hypothetical protein SCHCODRAFT_57864 [Schizophyllum commune
          H4-8]
          Length = 208

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 10 IV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
          IV  D E TGLD   D+IIEI  +      +       ++
Sbjct: 19 IVWVDCEMTGLDHNKDKIIEIAVLITNGNLEIVDEGVEYI 58


>gi|301063709|ref|ZP_07204220.1| exonuclease [delta proteobacterium NaphS2]
 gi|300442182|gb|EFK06436.1| exonuclease [delta proteobacterium NaphS2]
          Length = 177

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 53/176 (30%), Gaps = 9/176 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
            D+E TGLD ++  I+EI ++       T+    V    P+   + PE+           
Sbjct: 8   IDLEMTGLDPEHHVIVEIASI------VTDDHLSVLAEGPDIVIHQPESTLSAMEPWSLE 61

Query: 71  KDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +       I +  +     +             G        I +D     + + TL 
Sbjct: 62  HHQASGLLDRIKTSVYSTEQAEEETLSFIRQFCQRGHSPLCGNSICQDRRFLVKHMPTLE 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                     + +  L KR+   + H  K    L    + +   +M     QI   
Sbjct: 122 AFFHYRNIDVSSVKELVKRWYPNLPHFEKQKTHLALSDIKESIGEMQYYRKQIFIS 177


>gi|197302182|ref|ZP_03167241.1| hypothetical protein RUMLAC_00908 [Ruminococcus lactaris ATCC
           29176]
 gi|197298613|gb|EDY33154.1| hypothetical protein RUMLAC_00908 [Ruminococcus lactaris ATCC
           29176]
          Length = 231

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 3   RKNKMRKIVFDIETTGLDSKN--------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           R+  M  +V D+E   +              II+IGAV L +  +      +++ P    
Sbjct: 9   RRICMNYLVIDLEMCKVPKDYRNKNYKYASEIIQIGAVLLDERYRRRDEICLYVHPEHGV 68

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97
                  + GI +  +K+ P       E  ++  ++  +  A 
Sbjct: 69  IDNFIANMTGIKNRQIKNAPKLRERLLELTEWIGDREYQVFAW 111


>gi|194336729|ref|YP_002018523.1| Exonuclease RNase T and DNA polymerase III [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309206|gb|ACF43906.1| Exonuclease RNase T and DNA polymerase III [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 190

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 56/189 (29%), Gaps = 22/189 (11%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELL---DYSKTNRTFQVFLCPNGRKN 55
            + FD ETTGL         D     R++++  +      +   +       + P G   
Sbjct: 2   YLFFDTETTGLPRNWRAPVTDVDNWPRLVQLAYLSFDAEGNQLFSGDA---IIKPEGFVI 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA------E 109
              A+++HGI+ +    +        + +          +AHN  FD   + +       
Sbjct: 59  PSSAVQIHGISTQRALLEGKPLGQVLQSFYELVADAEVLVAHNISFDEKIVGSELIRAGM 118

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              +       +    T   A +    ++    S              H A  D    + 
Sbjct: 119 PNSLPSKRKICTMESTTDFCAIKGPYGNKWPKLSELYFQLFGTVFNEAHNAASDIQATAK 178

Query: 170 VYIKMMVGG 178
            + ++   G
Sbjct: 179 CFWELKRRG 187


>gi|56270497|gb|AAH87528.1| LOC496097 protein [Xenopus laevis]
          Length = 223

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          M +    R +  D+E TGLD + D IIE+  +
Sbjct: 38 MAKDMGQRMVWVDLEMTGLDIEKDEIIEMACL 69


>gi|260549063|ref|ZP_05823284.1| oligoribonuclease Orn [Acinetobacter sp. RUH2624]
 gi|260407791|gb|EEX01263.1| oligoribonuclease Orn [Acinetobacter sp. RUH2624]
          Length = 188

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37
          M      R I  D+E TGLD+ ND+IIEI  +   D+
Sbjct: 1  MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDH 37


>gi|284005763|ref|YP_003391582.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
           74]
 gi|283820947|gb|ADB42783.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
           74]
          Length = 193

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 18/185 (9%)

Query: 7   MRKIVFDIETTGLDSKND----------RIIEIGA-VELLDYSKTNRTFQVFLCPNGRKN 55
           M  ++ D ET GL               R+I +   +   +  +  R +   + P+G + 
Sbjct: 1   MTYLIIDTETNGLPQSYHLPVTDLTNWPRLISVAWGLYDEEGKELCRHY-AIVKPDGYRW 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI------NAE 109
           +  A ++H IT E  + K               E+   W+ HN   D G I        +
Sbjct: 60  NKVAQQIHRITPEQAETKGQPLDDVLNQLCPAMERADAWVGHNIDLDYGVIGAEFIRAEQ 119

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            Q           ++ T+ ++ +  P+          +       +  H A  D      
Sbjct: 120 RQPGRVGEFPARPVLCTMDVSAKVTPNREPVRLDELYQLLTGKKMKGMHDASADMLATVR 179

Query: 170 VYIKM 174
            +  +
Sbjct: 180 CFFGL 184


>gi|168010065|ref|XP_001757725.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691001|gb|EDQ77365.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 182

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ 45
          M  +  D+  +GLD + DRI+EI  V      +  RTF+
Sbjct: 1  MPLVWIDLVMSGLDIEKDRILEIACVVTDGRLE--RTFE 37


>gi|119587653|gb|EAW67249.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_a
          [Homo sapiens]
          Length = 179

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|116670981|ref|YP_831914.1| oligoribonuclease [Arthrobacter sp. FB24]
 gi|116611090|gb|ABK03814.1| Exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24]
          Length = 211

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 10/152 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D E TGLD KND +IE+ A V   + +       V + P+    +     +  + 
Sbjct: 7   RIVWIDCEMTGLDIKNDALIEVAALVTDSELNILGDGVDVVIRPDDAALAQMNDFVRDMH 66

Query: 67  ---------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                            + + I      +  +     +  N+        A       + 
Sbjct: 67  TRSGLLDELPHGKTMAEAEAVIMEYIAKWVPDPRKAPLGGNSVGTDRVFLARDMPAVVEH 126

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
           L    I  +      +   +R    +  K  G
Sbjct: 127 LHYRVIDVSTIKELSRRWFARAYFQAPAKHGG 158


>gi|325983556|ref|YP_004295958.1| exonuclease RNase T and DNA polymerase III [Nitrosomonas sp.
          AL212]
 gi|325533075|gb|ADZ27796.1| Exonuclease RNase T and DNA polymerase III [Nitrosomonas sp.
          AL212]
          Length = 181

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          M + N    I  D+E TGL+  NDRIIE+  V
Sbjct: 1  MAQDNN-NLIWVDMEMTGLNPDNDRIIEVALV 31


>gi|255547339|ref|XP_002514727.1| exonuclease, putative [Ricinus communis]
 gi|223546331|gb|EEF47833.1| exonuclease, putative [Ricinus communis]
          Length = 501

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 12/98 (12%)

Query: 11  VFDIETT-----GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCP-NGRKNSPEALKLH 63
            FD+ETT     G   +   I+E GA+ +         ++   + P N    SP +++ +
Sbjct: 14  FFDLETTVPNRPG---QGFAILEFGAILVCSRKLEELHSYSTLVRPANLSLISPTSVRCN 70

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
           GIT + +   P+F+ I    ++  N     W  HN + 
Sbjct: 71  GITHDAVVLAPTFAEIADIVYEILNG--RIWAGHNIQR 106


>gi|218708317|ref|YP_002415938.1| oligoribonuclease [Vibrio splendidus LGP32]
 gi|218321336|emb|CAV17286.1| Oligoribonuclease [Vibrio splendidus LGP32]
          Length = 181

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  +IIEI 
Sbjct: 11 VDLEMTGLDPETHKIIEIA 29


>gi|261400541|ref|ZP_05986666.1| oligoribonuclease [Neisseria lactamica ATCC 23970]
 gi|269209608|gb|EEZ76063.1| oligoribonuclease [Neisseria lactamica ATCC 23970]
          Length = 187

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ + DRIIE+  +
Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30


>gi|255326994|ref|ZP_05368070.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa ATCC 25296]
 gi|255296211|gb|EET75552.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa ATCC 25296]
          Length = 228

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 69/206 (33%), Gaps = 6/206 (2%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFL 70
           FD+ETTG+D    RI+    + L       R  +    P         A+          
Sbjct: 8   FDLETTGVDVTTARIVTASLILLDPQGNVVRRGEWLADPGVEIPAGAAAVHGITTEYARE 67

Query: 71  KDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIIDT 126
             +P+   ++         N      IA NA +D   ++ E+ R N     L P  ++D 
Sbjct: 68  HGRPAREVVWELAGAIGALNLDGVPIIAFNAAYDFSVLHHEMLRHNIANGELPPGVVLDP 127

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-INFGF 185
             + +   P  R             +S  + H +  D+     + +K+     + +N   
Sbjct: 128 YVLHKHVIPRKRGKRTLEVLATEYGVSLENAHTSADDALAAERLLVKLTEQFPEVLNVDA 187

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP 211
           +   ++  +   +   +     R +P
Sbjct: 188 RQLHEQQIQWAAEQAASFQAWLRTQP 213


>gi|241667560|ref|ZP_04755138.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia
          ATCC 25015]
 gi|254876105|ref|ZP_05248815.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia
          ATCC 25015]
 gi|254842126|gb|EET20540.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia
          ATCC 25015]
          Length = 178

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD  N RIIEI A+
Sbjct: 10 IDLEMTGLDVDNCRIIEIAAI 30


>gi|255549210|ref|XP_002515659.1| oligoribonuclease, mitochondrial, putative [Ricinus communis]
 gi|223545202|gb|EEF46711.1| oligoribonuclease, mitochondrial, putative [Ricinus communis]
          Length = 232

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN 41
           +  M  +  D+E TGL+ + DR++EI  + + D + T 
Sbjct: 69  EYNMPLVWIDMEMTGLNIEVDRVLEIACI-ITDGNLTK 105


>gi|188581967|ref|YP_001925412.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
          populi BJ001]
 gi|179345465|gb|ACB80877.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
          populi BJ001]
          Length = 187

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 10/68 (14%)

Query: 12 FDIETTGL--------DSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
          FD+ET+GL        D    R++++G  V   D      ++   + P+G + +PEA ++
Sbjct: 5  FDVETSGLIIRDRPLDDPAQPRMVQLGFTVHTPDRRVV-HSYSALIRPDGWEITPEAQRV 63

Query: 63 HGITDEFL 70
          HG + E  
Sbjct: 64 HGFSTEDC 71


>gi|158253677|gb|AAI54112.1| LOC100127672 protein [Xenopus (Silurana) tropicalis]
          Length = 272

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 9   KIVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKN-SPEALKLHG 64
            +V D E T    +     IIE   ++L     +   TF  ++ P      +P   +L G
Sbjct: 81  FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHTYVQPVVHPQLTPFCTELTG 140

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF 87
           I  + +  +P+ S +     ++ 
Sbjct: 141 IIQDMVDGQPTLSQVLERVDEWM 163


>gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
 gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
          Length = 946

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 4   KNKMRK--IVFDIETTGLDSKNDRIIEIG 30
           +N M++  + FD ETTGL+     ++ I 
Sbjct: 367 QNLMKQTSVCFDTETTGLNPLTAELVGIA 395


>gi|297171091|gb|ADI22103.1| exonuclease I [uncultured Planctomycetales bacterium HF0200_11L05]
          Length = 468

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT---FQVFLCPNGRKNSPEALKLHGI 65
            I  D ETTGLD    +I+++G++   +     +    F   L       SPEA  +H  
Sbjct: 10  YIFTDTETTGLDINFSQILQVGSLLTDENLVVEKEHSLFSKLL--PWIVPSPEAFLVHKK 67

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           T+   +D P+   +  +  +   +     I  N  F     +   + + +      
Sbjct: 68  TECLNEDSPTHYEMMCQLRE---DWLNWSINKNPVFITYNGHRFDEELFRRQFYWC 120


>gi|30248106|ref|NP_840176.1| oligoribonuclease [Nitrosomonas europaea ATCC 19718]
 gi|37999372|sp|Q82Y15|ORN_NITEU RecName: Full=Oligoribonuclease
 gi|30179991|emb|CAD83986.1| Exonuclease [Nitrosomonas europaea ATCC 19718]
          Length = 181

 Score = 41.5 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+   DRIIE+  V
Sbjct: 11 IDMEMTGLNPGTDRIIEVALV 31


>gi|255319398|ref|ZP_05360614.1| oligoribonuclease [Acinetobacter radioresistens SK82]
 gi|262380862|ref|ZP_06074013.1| oligoribonuclease [Acinetobacter radioresistens SH164]
 gi|255303534|gb|EET82735.1| oligoribonuclease [Acinetobacter radioresistens SK82]
 gi|262297497|gb|EEY85415.1| oligoribonuclease [Acinetobacter radioresistens SH164]
          Length = 187

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37
          M      R I  D+E TGLD+ ND+IIEI  +   D+
Sbjct: 1  MSSTPDTRLIWIDLEMTGLDTDNDQIIEIATIITDDH 37


>gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170]
 gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170]
          Length = 944

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 1   MIRKNKMRK--IVFDIETTGLDSKNDRIIEIG 30
           +  +N M++  + FD ETTGL+     ++ I 
Sbjct: 362 LFMQNLMKQNSVCFDTETTGLNPLTAELVGIA 393


>gi|227877226|ref|ZP_03995299.1| DNA polymerase III alpha chain [Lactobacillus crispatus JV-V01]
 gi|256842782|ref|ZP_05548270.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|256848912|ref|ZP_05554346.1| DNA polymerase subunit III alpha [Lactobacillus crispatus MV-1A-US]
 gi|293380675|ref|ZP_06626725.1| exonuclease [Lactobacillus crispatus 214-1]
 gi|312977700|ref|ZP_07789447.1| exonuclease [Lactobacillus crispatus CTV-05]
 gi|227863082|gb|EEJ70528.1| DNA polymerase III alpha chain [Lactobacillus crispatus JV-V01]
 gi|256614202|gb|EEU19403.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|256714451|gb|EEU29438.1| DNA polymerase subunit III alpha [Lactobacillus crispatus MV-1A-US]
 gi|290922772|gb|EFD99724.1| exonuclease [Lactobacillus crispatus 214-1]
 gi|310895439|gb|EFQ44506.1| exonuclease [Lactobacillus crispatus CTV-05]
          Length = 177

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 5/160 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHYPESA--CSLALVMVRNNKIVDR-FYTVINPQ-MPFDARNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K+ P+ + ++    +   +      AHNA+FD   +   L R   +      I   
Sbjct: 57  AEDVKNAPTMAEVWPHIKE-LYQPGMLVAAHNARFDTNVMRQSLARYGIEEPHYLVIDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            S    +     + L+++ +   + + H     +  ++  
Sbjct: 116 ASSKLLEPELPDHKLDTVSEALNVELWHHHNALSDSEACA 155


>gi|256851438|ref|ZP_05556827.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 27-2-CHN]
 gi|260660859|ref|ZP_05861774.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 115-3-CHN]
 gi|282933112|ref|ZP_06338499.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
 gi|297206253|ref|ZP_06923648.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           jensenii JV-V16]
 gi|256616500|gb|EEU21688.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 27-2-CHN]
 gi|260548581|gb|EEX24556.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 115-3-CHN]
 gi|281302616|gb|EFA94831.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
 gi|297149379|gb|EFH29677.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           jensenii JV-V16]
          Length = 177

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 5/160 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANRHPESA--CSLALVMVRNNKIIDR-FYTVINPQ-MPFDGRNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +KD P+  +          +      AHNA+FD   +   L R + D      I   
Sbjct: 57  PDDVKDAPT-MAEVWPKIKALYQPGMLVAAHNARFDANVLKMSLARYDIDEPHYLVIDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            +    +     + LN++ +   + + H     +  ++  
Sbjct: 116 KTSRLFEPDLPNHKLNTVAEALDVELWHHHNALSDSEACA 155


>gi|167035442|ref|YP_001670673.1| exonuclease I [Pseudomonas putida GB-1]
 gi|166861930|gb|ABZ00338.1| Exodeoxyribonuclease I [Pseudomonas putida GB-1]
          Length = 477

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 45/160 (28%), Gaps = 7/160 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETTG++ + DR +++  V    D ++ +    ++  P+           H        
Sbjct: 9   DYETTGINPRCDRPLQVAGVRTDFDLNEIDEPISLYCRPSDDILP------HPAACLVTG 62

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P   +        F  Q    +A       G+                   D  +   
Sbjct: 63  ITPQLLAEQGLCEAEFMTQVYAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAREW 122

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +   S  + ++ +   Y +             + L  ++ 
Sbjct: 123 QGGNSRWDLIDIVRTAYALRPDGIQWPQQDGRTSLRLELL 162


>gi|255576154|ref|XP_002528971.1| exonuclease, putative [Ricinus communis]
 gi|223531561|gb|EEF33390.1| exonuclease, putative [Ricinus communis]
          Length = 194

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 10 IVFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNG 52
          + FD+ETT  +    R  ++E GA+ +         ++   + P  
Sbjct: 16 VFFDLETTVPNRAGGRFWVLEFGAIIVCPRKLVEIESYTTLIRPKD 61


>gi|126326996|ref|XP_001381185.1| PREDICTED: similar to CGI-114 protein [Monodelphis domestica]
          Length = 333

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 1   MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP 57
           M     M  R +  D+E TGLD + D+IIE+  +    D +       + +         
Sbjct: 129 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIINQPDELLDS 188

Query: 58  EALKLHGIT 66
            +       
Sbjct: 189 MSEWCKEHH 197


>gi|226945053|ref|YP_002800126.1| Exonuclease [Azotobacter vinelandii DJ]
 gi|226719980|gb|ACO79151.1| Exonuclease [Azotobacter vinelandii DJ]
          Length = 185

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 49/172 (28%), Gaps = 8/172 (4%)

Query: 8   RKIVFDIE-TT--GLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRK----NSPEA 59
           + +V D+E TT  G     D  IIEIGA  +         F+ F+ P  R        E 
Sbjct: 3   KWLVIDLEATTDEGGWPVADMEIIEIGASLVNRNGHELDHFKRFVRPLRRPLLTLFCQEL 62

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +     +     P     F  +   +  + A W +              +      L 
Sbjct: 63  THIAQSDIDSATPLPMVWEQFEHWLAPYRPRLAGWTSWGDYDRRQLEQEWRRHGLASSLI 122

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           P   ++            R        +         +H AL D+   + + 
Sbjct: 123 PLSHVNLKQRFADTRQLKRPVGLRTALQLAGMSFQGQQHRALEDARNTARLL 174


>gi|156551223|ref|XP_001602293.1| PREDICTED: similar to ENSANGP00000010833 [Nasonia vitripennis]
          Length = 188

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          R +  D+E TGL  ++DRI+E+   +   + +  +  F   L  +  + +          
Sbjct: 9  RIVWIDMEMTGLAVESDRILEVACLITDENLNIVSDEFHQVLHQSDDELARMNEWCQEHH 68


>gi|15677698|ref|NP_274859.1| oligoribonuclease [Neisseria meningitidis MC58]
 gi|11133786|sp|Q9JXW1|ORN_NEIMB RecName: Full=Oligoribonuclease
 gi|7227120|gb|AAF42197.1| oligoribonuclease [Neisseria meningitidis MC58]
 gi|325133508|gb|EGC56171.1| oligoribonuclease [Neisseria meningitidis M13399]
 gi|325200921|gb|ADY96376.1| oligoribonuclease [Neisseria meningitidis H44/76]
 gi|325206775|gb|ADZ02228.1| oligoribonuclease [Neisseria meningitidis M04-240196]
          Length = 187

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ + DRIIE+  +
Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30


>gi|325577877|ref|ZP_08148110.1| oligoribonuclease [Haemophilus parainfluenzae ATCC 33392]
 gi|325160307|gb|EGC72434.1| oligoribonuclease [Haemophilus parainfluenzae ATCC 33392]
          Length = 200

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +++ +K   I  D+E TGLD + +RIIEI 
Sbjct: 18 IMQLDKQNLIWIDLEMTGLDPEKERIIEIA 47


>gi|313206803|ref|YP_004045980.1| DNA polymerase iii, epsilon subunit [Riemerella anatipestifer DSM
           15868]
 gi|312446119|gb|ADQ82474.1| DNA polymerase III, epsilon subunit [Riemerella anatipestifer DSM
           15868]
 gi|315023876|gb|EFT36878.1| DNA polymerase III epsilon subunit [Riemerella anatipestifer RA-YM]
 gi|325335757|gb|ADZ12031.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases
           [Riemerella anatipestifer RA-GD]
          Length = 407

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 7/184 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIE+ G   + + IIE+       +   ++ F   + P     S    KL GIT + +
Sbjct: 4   VIDIESNGGAFREECIIEVAIYRYDGHKIVDQ-FISMVNPE-ADISHFVQKLTGITPKMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K  P F  I     +    + +  + HN  FD   +    +R+       S         
Sbjct: 62  KTAPKFHEIAKRIIE--ITEGSTLVGHNVDFDYRMLRQSFKRLGY---HFSIETLDTIPL 116

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
            +K   +    +       + I     H A  D+    D++  +M             E+
Sbjct: 117 AKKLIPNEESYSLGKLVKSLGIPLAEHHRASSDARATLDLFKLLMTKDKDNEIIQSHFEE 176

Query: 191 RFFK 194
              K
Sbjct: 177 ANAK 180


>gi|313205456|ref|YP_004044113.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter
           propionicigenes WB4]
 gi|312444772|gb|ADQ81128.1| Exonuclease RNase T and DNA polymerase III [Paludibacter
           propionicigenes WB4]
          Length = 189

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 55/187 (29%), Gaps = 16/187 (8%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            + FD ETTGL        +D     R++++  +               + P G     E
Sbjct: 2   YLFFDTETTGLPRDWKAPVSDLNNWPRLVQLAYLFFDSNGNKIAGGDFIIKPEGFTIPTE 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF----INAELQRIN 114
           A ++HGIT E    +          +     +    +AHN  FD               +
Sbjct: 62  ASRIHGITTERANQEGKPIQTVLRDFQSMINEAQYLVAHNMSFDEKIVGAEFLRNNMPDS 121

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGALLDSHLLSDVYI 172
             P      + + +     +         L + +           H A  D H  +  + 
Sbjct: 122 IAPKRKICTMQSTTNFCAINGPYGYKWPKLSELHYKLFKTDFEEAHNAAADIHATARCFW 181

Query: 173 KMMVGGS 179
           ++   G 
Sbjct: 182 ELRRLGK 188


>gi|149192489|ref|ZP_01870676.1| oligoribonuclease [Vibrio shilonii AK1]
 gi|148833680|gb|EDL50730.1| oligoribonuclease [Vibrio shilonii AK1]
          Length = 181

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD +  +IIEI ++
Sbjct: 11 VDLEMTGLDPEQHKIIEIASI 31


>gi|254442129|ref|ZP_05055605.1| exonuclease superfamily [Verrucomicrobiae bacterium DG1235]
 gi|198256437|gb|EDY80745.1| exonuclease superfamily [Verrucomicrobiae bacterium DG1235]
          Length = 193

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK 39
           D+E TGLD   DRI+E  AV + +   
Sbjct: 9  IDLEMTGLDPATDRIVE-AAVIITNKQL 35


>gi|306819268|ref|ZP_07452979.1| oligoribonuclease [Mobiluncus mulieris ATCC 35239]
 gi|304648050|gb|EFM45364.1| oligoribonuclease [Mobiluncus mulieris ATCC 35239]
          Length = 208

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50
           D E TGLD   D +IEIG +    D +  +    + + P
Sbjct: 15 VDCEMTGLDLATDELIEIGVIVTDFDLNPLDTGIDLLIKP 54


>gi|260361286|ref|ZP_05774394.1| oligoribonuclease [Vibrio parahaemolyticus K5030]
 gi|308114248|gb|EFO51788.1| oligoribonuclease [Vibrio parahaemolyticus K5030]
          Length = 148

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD +  +IIEI ++
Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31


>gi|225025590|ref|ZP_03714782.1| hypothetical protein EIKCOROL_02492 [Eikenella corrodens ATCC
          23834]
 gi|224941628|gb|EEG22837.1| hypothetical protein EIKCOROL_02492 [Eikenella corrodens ATCC
          23834]
          Length = 238

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLD 36
           D+E TGL+ ++DRIIE  AV + D
Sbjct: 57 LDMEMTGLNPEHDRIIE-AAVVITD 80


>gi|149409288|ref|XP_001508438.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 683

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 43/159 (27%), Gaps = 10/159 (6%)

Query: 10  IVFDIETT----GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK----NSPEAL 60
           IV D E+T    G    +  IIE  AV L     +    FQ ++ P           E  
Sbjct: 39  IVIDFESTCWNDGKHHYSQEIIEFPAVLLNTSTGEIESEFQCYVQPQEHPILSEFCIELT 98

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +     +         S F ++     ++     A                +     D 
Sbjct: 99  GIKQAQVDEGVPLKICLSQFCKWIQMIQQKKKIIFAPGISNPATSEVKSCAFVTWSDWDL 158

Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
              ++      + + P   N    L   Y +    + K 
Sbjct: 159 GVCLEYECKRKQLRKPEILNSWIDLRATYKLFYMRKPKG 197


>gi|121634222|ref|YP_974467.1| oligoribonuclease [Neisseria meningitidis FAM18]
 gi|166216273|sp|A1KS35|ORN_NEIMF RecName: Full=Oligoribonuclease
 gi|120865928|emb|CAM09665.1| putative oligoribonuclease [Neisseria meningitidis FAM18]
 gi|261393203|emb|CAX50822.1| oligoribonuclease [Neisseria meningitidis 8013]
 gi|325131506|gb|EGC54213.1| oligoribonuclease [Neisseria meningitidis M6190]
 gi|325137552|gb|EGC60134.1| oligoribonuclease [Neisseria meningitidis ES14902]
 gi|325141599|gb|EGC64064.1| oligoribonuclease [Neisseria meningitidis 961-5945]
 gi|325197638|gb|ADY93094.1| oligoribonuclease [Neisseria meningitidis G2136]
          Length = 187

 Score = 41.5 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ + DRIIE+  +
Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30


>gi|325127521|gb|EGC50447.1| oligoribonuclease [Neisseria meningitidis N1568]
 gi|325129519|gb|EGC52346.1| oligoribonuclease [Neisseria meningitidis OX99.30304]
 gi|325201497|gb|ADY96951.1| oligoribonuclease [Neisseria meningitidis M01-240149]
 gi|325207477|gb|ADZ02929.1| oligoribonuclease [Neisseria meningitidis NZ-05/33]
          Length = 187

 Score = 41.1 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ + DRIIE+  +
Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30


>gi|315634034|ref|ZP_07889323.1| oligoribonuclease [Aggregatibacter segnis ATCC 33393]
 gi|315477284|gb|EFU68027.1| oligoribonuclease [Aggregatibacter segnis ATCC 33393]
          Length = 182

 Score = 41.1 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + +RIIEI 
Sbjct: 11 IDLEMTGLDPEKERIIEIA 29


>gi|330444995|ref|ZP_08308649.1| oligoribonuclease monomer [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328493113|dbj|GAA03146.1| oligoribonuclease monomer [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 181

 Score = 41.1 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  +IIEI 
Sbjct: 11 IDLEMTGLDPETHKIIEIA 29


>gi|257069110|ref|YP_003155365.1| N-acyl-D-glucosamine 2-epimerase [Brachybacterium faecium DSM
          4810]
 gi|256559928|gb|ACU85775.1| N-acyl-D-glucosamine 2-epimerase [Brachybacterium faecium DSM
          4810]
          Length = 634

 Score = 41.1 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51
          R I  D E TGLD + D ++EI  +    D +       V + P 
Sbjct: 12 RIIWVDCEMTGLDKQRDALVEIAVLVTDADLNILGDGVDVVIKPP 56


>gi|148227894|ref|NP_001089039.1| ERI1 exoribonuclease 2 [Xenopus laevis]
 gi|82179168|sp|Q5HZL1|ERI2_XENLA RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease
           domain-containing protein 1
 gi|57032602|gb|AAH88972.1| Exod1 protein [Xenopus laevis]
          Length = 687

 Score = 41.1 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 62/228 (27%), Gaps = 30/228 (13%)

Query: 10  IVFDIETT----GLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           I+ D E+T    G       IIE  AV L +   +    F  ++ P      S    +L 
Sbjct: 39  IIIDFESTCWKDG-KHSTQEIIEFPAVLLNVSNGEIESEFHTYVQPQEHPILSDFCTELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI  + + D        S+F  +  +   E              AE +           +
Sbjct: 98  GINQQQVDDGVPLKICLSQFNSWIQKLQKEKGIAFVTAVPTHSTAEHKMCAFVTWSDWDL 157

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK-----MMVGG 178
              L    R+                  +       + +D      ++       +    
Sbjct: 158 GVCLLYECRR----------------KQMKKPDILNSWIDLRATYKLFYNRRPKGLNGAL 201

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE-ELDEHD 225
             +   F   E     + + T    S +  D     +ITK  +   H 
Sbjct: 202 QDLGIEFSGREHSGLDDSRNTAKLASRMICDGC-VMKITKSLDKVNHK 248


>gi|283457705|ref|YP_003362291.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa DY-18]
 gi|283133706|dbj|BAI64471.1| DNA polymerase III, epsilon subunit [Rothia mucilaginosa DY-18]
          Length = 231

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 69/206 (33%), Gaps = 6/206 (2%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFL 70
           FD+ETTG+D    RI+    + L       R  +    P         A+          
Sbjct: 11  FDLETTGVDVTTARIVTASLILLDPQGNVVRRGEWLADPGVEIPAGAAAVHGITTEYARE 70

Query: 71  KDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIIDT 126
             +P+   ++         N      IA NA +D   ++ E+ R N     L P  ++D 
Sbjct: 71  HGRPAREVVWELAGAIGALNLDGVPIIAFNAAYDFSVLHHEMLRHNIANGELPPGVVLDP 130

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-INFGF 185
             + +   P  R             +S  + H +  D+     + +K+     + +N   
Sbjct: 131 YVLHKHVIPRKRGKRTLEVLAAEYGVSLENAHTSADDALAAERLLVKLTEQFPEVLNVDA 190

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP 211
           +   ++  +   +   +     R +P
Sbjct: 191 RQLHEQQIQWAAEQAASFQAWLRTQP 216


>gi|71736737|ref|YP_274026.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557290|gb|AAZ36501.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320323478|gb|EFW79563.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329479|gb|EFW85471.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 180

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 5/113 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E TT   G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPVLTHFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            I    +      ++++ +F  + +   A  +   +  D      E +     
Sbjct: 64  HINQSSIDSAAPLTTVWPQFERWLSHHRARVLGWASWGDYDRQQLEEEWRYHR 116


>gi|84386967|ref|ZP_00989991.1| oligoribonuclease [Vibrio splendidus 12B01]
 gi|84378257|gb|EAP95116.1| oligoribonuclease [Vibrio splendidus 12B01]
          Length = 181

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  +IIEI 
Sbjct: 11 VDLEMTGLDPETHKIIEIA 29


>gi|237797629|ref|ZP_04586090.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020479|gb|EGI00536.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 180

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 5/113 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E TT   G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPVRRPLLTHFCRQLT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            I+   +      ++++ +F  + +   A  +   +  D      E +  +  
Sbjct: 64  HISQSNIDSAAPLTTVWPQFERWLSHHRARVLGWASWGDYDRQQLEEEWRHHQ 116


>gi|154488091|ref|ZP_02029208.1| hypothetical protein BIFADO_01662 [Bifidobacterium adolescentis
          L2-32]
 gi|154083564|gb|EDN82609.1| hypothetical protein BIFADO_01662 [Bifidobacterium adolescentis
          L2-32]
          Length = 212

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51
           D ETTG+   N +++EIG +    D  + +  F   + P+
Sbjct: 29 IDTETTGISRTNAKLLEIGMIVTNLDGIEEHDRFICPVRPD 69


>gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49]
 gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49]
          Length = 949

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 1   MIRKNKMRK--IVFDIETTGLDSKNDRIIEIG 30
           +  +N M++  + FD ETTGL+     ++ I 
Sbjct: 367 LFIQNLMKQPSVCFDTETTGLNPLTAELVGIA 398


>gi|72161306|ref|YP_288963.1| DNA polymerase III subunit epsilon [Thermobifida fusca YX]
 gi|71915038|gb|AAZ54940.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX]
          Length = 210

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 3/146 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D ET   +     +  +G V + D    +R +   + P    +  E   +        
Sbjct: 7   AIDFET--ANRNQGSVCAVGLVRVTDGRIVDR-YTTLVRPPAPVDHFEQDNIAVHGITPE 63

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
               + +              + ++AHNA FD+G I A                      
Sbjct: 64  HVADAPAWPQVHTTILEFAAGSPFVAHNAVFDMGVIRAACAHAGLPEPSLHYACSLDIAR 123

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS 156
           R       + L ++C+  G  +    
Sbjct: 124 RTWPALRNHRLPTVCRTIGYDLRRHH 149


>gi|89075319|ref|ZP_01161741.1| oligoribonuclease [Photobacterium sp. SKA34]
 gi|90581256|ref|ZP_01237053.1| oligoribonuclease [Vibrio angustum S14]
 gi|89048868|gb|EAR54437.1| oligoribonuclease [Photobacterium sp. SKA34]
 gi|90437495|gb|EAS62689.1| oligoribonuclease [Vibrio angustum S14]
          Length = 181

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  +IIEI 
Sbjct: 11 IDLEMTGLDPETHKIIEIA 29


>gi|330973293|gb|EGH73359.1| exonuclease [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 180

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E TT   G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            I    +      ++++ +F  + +   A  +   +  D      E +  +  
Sbjct: 64  HINQSSIDSAAPLTTVWPQFERWLSHHRARIVGWASWGDYDRQQLEEEWRHHH 116


>gi|302185096|ref|ZP_07261769.1| exonuclease [Pseudomonas syringae pv. syringae 642]
          Length = 180

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E TT   G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            I    +      ++++ +F  + +   A  +   +  D      E +  +  
Sbjct: 64  HINQSSIDSAAPLTTVWPQFERWLSHHRARIVGWASWGDYDRQQLEEEWRHHH 116


>gi|288800983|ref|ZP_06406439.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331917|gb|EFC70399.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
          Length = 208

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 63/198 (31%), Gaps = 35/198 (17%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSP 57
            + FD ETTG+         D     R+++I   +   +           + P G +   
Sbjct: 16  YLFFDTETTGIPNDYNAPSEDTNNWPRLVQIAWLITRENGDIYKELQSRIISPEGFRIPQ 75

Query: 58  EALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            ++ +HGIT E   +       + ++F +  +  +   + HN  FD+  +         +
Sbjct: 76  SSINIHGITQEKAVEDGEDLCDVLNDFVNDVDYNDVILVGHNIYFDIHVVT-------AE 128

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK----------------HGA 160
            +    I +  ++ +     +       CK  G+      K                H A
Sbjct: 129 LIRNDMIDEKETLEKINKICTMKKSTDFCKISGLYGYKYPKLQQLYYKLFGENFDNAHDA 188

Query: 161 LLDSHLLSDVYIKMMVGG 178
             D       + ++   G
Sbjct: 189 GSDIEATRKCFFELKRRG 206


>gi|294658997|ref|XP_461325.2| DEHA2F22594p [Debaryomyces hansenii CBS767]
 gi|202953536|emb|CAG89730.2| DEHA2F22594p [Debaryomyces hansenii]
          Length = 295

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 27/122 (22%), Gaps = 5/122 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            D E TGL+   D IIEI  +           + F+  +                   + 
Sbjct: 93  IDCEMTGLNVFQDHIIEICCIITDGNLEIIDEKGFESTVYQPKEVLDGMNEWCVNQHGKS 152

Query: 70  LKDKPSFSSIFS---EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                   +      +  D   E   +++  N     G      +               
Sbjct: 153 GLTAKILENPQCELSKIEDELLEYIKQYVQPNKGIMAGNSIHMDKFFMMREFPKIIDYLH 212

Query: 127 LS 128
             
Sbjct: 213 YR 214


>gi|32455548|ref|NP_862304.1| Ycg4D [Corynebacterium glutamicum]
 gi|9836715|gb|AAG00279.1|AF164956_11 Ycg4D [Corynebacterium glutamicum]
          Length = 296

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 52/187 (27%), Gaps = 9/187 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETTGL     ++IEI   +          F   + P        A ++HGI+ + L
Sbjct: 116 VLDTETTGLGYD-AQVIEIAIADASGKVL----FDTRIKPTVAIE-AAAQEVHGISPDAL 169

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK---FDVGFINAELQRINKDPLDPSRIIDTL 127
            + PS+  + +      + +       +              L+            +   
Sbjct: 170 INAPSWPEVANRIEALLSGRTVIIFNASFDSRLIAQTAGAFGLETGWWSTCTTRCAMHLA 229

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           + A        +   +            + H A  D+    ++   +      ++     
Sbjct: 230 ASAYGSTNPYGSISLADATSAAGVPWTGAAHSAAADTLATVELVKSIARVKPALDLELSK 289

Query: 188 NEDRFFK 194
             +    
Sbjct: 290 LLEEKAG 296


>gi|251792379|ref|YP_003007105.1| oligoribonuclease [Aggregatibacter aphrophilus NJ8700]
 gi|247533772|gb|ACS97018.1| oligoribonuclease [Aggregatibacter aphrophilus NJ8700]
          Length = 181

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + +RIIEI 
Sbjct: 11 IDLEMTGLDPEKERIIEIA 29


>gi|330837024|ref|YP_004411665.1| Exodeoxyribonuclease I [Spirochaeta coccoides DSM 17374]
 gi|329748927|gb|AEC02283.1| Exodeoxyribonuclease I [Spirochaeta coccoides DSM 17374]
          Length = 474

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALK 61
          D+ET GL+   DRI++   V    D +   +   ++  P           
Sbjct: 11 DLETFGLNPYYDRIVQFAGVRTDMDLTPVGQPILLYARPTIDYLPDPLAC 60


>gi|325204819|gb|ADZ00273.1| oligoribonuclease [Neisseria meningitidis M01-240355]
          Length = 187

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ + DRIIE+  +
Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30


>gi|295692577|ref|YP_003601187.1| DNA polymerase iii, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus crispatus ST1]
 gi|295030683|emb|CBL50162.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus crispatus ST1]
          Length = 177

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 5/160 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHYPESA--CSLALVMVRNNKIVDR-FYTVINPQ-MPFDARNIQIHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K+ P+ + ++    +   +      AHNA+FD   +   L R   +      I   
Sbjct: 57  AEDVKNAPTMAEVWPHIKE-LYQPGMLVAAHNARFDTNVMRQSLARYGIEEPHYLVIDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            S    +     + L+++ +   + + H     +  ++  
Sbjct: 116 ASSKLLEPELPDHKLDTVSEALNVELWHHHNALSDSEACA 155


>gi|311279254|ref|YP_003941485.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae
           SCF1]
 gi|308748449|gb|ADO48201.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae
           SCF1]
          Length = 219

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 17/162 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET  L      ++EI +V+++D   T       + P+ R  SP+A+ +H IT+E +
Sbjct: 4   VIDTETCDL---QGGVVEIASVDIVDGKIT-NPMSHLIRPD-RPISPQAMAIHRITEEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +         + +A ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEEVV-----PLYQGSAWYVAHNASFDRRVLPEMNGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 S   L    K    T      H AL D ++ + + I
Sbjct: 107 WPGIKYSNMALYKSRKLSVATPPGLHHHRALYDCYITAALLI 148


>gi|32491178|ref|NP_871432.1| oligoribonuclease [Wigglesworthia glossinidia endosymbiont of
          Glossina brevipalpis]
 gi|81844446|sp|Q8D2C5|ORN_WIGBR RecName: Full=Oligoribonuclease
 gi|25166385|dbj|BAC24575.1| yjeR [Wigglesworthia glossinidia endosymbiont of Glossina
          brevipalpis]
          Length = 186

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 5  NKMRKIVFDIETTGLDSKNDRIIEIG------AVELLDYSKTNRTFQV 46
          NK   I  D+E TGL+ +NDRIIEI        V++L    +   FQ 
Sbjct: 8  NKKNLIWIDLEMTGLNLENDRIIEIATVITDKYVKILAEGPSIAIFQS 55


>gi|295425904|ref|ZP_06818582.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064402|gb|EFG55332.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           amylolyticus DSM 11664]
          Length = 177

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 7/167 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHYPESA--CSLALVMVRNNEIVDR-FYTVINPQ-MPFDARNIEVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + ++D P+  +          +      AHNA+FD   +   L R +        I   
Sbjct: 57  ADDVRDAPT-MAEVWPKIKDLYQPGMLVAAHNARFDTNVMRQSLARYSISEPHYLVIDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +    +     + L+++ +   + + H   H AL DS   +++ I 
Sbjct: 116 ATSKLLEPDLPDHKLDTVSEALNVNLWH--HHNALSDSEACAEILIN 160


>gi|197334850|ref|YP_002157125.1| oligoribonuclease [Vibrio fischeri MJ11]
 gi|197316340|gb|ACH65787.1| oligoribonuclease [Vibrio fischeri MJ11]
          Length = 181

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD +  +IIEI ++
Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31


>gi|301787585|ref|XP_002929208.1| PREDICTED: 3'-5' exoribonuclease 1-like [Ailuropoda melanoleuca]
          Length = 349

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T   G   +    IIE   V L  ++ +   TFQ ++ P      S   + L G
Sbjct: 132 IIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINLTG 191

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +  +  D+                  + +    +       +    
Sbjct: 192 ITQDQVDRADTFPQVLKQVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCRLSRLKYP 251

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++M+
Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAVRML 310

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 311 QDGCELRIN 319


>gi|223042138|ref|ZP_03612309.1| oligoribonuclease [Actinobacillus minor 202]
 gi|240947963|ref|ZP_04752389.1| oligoribonuclease [Actinobacillus minor NM305]
 gi|223017077|gb|EEF15518.1| oligoribonuclease [Actinobacillus minor 202]
 gi|240297719|gb|EER48180.1| oligoribonuclease [Actinobacillus minor NM305]
          Length = 181

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + ++K   I  D+E TGLD + +RIIEI 
Sbjct: 1  MSQDKQNLIWIDLEMTGLDPEKERIIEIA 29


>gi|59712936|ref|YP_205712.1| oligoribonuclease [Vibrio fischeri ES114]
 gi|81310874|sp|Q5E2C2|ORN_VIBF1 RecName: Full=Oligoribonuclease
 gi|59481037|gb|AAW86824.1| oligoribonuclease [Vibrio fischeri ES114]
          Length = 181

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD +  +IIEI ++
Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31


>gi|300798138|ref|NP_001178043.1| ERI1 exoribonuclease 2 [Rattus norvegicus]
          Length = 687

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 51/177 (28%), Gaps = 6/177 (3%)

Query: 10  IVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE  AV L     +    F  ++ P      S    +L 
Sbjct: 38  IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI    + +        S+F  + ++   +     A  D      E++           +
Sbjct: 98  GIKQVQVDEGVPLKICLSQFCKWIHKLQQQKKISFATGDSEPSTPEVKPCAFVTWSDWDL 157

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              L    ++    +    +       T            S  L +V I+       
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYNRKPKGLSGALQEVGIEFSGREHS 214


>gi|209696189|ref|YP_002264119.1| oligoribonuclease [Aliivibrio salmonicida LFI1238]
 gi|208010142|emb|CAQ80467.1| oligoribonuclease [Aliivibrio salmonicida LFI1238]
          Length = 181

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD +  +IIEI ++
Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31


>gi|149914802|ref|ZP_01903332.1| Exodeoxyribonuclease I [Roseobacter sp. AzwK-3b]
 gi|149811595|gb|EDM71430.1| Exodeoxyribonuclease I [Roseobacter sp. AzwK-3b]
          Length = 459

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 53/224 (23%), Gaps = 14/224 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  + +D+ETTG+  + D+ ++  A+   +         +               +    
Sbjct: 1   MDFVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDRVNIRCRLAPHILPSPQALVVTRV 60

Query: 67  DEFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                  P+  S+F          +            + F    L++     L P+    
Sbjct: 61  SPDQLTDPNLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQNLSPNIYAT 120

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             +   R                      R     +  +        K+           
Sbjct: 121 QFNGNTRFDILPAVY----------AAYARQPDLFVWPTDDTGRRSFKLDRLAPANGINA 170

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
               D     E        +  R   L++ +     + H   +Q
Sbjct: 171 HNAHDALGDVEATIHIARLIATRSPALWSELID---NAHKARVQ 211


>gi|289626405|ref|ZP_06459359.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289649559|ref|ZP_06480902.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298486356|ref|ZP_07004418.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298159084|gb|EFI00143.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330866329|gb|EGH01038.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330889890|gb|EGH22551.1| exonuclease [Pseudomonas syringae pv. mori str. 301020]
          Length = 180

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 5/113 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E TT   G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPVLTHFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            I    +      ++++ +F  + +   A  +   +  D      E +     
Sbjct: 64  HINQSSIDSAAPLTAVWPQFERWLSHHRARVLGWASWGDYDRQQLEEEWRYHR 116


>gi|226952875|ref|ZP_03823339.1| oligoribonuclease [Acinetobacter sp. ATCC 27244]
 gi|226836386|gb|EEH68769.1| oligoribonuclease [Acinetobacter sp. ATCC 27244]
          Length = 186

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37
          M      R I  D+E TGLD+ ND+IIEI  +   D 
Sbjct: 1  MSSTPDTRLIWIDLEMTGLDTDNDKIIEIATIITDDN 37


>gi|312882822|ref|ZP_07742555.1| oligoribonuclease [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369514|gb|EFP97033.1| oligoribonuclease [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 181

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  +IIEI 
Sbjct: 11 IDLEMTGLDPEEHKIIEIA 29


>gi|262374198|ref|ZP_06067474.1| oligoribonuclease [Acinetobacter junii SH205]
 gi|262310756|gb|EEY91844.1| oligoribonuclease [Acinetobacter junii SH205]
          Length = 184

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37
          M      R I  D+E TGLD+ ND+IIEI  +   D 
Sbjct: 1  MSSTPDTRLIWIDLEMTGLDTDNDKIIEIATIITDDN 37


>gi|170590708|ref|XP_001900113.1| exonuclease family protein [Brugia malayi]
 gi|158592263|gb|EDP30863.1| exonuclease family protein [Brugia malayi]
          Length = 399

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 56/218 (25%), Gaps = 19/218 (8%)

Query: 11  VFDIETTG---LDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHGI 65
           V D E T    L   N  IIE  AV +     +    F  ++ P      S       GI
Sbjct: 148 VIDFECTCEADLYDYNHEIIEFPAVLVDVRKKEIVDVFHSYVRPLANPQLSEFCSAFTGI 207

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E +     F            +    W+  +         A +     D     ++  
Sbjct: 208 TQEMIDKALPFID--------VLDSFRTWMQLHRLGQNDMRYAFVTDGPWDIAKFFQMQC 259

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             S         R  +N             S     L   L    ++ M   G + +   
Sbjct: 260 IQSKLNTVPHDFRFYINIRRSFANKYCKKYSMQKINLGGMLT---FLNMKFEGREHS--- 313

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
             ++ +        +       R      RI + E  +
Sbjct: 314 GLDDSKNIARIVIKMLEDRSELRVNEKLVRIKESEKAK 351


>gi|319639353|ref|ZP_07994104.1| oligoribonuclease [Neisseria mucosa C102]
 gi|317399537|gb|EFV80207.1| oligoribonuclease [Neisseria mucosa C102]
          Length = 185

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ ++DRIIE+  +
Sbjct: 11 LDMEMTGLNPEHDRIIEVAMI 31


>gi|291390710|ref|XP_002711856.1| PREDICTED: exoribonuclease 2 [Oryctolagus cuniculus]
          Length = 689

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 41/159 (25%), Gaps = 10/159 (6%)

Query: 10  IVFDIETT----GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK----NSPEAL 60
           IV D E+T    G    N  IIE  AV L     +    F  ++ P           E  
Sbjct: 38  IVIDFESTCWNDGKHHHNQEIIEFPAVLLNTSTGEIESEFHTYVQPQEHPILSEFCMELT 97

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +     +         S F ++     +Q     +                +     D 
Sbjct: 98  GIKQAQVDEGVPLKICLSQFCKWIHKIQQQKKIVFSTGVSEPSSSEVQPCTFVTWSDWDL 157

Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
              ++      +   P   N    L   Y +    + K 
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKG 196


>gi|28869227|ref|NP_791846.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213967497|ref|ZP_03395645.1| exonuclease [Pseudomonas syringae pv. tomato T1]
 gi|301386461|ref|ZP_07234879.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13]
 gi|302059344|ref|ZP_07250885.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40]
 gi|302131217|ref|ZP_07257207.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28852468|gb|AAO55541.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213927798|gb|EEB61345.1| exonuclease [Pseudomonas syringae pv. tomato T1]
 gi|331016942|gb|EGH96998.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 180

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E TT   G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCKELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            I+   +      ++++ +F  + +   A  +   +  D      E +     
Sbjct: 64  HISQSNIDSAAPLTTVWPQFERWLSHHRARVVGWASWGDYDRQQLEEEWRRHQ 116


>gi|152978666|ref|YP_001344295.1| oligoribonuclease [Actinobacillus succinogenes 130Z]
 gi|171704275|sp|A6VN13|ORN_ACTSZ RecName: Full=Oligoribonuclease
 gi|150840389|gb|ABR74360.1| Exonuclease RNase T and DNA polymerase III [Actinobacillus
          succinogenes 130Z]
          Length = 182

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + +RIIEI 
Sbjct: 11 IDLEMTGLDPEQERIIEIA 29


>gi|328774277|gb|EGF84314.1| hypothetical protein BATDEDRAFT_9096 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 188

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 36/146 (24%), Gaps = 11/146 (7%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+E TGLD + D IIEI  +    + +     + + L                   E  
Sbjct: 13  IDLEMTGLDLERDVIIEIACIITDGNLNAVQERYDLVLHQPKSVMDQMNDWCIQTHGESG 72

Query: 71  KDKPSFSSI----------FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
             K    S                    +Q    +A N+         +   +  D L  
Sbjct: 73  LTKQVIESTLTLKDAEATILDFVKRHIPKQREGVLAGNSVHVDRQFLHKHMPLLIDHLHY 132

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCK 146
             +  +                +  K
Sbjct: 133 RIVDVSSIKEIGMRWYPDFYKKAPKK 158


>gi|322514990|ref|ZP_08068002.1| oligoribonuclease [Actinobacillus ureae ATCC 25976]
 gi|322119043|gb|EFX91207.1| oligoribonuclease [Actinobacillus ureae ATCC 25976]
          Length = 183

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M + +    I  D+E TGLD + +RIIEI 
Sbjct: 1  MSKLDSQNLIWIDLEMTGLDPEKERIIEIA 30


>gi|291409160|ref|XP_002720873.1| PREDICTED: histone mRNA 3 end-specific exonuclease-like
           [Oryctolagus cuniculus]
          Length = 344

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T   G   +    IIE   V L  ++ +   TFQ ++ P      S   + L G
Sbjct: 127 IIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEANTQLSDFCINLTG 186

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +  +  D+                  + +    +       +    
Sbjct: 187 ITQDQVDKADTFPQVLRKVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCQLSRLKYP 246

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++M+
Sbjct: 247 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAVRML 305

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 306 QDGCELRIN 314


>gi|257484494|ref|ZP_05638535.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|330986187|gb|EGH84290.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331013242|gb|EGH93298.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 180

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 5/113 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E TT   G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPVLTHFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            I    +      ++++ +F  + +   A  +   +  D      E +     
Sbjct: 64  HINQSSIDSAAPLTTVWPQFERWLSHHRARVLGWASWGDYDRQQLEEEWRYHR 116


>gi|126699035|ref|YP_001087932.1| putative exonuclease [Clostridium difficile 630]
 gi|115250472|emb|CAJ68296.1| putative helicase, DinG family [Clostridium difficile]
          Length = 1039

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 73/251 (29%), Gaps = 27/251 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIE +GLD  N  I+E+GAV++ D+     T++  +                +    
Sbjct: 12  VFLDIEVSGLDCLNSEILEVGAVKVKDWKIY--TYESLIKNKFEVPVEVFSVCKNLDKND 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+       +     +F  +        + K      +    +     L    +I     
Sbjct: 70  LEIANEIELVEDRLVNFVEDSFIICHDLSLKKKFFEYHMPKLKNKFIDLIELAVILEPYH 129

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT-- 187
                   +N L +   +        +     + + LL             ++F   +  
Sbjct: 130 KDYSLEYLKNTLTNCNSKVENRALSDAIDIINIVNCLLVKFNNYEKTTLEPLSFKINSYL 189

Query: 188 --------------------NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
                                 +    +++  + +    K+ +    +I  EE   +++ 
Sbjct: 190 KKFNLPTWEWSKFLEEANYDLSNNINIKKEYNIFDSKEEKKKERETLKILNEEEKNYEEL 249

Query: 228 IQTLGKNAIWD 238
           ++      IW+
Sbjct: 250 LKY---KTIWE 257


>gi|256637237|dbj|BAI03206.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640289|dbj|BAI06251.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643346|dbj|BAI09301.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646401|dbj|BAI12349.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649454|dbj|BAI15395.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256655498|dbj|BAI21425.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 337

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 18/179 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRKNSPEALKLHG 64
             D+ETTGL S  D+I+ I  + L           T ++   ++    +K+ P A  +HG
Sbjct: 129 FVDVETTGLHSD-DQIVSICMILLYADKSQELQKLTYKSLY-YIFDPCKKSHPIAEGIHG 186

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
             D  L+ +  F         F  E++   +AHN  FD+ FI              +  I
Sbjct: 187 YNDWTLRHQNLFEEKMEHILSFI-EESDVIVAHNVNFDMKFIRNSFA---------NAKI 236

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           D   I             S C +        S H A  D  +   +Y++ M   + ++ 
Sbjct: 237 DIGKIGTMCTMEMHGGSLSACSKRLGIQRKTSIHDAAEDVLMCMCLYLEKMSNINVLDM 295


>gi|258543099|ref|YP_003188532.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634177|dbj|BAI00153.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256652440|dbj|BAI18374.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-01-42C]
          Length = 343

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 18/179 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRKNSPEALKLHG 64
             D+ETTGL S  D+I+ I  + L           T ++   ++    +K+ P A  +HG
Sbjct: 135 FVDVETTGLHSD-DQIVSICMILLYADKSQELQKLTYKSLY-YIFDPCKKSHPIAEGIHG 192

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
             D  L+ +  F         F  E++   +AHN  FD+ FI              +  I
Sbjct: 193 YNDWTLRHQNLFEEKMEHILSFI-EESDVIVAHNVNFDMKFIRNSFA---------NAKI 242

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           D   I             S C +        S H A  D  +   +Y++ M   + ++ 
Sbjct: 243 DIGKIGTMCTMEMHGGSLSACSKRLGIQRKTSIHDAAEDVLMCMCLYLEKMSNINVLDM 301


>gi|119187187|ref|XP_001244200.1| hypothetical protein CIMG_03641 [Coccidioides immitis RS]
          Length = 137

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 2/57 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD + D I++I                F V +       S  +       
Sbjct: 13 IDCEMTGLDPETDHILQISCFLTDADLNLLEPEGFHVTVHQPQYILSSMSSWCVSTH 69


>gi|26325030|dbj|BAC26269.1| unnamed protein product [Mus musculus]
          Length = 688

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 53/177 (29%), Gaps = 6/177 (3%)

Query: 10  IVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE  AV L     +    F  ++ P      S    +L 
Sbjct: 38  IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI    + +        S+F  + ++   +     A  D     +E++           +
Sbjct: 98  GIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTWSDWDL 157

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              L    R+    +    +       T     K      S  L +V I+       
Sbjct: 158 GVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQEVGIEFSGREHS 214


>gi|74141341|dbj|BAE35962.1| unnamed protein product [Mus musculus]
          Length = 636

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 53/177 (29%), Gaps = 6/177 (3%)

Query: 10  IVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE  AV L     +    F  ++ P      S    +L 
Sbjct: 38  IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI    + +        S+F  + ++   +     A  D     +E++           +
Sbjct: 98  GIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTWSDWDL 157

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              L    R+    +    +       T     K      S  L +V I+       
Sbjct: 158 GVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQEVGIEFSGREHS 214


>gi|61098180|ref|NP_081974.3| ERI1 exoribonuclease 2 [Mus musculus]
 gi|81888440|sp|Q5BKS4|ERI2_MOUSE RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease
           domain-containing protein 1
 gi|60688299|gb|AAH90961.1| Exonuclease domain containing 1 [Mus musculus]
 gi|74138480|dbj|BAE38055.1| unnamed protein product [Mus musculus]
 gi|74189274|dbj|BAE22676.1| unnamed protein product [Mus musculus]
          Length = 688

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 53/177 (29%), Gaps = 6/177 (3%)

Query: 10  IVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE  AV L     +    F  ++ P      S    +L 
Sbjct: 38  IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI    + +        S+F  + ++   +     A  D     +E++           +
Sbjct: 98  GIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTWSDWDL 157

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              L    R+    +    +       T     K      S  L +V I+       
Sbjct: 158 GVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQEVGIEFSGREHS 214


>gi|238897699|ref|YP_002923378.1| oligoribonuclease [Candidatus Hamiltonella defensa 5AT
          (Acyrthosiphon pisum)]
 gi|229465456|gb|ACQ67230.1| oligoribonuclease [Candidatus Hamiltonella defensa 5AT
          (Acyrthosiphon pisum)]
          Length = 185

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + D IIEI 
Sbjct: 15 IDLEMTGLDPERDSIIEIA 33


>gi|145641023|ref|ZP_01796604.1| oligoribonuclease [Haemophilus influenzae R3021]
 gi|145274184|gb|EDK14049.1| oligoribonuclease [Haemophilus influenzae 22.4-21]
          Length = 115

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + +RIIEI 
Sbjct: 11 IDLEMTGLDPEKERIIEIA 29


>gi|260913837|ref|ZP_05920311.1| oligoribonuclease [Pasteurella dagmatis ATCC 43325]
 gi|260631924|gb|EEX50101.1| oligoribonuclease [Pasteurella dagmatis ATCC 43325]
          Length = 184

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + +RIIEI 
Sbjct: 11 IDLEMTGLDPEKERIIEIA 29


>gi|237809227|ref|YP_002893667.1| Exonuclease RNase T and DNA polymerase III [Tolumonas auensis DSM
          9187]
 gi|237501488|gb|ACQ94081.1| Exonuclease RNase T and DNA polymerase III [Tolumonas auensis DSM
          9187]
          Length = 181

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          + +N+   I  D+E TGL+ + DRI+EI  +
Sbjct: 1  MSQNEQNLIWLDMEMTGLEPETDRILEIAMI 31


>gi|172040411|ref|YP_001800125.1| DNA polymerase III subunit epsilon [Corynebacterium urealyticum
          DSM 7109]
 gi|171851715|emb|CAQ04691.1| DNA polymerase III, epsilon subunit [Corynebacterium urealyticum
          DSM 7109]
          Length = 237

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN 41
          FD+ETTG +  + RI+    V +      +
Sbjct: 28 FDLETTGTNPLSARIVTSAMVRIRGSQVED 57


>gi|304388401|ref|ZP_07370510.1| oligoribonuclease [Neisseria meningitidis ATCC 13091]
 gi|304337613|gb|EFM03773.1| oligoribonuclease [Neisseria meningitidis ATCC 13091]
          Length = 187

 Score = 41.1 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ + DRIIE+  +
Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30


>gi|90018234|gb|ABD83930.1| hypothetical protein [Ictalurus punctatus]
          Length = 216

 Score = 41.1 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 6/115 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTGL++    I+++ A+         R+F V++ P    +   +          
Sbjct: 35  VFXDLETTGLNTSECDIVQLSAI------SGERSFNVYILPRCPIDHGASRVTGLTIHSR 88

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                          +      +     +    VG       R     +     +
Sbjct: 89  KLLLHGQPMQTVPLREALTSFISFLKTFSRPVLVGHNCKRFDRPILLRIMTEFNL 143


>gi|294649278|ref|ZP_06726713.1| exoribonuclease II [Acinetobacter haemolyticus ATCC 19194]
 gi|292824831|gb|EFF83599.1| exoribonuclease II [Acinetobacter haemolyticus ATCC 19194]
          Length = 186

 Score = 41.1 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37
          M      R I  D+E TGLD+ ND+IIEI  +   D 
Sbjct: 1  MSSTPDTRLIWIDLEMTGLDTDNDKIIEIATIITDDN 37


>gi|269467908|gb|EEZ79647.1| DNA polymerase III, epsilon subunit [uncultured SUP05 cluster
           bacterium]
          Length = 196

 Score = 41.1 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 59/185 (31%), Gaps = 14/185 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIET G + K D ++EI A+ + +D         +    + P  G    P ALK +G
Sbjct: 13  VVVDIETGGFNDKTDAMLEICAIIIGIDDKGVYYPKDSRHFHIEPFKGANLDPSALKFNG 72

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                                  A  + HNA FD+GF+ A   R    
Sbjct: 73  IDVNNPFRMAVSEKEALGEIFKTARAEMKEEECTRAILVGHNAFFDLGFLYAASNRSKLK 132

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                            +        ++ +   I       H AL D+   ++++ K+  
Sbjct: 133 NPFHQFSTIDTVSLSALYYGETVLAKAM-RVANIEWDDAKAHSALYDTKKTAELFCKIFN 191

Query: 177 GGSQI 181
                
Sbjct: 192 AQDYT 196


>gi|332519119|ref|ZP_08395586.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4]
 gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4]
          Length = 953

 Score = 41.1 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 1   MIRKNKMRK--IVFDIETTGLDSKNDRIIEIG 30
           +  KN M +  + FD ETTGL+     ++ I 
Sbjct: 371 LFIKNLMNQTSVCFDTETTGLNPLTAELVGIA 402


>gi|289679622|ref|ZP_06500512.1| exonuclease [Pseudomonas syringae pv. syringae FF5]
 gi|330897689|gb|EGH29108.1| exonuclease [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330981951|gb|EGH80054.1| exonuclease [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 180

 Score = 41.1 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E TT   G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            I    +      ++++ +F  + +   A  +   +  D      E +  +  
Sbjct: 64  HINQSSIDSAAPLTTVWPQFERWLSHHRARIVGWASWGDYDRQQLEEEWRHHH 116


>gi|303317210|ref|XP_003068607.1| exonuclease family protein [Coccidioides posadasii C735 delta
          SOWgp]
 gi|240108288|gb|EER26462.1| exonuclease family protein [Coccidioides posadasii C735 delta
          SOWgp]
 gi|320038531|gb|EFW20466.1| RNA exonuclease Rex2 [Coccidioides posadasii str. Silveira]
          Length = 190

 Score = 41.1 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 2/59 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           D E TGLD + D I++I                F V +       S  +         
Sbjct: 13 IDCEMTGLDPETDHILQISCFLTDADLNLLEPEGFHVTVHQPQYILSSMSSWCVSTHGH 71


>gi|213618879|ref|ZP_03372705.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 178

 Score = 41.1 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL   +  I+EI  ++   +          + P  +    EA+ +HGIT+E
Sbjct: 20  YLFIDTETTGLG-DDAEIVEICIIDSHGFIM----LNTLIKP-TKPIPDEAIAIHGITNE 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
            +   P+++ I     + F         
Sbjct: 74  MVAFAPAWTDICGAVEELFRRFGFVIYN 101


>gi|66045076|ref|YP_234917.1| exonuclease [Pseudomonas syringae pv. syringae B728a]
 gi|63255783|gb|AAY36879.1| Exonuclease [Pseudomonas syringae pv. syringae B728a]
          Length = 181

 Score = 41.1 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E TT   G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 5   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCRELT 64

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            I    +      ++++ +F  + +   A  +   +  D      E +  +  
Sbjct: 65  HINQSSIDSAAPLTTVWPQFERWLSHHRARIVGWASWGDYDRQQLEEEWRHHH 117


>gi|218767556|ref|YP_002342068.1| oligoribonuclease [Neisseria meningitidis Z2491]
 gi|11133783|sp|Q9JW09|ORN_NEIMA RecName: Full=Oligoribonuclease
 gi|121051564|emb|CAM07862.1| putative oligoribonuclease [Neisseria meningitidis Z2491]
 gi|319409820|emb|CBY90128.1| oligoribonuclease [Neisseria meningitidis WUE 2594]
          Length = 187

 Score = 41.1 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ + DRIIE+  +
Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30


>gi|326331153|ref|ZP_08197449.1| oligoribonuclease [Nocardioidaceae bacterium Broad-1]
 gi|325951048|gb|EGD43092.1| oligoribonuclease [Nocardioidaceae bacterium Broad-1]
          Length = 222

 Score = 41.1 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPN 51
          R +  D E TGL  +ND +IE+ A V   D +       + + P 
Sbjct: 11 RLVWIDCEMTGLSLENDALIEVAALVTDFDLNVLGDGVDIIIKPP 55


>gi|313669085|ref|YP_004049369.1| oligoribonuclease [Neisseria lactamica ST-640]
 gi|313006547|emb|CBN88011.1| putative oligoribonuclease [Neisseria lactamica 020-06]
          Length = 187

 Score = 41.1 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ + DRIIE+  +
Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30


>gi|237640346|ref|YP_002891201.1| exonuclease family protein [Escherichia coli]
 gi|229561565|gb|ACQ77768.1| exonuclease family protein [Escherichia coli]
          Length = 289

 Score = 41.1 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 61/188 (32%), Gaps = 9/188 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETTGL  + D++IE+   ++             L P   +  P+A+ +HGIT+  L
Sbjct: 108 VLDTETTGLG-ERDQVIELAVTDIRGAVL----LCTRLRP-TVEIDPQAMGVHGITETEL 161

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNA---KFDVGFINAELQRINKDPLDPSRIIDTL 127
            ++P+++ +        + ++      +               Q       +    +   
Sbjct: 162 SNEPTWTQVAPALARLLSGRHLVIFNPSFDSRMLRQTASAFGDQLSWWQEQNCLCAMKLA 221

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           + A            +              H A  D+   +D+  ++      +    + 
Sbjct: 222 ADAFGSTNRHGTISLADATCEAGVSWKGRAHSAATDAIATADLVTEIAKVQRDLVVQLQE 281

Query: 188 NEDRFFKE 195
            + +   E
Sbjct: 282 LQSKGNLE 289


>gi|161869352|ref|YP_001598519.1| oligoribonuclease [Neisseria meningitidis 053442]
 gi|161594905|gb|ABX72565.1| oligoribonuclease [Neisseria meningitidis 053442]
 gi|325135642|gb|EGC58259.1| oligoribonuclease [Neisseria meningitidis M0579]
          Length = 187

 Score = 41.1 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ + DRIIE+  +
Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30


>gi|95930297|ref|ZP_01313034.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
 gi|95133549|gb|EAT15211.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
          Length = 193

 Score = 41.1 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 8/172 (4%)

Query: 7   MRKIVF---DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           MR+  F   D+ETTGLD   D II   AV++     T + ++ ++ P      PE+++ H
Sbjct: 1   MREAAFCIVDLETTGLDLTTDTIINAAAVKIKKGRIT-KIYETYVKPPT-SIPPESIQFH 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD+ L DKPS   +  EF  F  +       H+  FD+  ++  L+      L+ +  
Sbjct: 59  GITDDMLVDKPSIGEVLPEFMTFIGDSM--ITGHHINFDLKMLDRHLRENYDCNLEGAPW 116

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DT+ + +    ++ +            I    +H AL DS   + V+++++
Sbjct: 117 LDTMLLHKLVMENNTSTQLDDLLNV-YCIDCEQRHRALGDSIATAKVFLRIL 167


>gi|213586760|ref|ZP_03368586.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 192

 Score = 41.1 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 54/175 (30%), Gaps = 10/175 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL   +  I+EI  ++   +          + P  +    EA+ +HGIT+E
Sbjct: 26  YLFIDTETTGLG-DDAEIVEICIIDSHGFIM----LNTLIKP-TKPIPDEAIAIHGITNE 79

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+++ I     + F         +NA FD+  I        +       ++    
Sbjct: 80  MVAFAPAWTDICGAVEELFRRFGFV--IYNADFDLRLIRQTYALNERPSEGAPWMLAA-- 135

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            +               +  G          A     +    +  +      +  
Sbjct: 136 HSVCAMKLYAEYRGEPGRFNGYKWHKLVDAAAHEGVVVEGKAHRALADCKMTLGL 190


>gi|149041576|gb|EDL95417.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_a
          [Rattus norvegicus]
          Length = 254

 Score = 41.1 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|296314314|ref|ZP_06864255.1| oligoribonuclease [Neisseria polysaccharea ATCC 43768]
 gi|296838975|gb|EFH22913.1| oligoribonuclease [Neisseria polysaccharea ATCC 43768]
          Length = 187

 Score = 41.1 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ + DRIIE+  +
Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30


>gi|198282567|ref|YP_002218888.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667091|ref|YP_002424758.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247088|gb|ACH82681.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519304|gb|ACK79890.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 201

 Score = 41.1 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 7/46 (15%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP 50
          +V D+ET G DS+ + ++E+ A+ +    +  +     T    + P
Sbjct: 14 VVVDVETAGFDSERNALLEVAAIII--GGEVGQLRPVATHHFQVQP 57


>gi|241686335|ref|XP_002411687.1| exonuclease, putative [Ixodes scapularis]
 gi|215504479|gb|EEC13973.1| exonuclease, putative [Ixodes scapularis]
          Length = 337

 Score = 41.1 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 55/195 (28%), Gaps = 18/195 (9%)

Query: 9   KIVFDIETTG----LDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
            +V D E T            IIE   +++     +   TF  ++ P   R+ S    +L
Sbjct: 106 FLVLDFEATCSREKPPPHPQEIIEFPVLKVNGRSFQVESTFHQYVQPRVHRELSSFCTEL 165

Query: 63  HGITDEFLKDKPSF-----SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            GI  + + ++P F             +       + +A     D         + +   
Sbjct: 166 TGIIQDMVDEQPFFEEVLEKFHQWMCSEGLLGPPEKRVAFVTFGDWDLQKMLPSQCSYFK 225

Query: 118 LDPSRIIDTLSIARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +     + +    ++         P +  +    C+   +   H       +    +  V
Sbjct: 226 IPVPEYLTSWINLKKAFVEATGHWPKTLPETLEYCRLEQVGRHHSGIGSHDMPEVCILRV 285

Query: 171 YIKMMVGGSQINFGF 185
            +         +  F
Sbjct: 286 DLDYPHEQHDSHVDF 300


>gi|213965916|ref|ZP_03394107.1| oligoribonuclease [Corynebacterium amycolatum SK46]
 gi|213951494|gb|EEB62885.1| oligoribonuclease [Corynebacterium amycolatum SK46]
          Length = 217

 Score = 41.1 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D E TGL+ +   I+EI A+
Sbjct: 16 RIVWIDCEMTGLEPERHVIVEIAAL 40


>gi|281345321|gb|EFB20905.1| hypothetical protein PANDA_019321 [Ailuropoda melanoleuca]
          Length = 311

 Score = 41.1 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T   G   +    IIE   V L  ++ +   TFQ ++ P      S   + L G
Sbjct: 94  IIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINLTG 153

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +  +  D+                  + +    +       +    
Sbjct: 154 ITQDQVDRADTFPQVLKQVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCRLSRLKYP 213

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++M+
Sbjct: 214 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAVRML 272

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 273 QDGCELRIN 281


>gi|227832010|ref|YP_002833717.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262184134|ref|ZP_06043555.1| DNA polymerase III subunit epsilon [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453026|gb|ACP31779.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 516

 Score = 41.1 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 19/52 (36%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            +   I+TTG+     R++ + A+ L    +  + F   + P          
Sbjct: 74  FVALTIQTTGIHPSTGRLLTVDALTLNAEGEIGQEFHAVINPGEDPGPKHLH 125


>gi|194290291|ref|YP_002006198.1| oligoribonuclease [Cupriavidus taiwanensis LMG 19424]
 gi|193224126|emb|CAQ70135.1| oligoribonuclease [Cupriavidus taiwanensis LMG 19424]
          Length = 211

 Score = 41.1 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL    DRIIE+  V
Sbjct: 19 LDMEMTGLQPDTDRIIEVAVV 39


>gi|59800509|ref|YP_207221.1| oligoribonuclease [Neisseria gonorrhoeae FA 1090]
 gi|194097641|ref|YP_002000679.1| oligoribonuclease [Neisseria gonorrhoeae NCCP11945]
 gi|239998172|ref|ZP_04718096.1| oligoribonuclease [Neisseria gonorrhoeae 35/02]
 gi|240013354|ref|ZP_04720267.1| oligoribonuclease [Neisseria gonorrhoeae DGI18]
 gi|240015799|ref|ZP_04722339.1| oligoribonuclease [Neisseria gonorrhoeae FA6140]
 gi|240079936|ref|ZP_04724479.1| oligoribonuclease [Neisseria gonorrhoeae FA19]
 gi|240112143|ref|ZP_04726633.1| oligoribonuclease [Neisseria gonorrhoeae MS11]
 gi|240114889|ref|ZP_04728951.1| oligoribonuclease [Neisseria gonorrhoeae PID18]
 gi|240117093|ref|ZP_04731155.1| oligoribonuclease [Neisseria gonorrhoeae PID1]
 gi|240120427|ref|ZP_04733389.1| oligoribonuclease [Neisseria gonorrhoeae PID24-1]
 gi|240122729|ref|ZP_04735685.1| oligoribonuclease [Neisseria gonorrhoeae PID332]
 gi|240124920|ref|ZP_04737806.1| oligoribonuclease [Neisseria gonorrhoeae SK-92-679]
 gi|240127431|ref|ZP_04740092.1| oligoribonuclease [Neisseria gonorrhoeae SK-93-1035]
 gi|254492949|ref|ZP_05106120.1| oligoribonuclease [Neisseria gonorrhoeae 1291]
 gi|260441295|ref|ZP_05795111.1| oligoribonuclease [Neisseria gonorrhoeae DGI2]
 gi|268594024|ref|ZP_06128191.1| oligoribonuclease [Neisseria gonorrhoeae 35/02]
 gi|268596076|ref|ZP_06130243.1| oligoribonuclease [Neisseria gonorrhoeae FA19]
 gi|268598201|ref|ZP_06132368.1| oligoribonuclease [Neisseria gonorrhoeae MS11]
 gi|268600546|ref|ZP_06134713.1| oligoribonuclease [Neisseria gonorrhoeae PID18]
 gi|268602779|ref|ZP_06136946.1| oligoribonuclease [Neisseria gonorrhoeae PID1]
 gi|268681328|ref|ZP_06148190.1| oligoribonuclease [Neisseria gonorrhoeae PID332]
 gi|268683499|ref|ZP_06150361.1| oligoribonuclease [Neisseria gonorrhoeae SK-92-679]
 gi|268685805|ref|ZP_06152667.1| oligoribonuclease [Neisseria gonorrhoeae SK-93-1035]
 gi|291044651|ref|ZP_06570360.1| oligoribonuclease [Neisseria gonorrhoeae DGI2]
 gi|293397760|ref|ZP_06641966.1| oligoribonuclease [Neisseria gonorrhoeae F62]
 gi|81311266|sp|Q5FAH8|ORN_NEIG1 RecName: Full=Oligoribonuclease
 gi|59717404|gb|AAW88809.1| putative oligo ribonuclease [Neisseria gonorrhoeae FA 1090]
 gi|193932931|gb|ACF28755.1| oligoribonuclease [Neisseria gonorrhoeae NCCP11945]
 gi|226511989|gb|EEH61334.1| oligoribonuclease [Neisseria gonorrhoeae 1291]
 gi|268547413|gb|EEZ42831.1| oligoribonuclease [Neisseria gonorrhoeae 35/02]
 gi|268549864|gb|EEZ44883.1| oligoribonuclease [Neisseria gonorrhoeae FA19]
 gi|268582332|gb|EEZ47008.1| oligoribonuclease [Neisseria gonorrhoeae MS11]
 gi|268584677|gb|EEZ49353.1| oligoribonuclease [Neisseria gonorrhoeae PID18]
 gi|268586910|gb|EEZ51586.1| oligoribonuclease [Neisseria gonorrhoeae PID1]
 gi|268621612|gb|EEZ54012.1| oligoribonuclease [Neisseria gonorrhoeae PID332]
 gi|268623783|gb|EEZ56183.1| oligoribonuclease [Neisseria gonorrhoeae SK-92-679]
 gi|268626089|gb|EEZ58489.1| oligoribonuclease [Neisseria gonorrhoeae SK-93-1035]
 gi|291011545|gb|EFE03541.1| oligoribonuclease [Neisseria gonorrhoeae DGI2]
 gi|291611706|gb|EFF40775.1| oligoribonuclease [Neisseria gonorrhoeae F62]
 gi|317163462|gb|ADV07003.1| oligoribonuclease [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 187

 Score = 41.1 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ + DRIIE+  +
Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30


>gi|330954430|gb|EGH54690.1| exonuclease [Pseudomonas syringae Cit 7]
          Length = 180

 Score = 41.1 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 52/175 (29%), Gaps = 8/175 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR----KNSPEAL 60
            +V D+E TT   G       +IEIGA  +    +    F+ F+ P  R        E  
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCRELT 63

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            ++  + +      +    F  +      +   W +              Q      L  
Sbjct: 64  HINQSSIDSAAPLTTVWPQFERWLSHHRARIVGWASWGDYDRQQLEEEWRQHHLDSALSS 123

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              ++      +     +    +   +         +H AL+D+   + +   ++
Sbjct: 124 MPHVNLKQRFAQARHLQKPMGLNSALQLAGMQFSGQQHRALVDARNTARLLPLIL 178


>gi|293392189|ref|ZP_06636523.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952723|gb|EFE02842.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 182

 Score = 41.1 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + +RIIEI 
Sbjct: 11 IDLEMTGLDPEKERIIEIA 29


>gi|229366424|gb|ACQ58192.1| Oligoribonuclease, mitochondrial precursor [Anoplopoma fimbria]
          Length = 266

 Score = 41.1 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 2  IRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          +    M  R +  D+E TGLD + D+IIE+  +
Sbjct: 65 MSSIAMSQRMVWVDLEMTGLDIEKDQIIEMACI 97


>gi|325068103|ref|ZP_08126776.1| Exonuclease RNase T and DNA polymerase III [Actinomyces oris K20]
          Length = 260

 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
          FD ETTG+D   DR++    V
Sbjct: 28 FDTETTGVDPSGDRLVTAALV 48


>gi|320533707|ref|ZP_08034325.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134075|gb|EFW26405.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 264

 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
          FD ETTG+D   DR++    V
Sbjct: 32 FDTETTGVDPSGDRLVTAALV 52


>gi|326774035|ref|ZP_08233317.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
 gi|326636174|gb|EGE37078.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
          Length = 259

 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
          FD ETTG+D   DR++    V
Sbjct: 27 FDTETTGVDPSGDRLVTAALV 47


>gi|269955883|ref|YP_003325672.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
          cellulosilytica DSM 15894]
 gi|269304564|gb|ACZ30114.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 212

 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D E TGLD++ D +IE+ AV
Sbjct: 9  RIVWIDCEMTGLDARADALIEVAAV 33


>gi|71908614|ref|YP_286201.1| oligoribonuclease [Dechloromonas aromatica RCB]
 gi|71848235|gb|AAZ47731.1| Exonuclease [Dechloromonas aromatica RCB]
          Length = 184

 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+   DRIIE+  V
Sbjct: 11 LDMEMTGLNPDGDRIIEMAMV 31


>gi|85706653|ref|ZP_01037745.1| probable DNA polymerase III (epsilon chain) protein [Roseovarius
          sp. 217]
 gi|85668711|gb|EAQ23580.1| probable DNA polymerase III (epsilon chain) protein [Roseovarius
          sp. 217]
          Length = 193

 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 2/65 (3%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+E  G       IIE+G VE+     T R       P        +       ++  
Sbjct: 6  AVDVEGNGATP--PEIIELGIVEMDGLRLTGRIKHWQFRPELEITPIVSRIHGITNEDVA 63

Query: 71 KDKPS 75
             P 
Sbjct: 64 DAPPF 68


>gi|127511493|ref|YP_001092690.1| oligoribonuclease [Shewanella loihica PV-4]
 gi|166216587|sp|A3QAD3|ORN_SHELP RecName: Full=Oligoribonuclease
 gi|126636788|gb|ABO22431.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica
          PV-4]
          Length = 181

 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+ + DRIIEI 
Sbjct: 11 VDLEMTGLEPEVDRIIEIA 29


>gi|258624141|ref|ZP_05719091.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258583572|gb|EEW08371.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 289

 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETTGL  + D++IE+   ++             L P      P+A+ +HGIT+  L
Sbjct: 108 VLDTETTGLG-ERDQVIELAVTDIRGEVL----LCTRLRP-TVGIDPQAMGVHGITEAEL 161

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            ++P+++ +        + ++   +  N+ FD   +                     ++
Sbjct: 162 SNEPTWTQVAPALARLLSGRH--LVIFNSSFDSRMLRQTASAFGDQLSWWQEQNCLCAM 218


>gi|297156433|gb|ADI06145.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           bingchenggensis BCW-1]
          Length = 188

 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 55/173 (31%), Gaps = 11/173 (6%)

Query: 1   MIRKNKMRKIVFDIETT---GLDSKN--DRIIEIGAVELL---DYSKTNRTFQVFLCPNG 52
           M R    R +V D+E T   G   +     IIEIG  EL          R+    + P  
Sbjct: 1   MARLRLDRILVVDVEATCWDGPAPEGMESEIIEIGLCELDVATGERPVRRSLM--VRPEH 58

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
              SP   +L  IT E       F+       D     +  W +   ++D      +   
Sbjct: 59  STVSPFCTELTTITPEQAAAGIGFAEACEILRDEHGAGHRVWASW-GEYDRAQFTRQSSA 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            N      +R ++  ++    H   R    +    +       + H  + D+ 
Sbjct: 118 TNIRYPFGTRHLNVKNLYSLMHSLDRELGMAGALSHAGLSLEGTHHRGVDDAW 170


>gi|238603146|ref|XP_002395870.1| hypothetical protein MPER_03997 [Moniliophthora perniciosa FA553]
 gi|215467348|gb|EEB96800.1| hypothetical protein MPER_03997 [Moniliophthora perniciosa FA553]
          Length = 151

 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD + D+I+EI AV + +      +   +  +  + ++            
Sbjct: 18 IDCEMTGLDPETDKIMEI-AVLITNGNLELVDEGIEYIVKLDRKQLDRMGEWCTKQH 73


>gi|45271975|gb|AAS57208.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45271978|gb|AAS57210.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45271981|gb|AAS57212.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45271984|gb|AAS57214.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45271987|gb|AAS57216.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45271990|gb|AAS57218.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45271993|gb|AAS57220.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45271996|gb|AAS57222.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45271999|gb|AAS57224.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272002|gb|AAS57226.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272005|gb|AAS57228.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272008|gb|AAS57230.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272011|gb|AAS57232.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272014|gb|AAS57234.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272017|gb|AAS57236.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272020|gb|AAS57238.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272023|gb|AAS57240.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272026|gb|AAS57242.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272029|gb|AAS57244.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272032|gb|AAS57246.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272035|gb|AAS57248.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272038|gb|AAS57250.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272041|gb|AAS57252.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272044|gb|AAS57254.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272047|gb|AAS57256.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272050|gb|AAS57258.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272053|gb|AAS57260.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272056|gb|AAS57262.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272059|gb|AAS57264.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272062|gb|AAS57266.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272065|gb|AAS57268.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272068|gb|AAS57270.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272071|gb|AAS57272.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272074|gb|AAS57274.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272077|gb|AAS57276.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272080|gb|AAS57278.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272083|gb|AAS57280.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272086|gb|AAS57282.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272089|gb|AAS57284.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|45272092|gb|AAS57286.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
 gi|50898188|gb|AAT86047.1| DNA polymerase III epsilon subunit [Coxiella burnetii]
          Length = 16

 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 7  MRKIVFDIETTGLDSK 22
          MR+IV D ETTGL  +
Sbjct: 1  MRQIVLDTETTGLVPE 16


>gi|88855197|ref|ZP_01129862.1| oligoribonuclease [marine actinobacterium PHSC20C1]
 gi|88815725|gb|EAR25582.1| oligoribonuclease [marine actinobacterium PHSC20C1]
          Length = 206

 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50
           D E TGLD + D ++E+  V    D    +    + + P
Sbjct: 11 IDCEMTGLDVEIDELVEVAVVITDYDLVPVDEGMSIVIKP 50


>gi|114332250|ref|YP_748472.1| oligoribonuclease [Nitrosomonas eutropha C91]
 gi|122313081|sp|Q0ADS5|ORN_NITEC RecName: Full=Oligoribonuclease
 gi|114309264|gb|ABI60507.1| Exonuclease, RNase T and DNA polymerase III [Nitrosomonas
          eutropha C91]
          Length = 181

 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+   D IIEI  V
Sbjct: 11 IDMEMTGLNPNTDCIIEIALV 31


>gi|58337027|ref|YP_193612.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227903590|ref|ZP_04021395.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
 gi|58254344|gb|AAV42581.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227868477|gb|EEJ75898.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
          Length = 177

 Score = 40.7 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 5/160 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHYPESA--CSLALVMVRNNKIVDR-FYTVINPQ-MPFDARNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K+ P+  +          +      AHN++FD   +   L R N +      I   
Sbjct: 57  AEDVKNAPT-MAEVWPKIKGLYQPGMLVAAHNSRFDTNVMRQSLARYNIEEPHYLVIDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            +    +     + L+++     + + H     +  ++  
Sbjct: 116 ATSKLFEPELPNHKLDTVSDALNVELWHHHNALSDSEACA 155


>gi|56478391|ref|YP_159980.1| oligoribonuclease [Aromatoleum aromaticum EbN1]
 gi|81821041|sp|Q5P0T5|ORN_AZOSE RecName: Full=Oligoribonuclease
 gi|56314434|emb|CAI09079.1| oligoribonuclease [Aromatoleum aromaticum EbN1]
          Length = 183

 Score = 40.7 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL   +DRIIEI  V
Sbjct: 11 LDMEMTGLQPDSDRIIEIAIV 31


>gi|297690289|ref|XP_002822552.1| PREDICTED: oligoribonuclease, mitochondrial-like isoform 1 [Pongo
          abelii]
 gi|332208258|ref|XP_003253217.1| PREDICTED: oligoribonuclease, mitochondrial-like [Nomascus
          leucogenys]
          Length = 237

 Score = 40.7 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|228982489|ref|ZP_04142748.1| Exonuclease [Bacillus thuringiensis Bt407]
 gi|228776672|gb|EEM24980.1| Exonuclease [Bacillus thuringiensis Bt407]
          Length = 186

 Score = 40.7 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 42/160 (26%), Gaps = 7/160 (4%)

Query: 11  VFDIETT----GLDSKN--DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLH 63
           + D+E+T    G + +N    IIEIGAV L   + +    +Q F+ P       E     
Sbjct: 6   IIDLESTCFKRGAEPRNFFSEIIEIGAVVLHTETFEIVEEYQTFVKPVLFPTLSEYCLHL 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
               +   D                 +     A    +D        +R   +       
Sbjct: 66  TTIRQDEVDYGKSIKDAMNEIASLYNKYDCVFASWGFYDKKQFKQVCERFGVNYPFGHLH 125

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           I                +    K + + +      G    
Sbjct: 126 ISLKHQHGTWTRQRPMGMERALKMHHLPLEGIHHRGIDDA 165


>gi|50954845|ref|YP_062133.1| DNA polymerase III subunit epsilon [Leifsonia xyli subsp. xyli
          str. CTCB07]
 gi|50951327|gb|AAT89028.1| DNA polymerase III, epsilon subunit [Leifsonia xyli subsp. xyli
          str. CTCB07]
          Length = 227

 Score = 40.7 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 11 VFDIETTGLDSKNDRIIE--IGAVELLDYSKTNRTFQVFLCPN 51
          VFD+ETTG+D +  R++   IG ++        R++   L P 
Sbjct: 9  VFDLETTGVDVETARVVTAHIGLLDEHGEIVHGRSW--LLDPG 49


>gi|74196748|dbj|BAE43110.1| unnamed protein product [Mus musculus]
          Length = 237

 Score = 40.7 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|27229283|ref|NP_077195.2| oligoribonuclease, mitochondrial precursor [Mus musculus]
 gi|78100196|sp|Q9D8S4|ORN_MOUSE RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA
          exonuclease 2 homolog; AltName: Full=Small fragment
          nuclease; Flags: Precursor
 gi|26357838|dbj|BAB25219.2| unnamed protein product [Mus musculus]
 gi|148693756|gb|EDL25703.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Mus musculus]
          Length = 237

 Score = 40.7 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|56605730|ref|NP_001008327.1| oligoribonuclease, mitochondrial precursor [Rattus norvegicus]
 gi|81910234|sp|Q5U1X1|ORN_RAT RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA
          exonuclease 2 homolog; AltName: Full=Small fragment
          nuclease; Flags: Precursor
 gi|55562847|gb|AAH86420.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Rattus
          norvegicus]
 gi|149041578|gb|EDL95419.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_c
          [Rattus norvegicus]
          Length = 237

 Score = 40.7 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|262280955|ref|ZP_06058738.1| oligoribonuclease [Acinetobacter calcoaceticus RUH2202]
 gi|262257855|gb|EEY76590.1| oligoribonuclease [Acinetobacter calcoaceticus RUH2202]
          Length = 188

 Score = 40.7 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37
          M      R I  D+E TGLD+ ND+IIEI  +   D 
Sbjct: 1  MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDN 37


>gi|325917447|ref|ZP_08179656.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas
          vesicatoria ATCC 35937]
 gi|325536321|gb|EGD08108.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas
          vesicatoria ATCC 35937]
          Length = 194

 Score = 40.7 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIG 30
          R I  D+E TGLD+  D IIEI 
Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32


>gi|94265398|ref|ZP_01289151.1| hypothetical protein MldDRAFT_4837 [delta proteobacterium MLMS-1]
 gi|93454100|gb|EAT04432.1| hypothetical protein MldDRAFT_4837 [delta proteobacterium MLMS-1]
          Length = 184

 Score = 40.7 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 47/167 (28%), Gaps = 8/167 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M  I+FD ET G+      I  +E+ A  + D+      F+  L  N       +     
Sbjct: 1   MDWIIFDTETNGIRP---PIFTLELAAQRMRDWLPEGPPFRRLLNHNQDIQPEASRINGF 57

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PS 121
             +   +D      ++++F D+  +        +   D   I           L      
Sbjct: 58  TREILERDDEPPLEVYADFADYAADLPFVAYNLDYDLDKVLIAHRRGLHTWQQLQAFVMK 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
               +     +      ++  +  + +G      S   A        
Sbjct: 118 TWFPSRITFGKHKGRHFSEARTDPELHGWLQWLASSSNARSAEMGRW 164


>gi|254974985|ref|ZP_05271457.1| putative exonuclease [Clostridium difficile QCD-66c26]
 gi|255092373|ref|ZP_05321851.1| putative exonuclease [Clostridium difficile CIP 107932]
 gi|255314113|ref|ZP_05355696.1| putative exonuclease [Clostridium difficile QCD-76w55]
 gi|255516791|ref|ZP_05384467.1| putative exonuclease [Clostridium difficile QCD-97b34]
 gi|255649892|ref|ZP_05396794.1| putative exonuclease [Clostridium difficile QCD-37x79]
 gi|260683047|ref|YP_003214332.1| putative exonuclease [Clostridium difficile CD196]
 gi|260686645|ref|YP_003217778.1| putative exonuclease [Clostridium difficile R20291]
 gi|260209210|emb|CBA62475.1| putative exonuclease [Clostridium difficile CD196]
 gi|260212661|emb|CBE03715.1| putative exonuclease [Clostridium difficile R20291]
          Length = 1039

 Score = 40.7 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 73/251 (29%), Gaps = 27/251 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIE +GLD  N  I+E+GAV++ D+     T++  +                +    
Sbjct: 12  VFLDIEVSGLDCLNSEILEVGAVKVKDWKIY--TYESLIKNKFEVPIEVFSVCKNLDKND 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+       +     +F  +        + K      +    +     L    +I     
Sbjct: 70  LEIANEIELVEDRLVNFVEDSFIICHDLSLKKKFFEYHMPKLKNKFIDLIELAVILEPYH 129

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT-- 187
                   +N L +   +        +     + + LL             ++F   +  
Sbjct: 130 KDYSLEYLKNTLTNCNSKVENRALSDAIDIINIVNCLLVKFNNYEKTTLEPLSFKINSYL 189

Query: 188 --------------------NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
                                 +    +++  + +    K+ +    +I  EE   +++ 
Sbjct: 190 KKFNLPTWEWSKFLEEANYDLSNNINIKKEYNIFDSKEEKKKERETLKILNEEEKNYEEL 249

Query: 228 IQTLGKNAIWD 238
           ++      IW+
Sbjct: 250 LKY---KTIWE 257


>gi|145631577|ref|ZP_01787343.1| oligoribonuclease [Haemophilus influenzae R3021]
 gi|144982777|gb|EDJ90303.1| oligoribonuclease [Haemophilus influenzae R3021]
          Length = 182

 Score = 40.7 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + +RIIEI 
Sbjct: 11 IDLEMTGLDPEKERIIEIA 29


>gi|241763728|ref|ZP_04761776.1| Exonuclease RNase T and DNA polymerase III [Acidovorax
          delafieldii 2AN]
 gi|241367033|gb|EER61418.1| Exonuclease RNase T and DNA polymerase III [Acidovorax
          delafieldii 2AN]
          Length = 195

 Score = 40.7 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D E TGL+   DR++EI  V
Sbjct: 25 LDCEMTGLEPDTDRLLEIAVV 45


>gi|269213888|ref|ZP_05983052.2| oligoribonuclease [Neisseria cinerea ATCC 14685]
 gi|269145276|gb|EEZ71694.1| oligoribonuclease [Neisseria cinerea ATCC 14685]
          Length = 188

 Score = 40.7 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ + DRIIE+  +
Sbjct: 11 LDMEMTGLNPETDRIIEVAMI 31


>gi|134044532|ref|YP_001101863.1| putative exonuclease [Yersinia ruckeri]
 gi|133904895|gb|ABO40912.1| putative exonuclease [Yersinia ruckeri]
          Length = 289

 Score = 40.7 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETTGL  + D++IE+   ++             L P   +  P+A+ +HGI +  L
Sbjct: 108 VLDTETTGLG-ERDQVIELAVTDIRGAVL----LCTRLRP-TVEIDPQAMGVHGINEAEL 161

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            ++P+++ +        + ++   +  N+ FD   +                     ++
Sbjct: 162 SNEPTWNQVAPALARLLSGRH--LVIFNSSFDSRMLRQTASAFGDQLSWWQEQNCLCAM 218


>gi|302563935|ref|NP_001180742.1| oligoribonuclease, mitochondrial [Macaca mulatta]
 gi|90080269|dbj|BAE89616.1| unnamed protein product [Macaca fascicularis]
          Length = 237

 Score = 40.7 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|56751271|ref|YP_171972.1| hypothetical protein syc1262_c [Synechococcus elongatus PCC 6301]
 gi|81299062|ref|YP_399270.1| exonuclease [Synechococcus elongatus PCC 7942]
 gi|56686230|dbj|BAD79452.1| unknown protein [Synechococcus elongatus PCC 6301]
 gi|81167943|gb|ABB56283.1| Exonuclease [Synechococcus elongatus PCC 7942]
          Length = 256

 Score = 40.7 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV--FLCPN 51
          V D+ETTG      R+IE+G   L         FQ    L P 
Sbjct: 24 VVDVETTGFKPPQARVIELGI--LQATLAEGIQFQQAELLNPG 64


>gi|297153856|gb|ADI03568.1| hypothetical protein SBI_00447 [Streptomyces bingchenggensis
          BCW-1]
          Length = 200

 Score = 40.7 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 10/52 (19%)

Query: 9  KIVFDIE-TT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50
           +VFD+E TT         G   +   I++IGA+ L +       ++  + P
Sbjct: 4  FVVFDLEFTTWQGALEQDWGAPGQLREIVQIGALRLREDFSVVEEYEALVRP 55


>gi|227514420|ref|ZP_03944469.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC
           14931]
 gi|227087286|gb|EEI22598.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC
           14931]
          Length = 189

 Score = 40.7 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 63/176 (35%), Gaps = 7/176 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             I  D ET    +K      +    + +       F   + P          ++HGI +
Sbjct: 12  NFIAMDFET--ASAKRFSACSLAITIVRNSQ-IQDEFYTLINPQTPFF-WRNTQVHGIHE 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +KD P+F  ++    +F    +   IAHNA FD   +   L     +P     +    
Sbjct: 68  RDVKDAPTFPEVWEHIQEF-FTPDKLVIAHNATFDNSVLKNTLLHFEIEPPVYQTLDTLK 126

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +  +       + LN++C +  I + H   H AL D+H  +++ +           
Sbjct: 127 TSRQLFPAFPNHKLNTICDQLNIDLHH--HHNALDDAHACANILLYQANHFGTAPL 180


>gi|5817183|emb|CAB53690.1| hypothetical protein [Homo sapiens]
 gi|49065426|emb|CAG38531.1| DKFZP566E144 [Homo sapiens]
 gi|117646830|emb|CAL37530.1| hypothetical protein [synthetic construct]
 gi|208965440|dbj|BAG72734.1| REX2, RNA exonuclease 2 homolog [synthetic construct]
          Length = 237

 Score = 40.7 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|333030386|ref|ZP_08458447.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
 gi|332740983|gb|EGJ71465.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
          Length = 279

 Score = 40.7 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 51/166 (30%), Gaps = 16/166 (9%)

Query: 9   KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            I  D+ET T    +   I +IG   +LD     +     + P           +HGI +
Sbjct: 6   FIAIDVETATSAKPRF--ICQIGLAYVLDGEIVKKE-SYLVQPPHNHIEYRNTMIHGIYE 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                 P+   ++ +       +  + +AHNAKFD   I   L          S I    
Sbjct: 63  SDTAQAPTLPQVWEKIGFDL--RYNQLVAHNAKFDEAVIAENLFHFRIPNNLRSFICTYE 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +             +            + H A  D+   +  YI 
Sbjct: 121 LLHLGLEDLCYAYQIAY----------TNHHDACFDAACCAQFYIN 156


>gi|315609065|ref|ZP_07884035.1| exonuclease [Prevotella buccae ATCC 33574]
 gi|315249269|gb|EFU29288.1| exonuclease [Prevotella buccae ATCC 33574]
          Length = 163

 Score = 40.7 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 2/127 (1%)

Query: 40  TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
              +F   + P     +    ++HG+T    +  P F  ++    +   +     +AHN+
Sbjct: 32  IADSFYSLIQPEPNYYTYWCTRVHGLTQADTETAPVFPHVWERITELIGD--LPLVAHNS 89

Query: 100 KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
            FD   + A  +    D  D        +  R       + L ++    G  ++      
Sbjct: 90  PFDESCLKAVFRCYQMDYPDYRFYDTLRTARRVFPHLPNHQLQTVAAACGYDLTCHHHAL 149

Query: 160 ALLDSHL 166
           A  ++  
Sbjct: 150 ADAEACA 156


>gi|146344208|ref|YP_001202064.1| oligoribonuclease [Pseudomonas fluorescens SBW25]
 gi|40789171|emb|CAE84149.1| oligoribonuclease [Pseudomonas fluorescens]
 gi|146188020|emb|CAM96350.1| plant-inducible oligoribonuclease [Pseudomonas fluorescens SBW25]
          Length = 195

 Score = 40.7 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 12/42 (28%)

Query: 12 FDIETTGL------DSKNDRIIEIGAVELLDYSKTNRTFQVF 47
           D+ETTG            RI+EIGAV       T+  F V 
Sbjct: 16 LDLETTGFTELFDRRVYEHRILEIGAV------VTDEHFTVL 51


>gi|323498389|ref|ZP_08103386.1| oligoribonuclease [Vibrio sinaloensis DSM 21326]
 gi|323316531|gb|EGA69545.1| oligoribonuclease [Vibrio sinaloensis DSM 21326]
          Length = 181

 Score = 40.7 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 13 DIETTGLDSKNDRIIEIG 30
          D+E TGLD +  +IIEI 
Sbjct: 12 DLEMTGLDPETHKIIEIA 29


>gi|313203394|ref|YP_004042051.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter
           propionicigenes WB4]
 gi|312442710|gb|ADQ79066.1| Exonuclease RNase T and DNA polymerase III [Paludibacter
           propionicigenes WB4]
          Length = 182

 Score = 40.7 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 55/161 (34%), Gaps = 8/161 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGI 65
           M     D ET    +  +   EIG  ++ +   T ++    + P      +P   ++HGI
Sbjct: 1   MNFTAIDFET----AHAEFPCEIGLTKVENGIIT-KSQSWLIKPACFPYMNPWNQRVHGI 55

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +   +    +F  ++ E   +        +AHNA FD+  + + L   +           
Sbjct: 56  SSADVSSASTFEELWGELKLWIENDY--LVAHNAAFDMRVLRSVLAYYDLAVPRTEYFCS 113

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
                +       + L  + + + I+ +H           +
Sbjct: 114 VSISRKTWKHLPSHSLGVVSQFHNISFNHHRAGDDARACAI 154


>gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
 gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
          Length = 957

 Score = 40.7 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 9   KIVFDIETTGLDSKNDRII 27
           +I  D+ETTGLD   D I+
Sbjct: 376 QICIDLETTGLDPLRDEIV 394


>gi|226226100|ref|YP_002760206.1| DNA polymerase II [Gemmatimonas aurantiaca T-27]
 gi|226089291|dbj|BAH37736.1| DNA polymerase II [Gemmatimonas aurantiaca T-27]
          Length = 825

 Score = 40.7 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/15 (73%), Positives = 12/15 (80%)

Query: 12  FDIETTGLDSKNDRI 26
           FD+ETTGLD   DRI
Sbjct: 168 FDLETTGLDPATDRI 182


>gi|307150076|ref|YP_003885460.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
 gi|306980304|gb|ADN12185.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
          Length = 199

 Score = 40.7 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 41/135 (30%), Gaps = 15/135 (11%)

Query: 9   KIVFDIETTG----LDSKNDR---------IIEIGAVELLDYSKTN-RTFQVFLCPNGRK 54
            +V D+E T       ++ +R         IIEIGAV +     T    FQ F+ P    
Sbjct: 10  YLVLDLEATCCELLRSTEGERGTIKRHEMEIIEIGAVMVEKQDLTIVAEFQTFIKPVRYP 69

Query: 55  N-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +     L  IT   +   PS+         + +  +         +D      + +  
Sbjct: 70  ILTNFCKSLTSITQTQVDQAPSYPEAAILLKKWLSNYSNAVFGSWGDYDRHQFLQDSKFH 129

Query: 114 NKDPLDPSRIIDTLS 128
                     ++   
Sbjct: 130 QVPFPIAYPHVNLKQ 144


>gi|296216233|ref|XP_002754546.1| PREDICTED: oligoribonuclease, mitochondrial-like [Callithrix
          jacchus]
          Length = 237

 Score = 40.7 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|146327084|gb|AAI41731.1| LOC100049744 protein [Xenopus laevis]
          Length = 273

 Score = 40.7 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 9   KIVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKN-SPEALKLHG 64
            +V D E T    +     IIE   ++L     +   TF  ++ P      +P   +L G
Sbjct: 82  FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHTYVQPVVHPQLTPFCTELTG 141

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF 87
           I  + +  +P+ S +     ++ 
Sbjct: 142 IIQDMVDGQPTLSQVLERVDEWM 164


>gi|224496106|ref|NP_056338.2| oligoribonuclease, mitochondrial precursor [Homo sapiens]
 gi|55637001|ref|XP_508768.1| PREDICTED: oligoribonuclease, mitochondrial isoform 2 [Pan
          troglodytes]
 gi|116242694|sp|Q9Y3B8|ORN_HUMAN RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA
          exonuclease 2 homolog; AltName: Full=Small fragment
          nuclease; Flags: Precursor
 gi|62897961|dbj|BAD96920.1| small fragment nuclease variant [Homo sapiens]
 gi|79158846|gb|AAI07888.1| REXO2 protein [Homo sapiens]
 gi|85397890|gb|AAI05025.1| Small fragment nuclease [Homo sapiens]
 gi|85397892|gb|AAI05027.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Homo sapiens]
 gi|119587654|gb|EAW67250.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_b
          [Homo sapiens]
 gi|189065256|dbj|BAG34979.1| unnamed protein product [Homo sapiens]
 gi|219520365|gb|AAI43702.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Homo sapiens]
          Length = 237

 Score = 40.7 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|260220806|emb|CBA28738.1| Oligoribonuclease [Curvibacter putative symbiont of Hydra
          magnipapillata]
          Length = 193

 Score = 40.7 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D E TGL+ + DR++EI  +
Sbjct: 22 LDCEMTGLEPETDRLLEIAVI 42


>gi|313682518|ref|YP_004060256.1| DNA polymerase i [Sulfuricurvum kujiense DSM 16994]
 gi|313155378|gb|ADR34056.1| DNA polymerase I [Sulfuricurvum kujiense DSM 16994]
          Length = 909

 Score = 40.7 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 10  IVFDIETTGLDSKNDRII 27
           I FD ETTGLD   D ++
Sbjct: 341 IAFDTETTGLDPSKDHLV 358


>gi|300949122|ref|ZP_07163165.1| exonuclease [Escherichia coli MS 116-1]
 gi|300451432|gb|EFK15052.1| exonuclease [Escherichia coli MS 116-1]
          Length = 199

 Score = 40.7 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 19 MSANENNLIWIDLEMTGLDLERDRIIEIA 47


>gi|300836940|ref|YP_003754017.1| putative exonuclease Ycg4D [Klebsiella pneumoniae]
 gi|242205350|gb|ACS75438.1| putative exonuclease Ycg4D [Klebsiella pneumoniae]
          Length = 233

 Score = 40.7 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETTGL  + D++IE+   ++             L P   +  P+A+ +HGIT+  L
Sbjct: 108 VLDTETTGLG-ERDQVIELAVTDIRGAVL----LCTRLRP-TVEIDPQAMGVHGITETEL 161

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            ++P+++ +        + ++   +  N+ FD   +                     
Sbjct: 162 SNEPTWTQVAPALARLLSGRH--LVIFNSSFDSRMLRQTASAFGDQLSWWQEQNCLW 216


>gi|257454169|ref|ZP_05619440.1| exonuclease, Ycg4D [Enhydrobacter aerosaccus SK60]
 gi|257448430|gb|EEV23402.1| exonuclease, Ycg4D [Enhydrobacter aerosaccus SK60]
          Length = 217

 Score = 40.7 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 52/165 (31%), Gaps = 7/165 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET G   + D+IIEI   +   +   +      +    R +SP A K+HGI    L
Sbjct: 51  FFDTETIGGG-REDQIIEIAFCDSDRHVIID----TLIY-TDRTSSPGAFKVHGIYPHEL 104

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSI 129
             KP+F  I          +       N     +     +L+          +       
Sbjct: 105 IGKPTFIDIQPAIVQLLKGRTLYAYNANFDIRMMRQSGHKLRLQQVGIKCLCKQFADFIG 164

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +  +    +         I H + H A  D+     V+  M
Sbjct: 165 QYSPYFKANRYFSLSKACLHFGIEHSNAHRARPDALACVTVWQGM 209


>gi|145629185|ref|ZP_01784984.1| oligoribonuclease [Haemophilus influenzae 22.1-21]
 gi|145639128|ref|ZP_01794735.1| oligoribonuclease [Haemophilus influenzae PittII]
 gi|148827138|ref|YP_001291891.1| oligoribonuclease [Haemophilus influenzae PittGG]
 gi|166216262|sp|A5UFF2|ORN_HAEIG RecName: Full=Oligoribonuclease
 gi|144978688|gb|EDJ88411.1| oligoribonuclease [Haemophilus influenzae 22.1-21]
 gi|145271690|gb|EDK11600.1| oligoribonuclease [Haemophilus influenzae PittII]
 gi|148718380|gb|ABQ99507.1| oligoribonuclease [Haemophilus influenzae PittGG]
 gi|309750709|gb|ADO80693.1| Oligoribonuclease [Haemophilus influenzae R2866]
          Length = 182

 Score = 40.7 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + +RIIEI 
Sbjct: 11 IDLEMTGLDPEKERIIEIA 29


>gi|289620483|emb|CBI52844.1| unnamed protein product [Sordaria macrospora]
          Length = 180

 Score = 40.7 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 7/64 (10%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D E TGL+   D IIEI  +       T+      L P G        K      +   
Sbjct: 23 IDCEMTGLNPDQDAIIEIYCL------ITDEQLN-LLDPTGWGAVIHQTKARMDAMDEWC 75

Query: 72 DKPS 75
           +  
Sbjct: 76 TRVH 79


>gi|146312061|ref|YP_001177135.1| exodeoxyribonuclease X [Enterobacter sp. 638]
 gi|145318937|gb|ABP61084.1| Exodeoxyribonuclease X [Enterobacter sp. 638]
          Length = 220

 Score = 40.7 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET  L      I+E+ +V++++           + P+ R  SP+A+ +H IT+  +
Sbjct: 4   VIDTETCDL---QGGIVEVASVDVINGQIV-NPMSHLVRPD-RPISPQAMAIHRITESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEEVIPNYY-----GSTWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKSRKLNVKTPEGLHHHRALYDCYITAALLIDIMNN 153


>gi|68250317|ref|YP_249429.1| oligoribonuclease [Haemophilus influenzae 86-028NP]
 gi|148825742|ref|YP_001290495.1| oligoribonuclease [Haemophilus influenzae PittEE]
 gi|81335262|sp|Q4QJM8|ORN_HAEI8 RecName: Full=Oligoribonuclease
 gi|166216261|sp|A5UBG1|ORN_HAEIE RecName: Full=Oligoribonuclease
 gi|68058516|gb|AAX88769.1| oligoribonuclease [Haemophilus influenzae 86-028NP]
 gi|148715902|gb|ABQ98112.1| oligoribonuclease [Haemophilus influenzae PittEE]
          Length = 182

 Score = 40.7 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + +RIIEI 
Sbjct: 11 IDLEMTGLDPEKERIIEIA 29


>gi|260942501|ref|XP_002615549.1| hypothetical protein CLUG_04431 [Clavispora lusitaniae ATCC
          42720]
 gi|238850839|gb|EEQ40303.1| hypothetical protein CLUG_04431 [Clavispora lusitaniae ATCC
          42720]
          Length = 283

 Score = 40.7 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 2/57 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD   D IIEI  +           + ++  +    +             
Sbjct: 38 IDCEMTGLDIAKDHIIEICCIITDGNLNIIDEKGYESTVYVPKKVLDSMNEWCVNQH 94


>gi|73979366|ref|XP_539997.2| PREDICTED: similar to histone mRNA 3 end-specific exonuclease
           [Canis familiaris]
          Length = 349

 Score = 40.7 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T   G   +    IIE   V L  ++ +   TFQ ++ P      S   + L G
Sbjct: 132 IIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPELNTQLSDFCINLTG 191

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +  +  D+                  + +    +       +    
Sbjct: 192 ITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCRLSRLKYP 251

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++M+
Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAVRML 310

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 311 QDGCELRIN 319


>gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301]
          Length = 958

 Score = 40.7 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 10/30 (33%)

Query: 8   RKIV----------FDIETTGLDSKNDRII 27
           R++V          FD ETTG D  NDRI+
Sbjct: 377 REVVAAVGRYPEFCFDTETTGFDIFNDRIV 406


>gi|307720332|ref|YP_003891472.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
          autotrophica DSM 16294]
 gi|306978425|gb|ADN08460.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
          autotrophica DSM 16294]
          Length = 247

 Score = 40.7 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 9  KIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQV 46
           ++ D ETTG + + DR+I++G  V      + +  F  
Sbjct: 5  YVILDTETTGTN-EEDRVIQLGYMVLGAKEIEVHNEFCS 42


>gi|118602011|ref|YP_908711.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
 gi|118614749|ref|YP_908532.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
 gi|134044854|ref|YP_001102265.1| putative exonuclease [Yersinia pestis biovar Orientalis str. IP275]
 gi|134047136|ref|YP_001102053.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|165937990|ref|ZP_02226550.1| exonuclease, Ycg4D [Yersinia pestis biovar Orientalis str. IP275]
 gi|229516080|ref|ZP_04405530.1| hypothetical protein VCC_000094 [Vibrio cholerae RC9]
 gi|237810081|ref|YP_002894521.1| exonuclease family protein [Escherichia coli]
 gi|237810261|ref|YP_002894700.1| exonuclease family protein [Salmonella enterica]
 gi|300927181|ref|ZP_07142918.1| exonuclease [Escherichia coli MS 182-1]
 gi|309796486|ref|ZP_07690894.1| exonuclease [Escherichia coli MS 145-7]
 gi|118596840|dbj|BAF38144.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
 gi|118597020|dbj|BAF38323.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
 gi|133905055|gb|ABO41070.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|133905388|gb|ABO42150.1| putative exonuclease [Yersinia pestis biovar Orientalis str. IP275]
 gi|165914013|gb|EDR32630.1| exonuclease, Ycg4D [Yersinia pestis biovar Orientalis str. IP275]
 gi|229346860|gb|EEO11828.1| hypothetical protein VCC_000094 [Vibrio cholerae RC9]
 gi|229561745|gb|ACQ77947.1| exonuclease family protein [Salmonella enterica]
 gi|229561937|gb|ACQ78138.1| exonuclease family protein [Escherichia coli]
 gi|300416848|gb|EFK00159.1| exonuclease [Escherichia coli MS 182-1]
 gi|308119991|gb|EFO57253.1| exonuclease [Escherichia coli MS 145-7]
 gi|324008196|gb|EGB77415.1| exonuclease [Escherichia coli MS 57-2]
 gi|327536618|gb|AEA95451.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Dublin]
          Length = 289

 Score = 40.7 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 8/119 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETTGL  + D++IE+   ++             L P   +  P+A+ +HGIT+  L
Sbjct: 108 VLDTETTGLG-ERDQVIELAVTDIRGAVL----LCTRLRP-TVEIDPQAMGVHGITETEL 161

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            ++P+++ +        + ++   +  N+ FD   +                     ++
Sbjct: 162 SNEPTWTQVAPALARLLSGRH--LVIFNSSFDSRMLRQTASAFGDQLSWWQEQNCLCAM 218


>gi|259501466|ref|ZP_05744368.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners DSM 13335]
 gi|302191565|ref|ZP_07267819.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus iners AB-1]
 gi|309803902|ref|ZP_07697986.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 11V1-d]
 gi|309804516|ref|ZP_07698582.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
 gi|309806946|ref|ZP_07700929.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
 gi|309808365|ref|ZP_07702268.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
 gi|309809203|ref|ZP_07703075.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
 gi|325912750|ref|ZP_08175130.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
 gi|329919994|ref|ZP_08276872.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 1401G]
 gi|259167134|gb|EEW51629.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners DSM 13335]
 gi|308163997|gb|EFO66260.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 11V1-d]
 gi|308166169|gb|EFO68386.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
 gi|308166670|gb|EFO68866.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
 gi|308168428|gb|EFO70543.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
 gi|308170503|gb|EFO72524.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
 gi|325477964|gb|EGC81096.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
 gi|328936765|gb|EGG33205.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 1401G]
          Length = 177

 Score = 40.7 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 60/167 (35%), Gaps = 7/167 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET   +   D    +  V + D      +F   + P         +K+HGIT
Sbjct: 1   MNFTAMDFET--ANRHYDSACSLALVLVRDNKII-DSFYTVINPQ-MPFDKNNIKIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +KD P+             +     +AHNA+FD   +   L++ N        I   
Sbjct: 57  ANDVKDAPT-MDEVWPKIRLLFQPGMLVVAHNARFDCNVMKKSLKKYNIAEPHYLTIDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +            L+++  +  I + H   H AL DS   +++ IK
Sbjct: 116 ATSRALMPNLKNYRLDTVSNQLNIDLWH--HHNALSDSEACAEILIK 160


>gi|295698463|ref|YP_003603118.1| oligoribonuclease [Candidatus Riesia pediculicola USDA]
 gi|291157191|gb|ADD79636.1| oligoribonuclease [Candidatus Riesia pediculicola USDA]
          Length = 184

 Score = 40.3 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M+R  K   I  D+E TGL+ K D+IIEI 
Sbjct: 1  MLRDKK-NLIWIDLEMTGLNPKRDKIIEIA 29


>gi|260582817|ref|ZP_05850603.1| oligoribonuclease [Haemophilus influenzae NT127]
 gi|260094143|gb|EEW78045.1| oligoribonuclease [Haemophilus influenzae NT127]
          Length = 182

 Score = 40.3 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + +RIIEI 
Sbjct: 11 IDLEMTGLDPEKERIIEIA 29


>gi|126165254|ref|NP_001075204.1| oligoribonuclease, mitochondrial precursor [Bos taurus]
 gi|158512836|sp|A2VE52|ORN_BOVIN RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA
          exonuclease 2 homolog; AltName: Full=Small fragment
          nuclease; Flags: Precursor
 gi|126010762|gb|AAI33576.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Bos taurus]
 gi|296480277|gb|DAA22392.1| oligoribonuclease, mitochondrial precursor [Bos taurus]
          Length = 237

 Score = 40.3 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|294665061|ref|ZP_06730367.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str.
          ICPB 10535]
 gi|292605179|gb|EFF48524.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str.
          ICPB 10535]
          Length = 194

 Score = 40.3 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIG 30
          R I  D+E TGLD+  D IIEI 
Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32


>gi|301782497|ref|XP_002926662.1| PREDICTED: oligoribonuclease, mitochondrial-like [Ailuropoda
          melanoleuca]
 gi|281353930|gb|EFB29514.1| hypothetical protein PANDA_016351 [Ailuropoda melanoleuca]
          Length = 237

 Score = 40.3 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|312871342|ref|ZP_07731439.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 3008A-a]
 gi|312875261|ref|ZP_07735270.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2053A-b]
 gi|311089224|gb|EFQ47659.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2053A-b]
 gi|311093135|gb|EFQ51482.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 3008A-a]
          Length = 177

 Score = 40.3 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 7/167 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET   +   D    +  V + D      +F   + P         +K+HGIT
Sbjct: 1   MNFTAMDFET--ANRHYDSACSLALVLVRDNKII-DSFYTVINPQ-MPFDKNNIKIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +KD P+  +          +     +AHNA+FD   +   L++ N        I   
Sbjct: 57  ANDVKDAPT-MNEVWPKIRLLFQPGMLVVAHNARFDCNVMKKSLKKYNIAEPHYLTIDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +            L+++  +  I + H   H AL DS   +++ IK
Sbjct: 116 ATSRALMPNLKNYRLDTVSNQLNIDLWH--HHNALSDSEACAEILIK 160


>gi|289672571|ref|ZP_06493461.1| oligoribonuclease [Pseudomonas syringae pv. syringae FF5]
          Length = 178

 Score = 40.3 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +NK   I  D+E TGLD   D IIEI 
Sbjct: 2  QNKQNLIWIDLEMTGLDPDTDVIIEIA 28


>gi|88800702|ref|ZP_01116261.1| oligoribonuclease [Reinekea sp. MED297]
 gi|88776566|gb|EAR07782.1| oligoribonuclease [Reinekea sp. MED297]
          Length = 182

 Score = 40.3 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+ + D+I+EI 
Sbjct: 10 IDLEMTGLNPETDQILEIA 28


>gi|300741385|ref|ZP_07071406.1| oligoribonuclease [Rothia dentocariosa M567]
 gi|300380570|gb|EFJ77132.1| oligoribonuclease [Rothia dentocariosa M567]
          Length = 211

 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPN 51
          R +  D E TGLD   D +IEIG  V   D +      ++ + P 
Sbjct: 7  RIVWIDCEMTGLDLTQDALIEIGVLVTDSDLNILGEGVELVIKPG 51


>gi|257483793|ref|ZP_05637834.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 81

 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNIS-----LLKRDKPLFTRITKEELDEHDKTIQTLG 232
           G Q +     N        + +    S        R      R ++ EL EH+  + T+ 
Sbjct: 1   GGQTSLSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIA 60

Query: 233 KN----AIWDRYISS 243
           K     A+W + + +
Sbjct: 61  KASGAPALWVQMLEA 75


>gi|282856350|ref|ZP_06265629.1| putative DNA polymerase III PolC-type (PolIII) [Pyramidobacter
           piscolens W5455]
 gi|282585721|gb|EFB91010.1| putative DNA polymerase III PolC-type (PolIII) [Pyramidobacter
           piscolens W5455]
          Length = 351

 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 53/169 (31%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTG---LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            +V D+E+ G           IEI AV      +    +   + P   + S     L GI
Sbjct: 15  YVVLDVESQGYARFCP-----IEISAVRFAPDGQCLDAYSSLVRPRVARVSRYVSDLTGI 69

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + ++  P    +     DF  +      A  A+ D+  I+   Q +    L+   +  
Sbjct: 70  TTDMVRRAPLPREVIGSLRDFIGDSVIVGHAV-AENDLPIIDHFCQELYHARLENLYVDT 128

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                           N         I  ++ H A  D    + +Y  +
Sbjct: 129 FYWAQALFPALGTGHYNLKALAEHFVIDAQTFHRAEADCRTTARLYQIL 177


>gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1]
 gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1]
          Length = 905

 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 10  IVFDIETTGLDSKNDRII 27
           + FD ETTGLD + D+++
Sbjct: 337 VAFDTETTGLDYEKDKLV 354


>gi|126666943|ref|ZP_01737919.1| oligoribonuclease [Marinobacter sp. ELB17]
 gi|126628659|gb|EAZ99280.1| oligoribonuclease [Marinobacter sp. ELB17]
          Length = 180

 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M + N  R +  D+E TGLD + +RIIE+ 
Sbjct: 1  MAKGN--RLVWIDLEMTGLDPEQERIIEMA 28


>gi|16273602|ref|NP_439857.1| oligoribonuclease [Haemophilus influenzae Rd KW20]
 gi|260581056|ref|ZP_05848878.1| oligoribonuclease [Haemophilus influenzae RdAW]
 gi|1176352|sp|P45340|ORN_HAEIN RecName: Full=Oligoribonuclease
 gi|1574570|gb|AAC23360.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092296|gb|EEW76237.1| oligoribonuclease [Haemophilus influenzae RdAW]
          Length = 182

 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + +RIIEI 
Sbjct: 11 IDLEMTGLDPEKERIIEIA 29


>gi|84393404|ref|ZP_00992163.1| ribonuclease T [Vibrio splendidus 12B01]
 gi|84376013|gb|EAP92902.1| ribonuclease T [Vibrio splendidus 12B01]
          Length = 71

 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34
          +V D+ET G +++ D ++EI A+ L
Sbjct: 47 VVIDVETAGFNAETDALLEICAITL 71


>gi|289665843|ref|ZP_06487424.1| oligoribonuclease [Xanthomonas campestris pv. vasculorum
          NCPPB702]
 gi|289669068|ref|ZP_06490143.1| oligoribonuclease [Xanthomonas campestris pv. musacearum
          NCPPB4381]
          Length = 194

 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIG 30
          R I  D+E TGLD+  D IIEI 
Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32


>gi|257094889|ref|YP_003168530.1| Exonuclease RNase T and DNA polymerase III [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047413|gb|ACV36601.1| Exonuclease RNase T and DNA polymerase III [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 181

 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT 40
           D+E TGLD + +RIIE+  V       T
Sbjct: 11 LDMEMTGLDPERERIIELAIVITDGQLAT 39


>gi|229591814|ref|YP_002873933.1| hypothetical protein PFLU4398 [Pseudomonas fluorescens SBW25]
 gi|229363680|emb|CAY51043.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 180

 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 5/112 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            ++ D+E TT   G       +IEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLIIDLEATTDEGGWPVTEMEVIEIGASLVNRQGRELDHFQRFVRPLRRPLLTPFCRQLT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            IT   +      + ++  F  +  + +A      +  D      EL+    
Sbjct: 64  HITQANMDGAAPITEVWPLFERWLGQHHARLEGWASWGDYDRAQLELEWQRH 115


>gi|330961285|gb|EGH61545.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 180

 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E TT   G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPVRRPLLTHFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            IT   +      ++++ +F  +     A  +   +  D      E +  N  
Sbjct: 64  HITQSNIDSAAPLTAVWPQFERWLAHHRARVVGWASWGDYDRQQLEEEWRNHQ 116


>gi|262045749|ref|ZP_06018713.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
 gi|260573708|gb|EEX30264.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
          Length = 177

 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHYPESA--CSLALVMVRNNKIVDR-FYTVINPQ-MPFDARNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            E +K+ P+ + ++    +   +      AHNA+FD   +   L R   +    
Sbjct: 57  AEDVKNAPTMAEVWPHIKE-LYQPGMLVAAHNARFDTNVMRQSLARYGIEEPHY 109


>gi|82701847|ref|YP_411413.1| oligoribonuclease [Nitrosospira multiformis ATCC 25196]
 gi|82409912|gb|ABB74021.1| Exonuclease [Nitrosospira multiformis ATCC 25196]
          Length = 184

 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          M + N  R I  D+E +GL    DRI+EI  V
Sbjct: 1  MTQDNG-RLIWIDMEMSGLSPDRDRILEIALV 31


>gi|300855094|ref|YP_003780078.1| putative exonuclease [Clostridium ljungdahlii DSM 13528]
 gi|300435209|gb|ADK14976.1| predicted exonuclease [Clostridium ljungdahlii DSM 13528]
          Length = 202

 Score = 40.3 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 62/200 (31%), Gaps = 3/200 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I FD ETTGL   N  I ++  + +   +K  +T    +        P A K+HG T
Sbjct: 1   MNMIFFDTETTGLRPGN--ICQLSYILVDTSAKPTKTIGKNIFFAVDYIEPSAEKVHGFT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E L    S  +      +F N+     I      +        +  N + +   +    
Sbjct: 59  VETLYKLSSGMNFKDHLDEFLNDFQNADILIGHNVNFDIKFLSSEFKNCNEILNIKHT-F 117

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            ++   K+  +  +  + CK   +    R  H      + +S  Y           F   
Sbjct: 118 CTMNYYKNICNLKNRYNKCKAPRLEEVVRFLHIENPYINAVSKKYFNGTGNFHDARFDTT 177

Query: 187 TNEDRFFKEEKKTVPNISLL 206
                  +  KK        
Sbjct: 178 ATYLLVTEGIKKGYIPKRYF 197


>gi|294625309|ref|ZP_06703946.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str.
          ICPB 11122]
 gi|292600378|gb|EFF44478.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str.
          ICPB 11122]
          Length = 194

 Score = 40.3 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIG 30
          R I  D+E TGLD+  D IIEI 
Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32


>gi|291617739|ref|YP_003520481.1| ExoX [Pantoea ananatis LMG 20103]
 gi|291152769|gb|ADD77353.1| ExoX [Pantoea ananatis LMG 20103]
          Length = 223

 Score = 40.3 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 72/209 (34%), Gaps = 20/209 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V+++D           + P+ R  S +A+ +H I++  +
Sbjct: 5   VIDTETCGL---QGGVVEVASVDVIDGQIV-NPMSDLVSPD-RPISRQAMAVHRISEAMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             KP        +       +  ++AHNA FD   +                 I T+++A
Sbjct: 60  MGKPPIEEAILRYH-----GSPFYVAHNASFDRRMLPE----------MHGEWICTMTLA 104

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R+  P  +    +L     + ++  +   A    +        ++       +       
Sbjct: 105 RQLWPGIKYGNQALRHSLKLDVTPPADLHAHRALYDCYVTAALLIRIMELSGWRADEMSL 164

Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           R     ++         R + L     K+
Sbjct: 165 RSQPAAQRDDVLPFGKYRGQALAVVARKD 193


>gi|255528639|ref|ZP_05395399.1| Exonuclease RNase T and DNA polymerase III [Clostridium
          carboxidivorans P7]
 gi|296185899|ref|ZP_06854305.1| exonuclease [Clostridium carboxidivorans P7]
 gi|255507668|gb|EET84148.1| Exonuclease RNase T and DNA polymerase III [Clostridium
          carboxidivorans P7]
 gi|296049567|gb|EFG88995.1| exonuclease [Clostridium carboxidivorans P7]
          Length = 196

 Score = 40.3 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEI 29
          M+KI  D ETTGL+     II++
Sbjct: 1  MKKIFLDTETTGLEPGQ--IIQL 21


>gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
 gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
          Length = 959

 Score = 40.3 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 6/26 (23%)

Query: 8   RKIV------FDIETTGLDSKNDRII 27
           R++       FD ETTG D  NDRI+
Sbjct: 382 REVAACPEFCFDTETTGFDIFNDRIV 407


>gi|15602765|ref|NP_245837.1| oligoribonuclease [Pasteurella multocida subsp. multocida str.
          Pm70]
 gi|13431730|sp|P57885|ORN_PASMU RecName: Full=Oligoribonuclease
 gi|12721214|gb|AAK02984.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 184

 Score = 40.3 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37
          ++ +K   I  D+E TGLD +++RIIEI  +    +
Sbjct: 1  MQLDKQNLIWIDLEMTGLDPESERIIEIATIVTDKH 36


>gi|319948005|ref|ZP_08022182.1| oligoribonuclease [Dietzia cinnamea P4]
 gi|319438351|gb|EFV93294.1| oligoribonuclease [Dietzia cinnamea P4]
          Length = 222

 Score = 40.3 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D E TGLD+ ND+++EI A+
Sbjct: 26 RIVWIDCEMTGLDTTNDKLVEIAAL 50


>gi|319776026|ref|YP_004138514.1| oligoribonuclease [Haemophilus influenzae F3047]
 gi|317450617|emb|CBY86837.1| oligoribonuclease [Haemophilus influenzae F3047]
          Length = 182

 Score = 40.3 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + +RIIEI 
Sbjct: 11 IDLEMTGLDPEKERIIEIA 29


>gi|260801283|ref|XP_002595525.1| hypothetical protein BRAFLDRAFT_69069 [Branchiostoma floridae]
 gi|229280772|gb|EEN51537.1| hypothetical protein BRAFLDRAFT_69069 [Branchiostoma floridae]
          Length = 222

 Score = 40.3 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 40/138 (28%), Gaps = 6/138 (4%)

Query: 9   KIVFDIETTGLDSKND----RIIEIGAVELLD-YSKTNRTFQVFLCP-NGRKNSPEALKL 62
             V D E T +  +       IIE GAV +     +    F  F  P           +L
Sbjct: 10  YCVVDFEATCIKPRRADFRTEIIEFGAVIVDGSNFQMADEFHEFCRPVENPVLHQFCKEL 69

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI  + +     F  +F  F  + + +           D  F   ++ R   +    S 
Sbjct: 70  TGIQQDTVDSADPFPVVFDRFQKWLSNRGLIDSNFALVTDGIFDCNQIMRSQCEVSQMSF 129

Query: 123 IIDTLSIARRKHPSSRND 140
                  +  K    +  
Sbjct: 130 PSFARRFSNIKIHYMQFM 147


>gi|198274893|ref|ZP_03207425.1| hypothetical protein BACPLE_01052 [Bacteroides plebeius DSM 17135]
 gi|198272340|gb|EDY96609.1| hypothetical protein BACPLE_01052 [Bacteroides plebeius DSM 17135]
          Length = 163

 Score = 40.3 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 4/139 (2%)

Query: 37  YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
             +   TF   + P     +    ++HG+T E  +D P F +++++            +A
Sbjct: 29  NGEIADTFYSLINPEPNYYTYWCSQVHGLTREDTEDAPVFPAVWAQIEPLIEG--LPLVA 86

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
           HN  FD   + A  +    D  D           R       + L+++    G      +
Sbjct: 87  HNRPFDESCLKAVFRVYQMDYPDYEFYDTLCVARRVFPELPNHQLHTVAAACG--YRLEN 144

Query: 157 KHGALLDSHLLSDVYIKMM 175
            H AL D+   + +  +++
Sbjct: 145 HHHALADAEACAWIAREIL 163


>gi|74214051|dbj|BAE29442.1| unnamed protein product [Mus musculus]
          Length = 228

 Score = 40.3 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 24 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 57


>gi|330902548|gb|EGH33563.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 58

 Score = 40.3 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 196 EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDRYISS 243
            + +        R      R ++ EL EH+  + T+ K      +W + + +
Sbjct: 1   NRASEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKACGAPPLWVQMLEA 52


>gi|166712351|ref|ZP_02243558.1| oligoribonuclease [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 194

 Score = 40.3 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIG 30
          R I  D+E TGLD+  D IIEI 
Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32


>gi|56707099|ref|YP_170696.1| putative exonuclease [Streptomyces albulus]
 gi|56675918|dbj|BAD80780.1| putative exonuclease [Streptomyces albulus]
          Length = 288

 Score = 40.3 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDE 68
           ++ D ETT LD    +IIEI  ++              + P  G +  P+A  +H +T E
Sbjct: 131 VLLDTETTALD---GQIIEIAILDAATGRPL---LDTLVKPTEGVEIDPQAHAVHRLTLE 184

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P +  +  +       ++   +A++A FD G I    +++ K P+  +   +   
Sbjct: 185 DLADAPPWEKVLPKVRK--LTKDRTILAYHAAFDRGRIIDHTEQVGKRPMHLADPDNWWC 242

Query: 129 IARRKHPSSRNDLN 142
           + + +     +   
Sbjct: 243 LMQARSQFYGHGRR 256


>gi|312795486|ref|YP_004028408.1| Oligoribonuclease [Burkholderia rhizoxinica HKI 454]
 gi|312167261|emb|CBW74264.1| Oligoribonuclease (EC 3.1.-.-) [Burkholderia rhizoxinica HKI 454]
          Length = 204

 Score = 40.3 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL    DRIIE+  V
Sbjct: 24 LDMEMTGLLPNTDRIIEVAVV 44


>gi|260588886|ref|ZP_05854799.1| exonuclease family protein [Blautia hansenii DSM 20583]
 gi|260540665|gb|EEX21234.1| exonuclease family protein [Blautia hansenii DSM 20583]
          Length = 320

 Score = 40.3 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 18/57 (31%)

Query: 7  MRKIVFDIETTGLDSKND-------------RIIEIGAVELLDYSKTNRTFQVFLCP 50
          M  IVFD+E                       IIEIGAV+L +      +FQ  + P
Sbjct: 1  MNYIVFDLE-----WNQCPYGKEKENKKLPFEIIEIGAVKLDENRNIVDSFQEIIKP 52


>gi|311263942|ref|XP_003129926.1| PREDICTED: oligoribonuclease, mitochondrial-like [Sus scrofa]
          Length = 237

 Score = 40.3 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|46205666|ref|ZP_00048224.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
          exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 187

 Score = 40.3 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETTGLD   DR++    V     +   RT+   L P G +   EA  +HGIT+    
Sbjct: 14 LDTETTGLDVDVDRVVTAALVLREPGATHVRTW--LLDP-GVEIPAEATGIHGITNAHAT 70

Query: 72 DK 73
            
Sbjct: 71 AH 72


>gi|313217587|emb|CBY38652.1| unnamed protein product [Oikopleura dioica]
 gi|313232309|emb|CBY09418.1| unnamed protein product [Oikopleura dioica]
          Length = 627

 Score = 40.3 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 49/177 (27%), Gaps = 11/177 (6%)

Query: 9   KIVFDIETTG-----LDSKNDRIIEI-GA-VELLDYSKTNRTFQVFLCPNGRKN-SPEAL 60
            +  D E T       +     IIE     V +         F  ++ P  + + S   +
Sbjct: 87  FVCIDFEATCERNNTFNYP-HEIIEFPACLVHIESRKIVGE-FHSYVRPFRKAHLSDFCM 144

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLD 119
           +L GIT E +   P F  +F +F  +           +          +     +     
Sbjct: 145 ELTGITQEKVDQAPYFPQVFKQFVGWLRSYGLLDQTSDGRVKISKHTPSWTLLTDSPADI 204

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
              +     +     P +        K+  +++     H        + ++    M 
Sbjct: 205 CKFLAKQCEMDDIAFPYNWASRYCNIKKIFMSVYKPKYHRFTPKIEDMLEILGMEMR 261


>gi|257467741|ref|ZP_05631837.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium ulcerans
           ATCC 49185]
 gi|317062034|ref|ZP_07926519.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
 gi|313687710|gb|EFS24545.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
          Length = 186

 Score = 40.3 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 57/189 (30%), Gaps = 22/189 (11%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-------------NG 52
           M+ +  D ET G+ ++   +I++ G V++    +    F  ++ P              G
Sbjct: 1   MKILFVDTETGGI-TERSALIQLSGIVQI--GKEVAEEFNFYIKPFPGSEVTDEALKIQG 57

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           R                   K     I     +         +  +      F+    ++
Sbjct: 58  RTREEVETYDSEEEVFIKFMKILNKHIDKYNKEDKFLVGGYNVRFDIDVINRFLKRNGEK 117

Query: 113 INKDPLD-----PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                +      P + I  L + ++      N L + C  +GI +        +  +  L
Sbjct: 118 YLFSYIQATTLDPLQWIAALQLLKKIPVLKDNKLETWCNHFGIELKAHDSLEDIKATKAL 177

Query: 168 SDVYIKMMV 176
           +   + +M 
Sbjct: 178 TKKMMLLMR 186


>gi|62079013|ref|NP_001014165.1| 3'-5' exoribonuclease 1 [Rattus norvegicus]
 gi|78098993|sp|Q5FVR4|ERI1_RAT RecName: Full=3'-5' exoribonuclease 1; AltName: Full=Histone mRNA
           3'-exonuclease 1
 gi|58476450|gb|AAH89828.1| Three prime histone mRNA exonuclease 1 [Rattus norvegicus]
 gi|149057952|gb|EDM09195.1| three prime histone mRNA exonuclease 1 [Rattus norvegicus]
          Length = 345

 Score = 40.3 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T   G  ++    IIE   V L  +  +   TFQ ++ P      S   + L G
Sbjct: 128 IIDFEATCEEGNPAEFLHEIIEFPVVLLNTHSLEIEDTFQQYVRPEVNSQLSEFCIGLTG 187

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +  +  ++                  + +    +       +    
Sbjct: 188 ITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLNIQCQLSRLKYP 247

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++M+
Sbjct: 248 SFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAVRML 306

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 307 QDGCELRIN 315


>gi|315125481|ref|YP_004067484.1| oligoribonuclease [Pseudoalteromonas sp. SM9913]
 gi|315013994|gb|ADT67332.1| oligoribonuclease [Pseudoalteromonas sp. SM9913]
          Length = 181

 Score = 40.3 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +  NK   I  D+E TGL+ + D+I+EI  V
Sbjct: 1  MTINKSNLIWLDLEMTGLEPETDKILEIATV 31


>gi|171057672|ref|YP_001790021.1| oligoribonuclease [Leptothrix cholodnii SP-6]
 gi|170775117|gb|ACB33256.1| Exonuclease RNase T and DNA polymerase III [Leptothrix cholodnii
          SP-6]
          Length = 187

 Score = 40.3 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          + +N +  I  D+E TGLD   DR+IEI  V
Sbjct: 7  LPRNDLNLIWIDMEMTGLDPMTDRVIEIAVV 37


>gi|331083424|ref|ZP_08332536.1| hypothetical protein HMPREF0992_01460 [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|330404117|gb|EGG83665.1| hypothetical protein HMPREF0992_01460 [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 320

 Score = 40.3 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 18/57 (31%)

Query: 7  MRKIVFDIETTGLDSKND-------------RIIEIGAVELLDYSKTNRTFQVFLCP 50
          M  IVFD+E                       IIEIGAV+L +      +FQ  + P
Sbjct: 1  MNYIVFDLE-----WNQCPYGKEKENKKLPFEIIEIGAVKLDENRNIVDSFQEIIKP 52


>gi|283458223|ref|YP_003362841.1| oligoribonuclease [Rothia mucilaginosa DY-18]
 gi|283134256|dbj|BAI65021.1| oligoribonuclease [Rothia mucilaginosa DY-18]
          Length = 228

 Score = 40.3 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR 53
          R +  D E TGLD +ND ++E+G +    D +      +  + P   
Sbjct: 7  RIVWIDCEMTGLDVENDALVEVGVLVTDADLNILGSGVEFVIKPGDE 53


>gi|255326016|ref|ZP_05367104.1| oligoribonuclease [Rothia mucilaginosa ATCC 25296]
 gi|255296907|gb|EET76236.1| oligoribonuclease [Rothia mucilaginosa ATCC 25296]
          Length = 228

 Score = 40.3 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR 53
          R +  D E TGLD +ND ++E+G +    D +      +  + P   
Sbjct: 7  RIVWIDCEMTGLDVENDALVEVGVLVTDADLNILGSGVEFVIKPGDE 53


>gi|148225871|ref|NP_001088822.1| REX2, RNA exonuclease 2 homolog [Xenopus laevis]
 gi|126631799|gb|AAI33811.1| LOC496097 protein [Xenopus laevis]
          Length = 186

 Score = 40.3 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          M +    R +  D+E TGLD + D IIE+  +
Sbjct: 1  MAKDMGQRMVWVDLEMTGLDIEKDEIIEMACL 32


>gi|302923273|ref|XP_003053640.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734581|gb|EEU47927.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 216

 Score = 40.3 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLC-PNGR 53
           D E TGLD  ND I+EI  +             F   +  P  R
Sbjct: 23 IDCEMTGLDQDNDEILEIYCIITTGNLEILDEEGFHAIIHWPQSR 67


>gi|119961384|ref|YP_948135.1| oligoribonuclease [Arthrobacter aurescens TC1]
 gi|119948243|gb|ABM07154.1| putative oligoribonuclease [Arthrobacter aurescens TC1]
          Length = 211

 Score = 40.3 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 39/152 (25%), Gaps = 10/152 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D E TGLD  ND +IE+ A V   + +       V + P+          +  + 
Sbjct: 7   RIVWIDCEMTGLDLTNDALIEVAALVTDSELNILGDGVDVVIKPDDAALEQMNDFVRDMH 66

Query: 67  DEFLKDKPSFSSIFS---------EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                                       +  +     +  N+        A       + 
Sbjct: 67  TRSKLLDELPHGKTMAEAEAQVLEYIEKWVPDPRKAPLGGNSVGTDRMFLARDMPNIVEH 126

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
           L    I  +      +    R    S  K  G
Sbjct: 127 LHYRVIDVSTIKELSRRWFPRAYFQSPAKHGG 158


>gi|327394158|dbj|BAK11580.1| exodeoxyribonuclease X exoX [Pantoea ananatis AJ13355]
          Length = 223

 Score = 40.3 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 72/209 (34%), Gaps = 20/209 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V+++D           + P+ R  S +A+ +H IT+  +
Sbjct: 5   VIDTETCGL---QGGVVEVASVDVIDGQIV-NPMSDLVSPD-RPISRQAMAVHRITEAMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             KP        +       +  ++AHNA FD   +                 I T+++A
Sbjct: 60  MGKPPIEEAILRYH-----GSPFYVAHNASFDRRMLPE----------MHGEWICTMTLA 104

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R+  P  +    +L     + ++  +   A    +        ++       +       
Sbjct: 105 RQLWPGIKYGNQALRHSLKLDVTPPADLHAHRALYDCYVTAALLIRIMDLSGWRADEMSL 164

Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           R     ++         R + L     K+
Sbjct: 165 RSQPAAQRDDVLPFGKYRGQALAVVARKD 193


>gi|302848573|ref|XP_002955818.1| hypothetical protein VOLCADRAFT_66302 [Volvox carteri f.
          nagariensis]
 gi|300258786|gb|EFJ43019.1| hypothetical protein VOLCADRAFT_66302 [Volvox carteri f.
          nagariensis]
          Length = 196

 Score = 40.3 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37
           D+E TGLD + D IIE+  +     
Sbjct: 22 VDLEMTGLDIERDTIIEVACIITDGD 47


>gi|254509115|ref|ZP_05121216.1| oligoribonuclease [Vibrio parahaemolyticus 16]
 gi|219547953|gb|EED24977.1| oligoribonuclease [Vibrio parahaemolyticus 16]
          Length = 181

 Score = 40.3 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 13 DIETTGLDSKNDRIIEIG 30
          D+E TGLD +  +IIEI 
Sbjct: 12 DLEMTGLDPETHKIIEIA 29


>gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
 gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
          Length = 662

 Score = 40.3 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 3/25 (12%)

Query: 10 IV-FDIETTGLDSKNDRI--IEIGA 31
          +V  DIETTGLD     I  I+I A
Sbjct: 68 VVGLDIETTGLDPHTSEISLIQIAA 92


>gi|288926311|ref|ZP_06420235.1| exonuclease [Prevotella buccae D17]
 gi|288336916|gb|EFC75278.1| exonuclease [Prevotella buccae D17]
          Length = 163

 Score = 40.3 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 2/127 (1%)

Query: 40  TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
              +F   + P     +    ++HG+T    +  P F  ++    +   +     +AHN+
Sbjct: 32  IADSFYSLIQPESNYYTYWCTRVHGLTQADTETAPVFPHVWERITELIGD--LPLVAHNS 89

Query: 100 KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
            FD   + A  +    D  D        +  R       + L ++    G  ++      
Sbjct: 90  PFDESCLKAVFRCYQMDYPDYRFYDTLRTARRVFPHLPNHQLQTVAAACGYDLTCHHHAL 149

Query: 160 ALLDSHL 166
           A  ++  
Sbjct: 150 ADAEACA 156


>gi|269977856|ref|ZP_06184812.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
 gi|306818377|ref|ZP_07452103.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|307701469|ref|ZP_07638488.1| exonuclease [Mobiluncus mulieris FB024-16]
 gi|269933936|gb|EEZ90514.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
 gi|304648886|gb|EFM46185.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|307613379|gb|EFN92629.1| exonuclease [Mobiluncus mulieris FB024-16]
          Length = 258

 Score = 40.3 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
          FD ETTG+  + DRI     +  +    T   +   + P 
Sbjct: 37 FDTETTGVWVRRDRIATASLIRRVGGEDT--AYNWVINPG 74


>gi|227875110|ref|ZP_03993255.1| DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC
          35243]
 gi|227844388|gb|EEJ54552.1| DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC
          35243]
          Length = 258

 Score = 40.3 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
          FD ETTG+  + DRI     +  +    T   +   + P 
Sbjct: 37 FDTETTGVWVRRDRIATASLIRRVGGEDT--AYNWVINPG 74


>gi|332142294|ref|YP_004428032.1| Endodeoxyribonuclease [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552316|gb|AEA99034.1| Endodeoxyribonuclease [Alteromonas macleodii str. 'Deep ecotype']
          Length = 194

 Score = 40.3 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 10/91 (10%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQ------VFLCPNGR 53
          MIR  KM+ ++ DIET G    +  I+ IGAV    +  +T RTF         +     
Sbjct: 1  MIR--KMKDVMIDIETVGTQPYS-AIVSIGAVFFDPFTGETGRTFYDVISLDSCIKHGLV 57

Query: 54 KNSPEALKLHGITDEFLKDKPSFSSIFSEFW 84
           +            E  K    F     +  
Sbjct: 58 MDPSTIQWWIKQDKEAAKVFFGFKRNLPDVM 88


>gi|21242783|ref|NP_642365.1| oligoribonuclease [Xanthomonas axonopodis pv. citri str. 306]
 gi|23821917|sp|Q8PKW8|ORN_XANAC RecName: Full=Oligoribonuclease
 gi|21108265|gb|AAM36901.1| oligoribonuclease [Xanthomonas axonopodis pv. citri str. 306]
          Length = 194

 Score = 40.3 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIG 30
          R I  D+E TGLD+  D IIEI 
Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32


>gi|255306398|ref|ZP_05350569.1| putative exonuclease [Clostridium difficile ATCC 43255]
          Length = 1039

 Score = 40.3 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 73/251 (29%), Gaps = 27/251 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIE +GLD  N  I+E+GAV++ D+     T++  +                +    
Sbjct: 12  VFLDIEVSGLDCLNSEILEVGAVKVKDWKIY--TYESLIKNKFEVPIEVFSVCKNLDKND 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+       +     +F  +        + K      +    +     L    +I     
Sbjct: 70  LEIANEIELVEDRLVNFVEDSFIICHDLSLKKKFLEYHMPKLKNKFIDLIELAVILEPYH 129

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT-- 187
                   +N L +   +        +     + + LL             ++F   +  
Sbjct: 130 KDYSLEYLKNTLTNCNSKVENRALSDAIDIINIVNCLLVKFNNYEKTTLEPLSFKINSYL 189

Query: 188 --------------------NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
                                 +    +++  + +    K+ +    +I  EE   +++ 
Sbjct: 190 KKFNLPTWEWSKFLEEANYDLSNNINIKKEYNIFDSKEEKKKERETLKILNEEEKNYEEL 249

Query: 228 IQTLGKNAIWD 238
           ++      IW+
Sbjct: 250 LKY---KTIWE 257


>gi|325921805|ref|ZP_08183622.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas gardneri
          ATCC 19865]
 gi|325547682|gb|EGD18719.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas gardneri
          ATCC 19865]
          Length = 212

 Score = 40.3 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIG 30
          R I  D+E TGLD+  D IIEI 
Sbjct: 28 RLIWIDLEMTGLDTDRDSIIEIA 50


>gi|74152556|dbj|BAE42568.1| unnamed protein product [Mus musculus]
          Length = 224

 Score = 40.3 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 20 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 53


>gi|94311510|ref|YP_584720.1| oligoribonuclease [Cupriavidus metallidurans CH34]
 gi|93355362|gb|ABF09451.1| oligoribonuclease [Cupriavidus metallidurans CH34]
          Length = 205

 Score = 40.3 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL    DRIIE+  V
Sbjct: 18 LDMEMTGLQPDTDRIIEVAVV 38


>gi|149578823|ref|XP_001514027.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus
          anatinus]
          Length = 350

 Score = 40.3 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 34 MAAGESMGQRMVWVDLEMTGLDIEKDQIIEMACL 67


>gi|92113396|ref|YP_573324.1| oligoribonuclease [Chromohalobacter salexigens DSM 3043]
 gi|91796486|gb|ABE58625.1| Exonuclease [Chromohalobacter salexigens DSM 3043]
          Length = 187

 Score = 40.3 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37
           D+E TGLD + +RIIE+  +   + 
Sbjct: 17 IDLEMTGLDPQRERIIEVATLITDND 42


>gi|58581832|ref|YP_200848.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623734|ref|YP_451106.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576613|ref|YP_001913542.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|81311869|sp|Q5H0Q8|ORN_XANOR RecName: Full=Oligoribonuclease
 gi|123522125|sp|Q2P3P5|ORN_XANOM RecName: Full=Oligoribonuclease
 gi|58426426|gb|AAW75463.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367674|dbj|BAE68832.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521065|gb|ACD59010.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 194

 Score = 40.3 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIG 30
          R I  D+E TGLD+  D IIEI 
Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32


>gi|45476845|sp|Q7TMF2|ERI1_MOUSE RecName: Full=3'-5' exoribonuclease 1; AltName: Full=3'-5'
           exonuclease ERI1; AltName: Full=Eri-1 homolog; AltName:
           Full=Histone mRNA 3'-exonuclease 1
 gi|28204890|gb|AAH46412.1| Exoribonuclease 1 [Mus musculus]
 gi|74179153|dbj|BAE42771.1| unnamed protein product [Mus musculus]
 gi|148703505|gb|EDL35452.1| three prime histone mRNA exonuclease 1 [Mus musculus]
          Length = 345

 Score = 40.3 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T   G  ++    IIE   V L  ++ +   TFQ ++ P      S   + L G
Sbjct: 128 IIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNAQLSEFCIGLTG 187

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +  +  ++                  + +    +       +  + 
Sbjct: 188 ITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLSRLKHP 247

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++M+
Sbjct: 248 AFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAVRML 306

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 307 QDGCELRIN 315


>gi|256832144|ref|YP_003160871.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans
          DSM 20603]
 gi|256685675|gb|ACV08568.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans
          DSM 20603]
          Length = 222

 Score = 40.3 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 10 IV-FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51
          IV  D E TGLD   D +IEI A+    + +  +    + + P 
Sbjct: 10 IVWIDCEMTGLDITQDALIEIAAIVTDSELNPLDEGIDLVIKPP 53


>gi|163749340|ref|ZP_02156589.1| oligoribonuclease [Shewanella benthica KT99]
 gi|161331059|gb|EDQ01985.1| oligoribonuclease [Shewanella benthica KT99]
          Length = 181

 Score = 40.3 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + D++IEI 
Sbjct: 11 VDLEMTGLDPETDKVIEIA 29


>gi|126172800|ref|YP_001048949.1| oligoribonuclease [Shewanella baltica OS155]
 gi|153002280|ref|YP_001367961.1| oligoribonuclease [Shewanella baltica OS185]
 gi|160877004|ref|YP_001556320.1| oligoribonuclease [Shewanella baltica OS195]
 gi|304410908|ref|ZP_07392525.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
          OS183]
 gi|307304921|ref|ZP_07584671.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
          BA175]
 gi|166216585|sp|A3D017|ORN_SHEB5 RecName: Full=Oligoribonuclease
 gi|166216586|sp|A6WSV9|ORN_SHEB8 RecName: Full=Oligoribonuclease
 gi|125996005|gb|ABN60080.1| Exonuclease, RNase T and DNA polymerase III [Shewanella baltica
          OS155]
 gi|151366898|gb|ABS09898.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
          OS185]
 gi|160862526|gb|ABX51060.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
          OS195]
 gi|304350805|gb|EFM15206.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
          OS183]
 gi|306912323|gb|EFN42747.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
          BA175]
 gi|315269207|gb|ADT96060.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
          OS678]
          Length = 181

 Score = 40.3 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+   DRIIEI 
Sbjct: 11 IDLEMTGLEPDVDRIIEIA 29


>gi|213162324|ref|ZP_03348034.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica
          serovar Typhi str. E00-7866]
          Length = 73

 Score = 40.3 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 5/74 (6%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
          + D ET GL      I+EI +V+++D +         + P+ R  +P+A+ +H IT+  +
Sbjct: 4  IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58

Query: 71 KDKPSFSSIFSEFW 84
           DKP    +   ++
Sbjct: 59 ADKPWIEDVIPLYY 72


>gi|217974867|ref|YP_002359618.1| oligoribonuclease [Shewanella baltica OS223]
 gi|217500002|gb|ACK48195.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
          OS223]
          Length = 181

 Score = 40.3 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+   DRIIEI 
Sbjct: 11 IDLEMTGLEPDVDRIIEIA 29


>gi|260437597|ref|ZP_05791413.1| exonuclease family protein [Butyrivibrio crossotus DSM 2876]
 gi|292809950|gb|EFF69155.1| exonuclease family protein [Butyrivibrio crossotus DSM 2876]
          Length = 327

 Score = 39.9 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 52/184 (28%), Gaps = 21/184 (11%)

Query: 7   MRKIVFDIETTGLDSKND-------------RIIEIGAVELLDYSKTNRTFQVFLCPNGR 53
           M  IVFD+E                       IIEIGAV+L    +   TF   + P   
Sbjct: 1   MNYIVFDLE-----WNQCPDGKEKEIKDMPFEIIEIGAVKLDSQRRVIDTFAKNIAPGVY 55

Query: 54  K--NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAEL 110
           +  +      +     E ++    F     EF ++  +             ++       
Sbjct: 56  QTLHPVMQDLIGTTMGELVEKGVPFPQAVKEFMEWCGDDYIFCTWGCMDLTELQRNCDYY 115

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +     P+         S +       +             + + + H A  D+   + +
Sbjct: 116 KINLNLPMPLIYYDLQKSYSICYDDGKKRSSLETVTADKNIVQNEAFHSAFADAEYTAKI 175

Query: 171 YIKM 174
           +  M
Sbjct: 176 FGLM 179


>gi|239621759|ref|ZP_04664790.1| conserved hypothetical protein [Bifidobacterium longum subsp.
          infantis CCUG 52486]
 gi|239514950|gb|EEQ54817.1| conserved hypothetical protein [Bifidobacterium longum subsp.
          infantis CCUG 52486]
          Length = 189

 Score = 39.9 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 12 FDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           DIETTG D ++D ++EIG     +   ++  R ++  + P+           H + 
Sbjct: 11 VDIETTGTDPRHDLMLEIGLRCTSMDAKTEYAR-YESIIKPDILPTDRSFAYAHRMH 66


>gi|119486052|ref|ZP_01620114.1| Exonuclease [Lyngbya sp. PCC 8106]
 gi|119456827|gb|EAW37955.1| Exonuclease [Lyngbya sp. PCC 8106]
          Length = 191

 Score = 39.9 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 58/178 (32%), Gaps = 9/178 (5%)

Query: 11  VFDIETTGLDSKN-----DRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKN-SPEALKLH 63
           + D+E T  D          IIEIGAV +     T+   FQ F+ P      +    +L 
Sbjct: 11  IIDLEATCCDQHTILRSEMEIIEIGAVMVETKKLTSVNEFQTFIKPIRHPILTKFCQQLT 70

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINKDPLDPS 121
            IT   ++  P +        ++ ++ +   +   +   +D    + + Q  +       
Sbjct: 71  SITQAQVEQAPHYPEAIKNLKNWLSQYSDSHLIWGSWGDYDRRQFDQDSQFHHVSFPIGY 130

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             I+   +             +   +        + H  + D+  ++ +   ++    
Sbjct: 131 PHINLKKMFSTSQGLKGRYGMADALKLANIPLEGTHHRGIDDTRNIAKLMPYILGVKK 188


>gi|90407113|ref|ZP_01215302.1| oligoribonuclease [Psychromonas sp. CNPT3]
 gi|90311835|gb|EAS39931.1| oligoribonuclease [Psychromonas sp. CNPT3]
          Length = 179

 Score = 39.9 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 5  NKMRKIVFDIETTGLDSKNDRIIEIG 30
          NK   I  D+E TGL+ + D IIEI 
Sbjct: 2  NKNNLIWIDLEMTGLNPETDLIIEIA 27


>gi|88704503|ref|ZP_01102217.1| oligoribonuclease [Congregibacter litoralis KT71]
 gi|88701554|gb|EAQ98659.1| oligoribonuclease [Congregibacter litoralis KT71]
          Length = 188

 Score = 39.9 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD   DR+IEI 
Sbjct: 14 VDMEMTGLDPDGDRVIEIA 32


>gi|323486817|ref|ZP_08092135.1| exonuclease [Clostridium symbiosum WAL-14163]
 gi|323694961|ref|ZP_08109111.1| hypothetical protein HMPREF9475_03975 [Clostridium symbiosum
           WAL-14673]
 gi|323399830|gb|EGA92210.1| exonuclease [Clostridium symbiosum WAL-14163]
 gi|323501051|gb|EGB16963.1| hypothetical protein HMPREF9475_03975 [Clostridium symbiosum
           WAL-14673]
          Length = 335

 Score = 39.9 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 50/176 (28%), Gaps = 10/176 (5%)

Query: 9   KIVFDIETT----GLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            IV D+E      G D   DR    IIEIGAV+L    +    F+  + P   +     +
Sbjct: 4   YIVLDLEWNQSPLGKDGSMDRLPFEIIEIGAVKLNASLQIISEFRRLIRPRVYRQMHFKI 63

Query: 61  KLHGITDEF--LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                        +   F     EF  +  +        +        N     ++    
Sbjct: 64  SEVTHMSMDELNMEGEEFGKAMEEFLAWCGDDYKFCTWGSMDLTELQRNMVYHGLDIPFR 123

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            P    D   I        + D              R  H AL D++    +  +M
Sbjct: 124 MPLLYYDLQKIYGLIRGDKQKDSLDTVVEELGIAEDRPFHRALDDAYYTGRIMAEM 179


>gi|207725335|ref|YP_002255731.1| oligoribonuclease protein [Ralstonia solanacearum MolK2]
 gi|206590571|emb|CAQ37533.1| oligoribonuclease protein [Ralstonia solanacearum MolK2]
          Length = 185

 Score = 39.9 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 15 ETTGLDSKNDRIIEIGAV 32
          E TGL  +NDRIIE+  V
Sbjct: 2  EMTGLSPENDRIIEVAMV 19


>gi|72162668|ref|YP_290325.1| oligoribonuclease [Thermobifida fusca YX]
 gi|71916400|gb|AAZ56302.1| exonuclease [Thermobifida fusca YX]
          Length = 213

 Score = 39.9 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 39/149 (26%), Gaps = 12/149 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEALKLHGITD-- 67
            D E TGLD K D +IE+  + + D      +    V + P           +  +    
Sbjct: 8   IDCEMTGLDLKKDALIEVACL-ITDGELNQLDEGINVVIKPPQEALDQMGEFVTQMHTTS 66

Query: 68  -------EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                    +    +   +      +  E     +  N+        A       + L  
Sbjct: 67  GLLAELENGVTLAEAEQLVLDHIRRYIPEPKKVPLCGNSIATDRAFLARDMPRVDEHLHY 126

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
             +  +      +    R    S  K  G
Sbjct: 127 RMVDVSSVKELLRRWYPRVYFASPEKHGG 155


>gi|149716526|ref|XP_001502237.1| PREDICTED: similar to Oligoribonuclease, mitochondrial precursor
          (Small fragment nuclease) (RNA exonuclease 2 homolog)
          [Equus caballus]
          Length = 237

 Score = 39.9 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|119920012|ref|XP_001253741.1| PREDICTED: three prime histone mRNA exonuclease 1-like [Bos taurus]
 gi|297492734|ref|XP_002699843.1| PREDICTED: three prime histone mRNA exonuclease 1-like [Bos taurus]
 gi|296471031|gb|DAA13146.1| three prime histone mRNA exonuclease 1-like [Bos taurus]
          Length = 370

 Score = 39.9 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T   G   +    IIE   V L  ++ +   TFQ ++ P      S   + L G
Sbjct: 132 IIDFEATCEEGNPPEFIHEIIEFSVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINLTG 191

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +  +  D+   +              + +    +       +    
Sbjct: 192 ITQDQVDKADTFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRLKYP 251

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G+       H  L DS  ++ + ++M+
Sbjct: 252 PFAKKWISIQKSYGNFYKVPRSQIKLTIMLEKLGMDYDGWP-HSGLDDSKNVARIAVRML 310

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 311 QDGCELRVN 319


>gi|332536010|ref|ZP_08411688.1| oligoribonuclease [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034620|gb|EGI71185.1| oligoribonuclease [Pseudoalteromonas haloplanktis ANT/505]
          Length = 181

 Score = 39.9 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +  NK   I  D+E TGL+ + D+I+EI  V
Sbjct: 1  MTINKSNLIWLDLEMTGLEPETDKILEIATV 31


>gi|320586054|gb|EFW98733.1| RNA exonuclease [Grosmannia clavigera kw1407]
          Length = 205

 Score = 39.9 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37
           D E TGLD  +D+I+EI  +    +
Sbjct: 11 IDCEMTGLDPDSDQILEIYCLVTDGH 36


>gi|295401361|ref|ZP_06811332.1| Exonuclease RNase T and DNA polymerase III [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109679|ref|YP_003987995.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y4.1MC1]
 gi|294976576|gb|EFG52183.1| Exonuclease RNase T and DNA polymerase III [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311214780|gb|ADP73384.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y4.1MC1]
          Length = 207

 Score = 39.9 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 48/169 (28%), Gaps = 10/169 (5%)

Query: 9   KIVFDIE-T---TGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +  D E T   T ++ K     IIE+G V +++    ++ F  ++ P      P     
Sbjct: 7   YLFLDFEFTMPETKMEPKGFFPEIIEVGLVVVVNDEICDQ-FSSYVKPTRF---PVLTNR 62

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                   +++ +    F E      + +    +    +    +    +      L    
Sbjct: 63  CKSFLNITQEQINQGMSFHELVALLCKYDRSCPSTVVTWGSMDMKVLKENCKAANLPFPF 122

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +   +A        N  ++  ++      +     A          Y
Sbjct: 123 TGEHRDLAMEYKLFFGNKNHTGLRKAIQEYGNEGVGKAHCALDDAFTTY 171


>gi|21684668|gb|AAM09079.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps]
          Length = 157

 Score = 39.9 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 1/146 (0%)

Query: 37  YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
              T   F  ++ P  +  +  A  +HG+ DEFL  +P+F +I      F          
Sbjct: 4   GRITGNYFHAYINP-LQSMTRGAQAVHGLRDEFLATQPTFCAIAQGLLFFLCRSTLVGHN 62

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
            +   +                    +IDT+    ++    R  L+S C   G+    R+
Sbjct: 63  LSFDLNFLDAGLASAGFMPTARYCHGVIDTMPHLAQRGSRRRFSLDSCCDMLGVRREDRA 122

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQIN 182
           +HGAL D+ LL++ ++        I 
Sbjct: 123 RHGALEDAVLLAEAFVVAKRTQPPIG 148


>gi|104773741|ref|YP_618721.1| putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|116513740|ref|YP_812646.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|300813077|ref|ZP_07093455.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|313123346|ref|YP_004033605.1| DNA polymerase iii, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|103422822|emb|CAI97474.1| Putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|116093055|gb|ABJ58208.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|300495918|gb|EFK31062.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|312279909|gb|ADQ60628.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|325125397|gb|ADY84727.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
 gi|325684506|gb|EGD26670.1| exonuclease [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 178

 Score = 39.9 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 51/163 (31%), Gaps = 9/163 (5%)

Query: 6   KMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            M  +  D ET    +         +  V + +    +R F   + P       + +K+H
Sbjct: 1   MMNFVAMDFET----ANQHPASACSLALVLVRESKIIDR-FYTVINPQMA-FDAQQVKVH 54

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            IT E +   P+  +          +      AHNA+FD   +   L R          +
Sbjct: 55  DITAEDVAGAPT-MAEVWPKIQPLFQPGMLVAAHNARFDCNVMKQSLARYGIAEPHYLVL 113

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
                    +       LN++    G+ + H     +  ++  
Sbjct: 114 DSLKVSRELEPGLDNYQLNTVSDLLGVELWHHHNALSDSEACA 156


>gi|297571869|ref|YP_003697643.1| exonuclease RNase T and DNA polymerase III [Arcanobacterium
          haemolyticum DSM 20595]
 gi|296932216|gb|ADH93024.1| Exonuclease RNase T and DNA polymerase III [Arcanobacterium
          haemolyticum DSM 20595]
          Length = 228

 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 10 IV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44
          IV FD ETTG+D   +R++    V + +   T   +
Sbjct: 7  IVGFDTETTGVDPTRERLVTASVVVVEEDGVTRHYW 42


>gi|260783156|ref|XP_002586643.1| hypothetical protein BRAFLDRAFT_105672 [Branchiostoma floridae]
 gi|229271764|gb|EEN42654.1| hypothetical protein BRAFLDRAFT_105672 [Branchiostoma floridae]
          Length = 767

 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/210 (10%), Positives = 54/210 (25%), Gaps = 15/210 (7%)

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
                     K   +   F+ +K    + F     + +     +    ++ +   +   L
Sbjct: 437 ENEYVHTPDEKYDALMHHFVYNKTWLLTKFPSETKYISIIRHPFGHLKSQMNYFTLAKVL 496

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +           + D      R      +   +                   D    +  
Sbjct: 497 KIKGHGNAVKVFLHDPWQHRNRSETFFPHVNITWDGTRNPMTFDMGWPAERADEEEEARE 556

Query: 171 YIKMMVGGSQINFGFKTNEDRFFK------EEKKTVPNISLLKRDKPLFTR---ITKEEL 221
           YI  +     +    +  ++             + +   S +K  +P   +    T EEL
Sbjct: 557 YISQLDAEFTLVMILEHLDESVVLLRRLMCWGLRDILLYSKVKNSRPYPYKNYVATPEEL 616

Query: 222 DEHDKT--IQTLG----KNAIWDRYISSNQ 245
           + H     +  +      N++W +  +  Q
Sbjct: 617 ENHRNWSAVDYMLYNTFNNSLWRKINAQGQ 646


>gi|283769033|ref|ZP_06341939.1| exonuclease [Bulleidia extructa W1219]
 gi|283104390|gb|EFC05767.1| exonuclease [Bulleidia extructa W1219]
          Length = 186

 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 44/159 (27%), Gaps = 3/159 (1%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D+ET   D ++  +  IG   L +       F   + P    N  E         
Sbjct: 3   RVVAVDVETASSDHRS--MCAIGLSVLENGVL-EEAFYSLIKPAANANHFEYFNTKVHGI 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                + + +            ++   +AHNA FDV  I              +      
Sbjct: 60  HPKDVQDAPTLPEVYPTIKSLLESGIVVAHNAVFDVSVIKNCCLNTGCPVPKVTYFDSVP 119

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
              R       + L+++ +   I + H            
Sbjct: 120 LSRRAFPLLVNHKLDTVARYLKIPLDHHHAGSDAYACLA 158


>gi|259502770|ref|ZP_05745672.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           antri DSM 16041]
 gi|259169273|gb|EEW53768.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           antri DSM 16041]
          Length = 178

 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 7/166 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     K      +    + +       F   + P         +++HGI 
Sbjct: 1   MNFIAMDFET--ASGKRYSACSLALTIVRNNQ-IADEFYTLINPQTPFF-WRNVQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + + P+F     E    F   +   IAHN +FD G + + L+    +P     +   
Sbjct: 57  ERDVANAPTF-PEVWEHIKGFYTPDKLVIAHNNRFDNGVLKSTLEHYGIEPPAYQTLDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +S  R     S   LN++C    I + H   H AL D+   +++ +
Sbjct: 116 VSSRRLLPGLSNYKLNTVCAALNIDLHH--HHNALDDAQACANILL 159


>gi|146281584|ref|YP_001171737.1| ribonuclease T [Pseudomonas stutzeri A1501]
 gi|145569789|gb|ABP78895.1| ribonuclease T [Pseudomonas stutzeri A1501]
          Length = 203

 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 59/186 (31%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP---NGRKNSPEALKL 62
           +V D+E  G +   D ++EI AV +            T    + P      + +      
Sbjct: 11  VVIDVECGGFNCATDALLEIAAVTIGMDEQGLLYPQDTLFYRVEPFAGANIEPAALEFTG 70

Query: 63  HGITDEFLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
             +        P             +       + A  + HN+ FD+GF+NA + R    
Sbjct: 71  IKLDHPLRMAVPEQQALTDIFRSVRKAVKSAGCKRAILVGHNSSFDLGFLNAAIARCEIK 130

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    R  H A  D+   ++++  ++ 
Sbjct: 131 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 190

Query: 177 GGSQIN 182
              ++ 
Sbjct: 191 RWKEMG 196


>gi|84488969|ref|YP_447201.1| 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091]
 gi|84372288|gb|ABC56558.1| predicted 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091]
          Length = 445

 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 11/121 (9%)

Query: 7   MR-KIVFDIETTGLDS--KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           MR  +V D+E    +   + + I  IG + + + +   R +   + P         +++ 
Sbjct: 1   MRDYVVMDLE----NPNFRQNSICAIGVMLIRNNNVVERKY-SLINPED-TFDNINIQIT 54

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I    +K  P+    +SE   +    N   + HN  +D+  +   LQR + +  + +  
Sbjct: 55  KIAPHMIKQSPTLPEYWSEISSWL--SNNVIVGHNITYDLRVLTKSLQRYDLEVPEFNYC 112

Query: 124 I 124
            
Sbjct: 113 C 113


>gi|77359452|ref|YP_339027.1| oligoribonuclease [Pseudoalteromonas haloplanktis TAC125]
 gi|123587965|sp|Q3IG97|ORN_PSEHT RecName: Full=Oligoribonuclease
 gi|76874363|emb|CAI85584.1| oligoribonuclease [Pseudoalteromonas haloplanktis TAC125]
          Length = 181

 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +  NK   I  D+E TGL+ + D+I+EI  V
Sbjct: 1  MNINKSNLIWLDLEMTGLEPETDKILEIATV 31


>gi|37200012|dbj|BAC95841.1| oligoribonuclease [Vibrio vulnificus YJ016]
          Length = 227

 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD    +IIEI ++
Sbjct: 57 IDLEMTGLDPDVHKIIEIASI 77


>gi|120597485|ref|YP_962059.1| oligoribonuclease [Shewanella sp. W3-18-1]
 gi|146294374|ref|YP_001184798.1| oligoribonuclease [Shewanella putrefaciens CN-32]
 gi|166216588|sp|A4YAL6|ORN_SHEPC RecName: Full=Oligoribonuclease
 gi|166216590|sp|A1RFR0|ORN_SHESW RecName: Full=Oligoribonuclease
 gi|120557578|gb|ABM23505.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp.
          W3-18-1]
 gi|145566064|gb|ABP76999.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
          putrefaciens CN-32]
 gi|319427729|gb|ADV55803.1| Exonuclease RNase T and DNA polymerase III [Shewanella
          putrefaciens 200]
          Length = 181

 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+   DRIIEI 
Sbjct: 11 IDLEMTGLEPDVDRIIEIA 29


>gi|161484692|ref|NP_779012.2| exonuclease I [Xylella fastidiosa Temecula1]
 gi|182681388|ref|YP_001829548.1| exonuclease I [Xylella fastidiosa M23]
 gi|182631498|gb|ACB92274.1| Exodeoxyribonuclease I [Xylella fastidiosa M23]
 gi|307579833|gb|ADN63802.1| exonuclease I [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 478

 Score = 39.9 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 41/154 (26%), Gaps = 4/154 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGIT 66
            + +D+ET G D +  RI +  AV      +         + P       P A  + GIT
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGIT 64

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +  + +    +           Q            + F +  ++             + 
Sbjct: 65  PQHAQREGINEAAAFAHIAMQMTQPHTCSL--GYNTLRFDDEFIRYGLFRHFYDPYEREW 122

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
            +   R        L    +  GI    R     
Sbjct: 123 RNGNSRWDLLDMLRLMHAVRPEGIHWPTREDGAP 156


>gi|227497246|ref|ZP_03927486.1| DNA polymerase III subunit epsilon [Actinomyces urogenitalis DSM
          15434]
 gi|226833294|gb|EEH65677.1| DNA polymerase III subunit epsilon [Actinomyces urogenitalis DSM
          15434]
          Length = 249

 Score = 39.9 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
          FD ETTG+D   DR++    V
Sbjct: 20 FDTETTGVDPSQDRLVTAALV 40


>gi|113461243|ref|YP_719312.1| oligoribonuclease [Haemophilus somnus 129PT]
 gi|112823286|gb|ABI25375.1| oligoribonuclease [Haemophilus somnus 129PT]
          Length = 184

 Score = 39.9 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          ++ +K   I  D+E TGLD   +RIIEI 
Sbjct: 1  MQLDKQNLIWIDLEMTGLDPDKERIIEIA 29


>gi|295095557|emb|CBK84647.1| Exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 220

 Score = 39.9 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 17/167 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET  L      I+E+ +V+++D           + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCDL---QGGIVEVASVDVIDGKIV-NPMSHLVRPD-RPISAQAMAIHRITESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I           +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPWIEEII-----PLYHGSQWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 S   L    K    T      H AL D ++ + + I +M  
Sbjct: 107 WPGIKYSNMALYKSRKLSVRTPEGLHHHRALYDCYITAALLIDIMNT 153


>gi|157963361|ref|YP_001503395.1| oligoribonuclease [Shewanella pealeana ATCC 700345]
 gi|157848361|gb|ABV88860.1| Exonuclease RNase T and DNA polymerase III [Shewanella pealeana
          ATCC 700345]
          Length = 181

 Score = 39.9 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+   DRIIEI 
Sbjct: 11 VDLEMTGLEPDVDRIIEIA 29


>gi|238020295|ref|ZP_04600721.1| hypothetical protein GCWU000324_00173 [Kingella oralis ATCC
          51147]
 gi|237867275|gb|EEP68281.1| hypothetical protein GCWU000324_00173 [Kingella oralis ATCC
          51147]
          Length = 192

 Score = 39.9 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ + D+IIE+  +
Sbjct: 10 LDMEMTGLNPETDKIIEVAMI 30


>gi|257066416|ref|YP_003152672.1| exonuclease-like protein [Anaerococcus prevotii DSM 20548]
 gi|256798296|gb|ACV28951.1| exonuclease-like protein [Anaerococcus prevotii DSM 20548]
          Length = 301

 Score = 39.9 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYS 38
          +I+ DIETTGLDS  D ++ +G +E +D  
Sbjct: 17 EIILDIETTGLDSSIDSLVLLGIIEKIDGK 46


>gi|170717217|ref|YP_001784337.1| oligoribonuclease [Haemophilus somnus 2336]
 gi|168825346|gb|ACA30717.1| Exonuclease RNase T and DNA polymerase III [Haemophilus somnus
          2336]
          Length = 184

 Score = 39.9 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          ++ +K   I  D+E TGLD   +RIIEI 
Sbjct: 1  MQLDKQNLIWIDLEMTGLDPDKERIIEIA 29


>gi|291383854|ref|XP_002708465.1| PREDICTED: small fragment nuclease [Oryctolagus cuniculus]
          Length = 237

 Score = 39.9 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|218461184|ref|ZP_03501275.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli Kim 5]
          Length = 240

 Score = 39.9 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 5/149 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D ET   + +      +G   + +     R  +  + P   + S   + +HGI  
Sbjct: 46  KTIAIDFET--ANEQRGSACSVGLAWIEEGRVI-RVEERLIRPREMRFSGMNIAIHGIRP 102

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++D P F  +  EF D F        AHNA FD     A L    +   + + +    
Sbjct: 103 EDVEDAPEFPEVMDEFHDDFRGATMI--AHNAAFDFSVWRASLDLYRQSYPELTYLCSLK 160

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRS 156
              R       + LN + +  G+   H +
Sbjct: 161 MAQRIWPHFLSHRLNLIAEHLGLRFMHHN 189


>gi|194476704|ref|YP_002048883.1| possible DNA polymerase III, epsilon subunit [Paulinella
           chromatophora]
 gi|171191711|gb|ACB42673.1| possible DNA polymerase III, epsilon subunit [Paulinella
           chromatophora]
          Length = 302

 Score = 39.9 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDY 37
           + ++ D ETT L   +   IEIGA+     
Sbjct: 77  KLLILDTETTSLSPTDGNCIEIGAILFHLR 106


>gi|146278808|ref|YP_001168967.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025]
 gi|145557049|gb|ABP71662.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025]
          Length = 204

 Score = 39.9 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 8  RKIVFDIETTGLDSKNDR--IIEIGA 31
          R +  D ET GLD + DR  ++++ A
Sbjct: 18 RVVAIDTETMGLDPRRDRLCVVQLSA 43


>gi|325266418|ref|ZP_08133095.1| oligoribonuclease [Kingella denitrificans ATCC 33394]
 gi|324981861|gb|EGC17496.1| oligoribonuclease [Kingella denitrificans ATCC 33394]
          Length = 182

 Score = 39.9 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+  +D+IIEI  +
Sbjct: 10 LDMEMTGLNPDSDKIIEIAMI 30


>gi|313773620|gb|EFS39586.1| exonuclease [Propionibacterium acnes HL074PA1]
 gi|313793857|gb|EFS41881.1| exonuclease [Propionibacterium acnes HL110PA1]
 gi|313801249|gb|EFS42500.1| exonuclease [Propionibacterium acnes HL110PA2]
 gi|313811456|gb|EFS49170.1| exonuclease [Propionibacterium acnes HL083PA1]
 gi|313831196|gb|EFS68910.1| exonuclease [Propionibacterium acnes HL007PA1]
 gi|313834219|gb|EFS71933.1| exonuclease [Propionibacterium acnes HL056PA1]
 gi|313840029|gb|EFS77743.1| exonuclease [Propionibacterium acnes HL086PA1]
 gi|314963788|gb|EFT07888.1| exonuclease [Propionibacterium acnes HL082PA1]
 gi|314974073|gb|EFT18169.1| exonuclease [Propionibacterium acnes HL053PA1]
 gi|314976638|gb|EFT20733.1| exonuclease [Propionibacterium acnes HL045PA1]
 gi|314984301|gb|EFT28393.1| exonuclease [Propionibacterium acnes HL005PA1]
 gi|315079637|gb|EFT51630.1| exonuclease [Propionibacterium acnes HL053PA2]
 gi|315081132|gb|EFT53108.1| exonuclease [Propionibacterium acnes HL078PA1]
 gi|315095417|gb|EFT67393.1| exonuclease [Propionibacterium acnes HL038PA1]
 gi|327328524|gb|EGE70286.1| oligoribonuclease [Propionibacterium acnes HL096PA2]
 gi|327444311|gb|EGE90965.1| exonuclease [Propionibacterium acnes HL043PA2]
 gi|327444807|gb|EGE91461.1| exonuclease [Propionibacterium acnes HL043PA1]
 gi|327452117|gb|EGE98771.1| exonuclease [Propionibacterium acnes HL092PA1]
 gi|328759959|gb|EGF73543.1| oligoribonuclease [Propionibacterium acnes HL099PA1]
          Length = 202

 Score = 39.9 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD  +D +IE+ A+              V + P  +        +  + 
Sbjct: 5  IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMH 60


>gi|303232128|ref|ZP_07318831.1| exonuclease [Veillonella atypica ACS-049-V-Sch6]
 gi|302513234|gb|EFL55273.1| exonuclease [Veillonella atypica ACS-049-V-Sch6]
          Length = 327

 Score = 39.9 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 25/187 (13%)

Query: 7   MRKIVFDIE------------------TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           M  I+FD+E                   TG       II+IGA++L +  +   +F +++
Sbjct: 1   MDYIIFDLEWNQPYSNDISFMKRARMPLTG------EIIQIGAIKLNENLEIVDSFTMYV 54

Query: 49  CPNGRKNSPEALKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            P    +  + +K   GIT++ L     F   +S F  +  +             +   N
Sbjct: 55  KPKYLPHMHKHVKALTGITNQDLNRGVPFRVAYSHFQQWCGKDYMLLSWGADDILILREN 114

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             L ++     D       L   +R   + +  +    +   I+    S H AL D+   
Sbjct: 115 LLLHKLKSIDYDSWADAQMLYSYQRYGTTQQYSVAHAMEDLHISSEELSAHNALHDAIFT 174

Query: 168 SDVYIKM 174
           + +  K+
Sbjct: 175 AHICQKL 181


>gi|295394431|ref|ZP_06804655.1| oligoribonuclease [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972783|gb|EFG48634.1| oligoribonuclease [Brevibacterium mcbrellneri ATCC 49030]
          Length = 200

 Score = 39.9 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 10 IV-FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          IV  D E TGL+ + D +IE+ A+    D +  +    V + P+ R        +  + 
Sbjct: 6  IVWIDCEMTGLELEVDELIEVAAIVTDFDLNPVDEGVDVIIKPSQRARENMNDFVTNMH 64


>gi|212633655|ref|YP_002310180.1| oligoribonuclease [Shewanella piezotolerans WP3]
 gi|212555139|gb|ACJ27593.1| Exonuclease [Shewanella piezotolerans WP3]
          Length = 181

 Score = 39.9 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+   DRIIEI 
Sbjct: 11 VDLEMTGLEPAVDRIIEIA 29


>gi|150389968|ref|YP_001320017.1| exonuclease-like protein [Alkaliphilus metalliredigens QYMF]
 gi|149949830|gb|ABR48358.1| exonuclease-like protein [Alkaliphilus metalliredigens QYMF]
          Length = 342

 Score = 39.9 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44
          MI  ++ +  + DIETTGL      +I IG +  +D     + F
Sbjct: 20 MILNSQ-KYCIVDIETTGLSKIYHHVILIGILYPVDDHLVLKQF 62


>gi|332974570|gb|EGK11490.1| oligoribonuclease [Kingella kingae ATCC 23330]
          Length = 182

 Score = 39.9 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 45/179 (25%), Gaps = 9/179 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
            D+E TGL+   D+IIEI  +       T++   V    P    +  + +          
Sbjct: 10  LDMEMTGLNPDTDKIIEIAMI------ITDKHLNVLAQSPVYAIHQSDEIMNGMDEWCTT 63

Query: 71  KDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               +     +    W     ++                     I++D     R +  L 
Sbjct: 64  THARTGLTQRVKESTWTEAQVESELLAWMQQWLPANTTPMCGNTIHQDRRFMVRHMPRLE 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                     + L  L KR+   +           +       I+ +            
Sbjct: 124 AFFHYRNLDVSTLKELAKRWNPAVYKGIVKKGSHQALDDILESIEELRYYRATFLRVDE 182


>gi|309812148|ref|ZP_07705906.1| oligoribonuclease [Dermacoccus sp. Ellin185]
 gi|308433835|gb|EFP57709.1| oligoribonuclease [Dermacoccus sp. Ellin185]
          Length = 209

 Score = 39.9 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG 52
          R +  D E TGLD +ND +IE+ A V   + ++      V + P  
Sbjct: 14 RIVWIDCEMTGLDLENDALIEVAALVTDFELNQLGDGVDVVIKPEP 59


>gi|289428666|ref|ZP_06430349.1| exonuclease [Propionibacterium acnes J165]
 gi|289158064|gb|EFD06284.1| exonuclease [Propionibacterium acnes J165]
          Length = 223

 Score = 39.9 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD  +D +IE+ A+              V + P  +        +  + 
Sbjct: 26 IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMH 81


>gi|188533646|ref|YP_001907443.1| exodeoxyribonuclease X [Erwinia tasmaniensis Et1/99]
 gi|188028688|emb|CAO96550.1| DNA exonuclease X [Erwinia tasmaniensis Et1/99]
          Length = 221

 Score = 39.9 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 20/174 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+E+ +V++++           + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGL---QGGIVEVASVDVINGQ-IANPMSDLISPD-RPISRQAMDVHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP+       +       +  ++AHNA FD   +                 I T+++A
Sbjct: 59  RGKPTIEQAIGRYH-----GSPYYVAHNASFDRRMLPE----------MNGEWICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           RR  P  +    +L +   + +S   +  A    +        ++   +   + 
Sbjct: 104 RRLWPGLKYGNEALRQALRLDVSPPPELHAHRALYDCYVTAALLVRIMTFSGWD 157


>gi|34497823|ref|NP_902038.1| oligoribonuclease [Chromobacterium violaceum ATCC 12472]
 gi|41017434|sp|Q7NVH5|ORN_CHRVO RecName: Full=Oligoribonuclease
 gi|34103679|gb|AAQ60040.1| oligoribonuclease protein [Chromobacterium violaceum ATCC 12472]
          Length = 181

 Score = 39.9 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+   DRIIE+  +
Sbjct: 11 LDMEMTGLNPDQDRIIEVAMI 31


>gi|312872015|ref|ZP_07732095.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2062A-h1]
 gi|312873705|ref|ZP_07733751.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2052A-d]
 gi|315653310|ref|ZP_07906232.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners ATCC 55195]
 gi|325911899|ref|ZP_08174303.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 143-D]
 gi|311090805|gb|EFQ49203.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2052A-d]
 gi|311092468|gb|EFQ50832.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2062A-h1]
 gi|315489235|gb|EFU78875.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners ATCC 55195]
 gi|325476405|gb|EGC79567.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 143-D]
          Length = 177

 Score = 39.9 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 60/167 (35%), Gaps = 7/167 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET   +   D    +  V + D      +F   + P         +K+HGIT
Sbjct: 1   MNFTAMDFET--ANRHYDSACSLALVLVRDNKII-DSFYTVINPQ-MPFDKNNIKIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +KD P+             +     +AHNA+FD   +   L++ N        I   
Sbjct: 57  ANDVKDAPT-MDEVWPKIRLLFQPGMLVVAHNARFDCNVMKKSLKKYNIAEPHYLTIDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +            L+++  +  I + H   H AL DS   +++ IK
Sbjct: 116 ATSRALIPNLKNYRLDTVSNQLNIDLWH--HHNALSDSEACAEILIK 160


>gi|227832929|ref|YP_002834636.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
          ATCC 700975]
 gi|227453945|gb|ACP32698.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
          ATCC 700975]
          Length = 233

 Score = 39.9 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT 43
          R + FD+ETT +  K  RI+    V +       R 
Sbjct: 17 RMLSFDLETTSVKPKEARIVTSALVRIDGREVDKRE 52


>gi|224370128|ref|YP_002604292.1| SbcB [Desulfobacterium autotrophicum HRM2]
 gi|223692845|gb|ACN16128.1| SbcB [Desulfobacterium autotrophicum HRM2]
          Length = 471

 Score = 39.9 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 2/126 (1%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+  + +DIET+GL+   D+I+   A+    +  + +RT  V    N    SP A   H 
Sbjct: 1   MKTFLFYDIETSGLNPAFDQILTFAAIRTDLELREIDRTSIVISLRNDIVPSPGAFITHR 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +T E LKD        +      N  +   I +N+              N       +  
Sbjct: 61  LTPEDLKDGLCEYQGVALIHRLLNTPDTISIGYNSLGFDDEFLRFAFYRNLLDPYTHQYA 120

Query: 125 DTLSIA 130
           +  +  
Sbjct: 121 NDCARM 126


>gi|242780586|ref|XP_002479627.1| RNA exonuclease Rex2, putative [Talaromyces stipitatus ATCC
          10500]
 gi|218719774|gb|EED19193.1| RNA exonuclease Rex2, putative [Talaromyces stipitatus ATCC
          10500]
          Length = 189

 Score = 39.9 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 12 FDIETTGLDSKNDRIIEIGA 31
           D E TGLD + D+I++I  
Sbjct: 13 VDCEMTGLDPETDQILQICC 32


>gi|212526340|ref|XP_002143327.1| RNA exonuclease Rex2, putative [Penicillium marneffei ATCC 18224]
 gi|210072725|gb|EEA26812.1| RNA exonuclease Rex2, putative [Penicillium marneffei ATCC 18224]
          Length = 189

 Score = 39.9 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 12 FDIETTGLDSKNDRIIEIGA 31
           D E TGLD + D+I++I  
Sbjct: 13 VDCEMTGLDPETDQILQICC 32


>gi|326385547|ref|ZP_08207181.1| transposase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209881|gb|EGD60664.1| transposase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 307

 Score = 39.9 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ET    ++   I +IG V   D  +    ++  + P         + +HGIT +
Sbjct: 33  FVVVDVET--ACARVSSICQIGIVGFRDGREMF-AYETLVDPRDEFAP-FNVAIHGITAD 88

Query: 69  FLKDKPSFSSIFSEFWDFF 87
            +  +P+F  I        
Sbjct: 89  RVDGEPTFDDIHGIVDAHL 107


>gi|301167118|emb|CBW26697.1| hypothetical protein BMS_1877 [Bacteriovorax marinus SJ]
          Length = 197

 Score = 39.9 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 3/91 (3%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          M+ + FDIE TGL +++D IIE G V     ++T             K          + 
Sbjct: 1  MKYLSFDIEATGL-AEDDLIIEFGMVPFC--AETGEIAHELQRNWYIKCPSFEELKPKLD 57

Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97
             +       S      +  ++       +
Sbjct: 58 QWVIDHNEELISKAHAQGEELSKFKEILTEY 88


>gi|296824674|ref|XP_002850692.1| oligoribonuclease [Arthroderma otae CBS 113480]
 gi|238838246|gb|EEQ27908.1| oligoribonuclease [Arthroderma otae CBS 113480]
          Length = 188

 Score = 39.9 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 12 FDIETTGLDSKNDRIIEIGA 31
           D E TGLD  ND+I++I  
Sbjct: 13 VDCEMTGLDPANDKILQICC 32


>gi|296139064|ref|YP_003646307.1| exonuclease RNase T and DNA polymerase III [Tsukamurella
          paurometabola DSM 20162]
 gi|296027198|gb|ADG77968.1| Exonuclease RNase T and DNA polymerase III [Tsukamurella
          paurometabola DSM 20162]
          Length = 198

 Score = 39.9 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37
           D E TGLD  +DR+IEI A+     
Sbjct: 8  VDCEMTGLDLTSDRLIEIAALVTDGD 33


>gi|255655442|ref|ZP_05400851.1| putative exonuclease [Clostridium difficile QCD-23m63]
 gi|296451434|ref|ZP_06893171.1| exonuclease superfamily protein [Clostridium difficile NAP08]
 gi|296880217|ref|ZP_06904183.1| exonuclease superfamily protein [Clostridium difficile NAP07]
 gi|296259701|gb|EFH06559.1| exonuclease superfamily protein [Clostridium difficile NAP08]
 gi|296428806|gb|EFH14687.1| exonuclease superfamily protein [Clostridium difficile NAP07]
          Length = 1039

 Score = 39.9 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
          +  DIE +GLD  N  I+E+GAV++ D+     T++  + 
Sbjct: 12 VFLDIEVSGLDCLNSEILEVGAVKVKDWKIY--TYESLIK 49


>gi|83943990|ref|ZP_00956447.1| exonuclease [Sulfitobacter sp. EE-36]
 gi|83845237|gb|EAP83117.1| exonuclease [Sulfitobacter sp. EE-36]
          Length = 188

 Score = 39.9 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 11/167 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            I  D+ET   DS +  I +IG   V   D   T   +  ++ P     +P  + LHGI 
Sbjct: 11  FIALDVETACGDSAS--ICQIGIACVGFDDSILT---WSTYVDP-LMPFAPFNVDLHGIG 64

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++   SF+ I+ + W   +         +++FD   INA  +         +     
Sbjct: 65  PETVRGAGSFAQIWPQIWPLLSRHPMV---QHSRFDEYAINAACKAQGLPRPRLTWHDSV 121

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               R       N  + L     +       H A  D+   + V ++
Sbjct: 122 TIARRAWPELKGNGGHGLANLKQVLNLDFHHHDAGEDARAAAMVVLR 168


>gi|225717126|gb|ACO14409.1| Oligoribonuclease, mitochondrial precursor [Esox lucius]
          Length = 207

 Score = 39.9 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 6  KMRKIVFDIETTGLDSKNDRIIEIGAV 32
          K R +  D+E TGLD + D+IIE+  +
Sbjct: 11 KQRMVWVDLEMTGLDIEKDQIIEMACI 37


>gi|170728503|ref|YP_001762529.1| oligoribonuclease [Shewanella woodyi ATCC 51908]
 gi|169813850|gb|ACA88434.1| Exonuclease RNase T and DNA polymerase III [Shewanella woodyi
          ATCC 51908]
          Length = 181

 Score = 39.9 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+   DRIIEI 
Sbjct: 11 VDLEMTGLEPDVDRIIEIA 29


>gi|38233700|ref|NP_939467.1| hypothetical protein DIP1110 [Corynebacterium diphtheriae NCTC
          13129]
 gi|38199961|emb|CAE49630.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 59

 Score = 39.9 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 15 ETTGLDSKNDRIIEIGAVELLDYSK 39
          ETT LD +N  I+ IG V + +   
Sbjct: 2  ETTSLDPRNGSIVAIGWVPVENGVI 26


>gi|301784463|ref|XP_002927641.1| PREDICTED: ERI1 exoribonuclease 2-like [Ailuropoda melanoleuca]
          Length = 679

 Score = 39.9 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 47/181 (25%), Gaps = 14/181 (7%)

Query: 10  IVFDIETT----GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK----NSPEAL 60
           IV D E+T    G   ++  IIE  AV L     +    F  ++ P           E  
Sbjct: 38  IVIDFESTCWNDGKRHQSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPILSEFCMELT 97

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +     +         S F ++     ++     A                +     D 
Sbjct: 98  GIKQAQVDEGVPLRICLSQFCKWIQKIQQEKKIIFATGIPDLPNAEVKLCAFVTWSDWDL 157

Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              ++      +   P   N    L   Y I             S  L +V I+ +    
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFY----GRKPKGLSGALQEVGIEFLGREH 213

Query: 180 Q 180
            
Sbjct: 214 S 214


>gi|281339701|gb|EFB15285.1| hypothetical protein PANDA_017444 [Ailuropoda melanoleuca]
          Length = 672

 Score = 39.9 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 47/181 (25%), Gaps = 14/181 (7%)

Query: 10  IVFDIETT----GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK----NSPEAL 60
           IV D E+T    G   ++  IIE  AV L     +    F  ++ P           E  
Sbjct: 31  IVIDFESTCWNDGKRHQSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPILSEFCMELT 90

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +     +         S F ++     ++     A                +     D 
Sbjct: 91  GIKQAQVDEGVPLRICLSQFCKWIQKIQQEKKIIFATGIPDLPNAEVKLCAFVTWSDWDL 150

Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              ++      +   P   N    L   Y I             S  L +V I+ +    
Sbjct: 151 GVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFY----GRKPKGLSGALQEVGIEFLGREH 206

Query: 180 Q 180
            
Sbjct: 207 S 207


>gi|254804313|ref|YP_003082534.1| oligoribonuclease [Neisseria meningitidis alpha14]
 gi|254667855|emb|CBA03898.1| oligoribonuclease [Neisseria meningitidis alpha14]
          Length = 215

 Score = 39.9 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+ + +RIIE+  +
Sbjct: 38 LDMEMTGLNPETNRIIEVAMI 58


>gi|209731072|gb|ACI66405.1| Oligoribonuclease, mitochondrial precursor [Salmo salar]
          Length = 207

 Score = 39.9 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)

Query: 7  MRK--IVFDIETTGLDSKNDRIIEIGAV 32
          MR+  +  D+E TGLD + D+IIE+  +
Sbjct: 10 MRQRMVWVDLEMTGLDIEKDQIIEMACI 37


>gi|188991408|ref|YP_001903418.1| oligoribonuclease [Xanthomonas campestris pv. campestris str.
          B100]
 gi|126030541|pdb|2GBZ|A Chain A, The Crystal Structure Of Xc847 From Xanthomonas
          Campestris: A 3-5 Oligoribonuclease Of Dnaq Fold Family
          With A Novel Opposingly-Shifted Helix
 gi|167733168|emb|CAP51366.1| Oligoribonuclease [Xanthomonas campestris pv. campestris]
          Length = 194

 Score = 39.9 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIG 30
          R I  D+E TGLD+  D IIEI 
Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32


>gi|310767851|gb|ADP12801.1| exodeoxyribonuclease X [Erwinia sp. Ejp617]
          Length = 221

 Score = 39.9 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 20/174 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V++++           + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGL---QGGVVEVASVDVINGQIL-NPMSDLISPD-RPISRQAMAVHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP+       +       +  ++AHNA FD   +                 I T+++A
Sbjct: 59  RGKPAIEQAIGRYH-----GSPFYVAHNASFDRRMLPE----------MHGDWICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           RR  P  +    +L +   + +S  +   A    +        +M   S   + 
Sbjct: 104 RRLWPGLKYTNEALRQSLQLEVSPPADLHAHRALYDCYVTAALLMRIMSFSGWD 157


>gi|303229628|ref|ZP_07316416.1| exonuclease [Veillonella atypica ACS-134-V-Col7a]
 gi|302515753|gb|EFL57707.1| exonuclease [Veillonella atypica ACS-134-V-Col7a]
          Length = 327

 Score = 39.9 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 68/187 (36%), Gaps = 25/187 (13%)

Query: 7   MRKIVFDIE------------------TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           M  I+FD+E                   TG       II+IGA++L +  +   +F +++
Sbjct: 1   MDYIIFDLEWNQPYSNDISFMKRARMPLTG------EIIQIGAIKLNENLEIVDSFTMYV 54

Query: 49  CPNGRKNSPEALKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            P    +  + +K   GIT++ L     F + +S F  +  +             +   N
Sbjct: 55  KPKYLPHMHKHVKALTGITNQDLNRGVPFRAAYSHFQQWCGKDYMLLSWGADDILILREN 114

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             L ++     D       L   +R   + +  +    +   I+    S H AL D+   
Sbjct: 115 LLLHKLKSIDYDSWADAQMLYSYQRYGTTQQYSVAHAMEDLHISSEELSAHNALHDAIFT 174

Query: 168 SDVYIKM 174
           + +  K+
Sbjct: 175 AHICQKL 181


>gi|293344344|ref|XP_002725706.1| PREDICTED: exonuclease domain containing 1-like [Rattus norvegicus]
          Length = 687

 Score = 39.9 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 51/177 (28%), Gaps = 6/177 (3%)

Query: 10  IVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE  AV L     +    F  ++ P      S    +L 
Sbjct: 38  IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI    + +        S+F  + ++   +     A  D      E++           +
Sbjct: 98  GIKQVQVDEGVPLKICLSQFGKWIHKLQQQKKISFATGDSEPSTPEVKPCAFVTWSDWDL 157

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              L    ++    +    +       T            S  L +V I+       
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYNRKPKGLSGALQEVGIEFSGREHS 214


>gi|156052617|ref|XP_001592235.1| hypothetical protein SS1G_06475 [Sclerotinia sclerotiorum 1980]
 gi|154704254|gb|EDO03993.1| hypothetical protein SS1G_06475 [Sclerotinia sclerotiorum 1980
          UF-70]
          Length = 190

 Score = 39.9 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 2/57 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD + D IIEI  +             +   +  +               
Sbjct: 13 IDCEMTGLDIEKDVIIEISCIITNGNLEILDKEGWNAVIHQDKETMDKMDEWCTKTH 69


>gi|21231607|ref|NP_637524.1| oligoribonuclease [Xanthomonas campestris pv. campestris str.
          ATCC 33913]
 gi|66768271|ref|YP_243033.1| oligoribonuclease [Xanthomonas campestris pv. campestris str.
          8004]
 gi|23821916|sp|Q8P8S1|ORN_XANCP RecName: Full=Oligoribonuclease
 gi|81305754|sp|Q4UVB0|ORN_XANC8 RecName: Full=Oligoribonuclease
 gi|21113297|gb|AAM41448.1| oligoribonuclease [Xanthomonas campestris pv. campestris str.
          ATCC 33913]
 gi|66573603|gb|AAY49013.1| oligoribonuclease [Xanthomonas campestris pv. campestris str.
          8004]
          Length = 194

 Score = 39.9 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIG 30
          R I  D+E TGLD+  D IIEI 
Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32


>gi|327479762|gb|AEA83072.1| ribonuclease T [Pseudomonas stutzeri DSM 4166]
          Length = 224

 Score = 39.9 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 59/186 (31%), Gaps = 13/186 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP---NGRKNSPEALKL 62
           +V D+E  G +   D ++EI AV +            T    + P      + +      
Sbjct: 32  VVIDVECGGFNCATDALLEIAAVTVGMDEQGLLYPQDTLFYRVEPFAGANIEPAALEFTG 91

Query: 63  HGITDEFLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
             +        P             +       + A  + HN+ FD+GF+NA + R    
Sbjct: 92  IKLDHPLRMAVPEQQALTDIFRSVRKAVKSAGCKRAILVGHNSSFDLGFLNAAIARCEIK 151

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +         +  L   C+  GI    R  H A  D+   ++++  ++ 
Sbjct: 152 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 211

Query: 177 GGSQIN 182
              ++ 
Sbjct: 212 RWKEMG 217


>gi|332528277|ref|ZP_08404282.1| oligoribonuclease [Hylemonella gracilis ATCC 19624]
 gi|332042297|gb|EGI78618.1| oligoribonuclease [Hylemonella gracilis ATCC 19624]
          Length = 195

 Score = 39.9 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          ++K+    +  D E TGLD + +R+IEI  +
Sbjct: 14 LKKSDQNLVWIDCEMTGLDPEKERLIEIAII 44


>gi|183985996|gb|AAI66309.1| LOC100158598 protein [Xenopus (Silurana) tropicalis]
          Length = 273

 Score = 39.9 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 5  NKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          N M  R +  D+E TGLD + D IIE+  +
Sbjct: 69 NDMGQRMVWVDLEMTGLDIEKDHIIEMACL 98


>gi|28056789|gb|AAO28661.1| exodeoxyribonuclease I [Xylella fastidiosa Temecula1]
          Length = 494

 Score = 39.9 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 41/154 (26%), Gaps = 4/154 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGIT 66
            + +D+ET G D +  RI +  AV      +         + P       P A  + GIT
Sbjct: 21  FLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGIT 80

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +  + +    +           Q            + F +  ++             + 
Sbjct: 81  PQHAQREGINEAAAFAHIAMQMTQPHTCSL--GYNTLRFDDEFIRYGLFRHFYDPYEREW 138

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
            +   R        L    +  GI    R     
Sbjct: 139 RNGNSRWDLLDMLRLMHAVRPEGIHWPTREDGAP 172


>gi|226193790|ref|ZP_03789392.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
          catalytic domain protein [Burkholderia pseudomallei
          Pakistan 9]
 gi|225934095|gb|EEH30080.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
          catalytic domain protein [Burkholderia pseudomallei
          Pakistan 9]
          Length = 55

 Score = 39.9 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
            D+ETTG  +   RI EI    ++  +    T+   + P 
Sbjct: 17 FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ 55


>gi|29566899|ref|NP_818464.1| gp164 [Mycobacterium phage Omega]
 gi|29425624|gb|AAN12806.1| gp164 [Mycobacterium phage Omega]
          Length = 178

 Score = 39.9 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 5/35 (14%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44
          IV D ET GL   N  ++EI AV      +T   F
Sbjct: 6  IVVDTETGGLGP-NAPVLEIAAV----NVETGEEF 35


>gi|12855883|dbj|BAB30489.1| unnamed protein product [Mus musculus]
          Length = 274

 Score = 39.9 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 53/177 (29%), Gaps = 6/177 (3%)

Query: 10  IVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE  AV L     +    F  ++ P      S    +L 
Sbjct: 38  IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI    + +        S+F  + ++   +     A  D     +E++           +
Sbjct: 98  GIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTWSDWDL 157

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              L    R+    +    +       T     K      S  L +V I+       
Sbjct: 158 GVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQEVGIEFSGREHS 214


>gi|13242610|ref|NP_077624.1| EsV-1-139 [Ectocarpus siliculosus virus 1]
 gi|13177413|gb|AAK14557.1|AF204951_139 EsV-1-139 [Ectocarpus siliculosus virus 1]
          Length = 274

 Score = 39.9 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 48/198 (24%), Gaps = 2/198 (1%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL-HGITDEF 69
            D+ETTGLD+  + I+EI  V    D ++ +    V   P+    +  +           
Sbjct: 46  IDMETTGLDTDTNLILEIVMVVTDRDLNEIDSMRLVLHHPHSILMARSSTWCRKKFCHRR 105

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                 F +           +   W   +          +  +I        R +     
Sbjct: 106 EGGNGLFEACHFSALSHHEAEYRMWNFFDHYSKDVGGRYDTSQITSSQPFFDRTLGANGT 165

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
                 +SR       +R        +      D   L   +  +            T  
Sbjct: 166 FIGASDTSRYHHQHHPRRSNFKKCLLAGSTVYFDRIFLLKYFPCLKTFFHYRVVDVSTPL 225

Query: 190 DRFFKEEKKTVPNISLLK 207
           +   +        +    
Sbjct: 226 EMVRRWRPDVAAKLPRRN 243


>gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100]
 gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100]
          Length = 879

 Score = 39.9 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 48/181 (26%), Gaps = 10/181 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD ETTGLD+K  +I+         +S  +   + F  P         +         
Sbjct: 319 VAFDTETTGLDTKEAKIV--------GFSFCSHESEAFYVPLAHDY--LGVCKQISMQAA 368

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            K             +   +        N      + +  +    K+P     +      
Sbjct: 369 KKGIEKIYQSTVIGHNLKYDFEIIKNNFNLLPPKNYADTMILAWLKEPSLRVNMDVLAKR 428

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
                     DL    + +      ++   A  D+++    Y+  +    +         
Sbjct: 429 IFDYETLHFEDLVKKGESFAGVDVEKACKYAAEDAYITLRFYLYFLKNLEKSLLELAQKS 488

Query: 190 D 190
           +
Sbjct: 489 E 489


>gi|237785970|ref|YP_002906675.1| oligoribonuclease [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758882|gb|ACR18132.1| putative oligoribonuclease [Corynebacterium kroppenstedtii DSM
          44385]
          Length = 222

 Score = 39.9 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D E TGLD     ++EI A+
Sbjct: 24 RIVWIDCEMTGLDPSTHVLVEIAAI 48


>gi|52843158|ref|YP_096957.1| ribonuclease T [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|19880967|gb|AAM00600.1| Rnase T [Legionella pneumophila]
 gi|52630269|gb|AAU29010.1| ribonuclease T [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 207

 Score = 39.9 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDY-----SKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D+ET G+D + + ++E+  V L         K +  F+  L   G +   ++L+ + 
Sbjct: 22  VVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKDSSYFEHILPFPGAELDQKSLEFNQ 81

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                        +       Q A  + HNA FD+ FI A ++R    
Sbjct: 82  IDPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIKAAIKRTGIK 141

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L    +  G+    +  H A+ D+   +D++  M+ 
Sbjct: 142 SP-FHAFTCFDTATLAGLIFGETVLAKAAQAAGLHFDSQEAHSAIYDAEKTADLFCLMIN 200

Query: 177 GGSQINF 183
               +N 
Sbjct: 201 KWRMLNI 207


>gi|154340904|ref|XP_001566405.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063728|emb|CAM39913.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 405

 Score = 39.9 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 14/188 (7%)

Query: 10  IVFDIETTGLDSKN---DRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKN-SPEALKL 62
           IV D+E T           +IEI  V +          R+F  ++ P      +P   +L
Sbjct: 77  IVVDVEATCEQHNRNYPHEVIEIPGVLIDVRTGQVDRARSFHTYVKPWRNPRLTPFCTQL 136

Query: 63  HGITDEFLKDKPSF----SSIFSEFWDFFNEQNAEWIAHNAKFDVG---FINAELQRINK 115
            GIT E +   PS           + +          A +  +D       +  L+    
Sbjct: 137 TGITQEMVDAAPSITEAVQLFEKWYRETIPRGAKTIFAADGPWDFKNFIHEHHILRDHVG 196

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P      +D  +    +             R          H    D++ ++ + + MM
Sbjct: 197 FPSIFYEYLDIRTTFAHRLNHGVPIKLDAMLRKMHLRFDGRPHSGFDDAYNIARLTVAMM 256

Query: 176 VGGSQINF 183
             G  ++F
Sbjct: 257 KVGCVLDF 264


>gi|258546253|ref|ZP_05706487.1| DNA polymerase III, epsilon subunit [Cardiobacterium hominis ATCC
           15826]
 gi|258518519|gb|EEV87378.1| DNA polymerase III, epsilon subunit [Cardiobacterium hominis ATCC
           15826]
          Length = 141

 Score = 39.9 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 145 CKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204
           CK YGI  S+R+ HGALLDS LL++VY+K+     Q  F F   +     +  +TV   +
Sbjct: 50  CKYYGIDNSNRTLHGALLDSQLLAEVYLKLTT--EQSGFDFAAPDATPAPQPVETVSVAA 107

Query: 205 LLKRDKP-----LFTRITKEELDEHDKTIQTL 231
            +          L   +  EE   H   ++ L
Sbjct: 108 PVPAAPSQPGAWLAIAVPDEEAAAHRAIMEKL 139


>gi|94972232|ref|YP_594272.1| hypothetical protein Dgeo_2765 [Deinococcus geothermalis DSM 11300]
 gi|94554283|gb|ABF44198.1| 3'-5' exonuclease [Deinococcus geothermalis DSM 11300]
          Length = 116

 Score = 39.9 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 12/52 (23%)

Query: 8   RKIVF-------DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
           R+IV        D ETT  D +N  IIE+  V  +        F+  + P G
Sbjct: 66  REIVLRGTWLSLDTETTDKD-ENAEIIEVALVSPIGEVL----FESLVRPLG 112


>gi|329945803|ref|ZP_08293490.1| exonuclease [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528251|gb|EGF55229.1| exonuclease [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 258

 Score = 39.5 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
          FD ETTG+D   DR++    V
Sbjct: 26 FDTETTGVDPGRDRLVTAALV 46


>gi|227529584|ref|ZP_03959633.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC
           49540]
 gi|227350483|gb|EEJ40774.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC
           49540]
          Length = 178

 Score = 39.5 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 55/175 (31%), Gaps = 5/175 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K      +    + D       F   + P         +++HGI 
Sbjct: 1   MNFVAMDFET--ANGKRYSACSLALTIVRDSK-IADEFYTLINPQT-DFFWRNVQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++D P+F     +    F       IAHN  FD   +   L      P     +   
Sbjct: 57  EEDVQDAPTF-PEVWQHIKQFYRPEQLVIAHNNSFDNSVLKNTLLHYGIQPPTFQTLDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            S  R         LN++C    I + H         +     +Y      G Q+
Sbjct: 116 KSSRRLIPGLDNYRLNTVCDALQIDLHHHHNALDDAQACANILLYEAQHFSGEQL 170


>gi|149194243|ref|ZP_01871340.1| DNA polymerase III subunit epsilon [Caminibacter mediatlanticus
           TB-2]
 gi|149135418|gb|EDM23897.1| DNA polymerase III subunit epsilon [Caminibacter mediatlanticus
           TB-2]
          Length = 248

 Score = 39.5 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           + D+E      K  +IIEIGAV+L +    +  F   +
Sbjct: 68  ILDLEVNNSKPKEGQIIEIGAVKLKNLVPIDE-FSFLI 104


>gi|149235658|ref|XP_001523707.1| oligoribonuclease, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146452686|gb|EDK46942.1| oligoribonuclease, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 269

 Score = 39.5 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 4/59 (6%)

Query: 12  FDIETTGLDSKN-DRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNSPEALKLHGIT 66
            D E TGLD    DRIIEI  +   +  +       ++  +                  
Sbjct: 80  VDCEMTGLDVLGEDRIIEICCIVTDENLEVLGNGDYYESTIYYPQETLDKMDEWCQTTH 138


>gi|78047756|ref|YP_363931.1| oligoribonuclease [Xanthomonas campestris pv. vesicatoria str.
          85-10]
 gi|325928670|ref|ZP_08189846.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas perforans
          91-118]
 gi|123585062|sp|Q3BTI2|ORN_XANC5 RecName: Full=Oligoribonuclease
 gi|78036186|emb|CAJ23877.1| oligoribonuclease [Xanthomonas campestris pv. vesicatoria str.
          85-10]
 gi|325540966|gb|EGD12532.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas perforans
          91-118]
          Length = 194

 Score = 39.5 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIG 30
          R I  D+E TGLD+  D IIEI 
Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32


>gi|198284062|ref|YP_002220383.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218665313|ref|YP_002426714.1| oligoribonuclease Orn [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248583|gb|ACH84176.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218517526|gb|ACK78112.1| oligoribonuclease Orn [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 194

 Score = 39.5 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIG 30
          R I  D+E TGL    D+I+EI 
Sbjct: 7  RLIWIDLEMTGLHPGQDQILEIA 29


>gi|327329611|gb|EGE71367.1| oligoribonuclease [Propionibacterium acnes HL096PA3]
          Length = 202

 Score = 39.5 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD  +D +IE+ A+              V + P  +        +  + 
Sbjct: 5  IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMH 60


>gi|50843110|ref|YP_056337.1| oligoribonuclease [Propionibacterium acnes KPA171202]
 gi|81826407|sp|Q6A786|ORN_PROAC RecName: Full=Oligoribonuclease
 gi|50840712|gb|AAT83379.1| oligoribonuclease [Propionibacterium acnes KPA171202]
 gi|313763467|gb|EFS34831.1| exonuclease [Propionibacterium acnes HL013PA1]
 gi|313808072|gb|EFS46553.1| exonuclease [Propionibacterium acnes HL087PA2]
 gi|313813519|gb|EFS51233.1| exonuclease [Propionibacterium acnes HL025PA1]
 gi|313816648|gb|EFS54362.1| exonuclease [Propionibacterium acnes HL059PA1]
 gi|313819642|gb|EFS57356.1| exonuclease [Propionibacterium acnes HL046PA2]
 gi|313822034|gb|EFS59748.1| exonuclease [Propionibacterium acnes HL036PA1]
 gi|313823730|gb|EFS61444.1| exonuclease [Propionibacterium acnes HL036PA2]
 gi|313826052|gb|EFS63766.1| exonuclease [Propionibacterium acnes HL063PA1]
 gi|313829524|gb|EFS67238.1| exonuclease [Propionibacterium acnes HL063PA2]
 gi|314914829|gb|EFS78660.1| exonuclease [Propionibacterium acnes HL005PA4]
 gi|314919419|gb|EFS83250.1| exonuclease [Propionibacterium acnes HL050PA1]
 gi|314920674|gb|EFS84505.1| exonuclease [Propionibacterium acnes HL050PA3]
 gi|314924777|gb|EFS88608.1| exonuclease [Propionibacterium acnes HL036PA3]
 gi|314930554|gb|EFS94385.1| exonuclease [Propionibacterium acnes HL067PA1]
 gi|314954492|gb|EFS98898.1| exonuclease [Propionibacterium acnes HL027PA1]
 gi|314957575|gb|EFT01678.1| exonuclease [Propionibacterium acnes HL002PA1]
 gi|314961982|gb|EFT06083.1| exonuclease [Propionibacterium acnes HL002PA2]
 gi|314968385|gb|EFT12483.1| exonuclease [Propionibacterium acnes HL037PA1]
 gi|314978912|gb|EFT23006.1| exonuclease [Propionibacterium acnes HL072PA2]
 gi|314986647|gb|EFT30739.1| exonuclease [Propionibacterium acnes HL005PA2]
 gi|314991003|gb|EFT35094.1| exonuclease [Propionibacterium acnes HL005PA3]
 gi|315083650|gb|EFT55626.1| exonuclease [Propionibacterium acnes HL027PA2]
 gi|315087019|gb|EFT58995.1| exonuclease [Propionibacterium acnes HL002PA3]
 gi|315089194|gb|EFT61170.1| exonuclease [Propionibacterium acnes HL072PA1]
 gi|315099093|gb|EFT71069.1| exonuclease [Propionibacterium acnes HL059PA2]
 gi|315100423|gb|EFT72399.1| exonuclease [Propionibacterium acnes HL046PA1]
 gi|315106884|gb|EFT78860.1| exonuclease [Propionibacterium acnes HL030PA1]
 gi|315109117|gb|EFT81093.1| exonuclease [Propionibacterium acnes HL030PA2]
 gi|327334124|gb|EGE75838.1| oligoribonuclease [Propionibacterium acnes HL097PA1]
 gi|327446295|gb|EGE92949.1| exonuclease [Propionibacterium acnes HL013PA2]
 gi|327454846|gb|EGF01501.1| exonuclease [Propionibacterium acnes HL087PA3]
 gi|327457869|gb|EGF04524.1| exonuclease [Propionibacterium acnes HL083PA2]
 gi|328752440|gb|EGF66056.1| exonuclease [Propionibacterium acnes HL020PA1]
 gi|328755323|gb|EGF68939.1| exonuclease [Propionibacterium acnes HL087PA1]
 gi|328758196|gb|EGF71812.1| exonuclease [Propionibacterium acnes HL025PA2]
 gi|332676038|gb|AEE72854.1| oligoribonuclease [Propionibacterium acnes 266]
          Length = 202

 Score = 39.5 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD  +D +IE+ A+              V + P  +        +  + 
Sbjct: 5  IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMH 60


>gi|170587529|ref|XP_001898528.1| Smfn protein [Brugia malayi]
 gi|158594003|gb|EDP32594.1| Smfn protein, putative [Brugia malayi]
          Length = 184

 Score = 39.5 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 1  MIRKNKMRKIV-FDIETTGLDSKNDRIIEIGA 31
          M + N++R+IV  D E TGLD  +  I+EI  
Sbjct: 1  MSKANRVRRIVWVDCEMTGLDVSSKTIVEIAC 32


>gi|296112880|ref|YP_003626818.1| oligoribonuclease [Moraxella catarrhalis RH4]
 gi|295920574|gb|ADG60925.1| oligoribonuclease [Moraxella catarrhalis RH4]
 gi|326561112|gb|EGE11477.1| oligoribonuclease [Moraxella catarrhalis 7169]
 gi|326564455|gb|EGE14682.1| oligoribonuclease [Moraxella catarrhalis 103P14B1]
 gi|326564568|gb|EGE14793.1| oligoribonuclease [Moraxella catarrhalis 12P80B1]
 gi|326564778|gb|EGE14990.1| oligoribonuclease [Moraxella catarrhalis 46P47B1]
 gi|326567572|gb|EGE17687.1| oligoribonuclease [Moraxella catarrhalis BC1]
 gi|326569420|gb|EGE19480.1| oligoribonuclease [Moraxella catarrhalis BC8]
 gi|326571382|gb|EGE21397.1| oligoribonuclease [Moraxella catarrhalis BC7]
 gi|326575336|gb|EGE25264.1| oligoribonuclease [Moraxella catarrhalis CO72]
 gi|326576579|gb|EGE26486.1| oligoribonuclease [Moraxella catarrhalis 101P30B1]
 gi|326577403|gb|EGE27287.1| oligoribonuclease [Moraxella catarrhalis O35E]
          Length = 195

 Score = 39.5 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLD 36
           D+E TGLD++ D IIEI  +   D
Sbjct: 23 IDLEMTGLDTQQDDIIEIATIVTDD 47


>gi|308048230|ref|YP_003911796.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
          DSM 9799]
 gi|307630420|gb|ADN74722.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
          DSM 9799]
          Length = 181

 Score = 39.5 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + + IIEI 
Sbjct: 11 IDLEMTGLDPEQNTIIEIA 29


>gi|295131162|ref|YP_003581825.1| Oligoribonuclease [Propionibacterium acnes SK137]
 gi|291377019|gb|ADE00874.1| Oligoribonuclease [Propionibacterium acnes SK137]
          Length = 205

 Score = 39.5 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD  +D +IE+ A+              V + P  +        +  + 
Sbjct: 8  IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMH 63


>gi|28493373|ref|NP_787534.1| oligoribonuclease [Tropheryma whipplei str. Twist]
 gi|81839131|sp|Q83GA7|ORN_TROWT RecName: Full=Oligoribonuclease
 gi|28476414|gb|AAO44503.1| oligoribonuclease [Tropheryma whipplei str. Twist]
          Length = 184

 Score = 39.5 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D E TGL+ + D ++E+  V
Sbjct: 13 VDCEMTGLNPERDELLEVAVV 33


>gi|71897974|ref|ZP_00680179.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
 gi|71732218|gb|EAO34273.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
          Length = 488

 Score = 39.5 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 41/154 (26%), Gaps = 4/154 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGIT 66
            + +D+ET G D +  RI +  AV      +         + P       P A  + GIT
Sbjct: 15  FLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGIT 74

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +  + +    +           Q            + F +  ++             + 
Sbjct: 75  PQHAQREGINEAAAFAHIAMQMTQPHTCSL--GYNTLRFDDEFIRYGLFRHFYDPYEREW 132

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
            +   R        L    +  GI    R     
Sbjct: 133 RNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAP 166


>gi|18311136|ref|NP_563070.1| exonuclease family protein [Clostridium perfringens str. 13]
 gi|110799345|ref|YP_696832.1| exonuclease family protein [Clostridium perfringens ATCC 13124]
 gi|168205611|ref|ZP_02631616.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
 gi|168208856|ref|ZP_02634481.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|168212809|ref|ZP_02638434.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|168215781|ref|ZP_02641406.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
 gi|169344238|ref|ZP_02865220.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
 gi|182623972|ref|ZP_02951760.1| exonuclease family protein [Clostridium perfringens D str. JGS1721]
 gi|18145819|dbj|BAB81860.1| probable DNA polymerase III epsilon chain [Clostridium perfringens
           str. 13]
 gi|110673992|gb|ABG82979.1| exonuclease family protein [Clostridium perfringens ATCC 13124]
 gi|169297697|gb|EDS79797.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
 gi|170662857|gb|EDT15540.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
 gi|170713011|gb|EDT25193.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170715467|gb|EDT27649.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|177910865|gb|EDT73219.1| exonuclease family protein [Clostridium perfringens D str. JGS1721]
 gi|182382180|gb|EDT79659.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
          Length = 300

 Score = 39.5 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 1/152 (0%)

Query: 24  DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSE 82
           + IIEIGA++L  + +    F+ ++ P+  K  +P+ + + GIT++ LKD   F      
Sbjct: 37  NEIIEIGAIKLNKFMQEVDEFKTYIKPSVFKVLNPKIIDITGITEDHLKDGIKFEDAMDN 96

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN 142
             DF  E +               NA+             I       +         L 
Sbjct: 97  LKDFIGEDDILCSWATDDIVHIVNNAKYHSYKNISWIKKYIDIQKYCTKILAHKKSLSLK 156

Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +   I +     H AL D+   ++V+ ++
Sbjct: 157 HALEELKIKMDKSKLHDALNDAVYTAEVFKRL 188


>gi|307177230|gb|EFN66425.1| DNA polymerase III polC-type [Camponotus floridanus]
          Length = 141

 Score = 39.5 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 9/45 (20%)

Query: 6  KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50
          KM  +VFD+ET+G    +D I+++ A+           F V++ P
Sbjct: 39 KM--VVFDLETSGRKKNSD-ILQLAAI------VQENVFSVYVTP 74


>gi|146422161|ref|XP_001487022.1| hypothetical protein PGUG_00399 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146388143|gb|EDK36301.1| hypothetical protein PGUG_00399 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 288

 Score = 39.5 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/138 (10%), Positives = 30/138 (21%), Gaps = 5/138 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALKLHGITDEF 69
            D E TGL+   D IIEI  +    +     +  ++  +                   + 
Sbjct: 83  IDCEMTGLNVYEDHIIEICCIITDGHMNIIDSQGYESTIYYPKEVLDSMNEWCVDQHGKS 142

Query: 70  LKDKPSFSSIFS---EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                   +      +  D   E    ++  N     G      +               
Sbjct: 143 GLTAKVLENTDRTLEKVQDELLEYIKRFVEPNKGIMAGNSIHMDKFFMNREFPRVIDYLH 202

Query: 127 LSIARRKHPSSRNDLNSL 144
             +            ++ 
Sbjct: 203 YRLIDVSTIMEIGHRHNP 220


>gi|262182582|ref|ZP_06042003.1| DNA polymerase III subunit epsilon [Corynebacterium aurimucosum
          ATCC 700975]
          Length = 223

 Score = 39.5 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT 43
          R + FD+ETT +  K  RI+    V +       R 
Sbjct: 7  RMLSFDLETTSVKPKEARIVTSALVRIDGREVDKRE 42


>gi|157373929|ref|YP_001472529.1| oligoribonuclease [Shewanella sediminis HAW-EB3]
 gi|157316303|gb|ABV35401.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis
          HAW-EB3]
          Length = 181

 Score = 39.5 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD   DR+IEI 
Sbjct: 11 VDLEMTGLDPSVDRVIEIA 29


>gi|47214707|emb|CAG01060.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 228

 Score = 39.5 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAV 32
          + FD+ETTGL S  D II++ AV
Sbjct: 14 VFFDLETTGLGSTCD-IIQLAAV 35


>gi|213646704|ref|ZP_03376757.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 154

 Score = 39.5 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL   +  I+EI  ++   +          + P  +    EA+ +HGIT+E
Sbjct: 20  YLFIDTETTGLG-DDAEIVEICIIDSHGFIM----LNTLIKP-TKPIPDEAIAIHGITNE 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
            +   P+++ I     + F         
Sbjct: 74  MVAFAPAWTDICGAVEELFRRFGFVIYN 101


>gi|254468761|ref|ZP_05082167.1| oligoribonuclease [beta proteobacterium KB13]
 gi|207087571|gb|EDZ64854.1| oligoribonuclease [beta proteobacterium KB13]
          Length = 184

 Score = 39.5 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 57/188 (30%), Gaps = 5/188 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + KN    I  D+E TGL+   D+IIE+  +    + +      V++     K S E L 
Sbjct: 1   MTKNNNNLIWIDMEMTGLNPVTDKIIEVAVIVTDPHLEIIAEAPVYV----IKQSNELLD 56

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH-NAKFDVGFINAELQRINKDPLDP 120
                +     K              N    E I   +   D          I +D    
Sbjct: 57  SMDAWNTNTHSKSGLIDKVKHSQITENVAERELINFLSQYVDKNKSPMCGNSICQDRRFM 116

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +  +  L           +    L KR+  ++  + K  A  ++       I+ +    +
Sbjct: 117 ANYMPQLESYFHYRNLDVSVFKELAKRWKTSLLGQFKKSAKHEALADIKESIEELKFYRE 176

Query: 181 INFGFKTN 188
                 + 
Sbjct: 177 HFLRLDSE 184


>gi|163814998|ref|ZP_02206385.1| hypothetical protein COPEUT_01151 [Coprococcus eutactus ATCC 27759]
 gi|158449681|gb|EDP26676.1| hypothetical protein COPEUT_01151 [Coprococcus eutactus ATCC 27759]
          Length = 326

 Score = 39.5 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 54/223 (24%), Gaps = 16/223 (7%)

Query: 6   KMRKIVFDIETTGL---DSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGR 53
            M  IV D+E                      IIEIGAV++         +   + P   
Sbjct: 2   TMNYIVMDLE----WNQSYNGHMGEHPRMPFEIIEIGAVKVDKNLNIIDEYSSLIKPKIY 57

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           K     ++     DE   +           +  +   N  +                   
Sbjct: 58  KKLHSKIRTILNYDENDLNLGRGFKEVCSEFLEWCGDNYIFCTWGPMDLTELQTNMDFYY 117

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                 P + ++  SI       S +          ++  +  ++     +   +     
Sbjct: 118 MDKLPRPLKFLNLQSIYASITNQSGSPQTMSKLEKAVSEMNIPENEPFHTALNDARYTAL 177

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           +M      N     + D +   + K               +RI
Sbjct: 178 VMKEMKVKNINQLYSFDLYIAPKDKAEEIEEFHNNQYEYISRI 220


>gi|318057465|ref|ZP_07976188.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318076919|ref|ZP_07984251.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
          Length = 244

 Score = 39.5 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
          FD+ETTG+D + DRI+    V
Sbjct: 12 FDLETTGIDVEADRIVT-ACV 31


>gi|266624851|ref|ZP_06117786.1| exonuclease family protein [Clostridium hathewayi DSM 13479]
 gi|288863268|gb|EFC95566.1| exonuclease family protein [Clostridium hathewayi DSM 13479]
          Length = 330

 Score = 39.5 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 67/235 (28%), Gaps = 26/235 (11%)

Query: 7   MR-KIVFDIE----------TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M+  IV D+E          T  +D     IIEIGAV L +  K    F+  + P  R  
Sbjct: 1   MKNYIVLDLEWNQSPDGKEGT--IDHFPFEIIEIGAVRLDEERKEIGEFRRLIRP--RVY 56

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
                ++  +T   + +       F      F E   +         +     +   +  
Sbjct: 57  PQMHYRISEVTHMDMAELERNGETFETVIRDFLEWCGDDCIFCTWGSMDLTELQRNMVYY 116

Query: 116 DPLDPS-----RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
               P              +  +    +     +          R  H AL D+H    V
Sbjct: 117 GVEIPFDKPLLYYDVQKLYSLLQGDGKQKQSLDITVEELGIREDRPFHRALDDAHYTGRV 176

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI--TKEELDE 223
              M     +    + + +     E K+    + +        +R   TKEE   
Sbjct: 177 MAAM---DFERVLEYWSTDYYRLPESKEEEVYL-VFPGYSKYISRAFETKEEAIA 227


>gi|54026013|ref|YP_120255.1| DNA polymerase III subunit epsilon [Nocardia farcinica IFM 10152]
 gi|54017521|dbj|BAD58891.1| putative DNA polymerase [Nocardia farcinica IFM 10152]
          Length = 229

 Score = 39.5 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 2/81 (2%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD+ETT  D  + R++    + +       R +     P+    +          +   
Sbjct: 10 AFDLETTSADPHSARVVTASIIRVDGGDVRARNW--IANPHIPIPAEATEIHGYTDEYVQ 67

Query: 71 KDKPSFSSIFSEFWDFFNEQN 91
          K     + + +E     +   
Sbjct: 68 KHGRPHADVIAEVTAELHACW 88


>gi|194745839|ref|XP_001955392.1| GF18739 [Drosophila ananassae]
 gi|190628429|gb|EDV43953.1| GF18739 [Drosophila ananassae]
          Length = 187

 Score = 39.5 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
          D+E TGLD + D+I+E+  V                 P    N P+ +  +         
Sbjct: 18 DLEMTGLDFEKDKILELACVITDKDLNVKSE-----GPCFAINHPQEVYDNMNEWCMKHH 72

Query: 73 K 73
           
Sbjct: 73 Y 73


>gi|297584199|ref|YP_003699979.1| DNA polymerase III subunit epsilon [Bacillus selenitireducens
           MLS10]
 gi|297142656|gb|ADH99413.1| DNA polymerase III, epsilon subunit [Bacillus selenitireducens
           MLS10]
          Length = 242

 Score = 39.5 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 64/167 (38%), Gaps = 8/167 (4%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD+ETTG      D ++ IGA +L  +       F   + P  +  S     L G+T E
Sbjct: 62  VFDLETTGFFCNLGDEVLAIGATKLNRNRIDFPEQFYEVIEP-VKPMSAFVSNLTGMTHE 120

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    +F      F  F        +  +           L    +        ID   
Sbjct: 121 EVTAGLAFPEA---FSKFLEFSKGSILVAHPASFDVQFLKILADRWRLHGYDPLYIDQYQ 177

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+  +P  RN L+ L K Y I      +H AL D+++ + V+  ++
Sbjct: 178 LAKSLYPRKRNSLDELIKLYQIE--TSGRHHALADAYMTATVFHHLL 222


>gi|320094495|ref|ZP_08026269.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon
          178 str. F0338]
 gi|319978573|gb|EFW10142.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon
          178 str. F0338]
          Length = 238

 Score = 39.5 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS 38
          FD ETTG     DR++    V  ++  
Sbjct: 11 FDTETTGTSPFKDRLVTAALVLRVEGR 37


>gi|300024532|ref|YP_003757143.1| exonuclease RNase T and DNA polymerase III [Hyphomicrobium
          denitrificans ATCC 51888]
 gi|299526353|gb|ADJ24822.1| Exonuclease RNase T and DNA polymerase III [Hyphomicrobium
          denitrificans ATCC 51888]
          Length = 225

 Score = 39.5 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 6/29 (20%)

Query: 8  RKIVFDIETTGL------DSKNDRIIEIG 30
          R +  D ETTGL         +DR+I IG
Sbjct: 23 RILFVDTETTGLRRPSAASEDHDRVISIG 51


>gi|307191510|gb|EFN75025.1| Three prime repair exonuclease 2 [Camponotus floridanus]
          Length = 324

 Score = 39.5 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 41/141 (29%), Gaps = 11/141 (7%)

Query: 9   KIVFDIETTGLDSKN--DRIIEIGAVEL-------LDYSKTNRTFQVFLCP--NGRKNSP 57
            I FD+ETTGL  +    RI EI  + +        + +   R  Q  + P    +   P
Sbjct: 6   FIFFDLETTGLIQEKLMPRITEIALIAVGRESICNSNKASLPRVLQKLILPINPQKIIPP 65

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
               +  + ++ +    SF     E    F ++    I   A     F      +  +  
Sbjct: 66  NVEYITKLFNDEMLLLQSFECEVYELIMRFLQRLTPPICFAAHNGKSFYYPIFFQELERT 125

Query: 118 LDPSRIIDTLSIARRKHPSSR 138
                         +      
Sbjct: 126 NKVLDDKILCIDTWKMFKDFF 146


>gi|291528936|emb|CBK94522.1| DNA polymerase family B, exonuclease domain [Eubacterium rectale
          M104/1]
          Length = 365

 Score = 39.5 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 6/46 (13%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIE-IGAV-ELLDYSKTNRTF 44
          + ++N M    FDIETTG       I+  IG    + +    ++ F
Sbjct: 20 IFKENTM---FFDIETTGFSPVK-AIVYMIGCARRIKNRIVIDQYF 61


>gi|289426433|ref|ZP_06428176.1| exonuclease [Propionibacterium acnes SK187]
 gi|289153161|gb|EFD01879.1| exonuclease [Propionibacterium acnes SK187]
          Length = 205

 Score = 39.5 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD  +D +IE+ A+              V + P  +        +  + 
Sbjct: 8  IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMH 63


>gi|238924002|ref|YP_002937518.1| possible elongation subunit of DNA-dependent DNA polymerase
          [Eubacterium rectale ATCC 33656]
 gi|238875677|gb|ACR75384.1| possible elongation subunit of DNA-dependent DNA polymerase
          [Eubacterium rectale ATCC 33656]
 gi|291524743|emb|CBK90330.1| DNA polymerase family B, exonuclease domain [Eubacterium rectale
          DSM 17629]
          Length = 365

 Score = 39.5 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 6/46 (13%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIE-IGAV-ELLDYSKTNRTF 44
          + ++N M    FDIETTG       I+  IG    + +    ++ F
Sbjct: 20 IFKENTM---FFDIETTGFSPVK-AIVYMIGCARRIKNRIVIDQYF 61


>gi|168180335|ref|ZP_02614999.1| putative DNA polymerase III, epsilon subunit [Clostridium
          botulinum NCTC 2916]
 gi|226949002|ref|YP_002804093.1| putative DNA polymerase III subunit epsilon [Clostridium
          botulinum A2 str. Kyoto]
 gi|182668792|gb|EDT80770.1| putative DNA polymerase III, epsilon subunit [Clostridium
          botulinum NCTC 2916]
 gi|226843902|gb|ACO86568.1| putative DNA polymerase III, epsilon subunit [Clostridium
          botulinum A2 str. Kyoto]
          Length = 195

 Score = 39.5 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRT 43
          M+KI  D ETTGL+     II++   V  +++    + 
Sbjct: 1  MKKIFIDTETTGLEPG--EIIQLTYCVCDINFRGEEKV 36


>gi|42522865|ref|NP_968245.1| oligoribonuclease [Bdellovibrio bacteriovorus HD100]
 gi|39574061|emb|CAE79238.1| Oligoribonuclease [Bdellovibrio bacteriovorus HD100]
          Length = 175

 Score = 39.5 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           D+E TGLD + + IIE+ A+      K   TF+  +    +             
Sbjct: 7  IDMEMTGLDVEKEVIIEVAAIVTDLNFKELETFETVVKQPQKYLDSMDAWNTEHH 61


>gi|227494840|ref|ZP_03925156.1| DNA polymerase III subunit epsilon [Actinomyces coleocanis DSM
          15436]
 gi|226831292|gb|EEH63675.1| DNA polymerase III subunit epsilon [Actinomyces coleocanis DSM
          15436]
          Length = 232

 Score = 39.5 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
          FD+ETTG+D+  DRI+   + E+   S+      +   P 
Sbjct: 11 FDLETTGVDTARDRIVT-ASYEVRCGSEVLEQVTLLFNPG 49


>gi|50287235|ref|XP_446047.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525354|emb|CAG58971.1| unnamed protein product [Candida glabrata]
          Length = 250

 Score = 39.5 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 16/36 (44%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD 36
          M   N    +  D E TGLD  ND IIEI  +    
Sbjct: 32 METSNTKPLVWIDCEMTGLDHVNDEIIEICCIVTDG 67


>gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5]
          Length = 958

 Score = 39.5 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/16 (68%), Positives = 12/16 (75%)

Query: 12  FDIETTGLDSKNDRII 27
           FD ETTG D  NDRI+
Sbjct: 391 FDTETTGFDIFNDRIV 406


>gi|149195011|ref|ZP_01872104.1| DNA polymerase III, epsilon chain [Caminibacter mediatlanticus
           TB-2]
 gi|149134932|gb|EDM23415.1| DNA polymerase III, epsilon chain [Caminibacter mediatlanticus
           TB-2]
          Length = 274

 Score = 39.5 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 60/174 (34%), Gaps = 8/174 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD ETT  D     II    V     S   +     L P  +  S EA ++H I  E L
Sbjct: 106 VFDTETT--DIYG-YIISYAFVIQDMDSLETKEIYELLNPKAK-ISEEAYEVHKIKQEDL 161

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---ELQRINKDPLDPSRIIDTL 127
           +DKP+F        D FN  +   + HN  FD G +       +        P       
Sbjct: 162 EDKPTFEEKKEYILDLFNSVDMI-VGHNVFFDFGVLKRELERAKHFPNIIEVPIFDTMFY 220

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           S         +         + +       H AL D  +   V+ +++  G ++
Sbjct: 221 SWDIVVLDKKKQPRLEEAVAFFLGPQKAQYHNALEDVKMTLKVFNRLLEEGKKL 274


>gi|192360800|ref|YP_001983571.1| oligoribonuclease [Cellvibrio japonicus Ueda107]
 gi|190686965|gb|ACE84643.1| oligoribonuclease [Cellvibrio japonicus Ueda107]
          Length = 185

 Score = 39.5 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 12/19 (63%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD   D IIEI 
Sbjct: 14 IDLEMTGLDPDKDVIIEIA 32


>gi|238789017|ref|ZP_04632806.1| Exodeoxyribonuclease 10 [Yersinia frederiksenii ATCC 33641]
 gi|238722781|gb|EEQ14432.1| Exodeoxyribonuclease 10 [Yersinia frederiksenii ATCC 33641]
          Length = 219

 Score = 39.5 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 70/188 (37%), Gaps = 20/188 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET GL      I+EI +++++D   +       + P+ R  S +A+ +H IT
Sbjct: 1   MYFRVIDTETCGL---EGGIVEIASIDVVDGVLS-NPMSDLVSPD-RPISIDAMVIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++ KP  +    ++       +  ++AHNA FD G +               + I T
Sbjct: 56  EDMVEGKPRIAVAVRKYQ-----GSPYYVAHNAPFDRGVLPE----------MGGQWICT 100

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +AR  +P  ++    L     + +S           +        +        +   
Sbjct: 101 LKLARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIMQDSGWNAD 160

Query: 187 TNEDRFFK 194
              +   +
Sbjct: 161 QMAEITQQ 168


>gi|194226477|ref|XP_001915858.1| PREDICTED: similar to histone mRNA 3 end-specific exonuclease
           [Equus caballus]
          Length = 349

 Score = 39.5 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T   G   +    IIE   V L  ++ +   TFQ ++ P      S   + L G
Sbjct: 132 IIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINLTG 191

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +  +  D+   +              + +    +       +    
Sbjct: 192 ITQDLVDGADTFPQVLRKVVDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCRLSRLKYP 251

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++M+
Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAVRML 310

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 311 QDGCELRIN 319


>gi|161378162|ref|NP_299304.2| exonuclease I [Xylella fastidiosa 9a5c]
          Length = 478

 Score = 39.5 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 43/155 (27%), Gaps = 4/155 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGI 65
             + +D+ET G D +  RI +  AV    + +         + P       P+A  + GI
Sbjct: 4   NFLFYDLETFGQDPRRTRIAQFAAVRTDTELNVIEEPISFLVKPADDLLPSPDATLITGI 63

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T +  + +    +           +            + F +  ++             +
Sbjct: 64  TPQHAQREGINEAAAFTHIAMQMTRPHTCSL--GYNTLRFDDEFIRYGLFRHFYDPYERE 121

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
             +   R        L    +  GI    R     
Sbjct: 122 WRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAP 156


>gi|148379717|ref|YP_001254258.1| putative DNA polymerase III, epsilon subunit [Clostridium
          botulinum A str. ATCC 3502]
 gi|153933415|ref|YP_001384014.1| putative DNA polymerase III, epsilon subunit [Clostridium
          botulinum A str. ATCC 19397]
 gi|153934824|ref|YP_001387556.1| putative DNA polymerase III, epsilon subunit [Clostridium
          botulinum A str. Hall]
 gi|148289201|emb|CAL83296.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502]
 gi|152929459|gb|ABS34959.1| putative DNA polymerase III, epsilon subunit [Clostridium
          botulinum A str. ATCC 19397]
 gi|152930738|gb|ABS36237.1| putative DNA polymerase III, epsilon subunit [Clostridium
          botulinum A str. Hall]
 gi|322805994|emb|CBZ03561.1| DNA polymerase III epsilon subunit [Clostridium botulinum H04402
          065]
          Length = 195

 Score = 39.5 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRT 43
          M+KI  D ETTGL+     II++   V  +++    + 
Sbjct: 1  MKKIFIDTETTGLEPG--EIIQLTYCVCDINFRGEEKV 36


>gi|84000359|ref|NP_001033281.1| three prime histone mRNA exonuclease 1 [Bos taurus]
 gi|81673840|gb|AAI09682.1| Three prime histone mRNA exonuclease 1 [Bos taurus]
 gi|296472395|gb|DAA14510.1| three prime histone mRNA exonuclease 1 [Bos taurus]
          Length = 349

 Score = 39.5 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T   G   +    IIE   V L  ++ +   TFQ ++ P      S   + L G
Sbjct: 132 IIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINLTG 191

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +  +  D+   +              + +    +       +    
Sbjct: 192 ITQDQVDKADTFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRLKYP 251

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++M+
Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAVRML 310

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 311 QDGCELRVN 319


>gi|307700293|ref|ZP_07637333.1| exonuclease [Mobiluncus mulieris FB024-16]
 gi|307614504|gb|EFN93733.1| exonuclease [Mobiluncus mulieris FB024-16]
          Length = 141

 Score = 39.5 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 7   MRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLH 63
           MR+ +  D ET   + +      +G V      K + ++   L P+      +P  + +H
Sbjct: 1   MREFVAIDFET--ANEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWVH 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E ++D P +S I  +   F  +     +AHN  FD   ++        + +   R 
Sbjct: 59  GITSEDVQDAPQWSDIADQVMTFIGD--RPIVAHNMAFDGYVLSDLASLYGTEEIPNRRF 116

Query: 124 I 124
            
Sbjct: 117 C 117


>gi|296221910|ref|XP_002756956.1| PREDICTED: 3'-5' exoribonuclease 1-like [Callithrix jacchus]
          Length = 348

 Score = 39.5 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGR-KNSPEALKLHG 64
           + D E T   G   +    IIE   V L  ++ +   TFQ ++ P    + S   + L G
Sbjct: 131 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTRLSDFCISLTG 190

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +  +  D+   +              + +    +       +    
Sbjct: 191 ITQDQVDRADTFPHVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQISRIKYP 250

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++M+
Sbjct: 251 SFAKKWINIRKSYGNFYKVPRSQTKLAIMLEKLGMDYDGRP-HCGLDDSKNIARIAVRML 309

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 310 QDGCELRIN 318


>gi|255022249|ref|ZP_05294243.1| Ribonuclease T [Acidithiobacillus caldus ATCC 51756]
 gi|254968305|gb|EET25873.1| Ribonuclease T [Acidithiobacillus caldus ATCC 51756]
          Length = 211

 Score = 39.5 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 70/187 (37%), Gaps = 12/187 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGI 65
           +V D+E+ G ++    ++EI A+ +       +        + P  G +  P AL  +GI
Sbjct: 15  VVVDVESAGFEAHRHALLEIAAIVITHADGQWQLGPRHHFHVEPFAGAELDPAALAFNGI 74

Query: 66  TDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                        +   +      +     + + A  + HNA FD+ F++A  +R+    
Sbjct: 75  DPYQPLRGALPEAEVFGTLYRALRKAVKEAHCRRAVLVGHNAHFDLSFLHAAEKRLRLKN 134

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                     +++      +   L    ++ G+    R  H AL D+   ++++  ++  
Sbjct: 135 SPFHPFSVIDTVSLAALALAETVLAKAVQKAGLAWDGREAHSALYDAERTAELFCWIVNR 194

Query: 178 GSQINFG 184
             ++   
Sbjct: 195 YDRLEDD 201


>gi|227875810|ref|ZP_03993936.1| possible DNA-directed DNA polymerase III [Mobiluncus mulieris ATCC
           35243]
 gi|227843558|gb|EEJ53741.1| possible DNA-directed DNA polymerase III [Mobiluncus mulieris ATCC
           35243]
          Length = 143

 Score = 39.5 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 7   MRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLH 63
           MR+ +  D ET   + +      +G V      K + ++   L P+      +P  + +H
Sbjct: 3   MREFVAIDFET--ANEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWVH 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E ++D P +S I  +   F  +     +AHN  FD   ++        + +   R 
Sbjct: 61  GITSEDVQDAPQWSDIADQVMTFIGD--RPIVAHNMAFDGYVLSDLASLYGTEEIPNRRF 118

Query: 124 I 124
            
Sbjct: 119 C 119


>gi|119776164|ref|YP_928904.1| oligoribonuclease [Shewanella amazonensis SB2B]
 gi|166216584|sp|A1SA28|ORN_SHEAM RecName: Full=Oligoribonuclease
 gi|119768664|gb|ABM01235.1| oligoribonuclease [Shewanella amazonensis SB2B]
          Length = 181

 Score = 39.5 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+ + DRI+EI 
Sbjct: 11 IDLEMTGLEPEVDRILEIA 29


>gi|71066107|ref|YP_264834.1| oligoribonuclease [Psychrobacter arcticus 273-4]
 gi|71039092|gb|AAZ19400.1| putative oligoribonuclease protein [Psychrobacter arcticus 273-4]
          Length = 195

 Score = 39.5 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD+ ND IIEI  V
Sbjct: 23 IDLEMTGLDTLNDEIIEIATV 43


>gi|315651981|ref|ZP_07904983.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315485810|gb|EFU76190.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 358

 Score = 39.5 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44
          + + FDIETTGL  KN  +  IG + + + +   + +
Sbjct: 24 KLLFFDIETTGLSPKNSNLYLIGCINVDNDNIIFKQW 60


>gi|315604595|ref|ZP_07879658.1| oligoribonuclease [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313607|gb|EFU61661.1| oligoribonuclease [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 213

 Score = 39.5 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPN 51
           D E TGLD  ND +IE+  V         +    V + P 
Sbjct: 14 IDCEMTGLDVANDALIEVAVVVTDGDLSIVDPGMDVLITPP 54


>gi|308177366|ref|YP_003916772.1| oligoribonuclease [Arthrobacter arilaitensis Re117]
 gi|307744829|emb|CBT75801.1| putative oligoribonuclease [Arthrobacter arilaitensis Re117]
          Length = 203

 Score = 39.5 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNG 52
          +  N  + +  D E TGLD  ND +IE+  +    D    +   QV + P  
Sbjct: 1  MASNSEKIVWIDCEMTGLDLVNDALIEVAVLITDSDLQIVDEGIQVVIKPEP 52


>gi|183983834|ref|YP_001852125.1| oligoribonuclease Orn [Mycobacterium marinum M]
 gi|183177160|gb|ACC42270.1| oligoribonuclease Orn [Mycobacterium marinum M]
          Length = 215

 Score = 39.5 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)

Query: 7  MRK--IVFDIETTGLDSKNDRIIEIGAV 32
          MR+  +  D E TGLD  +D++IEI A+
Sbjct: 1  MREELVWIDCEMTGLDLGSDKLIEIAAL 28


>gi|154148582|ref|YP_001406342.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC
           BAA-381]
 gi|153804591|gb|ABS51598.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC
           BAA-381]
          Length = 262

 Score = 39.5 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             DIET G      +IIEIGA+++    +   TF+ F+           ++L GI    L
Sbjct: 77  FVDIETNGG-IDKGQIIEIGAIKVRA-KEILNTFKTFV--YASNIPENIVELTGIHTNDL 132

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           K+ P  S++   F       ++ ++AHN KFD GFI
Sbjct: 133 KNAPHLSNVLENF--RLFLGDSVFVAHNVKFDYGFI 166


>gi|170746460|ref|YP_001752720.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
 gi|170652982|gb|ACB22037.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
          Length = 289

 Score = 39.5 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 8/171 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + + D    +G   + D     R     + P   + +P  +++HGI 
Sbjct: 1   MTVLALDFET--ANERRDSACAVGLAWIADGRVVRRESH-LIRPPEMRFAPGNIRVHGIL 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              + DKP F+++ + +           +AHNA FD+G + A L R      D + +   
Sbjct: 58  PADVADKPDFAAVMAPYLGDL--ARGLILAHNASFDIGVLRAGLTRAGLPVPDLAYLCTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
               R         L  + +R GI       H A  D++  +++ +  M  
Sbjct: 116 QVSRRVFPAPEGCGLGKVARRLGIRF---EHHDAGEDAYACAEIALAAMRE 163


>gi|170760682|ref|YP_001787078.1| putative DNA polymerase III, epsilon subunit [Clostridium
          botulinum A3 str. Loch Maree]
 gi|169407671|gb|ACA56082.1| putative DNA polymerase III, epsilon subunit [Clostridium
          botulinum A3 str. Loch Maree]
          Length = 195

 Score = 39.5 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRT 43
          M+KI  D ETTGL+     II++   V  +++    + 
Sbjct: 1  MKKIFIDTETTGLEPG--EIIQLTYCVCDINFKGEEKV 36


>gi|170756602|ref|YP_001781306.1| putative DNA polymerase III, epsilon subunit [Clostridium
          botulinum B1 str. Okra]
 gi|169121814|gb|ACA45650.1| putative DNA polymerase III, epsilon subunit [Clostridium
          botulinum B1 str. Okra]
          Length = 195

 Score = 39.5 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEI 29
          M+KI  D ETTGL+     II++
Sbjct: 1  MKKIFIDTETTGLEPG--EIIQL 21


>gi|156844039|ref|XP_001645084.1| hypothetical protein Kpol_1035p39 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115740|gb|EDO17226.1| hypothetical protein Kpol_1035p39 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 263

 Score = 39.5 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 8/63 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNGRKNSPEALKLH 63
            D E TGL+  ND IIEI  +                +  ++  +  +    S       
Sbjct: 46  IDCEMTGLNHVNDHIIEICCIVTDGDMNVVKDPGTGEDNVYESVIHYDEEVMSKMNEWCI 105

Query: 64  GIT 66
              
Sbjct: 106 DQH 108


>gi|158255560|dbj|BAF83751.1| unnamed protein product [Homo sapiens]
 gi|261858590|dbj|BAI45817.1| exoribonuclease 1 [synthetic construct]
          Length = 349

 Score = 39.5 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T   G   +    IIE   V L  ++ +   TFQ ++ P      S   + L G
Sbjct: 132 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTG 191

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQN---------AEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +  +  D+   +              + +    +       +    
Sbjct: 192 ITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYP 251

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++M+
Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HCGLDDSKNIARIAVRML 310

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 311 QDGCELRIN 319


>gi|31543184|ref|NP_699163.2| 3'-5' exoribonuclease 1 [Homo sapiens]
 gi|45476938|sp|Q8IV48|ERI1_HUMAN RecName: Full=3'-5' exoribonuclease 1; AltName: Full=3'-5'
           exonuclease ERI1; AltName: Full=Eri-1 homolog; AltName:
           Full=Histone mRNA 3'-end-specific exoribonuclease;
           AltName: Full=Histone mRNA 3'-exonuclease 1; AltName:
           Full=Protein 3'hExo; Short=HEXO
 gi|23271401|gb|AAH35279.1| Exoribonuclease 1 [Homo sapiens]
 gi|33520761|gb|AAQ21219.1| 3' exoribonuclease [Homo sapiens]
 gi|119585973|gb|EAW65569.1| three prime histone mRNA exonuclease 1, isoform CRA_b [Homo
           sapiens]
 gi|119585974|gb|EAW65570.1| three prime histone mRNA exonuclease 1, isoform CRA_b [Homo
           sapiens]
 gi|123979876|gb|ABM81767.1| three prime histone mRNA exonuclease 1 [synthetic construct]
 gi|123994641|gb|ABM84922.1| three prime histone mRNA exonuclease 1 [synthetic construct]
          Length = 349

 Score = 39.5 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T   G   +    IIE   V L  ++ +   TFQ ++ P      S   + L G
Sbjct: 132 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTG 191

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQN---------AEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +  +  D+   +              + +    +       +    
Sbjct: 192 ITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYP 251

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++M+
Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HCGLDDSKNIARIAVRML 310

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 311 QDGCELRIN 319


>gi|311695397|gb|ADP98270.1| oligoribonuclease [marine bacterium HP15]
          Length = 180

 Score = 39.5 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M   N  R +  D+E TGLD + +RIIE+ 
Sbjct: 1  MAESN--RLVWIDLEMTGLDPEKERIIEMA 28


>gi|300932778|ref|ZP_07148034.1| oligoribonuclease [Corynebacterium resistens DSM 45100]
          Length = 215

 Score = 39.5 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D E TGLD     ++EI  +
Sbjct: 18 RIVWVDCEMTGLDPDQHVLVEIAVI 42


>gi|261254064|ref|ZP_05946637.1| oligoribonuclease [Vibrio orientalis CIP 102891]
 gi|260937455|gb|EEX93444.1| oligoribonuclease [Vibrio orientalis CIP 102891]
          Length = 181

 Score = 39.5 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  ++IEI 
Sbjct: 11 IDLEMTGLDPETHKVIEIA 29


>gi|289811457|ref|ZP_06542086.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
          Length = 70

 Score = 39.5 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
          + D ET GL      I+EI +V+++D +         + P+           
Sbjct: 4  IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPDRPITPQAMAIH 51


>gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251]
 gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251]
          Length = 902

 Score = 39.5 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 10  IVFDIETTGLDSKNDRII 27
           + FD ETTGLD +ND ++
Sbjct: 334 VAFDTETTGLDYENDSLV 351


>gi|93006558|ref|YP_580995.1| oligoribonuclease [Psychrobacter cryohalolentis K5]
 gi|92394236|gb|ABE75511.1| Exonuclease [Psychrobacter cryohalolentis K5]
          Length = 195

 Score = 39.5 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD+ ND IIEI  V
Sbjct: 23 IDLEMTGLDTLNDEIIEIATV 43


>gi|290968085|ref|ZP_06559634.1| DNA polymerase III subunit epsilon domain protein [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781991|gb|EFD94570.1| DNA polymerase III subunit epsilon domain protein [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 184

 Score = 39.5 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D ET   +   +    + AV++         +   + P      P  + +HGIT E +
Sbjct: 6   AIDFET--ANKYANSACSLAAVQMRGTQCIQEQY-SLIKPPFMTFEPTNIAIHGITPEQV 62

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + + +F  ++  F     +      AH A FD   + + L+  + D    + +       
Sbjct: 63  RQEKNFLQLWPLFKPCMEK--KILAAHYAVFDTRVLRSTLKTYHLDVPAATYVCTVQISR 120

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS 156
           +       + L+++    G +  H  
Sbjct: 121 KVWPQLPNHKLDTVANMLGYSFHHHH 146


>gi|270158349|ref|ZP_06187006.1| ribonuclease T [Legionella longbeachae D-4968]
 gi|289163409|ref|YP_003453547.1| ribonuclease T [Legionella longbeachae NSW150]
 gi|269990374|gb|EEZ96628.1| ribonuclease T [Legionella longbeachae D-4968]
 gi|288856582|emb|CBJ10387.1| ribonuclease T [Legionella longbeachae NSW150]
          Length = 205

 Score = 39.5 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 17/196 (8%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIE--IGAVELLDYSKT--NRTFQVFLCP-NG 52
           M  KN+ R    +V D+ET G++ + + ++E  I  + + D  K    +++   + P +G
Sbjct: 9   MNIKNRFRGFLPVVVDVETAGVNPQKNALLEMCIVLILMDDQGKFYRGKSYFEHILPFSG 68

Query: 53  RKNSPEALKLHGITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
            +  P++L+ + I                 +           F  Q A  + HNA FD+ 
Sbjct: 69  SELDPKSLEFNQIDPFQPLRFAIDEKTALENLFHPIFAALKIFQCQRAVLVGHNAWFDLL 128

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           FI   ++R               +         +  L    +  GI    +  H A+ D+
Sbjct: 129 FIKEAIKRTGVKSP-FHAFTCFDTATLGGFIYGQTVLAKAAQAAGIAFDAQEAHSAIYDA 187

Query: 165 HLLSDVYIKMMVGGSQ 180
              +D++  M     Q
Sbjct: 188 EKTADLFCHMANLWQQ 203


>gi|168184675|ref|ZP_02619339.1| putative DNA polymerase III, epsilon subunit [Clostridium
          botulinum Bf]
 gi|237795168|ref|YP_002862720.1| putative DNA polymerase III subunit epsilon [Clostridium
          botulinum Ba4 str. 657]
 gi|182672241|gb|EDT84202.1| putative DNA polymerase III, epsilon subunit [Clostridium
          botulinum Bf]
 gi|229261088|gb|ACQ52121.1| putative DNA polymerase III, epsilon subunit [Clostridium
          botulinum Ba4 str. 657]
          Length = 195

 Score = 39.5 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRT 43
          M+KI  D ETTGL+     II++   V  +++    + 
Sbjct: 1  MKKIFIDTETTGLEPG--EIIQLTYCVCDINFRGEEKV 36


>gi|156546675|ref|XP_001603963.1| PREDICTED: similar to ENSANGP00000010833 [Nasonia vitripennis]
          Length = 185

 Score = 39.5 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 39/115 (33%), Gaps = 3/115 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I  D+E TGL+   D+I+E+ ++   D     +  FQ+ +  +               
Sbjct: 11  RIIWIDLEMTGLNVMQDKILEVASIITDDQLNIVSDEFQMVIHQSEDVFETMIPWCQEQH 70

Query: 67  DEF--LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           ++   ++   +         +       +++ HN     G      +   +  + 
Sbjct: 71  NKTGLIEASRNSIFNEEMAEEELIRFFRKYVPHNTCPLAGSCLYMDRAFLQQHMP 125


>gi|145641462|ref|ZP_01797040.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
 gi|145273753|gb|EDK13621.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.4-21]
          Length = 59

 Score = 39.5 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 194 KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRYISSN 244
           +E+       ++         + T +EL  H + ++ L K    N +WD+   +N
Sbjct: 2   QEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMLNKKSGNNCLWDKRFGNN 56


>gi|110597891|ref|ZP_01386173.1| Exonuclease [Chlorobium ferrooxidans DSM 13031]
 gi|110340468|gb|EAT58954.1| Exonuclease [Chlorobium ferrooxidans DSM 13031]
          Length = 189

 Score = 39.5 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 65/187 (34%), Gaps = 18/187 (9%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSP 57
            + FD E+TGL         D     R++++  +      ++T  +    + P G    P
Sbjct: 2   YLFFDTESTGLPRNWKAPVTDLGNWLRLVQLAYLSFDGVGNQTG-SGNFIVRPEGFSIPP 60

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           EA  +HGI+      +        E +    E+    +AHN  FD   + AE  R+    
Sbjct: 61  EAAAIHGISTAQALAEGLELKRVMEEFYAEVERAEWLVAHNMSFDEKILGAEFLRLGMPN 120

Query: 118 L------DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +        +        A +    ++    S   +       +  H A +D  + +  +
Sbjct: 121 ILLAKKKICTMQESVDFCAIKNSYGNKWPKLSELHQKLFNCDFQESHNASVDVAVTAKCF 180

Query: 172 IKMMVGG 178
            ++   G
Sbjct: 181 WELKRLG 187


>gi|9107140|gb|AAF84824.1|AE004021_1 exodeoxyribonuclease I [Xylella fastidiosa 9a5c]
          Length = 494

 Score = 39.5 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 43/155 (27%), Gaps = 4/155 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGI 65
             + +D+ET G D +  RI +  AV    + +         + P       P+A  + GI
Sbjct: 20  NFLFYDLETFGQDPRRTRIAQFAAVRTDTELNVIEEPISFLVKPADDLLPSPDATLITGI 79

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T +  + +    +           +            + F +  ++             +
Sbjct: 80  TPQHAQREGINEAAAFTHIAMQMTRPHTCSL--GYNTLRFDDEFIRYGLFRHFYDPYERE 137

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
             +   R        L    +  GI    R     
Sbjct: 138 WRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAP 172


>gi|237785839|ref|YP_002906544.1| DNA polymerase III subunit epsilon [Corynebacterium
          kroppenstedtii DSM 44385]
 gi|237758751|gb|ACR18001.1| DNA polymerase III, epsilon subunit [Corynebacterium
          kroppenstedtii DSM 44385]
          Length = 236

 Score = 39.5 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 2/80 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
          FD+ETTG +    RI+    V +     +  + ++   P        +      T+   +
Sbjct: 21 FDLETTGTNPLQARIVTSALVSIHGG--SANSTELLADPGIEIPESASQIHGISTEYARE 78

Query: 72 DKPSFSSIFSEFWDFFNEQN 91
                 +  +      +  
Sbjct: 79 HGEPHDDVLHKTIRAIYDGW 98


>gi|152941094|gb|ABS44984.1| histone mRNA 3' end-specific exonuclease [Bos taurus]
          Length = 349

 Score = 39.5 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T   G   +    IIE   V L  ++ +   TFQ ++ P      S   + L G
Sbjct: 132 IIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINLTG 191

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +  +  D+   +              + +    +       +    
Sbjct: 192 ITQDQVDKADTFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRLKYP 251

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++M+
Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAVRML 310

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 311 QDGCELRVN 319


>gi|258515120|ref|YP_003191342.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778825|gb|ACV62719.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
          Length = 755

 Score = 39.1 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 9   KIVFDIETTGLDSKNDRII 27
           +I  D ETTGLD  ND I+
Sbjct: 139 EIAVDTETTGLDVYNDVIV 157


>gi|150401941|ref|YP_001329235.1| exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C7]
 gi|150032971|gb|ABR65084.1| Exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C7]
          Length = 189

 Score = 39.1 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 48/141 (34%), Gaps = 6/141 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ETTGL+     I +I  +   D     +   ++   N  +   +++    I 
Sbjct: 1   MK-VFLDTETTGLEPGQ--IAQISYIISDDDLNIQKAENIYFKVNSMETKAQSVHGLSIE 57

Query: 67  D-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E L D  SF+   ++  D         I HN  FD  F+N+E  R   +         
Sbjct: 58  KLELLSDGKSFTDHANQILDDI--DQKILICHNVPFDYKFLNSEFVRCGIEYDPKKFCTM 115

Query: 126 TLSIARRKHPSSRNDLNSLCK 146
                    P+         +
Sbjct: 116 NHYTNLCGIPNPYRPGYKWPR 136


>gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
 gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
          Length = 879

 Score = 39.1 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 49/182 (26%), Gaps = 20/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD ETTGLD+K  +I+                F   +  N     P      G+ ++ 
Sbjct: 319 IAFDTETTGLDAKEAKIV---------------GFSFCMNENEAFYVPLTHNYLGVGEQI 363

Query: 70  -----LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                 K      + F    +   +        N      + +  +    K+P     + 
Sbjct: 364 SLQSAKKAIELIFNHFVIGHNLKYDFKIIQNNFNLTLPQEYADTMILAWLKNPSLRVNMD 423

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           D               L    + +      ++   A  D+++    Y+  +         
Sbjct: 424 DLALRLFNYETLHFESLVKKGENFTSVELEKACKYAAEDAYITLRFYLYFLKNLETPLLE 483

Query: 185 FK 186
             
Sbjct: 484 LA 485


>gi|154247607|ref|YP_001418565.1| exonuclease RNase T and DNA polymerase III [Xanthobacter
           autotrophicus Py2]
 gi|154161692|gb|ABS68908.1| Exonuclease RNase T and DNA polymerase III [Xanthobacter
           autotrophicus Py2]
          Length = 200

 Score = 39.1 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 59/191 (30%), Gaps = 29/191 (15%)

Query: 11  VFDIETTGLDSKNDR----------IIEIGAVELLDYSKTNRTFQVFLCP---NGRKNSP 57
            +D ETTG    +DR          I+++ A    D  +    F   + P   +G     
Sbjct: 4   FWDTETTGF--FDDRLPVDHKAQPYIVQLAAQLCEDDGRPIAGFSFIIDPGIGDGINIPE 61

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--- 114
            A  +HGIT+E        +      +    ++     AHNAKFD G     + R     
Sbjct: 62  RAAAVHGITNERAVQFGVSTEFALSAFTHLYQRADMVCAHNAKFDKGVTETAISRHYGRV 121

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-----------CKRYGITISHRSKHGALLD 163
                P       +      P +     +            C R+         H A++D
Sbjct: 122 MPLRKPVFCTMESATPIINLPPTDRMRAAGFNKPKPPKLEECIRHFFGEDLDGAHDAMVD 181

Query: 164 SHLLSDVYIKM 174
                 VY  +
Sbjct: 182 VAACRRVYFHL 192


>gi|253583228|ref|ZP_04860426.1| exonuclease RNase T and DNA polymerase III [Fusobacterium varium
           ATCC 27725]
 gi|251833800|gb|EES62363.1| exonuclease RNase T and DNA polymerase III [Fusobacterium varium
           ATCC 27725]
          Length = 188

 Score = 39.1 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 59/191 (30%), Gaps = 24/191 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP--------------- 50
           M+ +  D ET G+ ++   +I++ G V++    +    F  ++ P               
Sbjct: 1   MKILFIDTETGGI-TEKSALIQLSGIVQI--GKEVAEEFNFYVKPFPGSEVTDEALKIQG 57

Query: 51  ----NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
                  K   E +          K    ++         +N +    +  N        
Sbjct: 58  RTREEIEKYDSEEVVFRKFMKILNKHIDKYNKEDKFLVGGYNVRFDIDVI-NKFLRRNGE 116

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
                 I    LDP + I  L + ++      N L + C  +GI +        +  +  
Sbjct: 117 KYLFSYIQATTLDPLQWIAALQLLKKIPVLKDNKLETWCNHFGIELKAHDSLEDIKATKA 176

Query: 167 LSDVYIKMMVG 177
           L+   + +M  
Sbjct: 177 LTKKMMLLMRE 187


>gi|119469142|ref|ZP_01612126.1| oligoribonuclease [Alteromonadales bacterium TW-7]
 gi|119447394|gb|EAW28662.1| oligoribonuclease [Alteromonadales bacterium TW-7]
          Length = 181

 Score = 39.1 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +  NK   I  D+E TGL+   D+I+EI  V
Sbjct: 1  MTINKSNLIWLDLEMTGLEPATDKILEIATV 31


>gi|262371112|ref|ZP_06064434.1| oligoribonuclease [Acinetobacter johnsonii SH046]
 gi|262313998|gb|EEY95043.1| oligoribonuclease [Acinetobacter johnsonii SH046]
          Length = 184

 Score = 39.1 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37
          M      R I  D+E TGLD+ ND+IIE+  +   D 
Sbjct: 1  MSSTADTRLIWIDLEMTGLDTDNDQIIEVATIVTDDN 37


>gi|257463061|ref|ZP_05627463.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium sp.
          D12]
          Length = 129

 Score = 39.1 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39
          M+ + FD ETTGL  ++  II++ A+  +D   
Sbjct: 1  MKILYFDTETTGLTYRS-TIIQLAAIIEIDGEV 32


>gi|187779653|ref|ZP_02996126.1| hypothetical protein CLOSPO_03249 [Clostridium sporogenes ATCC
          15579]
 gi|187773278|gb|EDU37080.1| hypothetical protein CLOSPO_03249 [Clostridium sporogenes ATCC
          15579]
          Length = 195

 Score = 39.1 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRT 43
          M+KI  D ETTGL+     II++   V  ++     R 
Sbjct: 1  MKKIFIDTETTGLEPG--EIIQLTYCVCDINSKGEERV 36


>gi|134046188|ref|YP_001097673.1| exonuclease, RNase T and DNA polymerase III [Methanococcus
           maripaludis C5]
 gi|132663813|gb|ABO35459.1| Exonuclease, RNase T and DNA polymerase III [Methanococcus
           maripaludis C5]
          Length = 189

 Score = 39.1 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 6/141 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ETTGL+     I +I  +   D     +   ++      +   +++    I 
Sbjct: 1   MK-VFLDTETTGLEPGQ--IAQISYIISDDDLNIQKAENIYFKVKSMEPKAQSVHGLSIE 57

Query: 67  D-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E L +  SF+   ++  D         I HN  FD  F+N+E  R   +         
Sbjct: 58  KLESLSEGKSFADHSTQILDDI--NQKILICHNVPFDYKFLNSEFVRCGIEYDPKKFCTM 115

Query: 126 TLSIARRKHPSSRNDLNSLCK 146
                    P+         +
Sbjct: 116 NHYTNLCGIPNPYRPGYKWPR 136


>gi|120555687|ref|YP_960038.1| oligoribonuclease [Marinobacter aquaeolei VT8]
 gi|166216266|sp|A1U4D2|ORN_MARAV RecName: Full=Oligoribonuclease
 gi|120325536|gb|ABM19851.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter
          aquaeolei VT8]
          Length = 180

 Score = 39.1 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R I  D+E TGLD + +RIIE+ ++
Sbjct: 6  RLIWIDLEMTGLDPEQERIIEMASI 30


>gi|327279889|ref|XP_003224688.1| PREDICTED: 3'-5' exoribonuclease 1-like [Anolis carolinensis]
          Length = 343

 Score = 39.1 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 66/190 (34%), Gaps = 18/190 (9%)

Query: 11  VFDIETT---G--LDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLH 63
           V D E T   G  L+     IIE   V +   + +   TFQ ++ P      S   + L 
Sbjct: 127 VIDFEATCEEGNQLEF-THEIIEFPIVLINTRTLEIEDTFQQYVKPVINPQLSDFCINLT 185

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRIN 114
           GI+ E +     F  +     D+  ++              + +    +       +   
Sbjct: 186 GISQERVDKADEFPKVLQSVIDWMKQKELGSRYSYAILTDGSWDMSKFLNIQCRVNRLRY 245

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                    I        K P ++  L+++ ++ G+    R  H  L DS  ++ + I+M
Sbjct: 246 PAFAKKWINIRKSYGNFYKVPRNQTKLSTMLEKLGMDYDGRP-HSGLDDSRNIAQIAIRM 304

Query: 175 MVGGSQINFG 184
           +  G ++   
Sbjct: 305 LQDGCELRVN 314


>gi|316972225|gb|EFV55912.1| three prime repair exonuclease 1 [Trichinella spiralis]
          Length = 361

 Score = 39.1 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34
          +  D+ETTGL  K   I EI  V +
Sbjct: 15 VFLDVETTGLVGKQPSITEIAVVAV 39


>gi|242239767|ref|YP_002987948.1| exonuclease RNase T and DNA polymerase III [Dickeya dadantii
           Ech703]
 gi|242131824|gb|ACS86126.1| Exonuclease RNase T and DNA polymerase III [Dickeya dadantii
           Ech703]
          Length = 181

 Score = 39.1 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 55/177 (31%), Gaps = 9/177 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ET+G       ++ IGA  +     T   +     P+G K+ PEA+ + G+   
Sbjct: 6   YVSVDVETSGPVPGIYSLLSIGACVVS--EPTQSIYLEL-QPDGLKHDPEAVAVTGLDLT 62

Query: 69  F------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                                     EQ   ++  NA FD  FIN    + +        
Sbjct: 63  KLESEGLPPQVAMLKLEQWLTQVCPAEQKVIFVGLNAPFDWSFINYYFHKYSGMNPFGFT 122

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            ID  +           +  S              H AL D+    +++  M+    
Sbjct: 123 AIDMKAYYMGLTGCLWKETKSSQMTARFNPISVPSHNALDDARFQGELFALMLAEAR 179


>gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
 gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
          Length = 898

 Score = 39.1 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 15/18 (83%)

Query: 10  IVFDIETTGLDSKNDRII 27
           + FD ETTGLD++ D+++
Sbjct: 330 VAFDTETTGLDTRTDKMV 347


>gi|120536881|ref|YP_956939.1| exonuclease, RNase T and DNA polymerase III [Marinobacter
          aquaeolei VT8]
 gi|120326715|gb|ABM21024.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter
          aquaeolei VT8]
          Length = 291

 Score = 39.1 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 10 IV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
          +V  D ETTG  + +D+IIE+G  +      T  
Sbjct: 47 VVWLDCETTGFQAGHDKIIELGLTKGYVDPITGE 80


>gi|118473234|ref|YP_888984.1| oligoribonuclease [Mycobacterium smegmatis str. MC2 155]
 gi|118174521|gb|ABK75417.1| oligoribonuclease [Mycobacterium smegmatis str. MC2 155]
          Length = 216

 Score = 39.1 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD K+DR+IEI  +    D +       V +  +    S     +  + 
Sbjct: 15 IDCEMTGLDLKSDRLIEIAVLVTDADLNILGDGLDVVIHADDESLSSMVDVVKQMH 70


>gi|121607325|ref|YP_995132.1| oligoribonuclease [Verminephrobacter eiseniae EF01-2]
 gi|121551965|gb|ABM56114.1| Exonuclease, RNase T and DNA polymerase III [Verminephrobacter
          eiseniae EF01-2]
          Length = 195

 Score = 39.1 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D E TGL    DR++EI  V
Sbjct: 25 LDCEMTGLTPDTDRLLEIAVV 45


>gi|330879830|gb|EGH13979.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 143

 Score = 39.1 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 5/113 (4%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E T    G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPVLTHFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            I    +      ++++ +F  + +   A  +   +  D      E +     
Sbjct: 64  HINQSSIDSAAPLTTVWPQFERWLSHHRARVLGWASWGDYDRQQLEEEWRYHR 116


>gi|256372239|ref|YP_003110063.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008823|gb|ACU54390.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 475

 Score = 39.1 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  + D+ETTG  S  D + E+  + + +        Q  +    R   P  + L GI++
Sbjct: 17  RFAILDVETTGAASGADELTEVAMMVVQEGRALA-HLQSLVH-TDRPIPPAIVALTGISN 74

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           E + D PS  ++               + HN +FD  F
Sbjct: 75  ELVADAPSARTVIERTARLLEG--TVMVGHNVRFDRSF 110


>gi|149197758|ref|ZP_01874808.1| oligoribonuclease [Lentisphaera araneosa HTCC2155]
 gi|149139328|gb|EDM27731.1| oligoribonuclease [Lentisphaera araneosa HTCC2155]
          Length = 184

 Score = 39.1 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 13 DIETTGLDSKNDRIIEIG 30
          D+E TGL+  ND+IIEI 
Sbjct: 11 DLEMTGLNPDNDKIIEIA 28


>gi|114623463|ref|XP_001136735.1| PREDICTED: hypothetical protein LOC463978 isoform 1 [Pan
           troglodytes]
          Length = 349

 Score = 39.1 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T   G   +    IIE   V L  ++     TFQ ++ P      S   + L G
Sbjct: 132 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTG 191

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQN---------AEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +  +  D+   +              + +    +       +    
Sbjct: 192 ITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYP 251

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++M+
Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HCGLDDSKNIARIAVRML 310

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 311 QDGCELRIN 319


>gi|119715587|ref|YP_922552.1| oligoribonuclease [Nocardioides sp. JS614]
 gi|119536248|gb|ABL80865.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
          JS614]
          Length = 222

 Score = 39.1 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          R +  D E TGLD + D +IE+ A V   D +       + + P           +  + 
Sbjct: 4  RLVWIDCEMTGLDLRADALIEVAALVTDFDLNVLGSGVDLIVKPPAEALDQMNEFVRDMH 63


>gi|53728767|ref|ZP_00135217.2| COG1949: Oligoribonuclease (3'->5' exoribonuclease)
          [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208604|ref|YP_001053829.1| oligoribonuclease [Actinobacillus pleuropneumoniae L20]
 gi|165976560|ref|YP_001652153.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 3 str.
          JL03]
 gi|190150461|ref|YP_001968986.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 7 str.
          AP76]
 gi|303250117|ref|ZP_07336319.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str.
          Femo]
 gi|303253291|ref|ZP_07339440.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str.
          4226]
 gi|307246049|ref|ZP_07528131.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 1 str.
          4074]
 gi|307248157|ref|ZP_07530185.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str.
          S1536]
 gi|307250390|ref|ZP_07532338.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 4 str.
          M62]
 gi|307252772|ref|ZP_07534663.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str.
          Femo]
 gi|307255031|ref|ZP_07536849.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 9 str.
          CVJ13261]
 gi|307257187|ref|ZP_07538959.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 10
          str. D13039]
 gi|307259467|ref|ZP_07541192.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 11
          str. 56153]
 gi|307261616|ref|ZP_07543284.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 12
          str. 1096]
 gi|307263805|ref|ZP_07545411.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 13
          str. N273]
 gi|166215747|sp|A3N1D8|ORN_ACTP2 RecName: Full=Oligoribonuclease
 gi|126097396|gb|ABN74224.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 5b
          str. L20]
 gi|165876661|gb|ABY69709.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 3 str.
          JL03]
 gi|189915592|gb|ACE61844.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 7 str.
          AP76]
 gi|302647973|gb|EFL78180.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str.
          4226]
 gi|302651180|gb|EFL81334.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str.
          Femo]
 gi|306852984|gb|EFM85207.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 1 str.
          4074]
 gi|306855334|gb|EFM87509.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str.
          S1536]
 gi|306857600|gb|EFM89708.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 4 str.
          M62]
 gi|306859804|gb|EFM91826.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str.
          Femo]
 gi|306861904|gb|EFM93880.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 9 str.
          CVJ13261]
 gi|306864349|gb|EFM96260.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 10
          str. D13039]
 gi|306866403|gb|EFM98266.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 11
          str. 56153]
 gi|306868739|gb|EFN00548.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 12
          str. 1096]
 gi|306870926|gb|EFN02664.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 13
          str. N273]
          Length = 184

 Score = 39.1 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M + +    I  D+E TGLD + +RIIE+ 
Sbjct: 1  MSKLDNQNLIWIDLEMTGLDPEKERIIEVA 30


>gi|296170420|ref|ZP_06852008.1| oligoribonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894891|gb|EFG74612.1| oligoribonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 215

 Score = 39.1 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)

Query: 7  MR-KIV-FDIETTGLDSKNDRIIEIGAV 32
          MR ++V  D E TGLD   D++IEI A+
Sbjct: 1  MRDELVWIDCEMTGLDLGTDKLIEIAAL 28


>gi|322788644|gb|EFZ14245.1| hypothetical protein SINV_00413 [Solenopsis invicta]
          Length = 189

 Score = 39.1 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 9  KIV-FDIETTGLDSKNDRIIEIGAV 32
           IV  D+E TGLD   D I+EI  +
Sbjct: 20 YIVWIDLEMTGLDVDKDHILEIACL 44


>gi|254439757|ref|ZP_05053251.1| exonuclease superfamily [Octadecabacter antarcticus 307]
 gi|198255203|gb|EDY79517.1| exonuclease superfamily [Octadecabacter antarcticus 307]
          Length = 203

 Score = 39.1 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 7/127 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I  D+ET G    N  I +IG   + +     +T+ VF+ P      P   +LHGI+ 
Sbjct: 17  RFIALDVETAG--KTNGGICQIGLCFVSETGAV-QTYSVFIDPE-EPFEPFNTELHGISA 72

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +    +F +++   +D  N      +  ++ FD   + +   R +   +         
Sbjct: 73  DTVAGAGTFPTVYGALFDLLNAH---SLVQHSTFDEKALTSACARYDLPMITSHWTNSVS 129

Query: 128 SIARRKH 134
                  
Sbjct: 130 VARHAWP 136


>gi|146092931|ref|XP_001466577.1| hypothetical protein [Leishmania infantum]
 gi|134070940|emb|CAM69616.1| conserved hypothetical protein [Leishmania infantum JPCM5]
 gi|322500705|emb|CBZ35782.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 405

 Score = 39.1 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 62/188 (32%), Gaps = 14/188 (7%)

Query: 10  IVFDIETTGL-DSKN--DRIIEIGAVELL---DYSKTNRTFQVFLCP-NGRKNSPEALKL 62
           IV D+E T   +S+N    +IEI  V +          R+F  F+ P    + +P   +L
Sbjct: 77  IVVDVEATCEQNSRNYPHEVIEIPGVLIDVRTGQVDRARSFHTFVKPWRNSRLTPFCTQL 136

Query: 63  HGITDEFLKDKPS----FSSIFSEFWDFFNEQNAEWIAHNAKFDVG---FINAELQRINK 115
            GIT E +   PS           + +          A +  +D       +  L+    
Sbjct: 137 TGITQEVVDAAPSITEAIQLFEKWYRETIPRGAKTIFAADGPWDFKNFIHEHHILRDHVG 196

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P      +D  +                  R          H    D++ ++ + + MM
Sbjct: 197 FPSIFYEYLDIRTTFAHHLNHGVPIKLDAMLRKMNLRFDGRPHNGFDDAYNIARLAVAMM 256

Query: 176 VGGSQINF 183
             G  ++F
Sbjct: 257 KAGCVLDF 264


>gi|229047208|ref|NP_935870.2| oligoribonuclease [Vibrio vulnificus YJ016]
 gi|229220645|ref|NP_760214.2| oligoribonuclease [Vibrio vulnificus CMCP6]
 gi|320155081|ref|YP_004187460.1| 3'-to-5' oligoribonuclease [Vibrio vulnificus MO6-24/O]
 gi|29611786|sp|Q8DCV6|ORN_VIBVU RecName: Full=Oligoribonuclease
 gi|41017432|sp|Q7MGZ7|ORN_VIBVY RecName: Full=Oligoribonuclease
 gi|319930393|gb|ADV85257.1| 3'-to-5' oligoribonuclease (orn) [Vibrio vulnificus MO6-24/O]
 gi|319999184|gb|AAO09741.2| Oligoribonuclease [Vibrio vulnificus CMCP6]
          Length = 181

 Score = 39.1 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD    +IIEI ++
Sbjct: 11 IDLEMTGLDPDVHKIIEIASI 31


>gi|160872136|ref|ZP_02062268.1| oligoribonuclease Orn [Rickettsiella grylli]
 gi|159120935|gb|EDP46273.1| oligoribonuclease Orn [Rickettsiella grylli]
          Length = 181

 Score = 39.1 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 6/41 (14%)

Query: 12 FDIETTGLDSKNDRIIEIGAV------ELLDYSKTNRTFQV 46
           D+E TGLD+  D+IIEI  +      E+++       FQ 
Sbjct: 11 IDLEMTGLDTNQDKIIEIATIITDSQLEIIEEGPVFAIFQS 51


>gi|156933577|ref|YP_001437493.1| exodeoxyribonuclease X [Cronobacter sakazakii ATCC BAA-894]
 gi|156531831|gb|ABU76657.1| hypothetical protein ESA_01397 [Cronobacter sakazakii ATCC BAA-894]
          Length = 220

 Score = 39.1 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 17/165 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      ++E+ +V+++D +         + P+ R  S +A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGVVEVASVDIIDGAIV-NPMSDLVRPD-RPISHQAMAIHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   +       +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPYIEEVIPRYH-----GSQWYVAHNASFDRKVLPEMPGEWICT-------VKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 S   L    K    T      H AL D ++ + + +++M
Sbjct: 107 WPGIRYSNMGLYKSLKLQVETPEGLHHHRALFDCYITAALLLEIM 151


>gi|119474830|ref|ZP_01615183.1| oligoribonuclease [marine gamma proteobacterium HTCC2143]
 gi|119451033|gb|EAW32266.1| oligoribonuclease [marine gamma proteobacterium HTCC2143]
          Length = 195

 Score = 39.1 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+   D IIEI 
Sbjct: 19 IDLEMTGLEPATDHIIEIA 37


>gi|283782956|ref|YP_003373710.1| exonuclease [Gardnerella vaginalis 409-05]
 gi|283441223|gb|ADB13689.1| exonuclease [Gardnerella vaginalis 409-05]
          Length = 259

 Score = 39.1 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 7/122 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQV-FLCPNGRKNSPEAL---KLHGI 65
           FD ETTG +   D I+    + L +     T        + P+   N   +         
Sbjct: 32  FDTETTGANIGKDAIVS-ATLVLRNPELAHTGDVVSTWLINPHQPMNPKASEVNGFTDEY 90

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E   +        +        +N   +A+NA FD+  +  +L+  +   L+      
Sbjct: 91  LKEHGGEPEEELEFLARAVSMAQAKNIPLLAYNAPFDIAMLRHDLKHWHLTALEERATCP 150

Query: 126 TL 127
             
Sbjct: 151 IH 152


>gi|260598318|ref|YP_003210889.1| exodeoxyribonuclease X [Cronobacter turicensis z3032]
 gi|260217495|emb|CBA31655.1| Exodeoxyribonuclease 10 [Cronobacter turicensis z3032]
          Length = 220

 Score = 39.1 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 64/165 (38%), Gaps = 17/165 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      ++E+ +V+++D +         + P+ R  S +A+ +H IT+  +
Sbjct: 4   IIDTETCGL---QGGVVEVASVDIIDGAIV-NPMSDLVRPD-RPISHQAMAIHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   +       +  ++AHNA FD   +                 +      
Sbjct: 59  ADKPYIEDVIPRYH-----GSPWYVAHNASFDRKVLPEMPGEWICT-------VKLARRL 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 S   L    K    T +    H AL D ++ + + +++M
Sbjct: 107 WPGIRYSNMGLYKSLKLQVETPAGLHHHRALFDCYITAALLLEIM 151


>gi|296283564|ref|ZP_06861562.1| exonuclease, RNase T and DNA polymerase III [Citromicrobium
           bathyomarinum JL354]
          Length = 180

 Score = 39.1 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI--- 65
            I  D+ET+G       ++ IGA  +    + ++ F+  L P   +  P+AL++ G+   
Sbjct: 8   FISVDVETSGPIPGEFSLLSIGACAVD---RPDQHFECLLKPITDRADPKALEVSGLSLE 64

Query: 66  ---TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                     +                    ++  NA FD  F+N    R  +       
Sbjct: 65  ILQHTGLEPVQAMERFEIWVGQMAGETGTPIFVGFNAPFDWSFVNYYFHRFLRRNPFGFT 124

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +D  +       +S     S   R  +  +    H  L D+   ++++
Sbjct: 125 ALDIKAYYMGSAGTSWEATRSSKMRKQLGAALEGDHDPLNDALAQAELF 173


>gi|282864742|ref|ZP_06273796.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp.
          ACTE]
 gi|282560167|gb|EFB65715.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp.
          ACTE]
          Length = 243

 Score = 39.1 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELL 35
          FD+ETTG D    RI+    V + 
Sbjct: 11 FDLETTGTDPLEARIVTAAVVAVE 34


>gi|302877099|ref|YP_003845732.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|307687794|ref|ZP_07630240.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|302579956|gb|ADL53968.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
          Length = 255

 Score = 39.1 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 21/183 (11%)

Query: 7   MRKIVFDIETTGLDSKN---------------DRIIEIGAVELLDYSKTNRTFQVFLCPN 51
           M  I++D+E    + +                  II+IGA++L +  +T   F   + P 
Sbjct: 1   MNYIIYDLE---FNQEYLHSSEVQSANNSSLPFEIIQIGALKLTENFETVANFNSLIKPT 57

Query: 52  GRK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
                 P    L  I D  +    +F  ++ +F +F                   +    
Sbjct: 58  VYPIIHPYVESLTKINDSMVSSCETFPQVYEDFLEFIGNDETTLCVWGISDIKELLRNIK 117

Query: 111 QRINKDPLDPSRIIDTLSIARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                        ID    A +    P+      S         ++   H A  D++  +
Sbjct: 118 FYNLPSSTISKNYIDIQKYASKHLRTPNKSRIGLSTAISLLNIPTNGQFHDAFNDAYYTT 177

Query: 169 DVY 171
           +V+
Sbjct: 178 EVF 180


>gi|322835471|ref|YP_004215497.1| exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602]
 gi|321170672|gb|ADW76370.1| Exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602]
          Length = 220

 Score = 39.1 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 73/210 (34%), Gaps = 22/210 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V++ D           + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGL---QGGVVEVASVDIEDGKIV-NPMSDLVRPD-RPISHQAMAIHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I   +       +  ++AHNA FD   +             P   I T+ ++
Sbjct: 59  ADKPWIEEIIPRYH-----GSQYYVAHNASFDQRMLPD----------MPGDWICTVKLS 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           RR  P  +    +L K   + ++  +                 ++    +  +     E 
Sbjct: 104 RRLWPGIKYSNMALYKSLKLDVATPADLHHHRALFDCYITAALLIRIMDESGW--TPEEM 161

Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
                    V  +   K        I +++
Sbjct: 162 VTITGRPALVSTMMFGKYRGRKIAEIAEDD 191


>gi|297682312|ref|XP_002818868.1| PREDICTED: 3'-5' exoribonuclease 1-like [Pongo abelii]
          Length = 349

 Score = 39.1 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T   G   +    IIE   V L  ++ +   TFQ ++ P      S   + L G
Sbjct: 132 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTG 191

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +  +  D+   +              + +    +       +    
Sbjct: 192 ITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRLKYP 251

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++M+
Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HCGLDDSKNIARIAVRML 310

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 311 QDGCELRIN 319


>gi|254453316|ref|ZP_05066753.1| exonuclease [Octadecabacter antarcticus 238]
 gi|198267722|gb|EDY91992.1| exonuclease [Octadecabacter antarcticus 238]
          Length = 206

 Score = 39.1 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I  D+ET G       I +IG   + +     +T+ V + P          +LHGI+ 
Sbjct: 20  RFIALDVETAGKTIGG--ICQIGLCFVSNTGAV-QTYSVLIDPE-EPFEQFNTELHGISA 75

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           + +     F  +++  +D  N  N   +  ++ FD   + ++  R     +    
Sbjct: 76  DTVAGAGIFPMVYAALFDLLNTHN---LIQHSTFDEKALTSDCARYGLPMITSHW 127


>gi|257461276|ref|ZP_05626373.1| DNA polymerase III subunit epsilon [Campylobacter gracilis RM3268]
 gi|257441304|gb|EEV16450.1| DNA polymerase III subunit epsilon [Campylobacter gracilis RM3268]
          Length = 268

 Score = 39.1 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 8/115 (6%)

Query: 11  VFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             DIET G L   N +IIEIGA++     + +R F+ F+            +L GI  + 
Sbjct: 75  FVDIETNGGLS--NGQIIEIGAIKTRGTQELDR-FESFV--YAPVVPENITELTGICADD 129

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           L   P  +S+   F       ++ ++AHN KFD GFI+A LQ+     L   R+ 
Sbjct: 130 LVGAPPLASVLERF--RLFLGDSVFVAHNVKFDYGFIDASLQKCGFGMLLNRRLC 182


>gi|325508392|gb|ADZ20028.1| putative elongation subunit of DNA-dependent DNA polymerase
           [Clostridium acetobutylicum EA 2018]
          Length = 265

 Score = 39.1 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           ++++  M+  + FDIETTG D + D I  I IG  ++ D     + F   L         
Sbjct: 16  IVKEYSMKSMVYFDIETTGFDREQDNIILISIGYYDVKDTFHIKQYFAEDLNEEKYVLEN 75

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWD 85
               +         +  +F   F +   
Sbjct: 76  LKGDIENFNMWCSYNGKAFDEPFIQSRM 103


>gi|227499563|ref|ZP_03929670.1| conserved hypothetical protein [Anaerococcus tetradius ATCC
          35098]
 gi|227218322|gb|EEI83576.1| conserved hypothetical protein [Anaerococcus tetradius ATCC
          35098]
          Length = 301

 Score = 39.1 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 25/32 (78%), Gaps = 3/32 (9%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVE 33
          +++N+M   + DIETTGLDS+ D+++ +G +E
Sbjct: 13 LKENEM---ILDIETTGLDSRVDKLVLLGLIE 41


>gi|307822745|ref|ZP_07652976.1| Exonuclease RNase T and DNA polymerase III [Methylobacter
          tundripaludum SV96]
 gi|307736349|gb|EFO07195.1| Exonuclease RNase T and DNA polymerase III [Methylobacter
          tundripaludum SV96]
          Length = 181

 Score = 39.1 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD  ND IIEI 
Sbjct: 11 IDLEMTGLDPDNDLIIEIA 29


>gi|15895183|ref|NP_348532.1| ribonuclease D [Clostridium acetobutylicum ATCC 824]
 gi|15024889|gb|AAK79872.1|AE007698_6 Ribonuclease D [Clostridium acetobutylicum ATCC 824]
 gi|325509325|gb|ADZ20961.1| Ribonuclease D [Clostridium acetobutylicum EA 2018]
          Length = 205

 Score = 39.1 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 8  RKIVFDIETTGLDSKNDR--IIEIGA 31
          + I  D ETTGLD   D+  +I+I A
Sbjct: 24 KYIAIDTETTGLDPLKDKLCLIQICA 49


>gi|330946499|gb|EGH47535.1| exonuclease [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 137

 Score = 39.1 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 5/130 (3%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E TT   G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I    +      ++++ +F  + +   A  +   +       N +              
Sbjct: 64  HINQSSIDSAAPLTTVWPQFERWLSHHRARIVGWASWGTTIVSNWKRNGATITSTVRCPA 123

Query: 124 IDTLSIARRK 133
             T    +R 
Sbjct: 124 CRTSISKQRF 133


>gi|294789770|ref|ZP_06755000.1| oligoribonuclease [Simonsiella muelleri ATCC 29453]
 gi|294482276|gb|EFG29973.1| oligoribonuclease [Simonsiella muelleri ATCC 29453]
          Length = 184

 Score = 39.1 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+  +D+IIEI  +
Sbjct: 10 LDMEMTGLNPDSDKIIEIAMI 30


>gi|212716446|ref|ZP_03324574.1| hypothetical protein BIFCAT_01370 [Bifidobacterium catenulatum
          DSM 16992]
 gi|212660699|gb|EEB21274.1| hypothetical protein BIFCAT_01370 [Bifidobacterium catenulatum
          DSM 16992]
          Length = 216

 Score = 39.1 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50
          R I  D E TGLD  +D + EI  V    D +  +      + P
Sbjct: 16 RLIWIDCEMTGLDIFHDELCEISVVPTDFDLNVLDEGIDFVIKP 59


>gi|50955048|ref|YP_062336.1| oligoribonuclease [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|81826639|sp|Q6AEG5|ORN_LEIXX RecName: Full=Oligoribonuclease
 gi|50951530|gb|AAT89231.1| oligoribonuclease [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 207

 Score = 39.1 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51
          R +  D E TGLD   D ++EI  V    D +  +    + + P+
Sbjct: 7  RLVWIDCEMTGLDLAVDELVEIAVVITDFDLNVLDPGLSIVIKPD 51


>gi|115396528|ref|XP_001213903.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114193472|gb|EAU35172.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 186

 Score = 39.1 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 12 FDIETTGLDSKNDRIIEIGA 31
           D E TGLD + D+I++I  
Sbjct: 13 IDCEMTGLDPETDQILQICC 32


>gi|21355135|ref|NP_651184.1| CG10214 [Drosophila melanogaster]
 gi|11133808|sp|Q9VCI0|ORN_DROME RecName: Full=Probable oligoribonuclease
 gi|7301049|gb|AAF56185.1| CG10214 [Drosophila melanogaster]
 gi|16769160|gb|AAL28799.1| LD18757p [Drosophila melanogaster]
 gi|220942706|gb|ACL83896.1| CG10214-PA [synthetic construct]
 gi|220952944|gb|ACL89015.1| CG10214-PA [synthetic construct]
          Length = 211

 Score = 39.1 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
          D+E TGLD + D+I+E+  +                 P    N P+ +            
Sbjct: 42 DLEMTGLDIEKDKILEVACIITDQDLNVKSE-----GPCFAINHPQEVYDSMNEWCMKHH 96

Query: 73 K 73
           
Sbjct: 97 Y 97


>gi|256390707|ref|YP_003112271.1| exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
 gi|256356933|gb|ACU70430.1| Exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
          Length = 295

 Score = 39.1 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG D K+ RI+    V     +         + P G +   EA  +HGIT E+ +
Sbjct: 75  FDTETTGRDPKSVRIVSAALV-----TSDGAEKAFLIDP-GVEIPAEATAIHGITTEYAR 128

Query: 72  DK 73
           + 
Sbjct: 129 EH 130


>gi|52842945|ref|YP_096744.1| oligoribonuclease [Legionella pneumophila subsp. pneumophila str.
          Philadelphia 1]
 gi|54295579|ref|YP_127994.1| oligoribonuclease [Legionella pneumophila str. Lens]
 gi|54298733|ref|YP_125102.1| oligoribonuclease [Legionella pneumophila str. Paris]
 gi|148358519|ref|YP_001249726.1| oligoribonuclease [Legionella pneumophila str. Corby]
 gi|296108393|ref|YP_003620094.1| putative ACR [Legionella pneumophila 2300/99 Alcoy]
 gi|59797992|sp|Q5WT59|ORN_LEGPL RecName: Full=Oligoribonuclease
 gi|59797993|sp|Q5X1E6|ORN_LEGPA RecName: Full=Oligoribonuclease
 gi|59797999|sp|Q5ZRY0|ORN_LEGPH RecName: Full=Oligoribonuclease
 gi|166216265|sp|A5IAI0|ORN_LEGPC RecName: Full=Oligoribonuclease
 gi|52630056|gb|AAU28797.1| oligoribonuclease [Legionella pneumophila subsp. pneumophila str.
          Philadelphia 1]
 gi|53752518|emb|CAH13950.1| hypothetical protein lpp2797 [Legionella pneumophila str. Paris]
 gi|53755411|emb|CAH16907.1| hypothetical protein lpl2666 [Legionella pneumophila str. Lens]
 gi|148280292|gb|ABQ54380.1| oligoribonuclease [Legionella pneumophila str. Corby]
 gi|295650295|gb|ADG26142.1| putative ACR [Legionella pneumophila 2300/99 Alcoy]
 gi|307611619|emb|CBX01303.1| hypothetical protein LPW_30001 [Legionella pneumophila 130b]
          Length = 187

 Score = 39.1 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          KN    I  D+E TGL+ + DRIIE+ 
Sbjct: 2  KNNQNLIWIDLEMTGLEPEQDRIIEMA 28


>gi|56461520|ref|YP_156801.1| EXOIII family exonuclease [Idiomarina loihiensis L2TR]
 gi|56180530|gb|AAV83252.1| EXOIII family exonuclease [Idiomarina loihiensis L2TR]
          Length = 192

 Score = 39.1 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 44/136 (32%), Gaps = 12/136 (8%)

Query: 9   KIVFDIETT-------GLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-S 56
            ++ D+E T       GLD K       IIE G V   D           + P    N S
Sbjct: 12  YLIVDLEATCWDGNVEGLDRKQTVDDMEIIEFGCVIAEDNGTVRDYRSFMVRPQSHPNLS 71

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
               +L  I    +   P + S+  E   +      E       +D   I+AE +R N  
Sbjct: 72  EFCTQLTSIAQSDVDAAPVYQSVVPEIDQWLKNYKLEGWGSWGNYDKNQISAEQRRHNLA 131

Query: 117 PLDPSRIIDTLSIARR 132
           P   S     +    R
Sbjct: 132 PEFFSLSHMNIKQEWR 147


>gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
 gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
          Length = 926

 Score = 39.1 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 67/233 (28%), Gaps = 27/233 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIG-AVE--------------LLDYSKTNRTFQVFLC 49
           N  + +  D ETTGLD   D II I  A+               +      +  F+    
Sbjct: 353 NSKKLVCVDFETTGLDVFKDTIIGISFAIRSNEAFYLDVSGRTNIDKDKCIDMVFETLAK 412

Query: 50  PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
            + +           I      +     +I   F + + +        N       ++  
Sbjct: 413 EDIKV----------IGHNLKYEYKMMRAINKSFGNMYFDTMVAAYLINPTRGRYNMDDL 462

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                         I   +         ++ +   C+   IT         LL +H L +
Sbjct: 463 AIAYLSYNTIKYSDITDNAKKTLLDVPLKDVVEYACEDADITFRFYECFAPLLKTHNLEE 522

Query: 170 VY--IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           ++  I+M +     +  F        K +  +    SLL++ K        EE
Sbjct: 523 LFFNIEMPLVSVLADMEFDGVYISSEKMKALSDEYSSLLEKTKKKIYAEAGEE 575


>gi|148361305|ref|YP_001252512.1| ribonuclease T [Legionella pneumophila str. Corby]
 gi|296108645|ref|YP_003620346.1| ribonuclease T [Legionella pneumophila 2300/99 Alcoy]
 gi|148283078|gb|ABQ57166.1| ribonuclease T [Legionella pneumophila str. Corby]
 gi|295650547|gb|ADG26394.1| ribonuclease T [Legionella pneumophila 2300/99 Alcoy]
          Length = 207

 Score = 39.1 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDY-----SKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D+ET G+D + + ++E+  V L         K +  F+  L   G +   ++L+ + 
Sbjct: 22  VVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKESSYFEHILPFPGAELDQKSLEFNQ 81

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                        +       Q A  + HNA FD+ FI A ++R    
Sbjct: 82  IDPYQPLRFAVDEQIALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIKAAIKRTGIK 141

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L    +  G+    +  H A+ D+   +D++  M+ 
Sbjct: 142 SP-FHAFTCFDTATLAGLIFGETVLAKAVQTAGLHFDSQEAHSAIYDAEKTADLFCLMIN 200

Query: 177 GGSQINF 183
               +N 
Sbjct: 201 KWRMLNI 207


>gi|54295804|ref|YP_128219.1| ribonuclease T [Legionella pneumophila str. Lens]
 gi|53755636|emb|CAH17138.1| ribonuclease T [Legionella pneumophila str. Lens]
 gi|307611851|emb|CBX01565.1| ribonuclease T [Legionella pneumophila 130b]
          Length = 207

 Score = 39.1 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDY-----SKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D+ET G+D + + ++E+  V L         K +  F+  L   G +   ++L+ + 
Sbjct: 22  VVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKESSYFEHILPFPGAELDQKSLEFNQ 81

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                        +       Q A  + HNA FD+ FI A ++R    
Sbjct: 82  IDPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIKAAIKRTGIK 141

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L    +  G+    +  H A+ D+   +D++  M+ 
Sbjct: 142 SP-FHAFTCFDTATLAGLIFGETVLAKAVQAAGLHFDSQEAHSAIYDAEKTADLFCLMIN 200

Query: 177 GGSQINF 183
               +N 
Sbjct: 201 KWRMLNI 207


>gi|323223540|gb|EGA07861.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB110209-0055]
          Length = 60

 Score = 39.1 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
          + D ET GL      I+EI +V+++D +         + P+           
Sbjct: 4  IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPDRPITPQAMAIH 51


>gi|15894265|ref|NP_347614.1| elongation subunit of DNA-dependent DNA polymerase [Clostridium
           acetobutylicum ATCC 824]
 gi|15023885|gb|AAK78954.1|AE007614_2 Possible elongation subunit of DNA-dependent DNA polymerase
           [Clostridium acetobutylicum ATCC 824]
          Length = 274

 Score = 39.1 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           ++++  M+  + FDIETTG D + D I  I IG  ++ D     + F   L         
Sbjct: 25  IVKEYSMKSMVYFDIETTGFDREQDNIILISIGYYDVKDTFHIKQYFAEDLNEEKYVLEN 84

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWD 85
               +         +  +F   F +   
Sbjct: 85  LKGDIENFNMWCSYNGKAFDEPFIQSRM 112


>gi|314923751|gb|EFS87582.1| exonuclease [Propionibacterium acnes HL001PA1]
 gi|314966126|gb|EFT10225.1| exonuclease [Propionibacterium acnes HL082PA2]
 gi|314982038|gb|EFT26131.1| exonuclease [Propionibacterium acnes HL110PA3]
 gi|315090803|gb|EFT62779.1| exonuclease [Propionibacterium acnes HL110PA4]
 gi|315095017|gb|EFT66993.1| exonuclease [Propionibacterium acnes HL060PA1]
 gi|315104354|gb|EFT76330.1| exonuclease [Propionibacterium acnes HL050PA2]
 gi|327328205|gb|EGE69974.1| oligoribonuclease [Propionibacterium acnes HL103PA1]
          Length = 202

 Score = 39.1 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD  +D +IE+ A+              V + P  +        +  + 
Sbjct: 5  IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPESQWLDHMNDFVRDMH 60


>gi|298369765|ref|ZP_06981082.1| oligoribonuclease [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282322|gb|EFI23810.1| oligoribonuclease [Neisseria sp. oral taxon 014 str. F0314]
          Length = 185

 Score = 39.1 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD + +RIIE+  +
Sbjct: 11 LDMEMTGLDPERERIIEVAMI 31


>gi|71275767|ref|ZP_00652051.1| Exodeoxyribonuclease I [Xylella fastidiosa Dixon]
 gi|71902145|ref|ZP_00684172.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
 gi|170730127|ref|YP_001775560.1| exonuclease I [Xylella fastidiosa M12]
 gi|71163345|gb|EAO13063.1| Exodeoxyribonuclease I [Xylella fastidiosa Dixon]
 gi|71728093|gb|EAO30295.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
 gi|167964920|gb|ACA11930.1| Exodeoxyribonuclease I [Xylella fastidiosa M12]
          Length = 488

 Score = 39.1 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 43/155 (27%), Gaps = 6/155 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65
            + +D+ET G D +  RI +  AV      +         + P      +    L     
Sbjct: 15  FLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGIT 74

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                ++  S  + F+       + +   + +N    + F +  ++             +
Sbjct: 75  PQHAQREGISEVAAFAHITMQMTQPHTCSLGYN---TLRFDDEFIRYGLFRHFYDPYERE 131

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
             +   R        L    +  GI    R     
Sbjct: 132 WRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAP 166


>gi|328791793|ref|XP_624063.2| PREDICTED: probable oligoribonuclease-like [Apis mellifera]
          Length = 144

 Score = 39.1 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 5  NKMRKIV-FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
          NK   IV  D E TGL  + D I+EI   +   D +  +  F + +              
Sbjct: 4  NKHNCIVWIDTELTGLQIETDTILEIACLITDEDLNIVSEEFNIVINQPDVVLEHMNEWC 63

Query: 63 HGIT 66
              
Sbjct: 64 MNFH 67


>gi|327307324|ref|XP_003238353.1| RNA exonuclease Rex2 [Trichophyton rubrum CBS 118892]
 gi|326458609|gb|EGD84062.1| RNA exonuclease Rex2 [Trichophyton rubrum CBS 118892]
          Length = 188

 Score = 39.1 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 6/59 (10%)

Query: 12 FDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD  ND I++I      V+L         F+  +                  
Sbjct: 13 IDCEMTGLDPANDHILQICCYITDVQLNLLEPEG--FEAIVHQPQDVLDRMNAWCIDTH 69


>gi|322488730|emb|CBZ23977.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 405

 Score = 39.1 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 72/242 (29%), Gaps = 29/242 (11%)

Query: 10  IVFDIETTGL-DSKN--DRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKN-SPEALKL 62
           IV D+E T   ++++    +IEI  V +          R+F  F+ P      +P   +L
Sbjct: 77  IVVDVEATCEQNARSYPHEVIEIPGVLIDVRTGQVDRARSFHTFVKPWRNPRLTPFCTQL 136

Query: 63  HGITDEFLKDKPS----FSSIFSEFWDFFNEQNAEWIAHNAKFDVG---FINAELQRINK 115
            GIT   +   PS           + +          A +  +D       +  L+    
Sbjct: 137 TGITQVVVDAAPSITEAIQLFEKWYRETIPRGAKTIFAADGPWDFKNFIHEHHILRDHVS 196

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P      +D  +    +             R          H    D++ ++ + + MM
Sbjct: 197 FPSIFYEYLDIRTTFAHRLNHGVPIKLDAMLRKMNLRFDGRPHNGFDDAYNIARLAVAMM 256

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH--DKTIQTLGK 233
             G  ++F      D  +      VP                 EE   H     ++ + K
Sbjct: 257 KAGCVLDFVIAIPLDDAYHYHLDGVPLYRR-------------EEGSGHVDRDVVEDIAK 303

Query: 234 NA 235
             
Sbjct: 304 KC 305


>gi|306836447|ref|ZP_07469422.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
 gi|304567666|gb|EFM43256.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
          Length = 454

 Score = 39.1 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D+ET   +     I +IGAV   D  +T ++++     P     +   + +HGIT 
Sbjct: 110 FVAVDVET--ANDNWGSICQIGAVRYRDGGETASQSWLCTPPPGLEHFAEINISIHGITA 167

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
             ++    F++  +E +DF        +AHN +FD  
Sbjct: 168 ADVEGAMPFATAAAELFDFIGS--DVIVAHNVQFDSS 202


>gi|227503316|ref|ZP_03933365.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49725]
 gi|227075819|gb|EEI13782.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49725]
          Length = 470

 Score = 39.1 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D+ET   +     I +IGAV   D  +T ++++     P     +   + +HGIT 
Sbjct: 126 FVAVDVET--ANDNWGSICQIGAVRYRDGGETASQSWLCTPPPGLEHFAEINISIHGITA 183

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
             ++    F++  +E +DF        +AHN +FD  
Sbjct: 184 ADVEGAMPFATAAAELFDFIGS--DVIVAHNVQFDSS 218


>gi|225350877|ref|ZP_03741900.1| hypothetical protein BIFPSEUDO_02451 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|225158333|gb|EEG71575.1| hypothetical protein BIFPSEUDO_02451 [Bifidobacterium
          pseudocatenulatum DSM 20438]
          Length = 216

 Score = 39.1 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50
          R I  D E TGLD  +D + EI  V    D +  +      + P
Sbjct: 16 RLIWIDCEMTGLDIFHDELCEISVVPTDFDLNVLDEGIDFVIKP 59


>gi|182419685|ref|ZP_02950926.1| exonuclease family [Clostridium butyricum 5521]
 gi|237665882|ref|ZP_04525870.1| exonuclease family [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376422|gb|EDT74003.1| exonuclease family [Clostridium butyricum 5521]
 gi|237658829|gb|EEP56381.1| exonuclease family [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 309

 Score = 39.1 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 62/189 (32%), Gaps = 22/189 (11%)

Query: 7   MRKIVFDIE-------------TTGLD---SKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50
           M  IV D+E             T  L+      D +++IGAV+L +  K   +F+ ++ P
Sbjct: 1   MIFIVLDLEYNHIDNRNKLLSNTLHLNRPSYMTDEVLQIGAVKLDENLKYISSFKRYIKP 60

Query: 51  NG------RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
                   R      + ++ I    +K K +         +   +       ++    + 
Sbjct: 61  QFLVTLNKRVQDLIQIDMNYIKTNGVKFKRAVYEFMDFIGENLKDVVIITWGYSDWIILN 120

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
                 +  N +  D   I     +  ++       L  + ++Y I+      H A  D+
Sbjct: 121 KNFEANKIKNINLNDAYYIDLQRVVMNKEGIKIDPSLKGIAEKYNISACRDKYHDAYYDA 180

Query: 165 HLLSDVYIK 173
            +   +   
Sbjct: 181 VITKSILQN 189


>gi|120405054|ref|YP_954883.1| oligoribonuclease [Mycobacterium vanbaalenii PYR-1]
 gi|119957872|gb|ABM14877.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium
          vanbaalenii PYR-1]
          Length = 214

 Score = 39.1 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D E TGLD K+DR+IEI  +
Sbjct: 11 IDCEMTGLDLKSDRLIEIAVL 31


>gi|291286506|ref|YP_003503322.1| Exonuclease RNase T and DNA polymerase III [Denitrovibrio
          acetiphilus DSM 12809]
 gi|290883666|gb|ADD67366.1| Exonuclease RNase T and DNA polymerase III [Denitrovibrio
          acetiphilus DSM 12809]
          Length = 174

 Score = 39.1 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 3  RKNKM-RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
          ++  M +K+  D++T+G+      IIEI A++      T   F  ++ 
Sbjct: 7  KEALMAQKVYIDMKTSGISPSKGEIIEICALKPDVDLMTYEMFHAYIK 54


>gi|269795775|ref|YP_003315230.1| 5' exoribonuclease [Sanguibacter keddieii DSM 10542]
 gi|269097960|gb|ACZ22396.1| oligoribonuclease (3'->5' exoribonuclease) [Sanguibacter keddieii
          DSM 10542]
          Length = 220

 Score = 39.1 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--NRTFQVFLCPNGR 53
          R +  D E TGLD   D ++E+ AV + D   T       + + P   
Sbjct: 9  RIVWIDCEMTGLDLGADALVEVAAV-VTDSELTVLGEGIDIIVRPPDE 55


>gi|258652005|ref|YP_003201161.1| exonuclease RNase T and DNA polymerase III [Nakamurella
          multipartita DSM 44233]
 gi|258555230|gb|ACV78172.1| Exonuclease RNase T and DNA polymerase III [Nakamurella
          multipartita DSM 44233]
          Length = 212

 Score = 39.1 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D E TGLD   D++IEI A+
Sbjct: 4  RLVWVDCEMTGLDLGTDKLIEIAAL 28


>gi|254417569|ref|ZP_05031307.1| exonuclease superfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196175667|gb|EDX70693.1| exonuclease superfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 191

 Score = 39.1 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 7/135 (5%)

Query: 2   IRKNKMRKIVFDIETT---GLDS--KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKN 55
           + +   + +V D+E T   G     +   IIEIG   L  +S +  +T  + + P     
Sbjct: 1   MSRKIDQILVIDVEATCWQGKPPPGQESEIIEIGVCLLDCHSHSAVKTESMLVKPERSTV 60

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           S    +L  +T E +    SF+         +      W ++  ++D      + Q    
Sbjct: 61  SEFCTELTTLTQEQVDQGMSFAQACERLQKRYLSHQRVWASY-GEYDKNQFQKQCQSFGV 119

Query: 116 DPLDPSRIIDTLSIA 130
           +    SR I+  +  
Sbjct: 120 EYPFDSRHINVKTWF 134


>gi|313669465|ref|YP_004049891.1| exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
 gi|313156662|gb|ADR35338.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 174

 Score = 38.8 bits (88), Expect = 0.61,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 50/172 (29%), Gaps = 10/172 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           I+ D ET    +    +IE+ A  +           TF  +       N           
Sbjct: 2   IILDFETN--SANIHDVIEVAAFRIKREEGVYVIADTFHRYYFSEYEVNPYALAVHKLSP 59

Query: 67  DEFLKDKPSFSSIFSEFWD----FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
               + + +         D     F +     IAHN  F++  +   ++         S 
Sbjct: 60  QRIERLRANVDYAEHFAEDSEFVEFCQGAKTLIAHNITFELRHLGELVRFEKHFCTMKSN 119

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                +I  R    +   L + C+ Y I       H A+ D     +V   M
Sbjct: 120 KKIVGAINIRGSLKNPKLLET-CRHYQIEFDEEQYHSAVYDVTKTLEVLNNM 170


>gi|293395725|ref|ZP_06640007.1| exodeoxyribonuclease X [Serratia odorifera DSM 4582]
 gi|291421662|gb|EFE94909.1| exodeoxyribonuclease X [Serratia odorifera DSM 4582]
          Length = 222

 Score = 38.8 bits (88), Expect = 0.61,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 22/211 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GLD     I+E+ +++++D           +CP+ R    EA+ +H IT+  +
Sbjct: 5   VIDTETCGLD---GGIVEVASIDIIDGQL-ANPMSDLVCPD-RPIGIEAMAIHHITEAMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP  +     +       +  ++AHNA FD G +               R I T+ +A
Sbjct: 60  EGKPRIAVAIGRYM-----GSEYYVAHNAAFDRGVLPE----------MNGRWICTVKLA 104

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R  +P  +     L     +      +   L     L D Y+   +    I     + E+
Sbjct: 105 RALYPGIKYGNQYLRYALNLE-VQLPQDTTLYPHRALYDCYVTAALLQRIIKDSGWSAEE 163

Query: 191 -RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
                E+   +      K       RI +E+
Sbjct: 164 MANITEQPVLLKTFKFGKYRGQPIDRIAQED 194


>gi|189235963|ref|XP_969322.2| PREDICTED: similar to p15-2a protein [Tribolium castaneum]
          Length = 292

 Score = 38.8 bits (88), Expect = 0.61,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 23/102 (22%), Gaps = 15/102 (14%)

Query: 9   KIVFDIETTGLDS---KNDRIIEIGAVELLDYSK------------TNRTFQVFLCPNGR 53
            + FD+ETTGL        RI E  AV +                       +   P   
Sbjct: 7   FVFFDLETTGLPKFEENRTRITEFCAVAVRADHIGLQTAQKCKLPRVQSKLSLCFNPARA 66

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI 95
                        +         S   +   ++ +       
Sbjct: 67  ICPQATKLTGLSNELLEHQAHFSSQTLNVIKNWLDVNEKPIC 108


>gi|78484978|ref|YP_390903.1| oligoribonuclease [Thiomicrospira crunogena XCL-2]
 gi|123555812|sp|Q31HZ4|ORN_THICR RecName: Full=Oligoribonuclease
 gi|78363264|gb|ABB41229.1| Exonuclease [Thiomicrospira crunogena XCL-2]
          Length = 184

 Score = 38.8 bits (88), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD K D+IIEI  V
Sbjct: 10 IDLEMTGLDHKADQIIEIATV 30


>gi|330504554|ref|YP_004381423.1| exonuclease I [Pseudomonas mendocina NK-01]
 gi|328918840|gb|AEB59671.1| exonuclease I [Pseudomonas mendocina NK-01]
          Length = 481

 Score = 38.8 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61
          D ETTG++ + DR +++  +   +  ++      ++  P+       A  
Sbjct: 9  DYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAAC 58


>gi|146308334|ref|YP_001188799.1| exonuclease I [Pseudomonas mendocina ymp]
 gi|145576535|gb|ABP86067.1| Exodeoxyribonuclease I subunit C [Pseudomonas mendocina ymp]
          Length = 481

 Score = 38.8 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61
          D ETTG++ + DR +++  +   +  ++      ++  P+       A  
Sbjct: 9  DYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAAC 58


>gi|292488519|ref|YP_003531403.1| exodeoxyribonuclease X [Erwinia amylovora CFBP1430]
 gi|292899700|ref|YP_003539069.1| exodeoxyribonuclease X [Erwinia amylovora ATCC 49946]
 gi|291199548|emb|CBJ46665.1| exodeoxyribonuclease X [Erwinia amylovora ATCC 49946]
 gi|291553950|emb|CBA20995.1| exodeoxyribonuclease X [Erwinia amylovora CFBP1430]
          Length = 221

 Score = 38.8 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 20/174 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V++++           + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGL---QGGVVEVASVDVINGQIV-NPMSDLISPD-RPISRQAIAVHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP+       +       +  ++AHNA FD   +                 I T+++A
Sbjct: 59  RGKPTIEQAIGRYH-----GSPFYVAHNASFDRRMLPE----------MHGEWICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           RR  P  +    SL +   + +S  ++  A    +        ++   S   + 
Sbjct: 104 RRLWPGLKYTNESLRQSLQLEVSPPAELHAHRALYDCYVTAALLIRIMSFSGWD 157


>gi|89052623|ref|YP_508074.1| exonuclease [Jannaschia sp. CCS1]
 gi|88862172|gb|ABD53049.1| Exonuclease [Jannaschia sp. CCS1]
          Length = 196

 Score = 38.8 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 60/188 (31%), Gaps = 17/188 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I  D+ET   ++    I +IG   +     +  T    + P  +  SP    LHGI+ 
Sbjct: 16  RFIAVDVET--ANNAQGSICQIGLCCV-GSDDSLNTVSTLIDPE-QSFSPFNTDLHGISA 71

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +   P+F   ++  +   N      +  +++FD     A   R +   +         
Sbjct: 72  ETVNGAPTFPQAYASLYPVLNAH---RLVQHSRFDEAAFTAACARYDVPMVTSHWTDSVK 128

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK----------MMVG 177
              +          + L             H A  D+   + V ++           +  
Sbjct: 129 IARQAWPELKGAGGHGLASLKKALGLSFHHHDAGEDARASATVILRAEARISKAVAHLRF 188

Query: 178 GSQINFGF 185
             Q+ F F
Sbjct: 189 DPQLAFEF 196


>gi|238762297|ref|ZP_04623269.1| Exodeoxyribonuclease 10 [Yersinia kristensenii ATCC 33638]
 gi|238699644|gb|EEP92389.1| Exodeoxyribonuclease 10 [Yersinia kristensenii ATCC 33638]
          Length = 219

 Score = 38.8 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 23/186 (12%), Positives = 50/186 (26%), Gaps = 24/186 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET G       I+EI +V++++           + P     SP+            
Sbjct: 5   VIDTETCGF---EGGIVEIASVDVVNGVV--------INPMSDLVSPDRPISLDAMII-- 51

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDTLS 128
                         +    +    +A        +  A     ++  L     + I TL 
Sbjct: 52  ---------HHITEEMVEGKPRIAVAVRKYQGSPYYVAHNAPFDRGVLPEMGGQWICTLK 102

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +AR  +P  ++    L     + +S           +        +        +  +  
Sbjct: 103 LARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIMRDSGWNAEQM 162

Query: 189 EDRFFK 194
            +   +
Sbjct: 163 VEVTQQ 168


>gi|197322426|ref|YP_002154699.1| putative oligoribonuclease [Feldmannia species virus]
 gi|197130493|gb|ACH46829.1| putative oligoribonuclease [Feldmannia species virus]
          Length = 250

 Score = 38.8 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/96 (12%), Positives = 21/96 (21%), Gaps = 1/96 (1%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDEFL 70
            DIET+ LD     ++EI  V          +  V +  P        +           
Sbjct: 26  IDIETSSLDFSTSDVLEIAIVVTDSGLNVWDSLHVVIHHPINILMLKSSNWCKEKFCSRS 85

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
                             +     +     +    I
Sbjct: 86  YGGNGLFDDCHYSNTSITDATHLMLNFFEYYSTHEI 121


>gi|149190027|ref|ZP_01868305.1| exonuclease I [Vibrio shilonii AK1]
 gi|148836193|gb|EDL53152.1| exonuclease I [Vibrio shilonii AK1]
          Length = 473

 Score = 38.8 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 7/150 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            FD ET G+    DR  +   V    +++       ++  P           L       
Sbjct: 10  FFDYETWGVSPAKDRACQFAGVRTDENFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQ 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L  +   S       +F  + + E    N     G+ +                ID  + 
Sbjct: 70  LCQEKGLSEP-----EFIAKIHHELATPNTTSL-GYNSIRFDDEVTRYTCYRNFIDPYAW 123

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
           + +   S  + L+ +   + +         
Sbjct: 124 SWQNGNSRWDLLDVMRACHALRPEGIEWPE 153


>gi|110803333|ref|YP_699430.1| exonuclease family protein [Clostridium perfringens SM101]
 gi|110683834|gb|ABG87204.1| exonuclease family protein [Clostridium perfringens SM101]
          Length = 300

 Score = 38.8 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 1/152 (0%)

Query: 24  DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSE 82
           + IIEIGA++L  + +    F+ ++ P+  K  +P+ + + GIT++ LKD   F      
Sbjct: 37  NEIIEIGAIKLNKFMQEVDEFKTYIKPSVFKVLNPKIIDITGITEDHLKDGIKFEDAMDN 96

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN 142
             DF  E +               NA+             I       +         L 
Sbjct: 97  LKDFIGEDDILCSWATDDIVHIVNNAKYHSYKNISWIKKYIDIQKYCTKILAHKKSLSLK 156

Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +   I I     H AL D+   ++V+ ++
Sbjct: 157 HALEELKIKIDKSKLHDALNDAVYTAEVFKRL 188


>gi|54298969|ref|YP_125338.1| ribonuclease T [Legionella pneumophila str. Paris]
 gi|53752754|emb|CAH14189.1| ribonuclease T [Legionella pneumophila str. Paris]
          Length = 207

 Score = 38.8 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 64/187 (34%), Gaps = 14/187 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDY-----SKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D+ET G+D + + ++E+  V L         K +  F+  L   G +   ++L  + 
Sbjct: 22  VVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKESSYFEHILPFPGAELDQKSLAFNQ 81

Query: 65  ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           I                        +       Q A  + HNA FD+ FI A ++R    
Sbjct: 82  IDPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIKAAIKRTGIK 141

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                      +            L    +  G+    +  H A+ D+   +D++  M+ 
Sbjct: 142 SP-FHAFTCFDTATLAGLIFGETVLAKAVQAAGLHFDSQEAHSAIYDAEKTADLFCLMIN 200

Query: 177 GGSQINF 183
               +N 
Sbjct: 201 KWRMLNI 207


>gi|297802094|ref|XP_002868931.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297314767|gb|EFH45190.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 227

 Score = 38.8 bits (88), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 10 IVFDIETTGLDSKND--RIIEIGAVELLDYSKTN-RTFQVFLCPNG 52
          + FD+ETT  +       I+E GA+ +         +F   + P  
Sbjct: 11 VFFDLETTVPNKVGQYFHILEFGAIIVCPRKLEELESFTTLIQPKD 56


>gi|254453711|ref|ZP_05067148.1| exonuclease [Octadecabacter antarcticus 238]
 gi|198268117|gb|EDY92387.1| exonuclease [Octadecabacter antarcticus 238]
          Length = 205

 Score = 38.8 bits (88), Expect = 0.64,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I  D+ET G       I +IG   + +     +T+ V + P      P   +LHGI+ 
Sbjct: 19  RFIALDVETAGKTIAG--ICQIGLCFVSNTGAV-QTYSVLIEPE-EPFEPFNTELHGISA 74

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           + ++   +F  +++  +D  N      +  ++ FD   + +   R     +    
Sbjct: 75  DTVEGAGTFPEVYAALFDLLNTH---SLVQHSTFDEKALTSACARYGLPMITSHW 126


>gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506]
 gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506]
          Length = 981

 Score = 38.8 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 9   KIVFDIETTGLDSKNDRII 27
            +  D ETTGLD     I+
Sbjct: 393 FVAVDTETTGLDPMQADIV 411


>gi|294669159|ref|ZP_06734240.1| oligoribonuclease [Neisseria elongata subsp. glycolytica ATCC
          29315]
 gi|291308903|gb|EFE50146.1| oligoribonuclease [Neisseria elongata subsp. glycolytica ATCC
          29315]
          Length = 185

 Score = 38.8 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD + +RIIE+  +
Sbjct: 11 LDMEMTGLDPERERIIEVAMI 31


>gi|88858891|ref|ZP_01133532.1| oligoribonuclease [Pseudoalteromonas tunicata D2]
 gi|88819117|gb|EAR28931.1| oligoribonuclease [Pseudoalteromonas tunicata D2]
          Length = 181

 Score = 38.8 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+ K D+I+EI 
Sbjct: 11 LDLEMTGLEPKTDKILEIA 29


>gi|269219723|ref|ZP_06163577.1| oligoribonuclease [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210965|gb|EEZ77305.1| oligoribonuclease [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 214

 Score = 38.8 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 10 IV-FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50
          IV  D E TGLD   D ++E+  V    + +  +    V + P
Sbjct: 5  IVWIDCEMTGLDLNVDELVEVAVVITDSELNPVDEGIDVLIRP 47


>gi|226493850|ref|NP_001151909.1| exonuclease [Zea mays]
 gi|195650883|gb|ACG44909.1| exonuclease [Zea mays]
          Length = 302

 Score = 38.8 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 6   KMR--KIVFDIETTGLDSKN-DR--IIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEA 59
            MR   + FD+ETT   +    R  ++E GA+ +         ++   + P         
Sbjct: 2   TMRDEIVFFDVETTAPSAAGPGRWWLLEFGAILVCPRKLVEVGSYDTLIRPGDLSAVSRR 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
                +    +   P F  +  + +D  +     W  HN + 
Sbjct: 62  F-TDDVEAAIMASAPPFKDVADKIFDILDG--RVWAGHNIQR 100


>gi|195331405|ref|XP_002032393.1| GM23540 [Drosophila sechellia]
 gi|194121336|gb|EDW43379.1| GM23540 [Drosophila sechellia]
          Length = 184

 Score = 38.8 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 1/64 (1%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEALKLHGITDEFLK 71
          D+E TGLD + D+I+E+  +              F +                   +   
Sbjct: 15 DLEMTGLDIEKDKILEVACIITDQDLNVKSEGACFAINHPQEVYDSMNEWCMEQHYKSGL 74

Query: 72 DKPS 75
              
Sbjct: 75 IDRC 78


>gi|26988099|ref|NP_743524.1| exonuclease I [Pseudomonas putida KT2440]
 gi|24982826|gb|AAN66988.1|AE016327_3 exodeoxyribonuclease I [Pseudomonas putida KT2440]
          Length = 477

 Score = 38.8 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/160 (11%), Positives = 45/160 (28%), Gaps = 7/160 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETTG++ + DR +++  +    D ++ +    ++  P+           H        
Sbjct: 9   DYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILP------HPAACLVTG 62

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P   +        F  +    +A       G+                   D  +   
Sbjct: 63  ITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAREW 122

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +   S  + ++ +   Y +             + L  ++ 
Sbjct: 123 QGGNSRWDLIDIVRTAYALRPEGIEWPQQDGRTSLRLELL 162


>gi|312172662|emb|CBX80918.1| exodeoxyribonuclease X [Erwinia amylovora ATCC BAA-2158]
          Length = 221

 Score = 38.8 bits (88), Expect = 0.66,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 20/174 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V++++           + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGL---QGGVVEVASVDVINGQIV-NPMSDLISPD-RPISRQAIAVHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP+       +       +  ++AHNA FD   +                 I T+++A
Sbjct: 59  RGKPTIEQAIGRYH-----GSPFYVAHNASFDRRMLPE----------MHGEWICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           RR  P  +    SL +   + +S  ++  A    +        ++   S   + 
Sbjct: 104 RRLWPGLKYTNESLRQSLQLEVSPPAELHAHRALYDCYVTAALLIRIMSFSGWD 157


>gi|195573238|ref|XP_002104602.1| GD18354 [Drosophila simulans]
 gi|194200529|gb|EDX14105.1| GD18354 [Drosophila simulans]
          Length = 208

 Score = 38.8 bits (88), Expect = 0.66,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
          D+E TGLD + D+I+E+  +                 P    N P+ +          + 
Sbjct: 39 DLEMTGLDIEKDKILEVACIITDQDLNVKSE-----GPCFAINHPQEVYDSMNEWCMEQH 93

Query: 73 K 73
           
Sbjct: 94 Y 94


>gi|118595061|ref|ZP_01552408.1| putative DNA exonuclease X [Methylophilales bacterium HTCC2181]
 gi|118440839|gb|EAV47466.1| putative DNA exonuclease X [Methylophilales bacterium HTCC2181]
          Length = 220

 Score = 38.8 bits (88), Expect = 0.66,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 11 VFDIETTGLDSKNDRI-IEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
          +FD ETTG   +ND + IE   +E+ D    +   +F     P G+     AL  H I D
Sbjct: 6  IFDTETTG---RNDPVLIEAAWIEIRDIANFELGTSFCERFNP-GKPIELGALATHHIYD 61

Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98
          E L D P  SS        +   +      N
Sbjct: 62 EELVDCPPASSFALPTPCEYLIGHNIDYDWN 92


>gi|313500409|gb|ADR61775.1| SbcB [Pseudomonas putida BIRD-1]
          Length = 477

 Score = 38.8 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 18/160 (11%), Positives = 45/160 (28%), Gaps = 7/160 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETTG++ + DR +++  +    D ++ +    ++  P+           H        
Sbjct: 9   DYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILP------HPAACLVTG 62

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P   +        F  +    +A       G+                   D  +   
Sbjct: 63  ITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAREW 122

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +   S  + ++ +   Y +             + L  ++ 
Sbjct: 123 QGGNSRWDLIDIVRTAYALRPEGIQWPQQDGRTSLRLELL 162


>gi|255523821|ref|ZP_05390786.1| Exonuclease RNase T and DNA polymerase III [Clostridium
          carboxidivorans P7]
 gi|255512524|gb|EET88799.1| Exonuclease RNase T and DNA polymerase III [Clostridium
          carboxidivorans P7]
          Length = 998

 Score = 38.8 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
          I  DIETT  D+K  RI    AV++ +   +   F   + P+
Sbjct: 11 IFLDIETTHTDNKVIRIC---AVKIKNNEIS--RFSSLVNPD 47


>gi|62859267|ref|NP_001016146.1| exoribonuclease 1 [Xenopus (Silurana) tropicalis]
 gi|89268181|emb|CAJ81479.1| exonuclease 1 [Xenopus (Silurana) tropicalis]
          Length = 345

 Score = 38.8 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSK-NDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           V D E T   G  +     IIE   V L  ++ +    FQ ++ P      S   + L G
Sbjct: 128 VIDFEATCEEGNSTDYTHEIIEFPIVLLNTHTLEIEDVFQRYVRPEINPQLSEFCVNLTG 187

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115
           IT + +     F  +     D+  E+              + +    +       +    
Sbjct: 188 ITQDIVDKSDIFPDVLRSVVDWMREKELGTKYKYAILTDGSWDMSKFLNMQCRVSRLKYP 247

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P ++  L ++ ++ G+T   R   G     ++ + +   M+
Sbjct: 248 RFAKKWINICKSYGNFYKVPRTQTKLTTMLEKLGMTYDGRLHSGVDDSKNI-ARIAAHML 306

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 307 QDGCELRVN 315


>gi|323466912|gb|ADX70599.1| DNA polymerase III alpha chain [Lactobacillus helveticus H10]
          Length = 177

 Score = 38.8 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 5/160 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + D    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHFPESA--CSLALVMVRDNKIVDR-FYTVINPQ-MSFDARNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +K+ P+  +          +      AHN +FD   +   L R N +      I   
Sbjct: 57  ADDVKNAPT-MAEVWPKIKGLYQPGMLVAAHNTRFDTNVMRQSLARYNIEEPHYLVIDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            +    +     + L+++     + + H     +  ++  
Sbjct: 116 ATSKLFEPELPNHKLDTVSDALDVELWHHHNALSDSEACA 155


>gi|270004806|gb|EFA01254.1| three prime repair exonuclease [Tribolium castaneum]
          Length = 232

 Score = 38.8 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%)

Query: 9  KIVFDIETTGLDS---KNDRIIEIGAVELL 35
           + FD+ETTGL        RI E  AV + 
Sbjct: 7  FVFFDLETTGLPKFEENRTRITEFCAVAVR 36


>gi|255068356|ref|ZP_05320211.1| oligoribonuclease [Neisseria sicca ATCC 29256]
 gi|255047405|gb|EET42869.1| oligoribonuclease [Neisseria sicca ATCC 29256]
          Length = 185

 Score = 38.8 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD + +RIIE+  +
Sbjct: 11 LDMEMTGLDPERERIIEVAMI 31


>gi|161507225|ref|YP_001577179.1| DNA polymerase III alpha chain [Lactobacillus helveticus DPC 4571]
 gi|160348214|gb|ABX26888.1| DNA polymerase III alpha chain [Lactobacillus helveticus DPC 4571]
          Length = 177

 Score = 38.8 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 5/160 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + D    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHFPESA--CSLALVMVRDNKIVDR-FYTVINPQ-MSFDARNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +K+ P+  +          +      AHNA+FD   +   L R N +      I   
Sbjct: 57  ADDVKNAPT-MAEVWPKIKGLYQPGMLVAAHNARFDTNVMRQSLARYNIEEPHYLVIDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            +    +     + L+++     + + H     +  ++  
Sbjct: 116 ATSKLFEPELPNHKLDTVSDALDVELWHHHNALSDSEACA 155


>gi|145295382|ref|YP_001138203.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum R]
 gi|140845302|dbj|BAF54301.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 237

 Score = 38.8 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 51/184 (27%), Gaps = 8/184 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG++  + RI+    V +          ++   P               T+    
Sbjct: 22  FDLETTGVNPFDTRIVTSAMVTITSKGA--EPIELLADPGIEIPEAATAVHGITTEHARA 79

Query: 72  DKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +      + +E               I  NA +D+  +         D L     +    
Sbjct: 80  NGRPHDEVLAETISRLRAGWQAGLSVIVFNASYDLTVLRNHDPSFTIDGLVYDPFVIDKV 139

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVGGSQINFGF 185
             R +                +  +H +   AL  + +      ++ ++     +    F
Sbjct: 140 KDRYRKGKRTLTDMCAHYDVQLGNAHEATSDALAAARIAWKQVRLWPELTKMTGEELMEF 199

Query: 186 KTNE 189
           +   
Sbjct: 200 QAVN 203


>gi|21324010|dbj|BAB98636.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
          Length = 245

 Score = 38.8 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 51/184 (27%), Gaps = 8/184 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG++  + RI+    V +          ++   P               T+    
Sbjct: 30  FDLETTGVNPFDTRIVTSAMVTITSKGA--EPIELLADPGIEIPEAATAVHGITTEHARA 87

Query: 72  DKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +      + +E               I  NA +D+  +         D L     +    
Sbjct: 88  NGRPHDEVLAETISRLRAGWQAGLSVIVFNASYDLTVLRNHDPSFTIDGLVYDPFVIDKV 147

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVGGSQINFGF 185
             R +                +  +H +   AL  + +      ++ ++     +    F
Sbjct: 148 KDRYRKGKRTLTDMCAHYDVQLGNAHEATSDALAAARIAWKQVRLWPELTKMTGEELMEF 207

Query: 186 KTNE 189
           +   
Sbjct: 208 QAVN 211


>gi|19552464|ref|NP_600466.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum ATCC
           13032]
 gi|62390130|ref|YP_225532.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum ATCC
           13032]
 gi|41325466|emb|CAF19946.1| putative DNA polymerase III alpha subunit, the Gram-positive type
           [Corynebacterium glutamicum ATCC 13032]
          Length = 237

 Score = 38.8 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 51/184 (27%), Gaps = 8/184 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG++  + RI+    V +          ++   P               T+    
Sbjct: 22  FDLETTGVNPFDTRIVTSAMVTITSKGA--EPIELLADPGIEIPEAATAVHGITTEHARA 79

Query: 72  DKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +      + +E               I  NA +D+  +         D L     +    
Sbjct: 80  NGRPHDEVLAETISRLRAGWQAGLSVIVFNASYDLTVLRNHDPSFTIDGLVYDPFVIDKV 139

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVGGSQINFGF 185
             R +                +  +H +   AL  + +      ++ ++     +    F
Sbjct: 140 KDRYRKGKRTLTDMCAHYDVQLGNAHEATSDALAAARIAWKQVRLWPELTKMTGEELMEF 199

Query: 186 KTNE 189
           +   
Sbjct: 200 QAVN 203


>gi|300780020|ref|ZP_07089876.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium
          ATCC 33030]
 gi|300534130|gb|EFK55189.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium
          ATCC 33030]
          Length = 341

 Score = 38.8 bits (88), Expect = 0.68,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 15/52 (28%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +   ++TT +     R++ + AV   D       F       G        
Sbjct: 19 YVALYVQTTNIHPSTGRLVTLDAVAFDDSGVVGEEFHRIFNVGGDPGPMHMH 70


>gi|254450798|ref|ZP_05064235.1| exonuclease [Octadecabacter antarcticus 238]
 gi|198265204|gb|EDY89474.1| exonuclease [Octadecabacter antarcticus 238]
          Length = 206

 Score = 38.8 bits (88), Expect = 0.68,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I  D+ET G       I +IG   + +     +T+ V + P      P   +LHGI+ 
Sbjct: 20  RFIALDVETAGKTIAG--ICQIGLCFVSNTGAV-QTYSVLIEPE-EPFEPFNTELHGISS 75

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           + +    +F  +++  +D  N      +  ++ FD   + +   R     +    
Sbjct: 76  DTVAGAGTFPEVYAALFDLLNTH---SLVQHSTFDEKALTSACARYGLPMITSHW 127


>gi|323491900|ref|ZP_08097072.1| oligoribonuclease [Vibrio brasiliensis LMG 20546]
 gi|323313843|gb|EGA66935.1| oligoribonuclease [Vibrio brasiliensis LMG 20546]
          Length = 181

 Score = 38.8 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  ++IEI 
Sbjct: 11 IDLEMTGLDPETHKVIEIA 29


>gi|282854757|ref|ZP_06264092.1| exonuclease [Propionibacterium acnes J139]
 gi|282582339|gb|EFB87721.1| exonuclease [Propionibacterium acnes J139]
          Length = 205

 Score = 38.8 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD  +D +IE+ A+              V + P  +        +  + 
Sbjct: 8  IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPESQWLDHMNDFVRDMH 63


>gi|213692662|ref|YP_002323248.1| hypothetical protein Blon_1795 [Bifidobacterium longum subsp.
          infantis ATCC 15697]
 gi|213524123|gb|ACJ52870.1| hypothetical protein Blon_1795 [Bifidobacterium longum subsp.
          infantis ATCC 15697]
 gi|320458813|dbj|BAJ69434.1| conserved hypothetical protein [Bifidobacterium longum subsp.
          infantis ATCC 15697]
          Length = 189

 Score = 38.8 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 12 FDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           DIETTG D ++D ++EIG     +   ++  R ++  + P            H + 
Sbjct: 11 VDIETTGTDPRHDLMLEIGLRCTSMDAKTEYAR-YESVIKPGVLPTDRSFAYAHRMH 66


>gi|73958918|ref|XP_851106.1| PREDICTED: similar to CG6393-PA, isoform A [Canis familiaris]
          Length = 279

 Score = 38.8 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 56/177 (31%), Gaps = 6/177 (3%)

Query: 10  IVFDIETT----GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G   ++  IIE  AV L     +    F  ++ P      S   ++L 
Sbjct: 38  IVIDFESTCWNDGKHHQSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPVLSEFCMELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI    + +        S+F  +  +   +     A       N+E++           +
Sbjct: 98  GIKQAQVDEGVPLRICLSQFCKWIQKIQQQKKIIFATGISDLSNSEVKLCAFVTWSDWDL 157

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              L    ++    +    +      +T     +      S  L +V I+ +     
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFYRRKPKGLSGALQEVGIEFLGQEHS 214


>gi|87121900|ref|ZP_01077785.1| oligoribonuclease [Marinomonas sp. MED121]
 gi|86162698|gb|EAQ63978.1| oligoribonuclease [Marinomonas sp. MED121]
          Length = 183

 Score = 38.8 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 43/182 (23%), Gaps = 17/182 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-------LCPNGRKNSPEALKLHG 64
            D+E TGLD + + IIEI  +       T++   V        +                
Sbjct: 11  IDLEMTGLDPEKNTIIEIATI------VTDKHLNVLSEGPNLAIHQPLSVMDAMDEWCTS 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
              +    K    +  S                      G        + +D     R +
Sbjct: 65  HHGQSGLTKRVLETQMSMSQAELETIQF----LEKYVPKGVSPICGNSVGQDRRFLYRYM 120

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
             L           + +  L KR+   +           +       I  +    +  F 
Sbjct: 121 PALEAYFHYRYIDVSTIKELAKRWQPEVLDGFSKKGSHLAMDDIKESIAELAFYREQFFN 180

Query: 185 FK 186
           F 
Sbjct: 181 FN 182


>gi|309972889|gb|ADO96090.1| Oligoribonuclease [Haemophilus influenzae R2846]
          Length = 182

 Score = 38.8 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+ + +RIIEI 
Sbjct: 11 IDLEMTGLEPEKERIIEIA 29


>gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 925

 Score = 38.8 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 9   KIVFDIETTGLDSKNDRII 27
           ++ FD ETTGLD     ++
Sbjct: 335 QVAFDTETTGLDPLRAELV 353


>gi|62901864|gb|AAY18883.1| CGI-114 [synthetic construct]
          Length = 229

 Score = 38.8 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD + D+IIE+  +
Sbjct: 34 RMVWVDLEMTGLDIEKDQIIEMACL 58


>gi|229847336|ref|ZP_04467438.1| oligoribonuclease [Haemophilus influenzae 7P49H1]
 gi|229809761|gb|EEP45485.1| oligoribonuclease [Haemophilus influenzae 7P49H1]
          Length = 182

 Score = 38.8 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+ + +RIIEI 
Sbjct: 11 IDLEMTGLEPEKERIIEIA 29


>gi|254372051|ref|ZP_04987544.1| oligoribonuclease [Francisella tularensis subsp. novicida
          GA99-3549]
 gi|254375197|ref|ZP_04990677.1| oligoribonuclease [Francisella novicida GA99-3548]
 gi|151569782|gb|EDN35436.1| oligoribonuclease [Francisella novicida GA99-3549]
 gi|151572915|gb|EDN38569.1| oligoribonuclease [Francisella novicida GA99-3548]
 gi|328676136|gb|AEB27006.1| Oligoribonuclease [Francisella cf. novicida Fx1]
          Length = 178

 Score = 38.8 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD  + +IIEI A+
Sbjct: 10 IDLEMTGLDVDSCKIIEIAAI 30


>gi|56478238|ref|YP_159827.1| hypothetical protein ebA4923 [Aromatoleum aromaticum EbN1]
 gi|56314281|emb|CAI08926.1| hypothetical protein ebA4923 [Aromatoleum aromaticum EbN1]
          Length = 244

 Score = 38.8 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNG 52
           R ++ + E TGLD    R++ +GA+ +     +   +F   L P+ 
Sbjct: 74  RYVIVNTEATGLDLDAARLLAVGAIAVDGGLLSPAASFYARLEPDP 119


>gi|313884945|ref|ZP_07818697.1| DNA polymerase III, epsilon subunit [Eremococcus coleocola
          ACS-139-V-Col8]
 gi|312619636|gb|EFR31073.1| DNA polymerase III, epsilon subunit [Eremococcus coleocola
          ACS-139-V-Col8]
          Length = 199

 Score = 38.8 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I FD+E T  + ++ +II++ AV      +    F  F+             L GIT +
Sbjct: 7  YIAFDLEFTSFE-EDSQIIQVSAVRFKQGQEVA-HFDSFVN-TDHAIPSFISGLTGITLD 63

Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
           ++  P   ++ +EF DF  +       
Sbjct: 64 QIQAAPKIDTVMNEFKDFVGDLPLIGYN 91


>gi|331698794|ref|YP_004335033.1| Oligoribonuclease [Pseudonocardia dioxanivorans CB1190]
 gi|326953483|gb|AEA27180.1| Oligoribonuclease [Pseudonocardia dioxanivorans CB1190]
          Length = 204

 Score = 38.8 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39
          R +  D E TGLD + D +IEI AV + D   
Sbjct: 4  RLVWIDCEMTGLDLQRDALIEI-AVLVTDGDL 34


>gi|312962237|ref|ZP_07776729.1| exonuclease [Pseudomonas fluorescens WH6]
 gi|311283574|gb|EFQ62163.1| exonuclease [Pseudomonas fluorescens WH6]
          Length = 180

 Score = 38.8 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 5/112 (4%)

Query: 9   KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            ++ D+E TT   G       +IEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLIIDLEATTDEGGWPVTEMEVIEIGASLVNRQGRELDHFQRFVRPLRRPLLTPFCRQLT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            IT   +      + ++  F  +  +  A      +  D   +  EL+    
Sbjct: 64  HITQANIDAAAPVTEVWPLFERWLGQHQARLEGWASWGDYDRVQLELEWQRH 115


>gi|28572517|ref|NP_789297.1| oligoribonuclease [Tropheryma whipplei TW08/27]
 gi|81839179|sp|Q83HW9|ORN_TROW8 RecName: Full=Oligoribonuclease
 gi|28410649|emb|CAD67035.1| oligoribonuclease [Tropheryma whipplei TW08/27]
          Length = 184

 Score = 38.8 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D E TGL+ + D ++E+  +
Sbjct: 13 VDCEMTGLNPERDELLEVAVI 33


>gi|145637656|ref|ZP_01793311.1| oligoribonuclease [Haemophilus influenzae PittHH]
 gi|145269179|gb|EDK09127.1| oligoribonuclease [Haemophilus influenzae PittHH]
          Length = 182

 Score = 38.8 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+ + +RIIEI 
Sbjct: 11 IDLEMTGLEPEKERIIEIA 29


>gi|148549564|ref|YP_001269666.1| exonuclease I [Pseudomonas putida F1]
 gi|148513622|gb|ABQ80482.1| Exodeoxyribonuclease I subunit C [Pseudomonas putida F1]
          Length = 477

 Score = 38.8 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 18/160 (11%), Positives = 45/160 (28%), Gaps = 7/160 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETTG++ + DR +++  +    D ++ +    ++  P+           H        
Sbjct: 9   DYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILP------HPAACLVTG 62

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P   +        F  +    +A       G+                   D  +   
Sbjct: 63  ITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAREW 122

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +   S  + ++ +   Y +             + L  ++ 
Sbjct: 123 QGGNSRWDLIDIVRTAYALRPEGIEWPQQDGRTSLRLELL 162


>gi|148652620|ref|YP_001279713.1| oligoribonuclease [Psychrobacter sp. PRwf-1]
 gi|148571704|gb|ABQ93763.1| Exonuclease, RNase T and DNA polymerase III [Psychrobacter sp.
           PRwf-1]
          Length = 193

 Score = 38.8 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 50/175 (28%), Gaps = 5/175 (2%)

Query: 12  FDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+E TGLD+ ND IIEI   V   D +         +  + +K +           +  
Sbjct: 21  IDLEMTGLDTMNDDIIEIATIVTDEDLNILAEGPVFAIKVSDQKLNAMDDWNTKQHGQSG 80

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                  S  +        +       N   D G        I +D    +R +  L   
Sbjct: 81  LIDRVRRSSVTLEQA----EQETIAFLNKWVDEGKSPMCGNSICQDRRFLARQMPQLERF 136

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                   + +  LC R+   I    +      +       I+ +    Q  F  
Sbjct: 137 FHYRNLDVSSIKELCYRWRPDILKGVEKTGSHLAMDDIRDSIRELKHYRQHFFKL 191


>gi|13097411|gb|AAH03445.1| Rexo2 protein [Mus musculus]
          Length = 205

 Score = 38.8 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 1  MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 34


>gi|325068353|ref|ZP_08127026.1| Exonuclease RNase T and DNA polymerase III [Actinomyces oris K20]
          Length = 210

 Score = 38.8 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51
           D E TGLD   D +IE+  V    +         V + P 
Sbjct: 17 IDCEMTGLDQSADALIEVAVVVTDYELKPLAEGIDVLIKPP 57


>gi|315605967|ref|ZP_07880998.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon
          180 str. F0310]
 gi|315312249|gb|EFU60335.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon
          180 str. F0310]
          Length = 250

 Score = 38.8 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37
          FD ETTG+    DR++    V  +D 
Sbjct: 11 FDTETTGVRPLKDRLVTAALVLRIDG 36


>gi|326773762|ref|ZP_08233045.1| oligoribonuclease [Actinomyces viscosus C505]
 gi|326636992|gb|EGE37895.1| oligoribonuclease [Actinomyces viscosus C505]
          Length = 210

 Score = 38.8 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51
           D E TGLD   D +IE+  V    +         V + P 
Sbjct: 17 IDCEMTGLDQSADALIEVAVVVTDYELKPLAEGIDVLIKPP 57


>gi|254823127|ref|ZP_05228128.1| oligoribonuclease [Mycobacterium intracellulare ATCC 13950]
          Length = 215

 Score = 38.8 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)

Query: 7  MR-KIV-FDIETTGLDSKNDRIIEIGAV 32
          MR ++V  D E TGLD  +D++IEI A+
Sbjct: 1  MRDELVWIDCEMTGLDLGSDKLIEIAAL 28


>gi|118464888|ref|YP_880896.1| oligoribonuclease [Mycobacterium avium 104]
 gi|254774490|ref|ZP_05216006.1| oligoribonuclease [Mycobacterium avium subsp. avium ATCC 25291]
 gi|166216267|sp|A0QDA8|ORN_MYCA1 RecName: Full=Oligoribonuclease
 gi|118166175|gb|ABK67072.1| oligoribonuclease [Mycobacterium avium 104]
          Length = 215

 Score = 38.8 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)

Query: 7  MR-KIV-FDIETTGLDSKNDRIIEIGAV 32
          MR ++V  D E TGLD  +D++IEI A+
Sbjct: 1  MRDELVWIDCEMTGLDLGSDKLIEIAAL 28


>gi|41408418|ref|NP_961254.1| oligoribonuclease [Mycobacterium avium subsp. paratuberculosis
          K-10]
 gi|48428193|sp|P61651|ORN_MYCPA RecName: Full=Oligoribonuclease
 gi|41396774|gb|AAS04637.1| hypothetical protein MAP_2320 [Mycobacterium avium subsp.
          paratuberculosis K-10]
          Length = 215

 Score = 38.8 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)

Query: 7  MR-KIV-FDIETTGLDSKNDRIIEIGAV 32
          MR ++V  D E TGLD  +D++IEI A+
Sbjct: 1  MRDELVWIDCEMTGLDLGSDKLIEIAAL 28


>gi|113968935|ref|YP_732728.1| oligoribonuclease [Shewanella sp. MR-4]
 gi|114048927|ref|YP_739477.1| oligoribonuclease [Shewanella sp. MR-7]
 gi|123130769|sp|Q0HMP6|ORN_SHESM RecName: Full=Oligoribonuclease
 gi|123131054|sp|Q0HR35|ORN_SHESR RecName: Full=Oligoribonuclease
 gi|113883619|gb|ABI37671.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4]
 gi|113890369|gb|ABI44420.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7]
          Length = 181

 Score = 38.8 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+   DR+IEI 
Sbjct: 11 IDLEMTGLEPDVDRVIEIA 29


>gi|301170471|emb|CBW30078.1| oligoribonuclease [Haemophilus influenzae 10810]
          Length = 182

 Score = 38.8 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+ + +RIIEI 
Sbjct: 11 IDLEMTGLEPEKERIIEIA 29


>gi|326382785|ref|ZP_08204475.1| oligoribonuclease [Gordonia neofelifaecis NRRL B-59395]
 gi|326198375|gb|EGD55559.1| oligoribonuclease [Gordonia neofelifaecis NRRL B-59395]
          Length = 199

 Score = 38.8 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D E TGLD  +D++IEI A+
Sbjct: 8  IDCEMTGLDVGSDKLIEIAAL 28


>gi|24372183|ref|NP_716225.1| oligoribonuclease [Shewanella oneidensis MR-1]
 gi|29611787|sp|Q8EJ78|ORN_SHEON RecName: Full=Oligoribonuclease
 gi|24346089|gb|AAN53670.1|AE015506_5 oligoribonuclease [Shewanella oneidensis MR-1]
          Length = 181

 Score = 38.8 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+   DR+IEI 
Sbjct: 11 IDLEMTGLEPDVDRVIEIA 29


>gi|322505025|emb|CAM42259.2| putative phosphotransferase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 575

 Score = 38.8 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 9   KIVFDIETT---GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKN-SPEALKLH 63
            IV D+E T   G    +  +IE   V +   + T    FQ ++ P      S    +L 
Sbjct: 52  YIVLDLEATCEAGRRITDAEVIEFPMVLVDPRTATQVAEFQRYVRPVKNPMLSRFCTELT 111

Query: 64  GITDEFLKDKPSFSSIFSEFWDFF 87
           GIT   +  +  F  ++ E   F 
Sbjct: 112 GITQNMVSHRDPFPVVYCEALQFL 135


>gi|311743281|ref|ZP_07717088.1| possible DNA polymerase III subunit epsilon [Aeromicrobium marinum
           DSM 15272]
 gi|311313349|gb|EFQ83259.1| possible DNA polymerase III subunit epsilon [Aeromicrobium marinum
           DSM 15272]
          Length = 278

 Score = 38.8 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 10/125 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ETTG+D   DR++      L D  +        + P G      A  +HG+    L+
Sbjct: 59  LDLETTGVDPLRDRVVSFAL--LDDQVER----SGLVDP-GVPIPEGASAVHGLDAAALR 111

Query: 72  DKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             P+     +E  D+     ++    +  NA +D+  + AE +R      D SR++    
Sbjct: 112 GAPAPRGALTEVLDWVQQVVDRGVPLVVFNAPYDLTMLRAEAERWGLVQPDWSRLLVIDP 171

Query: 129 IARRK 133
                
Sbjct: 172 YVVDW 176


>gi|227893216|ref|ZP_04011021.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
 gi|227864985|gb|EEJ72406.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
          Length = 177

 Score = 38.8 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 5/160 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHYPESA--CSLALVMVRNNEIVDR-FYTVINPQ-MLFDARNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K+ P+  +          +      AHNA+FD   +   L R N +      I   
Sbjct: 57  AEDVKNAPT-MAEVWPKIKGLYQPGMLVAAHNARFDTNVMRQSLARYNIEEPHYLVIDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            +    +     + L+++     + + H     +  ++  
Sbjct: 116 ATSKLFEPELPNHKLDTVSSTLDVELWHHHNALSDSEACA 155


>gi|154338249|ref|XP_001565349.1| phosphotransferase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 574

 Score = 38.8 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 9   KIVFDIETT---GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKN-SPEALKLH 63
            IV D+E T   G    +  +IE   V +   + T    FQ ++ P      S    +L 
Sbjct: 52  YIVLDLEATCEAGRRITDAEVIEFPMVLVDPRTATQVAEFQRYVRPVKNPMLSRFCTELT 111

Query: 64  GITDEFLKDKPSFSSIFSEFWDFF 87
           GIT   +  +  F  ++ E   F 
Sbjct: 112 GITQNMVSHRDPFPVVYCEALQFL 135


>gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7]
 gi|89517759|gb|EAS20415.1| DNA  polymerase I [Flavobacteria bacterium BBFL7]
          Length = 946

 Score = 38.8 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 4   KNKMRK--IVFDIETTGLDSKNDRIIEIG 30
           ++ M++  + FD ETTGLD     ++ I 
Sbjct: 367 QSLMQQSSVCFDTETTGLDPLTAELVGIA 395


>gi|261364839|ref|ZP_05977722.1| oligoribonuclease [Neisseria mucosa ATCC 25996]
 gi|288566880|gb|EFC88440.1| oligoribonuclease [Neisseria mucosa ATCC 25996]
          Length = 182

 Score = 38.8 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD + +RIIE+  +
Sbjct: 11 LDMEMTGLDPERERIIEVAMI 31


>gi|1550617|dbj|BAA12312.1| RNase T [Vibrio alginolyticus]
          Length = 125

 Score = 38.8 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCP 50
          +V D+ET G +++ D ++EI  V L    D       T    + P
Sbjct: 20 VVVDVETAGFNAQTDALLEICTVTLKMDEDGVLHPASTIHFHVEP 64


>gi|238854851|ref|ZP_04645181.1| DNA polymerase III alpha chain [Lactobacillus jensenii 269-3]
 gi|260664138|ref|ZP_05864991.1| DNA polymerase subunit III alpha [Lactobacillus jensenii SJ-7A-US]
 gi|282933929|ref|ZP_06339277.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
 gi|313472352|ref|ZP_07812844.1| exonuclease [Lactobacillus jensenii 1153]
 gi|238832641|gb|EEQ24948.1| DNA polymerase III alpha chain [Lactobacillus jensenii 269-3]
 gi|239529790|gb|EEQ68791.1| exonuclease [Lactobacillus jensenii 1153]
 gi|260562024|gb|EEX27993.1| DNA polymerase subunit III alpha [Lactobacillus jensenii SJ-7A-US]
 gi|281302018|gb|EFA94272.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
          Length = 177

 Score = 38.8 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 5/160 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         + +H IT
Sbjct: 1   MNFIAMDFETANRHPESA--CSLALVMVRNNKIADR-FYTVINPQ-MPFDGRNISVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +KD P+  +          +      AHNAKFD   +   L R +        I   
Sbjct: 57  PSDVKDAPT-MAEVWPKIKDLYQPGMLVAAHNAKFDANVLKMSLARYDIAEPHYLVIDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            +    +     + LN++ +   + + H     +  ++  
Sbjct: 116 KTSRLFEPDLPNHKLNTVSEALDVELWHHHNALSDSEACA 155


>gi|89255617|ref|YP_512978.1| oligoribonuclease [Francisella tularensis subsp. holarctica LVS]
 gi|134302673|ref|YP_001122642.1| oligoribonuclease [Francisella tularensis subsp. tularensis
          WY96-3418]
 gi|156501565|ref|YP_001427630.1| oligoribonuclease [Francisella tularensis subsp. holarctica
          FTNF002-00]
 gi|167010118|ref|ZP_02275049.1| oligoribonuclease [Francisella tularensis subsp. holarctica
          FSC200]
 gi|187932223|ref|YP_001892208.1| oligoribonuclease [Francisella tularensis subsp. mediasiatica
          FSC147]
 gi|254367012|ref|ZP_04983048.1| oligoribonuclease [Francisella tularensis subsp. holarctica 257]
 gi|254368614|ref|ZP_04984630.1| oligoribonuclease [Francisella tularensis subsp. holarctica
          FSC022]
 gi|290953723|ref|ZP_06558344.1| oligoribonuclease [Francisella tularensis subsp. holarctica
          URFT1]
 gi|295312909|ref|ZP_06803630.1| oligoribonuclease [Francisella tularensis subsp. holarctica
          URFT1]
 gi|122501292|sp|Q2A5M3|ORN_FRATH RecName: Full=Oligoribonuclease
 gi|166216258|sp|A7N9M1|ORN_FRATF RecName: Full=Oligoribonuclease
 gi|166216260|sp|A4J020|ORN_FRATW RecName: Full=Oligoribonuclease
 gi|89143448|emb|CAJ78624.1| Oligoribonuclease [Francisella tularensis subsp. holarctica LVS]
 gi|134050450|gb|ABO47521.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418]
 gi|134252838|gb|EBA51932.1| oligoribonuclease [Francisella tularensis subsp. holarctica 257]
 gi|156252168|gb|ABU60674.1| oligoribonuclease [Francisella tularensis subsp. holarctica
          FTNF002-00]
 gi|157121517|gb|EDO65708.1| oligoribonuclease [Francisella tularensis subsp. holarctica
          FSC022]
 gi|187713132|gb|ACD31429.1| oligoribonuclease (3'->5' exoribonuclease) [Francisella
          tularensis subsp. mediasiatica FSC147]
          Length = 178

 Score = 38.8 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD  + +IIEI A+
Sbjct: 10 IDLEMTGLDVDSCKIIEIAAI 30


>gi|145633650|ref|ZP_01789377.1| oligoribonuclease [Haemophilus influenzae 3655]
 gi|145635428|ref|ZP_01791129.1| oligoribonuclease [Haemophilus influenzae PittAA]
 gi|229845250|ref|ZP_04465383.1| oligoribonuclease [Haemophilus influenzae 6P18H1]
 gi|144985527|gb|EDJ92343.1| oligoribonuclease [Haemophilus influenzae 3655]
 gi|145267302|gb|EDK07305.1| oligoribonuclease [Haemophilus influenzae PittAA]
 gi|229811845|gb|EEP47541.1| oligoribonuclease [Haemophilus influenzae 6P18H1]
          Length = 182

 Score = 38.8 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+ + +RIIEI 
Sbjct: 11 IDLEMTGLEPEKERIIEIA 29


>gi|115379892|ref|ZP_01466953.1| DNA polymerase B, exonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|310817667|ref|YP_003950025.1| DNA polymerase [Stigmatella aurantiaca DW4/3-1]
 gi|115363108|gb|EAU62282.1| DNA polymerase B, exonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|309390739|gb|ADO68198.1| DNA polymerase [Stigmatella aurantiaca DW4/3-1]
          Length = 802

 Score = 38.8 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 10/15 (66%), Positives = 13/15 (86%)

Query: 12  FDIETTGLDSKNDRI 26
           FD+ETTGL+  +DRI
Sbjct: 161 FDLETTGLEPDHDRI 175


>gi|297559543|ref|YP_003678517.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis
          dassonvillei subsp. dassonvillei DSM 43111]
 gi|296843991|gb|ADH66011.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
          dassonvillei subsp. dassonvillei DSM 43111]
          Length = 216

 Score = 38.4 bits (87), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN 51
           D E TGLD + D +IE+  +      +  +    V + P 
Sbjct: 8  IDCEMTGLDFERDALIEVACLITDGELNILDEGVDVVIRPP 48


>gi|254448875|ref|ZP_05062331.1| oligoribonuclease [gamma proteobacterium HTCC5015]
 gi|198261565|gb|EDY85854.1| oligoribonuclease [gamma proteobacterium HTCC5015]
          Length = 185

 Score = 38.4 bits (87), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD+ ND IIEI 
Sbjct: 15 IDLEMTGLDTVNDEIIEIA 33


>gi|115314122|ref|YP_762845.1| oligoribonuclease [Francisella tularensis subsp. holarctica
          OSU18]
 gi|122325833|sp|Q0BNX6|ORN_FRATO RecName: Full=Oligoribonuclease
 gi|115129021|gb|ABI82208.1| oligoribonuclease [Francisella tularensis subsp. holarctica
          OSU18]
          Length = 178

 Score = 38.4 bits (87), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD  + +IIEI A+
Sbjct: 10 IDLEMTGLDVDSCKIIEIAAI 30


>gi|260102518|ref|ZP_05752755.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           helveticus DSM 20075]
 gi|260083660|gb|EEW67780.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           helveticus DSM 20075]
 gi|328461804|gb|EGF34034.1| DNA polymerase III alpha chain [Lactobacillus helveticus MTCC 5463]
          Length = 177

 Score = 38.4 bits (87), Expect = 0.81,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 5/160 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + D    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHFPESA--CSLALVMVRDNKIVDR-FYTVINPQ-MSFDARNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +K+ P+  +          +      AHNA+FD   +   L R N +      I   
Sbjct: 57  ADDVKNAPT-MAEVWPKIKGLYQPGMLVAAHNARFDTNVMRQSLARYNIEEPHYLVIDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            +    +     + L+++     + + H     +  ++  
Sbjct: 116 ATSKLFEPELPNHKLDTVSDALDVELWHHHNALSDSEACA 155


>gi|116666695|pdb|1ZBU|A Chain A, Crystal Structure Of Full-Length 3'-Exonuclease
 gi|116666696|pdb|1ZBU|B Chain B, Crystal Structure Of Full-Length 3'-Exonuclease
 gi|116666697|pdb|1ZBU|C Chain C, Crystal Structure Of Full-Length 3'-Exonuclease
 gi|116666698|pdb|1ZBU|D Chain D, Crystal Structure Of Full-Length 3'-Exonuclease
          Length = 349

 Score = 38.4 bits (87), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPN 51
           + D E T   G   +    IIE   V L  ++ +   TFQ ++ P 
Sbjct: 132 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPE 177


>gi|254516802|ref|ZP_05128860.1| oligoribonuclease [gamma proteobacterium NOR5-3]
 gi|219674307|gb|EED30675.1| oligoribonuclease [gamma proteobacterium NOR5-3]
          Length = 184

 Score = 38.4 bits (87), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          MI +     +  D+E TGL  + DR+IEI 
Sbjct: 1  MINEQ--NLVWVDLEMTGLVPETDRVIEIA 28


>gi|282164255|ref|YP_003356640.1| hypothetical protein MCP_1585 [Methanocella paludicola SANAE]
 gi|282156569|dbj|BAI61657.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 198

 Score = 38.4 bits (87), Expect = 0.82,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 56/178 (31%), Gaps = 14/178 (7%)

Query: 11  VFDIETTGL------DSKN-DRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPE 58
           V D ETTGL      +    D  I IGAV      +    +        +       + +
Sbjct: 6   VIDTETTGLGKFDRANPGRVDYPISIGAVVADVNVVKKQVRCVDGMYSLIRIPDTSKADD 65

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDP 117
            + +HGI  E L   P+ + +  +    F +       A N  FD  F++   +     P
Sbjct: 66  TMLIHGILPEELDSAPAPTQVCLDLKALFAKYEAMPVGAWNYHFDKHFVDVLFRMARMLP 125

Query: 118 LD-PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                R +     +R +     +  +    R     +       L     L+    ++
Sbjct: 126 PSLVWREMMPERYSRLERYVQNHVTHDGVLRLEAHNAFNDCIRTLAVHAALNGYTFEL 183


>gi|332373288|gb|AEE61785.1| unknown [Dendroctonus ponderosae]
          Length = 220

 Score = 38.4 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/166 (8%), Positives = 39/166 (23%), Gaps = 3/166 (1%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D+E TGL+   D+I+E+  +    D +      ++ +                  
Sbjct: 44  RLVWIDMEMTGLNVDQDKIMEVACIVTDTDLNIVAEGLEIVINQPKETLDNMHEWCVKQH 103

Query: 67  DEFLKDKPSFSSIF--SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            +    +    S     +  D   +     +  +     G      +      +      
Sbjct: 104 GKTGLTEACLKSQTSLEQAEDSIMDFLRAHVTPHCSPLAGNSVYMDRFFLIKYMPKVHDY 163

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
               I             +      +                ++++
Sbjct: 164 LHYRIVDVSTIKELCRRWNTPVYKSVPKKEFQHRAQCDIKESINEL 209


>gi|311741567|ref|ZP_07715391.1| probable DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303737|gb|EFQ79816.1| probable DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 442

 Score = 38.4 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDEF 69
             D+ET   +     I +IGAV   D  +T+ R++     P     +   + +HGIT + 
Sbjct: 102 AVDVET--ANDNWGSICQIGAVRFRDGQETDSRSWLCTPPPGLEHFADINVSIHGITADD 159

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           +K  P+F+ +  E +DF        +AHNA+FD
Sbjct: 160 VKGAPAFADVAKELFDFLGG--DVLVAHNAQFD 190


>gi|66472468|ref|NP_001018476.1| ERI1 exoribonuclease 2 [Danio rerio]
 gi|82228769|sp|Q502M8|ERI2_DANRE RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease
           domain-containing protein 1
 gi|63100865|gb|AAH95637.1| Zgc:111991 [Danio rerio]
          Length = 555

 Score = 38.4 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 60/234 (25%), Gaps = 16/234 (6%)

Query: 10  IVFDIETTG---LDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           I+ D E+T      S    IIE  AV L +        F  ++ P  R   S    +L G
Sbjct: 36  IIIDFESTCWREKSSSGQEIIEFPAVLLSVCSGAVESEFHSYVQPQERPVLSAFCTELTG 95

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT + +   P    + S F  +      E          G   +          D    +
Sbjct: 96  ITQDQVDSAPPLHVVLSRFSRWLRSLQEERGVVFLTDSSGAAPSAQLCAFVTWSDWDLGV 155

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ---- 180
             L   +RK  S    L +            +          L D+ I+           
Sbjct: 156 CLLYECKRKQLSVPEALKNWIDLRATYKLFYN-RKPKGLRGALLDLGIEFTGREHSGLVD 214

Query: 181 ----INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
                    +   D              +  R     + +   E   H   ++ 
Sbjct: 215 ARNTALLAQRMMTDGCQLSITSPERRAQVKPRPHTRPSGL--RERHTHLTNVKN 266


>gi|117919043|ref|YP_868235.1| oligoribonuclease [Shewanella sp. ANA-3]
 gi|166216589|sp|A0KSR0|ORN_SHESA RecName: Full=Oligoribonuclease
 gi|117611375|gb|ABK46829.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp.
          ANA-3]
          Length = 181

 Score = 38.4 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+   DR+IEI 
Sbjct: 11 IDLEMTGLEPDVDRVIEIA 29


>gi|331646986|ref|ZP_08348085.1| putative cytoplasmic protein [Escherichia coli M605]
 gi|331044303|gb|EGI16434.1| putative cytoplasmic protein [Escherichia coli M605]
          Length = 382

 Score = 38.4 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 44/167 (26%), Gaps = 15/167 (8%)

Query: 13  DIETTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           D E+TGL   +D      II    V L++           +CP        +        
Sbjct: 9   DTESTGLSPASDALPETAIISDTGVPLVN---------TLICPPDTFK-ARSAAQAAHCI 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                +  F+            Q+ + I +NA FD  F    L                +
Sbjct: 59  TPAMVRDKFTPDKPASRIRTAVQDQDVIIYNASFDASFPGDLLAGARSVQCCMLARARHV 118

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                 H   R                  KH AL D+     V+  M
Sbjct: 119 GEWSGWHGDWRLHRLDQAAAAVCFDWSGDKHRALADARACRAVWQFM 165


>gi|290998255|ref|XP_002681696.1| predicted protein [Naegleria gruberi]
 gi|284095321|gb|EFC48952.1| predicted protein [Naegleria gruberi]
          Length = 185

 Score = 38.4 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           D+E TGLD  +D I+EI  +               +
Sbjct: 13 VDMEMTGLDIDSDHILEIAVIITDGNLNIIAQLDSLI 49


>gi|213409417|ref|XP_002175479.1| 3'-5' exonuclease eri-1 [Schizosaccharomyces japonicus yFS275]
 gi|212003526|gb|EEB09186.1| 3'-5' exonuclease eri-1 [Schizosaccharomyces japonicus yFS275]
          Length = 311

 Score = 38.4 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 43/138 (31%), Gaps = 10/138 (7%)

Query: 3   RKNKMRKI-VFDIETT-----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN 55
           +  K+R + V D+E T     G    N  IIE   +    +  +    F  ++ P     
Sbjct: 58  KGMKLRYLLVVDVEATCEEGCGFSYMN-EIIEFPCLLYDLEQKRIIDEFHTYVKPRRIPT 116

Query: 56  -SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH-NAKFDVGFINAELQRI 113
            S    +L  I  + + + P F ++     +F ++ + + I   N      +        
Sbjct: 117 LSNYCKELTKIPQKLIDNAPPFKTVLDLLHEFLSKHDDKLIPPVNGPNTFEWSRLPKTAY 176

Query: 114 NKDPLDPSRIIDTLSIAR 131
           +                 
Sbjct: 177 HFRSQKNWAWACDGPWDM 194


>gi|209154444|gb|ACI33454.1| Histone mRNA 3-exonuclease 1 [Salmo salar]
          Length = 346

 Score = 38.4 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 16/196 (8%)

Query: 11  VFDIETTGL--DSK--NDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           V D E T    +       IIE   V L  ++ +   TFQ ++ P      S   +KL G
Sbjct: 129 VVDFEATCEQDNPADFTHEIIEFPMVLLNTHTLEIEDTFQEYVRPEVNTQLSEFCVKLTG 188

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQN---------AEWIAHNAKFDVGFINAELQRINK 115
           IT + + D  +F  +  +   +  E+              + +    +            
Sbjct: 189 ITQKMVDDADTFPDVLEQVVLWLQEKELGTKYKYTLLTDGSWDMSKFMNTQCRLNSLRYP 248

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I  L     K P ++  L+S+ ++ G+    R  H  L DS  ++ + ++M+
Sbjct: 249 QFAKKWINIKKLYGNFYKVPRTQTKLSSMLEKLGLKYEGRP-HSGLDDSRNIAHIAMRML 307

Query: 176 VGGSQINFGFKTNEDR 191
             G Q+    + +E +
Sbjct: 308 QDGCQLRINERMHEGQ 323


>gi|145296472|ref|YP_001139293.1| oligoribonuclease [Corynebacterium glutamicum R]
 gi|166216072|sp|A4QGM5|ORN_CORGB RecName: Full=Oligoribonuclease
 gi|140846392|dbj|BAF55391.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 219

 Score = 38.4 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD K   I+E+ A+
Sbjct: 18 RLVWVDLEMTGLDLKRHVIVEVAAL 42


>gi|50310933|ref|XP_455489.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644625|emb|CAG98197.1| KLLA0F08998p [Kluyveromyces lactis]
          Length = 306

 Score = 38.4 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 2/57 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALKLHGIT 66
            D E TGLD  ND+IIE+  +             ++  +  +               
Sbjct: 68  IDCEMTGLDHINDKIIEVCCIITDGQLNVADEDGYESVIHYDKSIMDNMNEWCINQH 124


>gi|19553671|ref|NP_601673.1| oligoribonuclease [Corynebacterium glutamicum ATCC 13032]
 gi|62391312|ref|YP_226714.1| oligoribonuclease [Corynebacterium glutamicum ATCC 13032]
 gi|23821913|sp|Q8NMU1|ORN_CORGL RecName: Full=Oligoribonuclease
 gi|21325244|dbj|BAB99866.1| Oligoribonuclease (3'->5' exoribonuclease) [Corynebacterium
          glutamicum ATCC 13032]
 gi|41326653|emb|CAF21135.1| Oligoribonuclease (3'->5' exoribonuclease) [Corynebacterium
          glutamicum ATCC 13032]
          Length = 219

 Score = 38.4 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD K   I+E+ A+
Sbjct: 18 RLVWVDLEMTGLDLKRHVIVEVAAL 42


>gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 879

 Score = 38.4 bits (87), Expect = 0.84,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 50/184 (27%), Gaps = 20/184 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD ETTGLD+K  +I+                F   +  N     P      G+ ++ 
Sbjct: 319 IAFDTETTGLDTKEAKIV---------------GFSFCMNENEAFYVPLTHNYLGVGEQI 363

Query: 70  -----LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                 K      + F    +   +        +      + +  +    K+P     + 
Sbjct: 364 SLQSAKKAIEVIFNHFVIGHNLKYDFKIIQNNFDLNLPQKYADTMILAWLKNPSLRVNMD 423

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           D               L    + +      ++   A  D+++    Y+  +         
Sbjct: 424 DLALRLFNYETLHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNLETPLLE 483

Query: 185 FKTN 188
              N
Sbjct: 484 LAKN 487


>gi|317507722|ref|ZP_07965427.1| exonuclease [Segniliparus rugosus ATCC BAA-974]
 gi|316253975|gb|EFV13340.1| exonuclease [Segniliparus rugosus ATCC BAA-974]
          Length = 202

 Score = 38.4 bits (87), Expect = 0.85,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37
           D E TGL   +D++IEI A+     
Sbjct: 11 IDCEMTGLRPGHDQLIEIAALVTDGD 36


>gi|224827136|ref|ZP_03700232.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum
          2002]
 gi|224600645|gb|EEG06832.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum
          2002]
          Length = 202

 Score = 38.4 bits (87), Expect = 0.85,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 16 TTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNG 52
          TT LD     ++ IGAV L  +   T+    + + P  
Sbjct: 37 TTSLDVAEAELLTIGAVRLSGNRIVTSEALDLLVKPGR 74


>gi|73536580|ref|XP_847714.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|321438628|emb|CBZ12387.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 405

 Score = 38.4 bits (87), Expect = 0.85,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 60/188 (31%), Gaps = 14/188 (7%)

Query: 10  IVFDIETTGLDSKN---DRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKN-SPEALKL 62
           IV D+E T   +       +IEI  V +          R+F  F+ P      +P   +L
Sbjct: 77  IVVDVEATCEQNNRNYPHEVIEIPGVLINVRTGQVDRARSFHTFVKPWRNPRLTPFCTQL 136

Query: 63  HGITDEFLKDKPS----FSSIFSEFWDFFNEQNAEWIAHNAKFDVG---FINAELQRINK 115
            GIT E +   PS           +W+          A +  +D       +  L+    
Sbjct: 137 TGITQEVVDAAPSITEAIQLFEKWYWETIPRGAKTIFAADGPWDFKNFIHEHHILRDHVG 196

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P      +D  +    +             R          H    D++ ++ + + MM
Sbjct: 197 FPSIFYEYLDIRTTFAHRLNHGVPIKLDAMLRKMNLRFDGRPHNGFDDAYNIARLAVAMM 256

Query: 176 VGGSQINF 183
             G  ++F
Sbjct: 257 KAGCVLDF 264


>gi|68535589|ref|YP_250294.1| oligoribonuclease [Corynebacterium jeikeium K411]
 gi|68263188|emb|CAI36676.1| putative oligoribonuclease [Corynebacterium jeikeium K411]
          Length = 210

 Score = 38.4 bits (87), Expect = 0.85,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D E TGLD     ++EI  +
Sbjct: 13 RLVWVDCEMTGLDPDQHVLVEIAVI 37


>gi|4929697|gb|AAD34109.1|AF151872_1 CGI-114 protein [Homo sapiens]
          Length = 205

 Score = 38.4 bits (87), Expect = 0.86,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 1  MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32
          M     M  R +  D+E TGLD + D+IIE+  +
Sbjct: 1  MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 34


>gi|229087422|ref|ZP_04219556.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-44]
 gi|228695844|gb|EEL48695.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-44]
          Length = 207

 Score = 38.4 bits (87), Expect = 0.87,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 53/182 (29%), Gaps = 16/182 (8%)

Query: 9   KIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPE 58
            I  D E T         G   +   IIE+G V +++      T+  ++ P      +  
Sbjct: 6   FIFLDFEFTMPQNRKKPKGFFPE---IIEVGLVSVVN-CVVEDTYASYVRPETFSCLTER 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             K  GI  E +    SF  +  +   +        +           +         P 
Sbjct: 62  CKKFLGIKQEAVDGGISFLELVEKLAQYEKRCQTTIVTWGNMDMKVLKHNCEAVGVTFPF 121

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                  +L   R     ++  L    + YG       KH   LD  + +    K++   
Sbjct: 122 SGECRDLSLEYKRFFGERNQTGLWKAIEAYGKV--GTGKHHCALDDAMTTYNIFKLVEKD 179

Query: 179 SQ 180
            +
Sbjct: 180 KE 181


>gi|329123183|ref|ZP_08251752.1| oligoribonuclease [Haemophilus aegyptius ATCC 11116]
 gi|327471528|gb|EGF16972.1| oligoribonuclease [Haemophilus aegyptius ATCC 11116]
          Length = 182

 Score = 38.4 bits (87), Expect = 0.88,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+ + +RIIEI 
Sbjct: 11 IDLEMTGLEPEKERIIEIA 29


>gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
 gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 879

 Score = 38.4 bits (87), Expect = 0.88,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 10  IVFDIETTGLDSKNDRII 27
           I FD ETTGLD+K  +I+
Sbjct: 319 IAFDTETTGLDTKEAKIV 336


>gi|86153587|ref|ZP_01071790.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85842548|gb|EAQ59760.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 879

 Score = 38.4 bits (87), Expect = 0.88,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 10  IVFDIETTGLDSKNDRII 27
           I FD ETTGLD+K  +I+
Sbjct: 319 IAFDTETTGLDTKEAKIV 336


>gi|300858788|ref|YP_003783771.1| hypothetical protein cpfrc_01371 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686242|gb|ADK29164.1| hypothetical protein cpfrc_01371 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206493|gb|ADL10835.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis C231]
 gi|302331048|gb|ADL21242.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276735|gb|ADO26634.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis I19]
          Length = 453

 Score = 38.4 bits (87), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 3/95 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D+ET   +     I +IG V++ D   T++  +    P    N      +      
Sbjct: 106 FAAVDVET--ANDDWGSICQIGVVKVKDGVITDKC-EWLCQPPAAINHFAPANIAIHGIR 162

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
               K +                    AHNA+FD+
Sbjct: 163 PNDVKTAQPFSECFAEMLSFVGKLPLAAHNAQFDM 197


>gi|162449255|ref|YP_001611622.1| exonuclease [Sorangium cellulosum 'So ce 56']
 gi|161159837|emb|CAN91142.1| predicted exonuclease [Sorangium cellulosum 'So ce 56']
          Length = 191

 Score = 38.4 bits (87), Expect = 0.88,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 9   KIVFDIETT----GLDSKN-DRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKN-SPEALK 61
            +V D+E T    G   +    IIEIGAV +   +         F+ P  R   +    K
Sbjct: 8   FLVIDLEATCDEEGRIPERIMEIIEIGAVLVDGATLEPVSELATFVRPVIRPRLTEFCTK 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  IT   +   P+F    +    F  ++ A + +        F     +     PL   
Sbjct: 68  LTTITQADVDAAPTFPEAIAALGRFVGQREALFCSWGDYDRKQFEIDAARWGVPLPLQGH 127

Query: 122 RIID 125
             I 
Sbjct: 128 MNIK 131


>gi|170720191|ref|YP_001747879.1| exonuclease I [Pseudomonas putida W619]
 gi|169758194|gb|ACA71510.1| Exodeoxyribonuclease I [Pseudomonas putida W619]
          Length = 478

 Score = 38.4 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALK 61
          D ETTG++ + DR +++  V    + ++ +    ++  P+       A  
Sbjct: 9  DYETTGINPRCDRPLQVAGVRTDFELNEIDEPISLYCRPSDDILPHPAAC 58


>gi|116626444|ref|YP_828600.1| DNA polymerase B region [Candidatus Solibacter usitatus Ellin6076]
 gi|116229606|gb|ABJ88315.1| DNA polymerase B region [Candidatus Solibacter usitatus Ellin6076]
          Length = 784

 Score = 38.4 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 11/15 (73%), Positives = 13/15 (86%)

Query: 12  FDIETTGLDSKNDRI 26
           FD+ETTGLD+  DRI
Sbjct: 158 FDLETTGLDAGRDRI 172


>gi|326795181|ref|YP_004313001.1| exodeoxyribonuclease I [Marinomonas mediterranea MMB-1]
 gi|326545945|gb|ADZ91165.1| Exodeoxyribonuclease I [Marinomonas mediterranea MMB-1]
          Length = 482

 Score = 38.4 bits (87), Expect = 0.90,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 49/162 (30%), Gaps = 6/162 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC--PNGRKNSPEALKLHGITDE 68
           FD ETTG+D   DR ++   +    +++       ++     +   N    L       +
Sbjct: 12  FDFETTGVDPAKDRPMQFAGIRTDLEFNPIGDPIMLYCKLAEDVLPNPDACLLTGITPQD 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             ++    +   +E     ++     + +N    + F +  ++             +  +
Sbjct: 72  ANREGLCEAEFMAEIEKELSQPGTCALGYN---TLRFDDEVVRYGFYRNFIDPYAREWQN 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              R        +    +  GI      +    L   LL+  
Sbjct: 129 KCSRWDVIDLVRMTYAMRPDGIKWPKNDEGKVSLKLELLTKA 170


>gi|330447523|ref|ZP_08311171.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491714|dbj|GAA05668.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 185

 Score = 38.4 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 56/156 (35%), Gaps = 5/156 (3%)

Query: 8   RKIVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R + FD+E      G  S+   IIEIG  EL  +  K  R  Q ++ P   + SP   +L
Sbjct: 5   RIVCFDLEMCCWNDGRTSRTGEIIEIGVAELDLNTGKIVRRAQHYVRPAKDEISPFCTEL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI  E ++      S+  +  +       +  A     D       L +  K P     
Sbjct: 65  TGIKPEIVEKNGKPLSVILKSIEQKFGGRHKIYAAWGHDDRILKKECLAKDLKVPFREYL 124

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            + TL   +R   + R    +  +  G+    R   
Sbjct: 125 NLATLFKLQRHVTNKRLGQRAAMEIAGVEWEGRQHS 160


>gi|139473144|ref|YP_001127859.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes str.
          Manfredo]
 gi|134271390|emb|CAM29610.1| putative exonuclease [Streptococcus pyogenes str. Manfredo]
          Length = 208

 Score = 38.4 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 10/51 (19%)

Query: 4  KNKMR----KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFL 48
          +  M+     I FD+E    ++ ND   II++ AV+   + +   +F  ++
Sbjct: 11 EENMKHLDTYIAFDLE---FNTVNDVSHIIQVSAVKYDHHKEV-DSFDTYV 57


>gi|152986809|ref|YP_001349107.1| hypothetical protein PSPA7_3753 [Pseudomonas aeruginosa PA7]
 gi|150961967|gb|ABR83992.1| hypothetical protein PSPA7_3753 [Pseudomonas aeruginosa PA7]
          Length = 183

 Score = 38.4 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 38/116 (32%), Gaps = 10/116 (8%)

Query: 9   KIVFDIE-TT--GLDS-KNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRK-NSPEAL 60
            +V D+E TT  G    +   IIEIGA  +            FQ F+ P  R   +    
Sbjct: 4   WLVIDLEATTAEGGWPLEEMEIIEIGATLVAAADAREL--DHFQRFVRPLRRPLLTHFCR 61

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            L  I+   +     F +++  F  +  +         +  D      E +     
Sbjct: 62  DLTHISQASVDGAAQFDAVWEAFERWLAQHRPRLAGWASWGDYDRRQLEQEWRQHR 117


>gi|50914940|ref|YP_060912.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes
          MGAS10394]
 gi|50904014|gb|AAT87729.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes
          MGAS10394]
          Length = 208

 Score = 38.4 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 10/51 (19%)

Query: 4  KNKMR----KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFL 48
          +  M+     I FD+E    ++ ND   II++ AV+   + +   +F  ++
Sbjct: 11 EENMKHLDTYIAFDLE---FNTVNDVSHIIQVSAVKYDHHKEV-DSFDTYV 57


>gi|15675683|ref|NP_269857.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes M1
          GAS]
 gi|13622898|gb|AAK34578.1| putative DNA polymerase III epsilon subunit [Streptococcus
          pyogenes M1 GAS]
          Length = 208

 Score = 38.4 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 10/51 (19%)

Query: 4  KNKMR----KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFL 48
          +  M+     I FD+E    ++ ND   II++ AV+   + +   +F  ++
Sbjct: 11 EENMKHLDTYIAFDLE---FNTVNDVSHIIQVSAVKYDHHKEV-DSFDTYV 57


>gi|302672277|ref|YP_003832237.1| exonuclease family protein [Butyrivibrio proteoclasticus B316]
 gi|302396750|gb|ADL35655.1| exonuclease family protein [Butyrivibrio proteoclasticus B316]
          Length = 311

 Score = 38.4 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 55/213 (25%), Gaps = 20/213 (9%)

Query: 7   MR-KIVFDIETTGLDSKND------------RIIEIGAVELLDYSKTNRTFQVFLCPNGR 53
           M+  I+FD+E     ++ D             I+EIGAV+L +  +    F   + P   
Sbjct: 1   MKNYIIFDLE----WNQGDAPVVENGKTLNFEIVEIGAVKLNEKKEKIGEFSRLIRPQVF 56

Query: 54  KNSPEALKL--HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           K          H   ++    +P              +            +         
Sbjct: 57  KQMHRITGKLIHLTMEDLESGEPFTDVADEFLKWCGEDPQFCSWGPLDLTEFQRNLDFFG 116

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    +        +            S              H AL D+   + ++
Sbjct: 117 MPLLSDRPIAFYDVQKLYSIAFDDGKSRKALSTVVDEMQMDKDIPFHRALADAEYTARIF 176

Query: 172 IKM-MVGGSQINFGFKTNEDRFFKEEKKTVPNI 203
            K+      +++F          +E K T  N 
Sbjct: 177 RKLGDKVLQRVSFDTYVTPKTRKQEIKITFDNY 209


>gi|283955763|ref|ZP_06373254.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792718|gb|EFC31496.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
          Length = 879

 Score = 38.4 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 10  IVFDIETTGLDSKNDRII 27
           I FD ETTGLD+K  +I+
Sbjct: 319 IAFDTETTGLDTKEAKIV 336


>gi|281421814|ref|ZP_06252813.1| exonuclease [Prevotella copri DSM 18205]
 gi|281404056|gb|EFB34736.1| exonuclease [Prevotella copri DSM 18205]
          Length = 140

 Score = 38.4 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 3/142 (2%)

Query: 34  LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE 93
           ++   +   ++   + P     S    ++HG+T E   +   F  +++E           
Sbjct: 2   IVRDGEIADSYYSLIKPEPEYYSYWNTRVHGLTQEDTMNADVFPKVWAEIAPKIEG--LP 59

Query: 94  WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS 153
            +AHNA FD G + A  Q    +  D        +  R+      N        Y     
Sbjct: 60  LVAHNAPFDEGCLKAVFQMYQMEYPDYEFHCTCRASRRKLGTLLPNHQLQTVAAY-CGYD 118

Query: 154 HRSKHGALLDSHLLSDVYIKMM 175
               H AL D+   + +  +++
Sbjct: 119 LTQHHNALADAEACAWIARELL 140


>gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 879

 Score = 38.4 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 10  IVFDIETTGLDSKNDRII 27
           I FD ETTGLD+K  +I+
Sbjct: 319 IAFDTETTGLDTKEAKIV 336


>gi|86151514|ref|ZP_01069729.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157414635|ref|YP_001481891.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81116]
 gi|315123903|ref|YP_004065907.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841861|gb|EAQ59108.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157385599|gb|ABV51914.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747275|gb|ADN90545.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni M1]
 gi|315017625|gb|ADT65718.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315931584|gb|EFV10550.1| DNA-directed DNA polymerase [Campylobacter jejuni subsp. jejuni
           327]
          Length = 879

 Score = 38.4 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 10  IVFDIETTGLDSKNDRII 27
           I FD ETTGLD+K  +I+
Sbjct: 319 IAFDTETTGLDTKEAKIV 336


>gi|297571046|ref|YP_003696820.1| exonuclease RNase T and DNA polymerase III [Arcanobacterium
          haemolyticum DSM 20595]
 gi|296931393|gb|ADH92201.1| Exonuclease RNase T and DNA polymerase III [Arcanobacterium
          haemolyticum DSM 20595]
          Length = 218

 Score = 38.4 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 10 IV-FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPN 51
          IV  D E TGLD + D ++EI  V         +    + + P 
Sbjct: 12 IVWIDCEMTGLDLEKDALVEIAIVVTDAELNPLDNGLDIVIKPP 55


>gi|114623465|ref|XP_519596.2| PREDICTED: histone mRNA 3' end-specific exonuclease isoform 2 [Pan
           troglodytes]
          Length = 298

 Score = 38.4 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 17/154 (11%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T   G   +    IIE   V L  ++ +   TFQ ++ P      S   + L G
Sbjct: 132 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTG 191

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT + +    +F  +  +  D+               ++G         +        + 
Sbjct: 192 ITQDQVDRADTFPQVLKKVIDWMKL-----------KELGTKYKYSLLTDGSWDMSKFLN 240

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
               ++R K+P       ++ K YG        H
Sbjct: 241 IQCQLSRLKYPPFAKKWINIRKSYGNFYKGEHPH 274


>gi|25028926|ref|NP_738980.1| oligoribonuclease [Corynebacterium efficiens YS-314]
 gi|259507990|ref|ZP_05750890.1| oligoribonuclease [Corynebacterium efficiens YS-314]
 gi|29611789|sp|Q8FMX9|ORN_COREF RecName: Full=Oligoribonuclease
 gi|23494213|dbj|BAC19180.1| putative oligoribonuclease [Corynebacterium efficiens YS-314]
 gi|259164485|gb|EEW49039.1| oligoribonuclease [Corynebacterium efficiens YS-314]
          Length = 221

 Score = 38.4 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD +   I+E+ A+
Sbjct: 20 RLVWVDLEMTGLDLERHVIVEVAAL 44


>gi|326802467|ref|YP_004320286.1| exonuclease RNase T and DNA polymerase III [Sphingobacterium sp.
           21]
 gi|326553231|gb|ADZ81616.1| Exonuclease RNase T and DNA polymerase III [Sphingobacterium sp.
           21]
          Length = 238

 Score = 38.4 bits (87), Expect = 0.93,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 63/217 (29%), Gaps = 18/217 (8%)

Query: 7   MRK--IVFDIETTGLDSK-------ND---RIIEIGAVEL-LDYSKTNRTFQVFLCPNGR 53
           M++  +  D ETTGL  K        D     +++  +    D  +  R    ++  +  
Sbjct: 1   MQEYLLFIDTETTGLPKKWTVGYSTKDNWPSAVQVAWIVFTKDGREIKRE-NFYVNEDDV 59

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINAE 109
             S +A  +H I D +L+          E       Q    +  +        +G     
Sbjct: 60  VVSRQAQLVHRIKDSYLRTFGVPRCAVMEKLSSDLRQFKPLVVGHFVALDFHVLGADFYR 119

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
               N             S    K P  +    +   +          H ALLD+   + 
Sbjct: 120 CAMENPLGDLRLFCTMLASSGYVKKPWIKYLRLNELYQELFEKELEKAHNALLDADATAK 179

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
            Y +++          +  + +  K+        S+ 
Sbjct: 180 SYFELVKRKEVTEETIEEQQVKLSKQLILDKSPWSIS 216


>gi|319896797|ref|YP_004134991.1| oligoribonuclease [Haemophilus influenzae F3031]
 gi|317432300|emb|CBY80653.1| oligoribonuclease [Haemophilus influenzae F3031]
          Length = 182

 Score = 38.4 bits (87), Expect = 0.93,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+ + +RIIEI 
Sbjct: 11 IDLEMTGLEPEKERIIEIA 29


>gi|229780998|ref|YP_001103540.2| oligoribonuclease [Saccharopolyspora erythraea NRRL 2338]
 gi|291007403|ref|ZP_06565376.1| oligoribonuclease [Saccharopolyspora erythraea NRRL 2338]
          Length = 221

 Score = 38.4 bits (87), Expect = 0.93,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D E TGLD   D +IEI A+
Sbjct: 4  RLVWIDCEMTGLDLGKDALIEIAAL 28


>gi|225575600|ref|ZP_03784210.1| hypothetical protein RUMHYD_03692 [Blautia hydrogenotrophica DSM
          10507]
 gi|225037194|gb|EEG47440.1| hypothetical protein RUMHYD_03692 [Blautia hydrogenotrophica DSM
          10507]
          Length = 319

 Score = 38.4 bits (87), Expect = 0.93,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 18/62 (29%)

Query: 7  MRKIVFDIETTGLDSKND-------------RIIEIGAVELLDYSKTNRTFQVFLCPNGR 53
          M  IV D+E                       IIEIGAV+L    +    F   + P   
Sbjct: 1  MNYIVMDLE-----WNQCPDGKEYANEKLPFEIIEIGAVKLNQNKEIVGRFHEIIRPQVY 55

Query: 54 KN 55
          K 
Sbjct: 56 KW 57


>gi|256789880|ref|ZP_05528311.1| hypothetical protein SlivT_35823 [Streptomyces lividans TK24]
 gi|289773763|ref|ZP_06533141.1| predicted protein [Streptomyces lividans TK24]
 gi|289703962|gb|EFD71391.1| predicted protein [Streptomyces lividans TK24]
          Length = 129

 Score = 38.4 bits (87), Expect = 0.94,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK 39
           D+ET+GL  + DR++ +  V L    +
Sbjct: 35 VDVETSGLVPRRDRVLSVAVVTLDADGE 62


>gi|118496683|ref|YP_897733.1| oligoribonuclease [Francisella tularensis subsp. novicida U112]
 gi|194323992|ref|ZP_03057767.1| exonuclease family protein [Francisella tularensis subsp.
          novicida FTE]
 gi|208780043|ref|ZP_03247386.1| exonuclease family protein [Francisella novicida FTG]
 gi|166216259|sp|A0Q414|ORN_FRATN RecName: Full=Oligoribonuclease
 gi|118422589|gb|ABK88979.1| oligoribonuclease (3'->5' exoribonuclease) [Francisella novicida
          U112]
 gi|194321889|gb|EDX19372.1| exonuclease family protein [Francisella tularensis subsp.
          novicida FTE]
 gi|208744047|gb|EDZ90348.1| exonuclease family protein [Francisella novicida FTG]
          Length = 178

 Score = 38.4 bits (87), Expect = 0.94,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD  + +IIEI A+
Sbjct: 10 IDLEMTGLDVDSCKIIEIAAI 30


>gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221]
 gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221]
 gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3]
          Length = 879

 Score = 38.4 bits (87), Expect = 0.94,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 50/184 (27%), Gaps = 20/184 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD ETTGLD+K  +I+                F   +  N     P      G+ ++ 
Sbjct: 319 IAFDTETTGLDTKEAKIV---------------GFSFCMNENEAFYVPLTHNYLGVGEQI 363

Query: 70  -----LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                 K      + F    +   +        +      + +  +    K+P     + 
Sbjct: 364 SLQSAKKAIEVIFNHFVIGHNLKYDFKIIQNNFDLNLPQKYADTMILAWLKNPSLRVNMD 423

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           D               L    + +      ++   A  D+++    Y+  +         
Sbjct: 424 DLALRLFNYETLHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNLETPLLE 483

Query: 185 FKTN 188
              N
Sbjct: 484 LAKN 487


>gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97]
          Length = 879

 Score = 38.4 bits (87), Expect = 0.94,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 10  IVFDIETTGLDSKNDRII 27
           I FD ETTGLD+K  +I+
Sbjct: 319 IAFDTETTGLDTKEAKIV 336


>gi|149927960|ref|ZP_01916210.1| oligoribonuclease [Limnobacter sp. MED105]
 gi|149823399|gb|EDM82632.1| oligoribonuclease [Limnobacter sp. MED105]
          Length = 191

 Score = 38.4 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD  ND++IE+  V
Sbjct: 3  VDMEMTGLDPFNDKVIEVAVV 23


>gi|332244613|ref|XP_003271468.1| PREDICTED: 3'-5' exoribonuclease 1 [Nomascus leucogenys]
          Length = 349

 Score = 38.4 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T   G   +    IIE   V L  ++     TFQ ++ P      S   + L G
Sbjct: 132 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTG 191

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +  +  D+   +              + +    +       +    
Sbjct: 192 ITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRLKYP 251

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G+       H  L DS  ++ + ++M+
Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMD-YDGRLHCGLDDSKNIARIAVRML 310

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 311 QDGCELRIN 319


>gi|281205101|gb|EFA79294.1| hypothetical protein PPL_07712 [Polysphondylium pallidum PN500]
          Length = 1364

 Score = 38.4 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 13/71 (18%)

Query: 9    KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             +  D+E     +  D I EI A+++     T++ F   + P              ++ +
Sbjct: 1119 FVALDLE-----AAGDAICEIAAIDM----TTSKCFTSMVNPG----PGAPFTYCPVSSQ 1165

Query: 69   FLKDKPSFSSI 79
             +   P   + 
Sbjct: 1166 EVTQLPHHWNR 1176


>gi|90413340|ref|ZP_01221333.1| oligoribonuclease [Photobacterium profundum 3TCK]
 gi|90325582|gb|EAS42051.1| oligoribonuclease [Photobacterium profundum 3TCK]
          Length = 181

 Score = 38.4 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  +IIEI 
Sbjct: 11 VDLEMTGLDPEIHQIIEIA 29


>gi|152979290|ref|YP_001344919.1| exonuclease [Actinobacillus succinogenes 130Z]
 gi|150841013|gb|ABR74984.1| exonuclease [Actinobacillus succinogenes 130Z]
          Length = 59

 Score = 38.4 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 7  MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
          M+  +  D ET   + +   +  IG + + +   + +T+   + P          
Sbjct: 1  MKDFVALDFET--ANRERSSVCSIGLMFVENRQIS-KTYYQLIKPVPHFYRSFNT 52


>gi|67524821|ref|XP_660472.1| hypothetical protein AN2868.2 [Aspergillus nidulans FGSC A4]
 gi|40744263|gb|EAA63439.1| hypothetical protein AN2868.2 [Aspergillus nidulans FGSC A4]
          Length = 802

 Score = 38.4 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 12  FDIETTGLDSKNDRIIEIGA 31
            D E TGLD   D I++I  
Sbjct: 621 IDCEMTGLDPTTDHILQICC 640


>gi|91775826|ref|YP_545582.1| oligoribonuclease [Methylobacillus flagellatus KT]
 gi|91709813|gb|ABE49741.1| Exonuclease [Methylobacillus flagellatus KT]
          Length = 183

 Score = 38.4 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          M+ ++    I  D+E +GL   +DRI+E+ AV
Sbjct: 1  MMPQHNDNLIWLDMEMSGLQPDSDRILEVAAV 32


>gi|161612020|gb|AAI55978.1| hypothetical protein LOC548900 [Xenopus (Silurana) tropicalis]
 gi|161612114|gb|AAI55988.1| hypothetical protein LOC548900 [Xenopus (Silurana) tropicalis]
          Length = 345

 Score = 38.4 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSK-NDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           V D E T   G  +     IIE   V L  ++ +    FQ ++ P      S   + L G
Sbjct: 128 VIDFEATCEEGNSTDYTHEIIEFPIVLLNTHTLEIEDVFQRYVRPEINPQLSEFCVNLTG 187

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115
           IT + +     F  +     D+  E+              + +    +       +    
Sbjct: 188 ITQDIVDKSDIFPDVLRSVVDWMREKELGTKYKYAILTDGSWDMSKFLNMQCRVSRLKYP 247

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P ++  L ++ ++ G+T   R   G     ++ + +   M+
Sbjct: 248 RFAKKWINIRKSYGNFYKVPRTQTKLTTMLEKLGMTYDGRLHSGVDDSKNI-ARIAAHML 306

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 307 QDGCELRVN 315


>gi|324999723|ref|ZP_08120835.1| oligoribonuclease [Pseudonocardia sp. P1]
          Length = 213

 Score = 38.4 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDY 37
          R +  D E TGLD  +D +IEI A+     
Sbjct: 4  RLVWIDCEMTGLDLGSDALIEIAALVTDGD 33


>gi|298253384|ref|ZP_06977176.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis 5-1]
 gi|297532779|gb|EFH71665.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis 5-1]
          Length = 261

 Score = 38.4 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 7/109 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQV-FLCPNGRKNSPEAL---KLHGI 65
           FD ETTG +   D I+    + L +     T        + P+   N   +         
Sbjct: 34  FDTETTGANIGKDAIVS-ATLVLRNPELAHTGDVVSTWLINPHQPMNPKASEVNGFTDEY 92

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             E   +        +        +N   +A+NA FD+  +  +L+  +
Sbjct: 93  LKEHGGEPEEELEFLARAVSMAQAKNIPLLAYNAPFDIAMLRHDLKHWH 141


>gi|238486688|ref|XP_002374582.1| RNA exonuclease Rex2, putative [Aspergillus flavus NRRL3357]
 gi|317144078|ref|XP_003189562.1| RNA exonuclease Rex2 [Aspergillus oryzae RIB40]
 gi|220699461|gb|EED55800.1| RNA exonuclease Rex2, putative [Aspergillus flavus NRRL3357]
          Length = 191

 Score = 38.4 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLDS+ D+II++   V   +    +   F+  +  +       +       
Sbjct: 13 IDCEMTGLDSEKDQIIQVCCFVTDANLQLLDPHGFETVIHASKTTMDNMSQWCIDTH 69


>gi|315037938|ref|YP_004031506.1| DNA polymerase III alpha chain [Lactobacillus amylovorus GRL 1112]
 gi|312276071|gb|ADQ58711.1| DNA polymerase III alpha chain [Lactobacillus amylovorus GRL 1112]
          Length = 177

 Score = 38.4 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 5/160 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHYPESA--CSLALVMVRNTEIVDR-FYTVINPQ-MPFDARNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K+ P+  +          +      AHNA+FD   +   L R N        I   
Sbjct: 57  AEDVKNAPT-MAEVWPKIKGLYQPGMLVAAHNARFDTNVMRQSLARYNISEPHYLVIDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            +  R +     + L+++     + + H     +  ++  
Sbjct: 116 TTSKRFEPELPNHKLDTVSDALDVELWHHHNALSDSEACA 155


>gi|300856782|ref|YP_003781766.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii
           DSM 13528]
 gi|300436897|gb|ADK16664.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii
           DSM 13528]
          Length = 436

 Score = 38.4 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 73/177 (41%), Gaps = 8/177 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   ++  +    +G   + +     + +   + P     + + + ++GIT +
Sbjct: 5   FVAIDFET--ANNNFNSACSLGIAAVKNNKICKKDY-FLIHPPTLDFNKKNISINGITPK 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID-TL 127
            +++ P F  I+++   +F++     IAHNA FD+  +   L   +    + + I    +
Sbjct: 62  DIENSPLFPDIWNDIHTYFDD--NIIIAHNAVFDMSVLKNCLLEYDISMPNFNYICSIPI 119

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           S            L    K +G+ + H   H +L D+   +++ I+ +    + N  
Sbjct: 120 STKLCGGKGIGKSLEDRAKYFGVDLGH--HHNSLDDAAACANLVIECIKRAHKKNLE 174


>gi|167751276|ref|ZP_02423403.1| hypothetical protein EUBSIR_02262 [Eubacterium siraeum DSM 15702]
 gi|167655783|gb|EDR99912.1| hypothetical protein EUBSIR_02262 [Eubacterium siraeum DSM 15702]
          Length = 319

 Score = 38.4 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 25 RIIEIGAVELLDYSKTNRTFQVFLCP 50
           II+IGAV + D   +   F  ++ P
Sbjct: 12 EIIQIGAVAVTDGIVSEDFFSEYVRP 37


>gi|228993630|ref|ZP_04153537.1| Sporulation inhibitor KapD [Bacillus pseudomycoides DSM 12442]
 gi|228999668|ref|ZP_04159244.1| Sporulation inhibitor KapD [Bacillus mycoides Rock3-17]
 gi|229007227|ref|ZP_04164828.1| Sporulation inhibitor KapD [Bacillus mycoides Rock1-4]
 gi|228753981|gb|EEM03418.1| Sporulation inhibitor KapD [Bacillus mycoides Rock1-4]
 gi|228760030|gb|EEM09000.1| Sporulation inhibitor KapD [Bacillus mycoides Rock3-17]
 gi|228766059|gb|EEM14706.1| Sporulation inhibitor KapD [Bacillus pseudomycoides DSM 12442]
          Length = 207

 Score = 38.4 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 54/182 (29%), Gaps = 16/182 (8%)

Query: 9   KIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPE 58
            +  D E T         G   +   IIE+G V ++D      T+  ++ P      +  
Sbjct: 6   FLFLDFEFTMPQNRKKPKGFFPE---IIEVGLVSVVD-CVVEDTYSSYVRPETFSCLTER 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             K  GI  E +    SF  +  +   +        +           +       + P 
Sbjct: 62  CKKFLGINQEAVDGGISFLELVEKLVQYEKRCQTTIVTWGNMDMKVLKHNCEAIGAEFPF 121

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                  +L   R     ++  L    + YG       KH   LD  + +    K++   
Sbjct: 122 SGQCRDLSLEYKRFFGERNQTGLWKAIEAYGKV--GTGKHHCALDDAITTYNIFKLVEKD 179

Query: 179 SQ 180
            +
Sbjct: 180 KE 181


>gi|254491492|ref|ZP_05104671.1| Exonuclease C-terminal domain family [Methylophaga thiooxidans
           DMS010]
 gi|224462970|gb|EEF79240.1| Exonuclease C-terminal domain family [Methylophaga thiooxydans
           DMS010]
          Length = 479

 Score = 38.4 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 61/208 (29%), Gaps = 7/208 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGITDEF 69
           D ET+G+D + DR ++   V    D +       ++  P+G    +   AL         
Sbjct: 8   DYETSGIDPRFDRPMQFAGVRTDEDLNIIGEPLMIYCKPSGDYLPHPQAALVTGLTPQLA 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            K+  + +    +  D         + +N+   + F +   +         +   +  S 
Sbjct: 68  EKEGLNEAEFIKQIHDELAAPGTCGVGYNS---LRFDDEFTRFTLFRNFYDAYAREWQSG 124

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGA-LLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             R        L    +  GI   +R           L +   I+       +   + T 
Sbjct: 125 NSRWDIIDMVRLTRALRPEGIHWPNREDGKPSFRLEDLTAANGIEHSGAHDALADVYATI 184

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           E     +  +      + +R +      
Sbjct: 185 EMARLIKNAQPKLYDYVFERRRKQTLAP 212


>gi|227495351|ref|ZP_03925667.1| exoribonuclease II [Actinomyces coleocanis DSM 15436]
 gi|226831221|gb|EEH63604.1| exoribonuclease II [Actinomyces coleocanis DSM 15436]
          Length = 207

 Score = 38.4 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 1  MIRKNKMRKIV-FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCP 50
          M      R +V  D E TGLD + D ++E+  V   +     +    + + P
Sbjct: 1  MTINYPARPLVWIDCEMTGLDVEKDALVEVAVVVTDEELNLLDPGIDLLIKP 52


>gi|313681469|ref|YP_004059207.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154329|gb|ADR33007.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 247

 Score = 38.4 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 69/215 (32%), Gaps = 7/215 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I+ D ETTG    +DRII++G + L   +     +          +           +
Sbjct: 3   KYILLDTETTGAG-DDDRIIQLGYMVLDGKNV--EVYNEMCSTEVAISYGAMEVHGITPE 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT- 126
                     +   +     N  +   I HNA FD+G +  E        +D  R     
Sbjct: 60  MIEGKPSCRETSAFQKLCELNTSDNVLIIHNAPFDLGMLTKENFSSQMRLIDTLRCARHL 119

Query: 127 ---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                  R ++   R  L  + +    ++    K    +   L+  +++  +    Q  +
Sbjct: 120 FDEEESHRLQYFRYRLGLYKIEQDEAESLGIEVKAHDAIGDVLVLKLFLTELRKRLQERY 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                 D+  +  K  V     LK  K     +T+
Sbjct: 180 EGANPIDKMVELTKTPVFYTRALKFGKYKGKTLTE 214


>gi|262273022|ref|ZP_06050841.1| oligoribonuclease [Grimontia hollisae CIP 101886]
 gi|262222932|gb|EEY74238.1| oligoribonuclease [Grimontia hollisae CIP 101886]
          Length = 181

 Score = 38.4 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  ++IEI 
Sbjct: 11 IDLEMTGLDPEVHKVIEIA 29


>gi|240170995|ref|ZP_04749654.1| oligoribonuclease [Mycobacterium kansasii ATCC 12478]
          Length = 215

 Score = 38.4 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)

Query: 7  MR-KIV-FDIETTGLDSKNDRIIEIGAV 32
          MR ++V  D E TGL+  +D++IEI  +
Sbjct: 1  MRDELVWIDCEMTGLNIASDKLIEIAVL 28


>gi|147921738|ref|YP_684442.1| hypothetical protein LRC94 [uncultured methanogenic archaeon RC-I]
 gi|110619838|emb|CAJ35116.1| hypothetical protein LRC94 [uncultured methanogenic archaeon RC-I]
          Length = 191

 Score = 38.4 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 15/126 (11%)

Query: 11  VFDIETTGL------DSKNDRI-IEIGAVELLDYSKTNR------TFQVFLCPNGRKNSP 57
           V D+E TGL      +  +D   + IG + L    +  +      +F   +         
Sbjct: 6   VVDLEMTGLGKFDKANPVDDDYPVSIGII-LAGVDEEGKAIRCLDSFHTLIRIPNPSKVE 64

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKD 116
           E    H I  E L+  P    +  +   F+ +       A N + D  F++   +    +
Sbjct: 65  ETSIFHHIYPEDLEAAPKPKEVCGQIRKFYEKHGEIPAAAWNHRVDRHFVDILFKMGKME 124

Query: 117 PLDPSR 122
                 
Sbjct: 125 SPIRKW 130


>gi|71911395|ref|YP_282945.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes
          MGAS5005]
 gi|71854177|gb|AAZ52200.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes
          MGAS5005]
          Length = 195

 Score = 38.4 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 9  KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFL 48
           I FD+E    ++ ND   II++ AV+   + +   +F  ++
Sbjct: 7  YIAFDLE---FNTVNDVSHIIQVSAVKYDHHKEV-DSFDTYV 44


>gi|325276506|ref|ZP_08142262.1| exonuclease I [Pseudomonas sp. TJI-51]
 gi|324098353|gb|EGB96443.1| exonuclease I [Pseudomonas sp. TJI-51]
          Length = 105

 Score = 38.4 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALK 61
          D ETTG++ + DR +++  +    D ++ +    ++  P        A  
Sbjct: 9  DYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPADDILPHPAAC 58


>gi|291222534|ref|XP_002731271.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 954

 Score = 38.4 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 12/127 (9%)

Query: 10  IVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETT  G+DS    I +I A      S   + F  ++ P  +   P A  + G+T 
Sbjct: 497 VVFDLETTSFGIDSS---ICQIAA------SYDGKIFDEYVDP-CQPIHPAASNVTGLTY 546

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              K   +F+ + +       E   EWI  N+            RI    +    ++D L
Sbjct: 547 TCGKLFHNFNLVPTLSQKDALESFIEWIPLNSVLVAHNCKNFDARILVSSVQRYGLLDKL 606

Query: 128 SIARRKH 134
                  
Sbjct: 607 KHKHCCF 613


>gi|89071984|ref|ZP_01158580.1| hypothetical protein SKA34_08118 [Photobacterium sp. SKA34]
 gi|89052085|gb|EAR57536.1| hypothetical protein SKA34_08118 [Photobacterium sp. SKA34]
          Length = 186

 Score = 38.4 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 56/156 (35%), Gaps = 5/156 (3%)

Query: 8   RKIVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R + FD+E      G  S+   IIEIG  EL  +  K  R  Q ++ P   + SP   +L
Sbjct: 5   RIVCFDLEMCCWNDGRTSRTGEIIEIGVAELDLNTGKIVRRAQHYVRPAKDEISPFCTEL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI  E ++      S+  +  +       +  A     D       L +  K P     
Sbjct: 65  TGIKPEVVEKNGKPLSVILKSIEQKFGGRHKIYAAWGHDDRILKKECLAKELKVPFREYL 124

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            + TL   +R   + R    +  +  G+    R   
Sbjct: 125 NLATLFKLQRHVTNKRLGQRAAMEIAGVEWEGRQHS 160


>gi|54310437|ref|YP_131457.1| oligoribonuclease [Photobacterium profundum SS9]
 gi|59798036|sp|Q6LM23|ORN_PHOPR RecName: Full=Oligoribonuclease
 gi|46914878|emb|CAG21655.1| putative oligoribonuclease [Photobacterium profundum SS9]
          Length = 181

 Score = 38.0 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  +IIEI 
Sbjct: 11 VDLEMTGLDPEIHQIIEIA 29


>gi|324509601|gb|ADY44034.1| Oligoribonuclease [Ascaris suum]
          Length = 198

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R I  D E TGLD +   ++EI  +
Sbjct: 24 RLIWIDCEMTGLDVRQHTLVEIACI 48


>gi|300781383|ref|ZP_07091237.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium
          ATCC 33030]
 gi|300533090|gb|EFK54151.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium
          ATCC 33030]
          Length = 233

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLD 36
          R + FD+ETT  + +  RI+    V +  
Sbjct: 16 RMLSFDLETTSANPREARIVTSALVRIDG 44


>gi|21228069|ref|NP_633991.1| hypothetical protein MM_1967 [Methanosarcina mazei Go1]
 gi|20906505|gb|AAM31663.1| hypothetical protein MM_1967 [Methanosarcina mazei Go1]
          Length = 249

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 7/39 (17%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
            FDIETTGL    D+I     V + + ++       ++ 
Sbjct: 89  FFDIETTGLSPCRDKIT---VVGIYNGNEVK----TYVR 120


>gi|307110015|gb|EFN58252.1| hypothetical protein CHLNCDRAFT_12089 [Chlorella variabilis]
          Length = 171

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD ++D+I++I  +
Sbjct: 11 IDLEMTGLDVESDQILQIAVI 31


>gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A]
 gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A]
          Length = 955

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA 31
           I +D ETTGL+ +  +++ I  
Sbjct: 367 IAWDTETTGLNPQTAKLVGISC 388


>gi|254489693|ref|ZP_05102889.1| exonuclease superfamily [Methylophaga thiooxidans DMS010]
 gi|224465102|gb|EEF81355.1| exonuclease superfamily [Methylophaga thiooxydans DMS010]
          Length = 185

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + K+K   I  D+E TGLD+ ND IIEI 
Sbjct: 1  MAKSKNNLIWIDLEMTGLDTNNDYIIEIA 29


>gi|33357113|pdb|1J9A|A Chain A, Oligoribonuclease
          Length = 184

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD + +RIIEI 
Sbjct: 13 IDLEXTGLDPEKERIIEIA 31


>gi|114564478|ref|YP_751992.1| oligoribonuclease [Shewanella frigidimarina NCIMB 400]
 gi|122298754|sp|Q07XW1|ORN_SHEFN RecName: Full=Oligoribonuclease
 gi|114335771|gb|ABI73153.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
          frigidimarina NCIMB 400]
          Length = 181

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+   DR+IEI 
Sbjct: 11 VDLEMTGLEPDVDRVIEIA 29


>gi|94990039|ref|YP_598139.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS10270]
 gi|94543547|gb|ABF33595.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes
           MGAS10270]
          Length = 833

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 32/196 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48
           M +K   +  V D+E TG                 ++II               +++  +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 60

Query: 49  CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
            P+        + L GITD+ L   P F  +    +    +    ++AHN KFD   +  
Sbjct: 61  NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 116

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                 +        +DT+ +A+   P       S   R  + I     H A+ D+   +
Sbjct: 117 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLSHLSRQ-LNIDLAEAHTAIADARATA 174

Query: 169 DVYIKMMVGGSQINFG 184
            ++++++     +   
Sbjct: 175 ILFLRLLQKIESLPIE 190


>gi|50913902|ref|YP_059874.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS10394]
 gi|139474153|ref|YP_001128869.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes str. Manfredo]
 gi|50902976|gb|AAT86691.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes
           MGAS10394]
 gi|134272400|emb|CAM30656.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes str.
           Manfredo]
          Length = 833

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 32/196 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48
           M +K   +  V D+E TG                 ++II               +++  +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 60

Query: 49  CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
            P+        + L GITD+ L   P F  +    +    +    ++AHN KFD   +  
Sbjct: 61  NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 116

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                 +        +DT+ +A+   P       S   R  + I     H A+ D+   +
Sbjct: 117 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLSHLSRQ-LNIDLAEAHTAIADARATA 174

Query: 169 DVYIKMMVGGSQINFG 184
            ++++++     +   
Sbjct: 175 ILFLRLLQKIESLPIE 190


>gi|71910349|ref|YP_281899.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS5005]
 gi|71853131|gb|AAZ51154.1| ATP-dependent helicase [Streptococcus pyogenes MGAS5005]
          Length = 819

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 32/196 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48
           M +K   +  V D+E TG                 ++II               +++  +
Sbjct: 1   MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 46

Query: 49  CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
            P+        + L GITD+ L   P F  +    +    +    ++AHN KFD   +  
Sbjct: 47  NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 102

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                 +        +DT+ +A+   P       S   R  + I     H A+ D+   +
Sbjct: 103 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLSHLSRQ-LNIDLAEAHTAIADARATA 160

Query: 169 DVYIKMMVGGSQINFG 184
            ++++++     +   
Sbjct: 161 ILFLRLLQKIESLPIE 176


>gi|71903180|ref|YP_279983.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS6180]
 gi|71802275|gb|AAX71628.1| ATP-dependent helicase [Streptococcus pyogenes MGAS6180]
          Length = 833

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 32/196 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48
           M +K   +  V D+E TG                 ++II               +++  +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 60

Query: 49  CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
            P+        + L GITD+ L   P F  +    +    +    ++AHN KFD   +  
Sbjct: 61  NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 116

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                 +        +DT+ +A+   P       S   R  + I     H A+ D+   +
Sbjct: 117 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLSHLSRQ-LNIDLAEAHTAIADARATA 174

Query: 169 DVYIKMMVGGSQINFG 184
            ++++++     +   
Sbjct: 175 ILFLRLLQKIESLPIE 190


>gi|15674717|ref|NP_268891.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes M1 GAS]
 gi|13621839|gb|AAK33612.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes M1 GAS]
          Length = 833

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 32/196 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48
           M +K   +  V D+E TG                 ++II               +++  +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 60

Query: 49  CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
            P+        + L GITD+ L   P F  +    +    +    ++AHN KFD   +  
Sbjct: 61  NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 116

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                 +        +DT+ +A+   P       S   R  + I     H A+ D+   +
Sbjct: 117 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLSHLSRQ-LNIDLAEAHTAIADARATA 174

Query: 169 DVYIKMMVGGSQINFG 184
            ++++++     +   
Sbjct: 175 ILFLRLLQKIESLPIE 190


>gi|21909995|ref|NP_664263.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS315]
 gi|28896308|ref|NP_802658.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes SSI-1]
 gi|21904184|gb|AAM79066.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28811559|dbj|BAC64491.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes SSI-1]
          Length = 833

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 32/196 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48
           M +K   +  V D+E TG                 ++II               +++  +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 60

Query: 49  CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
            P+        + L GITD+ L   P F  +    +    +    ++AHN KFD   +  
Sbjct: 61  NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 116

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                 +        +DT+ +A+   P       S   R  + I     H A+ D+   +
Sbjct: 117 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLSHLSRQ-LNIDLAEAHTAIADARATA 174

Query: 169 DVYIKMMVGGSQINFG 184
            ++++++     +   
Sbjct: 175 ILFLRLLQKIESLPIE 190


>gi|325087498|gb|EGC40808.1| oligoribonuclease [Ajellomyces capsulatus H88]
          Length = 189

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 12 FDIETTGLDSKNDRIIEIGA 31
           D E TGL+ + D+I++I  
Sbjct: 13 IDCEMTGLNPRTDKILQICC 32


>gi|152965734|ref|YP_001361518.1| exonuclease RNase T and DNA polymerase III [Kineococcus
          radiotolerans SRS30216]
 gi|151360251|gb|ABS03254.1| Exonuclease RNase T and DNA polymerase III [Kineococcus
          radiotolerans SRS30216]
          Length = 218

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
          + FD ETTGL     +  EI  V       T R  + FL     +  P AL +       
Sbjct: 7  VFFDTETTGLGP-GRQAWEIALVRREPDG-TERPLEFFLPIEEVRAEPGALDIGRYYARH 64

Query: 70 LK 71
            
Sbjct: 65 PH 66


>gi|325956410|ref|YP_004291822.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC]
 gi|325332975|gb|ADZ06883.1| DNA polymerase III alpha chain [Lactobacillus acidophilus 30SC]
 gi|327183226|gb|AEA31673.1| DNA polymerase III subunit alpha [Lactobacillus amylovorus GRL
           1118]
          Length = 177

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 5/160 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHYPESA--CSLALVMVRNTEIVDR-FYTVINPQ-MPFDARNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K+ P+  +          +      AHNA+FD   +   L R N        I   
Sbjct: 57  AEDVKNAPT-MAEVWPKIKGLYQPGMLVAAHNARFDTNVMRQSLARYNISEPHYLVIDTL 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            +  + +     + L+++     + + H     +  ++  
Sbjct: 116 ATSKKFEPELPNHKLDTVSDALDVELWHHHNALSDSEACA 155


>gi|262038648|ref|ZP_06012015.1| exonuclease RNase T and DNA polymerase III [Leptotrichia
           goodfellowii F0264]
 gi|261747318|gb|EEY34790.1| exonuclease RNase T and DNA polymerase III [Leptotrichia
           goodfellowii F0264]
          Length = 195

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 69/185 (37%), Gaps = 19/185 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK------TNRTFQVFLCPNGRKN 55
           ++KN    I FD+ET G       ++ I A+++    +       +   + +    G   
Sbjct: 1   MKKN---IIFFDVETNG--KMGSSVLSISAIKVSYDFEKNSWEKVSEYDRFYFRNEGEPI 55

Query: 56  SPEALKLHGITD------EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           +  A+ ++G+TD          D PS      + +  + +    ++AHN KFD  FI   
Sbjct: 56  NFGAINVNGLTDEVIAEKRENADYPSTFKEDLDSFYLYCQDTKHFVAHNIKFDRSFIPFP 115

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           L+      ++   I+                L    K Y + +     H +L D  +   
Sbjct: 116 LKNQFDTMMENIDIVRAGINEYGS--YKWPKLMECAKFYNVPMDEEQLHESLYDVLITFR 173

Query: 170 VYIKM 174
           V+ KM
Sbjct: 174 VFYKM 178


>gi|239814490|ref|YP_002943400.1| oligoribonuclease [Variovorax paradoxus S110]
 gi|239801067|gb|ACS18134.1| Exonuclease RNase T and DNA polymerase III [Variovorax paradoxus
          S110]
          Length = 198

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +++K+    +  D E +GLD + +R++EI  V
Sbjct: 15 VLKKSDQNLVWLDCEMSGLDPEKERLLEIAVV 46


>gi|198283559|ref|YP_002219880.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218666066|ref|YP_002426185.1| exodeoxyribonuclease X, putative [Acidithiobacillus ferrooxidans
          ATCC 23270]
 gi|198248080|gb|ACH83673.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218518279|gb|ACK78865.1| exodeoxyribonuclease X, putative [Acidithiobacillus ferrooxidans
          ATCC 23270]
          Length = 220

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYS--KTNRTFQVFLCP 50
          MR ++FD ETTG       +IE   + + D    +    F     P
Sbjct: 1  MRALIFDTETTG--RVEPELIEAAWLAVSDLRTLEVEEQFVQRYRP 44


>gi|160893421|ref|ZP_02074206.1| hypothetical protein CLOL250_00970 [Clostridium sp. L2-50]
 gi|156864816|gb|EDO58247.1| hypothetical protein CLOL250_00970 [Clostridium sp. L2-50]
          Length = 319

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 63/233 (27%), Gaps = 25/233 (10%)

Query: 7   MRKIVFDIETTGL---DSKND---------RIIEIGAVELLDYSKTNRTFQVFLCP---- 50
           M  IV D+E                      IIEIGAV++    +    +   + P    
Sbjct: 1   MNYIVMDLE----WNQSYSGHIGEHPRMPFEIIEIGAVKVDKNYRIIDEYSSLIKPRIYK 56

Query: 51  --NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
             + +  +        +       +     +     D+             + ++ F   
Sbjct: 57  KLHSKIRTILNYDETDLAKGRGFKEVCTEFLEWCGKDYIFCTWGPMDLTELQTNMAFYYM 116

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           +        L+  +I   +        S      +          H + + A   + +L 
Sbjct: 117 DKLPRPLKFLNLQQIYANMVDPTGSTVSKLEKAVADFNIPEDEPFHSAVNDARYTALVLK 176

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPN-ISLLKRDKPLFTRITKEE 220
           +++ + +      +F    +  +  +E      N    + R+         +E
Sbjct: 177 EMHPRNLKDL--YSFDLYIHPTKKEEEIVAIHNNQYEYITREFSSKQEAMDDE 227


>gi|159489154|ref|XP_001702562.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280584|gb|EDP06341.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 180

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD + D IIE+  +
Sbjct: 4  VDLEMTGLDIEKDTIIEMACI 24


>gi|119491524|ref|XP_001263283.1| RNA exonuclease Rex2, putative [Neosartorya fischeri NRRL 181]
 gi|119411443|gb|EAW21386.1| RNA exonuclease Rex2, putative [Neosartorya fischeri NRRL 181]
          Length = 188

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 2/57 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGL+ + D I++I                F+  +  +       +       
Sbjct: 13 IDCEMTGLNPETDTILQICCYITDANLNLLDPEGFETIIRHDRSVLDSMSPWCVDTH 69


>gi|153003099|ref|YP_001377424.1| hypothetical protein Anae109_0222 [Anaeromyxobacter sp. Fw109-5]
 gi|152026672|gb|ABS24440.1| conserved hypothetical protein [Anaeromyxobacter sp. Fw109-5]
          Length = 172

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 46/172 (26%), Gaps = 5/172 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLHG 64
           M   V D+E  G       ++ +GAV +       RTF     P  +       A+    
Sbjct: 1   MSLYVVDVEADGPIPGKYSMVSLGAVLVEPG--LGRTFYGRTRPIADAFLPDALAVSATT 58

Query: 65  ITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
             +    D+P    + F  +          + + N  FD  F+N                
Sbjct: 59  REEHLRFDEPGEVMAAFERWIQETTRGKPVFFSDNLAFDWQFVNWYFHTYLGRNPFGWSG 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                +       +      L K            G       + D+ +K+ 
Sbjct: 119 RRIGDLYCGMVKDAYAQWKHLRKTGHDHHPVNDAKGNAEALLAMIDMGLKLT 170


>gi|90578520|ref|ZP_01234331.1| hypothetical protein VAS14_15754 [Vibrio angustum S14]
 gi|90441606|gb|EAS66786.1| hypothetical protein VAS14_15754 [Vibrio angustum S14]
          Length = 186

 Score = 38.0 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 56/156 (35%), Gaps = 5/156 (3%)

Query: 8   RKIVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R + FD+E      G  S+   IIEIG  EL  +  K  R  Q ++ P   + SP   +L
Sbjct: 5   RIVCFDLEMCCWNDGRTSRTGEIIEIGVAELDLNTGKIVRRAQHYVRPAKDEISPFCTEL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI  E ++      S+  +  +       +  A     D       L +  K P     
Sbjct: 65  TGIKPEVVEKNGKPLSVILKSIEQKFGGRHKIYAAWGHDDRILKKECLAKELKVPFREYL 124

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            + TL   +R   + R    +  +  G+    R   
Sbjct: 125 NLATLFKLQRHVTNKRLGQRAAMEIAGVEWEGRQHS 160


>gi|330883457|gb|EGH17606.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 54

 Score = 38.0 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 205 LLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYISS 243
              R      R ++ EL EH+  + T+ K     A+W + + +
Sbjct: 6   PADRKPCRIIRASESELAEHEVRMSTIAKASGAPALWVQMLEA 48


>gi|147900544|ref|NP_001089554.1| exoribonuclease 1 [Xenopus laevis]
 gi|67678439|gb|AAH97876.1| Thex1 protein [Xenopus laevis]
          Length = 348

 Score = 38.0 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 65/190 (34%), Gaps = 18/190 (9%)

Query: 11  VFDIETT-----GLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLH 63
           V D E T      LD     IIE   V L  ++ +    FQ ++ P      S   + L 
Sbjct: 131 VIDFEATCEAGNSLDYP-HEIIEFPIVLLNTHTLEIEDVFQCYVRPEINPQLSEFCVNLT 189

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRIN 114
           GIT + +    +F ++     ++  E+              + +    +       +   
Sbjct: 190 GITQDTVDKSDTFPNVLRSVVEWMREKELGSKYKYAILTDGSWDMSKFLNMQCRISRLKY 249

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                    I        K P ++  L ++ ++ G+T  +   H  L DS  ++ +   M
Sbjct: 250 PRFAKKWINIRKSYGNFYKVPRTQTKLTTMLEKLGMT-YNGRLHSGLDDSKNIARIAAHM 308

Query: 175 MVGGSQINFG 184
           +  G ++   
Sbjct: 309 LQDGCELRVN 318


>gi|84494356|ref|ZP_00993475.1| oligoribonuclease [Janibacter sp. HTCC2649]
 gi|84383849|gb|EAP99729.1| oligoribonuclease [Janibacter sp. HTCC2649]
          Length = 226

 Score = 38.0 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCP 50
          R +  D E TGL  +ND ++E+ A V   + +       V + P
Sbjct: 15 RIVWIDCEMTGLSLENDALVEVAALVTDFELNILGDGVDVVIKP 58


>gi|317495208|ref|ZP_07953578.1| exonuclease [Gemella moribillum M424]
 gi|316914630|gb|EFV36106.1| exonuclease [Gemella moribillum M424]
          Length = 623

 Score = 38.0 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 8/172 (4%)

Query: 1   MIRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M+R+ K +   + DIE T    +   II+  A ++    +   +   ++ P     +   
Sbjct: 1   MVRELKGKYFCIVDIELT----EEKEIIQFAAKKIDFNFRVINSINYYIKPIQSDITSFV 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             L GIT+E L+DKPSF  +    +++  +     +  +       I  +  +       
Sbjct: 57  TDLTGITNEILRDKPSFRKVSKVLYEYIKDG---ILVCHGLQSDYLILKKHFQDIGIEYS 113

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           PS  +DT+ +AR   P+  +   S         S  + H A++D    + + 
Sbjct: 114 PSMSLDTVELARLFLPTQSSYRLSDLAASLNIYSSDNYHNAVIDVKATAKLL 165


>gi|238758483|ref|ZP_04619660.1| Exodeoxyribonuclease 10 [Yersinia aldovae ATCC 35236]
 gi|238703387|gb|EEP95927.1| Exodeoxyribonuclease 10 [Yersinia aldovae ATCC 35236]
          Length = 187

 Score = 38.0 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 71/188 (37%), Gaps = 20/188 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET GL      I+E+ +++++D    N      + P+ R  S +A+ +H IT
Sbjct: 1   MYFRVIDTETCGL---EGGIVEVASIDVVDGVL-NNPMSDLISPD-RPISIDAMVIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++ KP  +    ++       +  ++AHNA FD G +               + I T
Sbjct: 56  EEMVEGKPRIAVAVRKYQ-----GSPYYVAHNAPFDRGVLPE----------MGGQWICT 100

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +AR  +P  ++    L     + +S           +        +        +  +
Sbjct: 101 LKLARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIMKDSGWNAQ 160

Query: 187 TNEDRFFK 194
              +   +
Sbjct: 161 QMAEMTQQ 168


>gi|16331359|ref|NP_442087.1| ribonuclease D [Synechocystis sp. PCC 6803]
 gi|1001530|dbj|BAA10157.1| ribonuclease D [Synechocystis sp. PCC 6803]
          Length = 217

 Score = 38.0 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 8  RKIVFDIETTGLDSKNDR--IIEI 29
          +++  D ET GL+   DR  +++I
Sbjct: 29 KEVAVDTETMGLNPHRDRLCLVQI 52


>gi|330720662|gb|EGG98910.1| 3'-to-5' oligoribonuclease (orn) [gamma proteobacterium IMCC2047]
          Length = 182

 Score = 38.0 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+  +D IIEI 
Sbjct: 10 VDLEMTGLEPDHDTIIEIA 28


>gi|262201950|ref|YP_003273158.1| exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
          DSM 43247]
 gi|262085297|gb|ACY21265.1| Exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
          DSM 43247]
          Length = 194

 Score = 38.0 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37
           D E TGL  ++D++IEI A+     
Sbjct: 3  IDCEMTGLSLESDKLIEIAALVTDGD 28


>gi|312883579|ref|ZP_07743304.1| hypothetical protein VIBC2010_12209 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368802|gb|EFP96329.1| hypothetical protein VIBC2010_12209 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 176

 Score = 38.0 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 20/183 (10%)

Query: 5   NKMRKIVFDIET----------TGLDSKNDRIIEIGAVELL--DYSKTNRTFQVFLCPNG 52
           N  R + FD+E           TG       IIEIG  E+         R  Q ++ P  
Sbjct: 2   NHNRVVCFDLEMCCWNENGIGRTG------EIIEIGLAEIDLTSGEIVKRA-QYYVKPEA 54

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            + S    +L GI+   ++ +                 + +  A     D   +  E  +
Sbjct: 55  DEVSQFCTELTGISPRKIEKQGRSLGEVLNSMKKNFGGSNKIYAS-WGRDDVILQNECAK 113

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              +      I        +     +   + + +          +H   +D++ L+ + +
Sbjct: 114 KGLEMPFREFINLATLFRIQNRLKDKRVGHKVAQEMKGITWEGRQHSGYVDAYNLAKLAL 173

Query: 173 KMM 175
            M+
Sbjct: 174 VML 176


>gi|145595801|ref|YP_001160098.1| hypothetical protein Strop_3286 [Salinispora tropica CNB-440]
 gi|145305138|gb|ABP55720.1| DNA polymerase III, epsilon subunit [Salinispora tropica CNB-440]
          Length = 607

 Score = 38.0 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 61/169 (36%), Gaps = 3/169 (1%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       I EIGAV++    +        + P G    P    L GIT  
Sbjct: 54  FVVVDLETTGGTPDGGGITEIGAVKVRGGEQLG-VLATLVNP-GTPVPPFVTVLTGITQS 111

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P  + +   F +F    +A  +AHNA +DVGF+ A           P  +     
Sbjct: 112 MLLPAPPITEVLPSFLEFL-PPDAVLVAHNAPYDVGFLKAACAAHGYRWPSPRVLDTAAL 170

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             R        +            + R  H AL D+    DV   ++  
Sbjct: 171 ARRVLTRDEVPNRRLGTLAAYFRTATRPTHRALDDALATVDVLHGLISR 219


>gi|18957986|gb|AAL79620.1| DNA polymerase III, epsilon chain-like protein [Xenorhabdus
           nematophila]
          Length = 45

 Score = 38.0 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 3/31 (9%)

Query: 211 PLFTRITKEELDEHDKTIQTLGKN---AIWD 238
                 + EEL +H+  +  + K     +W 
Sbjct: 8   LKVIYASDEELTQHESRLDLVEKKGGSCLWR 38


>gi|311896098|dbj|BAJ28506.1| putative oligoribonuclease [Kitasatospora setae KM-6054]
          Length = 200

 Score = 38.0 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPN 51
          R +  D E TGLD   D +IE+ A V   + +       V + P 
Sbjct: 4  RLVWIDCEMTGLDLDRDALIEVAALVTDSELNVLGEGVDVIIRPP 48


>gi|227872469|ref|ZP_03990809.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227841670|gb|EEJ51960.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 388

 Score = 38.0 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELL 35
           FDIETTGL  K+ +I  IG +   
Sbjct: 28 FFDIETTGLSPKSAQIYSIGLLLFK 52


>gi|83757883|gb|ABC45996.1| exonuclease family [Salinibacter ruber DSM 13855]
          Length = 538

 Score = 38.0 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 4/97 (4%)

Query: 28  EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87
           EIGAV++ D S  +R FQ  + P  +       K+ GIT   + + P    +  ++  F 
Sbjct: 2   EIGAVKVRDGSVVDR-FQQLVNPQ-QSVPGRITKMTGITTGMVFEAPPADEVLPDYRAFL 59

Query: 88  NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            +     +AHN  FD  F++AELQR+  + L    + 
Sbjct: 60  GD--GILVAHNVSFDGSFLDAELQRMGDETLPNETLC 94


>gi|296270642|ref|YP_003653274.1| exonuclease RNase T and DNA polymerase III [Thermobispora bispora
          DSM 43833]
 gi|296093429|gb|ADG89381.1| Exonuclease RNase T and DNA polymerase III [Thermobispora bispora
          DSM 43833]
          Length = 198

 Score = 38.0 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGR 53
           D E TGLD   D ++E+  +      +  +    V + P   
Sbjct: 8  IDCEMTGLDLTRDALVEVACIVTDGELNPVDEGVAVVIKPPPE 50


>gi|194015681|ref|ZP_03054297.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
 gi|194013085|gb|EDW22651.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
          Length = 744

 Score = 38.0 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 16/19 (84%)

Query: 9   KIVFDIETTGLDSKNDRII 27
           +IVFD+ETTG+D  ND I+
Sbjct: 136 EIVFDVETTGVDVWNDYIV 154


>gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ]
 gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ]
          Length = 888

 Score = 38.0 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 11  VFDIETTGLDSKNDRIIEIGA 31
            FD ETTGLD +   ++ I  
Sbjct: 314 AFDTETTGLDPRTAELVGISI 334


>gi|94311778|ref|YP_584988.1| exonuclease [Cupriavidus metallidurans CH34]
 gi|93355630|gb|ABF09719.1| 3'-5' Exonuclease [Cupriavidus metallidurans CH34]
          Length = 194

 Score = 38.0 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 11/101 (10%)

Query: 11  VFDIETT-------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKL 62
           V D+E T       G + +     EIGAV +         FQ F+ P      +     L
Sbjct: 7   VVDLEATCSEDMAAGWEMETA---EIGAVWVRGNGTVLDHFQSFVRPVVNPQLTAFFTNL 63

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
            GI+   + D P F+    +   F            +    
Sbjct: 64  TGISQSDVDDAPLFTVAAEQLRQFVERYQMPGSIWVSWGAW 104


>gi|313836680|gb|EFS74394.1| exonuclease [Propionibacterium acnes HL037PA2]
 gi|314929914|gb|EFS93745.1| exonuclease [Propionibacterium acnes HL044PA1]
 gi|314972342|gb|EFT16439.1| exonuclease [Propionibacterium acnes HL037PA3]
          Length = 202

 Score = 38.0 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD  +D +IE+ A+              V + P  +        +  + 
Sbjct: 5  IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLEHMNDFVRDMH 60


>gi|259486196|tpe|CBF83844.1| TPA: RNA exonuclease Rex2, putative (AFU_orthologue;
          AFUA_3G11820) [Aspergillus nidulans FGSC A4]
          Length = 194

 Score = 38.0 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 12 FDIETTGLDSKNDRIIEIGA 31
           D E TGLD   D I++I  
Sbjct: 13 IDCEMTGLDPTTDHILQICC 32


>gi|291521153|emb|CBK79446.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Coprococcus catus GD/7]
          Length = 320

 Score = 38.0 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 61/216 (28%), Gaps = 20/216 (9%)

Query: 7   MRKIVFDIETTGLDSKND-------------RIIEIGAVELLDYSKTNRTFQVFLCPN-G 52
           M  +V D E                       IIEIGAV+L +  K    F   + P   
Sbjct: 1   MNYVVVDFE-----WNQACYGKGSENRKIPFEIIEIGAVKLDENLKEIDRFSRTIRPKVY 55

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQ 111
           +K       L GIT E L     FS +  +F  +  +        N              
Sbjct: 56  KKLHYITRDLTGITQEELCASDPFSYVLVDFMLWCGKDYIFCTWGNMDLVELQRNMKYYG 115

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            ++                      +          Y         H A+ D+   +DV+
Sbjct: 116 LLDLLKGPVKYYNVQKFFRLLCAHDASAVSLESAVDYFQLPKEAGFHRAVNDAAYTADVF 175

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207
            ++    ++  +     ++   K ++  +   S  K
Sbjct: 176 RRIDQEEAKKLYSIDYYQNPQSKGDEIHLRYDSYYK 211


>gi|319787286|ref|YP_004146761.1| exodeoxyribonuclease I [Pseudoxanthomonas suwonensis 11-1]
 gi|317465798|gb|ADV27530.1| Exodeoxyribonuclease I [Pseudoxanthomonas suwonensis 11-1]
          Length = 480

 Score = 38.0 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           + +D+ET G D +  RI +  AV    +    +    +F+ P      
Sbjct: 5  FLFYDLETFGADPRRSRIAQFAAVRTDRELQVVDEPISLFVRPADDLLP 53


>gi|254455766|ref|ZP_05069195.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082768|gb|EDZ60194.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. HTCC7211]
          Length = 481

 Score = 38.0 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGI 65
          M+ +V+DIET    +    IIEIG + L +  K    F      P  R  S  AL ++  
Sbjct: 1  MKYVVWDIETDSAQTDWATIIEIGGILLDENFKELERFSARCRMPQDRVPSATALCINKS 60

Query: 66 T 66
           
Sbjct: 61 N 61


>gi|159906145|ref|YP_001549807.1| exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C6]
 gi|159887638|gb|ABX02575.1| Exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C6]
          Length = 191

 Score = 38.0 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 3/125 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL      I ++  +      K  + F  +   +    S   +    +   
Sbjct: 2   YVFLDTETTGLHPGQ--IAQLSYLVTDKNLKLKKVFNQYYSVDRMSRSAAKVHGLTMDIL 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                        +     + +++  I HN  FD+ F+ AE +R+  + +   +      
Sbjct: 60  DELSNGMTFEDTVDEVRD-DLEDSVIIGHNISFDIRFLKAEFERLGPEYIPKDKFCTMFH 118

Query: 129 IARRK 133
                
Sbjct: 119 FTPIC 123


>gi|317124466|ref|YP_004098578.1| exonuclease RNase T and DNA polymerase III [Intrasporangium
          calvum DSM 43043]
 gi|315588554|gb|ADU47851.1| Exonuclease RNase T and DNA polymerase III [Intrasporangium
          calvum DSM 43043]
          Length = 211

 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--NRTFQVFLCPNGRKNSPEALKLHGI 65
          R I  D E TGL  + D ++E+ A+ + D+  T       V + P           +  +
Sbjct: 16 RIIWIDCEMTGLSLRTDALVEVAAL-VTDFELTVLGEGVDVVIRPPAAALDQMDEFVRDM 74

Query: 66 T 66
           
Sbjct: 75 H 75


>gi|224368019|ref|YP_002602182.1| hypothetical protein HRM2_09050 [Desulfobacterium autotrophicum
           HRM2]
 gi|223690735|gb|ACN14018.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 277

 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 12/88 (13%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           ++ M  +  DIETTGL+   + I  I    L D      T + ++        PE +  +
Sbjct: 83  RHSM--VYLDIETTGLEPSYESITTIA---LYDGI----TIRYYVKGENLDRFPEEISQY 133

Query: 64  G---ITDEFLKDKPSFSSIFSEFWDFFN 88
                 +    D P     F    D  +
Sbjct: 134 KAIVTYNGKCFDVPFIEHEFGIRLDQVH 161


>gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
 gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
          Length = 956

 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 10  IVFDIETTGLDSKNDRIIEIG 30
           + FD ETTGL+     ++ I 
Sbjct: 386 VCFDTETTGLNPLTAELVGIA 406


>gi|311697102|gb|ADP99974.1| YacC protein [marine bacterium HP15]
          Length = 286

 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 60/185 (32%), Gaps = 13/185 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D ETTGLD    +IIE+   +           +  L P      PEA  +HG+T EFL
Sbjct: 110 FLDTETTGLD-DQAQIIELAISDAQGTIL----LETKLRP-SVSIDPEAEDVHGLTIEFL 163

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SRIIDTL 127
            + P++  +  +            +  NA FD            +               
Sbjct: 164 ANAPTWPEVSDQVRKILCG--RALVIFNADFDTRMFRQTAAAYGEPVEWVSELKTHCAMY 221

Query: 128 SIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             A    P++R+   SL             + HGA+ D+    D+   +      +    
Sbjct: 222 LAADAFGPTNRHGSISLADAVDFAGVTWRGAAHGAVADTLATVDLVQAIGSIRRDLETEL 281

Query: 186 KTNED 190
              E+
Sbjct: 282 AALEE 286


>gi|308174838|ref|YP_003921543.1| exoribonuclease (3'-5') [Bacillus amyloliquefaciens DSM 7]
 gi|307607702|emb|CBI44073.1| putative exoribonuclease (3'-5') [Bacillus amyloliquefaciens DSM 7]
          Length = 232

 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 3/148 (2%)

Query: 25  RIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            IIE G V+ +D  +   TF  ++ P   RK +        IT E +    +F+    + 
Sbjct: 55  EIIEAGIVKTVDD-EVAETFSSYIKPKKFRKLTKRCKTFLNITQEDVDGGITFNEFIRKL 113

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNS 143
            +   ++N   +              +      P        +L         +   L  
Sbjct: 114 NELDPDKNCTIVTWGNMDMKVLKQNCMFNHIPFPFKGELRDLSLEYKNFFGDRTLTGLWK 173

Query: 144 LCKRYGITISHRSKHGALLDSHLLSDVY 171
             + YG      + H AL D+     ++
Sbjct: 174 AAEEYGDK-GTGTHHKALDDAMTTHKLF 200


>gi|85711864|ref|ZP_01042919.1| oligoribonuclease [Idiomarina baltica OS145]
 gi|85694261|gb|EAQ32204.1| oligoribonuclease [Idiomarina baltica OS145]
          Length = 183

 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 3  RKNKMRKIVFDIETTGLDSKNDRIIEIG 30
           +   R I  D+E TGL+ + D +IE+ 
Sbjct: 4  EQKSQRLIWIDLEMTGLNPEYDHVIEVA 31


>gi|256375198|ref|YP_003098858.1| oligoribonuclease [Actinosynnema mirum DSM 43827]
 gi|255919501|gb|ACU35012.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum
          DSM 43827]
          Length = 208

 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D E TGLD  +D +IEI A+
Sbjct: 3  RLVWIDCEMTGLDLGSDALIEIAAL 27


>gi|134094115|ref|YP_001099190.1| oligoribonuclease [Herminiimonas arsenicoxydans]
 gi|133738018|emb|CAL61063.1| oligoribonuclease [Herminiimonas arsenicoxydans]
          Length = 198

 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD  ND IIEI  V
Sbjct: 28 LDMEMTGLDCDNDCIIEIAVV 48


>gi|288956945|ref|YP_003447286.1| ribonuclease D [Azospirillum sp. B510]
 gi|288909253|dbj|BAI70742.1| ribonuclease D [Azospirillum sp. B510]
          Length = 208

 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 6/36 (16%)

Query: 10 IVFDIETTGLDSKNDR--IIEI----GAVELLDYSK 39
          +  D ET GL+   DR  ++++    GAV L+ +  
Sbjct: 25 VAIDTETMGLNPHRDRLCLVQLSAGDGAVHLVQFRP 60


>gi|262401567|ref|ZP_06078134.1| oligoribonuclease [Vibrio sp. RC586]
 gi|262352282|gb|EEZ01411.1| oligoribonuclease [Vibrio sp. RC586]
          Length = 181

 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  +IIE+ 
Sbjct: 11 IDLEMTGLDPETHKIIEMA 29


>gi|156551267|ref|XP_001600928.1| PREDICTED: similar to ENSANGP00000010833 [Nasonia vitripennis]
          Length = 224

 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 10/148 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQ-VFLCP--------NGRKNSPEALK 61
            D+E +GLD   +RI+EI   +   + +  +  FQ V   P        +  +N+     
Sbjct: 49  IDMEMSGLDVDKNRILEIACLITDENLNVISDEFQAVLYQPDTELDTMNDWCQNNHGKTG 108

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L     +  + + +       F   +  +    +A N+ +       +   ++ D +   
Sbjct: 109 LIDACKKSAETEDAVDINLLYFMMKYIPKGKCPLAGNSVYVDRLFLRKYMPVSNDYIHYR 168

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYG 149
            I  +      K        N   K + 
Sbjct: 169 IIDVSSIKEVVKRWKPEMYSNIPKKEFN 196


>gi|315226274|ref|ZP_07868062.1| oligoribonuclease [Parascardovia denticolens DSM 10105]
 gi|315120406|gb|EFT83538.1| oligoribonuclease [Parascardovia denticolens DSM 10105]
          Length = 254

 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/214 (11%), Positives = 59/214 (27%), Gaps = 7/214 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D E TGLD ++D + E+  V    +    ++   + + P+    +     +  +     
Sbjct: 38  IDCEMTGLDIEHDELCEVSVVPTDFNLKVLDQGIDLVIKPSQAAVNHMGDFVRRMHASSG 97

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             K     +     +       +            +       +K  LD         + 
Sbjct: 98  LIKEWEQGLSLAEAEARVIDYVKPFLPEDGQGKAHLAGNTIGSDKKFLDRFMPDLMGLLH 157

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-----MVGGSQINFGF 185
            R    S     S      +      KHG       + +   ++      +   +     
Sbjct: 158 YRTIDVSTLKELSRRWYPDVYSQRPVKHGGHRALADIIESIDELRYYRSAMFLPEPGLDA 217

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
              +    + E+ ++   +  +   PL  + + E
Sbjct: 218 DQAQAACRQVEETSLLR-AYEQAGDPLTDQASAE 250


>gi|294786667|ref|ZP_06751921.1| oligoribonuclease [Parascardovia denticolens F0305]
 gi|294485500|gb|EFG33134.1| oligoribonuclease [Parascardovia denticolens F0305]
          Length = 242

 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/214 (11%), Positives = 59/214 (27%), Gaps = 7/214 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D E TGLD ++D + E+  V    +    ++   + + P+    +     +  +     
Sbjct: 26  IDCEMTGLDIEHDELCEVSVVPTDFNLKVLDQGIDLVIKPSQAAVNHMGDFVRRMHASSG 85

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             K     +     +       +            +       +K  LD         + 
Sbjct: 86  LIKEWEQGLSLAEAEARVIDYVKPFLPEDGQGKAHLAGNTIGSDKKFLDRFMPDLMGLLH 145

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-----MVGGSQINFGF 185
            R    S     S      +      KHG       + +   ++      +   +     
Sbjct: 146 YRTIDVSTLKELSRRWYPDVYSQRPVKHGGHRALADIIESIDELRYYRSAMFLPEPGLDA 205

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
              +    + E+ ++   +  +   PL  + + E
Sbjct: 206 DQAQAACRQVEETSLLR-AYEQAGDPLTDQASAE 238


>gi|229512381|ref|ZP_04401856.1| oligoribonuclease [Vibrio cholerae TMA 21]
 gi|229526905|ref|ZP_04416308.1| oligoribonuclease [Vibrio cholerae bv. albensis VL426]
 gi|229526997|ref|ZP_04416393.1| oligoribonuclease [Vibrio cholerae 12129(1)]
 gi|262172561|ref|ZP_06040239.1| oligoribonuclease [Vibrio mimicus MB-451]
 gi|229335520|gb|EEO01001.1| oligoribonuclease [Vibrio cholerae 12129(1)]
 gi|229336074|gb|EEO01093.1| oligoribonuclease [Vibrio cholerae bv. albensis VL426]
 gi|229350596|gb|EEO15541.1| oligoribonuclease [Vibrio cholerae TMA 21]
 gi|261893637|gb|EEY39623.1| oligoribonuclease [Vibrio mimicus MB-451]
          Length = 181

 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  +IIE+ 
Sbjct: 11 IDLEMTGLDPETHKIIEMA 29


>gi|71020669|ref|XP_760565.1| hypothetical protein UM04418.1 [Ustilago maydis 521]
 gi|46100453|gb|EAK85686.1| hypothetical protein UM04418.1 [Ustilago maydis 521]
          Length = 606

 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 12  FDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFL 48
            D E TGL  +  DR++EI  +          +   ++
Sbjct: 426 IDCEMTGLSVENGDRLLEIACIITDGQLNPIDSGVSYV 463


>gi|291613511|ref|YP_003523668.1| Exonuclease RNase T and DNA polymerase III [Sideroxydans
          lithotrophicus ES-1]
 gi|291583623|gb|ADE11281.1| Exonuclease RNase T and DNA polymerase III [Sideroxydans
          lithotrophicus ES-1]
          Length = 181

 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          + +N+   +  D+E TGL    DRIIE+  V
Sbjct: 1  MAQNQNNLVWIDMEMTGLLPDTDRIIEVALV 31


>gi|254498741|ref|ZP_05111457.1| oligoribonuclease [Legionella drancourtii LLAP12]
 gi|254352069|gb|EET10888.1| oligoribonuclease [Legionella drancourtii LLAP12]
          Length = 173

 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 15 ETTGLDSKNDRIIEIGAV 32
          E TGLD + +RIIEI  V
Sbjct: 2  EMTGLDPEENRIIEIATV 19


>gi|116515288|ref|YP_802917.1| oligoribonuclease [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116257142|gb|ABJ90824.1| oligoribonuclease [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 181

 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 12 FDIETTGLDSKNDRIIEI 29
           D+ETTGL+ K  +IIEI
Sbjct: 11 VDLETTGLNPKIHKIIEI 28


>gi|229523521|ref|ZP_04412926.1| hypothetical protein VCA_001085 [Vibrio cholerae bv. albensis
           VL426]
 gi|229337102|gb|EEO02119.1| hypothetical protein VCA_001085 [Vibrio cholerae bv. albensis
           VL426]
          Length = 176

 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 66/180 (36%), Gaps = 20/180 (11%)

Query: 8   RKIVFDIE----------TTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVFLCPNGRKN 55
           R + FD+E          TTG       IIEIG  E+         R  Q F+ P   + 
Sbjct: 5   RVVCFDLEMCCWNENGVGTTG------EIIEIGLAEIDLAAGEIVKRA-QYFVKPEKDEI 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           S    +L GIT   ++ +    +   +        + +  A   + D+  +N   ++   
Sbjct: 58  SLFCAELTGITPRKIEKQGRPLAEVIQSMVKNFGGSNKIYASWGRDDLILLNECQEKGLS 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P      + TL   + +    R    +  +  GI    R  H   +D++ L+ + + M+
Sbjct: 118 VPFQEFLNLATLYRIQHRLKDKRIGHRAAQESQGIEWEGRQ-HSGYIDAYNLAKLALTML 176


>gi|254514041|ref|ZP_05126102.1| exonuclease, RNase T and DNA polymerase III [gamma
          proteobacterium NOR5-3]
 gi|219676284|gb|EED32649.1| exonuclease, RNase T and DNA polymerase III [gamma
          proteobacterium NOR5-3]
          Length = 183

 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLC 49
          M  ++ D E +GLD     ++ +G V +              + 
Sbjct: 1  MSFLICDAEMSGLDPAKAELLSMGWVRVEGLEIVMGSAEHRLIR 44


>gi|225556491|gb|EEH04779.1| oligoribonuclease [Ajellomyces capsulatus G186AR]
          Length = 189

 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 12 FDIETTGLDSKNDRIIEIGA 31
           D E TGL+ + D+I++I  
Sbjct: 13 IDCEMTGLNPRTDKILQICC 32


>gi|153217654|ref|ZP_01951335.1| oligoribonuclease [Vibrio cholerae 1587]
 gi|229519881|ref|ZP_04409314.1| oligoribonuclease [Vibrio cholerae TM 11079-80]
 gi|297582247|ref|ZP_06944163.1| oligoribonuclease [Vibrio cholerae RC385]
 gi|124113399|gb|EAY32219.1| oligoribonuclease [Vibrio cholerae 1587]
 gi|229343122|gb|EEO08107.1| oligoribonuclease [Vibrio cholerae TM 11079-80]
 gi|297533548|gb|EFH72393.1| oligoribonuclease [Vibrio cholerae RC385]
          Length = 181

 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  +IIE+ 
Sbjct: 11 IDLEMTGLDPETHKIIEMA 29


>gi|108759901|ref|YP_629872.1| putative DNA polymerase II [Myxococcus xanthus DK 1622]
 gi|108463781|gb|ABF88966.1| putative DNA polymerase II [Myxococcus xanthus DK 1622]
          Length = 804

 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 12  FDIETTGLDSKNDRI 26
           FD+ETTGLD  + R+
Sbjct: 157 FDLETTGLDPAHHRV 171


>gi|254519816|ref|ZP_05131872.1| exonuclease [Clostridium sp. 7_2_43FAA]
 gi|226913565|gb|EEH98766.1| exonuclease [Clostridium sp. 7_2_43FAA]
          Length = 209

 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 8/142 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQVFLCPNGRKNSPEALKL 62
           M+ + FD ETT +   N  I ++  + +           + F   +  +      EA+  
Sbjct: 1   MKLLFFDTETTSIKPGN--ICQLSYIVIDASVKPQKTIGKNFFFTV--DSMDEGAEAIHG 56

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +   +   +          +          I HN +FD+ F+  ELQ++ +  L  + 
Sbjct: 57  FSLEKLYDLSEGKEFLDCVHEFMPDFFDADFIIGHNVQFDIKFLKHELQQLWEAGLIDTT 116

Query: 123 IIDTLSIARRKHPSSRNDLNSL 144
                +     +  S  +L S 
Sbjct: 117 WEPKNTFCTMAYYKSPCNLPSP 138


>gi|254281582|ref|ZP_04956550.1| oligoribonuclease [gamma proteobacterium NOR51-B]
 gi|219677785|gb|EED34134.1| oligoribonuclease [gamma proteobacterium NOR51-B]
          Length = 180

 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL  +  R+IEI 
Sbjct: 10 VDLEMTGLVPEEHRVIEIA 28


>gi|158296273|ref|XP_557337.3| AGAP006662-PA [Anopheles gambiae str. PEST]
 gi|157016432|gb|EAL40132.3| AGAP006662-PA [Anopheles gambiae str. PEST]
          Length = 339

 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 3/27 (11%)

Query: 9  KIVFDIETTGLDSKND---RIIEIGAV 32
           + FD+ETTGL        +I E+  V
Sbjct: 7  FVFFDLETTGLPEYEHFRTKITELSMV 33


>gi|118619032|ref|YP_907364.1| oligoribonuclease [Mycobacterium ulcerans Agy99]
 gi|166216272|sp|A0PU74|ORN_MYCUA RecName: Full=Oligoribonuclease
 gi|118571142|gb|ABL05893.1| oligoribonuclease Orn [Mycobacterium ulcerans Agy99]
          Length = 215

 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 7  MRK--IVFDIETTGLDSKNDRIIEIGAV 32
          MR+  +  D E TGLD   D++IEI A+
Sbjct: 1  MREELVWIDCEMTGLDLGPDKLIEIAAL 28


>gi|15641389|ref|NP_231021.1| hypothetical protein VC1377 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121588011|ref|ZP_01677763.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121728525|ref|ZP_01681548.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147675170|ref|YP_001216938.1| hypothetical protein VC0395_A0992 [Vibrio cholerae O395]
 gi|153212725|ref|ZP_01948382.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153817774|ref|ZP_01970441.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153821312|ref|ZP_01973979.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|153825269|ref|ZP_01977936.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|153828771|ref|ZP_01981438.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|183179375|ref|ZP_02957586.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|227081548|ref|YP_002810099.1| hypothetical protein VCM66_1332 [Vibrio cholerae M66-2]
 gi|229505042|ref|ZP_04394552.1| hypothetical protein VCF_000248 [Vibrio cholerae BX 330286]
 gi|229511288|ref|ZP_04400767.1| hypothetical protein VCE_002695 [Vibrio cholerae B33]
 gi|229515749|ref|ZP_04405208.1| hypothetical protein VCB_003407 [Vibrio cholerae TMA 21]
 gi|229518406|ref|ZP_04407850.1| hypothetical protein VCC_002430 [Vibrio cholerae RC9]
 gi|229521489|ref|ZP_04410908.1| hypothetical protein VIF_002026 [Vibrio cholerae TM 11079-80]
 gi|229529547|ref|ZP_04418937.1| hypothetical protein VCG_002642 [Vibrio cholerae 12129(1)]
 gi|229608046|ref|YP_002878694.1| hypothetical protein VCD_002964 [Vibrio cholerae MJ-1236]
 gi|254225334|ref|ZP_04918946.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|254286171|ref|ZP_04961131.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|254848499|ref|ZP_05237849.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297578962|ref|ZP_06940890.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|298498539|ref|ZP_07008346.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9655872|gb|AAF94535.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547752|gb|EAX57843.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121629189|gb|EAX61629.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|124116375|gb|EAY35195.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|125622175|gb|EAZ50497.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|126511712|gb|EAZ74306.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126521130|gb|EAZ78353.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|146317053|gb|ABQ21592.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|148875724|gb|EDL73859.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|149741097|gb|EDM55156.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|150423840|gb|EDN15781.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|183012786|gb|EDT88086.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|227009436|gb|ACP05648.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227013292|gb|ACP09502.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229333321|gb|EEN98807.1| hypothetical protein VCG_002642 [Vibrio cholerae 12129(1)]
 gi|229341587|gb|EEO06590.1| hypothetical protein VIF_002026 [Vibrio cholerae TM 11079-80]
 gi|229345121|gb|EEO10095.1| hypothetical protein VCC_002430 [Vibrio cholerae RC9]
 gi|229347518|gb|EEO12478.1| hypothetical protein VCB_003407 [Vibrio cholerae TMA 21]
 gi|229351253|gb|EEO16194.1| hypothetical protein VCE_002695 [Vibrio cholerae B33]
 gi|229357265|gb|EEO22182.1| hypothetical protein VCF_000248 [Vibrio cholerae BX 330286]
 gi|229370701|gb|ACQ61124.1| hypothetical protein VCD_002964 [Vibrio cholerae MJ-1236]
 gi|254844204|gb|EET22618.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297536556|gb|EFH75389.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297542872|gb|EFH78922.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|327484047|gb|AEA78454.1| hypothetical protein VCLMA_A1213 [Vibrio cholerae LMA3894-4]
          Length = 176

 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 66/180 (36%), Gaps = 20/180 (11%)

Query: 8   RKIVFDIE----------TTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVFLCPNGRKN 55
           R + FD+E          TTG       IIEIG  E+         R  Q F+ P   + 
Sbjct: 5   RVVCFDLEMCCWNENGVGTTG------EIIEIGLAEIDLAAGEIVKRA-QYFVKPEKDEI 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           S    +L GIT   ++ +    +   +        + +  A   + D+  +N   ++   
Sbjct: 58  SLFCAELTGITPRKIEKQGRPLAEVIQSMVKNFGGSNKIYASWGRDDLILLNECREKGLS 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P      + TL   + +    R    +  +  GI    R  H   +D++ L+ + + M+
Sbjct: 118 VPFQEFLNLATLYRIQHRLKDKRIGHRAAQESQGIEWEGRQ-HSGYVDAYNLAKLALTML 176


>gi|258624475|ref|ZP_05719421.1| oligoribonuclease [Vibrio mimicus VM603]
 gi|258583224|gb|EEW08027.1| oligoribonuclease [Vibrio mimicus VM603]
          Length = 181

 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  +IIE+ 
Sbjct: 11 IDLEMTGLDPETHKIIEMA 29


>gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237]
 gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237]
          Length = 945

 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 10  IVFDIETTGLDSKNDRIIEIG 30
           + FD ETTGL+     ++ I 
Sbjct: 374 VCFDTETTGLNPLTAELVGIA 394


>gi|227548036|ref|ZP_03978085.1| DNA polymerase III subunit epsilon [Corynebacterium
          lipophiloflavum DSM 44291]
 gi|227079890|gb|EEI17853.1| DNA polymerase III subunit epsilon [Corynebacterium
          lipophiloflavum DSM 44291]
          Length = 223

 Score = 37.6 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          R + FD+ETT  +    RI+    V +   S T
Sbjct: 8  RMLSFDLETTSANPGEARIVTSALVRIDGSSVT 40


>gi|148244632|ref|YP_001219326.1| ribonuclease T [Candidatus Vesicomyosocius okutanii HA]
 gi|146326459|dbj|BAF61602.1| ribonuclease T [Candidatus Vesicomyosocius okutanii HA]
          Length = 193

 Score = 37.6 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 17/189 (8%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NG 52
           M+ K+++R    +V DIET G + K D ++EI  + +    ++     +     + P  G
Sbjct: 1   MLIKDRIRGYLPVVIDIETGGFNEKTDAMLEICTIIIGIDKMNNLYPKKPQHFHIEPFKG 60

Query: 53  RKNSPEALKLHGITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
               P A+K + I  +                 +         +   A  + HNA FD+G
Sbjct: 61  SILEPSAIKFNSIDVDNPFRMAVKEVDAIKQIYTKVYTELKQKDCTRAILVGHNAFFDLG 120

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           F+ A   R                              ++ K   I       H AL D+
Sbjct: 121 FLRAATNRCKLKSPFHQFSTLDTVSLSALCYGETVLAKAIRK-ADIEWDDTCAHSALYDT 179

Query: 165 HLLSDVYIK 173
              ++++ K
Sbjct: 180 QKTAELFCK 188


>gi|328850543|gb|EGF99706.1| hypothetical protein MELLADRAFT_94133 [Melampsora larici-populina
          98AG31]
          Length = 194

 Score = 37.6 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D E TGLD   ++IIEI  +
Sbjct: 7  RLVWIDCEMTGLDLSKEQIIEIACI 31


>gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002]
 gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002]
          Length = 973

 Score = 37.6 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA 31
           + +D ETTGLD +   ++ IG 
Sbjct: 382 VAWDTETTGLDPREVDLVGIGC 403


>gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1]
          Length = 962

 Score = 37.6 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 9   KIVFDIETTGLDSKNDRII 27
           +I FD ETTGLD     ++
Sbjct: 388 EISFDTETTGLDPNEAELV 406


>gi|300859054|ref|YP_003784037.1| hypothetical protein cpfrc_01637 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|300686508|gb|ADK29430.1| hypothetical protein cpfrc_01637 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|302206756|gb|ADL11098.1| Oligoribonuclease [Corynebacterium pseudotuberculosis C231]
 gi|302331309|gb|ADL21503.1| Oligoribonuclease [Corynebacterium pseudotuberculosis 1002]
 gi|308277000|gb|ADO26899.1| Oligoribonuclease [Corynebacterium pseudotuberculosis I19]
          Length = 219

 Score = 37.6 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD+    I+E+ A+
Sbjct: 20 RLVWIDLEMTGLDTHRHVIVEVAAL 44


>gi|153831492|ref|ZP_01984159.1| oligoribonuclease [Vibrio cholerae 623-39]
 gi|148873026|gb|EDL71161.1| oligoribonuclease [Vibrio cholerae 623-39]
          Length = 181

 Score = 37.6 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  +IIE+ 
Sbjct: 11 IDLEMTGLDPETHKIIEMA 29


>gi|88812805|ref|ZP_01128050.1| oligoribonuclease [Nitrococcus mobilis Nb-231]
 gi|88789875|gb|EAR20997.1| oligoribonuclease [Nitrococcus mobilis Nb-231]
          Length = 185

 Score = 37.6 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD+  D IIEI 
Sbjct: 11 IDLEMTGLDTDRDCIIEIA 29


>gi|312887481|ref|ZP_07747079.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter
           paludis DSM 18603]
 gi|311300023|gb|EFQ77094.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter
           paludis DSM 18603]
          Length = 232

 Score = 37.6 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 66/209 (31%), Gaps = 16/209 (7%)

Query: 9   KIVFDIETTGL----------DSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP 57
            +  D ET+GL          D+     +++  +       +  R    ++  +    +P
Sbjct: 5   FLFIDTETSGLPKDWSQPYSNDANWPYALQVSWIIYTRAGEEIKRNNH-YIRDDDFTINP 63

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINAELQRI 113
           EA  +HGI+ EFL     +     +       Q    +  +         G     +   
Sbjct: 64  EAYNIHGISREFLNLHGEWRKDVMQLLYQDMLQYKPMVVGHYVELDYNIAGVDFYRIGMD 123

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           N     P       S    ++P                 +  ++H A++D+   ++ + +
Sbjct: 124 NPMDTLPRYCTMLGSKGYGRNPRVEYLRLGQLYSALFNRTLYNQHNAIIDAEATAECFFE 183

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPN 202
           MM  G   +   +       K++   + N
Sbjct: 184 MMRDGVVTDASIQRQALEREKKKPYVLKN 212


>gi|325957458|ref|YP_004292870.1| DNA polymerase iii polc-type [Lactobacillus acidophilus 30SC]
 gi|325334023|gb|ADZ07931.1| DNA polymerase iii polc-type [Lactobacillus acidophilus 30SC]
          Length = 272

 Score = 37.6 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 14 IETTGLDSKNDRIIEIGA 31
          IETT L+   D+IIEI A
Sbjct: 22 IETTDLNPTRDQIIEIAA 39


>gi|296129190|ref|YP_003636440.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas
          flavigena DSM 20109]
 gi|296021005|gb|ADG74241.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas
          flavigena DSM 20109]
          Length = 229

 Score = 37.6 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D E TGLD  +D ++E+ AV
Sbjct: 25 RIVWVDCEMTGLDLVHDALVEVAAV 49


>gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo]
 gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis]
          Length = 1613

 Score = 37.6 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 2/20 (10%)

Query: 12   FDIETTGLDSKNDRI--IEI 29
             DIETTGL+ + DRI  ++I
Sbjct: 1061 LDIETTGLNHREDRIRLLQI 1080


>gi|160898849|ref|YP_001564431.1| endodeoxyribonuclease [Delftia acidovorans SPH-1]
 gi|160364433|gb|ABX36046.1| endodeoxyribonuclease [Delftia acidovorans SPH-1]
          Length = 188

 Score = 37.6 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLC 49
           D ET GL      ++ IGAV    +++T   TF   + 
Sbjct: 9  IDTETMGLPPAG-ALLSIGAVFFDLHTQTLGPTFNRTIN 46


>gi|320534579|ref|ZP_08035028.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133200|gb|EFW25699.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 213

 Score = 37.6 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51
           D E TGLD   D +IE+  +    +         V + P 
Sbjct: 20 IDCEMTGLDQSADALIEVAVIVTDYELKPLADGIDVLIKPP 60


>gi|123442599|ref|YP_001006576.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089560|emb|CAL12409.1| exodeoxyribonuclease [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 221

 Score = 37.6 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 17/169 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETT        ++EI +V+++D          F+ P     S EA+ +H IT+  +
Sbjct: 5   VIDTETTSF---EGSVLEIASVDIVDGKIC-NPMSDFVKPTEA-ISFEAMAIHHITENMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P    +  ++ D        ++AHNA FD   +               ++       
Sbjct: 60  ADAPLIEHVIDKYLD-----ADIYVAHNAAFDREKLPQITAPWVCTLKLSRKLWPEGGHG 114

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +    +      + +           H AL D ++ +++ + M     
Sbjct: 115 NQYLRYAHGLNPDVPEGLHA-------HRALYDCYVTAELLLHMNRIAR 156


>gi|198438327|ref|XP_002132043.1| PREDICTED: similar to small fragment nuclease [Ciona intestinalis]
          Length = 205

 Score = 37.6 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 45/172 (26%), Gaps = 7/172 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +N+M  +  D+E TGLD   D I+E+  +            +  +       S E L   
Sbjct: 31  RNRMVWV--DLEMTGLDVNKDHILEMACLVTDGNLNVIAQEEDLV----IHQSDEVLNNM 84

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH-NAKFDVGFINAELQRINKDPLDPSR 122
                    +   +    +      +     +                  I+ D      
Sbjct: 85  NEWCIEQHGRSGLTESVRKSMITLTQAEDIMLKFIQKHAPYKVCPLAGNTIHADKRFLDH 144

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +              + +  L KR+   +    K  +      + +   ++
Sbjct: 145 YMPRFMDHLHYRIVDVSSIKELSKRWYPNVLPPPKGSSHRALEDILESIAEL 196


>gi|169628623|ref|YP_001702272.1| oligoribonuclease [Mycobacterium abscessus ATCC 19977]
 gi|169240590|emb|CAM61618.1| Probable oligoribonuclease [Mycobacterium abscessus]
          Length = 208

 Score = 37.6 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37
           D E TGLD  +D++IEI A+     
Sbjct: 11 IDCEMTGLDLGSDKLIEIAALVTDGD 36


>gi|291231281|ref|XP_002735595.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 217

 Score = 37.6 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 12/100 (12%)

Query: 9   KIVFDIETTGLDSK----------NDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKN-S 56
            + FD+E T +D K             II+IGAV L   +   +  FQ +  P       
Sbjct: 7   YLCFDLEATCVDPKCPANQVTEGFQPEIIDIGAVILDSNTLEEKGEFQSYCRPVKHPTLQ 66

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
           P  L+L  I+ E +     F  ++  F D+   +  +  A
Sbjct: 67  PFCLELTKISQETVDAADEFPDVWGRFIDWMKSKGLKPGA 106


>gi|269468419|gb|EEZ80084.1| exonuclease I [uncultured SUP05 cluster bacterium]
          Length = 471

 Score = 37.6 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 30/126 (23%), Gaps = 6/126 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D ET G+  K DRI +   +   +          +  P                      
Sbjct: 8   DYETFGISPKTDRISQFAGIRTDENLNILDEHMFYCKPTHDCLPAP-----EACAVTGIS 62

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                       +F  + N+E+   N     G+ +                ID  +   +
Sbjct: 63  PQDCEQKGVIEHEFIKKINSEFTTPNTCIV-GYNSIRFDDEFTRYTLYRNFIDPYAWHWK 121

Query: 133 KHPSSR 138
              +  
Sbjct: 122 DGNTRW 127


>gi|258620689|ref|ZP_05715724.1| oligoribonuclease [Vibrio mimicus VM573]
 gi|258586887|gb|EEW11601.1| oligoribonuclease [Vibrio mimicus VM573]
          Length = 181

 Score = 37.6 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  +IIE+ 
Sbjct: 11 IDLEMTGLDPETHKIIEMA 29


>gi|256075149|ref|XP_002573883.1| hunchback protein [Schistosoma mansoni]
 gi|238659073|emb|CAZ30116.1| hunchback protein, putative [Schistosoma mansoni]
          Length = 485

 Score = 37.6 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 5/169 (2%), Positives = 35/169 (20%), Gaps = 4/169 (2%)

Query: 42  RTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
           + F   + P              +      D  + +          + +  + +  +   
Sbjct: 148 KDFHSDVPPENFSGKTIRSIRSKLQRCKQCDFVTDTKDEFWRHLRIHIKEDKRLECHLC- 206

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
                  E +   +  +            +  +      + +   +    +         
Sbjct: 207 ---CFITEYKHHLEYHMRNHMGSKPYKCPKCNYECVNKSMLNSHMKSHSNVYPYRCANCH 263

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
             +     + + +     +      ++      +    + N+      +
Sbjct: 264 YATKYCHSLKLHLTKHEHKPAVVLNSDGSLPPYDNTVELMNVKRGPNIR 312


>gi|154687258|ref|YP_001422419.1| sporulation inhibitor KapD [Bacillus amyloliquefaciens FZB42]
 gi|154353109|gb|ABS75188.1| KapD [Bacillus amyloliquefaciens FZB42]
          Length = 205

 Score = 37.6 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 45/148 (30%), Gaps = 3/148 (2%)

Query: 25  RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSEF 83
            IIE G V+ ++   T  TF  ++ P      +        IT + +    +F+    + 
Sbjct: 28  EIIEAGIVKTVNDEVT-ETFSSYIKPKKFPKLTKRCKTFLNITQKDVDGGITFNEFIRKL 86

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNS 143
            +   ++N   +              +      P        +L         +   L  
Sbjct: 87  NELDPDKNCTIVTWGNMDMKVLKQNCMFNHIPFPFKGELRDLSLEYKNFFGDRTLTGLWK 146

Query: 144 LCKRYGITISHRSKHGALLDSHLLSDVY 171
             + YG      + H AL D+     ++
Sbjct: 147 AAEEYGDK-GTGTHHKALDDARTTYKLF 173


>gi|154271267|ref|XP_001536487.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150409710|gb|EDN05154.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 189

 Score = 37.6 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 12 FDIETTGLDSKNDRIIEIGA 31
           D E TGL+ + D+I++I  
Sbjct: 13 IDCEMTGLNPRTDKILQICC 32


>gi|325474878|gb|EGC78064.1| RNA polymerase sigma-54 factor [Treponema denticola F0402]
          Length = 463

 Score = 37.6 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
           +  +M+   + +N   +  ++   KE K    N +L+ +     +  + EE D+H   ++
Sbjct: 17  MNQQMLNAVAMLNLSSEELQEEVIKEVK---RNPALVFKTSSRVSAASAEEGDKHQSFLE 73

Query: 230 TLGKNAIWDRYISSN 244
           ++  ++   + + ++
Sbjct: 74  SIEDDS--RKTLQAH 86


>gi|312962787|ref|ZP_07777274.1| exodeoxyribonuclease I [Pseudomonas fluorescens WH6]
 gi|311282814|gb|EFQ61408.1| exodeoxyribonuclease I [Pseudomonas fluorescens WH6]
          Length = 475

 Score = 37.6 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALK 61
          D ETTG++ +NDR +++  +    + ++      ++  P        A  
Sbjct: 8  DYETTGINPRNDRPLQVAGIRTDLELNEIGPPVNLYCRPGDDILPHPAAC 57


>gi|119585972|gb|EAW65568.1| three prime histone mRNA exonuclease 1, isoform CRA_a [Homo
           sapiens]
          Length = 288

 Score = 37.6 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 16/189 (8%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
           + D E T   G   +    IIE   V L  ++ +   TFQ ++ P      S   + L G
Sbjct: 71  IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTG 130

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQN---------AEWIAHNAKFDVGFINAELQRINK 115
           IT + +    +F  +  +  D+   +              + +    +       +    
Sbjct: 131 ITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYP 190

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++M+
Sbjct: 191 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HCGLDDSKNIARIAVRML 249

Query: 176 VGGSQINFG 184
             G ++   
Sbjct: 250 QDGCELRIN 258


>gi|149183042|ref|ZP_01861496.1| sporulation inhibitor KapD [Bacillus sp. SG-1]
 gi|148849272|gb|EDL63468.1| sporulation inhibitor KapD [Bacillus sp. SG-1]
          Length = 214

 Score = 37.6 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 13/171 (7%)

Query: 10  IVFDIETTGL-------DSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ D E           + +     IIE G V + +   T++ F  ++ P+      +  
Sbjct: 16  VIIDFE---FSMPERQQNPRGFYPEIIETGLVAVQNGKITDK-FSTYVKPSAFPVLTKRC 71

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K      +   D         ++ +  N +    I      D+  +     +   D    
Sbjct: 72  KQFLSISQSDVDNGIPFHSLIQYLNEINRRGKNKIITWGNMDMKVLRNNCNKAGIDFPFT 131

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              ID     +R              +          H AL D+     ++
Sbjct: 132 GEFIDLSMEYKRFFGDQNQTGLWKAVQEYGREGVGKHHKALDDALTTYHIF 182


>gi|150402066|ref|YP_001329360.1| exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C7]
 gi|150033096|gb|ABR65209.1| Exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C7]
          Length = 190

 Score = 37.6 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 5/126 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL-HGITD 67
            +  D ETTGL      I ++  +   +     + F  +   +    S   +        
Sbjct: 2   YVFLDTETTGLHPGQ--IAQLSYLVTDEDLNLKKVFNQYYSVDRMSRSAAKIHGLTMEIL 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L +  +F     E  D   +  +  I HN  FD+ F+  E +R+  + +   +     
Sbjct: 60  DELSNGMTFEDTVDEVRDDLED--SIIIGHNISFDIRFLKTEFERLGPEYVPKDKFCTMF 117

Query: 128 SIARRK 133
                 
Sbjct: 118 HFTPIC 123


>gi|326795802|ref|YP_004313622.1| oligoribonuclease [Marinomonas mediterranea MMB-1]
 gi|326546566|gb|ADZ91786.1| Oligoribonuclease [Marinomonas mediterranea MMB-1]
          Length = 182

 Score = 37.2 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
           D+E TGLD + + IIEI  +       T++   V    PN   +  + +          
Sbjct: 11 IDLEMTGLDPEMNTIIEIATI------VTDKHLNVLAQGPNLVVHQDKGVMDAMDEWCTT 64

Query: 71 KD 72
            
Sbjct: 65 HH 66


>gi|294791066|ref|ZP_06756224.1| DNA polymerase III, epsilon subunit [Scardovia inopinata F0304]
 gi|294458963|gb|EFG27316.1| DNA polymerase III, epsilon subunit [Scardovia inopinata F0304]
          Length = 282

 Score = 37.2 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLD---YSKTNRTFQVFLCPNGRKNS 56
          FD ETTG  +  D I+    V L +       + T    + P    N 
Sbjct: 29 FDTETTGTRAGKDAIVSASLV-LRNPALGFNGDSTQDWIINPGIPMNP 75


>gi|121606153|ref|YP_983482.1| exonuclease, RNase T and DNA polymerase III [Polaromonas
          naphthalenivorans CJ2]
 gi|120595122|gb|ABM38561.1| Exonuclease, RNase T and DNA polymerase III [Polaromonas
          naphthalenivorans CJ2]
          Length = 550

 Score = 37.2 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 9  KIVFDIETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           ++ D ETTGL        ++E+GA  +  +      F+  L  N       +      
Sbjct: 6  WVLIDTETTGLTVPIF---VVELGAQRMRGWLPEGSPFRRLLNQNLDIPPASSRVHGYT 61


>gi|297243822|ref|ZP_06927752.1| oligoribonuclease [Gardnerella vaginalis AMD]
 gi|296888243|gb|EFH26985.1| oligoribonuclease [Gardnerella vaginalis AMD]
          Length = 235

 Score = 37.2 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50
          R I  D E TGLD  +D + E+  V    +    +    + + P
Sbjct: 16 RLIWIDCEMTGLDIFHDELCEVSVVPTDFNLKVLDDGIDLVIKP 59


>gi|42527905|ref|NP_973003.1| RNA polymerase sigma-54 factor, putative [Treponema denticola ATCC
           35405]
 gi|41818950|gb|AAS12922.1| RNA polymerase sigma-54 factor, putative [Treponema denticola ATCC
           35405]
          Length = 463

 Score = 37.2 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
           +  +M+   + +N   +  ++   KE K    N +L+ +     +  + EE D+H   ++
Sbjct: 17  MNQQMLNAVAMLNLSSEELQEEVIKEVK---RNPALVFKTSSRVSAASAEEGDKHQSFLE 73

Query: 230 TLGKNAIWDRYISSN 244
           ++  ++   + + ++
Sbjct: 74  SIEDDS--RKTLQAH 86


>gi|261252841|ref|ZP_05945414.1| exodeoxyribonuclease I [Vibrio orientalis CIP 102891]
 gi|260936232|gb|EEX92221.1| exodeoxyribonuclease I [Vibrio orientalis CIP 102891]
          Length = 474

 Score = 37.2 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 7/159 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++++     FD ET G     DR  +   V    D++       ++  P       + 
Sbjct: 1   MRQEHQPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQP-----PADY 55

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           L              +  +      +F  + + +    N   ++G+ +            
Sbjct: 56  LPHPEAALITGITPQTAETQGLSEPEFIAKIHEQLATPNT-INLGYNSIRFDDEVTRYTC 114

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
               ID  + + +   S  + L+ +   Y +        
Sbjct: 115 YRNFIDPYAWSWQNGNSRWDLLDVMRACYALRPEGIEWP 153


>gi|224083100|ref|XP_002189554.1| PREDICTED: REX2, RNA exonuclease 2 homolog (S. cerevisiae)
          [Taeniopygia guttata]
          Length = 232

 Score = 37.2 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD + D+I+E+  +
Sbjct: 37 RMVWVDLEMTGLDVEKDQILEMACL 61


>gi|306827727|ref|ZP_07460999.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes ATCC 10782]
 gi|304430045|gb|EFM33082.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes ATCC 10782]
          Length = 819

 Score = 37.2 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 32/196 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48
           M +K   +  V D+E TG                 ++II               +++  +
Sbjct: 1   MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 46

Query: 49  CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
            P+        + L GITD+ L   P F  +    +    +    ++AHN KFD   +  
Sbjct: 47  NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 102

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                 +        +DT+ +A+   P           R  + I     H A+ D+   +
Sbjct: 103 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLGHLSRQ-LNIDLAEAHTAIADARATA 160

Query: 169 DVYIKMMVGGSQINFG 184
            ++++++     +   
Sbjct: 161 ILFLRLLQKIESLPIE 176


>gi|308235417|ref|ZP_07666154.1| oligoribonuclease [Gardnerella vaginalis ATCC 14018]
 gi|311114824|ref|YP_003986045.1| cyanuric acid amidohydrolase [Gardnerella vaginalis ATCC 14019]
 gi|310946318|gb|ADP39022.1| cyanuric acid amidohydrolase [Gardnerella vaginalis ATCC 14019]
          Length = 235

 Score = 37.2 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50
          R I  D E TGLD  +D + E+  V    +    +    + + P
Sbjct: 16 RLIWIDCEMTGLDIFHDELCEVSVVPTDFNLKVLDDGIDLVIKP 59


>gi|209559092|ref|YP_002285564.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes NZ131]
 gi|209540293|gb|ACI60869.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus pyogenes NZ131]
          Length = 833

 Score = 37.2 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 32/196 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48
           M +K   +  V D+E TG                 ++II               +++  +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 60

Query: 49  CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
            P+        + L GITD+ L   P F  +    +    +    ++AHN KFD   +  
Sbjct: 61  NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 116

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                 +        +DT+ +A+   P           R  + I     H A+ D+   +
Sbjct: 117 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLGHLSRQ-LNIDLAEAHTAIADARATA 174

Query: 169 DVYIKMMVGGSQINFG 184
            ++++++     +   
Sbjct: 175 ILFLRLLQKIESLPIE 190


>gi|94993950|ref|YP_602048.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS10750]
 gi|94547458|gb|ABF37504.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes
           MGAS10750]
          Length = 833

 Score = 37.2 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 32/196 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48
           M +K   +  V D+E TG                 ++II               +++  +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 60

Query: 49  CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
            P+        + L GITD+ L   P F  +    +    +    ++AHN KFD   +  
Sbjct: 61  NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 116

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                 +        +DT+ +A+   P           R  + I     H A+ D+   +
Sbjct: 117 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLGHLSRQ-LNIDLAEAHTAIADARATA 174

Query: 169 DVYIKMMVGGSQINFG 184
            ++++++     +   
Sbjct: 175 ILFLRLLQKIESLPIE 190


>gi|94988157|ref|YP_596258.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS9429]
 gi|94992044|ref|YP_600143.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS2096]
 gi|94541665|gb|ABF31714.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes
           MGAS9429]
 gi|94545552|gb|ABF35599.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes
           MGAS2096]
          Length = 833

 Score = 37.2 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 32/196 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48
           M +K   +  V D+E TG                 ++II               +++  +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 60

Query: 49  CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
            P+        + L GITD+ L   P F  +    +    +    ++AHN KFD   +  
Sbjct: 61  NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 116

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                 +        +DT+ +A+   P           R  + I     H A+ D+   +
Sbjct: 117 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLGHLSRQ-LNIDLAEAHTAIADARATA 174

Query: 169 DVYIKMMVGGSQINFG 184
            ++++++     +   
Sbjct: 175 ILFLRLLQKIESLPIE 190


>gi|50760099|ref|XP_417900.1| PREDICTED: similar to CGI-114 protein [Gallus gallus]
          Length = 233

 Score = 37.2 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD + D+I+E+  +
Sbjct: 38 RMVWVDLEMTGLDVEKDQILEMACL 62


>gi|283783530|ref|YP_003374284.1| exonuclease [Gardnerella vaginalis 409-05]
 gi|298252612|ref|ZP_06976406.1| oligoribonuclease [Gardnerella vaginalis 5-1]
 gi|283441129|gb|ADB13595.1| exonuclease [Gardnerella vaginalis 409-05]
 gi|297532976|gb|EFH71860.1| oligoribonuclease [Gardnerella vaginalis 5-1]
          Length = 235

 Score = 37.2 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50
          R I  D E TGLD  +D + E+  V    +    +    + + P
Sbjct: 16 RLIWIDCEMTGLDIFHDELCEVSVVPTDFNLKVLDDGIDLVIKP 59


>gi|195503017|ref|XP_002098476.1| GE23924 [Drosophila yakuba]
 gi|194184577|gb|EDW98188.1| GE23924 [Drosophila yakuba]
          Length = 184

 Score = 37.2 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 13 DIETTGLDSKNDRIIEIGAV---ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
          D+E TGLD + D+I+E+  +   + L+       F   +                   
Sbjct: 15 DLEMTGLDIEKDKILEVSCIITDKDLNVKSEGPCFA--INHPQEVYDTMNEWCKEHHY 70


>gi|134045738|ref|YP_001097224.1| exonuclease, RNase T and DNA polymerase III [Methanococcus
           maripaludis C5]
 gi|132663363|gb|ABO35009.1| Exonuclease, RNase T and DNA polymerase III [Methanococcus
           maripaludis C5]
          Length = 191

 Score = 37.2 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 3/125 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL      I ++  +   +     + F  +   +    S   +    +   
Sbjct: 2   YVFLDTETTGLHPGQ--IAQLSYLVTDEDLNLKKVFNQYYLVDHMSRSAAKVHGLTMDIL 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                        +     + +++  I HN  FD+ F+ AE +R+  + +   +      
Sbjct: 60  DELSNGMTFEDTVDEVRD-DLEDSVIIGHNISFDIRFLKAEFERLGPEYIPKDKFCTMFH 118

Query: 129 IARRK 133
                
Sbjct: 119 FTPIC 123


>gi|111026133|ref|YP_708416.1| exonuclease [Rhodococcus jostii RHA1]
 gi|110824976|gb|ABH00258.1| possible exonuclease [Rhodococcus jostii RHA1]
          Length = 190

 Score = 37.2 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 8/124 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGIT 66
           R +V D+E+T LD     IIEI  V     + T        + P      P+A  +HGI 
Sbjct: 20  RAVVLDVESTNLD---GSIIEI-CVL---DAATGDPLLDTLVDPGEVPIHPDAYAVHGIA 72

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L   P +S++          +                +     ++   L  S +   
Sbjct: 73  PADLIGAPGWSTVHQALIAVTTGRVTLSYHSEFDKGRVLHDCARHGLDPAHLADSEMWGC 132

Query: 127 LSIA 130
           +   
Sbjct: 133 IMRM 136


>gi|39945028|ref|XP_362051.1| hypothetical protein MGG_04496 [Magnaporthe oryzae 70-15]
 gi|145011396|gb|EDJ96052.1| hypothetical protein MGG_04496 [Magnaporthe oryzae 70-15]
          Length = 223

 Score = 37.2 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 2/57 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGL+  ++ IIEI  +        K    +   +     +            
Sbjct: 11 IDCEMTGLNPDSEEIIEIFCLVTDGDLNLKDEEGWGTVVHQTQERMDKMDEWCTKQH 67


>gi|312199001|ref|YP_004019062.1| exonuclease RNase T and DNA polymerase III [Frankia sp. EuI1c]
 gi|311230337|gb|ADP83192.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EuI1c]
          Length = 238

 Score = 37.2 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 5  NKM-RKIVFDIETTGLDSKNDRIIEIGAVELLD 36
           +M R +  D E TGLD  +D ++E+  +    
Sbjct: 11 RQMDRLVWIDCEMTGLDPASDVLLEVACLVTDG 43


>gi|303240238|ref|ZP_07326757.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
           cellulolyticus CD2]
 gi|302592148|gb|EFL61877.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
           cellulolyticus CD2]
          Length = 223

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 60/179 (33%), Gaps = 18/179 (10%)

Query: 9   KIVFDIE-TTG-----------LDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPN- 51
            IV D+E +TG           L  K       II+IGA+ L    K    F  F+ P  
Sbjct: 37  YIVLDLEFSTGYKYVNKDYAKTLFPKYEKRPAEIIQIGAIMLNHNYKIIDKFNKFITPCI 96

Query: 52  GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            +K +    +L G+ DE LK+  SF      F  +  ++        +  D        +
Sbjct: 97  YQKINKYVTELTGLNDENLKNNISFVECMDSFEKWIGKKEYILCGW-SNSDQKVFEDNFK 155

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             ++       ++D   I   +   S                H + + A   +++   +
Sbjct: 156 YHSQKCSLNLNMLDIQKIFNPEKQISLKKAIDELNIQKSKPFHNALNDAEYTANIFQKI 214


>gi|154314837|ref|XP_001556742.1| hypothetical protein BC1G_04760 [Botryotinia fuckeliana B05.10]
 gi|150848298|gb|EDN23491.1| hypothetical protein BC1G_04760 [Botryotinia fuckeliana B05.10]
          Length = 180

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 2/54 (3%)

Query: 15 ETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALKLHGIT 66
          E TGLD +ND IIEI  V      +      +   +  +               
Sbjct: 3  EMTGLDVENDVIIEISCVITNGNLEVMDEKGWNAVIHQDQETMDKMDEWCTTTH 56


>gi|320352856|ref|YP_004194195.1| Exonuclease RNase T and DNA polymerase III [Desulfobulbus
          propionicus DSM 2032]
 gi|320121358|gb|ADW16904.1| Exonuclease RNase T and DNA polymerase III [Desulfobulbus
          propionicus DSM 2032]
          Length = 181

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT 40
           D+E TGL+   D+I+E+  V    + + 
Sbjct: 10 IDLEMTGLNPFTDKILEVATVVTDSHLEI 38


>gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
 gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
          Length = 931

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIG-AVE 33
           N  + +  D ETTGLD+  D II I  A++
Sbjct: 357 NAKKLVCIDFETTGLDTLTDEIIGISFAIK 386


>gi|290473715|ref|YP_003466589.1| putative DNA-directed DNA polymerase [Xenorhabdus bovienii SS-2004]
 gi|289173022|emb|CBJ79795.1| putative DNA-directed DNA polymerase [Xenorhabdus bovienii SS-2004]
          Length = 245

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 72/210 (34%), Gaps = 12/210 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDE 68
           ++ D ETTGL S ++       +E+   +          + P  +K  P+A ++H IT+E
Sbjct: 22  VILDTETTGLKSDDEI------IEISIINADGNVLLDTLIKPQ-KKIPPDATRIHRITNE 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ KP +S ++ ++ +    +       +    +     +   +    +     +   +
Sbjct: 75  DVQHKPLWSDVYKKYREIVEGKTVVIYNKSYDTKIIRQTCKKYELPTPRIKSECAMLLYA 134

Query: 129 IA----RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
                  ++    +    +              H AL D+ +  ++   M      ++  
Sbjct: 135 KYEGIINKRTCEYKWHKLTDAIYKNNIQVTGEAHRALTDARMTLELLKFMACAEVNVSPR 194

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214
              N+   +K+ K +       K+      
Sbjct: 195 VHMNDSVHYKKNKPSNSIQPTKKKSNFQKI 224


>gi|17542402|ref|NP_501748.1| PIS (Pax-2, IA-1/6, Smad-2 interacting protein) homolog family
           member (pis-1) [Caenorhabditis elegans]
 gi|5824613|emb|CAB54313.1| C. elegans protein T13F2.3b, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1076

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 3/124 (2%)

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            +  K P+   + I    +     P  R ++ +   +    +                + 
Sbjct: 679 AQEWKVPVVNFQWIADAYVCDEASPQKRPNVENPRYQLENPVMTNVNTSPNHIEGASQE- 737

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPN--ISLLKRDKPLFTRITKEELDEHDKTI 228
           +  MM              ++  +  K    N      KR        T++E+      +
Sbjct: 738 FGAMMSCWKSQTIIADQAYEKARQNRKTLQNNTFFFPSKRLSDQAVAPTEDEIKSSRARL 797

Query: 229 QTLG 232
             + 
Sbjct: 798 DEIK 801


>gi|326478035|gb|EGE02045.1| zinc knuckle domain-containing protein [Trichophyton equinum CBS
           127.97]
          Length = 542

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/174 (9%), Positives = 32/174 (18%), Gaps = 5/174 (2%)

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
            G  +     K       +   +  F   +          + +                 
Sbjct: 241 EGHLSDVCPNKKCEHCGAWEVHESRFCPTWRRCQKCRERGHDKDSCSAPLQGSAAEVPCD 300

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              +   ++    +                  S  +                 SH  S  
Sbjct: 301 LCGSDRHIESQCDLMWKQPHPTYTTGKLFISISCAQCTSSQHLIGDCPSVRAPSHSTSWS 360

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
                      +    T++        +T   I  LK         T EE + H
Sbjct: 361 L-----KAFDPSIISNTSQSSTSGPNARTNGAIPQLKIKGRAQREPTPEEHELH 409


>gi|326470809|gb|EGD94818.1| hypothetical protein TESG_02321 [Trichophyton tonsurans CBS 112818]
          Length = 542

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/174 (9%), Positives = 32/174 (18%), Gaps = 5/174 (2%)

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
            G  +     K       +   +  F   +          + +                 
Sbjct: 241 EGHLSDVCPNKKCEHCGAWEVHESRFCPTWRRCQKCRERGHDKDSCSAPLQGSAAEVPCD 300

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              +   ++    +                  S  +                 SH  S  
Sbjct: 301 LCGSDRHIESQCDLMWKQPHPTYTTGKLFISISCAQCTSSQHLIGDCPSVRAPSHSTSWS 360

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
                      +    T++        +T   I  LK         T EE + H
Sbjct: 361 L-----KAFDPSIISNTSQSSTSGPNARTNGAIPQLKIKGRAQREPTPEEHELH 409


>gi|319761926|ref|YP_004125863.1| exonuclease rnase t and DNA polymerase iii [Alicycliphilus
          denitrificans BC]
 gi|330826210|ref|YP_004389513.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
          denitrificans K601]
 gi|317116487|gb|ADU98975.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
          denitrificans BC]
 gi|329311582|gb|AEB85997.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
          denitrificans K601]
          Length = 203

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D E +GL+ + +R++EI  V
Sbjct: 33 LDCEMSGLNPETERLLEIAVV 53


>gi|222111865|ref|YP_002554129.1| oligoribonuclease [Acidovorax ebreus TPSY]
 gi|221731309|gb|ACM34129.1| Exonuclease RNase T and DNA polymerase III [Acidovorax ebreus
          TPSY]
          Length = 192

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D E +GL+ + +R++EI  V
Sbjct: 22 LDCEMSGLNPETERLLEIAVV 42


>gi|121595648|ref|YP_987544.1| oligoribonuclease [Acidovorax sp. JS42]
 gi|166215746|sp|A1WB43|ORN_ACISJ RecName: Full=Oligoribonuclease
 gi|120607728|gb|ABM43468.1| Exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42]
          Length = 192

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D E +GL+ + +R++EI  V
Sbjct: 22 LDCEMSGLNPETERLLEIAVV 42


>gi|115352016|ref|YP_773855.1| exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria
           AMMD]
 gi|115282004|gb|ABI87521.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria
           AMMD]
          Length = 180

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 13/178 (7%)

Query: 2   IRKNKMRKIVF--DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           ++ N  R++    D+ET+G       ++ IGA ++ D     +TF   L P  R   P+A
Sbjct: 1   MKSN--REVFLSVDVETSGPIPGEFSLLTIGACDVFD---PQQTFSCELKPTTRNADPKA 55

Query: 60  LKLHG------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           L++ G        D                     +    ++  NA FD  F+N    R 
Sbjct: 56  LEVTGLSLDRLERDGLDPVVGMQKFRDWVISTAGPDATPVFVGFNAPFDWSFVNYYFHRY 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +       +D  S+      SS     S      +  + +  H AL D+   ++++
Sbjct: 116 LGENPFGFAALDIKSMYMGAARSSWAQTRSSQIAAALNPTLKGDHDALHDAQYQAELF 173


>gi|166032316|ref|ZP_02235145.1| hypothetical protein DORFOR_02019 [Dorea formicigenerans ATCC
           27755]
 gi|166028039|gb|EDR46796.1| hypothetical protein DORFOR_02019 [Dorea formicigenerans ATCC
           27755]
          Length = 218

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 59/188 (31%), Gaps = 8/188 (4%)

Query: 7   MRKIVFDIETTGLDSKN--------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  +V D+E   +            +  I+IGAV L +  K   T   F+ P        
Sbjct: 1   MNYLVIDLEMCKVPRDYRSKRYKYANETIQIGAVLLDEEFKRIGTLSQFVHPEHGVIDYF 60

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
              L GI +  +K  P          ++  ++  +  A +       ++    +   D  
Sbjct: 61  IENLTGIKNGQVKHTPRLQKALLHMLNWIGDREYKVYAWSGSDRAQILHEIKAKNIVDEK 120

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             S + ++  +  +     R +++                       L   V   +++  
Sbjct: 121 IASFMEESRWVDYQDIFMKRYEMSRKMSLEEALGRADIDPEGRFHDGLNDAVNTGLLIEK 180

Query: 179 SQINFGFK 186
            ++N  ++
Sbjct: 181 LELNPDYQ 188


>gi|55670498|pdb|1W0H|A Chain A, Crystallographic Structure Of The Nuclease Domain Of
          3'hexo, A Deddh Family Member, Bound To Ramp
          Length = 204

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
          + D E T   G   +    IIE   V L  ++ +   TFQ ++ P      S   + L G
Sbjct: 14 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTG 73

Query: 65 ITDEFLKDKPSFSSIFSEFWDF 86
          IT + +    +F  +  +  D+
Sbjct: 74 ITQDQVDRADTFPQVLKKVIDW 95


>gi|238918361|ref|YP_002931875.1| oligoribonuclease [Edwardsiella ictaluri 93-146]
 gi|238867929|gb|ACR67640.1| oligoribonuclease [Edwardsiella ictaluri 93-146]
          Length = 167

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/14 (71%), Positives = 11/14 (78%)

Query: 17 TGLDSKNDRIIEIG 30
          TGLD + DRIIEI 
Sbjct: 2  TGLDPQRDRIIEIA 15


>gi|17542400|ref|NP_501749.1| PIS (Pax-2, IA-1/6, Smad-2 interacting protein) homolog family
           member (pis-1) [Caenorhabditis elegans]
 gi|3879830|emb|CAB03354.1| C. elegans protein T13F2.3a, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1074

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 3/124 (2%)

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            +  K P+   + I    +     P  R ++ +   +    +                + 
Sbjct: 677 AQEWKVPVVNFQWIADAYVCDEASPQKRPNVENPRYQLENPVMTNVNTSPNHIEGASQE- 735

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPN--ISLLKRDKPLFTRITKEELDEHDKTI 228
           +  MM              ++  +  K    N      KR        T++E+      +
Sbjct: 736 FGAMMSCWKSQTIIADQAYEKARQNRKTLQNNTFFFPSKRLSDQAVAPTEDEIKSSRARL 795

Query: 229 QTLG 232
             + 
Sbjct: 796 DEIK 799


>gi|333029493|ref|ZP_08457554.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
 gi|332740090|gb|EGJ70572.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
          Length = 928

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 2   IRKNKM--RKIVFDIETTGLDSKNDRIIEI 29
           + K  M  ++I  D ETTGL++    I+ I
Sbjct: 348 LSKKLMPFKEIALDTETTGLEAMEAEIVGI 377


>gi|310658482|ref|YP_003936203.1| hypothetical protein CLOST_1178 [Clostridium sticklandii DSM 519]
 gi|308825260|emb|CBH21298.1| protein of unknown function [Clostridium sticklandii]
          Length = 303

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVEL--LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
          FDIETTGL+SK D II I A      +     + F   +             +  +    
Sbjct: 23 FDIETTGLNSKYDSIILICAAFYYSDNEILIRQYFAEDIKDEKSIILYFLEDIASMRRCI 82

Query: 70 LKDKPSFSSIF 80
            +  +F   F
Sbjct: 83 NFNGNTFDLPF 93


>gi|220934255|ref|YP_002513154.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
          HL-EbGR7]
 gi|219995565|gb|ACL72167.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
          HL-EbGR7]
          Length = 181

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD+ ND IIEI 
Sbjct: 11 IDLEMTGLDTDNDYIIEIA 29


>gi|290979061|ref|XP_002672253.1| predicted protein [Naegleria gruberi]
 gi|284085828|gb|EFC39509.1| predicted protein [Naegleria gruberi]
          Length = 1200

 Score = 37.2 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 8   RKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + I+FD ETTG  + +D  +I E           T  +    + P  +  S  + K+ GI
Sbjct: 808 KYILFDFETTGFWTNDDPPKITE----YCFLNMATGESIYGLVNP-TKSISYHSTKITGI 862

Query: 66  TDEFLKDKPSFSSIFSEFWDFF 87
              +++DKP          DF 
Sbjct: 863 NLNYVRDKPIIEKELDFIIDFI 884


>gi|332559626|ref|ZP_08413948.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
 gi|332277338|gb|EGJ22653.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
          Length = 204

 Score = 37.2 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 10 IVFDIETTGLDSKNDR--IIEIGA 31
          +  D ET GLD + DR  ++++ A
Sbjct: 20 VAIDTETMGLDPRRDRLCVVQLSA 43


>gi|330960097|gb|EGH60357.1| oligoribonuclease [Pseudomonas syringae pv. maculicola str.
          ES4326]
          Length = 178

 Score = 37.2 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 6/44 (13%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF 47
          +NK   I  D+E TGLD   D IIE+  +       T+      
Sbjct: 2  QNKQNLIWIDLEMTGLDPDTDVIIEMATI------ITDSELSTL 39


>gi|221640647|ref|YP_002526909.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131]
 gi|221161428|gb|ACM02408.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131]
          Length = 204

 Score = 37.2 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 10 IVFDIETTGLDSKNDR--IIEIGA 31
          +  D ET GLD + DR  ++++ A
Sbjct: 20 VAIDTETMGLDPRRDRLCVVQLSA 43


>gi|77464733|ref|YP_354237.1| ribonuclease D [Rhodobacter sphaeroides 2.4.1]
 gi|77389151|gb|ABA80336.1| Ribonuclease D [Rhodobacter sphaeroides 2.4.1]
          Length = 204

 Score = 37.2 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 10 IVFDIETTGLDSKNDR--IIEIGA 31
          +  D ET GLD + DR  ++++ A
Sbjct: 20 VAIDTETMGLDPRRDRLCVVQLSA 43


>gi|126463573|ref|YP_001044687.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029]
 gi|126105237|gb|ABN77915.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029]
          Length = 204

 Score = 37.2 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 10 IVFDIETTGLDSKNDR--IIEIGA 31
          +  D ET GLD + DR  ++++ A
Sbjct: 20 VAIDTETMGLDPRRDRLCVVQLSA 43


>gi|254520242|ref|ZP_05132298.1| exonuclease [Clostridium sp. 7_2_43FAA]
 gi|226913991|gb|EEH99192.1| exonuclease [Clostridium sp. 7_2_43FAA]
          Length = 300

 Score = 37.2 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 24 DRIIEIGAVELLDYSKTNRTFQVFLCP 50
          + IIEIGA++L +Y K    F+ ++ P
Sbjct: 39 NEIIEIGAIKLDNYMKPLEEFKTYIKP 65


>gi|118594944|ref|ZP_01552291.1| oligoribonuclease [Methylophilales bacterium HTCC2181]
 gi|118440722|gb|EAV47349.1| oligoribonuclease [Methylophilales bacterium HTCC2181]
          Length = 182

 Score = 37.2 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          M  KN    I  D+E +GLD +ND+++EI  V
Sbjct: 1  MDEKNNNNLIWLDMEMSGLDPENDKVLEIAVV 32


>gi|328949709|ref|YP_004367044.1| ATP-dependent DNA helicase, RecQ family [Marinithermus
          hydrothermalis DSM 14884]
 gi|328450033|gb|AEB10934.1| ATP-dependent DNA helicase, RecQ family [Marinithermus
          hydrothermalis DSM 14884]
          Length = 1673

 Score = 37.2 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 7  MR-KIVFDIETTGLDSKNDRIIEI 29
          M+  +  D+E TG D    +I++I
Sbjct: 1  MKPYVFIDLEATGTDPNQAQILQI 24


>gi|315122155|ref|YP_004062644.1| exonuclease I [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495557|gb|ADR52156.1| exonuclease I [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 472

 Score = 37.2 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 3/118 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---SPEALKLHGI 65
            +++D ET GLD   DR  +   + +    +T ++ +VF C             L     
Sbjct: 4   FVIYDYETFGLDVARDRPAQFAGIRIDHQLETIQSKEVFFCKPSDDYLVDPESVLITGIT 63

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
             + L+D           + FF + N     +N        +  +   N         
Sbjct: 64  PQKALRDGVVEHEFAQRVYQFFCKPNTCIFGYNNIRFDDKYSQNIFYRNFYDPYGWSY 121


>gi|213621109|ref|ZP_03373892.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-2068]
          Length = 166

 Score = 37.2 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/14 (71%), Positives = 11/14 (78%)

Query: 17 TGLDSKNDRIIEIG 30
          TGLD + DRIIEI 
Sbjct: 1  TGLDPERDRIIEIA 14


>gi|330860723|emb|CBX71015.1| exodeoxyribonuclease 10 [Yersinia enterocolitica W22703]
          Length = 220

 Score = 37.2 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 17/171 (9%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET GL      I+EI +++++D + +       + P+ R  S +A+ +H IT
Sbjct: 1   MYFRVIDTETCGL---EGGIVEIASIDVMDGALS-NPMSDLVSPD-RPISLDAMVIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++ KP  +    ++       +  ++AHNA FD G +                ++  
Sbjct: 56  EEMVEGKPRIAVAVRKYQ-----GSPYYVAHNAPFDRGVLPEMGG-------QWICMLKL 103

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +       S   L    +       +   H AL D ++ + +  ++M  
Sbjct: 104 ARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIMRD 154


>gi|271968895|ref|YP_003343091.1| oligoribonuclease [Streptosporangium roseum DSM 43021]
 gi|270512070|gb|ACZ90348.1| putative oligoribonuclease; K01175 [Streptosporangium roseum DSM
          43021]
          Length = 200

 Score = 37.2 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGR 53
           D E TGLD   D ++E+  V + D      +    V + P   
Sbjct: 8  IDCEMTGLDLGRDALVEVACV-VTDGELNQLDEGVDVVIKPPPE 50


>gi|215273692|dbj|BAG84710.1| erythrocyte protein band 4.1 [Mus musculus]
          Length = 823

 Score = 37.2 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 10/38 (26%)

Query: 217 TKEELDEHDKTIQTLGKNAI----------WDRYISSN 244
           ++EE+ +H  +I  L KN +          WD+ +S++
Sbjct: 633 SQEEIKKHHASISELKKNCMESVPEPRPSEWDKRLSTH 670


>gi|190572046|ref|YP_001966288.1| unknown [Pseudomonas sp. CT14]
 gi|75707029|gb|ABA25992.1| unknown [Pseudomonas sp. CT14]
          Length = 197

 Score = 37.2 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 14/179 (7%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG+    D + EI  ++              + P  +    EA  +H IT++ + 
Sbjct: 16  LDTETTGVG-DGDEVCEITILDASGTPL----LNTLIRP-TQPIPAEATGIHRITNDMVA 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIA--------HNAKFDVGFINAELQRINKDPLDPSRI 123
             P++  I  ++    + +                     G +   L       L     
Sbjct: 70  TAPAWPEIAEQYASIVSGRTVVAYNASFDERLLSQTHQRHGLVAPALATACAMLLYAEWH 129

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            + +             L    +  G+      +  A     L    Y+     G + +
Sbjct: 130 GEWVEGRYGAWQWRWIKLIEAARACGVLEDGAHRSLADARMTLGVLRYLHKRTNGRKPS 188


>gi|73669256|ref|YP_305271.1| hypothetical protein Mbar_A1749 [Methanosarcina barkeri str.
           Fusaro]
 gi|72396418|gb|AAZ70691.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 249

 Score = 37.2 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 7/39 (17%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
             DIETTGL    D I     V + +  ++      ++ 
Sbjct: 89  FVDIETTGLSKSRDEIT---IVGIYNGKESK----TYIK 120


>gi|254787466|ref|YP_003074895.1| oligoribonuclease [Teredinibacter turnerae T7901]
 gi|237686441|gb|ACR13705.1| oligoribonuclease [Teredinibacter turnerae T7901]
          Length = 182

 Score = 37.2 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37
           D+E TGL  + D IIEI  V   ++
Sbjct: 11 VDLEMTGLVPERDFIIEIATVVTDEH 36


>gi|297662820|ref|XP_002809887.1| PREDICTED: protein maelstrom homolog [Pongo abelii]
          Length = 434

 Score = 37.2 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/96 (12%), Positives = 19/96 (19%), Gaps = 2/96 (2%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
            EIG V+          F  F+ P   K             +     P  +         
Sbjct: 137 CEIGCVKYSLQEGIMADFHSFINPG--KIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 194

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +    +I  N             R   +      
Sbjct: 195 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 230


>gi|28872064|ref|NP_794683.1| oligoribonuclease [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213967916|ref|ZP_03396062.1| oligoribonuclease [Pseudomonas syringae pv. tomato T1]
 gi|301384436|ref|ZP_07232854.1| oligoribonuclease [Pseudomonas syringae pv. tomato Max13]
 gi|302132276|ref|ZP_07258266.1| oligoribonuclease [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|37999378|sp|Q87VI6|ORN_PSESM RecName: Full=Oligoribonuclease
 gi|28855317|gb|AAO58378.1| oligoribonuclease [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213927259|gb|EEB60808.1| oligoribonuclease [Pseudomonas syringae pv. tomato T1]
 gi|331014602|gb|EGH94658.1| oligoribonuclease [Pseudomonas syringae pv. lachrymans str.
          M302278PT]
          Length = 178

 Score = 37.2 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +NK   I  D+E TGLD   D IIE+ 
Sbjct: 2  QNKQNLIWIDLEMTGLDPDTDVIIEMA 28


>gi|89094643|ref|ZP_01167580.1| oligoribonuclease [Oceanospirillum sp. MED92]
 gi|89081113|gb|EAR60348.1| oligoribonuclease [Oceanospirillum sp. MED92]
          Length = 186

 Score = 37.2 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+   D IIEI 
Sbjct: 15 IDLEMTGLEPATDVIIEIA 33


>gi|320547520|ref|ZP_08041806.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
          equinus ATCC 9812]
 gi|320447865|gb|EFW88622.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
          equinus ATCC 9812]
          Length = 195

 Score = 37.2 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 9  KIVFDIETTGLD--SKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           I FD+E    +  ++   II++ AV+  D  +   +F  ++
Sbjct: 7  YIAFDLE---FNTVAEVSHIIQVSAVKFKDGEEI-DSFDTYV 44


>gi|290474872|ref|YP_003467752.1| Exonuclease [Xenorhabdus bovienii SS-2004]
 gi|289174185|emb|CBJ80974.1| Exonuclease [Xenorhabdus bovienii SS-2004]
          Length = 186

 Score = 37.2 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 13/182 (7%)

Query: 7   MR----KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           MR     I  D+ET+G       ++ IGA  +  +      +     P+  ++ PE+L +
Sbjct: 1   MRKSEVYISVDVETSGPVPGVFSLLSIGACLV--HQAEVAIYLEL-QPDSPEHDPESLAV 57

Query: 63  HGITDEFLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            G+    L+                        Q A ++  N  FD  FIN    +    
Sbjct: 58  TGLDLMQLEQDGLPPSAAMHQFKVWIESVIDPGQKAIFVGLNTPFDWSFINYYFYKYVGI 117

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  ID  +     +  S ++  S      +    +  H AL D+   ++++  M+ 
Sbjct: 118 NPFGFTAIDIKAYFMGAYGYSWSETKSSHMSAILKPCTKPNHNALEDARFQAELFALMLA 177

Query: 177 GG 178
             
Sbjct: 178 RQ 179


>gi|295836748|ref|ZP_06823681.1| oligoribonuclease [Streptomyces sp. SPB74]
 gi|197697620|gb|EDY44553.1| oligoribonuclease [Streptomyces sp. SPB74]
          Length = 198

 Score = 37.2 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGR 53
          R +  D E TGL   ND +IE+ A V   + +       + + P G 
Sbjct: 4  RMVWIDCEMTGLSLANDALIEVAALVTDSELNILGDGVDIVIRPPGE 50


>gi|15240840|ref|NP_196388.1| exonuclease family protein [Arabidopsis thaliana]
 gi|9759593|dbj|BAB11450.1| exonuclease-like protein [Arabidopsis thaliana]
 gi|332003813|gb|AED91196.1| exonuclease family protein [Arabidopsis thaliana]
          Length = 468

 Score = 37.2 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 7/92 (7%)

Query: 11 VFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCP-NGRKNSPEALKLHGIT 66
           FD+ETT +  +  R  I+E G++ +     T  R++   + P +    S  +++ +GI 
Sbjct: 11 FFDVETT-VPKRGQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLSVRCNGIK 69

Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98
           + +   P F+ I    +D  +     W  HN
Sbjct: 70 RDDVVLAPLFADIADTVYDILHG--RIWAGHN 99


>gi|325921108|ref|ZP_08182979.1| Exodeoxyribonuclease I subunit C [Xanthomonas gardneri ATCC 19865]
 gi|325548380|gb|EGD19363.1| Exodeoxyribonuclease I subunit C [Xanthomonas gardneri ATCC 19865]
          Length = 481

 Score = 37.2 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 33/118 (27%), Gaps = 3/118 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65
            + +D+ET G D +  RI +  AV               ++ P      +    +     
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFYVQPADDLLPSPYATMVTGIT 64

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
               L++  S +  F+   +  +      + +N+              N         
Sbjct: 65  PQHALREGVSEAEAFARISEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122


>gi|71282475|ref|YP_271028.1| oligoribonuclease [Colwellia psychrerythraea 34H]
 gi|123630997|sp|Q47VZ4|ORN_COLP3 RecName: Full=Oligoribonuclease
 gi|71148215|gb|AAZ28688.1| oligoribonuclease [Colwellia psychrerythraea 34H]
          Length = 181

 Score = 37.2 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+   D I+EI  +
Sbjct: 11 LDLEMTGLEPVEDVILEIAII 31


>gi|325846496|ref|ZP_08169411.1| conserved domain protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325481254|gb|EGC84295.1| conserved domain protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 303

 Score = 36.8 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44
          + + DIETTGLD   D ++ +G +           +
Sbjct: 17 ECILDIETTGLDPNTDSLVVLGLIYFNKDKFYIDQY 52


>gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium]
          Length = 916

 Score = 36.8 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 13/164 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETT LD  N  I+  G V L+D      +F V   P G        +L        
Sbjct: 342 VFDLETTSLDYMNAAIV--GWVFLVD----KDSFYV---PVGHDYLDAPKQLDFDDALLT 392

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                     ++              +    +    +  ++    + +     +D LS+ 
Sbjct: 393 LKPILQDESINKVGQNLKYDAHVLANYQIDLNGISDDTMVKSYVLNSVATRHNMDDLSMH 452

Query: 131 RRKHPSSRNDLNSLCKRYGITISH----RSKHGALLDSHLLSDV 170
              H +      +   +  IT +      +   A  D  +  ++
Sbjct: 453 YLNHQTIHFSDVAGKGKKQITFNQVGLEAAFPYACEDVIVTHEL 496


>gi|302062272|ref|ZP_07253813.1| oligoribonuclease [Pseudomonas syringae pv. tomato K40]
          Length = 107

 Score = 36.8 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +NK   I  D+E TGLD   D IIE+ 
Sbjct: 2  QNKQNLIWIDLEMTGLDPDTDVIIEMA 28


>gi|332284719|ref|YP_004416630.1| hypothetical protein PT7_1466 [Pusillimonas sp. T7-7]
 gi|330428672|gb|AEC20006.1| hypothetical protein PT7_1466 [Pusillimonas sp. T7-7]
          Length = 169

 Score = 36.8 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 15 ETTGLDSKNDRIIEIGAV 32
          E TGLD + +RIIE+  V
Sbjct: 2  EMTGLDPEKERIIEVAVV 19


>gi|332219429|ref|XP_003258858.1| PREDICTED: protein maelstrom homolog isoform 2 [Nomascus
           leucogenys]
          Length = 403

 Score = 36.8 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
            EIG V+          F  F+ P   +             +     P  +         
Sbjct: 106 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 163

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +    +I  N             R   +      
Sbjct: 164 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 199


>gi|194379278|dbj|BAG63605.1| unnamed protein product [Homo sapiens]
 gi|315570461|gb|ADU33235.1| maelstrom isoform 2 [Homo sapiens]
          Length = 403

 Score = 36.8 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
            EIG V+          F  F+ P   +             +     P  +         
Sbjct: 106 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 163

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +    +I  N             R   +      
Sbjct: 164 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 199


>gi|162147891|ref|YP_001602352.1| exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542508|ref|YP_002274737.1| Exonuclease RNase T and DNA polymerase III [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786468|emb|CAP56050.1| putative exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209530185|gb|ACI50122.1| Exonuclease RNase T and DNA polymerase III [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 269

 Score = 36.8 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 46/172 (26%), Gaps = 9/172 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHGITDE 68
           V D+ET+G ++ +  I+EIG  ++        T+ +   P  R   P             
Sbjct: 18  VIDLETSGRNAADGGIVEIGWQDV-ARDADG-TWALAGPPGARLTHPGGPITPQTMAIHH 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                   +  F+E             A  A             +          I T  
Sbjct: 76  ITDAHVRDAPPFAEIAPDILHPADRPAAMAAHRASFEQGWIRGSLPPALTTGLHWICTYK 135

Query: 129 IARRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175
            A R  P      N   +                H A  D+++ +     M+
Sbjct: 136 CALRLWPDEPGHSNQGLRHSRRPAGLERALGDPPHRAGPDAYVTAHHLRDML 187


>gi|256821737|ref|YP_003145700.1| Exonuclease RNase T and DNA polymerase III [Kangiella koreensis
          DSM 16069]
 gi|256795276|gb|ACV25932.1| Exonuclease RNase T and DNA polymerase III [Kangiella koreensis
          DSM 16069]
          Length = 182

 Score = 36.8 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + KN    I  D+E TGLD + D +IEI 
Sbjct: 1  MTKNDDNLIWVDLEMTGLDPETDVVIEIA 29


>gi|6453516|emb|CAB61396.1| hypothetical protein [Homo sapiens]
          Length = 376

 Score = 36.8 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
            EIG V+          F  F+ P   +             +     P  +         
Sbjct: 79  CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 136

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +    +I  N             R   +      
Sbjct: 137 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 172


>gi|15609648|ref|NP_217027.1| oligoribonuclease [Mycobacterium tuberculosis H37Rv]
 gi|15842039|ref|NP_337076.1| oligoribonuclease [Mycobacterium tuberculosis CDC1551]
 gi|31793691|ref|NP_856184.1| oligoribonuclease [Mycobacterium bovis AF2122/97]
 gi|121638393|ref|YP_978617.1| oligoribonuclease [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148662347|ref|YP_001283870.1| oligoribonuclease [Mycobacterium tuberculosis H37Ra]
 gi|148823708|ref|YP_001288462.1| oligoribonuclease [Mycobacterium tuberculosis F11]
 gi|167966612|ref|ZP_02548889.1| oligoribonuclease [Mycobacterium tuberculosis H37Ra]
 gi|215404448|ref|ZP_03416629.1| oligoribonuclease [Mycobacterium tuberculosis 02_1987]
 gi|215412277|ref|ZP_03421037.1| oligoribonuclease [Mycobacterium tuberculosis 94_M4241A]
 gi|215427894|ref|ZP_03425813.1| oligoribonuclease [Mycobacterium tuberculosis T92]
 gi|215431457|ref|ZP_03429376.1| oligoribonuclease [Mycobacterium tuberculosis EAS054]
 gi|215446761|ref|ZP_03433513.1| oligoribonuclease [Mycobacterium tuberculosis T85]
 gi|218754244|ref|ZP_03533040.1| oligoribonuclease [Mycobacterium tuberculosis GM 1503]
 gi|219558511|ref|ZP_03537587.1| oligoribonuclease [Mycobacterium tuberculosis T17]
 gi|224990887|ref|YP_002645574.1| oligoribonuclease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798409|ref|YP_003031410.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 1435]
 gi|254232640|ref|ZP_04925967.1| oligoribonuclease orn [Mycobacterium tuberculosis C]
 gi|254366813|ref|ZP_04982855.1| oligoribonuclease orn [Mycobacterium tuberculosis str. Haarlem]
 gi|254551558|ref|ZP_05142005.1| oligoribonuclease [Mycobacterium tuberculosis '98-R604
          INH-RIF-EM']
 gi|260187518|ref|ZP_05764992.1| oligoribonuclease [Mycobacterium tuberculosis CPHL_A]
 gi|260201636|ref|ZP_05769127.1| oligoribonuclease [Mycobacterium tuberculosis T46]
 gi|260205826|ref|ZP_05773317.1| oligoribonuclease [Mycobacterium tuberculosis K85]
 gi|289444042|ref|ZP_06433786.1| oligoribonuclease orn [Mycobacterium tuberculosis T46]
 gi|289448156|ref|ZP_06437900.1| oligoribonuclease orn [Mycobacterium tuberculosis CPHL_A]
 gi|289553697|ref|ZP_06442907.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 605]
 gi|289570671|ref|ZP_06450898.1| oligoribonuclease orn [Mycobacterium tuberculosis T17]
 gi|289575216|ref|ZP_06455443.1| oligoribonuclease orn [Mycobacterium tuberculosis K85]
 gi|289746293|ref|ZP_06505671.1| oligoribonuclease [Mycobacterium tuberculosis 02_1987]
 gi|289751120|ref|ZP_06510498.1| oligoribonuclease orn [Mycobacterium tuberculosis T92]
 gi|289754620|ref|ZP_06513998.1| oligoribonuclease orn [Mycobacterium tuberculosis EAS054]
 gi|289758643|ref|ZP_06518021.1| oligoribonuclease orn [Mycobacterium tuberculosis T85]
 gi|289762679|ref|ZP_06522057.1| oligoribonuclease orn [Mycobacterium tuberculosis GM 1503]
 gi|294994382|ref|ZP_06800073.1| oligoribonuclease [Mycobacterium tuberculosis 210]
 gi|297635119|ref|ZP_06952899.1| oligoribonuclease [Mycobacterium tuberculosis KZN 4207]
 gi|297732110|ref|ZP_06961228.1| oligoribonuclease [Mycobacterium tuberculosis KZN R506]
 gi|298525983|ref|ZP_07013392.1| oligoribonuclease orn [Mycobacterium tuberculosis 94_M4241A]
 gi|306776784|ref|ZP_07415121.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu001]
 gi|306780550|ref|ZP_07418887.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu002]
 gi|306785311|ref|ZP_07423633.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu003]
 gi|306789665|ref|ZP_07427987.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu004]
 gi|306793992|ref|ZP_07432294.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu005]
 gi|306798387|ref|ZP_07436689.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu006]
 gi|306804267|ref|ZP_07440935.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu008]
 gi|306807692|ref|ZP_07444360.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu007]
 gi|306968664|ref|ZP_07481325.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu009]
 gi|306972895|ref|ZP_07485556.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu010]
 gi|307080608|ref|ZP_07489778.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu011]
 gi|307085195|ref|ZP_07494308.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu012]
 gi|313659444|ref|ZP_07816324.1| oligoribonuclease [Mycobacterium tuberculosis KZN V2475]
 gi|54038785|sp|P65598|ORN_MYCBO RecName: Full=Oligoribonuclease
 gi|54041582|sp|P65597|ORN_MYCTU RecName: Full=Oligoribonuclease
 gi|166216268|sp|A1KLK6|ORN_MYCBP RecName: Full=Oligoribonuclease
 gi|166216271|sp|A5U5K8|ORN_MYCTA RecName: Full=Oligoribonuclease
 gi|3261780|emb|CAB08931.1| OLIGORIBONUCLEASE ORN [Mycobacterium tuberculosis H37Rv]
 gi|13882317|gb|AAK46890.1| oligoribonuclease, putative [Mycobacterium tuberculosis CDC1551]
 gi|31619284|emb|CAD97400.1| PROBABLE OLIGORIBONUCLEASE ORN [Mycobacterium bovis AF2122/97]
 gi|121494041|emb|CAL72519.1| Probable oligoribonuclease orn [Mycobacterium bovis BCG str.
          Pasteur 1173P2]
 gi|124601699|gb|EAY60709.1| oligoribonuclease orn [Mycobacterium tuberculosis C]
 gi|134152323|gb|EBA44368.1| oligoribonuclease orn [Mycobacterium tuberculosis str. Haarlem]
 gi|148506499|gb|ABQ74308.1| oligoribonuclease [Mycobacterium tuberculosis H37Ra]
 gi|148722235|gb|ABR06860.1| oligoribonuclease orn [Mycobacterium tuberculosis F11]
 gi|224774000|dbj|BAH26806.1| oligoribonuclease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319912|gb|ACT24515.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 1435]
 gi|289416961|gb|EFD14201.1| oligoribonuclease orn [Mycobacterium tuberculosis T46]
 gi|289421114|gb|EFD18315.1| oligoribonuclease orn [Mycobacterium tuberculosis CPHL_A]
 gi|289438329|gb|EFD20822.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 605]
 gi|289539647|gb|EFD44225.1| oligoribonuclease orn [Mycobacterium tuberculosis K85]
 gi|289544425|gb|EFD48073.1| oligoribonuclease orn [Mycobacterium tuberculosis T17]
 gi|289686821|gb|EFD54309.1| oligoribonuclease [Mycobacterium tuberculosis 02_1987]
 gi|289691707|gb|EFD59136.1| oligoribonuclease orn [Mycobacterium tuberculosis T92]
 gi|289695207|gb|EFD62636.1| oligoribonuclease orn [Mycobacterium tuberculosis EAS054]
 gi|289710185|gb|EFD74201.1| oligoribonuclease orn [Mycobacterium tuberculosis GM 1503]
 gi|289714207|gb|EFD78219.1| oligoribonuclease orn [Mycobacterium tuberculosis T85]
 gi|298495777|gb|EFI31071.1| oligoribonuclease orn [Mycobacterium tuberculosis 94_M4241A]
 gi|308214844|gb|EFO74243.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu001]
 gi|308326616|gb|EFP15467.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu002]
 gi|308330038|gb|EFP18889.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu003]
 gi|308333882|gb|EFP22733.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu004]
 gi|308337682|gb|EFP26533.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu005]
 gi|308341363|gb|EFP30214.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu006]
 gi|308345880|gb|EFP34731.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu007]
 gi|308349155|gb|EFP38006.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu008]
 gi|308353779|gb|EFP42630.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu009]
 gi|308357722|gb|EFP46573.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu010]
 gi|308361662|gb|EFP50513.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu011]
 gi|308365253|gb|EFP54104.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu012]
 gi|323718919|gb|EGB28073.1| oligoribonuclease orn [Mycobacterium tuberculosis CDC1551A]
 gi|326904125|gb|EGE51058.1| oligoribonuclease orn [Mycobacterium tuberculosis W-148]
 gi|328458177|gb|AEB03600.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 4207]
          Length = 215

 Score = 36.8 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D E TGLD  +D++IEI A+
Sbjct: 8  IDCEMTGLDLGSDKLIEIAAL 28


>gi|302529267|ref|ZP_07281609.1| oligoribonuclease [Streptomyces sp. AA4]
 gi|302438162|gb|EFL09978.1| oligoribonuclease [Streptomyces sp. AA4]
          Length = 202

 Score = 36.8 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D E TGLD   D +IEI A+
Sbjct: 8  IDCEMTGLDLGKDALIEIAAL 28


>gi|318606038|emb|CBY27536.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 220

 Score = 36.8 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 73/190 (38%), Gaps = 20/190 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET GL      I+EI +++++D + +       + P+ R  S +A+ +H IT
Sbjct: 1   MYFRVIDTETCGL---EGGIVEIASIDVMDGALS-NPMSDLVSPD-RPISLDAMVIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++ KP  +    ++       +  ++AHNA FD G +               + I T
Sbjct: 56  EEMVEGKPRIAVAVRKYQ-----GSPYYVAHNAPFDRGVLPE----------MGGQWICT 100

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +AR  +P  ++    L     + +S           +        +        +  +
Sbjct: 101 LKLARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIMRDSGWSAE 160

Query: 187 TNEDRFFKEE 196
              +   + +
Sbjct: 161 QMAEITRQPQ 170


>gi|289426608|ref|ZP_06428341.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|289160196|gb|EFD08367.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|314980623|gb|EFT24717.1| conserved domain protein [Propionibacterium acnes HL072PA2]
 gi|315089857|gb|EFT61833.1| conserved domain protein [Propionibacterium acnes HL072PA1]
 gi|327452668|gb|EGE99322.1| conserved domain protein [Propionibacterium acnes HL087PA3]
          Length = 118

 Score = 36.8 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 3/23 (13%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAV 32
          ++ D ETT LD    RIIEI  +
Sbjct: 17 VILDTETTDLD---GRIIEISII 36


>gi|119611188|gb|EAW90782.1| maelstrom homolog (Drosophila), isoform CRA_c [Homo sapiens]
 gi|315570463|gb|ADU33236.1| maelstrom isoform 3 [Homo sapiens]
          Length = 378

 Score = 36.8 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
            EIG V+          F  F+ P   +             +     P  +         
Sbjct: 81  CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 138

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +    +I  N             R   +      
Sbjct: 139 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 174


>gi|91093385|ref|XP_971552.1| PREDICTED: similar to AGAP012804-PA [Tribolium castaneum]
 gi|270015360|gb|EFA11808.1| hypothetical protein TcasGA2_TC008587 [Tribolium castaneum]
          Length = 211

 Score = 36.8 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
          R +  D+E TGLD   D+I+E+  +                 P+   + P+ +       
Sbjct: 35 RVVWVDMEMTGLDVATDKIMEVACIITDGDLNIIAE-----GPDLIIHHPQNILDKMNEW 89

Query: 68 EFLKD 72
               
Sbjct: 90 CKTHH 94


>gi|302189797|ref|ZP_07266470.1| oligoribonuclease [Pseudomonas syringae pv. syringae 642]
          Length = 178

 Score = 36.8 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +NK   I  D+E TGLD   D IIE+ 
Sbjct: 2  QNKQNLIWIDLEMTGLDPDTDVIIEMA 28


>gi|269469132|gb|EEZ80677.1| oligoribonuclease [uncultured SUP05 cluster bacterium]
          Length = 180

 Score = 36.8 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL  + D IIEI  V
Sbjct: 10 IDLEMTGLIPEKDVIIEIATV 30


>gi|332219427|ref|XP_003258857.1| PREDICTED: protein maelstrom homolog isoform 1 [Nomascus
           leucogenys]
          Length = 434

 Score = 36.8 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
            EIG V+          F  F+ P   +             +     P  +         
Sbjct: 137 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 194

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +    +I  N             R   +      
Sbjct: 195 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 230


>gi|332162002|ref|YP_004298579.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325666232|gb|ADZ42876.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 220

 Score = 36.8 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 73/190 (38%), Gaps = 20/190 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET GL      I+EI +++++D + +       + P+ R  S +A+ +H IT
Sbjct: 1   MYFRVIDTETCGL---EGGIVEIASIDVMDGALS-NPMSDLVSPD-RPISLDAMVIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++ KP  +    ++       +  ++AHNA FD G +               + I T
Sbjct: 56  EEMVEGKPRIAVAVRKYQ-----GSPYYVAHNAPFDRGVLPE----------MGGQWICT 100

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +AR  +P  ++    L     + +S           +        +        +  +
Sbjct: 101 LKLARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIMRDSGWSAE 160

Query: 187 TNEDRFFKEE 196
              +   + +
Sbjct: 161 QMAEITRQPQ 170


>gi|293190188|ref|ZP_06608684.1| putative DNA polymerase III epsilon subunit [Actinomyces
          odontolyticus F0309]
 gi|292821004|gb|EFF79957.1| putative DNA polymerase III epsilon subunit [Actinomyces
          odontolyticus F0309]
          Length = 250

 Score = 36.8 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37
          FD ETTG+ +  DR++    V  +D 
Sbjct: 11 FDTETTGVRALKDRLVTAALVLRIDG 36


>gi|109019354|ref|XP_001087413.1| PREDICTED: protein maelstrom homolog [Macaca mulatta]
 gi|75076632|sp|Q4R786|MAEL_MACFA RecName: Full=Protein maelstrom homolog
 gi|67969368|dbj|BAE01036.1| unnamed protein product [Macaca fascicularis]
          Length = 434

 Score = 36.8 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
            EIG V+          F  F+ P   +             +     P  +         
Sbjct: 137 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 194

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +    +I  N             R   +      
Sbjct: 195 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 230


>gi|257056841|ref|YP_003134673.1| oligoribonuclease (3'->5' exoribonuclease) [Saccharomonospora
          viridis DSM 43017]
 gi|256586713|gb|ACU97846.1| oligoribonuclease (3'->5' exoribonuclease) [Saccharomonospora
          viridis DSM 43017]
          Length = 202

 Score = 36.8 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D E TGLD   D +IEI  +
Sbjct: 4  RLVWIDCEMTGLDLAKDALIEIAVL 28


>gi|70999440|ref|XP_754439.1| RNA exonuclease Rex2 [Aspergillus fumigatus Af293]
 gi|66852076|gb|EAL92401.1| RNA exonuclease Rex2, putative [Aspergillus fumigatus Af293]
 gi|159127455|gb|EDP52570.1| RNA exonuclease Rex2, putative [Aspergillus fumigatus A1163]
          Length = 250

 Score = 36.8 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 2/57 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            D E TGL+ + D I++I                F+  +  +       +       
Sbjct: 73  IDCEMTGLNPETDTILQICCYITDANLNLLDPEGFETIIHHDRSVLDSMSPWCVDTH 129


>gi|330939856|gb|EGH43089.1| oligoribonuclease [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330978958|gb|EGH78017.1| oligoribonuclease [Pseudomonas syringae pv. aptata str. DSM
          50252]
          Length = 178

 Score = 36.8 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +NK   I  D+E TGLD   D IIE+ 
Sbjct: 2  QNKQNLIWIDLEMTGLDPDTDVIIEMA 28


>gi|259908234|ref|YP_002648590.1| exodeoxyribonuclease X [Erwinia pyrifoliae Ep1/96]
 gi|224963856|emb|CAX55358.1| DNA exonuclease X [Erwinia pyrifoliae Ep1/96]
 gi|283478165|emb|CAY74081.1| exodeoxyribonuclease X [Erwinia pyrifoliae DSM 12163]
          Length = 221

 Score = 36.8 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 67/174 (38%), Gaps = 20/174 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V+++            + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGL---QGGVVEVASVDVISGQIL-NPMSDLISPD-RPISRQAMAVHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP+       +       +  ++AHNA FD   +                 I T+++A
Sbjct: 59  RGKPAIEQAIGRYH-----GSPFYVAHNASFDRRMLPE----------MHGDWICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           RR  P  +    +L +   + +S  +   A    +        +M   S   + 
Sbjct: 104 RRLWPGLKYTNEALRQSLQLEVSPPADLHAHRALYDCYVTAALLMRIMSFSGWD 157


>gi|332811144|ref|XP_003308636.1| PREDICTED: protein maelstrom homolog isoform 1 [Pan troglodytes]
          Length = 378

 Score = 36.8 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
            EIG V+          F  F+ P   +             +     P  +         
Sbjct: 81  CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 138

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +    +I  N             R   +      
Sbjct: 139 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 174


>gi|323450230|gb|EGB06112.1| hypothetical protein AURANDRAFT_65802 [Aureococcus anophagefferens]
          Length = 1190

 Score = 36.8 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDE 68
           I +D+ETT        ++++    + +   ++  FQ  + P  G      A+  +     
Sbjct: 44  IAYDLETTSAWPATAEVVQLAFTNVAN---SDEHFQALVLPEGGVDGGAAAVHGYTKASL 100

Query: 69  FLKDKPSFSSIFSEFWDFF 87
             K    F   +    D+ 
Sbjct: 101 KKKRALPFDVAWGMARDWL 119


>gi|255325307|ref|ZP_05366413.1| DNA polymerase III epsilon subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255297872|gb|EET77183.1| DNA polymerase III epsilon subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 443

 Score = 36.8 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDEF 69
             D+ET   +     I +IGAV   +  +T+ R++     P     +   + +HGIT + 
Sbjct: 102 AVDVET--ANDNWGSICQIGAVRFREGQETDSRSWLCTPPPGIEHFADINVSIHGITADD 159

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           +K  P+F  +  E +DF        +AHNA+FD
Sbjct: 160 VKGAPAFVEVSKELFDFLGG--DVLVAHNAQFD 190


>gi|62390951|ref|YP_226353.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326290|emb|CAF20452.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease
           [Corynebacterium glutamicum ATCC 13032]
          Length = 476

 Score = 36.8 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 7/151 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEALKLHGI 65
             + FD+ET   +     I +IG V+ +D  + +        P       +   + +HGI
Sbjct: 123 NFVGFDVET--ANDDWGSICQIGLVKYVDGVEESSE-SWLCTPPESLNFFNEINIGIHGI 179

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E + D+P F+ +  +  +F  +     +AHNA+FD   ++        D  +      
Sbjct: 180 TPEMVADQPRFADLVPKMVEFVGD--LPLVAHNAQFDFTALSRACAASGIDVPEMIYGCS 237

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
                  K     + L ++    G  + +  
Sbjct: 238 LTLARNEKLQVENHKLPTVASHLGFELKNHH 268


>gi|23308895|ref|NP_601316.2| DNA polymerase III epsilon subunit [Corynebacterium glutamicum ATCC
           13032]
 gi|21324886|dbj|BAB99509.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
           [Corynebacterium glutamicum ATCC 13032]
          Length = 381

 Score = 36.8 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 7/151 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEALKLHGI 65
             + FD+ET   +     I +IG V+ +D  + +        P       +   + +HGI
Sbjct: 28  NFVGFDVET--ANDDWGSICQIGLVKYVDGVEESSE-SWLCTPPESLNFFNEINIGIHGI 84

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E + D+P F+ +  +  +F  +     +AHNA+FD   ++        D  +      
Sbjct: 85  TPEMVADQPRFADLVPKMVEFVGD--LPLVAHNAQFDFTALSRACAASGIDVPEMIYGCS 142

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
                  K     + L ++    G  + +  
Sbjct: 143 LTLARNEKLQVENHKLPTVASHLGFELKNHH 173


>gi|300858286|ref|YP_003783269.1| hypothetical protein cpfrc_00868 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|300685740|gb|ADK28662.1| hypothetical protein cpfrc_00868 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|302206006|gb|ADL10348.1| DNA polymerase III subunit epsilon [Corynebacterium
          pseudotuberculosis C231]
 gi|302330559|gb|ADL20753.1| DNA polymerase III subunit epsilon [Corynebacterium
          pseudotuberculosis 1002]
 gi|308276241|gb|ADO26140.1| DNA polymerase III subunit epsilon [Corynebacterium
          pseudotuberculosis I19]
          Length = 232

 Score = 36.8 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELL 35
          FD+ETT  +    RI+    V + 
Sbjct: 19 FDLETTSANPHEARIVSSALVRID 42


>gi|146302457|ref|YP_001197048.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
 gi|146156875|gb|ABQ07729.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
          Length = 181

 Score = 36.8 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 56/176 (31%), Gaps = 6/176 (3%)

Query: 8   RKIVFDIETT---GLDSKN--DRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + I+ D+E T   G+  K   + IIEIG AV      +  +   + + P     SP   +
Sbjct: 6   KIIIIDLEATCWQGVVPKGQQNEIIEIGLAVLDSQTGEITKNKGILIKPQRSTVSPFCTE 65

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  IT + L                    +    A   ++D+  +  + +          
Sbjct: 66  LTTITQDLLDKNGVSFEEAVNLLIDEYNPDLYTWASYGQYDLNMLTKQCKSFGIPYPMGE 125

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             I+       K    R+   +   +        + H  + D+  ++ +    +  
Sbjct: 126 EHINVKEHFAEKFGLKRSTGMNGALQLLNIPLEGTHHRGIDDAKNIAKIMHWCLKN 181


>gi|84387084|ref|ZP_00990106.1| hypothetical protein V12B01_03993 [Vibrio splendidus 12B01]
 gi|84377945|gb|EAP94806.1| hypothetical protein V12B01_03993 [Vibrio splendidus 12B01]
          Length = 176

 Score = 36.8 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 61/184 (33%), Gaps = 22/184 (11%)

Query: 5   NKMRKIVFDIE----------TTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVFLCPNG 52
           N  R + FD+E          TTG       IIEIG   ++L+  +   R  Q ++ P  
Sbjct: 2   NHNRVVCFDLEMCCWSEDGVGTTG------EIIEIGLAEIDLVSGTIVKRA-QYYVKPEK 54

Query: 53  RKNSPEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            + S    +L GIT   ++ +     S+       F      + A      +       +
Sbjct: 55  DEVSLFCAELTGITPRKIEKQGRPLESVIKSMIKNFGGPKKIYAAWGRDDLILHKECIEK 114

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            I     +   I     +  R          +  +          +H   +D++ L+ + 
Sbjct: 115 GIEPPFSEFLNIATLYRVQNRLKEKRIGHRAA--QEAKNIEWEGRQHSGYVDAYNLAKLA 172

Query: 172 IKMM 175
           + M+
Sbjct: 173 LTML 176


>gi|296219054|ref|XP_002755711.1| PREDICTED: hypothetical protein LOC100392350 [Callithrix jacchus]
          Length = 878

 Score = 36.8 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/117 (6%), Positives = 18/117 (15%)

Query: 45  QVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
           Q +  P    +          T       P   +    +       N +   H       
Sbjct: 437 QCYTHPQCNTHPQCYTHPQCYTQPQCYTHPQSYTHLQCYTHPHATPNPQCYTHPQCNTHP 496

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
                 Q   +         +T                    +    +   +     
Sbjct: 497 QCYTHPQCYTQSQSYTHPQCNTHPQCYTHPQCYTQPQCYTHPQSYTHLQCYTHPQCY 553


>gi|169629793|ref|YP_001703442.1| hypothetical protein MAB_2709c [Mycobacterium abscessus ATCC
          19977]
 gi|169241760|emb|CAM62788.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 182

 Score = 36.8 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVE 33
          M  +  D ETTGL  +     EI  + 
Sbjct: 1  MALVFLDTETTGLHRER-EPWEIAIIR 26


>gi|149910187|ref|ZP_01898833.1| Oligoribonuclease [Moritella sp. PE36]
 gi|149806773|gb|EDM66737.1| Oligoribonuclease [Moritella sp. PE36]
          Length = 188

 Score = 36.8 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +   IIEI 
Sbjct: 18 IDLEMTGLDPEKCLIIEIA 36


>gi|14249590|ref|NP_116247.1| protein maelstrom homolog [Homo sapiens]
 gi|74760900|sp|Q96JY0|MAEL_HUMAN RecName: Full=Protein maelstrom homolog
 gi|14042764|dbj|BAB55385.1| unnamed protein product [Homo sapiens]
 gi|20306906|gb|AAH28595.1| Maelstrom homolog (Drosophila) [Homo sapiens]
 gi|55661890|emb|CAH69956.1| maelstrom homolog (Drosophila) [Homo sapiens]
 gi|67866977|gb|AAY82463.1| maelstrom [Homo sapiens]
 gi|119611187|gb|EAW90781.1| maelstrom homolog (Drosophila), isoform CRA_b [Homo sapiens]
 gi|312151748|gb|ADQ32386.1| maelstrom homolog (Drosophila) [synthetic construct]
          Length = 434

 Score = 36.8 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
            EIG V+          F  F+ P   +             +     P  +         
Sbjct: 137 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 194

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +    +I  N             R   +      
Sbjct: 195 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 230


>gi|323497417|ref|ZP_08102435.1| exonuclease I [Vibrio sinaloensis DSM 21326]
 gi|323317500|gb|EGA70493.1| exonuclease I [Vibrio sinaloensis DSM 21326]
          Length = 474

 Score = 36.8 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 44/160 (27%), Gaps = 7/160 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++++     FD ET G     DR  +   V    D++       ++  P         
Sbjct: 1   MQQEHQPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGDPLVIYCQPPSDYLPA-- 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
                         P  +         F  +  E +A     ++G+ +            
Sbjct: 59  ----PEAALITGITPQTAQAQGLSEPEFIAKIHEQLAMPNTINLGYNSIRFDDEVTRYTC 114

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
               ID  + + +   S  + L+ +   Y +         
Sbjct: 115 YRNFIDPYAWSWQNGNSRWDLLDVMRACYALRPEGVEWPE 154


>gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826]
          Length = 878

 Score = 36.8 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 15/18 (83%)

Query: 10  IVFDIETTGLDSKNDRII 27
           + FD ETTG+DSK+ +I+
Sbjct: 318 VAFDTETTGVDSKSAKIV 335


>gi|56707385|ref|YP_169281.1| oligoribonuclease [Francisella tularensis subsp. tularensis SCHU
          S4]
 gi|110669856|ref|YP_666413.1| oligoribonuclease [Francisella tularensis subsp. tularensis
          FSC198]
 gi|224456460|ref|ZP_03664933.1| oligoribonuclease [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|254370915|ref|ZP_04986920.1| oligoribonuclease [Francisella tularensis subsp. tularensis
          FSC033]
 gi|254874223|ref|ZP_05246933.1| oligoribonuclease [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|81820821|sp|Q5NI61|ORN_FRATT RecName: Full=Oligoribonuclease
 gi|123169637|sp|Q14JL3|ORN_FRAT1 RecName: Full=Oligoribonuclease
 gi|56603877|emb|CAG44861.1| Oligoribonuclease [Francisella tularensis subsp. tularensis SCHU
          S4]
 gi|110320189|emb|CAL08244.1| Oligoribonuclease [Francisella tularensis subsp. tularensis
          FSC198]
 gi|151569158|gb|EDN34812.1| oligoribonuclease [Francisella tularensis subsp. tularensis
          FSC033]
 gi|254840222|gb|EET18658.1| oligoribonuclease [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|282158524|gb|ADA77915.1| oligoribonuclease [Francisella tularensis subsp. tularensis
          NE061598]
          Length = 178

 Score = 36.8 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD  + +I EI A+
Sbjct: 10 IDLEMTGLDVDSCKITEIAAI 30


>gi|330873800|gb|EGH07949.1| oligoribonuclease [Pseudomonas syringae pv. morsprunorum str.
          M302280PT]
          Length = 178

 Score = 36.8 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +NK   I  D+E TGLD   D IIE+ 
Sbjct: 2  QNKQNLIWIDLEMTGLDPDTDVIIEMA 28


>gi|319443116|ref|ZP_07992272.1| oligoribonuclease [Corynebacterium variabile DSM 44702]
          Length = 209

 Score = 36.8 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D E TGLD+    ++EI  V
Sbjct: 11 RLVWVDCEMTGLDTSRHVLVEIAVV 35


>gi|49081684|gb|AAT50242.1| PA1575 [synthetic construct]
          Length = 184

 Score = 36.8 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 10/115 (8%)

Query: 9   KIVFDIE-TT--GLDS-KNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRK-NSPEAL 60
            +V D+E TT  G    +   IIEIGA  +            FQ F+ P  R   +    
Sbjct: 4   WLVIDLEATTAEGGWPLEEMEIIEIGATLVAAADAREL--DHFQRFVRPVRRPLLTHFCR 61

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            L  I+   +      ++++  F  +  +         +  D      E +    
Sbjct: 62  DLTHISQANVDGAAHLNTVWEAFERWLAQHRPRLAGWASWGDYDRRQLEQEWRQH 116


>gi|330951466|gb|EGH51726.1| oligoribonuclease [Pseudomonas syringae Cit 7]
          Length = 178

 Score = 36.8 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +NK   I  D+E TGLD   D IIE+ 
Sbjct: 2  QNKQNLIWIDLEMTGLDPDTDVIIEMA 28


>gi|237798271|ref|ZP_04586732.1| oligoribonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021123|gb|EGI01180.1| oligoribonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 178

 Score = 36.8 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +NK   I  D+E TGLD   D IIE+ 
Sbjct: 2  QNKQNLIWIDLEMTGLDPDTDVIIEMA 28


>gi|119611186|gb|EAW90780.1| maelstrom homolog (Drosophila), isoform CRA_a [Homo sapiens]
          Length = 423

 Score = 36.8 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
            EIG V+          F  F+ P   +             +     P  +         
Sbjct: 137 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 194

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +    +I  N             R   +      
Sbjct: 195 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 230


>gi|9630507|ref|NP_046936.1| gp41 [Enterobacteria phage N15]
 gi|3192726|gb|AAC19079.1| gp41 [Enterobacteria phage N15]
          Length = 304

 Score = 36.8 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 28/164 (17%)

Query: 1   MIRKNKMR--KIVFDIETTGL---------DSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           MI    ++   +V D ETTGL            N R    G V L             + 
Sbjct: 11  MIMHKWLKSDYVVIDTETTGLGEYAEIIEIAIINMR----GEVLLD----------TLVK 56

Query: 50  PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           P  +   PE  +++ IT+E +   P++  +F +     ++   +W+A N+ FD   +   
Sbjct: 57  P-TKPIPPEVTEINHITNEMVASAPAWCDVFPKVLAIISK--HKWLAWNSGFDARMLEQT 113

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS 153
                    +   +   +S     H  ++   ++    Y     
Sbjct: 114 CLNTIFLNKNAYYVTAMVSRIHTSHIDAKAVYDTWYGEYDAKHQ 157


>gi|332291323|ref|YP_004429932.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5]
          Length = 949

 Score = 36.8 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIG 30
           NK   + FD ETTGLD     ++ I 
Sbjct: 374 NKQSSVCFDTETTGLDPLVAELVGIA 399


>gi|322781953|gb|EFZ10309.1| hypothetical protein SINV_07054 [Solenopsis invicta]
          Length = 640

 Score = 36.8 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 7/41 (17%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50
           ++ D+ET+G +   D I++I A           +F +++ P
Sbjct: 372 VLLDLETSGFEMNCD-ILQIAA------KYGKNSFDIYVNP 405


>gi|226945876|ref|YP_002800949.1| exonuclease I [Azotobacter vinelandii DJ]
 gi|226720803|gb|ACO79974.1| Exodeoxyribonuclease I [Azotobacter vinelandii DJ]
          Length = 476

 Score = 36.8 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61
          D ETTG++ + DR +++  +   +  ++      ++  P        A  
Sbjct: 9  DYETTGINPRCDRPLQVAGIRTDEALNEIGAPLNLYCRPADDILPHPAAC 58


>gi|332811142|ref|XP_513969.3| PREDICTED: protein maelstrom homolog isoform 2 [Pan troglodytes]
          Length = 434

 Score = 36.8 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
            EIG V+          F  F+ P   +             +     P  +         
Sbjct: 137 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 194

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +    +I  N             R   +      
Sbjct: 195 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 230


>gi|317483561|ref|ZP_07942543.1| hypothetical protein HMPREF0177_01939 [Bifidobacterium sp.
          12_1_47BFAA]
 gi|316914987|gb|EFV36427.1| hypothetical protein HMPREF0177_01939 [Bifidobacterium sp.
          12_1_47BFAA]
          Length = 197

 Score = 36.8 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 13 DIETTGLDSKNDRIIEIG 30
          D+ETTGLD+    I+EIG
Sbjct: 13 DVETTGLDTNKCSILEIG 30


>gi|329767022|ref|ZP_08258550.1| hypothetical protein HMPREF0428_00247 [Gemella haemolysans M341]
 gi|328837747|gb|EGF87372.1| hypothetical protein HMPREF0428_00247 [Gemella haemolysans M341]
          Length = 616

 Score = 36.8 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 75/210 (35%), Gaps = 8/210 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIE T    +   II+  A +L    K   +   ++ P  ++ SP   +L GI ++ L
Sbjct: 7   VVDIELT----EEKEIIQFSATKLDQNFKEIESINYYIKPK-KQVSPFVTELTGINNDML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            +K  F  +  E +DF  E         + +    I  +              +DT+ +A
Sbjct: 62  SEKLYFEDVAKELYDFIKEDILVCHGLPSDYV---ILKKRFHDVGIRYHAKMSLDTVELA 118

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R   P+  +   S         S    H A +D  +  ++  ++    + IN       +
Sbjct: 119 RLFMPTQESYRLSDLSNSLALYSGDGYHNAAIDVQVTVELLKEISKRIANINSNNFKKIE 178

Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
              ++        S   +      +I KE+
Sbjct: 179 VLLEKIDYNTLKFSRYCKRIIRGKKIKKED 208


>gi|329947400|ref|ZP_08294604.1| oligoribonuclease [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328525150|gb|EGF52201.1| oligoribonuclease [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 203

 Score = 36.8 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPN 51
           D E TGLD   D +IE+  V              V + P 
Sbjct: 10 IDCEMTGLDLSADALIEVAVVVTDYELAPLAEGIDVLIKPP 50


>gi|322688631|ref|YP_004208365.1| hypothetical protein BLIF_0443 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320459967|dbj|BAJ70587.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 493

 Score = 36.8 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12  FDIETTGLDSKNDRIIEIG 30
            DIETTG+D   D II++G
Sbjct: 264 IDIETTGIDPARDYIIDVG 282


>gi|322690617|ref|YP_004220187.1| hypothetical protein BLLJ_0426 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320455473|dbj|BAJ66095.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 493

 Score = 36.8 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12  FDIETTGLDSKNDRIIEIG 30
            DIETTG+D   D II++G
Sbjct: 264 IDIETTGIDPARDYIIDVG 282


>gi|312133212|ref|YP_004000551.1| dnaq [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482559|ref|ZP_07941574.1| dnaQ protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|311772413|gb|ADQ01901.1| DnaQ [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915981|gb|EFV37388.1| dnaQ protein [Bifidobacterium sp. 12_1_47BFAA]
          Length = 493

 Score = 36.8 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12  FDIETTGLDSKNDRIIEIG 30
            DIETTG+D   D II++G
Sbjct: 264 IDIETTGIDPARDYIIDVG 282


>gi|296453663|ref|YP_003660806.1| hypothetical protein BLJ_0499 [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183094|gb|ADG99975.1| hypothetical protein BLJ_0499 [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 472

 Score = 36.8 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12  FDIETTGLDSKNDRIIEIG 30
            DIETTG+D   D II++G
Sbjct: 244 IDIETTGIDPARDYIIDVG 262


>gi|227546364|ref|ZP_03976413.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|227213345|gb|EEI81217.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Bifidobacterium longum subsp. infantis ATCC 55813]
          Length = 493

 Score = 36.8 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12  FDIETTGLDSKNDRIIEIG 30
            DIETTG+D   D II++G
Sbjct: 264 IDIETTGIDPARDYIIDVG 282


>gi|239622366|ref|ZP_04665397.1| DNA polymerase III [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239514363|gb|EEQ54230.1| DNA polymerase III [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 493

 Score = 36.8 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12  FDIETTGLDSKNDRIIEIG 30
            DIETTG+D   D II++G
Sbjct: 264 IDIETTGIDPARDYIIDVG 282


>gi|213692888|ref|YP_002323474.1| hypothetical protein Blon_2029 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524349|gb|ACJ53096.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320459063|dbj|BAJ69684.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 492

 Score = 36.8 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12  FDIETTGLDSKNDRIIEIG 30
            DIETTG+D   D II++G
Sbjct: 264 IDIETTGIDPARDYIIDVG 282


>gi|91217110|ref|ZP_01254072.1| hypothetical protein P700755_03918 [Psychroflexus torquis ATCC
           700755]
 gi|91184710|gb|EAS71091.1| hypothetical protein P700755_03918 [Psychroflexus torquis ATCC
           700755]
          Length = 424

 Score = 36.8 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 54/178 (30%), Gaps = 13/178 (7%)

Query: 9   KIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            ++ DIET+GL  K         II+I  V         +   + +  +  K +  +  +
Sbjct: 242 YLIVDIETSGLPQKTANGTNYPEIIQIAWVVTNKKGLVLKKNSIIIETDFIKENNYSSIV 301

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---- 118
           +   +   K          +  +     +   ++HN  FD+  +     ++         
Sbjct: 302 NIDFEVARKVMFPLQHALKKLTEDIKICDYV-VSHNTDFDLSILGHYYTKLYGINPLSRK 360

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGALLDSHLLSDVYIKM 174
                + +     +           L + Y        ++ H A +D       + K+
Sbjct: 361 ATICTMKSTVNYCKIPNKFGYKFPKLSELYNKLFDYEVKNSHNAEIDVLHTLKCFKKL 418


>gi|254480996|ref|ZP_05094242.1| exonuclease superfamily protein [marine gamma proteobacterium
          HTCC2148]
 gi|41582287|gb|AAS07901.1| oligoribonuclease [uncultured marine bacterium 463]
 gi|214038791|gb|EEB79452.1| exonuclease superfamily protein [marine gamma proteobacterium
          HTCC2148]
          Length = 182

 Score = 36.8 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD   D +IEI 
Sbjct: 10 VDLEMTGLDPDEDVVIEIA 28


>gi|23465751|ref|NP_696354.1| hypothetical protein BL1185 [Bifidobacterium longum NCC2705]
 gi|23326437|gb|AAN24990.1| hypothetical protein BL1185 [Bifidobacterium longum NCC2705]
          Length = 493

 Score = 36.8 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12  FDIETTGLDSKNDRIIEIG 30
            DIETTG+D   D II++G
Sbjct: 264 IDIETTGIDPARDYIIDVG 282


>gi|23335363|ref|ZP_00120600.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Bifidobacterium longum DJO10A]
 gi|189439806|ref|YP_001954887.1| DNA polymerase III subunit epsilon [Bifidobacterium longum DJO10A]
 gi|189428241|gb|ACD98389.1| DNA polymerase III epsilon subunit [Bifidobacterium longum DJO10A]
 gi|291517273|emb|CBK70889.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Bifidobacterium longum subsp. longum F8]
          Length = 493

 Score = 36.8 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12  FDIETTGLDSKNDRIIEIG 30
            DIETTG+D   D II++G
Sbjct: 264 IDIETTGIDPARDYIIDVG 282


>gi|327268728|ref|XP_003219148.1| PREDICTED: protein maelstrom homolog [Anolis carolinensis]
          Length = 349

 Score = 36.8 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/99 (8%), Positives = 17/99 (17%), Gaps = 2/99 (2%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
            EIG ++          F  F+ P   +             +     P            
Sbjct: 131 CEIGCIKYSLKKGIIAEFHRFIDPG--EVPRGFRFHCQAAADATHKIPISGLDLPATDRS 188

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                              I  +     +       + +
Sbjct: 189 VLLCELYSFIQPCWGTWPLIYCKSDDHYRVNWCLKHMAE 227


>gi|209883609|ref|YP_002287466.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5]
 gi|209871805|gb|ACI91601.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5]
          Length = 204

 Score = 36.8 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 3/34 (8%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT 43
          +  D ET GL+   DR+     V+L +   T   
Sbjct: 20 VAIDTETLGLNPHRDRLC---VVQLSNGDGTADV 50


>gi|257482419|ref|ZP_05636460.1| oligoribonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289623748|ref|ZP_06456702.1| oligoribonuclease [Pseudomonas syringae pv. aesculi str.
          NCPPB3681]
 gi|289648635|ref|ZP_06479978.1| oligoribonuclease [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330865886|gb|EGH00595.1| oligoribonuclease [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|331009756|gb|EGH89812.1| oligoribonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 178

 Score = 36.8 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +NK   I  D+E TGLD   D IIE+ 
Sbjct: 2  QNKQNLIWIDLEMTGLDPDTDVIIEMA 28


>gi|197120640|ref|YP_002132591.1| hypothetical protein AnaeK_0220 [Anaeromyxobacter sp. K]
 gi|196170489|gb|ACG71462.1| conserved hypothetical protein [Anaeromyxobacter sp. K]
          Length = 172

 Score = 36.8 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 42/171 (24%), Gaps = 5/171 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE---ALKLH 63
           M   V D+E  G       ++  GAV +      +RTF+  + P      PE      + 
Sbjct: 1   MSAYVVDVEADGPIPGKYSMVSFGAVRVEPG--LSRTFRGEVRPISDLWLPEALAISAVT 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                   +     + F  +     +      + N  FD  ++N                
Sbjct: 59  REQHLRFGEPGEVMAAFERWIQETTKGKPVLFSDNLSFDWQWMNWYFHTYLGRNPFGWSG 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                +              L                      L D+ +K+
Sbjct: 119 RRIGDLYCGMVKDGHAQWKHLRPTAHDHDPVNDAKANAGVLLQLVDMGLKL 169


>gi|332669891|ref|YP_004452899.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi
          ATCC 484]
 gi|332338929|gb|AEE45512.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi
          ATCC 484]
          Length = 223

 Score = 36.8 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D E TGLD   D ++E+ AV
Sbjct: 19 RIVWIDCEMTGLDLGADALVEVAAV 43


>gi|241573853|ref|XP_002403219.1| three prime repair exonuclease, putative [Ixodes scapularis]
 gi|215500196|gb|EEC09690.1| three prime repair exonuclease, putative [Ixodes scapularis]
          Length = 192

 Score = 36.8 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 11/67 (16%)

Query: 10 IVFDIETTGLDSKNDR--IIEIGAVELL------DYSKTNRTFQVF---LCPNGRKNSPE 58
          + FD+ETT L     R  I E+  V +           T R        + P        
Sbjct: 11 VFFDLETTSLPRAGQRVGITELALVAVDRAHFEKQAKPTFRVLNKLTLCIRPEVYLEPMA 70

Query: 59 ALKLHGI 65
          A K    
Sbjct: 71 AQKSGMS 77


>gi|152993185|ref|YP_001358906.1| exonuclease [Sulfurovum sp. NBC37-1]
 gi|151425046|dbj|BAF72549.1| exonuclease [Sulfurovum sp. NBC37-1]
          Length = 263

 Score = 36.8 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 2/98 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+E+TG+D KNDR+I++  +++         F      +   N       +       
Sbjct: 7   FVDVESTGVDLKNDRLIQLAFLKVQGDKI--EAFNDLCYTDIEMNDTVVAIHNITNAMLE 64

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
                + +      +  N     +IAH  + DV  +  
Sbjct: 65  DKYWPYETDAFIELEKGNSPANYFIAHGNELDVAMLEH 102


>gi|323491335|ref|ZP_08096520.1| exonuclease I [Vibrio brasiliensis LMG 20546]
 gi|323314461|gb|EGA67540.1| exonuclease I [Vibrio brasiliensis LMG 20546]
          Length = 474

 Score = 36.8 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 31/126 (24%), Gaps = 3/126 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++++     FD ET G     DR  +   V    D++       ++  P         
Sbjct: 1   MQQEHQPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPAPE 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSE--FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             L         +    S         +     N   + +N+      +       N   
Sbjct: 61  AALITGITPQTAESKGLSEPEFIAKIHEQLAMPNTISLGYNSIRFDDEVTRYTCYRNFID 120

Query: 118 LDPSRI 123
                 
Sbjct: 121 PYAWSW 126


>gi|170751505|ref|YP_001757765.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831]
 gi|170658027|gb|ACB27082.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831]
          Length = 207

 Score = 36.8 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 8  RKIVFDIETTGLDSKNDRII 27
          R +  D ET GL+   DR+ 
Sbjct: 21 RAVAIDTETLGLNPHRDRLC 40


>gi|170718052|ref|YP_001785090.1| ribonuclease T [Haemophilus somnus 2336]
 gi|168826181|gb|ACA31552.1| ribonuclease T [Haemophilus somnus 2336]
          Length = 218

 Score = 36.8 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 65/193 (33%), Gaps = 27/193 (13%)

Query: 10  IVFDIETTGLDSKND----------RIIEIGAVELLDYSKT-NRTFQVFLCP-NGRKNSP 57
           ++ D+ET G +++ D          ++         +     +      + P  G   +P
Sbjct: 24  VIIDVETAGFNAQTDALLELAALTLKM-------DENGLLVPDEKCHFHIQPFEGANINP 76

Query: 58  EALKLHGITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           E+LK +GI  +                  +        + Q +  +AHNA FD  F+ A 
Sbjct: 77  ESLKFNGIDIDNPLRGAISENVAMSELFKMVRHGQKKADCQRSVIVAHNATFDQSFVMAA 136

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            +R               +         +  L   C+   I+   +  H AL D+   ++
Sbjct: 137 AERTKIKRNPFHPFSIFDTATLSGFMFGQTVLVKGCQVANISFDGKKAHSALYDAERTAE 196

Query: 170 VYIKMMVGGSQIN 182
           ++  M+    ++ 
Sbjct: 197 LFCYMVNHLKKLG 209


>gi|319408044|emb|CBI81698.1| Ribonuclease D [Bartonella schoenbuchensis R1]
          Length = 206

 Score = 36.4 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 22/59 (37%)

Query: 10 IVFDIETTGLDSKNDR--------------IIEIG--------AVELLDYSKTNRTFQV 46
          I  D ET GL    DR              II+I          V+LL+     + F  
Sbjct: 22 IAVDTETLGLQPYRDRLCVVQLSSGDGTADIIQIAKGQNSAPNLVKLLEDKAITKIFHF 80


>gi|312140266|ref|YP_004007602.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S]
 gi|311889605|emb|CBH48922.1| putative DNA polymerase III epsilon subunit [Rhodococcus equi
          103S]
          Length = 228

 Score = 36.4 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
           FD+ETTG D  + RI+    V +    + +R+    + P 
Sbjct: 11 AFDLETTGRDPLSARIVTGSVVTV--GGEGHRSRNWIVDPG 49


>gi|325676987|ref|ZP_08156658.1| DNA polymerase III subunit epsilon [Rhodococcus equi ATCC 33707]
 gi|325552149|gb|EGD21840.1| DNA polymerase III subunit epsilon [Rhodococcus equi ATCC 33707]
          Length = 228

 Score = 36.4 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
           FD+ETTG D  + RI+    V +    + +R+    + P 
Sbjct: 11 AFDLETTGRDPLSARIVTGSVVTV--GGEGHRSRNWIVDPG 49


>gi|239793055|dbj|BAH72791.1| ACYPI010006 [Acyrthosiphon pisum]
          Length = 340

 Score = 36.4 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 17/172 (9%)

Query: 9   KIVFDIETTGL--DSK--NDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN-SPEALKL 62
            +V DIE T    +       IIE  AV +     K    FQ F+ P+     S   +KL
Sbjct: 95  FVVIDIEATCTENNPADYKFEIIEFPAVLVDAKKRKIIDHFQAFVKPSINPKLSEFCIKL 154

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT + + +  SF    + F  +  E            ++G  +      +   +    
Sbjct: 155 TGITQDQIDNADSFEVCLTRFTKWLEE-----------HELGIKHKFSIVTDGPLIWLRF 203

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +     ++   +P       ++ K +      +    ++  +      ++ M
Sbjct: 204 LYGQCLMSEIPYPKFATKWINIRKVFKAFYFTKQVKYSVPCNLNAMLTFLDM 255


>gi|62263510|gb|AAX78167.1| unknown protein [synthetic construct]
          Length = 213

 Score = 36.4 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD  + +I EI A+
Sbjct: 36 IDLEMTGLDVDSCKITEIAAI 56


>gi|301784011|ref|XP_002927420.1| PREDICTED: protein maelstrom homolog isoform 1 [Ailuropoda
           melanoleuca]
 gi|281348535|gb|EFB24119.1| hypothetical protein PANDA_017187 [Ailuropoda melanoleuca]
          Length = 434

 Score = 36.4 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
            EIG V+          F  F+ P   +             +     P  +         
Sbjct: 137 CEIGCVKYSLQGGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFESGHNQAT 194

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +    +I  N             R   +      
Sbjct: 195 VLQNLYRFIHPNPGNWPPIYCKSDDRARVNWCLRHM 230


>gi|15596772|ref|NP_250266.1| hypothetical protein PA1575 [Pseudomonas aeruginosa PAO1]
 gi|107101007|ref|ZP_01364925.1| hypothetical protein PaerPA_01002037 [Pseudomonas aeruginosa PACS2]
 gi|218892469|ref|YP_002441336.1| putative exonuclease [Pseudomonas aeruginosa LESB58]
 gi|254234675|ref|ZP_04927998.1| hypothetical protein PACG_00543 [Pseudomonas aeruginosa C3719]
 gi|254239923|ref|ZP_04933245.1| hypothetical protein PA2G_00554 [Pseudomonas aeruginosa 2192]
 gi|9947538|gb|AAG04964.1|AE004586_2 hypothetical protein PA1575 [Pseudomonas aeruginosa PAO1]
 gi|126166606|gb|EAZ52117.1| hypothetical protein PACG_00543 [Pseudomonas aeruginosa C3719]
 gi|126193301|gb|EAZ57364.1| hypothetical protein PA2G_00554 [Pseudomonas aeruginosa 2192]
 gi|218772695|emb|CAW28480.1| putative exonuclease [Pseudomonas aeruginosa LESB58]
          Length = 183

 Score = 36.4 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 10/115 (8%)

Query: 9   KIVFDIE-TT--GLDS-KNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRK-NSPEAL 60
            +V D+E TT  G    +   IIEIGA  +            FQ F+ P  R   +    
Sbjct: 4   WLVIDLEATTAEGGWPLEEMEIIEIGATLVAAADAREL--DHFQRFVRPVRRPLLTHFCR 61

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            L  I+   +      ++++  F  +  +         +  D      E +    
Sbjct: 62  DLTHISQANVDGAAHLNTVWEAFERWLAQHRPRLAGWASWGDYDRRQLEQEWRQH 116


>gi|291529682|emb|CBK95268.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Eubacterium rectale M104/1]
          Length = 269

 Score = 36.4 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 4/118 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVE--LLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  +ETTGLD  +D +I I A++    D     +  +  ++  N +  +PE  K+  IT+
Sbjct: 30  ILSVETTGLDKFSDELINIHALKCHFEDKILIEDEEYNRYIR-NTKALTPELEKITKITN 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           EFL DK   S++  +F+++  E       + +        A  +      +     + 
Sbjct: 89  EFLMDKEDLSTVMEDFYNYIGEDANIIGFNTSFLLPMLKYAGFETGWMLDIKDCFDLR 146


>gi|90421943|ref|YP_530313.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18]
 gi|90103957|gb|ABD85994.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18]
          Length = 204

 Score = 36.4 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 3/28 (10%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDY 37
          +  D ET GL+   DR+     V+L + 
Sbjct: 20 VAIDTETMGLNPHRDRLC---VVQLSNG 44


>gi|115522454|ref|YP_779365.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53]
 gi|115516401|gb|ABJ04385.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53]
          Length = 204

 Score = 36.4 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 3/28 (10%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDY 37
          +  D ET GL+   DR+     V+L + 
Sbjct: 20 VAIDTETMGLNPHRDRLC---VVQLSNG 44


>gi|45358454|ref|NP_988011.1| exonuclease [Methanococcus maripaludis S2]
 gi|44921212|emb|CAF30447.1| Exonuclease [Methanococcus maripaludis S2]
          Length = 191

 Score = 36.4 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 3/125 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL      I ++  +   +     + F  +   +    S   +    +   
Sbjct: 2   YVFLDTETTGLHPGQ--IAQLSYLVTDEDLNLKKVFNQYYSVDHMSRSAAKVHGLTVEIL 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                        +     + +++  I HN  FD+ F+ AE +R+  + +   +      
Sbjct: 60  DELSNGMTFEDTVDEVRD-DLEDSVIIGHNISFDIRFLKAEFERLGPEYVPKDKFCTMFH 118

Query: 129 IARRK 133
                
Sbjct: 119 FTPIC 123


>gi|330899885|gb|EGH31304.1| oligoribonuclease [Pseudomonas syringae pv. japonica str.
          M301072PT]
          Length = 178

 Score = 36.4 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +NK   I  D+E TGLD   D IIE+ 
Sbjct: 2  QNKQNLIWIDLEMTGLDPDTDVIIEMA 28


>gi|320321892|gb|EFW77988.1| oligoribonuclease [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331003|gb|EFW86977.1| oligoribonuclease [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330872242|gb|EGH06391.1| oligoribonuclease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 178

 Score = 36.4 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +NK   I  D+E TGLD   D IIE+ 
Sbjct: 2  QNKQNLIWIDLEMTGLDPDTDVIIEMA 28


>gi|296219709|ref|XP_002756006.1| PREDICTED: ERI1 exoribonuclease 2 [Callithrix jacchus]
          Length = 687

 Score = 36.4 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 56/202 (27%), Gaps = 27/202 (13%)

Query: 10  IVFDIETT----GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE  AV L     +    F  ++ P      S   ++L 
Sbjct: 38  IVIDFESTCWNDGKRHHSQEIIEFPAVLLNTSTGQIESEFHAYVQPQEHPILSEFCMELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI    + +        S+F  + ++   +    N  F  G        +N         
Sbjct: 98  GIKQAQVDEGVPLKICLSQFCKWIHKIQQQ---KNIIFAAGVSEPSTSEVNLCAFVTWSD 154

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK-----MMVGG 178
            D                    +     +       + +D      ++ +     +    
Sbjct: 155 WDLGVCLE-------------YECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGAL 201

Query: 179 SQINFGFKTNEDRFFKEEKKTV 200
            ++   F   E     + + T 
Sbjct: 202 QEVGIEFSGREHSGLDDSRNTA 223


>gi|116666689|pdb|1ZBH|A Chain A, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
           3'- Exonuclease
 gi|116666690|pdb|1ZBH|B Chain B, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
           3'- Exonuclease
 gi|116666691|pdb|1ZBH|C Chain C, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
           3'- Exonuclease
 gi|116666692|pdb|1ZBH|D Chain D, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
           3'- Exonuclease
          Length = 299

 Score = 36.4 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 11  VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPN 51
           + D E T   G   +    IIE   V L  ++ +   TFQ ++ P 
Sbjct: 82  IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPE 127


>gi|66043831|ref|YP_233672.1| oligoribonuclease [Pseudomonas syringae pv. syringae B728a]
 gi|75503630|sp|Q4ZYY8|ORN_PSEU2 RecName: Full=Oligoribonuclease
 gi|63254538|gb|AAY35634.1| Exonuclease [Pseudomonas syringae pv. syringae B728a]
 gi|330971545|gb|EGH71611.1| oligoribonuclease [Pseudomonas syringae pv. aceris str.
          M302273PT]
          Length = 178

 Score = 36.4 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +NK   I  D+E TGLD   D IIE+ 
Sbjct: 2  QNKQNLIWIDLEMTGLDPDTDVIIEMA 28


>gi|328554793|gb|AEB25285.1| sporulation inhibitor KapD [Bacillus amyloliquefaciens TA208]
 gi|328913150|gb|AEB64746.1| putative exoribonuclease (3'-5') [Bacillus amyloliquefaciens LL3]
          Length = 232

 Score = 36.4 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 3/148 (2%)

Query: 25  RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSEF 83
            IIE G V+ +D  +   TF  ++ P      +        IT E +    +F+    + 
Sbjct: 55  EIIEAGIVKTVDD-EVAETFSSYIKPKKFPKLTKRCKTFLNITQEDVDGGITFNEFIRKL 113

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNS 143
            +   ++N   +              +      P        +L         +   L  
Sbjct: 114 NELDPDKNCTIVTWGNMDMKVLKQNCMFNHIPFPFKGELRDLSLEYKNFFGDRTLTGLWK 173

Query: 144 LCKRYGITISHRSKHGALLDSHLLSDVY 171
             + YG      + H AL D+     ++
Sbjct: 174 AAEEYGDK-GTGTHHKALDDAMTTHKLF 200


>gi|328463821|gb|EGF35364.1| hypothetical protein AAULH_12021 [Lactobacillus helveticus MTCC
          5463]
          Length = 51

 Score = 36.4 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 14 IETTGLDSKNDRIIEIGA 31
          IETT L+   D+IIEI A
Sbjct: 22 IETTDLNPTRDQIIEIAA 39


>gi|326403860|ref|YP_004283942.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301]
 gi|325050722|dbj|BAJ81060.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301]
          Length = 218

 Score = 36.4 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 10 IVFDIETTGLDSKNDR--IIEIGA 31
          +  D ET GLD + DR  ++++ A
Sbjct: 29 VAVDTETMGLDPRRDRLCLVQLSA 52


>gi|148260666|ref|YP_001234793.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5]
 gi|146402347|gb|ABQ30874.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5]
          Length = 218

 Score = 36.4 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 10 IVFDIETTGLDSKNDR--IIEIGA 31
          +  D ET GLD + DR  ++++ A
Sbjct: 29 VAVDTETMGLDPRRDRLCLVQLSA 52


>gi|320536084|ref|ZP_08036140.1| exonuclease [Treponema phagedenis F0421]
 gi|320147069|gb|EFW38629.1| exonuclease [Treponema phagedenis F0421]
          Length = 190

 Score = 36.4 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 11/117 (9%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLHG 64
           M  I  D ETTGL+ +N    EI  +       T         P         EA K HG
Sbjct: 1   MNTIWCDTETTGLEPENSGAFEIAFIFAGKGKVTCERLFKL-NPLNETILYHEEAAKTHG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAE--------WIAHNAKFDVGFINAELQRI 113
           +++E ++  P    I     +FF +            +  +N  FD   + A   R 
Sbjct: 60  VSEEEIRSFPPAEEIVPNIANFFQQAIHVFGDGEKLTFAGYNCNFDYRHLEALFNRC 116


>gi|307685693|dbj|BAJ20777.1| maelstrom homolog [synthetic construct]
          Length = 434

 Score = 36.4 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
            EIG V+          F  F+ P   +             +     P  +         
Sbjct: 137 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 194

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +    +I  N             R   +      
Sbjct: 195 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 230


>gi|212696208|ref|ZP_03304336.1| hypothetical protein ANHYDRO_00744 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212676837|gb|EEB36444.1| hypothetical protein ANHYDRO_00744 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 238

 Score = 36.4 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44
          + + DIETTGLD   D ++ +G +           +
Sbjct: 17 ECILDIETTGLDPNTDSLVVLGLIYFNKDKFYIDQY 52


>gi|171920539|ref|ZP_02931814.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|185178742|ref|ZP_02964555.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188024282|ref|ZP_02996975.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188024438|ref|ZP_02997092.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188518687|ref|ZP_03004114.1| exonuclease family [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524119|ref|ZP_03004192.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195867468|ref|ZP_03079472.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273258|ref|ZP_03205794.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209554562|ref|YP_002284534.1| hypothetical protein UUR10_0122 [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225550904|ref|ZP_03771853.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225551391|ref|ZP_03772337.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|171903235|gb|EDT49524.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|184209349|gb|EDU06392.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188018731|gb|EDU56771.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188018953|gb|EDU56993.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188997687|gb|EDU66784.1| exonuclease family [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659913|gb|EDX53293.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195660944|gb|EDX54197.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198249778|gb|EDY74558.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209542063|gb|ACI60292.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225379206|gb|EEH01571.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|225380058|gb|EEH02420.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 376

 Score = 36.4 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 71/207 (34%), Gaps = 4/207 (1%)

Query: 10  IVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  DIE T  D+K D RII+     L       R F     P+   NS     L+   + 
Sbjct: 17  VFVDIEAT--DNKGDQRIIQFSGYRLNIKKNKIRRFNKKFNPDQEINSRIKTLLNFNKNF 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              ++           + +N      +     FD+  ++        D            
Sbjct: 75  NNIEQMP-KLDQKWAKEIYNFVKNAIVVTFTDFDIKKMHQLFSHYEFDLEKIIYFDIYKF 133

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             ++ H ++   L SL    GI I     H AL D+ +L ++++ +    ++  +   + 
Sbjct: 134 FEKKLHTNAVPSLFSLGILSGIKIDFFKLHNALYDAFILKEIFLHIRYKTNEELYEMYSY 193

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTR 215
                K    +    +  +++K +  +
Sbjct: 194 YQFLPKIINSSYFITNEQEKNKGIIKK 220


>gi|329663381|ref|NP_001192506.1| ERI1 exoribonuclease 2 [Bos taurus]
 gi|297490163|ref|XP_002698031.1| PREDICTED: ERI1 exoribonuclease family member 2 [Bos taurus]
 gi|296473339|gb|DAA15454.1| ERI1 exoribonuclease family member 2 [Bos taurus]
          Length = 689

 Score = 36.4 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 55/176 (31%), Gaps = 6/176 (3%)

Query: 10  IVFDIETT----GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKN-SPEALKLH 63
           I+ D E+T    G   ++  IIE  AV L     +    F  ++ P      S   ++L 
Sbjct: 38  IIIDFESTCWNDGKRHRSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPILSEFCVELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI    + +        S+F  +  +   +     A        +E++           +
Sbjct: 98  GIKQAQVDEGVPLKICLSQFCKWIQKIQQQKKIIFATTVSDISTSEVKLCAFVTWSDWDL 157

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              L    ++    +    +      +T     +      S  L +V ++ +    
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFYRRKPKGLSGALQEVGMQFLGREH 213


>gi|26554402|ref|NP_758336.1| DNA polymerase III [Mycoplasma penetrans HF-2]
 gi|26454412|dbj|BAC44740.1| probable DNA polymerase III [Mycoplasma penetrans HF-2]
          Length = 357

 Score = 36.4 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 15/170 (8%)

Query: 8   RKIVF-DIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           ++IVF DIE       ND   RI++ GA+++      ++    F  P  +        ++
Sbjct: 8   KEIVFVDIE------ANDKPKRILQFGAIKIKKNGDIDKK-NWFCNPKCKITP----HIY 56

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I    +K      S            N   +     FD  F+N   +RI K  L+ + I
Sbjct: 57  KIVSRNIKKIDKGMSHIRITEKIHKYLNNSVLISYGAFDYNFLNNMCKRIIKKKLNVTYI 116

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                  +         LN L     + ++ +  H A  D+ +L  ++ +
Sbjct: 117 DLQEEWRKISMTKEVWALNKLANFLNVEVNEKELHDAYYDAFVLYQIFCE 166


>gi|297621033|ref|YP_003709170.1| hypothetical protein wcw_0797 [Waddlia chondrophila WSU 86-1044]
 gi|297376334|gb|ADI38164.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
          Length = 195

 Score = 36.4 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIG 30
          M  I  DIETTGLD    + I++ 
Sbjct: 1  MYAIFLDIETTGLDPFIHKPIDLA 24


>gi|256824739|ref|YP_003148699.1| oligoribonuclease (3'->5' exoribonuclease) [Kytococcus
          sedentarius DSM 20547]
 gi|256688132|gb|ACV05934.1| oligoribonuclease (3'->5' exoribonuclease) [Kytococcus
          sedentarius DSM 20547]
          Length = 223

 Score = 36.4 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG 52
          R +  D E TGL+   D ++EI A V   + +      QV + P+ 
Sbjct: 28 RIVWIDCEMTGLEP-TDVLVEIAALVTDFELNVLGEGVQVVIRPDD 72


>gi|162455935|ref|YP_001618302.1| oligoribonuclease [Sorangium cellulosum 'So ce 56']
 gi|161166517|emb|CAN97822.1| oligoribonuclease [Sorangium cellulosum 'So ce 56']
          Length = 187

 Score = 36.4 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +     R +  D+E TGLD  +  I+EI 
Sbjct: 1  MTDRSQRMVWVDLEMTGLDESSCAIVEIA 29


>gi|145296078|ref|YP_001138899.1| hypothetical protein cgR_2000 [Corynebacterium glutamicum R]
 gi|140845998|dbj|BAF54997.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 467

 Score = 36.4 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 7/144 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEALKLHGI 65
             + FD+ET   +     I +IG V+ +D  + +        P       +   + +HGI
Sbjct: 114 NFVGFDVET--ANDDWGSICQIGLVKYVDGVEESSE-SWLCTPPESLNFFNEINIGIHGI 170

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E + D+P F+ +  +  +F  +     +AHNA+FD   ++        D  +      
Sbjct: 171 TPEMVADQPRFADLVPKMVEFVGD--LPLVAHNAQFDFTALSRACAASGIDVPEMIYGCS 228

Query: 126 TLSIARRKHPSSRNDLNSLCKRYG 149
                  K     + L ++    G
Sbjct: 229 LTLARNEKLQVENHKLPTVASHLG 252


>gi|116049519|ref|YP_791677.1| hypothetical protein PA14_44130 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390052|ref|ZP_06879527.1| hypothetical protein PaerPAb_17961 [Pseudomonas aeruginosa PAb1]
 gi|313106587|ref|ZP_07792814.1| putative exonuclease [Pseudomonas aeruginosa 39016]
 gi|115584740|gb|ABJ10755.1| putative exonuclease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310879316|gb|EFQ37910.1| putative exonuclease [Pseudomonas aeruginosa 39016]
          Length = 183

 Score = 36.4 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 10/115 (8%)

Query: 9   KIVFDIE-TT--GLDS-KNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRK-NSPEAL 60
            +V D+E TT  G    +   IIEIGA  +            FQ F+ P  R   +    
Sbjct: 4   WLVIDLEATTAEGGWPLEEMEIIEIGATLVAAADAREL--DHFQRFVRPVRRPLLTHFCR 61

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            L  I+   +       +++  F  +  +         +  D      E +    
Sbjct: 62  DLTHISQANVDGAAHLDTVWEAFERWLAQHRPRLAGWASWGDYDRRQLEQEWRQH 116


>gi|296537397|ref|ZP_06899246.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957]
 gi|296262276|gb|EFH09052.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957]
          Length = 217

 Score = 36.4 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 10 IVFDIETTGLDSKNDR--IIEIGA 31
          +  D ET GLD + DR  ++++ A
Sbjct: 29 VAIDTETMGLDPRRDRLCLVQLSA 52


>gi|296392793|ref|YP_003657677.1| exonuclease RNase T and DNA polymerase III [Segniliparus rotundus
          DSM 44985]
 gi|296179940|gb|ADG96846.1| Exonuclease RNase T and DNA polymerase III [Segniliparus rotundus
          DSM 44985]
          Length = 202

 Score = 36.4 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLD 36
           D E TGL    D++IEI A+    
Sbjct: 11 VDCEMTGLRPGFDQLIEIAALVTDG 35


>gi|237711880|ref|ZP_04542361.1| predicted protein [Bacteroides sp. 9_1_42FAA]
 gi|317474976|ref|ZP_07934245.1| hypothetical protein HMPREF1016_01224 [Bacteroides eggerthii
          1_2_48FAA]
 gi|229454575|gb|EEO60296.1| predicted protein [Bacteroides sp. 9_1_42FAA]
 gi|316908879|gb|EFV30564.1| hypothetical protein HMPREF1016_01224 [Bacteroides eggerthii
          1_2_48FAA]
          Length = 255

 Score = 36.4 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 12 FDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGR 53
           D ET GLD +     +I   AV    +   +R +Q ++ P G+
Sbjct: 15 LDFETGGLDCRECACTQIALQAVRFDTWQVFDR-YQAYIAPYGK 57


>gi|149068096|gb|EDM17648.1| rCG39336, isoform CRA_a [Rattus norvegicus]
 gi|149068097|gb|EDM17649.1| rCG39336, isoform CRA_a [Rattus norvegicus]
 gi|149068098|gb|EDM17650.1| rCG39336, isoform CRA_a [Rattus norvegicus]
          Length = 99

 Score = 36.4 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 10 IVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRK 54
          IV D E+T    G    +  IIE  AV L     +    F  ++ P    
Sbjct: 38 IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHP 87


>gi|118586342|ref|ZP_01543794.1| DNA-dependent DNA polymerase III, epsilon subunit [Oenococcus oeni
           ATCC BAA-1163]
 gi|118433233|gb|EAV39947.1| DNA-dependent DNA polymerase III, epsilon subunit [Oenococcus oeni
           ATCC BAA-1163]
          Length = 177

 Score = 36.4 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 54/153 (35%), Gaps = 5/153 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET    S+    + +G   + D     + +   + P     S    +++G+T
Sbjct: 1   MNFLAMDFET--ASSEPWSAVSLGLTIVRDNQ-IAQNWYSLIKPET-SFSYWNTEINGLT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P F  ++++      +     + HN +FD   +   L+           +   
Sbjct: 57  ADDVLDSPKFPEVWADI-KNLYDDYPVVVGHNIRFDNNVLKQTLKYYGLKTPRYLSLDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
               + +     + L+++    G+ + H     
Sbjct: 116 YLSRKFQPGMVNHKLDTVVSDLGLFLEHHHNAS 148


>gi|77456743|ref|YP_346248.1| oligoribonuclease [Pseudomonas fluorescens Pf0-1]
 gi|123606183|sp|Q3KIZ7|ORN_PSEPF RecName: Full=Oligoribonuclease
 gi|77380746|gb|ABA72259.1| oligoribonuclease [Pseudomonas fluorescens Pf0-1]
          Length = 180

 Score = 36.4 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +ND IIE+ 
Sbjct: 10 IDLEMTGLDPENDVIIEMA 28


>gi|224372220|ref|YP_002606592.1| exonuclease family [Nautilia profundicola AmH]
 gi|223589909|gb|ACM93645.1| exonuclease family [Nautilia profundicola AmH]
          Length = 271

 Score = 36.4 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 58/170 (34%), Gaps = 8/170 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD ETT  D     II    V     S        FL P  +  S EA ++H I  E +
Sbjct: 106 VFDTETT--DIYG-YIISYAVVIQDMQSMDTEEIYDFLNPKAK-ISEEAYEVHKIKQEDI 161

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---ELQRINKDPLDPSRIIDTL 127
           + KP+F+    EF     +     + HN  +D G +       +        P       
Sbjct: 162 EHKPTFAEKKDEFLQ-IFDNLDMVVGHNVLYDFGVLKRELERAEHFPNIIDIPIFDTMYY 220

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           S         +      C  +     + + H AL D  +   V+ +++  
Sbjct: 221 SADVVVLEKKKMPRLEECVAFFFGKQNANYHDALEDVKMTLKVFNRLLQE 270


>gi|292655765|ref|YP_003535662.1| hypothetical protein HVO_1615 [Haloferax volcanii DS2]
 gi|291371980|gb|ADE04207.1| conserved hypothetical protein [Haloferax volcanii DS2]
          Length = 251

 Score = 36.4 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 11  VFDIETTGLDSKNDRIIEI 29
            FDIETTGL  + D +  +
Sbjct: 86  FFDIETTGLSPERDSVTTV 104


>gi|305680783|ref|ZP_07403590.1| oligoribonuclease [Corynebacterium matruchotii ATCC 14266]
 gi|305658988|gb|EFM48488.1| oligoribonuclease [Corynebacterium matruchotii ATCC 14266]
          Length = 209

 Score = 36.4 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD     I+E+ A+
Sbjct: 9  RIVWIDLEMTGLDIHEHTIVEVAAL 33


>gi|150398789|ref|YP_001322556.1| exonuclease RNase T and DNA polymerase III [Methanococcus
          vannielii SB]
 gi|150011492|gb|ABR53944.1| Exonuclease RNase T and DNA polymerase III [Methanococcus
          vannielii SB]
          Length = 189

 Score = 36.4 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  D ETTGL      I ++  +   +     + F  +        S   + 
Sbjct: 2  YVFLDTETTGLHPGQ--IAQLSYLVTDEELNIKKAFNQYYSVEHMSRSAARIH 52


>gi|117928371|ref|YP_872922.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
 gi|117648834|gb|ABK52936.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
          Length = 550

 Score = 36.4 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)

Query: 13  DIETTGLDSKNDRI--IEIGA 31
           DIETTGL+   DRI  +++  
Sbjct: 380 DIETTGLNWYADRICTVQLAC 400


>gi|86156636|ref|YP_463421.1| hypothetical protein Adeh_0207 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773147|gb|ABC79984.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 172

 Score = 36.4 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 41/171 (23%), Gaps = 5/171 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE---ALKLH 63
           M   V D+E  G       ++  GAV +      +RTF+  + P      PE      + 
Sbjct: 1   MSAYVVDVEADGPIPGKYSMVSFGAVRVEPG--LSRTFRGEVRPISDLWLPEALAISGVT 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                   +     + F  +            + N  FD  ++N                
Sbjct: 59  REQHLRFGEPGEVMADFERWIQETTRGKPVLFSDNLSFDWQYVNWYFHTYLGRNPFGWSG 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                +              L                      L D+ +K+
Sbjct: 119 RRIGDLYCGMVKDGHAQWKHLRATAHDHDPVNDAKANAGVLLQLVDMGLKL 169


>gi|330965973|gb|EGH66233.1| oligoribonuclease [Pseudomonas syringae pv. actinidiae str.
          M302091]
          Length = 178

 Score = 36.4 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +NK   I  D+E TGLD   D IIE+ 
Sbjct: 2  QNKQNLIWIDLEMTGLDPDTDVIIEMA 28


>gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae]
          Length = 920

 Score = 36.4 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 69/233 (29%), Gaps = 27/233 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIG-AVE--------LLDYSKTNR------TFQVFLC 49
           N  + +  D ETTGLD+  D II I  A++        L   +K  +       F     
Sbjct: 347 NSKKLVCIDFETTGLDTFKDTIIGISFAIKSNEAFYLDLSGRTKIGKDKCMNLVFDTL-- 404

Query: 50  PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
                   E   +  I      +     +I     + + +        N       ++  
Sbjct: 405 --------EKEDIKVIGHNLKYEYKMMKAIGKSIGNMYFDTMVAAYLINPTRGRYNMDDL 456

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                         +   +         ++ +   C+   +T         LL +H L +
Sbjct: 457 AIAYLSYNTIKYSDLTDNAKKTLLDAPLKDVVEYACEDADVTFRFYECFAPLLKTHNLEE 516

Query: 170 VY--IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           ++  I+M +     +  F        + +  +    SLL++ K        EE
Sbjct: 517 LFFNIEMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIYAEAGEE 569


>gi|71733293|ref|YP_272859.1| oligoribonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298484922|ref|ZP_07003021.1| Oligoribonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB
          3335]
 gi|123638427|sp|Q48P10|ORN_PSE14 RecName: Full=Oligoribonuclease
 gi|71553846|gb|AAZ33057.1| oligoribonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298160609|gb|EFI01631.1| Oligoribonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB
          3335]
 gi|330886590|gb|EGH20251.1| oligoribonuclease [Pseudomonas syringae pv. mori str. 301020]
          Length = 178

 Score = 36.4 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +NK   I  D+E TGLD   D IIE+ 
Sbjct: 2  QNKQNLIWIDLEMTGLDPDTDVIIEMA 28


>gi|116491633|ref|YP_811177.1| DNA polymerase III, epsilon subunit or related 3'-5' exonuclease
           [Oenococcus oeni PSU-1]
 gi|116092358|gb|ABJ57512.1| DNA polymerase III, epsilon subunit-like 3'-5' exonuclease
           [Oenococcus oeni PSU-1]
          Length = 177

 Score = 36.4 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 54/153 (35%), Gaps = 5/153 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET    S+    + +G   + D     + +   + P     S    +++G+T
Sbjct: 1   MNFLAMDFET--ASSEPWSAVSLGLTIVRDNQ-IAQNWYSLIKPET-SFSYWNTEINGLT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P F  ++++      +     + HN +FD   +   L+           +   
Sbjct: 57  ADDVLDSPKFPEVWADI-KNLYDDYPVVVGHNVRFDNNVLKQTLKYYGLKTPRYLSLDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
               + +     + L+++    G+ + H     
Sbjct: 116 SLPRKFQPGMVNHKLDTVVSDLGLFLEHHHNAS 148


>gi|225021633|ref|ZP_03710825.1| hypothetical protein CORMATOL_01658 [Corynebacterium matruchotii
          ATCC 33806]
 gi|224945624|gb|EEG26833.1| hypothetical protein CORMATOL_01658 [Corynebacterium matruchotii
          ATCC 33806]
          Length = 209

 Score = 36.4 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD     I+E+ A+
Sbjct: 9  RIVWIDLEMTGLDIHEHTIVEVAAL 33


>gi|15827135|ref|NP_301398.1| oligoribonuclease [Mycobacterium leprae TN]
 gi|221229613|ref|YP_002503029.1| oligoribonuclease [Mycobacterium leprae Br4923]
 gi|7227905|sp|O07708|ORN_MYCLE RecName: Full=Oligoribonuclease
 gi|2222713|emb|CAB09908.1| hypothetical protein MLCL383.34c [Mycobacterium leprae]
 gi|13092683|emb|CAC29935.1| putative oligoribonuclease [Mycobacterium leprae]
 gi|219932720|emb|CAR70520.1| putative oligoribonuclease [Mycobacterium leprae Br4923]
          Length = 215

 Score = 36.4 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D E TGLD  +D++IEI A+
Sbjct: 8  IDCEMTGLDLGSDQLIEIAAL 28


>gi|296117576|ref|ZP_06836160.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969307|gb|EFG82548.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 467

 Score = 36.4 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN--GRKNSPEALKLHGIT 66
            +  D+ET   +     I +IGAV  +   +T  +      P           + +HGIT
Sbjct: 107 FVAVDVET--ANGNWGSICQIGAVRFVAGEET-ESKVWLCQPPAGIDHFDDINISIHGIT 163

Query: 67  DEFLKDKPSF 76
            + +KD P+F
Sbjct: 164 ADDVKDAPTF 173


>gi|320583877|gb|EFW98090.1| 3'-5' RNA exonuclease [Pichia angusta DL-1]
          Length = 374

 Score = 36.4 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           D E TGLD  ND IIEI A+          +  F+  +  +  + +          
Sbjct: 38 IDCEMTGLDLLNDHIIEICALVTDKHLRLIDDEGFEAVIHYSQERMNQMDEWCRTHH 94


>gi|281201272|gb|EFA75484.1| RNA exonuclease 2 [Polysphondylium pallidum PN500]
          Length = 451

 Score = 36.4 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV 32
           R I  D+E TGLD   D I+E+  +
Sbjct: 274 RLIWVDLEMTGLDITKDHIMEMACI 298


>gi|331005310|ref|ZP_08328699.1| Oligoribonuclease [gamma proteobacterium IMCC1989]
 gi|330420886|gb|EGG95163.1| Oligoribonuclease [gamma proteobacterium IMCC1989]
          Length = 180

 Score = 36.4 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL   +D IIEI 
Sbjct: 10 IDLEMTGLYPNDDVIIEIA 28


>gi|307149737|ref|YP_003890780.1| exonuclease RNase T/DNA polymerase III [Cyanothece sp. PCC 7822]
 gi|306986537|gb|ADN18415.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
          Length = 293

 Score = 36.4 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 3/151 (1%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + D ETTG +  N++++E+GAV   +            +         EA  ++ I    
Sbjct: 9   IIDTETTG-NKDNNQVLEVGAVLYSIPNQCMLSCGSSLI-AVDADTINEAYLINKIDPLA 66

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +  P   + F  +           +AHNA FD   +         D +    + D    
Sbjct: 67  TQICPQQQNYFLNWLQAAYASADVVVAHNANFDKDVVKKLTWAQKWDKIWLCSLKDFELF 126

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
            ++ +        S     GI+ SHR+    
Sbjct: 127 PKQYNGKRDLISLSQFYGIGISCSHRAIDDC 157


>gi|161501966|ref|YP_261869.2| exonuclease I [Pseudomonas fluorescens Pf-5]
          Length = 475

 Score = 36.4 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/114 (8%), Positives = 29/114 (25%), Gaps = 3/114 (2%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETTG++ + DR +++  +      ++ +    ++  P+          +         
Sbjct: 8   DYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITGITPGRL 67

Query: 72  DKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            +             +         + +N       +       N         
Sbjct: 68  AEQGLGEADFMTRVHEQLARPGTCGVGYNTLRFDDEMTRYSLYRNFFDPYAREW 121


>gi|68346412|gb|AAY94018.1| exodeoxyribonuclease I [Pseudomonas fluorescens Pf-5]
          Length = 497

 Score = 36.4 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/114 (8%), Positives = 29/114 (25%), Gaps = 3/114 (2%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETTG++ + DR +++  +      ++ +    ++  P+          +         
Sbjct: 30  DYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITGITPGRL 89

Query: 72  DKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            +             +         + +N       +       N         
Sbjct: 90  AEQGLGEADFMTRVHEQLARPGTCGVGYNTLRFDDEMTRYSLYRNFFDPYAREW 143


>gi|50121555|ref|YP_050722.1| hypothetical protein ECA2630 [Pectobacterium atrosepticum SCRI1043]
 gi|49612081|emb|CAG75531.1| phage-related protein [Pectobacterium atrosepticum SCRI1043]
          Length = 299

 Score = 36.4 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 42/154 (27%), Gaps = 3/154 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M  ++ DIET G + +   I  IGAV       +    F   +       +        I
Sbjct: 1   MNHVMIDIETMGKNPR-APIASIGAVFFNPKTGELGEQFYCRVDFENDMLNGAVTDSGTI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                +   + + + S+         +++              ++   N    D + +  
Sbjct: 60  KWWLRQSPEASAELISDDATPIWGAISQFSDWLTDNAESLKTLKV-WANSPSFDCTILKS 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
                    P +  +   +     +  +  +   
Sbjct: 119 AFERTEIDIPWNYWNERDVRTMKEVGFAIMNMGR 152


>gi|296229906|ref|XP_002760476.1| PREDICTED: protein maelstrom homolog isoform 2 [Callithrix jacchus]
          Length = 403

 Score = 36.4 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 20/96 (20%), Gaps = 2/96 (2%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
            EIG V+          F  F+ P   +             +     P  +         
Sbjct: 106 CEIGCVKYSLQDGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFESGHSQAT 163

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +   ++I  N             R   +      
Sbjct: 164 VLQNLYKFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 199


>gi|21672814|ref|NP_660881.1| oligoribonuclease [Buchnera aphidicola str. Sg (Schizaphis
          graminum)]
 gi|25008877|sp|Q8K909|ORN_BUCAP RecName: Full=Oligoribonuclease
 gi|21623465|gb|AAM68092.1| hypothetical oligoribonuclease [Buchnera aphidicola str. Sg
          (Schizaphis graminum)]
          Length = 184

 Score = 36.4 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGL+S+  RIIEI  V
Sbjct: 11 IDLEMTGLNSEIHRIIEIATV 31


>gi|317026983|ref|XP_003188586.1| RNA exonuclease Rex2 [Aspergillus niger CBS 513.88]
          Length = 188

 Score = 36.4 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 12 FDIETTGLDSKNDRIIEIGA 31
           D E TGLD+  D+I++I  
Sbjct: 13 IDCEMTGLDADTDQILQICC 32


>gi|220915352|ref|YP_002490656.1| hypothetical protein A2cp1_0231 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953206|gb|ACL63590.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 172

 Score = 36.4 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 41/171 (23%), Gaps = 5/171 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE---ALKLH 63
           M   V D+E  G       ++  GAV +      +RTF+  + P      PE      + 
Sbjct: 1   MSAYVVDVEADGPIPGKYSMVSFGAVRVEPG--LSRTFRGEVRPISDLWLPEALAISAVT 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                   +     + F  +     +      + N  FD  ++N                
Sbjct: 59  REQHLRFGEPGEVMAAFERWIQETTKGKPVLFSDNLSFDWQWMNWYFHTYLGRNPFGWSG 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                +              L                      L  + +K+
Sbjct: 119 RRIGDLYCGMVKDGHAQWKHLRPTAHDHDPVNDAKANAGVLLQLVHMGLKL 169


>gi|146284105|ref|YP_001174258.1| oligoribonuclease [Pseudomonas stutzeri A1501]
 gi|166216582|sp|A4VR15|ORN_PSEU5 RecName: Full=Oligoribonuclease
 gi|145572310|gb|ABP81416.1| oligoribonuclease [Pseudomonas stutzeri A1501]
 gi|327482422|gb|AEA85732.1| oligoribonuclease [Pseudomonas stutzeri DSM 4166]
          Length = 180

 Score = 36.4 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD  ND IIE+ 
Sbjct: 10 IDLEMTGLDPDNDVIIEMA 28


>gi|21221244|ref|NP_627023.1| oligoribonuclease [Streptomyces coelicolor A3(2)]
 gi|289771467|ref|ZP_06530845.1| oligoribonuclease [Streptomyces lividans TK24]
 gi|11133768|sp|P57666|ORN_STRCO RecName: Full=Oligoribonuclease
 gi|9588056|dbj|BAB03461.1| oligoribonuclease [Streptomyces coelicolor A3(2)]
 gi|10303264|emb|CAC10102.1| oligoribonuclease [Streptomyces coelicolor A3(2)]
 gi|289701666|gb|EFD69095.1| oligoribonuclease [Streptomyces lividans TK24]
          Length = 200

 Score = 36.4 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGR 53
          R +  D E TGL   +D +IE+ A V   + +       + + P  R
Sbjct: 4  RMVWIDCEMTGLSLSDDALIEVAALVTDSELNILGEGVDIVIRPPER 50


>gi|325918073|ref|ZP_08180231.1| Exodeoxyribonuclease I subunit C [Xanthomonas vesicatoria ATCC
          35937]
 gi|325535696|gb|EGD07534.1| Exodeoxyribonuclease I subunit C [Xanthomonas vesicatoria ATCC
          35937]
          Length = 481

 Score = 36.4 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           + +D+ET G D +  RI +  AV         +     F+ P      
Sbjct: 5  FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIDEPISFFVQPADDLLP 53


>gi|302551620|ref|ZP_07303962.1| oligoribonuclease [Streptomyces viridochromogenes DSM 40736]
 gi|302469238|gb|EFL32331.1| oligoribonuclease [Streptomyces viridochromogenes DSM 40736]
          Length = 200

 Score = 36.4 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGR 53
          R +  D E TGL   +D +IE+ A V   + +       + + P  R
Sbjct: 4  RMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDR 50


>gi|302560513|ref|ZP_07312855.1| oligoribonuclease [Streptomyces griseoflavus Tu4000]
 gi|302478131|gb|EFL41224.1| oligoribonuclease [Streptomyces griseoflavus Tu4000]
          Length = 200

 Score = 36.4 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGR 53
          R +  D E TGL   +D +IE+ A V   + +       + + P  R
Sbjct: 4  RMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDR 50


>gi|55661889|emb|CAH69955.1| maelstrom homolog (Drosophila) [Homo sapiens]
          Length = 316

 Score = 36.4 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
            EIG V+          F  F+ P   +             +     P  +         
Sbjct: 106 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 163

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +    +I  N             R   +      
Sbjct: 164 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 199


>gi|172041073|ref|YP_001800787.1| oligoribonuclease [Corynebacterium urealyticum DSM 7109]
 gi|171852377|emb|CAQ05353.1| putative oligoribonuclease [Corynebacterium urealyticum DSM 7109]
          Length = 209

 Score = 36.4 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 10 IVF-DIETTGLDSKNDRIIEIGAV 32
          IV+ D E TGLD     ++EI  +
Sbjct: 13 IVWADCEMTGLDPDRHVLVEIAVI 36


>gi|145588712|ref|YP_001155309.1| oligoribonuclease [Polynucleobacter necessarius subsp.
          asymbioticus QLW-P1DMWA-1]
 gi|145047118|gb|ABP33745.1| Exonuclease, RNase T and DNA polymerase III [Polynucleobacter
          necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 195

 Score = 36.1 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT 43
           D+E +GL+ + +RI+EI  +    +  T  T
Sbjct: 22 VDMEMSGLNPETERILEIAIIVTDAHLNTIAT 53


>gi|56461400|ref|YP_156681.1| oligoribonuclease [Idiomarina loihiensis L2TR]
 gi|81821669|sp|Q5QVW2|ORN_IDILO RecName: Full=Oligoribonuclease
 gi|56180410|gb|AAV83132.1| Oligoribonuclease (3'->5' exoribonuclease) [Idiomarina loihiensis
          L2TR]
          Length = 183

 Score = 36.1 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 1  MIRKNK-MRKIVFDIETTGLDSKNDRIIEIG 30
          M   NK  R I  D+E TGL+   + IIE+ 
Sbjct: 1  MTEDNKKQRLIWIDLEMTGLEPDENHIIEVA 31


>gi|314927712|gb|EFS91543.1| hypothetical protein HMPREF9607_02279 [Propionibacterium acnes
          HL044PA1]
 gi|314954535|gb|EFS98941.1| hypothetical protein HMPREF9609_02440 [Propionibacterium acnes
          HL027PA1]
          Length = 54

 Score = 36.1 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 3/23 (13%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAV 32
          ++ D ETT LD    RIIEI  +
Sbjct: 17 VILDTETTDLD---GRIIEISII 36


>gi|241889971|ref|ZP_04777269.1| ATP-dependent helicase DinG homolog [Gemella haemolysans ATCC
           10379]
 gi|241863593|gb|EER67977.1| ATP-dependent helicase DinG homolog [Gemella haemolysans ATCC
           10379]
          Length = 616

 Score = 36.1 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 78/215 (36%), Gaps = 8/215 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIE T     +  II+  A +L +  +   +   ++ P  ++ S    +L GI++E L
Sbjct: 7   VVDIELT----DDKEIIQFSATKLDENFREILSINYYIQPK-KQVSTFVTELTGISNEML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP F  +  E +++            + +    I  +              +DT+ ++
Sbjct: 62  HDKPFFEDVAHELYNYIKGDILVCHGLPSDYV---ILKKRFHDVGILYKAKLSLDTVELS 118

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R   PS  +   S         +    H A +D  +   +  ++    S+IN       +
Sbjct: 119 RLFLPSQTSYRLSDLSNSLGLYTGDQYHNAAIDVKVTVKLLKEIARKISKINTDNYKKIE 178

Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
              ++   ++   +   R++        +E   + 
Sbjct: 179 NLLEKIDLSMYKFARFCRNRAKSVEFNSDEFINYQ 213


>gi|194910229|ref|XP_001982095.1| GG12405 [Drosophila erecta]
 gi|190656733|gb|EDV53965.1| GG12405 [Drosophila erecta]
          Length = 184

 Score = 36.1 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 1/56 (1%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEALKLHGITD 67
          D+E TGLD + D+I+E+  +              F +                   
Sbjct: 15 DLEMTGLDIEKDKILEVSCIITDKDLNVKSEATCFAINHPQEVYDTMNDWCMEQHY 70


>gi|296229904|ref|XP_002760475.1| PREDICTED: protein maelstrom homolog isoform 1 [Callithrix jacchus]
          Length = 434

 Score = 36.1 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 20/96 (20%), Gaps = 2/96 (2%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
            EIG V+          F  F+ P   +             +     P  +         
Sbjct: 137 CEIGCVKYSLQDGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFESGHSQAT 194

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +   ++I  N             R   +      
Sbjct: 195 VLQNLYKFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 230


>gi|229076290|ref|ZP_04209255.1| Sporulation inhibitor KapD [Bacillus cereus Rock4-18]
 gi|229099371|ref|ZP_04230301.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-29]
 gi|229105531|ref|ZP_04236165.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-28]
 gi|229118383|ref|ZP_04247737.1| Sporulation inhibitor KapD [Bacillus cereus Rock1-3]
 gi|228664953|gb|EEL20441.1| Sporulation inhibitor KapD [Bacillus cereus Rock1-3]
 gi|228677801|gb|EEL32044.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-28]
 gi|228683995|gb|EEL37943.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-29]
 gi|228706725|gb|EEL58933.1| Sporulation inhibitor KapD [Bacillus cereus Rock4-18]
          Length = 207

 Score = 36.1 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 50/203 (24%), Gaps = 19/203 (9%)

Query: 8   RKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR----K 54
           R +  D E T         G   +   IIE+G V ++   K   T+   + P        
Sbjct: 5   RFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSSHVRPKTFPSLTD 60

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              + L +     +     P      +E+          W   + K              
Sbjct: 61  RCKKFLGIKQEIVDKGISFPELIDKLAEYEKRCKPTIVTWGNMDMKVLKHNCEMSGVAFP 120

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR--YGITISHRSKHGALLDSHLLSDVYI 172
                    ++       ++ +          +   G             +   L +   
Sbjct: 121 FFGQCRDLSLEYKKFFGERNQTGLWKAIEAYGKVGTGKHHCALDDAMTTYNIFKLVEKDK 180

Query: 173 KMMVGGSQINFGFKTNEDRFFKE 195
           + +V  +    G   +  +  K+
Sbjct: 181 EYLVKPAPPTLGELVDFSKVLKK 203


>gi|225572238|ref|ZP_03781102.1| hypothetical protein RUMHYD_00532 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040300|gb|EEG50546.1| hypothetical protein RUMHYD_00532 [Blautia hydrogenotrophica DSM
           10507]
          Length = 334

 Score = 36.1 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 55/215 (25%), Gaps = 6/215 (2%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           ++K + ++ DIETTG   KN ++  IG +   + S     +             E   L 
Sbjct: 24  QSKHKYVLLDIETTGFTPKNSQLYMIGCIHFSENSWIQTQWL------AETFDEEWKILQ 77

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                F  +    +     F   +                       + +       +  
Sbjct: 78  EFLTHFQGNFHFITYNGDRFDLSYLTDKKSQCQCIKALPWQSSLDLYKLLKPYKKMLNFS 137

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                        +R    S  +   I      ++       LL+     ++     ++ 
Sbjct: 138 HMKQRDLENFLGFNRKYDVSGKECVTIYQRFLRENQPEQAEILLNHNRQDLLGLLKILSM 197

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
              T       + +    +    K    L  ++ K
Sbjct: 198 LTYTLPSAGDFQIEDLSTDQQSFKAVLRLPHKLPK 232


>gi|226942895|ref|YP_002797968.1| oligoribonuclease [Azotobacter vinelandii DJ]
 gi|226717822|gb|ACO76993.1| Exonuclease [Azotobacter vinelandii DJ]
          Length = 180

 Score = 36.1 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +N    I  D+E TGL+ + D IIE+ 
Sbjct: 2  QNPQNLIWIDLEMTGLNPERDVIIEMA 28


>gi|293609598|ref|ZP_06691900.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828050|gb|EFF86413.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 234

 Score = 36.1 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 11/45 (24%)

Query: 1  MIRKNKMRKIVFDIETT---GLDSKNDRIIEIGA--VELLDYSKT 40
          MI+   M+ I+ D ET    GL       IEI    +E+     T
Sbjct: 1  MIKGPVMQTIILDTETHTLNGLP------IEIAYAPIEINAGKLT 39


>gi|325926745|ref|ZP_08188053.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Xanthomonas perforans 91-118]
 gi|325542826|gb|EGD14281.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Xanthomonas perforans 91-118]
          Length = 183

 Score = 36.1 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 9/172 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIE +G       ++ IGAV L+D  +T  +F + L P   ++ PEAL + G   E
Sbjct: 7   FVSVDIEASGPIPGEFSLLSIGAV-LVDRPET--SFYLELKPEDTRHDPEALAVTGFEIE 63

Query: 69  FLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            L                         Q   ++  NA FD  F+N    +   +      
Sbjct: 64  ELARNGVEPGAAMRKFGQWLSEFSAPSQRPVFVGLNAAFDWSFVNYYFHKYCGENPFGFT 123

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +D  +       S  +   S      +       H AL D+   ++++ K+
Sbjct: 124 ALDIKAFFMGVVGSRWDQTKSSQMEKLLRPKLTGTHNALEDARYQAELFRKL 175


>gi|225022753|ref|ZP_03711945.1| hypothetical protein CORMATOL_02798 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944474|gb|EEG25683.1| hypothetical protein CORMATOL_02798 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 232

 Score = 36.1 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 62/207 (29%), Gaps = 3/207 (1%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N ++ + FD+ETT  +    RI+    V +          Q  L   G      A K+HG
Sbjct: 11  NPLKVLSFDLETTSANPFEARIVTSALVHIDSG---GAHPQELLADPGVPIPEAATKVHG 67

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT E+ ++     +          ++          ++  +    L  +    L    + 
Sbjct: 68  ITTEYAREHGRPHADVLAETIATIKKAWADGYTLIVYNASYDLTVLHSLEPGFLITGPVY 127

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           D   + +   P  R             +   + H A  D+   + +  K           
Sbjct: 128 DPYVMDKLLDPYRRGKRTLTALCEEYQVRLENAHEATSDALAAARIAWKQAKKRFASQIS 187

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKP 211
            +T E     +      + +  K+   
Sbjct: 188 PQTMEQLMEFQAVGYYRSQNDFKKYLL 214


>gi|290891242|ref|ZP_06554304.1| hypothetical protein AWRIB429_1694 [Oenococcus oeni AWRIB429]
 gi|290479206|gb|EFD87868.1| hypothetical protein AWRIB429_1694 [Oenococcus oeni AWRIB429]
          Length = 177

 Score = 36.1 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 61/174 (35%), Gaps = 7/174 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET    S+    + +G   + D     + +   + P     S    +++G+T
Sbjct: 1   MNFLAMDFET--ASSEPWSAVSLGLTIVRDNQ-IAQNWYSLIKPET-SFSYWNTEINGLT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P F  ++++      +     + HN +FD   +   L+           +   
Sbjct: 57  ADDVLDSPKFPEVWADI-KNLYDDYPVVVGHNVRFDNNVLKQTLKYYGLKTPRYLSLDTV 115

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
               + +     + L+++    G+       H A  D+   + + I  +    +
Sbjct: 116 SLSRKFQPGMVNHKLDTVVSDLGL--FLEHHHNASDDAQASAQILIYEIEHFGE 167


>gi|255526643|ref|ZP_05393549.1| conserved hypothetical protein [Clostridium carboxidivorans P7]
 gi|296186102|ref|ZP_06854507.1| hypothetical protein CLCAR_1545 [Clostridium carboxidivorans P7]
 gi|255509676|gb|EET86010.1| conserved hypothetical protein [Clostridium carboxidivorans P7]
 gi|296049370|gb|EFG88799.1| hypothetical protein CLCAR_1545 [Clostridium carboxidivorans P7]
          Length = 265

 Score = 36.1 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS 38
          FDIETTG D + DR+I I      D  
Sbjct: 28 FDIETTGFDKEEDRVILISMGRFKDDK 54


>gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
 gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
          Length = 936

 Score = 36.1 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 37/146 (25%), Gaps = 15/146 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD ETTG D+    ++               +F   +        P  +    I    
Sbjct: 365 ICFDTETTGTDANQCELV-------------GLSFS--IKKGEAWYVPVPVNCDEIQPIV 409

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            + KP F +          + +   + +      G +   +        D    +D L+ 
Sbjct: 410 DEFKPIFENPAIGKIGQNIKFDMLVLKYYNVTMQGELFDTMLAHYIIDPDTRHNMDILAE 469

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHR 155
               +           K  G      
Sbjct: 470 NYLGYSPVSITTLIGAKGKGQGTMRD 495


>gi|172058850|ref|YP_001815310.1| exonuclease RNase T and DNA polymerase III [Exiguobacterium
           sibiricum 255-15]
 gi|171991371|gb|ACB62293.1| Exonuclease RNase T and DNA polymerase III [Exiguobacterium
           sibiricum 255-15]
          Length = 190

 Score = 36.1 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 8/176 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             D ET   +  +  I   G  V       T+   QV + P         +++HGI    
Sbjct: 7   AIDFET--ANRNSRSICAFGWSVLSEGRVVTSE--QVLINPE-EDFDAGNIRVHGIRPSD 61

Query: 70  LKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           + D P+              E+    IAHNA FD+G +   +Q+ +   +   +   T+ 
Sbjct: 62  VWDAPALPEAMEAHGLFKLIEKAELVIAHNAAFDMGALQKAVQKYDLYQMPTFQYGCTVK 121

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++R+ +P    + LN++ +   ++  H           LL             +  
Sbjct: 122 LSRKLYPWLPNHKLNTMAEFLNVSFKHHDAKEDAYICALLLQDMFDRTNIEHPVEL 177


>gi|228942073|ref|ZP_04104614.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228975003|ref|ZP_04135563.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981594|ref|ZP_04141890.1| Sporulation inhibitor KapD [Bacillus thuringiensis Bt407]
 gi|228778079|gb|EEM26350.1| Sporulation inhibitor KapD [Bacillus thuringiensis Bt407]
 gi|228784708|gb|EEM32727.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817589|gb|EEM63673.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326942675|gb|AEA18571.1| sporulation inhibitor KapD [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 207

 Score = 36.1 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 48/203 (23%), Gaps = 19/203 (9%)

Query: 8   RKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR----K 54
           R +  D E T         G   +   IIE+G V +        T+   + P        
Sbjct: 5   RFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVAGRK-VEDTYSSHVRPKTFPSLTD 60

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              + L +     +     P      +E+          W   + K              
Sbjct: 61  RCKKFLGIKQEVVDKGISFPELVKKLAEYETKCKPTIVTWGNMDMKVLKHNCEMAGIAFP 120

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR--YGITISHRSKHGALLDSHLLSDVYI 172
                    ++       ++ +          +   G             +   L +   
Sbjct: 121 FFGQCRDLSLEYKKFFGERNQTGLWKAIEAYGKVGTGKHHCALDDAMTTYNIFKLVEKDK 180

Query: 173 KMMVGGSQINFGFKTNEDRFFKE 195
           + +V  +    G   +  +  K+
Sbjct: 181 EYLVKPAPPTLGELVDFSKVLKK 203


>gi|195145416|ref|XP_002013689.1| GL24271 [Drosophila persimilis]
 gi|198452116|ref|XP_001358637.2| GA10162 [Drosophila pseudoobscura pseudoobscura]
 gi|194102632|gb|EDW24675.1| GL24271 [Drosophila persimilis]
 gi|198131794|gb|EAL27778.2| GA10162 [Drosophila pseudoobscura pseudoobscura]
          Length = 187

 Score = 36.1 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 13 DIETTGLDSKNDRIIEIGAV 32
          D+E TGLD   D+I+E+  +
Sbjct: 18 DLEMTGLDVDTDKILEVSCI 37


>gi|294675670|ref|YP_003576285.1| ribonuclease D [Rhodobacter capsulatus SB 1003]
 gi|294474490|gb|ADE83878.1| ribonuclease D-1 [Rhodobacter capsulatus SB 1003]
          Length = 204

 Score = 36.1 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 10 IVFDIETTGLDSKNDRII 27
          +  D ET GLD + DR+ 
Sbjct: 20 VAIDTETMGLDPRRDRLC 37


>gi|260577298|ref|ZP_05845271.1| 3'-5' exonuclease [Rhodobacter sp. SW2]
 gi|259020479|gb|EEW23802.1| 3'-5' exonuclease [Rhodobacter sp. SW2]
          Length = 204

 Score = 36.1 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 10 IVFDIETTGLDSKNDRII 27
          +  D ET GLD + DR+ 
Sbjct: 20 VAIDTETMGLDPRRDRLC 37


>gi|258544438|ref|ZP_05704672.1| oligoribonuclease [Cardiobacterium hominis ATCC 15826]
 gi|258520327|gb|EEV89186.1| oligoribonuclease [Cardiobacterium hominis ATCC 15826]
          Length = 178

 Score = 36.1 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLDS+ D I+EI 
Sbjct: 10 IDLEMTGLDSQRDHILEIA 28


>gi|119385336|ref|YP_916392.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222]
 gi|119375103|gb|ABL70696.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222]
          Length = 204

 Score = 36.1 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 10 IVFDIETTGLDSKNDRII 27
          +  D ET GLD + DR+ 
Sbjct: 20 VAIDTETMGLDPRRDRLC 37


>gi|229169634|ref|ZP_04297336.1| Sporulation inhibitor KapD [Bacillus cereus AH621]
 gi|228613830|gb|EEK70953.1| Sporulation inhibitor KapD [Bacillus cereus AH621]
          Length = 207

 Score = 36.1 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 16/183 (8%)

Query: 8   RKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SP 57
           R +  D E T         G   +   IIE+G V ++   K   T+   + P    + + 
Sbjct: 5   RFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSSHIRPKTFPSLTD 60

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              K  GI  E +    SF  +  +  ++        +           +       + P
Sbjct: 61  RCKKFLGIKQEVVDKGISFHELVEKLAEYEKSCKPTIVTWGNMDMKVLKHNCEMAGVEFP 120

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                   +L   +     ++  L    + YG       KH   LD  + +    K++  
Sbjct: 121 FFGQCRDLSLEYKKFFGERNQTGLWKAIEAYGKA--GTGKHHCALDDAMTTYNIFKLVEK 178

Query: 178 GSQ 180
             +
Sbjct: 179 DKE 181


>gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
 gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
          Length = 920

 Score = 36.1 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIG-AVE 33
           N  + +  D ETTGLD+  D II I  A++
Sbjct: 347 NSKKLVCIDFETTGLDTFKDTIIGISFAIK 376


>gi|171463904|ref|YP_001798017.1| Exonuclease RNase T and DNA polymerase III [Polynucleobacter
          necessarius subsp. necessarius STIR1]
 gi|171193442|gb|ACB44403.1| Exonuclease RNase T and DNA polymerase III [Polynucleobacter
          necessarius subsp. necessarius STIR1]
          Length = 198

 Score = 36.1 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT 43
           D+E +GL+ + +RI+EI  +    +  T  T
Sbjct: 25 VDMEMSGLNPETERILEIAIIVTDAHLNTIAT 56


>gi|145542502|ref|XP_001456938.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424752|emb|CAK89541.1| unnamed protein product [Paramecium tetraurelia]
          Length = 176

 Score = 36.1 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 7/59 (11%)

Query: 15 ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFLKD 72
          E TGL+   D+I+EI  V       T+   +  +  P+   ++   +            
Sbjct: 2  EMTGLNVFQDQILEIACV------LTDFKLETIIKGPHLVIHADNQVLEGMDQWCTKTH 54


>gi|305682188|ref|ZP_07404992.1| exonuclease [Corynebacterium matruchotii ATCC 14266]
 gi|305658661|gb|EFM48164.1| exonuclease [Corynebacterium matruchotii ATCC 14266]
          Length = 230

 Score = 36.1 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 5  NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44
          N ++ + FD+ETT  +    RI+    V +       + F
Sbjct: 9  NPLKVLSFDLETTSANPFEARIVTSALVHIDSGGAHPQEF 48


>gi|188992104|ref|YP_001904114.1| exonuclease I [Xanthomonas campestris pv. campestris str. B100]
 gi|167733864|emb|CAP52070.1| Exodeoxyribonuclease I [Xanthomonas campestris pv. campestris]
          Length = 481

 Score = 36.1 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 3/118 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65
            + +D+ET G D +  RI +  AV               F+ P      +    +     
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
               L++  + +  F+   +         + +N+              N         
Sbjct: 65  PQHALREGVNEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122


>gi|21231005|ref|NP_636922.1| exonuclease I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768990|ref|YP_243752.1| exonuclease I [Xanthomonas campestris pv. campestris str. 8004]
 gi|21112628|gb|AAM40846.1| exodeoxyribonuclease I [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574322|gb|AAY49732.1| exodeoxyribonuclease I [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 481

 Score = 36.1 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 3/118 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65
            + +D+ET G D +  RI +  AV               F+ P      +    +     
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
               L++  + +  F+   +         + +N+              N         
Sbjct: 65  PQHALREGVNEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122


>gi|319441121|ref|ZP_07990277.1| DNA polymerase III subunit epsilon [Corynebacterium variabile DSM
          44702]
          Length = 228

 Score = 36.1 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLD 36
          FD+ETTG D    RI+    + +  
Sbjct: 15 FDLETTGPDPLTARIVTSALITING 39


>gi|289669559|ref|ZP_06490634.1| exonuclease I [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 481

 Score = 36.1 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 33/118 (27%), Gaps = 3/118 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65
            + +D+ET G D +  RI +  AV               F+ P      +    +     
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
               L++  + +  F+   +  +      + +N+              N         
Sbjct: 65  PQHALREGITEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122


>gi|289663122|ref|ZP_06484703.1| exonuclease I [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 481

 Score = 36.1 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 33/118 (27%), Gaps = 3/118 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65
            + +D+ET G D +  RI +  AV               F+ P      +    +     
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
               L++  + +  F+   +  +      + +N+              N         
Sbjct: 65  PQHALREGITEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122


>gi|256545132|ref|ZP_05472498.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC
          51170]
 gi|256399173|gb|EEU12784.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC
          51170]
          Length = 305

 Score = 36.1 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQ 45
          + + DIETTGLD K D+++ +G +      +    ++ F 
Sbjct: 17 ECILDIETTGLDPKIDKLVVLGLIYFDYKKNKFYIDQYFS 56


>gi|302521659|ref|ZP_07274001.1| oligoribonuclease [Streptomyces sp. SPB78]
 gi|318057630|ref|ZP_07976353.1| oligoribonuclease [Streptomyces sp. SA3_actG]
 gi|318077542|ref|ZP_07984874.1| oligoribonuclease [Streptomyces sp. SA3_actF]
 gi|333024701|ref|ZP_08452765.1| putative oligoribonuclease [Streptomyces sp. Tu6071]
 gi|302430554|gb|EFL02370.1| oligoribonuclease [Streptomyces sp. SPB78]
 gi|332744553|gb|EGJ74994.1| putative oligoribonuclease [Streptomyces sp. Tu6071]
          Length = 198

 Score = 36.1 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGR 53
          R +  D E TGL   ND +IE+ A V   + +       + + P  +
Sbjct: 4  RMVWIDCEMTGLSLANDALIEVAALVTDSELNILGDGVDIVIRPPEQ 50


>gi|219882682|ref|YP_002477846.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
          chlorophenolicus A6]
 gi|219861688|gb|ACL42029.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
          chlorophenolicus A6]
          Length = 197

 Score = 36.1 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 9  KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           +  D E   L ++K+  I +IG V++ D           + P G++N
Sbjct: 7  FVAIDFE---LANAKHSSICQIGLVKVRDGVLGKTHTHFVMPPAGQQN 51


>gi|167625547|ref|YP_001675841.1| oligoribonuclease [Shewanella halifaxensis HAW-EB4]
 gi|167355569|gb|ABZ78182.1| Exonuclease RNase T and DNA polymerase III [Shewanella
          halifaxensis HAW-EB4]
          Length = 181

 Score = 36.1 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD   D+IIE+ 
Sbjct: 11 VDLEMTGLDPAVDKIIEMA 29


>gi|268578587|ref|XP_002644276.1| Hypothetical protein CBG14047 [Caenorhabditis briggsae]
          Length = 292

 Score = 36.1 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 37/132 (28%), Gaps = 7/132 (5%)

Query: 8   RKIVFDIETTGLDSKND---RIIEIGAVELL---DYSKTNRTFQVFLCPNGRKN-SPEAL 60
           R I+ D ETT     +D    +I+   V              F  F+ P      S    
Sbjct: 4   RVIILDFETTSEGETHDYPFEVIQFSVVPYDVKAKTILEGHAFNKFVRPVVNPVLSKHCT 63

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +  GI  E L    +F  ++ +F  +  +   +        D       + +     +  
Sbjct: 64  EFTGIKQESLNAADTFLVVYKQFLKWLQKNGFQERHFAIVSDSRQDMWRIAQYQFRLVQE 123

Query: 121 SRIIDTLSIARR 132
           +           
Sbjct: 124 TMPSMFRQWINI 135


>gi|297242761|ref|ZP_06926699.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis AMD]
 gi|296888972|gb|EFH27706.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis AMD]
          Length = 261

 Score = 36.1 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 9/110 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           FD ETTG +   D I+    V    EL        T+   + P+   N   +       +
Sbjct: 34  FDTETTGANIGKDAIVSATLVLRNPELAHAGDVVSTW--LINPHQPMNPKASEVNGFTDE 91

Query: 68  EFLKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRIN 114
              +                     +N   +A+NA FD+  +  +L+R +
Sbjct: 92  YLQEHGGEPEEELEFLARAVSIAQAKNIPLLAYNAPFDIAMLRHDLKRWH 141


>gi|219109276|pdb|3CG7|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
 gi|219109277|pdb|3CG7|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
 gi|219109290|pdb|3CM5|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
           Bound With Mn
 gi|219109291|pdb|3CM5|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
           Bound With Mn
 gi|219109292|pdb|3CM6|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
           Bound With Er
 gi|219109293|pdb|3CM6|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
           Bound With Er
          Length = 308

 Score = 36.1 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 54/187 (28%), Gaps = 13/187 (6%)

Query: 11  VFDIETTGLDSKND---RIIEIGAVELL---DYSKTNRTFQVFLCPN-GRKNSPEALKLH 63
           + D ETT   +  D    +I+   V      D  + + +F  ++ P   R  +   +   
Sbjct: 23  ILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFT 82

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINKDPL 118
           GI    +    +F  ++ +F  +            ++  + +        +++  N    
Sbjct: 83  GIPQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMP 142

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
               + I+   I   +         S     G    +            + D      + 
Sbjct: 143 AFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATIL 202

Query: 178 GSQINFG 184
              IN G
Sbjct: 203 QRMINMG 209


>gi|95116636|ref|NP_041148.2| ORF57 [Ictalurid herpesvirus 1]
 gi|114152802|sp|P28859|DPOL_ICHVA RecName: Full=DNA polymerase
 gi|94449347|gb|AAA88160.2| ORF57 [Ictalurid herpesvirus 1]
          Length = 1512

 Score = 36.1 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 54/179 (30%), Gaps = 20/179 (11%)

Query: 17  TGLDS--------KNDRIIEIGAVELLDYSKTN---RTFQVFLCPNGRKNSPEALKLHGI 65
           TGL          K   I+ I  V + +Y KT    + + V+      +N  E + +  +
Sbjct: 251 TGLPPSPFVGITQKLHEIVSISLV-VCNYHKTGPKKKEYYVYYNTKKMENPMEMIPVEHL 309

Query: 66  T----DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
                    +   +   +   F +   +       +NA+FD+  I   L+        P 
Sbjct: 310 HLDASRIKFEACKNEFYMLLAFINRLRKSVNVLYVYNAQFDIQVIQQRLRYYAFKQRAPR 369

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                  I      +      +             K   L+   +L   Y+K++ G   
Sbjct: 370 CCKGHDDIPHEWGKALMEKWEAFLSVKPQLF----KAQILMGQDILKANYLKLLEGIGS 424


>gi|27904991|ref|NP_778117.1| oligoribonuclease [Buchnera aphidicola str. Bp (Baizongia
          pistaciae)]
 gi|46396112|sp|Q89A34|ORN_BUCBP RecName: Full=Oligoribonuclease
 gi|27904389|gb|AAO27222.1| oligoribonuclease [Buchnera aphidicola str. Bp (Baizongia
          pistaciae)]
          Length = 160

 Score = 36.1 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+    +IIEI 
Sbjct: 11 IDLEMTGLNPNIHKIIEIA 29


>gi|188576332|ref|YP_001913261.1| exonuclease I [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520784|gb|ACD58729.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 481

 Score = 36.1 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 33/118 (27%), Gaps = 3/118 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65
            + +D+ET G D +  RI +  AV               F+ P      +    +     
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
               L++  + +  F+   +  +      + +N+              N         
Sbjct: 65  PQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122


>gi|166711560|ref|ZP_02242767.1| exonuclease I [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 481

 Score = 36.1 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 33/118 (27%), Gaps = 3/118 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65
            + +D+ET G D +  RI +  AV               F+ P      +    +     
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
               L++  + +  F+   +  +      + +N+              N         
Sbjct: 65  PQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122


>gi|266706193|gb|ACY78400.1| OrnA [Streptomyces chattanoogensis]
          Length = 206

 Score = 36.1 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPN 51
          R +  D E TGL   ND +IE+ A V   + +       V + P 
Sbjct: 4  RMVWIDCEMTGLSLANDALIEVAALVTDSELNVLGDGVDVVIRPP 48


>gi|259908733|ref|YP_002649089.1| Endodeoxyribonuclease [Erwinia pyrifoliae Ep1/96]
 gi|224964355|emb|CAX55864.1| Endodeoxyribonuclease [Erwinia pyrifoliae Ep1/96]
 gi|283478705|emb|CAY74621.1| hypothetical protein EPYR_02241 [Erwinia pyrifoliae DSM 12163]
          Length = 189

 Score = 36.1 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 38/140 (27%), Gaps = 3/140 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M  ++ D+ET G       I+ IGAV      S+    F V +          A+     
Sbjct: 1   MNHLMLDLETMGTKPDTP-IVSIGAVFFDPQSSELGEEFYVAVN-LTSAMEQGAIPDGDT 58

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
              +LK  P   +                ++H                N    D   +  
Sbjct: 59  IIWWLKQSPEARAAICSDAALKITDALSELSHFINRHANNTKYLNVWGNGANFDNVIVRG 118

Query: 126 TLSIARRKHPSSRNDLNSLC 145
               A +  P    + + + 
Sbjct: 119 AFERAGQSCPWQFWNDHDVR 138


>gi|167042103|gb|ABZ06837.1| hypothetical protein ALOHA_HF4000ANIW93E5ctg6g5 [uncultured
          marine crenarchaeote HF4000_ANIW93E5]
          Length = 182

 Score = 36.1 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/18 (66%), Positives = 16/18 (88%)

Query: 12 FDIETTGLDSKNDRIIEI 29
          FDIETTG+DS+ D++I I
Sbjct: 16 FDIETTGIDSEKDKVITI 33


>gi|167766365|ref|ZP_02438418.1| hypothetical protein CLOSS21_00869 [Clostridium sp. SS2/1]
 gi|317496793|ref|ZP_07955123.1| hypothetical protein HMPREF0996_00102 [Lachnospiraceae bacterium
          5_1_63FAA]
 gi|167711956|gb|EDS22535.1| hypothetical protein CLOSS21_00869 [Clostridium sp. SS2/1]
 gi|316895805|gb|EFV17957.1| hypothetical protein HMPREF0996_00102 [Lachnospiraceae bacterium
          5_1_63FAA]
          Length = 310

 Score = 36.1 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS 38
          +  N  + + FDIETTGL +    I  IG  ++    
Sbjct: 1  MEHNIQQSLFFDIETTGLSADISAITVIGCCDMDGNV 37


>gi|310817096|ref|YP_003965060.1| 3'-5' exonuclease [Ketogulonicigenium vulgare Y25]
 gi|308755831|gb|ADO43760.1| 3'-5' exonuclease [Ketogulonicigenium vulgare Y25]
          Length = 227

 Score = 36.1 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 21/74 (28%), Gaps = 5/74 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ET GL+   DR+     V++           + + P  R     A  L       
Sbjct: 44  IAIDCETMGLNPHRDRLC---LVQISGG--DGNAHMIQISPGQRSAPNLARMLEDANILK 98

Query: 70  LKDKPSFSSIFSEF 83
           L     F       
Sbjct: 99  LFHYGRFDIAAMYH 112


>gi|289547982|ref|YP_003472970.1| exonuclease RNase T and DNA polymerase III [Thermocrinis albus
          DSM 14484]
 gi|289181599|gb|ADC88843.1| Exonuclease RNase T and DNA polymerase III [Thermocrinis albus
          DSM 14484]
          Length = 208

 Score = 36.1 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLC 49
           +V D ET+  D K   ++ +GA+++++ +    T F V + 
Sbjct: 38 FVVLDTETS--DIKGTNLLSVGALKVVNLTLDLSTAFHVTVK 77


>gi|149190503|ref|ZP_01868773.1| ATP-dependent 26S proteasome regulatory subunit [Vibrio shilonii
          AK1]
 gi|148835627|gb|EDL52594.1| ATP-dependent 26S proteasome regulatory subunit [Vibrio shilonii
          AK1]
          Length = 232

 Score = 36.1 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL 35
          +   K + I+ D+ET G +S N  I+ IGAV   
Sbjct: 1  METKKTKHIMIDLETMG-NSSNAAIVSIGAVVFD 33


>gi|49484243|ref|YP_041467.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242372|emb|CAG41084.1| putative exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 310

 Score = 36.1 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 7/172 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET  ++   +   E+ AV L+      + +  ++ P   + + +  K+H I ++ +
Sbjct: 8   VLDFET--MNEHMNSPCEV-AVSLIKDLSIVKVYSSYINPPNNRYNLKNAKIHKIPEDVI 64

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P       +   +  +++   IAHNA FD+  +       +         +D+++I 
Sbjct: 65  LKAPK-YPDIYQEILYLLKESHLIIAHNALFDISVLKNTNNYYDLPVP-NFMYVDSINIF 122

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           R  H  S   L +LC  Y   I     H A  D   LS + I +       +
Sbjct: 123 RSFHAISSFKLENLCSLY--DIDKEKLHSAKFDVLALSKMLISLAKNNKHYS 172


>gi|325928185|ref|ZP_08189394.1| Exodeoxyribonuclease I subunit C [Xanthomonas perforans 91-118]
 gi|325541481|gb|EGD13014.1| Exodeoxyribonuclease I subunit C [Xanthomonas perforans 91-118]
          Length = 481

 Score = 36.1 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 3/118 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65
            + +D+ET G D +  RI +  AV               F+ P      +    +     
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
               L++  + +  F+   +         + +N+              N         
Sbjct: 65  PQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYEREW 122


>gi|291298946|ref|YP_003510224.1| exonuclease RNase T and DNA polymerase III [Stackebrandtia
          nassauensis DSM 44728]
 gi|290568166|gb|ADD41131.1| Exonuclease RNase T and DNA polymerase III [Stackebrandtia
          nassauensis DSM 44728]
          Length = 191

 Score = 36.1 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D E TGLD + D +IEI  +
Sbjct: 3  IDCEMTGLDLQRDALIEIAVL 23


>gi|229592327|ref|YP_002874446.1| exonuclease I [Pseudomonas fluorescens SBW25]
 gi|229364193|emb|CAY51862.1| exodeoxyribonuclease I [Pseudomonas fluorescens SBW25]
          Length = 475

 Score = 36.1 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/196 (10%), Positives = 56/196 (28%), Gaps = 11/196 (5%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETTG++ ++DR +++  +    + ++      ++  P+           H +      
Sbjct: 8   DYETTGINPRSDRPLQVAGIRTDLELNEIGAPVNLYCQPSDDILP------HPVACAITG 61

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P+  +        F  +    +A       G+                   D  +   
Sbjct: 62  ITPAILAEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191
           +   S  + ++ +   Y +            D  +     ++ +   + I+ G   +   
Sbjct: 122 QGGNSRWDLIDVVRTAYALRPEGIE--WPQQDGRVTLK--LERLTEANGIDHGQAHDALS 177

Query: 192 FFKEEKKTVPNISLLK 207
             +        I   +
Sbjct: 178 DVRATIALARRIREKQ 193


>gi|154244026|ref|YP_001414984.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2]
 gi|154158111|gb|ABS65327.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2]
          Length = 206

 Score = 36.1 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 3/28 (10%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDY 37
          +  D ET GL+   DR+     V+L + 
Sbjct: 20 VAIDTETMGLNPFRDRLC---LVQLSNG 44


>gi|21242349|ref|NP_641931.1| exonuclease I [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107784|gb|AAM36467.1| exodeoxyribonuclease I [Xanthomonas axonopodis pv. citri str. 306]
          Length = 481

 Score = 36.1 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 3/118 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65
            + +D+ET G D +  RI +  AV               F+ P      +    +     
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
               L++  + +  F+   +         + +N+              N         
Sbjct: 65  PQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYEREW 122


>gi|78047196|ref|YP_363371.1| exonuclease I [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78035626|emb|CAJ23314.1| exodeoxyribonuclease I [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 481

 Score = 36.1 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 3/118 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65
            + +D+ET G D +  RI +  AV               F+ P      +    +     
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
               L++  + +  F+   +         + +N+              N         
Sbjct: 65  PQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYEREW 122


>gi|150400976|ref|YP_001324742.1| exonuclease RNase T and DNA polymerase III [Methanococcus aeolicus
           Nankai-3]
 gi|150013679|gb|ABR56130.1| Exonuclease RNase T and DNA polymerase III [Methanococcus aeolicus
           Nankai-3]
          Length = 175

 Score = 36.1 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 51/174 (29%), Gaps = 14/174 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE---LLDYSKTNRTFQVF------LCPNGRKNSPEAL 60
           I+ D ET      +  +IE+GA++   +    K    F  +      +     +      
Sbjct: 2   IILDFETNTRKPYD--VIEVGAIKVAFIDGEYKKIDAFHRYYYSKYGINQRALEVHRLTP 59

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +              F          F +     +AHN  F++ ++   +   N      
Sbjct: 60  QKIKNLRGGENYAKYFRQDNEFI--EFCQDCNTLVAHNITFELRYLGDMVTFDNHICTMA 117

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  ++  R        + + C  YGI       H A+ D     +V   M
Sbjct: 118 QNKHIVRAVDIRGGLKPPKLIEA-CNHYGIDFDEEQYHSAIYDVTKTLEVLNCM 170


>gi|307195065|gb|EFN77118.1| hypothetical protein EAI_12370 [Harpegnathos saltator]
          Length = 541

 Score = 35.7 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 7/41 (17%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50
           ++FD+ET+G     D I+++ AV   +       F V++ P
Sbjct: 481 VIFDLETSGRGRNAD-ILQLAAVANDN------VFSVYIEP 514


>gi|255596951|ref|XP_002536656.1| conserved hypothetical protein [Ricinus communis]
 gi|223518960|gb|EEF25726.1| conserved hypothetical protein [Ricinus communis]
          Length = 216

 Score = 35.7 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 35/165 (21%), Gaps = 1/165 (0%)

Query: 8   RKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R + +FD E TG    N  I E+    +   + +   +   + P                
Sbjct: 19  RHVTIFDTEGTGFRGPNFGITEVACFTVAPNATSGVLYGHLINPEETITPQAVKITGITQ 78

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                 +       + F                      I+   +               
Sbjct: 79  AMVSGAELWSLRYAALFKQMAASHWIGGFNSATYDLHAVIDMNAKYGMPFEKFEYSFDVR 138

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               +     SR                 S H A  D+ L  ++ 
Sbjct: 139 TLHHQLAASKSRAGNLVEIAALYGVKPQGSLHRATADTILTVELL 183


>gi|58426647|gb|AAW75684.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 502

 Score = 35.7 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           + +D+ET G D +  RI +  AV               F+ P      
Sbjct: 26 FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLP 74


>gi|84623964|ref|YP_451336.1| exonuclease I [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|161898991|ref|YP_201069.2| exonuclease I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367904|dbj|BAE69062.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae MAFF
          311018]
          Length = 481

 Score = 35.7 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           + +D+ET G D +  RI +  AV               F+ P      
Sbjct: 5  FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLP 53


>gi|309362083|emb|CAP28760.2| CBR-NPP-10 protein [Caenorhabditis briggsae AF16]
          Length = 1684

 Score = 35.7 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/127 (7%), Positives = 25/127 (19%), Gaps = 3/127 (2%)

Query: 43  TFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA---HNA 99
           +F  +L         +              +   +     F  +    +   I     + 
Sbjct: 363 SFSKYLKIFDCLADYKQCFRPTRWYRRKFIRKHSNEYHWWFLVWIKTSHKHGIQLWRQST 422

Query: 100 KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
            +       E            +           H    +   +     G T   +  + 
Sbjct: 423 NYYECIWFHEQHWWWSFRKQCCQARRPFRFNYYWHYWRWSFRLATSSHIGRTFRFKRPNH 482

Query: 160 ALLDSHL 166
           A +   +
Sbjct: 483 AAIKHWI 489


>gi|291559233|emb|CBL38033.1| Predicted 3'-5' exonuclease related to the exonuclease domain of
          PolB [butyrate-producing bacterium SSC/2]
          Length = 310

 Score = 35.7 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS 38
          +  N  + + FDIETTGL +    I  IG  ++    
Sbjct: 1  MEHNIQQSLFFDIETTGLSADISAITVIGCCDMDGNV 37


>gi|221102082|ref|XP_002161173.1| PREDICTED: similar to Oligoribonuclease, mitochondrial [Hydra
          magnipapillata]
          Length = 184

 Score = 35.7 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD   D IIE+  +
Sbjct: 8  RLVWVDLEMTGLDVDKDHIIEMAVL 32


>gi|268578589|ref|XP_002644277.1| C. briggsae CBR-CRN-4 protein [Caenorhabditis briggsae]
 gi|187027645|emb|CAP32715.1| CBR-CRN-4 protein [Caenorhabditis briggsae AF16]
          Length = 298

 Score = 35.7 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 7/129 (5%)

Query: 11  VFDIETTGLDSKND---RIIEIGAVELLDYSKT---NRTFQVFLCPNGRKN-SPEALKLH 63
           + D ETT      D    II+   V L   +KT      F  F+ P      S    +L 
Sbjct: 13  ILDFETTSGGKNRDYPTEIIQFSVVPLDVKAKTMLEGIAFNKFVRPVINPTLSEHCAELT 72

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI  E L    +F  ++ +F ++  +   +        D       + +     +  +  
Sbjct: 73  GIKQESLNSADTFLVVYKQFLEWLQKNGFQERHFAIVSDSRQDMWRIAQYQFRLVRETMP 132

Query: 124 IDTLSIARR 132
                    
Sbjct: 133 SMFRQWINI 141


>gi|265763451|ref|ZP_06092019.1| predicted protein [Bacteroides sp. 2_1_16]
 gi|299145853|ref|ZP_07038921.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Bacteroides sp. 3_1_23]
 gi|263256059|gb|EEZ27405.1| predicted protein [Bacteroides sp. 2_1_16]
 gi|298516344|gb|EFI40225.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Bacteroides sp. 3_1_23]
          Length = 257

 Score = 35.7 bits (80), Expect = 5.4,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 55/188 (29%), Gaps = 12/188 (6%)

Query: 12  FDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH--GITD 67
            D ET GLD ++    +I   AV + D  +T   +  ++ P  ++      K        
Sbjct: 16  LDFETGGLDCQDCACTQIAIHAVRI-DTFETIDRYVKYISPYNKQPDKGVAKRKVLKSKF 74

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI------NKDPLDPS 121
           +   ++P      +  +        E +  + K     +   +++       N  P    
Sbjct: 75  DKDDEQPMKYEEKALTYSAITMDMLESLGMDIKQVAAEVIDFIRKNILSKGRNIKPFLIG 134

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA-LLDSHLLSDVYIKMMVGGSQ 180
           + I       ++       +    K                +D+ +L  + +  + G S 
Sbjct: 135 QNIGFDIGFMQQLMEYGGQMKEFAKLMRGETDFYGHFQPLYIDTIVLGQLALSHLDGMSS 194

Query: 181 INFGFKTN 188
                   
Sbjct: 195 YKLEIMAE 202


>gi|291526285|emb|CBK91872.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Eubacterium rectale DSM 17629]
          Length = 724

 Score = 35.7 bits (80), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 48/161 (29%), Gaps = 17/161 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGLD             + +             P+             + ++ +
Sbjct: 86  VLDVETTGLD-------------VYNDILVGI---CLYNPDLPSF-YVPFNHTDLQNKRV 128

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + + +     +    +    + + I HN KFD   +  +  +   +    + I   +   
Sbjct: 129 EGQMTEEECKAVMLPYLANGSLKCINHNIKFDDKVVTFQWGQRIANVWWDTNIAGWVLNE 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             KH         +    G           +  +++  D++
Sbjct: 189 NEKHRLKPMYNKYILNGEGSDEDFGDLFEGIPCNYIPIDIF 229


>gi|184154831|ref|YP_001843171.1| hypothetical protein LAF_0355 [Lactobacillus fermentum IFO 3956]
 gi|183226175|dbj|BAG26691.1| hypothetical protein [Lactobacillus fermentum IFO 3956]
 gi|299782901|gb|ADJ40899.1| Putative uncharacterized protein [Lactobacillus fermentum CECT
           5716]
          Length = 361

 Score = 35.7 bits (80), Expect = 5.5,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 56/196 (28%), Gaps = 3/196 (1%)

Query: 12  FDIE-TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDEF 69
            D+E  T   ++    +EIG V+  +  K  + F  F+   +   +       +      
Sbjct: 19  LDLEFATHKKTREHLPLEIGVVKYQNGRKVGKQFHRFVYWADAEADDILRGMDYANVTYK 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
              K             F + +      N   D+  +   ++      +D   +      
Sbjct: 79  TYKKQGQWDKIVADLLNFIDFSLPIGGWNVHGDLQVLLEAIKNHGGPLVDEKAVCCFEVD 138

Query: 130 ARRKHPSSRNDLNSLCKRYG-ITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     +  SL      +     + H AL D  L + VY  ++      ++     
Sbjct: 139 ELVSWLGELPNKPSLRGVGRLLGFDVSNMHHALSDVLLTAQVYDYLVALPEIASWKKDPT 198

Query: 189 EDRFFKEEKKTVPNIS 204
             +  KE  +T     
Sbjct: 199 NTKSTKEAGRTKATKK 214


>gi|104780361|ref|YP_606859.1| exonuclease I [Pseudomonas entomophila L48]
 gi|95109348|emb|CAK14048.1| exonuclease I [Pseudomonas entomophila L48]
          Length = 476

 Score = 35.7 bits (80), Expect = 5.5,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALK 61
          D ETTG++ + DR +++  V    D ++      ++  P+       A  
Sbjct: 9  DYETTGINPRCDRPLQMAGVRTDLDLNEIEAPINLYCRPSDDILPHPAAC 58


>gi|213691488|ref|YP_002322074.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213522949|gb|ACJ51696.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320457562|dbj|BAJ68183.1| oligoribonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 216

 Score = 35.7 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 54/203 (26%), Gaps = 4/203 (1%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R I  D E TGLD    D ++E+  V    D +  +      + P+ +        +  +
Sbjct: 16  RLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDFVIKPSQKAVDHMNDFVRNM 75

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                        +  E  +              +     +       +K  LD      
Sbjct: 76  HTRSGLINEWGHGLSLEEAEQKVTDYVLRFTP--EGVRPLLAGNTIGSDKKFLDHYMPDL 133

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
              +  R    S     +      +  +   K+G       + +   ++           
Sbjct: 134 MSHLHYRSVDVSTLKELARRWYPAVYENRPPKNGGHRALADIIESLDELRYYRKAFMAPV 193

Query: 186 KTNEDRFFKEEKKTVPNISLLKR 208
              +D   K     + + S+L +
Sbjct: 194 PGPDDAASKAIAADIVSTSILNK 216


>gi|302388533|ref|YP_003824355.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           saccharolyticum WM1]
 gi|302199161|gb|ADL06732.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           saccharolyticum WM1]
          Length = 330

 Score = 35.7 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 53/182 (29%), Gaps = 16/182 (8%)

Query: 7   MR-KIVFDIE----TTGLD-SKND---RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           M+  IV D+E      G D +       IIEIGAV+L +  +    F+  + P  R    
Sbjct: 1   MKDYIVLDLEWNQSAGGKDEAVEHLPFEIIEIGAVKLNEAMEEVGEFKRLIRP--RIYPE 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              K+  +T    K        F E    F     E         +     +        
Sbjct: 59  LHEKILEVTHMDEKTLIQEGRNFEEAVKDFLTWCGEEAVFCTWGSMDLTELQRNMAYYGI 118

Query: 118 LDPS-----RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L+P              +             +       +  R  H AL D+H    +  
Sbjct: 119 LNPFPKPFLYYDVQKLYSLLYGDGKDRQSLDIAVLEQQVMEDRPFHRALDDAHYTGRILY 178

Query: 173 KM 174
           KM
Sbjct: 179 KM 180


>gi|269102608|ref|ZP_06155305.1| exodeoxyribonuclease I [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162506|gb|EEZ41002.1| exodeoxyribonuclease I [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 473

 Score = 35.7 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 32/128 (25%), Gaps = 3/128 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           MI+KN+      D ET G     DR  +   +    D +       ++  P         
Sbjct: 1   MIKKNEPSLYWIDYETFGASPATDRPCQFAGIRTDMDLNIIGEPLVIYCKPPHDYLPSPE 60

Query: 60  LKLHGITDEFLKDKPSFSSIFS--EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             L         ++   S         +  ++ N   + +N       +       N   
Sbjct: 61  ACLITGITPQEANEKGLSEPEFIARIHEELSKPNTCVVGYNNVRFDDEVTRYTLYRNFYD 120

Query: 118 LDPSRIID 125
                   
Sbjct: 121 PYGWSWQQ 128


>gi|330802757|ref|XP_003289380.1| hypothetical protein DICPUDRAFT_56059 [Dictyostelium purpureum]
 gi|325080536|gb|EGC34087.1| hypothetical protein DICPUDRAFT_56059 [Dictyostelium purpureum]
          Length = 187

 Score = 35.7 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAV 32
          R +  D+E TGLD   D I+E+  +
Sbjct: 13 RIVWVDLEMTGLDITKDCILEMACI 37


>gi|302841163|ref|XP_002952127.1| hypothetical protein VOLCADRAFT_92718 [Volvox carteri f.
           nagariensis]
 gi|300262713|gb|EFJ46918.1| hypothetical protein VOLCADRAFT_92718 [Volvox carteri f.
           nagariensis]
          Length = 1059

 Score = 35.7 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 40/156 (25%), Gaps = 15/156 (9%)

Query: 37  YSKTNRTFQVFLCPNGR----KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA 92
                 TF   + PNGR    +  P    L GIT + L   P    +   F  +  ++  
Sbjct: 7   RQLIGDTFSSLVNPNGRGRPVQMDPRVTSLTGITPDMLLHAPGEPWVALAFLCWLYQRCR 66

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG--- 149
                        +           L     +   S                  R G   
Sbjct: 67  AGGGVRPALVGHNLRVYDSPFLARMLARQGCLVPYSWCMVDSLRLARRWKLWSSRGGGDF 126

Query: 150 --------ITISHRSKHGALLDSHLLSDVYIKMMVG 177
                     I  R +H AL D+ +  DV   M+  
Sbjct: 127 KLQSLRELYNIPRRDEHRALPDALVTVDVLAAMVRH 162


>gi|325971901|ref|YP_004248092.1| exodeoxyribonuclease I [Spirochaeta sp. Buddy]
 gi|324027139|gb|ADY13898.1| Exodeoxyribonuclease I [Spirochaeta sp. Buddy]
          Length = 471

 Score = 35.7 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/172 (10%), Positives = 35/172 (20%), Gaps = 3/172 (1%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D+ET GLDS+ DRI +        + +       ++   +                    
Sbjct: 14  DLETFGLDSRYDRIAQFAGQRTDLNLNPIGEPIVLYCKLSDDYLPDPLSCTITSITPQEV 73

Query: 72  DKPSFSSIF--SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K               F++ N      N               N          +  S 
Sbjct: 74  NKKGICESDLIDRINSEFSKPNTVVAGFNTIRFDDEFIRNALYRNFLDPYKREWDNYCSR 133

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
                                     + +       L     I+ +     +
Sbjct: 134 WDIIDLVRAAYDLRPEGIAWPPRKEETGNPTFRLVALTQANNIEQVGAHDAL 185


>gi|299472868|emb|CBN80437.1| EsV-1-139 [Ectocarpus siliculosus]
          Length = 269

 Score = 35.7 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 49/198 (24%), Gaps = 2/198 (1%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+ETTGLD+  + I+EI  V    D ++ +    V   P+    +  +           
Sbjct: 46  IDMETTGLDTDTNLILEIVMVVTDRDLNEIDSMRLVLHHPHSILLARSSAWCRRKFCHRR 105

Query: 71  K-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +     F +           +   W   +          +  +I        R +     
Sbjct: 106 EGGNGLFEACHFSALSHHEAEYRMWNFFDHYSKDVGGRYDTTQITSSQPFFDRTLGANGT 165

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
                 +SR       +R        +      D   L   +  +            T  
Sbjct: 166 FLGASDASRCRHQQQPRRSNYKKCLLAGSTVYFDRIFLLKYFPCLKTFFHYRVVDVSTPL 225

Query: 190 DRFFKEEKKTVPNISLLK 207
           +   +        +    
Sbjct: 226 EMVRRWRPDVAAKLPRRN 243


>gi|224373300|ref|YP_002607672.1| DNA polymerase III PolC-type [Nautilia profundicola AmH]
 gi|223589694|gb|ACM93430.1| DNA polymerase III PolC-type [Nautilia profundicola AmH]
          Length = 255

 Score = 35.7 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
             V DIE         ++IEIGAV++ +      TF+  +
Sbjct: 66  YCVVDIEVNNSKPNIGQVIEIGAVKIKNLKIV-DTFEFLI 104


>gi|320163436|gb|EFW40335.1| REXO2 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 180

 Score = 35.7 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          R I  D+E TGLD   + IIE+  +        
Sbjct: 7  RMIWVDLEMTGLDVSTETIIEMACIVTDSRGNI 39


>gi|296126676|ref|YP_003633928.1| exonuclease [Brachyspira murdochii DSM 12563]
 gi|296018492|gb|ADG71729.1| exonuclease [Brachyspira murdochii DSM 12563]
          Length = 287

 Score = 35.7 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-----VELLDYSKTNRTFQVFLC 49
           + +  DIETTG+      +  IG      +++  + +    F  ++ 
Sbjct: 88  KIVFLDIETTGIKPSKADVTVIGCYDGKEMKVFVHGRNENEFLDYIK 134


>gi|90022321|ref|YP_528148.1| oligoribonuclease [Saccharophagus degradans 2-40]
 gi|89951921|gb|ABD81936.1| Exonuclease [Saccharophagus degradans 2-40]
          Length = 181

 Score = 35.7 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL    D IIEI 
Sbjct: 11 IDLEMTGLVPDRDVIIEIA 29


>gi|241896984|ref|NP_001155946.1| exoribonuclease 1 [Acyrthosiphon pisum]
          Length = 340

 Score = 35.7 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 17/172 (9%)

Query: 9   KIVFDIETTGL--DSK--NDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN-SPEALKL 62
            +V DIE T    +       IIE  AV +     K    FQ F+ P+     S   +KL
Sbjct: 95  FVVIDIEATCTENNPADYKFEIIEFPAVLVDAKKRKIIDHFQAFVKPSINPKLSEFCIKL 154

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT + + +  SF    + F  +  E            ++G  +      +        
Sbjct: 155 TGITQDQIDNADSFEVCLTRFTKWLEE-----------HELGIKHKFSIVTDGPFDMARF 203

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +     ++   +P       ++ K +      +    ++  +      ++ M
Sbjct: 204 LYGQCLMSEIPYPKFATKWINIRKVFKAFYFTKQVKYSVPCNLNAMLTFLDM 255


>gi|118602911|ref|YP_904126.1| exodeoxyribonuclease I subunit C [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
 gi|118567850|gb|ABL02655.1| Exodeoxyribonuclease I subunit C [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 471

 Score = 35.7 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 30/126 (23%), Gaps = 6/126 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D ET G+  K DRI +   +   +          +  P                      
Sbjct: 8   DYETFGISPKIDRISQFAGIRTDENFNIIDEQMFYCKPTNDCLPSP-----EACFITGIS 62

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                       +F  + +A++   N     G+ +                ID  +   +
Sbjct: 63  PQLCEQKGMIEHEFIKKIHAQFSTSNTCIV-GYNSIRFDDEFTRHTLYRNFIDPYTWHWQ 121

Query: 133 KHPSSR 138
              +  
Sbjct: 122 NGNTRW 127


>gi|15640368|ref|NP_229995.1| oligoribonuclease [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121591589|ref|ZP_01678842.1| oligoribonuclease [Vibrio cholerae 2740-80]
 gi|121730775|ref|ZP_01682865.1| oligoribonuclease [Vibrio cholerae V52]
 gi|147673115|ref|YP_001218609.1| oligoribonuclease [Vibrio cholerae O395]
 gi|227080553|ref|YP_002809104.1| oligoribonuclease [Vibrio cholerae M66-2]
 gi|229506863|ref|ZP_04396371.1| oligoribonuclease [Vibrio cholerae BX 330286]
 gi|229508668|ref|ZP_04398162.1| oligoribonuclease [Vibrio cholerae B33]
 gi|229516050|ref|ZP_04405501.1| oligoribonuclease [Vibrio cholerae RC9]
 gi|229606377|ref|YP_002877025.1| oligoribonuclease [Vibrio cholerae MJ-1236]
 gi|254851651|ref|ZP_05241001.1| oligoribonuclease [Vibrio cholerae MO10]
 gi|255747141|ref|ZP_05421084.1| oligoribonuclease [Vibrio cholera CIRS 101]
 gi|262149017|ref|ZP_06028162.1| oligoribonuclease [Vibrio cholerae INDRE 91/1]
 gi|262166933|ref|ZP_06034653.1| oligoribonuclease [Vibrio cholerae RC27]
 gi|298501303|ref|ZP_07011100.1| oligoribonuclease [Vibrio cholerae MAK 757]
 gi|11133789|sp|Q9KV17|ORN_VIBCH RecName: Full=Oligoribonuclease
 gi|172047716|sp|A5F3M7|ORN_VIBC3 RecName: Full=Oligoribonuclease
 gi|9654757|gb|AAF93514.1| oligoribonuclease [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121546555|gb|EAX56757.1| oligoribonuclease [Vibrio cholerae 2740-80]
 gi|121627652|gb|EAX60322.1| oligoribonuclease [Vibrio cholerae V52]
 gi|146314998|gb|ABQ19537.1| oligoribonuclease [Vibrio cholerae O395]
 gi|227008441|gb|ACP04653.1| oligoribonuclease [Vibrio cholerae M66-2]
 gi|227012197|gb|ACP08407.1| oligoribonuclease [Vibrio cholerae O395]
 gi|229346953|gb|EEO11920.1| oligoribonuclease [Vibrio cholerae RC9]
 gi|229354303|gb|EEO19232.1| oligoribonuclease [Vibrio cholerae B33]
 gi|229355968|gb|EEO20887.1| oligoribonuclease [Vibrio cholerae BX 330286]
 gi|229369032|gb|ACQ59455.1| oligoribonuclease [Vibrio cholerae MJ-1236]
 gi|254847356|gb|EET25770.1| oligoribonuclease [Vibrio cholerae MO10]
 gi|255735190|gb|EET90592.1| oligoribonuclease [Vibrio cholera CIRS 101]
 gi|262024638|gb|EEY43319.1| oligoribonuclease [Vibrio cholerae RC27]
 gi|262031207|gb|EEY49826.1| oligoribonuclease [Vibrio cholerae INDRE 91/1]
 gi|297539994|gb|EFH76058.1| oligoribonuclease [Vibrio cholerae MAK 757]
          Length = 181

 Score = 35.7 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  +IIE+ 
Sbjct: 11 IDLEMTGLDPEMHKIIEMA 29


>gi|240273598|gb|EER37118.1| oligoribonuclease [Ajellomyces capsulatus H143]
          Length = 189

 Score = 35.7 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 12 FDIETTGLDSKNDRIIEIGA 31
           D E TGL+ + D+I++I  
Sbjct: 13 IDCEMTGLNHRTDKILQICC 32


>gi|242014471|ref|XP_002427913.1| 3' histone mRNA exonuclease, putative [Pediculus humanus corporis]
 gi|212512397|gb|EEB15175.1| 3' histone mRNA exonuclease, putative [Pediculus humanus corporis]
          Length = 386

 Score = 35.7 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 71/216 (32%), Gaps = 13/216 (6%)

Query: 9   KIVFDIETTGLDSKNDR--IIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64
            +V D E T  + K DR  IIE  AV +     K    F+++  P      S   ++L G
Sbjct: 105 YVVIDFEATCDNKKIDRQEIIEFPAVLVNSKKQKIEDCFRMYCKPRINPKLSQYCMELTG 164

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ--------NAEWIAHNAKFDVGFINAELQRINKD 116
           IT E + +  +F  + S + ++  +          A     N       ++         
Sbjct: 165 ITQEQVDNAETFDKVLSHYNNWLKKHNLGTKNKRYAVVTDGNWDMSKFLVSQCHYSNVPI 224

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL-LDSHLLSDVYIKMM 175
           P      ++     +  +    N +        + +    +      D+  ++ + +KM+
Sbjct: 225 PKWGKTWVNLKKTFKNFYQKGENRICLKTMLEMLNMEFIGRPHCGLDDAKNIARILLKMI 284

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             GS I    +    R     K    + +   R   
Sbjct: 285 YDGSNIQINERLASVRRVNINKNINDDDTEDSRTTL 320


>gi|188587656|ref|YP_001921717.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188497937|gb|ACD51073.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 204

 Score = 35.7 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 42/137 (30%), Gaps = 20/137 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQVFL---CP---NGRKNS 56
           M+ + FD ETT +   +  I ++  + +         T + F   +    P        S
Sbjct: 1   MKLLFFDTETTSIKPGS--ICQLSYITVDASSKPQITTGKNFFFTVDEMNPSAQEIHGFS 58

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            E L        F    P F   F E              HN  FD+ F+  EL  + +D
Sbjct: 59  LEKLYELSEGQYFEDLVPEFFKDFIEADFLI--------GHNVNFDIRFLKHELSLLGED 110

Query: 117 PLDPSRIIDTLSIARRK 133
            L        +      
Sbjct: 111 FLPKHSFCTMMYYKDIC 127


>gi|300782107|ref|YP_003762398.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei
          U32]
 gi|299791621|gb|ADJ41996.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei
          U32]
          Length = 461

 Score = 35.7 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
          V DI TTGL  ++ R++E+ AV +             + 
Sbjct: 22 VVDIRTTGL--RSGRVVELAAVRVSADGSFGGELTTLVD 58


>gi|289812558|ref|ZP_06543187.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. AG3]
          Length = 96

 Score = 35.7 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL   +  I+EI  ++   +          + P  +    EA+ +HGIT+E
Sbjct: 26 YLFIDTETTGLG-DDAEIVEICIIDSHGFIM----LNTLIKP-TKPIPDEAIAIHGITNE 79

Query: 69 FLKDKPSFSSIF 80
           +   P+++ I+
Sbjct: 80 MVAFAPAWTDIW 91


>gi|229062584|ref|ZP_04199894.1| Sporulation inhibitor KapD [Bacillus cereus AH603]
 gi|228716687|gb|EEL68383.1| Sporulation inhibitor KapD [Bacillus cereus AH603]
          Length = 207

 Score = 35.7 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 55/183 (30%), Gaps = 16/183 (8%)

Query: 8   RKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SP 57
           R +  D E T         G   +   IIE+G V ++   K   T+   + P    + + 
Sbjct: 5   RFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSSHVRPKTFPSLTD 60

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              K  GI  E +    SF  +  +  ++        +                   + P
Sbjct: 61  RCKKFLGIKQEVVDKGVSFHELVEKLAEYEKRCKPTIVTWGNMDMKVLKQNCEMAGVEFP 120

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                   +L   +     ++  L    + YG       KH   LD  + +    K++  
Sbjct: 121 FFGQCRDLSLEYKKFFGERNQTGLWKAIEAYGKA--GTGKHHCALDDAMTTYNIFKLVEK 178

Query: 178 GSQ 180
             +
Sbjct: 179 DKE 181


>gi|152985597|ref|YP_001350999.1| oligoribonuclease [Pseudomonas aeruginosa PA7]
 gi|166216274|sp|A6VD64|ORN_PSEA7 RecName: Full=Oligoribonuclease
 gi|150960755|gb|ABR82780.1| oligoribonuclease [Pseudomonas aeruginosa PA7]
          Length = 180

 Score = 35.7 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +N    I  D+E TGLD   D IIE+ 
Sbjct: 2  QNPQNLIWIDLEMTGLDPDRDVIIEMA 28


>gi|28210675|ref|NP_781619.1| hypothetical protein CTC00967 [Clostridium tetani E88]
 gi|28203113|gb|AAO35556.1| conserved protein [Clostridium tetani E88]
          Length = 274

 Score = 35.7 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 1   MIRKNKMRKIV-FDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           + ++  M +I  FDIETTG D +N+ I  I +G  E        + +   L         
Sbjct: 25  IFKRYYMDEIAYFDIETTGFDRENNNIILISLGWYEDYHNFIIKQYYAESLQEEYDILKS 84

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEF 83
               +         +  +F   F ++
Sbjct: 85  FGEDIKDFHVWSSYNGIAFDEPFIKY 110


>gi|310780268|ref|YP_003968600.1| Exodeoxyribonuclease I [Ilyobacter polytropus DSM 2926]
 gi|309749591|gb|ADO84252.1| Exodeoxyribonuclease I [Ilyobacter polytropus DSM 2926]
          Length = 487

 Score = 35.7 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 59/217 (27%), Gaps = 2/217 (0%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNR-TFQVFLCPNGRKNSPEALKLHGITDEFL 70
           D ET G D K DRI +   V    D+   +   +   +  +   N   ++       E  
Sbjct: 9   DYETFGADPKRDRISQFAGVRTDMDFKVVDEMVYYCKVAEDYLPNPEASIITGITPKESN 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +   + + +    +  F ++    I +N+      +   L              +  S  
Sbjct: 69  EKGITENELAEILFKEFTKEGTVTIGYNSIKFDDEVTRNLFYRTFRDPYEREWKNNCSRW 128

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
                     +                   L +  + + +  +         +      +
Sbjct: 129 DFMRAILGVYVMKPELLKWPLKDDGRPSFRLEELSIANGIIHENAHDAKSDVYATIGLAE 188

Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
              K+          L+    + + ++K+EL  H   
Sbjct: 189 LISKKSPNVFDYFFNLRDKDFVKSELSKDELFLHIDF 225


>gi|282882795|ref|ZP_06291400.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B]
 gi|281297206|gb|EFA89697.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B]
          Length = 299

 Score = 35.7 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/20 (70%), Positives = 15/20 (75%)

Query: 14 IETTGLDSKNDRIIEIGAVE 33
          IETTGL  KND II IG V+
Sbjct: 19 IETTGLSIKNDVIIAIGIVK 38


>gi|195449894|ref|XP_002072273.1| GK22765 [Drosophila willistoni]
 gi|194168358|gb|EDW83259.1| GK22765 [Drosophila willistoni]
          Length = 190

 Score = 35.7 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 13 DIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
          D+E TGLD + D+I+E+   +   D +  +      +                   
Sbjct: 21 DLEMTGLDIQKDKILEVSCLITDKDLNIQSNGLSFAINHPQEVYEQMNEWCIKQHY 76


>gi|321471838|gb|EFX82810.1| hypothetical protein DAPPUDRAFT_195366 [Daphnia pulex]
          Length = 228

 Score = 35.7 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 8   RKIVFDIETTGLDSKN----DRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN-SPEALK 61
           R +V D E T    +       IIE   + +  +  +T  TF  ++ P      +P    
Sbjct: 36  RLLVLDFEATCDSQRGTIRPQEIIEFPVLNVETNGFETVGTFHRYVKPQVHPTLTPFCTS 95

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
           L GI  + ++D      +  +F  +   Q+
Sbjct: 96  LTGIIQDMVEDAAPLKEVMEDFHKWLLSQH 125


>gi|281202353|gb|EFA76558.1| putative RNase III [Polysphondylium pallidum PN500]
          Length = 164

 Score = 35.7 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 8/155 (5%)

Query: 10  IVFDIETT---GLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           +V D E T   G       IIE     VE+        TF+ ++ P      S    +L 
Sbjct: 9   VVLDFEATCENGTKIAKQEIIEFPSVIVEVETCKIV-DTFREYVKPVHNPRLSAFCTELT 67

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI   ++ +  +FS +      +  + N   +    +  V                    
Sbjct: 68  GIQQAWVDEAQTFSVVMENHRQWLIK-NQLLLPSGERSPVNTFTFLTCGDWDLNQMLPVQ 126

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
              L+ +  K PS   +  ++ K +       ++ 
Sbjct: 127 YKFLAGSDGKWPSYFCEWINIKKSFEQHYKVPARG 161


>gi|225028307|ref|ZP_03717499.1| hypothetical protein EUBHAL_02579 [Eubacterium hallii DSM 3353]
 gi|224954353|gb|EEG35562.1| hypothetical protein EUBHAL_02579 [Eubacterium hallii DSM 3353]
          Length = 210

 Score = 35.7 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 27/73 (36%)

Query: 25 RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFW 84
           II++GAV L +  K   T   ++ P           L GI    +K+ P          
Sbjct: 18 EIIQVGAVLLDEEYKEIGTLCQYVHPEFGILDYFITNLTGIEKGQIKNAPKLKDALIHMA 77

Query: 85 DFFNEQNAEWIAH 97
          D+  E+  +  A 
Sbjct: 78 DWLGEREYKVFAW 90


>gi|187933667|ref|YP_001886759.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           B str. Eklund 17B]
 gi|187721820|gb|ACD23041.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           B str. Eklund 17B]
          Length = 204

 Score = 35.7 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 42/137 (30%), Gaps = 20/137 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQVFL---CP---NGRKNS 56
           M+ + FD ETT +   +  I ++  + +         T + F   +    P        S
Sbjct: 1   MKLLFFDTETTSIKPGS--ICQLSYITVDASSKPQITTGKNFFFTVDEMNPSAQEIHGFS 58

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            E L        F    P F   F E              HN  FD+ F+  EL  + +D
Sbjct: 59  LEKLYELSEGQYFEDLVPEFFKDFIEADFLI--------GHNVNFDIRFLKHELSLLGED 110

Query: 117 PLDPSRIIDTLSIARRK 133
            L        +      
Sbjct: 111 FLPKHSFCTMIYYKDIC 127


>gi|330811421|ref|YP_004355883.1| exodeoxyribonuclease I [Pseudomonas brassicacearum subsp.
          brassicacearum NFM421]
 gi|327379529|gb|AEA70879.1| Exodeoxyribonuclease I [Pseudomonas brassicacearum subsp.
          brassicacearum NFM421]
          Length = 477

 Score = 35.7 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALK 61
          D ETTG++ + DR +++  +    + ++ +    ++  P+       A  
Sbjct: 8  DYETTGINPRCDRPLQVAGIRTDFELNEIDEPVNLYCRPSDDILPHPAAC 57


>gi|15927574|ref|NP_375107.1| ATP-dependent helicase [Staphylococcus aureus subsp. aureus N315]
 gi|29028621|ref|NP_803310.1| Pol III-like ATP dependent helicase [Staphylococcus phage phi 12]
 gi|30043986|ref|NP_835521.1| probable ATP-dependent helicase [Staphylococcus phage phiN315]
 gi|87161004|ref|YP_494621.1| putative exonuclease [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195288|ref|YP_500092.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|118725058|ref|YP_908794.1| probable ATP-dependent helicase [Staphylococcus phage phiNM3]
 gi|151222134|ref|YP_001332956.1| phage exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161510224|ref|YP_001575883.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253315032|ref|ZP_04838245.1| putative exonuclease [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253729784|ref|ZP_04863949.1| DNA polymerase III epsilon subunit family exonuclease
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|258413674|ref|ZP_05681948.1| phage exonuclease [Staphylococcus aureus A9763]
 gi|258425109|ref|ZP_05687979.1| phage exonuclease [Staphylococcus aureus A9635]
 gi|258434316|ref|ZP_05688717.1| exonuclease family protein [Staphylococcus aureus A9299]
 gi|258447837|ref|ZP_05695972.1| phage exonuclease [Staphylococcus aureus A6224]
 gi|258452362|ref|ZP_05700372.1| ATP-dependent helicase [Staphylococcus aureus A5948]
 gi|282917349|ref|ZP_06325104.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus D139]
 gi|282928799|ref|ZP_06336392.1| exodeoxyribonuclease [Staphylococcus aureus A10102]
 gi|283771164|ref|ZP_06344055.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus H19]
 gi|294849552|ref|ZP_06790294.1| exodeoxyribonuclease [Staphylococcus aureus A9754]
 gi|295428583|ref|ZP_06821210.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297589943|ref|ZP_06948583.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|13701793|dbj|BAB43086.1| probable ATP-dependent helicase [Staphylococcus aureus subsp.
           aureus N315]
 gi|18920545|gb|AAL82285.1| Pol III-like ATP dependent helicase [Staphylococcus phage phi 12]
 gi|87126978|gb|ABD21492.1| putative exonuclease [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202846|gb|ABD30656.1| exonuclease family [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|104641823|gb|ABF73165.1| probable ATP-dependent helicase [Staphylococcus phage phiNM3]
 gi|150374934|dbj|BAF68194.1| phage exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160369033|gb|ABX30004.1| possible exodeoxyribonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253726519|gb|EES95248.1| DNA polymerase III epsilon subunit family exonuclease
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|257839627|gb|EEV64097.1| phage exonuclease [Staphylococcus aureus A9763]
 gi|257844692|gb|EEV68736.1| phage exonuclease [Staphylococcus aureus A9635]
 gi|257849264|gb|EEV73245.1| exonuclease family protein [Staphylococcus aureus A9299]
 gi|257858934|gb|EEV81802.1| phage exonuclease [Staphylococcus aureus A6224]
 gi|257859949|gb|EEV82787.1| ATP-dependent helicase [Staphylococcus aureus A5948]
 gi|269941473|emb|CBI49870.1| putative phage exonuclease [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282318976|gb|EFB49331.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus D139]
 gi|282589534|gb|EFB94622.1| exodeoxyribonuclease [Staphylococcus aureus A10102]
 gi|283459758|gb|EFC06849.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus H19]
 gi|285817684|gb|ADC38171.1| Pol III-like ATP dependent helicase, phage associated
           [Staphylococcus phage phiN315]
 gi|294823689|gb|EFG40116.1| exodeoxyribonuclease [Staphylococcus aureus A9754]
 gi|295127565|gb|EFG57204.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297577071|gb|EFH95785.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|312830370|emb|CBX35212.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315196784|gb|EFU27129.1| possible exodeoxyribonuclease [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320143661|gb|EFW35439.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329724440|gb|EGG60950.1| exonuclease [Staphylococcus aureus subsp. aureus 21189]
          Length = 310

 Score = 35.3 bits (79), Expect = 6.8,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 7/172 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET  ++   +   E+ AV L+      + +  ++ P   + + +  K+H I ++ +
Sbjct: 8   VLDFET--MNEHMNSPCEV-AVSLIKDLSIVKVYSSYINPPNNRYNLKNAKIHKIPEDVI 64

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P       +   +  +++   IAHNA FD+  +       +         +D+++I 
Sbjct: 65  LKAPK-YPDIYQEILYLLKESHLIIAHNALFDISVLKNTNNYYDLPVP-NFMYVDSINIF 122

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           R  H  S   L +LC  Y   I     H A  D   LS + I +       +
Sbjct: 123 RSFHAISSFKLENLCSLY--DIDKEKLHSAKFDVLALSKMLISLAKNNQHYS 172


>gi|330807223|ref|YP_004351685.1| Oligoribonuclease [Pseudomonas brassicacearum subsp.
          brassicacearum NFM421]
 gi|327375331|gb|AEA66681.1| Oligoribonuclease [Pseudomonas brassicacearum subsp.
          brassicacearum NFM421]
          Length = 180

 Score = 35.3 bits (79), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +N    I  D+E TGL+   D IIE+ 
Sbjct: 2  QNPQNLIWIDLEMTGLNPDTDVIIEMA 28


>gi|302755050|ref|XP_002960949.1| hypothetical protein SELMODRAFT_73963 [Selaginella moellendorffii]
 gi|300171888|gb|EFJ38488.1| hypothetical protein SELMODRAFT_73963 [Selaginella moellendorffii]
          Length = 397

 Score = 35.3 bits (79), Expect = 6.9,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 63/222 (28%), Gaps = 17/222 (7%)

Query: 9   KIVFDIETTG----LDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +V D E T        +   IIE  +V + +       +FQ ++ P    N        
Sbjct: 112 FVVIDFEATCDSTVFFPQ--EIIEFPSVLVAVHSLSVEDSFQTYVKPT--FNPQLTDFCK 167

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            +T        +  ++             + +       + + + + + +         +
Sbjct: 168 RLTGIEQTQVDNGMALAEALVKHDKWLEDKGVKSKRFGVITWTDWDCKVMLDFECRLKGL 227

Query: 124 IDTLSIARRKHPSSRNDLNS-------LCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +  +  S                ++        +H  L D+   + + ++++ 
Sbjct: 228 TKPSYFNKWINLKSCFQEKFGDKFNLKKAVQHAGLQWQGREHCGLDDAKNTASLAMELVR 287

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
            G QI F  +    R       +   +  LK+      R + 
Sbjct: 288 RGMQIGFT-QHQSSRKPAITNISSEFMPKLKKILEALPRSSD 328


>gi|70734062|ref|YP_257702.1| oligoribonuclease [Pseudomonas fluorescens Pf-5]
 gi|85542915|sp|Q4KJ81|ORN_PSEF5 RecName: Full=Oligoribonuclease
 gi|68348361|gb|AAY95967.1| oligoribonuclease [Pseudomonas fluorescens Pf-5]
          Length = 180

 Score = 35.3 bits (79), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +N    I  D+E TGL+   D IIE+ 
Sbjct: 2  QNPQNLIWIDLEMTGLNPDTDVIIEMA 28


>gi|238909183|ref|YP_002939650.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
 gi|238873420|gb|ACR73129.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
          Length = 724

 Score = 35.3 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 48/161 (29%), Gaps = 17/161 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGLD             + +             P+             + ++ +
Sbjct: 86  VLDVETTGLD-------------VYNDILVGI---CLYNPDLPSF-YVPFNHTDLQNKRV 128

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + + +     +    +    + + I HN KFD   +  +  +   +    + I   +   
Sbjct: 129 EGQMTEEECKAVMLPYLANGSLKCINHNIKFDDKVVTFQWGQRIANVWWDTNIAGWVLNE 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             KH         +    G           +  +++  D++
Sbjct: 189 NEKHGLKPMYNKYILNGEGSDEDFGDLFEGIPCNYIPIDIF 229


>gi|163842028|ref|YP_001626433.1| oligoribonuclease [Renibacterium salmoninarum ATCC 33209]
 gi|162955504|gb|ABY25019.1| oligoribonuclease [Renibacterium salmoninarum ATCC 33209]
          Length = 215

 Score = 35.3 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYS--KTNRTFQVFLCPN 51
          R +  D E TGLD + D +IE+ AV + D      +    V + P+
Sbjct: 7  RIVWIDCEMTGLDLEADALIEV-AVLITDSELNILDDGVDVVIKPD 51


>gi|15600144|ref|NP_253638.1| oligoribonuclease [Pseudomonas aeruginosa PAO1]
 gi|107104050|ref|ZP_01367968.1| hypothetical protein PaerPA_01005123 [Pseudomonas aeruginosa
          PACS2]
 gi|116053100|ref|YP_793419.1| oligoribonuclease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894046|ref|YP_002442915.1| oligoribonuclease [Pseudomonas aeruginosa LESB58]
 gi|254238334|ref|ZP_04931657.1| oligoribonuclease [Pseudomonas aeruginosa C3719]
 gi|254244161|ref|ZP_04937483.1| oligoribonuclease [Pseudomonas aeruginosa 2192]
 gi|296391791|ref|ZP_06881266.1| oligoribonuclease [Pseudomonas aeruginosa PAb1]
 gi|313109953|ref|ZP_07795880.1| oligoribonuclease [Pseudomonas aeruginosa 39016]
 gi|11386963|sp|P57665|ORN_PSEAE RecName: Full=Oligoribonuclease
 gi|122256887|sp|Q02F67|ORN_PSEAB RecName: Full=Oligoribonuclease
 gi|9951232|gb|AAG08336.1|AE004908_2 oligoribonuclease [Pseudomonas aeruginosa PAO1]
 gi|115588321|gb|ABJ14336.1| oligoribonuclease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170265|gb|EAZ55776.1| oligoribonuclease [Pseudomonas aeruginosa C3719]
 gi|126197539|gb|EAZ61602.1| oligoribonuclease [Pseudomonas aeruginosa 2192]
 gi|218774274|emb|CAW30091.1| oligoribonuclease [Pseudomonas aeruginosa LESB58]
 gi|310882382|gb|EFQ40976.1| oligoribonuclease [Pseudomonas aeruginosa 39016]
          Length = 180

 Score = 35.3 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +N    I  D+E TGLD   D IIE+ 
Sbjct: 2  QNPQNLIWIDLEMTGLDPDRDVIIEMA 28


>gi|331088918|ref|ZP_08337827.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330406516|gb|EGG86024.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 723

 Score = 35.3 bits (79), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 49/161 (30%), Gaps = 17/161 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGLD             + +             P+   ++        + +  +
Sbjct: 87  VLDVETTGLD-------------IYNDILVGI---CLYNPDL-PSAYVPFNHTDLQNRRV 129

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + + +     +    +   ++ + I HN KFD   I     +   +    + I   +   
Sbjct: 130 EGQMTEEECKAVMLPYLANKDLKCINHNIKFDDKMITFNWGQRIANVWWDTNIASWVLNE 189

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             KH         +    G           +  +++  +++
Sbjct: 190 NEKHGLKPLYNKYILNGEGSDEDFGDLFEGIPCNYIPIEIF 230


>gi|260551423|ref|ZP_05825623.1| DNA polymerase III [Acinetobacter sp. RUH2624]
 gi|260405586|gb|EEW99078.1| DNA polymerase III [Acinetobacter sp. RUH2624]
          Length = 226

 Score = 35.3 bits (79), Expect = 7.2,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 68/237 (28%), Gaps = 23/237 (9%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVE--LLDYSKT---NRTFQVFL-CPNGRKNSPEAL 60
           M+ I+ D ET   +  N   IEI      L +       +  F  F  CP        A+
Sbjct: 1   MKAIILDTET---NKLNGYPIEIAYAPFSLENGQLLVLKDEVFNRFYSCPEPIDLEAMAV 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                 D   +                 E     + HN  +DV  +N     I    +  
Sbjct: 58  HNIIEADIEGQPS--------CETFRLPEGVEFIVGHNIDYDVKALNKCGPAIKAKTICT 109

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +   +      H  +      +  R       R  H A  D +    + I ++     
Sbjct: 110 LALTRDVWPDLTSHKLAVLYYFVMSNREEARKHLRHAHSARADVYFTGIILIALIERLGI 169

Query: 181 INFGFKTNEDRFFKEEK----KTVPNISLLKRDKPLFT-RITKEELDEH-DKTIQTL 231
            +           +  K           L +  +P  +  + KE+LD H  K +Q +
Sbjct: 170 KDLNSLYLMSEAVRLPKIMTWGKHKGTPLKELPRPYISWLLNKEDLDPHLRKALQNI 226


>gi|218659835|ref|ZP_03515765.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli
          IE4771]
          Length = 77

 Score = 35.3 bits (79), Expect = 7.3,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          M+ I  D ET   + +      +G   + +   T R  +  + P   + S   + +HGI 
Sbjct: 1  MKTIAIDFET--ANEQRGSACSVGLAWIEEGRVT-RVEERLIRPREMRFSGMNIAIHGIR 57

Query: 67 DEFLKDKPSFSSIFSEFWD 85
           E ++D P F  +  EF D
Sbjct: 58 PEDVEDAPEFPEVTDEFHD 76


>gi|153802855|ref|ZP_01957441.1| oligoribonuclease [Vibrio cholerae MZO-3]
 gi|124121610|gb|EAY40353.1| oligoribonuclease [Vibrio cholerae MZO-3]
          Length = 156

 Score = 35.3 bits (79), Expect = 7.3,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD +  +IIE+ 
Sbjct: 11 IDLEMTGLDPEMHKIIEMA 29


>gi|254465457|ref|ZP_05078868.1| exonuclease superfamily [Rhodobacterales bacterium Y4I]
 gi|206686365|gb|EDZ46847.1| exonuclease superfamily [Rhodobacterales bacterium Y4I]
          Length = 169

 Score = 35.3 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
          M+ +  D E + L   +  I E+G  ++ +     ++    + P+      E
Sbjct: 1  MQPVFIDFEASSLSPASWPI-EVGLAKIDNDEIVVKS--RLIRPHDSWAMSE 49


>gi|253681455|ref|ZP_04862252.1| possible elongation subunit of DNA-dependent DNA polymerase
           [Clostridium botulinum D str. 1873]
 gi|253561167|gb|EES90619.1| possible elongation subunit of DNA-dependent DNA polymerase
           [Clostridium botulinum D str. 1873]
          Length = 265

 Score = 35.3 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 2/89 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEI--GAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
             I FDIETTG D +   +I I  G  +  +     + F   L    +        +   
Sbjct: 24  NIIFFDIETTGFDKEKASVILISGGWFDENNKFIIKQYFAESLDEEVQLLESFKKDISKF 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEW 94
                 +  +F   F +     N  +   
Sbjct: 84  HTWCSYNGKAFDEPFIKKRMDINNIDFIP 112


>gi|169342705|ref|ZP_02863746.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens C str. JGS1495]
 gi|169299211|gb|EDS81281.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens C str. JGS1495]
          Length = 204

 Score = 35.3 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 4/129 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ + FD ETTG+   +  I ++  + +   +K  +T    +     +  PEA ++HG +
Sbjct: 1   MKLLFFDTETTGVKPGS--ICQLSYILVDTSTKPQKTIGKNIFFTVDEMEPEAERIHGFS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWI--AHNAKFDVGFINAELQRINKDPLDPSRII 124
            E L +          + DF N+         HN +FD+ F+  EL  + +     +   
Sbjct: 59  LEKLYELSEGMHFEDLYADFINDFLEADFIIGHNVQFDIKFLKHELLGLGEFFEPNNVFC 118

Query: 125 DTLSIARRK 133
                    
Sbjct: 119 TMKYYKDIC 127


>gi|162457127|ref|YP_001619494.1| hypothetical protein sce8842 [Sorangium cellulosum 'So ce 56']
 gi|161167709|emb|CAN99014.1| Hypothetical protein T07A9.5a [Sorangium cellulosum 'So ce 56']
          Length = 214

 Score = 35.3 bits (79), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 6/52 (11%)

Query: 9  KIVFDIETT-----GLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRK 54
           +V D+E T             IIE+GAV +   +       Q F+ P    
Sbjct: 7  YLVIDLEATCSDDPSFPRDEMEIIEVGAVLVDAGTLRPAAELQCFVRPIRHP 58


>gi|108800606|ref|YP_640803.1| oligoribonuclease [Mycobacterium sp. MCS]
 gi|119869745|ref|YP_939697.1| oligoribonuclease [Mycobacterium sp. KMS]
 gi|126436222|ref|YP_001071913.1| oligoribonuclease [Mycobacterium sp. JLS]
 gi|122976715|sp|Q1B5T7|ORN_MYCSS RecName: Full=Oligoribonuclease
 gi|166216269|sp|A3Q2P5|ORN_MYCSJ RecName: Full=Oligoribonuclease
 gi|166216270|sp|A1UJ99|ORN_MYCSK RecName: Full=Oligoribonuclease
 gi|108771025|gb|ABG09747.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium sp.
          MCS]
 gi|119695834|gb|ABL92907.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium sp.
          KMS]
 gi|126236022|gb|ABN99422.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium sp.
          JLS]
          Length = 215

 Score = 35.3 bits (79), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)

Query: 7  MR-KIV-FDIETTGLDSKNDRIIEIGAV 32
          MR ++V  D E TGLD ++D +IEI  +
Sbjct: 1  MRDELVWIDCEMTGLDLRSDLLIEIAVL 28


>gi|18310648|ref|NP_562582.1| hypothetical protein CPE1666 [Clostridium perfringens str. 13]
 gi|110800096|ref|YP_696353.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens ATCC 13124]
 gi|168211446|ref|ZP_02637071.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|168214501|ref|ZP_02640126.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens CPE str. F4969]
 gi|168216953|ref|ZP_02642578.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens NCTC 8239]
 gi|182626374|ref|ZP_02954128.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens D str. JGS1721]
 gi|18145329|dbj|BAB81372.1| hypothetical protein [Clostridium perfringens str. 13]
 gi|110674743|gb|ABG83730.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens ATCC 13124]
 gi|170710592|gb|EDT22774.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|170714024|gb|EDT26206.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens CPE str. F4969]
 gi|177908325|gb|EDT70873.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens D str. JGS1721]
 gi|182380871|gb|EDT78350.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens NCTC 8239]
          Length = 204

 Score = 35.3 bits (79), Expect = 7.5,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 4/129 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ + FD ETTG+   +  I ++  + +   +K  +T    +     +  PEA ++HG +
Sbjct: 1   MKLLFFDTETTGVKPGS--ICQLSYILVDTSTKPQKTIGKNIFFTVDEMEPEAERIHGFS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWI--AHNAKFDVGFINAELQRINKDPLDPSRII 124
            E L +          + DF N+         HN +FD+ F+  EL  + +     +   
Sbjct: 59  LEKLYELSEGMYFEDLYADFINDFLEADFIIGHNVQFDIKFLKHELLGLGEFFEPNNVFC 118

Query: 125 DTLSIARRK 133
                    
Sbjct: 119 TMKYYKDIC 127


>gi|163942626|ref|YP_001647510.1| sporulation inhibitor KapD [Bacillus weihenstephanensis KBAB4]
 gi|229014099|ref|ZP_04171221.1| Sporulation inhibitor KapD [Bacillus mycoides DSM 2048]
 gi|229135740|ref|ZP_04264512.1| Sporulation inhibitor KapD [Bacillus cereus BDRD-ST196]
 gi|163864823|gb|ABY45882.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           weihenstephanensis KBAB4]
 gi|228647706|gb|EEL03769.1| Sporulation inhibitor KapD [Bacillus cereus BDRD-ST196]
 gi|228747207|gb|EEL97088.1| Sporulation inhibitor KapD [Bacillus mycoides DSM 2048]
          Length = 207

 Score = 35.3 bits (79), Expect = 7.6,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 16/183 (8%)

Query: 8   RKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SP 57
           R +  D E T         G   +   IIE+G V ++   K   T+   + P    + + 
Sbjct: 5   RFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSSHIRPKTFPSLTD 60

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              K  GI  E +    SF  +  +  ++        +           +       + P
Sbjct: 61  RCKKFLGIKQEVVDKGISFHELVEKLAEYEKSGKPTIVTWGNMDMKVLKHNCEMAGVEFP 120

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                   +L   +     ++  L    + YG       KH   LD  + +    K++  
Sbjct: 121 FFGQCRDLSLEYKKFFGERNQTGLWKAIEAYGKA--GTGKHHCALDDAMTTYNIFKLVEK 178

Query: 178 GSQ 180
             +
Sbjct: 179 DKE 181


>gi|195392333|ref|XP_002054812.1| GJ24646 [Drosophila virilis]
 gi|194152898|gb|EDW68332.1| GJ24646 [Drosophila virilis]
          Length = 187

 Score = 35.3 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEALKLHGITD 67
          D+E TGL    D+I+E+  +              F +    +  +          +
Sbjct: 18 DLEMTGLSIDKDQILEVACIITDKQLNIKAECLCFAIRHPPQVYNNMNEWCIKHHN 73


>gi|315656346|ref|ZP_07909235.1| oligoribonuclease [Mobiluncus curtisii subsp. holmesii ATCC
          35242]
 gi|315492905|gb|EFU82507.1| oligoribonuclease [Mobiluncus curtisii subsp. holmesii ATCC
          35242]
          Length = 198

 Score = 35.3 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCP 50
           D E TGLD   D +IE+  +      +  +    + + P
Sbjct: 4  IDCEMTGLDLHVDELIEVAVIVTDAELNPLDSGIDLLIKP 43


>gi|327265893|ref|XP_003217742.1| PREDICTED: three prime repair exonuclease 1-like [Anolis
           carolinensis]
          Length = 329

 Score = 35.3 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 8/127 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+E TGL     +I E+    +        T         R + P+ + L     +
Sbjct: 15  FVFMDLEATGLPPSRPKIAEMCLFAV--------TRHALENLQYRNSHPKPIPLFPRVVD 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L    +    F+           E  + N K         +         P   +   +
Sbjct: 67  KLCVCINPDKPFTPMASSITGLTNEMFSWNKKQKFNLDILHMMTAFFIRQHPPICLVAHN 126

Query: 129 IARRKHP 135
                 P
Sbjct: 127 GCSYDFP 133


>gi|328717754|ref|XP_001946025.2| PREDICTED: ERI1 exoribonuclease 3-like [Acyrthosiphon pisum]
 gi|239793057|dbj|BAH72792.1| ACYPI003543 [Acyrthosiphon pisum]
          Length = 248

 Score = 35.3 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 14/137 (10%)

Query: 8   RKIVFDIETT---G---LDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKN- 55
           +  V D E T   G   L  +   IIE   + +         +    F  ++ P      
Sbjct: 48  KFFVLDFEATCDNGAHLLKPQ--EIIEFPCILVKFNMAKGGFEVVSIFHSYVKPIIHTVL 105

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           +    +L G+T + + + P F  +F  F ++ N+        +     G  +     I +
Sbjct: 106 TEYCTQLTGVTQDMVSNSPPFDDVFFNFCNWHNDHTNMGKEKSIIVTSGNWDIGNMFIEQ 165

Query: 116 DPLDPSRIIDTLSIARR 132
             L PS I     +   
Sbjct: 166 CKLFPSTIKIPEFMCTW 182


>gi|257453441|ref|ZP_05618736.1| oligoribonuclease Orn [Enhydrobacter aerosaccus SK60]
 gi|257449193|gb|EEV24141.1| oligoribonuclease Orn [Enhydrobacter aerosaccus SK60]
          Length = 183

 Score = 35.3 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGLD+ +D IIEI 
Sbjct: 11 IDLEMTGLDTLSDTIIEIA 29


>gi|332978247|gb|EGK14977.1| oligoribonuclease [Psychrobacter sp. 1501(2011)]
          Length = 193

 Score = 35.3 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 55/178 (30%), Gaps = 11/178 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAV---ELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITD 67
            D+E TGLD+ ND IIE+  +   E L+       F + +             K HG + 
Sbjct: 21  IDLEMTGLDTMNDDIIEVATIVTDEDLNILAEGPVFAIKVSDQKLNGMDDWNTKQHGQSG 80

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              + + S  ++     +            N   D G        I +D    +R +  L
Sbjct: 81  LIDRVRRSTVTLEQAEKETIEF-------LNKWVDEGKSPMCGNSICQDRRFLARQMPQL 133

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                      + +  LC R+   I    +      +       I+ +    Q  F  
Sbjct: 134 ERFFHYRNLDVSSIKELCYRWRPDILKGVEKTGSHLAMDDIRDSIRELKHYRQHFFKL 191


>gi|311069646|ref|YP_003974569.1| sporulation inhibitor KapD [Bacillus atrophaeus 1942]
 gi|310870163|gb|ADP33638.1| sporulation inhibitor KapD [Bacillus atrophaeus 1942]
          Length = 205

 Score = 35.3 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 39/147 (26%), Gaps = 1/147 (0%)

Query: 25  RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFW 84
            IIE G V+ +D +    TF  ++ P       +  K      +   D+      F    
Sbjct: 28  EIIEAGIVKSVDDAVV-ETFSSYIKPKKFPKLTKRCKSFLKITQKDVDEGMKFEEFIRKL 86

Query: 85  DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSL 144
           +  + Q    I      D+  +       +        + D     +             
Sbjct: 87  NELDPQKDCTIVTWGNMDMKVLKQNCMFNHIPFPFKGEMRDLSLEYKNFFGDRTLTGLWK 146

Query: 145 CKRYGITISHRSKHGALLDSHLLSDVY 171
                      + H AL D+     ++
Sbjct: 147 AAEEYGDEGTGTHHKALDDALTTHKLF 173


>gi|299769724|ref|YP_003731750.1| DNA polymerase III, epsilon subunit [Acinetobacter sp. DR1]
 gi|298699812|gb|ADI90377.1| DNA polymerase III, epsilon subunit [Acinetobacter sp. DR1]
          Length = 226

 Score = 35.3 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 67/237 (28%), Gaps = 23/237 (9%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKT---NRTFQVFL-CPNGRKNSPEAL 60
           M+ I+ D ET   +  N   IEI    + + +       +  F  F  CP        A+
Sbjct: 1   MKAIILDTET---NKLNGYPIEIAYASIGIENGQLLVQKDEVFNRFYSCPEPIDLEAMAV 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                 D   +                 E     + HN  +D+  +N     I    +  
Sbjct: 58  HNIIEADIEGQPS--------CETFRLPEGVEFIVGHNIDYDIKALNKCGPAIKAKTICT 109

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +   +      H  +      +  R       R  H A  D +    + I ++     
Sbjct: 110 LALARDVWPDLPSHKLAVLYYFVMSNREEARKHLRHAHSARADIYFTGIILIALIERLGI 169

Query: 181 INFGFKTNEDRFFKEEK----KTVPNISLLKRDKPLFT-RITKEELDEH-DKTIQTL 231
            +           +  K           L     P  T  + KE+LD H  K +Q +
Sbjct: 170 KDLNSLFLMSEAVRLPKIMSWGKHKGTPLKDLPHPYITWLLNKEDLDPHLRKALQNI 226


>gi|17548214|ref|NP_508415.1| Cell-death-Related Nuclease family member (crn-4) [Caenorhabditis
           elegans]
 gi|2496805|sp|Q10905|CRN4_CAEEL RecName: Full=Cell death-related nuclease 4; Flags: Precursor
 gi|1086852|gb|AAA82440.1| Hypothetical protein AH9.2 [Caenorhabditis elegans]
 gi|31747257|gb|AAP57300.1| cell death-related nuclease 4 [Caenorhabditis elegans]
          Length = 298

 Score = 35.3 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 54/187 (28%), Gaps = 13/187 (6%)

Query: 11  VFDIETTGLDSKND---RIIEIGAVELL---DYSKTNRTFQVFLCPN-GRKNSPEALKLH 63
           + D ETT   +  D    +I+   V      D  + + +F  ++ P   R  +   +   
Sbjct: 13  ILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFT 72

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINKDPL 118
           GI    +    +F  ++ +F  +            ++  + +        +++  N    
Sbjct: 73  GIPQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMP 132

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
               + I+   I   +         S     G    +            + D      + 
Sbjct: 133 AFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATIL 192

Query: 178 GSQINFG 184
              IN G
Sbjct: 193 QRMINMG 199


>gi|150015369|ref|YP_001307623.1| exonuclease, RNase T and DNA polymerase III [Clostridium
          beijerinckii NCIMB 8052]
 gi|149901834|gb|ABR32667.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
          beijerinckii NCIMB 8052]
          Length = 303

 Score = 35.3 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 25/67 (37%)

Query: 7  MRKIVFDIE-------TTGLDSKND---------------RIIEIGAVELLDYSKTNRTF 44
          M  I+ D+E       T   + + D                IIEIGAV++  Y K  +  
Sbjct: 1  MGYIIIDLEFNNLKNIT---NYQKDFFEKYGEFDSISLENEIIEIGAVKVDKYMKPIKEI 57

Query: 45 QVFLCPN 51
          + ++ P 
Sbjct: 58 REYIKPK 64


>gi|313201249|ref|YP_004039907.1| exonuclease rnase t and DNA polymerase III [Methylovorus sp.
          MP688]
 gi|312440565|gb|ADQ84671.1| Exonuclease RNase T and DNA polymerase III [Methylovorus sp.
          MP688]
          Length = 182

 Score = 35.3 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E +GL   +DRI+E+ AV
Sbjct: 11 LDMEMSGLLPDSDRILELAAV 31


>gi|227514397|ref|ZP_03944446.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 14931]
 gi|227087263|gb|EEI22575.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 14931]
          Length = 361

 Score = 35.3 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 56/196 (28%), Gaps = 3/196 (1%)

Query: 12  FDIE-TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDEF 69
            D+E  T   ++    +EIG V+  +  K  + F  F+   +   +       +      
Sbjct: 19  LDLEFATHKKTREHLPLEIGVVKYQNGRKVGKQFHRFVYWADAEADDILRGMDYANVTYK 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
              K             F + +      N   D+  +   ++      +D   +      
Sbjct: 79  TYKKQGQWDKIVADLLNFIDFSLPIGGWNVHGDLQVLLEAIKNHGGPLVDEKAVCCFEVD 138

Query: 130 ARRKHPSSRNDLNSLCKRYG-ITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                     +  SL      +     + H AL D  L + VY  ++      ++     
Sbjct: 139 ELVSWLGELPNKPSLRGVGRLLGFDVSNMHHALSDVLLTAQVYDYLVALPEIASWKKAPT 198

Query: 189 EDRFFKEEKKTVPNIS 204
             +  KE  +T     
Sbjct: 199 NTKSTKEAGRTKATKK 214


>gi|317128127|ref|YP_004094409.1| hypothetical protein Bcell_1415 [Bacillus cellulosilyticus DSM
           2522]
 gi|315473075|gb|ADU29678.1| hypothetical protein Bcell_1415 [Bacillus cellulosilyticus DSM
           2522]
          Length = 256

 Score = 35.3 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 41/152 (26%), Gaps = 7/152 (4%)

Query: 25  RIIEIGAVE---LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFS 81
            + EI AVE   + D       +  ++ P  +    +    H          P+F+ +  
Sbjct: 23  ELTEIVAVEVQIIDDIFIKGSKYHSYIRPVYQHWKKKKGVQHYSNW---WLAPTFNDVMK 79

Query: 82  EFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND 140
            F ++++   N  W+  N K          +           +         +     + 
Sbjct: 80  TFQNWYSAYKNYPWVVSNRKVISILDENINKHDCHFYWPKEIVYVNDIYNHMEKDIIAHK 139

Query: 141 LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                     +      +  +L    L   +I
Sbjct: 140 KQKEHSGGHQSHCEEKVNQLILSFMKLRKEFI 171


>gi|195054679|ref|XP_001994252.1| GH11306 [Drosophila grimshawi]
 gi|193896122|gb|EDV94988.1| GH11306 [Drosophila grimshawi]
          Length = 187

 Score = 35.3 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
          D+E TGLD   D+I+E+  +    +            P+     P+ +  +         
Sbjct: 18 DLEMTGLDINTDQILELSCIITDKHLNIKSE-----GPSFAIRHPQHVYDNMNEWCMKHH 72

Query: 73 K 73
           
Sbjct: 73 Y 73


>gi|253999147|ref|YP_003051210.1| oligoribonuclease [Methylovorus sp. SIP3-4]
 gi|253985826|gb|ACT50683.1| Exonuclease RNase T and DNA polymerase III [Methylovorus sp.
          SIP3-4]
          Length = 182

 Score = 35.3 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E +GL   +DRI+E+ AV
Sbjct: 11 LDMEMSGLLPDSDRILELAAV 31


>gi|184201097|ref|YP_001855304.1| oligoribonuclease [Kocuria rhizophila DC2201]
 gi|183581327|dbj|BAG29798.1| oligoribonuclease [Kocuria rhizophila DC2201]
          Length = 199

 Score = 35.3 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 39/148 (26%), Gaps = 10/148 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEF- 69
            D E TGL    D +IE+ A+   D  +       V + P  +        +  + +   
Sbjct: 3   IDCEMTGLSLSEDALIEVAALVTDDELNVLGSGVDVVIKPPQQALEQMNDFVRTMHENSG 62

Query: 70  --------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
                   +    + + +     ++  +     +  N+                D L   
Sbjct: 63  LLPELERGMDMAQAQAMVLDYIREWVPDAGKAPLGGNSVGTDKTFLTRDMPELVDHLHYR 122

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYG 149
            I  +      +    R    +  K   
Sbjct: 123 VIDVSTIKELARRWYPRAYFQAPEKTGN 150


>gi|38234384|ref|NP_940151.1| oligoribonuclease [Corynebacterium diphtheriae NCTC 13129]
 gi|48428192|sp|P61650|ORN_CORDI RecName: Full=Oligoribonuclease
 gi|38200647|emb|CAE50343.1| oligoribonuclease [Corynebacterium diphtheriae]
          Length = 210

 Score = 35.3 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNR 42
          R +  D+E TGL+     I+E+ A+    D +    
Sbjct: 11 RLVWIDLEMTGLELDRHVIVEVAALITDADLNIIGE 46


>gi|150015899|ref|YP_001308153.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902364|gb|ABR33197.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
          Length = 209

 Score = 35.3 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQVFLCPNGRKNSPEALKL 62
           M+ + FD ETT +   +  I ++  + +         T + F   +  +    S + +  
Sbjct: 1   MKLLFFDTETTSIKPGS--ICQLSYITVDASTKPQITTGKNFFFTV--DEMDPSAKEIHG 56

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPS 121
             +   +      +       +          I HN  FDV F+  E L           
Sbjct: 57  FSLEKLYELSDGQYFEDLVPEFLEDFMTADFLIGHNVNFDVRFLKHELLSLGEDFYPKNV 116

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                      K P +  ++ +      I   + S +  +  S  L +
Sbjct: 117 FCTMAYYRDICKIPKANGEIKNPKLSEVIDWLNISSNQIVETSEKLFE 164


>gi|313157971|gb|EFR57377.1| exonuclease [Alistipes sp. HGB5]
          Length = 164

 Score = 35.3 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 3/134 (2%)

Query: 42  RTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
            +F   + P     S     +HG+T +   + P F +++ +            +AHN+ F
Sbjct: 34  DSFYSLIRPRPNFYSRFTTAIHGLTYDDTAEAPDFETVWKQIAPRIEG--LPLVAHNSPF 91

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           D G + A  +                +  R       N                + H AL
Sbjct: 92  DEGCLRAVFELYGMPYPGYRFYCTCRASRRTFGTQLPNHQLHTVSAA-CGFDLANHHHAL 150

Query: 162 LDSHLLSDVYIKMM 175
            D+   + + +K++
Sbjct: 151 ADAEACARIALKIL 164


>gi|323336602|gb|EGA77868.1| Rex2p [Saccharomyces cerevisiae Vin13]
          Length = 208

 Score = 35.3 bits (79), Expect = 8.5,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 8/58 (13%)

Query: 17 TGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          TGLD  NDRIIEI  +    +         + +  ++  +                  
Sbjct: 2  TGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMBKMNEWCIEHH 59


>gi|229588067|ref|YP_002870186.1| oligoribonuclease [Pseudomonas fluorescens SBW25]
 gi|312958644|ref|ZP_07773164.1| exonuclease [Pseudomonas fluorescens WH6]
 gi|229359933|emb|CAY46787.1| oligoribonuclease [Pseudomonas fluorescens SBW25]
 gi|311287187|gb|EFQ65748.1| exonuclease [Pseudomonas fluorescens WH6]
          Length = 180

 Score = 35.3 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+   D IIE+ 
Sbjct: 10 IDLEMTGLNPDTDVIIEMA 28


>gi|148244280|ref|YP_001218974.1| oligoribonuclease [Candidatus Vesicomyosocius okutanii HA]
 gi|146326107|dbj|BAF61250.1| oligoribonuclease [Candidatus Vesicomyosocius okutanii HA]
          Length = 181

 Score = 35.3 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL  + D IIEI 
Sbjct: 11 IDLEMTGLTPEKDVIIEIA 29


>gi|145478451|ref|XP_001425248.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392317|emb|CAK57850.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1241

 Score = 35.3 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 58/218 (26%), Gaps = 12/218 (5%)

Query: 32   VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
            + +        T    +    R N         +       +P     +         + 
Sbjct: 988  ILVEKAILILETIHSQIPQEYRSN---ITYDIKLNYIERNMRPYIDYDYYISRILTGYEI 1044

Query: 92   AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT 151
             + +      +V            +  +  ++     + +    S          R  +T
Sbjct: 1045 IKKMHMKHYQEVFNSADMDLDNMMEYQEFKKLYYYFEVNQGNQTSISVMEREFLSRCDLT 1104

Query: 152  ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK-RDK 210
             ++  +     D  L   +   +       NF    +E    K  +    N + +K R +
Sbjct: 1105 ANNEGEKAMSFDRFLTFSIEQNLFSEEKFTNFANSVDEQDPIKTLEDLYRNWNDVKLRLE 1164

Query: 211  PLFTRITKEELDEHDKTIQTLGK--------NAIWDRY 240
                   +EE++ +   I+ L K         +IW  Y
Sbjct: 1165 NRVQYAVEEEIEYYLSVIKKLDKALTCEDKRQSIWISY 1202


>gi|118602163|ref|YP_903378.1| oligoribonuclease [Candidatus Ruthia magnifica str. Cm
          (Calyptogena magnifica)]
 gi|166216583|sp|A1AVF0|ORN_RUTMC RecName: Full=Oligoribonuclease
 gi|118567102|gb|ABL01907.1| Exonuclease, RNase T and DNA polymerase III [Candidatus Ruthia
          magnifica str. Cm (Calyptogena magnifica)]
          Length = 180

 Score = 35.3 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
            K   I  D+E TGL  + D IIEI 
Sbjct: 2  NKKTNLIWIDLEMTGLIPEKDVIIEIA 28


>gi|315655740|ref|ZP_07908638.1| oligoribonuclease [Mobiluncus curtisii ATCC 51333]
 gi|315489804|gb|EFU79431.1| oligoribonuclease [Mobiluncus curtisii ATCC 51333]
          Length = 212

 Score = 35.3 bits (79), Expect = 8.8,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCP 50
           D E TGLD   D +IE+  +         +    + + P
Sbjct: 18 IDCEMTGLDLHVDELIEVAVIVTDAELNPLDSGIDLLIKP 57


>gi|300814058|ref|ZP_07094341.1| hypothetical protein HMPREF9131_1233 [Peptoniphilus sp. oral
          taxon 836 str. F0141]
 gi|300511715|gb|EFK38932.1| hypothetical protein HMPREF9131_1233 [Peptoniphilus sp. oral
          taxon 836 str. F0141]
          Length = 299

 Score = 35.3 bits (79), Expect = 8.8,   Method: Composition-based stats.
 Identities = 13/20 (65%), Positives = 15/20 (75%)

Query: 14 IETTGLDSKNDRIIEIGAVE 33
          IETTGL  KND II IG ++
Sbjct: 19 IETTGLSIKNDVIIAIGIIK 38


>gi|331083823|ref|ZP_08332932.1| hypothetical protein HMPREF0992_01856 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403248|gb|EGG82808.1| hypothetical protein HMPREF0992_01856 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 374

 Score = 34.9 bits (78), Expect = 8.8,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 5/175 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCPNGRKNSPEALKLHGITDE 68
            FDIETTGL  K   +  IG +         + +Q   FL     +    AL        
Sbjct: 31  FFDIETTGLSPKTSHVFLIGLISF---QPDTKEWQLIQFLQEQDNEEEERALLETFSAFA 87

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             + +    +  S    +   +  +    N       ++   + +            T  
Sbjct: 88  KSRTQLIHFNGSSFDIPYLVSRYEKHQLPNPFSHKSSLDLYREFLRMPAFFRQMPNHTQK 147

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                   +R DL S  +      S+        +  LL   Y  ++   S +  
Sbjct: 148 AFEELTSYTRKDLLSGKEMIKFYHSYTKSPSKEKEDLLLQHNYDDLVGMLSVLPL 202


>gi|297538700|ref|YP_003674469.1| Exonuclease RNase T and DNA polymerase III [Methylotenera sp.
          301]
 gi|297258047|gb|ADI29892.1| Exonuclease RNase T and DNA polymerase III [Methylotenera sp.
          301]
          Length = 186

 Score = 34.9 bits (78), Expect = 8.8,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E +GL   +DRI+E+ AV
Sbjct: 16 LDMEMSGLLPDSDRILELAAV 36


>gi|66822265|ref|XP_644487.1| RNA exonuclease 2 [Dictyostelium discoideum AX4]
 gi|66822817|ref|XP_644763.1| RNA exonuclease 2 [Dictyostelium discoideum AX4]
 gi|122057700|sp|Q556Y2|ORN_DICDI RecName: Full=Probable oligoribonuclease; AltName: Full=RNA
          exonuclease 2 homolog
 gi|60472610|gb|EAL70561.1| RNA exonuclease 2 [Dictyostelium discoideum AX4]
 gi|60472946|gb|EAL70895.1| RNA exonuclease 2 [Dictyostelium discoideum AX4]
          Length = 190

 Score = 34.9 bits (78), Expect = 8.8,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +I +   R +  D+E TGLD   D I+E+  V
Sbjct: 11 VINERSKRMVWVDLEMTGLDISKDVILEMAIV 42


>gi|296087843|emb|CBI35099.3| unnamed protein product [Vitis vinifera]
          Length = 520

 Score = 34.9 bits (78), Expect = 8.9,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 17/221 (7%)

Query: 9   KIVFDIETT---GLDSKNDRIIEIGAVELLDYSKTNR---TFQVFLCPNGR------KNS 56
            +V D E T   G +     IIE  +V +   S T +    FQ ++ P            
Sbjct: 246 FVVIDFEATCDKGKNPHPQEIIEFPSVIVS--SVTGQLEACFQTYVRPTCNQILSDFCKD 303

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH-NAKFDVGFINAELQRINK 115
              ++   +       +                 N   +   N    V   +    +  +
Sbjct: 304 LTGIQQIQVDRGVTLSEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLESECRFKKIR 363

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P   +R I+     R        +L    +  G+    R+ H  L D+   + +   +M
Sbjct: 364 KPPYFNRWINLKVPFREVFGGVWCNLKEAVEMAGLAWQGRA-HCGLDDAKNTARLLAFLM 422

Query: 176 VGGSQINFGFKTN-EDRFFKEEKKTVPNISLLKRDKPLFTR 215
             G + +       +     E  K  P +S      P   R
Sbjct: 423 HRGFKFSITNSLMWQATDHPESWKQSPELSSFPEYHPQKLR 463


>gi|251780447|ref|ZP_04823367.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243084762|gb|EES50652.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 204

 Score = 34.9 bits (78), Expect = 8.9,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 8/134 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQVFLCPNGRKNSPEALKL 62
           M+ + FD ETT +   +  I ++  + +         T + F   +  +    S + +  
Sbjct: 1   MKLLFFDTETTSIKPGS--ICQLSYITVDASSKPQITTGKNFFFTV--DEMNPSAQEIHG 56

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +   +      +       +     +    I HN  FD+ F+  EL  + +D L    
Sbjct: 57  FSLEKLYELSDGQYFEDLVPEFFKDFIEADFLIGHNVNFDIRFLKHELSLLGEDFLPKHS 116

Query: 123 IIDTLSIARRKHPS 136
               +         
Sbjct: 117 FCTMIYYKDICKMP 130


>gi|225463988|ref|XP_002263189.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 415

 Score = 34.9 bits (78), Expect = 8.9,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 17/221 (7%)

Query: 9   KIVFDIETT---GLDSKNDRIIEIGAVELLDYSKTNR---TFQVFLCPNGR------KNS 56
            +V D E T   G +     IIE  +V +   S T +    FQ ++ P            
Sbjct: 141 FVVIDFEATCDKGKNPHPQEIIEFPSVIVS--SVTGQLEACFQTYVRPTCNQILSDFCKD 198

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH-NAKFDVGFINAELQRINK 115
              ++   +       +                 N   +   N    V   +    +  +
Sbjct: 199 LTGIQQIQVDRGVTLSEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLESECRFKKIR 258

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P   +R I+     R        +L    +  G+    R+ H  L D+   + +   +M
Sbjct: 259 KPPYFNRWINLKVPFREVFGGVWCNLKEAVEMAGLAWQGRA-HCGLDDAKNTARLLAFLM 317

Query: 176 VGGSQINFGFKTN-EDRFFKEEKKTVPNISLLKRDKPLFTR 215
             G + +       +     E  K  P +S      P   R
Sbjct: 318 HRGFKFSITNSLMWQATDHPESWKQSPELSSFPEYHPQKLR 358


>gi|213618910|ref|ZP_03372736.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 218

 Score = 34.9 bits (78), Expect = 9.1,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 14/152 (9%)

Query: 26  IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85
           I+EI +V+++D +         + P+ R  +P+A+ +H IT+  + DKP    +      
Sbjct: 2   IVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMVADKPWIEDVI----- 54

Query: 86  FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLC 145
                +  ++AHNA FD   +        + P +    +            S   L    
Sbjct: 55  PLYYGSEWYVAHNASFDRRVLP-------ELPGEWICTMKLSRRLWPGIKYSNMALYKSR 107

Query: 146 KRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           K    T      H AL D ++ + + I +M  
Sbjct: 108 KLSVQTPPGLHHHRALYDCYITAALLIDIMRT 139


>gi|46125619|ref|XP_387363.1| hypothetical protein FG07187.1 [Gibberella zeae PH-1]
          Length = 615

 Score = 34.9 bits (78), Expect = 9.2,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
           + +V D+E       +D++ EI  VE +       
Sbjct: 527 KLVVLDVE---FSPVSDQVWEIAVVEFVSGKVVIN 558


>gi|42782602|ref|NP_979849.1| exonuclease [Bacillus cereus ATCC 10987]
 gi|42738528|gb|AAS42457.1| exonuclease family protein [Bacillus cereus ATCC 10987]
          Length = 281

 Score = 34.9 bits (78), Expect = 9.3,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 67/219 (30%), Gaps = 13/219 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKND---RIIEIGAVELLD--YSKTNRTFQVFLCPNGR--KNS 56
           KN    IVFDIE      K+D    I++IGAV++           F   + P  R  +++
Sbjct: 2   KNTTHFIVFDIERNFRPYKSDDPSEIVDIGAVKIEASTMKVIGE-FSELVKPGARLTRHT 60

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            +   +       ++  P     F +F    +                     +     +
Sbjct: 61  TKLTGITKKDLMNVEKFPQIIERFIQFIGEDSIFVTWGKEDYRFLVHDCTLHGVDCPCME 120

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH---GALLDSHLLSDVYIK 173
                 +   +  A  +       L S  ++ G+T   +       A   +++L   Y +
Sbjct: 121 KERRIDLQKFVFQAYEELFEHTPSLQSAVEQLGLTWEGKQHRALADAENTANILLKAYSE 180

Query: 174 --MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
             +     +          +  ++ KK +      +  K
Sbjct: 181 RDITKRYKRHGELELVENGKLTEKAKKKMRKWVFKEMRK 219


>gi|298345320|ref|YP_003718007.1| exoribonuclease II [Mobiluncus curtisii ATCC 43063]
 gi|304390877|ref|ZP_07372829.1| oligoribonuclease [Mobiluncus curtisii subsp. curtisii ATCC
          35241]
 gi|298235381|gb|ADI66513.1| exoribonuclease II [Mobiluncus curtisii ATCC 43063]
 gi|304325760|gb|EFL93006.1| oligoribonuclease [Mobiluncus curtisii subsp. curtisii ATCC
          35241]
          Length = 212

 Score = 34.9 bits (78), Expect = 9.4,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCP 50
           D E TGLD   D +IE+  +         +    + + P
Sbjct: 18 IDCEMTGLDLHVDELIEVAVIVTDAELNPLDSGIDLLIKP 57


>gi|152967659|ref|YP_001363443.1| oligoribonuclease [Kineococcus radiotolerans SRS30216]
 gi|151362176|gb|ABS05179.1| Exonuclease RNase T and DNA polymerase III [Kineococcus
          radiotolerans SRS30216]
          Length = 206

 Score = 34.9 bits (78), Expect = 9.4,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51
          R +  D E TGL    D ++E+  +    D +       V + P 
Sbjct: 9  RIVWIDCEMTGLSLTEDALVEVAVLVTDADLNVLGDGVDVVIKPP 53


>gi|294626343|ref|ZP_06704945.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294665158|ref|ZP_06730459.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292599344|gb|EFF43479.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292605071|gb|EFF48421.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 481

 Score = 34.9 bits (78), Expect = 9.5,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 3/118 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65
            + +D+ET G D +  RI +  AV               F+ P      +    +     
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRMIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
               L++  + +  FS   +         + +N+              N         
Sbjct: 65  PQHALREGVTEAEAFSRIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYEREW 122


>gi|19745746|ref|NP_606882.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS8232]
 gi|19747886|gb|AAL97381.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
           MGAS8232]
          Length = 833

 Score = 34.9 bits (78), Expect = 9.6,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 70/190 (36%), Gaps = 20/190 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGA------VELLDYSKTNRTFQVFLCPNGRK 54
           M +K   +  V D+E TG            A      + ++  +K   +++  + P+   
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPN--------ASIIQVGIVIIQGNKIMDSYETDVNPH-ES 65

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
                + L GITD+ L   P F  +    +    +    ++AHN KFD   +        
Sbjct: 66  LDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA--EALFL 121

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +        +DT+ +A+   P       S   R  + I     H A+ D+   + +++++
Sbjct: 122 EGYELTIPRVDTVELAQLFFPRFEKYNLSHLSRQ-LNIDLAEAHTAIADARATAILFLRL 180

Query: 175 MVGGSQINFG 184
           +     +   
Sbjct: 181 LQKIESLPIE 190


>gi|294501668|ref|YP_003565368.1| exonuclease (sporulation inhibitor KapD) [Bacillus megaterium QM
           B1551]
 gi|294351605|gb|ADE71934.1| exonuclease (sporulation inhibitor KapD) [Bacillus megaterium QM
           B1551]
          Length = 204

 Score = 34.9 bits (78), Expect = 9.7,   Method: Composition-based stats.
 Identities = 20/199 (10%), Positives = 52/199 (26%), Gaps = 16/199 (8%)

Query: 9   KIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPE 58
            +  D E T         G   +   IIE+G V + +    +R F  ++ P    K +  
Sbjct: 7   YLFIDFEFTMPEYKGFPKGFFPE---IIEVGLVFVKNQEIIDR-FSSYVQPTHFTKLTER 62

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                 I    + +  +   +      + +     W   + K                  
Sbjct: 63  CKSFLHIEQNQVNEGITLEQLVQRLGMYKHSTIITWGNMDMKVLRQCCQKNKVPFPFAGK 122

Query: 119 DPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +    ++       ++ +   +       +  G            L+   L +   + + 
Sbjct: 123 EIDLSMEYKRFFGDQNQTGLWKAVQEYGKEGTGKHHCALDDAMTTLNIFKLVEKDKRYLQ 182

Query: 177 GGSQINFGFKTNEDRFFKE 195
                  G + +  +   +
Sbjct: 183 KPEPTTIGDRIDFSKVLNK 201


>gi|291520945|emb|CBK79238.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Coprococcus catus GD/7]
          Length = 218

 Score = 34.9 bits (78), Expect = 9.8,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 22/142 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRI---------------IEIGAVELLDYSKTNRTFQVFLCPN 51
           M  +V D+E         R+               I+IGAV L +  K   T + ++ P 
Sbjct: 1   MFYLVIDLEM-------CRVPRDYRNKAYHYAYETIQIGAVLLNEEFKQVGTIREYVHPE 53

Query: 52  GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
                P   KL GI +  +K  P          D+  ++  +    +       ++    
Sbjct: 54  HGVIDPFIEKLTGIKNSQVKKAPCIGEALVHMIDWIGDREYKVYTWSESDRNQLLHEITA 113

Query: 112 RINKDPLDPSRIIDTLSIARRK 133
           +   D    + +++   +  + 
Sbjct: 114 KQITDESVDAFMMEDRWVDYQM 135


>gi|170723851|ref|YP_001751539.1| oligoribonuclease [Pseudomonas putida W619]
 gi|169761854|gb|ACA75170.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
          W619]
          Length = 180

 Score = 34.9 bits (78), Expect = 9.8,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +N    I  D+E TGLD  +D IIE+ 
Sbjct: 2  QNPQNLIWIDLEMTGLDPDSDVIIEMA 28


>gi|331000795|ref|ZP_08324441.1| oligoribonuclease [Parasutterella excrementihominis YIT 11859]
 gi|329570323|gb|EGG52056.1| oligoribonuclease [Parasutterella excrementihominis YIT 11859]
          Length = 204

 Score = 34.9 bits (78), Expect = 9.8,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 16/20 (80%)

Query: 13 DIETTGLDSKNDRIIEIGAV 32
          D+E TGL+ + +RI+E+ AV
Sbjct: 35 DLEMTGLEPQINRILEMAAV 54


>gi|329888661|ref|ZP_08267259.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568]
 gi|328847217|gb|EGF96779.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568]
          Length = 228

 Score = 34.9 bits (78), Expect = 9.8,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS 38
           D ETTG++     +IE G  +L +  
Sbjct: 2  IDFETTGMEPPTAEVIEYGWCDLTNDG 28


>gi|260663140|ref|ZP_05864032.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
 gi|260552332|gb|EEX25383.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
          Length = 361

 Score = 34.9 bits (78), Expect = 9.8,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 64/197 (32%), Gaps = 5/197 (2%)

Query: 12  FDIE-TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP--EALKLHGITDE 68
            D+E  T   ++    +EIG V+  +  K  + F  F+     +       +    +T +
Sbjct: 19  LDLEFATHKKTREHLPLEIGVVKYQNGRKVGKQFHRFVYWADAEADDILRGIDYANVTYK 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             K +  +  I ++  +F  + +      N   D+  +   ++      +D   +     
Sbjct: 79  TYKKQGQWDKIVADLLNFI-DFSLPIGGWNVHGDLQVLLEAIKNHGGPLVDEKAVCCFEV 137

Query: 129 IARRKHPSSRNDLNSLCKRYG-ITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
                      +  SL      +     + H AL D  L + VY  ++      ++    
Sbjct: 138 DELVSWLGELPNKPSLRGVGRLLGFDVSNMHHALSDVLLTAQVYDYLVALPEIASWKKAP 197

Query: 188 NEDRFFKEEKKTVPNIS 204
              +  KE  +T     
Sbjct: 198 TNTKSTKEAGRTKATKK 214


>gi|89894542|ref|YP_518029.1| sporulation inhibitor KapD [Desulfitobacterium hafniense Y51]
 gi|89333990|dbj|BAE83585.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 222

 Score = 34.9 bits (78), Expect = 9.8,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 47/184 (25%), Gaps = 14/184 (7%)

Query: 6   KMRKIVFDIETTGLDSKND---------RIIEIGAVELL-DYSK-TNRTFQVFLCPNGRK 54
           KM  +V D E                   IIE+GA  L  +     ++TF  F+ P    
Sbjct: 13  KMDFLVVDFE---FSVPQSYGKPRAWFPEIIEVGATVLDSNGKLALDKTFNAFVKPRFWP 69

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              E         +   D+        +         A  +A          N   +   
Sbjct: 70  RLAEESYGITGIRQEDVDQGILLEEAIQHLQKLAHPEAYVVAWGDADRKILGNVCEKYGL 129

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           K P      ID     +                          H AL D+   + V  +M
Sbjct: 130 KYPFVWENYIDLAEQYKHYRSLDHLISLKKAIEENSIEQIGILHSALDDAINAAQVMARM 189

Query: 175 MVGG 178
           M  G
Sbjct: 190 MSEG 193


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.310    0.112    0.328 

Lambda     K      H
   0.267   0.0347    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,518,002,858
Number of Sequences: 14124377
Number of extensions: 62807823
Number of successful extensions: 227278
Number of sequences better than 10.0: 6879
Number of HSP's better than 10.0 without gapping: 4960
Number of HSP's successfully gapped in prelim test: 1919
Number of HSP's that attempted gapping in prelim test: 218748
Number of HSP's gapped (non-prelim): 7066
length of query: 245
length of database: 4,842,793,630
effective HSP length: 135
effective length of query: 110
effective length of database: 2,936,002,735
effective search space: 322960300850
effective search space used: 322960300850
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 79 (35.3 bits)