BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter asiaticus str. psy62] (245 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter asiaticus str. psy62] gi|254040495|gb|ACT57291.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter asiaticus str. psy62] Length = 245 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 245/245 (100%), Positives = 245/245 (100%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL Sbjct: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP Sbjct: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ Sbjct: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY Sbjct: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 Query: 241 ISSNQ 245 ISSNQ Sbjct: 241 ISSNQ 245 >gi|315122041|ref|YP_004062530.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495443|gb|ADR52042.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 244 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 199/244 (81%), Positives = 222/244 (90%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + KNKMRKI+FDIETTGLD KNDRIIEIGAVELLDYSKT RTFQVFL P+G+K +PEALK Sbjct: 1 MLKNKMRKIIFDIETTGLDKKNDRIIEIGAVELLDYSKTGRTFQVFLSPDGKKVNPEALK 60 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 LHGITDEFL+DKP FS+IF EFWDFFN++NAEWIAHNAKFDVGFINAELQRINKDPLDPS Sbjct: 61 LHGITDEFLRDKPFFSAIFPEFWDFFNDKNAEWIAHNAKFDVGFINAELQRINKDPLDPS 120 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 RI+DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL+DVY++MMVGGSQI Sbjct: 121 RIVDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLADVYVQMMVGGSQI 180 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 +FGFK NED F +++ NIS LKR+KPL RIT+EE+ EH KTIQ +GKN+IW+RY Sbjct: 181 DFGFKANEDFLFGKDENIAQNISFLKREKPLSLRITEEEIAEHTKTIQMIGKNSIWNRYT 240 Query: 242 SSNQ 245 SSNQ Sbjct: 241 SSNQ 244 >gi|237816422|ref|ZP_04595415.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A] gi|237788489|gb|EEP62704.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A] Length = 248 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 107/243 (44%), Positives = 153/243 (62%), Gaps = 4/243 (1%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 + R + MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL Sbjct: 9 LRRGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDAL 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGI++E L DKP F+ I EF +F + +AHNA FD+GFINAEL R+++ + Sbjct: 69 AVHGISNEQLLDKPVFAEILDEFLEFIDGAR--LVAHNAMFDLGFINAELARLDQAEITS 126 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I+DTL++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+++ G Q Sbjct: 127 EHIVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIG-GKQ 185 Query: 181 INFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 G + + + L R +PL RI+ E H ++ +G A+W + Sbjct: 186 TALGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKK 245 Query: 240 YIS 242 Y+S Sbjct: 246 YLS 248 >gi|225626451|ref|ZP_03784490.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo] gi|225618108|gb|EEH15151.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo] Length = 248 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 107/243 (44%), Positives = 153/243 (62%), Gaps = 4/243 (1%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 + R + MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL Sbjct: 9 LRRGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDAL 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGI++E L DKP F+ I EF +F + +AHNA FD+GFINAEL R+++ + Sbjct: 69 AVHGISNEQLLDKPVFAEILDEFLEFIDGAR--LVAHNAMFDLGFINAELARLDQAEITS 126 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I+DTL++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+++ G Q Sbjct: 127 EHIVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIG-GKQ 185 Query: 181 INFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 G + + + L R +PL RI+ E H ++ +G A+W + Sbjct: 186 TALGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKK 245 Query: 240 YIS 242 Y+S Sbjct: 246 YLS 248 >gi|126730109|ref|ZP_01745921.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37] gi|126709489|gb|EBA08543.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37] Length = 229 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 102/234 (43%), Positives = 144/234 (61%), Gaps = 7/234 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL ++ T T+ ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGFEPEQGDRIVEIGAVELFNHVPTGETYHQYINPE-RSMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I EF F + ++ + HNA FDV F+NAEL+ N+ L ID Sbjct: 60 GDDFLRDKPVFAKIVDEFRTFIGD--SKLVIHNAAFDVKFLNAELRWANRPTLAKDCAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IARRK P S L++LC+R+GI S R+ HGALLDS +L++VY++++ G Q +FG Sbjct: 118 TLDIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLELIG-GKQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + E TV N R PL +R+T E H ++ LG+NAIW+R Sbjct: 177 TSASNTPSVGE--TVTNWRPKPRSTPLPSRLTDTEKAAHAAFVEKLGENAIWNR 228 >gi|17988339|ref|NP_540973.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. 16M] gi|17984115|gb|AAL53237.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str. 16M] Length = 248 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 107/243 (44%), Positives = 153/243 (62%), Gaps = 4/243 (1%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 + R + MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL Sbjct: 9 LRRGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDAL 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGI++E L DKP F+ I EF +F + +AHNA FD+GFINAEL R+++ + Sbjct: 69 AVHGISNEQLLDKPVFAEILDEFLEFIDGAR--LVAHNAMFDLGFINAELARLDQAEITS 126 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I+DTL++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+++ G Q Sbjct: 127 EHIVDTLALARRKHPIGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIG-GKQ 185 Query: 181 INFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 G + + + L R +PL RI+ E H ++ +G A+W + Sbjct: 186 TALGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKK 245 Query: 240 YIS 242 Y+S Sbjct: 246 YLS 248 >gi|23502919|ref|NP_699046.1| DNA polymerase III subunit epsilon [Brucella suis 1330] gi|62290915|ref|YP_222708.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str. 9-941] gi|82700826|ref|YP_415400.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar Abortus 2308] gi|148559666|ref|YP_001259876.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840] gi|161619985|ref|YP_001593872.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365] gi|163844089|ref|YP_001628493.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445] gi|189025128|ref|YP_001935896.1| DNA polymerase III subunit epsilon [Brucella abortus S19] gi|254690204|ref|ZP_05153458.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str. 870] gi|254694694|ref|ZP_05156522.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str. Tulya] gi|254696321|ref|ZP_05158149.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str. 86/8/59] gi|254700703|ref|ZP_05162531.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513] gi|254705074|ref|ZP_05166902.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686] gi|254709049|ref|ZP_05170860.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94] gi|254713525|ref|ZP_05175336.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1] gi|254716120|ref|ZP_05177931.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1] gi|254731237|ref|ZP_05189815.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str. 292] gi|256030574|ref|ZP_05444188.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M292/94/1] gi|256060036|ref|ZP_05450218.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33] gi|256158570|ref|ZP_05456460.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1] gi|256253981|ref|ZP_05459517.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94] gi|256258458|ref|ZP_05463994.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str. C68] gi|260169479|ref|ZP_05756290.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99] gi|260546177|ref|ZP_05821917.1| DNA polymerase III [Brucella abortus NCTC 8038] gi|260567458|ref|ZP_05837928.1| DNA polymerase III [Brucella suis bv. 4 str. 40] gi|260755744|ref|ZP_05868092.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str. 870] gi|260758968|ref|ZP_05871316.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str. 292] gi|260760692|ref|ZP_05873035.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str. 86/8/59] gi|260884770|ref|ZP_05896384.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str. C68] gi|261215021|ref|ZP_05929302.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str. Tulya] gi|261217890|ref|ZP_05932171.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1] gi|261221121|ref|ZP_05935402.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94] gi|261316547|ref|ZP_05955744.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94] gi|261321260|ref|ZP_05960457.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1] gi|261324012|ref|ZP_05963209.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33] gi|261751212|ref|ZP_05994921.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513] gi|261755776|ref|ZP_05999485.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686] gi|261759005|ref|ZP_06002714.1| DNA polymerase III [Brucella sp. F5/99] gi|265987621|ref|ZP_06100178.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M292/94/1] gi|265997081|ref|ZP_06109638.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1] gi|294851300|ref|ZP_06791973.1| DNA polymerase III [Brucella sp. NVSL 07-0026] gi|297247299|ref|ZP_06931017.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str. B3196] gi|23348951|gb|AAN30961.1| DNA polymerase III, epsilon subunit [Brucella suis 1330] gi|62197047|gb|AAX75347.1| DnaQ, DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str. 9-941] gi|82616927|emb|CAJ12028.1| Beta tubulin:DNA polymerase III, epsilon subunit:Exonuclease:DNA polymerase 3, epsilon subunit [Brucella melitensis biovar Abortus 2308] gi|148370923|gb|ABQ60902.1| DNA polymerase III, epsilon subunit [Brucella ovis ATCC 25840] gi|161336796|gb|ABX63101.1| DNA polymerase III, epsilon subunit [Brucella canis ATCC 23365] gi|163674812|gb|ABY38923.1| DNA polymerase III, epsilon subunit [Brucella suis ATCC 23445] gi|189020700|gb|ACD73422.1| DNA polymerase III, epsilon subunit [Brucella abortus S19] gi|260096284|gb|EEW80160.1| DNA polymerase III [Brucella abortus NCTC 8038] gi|260156976|gb|EEW92056.1| DNA polymerase III [Brucella suis bv. 4 str. 40] gi|260669286|gb|EEX56226.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str. 292] gi|260671124|gb|EEX57945.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str. 86/8/59] gi|260675852|gb|EEX62673.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str. 870] gi|260874298|gb|EEX81367.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str. C68] gi|260916628|gb|EEX83489.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str. Tulya] gi|260919705|gb|EEX86358.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94] gi|260922979|gb|EEX89547.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1] gi|261293950|gb|EEX97446.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1] gi|261295770|gb|EEX99266.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94] gi|261299992|gb|EEY03489.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33] gi|261738989|gb|EEY26985.1| DNA polymerase III [Brucella sp. F5/99] gi|261740965|gb|EEY28891.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513] gi|261745529|gb|EEY33455.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686] gi|262551549|gb|EEZ07539.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1] gi|264659818|gb|EEZ30079.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M292/94/1] gi|294819889|gb|EFG36888.1| DNA polymerase III [Brucella sp. NVSL 07-0026] gi|297174468|gb|EFH33815.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str. B3196] Length = 234 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 4/237 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E L DKP F+ I EF +F + +AHNA FD+GFINAEL R+++ + I+DT Sbjct: 61 NEQLLDKPVFAEILDEFLEFIDGAR--LVAHNAMFDLGFINAELARLDQAEITSEHIVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+++ G Q G Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIG-GKQTALGLT 177 Query: 187 TNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + + + L R +PL RI+ E H ++ +G A+W +Y+S Sbjct: 178 MESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234 >gi|256370469|ref|YP_003107980.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915] gi|256000632|gb|ACU49031.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915] Length = 234 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 4/237 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E L DKP F+ I EF +F + +AHNA FD+GFINAEL R+++ + I+DT Sbjct: 61 NEQLLDKPVFAEILDEFLEFIDGAR--LVAHNAMFDLGFINAELARLDQAEITSEHIVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+++ G Q G Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIENSHRTLHGALLDAQILAEVYIELIG-GKQTALGLT 177 Query: 187 TNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + + + L R +PL RI+ E H ++ +G A+W +Y+S Sbjct: 178 MESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234 >gi|254718114|ref|ZP_05179925.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13] gi|265983066|ref|ZP_06095801.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13] gi|306839740|ref|ZP_07472542.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653] gi|306842813|ref|ZP_07475453.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2] gi|306843489|ref|ZP_07476090.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1] gi|264661658|gb|EEZ31919.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13] gi|306276180|gb|EFM57880.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1] gi|306287007|gb|EFM58518.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2] gi|306405200|gb|EFM61477.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653] Length = 234 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 4/237 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E L DKP F+ I EF +F + +AHNA FD+GFINAEL R+++ + I+DT Sbjct: 61 NEQLLDKPVFAEILDEFLEFIDGAR--LVAHNAMFDLGFINAELARLDQAEIASEHIVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+++ G Q G Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIG-GKQTALGLT 177 Query: 187 TNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + + + L R +PL RI+ E H ++ +G A+W +Y+S Sbjct: 178 MESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234 >gi|239833112|ref|ZP_04681441.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG 3301] gi|239825379|gb|EEQ96947.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG 3301] Length = 233 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 111/236 (47%), Positives = 151/236 (63%), Gaps = 3/236 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF ++ P GR+ EAL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELINKFPTGRTFHKYINPQGRQVHAEALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E L DKP+F+ I EF +FF+ A+ +AHNA FD+GFINAEL R+ + + R++DT Sbjct: 61 NEQLLDKPTFAEILDEFLEFFDG--AKLVAHNAMFDLGFINAELARLGQAEIQVERVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LCKRYGI HR+ HGALLDS +L++VYI+++ G Q G Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIENGHRTLHGALLDSEILAEVYIELIG-GKQTALGLS 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + I L R +PL RI+ EE H + LG AIW +Y+S Sbjct: 178 IGGTASGSNAGDSGAAIILAARPRPLAPRISDEERAAHAALVAGLGDKAIWKKYLS 233 >gi|225853502|ref|YP_002733735.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457] gi|256045675|ref|ZP_05448553.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. Rev.1] gi|256263016|ref|ZP_05465548.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9] gi|260562976|ref|ZP_05833462.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M] gi|265992096|ref|ZP_06104653.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. Rev.1] gi|225641867|gb|ACO01781.1| DNA polymerase III, epsilon subunit [Brucella melitensis ATCC 23457] gi|260152992|gb|EEW88084.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M] gi|263003162|gb|EEZ15455.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. Rev.1] gi|263092889|gb|EEZ17064.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9] gi|326410068|gb|ADZ67133.1| DNA polymerase III subunit epsilon [Brucella melitensis M28] gi|326539784|gb|ADZ87999.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90] Length = 234 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 4/237 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E L DKP F+ I EF +F + +AHNA FD+GFINAEL R+++ + I+DT Sbjct: 61 NEQLLDKPVFAEILDEFLEFIDGAR--LVAHNAMFDLGFINAELARLDQAEITSEHIVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+++ G Q G Sbjct: 119 LALARRKHPIGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIG-GKQTALGLT 177 Query: 187 TNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + + + L R +PL RI+ E H ++ +G A+W +Y+S Sbjct: 178 MESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234 >gi|153008185|ref|YP_001369400.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC 49188] gi|151560073|gb|ABS13571.1| DNA polymerase III, epsilon subunit [Ochrobactrum anthropi ATCC 49188] Length = 231 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 111/234 (47%), Positives = 150/234 (64%), Gaps = 3/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF ++ P GR+ PEAL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELINKFPTGRTFHKYINPQGRQVHPEALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E L DKP+F+ + EF +FF+ A+ +AHNA FD+GFINAEL R+ + + RIIDT Sbjct: 61 NEQLLDKPTFAEVLDEFLEFFDG--AKLVAHNAMFDLGFINAELARLGQAEIQSERIIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LCKRYGI HR+ HGALLDS +L++VYI+++ G Q G Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIENGHRTLHGALLDSEILAEVYIELIG-GKQTALGLS 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ++ I L R +PL RI+ E H + LG AIW +Y Sbjct: 178 MGGAVSGNNAGESGAAIVLAARPRPLAPRISDAERAAHAALVDKLGDKAIWKKY 231 >gi|84684641|ref|ZP_01012542.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Maritimibacter alkaliphilus HTCC2654] gi|84667620|gb|EAQ14089.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Rhodobacterales bacterium HTCC2654] Length = 230 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 93/234 (39%), Positives = 140/234 (59%), Gaps = 7/234 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D K DR++EIGAVEL ++ T RT+ ++ P R A +HG+ Sbjct: 1 MREIVLDTETTGFDPKTGDRMVEIGAVELFNHMPTGRTYHQYINPQ-RDMPEGAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++EFLKD P F+ I F +F + A+ + HNA FDV F+NAEL + + + ID Sbjct: 60 SEEFLKDYPVFADIADAFLEFIGD--AKLVIHNASFDVPFLNAELGWCKRRQIPMDQSID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IAR+K P + N L++LC+R+GI SHR+ HGALLDS +L++VY++++ G Q + Sbjct: 118 TLLIARKKFPGAGNSLDALCRRFGIDNSHRTLHGALLDSEILAEVYLELIG-GRQPDLVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + + R + L +RIT+EE H ++ LG +A+W + Sbjct: 177 GGGGSQT--SDTTQNEDWRPRPRPEALPSRITEEERAAHQAFVEKLGASALWSK 228 >gi|83942021|ref|ZP_00954483.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36] gi|83847841|gb|EAP85716.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36] Length = 228 Score = 167 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 96/233 (41%), Positives = 148/233 (63%), Gaps = 8/233 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL+ + T T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGNTYHQYINPE-RSMPAEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I +F DF + ++ + HNA FD+ F+NAEL+ + + + +D Sbjct: 60 GDDFLRDKPKFAQIGQDFLDFIGD--SKLVIHNAAFDIKFLNAELKWMGLPQIPWEQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR++ P S L++LC+R+GI + R+ HGALLDS +L+DVY++++ G Q +FG Sbjct: 118 TLAIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILADVYLELIG-GRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 T + K+E T P+ + R PL +RIT +E H + + LG +A+W Sbjct: 177 ST---KPEKKEGDTTPDWTPKPRPTPLPSRITPQEAAAHTEFVDKLGDSAVWK 226 >gi|83953070|ref|ZP_00961792.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1] gi|83842038|gb|EAP81206.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1] Length = 228 Score = 167 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 97/233 (41%), Positives = 148/233 (63%), Gaps = 8/233 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL+ + T T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGNTYHQYINPE-RSMPAEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL+DKP F+ I +F DF + ++ + HNA FD+ F+NAEL+ + + + +D Sbjct: 60 GDEFLRDKPKFAQIGQDFLDFIGD--SKLVIHNAAFDIKFLNAELKWMGLPQIPWEQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR++ P S L++LC+R+GI + R+ HGALLDS +L+DVY++++ G Q +FG Sbjct: 118 TLAIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILADVYLELIG-GRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 T + K+E T P+ + R PL +RIT +E H + + LG +A+W Sbjct: 177 ST---KPEKKEGDTTPDWTPKPRPTPLPSRITPQEAAAHTEFVDKLGDSAVWK 226 >gi|83950782|ref|ZP_00959515.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Roseovarius nubinhibens ISM] gi|83838681|gb|EAP77977.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Roseovarius nubinhibens ISM] Length = 231 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 97/235 (41%), Positives = 139/235 (59%), Gaps = 7/235 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVEL ++ T T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPHSGDRIVEIGAVELFNHMPTGETYHQYINPE-RSMPQEAFQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F I F DF + A+ I HNA FD+ F+NAEL + + + ID Sbjct: 60 GDDFLRDKPVFKRIGQAFLDFIGD--AKLIIHNAAFDMKFLNAELGWMGLPQIPWEQAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IARR+ P S L++LC+R+ I S R+ HGALLDS +L++VY++++ G Q +F Sbjct: 118 TLEIARRRFPGSPASLDALCRRFNIDNSSRTLHGALLDSEILAEVYLELIG-GRQPDFSL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 K E E + + N R PL +R+T+ E + H + +G AIW +Y Sbjct: 177 KVVEKAP--EPGEDMGNWRPKPRPTPLPSRLTEAEKNAHATFVGGMGDTAIWRKY 229 >gi|49473693|ref|YP_031735.1| DNA polymerase III epsilon chain [Bartonella quintana str. Toulouse] gi|49239196|emb|CAF25512.1| DNA polymerase III epsilon chain [Bartonella quintana str. Toulouse] Length = 235 Score = 165 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 102/232 (43%), Positives = 148/232 (63%), Gaps = 3/232 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD + DRIIEIG VE++D T + F V+L P G S EA+ +HG+T Sbjct: 1 MREIIFDTETTGLDKEKDRIIEIGCVEMIDRYLTGKRFHVYLNPQGVVISDEAVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LK++ SFS I E +F + AHNA FD+GF+NAEL R+NK + I+DT Sbjct: 61 NERLKNEKSFSDIADELLEFISGATMV--AHNASFDIGFLNAELGRVNKPLISVDNILDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRK P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+++ G Q GF+ Sbjct: 119 LAMARRKFPMGPNSLDVLCKRFGIDNSHRVFHGALLDAEILADVYIELIG-GKQGVLGFE 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 ++ + +++ R +PL R++ +E H I+ +G+ A+W+ Sbjct: 178 NSKSVEQDSQNDKNALLAVKVRPQPLSPRLSAQEKIMHADFIKKIGEKALWN 229 >gi|15963758|ref|NP_384111.1| DNA polymerase III subunit epsilon [Sinorhizobium meliloti 1021] gi|307302561|ref|ZP_07582318.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C] gi|307316108|ref|ZP_07595552.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83] gi|15072933|emb|CAC41392.1| Probable DNA polymerase III, epsilon chain [Sinorhizobium meliloti 1021] gi|306897948|gb|EFN28690.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83] gi|306903231|gb|EFN33821.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C] Length = 242 Score = 165 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 113/239 (47%), Positives = 157/239 (65%), Gaps = 4/239 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DR+IEIG +EL + T RT +++ P RK PEAL +HGIT Sbjct: 1 MREIIFDTETTGLDNREDRVIEIGGIELENQFPTGRTIHIYINPGERKVHPEALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDKP F+ + E DFF + AHNA FD+GFINAE +R+ P+ R+IDT Sbjct: 61 DEFLKDKPPFADVAQEIVDFFGDARWV--AHNATFDIGFINAEFERLGLPPIGSDRVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LC+RYG+ SHR++HGALLDS LL++VYI+M+ G Q G Sbjct: 119 LALARRKHPMGPNSLDALCRRYGVDNSHRTRHGALLDSELLAEVYIEMIG-GRQAALGLV 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245 E E P + ++ R++PL R+T+ E+ H + +G NAIW +Y ++ Sbjct: 178 VTEAGDRPIEADDGP-VVVVTRERPLRPRLTEAEIAAHAALVAKIGANAIWSKYSEADD 235 >gi|163745117|ref|ZP_02152477.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45] gi|161381935|gb|EDQ06344.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45] Length = 229 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 91/234 (38%), Positives = 140/234 (59%), Gaps = 8/234 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL+++ T T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELMNHMATGETYHQYINPE-RGMPEEAFQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I F DF ++ I HNA FD+ F+NAEL+ + + + +D Sbjct: 60 GDDFLRDKPKFAQIGKSFLDFIGT--SKLIIHNAAFDIKFLNAELRWMGLPQIPWEQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IAR++ P S L++LC+R+GI + R+ HGALLDS +L++VY++++ G Q +F Sbjct: 118 TLEIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILAEVYLELIG-GRQPDFAL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + +R E + R PL +R+T+ E H I LG + +W + Sbjct: 177 SSAPERKSGEPDT---RWTPKARPNPLPSRLTEAEAAAHADFIGKLGDDVLWKQ 227 >gi|114762190|ref|ZP_01441658.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Pelagibaca bermudensis HTCC2601] gi|114545214|gb|EAU48217.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Roseovarius sp. HTCC2601] Length = 229 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 97/234 (41%), Positives = 139/234 (59%), Gaps = 7/234 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL ++ T T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFEPETGDRIVEIGAVELYNHVPTGETYHQYINPE-RSMPQEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I EF +F + ++ + HNA FDV F+NAEL + L +D Sbjct: 60 GDDFLRDKPLFAQIVDEFLEFIGD--SKLVIHNATFDVKFLNAELGWSKRPLLPKDCAVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IARRK P S L++LC+R+GI S R+ HGALLDS +L+DVY++++ G Q + Sbjct: 118 TLAIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILADVYLELIG-GKQPDLVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 R N +R +PL RIT EE H ++ LG+ A+W R Sbjct: 177 SPV--RQGGGSDGGDDNWRPQRRPEPLSPRITDEEKAAHAAFVEKLGEAALWSR 228 >gi|89052685|ref|YP_508136.1| DNA polymerase III, epsilon subunit [Jannaschia sp. CCS1] gi|88862234|gb|ABD53111.1| DNA polymerase III epsilon subunit [Jannaschia sp. CCS1] Length = 231 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 91/237 (38%), Positives = 135/237 (56%), Gaps = 10/237 (4%) Query: 7 MRKIVFDIETTGLDSK---NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 MR+IV D ETTGL+ RI+EIGAVE+ + T +T+ ++ P R EA +H Sbjct: 1 MREIVLDTETTGLNPYDMPRHRIVEIGAVEIFNQVPTGKTYHQYIQPE-RDMPKEAFDVH 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI ++FL DKP F+ I +F DF HNA+FD+ F+NAEL+ K L + Sbjct: 60 GIGEDFLADKPIFADIAQDFLDFVGGDQMV--IHNAEFDMRFLNAELEWAGKHALPNDQA 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL IAR+K P S L++LC+R+GI S R KHGALLDS +L++VY+++ G Q +F Sbjct: 118 LDTLKIARQKFPGSPASLDALCRRFGIDNSAREKHGALLDSEILAEVYLELTG-GKQPDF 176 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 G ++ +++ + N R L TR++ E H + LG +W ++ Sbjct: 177 GLSQSKSTPTQQQDE---NWRPRPRPSALPTRLSDVEKAAHAAFVDALGDQTVWSKF 230 >gi|260467189|ref|ZP_05813366.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum WSM2075] gi|259029042|gb|EEW30341.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum WSM2075] Length = 241 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 101/238 (42%), Positives = 144/238 (60%), Gaps = 3/238 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLDS++DR+IE+G VEL++ T RTF ++ P GR EA +HGI+ Sbjct: 1 MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHAEAQAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L KP+F+ I E+ A+ +AHNA FD+GF+N E R+ +DP ++DT Sbjct: 61 AADLAGKPTFAEIVEEWLA--FTDGAKLVAHNATFDIGFLNVEFGRLGHPVIDPGLVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LC+RYGI + R+KHGALLDS LL++VYI+++ G Q Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNAKRTKHGALLDSELLAEVYIELIG-GKQAALILD 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 + + E I R PL R+T+ E H + TLG+ A+W + SS Sbjct: 178 SATAPAQRGENVRHIEIIAAVRPGPLLPRLTEAERAAHAAMVATLGEKALWLKATSSE 235 >gi|260429270|ref|ZP_05783247.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45] gi|260419893|gb|EEX13146.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45] Length = 230 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 94/234 (40%), Positives = 142/234 (60%), Gaps = 6/234 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL ++ T +T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFEPETGDRIVEIGAVELYNHVPTGKTYHQYINPE-RSMPNEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I +F +F + A+ + HNA FDV F+NAEL+ + L ID Sbjct: 60 GDDFLRDKPLFAQIVDDFLEFIGD--AKLVIHNAAFDVKFLNAELRWSKRPQLPRDCAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IARRK P S L++LC+R+GI S R+ HGALLDS +L+DVY++++ G Q + Sbjct: 118 TLEIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILADVYLELIG-GKQPDLVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + + + +R L +R+++EE H ++ LG NA+W R Sbjct: 177 TPAGQKS-GADSASAGDWRPQRRAVALPSRLSEEEKAAHAAFVEKLGANALWTR 229 >gi|254485580|ref|ZP_05098785.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101] gi|214042449|gb|EEB83087.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101] Length = 228 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 92/233 (39%), Positives = 146/233 (62%), Gaps = 8/233 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL+ + T +T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELMGHMATGKTYHQYINPE-RGMPDEAFQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I +F DF + ++ I HNA FD+ F+NAEL+ + + ++ +D Sbjct: 60 GDDFLRDKPKFAQIGQDFLDFIGD--SKLIIHNAAFDIKFLNAELKWMGLPQIPWAQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR++ P S L++LC+R+ I + R+ HGALLDS +L++VY++++ G Q +FG Sbjct: 118 TLAIARKRFPGSPASLDALCRRFNIDNTSRTLHGALLDSEILAEVYLELIG-GRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 R +E T + + R PL +RI+++E H + + LG A+W Sbjct: 177 SNQPQR---KEGDTSVDWTPKPRPNPLPSRISQDEAAAHAEFVSKLGDGAVWK 226 >gi|222084205|ref|YP_002542731.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84] gi|221721653|gb|ACM24809.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84] Length = 236 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 107/237 (45%), Positives = 151/237 (63%), Gaps = 6/237 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD+K DRIIEIG +EL ++ T +T +++ P RK P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNKADRIIEIGGIELFNHFPTGKTLHLYINPGDRKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE LKDKP F+ + E FF AHNA FD+GF+NAE R+ + P+ P +IDT Sbjct: 61 DESLKDKPPFADVADEILAFFEGAKWI--AHNATFDMGFVNAEFNRLGRPPILPDMVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LC+RYGI SHR++HGALLDS LL++VYI+M+ G Q G Sbjct: 119 LAMARRKHPMGPNSLDALCRRYGIDNSHRTRHGALLDSELLAEVYIEMIG-GRQTALGLG 177 Query: 187 TNEDRFFKEEKKTVPN---ISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ++ + + + +L R +PL R+++ E H + LG+ IW +Y Sbjct: 178 SSNGSSARSRQNNDVEEVVVEILARPQPLPGRVSETEEAAHAALVAKLGEKGIWSKY 234 >gi|21328725|gb|AAM48731.1| DNA polymerase III, epsilon subunit [uncultured marine proteobacterium] Length = 231 Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 96/234 (41%), Positives = 144/234 (61%), Gaps = 6/234 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL ++ T RT+ ++ P R A +HG+ Sbjct: 1 MREIVLDTETTGFEPSEGDRIVEIGAVELFNHLPTGRTYHQYINPE-RNMPEAAFNVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++EFL DKP F +I EF DF + ++ + HNA FD+ F+NAEL +N+ L + ID Sbjct: 60 SEEFLSDKPIFKNIAQEFIDFIAD--SKLVIHNASFDMKFLNAELGWVNRPALPNDQTID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IARRK P S L++LC+R+GI S R+ HGALLDS +L++VY++++ G Q + Sbjct: 118 TLAIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLELVG-GRQPDLVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 E + + P+ R KPL +R++ +E H+ I LG +A+W + Sbjct: 177 SGPEVK-TSTDGSQSPDWRPAPRPKPLASRLSDKEKAAHETFIAALGSDALWTK 229 >gi|150398405|ref|YP_001328872.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419] gi|150029920|gb|ABR62037.1| DNA polymerase III, epsilon subunit [Sinorhizobium medicae WSM419] Length = 242 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 157/239 (65%), Gaps = 4/239 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DR+IEIG +EL + T RT +++ P RK PEAL +HGIT Sbjct: 1 MREIIFDTETTGLDNREDRVIEIGGIELENQFPTGRTIHIYINPGDRKVHPEALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+FLKDKPSF+ I E DFF + AHNA FD+GFINAE +R+ P+ R+IDT Sbjct: 61 DDFLKDKPSFAEIAQEIVDFFGDARWV--AHNATFDMGFINAEFERLGLPPVGSDRVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRKHP N L++LC+RYGI SHR++HGALLDS LL++VYI+M+ G Q G Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTRHGALLDSELLAEVYIEMIG-GRQAALGLV 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245 E E P I ++ R++PL R+T+ E+ H + +G NAIW ++ + Sbjct: 178 MTETGGRSLEADDGPVI-IVGRERPLRPRLTEAEIAAHAALVSKIGANAIWAKFSEAED 235 >gi|27375751|ref|NP_767280.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA 110] gi|27348889|dbj|BAC45905.1| DNA polymerase III epsilon chain [Bradyrhizobium japonicum USDA 110] Length = 239 Score = 162 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 94/238 (39%), Positives = 134/238 (56%), Gaps = 8/238 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T +T+ V++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEMFNRMPTGQTYHVYINPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL KP F + F +F + A + HNA FD+ FINAEL RI + + +++D Sbjct: 60 SAEFLSTKPVFHEVADAFLEFIGD--APLVIHNASFDISFINAELDRIKRAAIPREQLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VY+ ++ Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQSQLLLA 177 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 E+ T +R PL RI+ E + H I TLG AIW+ ++ + Sbjct: 178 SEAEEIRINAAGDT----PRRQRPTPLAPRISDAEREAHRAFIATLGDKAIWNEFLPA 231 >gi|121602632|ref|YP_988343.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis KC583] gi|120614809|gb|ABM45410.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis KC583] Length = 234 Score = 162 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 100/234 (42%), Positives = 142/234 (60%), Gaps = 3/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD NDRIIEIG VE++D T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLDKDNDRIIEIGCVEMVDRYLTGRQFHVYLNPQGVIIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LK + F I E +F + AHNA FD+ F+NAEL+R+NK + +IDT Sbjct: 61 NERLKGEKKFDDIADELLEFIDGAMMI--AHNANFDISFLNAELKRVNKPLISIDNVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRK P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+++ G Q GF Sbjct: 119 LAMARRKFPMGPNSLDVLCKRFGIDNSHRILHGALLDAEILADVYIELIG-GKQGTLGFY 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + R E + + R + L R++++E H + +GK A+W+++ Sbjct: 178 NSNGRHLNTENGSNISYVFKIRPQALPPRLSEQEKSMHADLVNQIGKKALWNQF 231 >gi|13473785|ref|NP_105353.1| DNA polymerase III subunit epsilon [Mesorhizobium loti MAFF303099] gi|14024536|dbj|BAB51139.1| DNA polymerase III epsilon chain [Mesorhizobium loti MAFF303099] Length = 240 Score = 162 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 102/238 (42%), Positives = 149/238 (62%), Gaps = 4/238 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLDS++DR+IE+G VEL++ T RTF ++ P GR EA +HGI+ Sbjct: 1 MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHEEAQAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L KP+F+ I E+ A+ +AHNA FD+GF+N E R+ +DP R++DT Sbjct: 61 AADLAGKPTFAEIAEEWLT--FTDGAKLVAHNATFDIGFLNVEFGRLGHPVVDPGRVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LC+RYGI + R+KHGALLDS LL++VYI+++ G Q Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNTKRTKHGALLDSELLAEVYIELIG-GKQAALILD 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 + E + + I + +R +PL R+T+ E H + TLG+ A+W + SS Sbjct: 178 SATAPAQGENVRHIEII-VAERPRPLLPRLTEAERAAHAAMVATLGEKALWLKANSSE 234 >gi|209551510|ref|YP_002283427.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537266|gb|ACI57201.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 245 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 116/244 (47%), Positives = 157/244 (64%), Gaps = 8/244 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNVIHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK F+ + E FF + AHNA FD+GFINAEL RI P+ P R++DT Sbjct: 61 DEFLKDKKPFAEVAEEILTFFGDAKWI--AHNATFDMGFINAELARIGLPPILPERVLDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+M+ G Q FG Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIG-GRQAAFGLS 177 Query: 187 TN-----EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 R E+ V S+L+R +PL R+++ E H+ + LG+ IW +Y Sbjct: 178 MTATSGQNGRGDATEEDDVVIASVLERPRPLAPRLSQSEAQAHEALVAKLGEKGIWAKYA 237 Query: 242 SSNQ 245 S +Q Sbjct: 238 SLDQ 241 >gi|255264769|ref|ZP_05344111.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62] gi|255107104|gb|EET49778.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62] Length = 231 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 96/234 (41%), Positives = 140/234 (59%), Gaps = 6/234 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVELL++ T RT+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFEPNEGDRIVEIGAVELLNHVPTGRTYHQYINPK-RSMPKEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I F DF HNA FD+ F+NAEL +N+ L + +D Sbjct: 60 GDDFLRDKPFFADIAQAFVDFVGTDKMI--IHNAAFDMKFLNAELGWVNRPLLPMDQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IARR+ P S L++LC+R+GI S R+ HGALLDS +L++VY++++ G Q +FG Sbjct: 118 TLAIARRRFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLELIG-GRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 T K T N R PL + +++EE H + LG + +W + Sbjct: 177 NTAPKEEKKFVTSTTDN-RPKSRSTPLVSLLSEEEATAHSAFVDKLGDDVLWKK 229 >gi|307943432|ref|ZP_07658776.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4] gi|307773062|gb|EFO32279.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4] Length = 239 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 98/243 (40%), Positives = 148/243 (60%), Gaps = 11/243 (4%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I FD ETTGL+ + DR++EIG VEL ++ T +++ V++ P R EA ++HG+ Sbjct: 1 MREISFDTETTGLNPRGGDRLVEIGGVELWNHIPTGKSYHVYINPQ-RDMPEEAFRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++EFL DK F + EF DF + + HNA FD+GFIN EL+R + + +++D Sbjct: 60 SEEFLSDKQLFDQVADEFLDFVGDA--TLVIHNAAFDMGFINMELERSGRRIISNDQVLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP+ N L++LC RYGI S R KHGALLD+ +L++VY++++ G Q G Sbjct: 118 TLDLARRKHPTGPNSLDALCSRYGIDNSKRVKHGALLDAEILAEVYLELIG-GRQTALGL 176 Query: 186 KTNED------RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 +ED E + N + +R PL I++ E H I+ +G+NAIW++ Sbjct: 177 TADEDAQTASSGGSAAEPGELGNFNAKQRPSPLTRPISEAEFAAHKAFIEGMGENAIWNK 236 Query: 240 YIS 242 Y S Sbjct: 237 YGS 239 >gi|110635810|ref|YP_676018.1| DNA polymerase III subunit epsilon [Mesorhizobium sp. BNC1] gi|110286794|gb|ABG64853.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1] Length = 242 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 111/238 (46%), Positives = 159/238 (66%), Gaps = 4/238 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD + DR+IE+G VEL + T RT F+ P GR P+A +HGI+ Sbjct: 1 MREIIFDTETTGLDPREDRVIELGCVELANRFPTGRTLHYFINPQGRSVHPDAQAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D L KP F+ I EF +F + A+ +AHNA FD+GFINAE QR+ + +DP+R+IDT Sbjct: 61 DADLAGKPVFAEILDEFLEFIDG--AKLVAHNANFDIGFINAEFQRVGQPYIDPARVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L+IARRKHP N L++LC+RYGI SHR+KHGALLD+ LL++VYI++ G Q +FG + Sbjct: 119 LAIARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDAELLAEVYIELAG-GKQASFGLE 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 +E +V ++L R +PL +R+T EE H+ + +G+NA+W + + + Sbjct: 178 IATQGVAEETSSSVI-VALPPRPRPLRSRLTPEEQQAHEALVAGIGENALWRKLMPAE 234 >gi|84514924|ref|ZP_01002287.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Loktanella vestfoldensis SKA53] gi|84511083|gb|EAQ07537.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Loktanella vestfoldensis SKA53] Length = 228 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 95/234 (40%), Positives = 138/234 (58%), Gaps = 8/234 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL+ + T RT+ ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGFEPSEGDRIVEIGAVELIGHMPTGRTYHQYINPQ-RTMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL DKP F I +F F + A+ + HNA FD+ F+NAEL ++K L +R +D Sbjct: 60 GDDFLADKPLFKDIADDFLTFIGD--AKLVIHNAAFDMKFLNAELGWLHKPALPMNRAVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IARRK P S L++LC+R+GI + R+ HGALLDS +L++VY++++ G Q +F Sbjct: 118 TLMIARRKFPGSPASLDALCRRFGIDNAARTLHGALLDSEILAEVYLELIG-GRQPDFAL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 +K R PL +R+T EE H + +G +A+W R Sbjct: 177 A---QGSADSTQKNGAAWRAGPRPAPLASRLTAEETAAHTAFVNAMGDDAVWKR 227 >gi|218660611|ref|ZP_03516541.1| DNA polymerase III subunit epsilon [Rhizobium etli IE4771] Length = 238 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 106/238 (44%), Positives = 153/238 (64%), Gaps = 3/238 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK +F+ + E FF + AHNA FD+GFINAE RI P+ P R++DT Sbjct: 61 DEFLKDKKAFAEVAEEILAFFGDAKWI--AHNATFDMGFINAEFARIGLPPILPERVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGF 185 LS+ARRK+P N L++LC+RYG+ SHR+KHGALLDS LL++VYI+M+ + + G Sbjct: 119 LSMARRKNPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMIGGRQAALGLGQ 178 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 + + +L+R +PL R+++ E H+ + LG+ IW ++ SS Sbjct: 179 SGQAAGGEMAMEDDGAILEVLERPRPLAPRLSQAEAQAHEALVAKLGEKGIWSKFASS 236 >gi|149204383|ref|ZP_01881350.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035] gi|149142268|gb|EDM30315.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035] Length = 231 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 93/235 (39%), Positives = 136/235 (57%), Gaps = 6/235 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL ++ T RTF ++ P R A +HG+ Sbjct: 1 MREIVLDTETTGFEPESGDRIVEIGAVELYNHMPTGRTFHKYINPQ-RAMPEAAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I EF DF + + HNA FD+ F+NAEL + L + +D Sbjct: 60 GDDFLRDKPLFAEIAQEFLDFVQDAR--LVIHNAAFDMKFLNAELGWLKLPQLPWDQAVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR+K P S L++LC+R+ I S R+ HGALLDS +L++VY++++ G Q +F Sbjct: 118 TLAIARKKFPGSPASLDALCRRFQIDNSARTLHGALLDSEILAEVYLELIG-GRQPDFVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 T T + R PL +R+T E D H + +G A+W ++ Sbjct: 177 ATGPTAKSGGSTDTA-HWRPQPRPTPLASRLTATENDAHQAFVAKMGDAALWRKF 230 >gi|227823864|ref|YP_002827837.1| DNA polymerase III subunit epsilon [Sinorhizobium fredii NGR234] gi|227342866|gb|ACP27084.1| DNA polymerase III, epsilon subunit [Sinorhizobium fredii NGR234] Length = 232 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 114/234 (48%), Positives = 155/234 (66%), Gaps = 4/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLDS+ DR+IEIG VEL + T RT +++ P RK P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDSREDRVIEIGGVELENQFPTGRTIHIYINPGDRKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+FLKDKPSF+ + E DFF + AHNA FD+GFINAE R+ P+ R+ DT Sbjct: 61 DDFLKDKPSFADVVEEIVDFFGDARWV--AHNATFDIGFINAEFDRLGLPPVVIDRVTDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+M+ G Q G Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNSHRAKHGALLDSELLAEVYIEMIG-GRQAALGLV 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 T+E + P I +++R++ L R+T+ E+ H + +G AIW +Y Sbjct: 178 TSEIGGLAVQADDGPII-VMQRERLLAPRLTEAEIAAHAALVSKIGAKAIWMKY 230 >gi|323135821|ref|ZP_08070904.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242] gi|322398912|gb|EFY01431.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242] Length = 239 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 107/237 (45%), Positives = 142/237 (59%), Gaps = 10/237 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD K DR++EIGAVE+L+ T R F ++ P R EA ++HG+ Sbjct: 1 MREIVFDTETTGLDPSKGDRVVEIGAVEILNLIPTGRVFHAYIDPE-RDMPEEAFRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL F I EF DF + AHNA+FDV FINAE +N PL P+RI+D Sbjct: 60 SREFLSQHRKFREIAEEFIDFIEDSPMV--AHNAEFDVRFINAEFSMLNFAPLAPARIVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IARR HP S L++LC+RYGI +S R KHGALLD+ LL++VY ++M G Q Sbjct: 118 TLAIARRLHPGSPASLDALCQRYGIDLSRRDKHGALLDAGLLAEVYAELMG-GRQAALSL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 +T + + R PL R+T E + H + L K+AIWDRY++ Sbjct: 177 QTVSVSRRAQTSDLLR-----ARPAPLEDRLTPAEDEAHRAFVAGLSKSAIWDRYLT 228 >gi|49474836|ref|YP_032877.1| DNA polymerase III epsilon chain [Bartonella henselae str. Houston-1] gi|49237641|emb|CAF26821.1| DNA polymerase III epsilon chain [Bartonella henselae str. Houston-1] Length = 235 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 101/234 (43%), Positives = 144/234 (61%), Gaps = 3/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD + DRIIEIG VE++D T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGRRFHVYLNPQGVIIPDEVVAVHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LK++ SFS I EF +F N AHNA FD+GF+NAEL R NK + I+DT Sbjct: 61 NERLKNEKSFSDIADEFLEFINGATMI--AHNASFDIGFLNAELARANKPLISVDNILDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRK P + N L+ LCKR+GI SHR HGALLD+ +L+D+YI+++ G Q F Sbjct: 119 LAMARRKFPMAPNSLDVLCKRFGIDNSHRVFHGALLDAEILADIYIELIG-GKQGVLVFG 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 N + E ++ R + L R++ +E H ++ +G+ A+W+ + Sbjct: 178 NNGSVHEESENDKNAFSAVKIRPQNLSPRLSVQEKTMHADFVKKMGEKALWNSF 231 >gi|222147020|ref|YP_002547977.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4] gi|221734010|gb|ACM34973.1| DNA polymerase III epsilon chain [Agrobacterium vitis S4] Length = 236 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 112/235 (47%), Positives = 154/235 (65%), Gaps = 4/235 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+SK DR+IEIG +EL ++ T R+F V++ P R P+AL +HGIT Sbjct: 1 MREIVFDTETTGLESKLDRVIEIGGIELFNHFPTGRSFHVYINPADRAIHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 EFLKDKP F+ I + FF+ AHNA FD+GFINAE +R+ + + P +IDT Sbjct: 61 PEFLKDKPVFADIVEDLVAFFDGAKWV--AHNATFDMGFINAEFERLGRPLVGPEHVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+M+ G Q FG + Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMLG-GRQATFGLE 177 Query: 187 TN-EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + + + + + R K L +R+T+ E + H ++ LG+ AIW Y Sbjct: 178 QSGNSDKRSRTQDSNVTVEIAARPKTLASRLTEAEQERHAALVKRLGQKAIWAHY 232 >gi|86355674|ref|YP_467566.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42] gi|86279776|gb|ABC88839.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CFN 42] Length = 240 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 113/243 (46%), Positives = 157/243 (64%), Gaps = 8/243 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK F+++ E FF + AHNA FD+GFINAE RI P+ P ++IDT Sbjct: 61 DEFLKDKKPFAAVADEILAFFGDGKWI--AHNATFDMGFINAEFARIGLPPILPDKVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+M+ G Q FG Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIG-GRQAAFGLS 177 Query: 187 TNEDRFFKEE-----KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 + + + + L+R +PL +R+++ E H+ + LG+ IW +Y Sbjct: 178 ISGQPGQAARGEMAMEDDMAFAAALERPRPLGSRLSRSEAQAHEALVAKLGEKGIWAKYA 237 Query: 242 SSN 244 SSN Sbjct: 238 SSN 240 >gi|296444995|ref|ZP_06886956.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium OB3b] gi|296257416|gb|EFH04482.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium OB3b] Length = 242 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 100/237 (42%), Positives = 144/237 (60%), Gaps = 9/237 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD K RI+EIGAVE+ + T RTF +L P R EA ++HG+ Sbjct: 1 MREIVFDTETTGLDPAKGHRIVEIGAVEISNLIPTGRTFHFYLDPE-RDMPEEAFRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + FL + F I F +F + +AHNA+FD+ F+NAEL + + + R++D Sbjct: 60 STAFLTGQKKFREIAEAFLEFVADAQ--LVAHNAEFDMRFVNAELAMLGLEAIAADRVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IARR HP + N L++LC+RYG+ S R KHGALLDS+LL++VY ++M G Q Sbjct: 118 TLTIARRLHPGAANSLDALCQRYGVDSSRRDKHGALLDSYLLAEVYAELMG-GRQSALVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 +T+ ++ + L R PL R+ +EE+ H++ TLGK IW RY++ Sbjct: 177 QTSVAAAAQDLGADL----LRSRPAPLAPRLAEEEIAAHERFAATLGKAPIWSRYLT 229 >gi|254477303|ref|ZP_05090689.1| DNA polymerase III, epsilon subunit [Ruegeria sp. R11] gi|214031546|gb|EEB72381.1| DNA polymerase III, epsilon subunit [Ruegeria sp. R11] Length = 244 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 139/246 (56%), Gaps = 20/246 (8%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVELL++ T TF V++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPE-RSMPAEAFGVHGI 59 Query: 66 TDE-------------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L+DKP F+ + F DF + HNA FD+ F+N EL+R Sbjct: 60 GPDLLEPPQQPAPGAVTLRDKPVFAKVGKAFVDFVRDSKMI--IHNASFDMKFLNYELER 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + L + +DTL+IAR++ P S L++LC+R+ I S+R+ HGALLDS +L+DVY+ Sbjct: 118 MGLAALPMDQAVDTLAIARKRFPGSPATLDALCRRFNIDNSNRTLHGALLDSEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ G Q +FG T + K V + R PL RIT++E + H + +G Sbjct: 178 ELIG-GRQPDFGLSTAKSE--KSSTVQVDDWRPTARPSPLPPRITEQEKEAHAAFVAKMG 234 Query: 233 KNAIWD 238 + A+W+ Sbjct: 235 EGALWN 240 >gi|126724532|ref|ZP_01740375.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Rhodobacterales bacterium HTCC2150] gi|126705696|gb|EBA04786.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Rhodobacterales bacterium HTCC2150] Length = 230 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 133/234 (56%), Gaps = 6/234 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTG D DRI+EIGAVEL ++ T +T+ ++ P R EA ++HG+ Sbjct: 1 MRELVLDTETTGFDPFSGDRIVEIGAVELFNHMPTGKTYHQYINPQ-RAMPAEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL +P F+ I F DF + HNA FD+ F+NAEL + + L + +D Sbjct: 60 GDEFLARQPVFADIAQAFVDFVGT--DLLVIHNASFDMKFLNAELDWLGRAKLPMEQSLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR+K P S L++LC+R+G+ R KHGALLDS +L++VY++++ G Q +FG Sbjct: 118 TLAIARKKFPGSPASLDALCRRFGVNNDAREKHGALLDSEILAEVYLELIG-GRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 T + R PL RI++EE H + ++ L +W + Sbjct: 177 NTAAAASSGTDAG-FSEWRAQPRPNPLAPRISEEEAKAHREFVEKLADGGLWPK 229 >gi|85707524|ref|ZP_01038599.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Roseovarius sp. 217] gi|85667957|gb|EAQ22843.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Roseovarius sp. 217] Length = 231 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 91/234 (38%), Positives = 137/234 (58%), Gaps = 6/234 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL ++ T RTF ++ P R A +HG+ Sbjct: 1 MREIVLDTETTGFEPESGDRIVEIGAVELYNHMPTGRTFHKYINPQ-RAMPEAAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL++KP F+ I EF DF + A+ + HNA FD+ F+NAEL + L + ID Sbjct: 60 GDDFLRNKPLFAEIAQEFLDFVLD--AKLVIHNAAFDMKFLNAELGWLKLPHLPWEQAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR+K P S L++LC+R+ I S R+ HGALLDS +L++VY++++ G Q +F Sbjct: 118 TLAIARQKFPGSPASLDALCRRFQIDNSARTLHGALLDSEILAEVYLELIG-GRQPDFAL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + + R PL R+T+ E H + +G+ A+W + Sbjct: 177 SSTSSTRSSDMTEPDV-WRPHPRPTPLAPRLTESEAAAHQAFVARMGEAALWRK 229 >gi|56698700|ref|YP_169077.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3] gi|56680437|gb|AAV97103.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3] Length = 241 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 136/247 (55%), Gaps = 21/247 (8%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL ++ T T+ ++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPETGDRIVEIGAVELWNHIATGNTYHQYINPE-RMMPAEAFGVHGI 59 Query: 66 TDEFLKDK-------------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L+ P F+ + F DF + + + HNA FD+ F+NAEL+ Sbjct: 60 GPDILEPPQQPEPGQVTLRDKPVFAKVGQAFRDFVADSH--LVIHNASFDMKFLNAELRW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + R IDTL +ARRK P S L++LC+R+GI S+R HGALLD+ +L++VY+ Sbjct: 118 MGLPEIPFDRAIDTLGMARRKFPGSPATLDALCRRFGIDNSNRVLHGALLDAEILAEVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ G Q +FG T + + R PL RIT+ E H + ++ LG Sbjct: 178 ELIG-GKQPDFGLST---VTTGDGPGQETAWRAMPRPTPLPARITEAERTAHAEFVEKLG 233 Query: 233 KNAIWDR 239 +NA+W R Sbjct: 234 ENAVWKR 240 >gi|163738000|ref|ZP_02145416.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis BS107] gi|163742604|ref|ZP_02149990.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis 2.10] gi|161384189|gb|EDQ08572.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis 2.10] gi|161388616|gb|EDQ12969.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis BS107] Length = 245 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 140/246 (56%), Gaps = 19/246 (7%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVELL++ T TF V++ P R +A K+HGI Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPQ-RSMPQDAFKVHGI 59 Query: 66 TDE-------------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L+DKP F+ + +F DF + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQQPGPGAVTLRDKPVFAKVGQKFLDFVRDSKMV--IHNAAFDMKFLNAELDW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + L + +DTL+IAR++ P S L++LC+R+ I S+R+ HGALLDS +L+DVY+ Sbjct: 118 MGLPKLPMDQAVDTLAIARKRFPGSPATLDALCRRFNIDNSNRTLHGALLDSEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ G Q +FG + D+ T + R PL +R+T++E + H + +G Sbjct: 178 ELIG-GRQPDFGLSASNDKSSSGSVVT-DDWRPTARPSPLPSRLTEQEQEAHANFVAKMG 235 Query: 233 KNAIWD 238 A+W+ Sbjct: 236 DAALWN 241 >gi|254472171|ref|ZP_05085571.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062] gi|211958454|gb|EEA93654.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062] Length = 236 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 146/239 (61%), Gaps = 8/239 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I FD ETTGL+ DR++EIG VEL+++ T RT +++ P R EA ++HG+ Sbjct: 1 MREISFDTETTGLNPLDGDRLVEIGGVELINFIPTGRTCHLYVNPQ-RDMPEEAFRIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + EF DF + + HNA FD+GFIN EL R NK + ++++D Sbjct: 60 SAEFLSDKPVFADVADEFLDFVGDAR--LVIHNAPFDMGFINMELARCNKPKISNTQVLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRK P+ L++LC RYGI S R HGALLD+ LL++VY++M GG Q N G Sbjct: 118 TLKLARRKFPTGSVSLDALCSRYGIDNSKRVYHGALLDAELLAEVYLEM-NGGKQKNLGL 176 Query: 186 KTNEDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 +++ + + I+ +R PL +++EE++ H K I + + W++Y+ Sbjct: 177 MPDDEAIDLDNIGDDQPKQRIAAKQRPVPLSPALSEEEIEAHAKFIAGMKTDPAWNKYL 235 >gi|110677834|ref|YP_680841.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh 114] gi|109453950|gb|ABG30155.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh 114] Length = 228 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 97/234 (41%), Positives = 144/234 (61%), Gaps = 8/234 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL+ + T RT+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGRTYHQYINPE-RSMPEEAFQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ + F DF + A+ + HNA FD+ F+NAEL IN + + ID Sbjct: 60 GDDFLRDKPKFAEVGQAFLDFIGD--AKLVIHNAAFDIKFLNAELGWINLPKIPWEQAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IAR++ P S L++LC+R+GI + R+ HGALLDS +L++VY++++ G Q +FG Sbjct: 118 TLDIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILAEVYLELIG-GRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + K T + + R PL +RIT+EE H + LG +A+W + Sbjct: 177 S---NIPQKSAGDTSVDWTPRPRPTPLPSRITEEEAAAHADFVAKLGDDAVWLK 227 >gi|85375423|ref|YP_459485.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis HTCC2594] gi|84788506|gb|ABC64688.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis HTCC2594] Length = 229 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 91/233 (39%), Positives = 132/233 (56%), Gaps = 6/233 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD K DR++EIG VEL++ T TF + P R P A ++HG+ Sbjct: 1 MREIVFDTETTGLDPKTGDRMVEIGCVELMNRVPTGETFHAYYNPE-RDMPPAAEEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + FL DKP F +F + A +AHNA FD GF+N EL+ I ++ + R++D Sbjct: 60 SAAFLSDKPLFRDTADALLEFLGD--APLVAHNAGFDFGFLNTELELIEREAISLDRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ IAR+KHP ++ L++LC RYG+ SHR KHGALLD+ LL+ VY++++ G QI G Sbjct: 118 TVQIARKKHPGAKVSLDALCSRYGVDRSHRVKHGALLDAELLAQVYVELLG-GRQIGLGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 E P P + EEL H ++ + ++ +W+ Sbjct: 177 DPEAADTDPSEAAWKPETVARAFRTPRPHAASAEELARHKVFLEGI-ESPLWN 228 >gi|326796075|ref|YP_004313895.1| DNA polymerase III subunit epsilon [Marinomonas mediterranea MMB-1] gi|326546839|gb|ADZ92059.1| DNA polymerase III, epsilon subunit [Marinomonas mediterranea MMB-1] Length = 235 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 81/236 (34%), Positives = 120/236 (50%), Gaps = 6/236 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTG+D K RIIEIG VE++ T R F V++ P+ R+ EA ++HGI Sbjct: 1 MRQVVLDTETTGIDPKQGHRIIEIGCVEMIGRKLTKRHFHVYINPD-REVEEEAFQVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++EFL DKP F I EF DF + D I D Sbjct: 60 SNEFLADKPRFHEIAQEFLDFIRGAELIIHNAPFDVGFMDHEFSMLGNFPKTRDVCEIFD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L AR+KHP ++N+L++LC+RYGI SHR HGALLDS +L+DVY+ M G + + Sbjct: 120 SLVFARKKHPGAKNNLDALCRRYGIDNSHRELHGALLDSEILADVYLLMTGGQTSLGLSM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 + + + +S R R + E+ H++ + + K ++W Sbjct: 180 NDGSEGGDSDNVGEIRRLSP-DRPMLKVLRANETEMAAHEERLDLIDKKSGQSLWR 234 >gi|192288734|ref|YP_001989339.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris TIE-1] gi|192282483|gb|ACE98863.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris TIE-1] Length = 232 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 99/238 (41%), Positives = 140/238 (58%), Gaps = 9/238 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T RT+ +L P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHQYLNPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + EF +F + A + HNA FD+GFINAEL R+++ P+ R++D Sbjct: 60 SSEFLADKPLFAHVADEFLEFIGD--APLVIHNASFDIGFINAELSRLSRAPVPRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIG-ARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 + +R PL R+T+ +L+ H I T+G+ AIW Y+ + Sbjct: 177 ADVPAEVVGAASENRRR----QRPAPLPNRLTEADLEAHRAFIATMGEKAIWPDYLPA 230 >gi|99082698|ref|YP_614852.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040] gi|99038978|gb|ABF65590.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040] Length = 243 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 128/242 (52%), Gaps = 15/242 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVELL++ T TF V++ P Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPQRSMPHEAFGVHGIG 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNE----------QNAEWIAHNAKFDVGFINAELQRINK 115 D +P ++++ + HNA FD+ F+NAEL +N Sbjct: 61 PDLLEPPQPPAPGQVILKDKPLFAEVGQAFLDFVRDSKMVIHNASFDMKFLNAELGWMNL 120 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L + IDTL++AR++ P S L++LC+R+GI S+R+ HGALLDS +L+DVY++++ Sbjct: 121 PQLPMDQAIDTLAMARKRFPGSPATLDALCRRFGIDNSNRTLHGALLDSEILADVYLELI 180 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 G Q +FG + + N R+ PL +R+T EE HD+ + LG++A Sbjct: 181 G-GRQPDFGLSA---QSSGGQNAVDTNWRPAPRETPLPSRLTAEEKAAHDEFVGKLGEDA 236 Query: 236 IW 237 +W Sbjct: 237 LW 238 >gi|86136750|ref|ZP_01055328.1| DNA polymerase III, epsilon subunit [Roseobacter sp. MED193] gi|85826074|gb|EAQ46271.1| DNA polymerase III, epsilon subunit [Roseobacter sp. MED193] Length = 243 Score = 157 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 138/247 (55%), Gaps = 21/247 (8%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH-- 63 MR+IV D ETTG D DRI+EIGAVELL++ T TF V++ P R EA +H Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPE-RSMPQEAFGVHGI 59 Query: 64 -----------GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 L+DKP F+ F DF + HNA FD+ F+N EL R Sbjct: 60 GPDLLEPPQKPEKGQVTLRDKPVFAKFGQAFLDFVRDSRMV--IHNASFDMKFLNFELDR 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + L + +DTL++AR++ P S L++LC+R+ I S+R+ HGALLDS +L+DVY+ Sbjct: 118 MGLRTLPMEQALDTLAMARKRFPGSPATLDALCRRFQIDNSNRTLHGALLDSEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 + + GG Q +FG TN + V + R PL +R+T +E + H+ ++ +G Sbjct: 178 E-LSGGRQPDFGLSTNATAGGGQ---VVEDWRPAPRHTPLPSRLTAKEAEAHEAFVEKMG 233 Query: 233 KNAIWDR 239 ++A+W++ Sbjct: 234 EDALWNQ 240 >gi|304311305|ref|YP_003810903.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1] gi|301797038|emb|CBL45251.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1] Length = 246 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 123/243 (50%), Gaps = 8/243 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL+ + RIIEIG VEL+D T R + ++ P R A+ +HGIT Sbjct: 5 RQIVLDTETTGLEPAEGHRIIEIGCVELVDRRHTGRHYHQYINPE-RLVDAGAMAVHGIT 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +EFL DKP F+ I F++F N L + + ++DT Sbjct: 64 NEFLADKPKFAEIADAFFEFINGAELVIHNAAFDVGFINHEFNLLKRFGTVGEHCSVLDT 123 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +AR+KHP +N+L++LC+RY I S R HGALLD+ +L+DVY+ M Q F Sbjct: 124 LLMARKKHPGQKNNLDALCRRYEIDNSQRELHGALLDAQILADVYLAMTG--GQTALSFS 181 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRYIS 242 + ++ R R ++ E++ H++ +Q L K N ++ +Y Sbjct: 182 SGDEGQSGAASVATVQRFSDNRAPLKVIRASQAEIEAHEQYVQLLDKRSSGNTVYRKYSP 241 Query: 243 SNQ 245 S++ Sbjct: 242 SSE 244 >gi|114706065|ref|ZP_01438968.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506] gi|114538911|gb|EAU42032.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506] Length = 242 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 110/236 (46%), Positives = 157/236 (66%), Gaps = 4/236 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGLD+ DR+IEIG VEL ++ T +T+ ++ P GRK P A +HGI+ Sbjct: 1 MREIVFDTETTGLDNTIDRVIEIGGVELWNHIPTGKTYHQYIRPAGRKVDPAAFDVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFL DKP F I EF FF++ A+ IAHNA FD+GF+NAELQR+ P++PS +IDT Sbjct: 61 DEFLLDKPLFEEIADEFVAFFSD--AKLIAHNANFDIGFLNAELQRLRHPPIEPSLVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRK P + L++LC R+ + S R KHGALLDS LL+DVYI+++ G Q + G Sbjct: 119 LAMARRKFPMAPASLDALCSRFAVDTSKREKHGALLDSELLADVYIELIG-GRQSSLGLI 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 D + + P +++ R+ PL R++++E H +++LG A+W RY+ Sbjct: 178 VEADETYASGEAGGP-VAVSAREAPLAPRLSEDEASRHLAFVESLGDEALWWRYLP 232 >gi|254462819|ref|ZP_05076235.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium HTCC2083] gi|206679408|gb|EDZ43895.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium HTCC2083] Length = 224 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 90/228 (39%), Positives = 135/228 (59%), Gaps = 8/228 (3%) Query: 13 DIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTG D + DRI+EIGAVEL++ T RT+ ++ P R +A ++HG+ D+FL+ Sbjct: 2 DTETTGFDPQQGDRIVEIGAVELINQMPTGRTYHQYINPE-RAMPDDAFQVHGLGDDFLR 60 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 DKP F I EF DF + HNA FD+ F+NAEL +N L + +DTL+IAR Sbjct: 61 DKPVFKQIAQEFLDFVKDDTMV--IHNASFDMKFLNAELGWLNMKQLPMEQALDTLAIAR 118 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191 ++ P S L++LC+R+ I S+R+ HGALLDS +L++VY++++ G Q Sbjct: 119 KRFPGSPASLDALCRRFNIDNSNRTLHGALLDSEILAEVYLELLG-GRQPGLVLANTGGS 177 Query: 192 FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 ++T KR PL +RIT+EE H ++ LG++A+W + Sbjct: 178 ASGGSEET---WRASKRPTPLPSRITEEEAKAHTAFVEKLGEDALWSK 222 >gi|126738511|ref|ZP_01754216.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6] gi|126720310|gb|EBA17016.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6] Length = 242 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 138/246 (56%), Gaps = 18/246 (7%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-------- 57 MR+IV D ETTG D DRI+EIGAVEL ++ T +T+ ++ P Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELFNHMPTGKTYHEYINPERSMPHEAFGVHGIG 60 Query: 58 ----EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 E + L+DKP F+ + F DF + ++ + HNA FD+ F+NAEL + Sbjct: 61 PDLLEPPQQPEKGQVTLRDKPVFAKVGQSFLDFVQD--SKLVIHNASFDMKFLNAELDWM 118 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L ++ IDTL++AR++ P + L++LC+R+ I S+R+ HGALLDS +L++VY++ Sbjct: 119 GLPKLPLNQAIDTLAVARKRFPGAPATLDALCRRFQIDNSNRTLHGALLDSEILAEVYLE 178 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 ++ G Q +FG T +E + + +R PL +R+T+EEL HD ++ +G Sbjct: 179 LIG-GRQPDFGLST--STSGSKEGQVAEDWRPTQRATPLPSRLTQEELSAHDAFVEKMGD 235 Query: 234 NAIWDR 239 A+W + Sbjct: 236 AALWRQ 241 >gi|192359256|ref|YP_001982513.1| DNA polymerase III subunit epsilon [Cellvibrio japonicus Ueda107] gi|190685421|gb|ACE83099.1| DNA polymerase III, epsilon subunit [Cellvibrio japonicus Ueda107] Length = 237 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 85/241 (35%), Positives = 127/241 (52%), Gaps = 13/241 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + RIIEIG VEL++ T R + ++ P R+ A +HGI Sbjct: 1 MRQIVLDTETTGLEYSQGHRIIEIGCVELMNRRLTGRHYHQYINPE-REVDAGAFAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---ELQRINKDPLDPSR 122 ++ L DKP F+ I +F +F + I HNA FD+GFI+ L+ Sbjct: 60 SNAMLNDKPVFARIVDDFLNFVGDAE--LIIHNAAFDIGFIDHELNMLRPGFGSIKGRCG 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDTL +AR KHP +N+L++LCKRYG+ S R HGALLD+ +L+DVY+ M Q + Sbjct: 118 VIDTLLLARNKHPGQKNNLDALCKRYGVDNSQRDLHGALLDAEILADVYLAMTG--GQTS 175 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 N+ + + +R + EEL H++ + + G N +W Sbjct: 176 LSLGGNQAKAEGGGNQEGIRRLSSQRPALRVISASAEELQAHEEKLAAIARSSGDNCLWL 235 Query: 239 R 239 + Sbjct: 236 K 236 >gi|158421629|ref|YP_001522921.1| DNA polymerase III [Azorhizobium caulinodans ORS 571] gi|158328518|dbj|BAF86003.1| DNA polymerase III [Azorhizobium caulinodans ORS 571] Length = 240 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 94/236 (39%), Positives = 145/236 (61%), Gaps = 6/236 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ K DR++EIG VE+++ T TF V++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLEANKGDRVVEIGCVEMVNRILTGNTFHVYINPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + F +F + HNA FD+GF+NAEL R++++P+ R++D Sbjct: 60 SSEFLSDKPKFAEVADAFLEFIAG--DTLVIHNAAFDIGFLNAELARLSREPIARDRVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+++ARRKHP + L+ L KRYGI S R KHGALLDS LL++VY +++ G + G Sbjct: 118 TVALARRKHPGASAKLDDLMKRYGIDASRRVKHGALLDSELLAEVYSELLGGRQAMLVGL 177 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 ++ ++ R PL +R++ EE+ H + I +G+ IW++Y+ Sbjct: 178 A--DETSEAPRLVVEVAVAARARPVPLPSRLSAEEIAAHREFIGGMGEKGIWNQYL 231 >gi|316931718|ref|YP_004106700.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris DX-1] gi|315599432|gb|ADU41967.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris DX-1] Length = 232 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 98/238 (41%), Positives = 139/238 (58%), Gaps = 9/238 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T RT+ +L P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHRYLNPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + EF +F + + HNA FD+GFINAEL R+++ P+ R++D Sbjct: 60 SAEFLADKPLFAQVADEFLEFIGD--DPLVIHNASFDIGFINAELSRLSRAPVPRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIG-ARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 + +R PL R+T +L+ H I T+G+ AIW Y+++ Sbjct: 177 ADVPAEVVGAASENRRR----QRPAPLPNRLTDADLEAHRAFIATMGEKAIWPDYLAA 230 >gi|159045988|ref|YP_001534782.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12] gi|157913748|gb|ABV95181.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12] Length = 230 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 88/233 (37%), Positives = 140/233 (60%), Gaps = 7/233 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DR++EIG VEL ++ T R + ++ P R A ++HG+ Sbjct: 1 MREIVLDTETTGFEPSEGDRLVEIGGVELFNHVPTGRVYHQYINPQ-RSMPQSAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL DKP F+ + F DF + A+ + HNA FD+ F+NAEL + K L + ID Sbjct: 60 GDDFLADKPLFAEVAEAFLDFIGD--AKLVIHNAAFDMKFLNAELGWLGKPLLPMEQAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IARRK P S L++LC+R+G+ S R KHGALLDS +L++VY++++ G Q Sbjct: 118 TLAIARRKFPGSPASLDALCRRFGVDNSAREKHGALLDSEILAEVYLELIG-GQQPGLEL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + + + ++ R PL +R++++E H +++LG++A+W Sbjct: 177 SSVQTPST--QNVDNGHLRARPRPAPLPSRVSEKEKAAHAAFVESLGQSALWR 227 >gi|163757474|ref|ZP_02164563.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43] gi|162284976|gb|EDQ35258.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43] Length = 233 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 114/233 (48%), Positives = 155/233 (66%), Gaps = 4/233 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGLD+K DRIIEIG VEL + T R+ +F+ P+GR P+AL +HGIT Sbjct: 1 MREIVFDTETTGLDNKVDRIIEIGCVELENQFPTGRSLHLFINPDGRAVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+FL DKP F+ + E FF+ + AHNA FD+GF+NAE RI P+DP +IDT Sbjct: 61 DQFLADKPVFADLADEIAAFFDGAHYV--AHNANFDMGFLNAEFDRIGLPPVDPGLVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARR+HP N L++LC+RYGI +HR+KHGALLD+ LL+DVYI+M GG Q G Sbjct: 119 LALARRRHPMGPNSLDALCRRYGIDNAHRTKHGALLDAELLTDVYIEM-RGGRQAALGLS 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + E EE ++V I + +R L R+T EL+ H + +G +A+W + Sbjct: 178 SAEAGNKTEESESVV-IEIGERPGKLPERLTAGELEAHSTLVNRIGADALWLK 229 >gi|328541691|ref|YP_004301800.1| DNA polymerase III, epsilon subunit [polymorphum gilvum SL003B-26A1] gi|326411443|gb|ADZ68506.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum SL003B-26A1] Length = 240 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 99/241 (41%), Positives = 140/241 (58%), Gaps = 11/241 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I FD ETTGLD + DR++EIG VEL ++ T T+ V++ P R A +HG+ Sbjct: 1 MREIAFDTETTGLDPRNGDRLVEIGGVELFNHVPTGNTYHVYINPE-RDMPEAAFNVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ I EF F + + HNA FD+GFIN EL R + P+ ++++D Sbjct: 60 SAEFLADKPVFAEIVDEFLAFVGDAR--LVIHNAAFDMGFINMELSRAGRLPIPRTQVLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L++LC RYGI S R++HGALLDS LL++VY++++ G Q G Sbjct: 118 TLELARRKHPMGPNSLDALCGRYGIDNSRRTRHGALLDSELLAEVYLELIG-GRQTALGL 176 Query: 186 KTNED------RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 E+ E S R PL + +T+EE H + +G+ AIW + Sbjct: 177 VLQEEVSGRSYGGQSEGSGPAQVRSAPPRPVPLASWLTEEEKAAHATFVAGMGETAIWSK 236 Query: 240 Y 240 Y Sbjct: 237 Y 237 >gi|254511557|ref|ZP_05123624.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium KLH11] gi|221535268|gb|EEE38256.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium KLH11] Length = 240 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 126/244 (51%), Gaps = 16/244 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL ++ T T+ V++ P Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELWNHVATGETYHVYINPERGMPDEAFGVHGIG 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWI----------AHNAKFDVGFINAELQRINK 115 D +P + + + HNA FD+ F+NAEL + Sbjct: 61 PDLLENPRPPEKGEVTLKDKPVFAKVGQGFRDFVGDAQLVIHNASFDMKFLNAELGWMGV 120 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + ++ IDTL+IAR++ P S L++LC+R+GI S+R HGALLDS +L++VY++++ Sbjct: 121 PLIPMAQAIDTLAIARKRFPGSPASLDALCRRFGIDNSNRVLHGALLDSEILAEVYLELI 180 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 G Q +FG T+ + R PL +RIT++E H K ++ LG++A Sbjct: 181 G-GRQPDFGLSTSASNAAGGGDE----WRPTARPTPLSSRITEDERAAHQKFVEGLGESA 235 Query: 236 IWDR 239 +W R Sbjct: 236 LWTR 239 >gi|146337369|ref|YP_001202417.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. ORS278] gi|146190175|emb|CAL74167.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Bradyrhizobium sp. ORS278] Length = 232 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 94/237 (39%), Positives = 136/237 (57%), Gaps = 8/237 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD+ + DR++EIG VE+++ T + F ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHRYINPQ-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F + +F F + A + HNA FD+GFINAEL R+ + + R++D Sbjct: 60 STEFLSDKPLFHEVVEDFLAFIGD--APLVIHNASFDIGFINAELDRVKRAAIPRERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VY+ ++ Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVG-ARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + P +RD PL R+T+ E + H + TLG IW +++ Sbjct: 177 TQDAQEIRIGNAGDTPR---RQRDVPLAPRVTEAEREAHRAFVATLGDKPIWMDFLT 230 >gi|292493431|ref|YP_003528870.1| DNA polymerase III subunit epsilon [Nitrosococcus halophilus Nc4] gi|291582026|gb|ADE16483.1| DNA polymerase III, epsilon subunit [Nitrosococcus halophilus Nc4] Length = 242 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 135/246 (54%), Gaps = 12/246 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K RIIEIG VEL++ +T +TF +L P R+ ALK+HG+ Sbjct: 1 MRQIILDTETTGLEPKEGHRIIEIGGVELINRRRTGQTFHCYLNPE-RRVDEGALKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 ++EFL DKP F + EF F E + HNA FDVGF++ EL + Sbjct: 60 SNEFLSDKPRFVEVAEEFLAFIREAE--LVIHNAPFDVGFLDHELSLLGSQWGKVSLYCQ 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR++HP +N L++LCKRYG+ S R HGALLD+ +L+ VY+ M G + ++ Sbjct: 118 VLDTLVLARQRHPGQKNSLDALCKRYGVDNSRRDLHGALLDAEILAGVYLAMTGGQASLS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 ED + + ++ KR R ++EE H + + K +W Sbjct: 178 LRGYGGEDSQSQPGEGKYRPVA-AKRPPLKVVRASEEERSAHQARLAAIDKVSGGACLWH 236 Query: 239 RYISSN 244 + S + Sbjct: 237 QIESPD 242 >gi|319407879|emb|CBI81531.1| DNA polymerase III epsilon chain [Bartonella schoenbuchensis R1] Length = 235 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 99/234 (42%), Positives = 142/234 (60%), Gaps = 3/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD +DRIIEIG VE++D T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLDKDSDRIIEIGCVEMVDRYLTKRQFHVYLNPQGVIIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LK++ F I EF +F + AHNA FD+ F+NAEL RINK + +IDT Sbjct: 61 NERLKNEKKFEDIADEFLEFIDGATMV--AHNASFDISFLNAELGRINKPLISVDNVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L+IAR+K P N L+ LCKR+GI S+R HGALLD+ +L+DVYI+++ G Q F Sbjct: 119 LAIARQKFPMGPNSLDVLCKRFGIDNSNRVLHGALLDAEILADVYIELIG-GKQGVLSFD 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 N D + + ++ R L +R++ +E D H ++ +G A+W+ + Sbjct: 178 NNSDLDENIQNGKNVSHTVKTRPHALPSRLSTQEKDMHADLVKKIGDKALWNNF 231 >gi|90420992|ref|ZP_01228896.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans SI85-9A1] gi|90334770|gb|EAS48546.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans SI85-9A1] Length = 239 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 110/239 (46%), Positives = 152/239 (63%), Gaps = 6/239 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGLD +R+IEIG VEL ++ T + + F+ P GRK P A +HGI+ Sbjct: 1 MREIVFDTETTGLDPDVERVIEIGGVELWNHIPTGKNYHAFIRPAGRKVDPAAFDVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+FL DKP FS I EF +FF+ A+ IAHNA FDV F+NAEL+RI++ P+DPS +IDT Sbjct: 61 DDFLADKPLFSEIADEFLEFFSG--AKLIAHNAAFDVRFLNAELKRIDQPPIDPSVVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +ARRK P + L++LC R+ + S R KHGALLDS LL++VYI+++ G Q G Sbjct: 119 LPMARRKFPMAPATLDALCSRFSVDTSRRDKHGALLDSELLAEVYIELIG-GRQAALGLA 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245 ED + + R PL +R++++E+ H + TLG AIW Y+ + Sbjct: 178 VEEDAHEDADGNV---WRIAPRPVPLPSRLSQDEIVRHRAFVSTLGDEAIWWNYLERPE 233 >gi|327191192|gb|EGE58235.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CNPAF512] Length = 241 Score = 155 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 106/240 (44%), Positives = 154/240 (64%), Gaps = 6/240 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK +F+ + E FF + AHNA FD+GFINAE RI P+ P R++DT Sbjct: 61 DEFLKDKKAFAEVAEEILAFFGDAKWI--AHNATFDMGFINAEFARIGLPPILPERVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGF 185 LS+ARRKHP N L++LC+RYG+ SHR+KHGALLDS LL++VYI+M+ + + G Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMIGGRQAALGLGL 178 Query: 186 KTNEDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + + + + ++L+R +PL R+++ E H + LG+ IW ++ S Sbjct: 179 SGQSGQTARGDMAMEDDGVISAVLERPRPLAPRLSQAEAQAHAALVSKLGEKGIWSKFAS 238 >gi|163867311|ref|YP_001608505.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476] gi|161016952|emb|CAK00510.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476] Length = 235 Score = 155 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 104/234 (44%), Positives = 146/234 (62%), Gaps = 3/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD + DRIIEIG VE++D T F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGCQFHVYLNPEGVIIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LK++ SFS I EF +F N AHNA FD+GFINAEL+R+NK + IIDT Sbjct: 61 NERLKNEKSFSDIVDEFLEFINGATMI--AHNASFDIGFINAELKRVNKPLISVDNIIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRK P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+++ G Q GF Sbjct: 119 LAMARRKFPMGPNSLDILCKRFGIDNSHRVLHGALLDAEILADVYIELIG-GKQGVLGFD 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + + T + ++ R + L +R++ +E H I +G+ A+W+ + Sbjct: 178 NKRNLDEHIQNDTDMSYAVKFRPQALPSRLSAQEKKLHADFINKMGEKALWNTF 231 >gi|190889645|ref|YP_001976187.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652] gi|190694924|gb|ACE89009.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652] Length = 241 Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 107/240 (44%), Positives = 153/240 (63%), Gaps = 6/240 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK +F+ + E FF + AHNA FD+GFINAE RI P+ P R++DT Sbjct: 61 DEFLKDKKAFAEVAEEILAFFGDAKWI--AHNATFDMGFINAEFARIGLPPILPERVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGF 185 LS+ARRKHP N L++LC+RYG+ SHR+KHGALLDS LL++VYI+M+ + + G Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMIGGRQAALGLGL 178 Query: 186 KTNEDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + + E + ++L+R +PL R+++ E H + LG IW ++ S Sbjct: 179 SGQSGQTARGEMAMEDDGVISAVLERPRPLAPRLSQAEAQAHAALVSKLGDKGIWSKFAS 238 >gi|83594940|ref|YP_428692.1| DNA polymerase III, subunit epsilon [Rhodospirillum rubrum ATCC 11170] gi|83577854|gb|ABC24405.1| DNA polymerase III, epsilon subunit [Rhodospirillum rubrum ATCC 11170] Length = 230 Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 85/234 (36%), Positives = 137/234 (58%), Gaps = 12/234 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD DR++EIG +EL+++ + +++ P R PEA ++HG+ Sbjct: 1 MREIVLDTETTGLDPATGDRLVEIGCIELINHMPSGNDLHLYVNPE-RDMPPEAFRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ FL DKP F+ + EF F E I HNA FD+ F+NAEL R+ + PL SR +D Sbjct: 60 SEAFLADKPLFAEVVDEFLAFIGEDR--LIIHNAAFDMKFLNAELARLKRPPLPMSRALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +A+ + P ++ L++LC+R+G+ S R+KHGAL+D LL++VY++++ G + Sbjct: 118 TLRMAQARFPGAQASLDALCRRFGVDTSSRTKHGALIDCVLLAEVYLELIG-GREPGLAL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 ++ R + P P + EEL H++ ++ + K+ IW R Sbjct: 177 SADKRRDGAAVQVARP------FRAPRPHAASPEELAAHEEFLKKV-KDPIWRR 223 >gi|259417863|ref|ZP_05741782.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B] gi|259346769|gb|EEW58583.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B] Length = 243 Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 84/243 (34%), Positives = 128/243 (52%), Gaps = 15/243 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVELL++ T TF V++ P Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPERSMPHEAFGVHGIG 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNE----------QNAEWIAHNAKFDVGFINAELQRINK 115 D +P+ + ++++ + HNA FD+ F+NAEL +N Sbjct: 61 PDLLEPPQPAAPGQVTLKDKPLFAEVGQAFLDFVRDSKMVIHNASFDMKFLNAELGWMNL 120 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L + IDTL++AR++ P S L++LC+R+ I S+R+ HGALLDS +L+DVY++++ Sbjct: 121 RQLPMEQAIDTLAMARKRFPGSPATLDALCRRFSIDNSNRTLHGALLDSEILADVYLELI 180 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 G Q +FG T + + N R PL +R+T EE H++ + LG A Sbjct: 181 G-GRQPDFGLST---QSGSGQNAADTNWRPSPRATPLPSRLTSEEKTAHEEFVAKLGAEA 236 Query: 236 IWD 238 +W+ Sbjct: 237 LWN 239 >gi|332306364|ref|YP_004434215.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173693|gb|AEE22947.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 235 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 100/241 (41%), Positives = 143/241 (59%), Gaps = 14/241 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D + RIIEIG VEL++ T TF V++ P R EA+++HGI Sbjct: 1 MRQIVLDTETTGIDPRQGHRIIEIGCVELVNRRLTGNTFHVYINPQ-RLIEQEAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPS 121 T+E+L DKP F+ I ++F F N + HNA FDVGF++ E + K D Sbjct: 60 TNEYLLDKPVFADIAADFAQFINGAQ--LVIHNAPFDVGFMDHEFDRVASMVGKKTADMC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR+ HP +N+L++LCKRYGI SHR HGALLDS +L+DVY+ M G + + Sbjct: 118 TVLDTLEMARQIHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLMMTGGQTAL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238 N K+N D + E + SL ++ R T +EL EH+K + + K + +W Sbjct: 178 NLSGKSNSDGGSQVEPIRRLDPSL---NQLKVLRATADELAEHEKRLDLVTKEGGSCLWR 234 Query: 239 R 239 Sbjct: 235 E 235 >gi|152995731|ref|YP_001340566.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1] gi|150836655|gb|ABR70631.1| DNA polymerase III, epsilon subunit [Marinomonas sp. MWYL1] Length = 237 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 82/236 (34%), Positives = 121/236 (51%), Gaps = 6/236 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTG+D K RIIEIG VE++ TNR F V++ P+ R+ EA ++HGI Sbjct: 1 MRQVVLDTETTGIDPKQGHRIIEIGCVEMIGRKLTNRHFHVYINPD-REVEEEAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++EFL DKP F I EF+DF + + D Sbjct: 60 SNEFLADKPRFHEIAQEFFDFIKGAELIIHNAPFDIGFMDHEFARIGGYPKTAEVCGVFD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L AR+KHP +N+L+ LC+RYGI SHR HGALLDS +L+DVY+ M G + + Sbjct: 120 SLVYARKKHPGQKNNLDILCRRYGIDNSHRELHGALLDSEILADVYLLMTGGQTSLGLAS 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 + + + + + S R R + EEL H++ + + K ++W Sbjct: 180 SSESESKEEGGVEEIRRFS-ADRPALKVIRASSEELKLHEERLDLIDKKSGQSLWR 234 >gi|148251776|ref|YP_001236361.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. BTAi1] gi|146403949|gb|ABQ32455.1| DNA polymerase III, epsilon subunit [Bradyrhizobium sp. BTAi1] Length = 232 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 96/237 (40%), Positives = 136/237 (57%), Gaps = 8/237 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD+ + DR++EIG VE+++ T + F ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHRYINPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F I EF +F + A + HNA FD+GFINAEL R+ + + R++D Sbjct: 60 SSEFLADKPLFHEIVEEFLEFIGD--APLVIHNASFDIGFINAELDRVKRAAIPRERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VY+ ++ Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVG-ARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + P +R+ PL R+T E + H I TLG IW +++ Sbjct: 177 TQDTQEIRVGAAGDTPR---RQRETPLAARVTDAEREAHRAFIATLGDKPIWMEFLA 230 >gi|325291458|ref|YP_004277322.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3] gi|325059311|gb|ADY63002.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3] Length = 233 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 111/234 (47%), Positives = 150/234 (64%), Gaps = 3/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGL+SK DR+IEIG +EL ++ T RT +++ P RK P+AL +HGIT Sbjct: 1 MREIIFDTETTGLESKLDRVIEIGGIELNNHFPTGRTLHIYINPEDRKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+FLKDKP F+ + E +FF AHNA FD+GFINAE R+ P+ + DT Sbjct: 61 DDFLKDKPKFAEVVDEIREFFEGARWV--AHNATFDMGFINAEFARLGIAPVSSELVTDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+M+ G Q GF Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIG-GRQTALGFG 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + + + L+R PL +R+ E + H K + +G AIW+RY Sbjct: 178 SGSKQQAVTIEDDDVPHEPLQRPHPLPSRLDAETIAAHGKLVLGMGDKAIWNRY 231 >gi|254502882|ref|ZP_05115033.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11] gi|222438953|gb|EEE45632.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11] Length = 239 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 91/242 (37%), Positives = 140/242 (57%), Gaps = 9/242 (3%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I FD ETTGL+ + DR++EIG VEL+++ T + V++ P R A K+HG+ Sbjct: 1 MREISFDTETTGLNPRGGDRLVEIGGVELINHVPTGNAYHVYINPQ-RDMPEGAFKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++EFL DKP F + EF +F + + HNA FD+GFIN EL+R + + +++ID Sbjct: 60 SEEFLSDKPLFEQVADEFLEFVGD--GTLVIHNAAFDMGFINMELERCGRRTISNTQVID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFG 184 TL IARRKHPS N L++LC RYGI S R KHGALLD+ +L++VY++M+ + Sbjct: 118 TLEIARRKHPSGPNSLDALCSRYGIDNSKRVKHGALLDAEILAEVYLEMIGGKQRALILD 177 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK----EELDEHDKTIQTLGKNAIWDRY 240 + + + P + +P T ++ EE H + +G +A+W +Y Sbjct: 178 PDEEDGLIGSGDAGSEPGELGSFKARPRPTPLSALLRGEEFAAHKAFVAGMGDSALWKKY 237 Query: 241 IS 242 + Sbjct: 238 VG 239 >gi|330503134|ref|YP_004380003.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] gi|328917420|gb|AEB58251.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] Length = 252 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 86/253 (33%), Positives = 128/253 (50%), Gaps = 9/253 (3%) Query: 1 MIRKNKM-RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M +N + R +V D ETTG+ RIIEIG VELL T R F V+L P+ R+ Sbjct: 1 MTTENTVKRYVVLDTETTGMPVTDGHRIIEIGCVELLGRRLTGRHFHVYLNPD-REIDEG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKD 116 A+ +HGIT+E++ DKP F + EF++F A + F Q D Sbjct: 60 AIAVHGITNEYVADKPRFREVADEFYEFIKGAQLIIHNAAFDVGFINNEFALLGQSERAD 119 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 D ++DTL +AR +HP RN L++LCKRYG+ S+R HGALLDS +L+DVY+ M Sbjct: 120 VSDYCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSNRELHGALLDSEILADVYLAMTG 179 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA- 235 G + ++ + ++ T R + R ++EEL H + + K+A Sbjct: 180 GQTNLSLAGDGADGDGSGRQQATPIRRLDPSRARTRVIRASEEELAAHMARLAVIEKSAG 239 Query: 236 ---IWDRYISSNQ 245 +W + S + Sbjct: 240 GPSLWAQLEKSPE 252 >gi|39933378|ref|NP_945654.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris CGA009] gi|39653003|emb|CAE25745.1| putative DNA polymerase III epsilon chain [Rhodopseudomonas palustris CGA009] Length = 232 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 99/238 (41%), Positives = 140/238 (58%), Gaps = 9/238 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T RT+ +L P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHQYLNPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + EF +F + A + HNA FD+GFINAEL R+++ P+ R++D Sbjct: 60 SSEFLADKPLFAHVADEFLEFIGD--APLVIHNASFDIGFINAELSRLSRAPVPRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIG-ARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 ++ +R PL R+T +L+ H I T+G+ AIW Y+ + Sbjct: 177 ADVPVEVAGAASESRRR----QRPAPLPNRLTDADLEAHRTFIATMGEKAIWPDYLPA 230 >gi|118591451|ref|ZP_01548849.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM 12614] gi|118436123|gb|EAV42766.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM 12614] Length = 237 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 99/239 (41%), Positives = 149/239 (62%), Gaps = 9/239 (3%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I FD ETTGL+ + DR++EIG VEL+++ T +++ V++ P R EA ++HG+ Sbjct: 1 MREISFDTETTGLNPRGGDRLVEIGGVELINHVATGKSYHVYINPQ-RDMPEEAFRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F + EF +F + A + HNA FD+GFIN EL+R + + S+++D Sbjct: 60 SVEFLSDKPLFEHVADEFLEFVGD--ATLVIHNAAFDMGFINMELERAGRRTIPNSQVLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHPS N L++LC RYGI S R KHGALLD+ +L++VY++++ G Q G Sbjct: 118 TLDLARRKHPSGPNSLDALCSRYGIDNSKRIKHGALLDAEILAEVYLELIG-GRQTALGL 176 Query: 186 KTNEDRFFKE----EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 T+E+ E + + KR PL + + EL+ H I+ +G +AIW +Y Sbjct: 177 ITDEEESSSASASFEPGELGTFNARKRPTPLQRLLQESELEAHKAFIEGMGDSAIWSKY 235 >gi|83645320|ref|YP_433755.1| DNA polymerase III subunit epsilon [Hahella chejuensis KCTC 2396] gi|83633363|gb|ABC29330.1| DNA polymerase III, epsilon subunit [Hahella chejuensis KCTC 2396] Length = 240 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 98/240 (40%), Positives = 141/240 (58%), Gaps = 14/240 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S+ RIIEIG VE++D S T + V++ P R+ A ++HGI Sbjct: 1 MRQIVLDTETTGLETSQGHRIIEIGCVEVIDRSLTGNHYHVYINPE-REVDAGAFEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 ++EFL DKP F + +F DF + + HNA FDVGFI+ E D Sbjct: 60 SNEFLADKPKFKQVAQDFLDFISGAE--LVIHNAAFDVGFIDYEFSLLGAPFGKVSDYCS 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+KHP +N+L++LCKRYGI SHR HGALLDS +L+DVY+ M G + ++ Sbjct: 118 VVDTLMMARKKHPGQKNNLDALCKRYGIDNSHRDLHGALLDSEILADVYLAMTGGQTSLS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDR 239 +ED +EE V I+ +R R ++ EL EH + + + K A +W + Sbjct: 178 L---HSEDGGTEEEASEVRRIN-TQRPSLRVIRASEAELAEHARQLDAVEKAAGFSLWRK 233 >gi|330816255|ref|YP_004359960.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3] gi|327368648|gb|AEA60004.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3] Length = 240 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 75/238 (31%), Positives = 114/238 (47%), Gaps = 9/238 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VE+L+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRIIEIGCVEMLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + DF E + +ID Sbjct: 60 TTEFLSDKPKFAEVAHAICDFVRGAELIIHNAPFDIGFIDAEFERVGLPPLNQHCDGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 + D +++ L +++EL H + L K+ +W + Sbjct: 180 LGDGDDEGGASGAARVSLATL---ALPVLAASEDELAAHLAQLDDLDKSVKGACVWRK 234 >gi|163797056|ref|ZP_02191011.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199] gi|159177572|gb|EDP62125.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199] Length = 230 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 135/232 (58%), Gaps = 6/232 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD DRI+EIG VEL+++ T RT ++ P R A ++HG+ Sbjct: 1 MREIVLDTETTGLDPDTGDRIVEIGCVELINHVPTGRTLHHYINPE-RDMPLGAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL P F ++ E +F + A + HNA FD+ FINAEL+R+N+ + S+ +D Sbjct: 60 SSEFLSAYPVFGALADEILEFLGD--AVLVIHNASFDMKFINAELRRLNRPEIPMSQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +ARRK+P ++ L++LC+R+ I HR+ HGALLD+ LL+ VY++++ G Q + Sbjct: 118 TVQLARRKYPGAQASLDALCRRFEIDNGHRTLHGALLDADLLAAVYLELIG-GRQPDLAL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + +T + +P + +EL H ++++ K+ IW Sbjct: 177 AAQKPSDESPGSRTAEHREARPYREPRPHAPSADELAAHRTFLESI-KDPIW 227 >gi|163854939|ref|YP_001629237.1| DNA polymerase III subunit epsilon [Bordetella petrii DSM 12804] gi|163258667|emb|CAP40966.1| DNA polymerase III, epsilon chain [Bordetella petrii] Length = 241 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 90/240 (37%), Positives = 132/240 (55%), Gaps = 15/240 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTGLD + RI+EIG VE+++ T ++L P+ R + PEAL +HG+ Sbjct: 1 MRQIIFDTETTGLDPSQGHRIVEIGCVEIVNRVVTGNHLHIYLNPD-RDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--I 123 T EFL DKP F+ + +F +F IAHNA FDV F NAEL I + L + Sbjct: 60 TTEFLADKPRFADVAQQFLEFIQGAE--LIAHNAAFDVKFFNAELSMIGRGDLSQYCALV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L AR +P RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M G + Sbjct: 118 TDSLQHARTLYPGKRNSLDALCDRHGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 + S+L T +EL EH++ + +L K+ +W + Sbjct: 178 DVDDASQGGGAGIALGAFDSSVLP-----VLAATADELAEHEEYLASLDKSVGGACVWRK 232 >gi|90021666|ref|YP_527493.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40] gi|89951266|gb|ABD81281.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40] Length = 238 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 93/241 (38%), Positives = 132/241 (54%), Gaps = 13/241 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + RIIEIG VEL++ T R + ++ P R+ A+++HGI Sbjct: 1 MRQIVLDTETTGLEPSQGHRIIEIGCVELINRKLTGRHYHQYIKPE-REIDEGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 T+EFL DKP F I EF F + + HNA FDVGF+N E R + D Sbjct: 60 TNEFLADKPVFKDIADEFMAFVDGAE--LVIHNAPFDVGFLNHEFNLLGRGSTVINDRCS 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL++AR KHP +N+L++LCKRYG S R HGALLD+ +L+DVY+ M G + + Sbjct: 118 ILDTLALARNKHPGQKNNLDALCKRYGADNSARDLHGALLDAEILADVYLLMTGGQTNLA 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 G + ++ V R R + EEL H+K + + K +W Sbjct: 178 LGGAGSSSGMDDGGEELVR--VSADRKPLPIIRASAEELALHEKKLAEIDKASGGECLWL 235 Query: 239 R 239 + Sbjct: 236 K 236 >gi|332141113|ref|YP_004426851.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|327551135|gb|AEA97853.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str. 'Deep ecotype'] Length = 239 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 82/238 (34%), Positives = 125/238 (52%), Gaps = 12/238 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D K RIIEIG VE+++ T F V++ P GR EA+++HGI Sbjct: 1 MRQIVLDTETTGIDPKEGHRIIEIGCVEVVNRRLTGNHFHVYINP-GRHIEQEAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123 T+EFL DKP+F+ + EF +F ++ K + Sbjct: 60 TNEFLTDKPTFAQVAQEFVNFIKGAQLVIHNAPFDVGFMDHEFGMEPSTKGVITNQICDV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL++AR+ HP +N+L++LCKRYGI SHR+ HGALLD+ +L+DVY+ M G +++ Sbjct: 120 LDTLTLARQMHPGQKNNLDALCKRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTKLKL 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238 E T K +K + + +EL +H+ + + K +W Sbjct: 180 A-----SSGGSETDSTAIRRVQRKTNKLKVIKASADELTQHEARLDIVEKAGGKCLWR 232 >gi|240849687|ref|YP_002971075.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup] gi|240266810|gb|ACS50398.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup] Length = 235 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 103/234 (44%), Positives = 145/234 (61%), Gaps = 3/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD + DRIIEIG VE++D T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGRQFHVYLNPEGVIIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LK++ SFS I EF +F AHNA FD+GFINAEL+R+NK + I+DT Sbjct: 61 NERLKNEKSFSDIVDEFLEFIKGATMI--AHNASFDIGFINAELKRVNKPLISVDNILDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRK P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+++ G Q GF Sbjct: 119 LAMARRKFPMGPNSLDILCKRFGIDNSHRVLHGALLDAEILADVYIELIG-GKQGVLGFG 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + + ++ R + L +R++ +E H I T+G+ A+W+ + Sbjct: 178 NRRGVDEHIQNDKDTSYAVKIRPQALPSRLSMQEKRLHADFINTMGEKALWNNF 231 >gi|260576103|ref|ZP_05844096.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2] gi|259021583|gb|EEW24886.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2] Length = 231 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 91/235 (38%), Positives = 137/235 (58%), Gaps = 6/235 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + RI+EIGA+EL ++ T RTF +L P R EA +HG+ Sbjct: 1 MREIVLDTETTGFEPSEGHRIVEIGALELFNHLPTGRTFHKYLNPE-RSMPKEAFDVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+ KP F ++ EF +F + A + HNA FD+ F+NAEL N L R +D Sbjct: 60 GDDFLRGKPLFRAVAREFLEFIGD--ATLVIHNASFDMKFLNAELAAANLPLLPFERALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +AR+K P S L++LC+R+G+ S R KHGALLDS +L++VY++++ G Q + Sbjct: 118 TVLMARKKFPGSPASLDALCRRFGVDNSGREKHGALLDSEILAEVYLELIG-GRQPDLVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ++ + +T + R PL +T+EE H + LG +AIW + Sbjct: 177 AQHQSTKSGDTLETF-DWRPRPRSVPLPPGLTQEEAAAHTAFVARLGDDAIWLKR 230 >gi|116249771|ref|YP_765609.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. viciae 3841] gi|115254419|emb|CAK05493.1| putative DNA polymerase subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 240 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 110/239 (46%), Positives = 152/239 (63%), Gaps = 8/239 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +F+ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK F+ + + FF + AHNA FD+GFINAE RI P+ P R++DT Sbjct: 61 DEFLKDKQPFAEVAEQILTFFGDAKWI--AHNATFDMGFINAEFARIGLPPILPERVLDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+M+ G Q G Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIG-GRQAALGLG 177 Query: 187 TNEDRFFKEE-----KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + V +LL+R +PL R+++ E H+ + LG+ ++W +Y Sbjct: 178 MVGKSNQAARGEMGMEDDVVIAALLERPRPLAPRLSQTEEQAHEALVAKLGEKSVWAKY 236 >gi|115522405|ref|YP_779316.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisA53] gi|115516352|gb|ABJ04336.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisA53] Length = 229 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 92/236 (38%), Positives = 135/236 (57%), Gaps = 9/236 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+L+ T + + ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEILNRMPTGQIYHCYINPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL KP F+ + EF F + A + HNA FD+GFINAEL R+++ P+ R++D Sbjct: 60 SAEFLSTKPLFAEVAEEFLAFIAD--APLVIHNASFDIGFINAELARLSQPPIPRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VY+ ++ Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLIG-ARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 E + +R+ L R++ + + H + TLG IW+ Y+ Sbjct: 177 AETGS----ERASRAADAPRRQRETALVARVSDADREAHRAFVATLGDKPIWNEYL 228 >gi|254786149|ref|YP_003073578.1| DNA polymerase III subunit epsilon [Teredinibacter turnerae T7901] gi|237685417|gb|ACR12681.1| DNA polymerase III, epsilon subunit [Teredinibacter turnerae T7901] Length = 239 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 91/241 (37%), Positives = 138/241 (57%), Gaps = 13/241 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + RIIEIG VEL + T + F ++ P+ R+ A+++HGI Sbjct: 1 MRQIVLDTETTGLEPEQGHRIIEIGCVELFNRKLTGKHFHQYIRPD-REIDEGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSR 122 T+EFL DKP F+ I +F F + + HNA FDVGF++ EL+ +N+ + Sbjct: 60 TNEFLADKPVFAQIADDFLTFIGDAE--LVIHNAPFDVGFLDHELRLLNRGLAPIRERCG 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL ARRKHP +N+L++LCKRY + S R HGALLD+ +L+DVY+ M G + + Sbjct: 118 VLDTLVYARRKHPGQKNNLDALCKRYMVDNSQRDLHGALLDAEILADVYLAMTGGQTALA 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 G + + E++ + R + R EE++ H + TL K N +W Sbjct: 178 LGGQQGDGSGGDGEEQIIR--LSADRPRLKVLRANDEEIEAHKAKLATLDKASGGNCLWL 235 Query: 239 R 239 + Sbjct: 236 Q 236 >gi|254466659|ref|ZP_05080070.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I] gi|206687567|gb|EDZ48049.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I] Length = 241 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 135/246 (54%), Gaps = 21/246 (8%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVEL ++ T +TF ++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELYNHMPTGKTFHEYINPE-RSMPAEAFSVHGI 59 Query: 66 TDE-------------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L+DKP F+ I +F DF + + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQKPEPGAVTLRDKPVFAKIGRKFLDFVQDSR--LVIHNASFDMKFLNAELDW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + L + +DTL++AR++ P S L++LC+R+ I ++R+ HGALLDS +L+DVY+ Sbjct: 118 MGLPKLPMDQALDTLAMARKRFPGSPATLDALCRRFNIDNTNRTLHGALLDSEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ G Q +FG + + + + R PL RIT EE H+ + LG Sbjct: 178 ELIG-GRQPDFGLSAQSSSSSAQVED---DWRPVPRSAPLPARITAEEQAAHEAFVAKLG 233 Query: 233 KNAIWD 238 A+W Sbjct: 234 DAALWK 239 >gi|307824649|ref|ZP_07654873.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum SV96] gi|307734303|gb|EFO05156.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum SV96] Length = 241 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 132/239 (55%), Gaps = 13/239 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTGL+ + RIIEIG VEL++ T + F ++ P R A+++HGIT Sbjct: 9 RLVVLDTETTGLNPQEGHRIIEIGCVELVNRRLTGKRFHTYINPE-RIIDDGAIEVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSRI 123 ++FL+DKP F+ + +F F + + HNA FDVGFIN E R D S++ Sbjct: 68 NQFLEDKPCFADVVKDFIAFIQDAE--LVIHNAPFDVGFINYEFSRLNSQTGTVTDYSKV 125 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL+ AR+KHP RN L++LCKRYGI SHR HGALLD+ +L+DV++ M G S + Sbjct: 126 FDTLTYARKKHPGQRNSLDALCKRYGIDNSHRDLHGALLDAEILADVFLLMTGGQSSL-- 183 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWDR 239 + R R R T+EEL+ H + ++ + K IW++ Sbjct: 184 -LDEGQGRQEGAAVNREIKHLSADRPALKIIRCTEEELNAHQQRLEAIEKAGGGCIWNQ 241 >gi|254295485|ref|YP_003061508.1| DNA polymerase III subunit epsilon [Hirschia baltica ATCC 49814] gi|254044016|gb|ACT60811.1| DNA polymerase III, epsilon subunit [Hirschia baltica ATCC 49814] Length = 233 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 138/238 (57%), Gaps = 6/238 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGL +K DRIIE+GAVE++D T R F + P R+ S + +++ GI Sbjct: 1 MREIVFDTETTGLSAKDGDRIIELGAVEIVDLLPTGREFHRLIYPE-RQVSEDTIRITGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE LK KP FS +++ +AHNA+FD GF+N E++R+ R +D Sbjct: 60 TDEMLKGKPVFSDPSVYKEFLDFIEDSPLVAHNAEFDRGFLNEEMRRVGGPDFPKERCVD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR K P + L++LCKR+ I+++ R H A++DS LL+ VY++ + GG +F F Sbjct: 120 TLALAREKFPGASATLDALCKRFDISLAKRDVHTAVVDSQLLASVYLE-LRGGRAHSFEF 178 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 E+ + + +R K L + +T+EE H I T + +W++ ++ Sbjct: 179 ---ENEGQSDAEVAFKRTQRRQRPKKLRSFLTEEENAAHQSFIATFDETPVWNKILTK 233 >gi|161170263|gb|ABX59233.1| polymerase III epsilon subunit uncultured proteobacterium [uncultured marine bacterium EB000_55B11] gi|297183792|gb|ADI19915.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 230 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 97/234 (41%), Positives = 145/234 (61%), Gaps = 7/234 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV+D ETTG D DRI+EIGAVEL + T R + ++ P R P A ++HG+ Sbjct: 1 MREIVWDTETTGFDPFAGDRIVEIGAVELNQHLPTGRVYHQYINPE-RDMPPGAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FLKD P FS+I +F DF + A IAHNAKFD+ FINAEL+ N + ++ +D Sbjct: 60 SIDFLKDFPVFSNIARDFIDFVGD--ATLIAHNAKFDMKFINAELKNANLPQVPLNQSLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IAR+K P ++N L++LC+R+ I S R KHGALLDS +L++VY++++ G Q +F Sbjct: 118 TLEIARKKFPGAQNSLDALCRRFNIDNSSRQKHGALLDSEILAEVYLELVG-GRQPDFSL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + + L R K L + +T E H+ I++LG +A+W++ Sbjct: 177 SLVGQSKLESTSDSS--YAALSRPKKLNSLVTDVEKKAHNDFIKSLGTSAVWNK 228 >gi|86747524|ref|YP_484020.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris HaA2] gi|86570552|gb|ABD05109.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris HaA2] Length = 231 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 94/238 (39%), Positives = 134/238 (56%), Gaps = 9/238 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T + + ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIYNRMPTGQVYHQYINPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + F DF + A + HNA FD+GFINAEL R+++ + R++D Sbjct: 60 SSEFLADKPVFAQVADAFIDFIGD--APLVIHNASFDIGFINAELARLSRAAIPRERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIG-ARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 T +R L R+T +L+ H I +G AIW+ Y ++ Sbjct: 177 AEVPSERSGAGGDT----PRRQRSIALTPRVTDADLEAHRAFIALMGDKAIWNEYTAA 230 >gi|238026771|ref|YP_002911002.1| DNA polymerase III subunit epsilon [Burkholderia glumae BGR1] gi|237875965|gb|ACR28298.1| DNA polymerase III, epsilon subunit [Burkholderia glumae BGR1] Length = 240 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 76/238 (31%), Positives = 114/238 (47%), Gaps = 9/238 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VE+L+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRIIEIGCVEMLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I DF E + + +ID Sbjct: 60 TTEFLSDKPKFAEIAQALCDFVRGGELIIHNAPFDIGFIDAELERLGMPPLLEHCNGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A+ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 + E + + + L +++EL H + L K+ +W + Sbjct: 180 LGDTGDRGGETGGSRVSFASLDLP---VIAASEQELAAHQAQLDDLDKSVKGACVWRQ 234 >gi|307297035|ref|ZP_07576851.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum L-1] gi|306877561|gb|EFN08789.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum L-1] Length = 230 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 129/232 (55%), Gaps = 7/232 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTG D DR++EIG +EL + T RTF + P R A +HG+ Sbjct: 1 MREIIFDTETTGFDPASGDRLVEIGCIELFNRVPTGRTFHAYYNPQ-RSMPAAAEAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D FL+DKP F E F + + +AHNA+FD GF+N EL+ + R+ID Sbjct: 60 SDGFLRDKPLFGHGVQELLAFLEDSH--LVAHNARFDFGFLNHELKLCGLPEVSMDRMID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T++IAR+ HP +++ L++LC RYGI SHR KHGALLD+ LL+ +YI++ G QI G Sbjct: 118 TVAIARQIHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAQLYIELTG-GRQIGLGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 E++ + R + EEL+ H + TL K +W Sbjct: 177 AQEEEKLIVNMELAAKAAVRPVRPA-RVFAASAEELERHAAFVATLEK-PLW 226 >gi|241206948|ref|YP_002978044.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860838|gb|ACS58505.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 240 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 111/239 (46%), Positives = 152/239 (63%), Gaps = 8/239 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +F+ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK F + + FF + AHNA FD+GFINAEL RI P+ P R++DT Sbjct: 61 DEFLKDKQPFGEVAEQILTFFGDAKWI--AHNATFDMGFINAELARIGLPPILPERVLDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF- 185 LS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+M+ G Q G Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIG-GRQAALGLG 177 Query: 186 ----KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 R + V ++L+R +PL R++ E H+ + LG+ ++W +Y Sbjct: 178 MVGRSNQAARGDMGMEDDVVIAAVLERPRPLAPRVSDIEEQAHEALVAKLGEKSVWAKY 236 >gi|92115747|ref|YP_575476.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14] gi|91798641|gb|ABE61016.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14] Length = 239 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 95/239 (39%), Positives = 135/239 (56%), Gaps = 9/239 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV DIETTGLD + DR++EIG VE+ + T +TF ++ P R EA +HG+ Sbjct: 1 MREIVLDIETTGLDPLRGDRVVEIGCVEIFNRMPTGQTFHRYINPE-RDMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL +KP F+ I +F +F + A + HNA FD+ FINAEL R+ + R++D Sbjct: 60 SSEFLAEKPLFTHIVDDFLEFIGD--APLVIHNASFDISFINAELDRLKMRTIGRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIG-ARQPQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 R ++ +R PL R+T + H + TLG+ AIW + + Sbjct: 177 AETASRRTG----GTLDMPRRQRTVPLAPRVTDADRIAHRDFVATLGEKAIWKEFAGTE 231 >gi|254283824|ref|ZP_04958792.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR51-B] gi|219680027|gb|EED36376.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR51-B] Length = 244 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 130/247 (52%), Gaps = 11/247 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTGL+ + RIIEIG VEL++ T + ++ P R+ P A+++HGI Sbjct: 1 MRHVVLDTETTGLEVTQGHRIIEIGCVELVNRKLTGNHYHQYVQPQ-REIDPGAMEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSR 122 T +FL DKP+F + EF F + HNA FDVGFI+AEL R D R Sbjct: 60 TPDFLADKPTFDRVADEFLAFIDGAELI--IHNAPFDVGFIDAELDRLGARRTAVADHCR 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + D+L +ARRKHP RN L++LC+RYG+ S R+ HGALLD+ +L+DV++ M G + + Sbjct: 118 VTDSLVLARRKHPGQRNSLDALCQRYGVDNSTRTLHGALLDAEILADVFLLMTGGQTSLG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWD 238 + R R + EEL H++ + + + IW Sbjct: 178 LSDDEEGSLDTADNPDGGIRRLPTSRPPLRVMRASAEELARHEQRLDAIAAASGGPVIWR 237 Query: 239 RYISSNQ 245 S+ + Sbjct: 238 EQQSAAE 244 >gi|90421821|ref|YP_530191.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisB18] gi|90103835|gb|ABD85872.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisB18] Length = 231 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 96/235 (40%), Positives = 135/235 (57%), Gaps = 9/235 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T +TF ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGQTFHRYINPE-RDMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL KP F+ + EF +F E A + HNA FD+GFINAEL +I + P+ R++D Sbjct: 60 SAEFLSTKPLFAEVVDEFLEFIAE--APLVIHNASFDIGFINAELGKIARPPIPRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILA 177 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + R + +R+ PL R+T + H + + TLG IW+ Y Sbjct: 178 EAAPSRSNRPGDA-----PRRQRETPLAARVTDADRIAHREFVATLGDKPIWNEY 227 >gi|299133202|ref|ZP_07026397.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2] gi|298593339|gb|EFI53539.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2] Length = 230 Score = 152 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 95/239 (39%), Positives = 140/239 (58%), Gaps = 10/239 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD+ + DR++EIG VE+ ++ T +T+ V++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDALRGDRLVEIGCVEMFNHMPTGQTYHVYINPE-RDMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+++ +F F + A I HNA FD+GFIN EL+R+ + + R++D Sbjct: 60 SSEFLSDKPLFAAVAEDFLTFIGD--APLIIHNASFDIGFINMELERVKRAAIPRERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ Q + Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIG-ARQSSLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 + + + PL R+T EE++ H + TLG N IW + + Sbjct: 177 AETRTTSIRVVEVERRVREV-----PLPPRMTPEEIEAHRAFVATLGDNPIWREFSDAE 230 >gi|46201693|ref|ZP_00054536.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum magnetotacticum MS-1] Length = 230 Score = 152 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 91/234 (38%), Positives = 132/234 (56%), Gaps = 6/234 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D R++EIG VEL ++ T F + P R EA K+HG+ Sbjct: 1 MREIVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGEVFHRYCNPE-RDMPEEAFKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ I ++F +F + A + HNA+FD+ FINAEL R+ L SR ID Sbjct: 60 SVEFLSDKPLFAEIVADFLEFIGD--APLVIHNAEFDMRFINAELARLGFPALPMSRSID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +AR+K P ++ +L++LC+R+ I +HR+KHGALLDS LL++VY++++ G Q Sbjct: 118 TVMMARKKFPGAQANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQLIG-GRQPGLEL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + +P T+EE H + L KNA+W R Sbjct: 177 GGGKGNGAGSAASASTQEVKRDFREPRPHGPTEEETAAHTAFVAKL-KNAVWLR 229 >gi|304320447|ref|YP_003854090.1| putative DNA polymerase III subunit epsilon and related 3'-5'exonuclease [Parvularcula bermudensis HTCC2503] gi|303299349|gb|ADM08948.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Parvularcula bermudensis HTCC2503] Length = 245 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 87/241 (36%), Positives = 128/241 (53%), Gaps = 11/241 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD R++EIGAVE+++ + T RTF V++ P R A ++H + Sbjct: 1 MRQIVFDTETTGLDPLDGHRVVEIGAVEMVNGALTGRTFHVYVNPE-RDMPEAAYRVHKL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 + +FL DKP F + + A +AHNA FD F+ L I P I Sbjct: 60 SSQFLADKPIFKDPAIGQAFYQFCEGAVLVAHNASFDCKFMQHHLDEIGLPWAWGEPGDI 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +DTL IAR++ P S + L++LC+R+GI HGALLDS LL++VYI++ G Q Sbjct: 120 VDTLQIARKRFPGSPSSLDALCQRFGIDLTEREAQGHGALLDSRLLAEVYIELTG-GRQG 178 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 F ++ + + + P +R P +T EE H I + K+ +W RY Sbjct: 179 GLIFDPDQSVGGRRKARGEP---ARQRPGPRPQLLTDEEHAAHAALIGEM-KDPLWARYT 234 Query: 242 S 242 + Sbjct: 235 A 235 >gi|103488315|ref|YP_617876.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis RB2256] gi|98978392|gb|ABF54543.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis RB2256] Length = 231 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 94/232 (40%), Positives = 133/232 (57%), Gaps = 6/232 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTG D + DR++EIG VEL+D +T TF + P R A +HG+ Sbjct: 1 MREIIFDTETTGFDPRNGDRLVEIGCVELIDRRETGVTFHAYFNPE-RDMPAAAEAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL DKP F++ E DFF + A IAHNA FD GF+NAEL+RI + PLD +R+ Sbjct: 60 SSQFLSDKPLFAARVDELLDFFGD--APLIAHNAAFDFGFVNAELERIGRPPLDMARMCC 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +AR+ HP +++ L++LC RYGI SHR KHGALLD+ LL+ +YI+M G QI G Sbjct: 118 TVQMARKLHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAHLYIEMTG-GRQIGLGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 ++ +P + EL H + + L +W Sbjct: 177 ASSSAALPTASLLAARRDPARPFREPRPHMASAAELARHAEFVAGLN-QPLW 227 >gi|85709813|ref|ZP_01040878.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1] gi|85688523|gb|EAQ28527.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1] Length = 234 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 141/239 (58%), Gaps = 11/239 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++FD ETTGLD K DR++EIG VE++ +T R++ + P R A +HG+ Sbjct: 1 MREVIFDTETTGLDPKTGDRMVEIGCVEMVGRVETGRSYHAYYNPE-RDMPSAAEAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + FL+ KP FS E +F + A +AHNA FD GF+NAEL+RI ++ + R++D Sbjct: 60 SISFLETKPRFSETADELLEFLGD--APLVAHNAGFDFGFLNAELERIGRESIAMDRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T++IAR+KHP ++ L++LC RYGI SHR KHGALLD+ LL+ VY+++ G QI Sbjct: 118 TVAIARKKHPGAKLSLDALCTRYGIDRSHRVKHGALLDAELLAQVYVELTG-GRQIGLEL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKR-----DKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + V + +R +P ++ EL H + ++ + K+AIW R Sbjct: 177 AADTVEDPHAAAEKVVETVIGRRSDQPFREPRPHAASENELARHREFVEGI-KDAIWAR 234 >gi|109898679|ref|YP_661934.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica T6c] gi|109700960|gb|ABG40880.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica T6c] Length = 235 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 98/241 (40%), Positives = 142/241 (58%), Gaps = 14/241 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D + RIIEIG VELL+ T TF V++ P R EA+++HGI Sbjct: 1 MRQIVLDTETTGIDPRQGHRIIEIGCVELLNRRLTGNTFHVYVNPQ-RLIEQEAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPS 121 T+E+L DKP F+ + ++F F + + HNA FDVGF++ E K D Sbjct: 60 TNEYLLDKPLFADVAADFVKFISGAQ--LVIHNAPFDVGFMDHEFARVAAMAGKKTSDMC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR+ HP +N+L++LCKRYGI SHR HGALLDS +L+DVY+ M G + + Sbjct: 118 TVLDTLEMARQIHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLMMTGGQTDL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238 N K+N D + E+ + L ++ R T +EL EH+K + + K + +W Sbjct: 178 NLSGKSNSDGGSQVERIRRLDPQL---NQLKVLRATADELVEHEKRLDLVNKEGGSCLWR 234 Query: 239 R 239 Sbjct: 235 E 235 >gi|87198139|ref|YP_495396.1| DNA polymerase III, epsilon subunit [Novosphingobium aromaticivorans DSM 12444] gi|87133820|gb|ABD24562.1| DNA polymerase III, epsilon subunit [Novosphingobium aromaticivorans DSM 12444] Length = 230 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 92/235 (39%), Positives = 130/235 (55%), Gaps = 6/235 (2%) Query: 6 KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 MR+IVFD ETTGLD + DR++EIG +E+ + T F + P R EA +HG Sbjct: 1 MMREIVFDTETTGLDPRSGDRLVEIGCIEMFNRVPTGAVFHCYFNPE-RDMPAEAEAVHG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ++ FL DKP F+ + F + AHNA FD GFIN EL+ ++P+ R++ Sbjct: 60 LSIAFLSDKPKFAEKADDLLAFIADSPMV--AHNAGFDFGFINNELELCGREPVSRDRMV 117 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DT++IARRKHP ++ L++LC RYGI SHR+KHGALLD+ LL+ +Y++ + GG QI Sbjct: 118 DTVAIARRKHPGAKLSLDALCSRYGIDRSHRTKHGALLDAELLAQLYVE-LQGGRQIGLE 176 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 EE TV + P + EEL H + + + IW R Sbjct: 177 LAAQSAIAVTEEVVTVTSSVTRVFRSPRPHSASAEELARHAEFMAGFSE-PIWSR 230 >gi|332993503|gb|AEF03558.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2] Length = 238 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 80/238 (33%), Positives = 127/238 (53%), Gaps = 12/238 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D K R+IEIG VEL++ T F V++ P GR+ EA+ +HGI Sbjct: 1 MRQIVLDTETTGIDPKEGHRVIEIGCVELVNRKLTGNHFHVYINP-GRQIEQEAIDVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123 T+EFL DKP+F + +F +F ++ + + Sbjct: 60 TNEFLTDKPTFRDVAEDFVNFIRGAQLVIHNAPFDVGFMDHEFGMEPKTRGVITKDICSV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL++AR+ HP +N+L++LCKRYGI SHR HGALLD+ +L+DVY+ M G +++N Sbjct: 120 LDTLAVARKMHPGQKNNLDALCKRYGIDNSHRELHGALLDAEILADVYLLMTGGQTKLNL 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238 K + + ++ N + K + + +EL +H+ + + K +W Sbjct: 180 ASKGSGENQSDALRRLNRNGN-----KLKVIKASADELAQHESRLDIVEKAGGKCLWR 232 >gi|294009991|ref|YP_003543451.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S] gi|292673321|dbj|BAI94839.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S] Length = 230 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 92/232 (39%), Positives = 132/232 (56%), Gaps = 7/232 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTG D DR++EIG +ELL+ T RTF + P R A +HG+ Sbjct: 1 MREIIFDTETTGFDPASGDRLVEIGCIELLNRVPTGRTFHAYYNPQ-RSMPAAAEAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D FL+DKP FS E F + + +AHNA+FD GF+N EL+ + +R+ID Sbjct: 60 SDSFLRDKPLFSHGVEELLAFLEDSH--LVAHNARFDFGFLNHELRLCGLPEVSMARMID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T++IAR+ HP +++ L++LC RYGI SHR KHGALLD+ LL+ +YI++ G QI G Sbjct: 118 TVAIARQLHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAQLYIELTG-GRQIGLGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 E++ + R + EEL+ H + TL K +W Sbjct: 177 AQEEEKRVANMELAAEVAVRPVRPA-RVFAASAEELERHAAFVATLEK-PLW 226 >gi|114769767|ref|ZP_01447377.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [alpha proteobacterium HTCC2255] gi|114549472|gb|EAU52354.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [alpha proteobacterium HTCC2255] Length = 230 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 97/234 (41%), Positives = 144/234 (61%), Gaps = 7/234 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV+D ETTG D DRI+EIGAVEL + T R + ++ P R P A ++HG+ Sbjct: 1 MREIVWDTETTGFDPFAGDRIVEIGAVELNQHLPTGRVYHQYINPE-RDMPPGAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FLKD P FS+I +F DF + A IAHNAKFD+ FINAEL+ N + ++ +D Sbjct: 60 SIDFLKDFPVFSNIARDFIDFVGD--ATLIAHNAKFDMKFINAELKNANLPQVPLNQSLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IAR+K P ++N L++LC+R+ I S R KHGALLDS +L++VY++++ G Q +F Sbjct: 118 TLEIARKKFPGAQNSLDALCRRFNIDNSSRQKHGALLDSEILAEVYLELVG-GRQPDFSL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + + L R K L + +T E H+ I++L +AIW++ Sbjct: 177 SLVGQSKLESTSDSS--YAALSRPKKLNSLVTDVEKKAHNDFIKSLCASAIWNK 228 >gi|91974903|ref|YP_567562.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisB5] gi|91681359|gb|ABE37661.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisB5] Length = 231 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 98/235 (41%), Positives = 137/235 (58%), Gaps = 9/235 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T + F ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIYNRMPTGQAFHRYINPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + EF DF + A + HNA FD GF+NAEL R+++ + R++D Sbjct: 60 SAEFLADKPLFAQVVDEFLDFIGD--APLVIHNASFDAGFLNAELARLSRAAIPRERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILA 177 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + +R + K +R PL R+T+ +LD H I T+G AIW Y Sbjct: 178 EVPSERAGQGGDK-----PRRQRSTPLAARVTELDLDAHRAFIATMGDKAIWKEY 227 >gi|75674304|ref|YP_316725.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi Nb-255] gi|74419174|gb|ABA03373.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi Nb-255] Length = 239 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 95/239 (39%), Positives = 139/239 (58%), Gaps = 9/239 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T +TF ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEMFNRMPTGQTFHRYINPE-RDMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL DKP F+ + EF +F + A + HNA FD+ FINAEL R+ + + R++D Sbjct: 60 SSDFLADKPLFAHVVDEFLEFIGD--APLVIHNASFDISFINAELDRLKRQAIGRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIG-ARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 R ++ + +R PL +R+T + H + I TLG+ AIW ++ + Sbjct: 177 VETAPR----QRGGSLEMPRRQRTVPLASRVTAADRIAHREFIATLGEKAIWMEFLEQD 231 >gi|217978678|ref|YP_002362825.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2] gi|217504054|gb|ACK51463.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2] Length = 235 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 98/237 (41%), Positives = 138/237 (58%), Gaps = 10/237 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD K RI+EIGAVELL+ T ++F V++ P R EA ++HGI Sbjct: 1 MREIVLDTETTGLDPKQGHRIVEIGAVELLNSIPTGQSFHVYIHPE-RDMPDEAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL KP F+ I DF E AHNA+FD F+NAE R +PL R++D Sbjct: 60 SLEFLTGKPLFAEIVPALIDFLGEAKII--AHNAEFDFRFLNAEFLRAEAEPLAWERVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++ARR+ P + N L++LC R+G+ S R KHGALLD+ +L++VY ++ G Q F Sbjct: 118 TLALARRRFPGASNSLDALCARFGVDTSRRVKHGALLDAEILAEVYAELCG-GRQAALVF 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 E + R +PL +++ +E+ H + TLG+ AIW Y+S Sbjct: 177 GGGLGSDAATEAALMRE-----RPEPLAPQLSPQEVAAHAAFVATLGEKAIWQAYLS 228 >gi|319898197|ref|YP_004158290.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73] gi|319402161|emb|CBI75687.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73] Length = 235 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 103/235 (43%), Positives = 146/235 (62%), Gaps = 4/235 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGL+ ++DRIIEIG +E+++ T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNPQGVVIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LKD+ F I DF + AHNA FD+GF+NAEL+R+NK + + +IDT Sbjct: 61 NERLKDEKKFDDIVDALLDFIDGATIV--AHNANFDIGFLNAELERVNKPLVSINHVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L+IARR+ P+ N L+ LCKR+GI SHR HGALLD+ +L+DVYI+++ G Q FGF Sbjct: 119 LAIARRRFPTGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIELIG-GKQGIFGFD 177 Query: 187 TNEDRFFKEEKKTVPNISLLK-RDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ED + K R PL R++K+E D H I+ +G A+W+ + Sbjct: 178 NCEDFDVMSVQDGKNAFHTTKIRFHPLPQRLSKQEKDMHANLIKKIGDKALWNHF 232 >gi|206559631|ref|YP_002230392.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia J2315] gi|198035669|emb|CAR51556.1| DNA polymerase III, epsilon chain [Burkholderia cenocepacia J2315] Length = 244 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 115/243 (47%), Gaps = 9/243 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + + DF + + +ID Sbjct: 60 TTEFLSDKPKFAEVAHQILDFVKDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYI 241 + +++ L + +EL H + L K+ +W + Sbjct: 180 LDDASADGGAANGKRVSLAALDLP---VVVASDDELAAHQAQLDELDKSVKGTCVWRQPA 236 Query: 242 SSN 244 ++ Sbjct: 237 DTD 239 >gi|304392717|ref|ZP_07374657.1| DNA polymerase III, epsilon subunit [Ahrensia sp. R2A130] gi|303295347|gb|EFL89707.1| DNA polymerase III, epsilon subunit [Ahrensia sp. R2A130] Length = 249 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 95/240 (39%), Positives = 146/240 (60%), Gaps = 8/240 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M I+FD ETTGL +K DR+IEIGAVE+ D T RTF ++ P R+ P+AL++HGI Sbjct: 1 MHAIIFDTETTGLSAKDGDRVIEIGAVEMKDLIPTGRTFHQYIHPGDREIHPDALRVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E L D+P F ++ F DF + +AHNA FD+GF+NAE R+N P DP ++D Sbjct: 61 TMERLADEPRFEAVGQSFIDFCGDAM--LVAHNAPFDIGFLNAEYARMNLPPCDPELVLD 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ AR+K P +R L+ LC R+ I+ ++R HGALLD+ LL++V+I++M G+Q+ GF Sbjct: 119 TVQAARKKFPGARVSLDMLCDRFNISRANRVLHGALLDARLLAEVFIELMG-GAQVKMGF 177 Query: 186 KTNEDRFFK----EEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 + + ++ + +R + +T EE + H+ +GK A+W++Y+ Sbjct: 178 DDEAETDAQRADPRNRRQTQHPPQPQRPSAMVYELTPEERERHNAMRAKIGKGALWNQYL 237 >gi|319404918|emb|CBI78518.1| DNA polymerase III epsilon chain [Bartonella sp. AR 15-3] Length = 235 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 101/235 (42%), Positives = 146/235 (62%), Gaps = 4/235 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGL+ ++DRIIEIG +E+++ T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNPQGVVIPDEVIAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LKD+ +F I DF + AHNA FD+GF+NAEL R+NK + +IDT Sbjct: 61 NEHLKDEKNFEDIVDALLDFIDNATIV--AHNANFDIGFLNAELGRVNKPLVSSDNVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LSIARR+ P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+++ G Q F F Sbjct: 119 LSIARRRFPMGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIELIG-GKQGIFSFD 177 Query: 187 TNEDRFFKEEKKTVPNISLLK-RDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 E+ + + +K R + L R++K+E + H I+ +G A+W+R+ Sbjct: 178 NYENFDVMNVQDSKNVFYTVKMRSQALPQRLSKQEKNMHANLIKKIGDKALWNRF 232 >gi|209883542|ref|YP_002287399.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans OM5] gi|209871738|gb|ACI91534.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans OM5] Length = 230 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 98/239 (41%), Positives = 144/239 (60%), Gaps = 10/239 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD+ + DR++EIG VE+ ++ T +T+ V++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDALRGDRLVEIGCVEMFNHMPTGQTYHVYINPE-RDMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+++ EF +F + A I HNA FD+GFIN EL R+ + + R++D Sbjct: 60 STEFLADKPLFAAVADEFLEFIGD--APLIIHNASFDIGFINMELDRLKRAAIPCERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ Q + Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIG-ARQSSLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 E V ++ R+ PL +RIT EE + H + TLG + +W + ++ Sbjct: 177 AETERTQIH-----VVEVTRRVREVPLASRITVEEREAHRAFVATLGDHPLWAEFKDAD 230 >gi|56460794|ref|YP_156075.1| DNA polymerase III, epsilon subunit [Idiomarina loihiensis L2TR] gi|56179804|gb|AAV82526.1| DNA polymerase III, epsilon subunit [Idiomarina loihiensis L2TR] Length = 235 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 85/238 (35%), Positives = 129/238 (54%), Gaps = 13/238 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTG+D K RIIEIG VEL++ T F V++ P R EA+++HGI Sbjct: 1 MRQVVLDTETTGIDPAKGHRIIEIGCVELINRKLTGNHFHVYINPE-RVVEQEAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122 T++FL DKP F+ + +F +F + HNA FDVGF++AE RI D Sbjct: 60 TNDFLTDKPVFAQVVQDFIEFIKGSQ--LVIHNAPFDVGFMDAEFSRIRPAVGLTNDFCS 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR P RN L++LC+ Y + S R HGALLD+ +L+DVY+ M G + +N Sbjct: 118 VLDTLQLAREMRPGQRNSLDALCRAYDVDNSARELHGALLDAEILADVYLMMTGGQTALN 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIW 237 + + + + V + + R R T +E H + + + + +W Sbjct: 178 L---ASHGKDNQGGSQKVEHQRITNRPALKVLRATADEEALHQERLARVKEEGGHCLW 232 >gi|88703294|ref|ZP_01101010.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71] gi|88702008|gb|EAQ99111.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71] Length = 240 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 89/240 (37%), Positives = 128/240 (53%), Gaps = 12/240 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + RIIEIG VE+ + T R F ++ P R A+++HGI Sbjct: 1 MRQIVLDTETTGLEVSQGHRIIEIGCVEMENRQLTGRHFHRYINPE-RDIDAGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122 T FL DKP FS++ +F DF + I HNA FD+GF+++EL R + L Sbjct: 60 TATFLADKPVFSAVAKDFIDFVDGAE--LIIHNAPFDIGFLDSELSRWDASALPLAQRCD 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I DTL +AR +HP RN L++LC RYG+ S R HGALLD+ +L+DVY+ M Q Sbjct: 118 ITDTLIMARSRHPGQRNSLDALCGRYGVDNSSRELHGALLDAEILADVYLTMTG--GQTA 175 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWDR 239 N+D + R + + + EEL H+ + ++ G +W + Sbjct: 176 LALGGNDDDNQGRARVRGLRRLPADRVRLPVIQPSDEELAAHEGQLDSIAAAGAEPLWRQ 235 >gi|85714087|ref|ZP_01045076.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A] gi|85699213|gb|EAQ37081.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A] Length = 230 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 96/238 (40%), Positives = 138/238 (57%), Gaps = 9/238 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++E+G VE+ + T +TF ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPVRGDRLVELGCVEIFNRMPTGQTFHCYINPE-RDMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + EF +F + A I HNA FD+ FINAEL+R+ + + R++D Sbjct: 60 SSEFLADKPLFAQVVDEFLEFIGD--APLIIHNASFDISFINAELERLKRQVIGRERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ Q Sbjct: 118 TLLIARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIG-ARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 R + +R PL +R+T+ + H + TLG+ AIW +++ Sbjct: 177 TETTSRQLG----GTLELPRRQRTVPLASRVTEADRIAHRNFVATLGEKAIWTEFLAQ 230 >gi|85713113|ref|ZP_01044147.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145] gi|85693061|gb|EAQ31025.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145] Length = 236 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 84/238 (35%), Positives = 126/238 (52%), Gaps = 12/238 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG++ RIIEIG VEL+D T F V++ P R EA+ +HGI Sbjct: 1 MRQIVLDTETTGINPDDGHRIIEIGCVELIDRKPTGNHFHVYINPE-RVVEDEAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSR 122 T+E+L DKP F+ + F DF + HNA FDVG ++AE +R + D Sbjct: 60 TNEYLADKPVFAQVVDAFIDFIKGSQ--LVIHNAPFDVGHMDAEFKRLGKMYGKTYDYCD 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++D+L +AR K P RN L++LCK + + S R HGALLD+ +L+DVY+ M Q Sbjct: 118 VLDSLQLAREKRPGQRNSLDALCKAFHVDNSARELHGALLDAEILADVYLAMTG--GQTA 175 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIW 237 +E + + ++ R + R T +E ++H + + + G +W Sbjct: 176 LSLHGQNQDNENQEPGAIAHQAIKNRPQLKVLRATADEEEQHQQRLAIVKSEGGACLW 233 >gi|83313644|ref|YP_423908.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] gi|82948485|dbj|BAE53349.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] Length = 257 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 134/234 (57%), Gaps = 6/234 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D R++EIG VEL ++ T F + P R EA K+HG+ Sbjct: 28 MREIVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGSVFHRYCNPE-RDMPEEAFKVHGL 86 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL DKP F+ I ++F +F + + HNA+FD+ FINAEL R+ PL SR ID Sbjct: 87 SADFLSDKPLFAEIVADFLEFIGD--VPLVIHNAEFDMRFINAELTRLGFPPLPMSRSID 144 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +AR++ P ++ +L++LC+R+ I +HR+KHGALLDS LL++VY++++ G Q Sbjct: 145 TVMMARKRFPGAQANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQLIG-GRQPGLEL 203 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + + +P T+EE H + L KNA+W R Sbjct: 204 GGGKGNGAGGTANASTHQVTREFREPRPHGPTEEETAAHTAFVAKL-KNAVWLR 256 >gi|182680101|ref|YP_001834247.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182635984|gb|ACB96758.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 236 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 101/240 (42%), Positives = 145/240 (60%), Gaps = 9/240 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + RIIEIG +E+L T + F V++ P R +A+++HGI Sbjct: 1 MREIVLDTETTGLDPAEGHRIIEIGCIEILHTIPTGQIFHVYIDPQ-RDIPEDAVRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL KP F+ I SEF F + A+ +AHNA FD+ F+NAEL + +P+D R++D Sbjct: 60 TAEFLAGKPVFADIASEFLAFIGD--AKLVAHNAAFDMRFLNAELGLLGLEPIDSERVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++ARR+HP + N L++LC RYGI + R+KHGALLDS +L+DVY +++ G Q F Sbjct: 118 TLALARRRHPGASNSLDALCNRYGIDNTRRTKHGALLDSEILADVYAELLG-GRQAALTF 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245 +T + +R PL + ++ +E D H I LG AIW Y+ + Sbjct: 177 ETATAL----RQDNTHQTPFRQRPVPLESALSSQERDAHRAFIAKLGDKAIWVSYLPQPE 232 >gi|154251704|ref|YP_001412528.1| DNA polymerase III subunit epsilon [Parvibaculum lavamentivorans DS-1] gi|154155654|gb|ABS62871.1| DNA polymerase III, epsilon subunit [Parvibaculum lavamentivorans DS-1] Length = 228 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 92/232 (39%), Positives = 136/232 (58%), Gaps = 11/232 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+ R++EIG +EL ++ T + F ++ P R A ++HG+ Sbjct: 1 MREIVLDTETTGISPNDGHRLVEIGCLELFNHVVTGKYFHAYIDPE-RDMPEGAFRIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL+ KP F+ + +F F E + HNA FD+GFINAEL+RI + L SR D Sbjct: 60 SSDFLRGKPKFAEVADDFLAFIGE--DPLVIHNAAFDMGFINAELKRIGRPALPVSRATD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IARRK P ++N L++LC+R+G+ S R+KHGALLDS LL++VY+++M G Q Sbjct: 118 TLDIARRKFPGAQNSLDALCRRFGVDNSGRTKHGALLDSELLAEVYLELMG-GRQPGLVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + + E ++ RD L R+T+ E HD + TLG +W Sbjct: 177 QADYAGMKGE------RVTRAPRDIALPPRLTEAEKAAHDAFVATLGGEPLW 222 >gi|76810101|ref|YP_333003.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 1710b] gi|121601053|ref|YP_992607.1| DNA polymerase III subunit epsilon [Burkholderia mallei SAVP1] gi|124385495|ref|YP_001026592.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10229] gi|126441990|ref|YP_001058508.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 668] gi|126455280|ref|YP_001065768.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 1106a] gi|134282747|ref|ZP_01769450.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305] gi|217423557|ref|ZP_03455058.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576] gi|226196200|ref|ZP_03791785.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei Pakistan 9] gi|237811761|ref|YP_002896212.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei MSHR346] gi|238563612|ref|ZP_00438559.2| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse 4] gi|242318034|ref|ZP_04817050.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1106b] gi|251767848|ref|ZP_02268597.2| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20] gi|254177751|ref|ZP_04884406.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC 10399] gi|254180217|ref|ZP_04886816.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1655] gi|254197669|ref|ZP_04904091.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13] gi|254199436|ref|ZP_04905802.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH] gi|254258454|ref|ZP_04949508.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1710a] gi|254298053|ref|ZP_04965506.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 406e] gi|254358851|ref|ZP_04975124.1| DNA polymerase III, epsilon subunit [Burkholderia mallei 2002721280] gi|76579554|gb|ABA49029.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1710b] gi|121229863|gb|ABM52381.1| DNA polymerase III, epsilon subunit [Burkholderia mallei SAVP1] gi|124293515|gb|ABN02784.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC 10229] gi|126221483|gb|ABN84989.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 668] gi|126228922|gb|ABN92462.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1106a] gi|134245833|gb|EBA45924.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305] gi|147749032|gb|EDK56106.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH] gi|148027978|gb|EDK85999.1| DNA polymerase III, epsilon subunit [Burkholderia mallei 2002721280] gi|157807726|gb|EDO84896.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 406e] gi|160698790|gb|EDP88760.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC 10399] gi|169654410|gb|EDS87103.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13] gi|184210757|gb|EDU07800.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1655] gi|217393415|gb|EEC33436.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576] gi|225931786|gb|EEH27788.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei Pakistan 9] gi|237504517|gb|ACQ96835.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei MSHR346] gi|238520320|gb|EEP83781.1| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse 4] gi|242141273|gb|EES27675.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1106b] gi|243061566|gb|EES43752.1| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20] gi|254217143|gb|EET06527.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1710a] Length = 253 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 78/238 (32%), Positives = 113/238 (47%), Gaps = 9/238 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VELL+ T + ++ P R + P AL +HG+ Sbjct: 14 MRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGKNLHFYVNPE-RDSDPGALAVHGL 72 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I DF + L + + +ID Sbjct: 73 TTEFLSDKPKFAEIVDPLRDFVRDAELIIHNAPFDLGFLDAEFALLGLPSFTDHCAGVID 132 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 133 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 192 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 + S L T EL H+ + L K+ +W + Sbjct: 193 LDEAGDAHRNGDAPRMAFSGLDLP---VLAATDAELAAHEAQLDALDKSAKGVCVWRK 247 >gi|53718980|ref|YP_107966.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei K96243] gi|53725133|ref|YP_102525.1| DNA polymerase III subunit epsilon [Burkholderia mallei ATCC 23344] gi|126449393|ref|YP_001080124.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10247] gi|167719045|ref|ZP_02402281.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei DM98] gi|167738046|ref|ZP_02410820.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 14] gi|167815230|ref|ZP_02446910.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 91] gi|167823638|ref|ZP_02455109.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 9] gi|167845182|ref|ZP_02470690.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei B7210] gi|167893733|ref|ZP_02481135.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 7894] gi|167902185|ref|ZP_02489390.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei NCTC 13177] gi|167910426|ref|ZP_02497517.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 112] gi|167918451|ref|ZP_02505542.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei BCC215] gi|254188362|ref|ZP_04894873.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei Pasteur 52237] gi|52209394|emb|CAH35339.1| DNA polymerase III, epsilon chain [Burkholderia pseudomallei K96243] gi|52428556|gb|AAU49149.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC 23344] gi|126242263|gb|ABO05356.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC 10247] gi|157936041|gb|EDO91711.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei Pasteur 52237] Length = 240 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 78/238 (32%), Positives = 113/238 (47%), Gaps = 9/238 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VELL+ T + ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGKNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I DF + L + + +ID Sbjct: 60 TTEFLSDKPKFAEIVDPLRDFVRDAELIIHNAPFDLGFLDAEFALLGLPSFTDHCAGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 + S L T EL H+ + L K+ +W + Sbjct: 180 LDEAGDAHRNGDAPRMAFSGLDLP---VLAATDAELAAHEAQLDALDKSAKGVCVWRK 234 >gi|254252714|ref|ZP_04946032.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158] gi|124895323|gb|EAY69203.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158] Length = 244 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 113/237 (47%), Gaps = 9/237 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + + +F L + + +ID Sbjct: 60 TTEFLSDKPKFAEVADQIREFVRGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 + +++ L + EEL H + L K+ +W Sbjct: 180 LDDAATVGGAANGQRVSLAALDLP---VLAASDEELAAHHAQLDELDKSVKGTCVWR 233 >gi|319406407|emb|CBI80047.1| DNA polymerase III epsilon chain [Bartonella sp. 1-1C] Length = 235 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 101/235 (42%), Positives = 144/235 (61%), Gaps = 4/235 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGL+ ++DRIIEIG +E+++ T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLNKESDRIIEIGCIEMVNRYLTGRRFHVYLNPQGVVIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LKD+ F I DF + AHNA FD+GF+NAEL+R+NK ++ +IDT Sbjct: 61 NERLKDEKKFDDIVDALLDFIDGATIV--AHNANFDIGFLNAELERVNKPLINSDNVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LSIARR+ P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+++ G Q F F Sbjct: 119 LSIARRRFPMGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIELIG-GKQGIFSFD 177 Query: 187 TNEDRFFKEEKKTVPNISLLK-RDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 E + +K R + L R++K+E D H I+ +G A+W+ + Sbjct: 178 NYESCDVMNVQDNKNAFPTIKIRSQALPQRLSKQEKDMHIDLIKKIGDKALWNHF 232 >gi|288940138|ref|YP_003442378.1| DNA polymerase III subunit epsilon [Allochromatium vinosum DSM 180] gi|288895510|gb|ADC61346.1| DNA polymerase III, epsilon subunit [Allochromatium vinosum DSM 180] Length = 240 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 114/237 (48%), Gaps = 8/237 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + RIIEIG VEL+D T R F +L P R+ EA +HGI Sbjct: 1 MRQIVLDTETTGLEPREGHRIIEIGCVELVDRRPTGRNFHEYLNPE-RQIDAEAEAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRI 123 ++ FL DKP F+ ++ A + F D + Sbjct: 60 SNAFLADKPRFAERAERLVEYLRGAELIIHNAAFDVGFLDHEFGLWRGAEAPRIADLCTV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L +AR+ HP RN L++LCKRY I SHR+ HGALLD+ +L+DVY+ M G + Sbjct: 120 TDSLLMARKLHPGQRNGLDALCKRYAIDNSHRTLHGALLDAEILADVYLAMTGGQVSLYL 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIW 237 G + E + +R + R T+ EL+ H + + K +W Sbjct: 180 GGEGMNGSGVGEGPVHRGRLDP-ERPRLRVVRATQTELEAHRVRLDAIWKASGGCVW 235 >gi|332535809|ref|ZP_08411542.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332034787|gb|EGI71325.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 237 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 87/238 (36%), Positives = 132/238 (55%), Gaps = 13/238 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG+D K RIIEIG VEL++ T F V++ P R + EA+ +HGIT Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQ-RPSEEEAIDVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRI 123 +EFL+DKP F I EF+D+ + HNA FDVG ++ E +N+ ++ Sbjct: 63 NEFLRDKPLFHQIAQEFFDYIEGAE--LVIHNAPFDVGHMDNEFALLNQGYPKTETFCQV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR HP +N+L++LC+RY + + R+ HGALLDS +L+DVY+ M Q Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDVDNAKRTLHGALLDSEILADVYLAMTG--GQTKL 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238 N+D +++K + ++ R + R + E H+ + + K IW Sbjct: 179 NLNQNKDDGSEQQKGGIKRLN-SDRAPLVVLRASDTEQSAHEARLDLVNKEGGQCIWR 235 >gi|293603370|ref|ZP_06685798.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter piechaudii ATCC 43553] gi|292818280|gb|EFF77333.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter piechaudii ATCC 43553] Length = 239 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 89/240 (37%), Positives = 128/240 (53%), Gaps = 15/240 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTGLD + RI+EIG VE+++ T ++L P+ R + PEAL +HG+ Sbjct: 1 MRQIIFDTETTGLDPAQGHRIVEIGCVEMVNRMSTGNNLHIYLNPD-RDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + EF F IAHNA FDV F NAEL + + P+ Sbjct: 60 TTEFLSDKPRFADVVDEFVKFIQGAE--LIAHNAAFDVKFFNAELAKTGRGPITEYCETV 117 Query: 126 TLS--IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 T S AR P RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M G + Sbjct: 118 TDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 N+ + S + + +EL EH+ + L K+ +W + Sbjct: 178 DVDDNDGAGSDGIVLAKFDAS-----GLVVIKAADDELAEHEAYLAALDKSVGGECVWRK 232 >gi|134295347|ref|YP_001119082.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4] gi|134138504|gb|ABO54247.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] Length = 244 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 112/237 (47%), Gaps = 9/237 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + DR+IEIG VELL+ T +++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNPRSGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + + DF + +ID Sbjct: 60 TTEFLSDKPKFAEVADQIRDFVKGAELIIHNAPFDLGFLDAEFARLGLPPFIEHCDGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLAEAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 + +++ L + +EL H + L K+ +W Sbjct: 180 LDDAGADGGTANGQRISLASLDLP---VVAASDDELAAHQAQLDELDKSVKGTCVWR 233 >gi|119471754|ref|ZP_01614114.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Alteromonadales bacterium TW-7] gi|119445377|gb|EAW26665.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Alteromonadales bacterium TW-7] Length = 237 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 86/238 (36%), Positives = 130/238 (54%), Gaps = 13/238 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG+D K RIIEIG VEL++ T F V++ P R EA+ +HGIT Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQ-RSIEEEAIDVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID- 125 +EFL+DKP + I EF+D+ + HNA FDVG ++ E +N+ + Sbjct: 63 NEFLRDKPLYRDIAQEFFDYIKGAE--LVIHNAPFDVGHMDNEFALLNQGFPNTHDYCQV 120 Query: 126 --TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 TL +AR HP +N+L++LC+RY I + R+ HGALLDS +L+DVY+ M Q Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDIDNAKRTLHGALLDSEILADVYLAMTG--GQTKL 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238 N+D ++++ + ++ +R + R T EE H+ + + K +W Sbjct: 179 NLNQNKDDGSEQQQGGIRRLN-SERAPLVVLRATDEEQSAHEARLDLVNKEGGQCLWR 235 >gi|70730658|ref|YP_260399.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf-5] gi|68344957|gb|AAY92563.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens Pf-5] Length = 249 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 125/247 (50%), Gaps = 10/247 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 +EFL KP F+ + EF+DF A + F Q D I+ Sbjct: 63 NEFLVGKPRFAEVADEFFDFIQGAQLIIHNAAFDVGFINNEFALMGQHERADITQHCTIL 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182 Query: 185 FKTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 ++ E I L R + + + EL EH ++ + K+ A+W Sbjct: 183 GNASDGNGSGEGAGQASEIRRLPADRPRGRIIQASDAELAEHQVRLEIIAKSAGAPALWT 242 Query: 239 RYISSNQ 245 + + + Q Sbjct: 243 QLLETQQ 249 >gi|241761459|ref|ZP_04759547.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374366|gb|EER63863.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 234 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 129/238 (54%), Gaps = 10/238 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGL DR++EIG VEL++ +T +F + P R A +HG+ Sbjct: 1 MREIVFDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNPE-RPMDAVAESIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D FL DKP F+ E F + +AHNA FD GF+N EL + + +R++D Sbjct: 60 SDAFLADKPLFADKAQELLSFIKL--SPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR KHP +++ L++LC RYGI SHR KHGALLD+ LL+ +Y+++ G QI Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVELTG-GRQIGMAL 176 Query: 186 KTNEDRFFKE----EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 N + + + + +P + +EL H I + N +W R Sbjct: 177 DDNNGQSDGRLSVPNTVSGLPRNKKVKRQPRPHEASPQELLRHGAFIDKIS-NPVWRR 233 >gi|167562346|ref|ZP_02355262.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis EO147] gi|167574356|ref|ZP_02367230.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis C6786] Length = 240 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 116/243 (47%), Gaps = 9/243 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P GR + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRVIEIGCVELLNRRLTGNNLHFYVNP-GRDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I E DF + L + + +ID Sbjct: 60 TTEFLSDKPKFAEIVDELRDFVRDAELIIHNAPFDLGFLDAEFSLLGLPTFTDHCAGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYI 241 + S L T +EL H+ + L K+ +W + Sbjct: 180 LDEGGDAHRNGDAPRMAFSGLDLP---VLAATDDELAAHEAQLDALDKSVKGACVWRKEA 236 Query: 242 SSN 244 S Sbjct: 237 GSE 239 >gi|319403493|emb|CBI77072.1| DNA polymerase III epsilon chain [Bartonella rochalimae ATCC BAA-1498] Length = 235 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 99/235 (42%), Positives = 144/235 (61%), Gaps = 4/235 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGL+ ++DRIIEIG +E+++ T R F V+L P E + +HG+T Sbjct: 1 MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNPQDVIIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LKD+ F I DF ++ AHNA FD+GF+NAEL+R+NK ++ +IDT Sbjct: 61 NERLKDEKKFDDIVDALLDFIDDATIV--AHNANFDIGFLNAELERVNKPLINSDNVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LSIARR+ P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+++ G Q F F Sbjct: 119 LSIARRRFPMGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIELIG-GKQGIFSFD 177 Query: 187 TNED-RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 E + ++ R + L R++K+E D H I+ +G A+W+ + Sbjct: 178 NYESCDVMNVQDNKNAFYTIKTRSQALPQRLSKQEKDMHADLIKKIGDKALWNHF 232 >gi|56550935|ref|YP_161774.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp. mobilis ZM4] gi|56542509|gb|AAV88663.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 234 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 91/238 (38%), Positives = 130/238 (54%), Gaps = 10/238 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGL DR++EIG VEL++ +T +F + P R A +HG+ Sbjct: 1 MREIVFDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNPE-RPMDAVAESIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D FL DKP F+ E F + +AHNA FD GF+N EL + + +R++D Sbjct: 60 SDAFLADKPLFADKAQELLSFIKL--SPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR KHP +++ L++LC RYGI SHR KHGALLD+ LL+ +Y+++ G QI Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVELTG-GRQIGMAL 176 Query: 186 KTNEDRFFK--EEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 N TV + K + +P + +EL H I + N +W R Sbjct: 177 DDNNGPSDGRLSAPNTVSGLPRNKKVKRQPRPHEASPQELLRHGAFIDKIS-NPVWRR 233 >gi|296536098|ref|ZP_06898231.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC 49957] gi|296263574|gb|EFH10066.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC 49957] Length = 241 Score = 148 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 81/237 (34%), Positives = 127/237 (53%), Gaps = 9/237 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG D DR++E+ AVE+++ T R F + + P R EA K+HG T Sbjct: 3 RALVLDTETTGFDPLTGDRVLEVAAVEIVNLVPTGRHFHMLIDPE-RDVPEEATKVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E L KP F+ I DF + IAHNA FD GF++ EL++ LD +R++DT Sbjct: 62 REMLIGKPKFAEIAPAMLDFLGD--DPIIAHNAPFDFGFLDWELKKAGHKALDRARMVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LC+RYGI S R+ H ALLD LL+ VY+++M G Q Sbjct: 120 LALAKKRFPGLPNSLDALCRRYGIDNSMRTAHNALLDVQLLAQVYLELMG-GKQPGLELA 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 + R + + +P + ++ EL H + + K+ +W ++ + Sbjct: 179 S---RPAVSTPVVLQIDATPVARQPRPIQPSEAELAAHAAFLAKI-KDPLWAAFLPA 231 >gi|167836205|ref|ZP_02463088.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis MSMB43] Length = 241 Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 118/244 (48%), Gaps = 9/244 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIE+G VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGSNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I + DF + L + + +ID Sbjct: 60 TTEFLSDKPKFAEIVDQLRDFVRDAELIIHNAPFDLGFLDAEFALLGLPSFTDHCAGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRYI 241 + + S L T EEL H+ + L K + +W + Sbjct: 180 LDEAGDAHRNSNEPRMAFSGLDLP---VLAATGEELAAHEAQLDALDKSVKGSCVWRKEA 236 Query: 242 SSNQ 245 ++ + Sbjct: 237 AAGE 240 >gi|298293766|ref|YP_003695705.1| DNA polymerase III subunit epsilon [Starkeya novella DSM 506] gi|296930277|gb|ADH91086.1| DNA polymerase III, epsilon subunit [Starkeya novella DSM 506] Length = 232 Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 101/237 (42%), Positives = 143/237 (60%), Gaps = 8/237 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ DR++EIG VE+ + T +TF V+L P R EA +HG+ Sbjct: 1 MREIVLDTETTGLNPLTGDRLVEIGCVEIFNRIPTGQTFHVYLNPE-RDMPLEAFNVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+++ +F F + HNA FD+GFINAEL R+ + L R++D Sbjct: 60 SAEFLSDKPLFAAVVDDFLAFIAG--DPLVIHNAAFDIGFINAELARLARPALTFDRVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TLS+ARR+HP + N L+ L RYGI S R+KHGALLDS LL+DVY ++ G Q G Sbjct: 118 TLSLARRRHPGASNRLDDLMNRYGIDGSRRTKHGALLDSELLADVYAELCG-GRQTALGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 E E+++ + L+R +PL R+ ++ H+ + TLG +AIW Y + Sbjct: 177 TVVETTVVLAERQSA---APLQRPRPLAPRLDAAQVATHEAFVATLGDSAIWKDYAA 230 >gi|260753374|ref|YP_003226267.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552737|gb|ACV75683.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 234 Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 129/238 (54%), Gaps = 10/238 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGL DR++EIG VEL++ +T +F + P R A +HG+ Sbjct: 1 MREIVFDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNPQ-RPMDAVAESIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D FL DKP F+ E F + +AHNA FD GF+N EL + + +R++D Sbjct: 60 SDAFLADKPLFADKAQELLSFIKL--SPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR KHP +++ L++LC RYGI SHR KHGALLD+ LL+ +Y+++ G QI Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVELTG-GRQIGMAL 176 Query: 186 KTNEDRFFKE----EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 N + + + + +P + +EL H I + N +W R Sbjct: 177 DDNNGQSDGRLSVPNTVSGLPRNKKVKRQPRPHEASPQELLRHGAFIDKIS-NPVWRR 233 >gi|221201955|ref|ZP_03574991.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] gi|221204915|ref|ZP_03577932.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] gi|221213892|ref|ZP_03586865.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] gi|221166069|gb|EED98542.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] gi|221175772|gb|EEE08202.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] gi|221178038|gb|EEE10449.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] Length = 244 Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 79/238 (33%), Positives = 116/238 (48%), Gaps = 9/238 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRIIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I + DF L + + +ID Sbjct: 60 TTEFLSDKPKFAEIAHQILDFVKGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 ++ +++ L T EEL EH + L K+ +W + Sbjct: 180 LDDDAGGAGAANGQRVSLAALDLP---VLAATAEELAEHQAQLDDLDKSVKGACVWRQ 234 >gi|161525206|ref|YP_001580218.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC 17616] gi|189350055|ref|YP_001945683.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC 17616] gi|160342635|gb|ABX15721.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC 17616] gi|189334077|dbj|BAG43147.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC 17616] Length = 244 Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 79/238 (33%), Positives = 116/238 (48%), Gaps = 9/238 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARSGDRIIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I + DF L + + +ID Sbjct: 60 TTEFLSDKPKFAEIAHQILDFVKGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 ++ +++ L T EEL EH + L K+ +W + Sbjct: 180 LDDDAGGAGAANGQRVSLAALDLP---VLAATAEELAEHQAQLDDLDKSVKGACVWRQ 234 >gi|114798147|ref|YP_758739.1| DNA polymerase III subunit epsilon [Hyphomonas neptunium ATCC 15444] gi|114738321|gb|ABI76446.1| DNA polymerase III, epsilon subunit [Hyphomonas neptunium ATCC 15444] Length = 232 Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 135/232 (58%), Gaps = 9/232 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I FD ETTGL+ + DRIIEIGAVE++++ T +TF+ + P G S +++ GIT Sbjct: 6 REIAFDTETTGLNPNEGDRIIEIGAVEMINHIPTGKTFRRLINP-GMAVSEATIRITGIT 64 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ L+DKP F +A +AHNA FD GF+N ELQR +D + R +DT Sbjct: 65 DDHLRDKPPFEHPDIIDAFLEFTGDAIIVAHNASFDRGFLNMELQRCGRDIIPEDRWVDT 124 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + +AR+++P + L++LCKR+ I++ R+ HGALLDS LL+ VY++++ G F F+ Sbjct: 125 VQMARKRYPGAPASLDALCKRFDISLESRTFHGALLDSQLLASVYLELLG-GRARAFSFE 183 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + + +R PL + +T E H + ++ LG +A+W Sbjct: 184 PTLGG------EGYQRPAARQRPAPLASLVTDAERAAHAELVEKLGADALWK 229 >gi|94496604|ref|ZP_01303180.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58] gi|94423964|gb|EAT08989.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58] Length = 230 Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 129/232 (55%), Gaps = 7/232 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTG D DR++EIG +EL++ T RTF + P R A +HG+ Sbjct: 1 MREIIFDTETTGFDPASGDRMVEIGCIELVNRVPTGRTFHAYYHPE-RDMPAAAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL P FS E DF + + +AHNA+FD GF+N EL + R+ID Sbjct: 60 SADFLAKHPVFSLGALELLDFLED--SPLVAHNARFDFGFLNHELTLCGHPQVGMHRMID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T++IAR+ HP +++ L++LC RYGI SHR KHGALLD+ LL+ +YI++ G QI G Sbjct: 118 TVAIARQLHPGAKHSLDALCTRYGIDRSHRVKHGALLDAELLAQLYIELTG-GRQIGLGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 E + + T + R + +EL+ H + TL + +W Sbjct: 177 AQEEAKEIVRVELTESPVVRPVRPA-RVFMASAQELERHAAFVATLDR-PLW 226 >gi|114571517|ref|YP_758197.1| DNA polymerase III subunit epsilon [Maricaulis maris MCS10] gi|114341979|gb|ABI67259.1| DNA polymerase III, epsilon subunit [Maricaulis maris MCS10] Length = 230 Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 91/234 (38%), Positives = 127/234 (54%), Gaps = 9/234 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD DR+ E+G VE++D+ T +TF ++ P R E +++ G+ Sbjct: 1 MREIVFDTETTGLDPNTGDRVTELGCVEIIDFIPTGKTFHAYVNPQ-RSVPKEVVEITGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F + +F +F + AHNA FD GFIN EL R+ D R D Sbjct: 60 TTEFLADKPLFDEVGPQFVEFVGDATMV--AHNAPFDRGFINMELARLGLDIYPDDRFKD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T IAR K P S L++LCKR+ I++ R KHGAL+DS LL++VY+++M G Sbjct: 118 TARIARAKFPGSYVSLDALCKRFDISLDTRDKHGALIDSLLLAEVYLELMG-GRTRALDL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 V + R +PL R T E H + +G+NA+W + Sbjct: 177 S----GQGSGGGGKVVFPARSPRAEPLTGRQTDSERAAHAAFVDEMGENALWKK 226 >gi|53805082|ref|YP_113230.1| DNA polymerase III subunit epsilon [Methylococcus capsulatus str. Bath] gi|53758843|gb|AAU93134.1| DNA polymerase III, epsilon subunit [Methylococcus capsulatus str. Bath] Length = 267 Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 94/270 (34%), Positives = 128/270 (47%), Gaps = 40/270 (14%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD K RIIEIG VELLD T F V++ P R+ A+++HG+ Sbjct: 1 MRQIVLDTETTGLDPKAGHRIIEIGCVELLDRRITQNRFHVYINPE-REIDAGAIEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 T+EFL P F +I +F +F + I HNA FDVGF++ EL D Sbjct: 60 TNEFLAGMPVFRNIADDFLNFISGAE--LIIHNAAFDVGFLDHELSLLGENRGRIADYCG 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I DTL++AR+ HP RN L++LCKRY + S R HGALLD+ +L+DVY+ M G + Sbjct: 118 ICDTLAMARKNHPGQRNSLDALCKRYNVDNSRRELHGALLDAEILADVYLAMTGGQITML 177 Query: 183 FGFKTNEDRFFK-----------------------------EEKKTVPNISLLKRDKPLF 213 E ++ P R + Sbjct: 178 LEADAESGGARGSDGGFERFVVNPSAGSVHAQPGPLGANSVEREQAAPRSVDTARPRLRV 237 Query: 214 TRITKEELDEHDKTIQTLGK----NAIWDR 239 R T EE + H ++ + K N +W R Sbjct: 238 IRSTPEEAEAHAARLEAIAKASSGNCLWSR 267 >gi|186475632|ref|YP_001857102.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815] gi|184192091|gb|ACC70056.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815] Length = 249 Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 79/237 (33%), Positives = 115/237 (48%), Gaps = 10/237 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRIIEIGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I DF + L + +ID Sbjct: 60 TTEFLSDKPKFAEIADTLRDFIQDAELIIHNAPFDIGFLDAEFALLGLPPFSQYCGEVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A+ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVRAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 K V +L + + T +EL EH+ + L K+ ++W Sbjct: 180 LGETAADDAGGAKRV----MLDTLELIVLAATDDELAEHEALLDGLDKSLKGTSVWR 232 >gi|87119404|ref|ZP_01075302.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Marinomonas sp. MED121] gi|86165795|gb|EAQ67062.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Marinomonas sp. MED121] Length = 235 Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 86/237 (36%), Positives = 121/237 (51%), Gaps = 8/237 (3%) Query: 6 KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 MR+I+ D ETTG+D K RIIEIG VE+LD T F V++ P+ R+ EA ++HG Sbjct: 1 MMRQIILDTETTGIDPKQGHRIIEIGCVEMLDRKLTKNHFHVYINPD-RQVEEEAFQVHG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+DEFL DKP F + +F ++ D + Sbjct: 60 ISDEFLADKPRFHQVAQDFLNYIQGAELVIHNAPFDVGFIDHEFAKLGNFPKVADICSVF 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL+ AR KHP +N+L++LCKRYGI SHR HGALLDS +L+DVY+ M Q + G Sbjct: 120 DTLAFARSKHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLLMTG--GQTSLG 177 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWD 238 +ED T+ +S R + + ELD H++ + + K A +W Sbjct: 178 LGDDEDGADGMSVPTIRRLSP-DRPMIKVLKANQAELDLHNERLDLIEKQAGKVLWR 233 >gi|152986464|ref|YP_001348839.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PA7] gi|150961622|gb|ABR83647.1| DNA polymerase III, epsilon subunit [Pseudomonas aeruginosa PA7] Length = 246 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 82/240 (34%), Positives = 121/240 (50%), Gaps = 8/240 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ RIIEIG VEL T R F V+L P+ R+ A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRI 123 T+E+LKDKP F + ++F++F A + F Q+ D + + Sbjct: 60 TNEYLKDKPRFREVANDFFEFIRGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYCTV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR +HP RN+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G + ++ Sbjct: 120 LDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSLSL 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDR 239 E + R R + EEL H + + K+A +W + Sbjct: 180 AGSGAEGDGSGRPMVSPIRRLDPARVATPVLRASAEELAAHAARLAVIEKSAGGPSLWAQ 239 >gi|209695823|ref|YP_002263753.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238] gi|208009776|emb|CAQ80082.1| DNA polymerase III, epsilon chain [Aliivibrio salmonicida LFI1238] Length = 243 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 94/240 (39%), Positives = 134/240 (55%), Gaps = 16/240 (6%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IV D ETTG++ + RIIEIGAVE+++ T F V++ P+ R EA+ Sbjct: 10 RIIVLDTETTGMNLSGGPIYEGHRIIEIGAVEIINRKLTGNHFHVYIKPD-RLIDLEAID 68 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118 +HGITDEFL KP + I EF F +AHNA FDVGF++ E ++NK Sbjct: 69 VHGITDEFLYGKPEYKDIHDEFLAFIKGAE--LVAHNAPFDVGFMDYEFSKLNKLIGTTD 126 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +I DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 127 QYCKITDTLAMAKKISPGKRNNLDVLCGRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 186 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + ++F NE +E + L R R T +EL+ H+K + +G +W Sbjct: 187 TSLSFSAGGNESDSSEESINRLN----LGRKGLKVLRATADELEAHEKRLDIVGDACLWR 242 >gi|119476004|ref|ZP_01616356.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2143] gi|119450631|gb|EAW31865.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2143] Length = 236 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 117/232 (50%), Gaps = 6/232 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTGL+ + RIIEIG VEL+D T R + ++ P R+ A+++HGI Sbjct: 1 MRQVVLDTETTGLEPSQGHRIIEIGCVELVDRKLTGRHYHQYINPK-REIDTGAMEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA--HNAKFDVGFINAELQRINKDPLDPSRI 123 T+EFL DKP FS + EF DF + F + + Sbjct: 60 TNEFLADKPLFSQVAQEFLDFVTGAELIIHNAPFDIGFINSEFKLLDSKSPGTMESYCGV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR+KHP RN L++LC RY + S R HGALLDS +L+DVY+ M G +++ Sbjct: 120 VDTLVMARQKHPGQRNSLDALCSRYEVDNSQRDLHGALLDSEILADVYLLMTGGQTKLLL 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 NE+ + R EEL EH++ +Q + K + Sbjct: 180 AGDDNEEGSGHSDNN--IRRLSTNRQPLKIILANDEELAEHEERMQKIDKAS 229 >gi|15887364|ref|NP_353045.1| DNA polymerase III subunit epsilon [Agrobacterium tumefaciens str. C58] gi|15154863|gb|AAK85830.1| DNA polymerase III, epsilon chain [Agrobacterium tumefaciens str. C58] Length = 232 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 110/234 (47%), Positives = 157/234 (67%), Gaps = 4/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGL+SK DR+IEIG +EL+++ T RT +++ P RK P+AL +HGIT Sbjct: 1 MREIIFDTETTGLESKLDRVIEIGGIELINHFPTGRTLHLYISPEDRKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDKP F+ + + +FF+ AHNA FD+GFINAE R+ +P+ + DT Sbjct: 61 DEFLKDKPKFAEVIDQIREFFDGARWV--AHNATFDMGFINAEFARLGIEPVSAELVTDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRK+P N L++LC+RYGI SHR+KHGALLDS LL++VYI+M+ G Q GF Sbjct: 119 LSLARRKNPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIG-GRQTALGFG 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + + ++ VP ++ L+R L +R+ + + H K + +G AIW+RY Sbjct: 178 SAARQETIIIEEDVP-LAPLQRPSALPSRLDADTIAAHGKLVLGMGDKAIWNRY 230 >gi|209966072|ref|YP_002298987.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW] gi|209959538|gb|ACJ00175.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW] Length = 227 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 133/232 (57%), Gaps = 11/232 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D+ DR++EIG VEL+++ T RT+ ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGIDALNGDRVVEIGCVELMNHVATGRTYHQYINPE-RDMPIEAFNVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL +P+F+ I F DF + + + HNA FDVGF+NAEL R+ L +R ID Sbjct: 60 STEFLSGQPTFAEIVGPFLDFIQD--SPLVIHNATFDVGFLNAELTRLGMRTLPAARAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +ARR+ P + L++LC+R+ I S RS HGALLD+ LL++VY++++ G Q + Sbjct: 118 TVVLARRRFPGAPASLDALCRRFEIDNSARSYHGALLDAQLLAEVYLELLG-GRQPDLVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + + P R +P EEL+ H+ ++ +W Sbjct: 177 APTGAQAAASFRTDRP------RREPRPHAPLPEELEAHEAFLKGFKTPPLW 222 >gi|107022359|ref|YP_620686.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia AU 1054] gi|116689306|ref|YP_834929.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia HI2424] gi|105892548|gb|ABF75713.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116647395|gb|ABK08036.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] Length = 244 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 9/243 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + + DF + + +ID Sbjct: 60 TTEFLSDKPKFAEVAHQILDFVKDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYI 241 + +++ L +++EL H + L K+ +W + Sbjct: 180 LDDAGADGGAANGKRVSLAALD---LAVVTASEDELAAHQAQLDELDKSVKGTCVWRQPA 236 Query: 242 SSN 244 ++ Sbjct: 237 DTD 239 >gi|167582322|ref|ZP_02375196.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis TXDOH] gi|167620419|ref|ZP_02389050.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis Bt4] Length = 241 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 120/243 (49%), Gaps = 9/243 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIE+G VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL+DKP F+ I + DF + L + + +ID Sbjct: 60 TTEFLRDKPKFADIVDQLRDFVRDAELIIHNAPFDLGFLDAEFALLGLPAFSDHCAGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYI 241 ++ + S L T EEL +H+ + L K+ +W + Sbjct: 180 LDEAGDAHRKGDEPRMAFSGLDLP---VLAATDEELADHEAQLDALDKSVKGACVWRKEA 236 Query: 242 SSN 244 + + Sbjct: 237 AVD 239 >gi|119775015|ref|YP_927755.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] gi|119767515|gb|ABM00086.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] Length = 242 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 86/248 (34%), Positives = 128/248 (51%), Gaps = 20/248 (8%) Query: 2 IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+I+ D ETTG++ RIIEIG VE+++ T RTF ++ P G+ Sbjct: 3 IISNAERQIILDTETTGMNQGAGAVYLGHRIIEIGCVEVVNRRLTGRTFHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+ +HGIT++ + +P F I F DF +AHNA FD+ FIN E + Sbjct: 62 DEEAIAVHGITNDRVAGEPRFHEIVGGFLDFIRGAE--LVAHNASFDMSFINHEFSMLVP 119 Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 D ++D+L+IA+ HP +N+L++LCKRYGI + R+ HGALLD+ +L+DVY+ Sbjct: 120 QGPKVEDICTVLDSLAIAKFLHPGQKNNLDALCKRYGIDNTRRTYHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M Q F +E + + R R T +EL H+K + +G Sbjct: 180 VMTG--GQTKFNLHADEGSQEQGGIIRLD----SNRPSLKVVRATADELGNHEKRLDLVG 233 Query: 233 K--NAIWD 238 K +W Sbjct: 234 KSGKCLWR 241 >gi|149185255|ref|ZP_01863572.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21] gi|148831366|gb|EDL49800.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21] Length = 229 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 92/233 (39%), Positives = 129/233 (55%), Gaps = 7/233 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD + DR++EIG VE++ T TF + P R A +HG+ Sbjct: 1 MREIVFDTETTGLDPRTGDRMVEIGCVEMVSLVPTGNTFHAYYNPE-RDMPAGAEAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + FL DKP F E DF + IAHNA FD GF+NAEL ++ + SR+ID Sbjct: 60 SAAFLSDKPLFRDTAHELLDFIGDA--PLIAHNAGFDFGFLNAELALCEREAVCMSRMID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+++A+++HP ++ L++LC RYGI SHR KHGALLD+ LL+ VY++ + GG QI Sbjct: 118 TVALAKKRHPGAKLSLDALCTRYGIDRSHRVKHGALLDAELLAQVYVE-LKGGRQIGLEL 176 Query: 186 KTNEDR-FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 E V R + T EEL H + + + +N +W Sbjct: 177 AAETAAVEITTEVVAVRKAPDGPRREARPHAPTPEELARHREFMAGI-ENPLW 228 >gi|296284843|ref|ZP_06862841.1| DNA polymerase III epsilon subunit [Citromicrobium bathyomarinum JL354] Length = 240 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 88/237 (37%), Positives = 131/237 (55%), Gaps = 8/237 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTG+D + R++EIG VEL+D T TF + P R EA +HG+ Sbjct: 8 MREIIFDTETTGIDPRQGHRMVEIGCVELVDRMPTGETFHAYYNPE-RDMPAEAEAIHGL 66 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL DKP F+ EF DF + +AHNA FD F+NAEL+ ++P+ +R ID Sbjct: 67 SAQFLADKPRFADAVDEFLDFVRDDM--LVAHNAGFDFAFLNAELELCTREPICLTRKID 124 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFG 184 TL +ARRK+P ++ L++LC RYG+ SHR HGALLD+ LL+ VYI++ + Sbjct: 125 TLEMARRKNPGGKHSLDALCSRYGVDRSHRVFHGALLDAELLAQVYIELTGGRQIAMGLI 184 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + E E + + R + +++EL H + + + IW R Sbjct: 185 GELAEGDTAPAEPELAAMLPSGDRPRRPARPHSASEQELAAHAAFLDRMTR-PIWHR 240 >gi|254419681|ref|ZP_05033405.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3] gi|196185858|gb|EDX80834.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3] Length = 241 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 128/235 (54%), Gaps = 7/235 (2%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG D K DR+IE+G +E+ D T RTF F+ P R P+A+++HGIT Sbjct: 3 REIVLDTETTGFDPKTGDRLIEVGCIEIQDLLPTGRTFHRFVNPE-RLIPPDAIRVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ +KD P F I + +F + AHNA FD FI+ E + + +R IDT Sbjct: 62 DDKVKDAPKFHEIADDLIEFIGDAPMI--AHNAGFDRNFIDFEYKLCGRPITGETRWIDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +A+ + P N L++LCKR+ +++ R+ HGAL+D+ LL++VY++ + GG + Sbjct: 120 LKLAQARFPGMPNSLDALCKRFKVSLVERTLHGALIDARLLAEVYLE-LRGGKERVLDLS 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-LGKNAIWDRY 240 + VP + R +PL R + EE H + L A+W+ Y Sbjct: 179 SAPVAGRSAG-VAVPTAAYGPRPQPLALRSSPEEQAAHIAFLAKALKDRALWEAY 232 >gi|317402511|gb|EFV83078.1| DNA polymerase subunit III [Achromobacter xylosoxidans C54] Length = 240 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 89/240 (37%), Positives = 128/240 (53%), Gaps = 15/240 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTGLD + RI+EIG VEL++ T ++L P+ R + PEAL +HG+ Sbjct: 1 MRQIIFDTETTGLDPAQGHRIVEIGCVELVNRMATGNNLHIYLNPD-RDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + EF F IAHNA FDV F NAEL + + P+ Sbjct: 60 TTEFLSDKPRFAEVADEFVKFIQGAE--LIAHNAAFDVKFFNAELAKTGRGPITEYCATV 117 Query: 126 TLS--IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 T S AR P RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M G + Sbjct: 118 TDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 N+ ++ + ++ EL EH+ + L K+ +W + Sbjct: 178 DVDDNDTGAGGGVV-----LARFDASGLPVVKASEAELAEHETYLAALDKSVGGECVWRK 232 >gi|134095496|ref|YP_001100571.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans] gi|133739399|emb|CAL62449.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans] Length = 234 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 94/239 (39%), Positives = 133/239 (55%), Gaps = 16/239 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + DRIIEIG VEL+D T F ++ P R + AL +HG+ Sbjct: 1 MRQIVLDTETTGLNPRSGDRIIEIGCVELIDRRLTGNNFHHYINPE-RDSEEGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--I 123 T EFL DKP F+ I EF D+ + HNA FDVGF++AEL+R+ I Sbjct: 60 TTEFLSDKPKFAEIVDEFRDYISGAEVV--IHNAPFDVGFLDAELKRVEMPLFKDHVGGI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL A+ HP RN L++LC RYG++ +HR+ HGALLD+ LL++VY+ M G + ++ Sbjct: 118 LDTLQQAKELHPGKRNSLDALCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLSM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 + + V +L + T EEL EH+ +Q+L K +W Sbjct: 178 DLGGQDADSDGIALEVVAIADILLQP------ATAEELAEHELLMQSLDKEVKGQCLWR 230 >gi|83720697|ref|YP_443303.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis E264] gi|257139540|ref|ZP_05587802.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis E264] gi|83654522|gb|ABC38585.1| DNA polymerase III, epsilon subunit [Burkholderia thailandensis E264] Length = 241 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 120/243 (49%), Gaps = 9/243 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIE+G VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL+DKP F+ I + DF + L + + +ID Sbjct: 60 TTEFLRDKPKFADIVDQLRDFVRDAELIIHNAPFDLGFLDAEFALLGLPAFSDHCAGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYI 241 ++ + S L T EEL +H+ + L K+ +W + Sbjct: 180 LDEAGDAHRKGDEPQMAFSGLDLP---VLAATDEELADHEAQLDALDKSVKGACVWRKEA 236 Query: 242 SSN 244 + + Sbjct: 237 AVD 239 >gi|114321140|ref|YP_742823.1| DNA polymerase III, epsilon subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114227534|gb|ABI57333.1| DNA polymerase III, epsilon subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 243 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 89/241 (36%), Positives = 132/241 (54%), Gaps = 13/241 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S+ DR+IEIG VEL+D T F +L P+ R+ EA+++HGI Sbjct: 1 MRQIVLDTETTGLEWSQGDRVIEIGCVELVDRRPTGNNFHQYLNPD-REVPQEAVEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 T++FL DKP F + F ++ + HNA FDVGF++ EL R D + Sbjct: 60 TNDFLADKPRFHEVAERFVEYIRGSE--LVIHNAAFDVGFLDYELSRLGRGWGRVEDFAS 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR++HP RN L++LCKRY + + R HGALLD+ +L+DVY+ M G + Sbjct: 118 VLDTLLLARQRHPGQRNSLDALCKRYDVDNTQRELHGALLDARILADVYLAMTGGQKAL- 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 F E + + E + + R + R + E H+ + + K W Sbjct: 177 FTLDEEEAQAHEGEGGGIRRLP-SDRPRLAVVRAGEAERRAHEALLDRIDKASGGGCRWR 235 Query: 239 R 239 R Sbjct: 236 R 236 >gi|78065897|ref|YP_368666.1| DNA polymerase III subunit epsilon [Burkholderia sp. 383] gi|77966642|gb|ABB08022.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383] Length = 244 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 113/237 (47%), Gaps = 9/237 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + ++ DF + + +ID Sbjct: 60 TTEFLSDKPKFAEVANQIRDFVQDAELIIHNAPFDLGFLDAEFARLDLPPFTKHCGGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 + +++ L + +EL H + L K+ +W Sbjct: 180 LDDAGADGGAGNGQRVSLAALDLP---VVAASDDELAAHQAQLDELDKSVKGTCVWR 233 >gi|59712542|ref|YP_205318.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114] gi|59480643|gb|AAW86430.1| DNA polymerase III epsilon subunit [Vibrio fischeri ES114] Length = 243 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 93/240 (38%), Positives = 136/240 (56%), Gaps = 16/240 (6%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IV D ETTG++ + RI+EIGAVE+++ T F V++ P+ R EA+ Sbjct: 10 RIIVLDTETTGMNFSGGPVYEGHRIVEIGAVEIINRKLTGNHFHVYIKPD-RLIDLEAID 68 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118 +HGITDEFL DKP + I EF +F +AHNA FDVGF++ E ++NK Sbjct: 69 VHGITDEFLYDKPEYKDIHDEFLEFIKGAE--LVAHNAPFDVGFMDYEFSKLNKLIGTTD 126 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +I DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 127 QYCKITDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 186 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + ++F N +E K + R R T +EL+ H+K + +G +W Sbjct: 187 TSLSFSSGENSSDSDEETIKRLN----SGRKGLKVLRATADELEAHEKRLDIVGDACLWR 242 >gi|260775260|ref|ZP_05884157.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260608441|gb|EEX34606.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 246 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 135/247 (54%), Gaps = 18/247 (7%) Query: 4 KNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 N R +V D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ P Sbjct: 7 SNHNRIVVLDTETTGMNREGGPHYQGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQP 65 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-- 115 +A+++HGITDEFL DKP + + EF +F +AHNA FD GF++ E ++ Sbjct: 66 DAVEVHGITDEFLVDKPEYQDVHKEFLEFIKGAE--LVAHNAPFDTGFMDYEFNMLDPGI 123 Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M Sbjct: 124 GKTDDYCKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLM 183 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233 G + + F + E K R R T +EL+ H + + K Sbjct: 184 TGGQTSLQFNSGNADGNVGGESIKRAAGG----RKSLKVIRATADELEAHQNRLDLVEKS 239 Query: 234 -NAIWDR 239 + +W + Sbjct: 240 GSCLWRQ 246 >gi|90416118|ref|ZP_01224051.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2207] gi|90332492|gb|EAS47689.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2207] Length = 239 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 93/238 (39%), Positives = 141/238 (59%), Gaps = 11/238 (4%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ D RIIEIG VEL+ T R + ++ P RK A+++HGI Sbjct: 1 MRQIVLDTETTGLETSQDHRIIEIGCVELVGRKLTGRHYHQYVNPQ-RKVDVGAMEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSR 122 TD+FL+DKP F ++ EF +F + + + HNA FDVGFIN E+ + + R Sbjct: 60 TDQFLEDKPLFETVAREFLEFVDGAD--LVIHNAPFDVGFINHEIAKLNGAYQAIESGCR 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IIDTL++AR+KHP +N+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G +N Sbjct: 118 IIDTLALARQKHPGQKNNLDALCKRYGVDNSQRDLHGALLDAEILADVYLLMTGGQVNLN 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIW 237 + D + + ++ R ++EE++ H + ++ + K N +W Sbjct: 178 ISGQQASDGGQDNSRSGIRRLAQ-DRQPLRVVTASREEIERHQQKLEAINKSSGNCLW 234 >gi|49082166|gb|AAT50483.1| PA1816 [synthetic construct] Length = 247 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 82/240 (34%), Positives = 120/240 (50%), Gaps = 8/240 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ RIIEIG VEL T R F V+L P+ R+ A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRI 123 T+E+LKDKP F + ++F++F A + F Q+ D + + Sbjct: 60 TNEYLKDKPRFREVANDFFEFIRGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYCSV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR +HP RN+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G + ++ Sbjct: 120 LDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSLSL 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDR 239 E + R R EEL H + + K+A +W + Sbjct: 180 AGSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLWAQ 239 >gi|15597013|ref|NP_250507.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO1] gi|107101248|ref|ZP_01365166.1| hypothetical protein PaerPA_01002281 [Pseudomonas aeruginosa PACS2] gi|218892230|ref|YP_002441097.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa LESB58] gi|254234910|ref|ZP_04928233.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719] gi|296389793|ref|ZP_06879268.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAb1] gi|313110514|ref|ZP_07796399.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016] gi|9947801|gb|AAG05205.1|AE004608_4 DNA polymerase III, epsilon chain [Pseudomonas aeruginosa PAO1] gi|7229492|gb|AAF42851.1| mismatch repair protein MutD [Pseudomonas aeruginosa PAO1] gi|126166841|gb|EAZ52352.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719] gi|218772456|emb|CAW28238.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa LESB58] gi|310882901|gb|EFQ41495.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016] Length = 246 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 82/240 (34%), Positives = 120/240 (50%), Gaps = 8/240 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ RIIEIG VEL T R F V+L P+ R+ A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRI 123 T+E+LKDKP F + ++F++F A + F Q+ D + + Sbjct: 60 TNEYLKDKPRFREVANDFFEFIRGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYCSV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR +HP RN+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G + ++ Sbjct: 120 LDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSLSL 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDR 239 E + R R EEL H + + K+A +W + Sbjct: 180 AGSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLWAQ 239 >gi|170697939|ref|ZP_02889022.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] gi|170137105|gb|EDT05350.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] Length = 244 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 112/237 (47%), Gaps = 9/237 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + DR+IEIG VELL+ T +++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL+DKP F+ + + DF + +ID Sbjct: 60 TTEFLRDKPKFAEVVDQIRDFVKGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 + +++ L + +EL H + L K+ +W Sbjct: 180 LDDAGADGSAANGQRVSLASLVLP---VLAASDDELAAHQTQLDELDKSVKGTCVWR 233 >gi|77458414|ref|YP_347919.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf0-1] gi|77382417|gb|ABA73930.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens Pf0-1] Length = 252 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 124/247 (50%), Gaps = 11/247 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIAVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 +EFL KP F+ + EF++F N A + F Q D I+ Sbjct: 63 NEFLVGKPRFAEVADEFFEFINGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCTIL 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182 Query: 185 FKTNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 ++ E T R R T+ EL EH ++ + K+ A+W Sbjct: 183 GNASDGNGTGEGADNSATEIRRLPADRQPGRIIRATEAELAEHQVRLEIIAKSAGAPALW 242 Query: 238 DRYISSN 244 + + + Sbjct: 243 TQLLEAE 249 >gi|119385539|ref|YP_916595.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] gi|119375306|gb|ABL70899.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] Length = 239 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 96/240 (40%), Positives = 144/240 (60%), Gaps = 5/240 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVEL+++ T RTF V++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPDTGDRIVEIGAVELMNHLPTGRTFHVYINPE-RPMPQEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I ++F F + + + HNA FD+ F+NAEL+ + + SR +D Sbjct: 60 GDDFLRDKPKFAEIAADFVAFIGDDA-KLVIHNASFDMKFLNAELRMVGHATMPYSRAVD 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IAR P ++N L++LC+R+ I S+R+ HGALLDS LL++VY+ + GG Q Sbjct: 119 TLEIARSMFPGAQNSLDALCRRFRIDNSNRTLHGALLDSELLAEVYLA-LRGGRQPGLVL 177 Query: 186 KTNE-DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 ++ + +R +PL RIT+ E + H + +G+ A+W RY +N Sbjct: 178 ESGPMHGGTGTGAQAEGGTPRGQRPRPLAPRITEAEAEAHAAFVAKMGEKAVWLRYGDAN 237 >gi|329891169|ref|ZP_08269512.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC 11568] gi|328846470|gb|EGF96034.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC 11568] Length = 241 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 89/235 (37%), Positives = 137/235 (58%), Gaps = 10/235 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG D K DR+IE+G +E+ D T RTF F+ P R P+A+K+HGIT Sbjct: 3 REIVLDTETTGFDPKTGDRLIEVGCIEIEDLLPTGRTFHRFINPE-RLIPPDAIKVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ +KD P F + + +F + A IAHNA FD FI+ E+ RI + P R IDT Sbjct: 62 DDKVKDAPKFHEVVDDLMEFLGD--APLIAHNANFDRNFIDFEIGRIGRTPPPQDRWIDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LCKRY I++ R+ HGAL+D+ LL++VY++ + GG + Sbjct: 120 LALAQKRFPGMANSLDALCKRYKISLVERTLHGALIDARLLAEVYLE-LRGGKERALDLT 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ-TLGKNAIWDRY 240 + +T ++ R +PL + +T EE H ++ T+ ++W Y Sbjct: 179 ST----RGGAAETAERVAYGARPRPLPSFVTAEEEAAHLAFLKATIKDFSLWAGY 229 >gi|116049766|ref|YP_791427.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa UCBPP-PA14] gi|115584987|gb|ABJ11002.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa UCBPP-PA14] Length = 246 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 82/240 (34%), Positives = 120/240 (50%), Gaps = 8/240 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ RIIEIG VEL T R F V+L P+ R+ A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRI 123 T+E+LKDKP F + ++F++F A + F Q+ D + + Sbjct: 60 TNEYLKDKPRFREVANDFFEFIRGAQLIIHNAAFDIGFINNEFALLGQQDRSDVSEYCSV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR +HP RN+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G + ++ Sbjct: 120 LDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSLSL 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDR 239 E + R R EEL H + + K+A +W + Sbjct: 180 AGSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLWAQ 239 >gi|148546962|ref|YP_001267064.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1] gi|148511020|gb|ABQ77880.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1] Length = 252 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 81/244 (33%), Positives = 120/244 (49%), Gaps = 8/244 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ + RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDP 117 + +HGITD FL KP F + EF+ F A + F Q+ D Sbjct: 60 INVHGITDAFLVGKPRFGDVAEEFFQFIQGATLVIHNAAFDVGFINNEFALLGQQDRADI 119 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 I+DTL +AR +HP RN L++LCKRY I S R HGALLDS LL+DVY+ M G Sbjct: 120 SQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGG 179 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA-- 235 + ++ + + ++ R + EEL+ H + + + K+A Sbjct: 180 QTSLSLAGNGADAEEDGQGAGGSEIRRIVGRAPGRVIMASAEELEAHAERLAAIAKSAGG 239 Query: 236 --IW 237 +W Sbjct: 240 PSLW 243 >gi|119944269|ref|YP_941949.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37] gi|119862873|gb|ABM02350.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37] Length = 239 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 132/249 (53%), Gaps = 20/249 (8%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG++ RIIEIG VE+++ T R F V++ P+ R+ Sbjct: 1 MNTEKMIRQVVLDTETTGMNKGGTIYVGHRIIEIGCVEVINRRLTGRHFHVYVKPD-REI 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--- 112 PEA+ +HGITDEFL DKP+FS I EF +F + HNA FDVGF++ E + Sbjct: 60 DPEAIAVHGITDEFLHDKPAFSDIADEFIEFIKGAE--LVIHNAPFDVGFMDQEFRFLNK 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 K + S I DTL +AR+ +P R L++LC+ GI HR HGALLD+ +L+DVY+ Sbjct: 118 RTKPTAEISTITDTLVMARKMYPGKRASLDALCRELGIDNKHRVLHGALLDAEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G ++N D + + + +++E H+K + + Sbjct: 178 LMTGGQKKLNLSSSGQNDTNTGKRVRKTQS-------PLTIISASEDEQQAHEKRLDLIE 230 Query: 233 K--NAIWDR 239 K + +W Sbjct: 231 KSASCLWRE 239 >gi|26990834|ref|NP_746259.1| DNA polymerase III subunit epsilon [Pseudomonas putida KT2440] gi|24985842|gb|AAN69723.1|AE016608_9 DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440] Length = 252 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 81/244 (33%), Positives = 120/244 (49%), Gaps = 8/244 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ + RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDP 117 + +HGITD FL KP F + EF+ F A + F Q+ D Sbjct: 60 INVHGITDAFLVGKPRFGDVAEEFFQFIQGATLVIHNAAFDVGFINNEFALLGQQDRADI 119 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 I+DTL +AR +HP RN L++LCKRY I S R HGALLDS LL+DVY+ M G Sbjct: 120 SQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGG 179 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA-- 235 + ++ + + ++ R + EEL+ H + + + K+A Sbjct: 180 QTSLSLAGNGADTEEDGQGAGGSEIRRIVGRAPGRVIMASAEELEAHAERLAAIAKSAGG 239 Query: 236 --IW 237 +W Sbjct: 240 PSLW 243 >gi|310817168|ref|YP_003965132.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare Y25] gi|308755903|gb|ADO43832.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare Y25] Length = 224 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 93/227 (40%), Positives = 138/227 (60%), Gaps = 6/227 (2%) Query: 13 DIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTG + + DRI+EIG VELL++ T RT+ ++ P R +A K+HG++ EFL Sbjct: 2 DTETTGFEPETGDRIVEIGCVELLNHLPTGRTYHQYINPQ-RDMPEDAFKVHGLSAEFLS 60 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 DKP F+ + +F DF + N + HNA FDV F+NAEL + K + P+R +DTL IAR Sbjct: 61 DKPLFAQVAQDFLDFIGDAN--LVIHNAAFDVKFLNAELGWVKKPLIAPARAVDTLLIAR 118 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191 R+ P ++N L++LC+R+GI S R+ HGALLDS +L++VY++++ G Q +FG Sbjct: 119 RRFPGAQNSLDALCRRFGIDNSKRTLHGALLDSEILAEVYLELIG-GRQPDFGLSAAAST 177 Query: 192 FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + T R PL TR+T++E H ++ LG A W+ Sbjct: 178 PAQGN-VTRSAWRPQPRPNPLPTRLTEDEAKAHAAFVEKLGPEAAWN 223 >gi|167587486|ref|ZP_02379874.1| DNA polymerase III subunit epsilon [Burkholderia ubonensis Bu] Length = 242 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 114/238 (47%), Gaps = 9/238 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + + DF + + +ID Sbjct: 60 TTEFLSDKPKFAEVVDQIRDFVKGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCAGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 ++ +++ L + +EL H + L K+ +W R Sbjct: 180 LDDDAADGGAANGQRVSLASLDLP---VLAASDDELAAHQAQLDGLDKSVKGTCVWRR 234 >gi|260431958|ref|ZP_05785929.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260415786|gb|EEX09045.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 240 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 134/247 (54%), Gaps = 22/247 (8%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGA+EL ++ T T+ V++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAIELWNHVATGETYHVYINPE-RSMPAEAFGVHGI 59 Query: 66 -------------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 LKDKP F+ I F DF + + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQKPEPGQITLKDKPVFAQIGQAFRDFVGDAR--LVIHNAAFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + P+ + +DTL+IAR++ P S L++LC+R+ I S+R HGALLDS +L++VY+ Sbjct: 118 MGLPPIPMEQALDTLAIARKRFPGSPASLDALCRRFNIDNSNRVLHGALLDSEILAEVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ G Q +FG + R PL RIT EE H+ ++ LG Sbjct: 178 ELIG-GRQPDFGLSAARSDSGGGGE----TWRPGPRPAPLPPRITAEERAAHEAFVKKLG 232 Query: 233 KNAIWDR 239 NA+W R Sbjct: 233 DNALWTR 239 >gi|262276480|ref|ZP_06054289.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] gi|262220288|gb|EEY71604.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] Length = 247 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 95/253 (37%), Positives = 145/253 (57%), Gaps = 17/253 (6%) Query: 2 IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 ++ + R IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ Sbjct: 1 MKASYDRIIVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REI 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA+ +HGITDEFL+DKPS++ I +EF +F +AHNA FD GF++ E Q ++ Sbjct: 60 DPEAISVHGITDEFLRDKPSYADIHAEFLEFIKGAE--LVAHNAPFDTGFMDHEFQMLDP 117 Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 118 SIGKTGDFCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + + FG + D+ E K R + +EL EH+ + + Sbjct: 178 LMTGGQTTLKFGGSESSDQDSGGEAIRRVEAGTKK---LKIIRASADELKEHEAQLDVIE 234 Query: 233 KN--AIWDRYISS 243 K +W + S Sbjct: 235 KKGSCLWRQQESV 247 >gi|269101978|ref|ZP_06154675.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268161876|gb|EEZ40372.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 241 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 138/247 (55%), Gaps = 17/247 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R IVFD ETTG++ + RIIEIGAVE+++ T TF V++ P+ R Sbjct: 1 MKATNERIIVFDTETTGMNMSGPHYEGHRIIEIGAVEIINRKLTGNTFHVYIKPD-RAID 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA+++HGITDEFL KP+++ I EF DF +AHNA FD+GF++ E +++ Sbjct: 60 PEAIEVHGITDEFLVGKPTYAEIHQEFMDFIQGAE--LVAHNAPFDIGFMDYEFRKLGLK 117 Query: 117 PLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L ++ DTL +A+R P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 118 DLKTDEMCKVTDTLDMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLM 177 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 M Q + + E E + S R R + +E+ H+ + +GK Sbjct: 178 MTG--GQTSLQLSSGESSAAGAENEIRRLTSG--RKALKVIRASADEIAAHEDRLDLIGK 233 Query: 234 NA--IWD 238 A IW Sbjct: 234 KADVIWR 240 >gi|239993463|ref|ZP_04713987.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC 27126] Length = 239 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 81/238 (34%), Positives = 123/238 (51%), Gaps = 12/238 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D K RIIEIG VE+++ T F V++ P GR EA+++HGI Sbjct: 1 MRQIVLDTETTGIDPKEGHRIIEIGCVEVVNRRLTGNHFHVYINP-GRHIEQEAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123 T+EFL DKP+FS + EF F ++ K + Sbjct: 60 TNEFLADKPTFSQVAQEFVSFIKGAQLVIHNAPFDVGFMDHEFGMEASTKGVITNQICDV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL++AR+ HP +N+L++LCKRYGI SHR+ HGALLD+ +L+DVY+ M G +++ Sbjct: 120 LDTLTLARQMHPGQKNNLDALCKRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTKLKL 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238 + T +K + T +E+ +H+ + + K +W Sbjct: 180 -----ASSSGSDADSTAIRRVKRSANKLKVIKATADEITQHEARLDIVEKAGGKCLWR 232 >gi|167034708|ref|YP_001669939.1| DNA polymerase III subunit epsilon [Pseudomonas putida GB-1] gi|166861196|gb|ABY99603.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1] Length = 252 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 81/238 (34%), Positives = 118/238 (49%), Gaps = 4/238 (1%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ + RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDP 117 + +HGITD FL KP F + EF++F A + F Q+ D Sbjct: 60 INVHGITDAFLVGKPRFGDVAEEFFEFIQGATLVIHNAAFDVGFINNEFALIGQQDRADV 119 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 I+DTL +AR +HP RN L++LCKRY I S R HGALLDS LL+DVY+ M G Sbjct: 120 SQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGG 179 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + ++ + E + R + EEL+ H + + + K+A Sbjct: 180 QTSLSLAGHGADAEGEGSEAGGSEIRRITGRTPGRVIMASAEELEAHAERLAAIAKSA 237 >gi|77360888|ref|YP_340463.1| DNA polymerase III subunit epsilon [Pseudoalteromonas haloplanktis TAC125] gi|76875799|emb|CAI87020.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Pseudoalteromonas haloplanktis TAC125] Length = 237 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 86/238 (36%), Positives = 134/238 (56%), Gaps = 13/238 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG+D K RIIEIG VEL++ T F V++ P R + EA+ +HGIT Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQ-RNSEEEAIDVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRI 123 +EFL+DKP F I EF+D+ + HNA FD+G ++ E +N+ ++ Sbjct: 63 NEFLRDKPLFHQIAQEFFDYIKGAE--LVIHNAPFDIGHMDNEFSLLNQGYPKTATFCQV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR HP +N+L++LC+RY + + R+ HGALLDS +L+DVY+ M G ++N Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDVDNAKRTLHGALLDSEILADVYLAMTGGQVKLNL 180 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238 N+D +++K +R + ++ E H+ + + G + IW Sbjct: 181 NQNKNDDT---DQQKGGIRRLSAQRAPLVVLSASEAEQAAHEARLDIVNNEGGHCIWR 235 >gi|313498009|gb|ADR59375.1| DnaQ [Pseudomonas putida BIRD-1] Length = 252 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 81/244 (33%), Positives = 120/244 (49%), Gaps = 8/244 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ + RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDP 117 + +HGITD FL KP F + EF+ F A + F Q+ D Sbjct: 60 INVHGITDAFLVGKPRFGDVAEEFFQFIQGATLVIHNAAFDVGFINNEFALLGQQDRADI 119 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 I+DTL +AR +HP RN L++LCKRY I S R HGALLDS LL+DVY+ M G Sbjct: 120 SQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGG 179 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA-- 235 + ++ + + ++ R + EEL+ H + + + K+A Sbjct: 180 QTSLSLAGNGADAEEDGQGAGGSEIRRIVGRTPGRVIMASAEELEAHAERLAAIAKSAGG 239 Query: 236 --IW 237 +W Sbjct: 240 PSLW 243 >gi|254508645|ref|ZP_05120760.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16] gi|219548402|gb|EED25412.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16] Length = 247 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 136/247 (55%), Gaps = 17/247 (6%) Query: 4 KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 N+ R +V D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R Sbjct: 7 SNQHRIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RDIQA 65 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-- 115 EA+++HGITDEFL DKP + + +EF +F +AHNA FD GF++ E + ++ Sbjct: 66 EAVQVHGITDEFLVDKPEYQDVHAEFLEFIKGAE--LVAHNAPFDTGFMDYEFEMLDPSI 123 Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M Sbjct: 124 GKTDDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLM 183 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233 G + + F ++ E R R + +EL+ H + + K Sbjct: 184 TGGQTSLQFNAGNSDGSDVGGE---SIKRVASGRKALKVIRASADELEAHQNRLDIVEKS 240 Query: 234 -NAIWDR 239 + +W + Sbjct: 241 GSCLWRQ 247 >gi|326386170|ref|ZP_08207794.1| DNA polymerase III, epsilon subunit [Novosphingobium nitrogenifigens DSM 19370] gi|326209395|gb|EGD60188.1| DNA polymerase III, epsilon subunit [Novosphingobium nitrogenifigens DSM 19370] Length = 230 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 90/234 (38%), Positives = 128/234 (54%), Gaps = 6/234 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD + DR++EIG VEL++ T F + P+ R EA +HG+ Sbjct: 1 MREIVFDTETTGLDPRNGDRLVEIGCVELVNRIATGSVFHCYFNPD-RDMPAEAEAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + FL DKP FS +E DF + A +AHNA FD GF+N+EL + R++D Sbjct: 60 SAAFLSDKPKFSERAAELLDFLGD--APLVAHNAGFDFGFLNSELTFCGMGEVSRDRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T++IARRKHP ++ L++LC RYGI SHR+KHGALLD+ LL+ +Y+++M G QI Sbjct: 118 TVAIARRKHPGAKLSLDALCSRYGIDRSHRTKHGALLDAELLAQLYVELMG-GRQIGLEL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + E + EL H + + + +W R Sbjct: 177 AADTLTVAVSEDAPTRPQLARPFRPARPHSASVAELARHAEFMAGFA-DPLWSR 229 >gi|144899676|emb|CAM76540.1| DNA polymerase III, epsilon subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 228 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 91/234 (38%), Positives = 137/234 (58%), Gaps = 10/234 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D RI+EIG VEL ++ T + + ++ P R EA K+HG+ Sbjct: 1 MREIVLDTETTGFDPLTGHRIVEIGCVELFNHLPTGKVYHQYVNPE-RDMPEEAFKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +++FL DKP F+ I ++F DF + A + HNA+FD+ FINAEL R+ PL SR ID Sbjct: 60 SEQFLSDKPVFAEIVADFMDFIGD--AILVIHNAEFDMRFINAELSRLGFQPLPMSRSID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+++AR+K P ++ +L++LC+R+ I +HRS HGALLDS LL++VY++++ G Q Sbjct: 118 TVAMARKKFPGAQANLDALCRRFEIDNTHRSFHGALLDSELLAEVYLQLIG-GRQPGLEL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + + +P EEL+ H + L K A+W R Sbjct: 177 GLLGGNGKGGGGPVLERV----KREPRPHAALPEELEAHAAFVGKL-KKALWLR 225 >gi|194290095|ref|YP_002006002.1| DNA polymerase III subunit epsilon [Cupriavidus taiwanensis LMG 19424] gi|193223930|emb|CAQ69939.1| DNA polymerase III epsilon subunit [Cupriavidus taiwanensis LMG 19424] Length = 246 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 77/236 (32%), Positives = 112/236 (47%), Gaps = 11/236 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR+IEIG VEL++ T R ++ P R A+ +HGI Sbjct: 4 MRQIVLDTETTGLNAATGDRLIEIGCVELMNRRLTGRHLHFYVNPE-RDIDEGAIAVHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + + +F + + +L + +ID Sbjct: 63 TVEFLADKPRFAEVVHDIREFVQDAELIIHNAQFDLGFLDMEFQLLGLPPFRQHVGNVID 122 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL AR+ P RN L++LC+R GI+ +HR HGALLD+ LL++VY+ M G + Sbjct: 123 TLREARQMFPGKRNSLDALCERLGISNAHRKLHGALLDAELLAEVYLAMTRGQDSLVID- 181 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237 + V + L R R T EE H ++ L K +W Sbjct: 182 ----TLDGGSGQDGVVTTADLSRLTLPVLRATDEEQQAHLALLKGLDKASGGKTVW 233 >gi|311103923|ref|YP_003976776.1| DNA polymerase III subunit epsilon [Achromobacter xylosoxidans A8] gi|310758612|gb|ADP14061.1| DNA polymerase III, epsilon subunit [Achromobacter xylosoxidans A8] Length = 240 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 110/239 (46%), Gaps = 11/239 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTGLD + RI+EIG VE+++ T ++L P+ R + PEAL +HG+ Sbjct: 1 MRQIIFDTETTGLDPAQGHRIVEIGCVEMVNRMSTGNNLHIYLNPD-RDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + EF F + D Sbjct: 60 TTEFLSDKPRFADVADEFVKFIQGAELIAHNAAFDVKFFNAELAKTGRGPVTDYCETVTD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L AR P RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M G + Sbjct: 120 SLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLIDV 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRY 240 ++ + ++ EL EH+ + L K+ W + Sbjct: 180 DDGASAG-----GNGVELARFDASGLPVIKASEAELAEHETYLAALDKSVGGECTWRKI 233 >gi|330810139|ref|YP_004354601.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378247|gb|AEA69597.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 253 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 123/246 (50%), Gaps = 11/246 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 +EFL KP F+ + EF++F A + F Q D I+ Sbjct: 63 NEFLVGKPRFAEVADEFFEFIQGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCTIL 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182 Query: 185 FKTNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 ++ E + T R R ++ +L EH ++ + K+ A+W Sbjct: 183 GNASDGNGTGEGSGNQATEIRRLPADRQPSRIIRASESDLAEHAARLEAIAKSAGAPALW 242 Query: 238 DRYISS 243 + S Sbjct: 243 TQLAES 248 >gi|254437617|ref|ZP_05051111.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus 307] gi|198253063|gb|EDY77377.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus 307] Length = 242 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 20/247 (8%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGA+EL ++ T RT+ ++ P R A +HGI Sbjct: 1 MREIVLDTETTGFEPSEGDRIVEIGAIELHNHMPTGRTYHQYINPK-RSMPAGAFGIHGI 59 Query: 66 TDEFLKDK-------------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L P F+ I F DF + A+ + HNA FD+ F+NAEL Sbjct: 60 GPDLLDPPQTPTAGQVILRDKPVFADIAQAFVDFIGD--AKLVIHNAAFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +N+ L + +DTL IAR+K P S L++LC+R+GI S+R+ HGALLDS +L++VY+ Sbjct: 118 VNRPLLPMDQSLDTLGIARKKFPGSPASLDALCRRFGIDNSNRTLHGALLDSEILAEVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ G K + R PL +I E+ H I++LG Sbjct: 178 ELIGGRQP---DLVMGGQTSSKSKTAAEGEWRAQPRPTPLAPKIKAAEVGAHAAFIKSLG 234 Query: 233 KNAIWDR 239 + A+W++ Sbjct: 235 ETALWNK 241 >gi|115351214|ref|YP_773053.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD] gi|115281202|gb|ABI86719.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD] Length = 244 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 73/238 (30%), Positives = 113/238 (47%), Gaps = 9/238 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + DR+IEIG VELL+ T +++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + + DF + + +ID Sbjct: 60 TTEFLSDKPKFAEVVDQIRDFVKDAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 + +++ L + +EL H + L K+ +W + Sbjct: 180 LDDAGADGGAANGQRVSLASL---ALPVLSASDDELAAHQTQLDELDKSVKGTCVWRQ 234 >gi|254514367|ref|ZP_05126428.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR5-3] gi|219676610|gb|EED32975.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR5-3] Length = 240 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 129/239 (53%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + RIIEIG VEL + T R F ++ P R A+++HGI Sbjct: 1 MRQIVLDTETTGLEVSQGHRIIEIGCVELQNRLLTGRHFHRYINPE-RDIDAGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122 T FL DKP FS++ +F DF + I HNA FD+GF+++EL RI+ L Sbjct: 60 TATFLADKPVFSAVAKDFVDFVDGAE--LIIHNAPFDIGFLDSELSRIDPAALPLAQRCE 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I DTL +AR +HP RN L++LC+RY + S R HGALLD+ +L+DVY+ M G + + Sbjct: 118 ITDTLVMARSRHPGQRNSLDALCQRYAVDNSSRDLHGALLDAEILADVYLTMTGGQTALA 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238 G + + + + R + + EL H+ + ++ G +W Sbjct: 178 LGGDDGDSQGRTRPRGLIR--LPENRPRLPVIEPSDSELAAHEAQLDSIAAAGTEPLWR 234 >gi|126734401|ref|ZP_01750148.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2] gi|126717267|gb|EBA14131.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2] Length = 241 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 136/246 (55%), Gaps = 20/246 (8%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL+ + T RT+ ++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFEPHEGDRIVEIGAVELMGHVPTGRTYHQYINPQ-RSMPAEAFGVHGI 59 Query: 66 -------------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 E L+DKP F + +F DF + A+ + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQDPKPGQETLRDKPLFKDVAQDFVDFVGD--AKLVIHNAAFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +N+ L + +DTL+IARRK P S L++LC+R+ I S R+ HGALLDS +L++VY+ Sbjct: 118 LNRPLLPMDQALDTLAIARRKFPGSPASLDALCRRFAIDNSSRTLHGALLDSEILAEVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ G Q +F D + R +PL ++T EE H ++ LG Sbjct: 178 ELIG-GRQPDFALAA--DTRSQSAGGQSDEWRPSARPEPLAPKLTIEEAAAHAAFVEQLG 234 Query: 233 KNAIWD 238 AIW Sbjct: 235 DGAIWK 240 >gi|312883833|ref|ZP_07743552.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC BAA-2122] gi|309368582|gb|EFP96115.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC BAA-2122] Length = 244 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 91/242 (37%), Positives = 135/242 (55%), Gaps = 19/242 (7%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R EA+ Sbjct: 11 RIIVLDTETTGMNLEGGPHYQGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RDIQAEAVG 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118 +HGITDEFL+DKP + + +EF F N +AHNA FDVGF++ E Sbjct: 70 VHGITDEFLRDKPEYKDVHAEFLAFINGAE--LVAHNASFDVGFMDYEFSMLDASIGKTA 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 QYCKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 + + F + + + K+ R R T +E+D H+K ++ + KN + Sbjct: 188 TSLQFNAGSASEEGVESIKRAAQG-----RKALKVLRATADEIDAHEKRLELIEKNGHCL 242 Query: 237 WD 238 W Sbjct: 243 WR 244 >gi|254240209|ref|ZP_04933531.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192] gi|126193587|gb|EAZ57650.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192] Length = 246 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 82/240 (34%), Positives = 120/240 (50%), Gaps = 8/240 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ RIIEIG VEL T R F V+L P+ R+ A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRHLTGRHFHVYLQPD-REVDEGAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRI 123 T+E+LKDKP F + ++F++F A + F Q+ D + + Sbjct: 60 TNEYLKDKPRFREVANDFFEFIRGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYCSV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR +HP RN+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G + ++ Sbjct: 120 LDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSLSL 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDR 239 E + R R EEL H + + K+A +W + Sbjct: 180 AGSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLWAQ 239 >gi|172060228|ref|YP_001807880.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6] gi|171992745|gb|ACB63664.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6] Length = 244 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 73/238 (30%), Positives = 112/238 (47%), Gaps = 9/238 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + DR+IEIG VELL+ T +++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + + DF + +ID Sbjct: 60 TTEFLSDKPKFAEVVDQIRDFVKGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 + +++ L + +EL H + L K+ +W + Sbjct: 180 LDDAGADGGAANGQRVSLASL---ALPVLAASDDELAAHQTQLDELDKSVKGTCVWRQ 234 >gi|149377452|ref|ZP_01895195.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893] gi|149358293|gb|EDM46772.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893] Length = 236 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 82/243 (33%), Positives = 135/243 (55%), Gaps = 11/243 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D + RIIEIG VEL++ T R + V++ P R+ EA+ +HGI Sbjct: 1 MRQIVLDTETTGIDPAEGHRIIEIGCVELMERQITGRHYHVYINPE-REVEAEAITVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+EFL DKP F++I EF++F + + + ++D Sbjct: 60 TNEFLADKPKFAAIADEFFEFIKGAELVIHNAAFDIGFMDSEFARLKPVRRTTEHCGVVD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L+IAR+KHP +N+L++LCKRYGI S+R HGALLD+ +L+DVY+ + G + ++ Sbjct: 120 SLAIARKKHPGQKNNLDALCKRYGIDNSNRELHGALLDAEILADVYLLLTGGQTALSLDA 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDRYIS 242 +E ++ + R+ R + +E + HD+ + L K A +WD+ ++ Sbjct: 180 GGDEAGGEGGIRRLADD-----RNPLPVPRASDDERNAHDEFMALLAKQAGTTVWDK-LT 233 Query: 243 SNQ 245 + + Sbjct: 234 TEE 236 >gi|188534758|ref|YP_001908555.1| DNA polymerase III subunit epsilon [Erwinia tasmaniensis Et1/99] gi|188029800|emb|CAO97680.1| DNA polymerase III epsilon subunit [Erwinia tasmaniensis Et1/99] Length = 249 Score = 145 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 90/249 (36%), Positives = 136/249 (54%), Gaps = 17/249 (6%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T F V+L P+ R Sbjct: 1 MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI DEFL DKP+F+ I +F + N + HNA FD+GF++ E ++ + Sbjct: 60 DPEAFGVHGIADEFLLDKPTFAQIADDFLAYINGAE--LVIHNASFDIGFMDYEFAKLQR 117 Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +I D+L++ARR P RN L++LC RY I S R+ HGALLDS +L++V++ Sbjct: 118 GIAKTDTFCKITDSLAMARRLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M Q + F +R +++ +TV I+ R ++EEL H+ + + Sbjct: 178 TMTG--GQTSLAFSMEGERGKQQDGETVHRIAR-PSSGLRVVRASEEELFAHEARLDLVE 234 Query: 233 KN---AIWD 238 K +W Sbjct: 235 KKGGSCLWR 243 >gi|92114064|ref|YP_573992.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens DSM 3043] gi|91797154|gb|ABE59293.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens DSM 3043] Length = 253 Score = 145 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 88/253 (34%), Positives = 136/253 (53%), Gaps = 17/253 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D K R+IEIGAVE+++ T + ++ P R PEA+++HGI Sbjct: 1 MRQIVLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPE-RDIDPEAVEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-------- 117 T+E + D+P F+ I FW++ + HNA FDVGFI+ E ++ Sbjct: 60 TNERVADEPVFADIADAFWEYIRGAE--LVIHNAAFDVGFIDHEFGLLHDKRGGPRLGPV 117 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D ++DTL++AR+ HP RN+L++LCKRYGI R HGALLD+ +LSDVY+ M G Sbjct: 118 ADYCSVLDTLAMARKLHPGQRNNLDALCKRYGIDNGRRVLHGALLDAEILSDVYLTMTGG 177 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQTL---G 232 + ++ ++ +V I + R+ TR ++ E H + ++ Sbjct: 178 QTALSLAGIEERAGDEGQDANSVSGIRRVSREGLSLAVTRPSEAEEAAHRAKLDSIRQAA 237 Query: 233 KNAIWDRYISSNQ 245 WD ++Q Sbjct: 238 GQCHWDALNDASQ 250 >gi|171318244|ref|ZP_02907407.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] gi|171096588|gb|EDT41482.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] Length = 244 Score = 145 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 112/237 (47%), Gaps = 9/237 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + DR+IEIG VELL+ T +++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + + DF + + +ID Sbjct: 60 TTEFLSDKPKFAEVVDQIRDFVKDAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 + +++ L + +EL H + L K+ +W Sbjct: 180 LDDAGADGGAANGQRVSLASLDLP---VLAASDDELAAHQTQLDELDKSVKGTCVWR 233 >gi|257095469|ref|YP_003169110.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047993|gb|ACV37181.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 238 Score = 145 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 80/238 (33%), Positives = 114/238 (47%), Gaps = 9/238 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL+ K RIIEI VE+ + TNR F +L P+ R AL +HGI Sbjct: 1 MRQIFLDTETTGLEHKFGHRIIEIACVEMRNRRLTNRHFHRYLNPD-RDIDAGALSVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + EF DF L + + D Sbjct: 60 SREFLLDKPRFADVAVEFLDFVRGAELVIHNAAFDVGFLNAELALLDMAPVDTVCHGVCD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +A+ HP +N+LN+LC+RYG+ SHR+ HGALLD+ +L++VY+ M G + Sbjct: 120 TLRMAKDLHPGKKNNLNALCERYGVDNSHRTLHGALLDAEILAEVYLAMTRGQESLIMDL 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWDR 239 + +T S +R R + EEL EH + + + +W R Sbjct: 180 GDDNGGRLDTAGRT---PSPGRRQTLQVKRASPEELAEHQQVLTAIQEASKGKCLWLR 234 >gi|170722630|ref|YP_001750318.1| DNA polymerase III subunit epsilon [Pseudomonas putida W619] gi|169760633|gb|ACA73949.1| DNA polymerase III, epsilon subunit [Pseudomonas putida W619] Length = 254 Score = 145 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 82/238 (34%), Positives = 118/238 (49%), Gaps = 4/238 (1%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ + RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDKRLVILDTETTGMPVSEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDP 117 + +HGITD FL KP F + EF++F A + F QR D Sbjct: 60 INVHGITDAFLVGKPRFGDVAEEFFEFIQGATLVIHNAAFDVGFINNEFALLGQRDRADI 119 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 I+DTL +AR +HP RN L++LCKRY I S R HGALLDS LL+DVY+ M G Sbjct: 120 SQHCTILDTLLLARARHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGG 179 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + ++ + + + R T EEL+ H + + + K+A Sbjct: 180 QTSLSLAGNGADGDNEGQGSGGSEIRRITGRAPGRVIMATAEELEAHAERLAAIAKSA 237 >gi|156935271|ref|YP_001439187.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii ATCC BAA-894] gi|156533525|gb|ABU78351.1| hypothetical protein ESA_03124 [Cronobacter sakazakii ATCC BAA-894] Length = 243 Score = 145 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 124/242 (51%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFMV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI+DEFL +KP F + +F D+ + HNA FD+GF++ E +N+ Sbjct: 66 HGISDEFLMNKPVFGDVVDDFLDYIRGAE--LVIHNASFDIGFMDYEFGMLNRGIPKTET 123 Query: 123 IIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 AR+ P RN L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 I F + + +++ T + + + R EEL H+ + + K + Sbjct: 184 SIAFAMEGDGQ---QQQGDTGIQRVVRQASRLKVVRACDEELAAHESRLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|319780604|ref|YP_004140080.1| DNA polymerase III, subunit epsilon [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166492|gb|ADV10030.1| DNA polymerase III, epsilon subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 233 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 100/235 (42%), Positives = 145/235 (61%), Gaps = 4/235 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLDS++DR+IE+G VEL++ T RTF ++ P GR EA +HGI+ Sbjct: 1 MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHVEAQAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L KP+F+ I E+ D A+ +AHNA FDVGF+N E R+ +D ++DT Sbjct: 61 AADLAGKPTFAEIVQEWLD--FTDGAKLVAHNATFDVGFLNVEFGRLGHPVIDNGVVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LC+RYGI + R+KHGALLDS LL++VYI+++ G Q Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNTKRTKHGALLDSELLAEVYIELIG-GKQAALILD 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 + E + + I + R PL R+T+ E H + TLG+ A+W + + Sbjct: 178 SATAPAQGENVRQI-EIVVAPRPAPLPPRVTEAERAAHAGMVGTLGEKALWLKVL 231 >gi|148555737|ref|YP_001263319.1| DNA polymerase III subunit epsilon [Sphingomonas wittichii RW1] gi|148500927|gb|ABQ69181.1| DNA polymerase III, epsilon subunit [Sphingomonas wittichii RW1] Length = 234 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 129/233 (55%), Gaps = 7/233 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGL+ DR++EIG VEL++ +T +F + P R EA ++HG+ Sbjct: 1 MREIVFDTETTGLNPATGDRLVEIGCVELVNRVETGNSFHCYFNPQ-RSMPFEAEQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ FL DKP F+ E F + +AHNA FD GF+N EL + +D R++D Sbjct: 60 SERFLSDKPLFADKVEELLAFIGDA--PLVAHNASFDFGFLNWELGACGRSIVDMGRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IAR+ HP +++ L++LC RYGI SHR KHGALLD+ LL+ +Y+++ G QI Sbjct: 118 TLQIARKMHPGAKHSLDALCSRYGIDRSHRVKHGALLDAQLLAQLYVELTG-GRQIGLSM 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK-PLFTRITKEELDEHDKTIQTLGKNAIW 237 ++ + + ++EEL+ H ++ L +W Sbjct: 177 GEAVVEEVVVVATPRATVAASRTIRAIRPHFASEEELERHKAFVEKLD-APLW 228 >gi|238750479|ref|ZP_04611980.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380] gi|238711410|gb|EEQ03627.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380] Length = 259 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 134/249 (53%), Gaps = 17/249 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLIDPEAYGV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+DEFL DKP+F+ I EF +F + HNA FD+GF++ E + + +D Sbjct: 71 HGISDEFLADKPTFADITPEFLEFIRGAE--LVIHNAAFDIGFMDYEFRMLQQDIPKTET 128 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 ++F + ++ + E ++EL H+ + + K + Sbjct: 189 SLSFSMEGDQSQNNSSEDIQRITRPAS---GLKIIYAAEDELKAHESRLDLVMKKGGSCL 245 Query: 237 WDRYISSNQ 245 W + + + Sbjct: 246 WRMPLDTEE 254 >gi|74310830|ref|YP_309249.1| DNA polymerase III subunit epsilon [Shigella sonnei Ss046] gi|82542808|ref|YP_406755.1| DNA polymerase III subunit epsilon [Shigella boydii Sb227] gi|157156660|ref|YP_001461381.1| DNA polymerase III subunit epsilon [Escherichia coli E24377A] gi|157159676|ref|YP_001456994.1| DNA polymerase III subunit epsilon [Escherichia coli HS] gi|187734104|ref|YP_001879012.1| DNA polymerase III subunit epsilon [Shigella boydii CDC 3083-94] gi|191167032|ref|ZP_03028854.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A] gi|193067693|ref|ZP_03048660.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019] gi|194427534|ref|ZP_03060082.1| DNA polymerase III, epsilon subunit [Escherichia coli B171] gi|194432694|ref|ZP_03064979.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012] gi|209917402|ref|YP_002291486.1| DNA polymerase III subunit epsilon [Escherichia coli SE11] gi|218552790|ref|YP_002385703.1| DNA polymerase III subunit epsilon [Escherichia coli IAI1] gi|218693677|ref|YP_002401344.1| DNA polymerase III subunit epsilon [Escherichia coli 55989] gi|260842441|ref|YP_003220219.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2 str. 12009] gi|260853420|ref|YP_003227311.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O26:H11 str. 11368] gi|260866358|ref|YP_003232760.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O111:H- str. 11128] gi|293418309|ref|ZP_06660744.1| DNA polymerase III [Escherichia coli B088] gi|332281343|ref|ZP_08393756.1| DNA polymerase III epsilon subunit [Shigella sp. D9] gi|73854307|gb|AAZ87014.1| DNA polymerase III epsilon subunit [Shigella sonnei Ss046] gi|81244219|gb|ABB64927.1| DNA polymerase III epsilon subunit [Shigella boydii Sb227] gi|157065356|gb|ABV04611.1| DNA polymerase III, epsilon subunit [Escherichia coli HS] gi|157078690|gb|ABV18398.1| DNA polymerase III, epsilon subunit [Escherichia coli E24377A] gi|187431096|gb|ACD10370.1| DNA polymerase III, epsilon subunit [Shigella boydii CDC 3083-94] gi|190902925|gb|EDV62652.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A] gi|192959105|gb|EDV89541.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019] gi|194414304|gb|EDX30578.1| DNA polymerase III, epsilon subunit [Escherichia coli B171] gi|194418956|gb|EDX35040.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012] gi|209910661|dbj|BAG75735.1| DNA polymerase III epsilon subunit [Escherichia coli SE11] gi|218350409|emb|CAU96094.1| DNA polymerase III epsilon subunit [Escherichia coli 55989] gi|218359558|emb|CAQ97098.1| DNA polymerase III epsilon subunit [Escherichia coli IAI1] gi|257752069|dbj|BAI23571.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O26:H11 str. 11368] gi|257757588|dbj|BAI29085.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2 str. 12009] gi|257762714|dbj|BAI34209.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O111:H- str. 11128] gi|291324837|gb|EFE64252.1| DNA polymerase III [Escherichia coli B088] gi|320186397|gb|EFW61129.1| DNA polymerase III epsilon subunit [Shigella flexneri CDC 796-83] gi|320201190|gb|EFW75773.1| DNA polymerase III epsilon subunit [Escherichia coli EC4100B] gi|323160256|gb|EFZ46213.1| DNA polymerase III, epsilon subunit [Escherichia coli E128010] gi|323165914|gb|EFZ51696.1| DNA polymerase III, epsilon subunit [Shigella sonnei 53G] gi|323171002|gb|EFZ56651.1| DNA polymerase III, epsilon subunit [Escherichia coli LT-68] gi|323176527|gb|EFZ62119.1| DNA polymerase III, epsilon subunit [Escherichia coli 1180] gi|323181627|gb|EFZ67042.1| DNA polymerase III, epsilon subunit [Escherichia coli 1357] gi|324115459|gb|EGC09401.1| DNA polymerase III [Escherichia coli E1167] gi|332093741|gb|EGI98796.1| DNA polymerase III, epsilon subunit [Shigella boydii 3594-74] gi|332095033|gb|EGJ00068.1| DNA polymerase III, epsilon subunit [Shigella boydii 5216-82] gi|332097572|gb|EGJ02551.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 155-74] gi|332103695|gb|EGJ07041.1| DNA polymerase III epsilon subunit [Shigella sp. D9] Length = 243 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ + + + K T EEL H+ + + K + Sbjct: 184 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVEKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|332186931|ref|ZP_08388672.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. S17] gi|332012941|gb|EGI55005.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. S17] Length = 232 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 100/233 (42%), Positives = 139/233 (59%), Gaps = 9/233 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTG S+ DR++EIG VEL++ +T RT+ + P R EA +HG+ Sbjct: 1 MREIVFDTETTGFKFSEGDRLVEIGCVELVNRVETGRTYHAYFNPE-RSMPAEAQAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRII 124 +D FLKDKP F+ +EF DF + A IAHNA FD GFIN EL + + +R++ Sbjct: 60 SDAFLKDKPVFAEGVAEFLDFIGD--APLIAHNATFDFGFINGELGALGFPHVCEKTRMV 117 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL+IAR KHP +++ L++LC RYGI SHR HGALLD+ LL+ VY+++M G QI G Sbjct: 118 DTLAIARSKHPGAKHTLDALCSRYGIDRSHRVLHGALLDAQLLAQVYVELMG-GRQIGLG 176 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + D + TV + R P R + EL H ++ + + IW Sbjct: 177 LLAD-DAGQGTQTITVTRAPAIVRP-PRVFRPSDAELAAHAAFLKGIA-DPIW 226 >gi|22126970|ref|NP_670393.1| DNA polymerase III subunit epsilon [Yersinia pestis KIM 10] gi|45442535|ref|NP_994074.1| DNA polymerase III subunit epsilon [Yersinia pestis biovar Microtus str. 91001] gi|51597279|ref|YP_071470.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP 32953] gi|108806557|ref|YP_650473.1| DNA polymerase III subunit epsilon [Yersinia pestis Antiqua] gi|108813076|ref|YP_648843.1| DNA polymerase III subunit epsilon [Yersinia pestis Nepal516] gi|145598912|ref|YP_001162988.1| DNA polymerase III subunit epsilon [Yersinia pestis Pestoides F] gi|149366915|ref|ZP_01888949.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125] gi|153948473|ref|YP_001400036.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP 31758] gi|162419464|ref|YP_001607083.1| DNA polymerase III subunit epsilon [Yersinia pestis Angola] gi|165924368|ref|ZP_02220200.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165938341|ref|ZP_02226899.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166011939|ref|ZP_02232837.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211805|ref|ZP_02237840.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167399939|ref|ZP_02305457.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419869|ref|ZP_02311622.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424264|ref|ZP_02316017.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023355|ref|YP_001719860.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis YPIII] gi|186896384|ref|YP_001873496.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis PB1/+] gi|218928251|ref|YP_002346126.1| DNA polymerase III subunit epsilon [Yersinia pestis CO92] gi|229841013|ref|ZP_04461172.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843118|ref|ZP_04463264.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229895464|ref|ZP_04510636.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A] gi|229903519|ref|ZP_04518632.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516] gi|270487300|ref|ZP_06204374.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27] gi|294503098|ref|YP_003567160.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003] gi|21960013|gb|AAM86644.1|AE013910_6 DNA polymerase III, epsilon subunit [Yersinia pestis KIM 10] gi|45437400|gb|AAS62951.1| DNA polymerase III, epsilon chain [Yersinia pestis biovar Microtus str. 91001] gi|51590561|emb|CAH22202.1| DNA polymerase III, epsilon chain [Yersinia pseudotuberculosis IP 32953] gi|108776724|gb|ABG19243.1| DNA polymerase III, epsilon subunit [Yersinia pestis Nepal516] gi|108778470|gb|ABG12528.1| DNA polymerase III, epsilon subunit [Yersinia pestis Antiqua] gi|115346862|emb|CAL19748.1| DNA polymerase III, epsilon chain [Yersinia pestis CO92] gi|145210608|gb|ABP40015.1| DNA polymerase III, epsilon subunit [Yersinia pestis Pestoides F] gi|149291289|gb|EDM41364.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125] gi|152959968|gb|ABS47429.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis IP 31758] gi|162352279|gb|ABX86227.1| DNA polymerase III, epsilon subunit [Yersinia pestis Angola] gi|165913719|gb|EDR32338.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165923428|gb|EDR40560.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165989106|gb|EDR41407.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166207576|gb|EDR52056.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166962610|gb|EDR58631.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050647|gb|EDR62055.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057113|gb|EDR66876.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749889|gb|ACA67407.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis YPIII] gi|186699410|gb|ACC90039.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis PB1/+] gi|229679289|gb|EEO75392.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516] gi|229689465|gb|EEO81526.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229697379|gb|EEO87426.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701619|gb|EEO89646.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A] gi|262361135|gb|ACY57856.1| DNA polymerase III subunit epsilon [Yersinia pestis D106004] gi|270335804|gb|EFA46581.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27] gi|294353557|gb|ADE63898.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003] gi|320014218|gb|ADV97789.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 254 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 132/249 (53%), Gaps = 17/249 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+DEFL DKP+F+ I EF DF + HNA FD+GF++ E + + +D Sbjct: 66 HGISDEFLADKPTFADITPEFLDFIRGAE--LVIHNAAFDIGFMDYEFRMLQQDIPKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAI 236 + F + + E T++EL H+ + G + + Sbjct: 184 SLTFSMEGEVSQNNASEDIQRITRPAS---ALKIIYATEDELANHESRLDFVMKKGGSCL 240 Query: 237 WDRYISSNQ 245 W + + + Sbjct: 241 WRMPLEAEE 249 >gi|42520014|ref|NP_965929.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|99034422|ref|ZP_01314429.1| hypothetical protein Wendoof_01000768 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|42409751|gb|AAS13863.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 231 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 95/240 (39%), Positives = 143/240 (59%), Gaps = 11/240 (4%) Query: 4 KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 ++K+R+IV D ETTGLD++ RIIEIG VEL++ T + F +L P R + K+ Sbjct: 2 ESKLREIVLDTETTGLDTESGHRIIEIGCVELINRIPTGKVFHRYLNPE-RDIPYHSFKI 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI++EFL+DKP FS + EF DF N + HNA+FDV F+N EL ++N + R Sbjct: 61 HGISEEFLEDKPLFSDVALEFLDFI--SNDILVIHNAEFDVKFLNMELSKLNARLISSDR 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+K S LN+LCKR+ I++ +R HGAL+D+ LL+ VY+++ G Sbjct: 119 VLDTLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTFL 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 F + N+D + V N++ P EE+DEH K + + N +W++YI Sbjct: 179 FDNECNQDSNSTFVQHKVRNLT------PREHLPNSEEIDEHKKLLDKIN-NTLWNKYIE 231 >gi|325527245|gb|EGD04625.1| DNA polymerase III subunit epsilon [Burkholderia sp. TJI49] Length = 243 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 113/238 (47%), Gaps = 9/238 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + DR+IEIG VELL+ T +++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + + DF + +ID Sbjct: 60 TTEFLSDKPKFAEVVDQIRDFVKGAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 +E +++ L + +EL H + L K+ +W + Sbjct: 180 LDDEAADGGAGGGQRVSLASLDLP---VLAASDDELAAHQTQLDELDKSVKGTCVWRQ 234 >gi|260596631|ref|YP_003209202.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032] gi|260215808|emb|CBA28259.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032] Length = 243 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 129/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFMV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---ELQRINKDPLD 119 HGI+DEFL +KP F + +F D+ + HNA FD+GF++ L+R Sbjct: 66 HGISDEFLMNKPVFGDVVEDFLDYIRGAE--LVIHNASFDIGFMDYEFGMLKRGLPKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 I F + + ++ T + + + R EEL H+ + + K + Sbjct: 184 SIAFAMEGDGQ---QQRDDTGIQRVVRQASRLKVVRACDEELAAHESRLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|312795584|ref|YP_004028506.1| DNA polymerase III, epsilon chain [Burkholderia rhizoxinica HKI 454] gi|312167359|emb|CBW74362.1| DNA polymerase III, epsilon chain (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 247 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 75/238 (31%), Positives = 112/238 (47%), Gaps = 10/238 (4%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTGL++K DRIIEIG VE+++ T ++ P R + P AL +HG+ Sbjct: 1 MRLLVLDTETTGLNAKGGDRIIEIGCVEIVNRQLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL+DKP F+ I DF + + + + +ID Sbjct: 60 TTEFLRDKPKFAEIADALRDFVKDADIIIHNAPFDIGFLNAEFAMLGLPPFCDHCGEVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A+ P RN L++LC+R+GI+ +HR+ HGALLD+ LL+DVY+ M G + Sbjct: 120 TLVQAKAMFPGKRNSLDALCERFGISNAHRTLHGALLDAELLADVYLAMTRGQESLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 + V L + + + +EL H + L K +W Sbjct: 180 LADTPGSGSVATTRVS----LAQFELPVISASDDELAAHAGVLDELDKARKGPCVWRE 233 >gi|193063208|ref|ZP_03044299.1| DNA polymerase III, epsilon subunit [Escherichia coli E22] gi|256020181|ref|ZP_05434046.1| DNA polymerase III subunit epsilon [Shigella sp. D9] gi|300819828|ref|ZP_07100014.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1] gi|300823399|ref|ZP_07103529.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7] gi|300926565|ref|ZP_07142351.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1] gi|301326098|ref|ZP_07219494.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1] gi|307314695|ref|ZP_07594293.1| DNA polymerase III, epsilon subunit [Escherichia coli W] gi|309797929|ref|ZP_07692309.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7] gi|331666456|ref|ZP_08367336.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271] gi|331675873|ref|ZP_08376590.1| DNA polymerase III, epsilon subunit [Escherichia coli H591] gi|192931116|gb|EDV83719.1| DNA polymerase III, epsilon subunit [Escherichia coli E22] gi|300417423|gb|EFK00734.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1] gi|300524017|gb|EFK45086.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7] gi|300527586|gb|EFK48648.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1] gi|300847158|gb|EFK74918.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1] gi|306905814|gb|EFN36339.1| DNA polymerase III, epsilon subunit [Escherichia coli W] gi|308118469|gb|EFO55731.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7] gi|315059428|gb|ADT73755.1| DNA polymerase III, epsilon subunit [Escherichia coli W] gi|320173695|gb|EFW48884.1| DNA polymerase III epsilon subunit [Shigella dysenteriae CDC 74-1112] gi|320179852|gb|EFW54798.1| DNA polymerase III epsilon subunit [Shigella boydii ATCC 9905] gi|323380013|gb|ADX52281.1| DNA polymerase III, epsilon subunit [Escherichia coli KO11] gi|323945583|gb|EGB41633.1| DNA polymerase III [Escherichia coli H120] gi|324020673|gb|EGB89892.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 117-3] gi|331066301|gb|EGI38179.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271] gi|331076433|gb|EGI47710.1| DNA polymerase III, epsilon subunit [Escherichia coli H591] Length = 246 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ + + + K T EEL H+ + + K + Sbjct: 187 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVEKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|191171395|ref|ZP_03032944.1| DNA polymerase III, epsilon subunit [Escherichia coli F11] gi|190908329|gb|EDV67919.1| DNA polymerase III, epsilon subunit [Escherichia coli F11] gi|222032040|emb|CAP74779.1| DNA polymerase III subunit epsilon [Escherichia coli LF82] gi|312944818|gb|ADR25645.1| DNA polymerase III subunit epsilon [Escherichia coli O83:H1 str. NRG 857C] gi|320197298|gb|EFW71914.1| DNA polymerase III epsilon subunit [Escherichia coli WV_060327] Length = 243 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNATFDIGFMDYEFSLLKRDIPKTNT 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ +T + + K T EEL H+ + + K + Sbjct: 184 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|323498002|ref|ZP_08103011.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326] gi|323317047|gb|EGA70049.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326] Length = 247 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 88/243 (36%), Positives = 133/243 (54%), Gaps = 17/243 (6%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ PEA+ Sbjct: 11 RIIVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RQIQPEAVL 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118 +HGITDEFL DKP + + EF +F +AHNA FD GF++ E + Sbjct: 70 VHGITDEFLVDKPEYQDVHQEFLEFIKGAE--LVAHNAPFDTGFMDYEFEMLNAQIGKTE 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAI 236 + + F ++ E R R + +EL+ H + + K + + Sbjct: 188 TSLQFNPGASDSDAVGGE---SIKRVASGRKALKVIRASADELEAHQSRLDIVEKSGSCL 244 Query: 237 WDR 239 W + Sbjct: 245 WRQ 247 >gi|237807686|ref|YP_002892126.1| DNA polymerase III, epsilon subunit [Tolumonas auensis DSM 9187] gi|237499947|gb|ACQ92540.1| DNA polymerase III, epsilon subunit [Tolumonas auensis DSM 9187] Length = 249 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 119/247 (48%), Gaps = 16/247 (6%) Query: 5 NKM---RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 N M R ++ D ETTG++ RIIEIG VE+++ T + V++ P+ R Sbjct: 2 NPMQTNRYVILDTETTGMNQSGGPVYIGHRIIEIGCVEVINRRLTGNHYHVYIKPD-RLV 60 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+++HGITD FL DKP F++I EF DF + + Sbjct: 61 DEEAIRVHGITDAFLADKPPFAAIAQEFRDFIRGAELVIHNASFDVGFIDHEFNKLGWTE 120 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D R+ D+L++AR + P RN L++LC R+GI SHR+ HGALLD+ +L+DVY+ M Sbjct: 121 RVKDICRVTDSLALARGQFPGKRNSLDALCTRFGIDNSHRTLHGALLDAEILADVYLLMT 180 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGKN 234 Q + + + +++R+ + +EL H+K + + K Sbjct: 181 G--GQTRLELHNTVNDNNSASSASAQQLKMIQRNGSLKVLSASADELAAHEKRLDLVAKK 238 Query: 235 ---AIWD 238 +W Sbjct: 239 GGCCLWR 245 >gi|292487330|ref|YP_003530202.1| DNA polymerase III subunit epsilon [Erwinia amylovora CFBP1430] gi|292898576|ref|YP_003537945.1| DNA polymerase III subunit epsilon [Erwinia amylovora ATCC 49946] gi|291198424|emb|CBJ45532.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC 49946] gi|291552749|emb|CBA19794.1| DNA polymerase III epsilon subunit [Erwinia amylovora CFBP1430] gi|312171436|emb|CBX79694.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC BAA-2158] Length = 249 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 136/249 (54%), Gaps = 17/249 (6%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T F V+L P+ R Sbjct: 1 MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLI 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI DEFL DKP+F+ I +F + N + HNA FD+GF++ E ++ + Sbjct: 60 DPEAFGVHGIADEFLLDKPTFAQIADDFLAYINGAE--LVIHNASFDIGFMDYEFAKLQR 117 Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +I D+L++AR+ P RN L++LC RY I S R+ HGALLDS +L++V++ Sbjct: 118 GIAKTETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M Q + F +R +++ +T+ I+ R +++EL H+ + + Sbjct: 178 TMTG--GQTSLAFSMEGEREKQQDGETIQRIAR-PASGLRVVRASEQELMAHEARLDLVE 234 Query: 233 KN---AIWD 238 K +W Sbjct: 235 KKGGSCLWR 243 >gi|218557151|ref|YP_002390064.1| DNA polymerase III subunit epsilon [Escherichia coli S88] gi|218688085|ref|YP_002396297.1| DNA polymerase III subunit epsilon [Escherichia coli ED1a] gi|218698838|ref|YP_002406467.1| DNA polymerase III subunit epsilon [Escherichia coli IAI39] gi|218703464|ref|YP_002410983.1| DNA polymerase III subunit epsilon [Escherichia coli UMN026] gi|293403294|ref|ZP_06647385.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412] gi|293408304|ref|ZP_06652143.1| DNA polymerase III [Escherichia coli B354] gi|298378908|ref|ZP_06988789.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302] gi|218363920|emb|CAR01585.1| DNA polymerase III epsilon subunit [Escherichia coli S88] gi|218368824|emb|CAR16572.1| DNA polymerase III epsilon subunit [Escherichia coli IAI39] gi|218425649|emb|CAR06436.1| DNA polymerase III epsilon subunit [Escherichia coli ED1a] gi|218430561|emb|CAR11427.1| DNA polymerase III epsilon subunit [Escherichia coli UMN026] gi|221361649|emb|CAX20320.1| DNA polymerase III, epsilon subunit [Escherichia coli] gi|291429147|gb|EFF02167.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412] gi|291471482|gb|EFF13965.1| DNA polymerase III [Escherichia coli B354] gi|294493054|gb|ADE91810.1| DNA polymerase III, epsilon subunit [Escherichia coli IHE3034] gi|298280021|gb|EFI21525.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302] gi|323948751|gb|EGB44651.1| DNA polymerase III [Escherichia coli H252] gi|323958799|gb|EGB54498.1| DNA polymerase III [Escherichia coli H263] Length = 243 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ +T + + K T EEL H+ + + K + Sbjct: 184 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|113868435|ref|YP_726924.1| DNA polymerase III subunit epsilon [Ralstonia eutropha H16] gi|113527211|emb|CAJ93556.1| DNA polymerase III epsilon subunit [Ralstonia eutropha H16] Length = 246 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 110/236 (46%), Gaps = 11/236 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL + DR+IEIG VEL++ T R ++ P R A+ +HGI Sbjct: 4 MRQIVLDTETTGLSAATGDRLIEIGCVELMNRRLTGRHLHFYVNPE-RDIDEGAIAVHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + ++ +F + + +L + +ID Sbjct: 63 TVEFLADKPRFAEVVNDIREFIQDAELIIHNAPFDLGFLDMEFQLLGLPPFRQHAGNVID 122 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL AR+ P RN L++LC R GI+ +HR+ HGALLD+ LL++VY+ M G + Sbjct: 123 TLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRGQDSLVIDM 182 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237 + L R R T EE H ++ L K +W Sbjct: 183 HDSTAGHGGAVAAAD-----LSRLALPVLRATDEEQQAHLALLKGLDKASGGKTVW 233 >gi|238784821|ref|ZP_04628822.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970] gi|238714237|gb|EEQ06248.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970] Length = 259 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 86/248 (34%), Positives = 132/248 (53%), Gaps = 17/248 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+DEFL DKP+F+ I EF +F I HNA FD+GF++ E + + +D Sbjct: 71 HGISDEFLADKPTFADIAPEFLEFIRGAE--LIIHNAAFDIGFMDHEFRMLQQDIPKTET 128 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +LS+VY+ M G + Sbjct: 129 FCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILSEVYLAMTGGQT 188 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + ++ + + ++EL H+ + + K + Sbjct: 189 SLTFSMEGDQSQNDSSDDIQRITRPAS---GLKIIYAAEDELAAHESRLDLVMKKGGSCL 245 Query: 237 WDRYISSN 244 W + S Sbjct: 246 WRMPLESE 253 >gi|301050549|ref|ZP_07197422.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1] gi|300297757|gb|EFJ54142.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1] Length = 246 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ +T + + K T EEL H+ + + K + Sbjct: 187 SMTFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|281177435|dbj|BAI53765.1| DNA polymerase III epsilon subunit [Escherichia coli SE15] gi|330910061|gb|EGH38571.1| DNA polymerase 3 epsilon subunit [Escherichia coli AA86] Length = 243 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ +T + + K T EEL H+ + + K + Sbjct: 184 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGTCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|254480788|ref|ZP_05094035.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2148] gi|214039371|gb|EEB80031.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2148] Length = 244 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 92/242 (38%), Positives = 133/242 (54%), Gaps = 12/242 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + RIIEIG VEL T + ++ PN R+ A+++HGI Sbjct: 1 MRQIVLDTETTGLEVSQGHRIIEIGCVELDTRRLTGNHYHQYINPN-REIDQGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122 T+EFLKDKPSF +F EF +F + HNA FD+GF+N+E+QR+ D + Sbjct: 60 TNEFLKDKPSFERVFREFLEFVEGSE--LVIHNAPFDLGFLNSEIQRLEPDAPRLEDRCK 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR KHP RN L++LC+RYG+ S R HGALLDS +L+DVY+ M G + + Sbjct: 118 IVDTLVMARGKHPGQRNSLDALCQRYGVDNSQRDLHGALLDSEILADVYLLMTGGQTALQ 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 + + + + R + EEL H+ ++ + G +W Sbjct: 178 LSDNDSGAESGASRSERIIRLDAG-RQALPVIAASTEELAAHEAQLEAISSASGGKVLWK 236 Query: 239 RY 240 Sbjct: 237 EI 238 >gi|329894914|ref|ZP_08270713.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088] gi|328922643|gb|EGG29978.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088] Length = 247 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 123/248 (49%), Gaps = 14/248 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S R+IEIG VEL++ + R F ++ P R+ P A+++HGI Sbjct: 1 MRQIVLDTETTGLETSDGHRVIEIGCVELINRRLSGRHFHQYINPQ-REVDPGAMEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-------ELQRINKDPL 118 ++EFL+DKP FS+I EF +F I HNA FD+GF++ Sbjct: 60 SNEFLQDKPLFSAIADEFLEFIKGAE--LIIHNAPFDIGFLDYELSLESERRAAPMPTVE 117 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +IDTL +ARRKHP RN L++LC RY + S R HGALLDS +L+DVY+ M G Sbjct: 118 SLCGVIDTLVMARRKHPGQRNTLDALCTRYDVDNSSRDLHGALLDSEILADVYLAMTGGQ 177 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---A 235 + + + E EE H+ + L A Sbjct: 178 TALTLQSENREGGEQSNWVTGEIVRVQRAGLSLPVVPANAEESQAHEAYLDLLDNKSDGA 237 Query: 236 IWDRYISS 243 +W R S Sbjct: 238 LWRRLDES 245 >gi|126667360|ref|ZP_01738332.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] gi|126628116|gb|EAZ98741.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] Length = 236 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 128/242 (52%), Gaps = 10/242 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D + RIIEIG VEL++ + T R + V++ P GR+ EA+ +HGI Sbjct: 1 MRQIVLDTETTGIDPNEGHRIIEIGCVELVERTLTGRNYHVYVNP-GREVEAEAVAIHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+EFL DKP F+ + EF++F + + I+D Sbjct: 60 TNEFLADKPLFAVVADEFFEFIRGAELVIHNAAFDVGFMDAEFGRLDGGRKTAEHCGIVD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR++HP +N+LN+LCKRYG+ S+R HGALLD+ +L+DVY+ + G + + Sbjct: 120 TLAIARKRHPGQKNNLNALCKRYGVDNSNRELHGALLDAEILADVYLLLTGGQTALLLDA 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDRYIS 242 + E ++ R+ R + +E H + + + K A +W + + Sbjct: 180 GSGEGAHGDGIRRV-----QAAREALQVIRASADEDLAHREFMAMMEKKAGSTVWSQVLG 234 Query: 243 SN 244 + Sbjct: 235 AE 236 >gi|26246159|ref|NP_752198.1| DNA polymerase III subunit epsilon [Escherichia coli CFT073] gi|91209283|ref|YP_539269.1| DNA polymerase III subunit epsilon [Escherichia coli UTI89] gi|117622497|ref|YP_851410.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1] gi|227884794|ref|ZP_04002599.1| DNA polymerase III subunit epsilon [Escherichia coli 83972] gi|237707792|ref|ZP_04538273.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA] gi|300900029|ref|ZP_07118226.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1] gi|300936085|ref|ZP_07151027.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1] gi|300988192|ref|ZP_07178593.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1] gi|331656205|ref|ZP_08357167.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206] gi|331681596|ref|ZP_08382232.1| DNA polymerase III, epsilon subunit [Escherichia coli H299] gi|26106556|gb|AAN78742.1|AE016755_242 DNA polymerase III, epsilon chain [Escherichia coli CFT073] gi|91070857|gb|ABE05738.1| DNA polymerase III epsilon chain [Escherichia coli UTI89] gi|115511621|gb|ABI99695.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1] gi|226899002|gb|EEH85261.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA] gi|227838235|gb|EEJ48701.1| DNA polymerase III subunit epsilon [Escherichia coli 83972] gi|300356434|gb|EFJ72304.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1] gi|300407506|gb|EFJ91044.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1] gi|300458760|gb|EFK22253.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1] gi|307552062|gb|ADN44837.1| DNA polymerase III, epsilon chain [Escherichia coli ABU 83972] gi|307628303|gb|ADN72607.1| DNA polymerase III subunit epsilon [Escherichia coli UM146] gi|315289701|gb|EFU49094.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 110-3] gi|315292140|gb|EFU51492.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 153-1] gi|315300178|gb|EFU59415.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 16-3] gi|331054453|gb|EGI26462.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206] gi|331081170|gb|EGI52332.1| DNA polymerase III, epsilon subunit [Escherichia coli H299] Length = 246 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ +T + + K T EEL H+ + + K + Sbjct: 187 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|254245771|ref|ZP_04939092.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|124870547|gb|EAY62263.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] Length = 305 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 9/243 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 62 MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 120 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + + DF + + +ID Sbjct: 121 TTEFLSDKPKFAEVAHQILDFVKDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVID 180 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 181 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 240 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYI 241 + +++ L +++EL H + L K+ +W + Sbjct: 241 LDDAGADGSAANGKRVSLAALDLAVVAA---SEDELAAHQAQLDELDKSVKGTCVWRQPA 297 Query: 242 SSN 244 ++ Sbjct: 298 DTD 300 >gi|226945027|ref|YP_002800100.1| DNA polymerase III subunit epsilon [Azotobacter vinelandii DJ] gi|226719954|gb|ACO79125.1| DNA polymerase III, epsilon subunit [Azotobacter vinelandii DJ] Length = 244 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 119/246 (48%), Gaps = 10/246 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ + RIIEIG VEL T R F V+L P+ R A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTEGHRIIEIGCVELQGRRLTGRHFHVYLQPD-RTVDEGAVAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRI 123 TD+FL DKP F+ I EF++F A + F + Q D + Sbjct: 60 TDDFLADKPRFADIAEEFFEFIKGAQLIIHNAAFDIGFIEDEFSRLGQTERADVNAHCTV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR +HP RN L++LCKRY + S+R HGALLD+ +L+DV++ M Q + Sbjct: 120 LDTLLMARERHPGQRNSLDALCKRYDVDNSNRDLHGALLDAEILADVWLAMTG--GQTHL 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 + + +R + R ++EL H + + + K +W + Sbjct: 178 SLSGEGSENGGRAQASAIRRLSPERQRTRVIRAGEQELAAHAERLAAIEKAAGAPPLWLQ 237 Query: 240 YISSNQ 245 + Q Sbjct: 238 MEQAQQ 243 >gi|170732605|ref|YP_001764552.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3] gi|169815847|gb|ACA90430.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia MC0-3] Length = 244 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 9/243 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + + DF + + +ID Sbjct: 60 TTEFLSDKPKFAEVAHQILDFVKDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYI 241 + +++ L +++EL H + L K+ +W + Sbjct: 180 LDDAGADGSAANGKRVSLAALDLAVVAA---SEDELAAHQAQLDELDKSVKGTCVWRQPA 236 Query: 242 SSN 244 ++ Sbjct: 237 DTD 239 >gi|110804261|ref|YP_687782.1| DNA polymerase III subunit epsilon [Shigella flexneri 5 str. 8401] gi|110613809|gb|ABF02476.1| DNA polymerase III, epsilon subunit [Shigella flexneri 5 str. 8401] Length = 246 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 129/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L +AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLVVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ + + + K T EEL H+ + + K + Sbjct: 187 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|110640430|ref|YP_668158.1| DNA polymerase III subunit epsilon [Escherichia coli 536] gi|300990975|ref|ZP_07179425.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1] gi|306813365|ref|ZP_07447558.1| DNA polymerase III subunit epsilon [Escherichia coli NC101] gi|110342022|gb|ABG68259.1| DNA polymerase III, epsilon chain [Escherichia coli 536] gi|300305641|gb|EFJ60161.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1] gi|305854128|gb|EFM54567.1| DNA polymerase III subunit epsilon [Escherichia coli NC101] gi|324009120|gb|EGB78339.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 57-2] gi|324011829|gb|EGB81048.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 60-1] Length = 246 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNATFDIGFMDYEFSLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ +T + + K T EEL H+ + + K + Sbjct: 187 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|215485371|ref|YP_002327802.1| DNA polymerase III subunit epsilon [Escherichia coli O127:H6 str. E2348/69] gi|312964723|ref|ZP_07778974.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75] gi|215263443|emb|CAS07763.1| DNA polymerase III, epsilon subunit [Escherichia coli O127:H6 str. E2348/69] gi|312290744|gb|EFR18622.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75] Length = 243 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNATFDIGFMDYEFSLLKRDIPKTNT 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ + + + K T EEL H+ + + K + Sbjct: 184 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGTCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|330445182|ref|ZP_08308834.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489373|dbj|GAA03331.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 241 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 95/247 (38%), Positives = 139/247 (56%), Gaps = 17/247 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R IVFD ETTG++ + RIIEIGAVE+++ T TF V++ P+ R Sbjct: 1 MKATNQRIIVFDTETTGMNMSGPHYEGHRIIEIGAVEIINRKLTGNTFHVYIKPD-RPID 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114 PEA+ +HGITDEFL KPS++ I EF DF + +AHNA FD+GF++ E Q + Sbjct: 60 PEAIDVHGITDEFLVGKPSYAEIHQEFIDFIDGAE--LVAHNASFDIGFMDYEFQLMGSD 117 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 K D ++ DTL +A+R P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 118 LKKTEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLM 177 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 M G + + + D + K + +R +EL H++ + +GK Sbjct: 178 MTGGQTSLKLSSDSEGDSDTEFAIKRLTG----ERKGLKVILAAADELTAHEERLDLIGK 233 Query: 234 NA--IWD 238 A +W Sbjct: 234 KADVLWR 240 >gi|331645384|ref|ZP_08346488.1| DNA polymerase III, epsilon subunit [Escherichia coli M605] gi|331045546|gb|EGI17672.1| DNA polymerase III, epsilon subunit [Escherichia coli M605] Length = 246 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ +T + + K T EEL H+ + + K + Sbjct: 187 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGTCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|333008996|gb|EGK28455.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-218] Length = 243 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAVFDIGFMDYEFSLLKRDIPKTNT 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ + + + K T EEL H+ + + K + Sbjct: 184 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|323975918|gb|EGB71013.1| DNA polymerase III [Escherichia coli TW10509] Length = 243 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF ++ + HNA FD+GF++ E +R Sbjct: 66 HGIADEFLLDKPTFAEVADEFMNYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ +T + + K T EEL H+ + + K + Sbjct: 184 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|88857806|ref|ZP_01132448.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Pseudoalteromonas tunicata D2] gi|88819423|gb|EAR29236.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Pseudoalteromonas tunicata D2] Length = 252 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 89/237 (37%), Positives = 132/237 (55%), Gaps = 12/237 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG+D K RIIEIG VEL++ T F V++ P R EA+ +HGIT Sbjct: 19 RQIVLDTETTGIDPKLGHRIIEIGCVELINRRFTGNNFHVYINPE-RDIEDEAIDVHGIT 77 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSRI 123 ++FL+DKP F I EF+D+ + HNA FDVGF+++E QR+ ++ Sbjct: 78 NQFLRDKPKFHHIAQEFFDYIQGAE--LVIHNAAFDVGFMDSEFQRLRTGYPKTAQFCQV 135 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR HP +N+L++LC+RY I R+ HGALLDS +LSDVY+ M G +N Sbjct: 136 LDTLKMARELHPGQKNNLDALCRRYNIDNGKRTMHGALLDSEILSDVYLAMTGGQVSLNL 195 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIW 237 +T + +++ + + S R T +E H + + + K +W Sbjct: 196 NTQTVGEENAQKQGEIIRLNS--DRAPLNIVYATADENQAHIERLALVEKKSSQCLW 250 >gi|170683943|ref|YP_001742338.1| DNA polymerase III subunit epsilon [Escherichia coli SMS-3-5] gi|331651120|ref|ZP_08352145.1| DNA polymerase III, epsilon subunit [Escherichia coli M718] gi|331671744|ref|ZP_08372540.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280] gi|170521661|gb|ACB19839.1| DNA polymerase III, epsilon subunit [Escherichia coli SMS-3-5] gi|281599565|gb|ADA72549.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2002017] gi|324111223|gb|EGC05206.1| DNA polymerase III [Escherichia fergusonii B253] gi|325496141|gb|EGC94000.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ECD227] gi|331050861|gb|EGI22913.1| DNA polymerase III, epsilon subunit [Escherichia coli M718] gi|331070733|gb|EGI42092.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280] Length = 246 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ + + + K T EEL H+ + + K + Sbjct: 187 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|167648966|ref|YP_001686629.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31] gi|167351396|gb|ABZ74131.1| DNA polymerase III, epsilon subunit [Caulobacter sp. K31] Length = 238 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 88/235 (37%), Positives = 135/235 (57%), Gaps = 9/235 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTG D K DR++EIG +E++D+ T R+F + P R EA K+HG++ Sbjct: 3 REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEYCDP-LRDMPAEAQKVHGLS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 EFL KP F I F +F + + IAHNA FD F+N EL++ N+ PL SR +DT Sbjct: 62 IEFLTGKPKFHEIADAFLEFVGD--SPVIAHNAAFDRSFVNFELEKCNRGPLPESRWVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LCKR+ I++ R KHGAL+D+HLL++VY++ + GG + Sbjct: 120 LAMAKKRFPGMYNSLDALCKRFKISLDSRDKHGALIDAHLLAEVYLE-LQGGKERALELT 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWDRY 240 + S R +PL R T+EE H + + A+W ++ Sbjct: 179 QVVAVNAVSAARAG---SYGARPRPLPPRSTEEERQLHAAFVQKNFKDKAVWIQF 230 >gi|30061767|ref|NP_835938.1| DNA polymerase III subunit epsilon [Shigella flexneri 2a str. 2457T] gi|56479626|ref|NP_706156.2| DNA polymerase III subunit epsilon [Shigella flexneri 2a str. 301] gi|218547665|ref|YP_002381456.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ATCC 35469] gi|30040009|gb|AAP15743.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str. 2457T] gi|56383177|gb|AAN41863.2| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str. 301] gi|218355206|emb|CAQ87813.1| DNA polymerase III epsilon subunit [Escherichia fergusonii ATCC 35469] gi|313646728|gb|EFS11187.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str. 2457T] gi|332754119|gb|EGJ84489.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2747-71] gi|332761998|gb|EGJ92270.1| DNA polymerase III, epsilon subunit [Shigella flexneri 4343-70] gi|332764639|gb|EGJ94869.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-671] gi|332768614|gb|EGJ98795.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2930-71] gi|333009688|gb|EGK29138.1| DNA polymerase III, epsilon subunit [Shigella flexneri VA-6] gi|333010755|gb|EGK30181.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-272] gi|333021254|gb|EGK40507.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-227] gi|333022178|gb|EGK41418.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-304] Length = 243 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ + + + K T EEL H+ + + K + Sbjct: 184 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|301021445|ref|ZP_07185469.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1] gi|300398081|gb|EFJ81619.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1] Length = 246 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++ARR P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKVTDSLAVARRMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILADVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ +T + + K T EEL H+ + + K + Sbjct: 187 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|58696733|ref|ZP_00372277.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila simulans] gi|58698126|ref|ZP_00373049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|225629990|ref|YP_002726781.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi] gi|58535372|gb|EAL59448.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58537085|gb|EAL60207.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila simulans] gi|225591971|gb|ACN94990.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi] Length = 231 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 94/240 (39%), Positives = 143/240 (59%), Gaps = 11/240 (4%) Query: 4 KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 ++K+R++V D ETTGLD++ RIIEIG VEL++ T + F +L P R + K+ Sbjct: 2 ESKLRELVLDTETTGLDTESGHRIIEIGCVELINRIPTGKVFHRYLNPE-RDIPYHSFKI 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI++EFL+DKP FS + EF DF N + HNA+FDV F+N EL ++N + R Sbjct: 61 HGISEEFLEDKPLFSDVALEFLDFI--SNDILVIHNAEFDVKFLNMELSKLNAGLISSDR 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+K S LN+LCKR+ I++ +R HGAL+D+ LL+ VY+++ G Sbjct: 119 VLDTLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTFL 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 F + N+D + V N++ P EE+DEH K + + N +W++YI Sbjct: 179 FDNECNQDSNSTFVQHKVRNLT------PREHSPNSEEIDEHKKLLDKIN-NTLWNKYIE 231 >gi|117619304|ref|YP_856106.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560711|gb|ABK37659.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 244 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 83/241 (34%), Positives = 124/241 (51%), Gaps = 13/241 (5%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+I+ D ETTG+++ RIIEIG VE+++ T F V++ P+ R PEA++ Sbjct: 8 RQIILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTGNHFHVYIKPD-RLVDPEAIQ 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGITDEFL+DKPSFS I EF +F +N D Sbjct: 67 VHGITDEFLRDKPSFSQIADEFIEFIRGAELIAHNAPFDVSFMDYEFGKLGLNFKTADIC 126 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 I DTL++AR P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G +++ Sbjct: 127 GITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTKL 186 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 N +++E+ + + T R R + E H+ + + K +W Sbjct: 187 NLATESSEN---ESNQDTSIRRLESNRPPLKVIRASAEIEAVHEARLDLVQKKGGACLWR 243 Query: 239 R 239 + Sbjct: 244 Q 244 >gi|119898345|ref|YP_933558.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] gi|119670758|emb|CAL94671.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] Length = 239 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 81/236 (34%), Positives = 117/236 (49%), Gaps = 12/236 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR+IEIG VEL++ S T R F V++ P+ R EA+ +HGI Sbjct: 1 MRQIVLDTETTGLDWRTGDRVIEIGCVELVNRSLTGRHFHVYINPD-RGIDAEAVAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+EFL DKP F+ I F DF + N L K + + +ID Sbjct: 60 TEEFLADKPRFAGIVEAFEDFVRDAELVIHNANFDVGFLNCELGLLGRPKLDVLCAGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +A+ ++P + L++LC RY I HR+ HGALLD+ LL++VY+ M G + Sbjct: 120 TLRMAKEQNPGKKASLDALCDRYEIDNGHRTLHGALLDAELLAEVYLAMTRGQESLMIAL 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 + + V R R T+ E + H + + K +W Sbjct: 180 DEPAPGQVETDGLPVM------RVGVKVVRATEAECEAHAANLADIAKANKGLCLW 229 >gi|238759160|ref|ZP_04620328.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236] gi|238702576|gb|EEP95125.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236] Length = 259 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 133/249 (53%), Gaps = 17/249 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+DEFL DKPSF+ I EF +F + HNA FD+GF++ E + + +D Sbjct: 71 HGISDEFLADKPSFADITPEFLEFIRGAE--LVIHNAAFDIGFMDYEFRMLQQDIPKTET 128 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 ++F + ++ + E ++EL H+ + + K + Sbjct: 189 SLSFSMEGDQSQNDSSEDIQRITRPAS---ALKIIYAAEDELLAHESRLDLVMKKGGSCL 245 Query: 237 WDRYISSNQ 245 W + S Sbjct: 246 WRMPLESED 254 >gi|325277453|ref|ZP_08143061.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51] gi|324097411|gb|EGB95649.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51] Length = 252 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 78/238 (32%), Positives = 118/238 (49%), Gaps = 4/238 (1%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ + RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDKRYVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDP 117 + +HGITD FL KP F+ + EF++F A + F Q+ D Sbjct: 60 INVHGITDAFLVGKPRFADVADEFFEFIQGATLVIHNAAFDVGFINNEFALLGQQHRADV 119 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 ++DTL +AR +HP RN L++LCKRY I S R HGALLDS LL+DVY+ M G Sbjct: 120 SQYCTVLDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGG 179 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + ++ + + + R +EL+ H + + + K+A Sbjct: 180 QTSLSLAGHGADAEGDGQAGGGSEIRRITGRAPGRVIMANAQELEAHAERLAAIAKSA 237 >gi|331661586|ref|ZP_08362509.1| DNA polymerase III, epsilon subunit [Escherichia coli TA143] gi|284919985|emb|CBG33040.1| DNA polymerase III epsilon subunit [Escherichia coli 042] gi|331060008|gb|EGI31972.1| DNA polymerase III, epsilon subunit [Escherichia coli TA143] Length = 246 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 129/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPE-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF ++ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPTFAEVADEFMNYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ + + + K T EEL H+ + + K + Sbjct: 187 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|195938587|ref|ZP_03083969.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. EC4024] gi|217324145|ref|ZP_03440229.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. TW14588] gi|217320366|gb|EEC28790.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. TW14588] gi|320638235|gb|EFX07963.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. G5101] gi|320643619|gb|EFX12763.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str. 493-89] gi|320654630|gb|EFX22631.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660198|gb|EFX27708.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str. USDA 5905] Length = 246 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ + + + K T EEL H+ + + K + Sbjct: 187 SMAFAM---EGETQQQQGEATIQRLVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|15799891|ref|NP_285903.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 EDL933] gi|15829465|ref|NP_308238.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. Sakai] gi|82775601|ref|YP_401948.1| DNA polymerase III subunit epsilon [Shigella dysenteriae Sd197] gi|168750163|ref|ZP_02775185.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4113] gi|168757208|ref|ZP_02782215.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4401] gi|168763423|ref|ZP_02788430.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4501] gi|168776181|ref|ZP_02801188.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4196] gi|168782940|ref|ZP_02807947.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4076] gi|168789658|ref|ZP_02814665.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC869] gi|168800383|ref|ZP_02825390.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC508] gi|189403362|ref|ZP_02794985.2| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4486] gi|208809432|ref|ZP_03251769.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4206] gi|208813334|ref|ZP_03254663.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4045] gi|208818379|ref|ZP_03258699.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4042] gi|209400894|ref|YP_002268818.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4115] gi|254791342|ref|YP_003076179.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. TW14359] gi|261223754|ref|ZP_05938035.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261255836|ref|ZP_05948369.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. FRIK966] gi|291281032|ref|YP_003497850.1| DNA polymerase III, epsilon subunit [Escherichia coli O55:H7 str. CB9615] gi|293413470|ref|ZP_06656119.1| DNA polymerase III [Escherichia coli B185] gi|309787110|ref|ZP_07681722.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617] gi|12512943|gb|AAG54511.1|AE005196_9 DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EDL933] gi|13359667|dbj|BAB33634.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. Sakai] gi|81239749|gb|ABB60459.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae Sd197] gi|187768434|gb|EDU32278.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4196] gi|188015573|gb|EDU53695.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4113] gi|188999632|gb|EDU68618.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4076] gi|189355702|gb|EDU74121.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4401] gi|189361034|gb|EDU79453.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4486] gi|189366358|gb|EDU84774.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4501] gi|189370736|gb|EDU89152.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC869] gi|189377309|gb|EDU95725.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC508] gi|208729233|gb|EDZ78834.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4206] gi|208734611|gb|EDZ83298.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4045] gi|208738502|gb|EDZ86184.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4042] gi|209162294|gb|ACI39727.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4115] gi|209745474|gb|ACI71044.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|209745476|gb|ACI71045.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|209745478|gb|ACI71046.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|209745480|gb|ACI71047.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|209745482|gb|ACI71048.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|254590742|gb|ACT70103.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. TW14359] gi|290760905|gb|ADD54866.1| DNA polymerase III, epsilon subunit [Escherichia coli O55:H7 str. CB9615] gi|291433528|gb|EFF06501.1| DNA polymerase III [Escherichia coli B185] gi|308924688|gb|EFP70183.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617] gi|320190264|gb|EFW64914.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. EC1212] gi|320650355|gb|EFX18832.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str. H 2687] gi|320665449|gb|EFX32511.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. LSU-61] gi|326338809|gb|EGD62628.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. 1044] gi|326342399|gb|EGD66179.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. 1125] Length = 243 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ + + + K T EEL H+ + + K + Sbjct: 184 SMAFAM---EGETQQQQGEATIQRLVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|237746089|ref|ZP_04576569.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes HOxBLS] gi|229377440|gb|EEO27531.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes HOxBLS] Length = 248 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 79/238 (33%), Positives = 114/238 (47%), Gaps = 12/238 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL + DRIIEIG VE+L+ T+ F ++ P R + P+AL +HG+ Sbjct: 1 MRQIVLDTETTGLYANDGDRIIEIGCVEVLNRRVTDHHFHQYINPE-RDSHPDALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I F DF + S I D Sbjct: 60 TTEFLSDKPKFAEIAQAFCDFIKGAELVIHNAPFDVGFLNAELARLNLPPVEELASCITD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L AR P RN L++LC+R+ I +HR+ HGALLD+ LL++VY+ M G + Sbjct: 120 SLLKARDMFPGRRNSLDALCERFEIDNTHRTLHGALLDAELLAEVYLAMTRGQETLEI-- 177 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-----AIWD 238 E ++ L + L T+EEL +H++ + + K +W Sbjct: 178 ---EKLTLSAAEEEARKNHPLSSLRILVLAPTEEELQKHEEVLDDIEKGNKGAPCVWR 232 >gi|323495336|ref|ZP_08100414.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546] gi|323310407|gb|EGA63593.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546] Length = 245 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 141/247 (57%), Gaps = 19/247 (7%) Query: 4 KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 N+ R +V D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ P Sbjct: 7 SNQHRIVVLDTETTGMNREGGPHYQDHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQP 65 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-- 115 +A+++HGITDEFL DKP + + +EF +F +AHNA FDVGF++ E ++ Sbjct: 66 DAVEVHGITDEFLVDKPDYRDVHAEFLEFIKGAE--LVAHNAPFDVGFMDHEFGMLDPSI 123 Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M Sbjct: 124 GKTVDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLM 183 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233 G + + F + + + K+ R R T +EL+ H + + K Sbjct: 184 TGGQTSLQFNAGNSSEDGGEAIKRVASG-----RKSLKVLRATADELEAHQSRLDIVEKS 238 Query: 234 -NAIWDR 239 + +W + Sbjct: 239 GSCLWRQ 245 >gi|323526835|ref|YP_004228988.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001] gi|323383837|gb|ADX55928.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001] Length = 244 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 79/237 (33%), Positives = 115/237 (48%), Gaps = 10/237 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRIIE+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARTGDRIIEVGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I EF DF + L + IID Sbjct: 60 TTEFLSDKPKFAEIADEFRDFIQGADLIIHNAPFDIGFLDAEFALLGLPPVSTHCGEIID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 + V SL + + EEL H + L K ++W Sbjct: 180 LGESHAGGEAHAPRVALDSLD----LVVIAASDEELAAHQAVLDGLDKAIKGTSVWR 232 >gi|332162776|ref|YP_004299353.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606882|emb|CBY28380.1| DNA polymerase III epsilon subunit [Yersinia enterocolitica subsp. palearctica Y11] gi|325667006|gb|ADZ43650.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861137|emb|CBX71400.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica W22703] Length = 260 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 133/249 (53%), Gaps = 17/249 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+DEFL DKP+F+ I EF +F + HNA FD+GF++ E + + +D Sbjct: 66 HGISDEFLADKPTFADIAPEFIEFIRGAE--LVIHNAAFDIGFMDYEFRMLQQDIPKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCTITDSLLLARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 ++F + ++ + + ++EL H+ + + K + Sbjct: 184 SLSFSMEGDQSQNNSSDDIQRITRPAS---GLKIIYAAEDELAAHESRLDLVMKKGGSCL 240 Query: 237 WDRYISSNQ 245 W + + Sbjct: 241 WRMPLETED 249 >gi|317490808|ref|ZP_07949244.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920355|gb|EFV41678.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] Length = 244 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 89/242 (36%), Positives = 136/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+D+FL DKP+F+ I EF +F + HNA FD+GF++ E +++N+D Sbjct: 66 HGISDDFLLDKPTFADIADEFLEFIRGAE--LVIHNAPFDIGFMDYEFRKLNRDIPKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +ARR P RN L++LC RY I + R+ HGALLDS +L+DVY+ M G + Sbjct: 124 FCKITDSLVMARRLFPGKRNSLDALCNRYEIDNTKRTLHGALLDSQILADVYLTMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F ++ ++ + + K R + EEL EH+ + + K + Sbjct: 184 SLTFSMESEGEKPRPTGEVQKI---VRKMQALKVVRASAEELAEHEHRLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|16128202|ref|NP_414751.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. MG1655] gi|89107090|ref|AP_000870.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. W3110] gi|170079846|ref|YP_001729166.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. DH10B] gi|238899608|ref|YP_002925404.1| DNA polymerase III epsilon subunit [Escherichia coli BW2952] gi|256024146|ref|ZP_05438011.1| DNA polymerase III subunit epsilon [Escherichia sp. 4_1_40B] gi|118805|sp|P03007|DPO3E_ECOLI RecName: Full=DNA polymerase III subunit epsilon gi|42063|emb|CAA27661.1| unnamed protein product [Escherichia coli] gi|147679|gb|AAA24564.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|1786409|gb|AAC73320.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. MG1655] gi|4902952|dbj|BAA77886.1| DNA polymerase III epsilon subunit [Escherichia coli str. K12 substr. W3110] gi|169887681|gb|ACB01388.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. DH10B] gi|238860830|gb|ACR62828.1| DNA polymerase III epsilon subunit [Escherichia coli BW2952] gi|315134900|dbj|BAJ42059.1| DNA polymerase III subunit epsilon [Escherichia coli DH1] gi|315616887|gb|EFU97504.1| DNA polymerase III, epsilon subunit [Escherichia coli 3431] gi|323943406|gb|EGB39558.1| DNA polymerase III [Escherichia coli E482] gi|332341543|gb|AEE54877.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli UMNK88] Length = 243 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ + + + K T EE+ H+ + + K + Sbjct: 184 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEEIAAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|327254934|gb|EGE66544.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_7v] Length = 243 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF ++ + HNA FD+GF++ E +R Sbjct: 66 HGIADEFLLDKPTFAEVADEFMNYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ + + + K T EEL H+ + + K + Sbjct: 184 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|323963754|gb|EGB59256.1| DNA polymerase III [Escherichia coli M863] Length = 246 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF ++ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPTFAEVADEFMNYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ + + + K T EEL H+ + + K + Sbjct: 187 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|170768002|ref|ZP_02902455.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627] gi|170123490|gb|EDS92421.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627] Length = 243 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 132/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 66 HGIADEFLLDKPTFADVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTG--G 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 Q + F + ++ + T+ I + + K T EEL+ H+ + + K + Sbjct: 182 QTSMAFAMEGETQQQQGEVTIQRI-VRQASKLRIVFATDEELEAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|259909387|ref|YP_002649743.1| DNA polymerase III subunit epsilon [Erwinia pyrifoliae Ep1/96] gi|224965009|emb|CAX56539.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae Ep1/96] gi|283479460|emb|CAY75376.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae DSM 12163] Length = 252 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 132/249 (53%), Gaps = 17/249 (6%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T F V+L P+ R Sbjct: 1 MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLI 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI DEFL DKP+F+ I +F + N + HNA FD+GF++ E ++ + Sbjct: 60 DPEAFGVHGIADEFLLDKPTFAQIADDFLAYINGAE--LVIHNASFDIGFMDYEFAKLQR 117 Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +I D+L++AR+ P RN L++LC RY I S R+ HGALLDS +L++V++ Sbjct: 118 GIAKTETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + + F E K++ + R +++EL H+ + + Sbjct: 178 TMTGGQTSLAFSM---EGEREKQQGGETIHRIARPSSGLRVVRASEQELMAHEARLDLVE 234 Query: 233 KN---AIWD 238 K +W Sbjct: 235 KKGGSCLWR 243 >gi|68172041|ref|ZP_00545326.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Ehrlichia chaffeensis str. Sapulpa] gi|67998534|gb|EAM85303.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Ehrlichia chaffeensis str. Sapulpa] Length = 239 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 90/241 (37%), Positives = 133/241 (55%), Gaps = 9/241 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M +R++V D ETTGLD DR+IEIG VEL+D T + F ++ P R A Sbjct: 1 MSYYKGVREVVLDTETTGLDPDGGDRVIEIGCVELIDRVFTGKVFHEYINPE-RDIPYYA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGIT + LKDKP FS I +F +F N + HNA FD+ FI EL RINK Sbjct: 60 TKIHGITIDMLKDKPKFSEIADKFLEFI--DNGILVIHNAGFDIKFIKMELDRINKSYNS 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +++DTL +AR+K P + L++LC+R+ I++ R HGALLD+ LL VY+++M G Sbjct: 118 DFQVVDTLVLARKKFPGVSSTLDALCRRFNISLQDRKFHGALLDATLLGKVYVQLMG-GL 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 Q + F N + ++ P +++EE+ +H ++ + KN IW+ Sbjct: 177 QRSLEFSYNNNVSSASNIDKRCENLCIE---PRIYEVSEEEIKKHKMLLEKI-KNPIWNN 232 Query: 240 Y 240 Sbjct: 233 I 233 >gi|310766705|gb|ADP11655.1| DNA polymerase III subunit epsilon [Erwinia sp. Ejp617] Length = 252 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 132/249 (53%), Gaps = 17/249 (6%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T F V+L P+ R Sbjct: 1 MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLI 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI DEFL DKP+F+ I +F + N + HNA FD+GF++ E ++ + Sbjct: 60 DPEAFGVHGIADEFLLDKPTFAQIADDFLAYINGAE--LVIHNASFDIGFMDYEFAKLQR 117 Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +I D+L++AR+ P RN L++LC RY I S R+ HGALLDS +L++V++ Sbjct: 118 GIAKTETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + + F E K++ + R +++EL H+ + + Sbjct: 178 TMTGGQTSLAFSM---EGEREKQQDGETIHRIARPSSGLRVVRASEQELMAHEARLDLVE 234 Query: 233 KN---AIWD 238 K +W Sbjct: 235 KKGGSCLWR 243 >gi|300949353|ref|ZP_07163365.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1] gi|300958303|ref|ZP_07170446.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1] gi|301029642|ref|ZP_07192704.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1] gi|301645470|ref|ZP_07245407.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1] gi|307136810|ref|ZP_07496166.1| DNA polymerase III subunit epsilon [Escherichia coli H736] gi|331640665|ref|ZP_08341812.1| DNA polymerase III, epsilon subunit [Escherichia coli H736] gi|1552785|gb|AAB08637.1| DNA polymerase III epsilon chain [Escherichia coli] gi|260450588|gb|ACX41010.1| DNA polymerase III, epsilon subunit [Escherichia coli DH1] gi|299877469|gb|EFI85680.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1] gi|300315009|gb|EFJ64793.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1] gi|300451236|gb|EFK14856.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1] gi|301076259|gb|EFK91065.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1] gi|331040039|gb|EGI12247.1| DNA polymerase III, epsilon subunit [Escherichia coli H736] Length = 246 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ + + + K T EE+ H+ + + K + Sbjct: 187 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEEIAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|238794443|ref|ZP_04638053.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909] gi|238726238|gb|EEQ17782.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909] Length = 259 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 134/249 (53%), Gaps = 17/249 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+DEFL DKP+F+ I EF DF + HNA FD+GF++ E + + +D Sbjct: 71 HGISDEFLADKPTFADITPEFLDFIRGAE--LVIHNAAFDIGFMDYEFRMLQQDIPKTET 128 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 ++F + ++ + E + ++EL H+ + + K + Sbjct: 189 SLSFSMEGDQSQNDSSEDIQRITRPASE---LKIIYAAEDELLAHESRLDLVMKKGGSCL 245 Query: 237 WDRYISSNQ 245 W + S Sbjct: 246 WRMPLESED 254 >gi|188494951|ref|ZP_03002221.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638] gi|194438247|ref|ZP_03070339.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1] gi|254160329|ref|YP_003043437.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606] gi|312970313|ref|ZP_07784494.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70] gi|188490150|gb|EDU65253.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638] gi|194422911|gb|EDX38906.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1] gi|242376045|emb|CAQ30730.1| DNA polymerase III, epsilon subunit, subunit of DNA polymerase III, core enzyme and DNA polymerase III, holoenzyme [Escherichia coli BL21(DE3)] gi|253972230|gb|ACT37901.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606] gi|253976439|gb|ACT42109.1| DNA polymerase III subunit epsilon [Escherichia coli BL21(DE3)] gi|309700417|emb|CBI99706.1| DNA polymerase III epsilon subunit [Escherichia coli ETEC H10407] gi|310336962|gb|EFQ02100.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70] Length = 243 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ + + + K T +EL H+ + + K + Sbjct: 184 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDDELAAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|170021437|ref|YP_001726391.1| DNA polymerase III subunit epsilon [Escherichia coli ATCC 8739] gi|253774763|ref|YP_003037594.1| DNA polymerase III subunit epsilon [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|297518674|ref|ZP_06937060.1| DNA polymerase III subunit epsilon [Escherichia coli OP50] gi|300905642|ref|ZP_07123388.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1] gi|300919145|ref|ZP_07135678.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1] gi|300927906|ref|ZP_07143466.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1] gi|301305771|ref|ZP_07211857.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1] gi|169756365|gb|ACA79064.1| DNA polymerase III, epsilon subunit [Escherichia coli ATCC 8739] gi|253325807|gb|ACT30409.1| DNA polymerase III, epsilon subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|300402534|gb|EFJ86072.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1] gi|300413743|gb|EFJ97053.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1] gi|300464061|gb|EFK27554.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1] gi|300838946|gb|EFK66706.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1] gi|315253528|gb|EFU33496.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 85-1] gi|323963578|gb|EGB59135.1| DNA polymerase III [Escherichia coli H489] gi|323972507|gb|EGB67713.1| DNA polymerase III [Escherichia coli TA007] Length = 246 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ + + + K T +EL H+ + + K + Sbjct: 187 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDDELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|238755084|ref|ZP_04616431.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473] gi|238706644|gb|EEP99014.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473] Length = 254 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+DEFL DKP+F+ I EF +F + HNA FD+GF+ E + + + + Sbjct: 66 HGISDEFLLDKPTFADIAPEFIEFIRGAE--LVIHNATFDIGFMYYEFRMLQQAIPNTDT 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +LS+VY+ M G + Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILSEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 ++F + ++++ + EELD H + + + K + Sbjct: 184 SLSFSMEGDQNQSDSAADIQRI---VRPTSGLTIIYANDEELDAHHQRLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|157962223|ref|YP_001502257.1| DNA polymerase III subunit epsilon [Shewanella pealeana ATCC 700345] gi|157847223|gb|ABV87722.1| DNA polymerase III, epsilon subunit [Shewanella pealeana ATCC 700345] Length = 242 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 16/240 (6%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+I+ D ETTG++ RIIEIG VE+++ T R + ++ P + EA+ Sbjct: 9 RQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVVNRRLTGRHYHEYINPQ-QPIDEEAIA 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDPLDP 120 +HGIT+EF+ DKP F + F +F + N + LQ + D Sbjct: 68 VHGITNEFVADKPKFHEVAQSFIEFIDGAEIVAHNANFDVSFMDHEFSMLQPLGPKTADI 127 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +I+D+L+IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ M G ++ Sbjct: 128 CQILDSLAIAKHLHPGQKNNLDALCKRYGIDNSARDLHGALLDAEILADVYLLMTGGQTK 187 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWD 238 N + ++ + R K + +EL H++ + + K+ +W Sbjct: 188 FNLSSEKAGQEGGGIQRLSA------DRTKLKVIAASADELIRHEERLDLVAKSGQCLWR 241 >gi|331007390|ref|ZP_08330576.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989] gi|330418798|gb|EGG93278.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989] Length = 239 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 129/240 (53%), Gaps = 10/240 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ K RIIEIG VEL + T R + ++ P R+ +A+++HGI Sbjct: 1 MRQIVLDTETTGLEPSKGHRIIEIGCVELENRKLTGRHYHQYIQPE-REIEAQAMEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA--HNAKFDVGFINAELQRINKDPLDPSRI 123 T+E+LK KP+F I EF F + + F + + ++ + Sbjct: 60 TNEYLKGKPTFVQIMDEFMAFVDGAELIIHNAPFDVGFINNELAKYGDKKYQNITHYCGV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +AR+KHP +N+L++LCKRYG+ S R HGALLDS +L+DVY+ M G ++ Sbjct: 120 IDTLVMARQKHPGQKNNLDALCKRYGVDNSQRDLHGALLDSEILADVYLLMTGGQRALSL 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239 ++ED + + ++ + + + EEL +H++ + + K +W + Sbjct: 180 SSASSEDDSGSRQVTGIRRLAEV--PNLPIIQASPEELAQHEQKLAAIDKASQGQCVWLK 237 >gi|161615575|ref|YP_001589540.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161364939|gb|ABX68707.1| hypothetical protein SPAB_03350 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 246 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 129/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP F+ + EF D+ + + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRDAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + R E + + + ++EEL H+ + + K + Sbjct: 187 SMTFAMEGETQRQQGEATIQRI---VRQASRLRVVFASEEELAAHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|329847376|ref|ZP_08262404.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum C19] gi|328842439|gb|EGF92008.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum C19] Length = 229 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 134/232 (57%), Gaps = 8/232 (3%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +IV D ETTG+D K R+IEIG +E+ D T RTF F+ P R+ P+A+++HGI++ Sbjct: 4 EIVLDTETTGIDHRKGHRLIEIGCIEIEDLLPTGRTFHHFVDPE-REIEPDAIRVHGISN 62 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ KP F I E +F ++ AHNA FD GFIN E++R+++ + IDTL Sbjct: 63 EKVRGKPKFGQIADELCEFIGDKRII--AHNAAFDRGFINMEMERLSRVCHPDDQWIDTL 120 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR K P N L++LC+R+ I+++ R HGAL+D+ LL+ VY++++ G + + Sbjct: 121 ELARNKFPGMANSLDALCRRFNISLAERDLHGALIDARLLASVYLELLG-GKERGLDLEM 179 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-LGKNAIWD 238 R E + IS R +PL RIT E+ H+ + L ++W Sbjct: 180 ASARI--EAVQVANPISYGARPRPLAPRITAAEVAAHEAFVAKYLKDKSLWK 229 >gi|323259856|gb|EGA43487.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] Length = 243 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 128/242 (52%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 66 HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + R EE + + + + EEL H+ + + K + Sbjct: 184 SMTFAMEGETQRQQGEETIQRI---VRQASRLRVVFASDEELAAHESRLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|168238647|ref|ZP_02663705.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736138|ref|YP_002113281.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204927010|ref|ZP_03218212.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194711640|gb|ACF90861.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288607|gb|EDY27984.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204323675|gb|EDZ08870.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322614544|gb|EFY11473.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620062|gb|EFY16934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623357|gb|EFY20196.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629345|gb|EFY26124.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632065|gb|EFY28819.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637197|gb|EFY33899.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640310|gb|EFY36970.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645923|gb|EFY42443.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652378|gb|EFY48732.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652582|gb|EFY48932.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660392|gb|EFY56628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664545|gb|EFY60738.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669402|gb|EFY65552.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670948|gb|EFY67081.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678813|gb|EFY74868.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681842|gb|EFY77867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687968|gb|EFY83934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194322|gb|EFZ79517.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197738|gb|EFZ82870.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203466|gb|EFZ88491.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206789|gb|EFZ91742.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213392|gb|EFZ98193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214685|gb|EFZ99436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221462|gb|EGA05878.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226220|gb|EGA10436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229992|gb|EGA14112.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233731|gb|EGA17820.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238575|gb|EGA22633.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244263|gb|EGA28272.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246424|gb|EGA30407.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252193|gb|EGA36046.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258046|gb|EGA41725.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323265129|gb|EGA48628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272692|gb|EGA56099.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 246 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 128/242 (52%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + R EE + + + + EEL H+ + + K + Sbjct: 187 SMTFAMEGETQRQQGEETIQRI---VRQASRLRVVFASDEELAAHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|238790133|ref|ZP_04633910.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC 33641] gi|238721802|gb|EEQ13465.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC 33641] Length = 259 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 134/249 (53%), Gaps = 17/249 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+DEFL DKP+F+ I EF +F + HNA FD+GF++ E + + +D Sbjct: 71 HGISDEFLADKPTFADITPEFLEFIRGAE--LVIHNAAFDIGFMDYEFRMLQQDIPKTET 128 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 ++F + ++ + E + EEL+ H+ + + K + Sbjct: 189 SLSFSMEGDQSQNDSSEDIQRI---IRPASGLKIIYAADEELEAHNSRLDLVMKKGGSCL 245 Query: 237 WDRYISSNQ 245 W + + Sbjct: 246 WRMPLEPEE 254 >gi|315126186|ref|YP_004068189.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913] gi|315014700|gb|ADT68038.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913] Length = 237 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 84/238 (35%), Positives = 132/238 (55%), Gaps = 13/238 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG+D K RIIEIG VEL++ T F V++ P R EA+ +HGIT Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELMNRRLTGNNFHVYINPQ-RSIEEEAIDVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSRI 123 +EFL+DKP F I EF+D+ + + HNA FD+G ++ E + ++ D + Sbjct: 63 NEFLRDKPLFRDIAQEFFDYIKDAE--LVIHNAPFDIGHMDNEFALLNQGYQNTHDFCGV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR HP +N+L++LC+RY + + R+ HGALLDS +L+DVY+ M Q+ Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDVDNTKRTLHGALLDSEILADVYLAMTG--GQVKL 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 N+D +++K + ++ R + ++ E H + + K +W Sbjct: 179 NLNQNKDDSSEDQKGGIRRLN-SDRAPLVVVAASEAEQSAHQSRLDIVQKEGGHCLWR 235 >gi|73667124|ref|YP_303140.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Ehrlichia canis str. Jake] gi|72394265|gb|AAZ68542.1| DNA polymerase III, epsilon subunit :DNA polymerase 3, epsilon subunit [Ehrlichia canis str. Jake] Length = 239 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 91/239 (38%), Positives = 137/239 (57%), Gaps = 9/239 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M +R++V D ETTGLD DRIIEIG VEL+D T + F ++ P R A Sbjct: 1 MSYYKGVREVVLDTETTGLDPDGGDRIIEIGCVELIDRVFTGKVFHEYINPE-RDIPYYA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGIT + LKDKP FS I +F +F N+ + HNA FD+ FI EL +I KD Sbjct: 60 TKIHGITIDMLKDKPKFSEIADKFLEFV--NNSVLVIHNAGFDIKFIKMELDKIQKDYDS 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +++DTL +AR+K P + L++LC+R+ I++ R HGALLD+ LL VY+++M G Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCRRFNISLQDRKFHGALLDATLLGKVYVQLMG-GL 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 Q + F + + + + N +P F +++EE+ +H ++ + KN IW+ Sbjct: 177 QRSLDFSYSNNII---DTSNINNQCEDVAIEPRFYEVSEEEITQHKMLLEKI-KNPIWN 231 >gi|311694693|gb|ADP97566.1| DNA polymerase 3, epsilon subunit [marine bacterium HP15] Length = 239 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 124/243 (51%), Gaps = 11/243 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D + RIIEIG VEL++ T R + V++ P+ R+ EA+ +HGI Sbjct: 4 MRQIVLDTETTGIDPAEGHRIIEIGCVELMERQLTGRNYHVYINPD-REVEAEAITVHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+EFL DKP F+ I EF++F + + D I+D Sbjct: 63 TNEFLADKPRFAEIADEFFEFIKGAELVIHNAAFDVGFMDSEFARLKPVRKTADHCGIVD 122 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L+IAR +HP +N+L++LCKRYG+ S+R HGALLD+ +L+DVY+ + G + ++ Sbjct: 123 SLAIARARHPGQKNNLDALCKRYGVDNSNRDLHGALLDAEILADVYLLLTGGQTALSLD- 181 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDRYIS 242 R R + E + H + + L K A +W + + Sbjct: 182 ----AGSENGGGNGGIRRLPADRAPLSVVRASSSEAEAHQEFMSLLEKQAGETVWGK-LQ 236 Query: 243 SNQ 245 S + Sbjct: 237 SPE 239 >gi|62178830|ref|YP_215247.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224582105|ref|YP_002635903.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62126463|gb|AAX64166.1| DNA polymerase III, epsilon subunit, 3-5 exonucleolytic proofreading function [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224466632|gb|ACN44462.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713281|gb|EFZ04852.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 246 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 128/242 (52%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + R E + + + T+EEL H+ + + K + Sbjct: 187 SMTFAMEGETQRQQGEATIQRI---VRQASRLRVVFATEEELAAHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|56479129|ref|YP_160718.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum EbN1] gi|56315172|emb|CAI09817.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum EbN1] Length = 239 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 80/236 (33%), Positives = 123/236 (52%), Gaps = 12/236 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR+IEIG VELL+ + T R + V++ P R EA+ +HGI Sbjct: 1 MRQIVLDTETTGLDWRNGDRVIEIGCVELLNRNLTGRHYHVYINPE-RGIDAEAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T++FL DKP+FS+I +EF DF + + K + +ID Sbjct: 60 TEDFLADKPTFSAIAAEFEDFIRDAELIIHNASFDVGFLNHELSRLGRGKLDSLCAGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +A+ ++P + L++LC R+ I + R+ HGALLD+ LL++VY+ M G + Sbjct: 120 TLKMAKEQNPGKKASLDALCDRHQIDNASRTLHGALLDAELLAEVYLAMTRGQESLIMVL 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237 + + L+ R R + EEL EH++ +Q + K +W Sbjct: 180 EEPVPGSAEAGGV------LVDRPPLKVLRASGEELAEHERVLQDIAKGTKGTCLW 229 >gi|89075025|ref|ZP_01161470.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34] gi|89049264|gb|EAR54828.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34] Length = 241 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 141/247 (57%), Gaps = 17/247 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R IVFD ETTG++ + RI+EIGAVE+++ T +TF V++ P+ R Sbjct: 1 MKATNQRIIVFDTETTGMNMTGPHYEGHRIVEIGAVEIINRKLTGKTFHVYIKPD-RPID 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114 PEA+ +HGITDEFL KPS++ I EF DF + +AHNA FD+GF++ E Q + Sbjct: 60 PEAIDVHGITDEFLIGKPSYADIHQEFIDFIDGAE--LVAHNASFDIGFMDYEFQLMGSD 117 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 K D ++ DTL +A+R P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 118 LKKTEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLM 177 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 M G + + D + K + + +R + +EL H++ + +GK Sbjct: 178 MTGGQTSLKLSGDNEGDSEKEFAIKRL----VGERKGLKVICASADELVSHEERLDLIGK 233 Query: 234 NA--IWD 238 A +W Sbjct: 234 KADVLWR 240 >gi|238913716|ref|ZP_04657553.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 246 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 128/242 (52%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPVFADVIDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + R E + + + ++EEL H+ + + K + Sbjct: 187 SMTFAMEGETQRQQGEATIQRI---VRQASRLRVVFASEEELAAHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|167995093|ref|ZP_02576183.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232195|ref|ZP_02657253.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239998|ref|ZP_02664930.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261338|ref|ZP_02683311.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465317|ref|ZP_02699199.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819164|ref|ZP_02831164.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445947|ref|YP_002039498.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449519|ref|YP_002044248.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471875|ref|ZP_03077859.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197248793|ref|YP_002145264.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263319|ref|ZP_03163393.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244203|ref|YP_002214220.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389565|ref|ZP_03216176.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|213419655|ref|ZP_03352721.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428417|ref|ZP_03361167.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646369|ref|ZP_03376422.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852644|ref|ZP_03382176.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289828784|ref|ZP_06546543.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|194404610|gb|ACF64832.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407823|gb|ACF68042.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458239|gb|EDX47078.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195631798|gb|EDX50318.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197212496|gb|ACH49893.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241574|gb|EDY24194.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197938719|gb|ACH76052.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602010|gb|EDZ00556.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205327163|gb|EDZ13927.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333347|gb|EDZ20111.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339912|gb|EDZ26676.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344083|gb|EDZ30847.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349720|gb|EDZ36351.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|312911229|dbj|BAJ35203.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084513|emb|CBY94305.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224918|gb|EFX49979.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128579|gb|ADX16009.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326621964|gb|EGE28309.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626623|gb|EGE32966.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 246 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 128/242 (52%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + R E + + + ++EEL H+ + + K + Sbjct: 187 SMTFAMEGETQRQQGEATIQRI---VRQASRLRVVFASEEELAAHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|16759250|ref|NP_454867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763647|ref|NP_459262.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142975|ref|NP_806317.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414616|ref|YP_151691.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363544|ref|YP_002143181.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205351595|ref|YP_002225396.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855776|ref|YP_002242427.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|60392203|sp|P0A1G9|DPO3E_SALTY RecName: Full=DNA polymerase III subunit epsilon gi|60392204|sp|P0A1H0|DPO3E_SALTI RecName: Full=DNA polymerase III subunit epsilon gi|25299960|pir||AF0534 DNA polymerase III epsilon chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|1172157|gb|AAA86422.1| dnaQ [Salmonella enterica subsp. enterica serovar Typhimurium] gi|1794290|gb|AAC44792.1| DNA polymerase III epsilon chain [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16418764|gb|AAL19221.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501541|emb|CAD08718.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|29138607|gb|AAO70177.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128873|gb|AAV78379.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095021|emb|CAR60567.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205271376|emb|CAR36169.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707579|emb|CAR31853.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245489|emb|CBG23279.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991951|gb|ACY86836.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156885|emb|CBW16361.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332987210|gb|AEF06193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 243 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 128/242 (52%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 66 HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + R E + + + ++EEL H+ + + K + Sbjct: 184 SMTFAMEGETQRQQGEATIQRI---VRQASRLRVVFASEEELAAHESRLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|120599049|ref|YP_963623.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1] gi|146292880|ref|YP_001183304.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32] gi|120559142|gb|ABM25069.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1] gi|145564570|gb|ABP75505.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32] gi|319426198|gb|ADV54272.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200] Length = 242 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 16/246 (6%) Query: 2 IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+IV D ETTG++ RIIEIG VE+++ T R F ++ P G+ Sbjct: 3 IISNASRQIVLDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA+ +HGITDE + ++P F I +F +F + N + Sbjct: 62 DPEAIAVHGITDERVANEPRFHQIAQQFIEFIDGAEIVAHNANFDVSFMDHEFSMLPSKG 121 Query: 116 DPLDPSRIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I + HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ M Sbjct: 122 PKTMDICDILDTLEIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVYLIM 181 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233 G ++ N + ++ +++ + +EL H++ + + K Sbjct: 182 TGGQTKFNLSNEEVGQEAGGIQRFAPNSLN------LKVISASADELAMHEQRLDLVAKS 235 Query: 234 -NAIWD 238 +W Sbjct: 236 GKCLWR 241 >gi|320538891|ref|ZP_08038567.1| DNA polymerase III epsilon subunit [Serratia symbiotica str. Tucson] gi|320031051|gb|EFW13054.1| DNA polymerase III epsilon subunit [Serratia symbiotica str. Tucson] Length = 247 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 131/249 (52%), Gaps = 18/249 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI R+IV D ETTG++ + RIIEIGAVE+++ T R + V++ P+ R Sbjct: 1 MISTTT-RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPD-RLV 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI+DEFL DKP+F I EF DF + HNA FD+GF++ E + + + Sbjct: 59 DPEAYGVHGISDEFLADKPTFDQIADEFLDFIRGGE--LVIHNAAFDIGFMDHEFRLLQQ 116 Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ Sbjct: 117 GIPKTETFCTITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYL 176 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231 M G + + F + + + + + + +EL H+ + + Sbjct: 177 AMTGGQTSMTFQMEGDTQQTNSAQDIQRI---VRPAMAMKVVYASDKELAAHEARLDLVA 233 Query: 232 --GKNAIWD 238 G + +W Sbjct: 234 QKGGSCLWR 242 >gi|229590113|ref|YP_002872232.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens SBW25] gi|229361979|emb|CAY48879.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens SBW25] Length = 248 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 86/242 (35%), Positives = 123/242 (50%), Gaps = 11/242 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ RIIEIG VEL+ T R F V+L P+ R + A+ +HGIT Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPD-RDSDEGAIGVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 DEFLK KP F+ + EF++F N A + F Q D I+ Sbjct: 63 DEFLKGKPRFAEVADEFFEFINGAQLIIHNAAFDVGFINNEFALMGQTDRADISKHCSIL 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182 Query: 185 FKTNEDRFFKEEKKTVP---NISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 ++ E P R R ++++L EH ++ + K+ A+W Sbjct: 183 GNASDGTGSAEGSGNRPSEIRRLPADRKPTPIIRASEQDLAEHAARLEAIAKSAGAPALW 242 Query: 238 DR 239 + Sbjct: 243 TQ 244 >gi|104782586|ref|YP_609084.1| DNA polymerase III subunit epsilon [Pseudomonas entomophila L48] gi|95111573|emb|CAK16293.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Pseudomonas entomophila L48] Length = 251 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 81/238 (34%), Positives = 117/238 (49%), Gaps = 5/238 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDQRLVILDTETTGMPVGDGHRIIEIGCVEVMGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDP 117 + +HGITD FL KP F + EF++F A + F Q D Sbjct: 60 IGVHGITDAFLVGKPRFGDVAQEFFEFIEGATLVIHNAAFDVGFINNEFALLGQHDRADI 119 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 I+DTL +AR +HP RN L++LCKRYGI S R HGALLDS LL+DVY+ M G Sbjct: 120 SQHCSILDTLMMARSRHPGQRNSLDALCKRYGIDNSGRELHGALLDSELLADVYLAMTGG 179 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + ++ + + + + R +EEL H + + + K+A Sbjct: 180 QTSLSLAGDGAQSEDGQGGTGSEIR-RISGRAAGRVIMANEEELQAHAERLAAIAKSA 236 >gi|113970494|ref|YP_734287.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-4] gi|114047729|ref|YP_738279.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-7] gi|113885178|gb|ABI39230.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4] gi|113889171|gb|ABI43222.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7] Length = 242 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 121/248 (48%), Gaps = 20/248 (8%) Query: 2 IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ RIIEIG VE+++ T R + ++ P G+ Sbjct: 3 IISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA+ +HGITDE + ++P F I EF DF + AHNA FDV F++ E + Sbjct: 62 DPEAIAVHGITDERVANEPRFHQIAQEFIDFISGAEIV--AHNANFDVSFMDHEFSLLQP 119 Query: 116 DPLDPSRIIDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S I + L HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ Sbjct: 120 LGPKTSDICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRLYHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M Q F E + SL R + +EL H++ + + Sbjct: 180 AMTG--GQTKFNLSNEEVGQEAGGIQRFDPTSL----NLKVIRASADELVMHEERLDLVA 233 Query: 233 K--NAIWD 238 K +W Sbjct: 234 KSGKCLWR 241 >gi|120554453|ref|YP_958804.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8] gi|120324302|gb|ABM18617.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8] Length = 236 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 82/237 (34%), Positives = 124/237 (52%), Gaps = 10/237 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D + RIIEIG VE+++ T R + V++ P R+ EA+ +HGI Sbjct: 1 MRQIVLDTETTGIDPNEGHRIIEIGCVEVIERELTGRNYHVYINPE-REVEAEAITVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+EFL DKP F+ + EF++F + + D I+D Sbjct: 60 TNEFLADKPKFAEVADEFFEFIKGAELVIHNAAFDVGFMDSEFARLKPVRKTADHCGIVD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L+IAR+KHP +N+L++LCKRYG+ S+R HGALLD+ +L+DVY+ M G + ++ Sbjct: 120 SLAIARKKHPGQKNNLDALCKRYGVDNSNRDLHGALLDAEILADVYLLMTGGQTALSLD- 178 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDR 239 E +R R T +E HD+ + + K A +W R Sbjct: 179 ----AGSGDEGGDGGIRRISGERAPLAVVRATSDEASAHDEFMAMMEKQAGETVWSR 231 >gi|190571471|ref|YP_001975829.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018874|ref|ZP_03334682.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357743|emb|CAQ55194.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995825|gb|EEB56465.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 234 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 95/241 (39%), Positives = 142/241 (58%), Gaps = 11/241 (4%) Query: 4 KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 K+++R+IV D ETTGLD+K RIIEIG VEL++ T +TF +L P R + K+ Sbjct: 2 KSRLREIVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPE-RDIPYHSFKI 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI++EFL+DKP FS + EF DF N + HNA+FDV F+N EL ++N + R Sbjct: 61 HGISEEFLEDKPLFSDVALEFLDFI--SNDILVIHNAEFDVKFLNMELGKLNAGLISSDR 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+K S LN+LCKR+ I++ R HGAL+D+ LL+ VY+++ G Sbjct: 119 VLDTLPLARKKFVGSPASLNALCKRFDISLEGRELHGALVDAQLLAKVYVELTGGLQTFL 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 F + +D + V N++ + + +E+DEH K + + N +W YI Sbjct: 179 FNNECAQDNNSTFIQHKVRNLARRE------HSPSIKEIDEHKKLLDKIN-NPLWKEYIE 231 Query: 243 S 243 S Sbjct: 232 S 232 >gi|33591629|ref|NP_879273.1| DNA polymerase III subunit epsilon [Bordetella pertussis Tohama I] gi|33598340|ref|NP_885983.1| DNA polymerase III subunit epsilon [Bordetella parapertussis 12822] gi|33603250|ref|NP_890810.1| DNA polymerase III subunit epsilon [Bordetella bronchiseptica RB50] gi|33566898|emb|CAE39114.1| DNA polymerase III, epsilon chain [Bordetella parapertussis] gi|33571272|emb|CAE44737.1| DNA polymerase III, epsilon chain [Bordetella pertussis Tohama I] gi|33577374|emb|CAE34639.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica RB50] gi|332381049|gb|AEE65896.1| DNA polymerase III subunit epsilon [Bordetella pertussis CS] Length = 244 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 113/237 (47%), Gaps = 11/237 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTGLD + RI+EIG VE+++ T ++L P+ R + PEAL +HG+ Sbjct: 1 MRQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNPD-RDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + +F F + + + I+D Sbjct: 60 TTEFLADKPRFAEVAEQFLAFIADAELIAHNAAFDVKFFNAELQRIGRDPLNTHCENIVD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L AR HP RN L++LC RYGI+ +HR+ HGALLDS LL++V++ M G + Sbjct: 120 SLLHARSLHPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLIDV 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 + S+ ++ EL EH +Q L K W Sbjct: 180 DDQGANANGALVLGKFDASV-----LTVLAASEAELAEHAAYLQALDKAVGGACAWR 231 >gi|209517197|ref|ZP_03266042.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] gi|209502333|gb|EEA02344.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] Length = 244 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 10/237 (4%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+ + DRI+E+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNPRGGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I +F DF + + L + IID Sbjct: 60 TTEFLSDKPKFAEIIDQFRDFIQDADLIIHNAPFDIGFLDTEFALLGLPPVSTYCGEIID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLAQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 T L+ + + + +E H+ + L K ++W Sbjct: 180 LGEAQTGGD----THAPRVALESLELVVVAASDDESAAHEAVLDDLDKAVKGTSVWR 232 >gi|117920808|ref|YP_870000.1| DNA polymerase III subunit epsilon [Shewanella sp. ANA-3] gi|117613140|gb|ABK48594.1| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3] Length = 242 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 86/248 (34%), Positives = 125/248 (50%), Gaps = 20/248 (8%) Query: 2 IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ RIIEIG VE+++ T R F ++ P G+ Sbjct: 3 IISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA+ +HGITDE + ++P F I EF DF + AHNA FDV F++ E + Sbjct: 62 DPEAIAVHGITDERVANEPRFHQIAQEFIDFISGAEIV--AHNANFDVSFMDHEFSLLQP 119 Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I+D+L IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ Sbjct: 120 LGPKTSEICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRLYHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M Q F +E + SL + +EL H+K + + Sbjct: 180 AMTG--GQTKFNLSNDEVGQEAGGIQRFDPASL----NLKVISASADELVMHEKRLDLVA 233 Query: 233 K--NAIWD 238 K +W Sbjct: 234 KSGKCLWR 241 >gi|256823144|ref|YP_003147107.1| DNA polymerase III subunit epsilon [Kangiella koreensis DSM 16069] gi|256796683|gb|ACV27339.1| DNA polymerase III, epsilon subunit [Kangiella koreensis DSM 16069] Length = 233 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 92/237 (38%), Positives = 138/237 (58%), Gaps = 11/237 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ RIIEIG VEL++ T + +L P+ R+ A+++HGI Sbjct: 1 MRQIVLDTETTGLEPYDGHRIIEIGCVELVNRKFTGNHYHQYLQPD-REIDQGAMEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122 T+EFL+DKP F + EF +F + HNA FDVGF++ EL ++ D Sbjct: 60 TNEFLEDKPRFVDVVDEFLEFIEGAE--LVIHNAPFDVGFLDHELSMLDSSKGKLSDYCT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+ HP RN L++LCKRY I SHR HGALLDS +L+DVY++M G + + Sbjct: 118 VLDTLVLARQMHPGQRNSLDALCKRYEIDNSHRELHGALLDSEILADVYLRMTGGQTSLT 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 G ++ ++ +T R + T++E EH + + +L +AIW++ Sbjct: 178 LG---RQNAANQQTTETTVRRISANRQPLKVIKATEQESKEHQQKLSSLN-DAIWNQ 230 >gi|161504623|ref|YP_001571735.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865970|gb|ABX22593.1| hypothetical protein SARI_02738 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 246 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 127/242 (52%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + R E + + + T EEL H+ + + K + Sbjct: 187 SMTFAIEGETQRQQGEATIQRI---VRQASRLRVVFATDEELAAHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|167623805|ref|YP_001674099.1| DNA polymerase III subunit epsilon [Shewanella halifaxensis HAW-EB4] gi|167353827|gb|ABZ76440.1| DNA polymerase III, epsilon subunit [Shewanella halifaxensis HAW-EB4] Length = 242 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 119/240 (49%), Gaps = 16/240 (6%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+I+ D ETTG++ RIIEIG VE+++ T R + ++ P + EA+ Sbjct: 9 RQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QPIDEEAIA 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDPLDP 120 +HGIT+EF+ DKP F I F +F + N + LQ D Sbjct: 68 VHGITNEFVADKPKFHEIAQSFIEFIDGAEIVAHNANFDVSFMDHEFSMLQPRGPKTADI 127 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +I+D+L+IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ M G ++ Sbjct: 128 CQILDSLAIAKHLHPGQKNNLDALCKRYGIDNSARDLHGALLDAEILADVYLLMTGGQTK 187 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWD 238 N + + + R K + +EL H++ + + K+ +W Sbjct: 188 FNLSSEKAGQEGGGIHRLSA------DRSKLKVIAASADELIRHEERLDLVAKSGQCLWR 241 >gi|146310412|ref|YP_001175486.1| DNA polymerase III subunit epsilon [Enterobacter sp. 638] gi|145317288|gb|ABP59435.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638] Length = 245 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 131/242 (54%), Gaps = 18/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGRNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF ++ N + HNA FD+GF++ E ++N++ + Sbjct: 69 HGIADEFLLDKPTFADVADEFIEYINGAE--LVIHNASFDIGFMDYEFSKLNRNIPKTNT 126 Query: 123 IIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 AR+ +P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKVTDSLALARKMYPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLLMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F +++ + + V + ++EEL EH+ + + K + Sbjct: 187 SMAFSTESDSQQQANGGIQRVVRQDS----RLRVILASEEELAEHESRLDIVQKKGGSCL 242 Query: 237 WD 238 W Sbjct: 243 WR 244 >gi|91784549|ref|YP_559755.1| DNA polymerase III subunit epsilon [Burkholderia xenovorans LB400] gi|91688503|gb|ABE31703.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400] Length = 244 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 76/237 (32%), Positives = 114/237 (48%), Gaps = 10/237 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRI+E+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F I +F DF + + L + IID Sbjct: 60 TTEFLSDKPKFGEIADQFRDFIQGADLIIHNAPFDIGFLDVEFALLGLPPVSTYCGEIID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 V SL + + +EL H + L K ++W Sbjct: 180 LGESHAGGDARAPRVAIDSLD----LVVITASDDELAAHQALLDGLDKAIKGTSVWR 232 >gi|268592015|ref|ZP_06126236.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131] gi|291312407|gb|EFE52860.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131] Length = 247 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 87/244 (35%), Positives = 132/244 (54%), Gaps = 18/244 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P+ R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+DEFL+DKP F+ I EF +F + HNA FD+GF++ E +++NK Sbjct: 66 HGISDEFLQDKPVFAEIADEFLEFIRGAE--LVIHNAPFDIGFMDYEFRKLNKGIPPTQD 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +AR+ P RN+L++LC RY I S R+ HGALLD+ +LSDVY+ M G + Sbjct: 124 FCTITDSLVLARKLFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----A 235 ++F + +E + + EEL H+ + + K Sbjct: 184 SLSFSMDSESANNEQEYEIQRIERPQT---GLRVIFASDEELIAHEARLDIVDKKGGKPC 240 Query: 236 IWDR 239 +W + Sbjct: 241 LWRQ 244 >gi|283783999|ref|YP_003363864.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168] gi|282947453|emb|CBG87000.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168] Length = 243 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 132/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F ++L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHIYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E ++N+D Sbjct: 66 HGIADEFLLDKPTFADVADEFLDYIRGAE--LVIHNASFDIGFMDYEFSKLNRDIPKTSS 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + + EE + + K + EE+ H+ + + K + Sbjct: 184 SMTFAMEGETQQQQGEETIQRL---VRQARKLRVVFASDEEVAAHEARLDLVEKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|226328903|ref|ZP_03804421.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198] gi|225202089|gb|EEG84443.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198] Length = 250 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 89/242 (36%), Positives = 134/242 (55%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPE-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+DEFL+D PSF+ I EF ++ I HNA FD+GF++ E +++N+D Sbjct: 66 HGISDEFLEDCPSFADIADEFLEYIRGAE--LIIHNASFDIGFMDYEFRKLNRDIPPTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR P RN+L++LC RY I S R+ HGALLD+ +LSDVY+ M G + Sbjct: 124 FCQITDSLAMARALFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + + ++ + R T EEL EH+ + + K + Sbjct: 184 ALAFSMEGESNNEQEQNDIQRIERPVS---GLRVIRATAEELAEHESRLDLVEKKGGHCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|294637713|ref|ZP_06715990.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685] gi|291089143|gb|EFE21704.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685] Length = 243 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 127/242 (52%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVINRRLTGRNFHVYLKPD-RLVDPEAFMV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLD 119 HGI+D+FL +PSF+ + EF +F + HNA FD+GF++ E R Sbjct: 66 HGISDDFLLGQPSFADVVDEFLEFIRGAE--LVIHNAPFDIGFMDYEFAKLGRDLPKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 ++F + + + + + ++ EL H++ + + K + Sbjct: 184 SLSFASEGDSATQVQAAEL---RRVVRGAQGLRVVYASEAELAAHEQRLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|91793373|ref|YP_563024.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans OS217] gi|91715375|gb|ABE55301.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans OS217] Length = 242 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 82/242 (33%), Positives = 122/242 (50%), Gaps = 20/242 (8%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+I+ D ETTG++ RIIEIG VE+++ T RT+ ++ P G+ PEA+ Sbjct: 9 RQIILDTETTGMNQAGGAIYIGHRIIEIGCVEVINRRLTGRTYHQYINP-GQSIDPEAIA 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGITDE + ++P F I EF DF AHNA FDV F++ E + Sbjct: 68 VHGITDERVANEPRFHQIAQEFIDFIQGAEIV--AHNASFDVSFMDHEFSMLQPRGPKTK 125 Query: 122 RIIDTLS---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 I D L IA+R HP +N+L++LCKRYGI S R+ HGALLD+ +L+DVY+ M G Sbjct: 126 DITDILDSLAIAKRLHPGQKNNLDALCKRYGIDNSRRTYHGALLDAEILADVYLLMTGGQ 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAI 236 + N + ++ + + +EL H+ + + K + Sbjct: 186 IKFNLSNEQAGQEAGGIQRLDPSGFN------LKVIAASADELVLHESRLDLVQKSGKCL 239 Query: 237 WD 238 W Sbjct: 240 WR 241 >gi|118161395|gb|ABK64077.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum] Length = 238 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 83/236 (35%), Positives = 116/236 (49%), Gaps = 13/236 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + DRI+EIGAVEL + T F ++ P R + AL +HG+ Sbjct: 1 MRQIVLDTETTGLNPRTGDRILEIGAVELNNRMLTGNNFHHYINPE-RDSEEGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I EF F + + +ID Sbjct: 60 TTEFLSDKPKFAEIAEEFRAFIAGAELIIHNAPFDIGFLNAEFKRLNLPPVHEQVHGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A+ HP RN L++LC RYG++ +HR HGALLDS LL+DVY+ M G + ++ Sbjct: 120 TLVQAKEMHPGKRNSLDALCDRYGVSNAHRKLHGALLDSELLADVYLAMTRGQNSLSMEE 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237 + E + ++ + +F T +EL H+ TI L K IW Sbjct: 180 EV-------EVAADGAVLEIVPLAEVIFQSATADELAAHEATIAGLDKAAKGQCIW 228 >gi|238897890|ref|YP_002923569.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465647|gb|ACQ67421.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 241 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 94/242 (38%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTGL+ + IIEIGAVE+++ T +TF ++ PN R+ PEA ++ Sbjct: 3 RQIVLDTETTGLNKTGPHYEGHNIIEIGAVEVINRRLTGKTFHTYVRPN-RQVDPEAYQI 61 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+DEFL DKP FS IFS+F++F I HNA FD+GF++ E + ++ Sbjct: 62 HGISDEFLSDKPRFSEIFSQFFEFIRGSE--LIIHNAAFDIGFMDYEFSALQQNIPKTNT 119 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + DTL++ARR P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 120 FCTVTDTLALARRLFPGKRNSLDALCDRYQIDNSKRTLHGALLDAQILAEVYLAMTGGQT 179 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 +F +T+E TV + + + +ELDEH ++ L K I Sbjct: 180 LFSFSDETDETDIR---NMTVRPKRVKTSSQLKIIYASCDELDEHQASLDLLEKKEGSCI 236 Query: 237 WD 238 W Sbjct: 237 WR 238 >gi|329900785|ref|ZP_08272589.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] gi|327549374|gb|EGF33942.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] Length = 235 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 79/237 (33%), Positives = 122/237 (51%), Gaps = 11/237 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + DR+IEIG VE+++ T + F +L P R + AL +HG+ Sbjct: 1 MRQIVLDTETTGLNPRSGDRVIEIGCVEMINRRLTGKNFHCYLNPE-RDSEEGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL+DKP F+++ +E D+ + + I S +ID Sbjct: 60 TTEFLRDKPKFAAVAAELRDYISGAEVIIHNAPFDVGFLDAEFKRLDIPLFNTQVSGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A+ HP RN L+SLC RYG++ +HR+ HGALLD+ LL++VY+ M G + ++ Sbjct: 120 TLVQAKEMHPGKRNSLDSLCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLSMEL 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 + ++ L+ L + EEL EH+ + L K ++W Sbjct: 180 DDGDQAGESG-----AHLELVPLADILVLPASAEELGEHELALTALDKEMRGTSLWR 231 >gi|225677154|ref|ZP_03788153.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590821|gb|EEH12049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 231 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 93/237 (39%), Positives = 140/237 (59%), Gaps = 11/237 (4%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 ++K+R+IV D ETTGLD+ RIIEIG VEL++ T + F +L P R + K+ Sbjct: 2 ESKLREIVLDTETTGLDTGSGHRIIEIGCVELINRIPTGKVFHRYLNPE-RDIPYHSFKI 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI++EFL+DKP FS + EF DF N + HNA+FDV F+N EL ++N + R Sbjct: 61 HGISEEFLEDKPLFSDVALEFLDFI--SNDILVIHNAEFDVKFLNMELSKLNAGLISSDR 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+K S LN+LCKR+ I++ +R HGAL+D+ LL+ VY+++ G Sbjct: 119 VLDTLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTFL 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 F + N+D + V N++ P EE+DEH K + + N +W++ Sbjct: 179 FDNECNQDSNSTFVQHKVRNLT------PREHSPNSEEIDEHKKLLDKIN-NTLWNK 228 >gi|261346344|ref|ZP_05973988.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM 4541] gi|282565658|gb|EFB71193.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM 4541] Length = 253 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 85/244 (34%), Positives = 131/244 (53%), Gaps = 18/244 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+DEFL+DKP F+ I EF +F I HNA FD+GF++ E +++N+ Sbjct: 66 HGISDEFLQDKPVFAEIADEFIEFIRGAE--LIIHNAPFDIGFMDYEFRKLNRGIPPTAE 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +AR+ P RN+L++LC RY I S R+ HGALLD+ +LSDVY+ M G + Sbjct: 124 FCSITDSLVLARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----A 235 + F ++ + + + +E+ EH+ + + K Sbjct: 184 SLAFSMDSDSKNIQQANEIQRIQRPAS---GLKVLYASDQEIAEHEARLDIVDKKGGKPC 240 Query: 236 IWDR 239 +W + Sbjct: 241 LWRK 244 >gi|119503277|ref|ZP_01625361.1| response regulator receiver domain protein (CheY-like) [marine gamma proteobacterium HTCC2080] gi|119460923|gb|EAW42014.1| response regulator receiver domain protein (CheY-like) [marine gamma proteobacterium HTCC2080] Length = 239 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 91/241 (37%), Positives = 135/241 (56%), Gaps = 12/241 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++V D ETTGL+ + RIIEIG VEL++ T R F ++ P R AL +HGIT Sbjct: 3 RQVVLDTETTGLEVSQGHRIIEIGCVELINRRLTGRHFHQYIQPE-RDIDAGALAVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SRI 123 EFL DKP+F I ++F F + I HNA FDVGFI+AEL R N+D I Sbjct: 62 PEFLADKPTFDRIANDFVTFIDGAE--LIIHNAPFDVGFIDAELARFNRDHPSTSALCSI 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL++AR KHP RN L++LC+RY + + R+ HGALLD+ +L+DV++ M G + + Sbjct: 120 VDTLTLARSKHPGQRNSLDALCQRYHVDNASRTLHGALLDAEILADVFLIMTGGQTSLGL 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWDR 239 + +E+ + + +S ++ P T EL H+ + + G +W Sbjct: 180 HDEPSEEGGSGLGARGIRRLSSERKPLP-VINATAAELSRHENRLDQIATHSGGAVLWRE 238 Query: 240 Y 240 + Sbjct: 239 H 239 >gi|304408611|ref|ZP_07390232.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183] gi|307305439|ref|ZP_07585187.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175] gi|304352432|gb|EFM16829.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183] gi|306911742|gb|EFN42167.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175] Length = 242 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 122/246 (49%), Gaps = 16/246 (6%) Query: 2 IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ RIIEIG VE+++ T R + ++ P G+ Sbjct: 3 IISNANRQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINP-GQTI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRIN 114 PEA+ +HGITDE + +P F + +F +F + N + LQ Sbjct: 62 DPEAIAVHGITDERVSKEPRFHQVAQDFINFIDGAEIVAHNANFDVSFMDHEFSLLQPRG 121 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D +I+DTL IA+ HP +N+L++LCKRYG+ S R HGALLD+ +L+DVY+ M Sbjct: 122 PKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYLIM 181 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233 G ++ N + ++ +++ + +EL+ H++ + + K Sbjct: 182 TGGQTKFNLSNEEAGQEAGGIQRFDPQSLN------LKVIGASADELNMHEQRLDLVAKS 235 Query: 234 -NAIWD 238 +W Sbjct: 236 GKCLWR 241 >gi|295677150|ref|YP_003605674.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] gi|295436993|gb|ADG16163.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] Length = 244 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 10/237 (4%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRI+E+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARGGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I +F DF + L + IID Sbjct: 60 TTEFLSDKPKFAEIIDQFRDFIQGADLIIHNAPFDIGFLDAEFALLGLPPVSTHCGEIID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLAQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 + V L + + + +E H+ + L K ++W Sbjct: 180 LGEAQAGGDTDAPRVA----LDSLELVVIAASDDESAAHEAVLDDLDKAIKGASVWR 232 >gi|90581658|ref|ZP_01237447.1| DNA polymerase III subunit epsilon [Vibrio angustum S14] gi|90437142|gb|EAS62344.1| DNA polymerase III subunit epsilon [Vibrio angustum S14] Length = 241 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 140/247 (56%), Gaps = 17/247 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R IVFD ETTG++ + RIIEIGAVE+++ T +TF V++ P+ R Sbjct: 1 MKATNQRIIVFDTETTGMNMTGPHYEGHRIIEIGAVEIINRKLTGKTFHVYIKPD-RPID 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114 PEA+ +HGITDEFL KPS++ I EF DF + +AHNA FD+GF++ E Q + Sbjct: 60 PEAIDVHGITDEFLIGKPSYADIHQEFIDFIDGAE--LVAHNASFDIGFMDYEFQLMGSD 117 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 K D ++ DTL +A+R P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 118 LKKTEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLM 177 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 M G + + D + K + + +R + +EL H++ + +GK Sbjct: 178 MTGGQTSLKLSGDDEGDSEKEFAIKRL----VSERKGLKVICASADELVSHEERLDLIGK 233 Query: 234 NA--IWD 238 +W Sbjct: 234 KTDVLWR 240 >gi|269140166|ref|YP_003296867.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202] gi|267985827|gb|ACY85656.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202] gi|304559999|gb|ADM42663.1| DNA polymerase III epsilon subunit [Edwardsiella tarda FL6-60] Length = 243 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 86/242 (35%), Positives = 128/242 (52%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPD-RLVDPEAFTV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLD 119 HGI+D+FL DKPSF+ + EF F + HNA FD+GF++ E R Sbjct: 66 HGISDDFLLDKPSFAEVADEFLAFIRGAE--LVIHNAPFDIGFMDYEFAKLGRDLPKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M Sbjct: 124 FCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMTG--G 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 Q + F ++ D + + + + + ++ EL H++ + + K + Sbjct: 182 QTSLAFSSDGDGTSQSQASEIRRVVRGAK-GLRVVYASEAELAAHEQRLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|209364170|ref|YP_001425094.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway 5J108-111] gi|212213173|ref|YP_002304109.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212] gi|212218153|ref|YP_002304940.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154] gi|215918940|ref|NP_819360.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493] gi|206583825|gb|AAO89874.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493] gi|207082103|gb|ABS77173.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway 5J108-111] gi|212011583|gb|ACJ18964.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212] gi|212012415|gb|ACJ19795.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154] Length = 236 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 89/240 (37%), Positives = 128/240 (53%), Gaps = 14/240 (5%) Query: 5 NKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N MR+IV D ETTGL + RIIEIGA+E+++ T ++ P R +A+++H Sbjct: 3 NLMRQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPE-RSIERDAIEIH 61 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDP 120 GITD FL DKP F I +E F I HNA FDVGF+N EL+ + K Sbjct: 62 GITDSFLIDKPLFKDIATELISFLKGAE--LIIHNAPFDVGFLNHELKLTGQSFKTLTHY 119 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +++DTL+IAR+KHP N+L++LC+RY + S+R HGALLD+ LL+ VY+ M G + Sbjct: 120 CQVLDTLTIARQKHPGQHNNLDALCRRYHVDNSNRDYHGALLDAELLAQVYLLMTGGQTV 179 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWD 238 + + F + RD R E + H +Q L +N +W+ Sbjct: 180 LF-----EQQGFAVASRSVSVRPLGTDRDSLSVIRANAAETEAHRAFLQLLTENGLCLWN 234 >gi|260772249|ref|ZP_05881165.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] gi|260611388|gb|EEX36591.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] Length = 246 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 89/243 (36%), Positives = 136/243 (55%), Gaps = 18/243 (7%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE++D T R F V+L P+ R+ P+A++ Sbjct: 11 RIVVLDTETTGMNFEGGPHYEGHRIIEIGAVEIIDRKLTGRHFHVYLKPD-REIQPQAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118 +HGITD FL DKP + + EF DF +AHNA FDVGF++ E ++N Sbjct: 70 VHGITDAFLVDKPQYKEVHQEFLDFIKGAE--LVAHNASFDVGFMDYEFAKVNPAIGKTE 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +I DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 QYCKITDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 + + F + E + +R R + +E++ H + + + K+ + Sbjct: 188 TSLQF----SASSQSGEPAGSFVQRVQGERKNLKVLRASADEIEAHQQRLDVVEKSGICL 243 Query: 237 WDR 239 W + Sbjct: 244 WRQ 246 >gi|71726088|gb|AAZ39211.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum] Length = 238 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 80/236 (33%), Positives = 114/236 (48%), Gaps = 13/236 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + DRI+EIG VEL + T F ++ P R + AL +HG+ Sbjct: 1 MRQIVLDTETTGLNPRTGDRILEIGGVELNNRMLTGNNFHQYINPE-RDSEEGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I EF F + + +ID Sbjct: 60 TTEFLSDKPKFAEIAEEFRAFIAGAELIIHNAPFDIGFLNAEFKRLNLPPVHEQVHGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A+ HP RN L++LC RYG++ +HR HGALLDS LL+DVY+ M G + ++ Sbjct: 120 TLVQAKEMHPGKRNSLDALCDRYGVSNAHRKLHGALLDSELLADVYLAMTRGQNSLSMEE 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237 + + ++ + +F T +EL H+ +I L K IW Sbjct: 180 EVEVAADGAA-------LEIVPLAEVIFQSATADELAAHEASIAGLDKAAKGQCIW 228 >gi|323938758|gb|EGB35004.1| DNA polymerase III [Escherichia coli E1520] Length = 246 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 129/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIG VE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGGVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ + + + K T EEL H+ + + K + Sbjct: 187 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|315634676|ref|ZP_07889960.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter segnis ATCC 33393] gi|315476624|gb|EFU67372.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter segnis ATCC 33393] Length = 253 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 127/247 (51%), Gaps = 13/247 (5%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 I+ N R+IV D ETTG++ + IIEIGAVE+++ T F +++ PN R Sbjct: 3 IQINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPN-RPVD 61 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA+K+HGITDE L DKP FS I +EF ++ + Sbjct: 62 PEAIKVHGITDEMLADKPDFSQIANEFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIK 121 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 D ++ DTL++AR+ +P +N+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 122 TNDICQVTDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLAMTG 181 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--- 233 G + + F NE ++ + ++ T+EEL H + ++ + K Sbjct: 182 GQTSL---FDENESEIIQQVNEQQIQSAVAFSHNLRLLTPTEEELQAHLEYLKLINKKSK 238 Query: 234 -NAIWDR 239 N +W R Sbjct: 239 DNCLWTR 245 >gi|170695448|ref|ZP_02886593.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] gi|170139639|gb|EDT07822.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] Length = 247 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 115/237 (48%), Gaps = 10/237 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRI+E+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I + DF + L + IID Sbjct: 60 TTEFLSDKPKFADIADQIRDFIQGADLIIHNAPFDIGFLDAEFALLGLPPVSTYCGEIID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 + V SL + + +EL H + + L K ++W Sbjct: 180 LGESHAGGEAHAPRVAIESLD----LVVIAASDDELAAHQEVLDGLDKAIRGTSVWR 232 >gi|302187967|ref|ZP_07264640.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. syringae 642] gi|330952814|gb|EGH53074.1| DNA polymerase III subunit epsilon [Pseudomonas syringae Cit 7] gi|330972572|gb|EGH72638.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aceris str. M302273PT] Length = 259 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 122/246 (49%), Gaps = 11/246 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 +EFL KP F+ + EF++F A + F + D I+ Sbjct: 68 NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSIL 127 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187 Query: 185 FKTNE---DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237 ++ + + R R ++ EL EH+ + T+ K +W Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKACGAPPLW 247 Query: 238 DRYISS 243 + + + Sbjct: 248 VQMLEA 253 >gi|254448791|ref|ZP_05062248.1| DNA polymerase III, epsilon subunit [gamma proteobacterium HTCC5015] gi|198261632|gb|EDY85920.1| DNA polymerase III, epsilon subunit [gamma proteobacterium HTCC5015] Length = 239 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 98/242 (40%), Positives = 135/242 (55%), Gaps = 15/242 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTGLD K RIIEIG VEL + T ++L P+ R+ A+++H I Sbjct: 1 MRQVVLDTETTGLDPKQGHRIIEIGCVELENRRLTGNKLHMYLQPD-REIDDGAIEVHQI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 T+EFL DKP F + EF DF + HNA FDVGFI++EL R D Sbjct: 60 TNEFLADKPRFGDVVDEFLDFVKGSE--LVIHNAAFDVGFIDSELNLLDRNLGQTKDYCG 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL++AR+ HP RNDL+SLCKRY I SHR+ HGALLD+ +L+DVY+ M Q++ Sbjct: 118 VLDTLAMARKMHPGKRNDLDSLCKRYDINNSHRTLHGALLDAEILADVYLMMTG--GQVS 175 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-----AIW 237 GF + + E+ IS R + EE + H+K + L +W Sbjct: 176 LGFDAKQKQEADAEQGGAHRISQ-DRAPLQVITASPEEQERHEKLLANLRGKDGDQPCLW 234 Query: 238 DR 239 D+ Sbjct: 235 DQ 236 >gi|66045009|ref|YP_234850.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. syringae B728a] gi|63255716|gb|AAY36812.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Pseudomonas syringae pv. syringae B728a] Length = 259 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 122/246 (49%), Gaps = 11/246 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 +EFL KP F+ + EF++F A + F + D I+ Sbjct: 68 NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSIL 127 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187 Query: 185 FKTNE---DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237 ++ + + R R ++ EL EH+ + T+ K +W Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKACGAPPLW 247 Query: 238 DRYISS 243 + + + Sbjct: 248 VQMLEA 253 >gi|304413386|ref|ZP_07394859.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola LSR1] gi|304284229|gb|EFL92622.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola LSR1] Length = 242 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 85/240 (35%), Positives = 130/240 (54%), Gaps = 16/240 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTGL+ + R+IEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGLNKVGAHYQGHRVIEIGAVEMVNRRLTGNHFHVYLKPD-RLVDPEAYAI 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLD 119 HGI+DEFL DKP+F+ F DF + I HNA FD+GF++ E + + + Sbjct: 66 HGISDEFLADKPTFADTAKTFLDFIRGAD--LIIHNASFDIGFLDYEFRLLEQNSAKIET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +AR+ P RN+LN+LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCTITDSLLLARQLFPGKRNNLNALCDRYHIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIW 237 ++F +T++ ++ K + +EL H ++ + K +W Sbjct: 184 SLSFSMETDQQ---QQNNKEEIKPIVRPTSALKIIYANADELATHQALLEGMVKKGKCLW 240 >gi|114563375|ref|YP_750888.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB 400] gi|114334668|gb|ABI72050.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB 400] Length = 242 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 120/240 (50%), Gaps = 16/240 (6%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+++ D ETTG++ RIIEIG VE+++ T RT+ ++ P G+ EA++ Sbjct: 9 RQVILDTETTGMNQAGGPIYVGHRIIEIGCVEVINRRLTGRTYHQYINP-GQAIDEEAIQ 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDPLDP 120 +HGIT++ + ++P F I +F DF + N ++L I D Sbjct: 68 VHGITNDRVANEPRFHQIAKDFIDFIDGAEIVAHNANFDVSFMDHEFSKLNPIGPKTKDI 127 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I+D+L+IA+R HP +N+L++LC+RYGI R+ HGALLD+ +L+DVY+ M Q Sbjct: 128 CSILDSLAIAKRLHPGQKNNLDALCRRYGIDNGRRTYHGALLDAEILADVYLIMTG--GQ 185 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWD 238 I F + K + + + +E+ H++ + + K +W Sbjct: 186 IKFNLSNEKAGQEGGGIKNIDPSAF----NLKVVGASADEILLHEQRLDLIAKSGKCLWR 241 >gi|37524935|ref|NP_928279.1| DNA polymerase III subunit epsilon [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784361|emb|CAE13238.1| DNA polymerase III epsilon chain [Photorhabdus luminescens subsp. laumondii TTO1] Length = 248 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 130/248 (52%), Gaps = 17/248 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R++V D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA ++ Sbjct: 7 RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIQPD-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI+DEFL+DKP F+ I EF +F I HNA FD+GFI+ E R D Sbjct: 66 HGISDEFLQDKPLFADIADEFIEFIRGAE--LIIHNAPFDIGFIDYEFGKLNRDIPPTAD 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR P RN+L++LC RY I S R+ HGALLD+ +LSDVY+ M Sbjct: 124 FCKITDSLQLARGLFPGKRNNLDALCDRYDIDNSKRTLHGALLDAEILSDVYLIMTG--G 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 Q + F + + I+ + T EEL H+ + + K + Sbjct: 182 QTSLAFSMEGEIASGANVSEIQRITRPQ-MALKVIYATDEELAAHESRLDLVEKKGGSCL 240 Query: 237 WDRYISSN 244 W + + Sbjct: 241 WRMNLGQS 248 >gi|187479401|ref|YP_787426.1| DNA polymerase III subunit epsilon [Bordetella avium 197N] gi|115423988|emb|CAJ50541.1| DNA polymerase III, epsilon chain [Bordetella avium 197N] Length = 243 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 128/239 (53%), Gaps = 16/239 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTGLD + RI+EIG VEL++ T R ++L P+ R + PEAL +HG+ Sbjct: 1 MRQIIFDTETTGLDPAQGHRIVEIGCVELVNRMVTGRNLHLYLNPD-RDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--I 123 T FL DKP F I F F IAHNA FDV F NAELQ++ + LD + Sbjct: 60 TTAFLSDKPRFGDIAEAFIQFIEGAE--LIAHNASFDVKFFNAELQKVGRKTLDNYCASV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L+ AR P RN L++LC RYGI+ +HR+ HGALLDS LL++V++ M G + Sbjct: 118 TDSLAHARTLFPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 N+ ++ E+L EH+ + L K + +W Sbjct: 178 DVDDNQAGG------NRIALAAFDASVLPVVAAAGEDLTEHEAYLAALDKAVGGSCLWR 230 >gi|126174224|ref|YP_001050373.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155] gi|125997429|gb|ABN61504.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155] Length = 242 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 121/246 (49%), Gaps = 16/246 (6%) Query: 2 IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ RIIEIG VE+++ T R + ++ P G+ Sbjct: 3 IISNANRQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRIN 114 PEA+ +HGITDE + +P F + +F +F + N + LQ Sbjct: 62 DPEAIAVHGITDERVSKEPRFHQVAQDFINFIDGAEIVAHNANFDVSFMDHEFSLLQPRG 121 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D +I+DTL IA+ HP +N+L++LCKRYG+ S R HGALLD+ +L+DVY+ M Sbjct: 122 PKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYLIM 181 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233 G ++ N + ++ +++ + +EL H++ + + K Sbjct: 182 TGGQTKFNLSNEEAGQEAGGIQRFDPQSLN------LKVIGASADELTMHEQRLDLVAKS 235 Query: 234 -NAIWD 238 +W Sbjct: 236 GKCLWR 241 >gi|331019245|gb|EGH99301.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 259 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 125/246 (50%), Gaps = 11/246 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ RI+EIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 +EFL KP F+ + EF++F A + F + D +I+ Sbjct: 68 NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCKIL 127 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187 Query: 185 FKTNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 ++ E + + R R ++ EL EH+ + T+ K A+W Sbjct: 188 GNASDGNGSAEGSGNRGSEIRRLPADRKPCRVIRASESELAEHEVRMTTIAKATGAPALW 247 Query: 238 DRYISS 243 + + + Sbjct: 248 VQMLEA 253 >gi|28870866|ref|NP_793485.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato str. DC3000] gi|28854115|gb|AAO57180.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. tomato str. DC3000] Length = 257 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 125/246 (50%), Gaps = 11/246 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ RI+EIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 7 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 65 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 +EFL KP F+ + EF++F A + F + D +I+ Sbjct: 66 NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCKIL 125 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 126 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 185 Query: 185 FKTNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 ++ E + + R R ++ EL EH+ + T+ K A+W Sbjct: 186 GNASDGNGSAEGSGNRGSEIRRLPADRKPCRVIRASESELAEHEVRMTTIAKATGAPALW 245 Query: 238 DRYISS 243 + + + Sbjct: 246 VQMLEA 251 >gi|237803575|ref|ZP_04591160.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025557|gb|EGI05613.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae str. 1_6] Length = 257 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 124/246 (50%), Gaps = 11/246 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 +EFL KP F+ + EF++F A + F + D I+ Sbjct: 68 NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGDQDRSDITRHCSIL 127 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187 Query: 185 FKTNE---DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237 ++ + + R R ++ EL EH+ + T+ K +A+W Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPANRKPCRVIRASESELAEHEVRMSTIAKASGASALW 247 Query: 238 DRYISS 243 + + + Sbjct: 248 VQMLEA 253 >gi|212709216|ref|ZP_03317344.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM 30120] gi|212688128|gb|EEB47656.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM 30120] Length = 253 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 85/244 (34%), Positives = 132/244 (54%), Gaps = 18/244 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P+ R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+DEFL+DKP F+ I EF +F + HNA FD+GF++ E +++N+ Sbjct: 66 HGISDEFLQDKPVFADIADEFIEFIRGAE--LVIHNAPFDIGFMDYEFRKLNRGIPPTAE 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +AR+ P RN+L++LC RY I S R+ HGALLD+ +LSDVY+ M G + Sbjct: 124 FCTITDSLVLARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----A 235 + F ++ + + + EE+ EH+ + + K Sbjct: 184 SLAFSMESESSNTEQANAIQRIERPVS---GLKVLYASDEEVAEHEARLDIVDKKGGKPC 240 Query: 236 IWDR 239 +W + Sbjct: 241 LWRQ 244 >gi|307132179|ref|YP_003884195.1| DNA polymerase III subunit epsilon [Dickeya dadantii 3937] gi|306529708|gb|ADM99638.1| DNA polymerase III epsilon subunit [Dickeya dadantii 3937] Length = 244 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 125/242 (51%), Gaps = 16/242 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYLRPD-RLVDPEAYNV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI+DEFL DKP++ + +F DF + HNA FD+GF++ E +R Sbjct: 66 HGISDEFLADKPTYGDVVDDFLDFIRGAE--LVIHNATFDIGFMDYEFRLLKRDIPKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M Sbjct: 124 FCTITDSLQMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTG--G 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 Q + F D + + + EEL H++ + + K + Sbjct: 182 QTSLAFSMEGDTQQQTAQTETIQRIARPASALAVLYASDEELAAHEQRLDLIMKKGGSCL 241 Query: 237 WD 238 W Sbjct: 242 WR 243 >gi|88800079|ref|ZP_01115649.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297] gi|88777205|gb|EAR08410.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297] Length = 238 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 84/237 (35%), Positives = 129/237 (54%), Gaps = 14/237 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTGL+ K DRI+E+G VE++D T R F ++ P R E + +HGI Sbjct: 1 MRQVVLDTETTGLNPTKGDRIVEVGCVEMVDRKLTGRHFHYYINPE-RDIPDEVVAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----- 120 ++ +KD P F I E W + + HNA FD+GF+NAE +R ++ +P Sbjct: 60 DNDKVKDSPKFRDIAVELWTWLEGAE--LVIHNAAFDMGFLNAEFERFAQEQREPFEKLE 117 Query: 121 --SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++DTL +AR KHP S+ L++LCKRYGI SHR+ HGALLDS +L+DVY+ + G Sbjct: 118 TVCGVLDTLKVARDKHPGSKVSLDALCKRYGIDNSHRTLHGALLDSEILADVYLMLTGGQ 177 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + + + + + + S + + + EL H+ I L + + Sbjct: 178 TALILDDSSESGSSDQAVDVSALDDSGG---HLITVQPSSAELAAHEAFIDMLAEKS 231 >gi|332286832|ref|YP_004418743.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7] gi|330430785|gb|AEC22119.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7] Length = 236 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 109/237 (45%), Gaps = 11/237 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + R++E+ VE+ + S T R ++L P GR + PEAL +HG+ Sbjct: 1 MRQIVLDTETTGLDPAQGHRVVELACVEMENRSLTGRHLHLYLNP-GRDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL P F + + D+ + + +I D Sbjct: 60 TTEFLSGHPRFEEVAQQLVDYVKDAEVIIHNAAFDVKFLNAELTRAGLPVFNSLCGKITD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L AR HP RN L++LC+RYGI+ +HR+ HGALLDS LL+DV++ M G + F Sbjct: 120 SLLHARELHPGKRNSLDALCERYGISNAHRTLHGALLDSELLADVWLAMTRGQDALLMDF 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 + + + + EL H+ + L K +W Sbjct: 180 EDDGSTGA-----NGMRLEQFDASTLKVVLAGEAELQAHNDYLAGLDKTAGTPCVWR 231 >gi|330939732|gb|EGH43019.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. pisi str. 1704B] Length = 259 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 122/246 (49%), Gaps = 11/246 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ RI+EIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RAVVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 +EFL KP F+ + EF++F A + F + D ++ Sbjct: 68 NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSVL 127 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187 Query: 185 FKTNE---DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237 ++ + + R R ++ EL EH+ + T+ K +W Sbjct: 188 GNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKACGAPPLW 247 Query: 238 DRYISS 243 + + + Sbjct: 248 VQMLEA 253 >gi|197284137|ref|YP_002150009.1| DNA polymerase III subunit epsilon [Proteus mirabilis HI4320] gi|194681624|emb|CAR40653.1| DNA polymerase III, epsilon subunit [Proteus mirabilis HI4320] Length = 252 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 132/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPE-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119 HGI+DEFL+D PSF+ I EF + I HNA FD+GF++ E Q++N+D Sbjct: 66 HGISDEFLEDCPSFAEIADEFLAYIRGAE--LIIHNASFDIGFMDYEFQKLNRDIPLTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR P RN+L++LC RY I S R+ HGALLD+ +L+DVY+ M Sbjct: 124 FCQITDSLAMARELFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILADVYLAMTG--G 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 Q F + +++ + I R + + EEL H+ + + K + Sbjct: 182 QTALAFSMEGESNEEQKGDDIQRIVRPVR-GLRVIKASAEELVAHEARLDLVVKKGGHCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|330963305|gb|EGH63565.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. actinidiae str. M302091] Length = 259 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 125/246 (50%), Gaps = 11/246 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ RI+EIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 +EFL KP F+ + EF++F A + F + D +I+ Sbjct: 68 NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCKIL 127 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187 Query: 185 FKTNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 ++ E + + R R ++ EL EH+ + T+ K A+W Sbjct: 188 GNASDGNGSAEGSSNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTIAKATGAPALW 247 Query: 238 DRYISS 243 + + + Sbjct: 248 VQMLEA 253 >gi|213968849|ref|ZP_03396990.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. tomato T1] gi|301384105|ref|ZP_07232523.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato Max13] gi|302059179|ref|ZP_07250720.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato K40] gi|302135017|ref|ZP_07261007.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926452|gb|EEB60006.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. tomato T1] Length = 259 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 125/246 (50%), Gaps = 11/246 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ RI+EIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 +EFL KP F+ + EF++F A + F + D +I+ Sbjct: 68 NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCKIL 127 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187 Query: 185 FKTNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 ++ E + + R R ++ EL EH+ + T+ K A+W Sbjct: 188 GNASDGNGSAEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTIAKATGAPALW 247 Query: 238 DRYISS 243 + + + Sbjct: 248 VQMLEA 253 >gi|212635110|ref|YP_002311635.1| DNA polymerase III subunit epsilon [Shewanella piezotolerans WP3] gi|212556594|gb|ACJ29048.1| DNA polymerase III, epsilon subunit [Shewanella piezotolerans WP3] Length = 242 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 123/246 (50%), Gaps = 16/246 (6%) Query: 2 IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I + R+I+ D ETTG++ RIIEIG VE+++ T R + ++ P + Sbjct: 3 IISSAKRQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVVNRKLTGRHYHEYINP-LQPI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRIN 114 EA+++HGIT+EF+ DKP F I F +F + N + LQ I Sbjct: 62 DEEAIEVHGITNEFVADKPKFHQIAQSFIEFIDGAEIVAHNANFDVSFMDHEFSMLQPIG 121 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +I+D+L+IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ M Sbjct: 122 PKTAEICQILDSLAIAKYLHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILADVYLIM 181 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 G ++ N ++ N R K + +EL H++ + + K+ Sbjct: 182 TGGQTKFNL------SSEKAGQEGGGINRLPKDRAKLKVISASADELTRHEERLDLVAKS 235 Query: 235 --AIWD 238 IW Sbjct: 236 GQCIWR 241 >gi|27479696|gb|AAO17223.1| DnaQ [Photorhabdus luminescens] Length = 248 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 90/249 (36%), Positives = 132/249 (53%), Gaps = 19/249 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R++V D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA ++ Sbjct: 7 RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYIQPD-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI+DEFL+DKP F+ + EF +F I HNA FD+GFI+ E R D Sbjct: 66 HGISDEFLQDKPLFADVADEFVEFIRGAE--LIIHNAPFDIGFIDYEFGKLDRDIPPTAD 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR P RN+L++LC RY I S R+ HGALLD+ +L+DVY+ M Sbjct: 124 FCKITDSLQLARGLFPGKRNNLDALCDRYDIDNSKRTLHGALLDAEILADVYLIMTG--G 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 Q + F + + ++ + T EEL H+ + + K + Sbjct: 182 QTSLAFSMEGEIAGGANVSEIQRVTRSQT-ALKVVYATDEELAAHESRLDLVEKKGGSCL 240 Query: 237 WDRYISSNQ 245 W ISS Q Sbjct: 241 WR--ISSEQ 247 >gi|153825368|ref|ZP_01978035.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2] gi|183179467|ref|ZP_02957678.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3] gi|229524236|ref|ZP_04413641.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis VL426] gi|229528763|ref|ZP_04418153.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)] gi|254225776|ref|ZP_04919381.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51] gi|254286458|ref|ZP_04961415.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226] gi|262192140|ref|ZP_06050301.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93] gi|297580875|ref|ZP_06942800.1| DNA polymerase III [Vibrio cholerae RC385] gi|125621682|gb|EAZ50011.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51] gi|149741052|gb|EDM55121.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2] gi|150423407|gb|EDN15351.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226] gi|183012878|gb|EDT88178.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3] gi|229332537|gb|EEN98023.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)] gi|229337817|gb|EEO02834.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis VL426] gi|262031989|gb|EEY50566.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93] gi|297534701|gb|EFH73537.1| DNA polymerase III [Vibrio cholerae RC385] gi|327484751|gb|AEA79158.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4] Length = 247 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 91/242 (37%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118 +HGITDEFLKDKP + + EF DF +AHNA FDVGF++ E + Sbjct: 70 VHGITDEFLKDKPEYKDVHEEFLDFIKGAE--LVAHNAPFDVGFMDYEFAKLGGAIGKTS 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 + + F T E +R + +EL H + + K+ + Sbjct: 188 TSLQFSSATQNSGELSAESLKRAR---SERKALKVLAASADELQAHQDRLDIVAKSGTCL 244 Query: 237 WD 238 W Sbjct: 245 WR 246 >gi|307730502|ref|YP_003907726.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003] gi|307585037|gb|ADN58435.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003] Length = 244 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 76/237 (32%), Positives = 116/237 (48%), Gaps = 10/237 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRI+E+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I +F DF + L + IID Sbjct: 60 TTEFLSDKPKFAEIADQFRDFIQGADLIIHNAPFDIGFLDAEFALLGLPPVSTYCGEIID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 + V SL + + + EE+ H + L K ++W Sbjct: 180 LGESHAGGEAHAPRVAIESL----ELVVIAASDEEVAAHQAVLDGLDKAIKGTSVWR 232 >gi|300024773|ref|YP_003757384.1| DNA polymerase III subunit epsilon [Hyphomicrobium denitrificans ATCC 51888] gi|299526594|gb|ADJ25063.1| DNA polymerase III, epsilon subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 237 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 97/235 (41%), Positives = 146/235 (62%), Gaps = 5/235 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD K DR+IEIG +E+++ T F F+ P R EA +HGI Sbjct: 1 MREIVLDTETTGLDPKTGDRLIEIGGIEIINRIPTGVEFHRFINPE-RNVPMEAQNVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL KP F ++ +F F + + HNA+FDV F+N EL + + PL R++D Sbjct: 60 STEFLIGKPLFREVYRDFLAFIGDD--ILVIHNAQFDVNFLNHELGLVGEKPLSFDRVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++ARR+HP+ N L++LCKRYGI S R+KHGA++DS LL++VY++++ Q FG Sbjct: 118 TLALARRRHPAGPNSLDALCKRYGIDTSQRTKHGAIVDSLLLAEVYVELLGE-RQATFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 +T E++ + +R +PL +R+T+ +L H I+ +G AIW+R+ Sbjct: 177 QTIGSGAATSERRNGKRAAAKQRPEPLPSRLTEADLVAHRSFIEKMGAKAIWNRF 231 >gi|127513039|ref|YP_001094236.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4] gi|126638334|gb|ABO23977.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4] Length = 242 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 118/246 (47%), Gaps = 16/246 (6%) Query: 2 IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ RIIEIG VE+++ T R F ++ P + Sbjct: 3 IISNAKRQVILDTETTGMNQGAGAVYFGHRIIEIGCVEVINRKLTGRHFHEYINP-MQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRIN 114 EA+ +HGIT+EF+ DKP F+ I F +F + N + L Sbjct: 62 DEEAITVHGITNEFVADKPVFAQIAPAFLEFIDGAEIVAHNANFDVSFMDHEFSLLTPRG 121 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D +++D+L IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ M Sbjct: 122 PKTTDICQVLDSLEIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLIM 181 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 Q F + + N R + +EL+ H++ + + K+ Sbjct: 182 TG--GQTKFELSNEKPGQESGGIIRLAN----NRPSLKVIGASADELNMHEQRLDLVEKS 235 Query: 235 --AIWD 238 IW Sbjct: 236 GQCIWR 241 >gi|295691552|ref|YP_003595245.1| DNA polymerase III subunit epsilon [Caulobacter segnis ATCC 21756] gi|295433455|gb|ADG12627.1| DNA polymerase III, epsilon subunit [Caulobacter segnis ATCC 21756] Length = 237 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 132/235 (56%), Gaps = 9/235 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTG D K DR++EIG +E++D+ T R+F + P R EA K+HG++ Sbjct: 3 REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEYCDP-LRDMPAEAEKVHGLS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 FL KP F I F +F + + +AHNA FD F+N EL++ + P+ R +DT Sbjct: 62 SAFLTGKPKFHEIADRFVEFVGD--SVVVAHNAAFDRQFVNFELEKCGRAPIREDRWVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LCKR+ I++ R KHGAL+D+HLL++VY++ + GG + Sbjct: 120 LAMAKKRFPGMYNSLDALCKRFKISLESRDKHGALIDAHLLAEVYLE-LQGGKERALELT 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWDRY 240 + S R +PL R T E + H + + L A+W ++ Sbjct: 179 HVVETLAVSAAIQG---SYGSRPRPLAPRSTDAEREVHAAWVRKNLKDQALWIKF 230 >gi|227357997|ref|ZP_03842339.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906] gi|227161732|gb|EEI46764.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906] Length = 252 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 132/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPE-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119 HGI+DEFL+D PSF+ I EF + I HNA FD+GF++ E Q++N+D Sbjct: 66 HGISDEFLEDCPSFAEIADEFLAYIRGAE--LIIHNASFDIGFMDYEFQKLNRDIPLTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR P RN+L++LC RY I S R+ HGALLD+ +L+DVY+ M Sbjct: 124 FCQITDSLAMARELFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILADVYLAMTG--G 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 Q F + +++ + I R + + EEL H+ + + K + Sbjct: 182 QTALAFSMEGEPNEEQKGDDIQRIVRPVR-GLRVIKASAEELVAHEARLDLVVKKGGHCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|330882898|gb|EGH17047.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. glycinea str. race 4] Length = 259 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 123/246 (50%), Gaps = 11/246 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 +EFL KP F+ + EF++F A + F + D I+ Sbjct: 68 NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSIL 127 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187 Query: 185 FKTNE---DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 ++ + + R R ++ EL EH+ + T+ K A+W Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGAPALW 247 Query: 238 DRYISS 243 + + + Sbjct: 248 VQMLEA 253 >gi|320325171|gb|EFW81239.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. glycinea str. B076] Length = 259 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 123/246 (50%), Gaps = 11/246 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 +EFL KP F+ + EF++F A + F + D I+ Sbjct: 68 NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSIL 127 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187 Query: 185 FKTNE---DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 ++ + + R R ++ EL EH+ + T+ K A+W Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGAPALW 247 Query: 238 DRYISS 243 + + + Sbjct: 248 VQMLEA 253 >gi|283834499|ref|ZP_06354240.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC 29220] gi|291070049|gb|EFE08158.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC 29220] Length = 245 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 82/242 (33%), Positives = 127/242 (52%), Gaps = 18/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R++V D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQVVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E ++ +D + Sbjct: 69 HGIADEFLLDKPTFAEVADEFLDYIRGAE--LVIHNASFDIGFMDYEFAKLKRDIPKTNE 126 Query: 123 IIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + + +++ T + + K T EEL H+ + + K + Sbjct: 187 TMAFSMEGD----SQQQNDTGIQRIVRQSSKLRVVFATDEELAAHESRLDLVQKKGGSCL 242 Query: 237 WD 238 W Sbjct: 243 WR 244 >gi|323157950|gb|EFZ44052.1| DNA polymerase III, epsilon subunit [Escherichia coli EPECa14] Length = 246 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 84/236 (35%), Positives = 129/236 (54%), Gaps = 14/236 (5%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + F E +++ + + + K T EEL H+ + + K A Sbjct: 184 SMAFAM---EGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVEKKA 236 >gi|153000540|ref|YP_001366221.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185] gi|160875177|ref|YP_001554493.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195] gi|217973494|ref|YP_002358245.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223] gi|151365158|gb|ABS08158.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185] gi|160860699|gb|ABX49233.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195] gi|217498629|gb|ACK46822.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223] gi|315267371|gb|ADT94224.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678] Length = 242 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 121/246 (49%), Gaps = 16/246 (6%) Query: 2 IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ RIIEIG VE+++ T R + ++ P G+ Sbjct: 3 IISNASRQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRIN 114 PEA+ +HGITDE + +P F + +F +F + N + LQ Sbjct: 62 DPEAIAVHGITDERVSKEPRFHQVAQDFINFIDGAEIVAHNANFDVSFMDHEFSLLQPRG 121 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D +I+DTL IA+ HP +N+L++LCKRYG+ S R HGALLD+ +L+DVY+ M Sbjct: 122 PKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYLIM 181 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233 G ++ N + ++ +++ + +EL H++ + + K Sbjct: 182 TGGQTKFNLSNEEAGQEAGGIQRFDPQSLN------LKVIGASADELTMHEQRLDLVAKS 235 Query: 234 -NAIWD 238 +W Sbjct: 236 GKCLWR 241 >gi|57239226|ref|YP_180362.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Welgevonden] gi|57161305|emb|CAH58228.1| DNA polymerase III, epsilon subunit [Ehrlichia ruminantium str. Welgevonden] Length = 242 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 93/241 (38%), Positives = 140/241 (58%), Gaps = 9/241 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M N +R+IV D ETTGLD+ DRIIE+G +EL+D T + F ++ P R A Sbjct: 1 MSYYNGIREIVLDTETTGLDADGGDRIIEMGCIELIDRVFTGKVFHEYINPE-RDIPYYA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGIT + LKDKP FS I +F DF N+ + HNA FD+ FI EL +I K Sbjct: 60 TKIHGITVDMLKDKPKFSEIADKFLDFI--GNSVLVIHNAVFDIKFIKMELDKIQKSYNS 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +++DTL +AR+K P + L++LCKR+ I++ R HGALLD+ LL VY+++M G Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCKRFNISLQDRKFHGALLDATLLGKVYVQLMG-GL 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 Q + F+ N F + + S ++ P ++++EE+ +H ++ + KN IW+ Sbjct: 177 QRSLNFQDNSSMFQSSDYSHDVSRSYIE---PRLYKVSEEEIVKHKMLLEKI-KNPIWNN 232 Query: 240 Y 240 Sbjct: 233 I 233 >gi|157375130|ref|YP_001473730.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157317504|gb|ABV36602.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 242 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 82/242 (33%), Positives = 128/242 (52%), Gaps = 20/242 (8%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+++ D ETTG++ RIIEIG VE+++ T R + ++ P + EA++ Sbjct: 9 RQVILDTETTGMNQGAGAIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QIIDEEAIE 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118 +HGIT+E++ +KP F+ I F DF + AHNA FDV F++ E + Sbjct: 68 VHGITNEYVANKPKFAEISQSFIDFIDGAEVV--AHNASFDVNFMDHEFSLLQPRGPKTA 125 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D +I+DTL IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ M G Sbjct: 126 DICQILDTLDIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLMMTGGQ 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 ++ N + + R R T +EL +H++ + + K+ I Sbjct: 186 TKFNLSGDKAGEGEGGIIRLNSN------RANLKVIRATADELTKHEERLDLVAKSGQCI 239 Query: 237 WD 238 W Sbjct: 240 WR 241 >gi|237730199|ref|ZP_04560680.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2] gi|226905738|gb|EEH91656.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2] Length = 245 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 127/242 (52%), Gaps = 18/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E ++ +D + Sbjct: 69 HGIADEFLLDKPTFADVADEFLDYIRGAE--LVIHNASFDIGFMDYEFAKLKRDIPKTNE 126 Query: 123 IIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + + +++ T + + K T EEL H+ + + K + Sbjct: 187 TMAFSMEGD----SQQQNDTGIQRIVRQSSKLRVVFATDEELAAHESRLDLVQKKGGSCL 242 Query: 237 WD 238 W Sbjct: 243 WR 244 >gi|300312711|ref|YP_003776803.1| DNA polymerase III subunit epsilon [Herbaspirillum seropedicae SmR1] gi|300075496|gb|ADJ64895.1| DNA polymerase III, epsilon subunit, protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 76/237 (32%), Positives = 118/237 (49%), Gaps = 11/237 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL + +RI+EIG VE+L+ + + ++ P R + AL +HG+ Sbjct: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPE-RDSEEGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP+F I +EF D+ L + ++D Sbjct: 60 TTEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L +A+ HP RN L++LC RYGI+ +HR HGALLD+ LL++VY+ M G + + Sbjct: 120 SLQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDL 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 ED E K + L + + ++EEL H+ + L K + +W Sbjct: 180 GAEEDVSEGEGK-----LELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWR 231 >gi|262404569|ref|ZP_06081124.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586] gi|262349601|gb|EEY98739.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586] Length = 247 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 90/242 (37%), Positives = 135/242 (55%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118 +HGITDEFL+DKP + + EF DF +AHNA FDVGF++ E ++ + Sbjct: 70 VHGITDEFLRDKPEYKQVHEEFLDFIKGAE--LVAHNAPFDVGFMDYEFAKLGGSVIKTT 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 + + F T E +R + +EL H + + + K+ + Sbjct: 188 TSLQFSASTQNSGELNAESLKRAR---SERKALKVLHASADELQAHQERLDLVAKSGTCL 244 Query: 237 WD 238 W Sbjct: 245 WR 246 >gi|251792047|ref|YP_003006767.1| DNA polymerase III subunit epsilon [Aggregatibacter aphrophilus NJ8700] gi|247533434|gb|ACS96680.1| DNA polymerase III, epsilon subunit [Aggregatibacter aphrophilus NJ8700] Length = 254 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 79/248 (31%), Positives = 125/248 (50%), Gaps = 12/248 (4%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 I+ ++ R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 3 IQTHQNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVD 61 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA+K+HGITDE L DKP FS I +EF ++ + Sbjct: 62 PEAIKVHGITDEMLADKPDFSQIANEFIEYIKGAELLIHNAPFDVGFMDYEFRKLNLPIK 121 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 D + DTL +AR+ +P +N+L++LC R I S R+ HGALLD+ +L+DVY+ M Sbjct: 122 TNDICTVTDTLVMARQMYPGKKNNLDALCSRLDIDNSKRTLHGALLDAEILADVYLAMTG 181 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--- 233 Q + ++ +D + ++ T+EEL+ H + ++ + K Sbjct: 182 --GQTSLFDESEQDVIQQAVTHHQVKSAVTFSRNLRLLTPTEEELEAHLEYLKLINKKSK 239 Query: 234 -NAIWDRY 240 N +WDR Sbjct: 240 ENCLWDRR 247 >gi|187924850|ref|YP_001896492.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN] gi|187716044|gb|ACD17268.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans PsJN] Length = 244 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 10/237 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRI+E+G VE+++ T ++ P R++ P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARTGDRILELGCVEMVNRRLTGNNLHFYINPE-RESDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I +F DF + + L + IID Sbjct: 60 TTEFLSDKPKFAEIADQFRDFIQDADLIIHNAPFDIGFLDAEFALLGLPPVKTYCGEIID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 V SL + + +EL H + L K ++W Sbjct: 180 LGESHAGGDAHAPRVALSSLD----LIVVTASDDELAAHQAVLDGLDKAIKGTSVWR 232 >gi|289679441|ref|ZP_06500331.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. syringae FF5] gi|330975085|gb|EGH75151.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 259 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 122/246 (49%), Gaps = 11/246 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ RI+EIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 +EFL KP F+ + EF++F A + F + D ++ Sbjct: 68 NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSVL 127 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187 Query: 185 FKTNE---DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237 ++ + + R R ++ EL EH+ + T+ K +W Sbjct: 188 GNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKACGAPPLW 247 Query: 238 DRYISS 243 + + + Sbjct: 248 VQMLEA 253 >gi|251788641|ref|YP_003003362.1| DNA polymerase III subunit epsilon [Dickeya zeae Ech1591] gi|247537262|gb|ACT05883.1| DNA polymerase III, epsilon subunit [Dickeya zeae Ech1591] Length = 244 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 16/242 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYLRPD-RLVDPEAYNI 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLD 119 HGI+DEFL DKP+++ + +F DF + HNA FD+GF++ E + R Sbjct: 66 HGISDEFLVDKPTYADVADDFLDFIRGAE--LVIHNASFDIGFMDYEFRLLGRDIPKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTG--G 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 Q + F + + + + EEL H++ + + K + Sbjct: 182 QTSLAFSMEGEGQQQAVQTETIQRISRPASALAVLYASDEELIAHEQRLDLIMKKGGSCL 241 Query: 237 WD 238 W Sbjct: 242 WR 243 >gi|261868455|ref|YP_003256377.1| DNA polymerase III subunit epsilon [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413787|gb|ACX83158.1| DNA polymerase III, epsilon subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 253 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 13/247 (5%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 I+ N R+IV D ETTG++ + IIEIGAVE+++ T F +++ PN R Sbjct: 3 IQINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPN-RPVD 61 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 P+A+K+HGITDE L DKP FS + ++F ++ + Sbjct: 62 PDAIKVHGITDEMLADKPDFSQVANQFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIK 121 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 D + DTL++AR+ +P +N+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 122 TNDICLVTDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDADILADVYLAMTG 181 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--- 233 G + + F +E + + +++ T+EEL H + ++ + K Sbjct: 182 GQTSL---FDESEPEIIQHAGEQQVQSTVVFSHNLRLLTPTEEELQAHLEYLKLINKKSK 238 Query: 234 -NAIWDR 239 N +W+R Sbjct: 239 DNCLWER 245 >gi|91205177|ref|YP_537532.1| DNA polymerase III subunit epsilon [Rickettsia bellii RML369-C] gi|157827486|ref|YP_001496550.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389] gi|122425898|sp|Q1RJM1|DPO3E_RICBR RecName: Full=DNA polymerase III subunit epsilon gi|91068721|gb|ABE04443.1| DNA polymerase III epsilon chain [Rickettsia bellii RML369-C] gi|157802790|gb|ABV79513.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389] Length = 229 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 129/232 (55%), Gaps = 11/232 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGLD K RI+EIGA+E+++ T R F +L P R EA ++HGI+ Sbjct: 5 REIILDTETTGLDPKGGHRIVEIGAIEMVNKVLTGRHFHFYLNPE-RDMPFEAYRIHGIS 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123 EFLKDKP F +I +F +F + ++ + HNA FDV F+N E L+R L+ Sbjct: 64 GEFLKDKPLFHTIADDFLEFIAD--SKLVIHNAPFDVKFLNHELSLLKRAEIKLLELEHA 121 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +AR P S+ L++LCKR+ + S R HGAL D+ LL++VY+++ G Q F Sbjct: 122 IDTLVMARSMFPGSKYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELTG-GRQSAF 180 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 D+ K + + + TKEEL +H + + + K A Sbjct: 181 KML---DKAAKINNLSYNRLDSQAHRNIPVIKPTKEELQKHKEFLSRVLKQA 229 >gi|15642231|ref|NP_231864.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586228|ref|ZP_01676018.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80] gi|121726541|ref|ZP_01679790.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52] gi|147674786|ref|YP_001217749.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395] gi|153213799|ref|ZP_01949007.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587] gi|153817083|ref|ZP_01969750.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457] gi|153820811|ref|ZP_01973478.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33] gi|227082357|ref|YP_002810908.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2] gi|229507692|ref|ZP_04397197.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286] gi|229512113|ref|ZP_04401592.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33] gi|229519248|ref|ZP_04408691.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9] gi|229607196|ref|YP_002877844.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236] gi|254849364|ref|ZP_05238714.1| DNA polymerase III [Vibrio cholerae MO10] gi|255747069|ref|ZP_05421014.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101] gi|262161386|ref|ZP_06030496.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1] gi|262167744|ref|ZP_06035446.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27] gi|298500392|ref|ZP_07010197.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757] gi|9656792|gb|AAF95377.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549494|gb|EAX59520.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80] gi|121630994|gb|EAX63373.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52] gi|124115723|gb|EAY34543.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587] gi|126512351|gb|EAZ74945.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457] gi|126521603|gb|EAZ78826.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33] gi|146316669|gb|ABQ21208.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395] gi|227010245|gb|ACP06457.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2] gi|227014129|gb|ACP10339.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395] gi|229343937|gb|EEO08912.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9] gi|229352078|gb|EEO17019.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33] gi|229355197|gb|EEO20118.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286] gi|229369851|gb|ACQ60274.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236] gi|254845069|gb|EET23483.1| DNA polymerase III [Vibrio cholerae MO10] gi|255735471|gb|EET90871.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101] gi|262023809|gb|EEY42508.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27] gi|262028697|gb|EEY47351.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1] gi|297541085|gb|EFH77139.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757] Length = 247 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 91/242 (37%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118 +HGITDEFLKDKP + + EF DF +AHNA FDVGF++ E + Sbjct: 70 VHGITDEFLKDKPEYKDVHEEFVDFIKGAE--LVAHNAPFDVGFMDYEFAKLGGAIGKTS 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 + + F T E +R + +EL H + + K+ + Sbjct: 188 TSLQFSSVTQNSGELSAESLKRAR---SERKALKVLAASADELQAHQDRLDIVAKSGTCL 244 Query: 237 WD 238 W Sbjct: 245 WR 246 >gi|30248167|ref|NP_840237.1| DNA polymerase III (epsilon chain) protein [Nitrosomonas europaea ATCC 19718] gi|30180052|emb|CAD84052.1| probable DNA polymerase III (epsilon chain) protein [Nitrosomonas europaea ATCC 19718] Length = 232 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 121/237 (51%), Gaps = 11/237 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR + D ETTGLD RI+EI AVE+ + T+R F +L P GR++ AL++HG+ Sbjct: 1 MRYVFLDTETTGLDPALGHRIVEIAAVEVCNRRLTDRHFHRYLNP-GRESDEGALRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL+DKP F + SEF +F + +L R +IID Sbjct: 60 TREFLRDKPVFQDVCSEFLEFIADAEIFIHNAPFDVGFINRELDLIRFESMQNHCLQIID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +A+ HP RN+L++LC+RY I SHR+ HGALLD+ LL++VY+ M G + Sbjct: 120 TLVLAKELHPGKRNNLDALCERYQIDNSHRTLHGALLDAELLAEVYLAMTRGQESLLMEM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 R P + ++ + T+ EL+ H + ++ + N +W+ Sbjct: 180 DAPASRQADN-----PAVGKVENLALIVQPATQAELELHSRLVERINAESKGNCLWN 231 >gi|330878790|gb|EGH12939.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 259 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 125/246 (50%), Gaps = 11/246 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ RI+EIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 +EFL KP F+ + EF++F A + F + D +I+ Sbjct: 68 NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALIGAQDKADITRHCKIL 127 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187 Query: 185 FKTNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 ++ E + + R R ++ EL EH+ + T+ K A+W Sbjct: 188 GNASDGNGSAEGSSNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTIAKATGAPALW 247 Query: 238 DRYISS 243 + + + Sbjct: 248 VQMLEA 253 >gi|260767799|ref|ZP_05876734.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] gi|260617308|gb|EEX42492.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] Length = 246 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 89/243 (36%), Positives = 133/243 (54%), Gaps = 18/243 (7%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ EA++ Sbjct: 11 RIVVLDTETTGMNLEGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRAIQD-EAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP- 120 +HGITDEFL DKP + + EF DF +AHNA FDVGF++ E +++ Sbjct: 70 VHGITDEFLVDKPEYKDVHEEFLDFIRGAE--LVAHNAPFDVGFMDYEFSKLSIPTAKTD 127 Query: 121 --SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 ELCKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 + + F + E+ K V R R T +E+ H + + K+ + Sbjct: 188 TSLQFSGSSQENGMGAGAIKRVAEG----RKALKVLRATADEIQAHQDRLDIVEKSGTCL 243 Query: 237 WDR 239 W + Sbjct: 244 WRQ 246 >gi|330829021|ref|YP_004391973.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565] gi|328804157|gb|AEB49356.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565] Length = 244 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 83/241 (34%), Positives = 122/241 (50%), Gaps = 13/241 (5%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+I+ D ETTG+++ RIIEIG VE+++ T + V++ P+ R PEA++ Sbjct: 8 RQIILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTGNHYHVYIKPD-RLVDPEAIQ 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGITDEFL+DKPSFS I EF +F +N D Sbjct: 67 VHGITDEFLRDKPSFSQIADEFLEFIRGAELIAHNAPFDVSFMDYEFSKLGLNFKTADIC 126 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 I DTL++AR P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G +++ Sbjct: 127 TITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTKL 186 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 N ++NE+ + T R R E H+ + + K +W Sbjct: 187 NLATESNENEN---NQDTSIRRLESNRPAIKVVRACAEVQALHEARLDLVQKKGGSCLWR 243 Query: 239 R 239 + Sbjct: 244 Q 244 >gi|262170796|ref|ZP_06038474.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451] gi|261891872|gb|EEY37858.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451] Length = 247 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 91/242 (37%), Positives = 135/242 (55%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118 +HGITDEFL+DKP + + EF DF + +AHNA FDVGF++ E + Sbjct: 70 VHGITDEFLRDKPEYKDVHDEFLDFIKDAE--LVAHNAPFDVGFMDYEFAKLGGSVVKTT 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 + + F T E+ S +R + +EL H + + K+ + Sbjct: 188 TSLQFSAATQNS---GEQGAESLKRSRSERKALKVLHASADELQAHQDRLDLVAKSGTCL 244 Query: 237 WD 238 W Sbjct: 245 WR 246 >gi|253988342|ref|YP_003039698.1| DNA polymerase III subunit epsilon [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779792|emb|CAQ82953.1| putative DNA polymerase III epsilon chain [Photorhabdus asymbiotica] Length = 248 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 86/242 (35%), Positives = 127/242 (52%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R++V D ETTG++ + +IIEIGAVE+++ T R F +++ P+ R PEA ++ Sbjct: 7 RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHIYVKPD-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI+DEFL+DKP F+ I EF +F I HNA FD+GF++ E R D Sbjct: 66 HGISDEFLQDKPLFADIADEFIEFIRGAE--LIIHNAPFDIGFMDYEFGKLNRDIPPTTD 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L +AR P RN+L++LC RY I S R+ HGALLD+ +L+DVY+ M Sbjct: 124 FCKVTDSLQLARALFPGKRNNLDALCDRYDIDNSQRTLHGALLDAEILADVYLIMTG--G 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 Q F + V I+ + T EEL H+ + + K + Sbjct: 182 QTALAFSMEGEVSGSANVSEVQRITRPQT-ALKVIYATGEELAAHESRLDLVEKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|153829952|ref|ZP_01982619.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39] gi|148874587|gb|EDL72722.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39] Length = 247 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 91/242 (37%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118 +HGITDEFLKDKP + + EF DF +AHNA FDVGF++ E + Sbjct: 70 VHGITDEFLKDKPEYKDVHEEFLDFIKGAE--LVAHNAPFDVGFMDYEFAKLSGAIGKTS 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 + + F T E +R + +EL H + + K+ + Sbjct: 188 TSLQFSSATQNSGELSAELLKRAR---SERKALKVLAASADELQAHQDRLDIVAKSGTCL 244 Query: 237 WD 238 W Sbjct: 245 WR 246 >gi|153208787|ref|ZP_01947019.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat Q177'] gi|161831371|ref|YP_001596268.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331] gi|165920933|ref|ZP_02219603.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334] gi|120575749|gb|EAX32373.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat Q177'] gi|161763238|gb|ABX78880.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331] gi|165916781|gb|EDR35385.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334] Length = 232 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 127/238 (53%), Gaps = 14/238 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL + RIIEIGA+E+++ T ++ P R +A+++HGI Sbjct: 1 MRQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPE-RSIERDAIEIHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 TD FL DKP F I +E F I HNA FDVGF+N EL+ + K + Sbjct: 60 TDSFLIDKPLFKDIATELISFLKGAE--LIIHNAPFDVGFLNHELKLTGQSFKTLTHYCQ 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL+IAR+KHP N+L++LC+RY + S+R HGALLD+ LL+ VY+ M G + + Sbjct: 118 VLDTLTIARQKHPGQHNNLDALCRRYHVDNSNRDYHGALLDAELLAQVYLLMTGGQTVLF 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWD 238 + F + RD R E + H +Q L +N +W+ Sbjct: 178 -----EQQGFAVASRSVSVRPLGTDRDSLSVIRANAAETEAHRAFLQLLTENGLCLWN 230 >gi|27365234|ref|NP_760762.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6] gi|37680713|ref|NP_935322.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016] gi|320155618|ref|YP_004187997.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O] gi|27361381|gb|AAO10289.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus CMCP6] gi|37199462|dbj|BAC95293.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016] gi|319930930|gb|ADV85794.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O] Length = 243 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 90/243 (37%), Positives = 134/243 (55%), Gaps = 21/243 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ P+A+ Sbjct: 11 RIVVLDTETTGMNREGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPDAID 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPL 118 +HGITD+FL DKP + + EF +F +AHNA FDVGF++ E Sbjct: 70 VHGITDQFLVDKPEYRQVHQEFLEFIKGAE--LVAHNAPFDVGFMDYEFGKLDAAIGKTD 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTG-- 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 Q + F N E+ + V R R T +EL+ H + + K+ + Sbjct: 186 GQTSLEFNANSQEGGGEDIRRVAG-----RKSLKVLRATADELEAHQSRLDIVEKSGTCL 240 Query: 237 WDR 239 W + Sbjct: 241 WRQ 243 >gi|229513876|ref|ZP_04403338.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21] gi|229349057|gb|EEO14014.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21] Length = 247 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 91/242 (37%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118 +HGITDEFLKDKP + + EF DF +AHNA FDVGF++ E + Sbjct: 70 VHGITDEFLKDKPEYKDVHEEFLDFIKGAE--LVAHNAPFDVGFMDYEFAKLGGAIGKTS 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 + + F T E +R + +EL H + + K+ + Sbjct: 188 TSLQFSSVTQNSGELSAESLKRAR---SERKALKVLAASADELQAHQDRLDIVAKSGTCL 244 Query: 237 WD 238 W Sbjct: 245 WR 246 >gi|258621021|ref|ZP_05716055.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573] gi|262166312|ref|ZP_06034049.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223] gi|258586409|gb|EEW11124.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573] gi|262026028|gb|EEY44696.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223] Length = 247 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 90/242 (37%), Positives = 132/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118 +HGITDEFL+DKP + + EF DF +AHNA FDVGF++ E + Sbjct: 70 VHGITDEFLRDKPEYKDVHDEFLDFIKGAE--LVAHNAPFDVGFMDYEFAKLGGSVVKTT 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 + + F T E +R + +EL H + + K+ + Sbjct: 188 TSLQFSAATQNSGELGAESLKRSR---SERKALKVLHASADELQAHQDRLDLVAKSGTCL 244 Query: 237 WD 238 W Sbjct: 245 WR 246 >gi|258627375|ref|ZP_05722159.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603] gi|258580413|gb|EEW05378.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603] Length = 247 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 90/242 (37%), Positives = 133/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118 +HGITDEFL+DKP + + EF DF + +AHNA FDVGF++ E + Sbjct: 70 VHGITDEFLRDKPEYKDVHDEFLDFIKDAE--LVAHNAPFDVGFMDYEFAKLGGSVVKTT 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 + + F T E +R + +EL H + + K+ + Sbjct: 188 TSLQFSAATQNSGELGAESLKRSR---SERKALKVLHASADELQAHQDRLDLVAKSGTCL 244 Query: 237 WD 238 W Sbjct: 245 WR 246 >gi|71733799|ref|YP_273952.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. phaseolicola 1448A] gi|289627521|ref|ZP_06460475.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649928|ref|ZP_06481271.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aesculi str. 2250] gi|298486280|ref|ZP_07004343.1| DNA polymerase III epsilon subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554352|gb|AAZ33563.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|298159287|gb|EFI00345.1| DNA polymerase III epsilon subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868357|gb|EGH03066.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330985658|gb|EGH83761.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012696|gb|EGH92752.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 259 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 123/246 (50%), Gaps = 11/246 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 +EFL KP F+ + EF++F A + F + D I+ Sbjct: 68 NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSIL 127 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187 Query: 185 FKTNE---DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 ++ + + R R ++ EL EH+ + T+ K A+W Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGAPALW 247 Query: 238 DRYISS 243 + + + Sbjct: 248 VQMLEA 253 >gi|311280820|ref|YP_003943051.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae SCF1] gi|308750015|gb|ADO49767.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae SCF1] Length = 246 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 123/242 (50%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFNV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF ++ + HNA FD+GF++ E ++N+ + Sbjct: 69 HGIADEFLLDKPTFADVCDEFLEYIRGAE--LVIHNASFDIGFMDYEFSKLNRGIAKTNT 126 Query: 123 IIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 AR+ P RN L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + + E + K + EEL H+ + + K + Sbjct: 187 SMAFAMEGEAQQTQGE---AGIQRVVRAASKLRVVLASDEELMAHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|220934132|ref|YP_002513031.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219995442|gb|ACL72044.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 235 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 127/240 (52%), Gaps = 9/240 (3%) Query: 2 IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 + N R++V D ETTGL+ + RIIEIG VEL+ T RTF +L P+ R+ AL Sbjct: 1 MSDNNHRQVVLDTETTGLEPAQGHRIIEIGCVELVGRRITRRTFHHYLQPD-REIDEGAL 59 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDP 117 +HGI++EFL DKP F+ + EF +F + HNA FDVGF++ EL+ Sbjct: 60 AVHGISNEFLADKPRFADVVDEFLEFIRGAE--LVIHNAPFDVGFLDHELKLLDAARGQV 117 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D S I+DTL +ARR HP RN L++LCKRY I S R HGALLD+ +L+DVY+ M Sbjct: 118 TDYSSILDTLDLARRMHPGQRNSLDALCKRYQIDNSGRELHGALLDARILADVYLAMTG- 176 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 Q E + R + R ++ EL H + ++ L + W Sbjct: 177 -GQTTLSLGGEAAGVNGEARAESIRRLPEARARLRVIRPSEAELQAHTRLLEKLNPPSPW 235 >gi|237748501|ref|ZP_04578981.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes OXCC13] gi|229379863|gb|EEO29954.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes OXCC13] Length = 247 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 80/238 (33%), Positives = 117/238 (49%), Gaps = 13/238 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL + DRIIEIG VE+L T F ++ P R + P+AL +HG+ Sbjct: 1 MRQIVLDTETTGLYANNGDRIIEIGCVEVLSRHVTENHFHQYINPE-RDSHPDALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I F D+ + K I D Sbjct: 60 TTEFLSDKPKFAEIAQAFCDYIRGAELIIHNAPFDIGFLNAELARLGMPKVEEIAECITD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L AR P RN L++LC+R+ I+ +HR+ HGALLDS LL++VY+ M G + G Sbjct: 120 SLVKARDMFPGRRNSLDALCERFEISNAHRTLHGALLDSELLAEVYLAMTRGQETLEIGG 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-----AIWD 238 + E+ + + NI + + T+EEL H++ + + K+ +W Sbjct: 180 MSIEEEEAAAKAAPLSNIHI------VVLAATEEELARHEEVLDDIEKSNKGAPCVWR 231 >gi|85058570|ref|YP_454272.1| DNA polymerase III subunit epsilon [Sodalis glossinidius str. 'morsitans'] gi|84779090|dbj|BAE73867.1| DNA polymerase III epsilon subunit [Sodalis glossinidius str. 'morsitans'] Length = 252 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 127/242 (52%), Gaps = 15/242 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHFHVYLKPD-RLVDPEAFNV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI+DEFL DKP+F+ + EF F + HNA FD+GF++ E +N+ Sbjct: 66 HGISDEFLADKPTFADVADEFLHFIRGGE--LVIHNAPFDIGFMDYEFGMLNRGIAKTDT 123 Query: 123 IIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 AR+ P RN L++LC RY I S R+ HGALLD+ +L+DV++ M G + Sbjct: 124 FCKVTDSLLLARKMFPGKRNSLDALCDRYLIDNSKRTLHGALLDAEILADVFLLMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + +++ E + + ++ + EE+ H++ + + K + Sbjct: 184 AMRFAMEGEQEQRDVGETVQIQRVQRVQT-SLKVIYASDEEVVAHEQRLDLVQKKGGSCV 242 Query: 237 WD 238 W Sbjct: 243 WR 244 >gi|293390398|ref|ZP_06634732.1| DNA polymerase III, epsilon subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950932|gb|EFE01051.1| DNA polymerase III, epsilon subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 253 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 126/247 (51%), Gaps = 13/247 (5%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 I+ N R+IV D ETTG++ + IIEIGAVE+++ T F +++ PN R Sbjct: 3 IQINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPN-RPVD 61 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 P+A+K+HGITDE L DKP FS +EF ++ + Sbjct: 62 PDAIKVHGITDEMLADKPDFSQAANEFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIK 121 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 D + DTL++AR+ +P +N+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 122 TNDICLVTDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLAMTG 181 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--- 233 G + + F +E + + +++ T+EEL H + ++ + K Sbjct: 182 GQTSL---FDESEPEIIQHAGEQQVQSAVVFSHNLRLLTPTEEELQAHLEYLKLINKKSR 238 Query: 234 -NAIWDR 239 N +W+R Sbjct: 239 DNCLWER 245 >gi|183601084|ref|ZP_02962577.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827] gi|188019425|gb|EDU57465.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827] Length = 253 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 136/244 (55%), Gaps = 18/244 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P+ R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+DEFL+DKP F+ I EF +F I HNA FD+GF++ E ++NKD Sbjct: 66 HGISDEFLQDKPVFADIADEFIEFIRGAE--LIIHNAPFDIGFMDYEFSKLNKDIPPTAD 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR+ P RN+L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCQITDSLVMARQIFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILADVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----A 235 + F + + E+ + + T EEL EH+K + + K Sbjct: 184 SLAFSMEADTSNESYVEEVQRIDRPVS---GLRVLYATDEELIEHEKRLDIVDKKGGKPC 240 Query: 236 IWDR 239 +W + Sbjct: 241 LWRQ 244 >gi|67458568|ref|YP_246192.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2] gi|75536966|sp|Q4UN31|DPO3E_RICFE RecName: Full=DNA polymerase III subunit epsilon gi|67004101|gb|AAY61027.1| DNA polymerase III epsilon chain [Rickettsia felis URRWXCal2] Length = 229 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 134/232 (57%), Gaps = 11/232 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R +A ++HGI+ Sbjct: 5 REIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFDAYRIHGIS 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123 EFLKDKP F +I +F +F ++ ++ I HNA FD+ F+N E L+R L+ S Sbjct: 64 GEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRAEIKLLELSNA 121 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY+++ G Q F Sbjct: 122 IDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELTG-GRQSAF 180 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 D+ + ++ + + TKEEL +H + + ++ K A Sbjct: 181 KMV---DKSVETNNLATNQVNNKTEQATIVIKPTKEELQKHKEFLSSILKTA 229 >gi|296158207|ref|ZP_06841039.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] gi|295891543|gb|EFG71329.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] Length = 244 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 113/237 (47%), Gaps = 10/237 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRI+E+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F I +F DF + + L + IID Sbjct: 60 TTEFLSDKPKFGEIADQFRDFIQGADLIIHNAPFDIGFLDVEFALLGLPPVSTYCGEIID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 120 TLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 V SL + + +E H + L K ++W Sbjct: 180 LGESHAGGDARAPRVAIDSLD----LVVIAASDDEFAAHQAVLDGLDKAIKGTSVWR 232 >gi|58617240|ref|YP_196439.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Gardel] gi|58416852|emb|CAI27965.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Gardel] Length = 242 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 93/241 (38%), Positives = 140/241 (58%), Gaps = 9/241 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M N +R+IV D ETTGLD+ DRIIE+G +EL+D T + F ++ P R A Sbjct: 1 MSYYNGIREIVLDTETTGLDADGGDRIIEMGCIELIDRVFTGKVFHEYINPE-RDIPYYA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGIT + LKDKP FS I +F DF N+ + HNA FD+ FI EL +I K Sbjct: 60 TKIHGITVDMLKDKPKFSEIADKFLDFI--GNSVLVIHNAVFDIKFIKMELDKIQKSYNS 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +++DTL +AR+K P + L++LCKR+ I++ R HGALLD+ LL VY+++M G Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCKRFNISLQDRKFHGALLDATLLGKVYVQLMG-GL 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 Q + F+ N F + + S ++ P ++++EE+ +H ++ + KN IW+ Sbjct: 177 QRSLNFQDNSGMFQSSDYSHDVSRSYIE---PRLYKVSEEEIVKHRMLLEKI-KNPIWNN 232 Query: 240 Y 240 Sbjct: 233 I 233 >gi|229522180|ref|ZP_04411597.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80] gi|229341105|gb|EEO06110.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80] Length = 247 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 91/242 (37%), Positives = 132/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118 +HGITDEFLKDKP + + EF DF +AHNA FDVGF++ E + Sbjct: 70 VHGITDEFLKDKPEYKDVHEEFLDFIKGAE--LVAHNAPFDVGFMDYEFAKLGGAIGKTS 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 + + F T E +R + +EL H ++ + K+ + Sbjct: 188 TSLQFSSVTQNSGELSAESLKRAR---SERKALKVLAASADELQAHQDRLEIVAKSGTCL 244 Query: 237 WD 238 W Sbjct: 245 WR 246 >gi|238799153|ref|ZP_04642606.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969] gi|238716994|gb|EEQ08857.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969] Length = 259 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 133/249 (53%), Gaps = 17/249 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+DEFL DKP+F+ I EF +F I HNA FD+GF++ E + + +D Sbjct: 71 HGISDEFLADKPTFAEITPEFLEFIRGAE--LIIHNAAFDIGFMDYEFRMLQQDIPKTET 128 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + Sbjct: 129 FCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 ++F + ++ + + ++EL H+ + + K + Sbjct: 189 SLSFSMEGDQSQSDSSDDIQRITRPAS---GLKIIYAAEDELAAHESRLDLVMKKGGSCL 245 Query: 237 WDRYISSNQ 245 W + S Sbjct: 246 WRMPLESED 254 >gi|77166266|ref|YP_344791.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani ATCC 19707] gi|254435200|ref|ZP_05048707.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani AFC27] gi|76884580|gb|ABA59261.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani ATCC 19707] gi|207088311|gb|EDZ65583.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani AFC27] Length = 243 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 132/247 (53%), Gaps = 12/247 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K RIIEIG VEL +T RTF +L P R+ ALK+HG+ Sbjct: 1 MRQIILDTETTGLEPKEGHRIIEIGGVELSCRRRTGRTFHCYLNPE-REVDKGALKIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 ++EFL DKP F I EF F + HNA FDVGF++ EL + Sbjct: 60 SNEFLSDKPRFIEIAEEFLAFIEGAE--LVIHNAPFDVGFLDHELCLLGSKWGKISTDCQ 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR++HP +N+L++LCKRYGI S R HGALLD+ +L+ VY+ M G ++ Sbjct: 118 VLDTLQLARQRHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILAGVYLAMTGGQVSLS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 + F+ +S +R R ++EE HD + + K +W Sbjct: 178 LHEYGDNGLPFRVGGGNYRPVS-AERASLTIARASREERMAHDARLTAIDKASGGACLWR 236 Query: 239 RYISSNQ 245 + SS Sbjct: 237 QLDSSPD 243 >gi|157147189|ref|YP_001454508.1| DNA polymerase III subunit epsilon [Citrobacter koseri ATCC BAA-895] gi|157084394|gb|ABV14072.1| hypothetical protein CKO_02968 [Citrobacter koseri ATCC BAA-895] Length = 246 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI DEFL DKP F+ + +F ++ + HNA FD+GF++ E ++++ Sbjct: 69 HGIADEFLLDKPVFADVVDDFLEYIRGAE--LVIHNASFDIGFMDYEFAKLSRGIPKTSE 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++ARR P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKITDSLALARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F E +++ + + + K T EEL H+ + + K + Sbjct: 187 SMAFSM---EGETQQQQGEATIQRIVRQASKLRVVLATDEELMAHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|227329796|ref|ZP_03833820.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 245 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 125/242 (51%), Gaps = 16/242 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI+DEFL DKP+++ I +F DF + HNA FD+GF++ E + +N+D Sbjct: 66 HGISDEFLADKPTYADIVDDFLDFIRGAE--LVIHNATFDIGFMDYEFRLLNRDLPKTET 123 Query: 123 IIDTLS---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M Sbjct: 124 FCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTG--G 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 Q + F + K E + + + EL H++ + + K + Sbjct: 182 QTSLTFSMEGETQQKSENTETIQRIVRPQSALKVLYADEAELLAHEQRLDLIAKKGGSCL 241 Query: 237 WD 238 W Sbjct: 242 WR 243 >gi|293392715|ref|ZP_06637034.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera DSM 4582] gi|291424832|gb|EFE98042.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera DSM 4582] Length = 245 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 125/243 (51%), Gaps = 18/243 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R + V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI+DEFL DKP+F I EF +F + HNA FD+GF++ E + + +D Sbjct: 66 HGISDEFLADKPTFDQIADEFIEFIRGGE--LVIHNAAFDIGFMDHEFRMLQQDIPKTET 123 Query: 123 IIDTLS---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCAITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NA 235 + F + + + + + +E+ H+ + + K N Sbjct: 184 TMAFQMEGDTQQSDSTQDIQRIARPAT---SMKVIYASDDEVVAHESRLDLVAKKGGGNC 240 Query: 236 IWD 238 +W Sbjct: 241 LWR 243 >gi|261211353|ref|ZP_05925641.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341] gi|260839308|gb|EEX65934.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341] Length = 247 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 89/242 (36%), Positives = 132/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118 +HGITDEFL+DKP + + +EF DF +AHNA FDVGF++ E + Sbjct: 70 VHGITDEFLRDKPEYKEVHAEFLDFIKGAE--LVAHNAPFDVGFMDYEFAKLGSSIGKTT 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 + + F + E R +EL H + + + K+ + Sbjct: 188 TSLQFSASSQNSGELGAESLKRAR---SGRKALKVLHANADELQAHQERLDLVAKSGTCL 244 Query: 237 WD 238 W Sbjct: 245 WR 246 >gi|157369157|ref|YP_001477146.1| DNA polymerase III subunit epsilon [Serratia proteamaculans 568] gi|157320921|gb|ABV40018.1| DNA polymerase III, epsilon subunit [Serratia proteamaculans 568] Length = 246 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 18/249 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI R+IV D ETTG++ + RIIEIGA+E+++ T R + V++ P+ R Sbjct: 1 MISTTT-RQIVLDTETTGMNKLGVHYEGHRIIEIGALEVINRRPTGRHYHVYIKPD-RLV 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI+DEFL DKP+F+ I EF DF + HNA FD+GF++ E + + + Sbjct: 59 DPEAYGVHGISDEFLADKPTFAQIADEFIDFIRGGE--LVIHNAAFDIGFMDHEFRMLQQ 116 Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ Sbjct: 117 GIPKTDTFCTITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYL 176 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + + F + + + + + EE+ H+ + + Sbjct: 177 AMTGGQTSMAFQMEGDTQNSNSTQDIQRI---VRPATTMKVVYASDEEVVAHEARLDLVA 233 Query: 233 KN---AIWD 238 K +W Sbjct: 234 KKGGSCLWR 242 >gi|157826195|ref|YP_001493915.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford] gi|157800153|gb|ABV75407.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford] Length = 229 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 133/232 (57%), Gaps = 11/232 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGLD + RI+EI A+E+++ T R F ++ P R +A ++HGI+ Sbjct: 5 REIILDTETTGLDPRQGHRIVEIAAIEMMNKVLTGRNFHFYINPE-RDIPFDAYRIHGIS 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123 EFLKDKP F +I +F +F + ++ + HNA FD+ F+N E L+R L+ S Sbjct: 64 GEFLKDKPLFHTIADDFLEFIAD--SKLVIHNAPFDIKFLNHELSLLKRAEIKLLELSNA 121 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY+++ G Q +F Sbjct: 122 IDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELTG-GRQSSF 180 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 D+ + ++ + + TKEEL +H + + ++ K A Sbjct: 181 KMV---DKSAGINNLAINQVNSKTEQASIVIKPTKEELQKHKEFLSSILKTA 229 >gi|330889978|gb|EGH22639.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. mori str. 301020] Length = 259 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 123/246 (50%), Gaps = 11/246 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 +EFL KP F+ + EF++F A + F + D I+ Sbjct: 68 NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITLHCSIL 127 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187 Query: 185 FKTNE---DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 ++ + + R R ++ EL EH+ + T+ K A+W Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGAPALW 247 Query: 238 DRYISS 243 + + + Sbjct: 248 VQMLEA 253 >gi|319775991|ref|YP_004138479.1| DNA polymerase III subunit epsilon [Haemophilus influenzae F3047] gi|329123857|ref|ZP_08252414.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus aegyptius ATCC 11116] gi|317450582|emb|CBY86799.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3047] gi|327468820|gb|EGF14294.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus aegyptius ATCC 11116] Length = 256 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 128/256 (50%), Gaps = 15/256 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG+ + RIIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMSQLGAHYEGHRIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N +N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFHKLNLNV 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177 Query: 176 VGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 G + + ++ R +E+ ++ + T +EL H + ++ + Sbjct: 178 GGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKMMN 237 Query: 233 K----NAIWDRYISSN 244 K N +WD+ +N Sbjct: 238 KKSGNNCLWDKRFGNN 253 >gi|224824456|ref|ZP_03697563.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] gi|224602949|gb|EEG09125.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] Length = 242 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 110/237 (46%), Gaps = 12/237 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + RIIE +E+++ T R+ +++ P R P+A ++HGI Sbjct: 1 MRQIILDTETTGLEPSQGHRIIEFAGLEMVNRKLTGRSLHLYIHPE-RDIDPDAERVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL DKP F+++ E DF + + I + + +ID Sbjct: 60 SLDFLADKPRFAAVGPEIADFLRDAELIIHNAPFDVGFLNAEFDRIGIERVSTLCASVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR + P RN L++LC R+ I S+R+ HGAL+D LL +VY+ M G + + Sbjct: 120 TLVMARDQFPGKRNSLDALCDRFEIDRSNRTLHGALIDCELLGEVYLWMTRGQNSLVMDI 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 + +R R EEL H + L K +W Sbjct: 180 DLDVGGGADLGALE------FERKPIKILRPNAEELAAHATYLDDLDKAVKGTCLWR 230 >gi|242240256|ref|YP_002988437.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech703] gi|242132313|gb|ACS86615.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech703] Length = 244 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 82/242 (33%), Positives = 131/242 (54%), Gaps = 16/242 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R++V D ETTG++ + RIIEIGAVE+++ T R + V+L P+ R PEA ++ Sbjct: 7 RQVVLDTETTGMNRLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYLKPD-RLVDPEAFQI 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+DEFL D+P+++ I EF +F + HNA FD+GF++ E + +N+D Sbjct: 66 HGISDEFLIDRPAYADIVDEFIEFIRGAE--LVIHNASFDIGFMDYEFRMLNRDIPKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++ARR P RN+L+ LC RY I S R+ HGALLD+ +L++VY+ M Sbjct: 124 FCKITDSLAMARRLFPGKRNNLDVLCTRYQIDNSKRTLHGALLDAEILAEVYLAMTG--G 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 Q + F ++ + + +EL H++ + + K + Sbjct: 182 QTSLAFSSDSEGTQQAVVAEAIQRIARPASALKVIHANDDELMAHEQRLDLVMKKGGSCL 241 Query: 237 WD 238 W Sbjct: 242 WR 243 >gi|330959421|gb|EGH59681.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. maculicola str. ES4326] Length = 259 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 85/255 (33%), Positives = 127/255 (49%), Gaps = 12/255 (4%) Query: 1 MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M+ KN R +V D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ Sbjct: 1 MVDKNGTHRAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKD 116 A+ +HGIT+EFL KP F+ + EF++F A + F + D Sbjct: 60 AIGVHGITNEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGAQDKAD 119 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L++VY+ M Sbjct: 120 ITRHCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILAEVYLAMTG 179 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVP---NISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 G + ++ ++ E + R R ++ EL EH+ + T+ K Sbjct: 180 GQTSLSLAGNASDGNGSGEGGSSRGSEIRRLPADRLPCRVIRASESELAEHEVRMNTIAK 239 Query: 234 N----AIWDRYISSN 244 A+W + + + Sbjct: 240 ASGAPALWVQMLEAE 254 >gi|170726953|ref|YP_001760979.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908] gi|169812300|gb|ACA86884.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908] Length = 242 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 76/240 (31%), Positives = 120/240 (50%), Gaps = 16/240 (6%) Query: 8 RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+I+ D ETTG++ RIIEIG VE+++ T R + ++ P + EA++ Sbjct: 9 RQIILDTETTGMNQGAGAIFLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QIIDEEAIE 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDPLDP 120 +HGIT+EF+ KP F+ + F +F + N + LQ + D Sbjct: 68 VHGITNEFVAHKPKFAEVAQSFIEFIDGAEIVAHNANFDVSFMDHEFSLLQPVGPKTADI 127 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I+DTL IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ M Q Sbjct: 128 CPILDTLEIAKFLHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILADVYLMMTG--GQ 185 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWD 238 F + ++ + + R+K T +EL H++ + + K+ IW Sbjct: 186 TKFNLSSEKEGSESGGIRRLSQ----SRNKLKVITATADELAMHEERLNLVAKSGQCIWR 241 >gi|114332140|ref|YP_748362.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91] gi|114309154|gb|ABI60397.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91] Length = 234 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 78/237 (32%), Positives = 123/237 (51%), Gaps = 11/237 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR + D ETTGLD RI+EI AVE+ + T R F +L P GR++ AL++HG+ Sbjct: 1 MRYVFLDTETTGLDPALGHRIVEIAAVEVCNRRSTGRHFHRYLNP-GRESDEGALRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL+DKP+F I SEF +F + L R+ +I+D Sbjct: 60 SREFLQDKPAFQEICSEFLEFIEDAEILIHNAPFDVGFINRELGLIRLEPMHNYCLQIVD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +A+ HP RN+L++LC+RY I +HR+ HGALLD+ LL++VY+ M G + Sbjct: 120 TLMLAKELHPGKRNNLDALCERYQIDNAHRTLHGALLDAELLAEVYLAMTRGQESLLMEP 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 + E K + + + +++ EL+ HD+ ++ + N +W+ Sbjct: 180 EVPE-----AGKSGDSRLRATENLTLIVQPVSQTELELHDRLLERINTESKGNCLWN 231 >gi|270263405|ref|ZP_06191674.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13] gi|270042289|gb|EFA15384.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13] Length = 246 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 128/249 (51%), Gaps = 18/249 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI R+IV D ETTG++ + RIIEIGAVE+++ T R + V++ P+ R Sbjct: 1 MISTTT-RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPD-RLV 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI+DEFL DKP+F I EF DF + HNA FD+GF++ E + + K Sbjct: 59 DPEAYGVHGISDEFLADKPTFDQIADEFIDFIRGGE--LVIHNASFDIGFMDHEFRMLQK 116 Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ Sbjct: 117 GLPKTDTFCTITDSLLMARRLFPGKRNNLDALCGRYEIDNSKRTLHGALLDAEILAEVYL 176 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + + F + + + + + E+ H+ + + Sbjct: 177 AMTGGQTSMAFQMEGDTQHNDSTQDIQRI---VRPATAMKVVYASDAEVVAHEARLDLVA 233 Query: 233 KN---AIWD 238 K +W Sbjct: 234 KKGGSCLWR 242 >gi|58579186|ref|YP_197398.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Welgevonden] gi|58417812|emb|CAI27016.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Welgevonden] Length = 242 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 92/241 (38%), Positives = 139/241 (57%), Gaps = 9/241 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M N +R+I D ETTGLD+ DRIIE+G +EL+D T + F ++ P R A Sbjct: 1 MSYYNGIREIALDTETTGLDADGGDRIIEMGCIELIDRVFTGKVFHEYINPE-RDIPYYA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGIT + LKDKP FS I +F DF N+ + HNA FD+ FI EL +I K Sbjct: 60 TKIHGITVDMLKDKPKFSEIADKFLDFI--GNSVLVIHNAVFDIKFIKMELDKIQKSYNS 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +++DTL +AR+K P + L++LCKR+ I++ R HGALLD+ LL VY+++M G Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCKRFNISLQDRKFHGALLDATLLGKVYVQLMG-GL 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 Q + F+ N F + + S ++ P ++++EE+ +H ++ + KN IW+ Sbjct: 177 QRSLNFQDNSSMFQSSDYSHDVSRSYIE---PRLYKVSEEEIVKHKMLLEKI-KNPIWNN 232 Query: 240 Y 240 Sbjct: 233 I 233 >gi|157964873|ref|YP_001499697.1| DNA polymerase III subunit epsilon [Rickettsia massiliae MTU5] gi|157844649|gb|ABV85150.1| DNA polymerase III epsilon chain [Rickettsia massiliae MTU5] Length = 229 Score = 138 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 133/232 (57%), Gaps = 11/232 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R EA ++HGI+ Sbjct: 5 REIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGIS 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123 EFLKDKP F +I +F +F ++ ++ I HNA FD+ F+N E L+R L+ + Sbjct: 64 GEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTEIKLLELANT 121 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY+++M G Q F Sbjct: 122 IDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELMG-GRQSAF 180 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 D+ ++ + + TKEEL +H + + + K A Sbjct: 181 KMV---DKSAGINNLATNQVNNQTEQATIVIKPTKEELQKHKEFLSRILKTA 229 >gi|16124261|ref|NP_418825.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15] gi|221232944|ref|YP_002515380.1| DNA polymerase III subunit epsilon [Caulobacter crescentus NA1000] gi|13421091|gb|AAK21993.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15] gi|220962116|gb|ACL93472.1| DNA polymerase III, epsilon chain [Caulobacter crescentus NA1000] Length = 237 Score = 138 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 85/235 (36%), Positives = 132/235 (56%), Gaps = 9/235 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTG D K DR++EIG +E++D+ T R+F + P R EA K+HG++ Sbjct: 3 REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEYCDP-LRDMPAEAEKVHGLS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 FL KP F I F DF + + +AHNA FD F+N EL++ K P+ R +DT Sbjct: 62 SAFLTGKPKFHEIADRFLDFVGD--SVVVAHNAAFDRQFVNFELEKCGKAPIHEERWVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LCKR+ I++ R KHGAL+D+HLL++VY++ + GG + Sbjct: 120 LAMAKKRFPGMYNSLDALCKRFKISLESRDKHGALIDAHLLAEVYLE-LQGGKERALELT 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWDRY 240 + T R +PL R T E + H + + L A+W ++ Sbjct: 179 HSTGAMA---VSTAIQGVYAARSRPLAPRSTDAEREIHAAWVRKNLKDKALWIQF 230 >gi|226939810|ref|YP_002794883.1| DnaQ [Laribacter hongkongensis HLHK9] gi|226714736|gb|ACO73874.1| DnaQ [Laribacter hongkongensis HLHK9] Length = 240 Score = 138 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 13/240 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+ D ETTGLD ++ R+IE+ +E+++ T R +++ P R P+A ++HGI+ Sbjct: 1 MRQIILDTETTGLDPQSHRLIEVAGLEMVNRKLTGRHLHLYIHPQ-RDIDPDAQRVHGIS 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + L+ KP F ++ E DF + + +IDT Sbjct: 60 LDMLEGKPVFKAVAGEIADFLRDAELIIHNAAFDIGFLNAEFARVGLPATQKVAGNVIDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++AR P RN+L++LC R+ I S+R+ HGAL+D LL+DVY+ M G + + Sbjct: 120 LAMAREIFPGKRNNLDALCDRFDIDRSNRTLHGALIDCELLADVYLAMTRGQESLEMAIE 179 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYIS 242 ++ + L R + + ++ E H + ++ L K +W Y Sbjct: 180 PDQGEGG--------TLRLGNRKPLVVQKASEAECAVHSRYLELLDKKAGGPCVWRDYEP 231 >gi|89094533|ref|ZP_01167472.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Oceanospirillum sp. MED92] gi|89081269|gb|EAR60502.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Oceanospirillum sp. MED92] Length = 236 Score = 138 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 78/236 (33%), Positives = 124/236 (52%), Gaps = 11/236 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + IIEIG VE+ + T +T+ ++ P+ R EA+++HGI Sbjct: 1 MRQIVLDTETTGLEPSEGHNIIEIGCVEMFNRRLTGKTYHQYIKPD-RDVDAEAIQVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+EFL+DKP F + EF +F + + + S + D Sbjct: 60 TNEFLEDKPKFHEVMEEFVEFVRGAELIIHNAAFDIGFLDTELDRNGYPERMENFSLVTD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L +AR+KHP +N+L++LC RYGI SHR HGALLDS +L+DVY+ + G + ++ Sbjct: 120 SLKLARKKHPGQKNNLDALCNRYGINNSHRELHGALLDSEILADVYLALTGGQTNLSLAG 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 + ++ K + D +I++ + EHDK ++ L K +W Sbjct: 180 EGDDGEGAGAVIKRLSGA-----DDLPLVQISENDQQEHDKFLKMLDKKSGGECLW 230 >gi|300112990|ref|YP_003759565.1| DNA polymerase III subunit epsilon [Nitrosococcus watsonii C-113] gi|299538927|gb|ADJ27244.1| DNA polymerase III, epsilon subunit [Nitrosococcus watsonii C-113] Length = 243 Score = 138 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 89/244 (36%), Positives = 131/244 (53%), Gaps = 12/244 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K RIIEIG VEL +T +TF +L P R+ ALK+HG+ Sbjct: 1 MRQIILDTETTGLEPKEGHRIIEIGGVELNCRRRTGQTFHCYLNPE-REVDEGALKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 ++EFL DKP F I EF F + HNA FDVGF++ EL + Sbjct: 60 SNEFLSDKPRFIEIAEEFLAFIKGAE--LVIHNAPFDVGFLDHELYLLGSNWGKVSVNCQ 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR++HP +N+L++LCKRYGI S R HGALLD+ +L+ VY+ M G ++ Sbjct: 118 VLDTLQLARQRHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILAGVYLAMTGGQVSLS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 + + + +S +R R ++EE H+ + + K +W Sbjct: 178 LHEYGDNSTSSRSGEGNYRPVS-AERAPLKIARASREEQRAHEACLTAIDKTSAGACVWH 236 Query: 239 RYIS 242 + S Sbjct: 237 QLDS 240 >gi|145589210|ref|YP_001155807.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047616|gb|ABP34243.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 236 Score = 138 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 110/237 (46%), Gaps = 12/237 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+ DR+IEIG VE++D T+RTF ++ P R A +HG+ Sbjct: 1 MRQVILDTETTGLNPATGDRVIEIGCVEVIDRRLTDRTFHYYINPE-RDIDAGAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F +I + +F + L + S++ID Sbjct: 60 SREFLSDKPVFGNIAEQLIEFVDGAEIVIHNAAFDLGFLDNEFALLKRPPFRGLASKVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL AR+ P RN L++LC+R+ I+ HR+ HGALLD+ LL++VYI M G ++ Sbjct: 120 TLLDARQMFPGKRNSLDALCERFSISNKHRTLHGALLDAQLLAEVYIAMTRGQEDLSIDL 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 + ++ H+K + + K+ +W Sbjct: 180 IDYTVGADSSGHMKELPTD------LRVLAASDDDCQLHEKILAEIAKASKKDPVWS 230 >gi|146278706|ref|YP_001168865.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17025] gi|145556947|gb|ABP71560.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17025] Length = 237 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 94/235 (40%), Positives = 135/235 (57%), Gaps = 8/235 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + RI+EIGAVEL ++ T RT+ ++ P R EA ++HG+ Sbjct: 9 MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 67 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL+DKP FS I S F +F E + HNA FD+ F+N EL R+ L R +D Sbjct: 68 GDEFLRDKPVFSEIGSAFLEFVGEAR--LVIHNAAFDMKFLNFELGRVGLPRLPFERALD 125 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR++ P + L++LC+R+G+ S R KHGALLDS +L++VY++++ G Q +FG Sbjct: 126 TLALARKRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELIG-GRQPDFGL 184 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + R L RIT+EE H + LG AIW + Sbjct: 185 SAASGTRSGGAEG---EWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIWLKR 236 >gi|24374102|ref|NP_718145.1| DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1] gi|24348589|gb|AAN55589.1|AE015697_11 DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1] Length = 242 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 118/246 (47%), Gaps = 16/246 (6%) Query: 2 IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ RIIEIG VE+++ T R + ++ P G+ Sbjct: 3 IISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRIN 114 PEA+ +HGITDE + ++P F I EF DF + N + LQ + Sbjct: 62 DPEAIAVHGITDERVANEPRFHQIAQEFIDFISGAEIVAHNANFDVSFMDHEFSLLQPLG 121 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D I+D+L IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ M Sbjct: 122 PKTRDICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVYLSM 181 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233 Q F E + SL + +EL H+K + + K Sbjct: 182 TG--GQTKFNLSNEEVGQEGGGIQRFDPTSL----NLKVICASADELVMHEKRLDLVAKS 235 Query: 234 -NAIWD 238 +W Sbjct: 236 GKCLWR 241 >gi|238921062|ref|YP_002934577.1| DNA polymerase III subunit epsilon [Edwardsiella ictaluri 93-146] gi|238870631|gb|ACR70342.1| DNA polymerase III, epsilon subunit, putative [Edwardsiella ictaluri 93-146] Length = 243 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 86/242 (35%), Positives = 127/242 (52%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPD-RLVDPEAFTV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLD 119 HGI+D+FL DKPSF+ + EF F + HNA FD+GF++ E R Sbjct: 66 HGISDDFLLDKPSFAEVADEFLAFIRGAE--LVIHNAPFDIGFMDYEFAKLGRDLPKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M Sbjct: 124 FCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMTG--G 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 Q F ++ D + + + + + ++ EL H++ + + K + Sbjct: 182 QTLLAFSSDGDGASQSQASEIRRVVRGAK-GLRVVYASEVELAAHEQRLDLVQKKGDSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|217970689|ref|YP_002355923.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|217508016|gb|ACK55027.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 239 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 81/236 (34%), Positives = 120/236 (50%), Gaps = 11/236 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR+IEIG VELLD S T R + V++ P GR EA+ +HGI Sbjct: 1 MRQIVLDTETTGLDWRNGDRVIEIGCVELLDRSLTGRHYHVYINP-GRGIDAEAVAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+EFL DKP F+ I ++F DF + + E K + ++D Sbjct: 60 TEEFLADKPKFADIVADFEDFVRDAELVIHNASFDVGFLDAELERLGRAKLGALCAGVVD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +A+ ++P + L++LC RY I +HR HGALLD+ LL++V++ M G + G Sbjct: 120 TLKLAKEQNPGKKASLDALCDRYEIDNAHRELHGALLDAELLAEVFLAMTRGQESLMIGL 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 + + T + R R + +E HD + + K +W Sbjct: 180 DEEAAPRESDSEGT-----PVLRAAVRVLRASADECAAHDAALADIAKANKGLCLW 230 >gi|271501671|ref|YP_003334697.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech586] gi|270345226|gb|ACZ77991.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech586] Length = 244 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 82/242 (33%), Positives = 126/242 (52%), Gaps = 16/242 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYLRPD-RLIDPEAYNV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLD 119 HGI+DEFL DKP+++ + +F DF + HNA FD+GF++ E + R Sbjct: 66 HGISDEFLADKPTYAEVADDFIDFIRGAE--LVIHNASFDIGFMDYEFRLLGRDIPKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTG--G 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 Q + F + + + + +EL H++ + + K + Sbjct: 182 QTSLAFSMEGESQQQTVQAETIQRISRPTSALTVLYASDDELVAHEQRLDLIMKKGGSCL 241 Query: 237 WD 238 W Sbjct: 242 WR 243 >gi|317047021|ref|YP_004114669.1| DNA polymerase III subunit epsilon [Pantoea sp. At-9b] gi|316948638|gb|ADU68113.1| DNA polymerase III, epsilon subunit [Pantoea sp. At-9b] Length = 243 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 127/249 (51%), Gaps = 18/249 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T F ++L P+ R Sbjct: 1 MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHIYLKPD-RLV 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---ELQR 112 PEA +HGI DEFL DKPSFS I EF D+ + HNA FD+GF++ L+R Sbjct: 59 DPEAFGVHGIADEFLADKPSFSDIADEFLDYIRGAE--LVIHNASFDIGFMDYEFAMLKR 116 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++ D+L++AR+ P RN L++LC R I S R+ HGALLD+ +L++V++ Sbjct: 117 DIGKTDTFCQVTDSLAMARKMFPGKRNSLDALCSRLEIDNSKRTLHGALLDAEILAEVFL 176 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 + G + + F ++ + E + + EE H+ + + Sbjct: 177 TLTGGQTSLAFSMESEQSNQVDGENIQRI---VRPASGLRVVSASDEECLAHESRLDLVM 233 Query: 233 KN---AIWD 238 K +W Sbjct: 234 KKGGSCLWR 242 >gi|291613978|ref|YP_003524135.1| DNA polymerase III, subunit epsilon [Sideroxydans lithotrophicus ES-1] gi|291584090|gb|ADE11748.1| DNA polymerase III, epsilon subunit [Sideroxydans lithotrophicus ES-1] Length = 233 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 130/242 (53%), Gaps = 15/242 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD K RIIE+ A+EL + RTF ++ P R+ A +HG+ Sbjct: 1 MRQIVLDTETTGLDPKQGHRIIEVAAIELNGRKVSERTFHRYINPE-REIDEGAAAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + L+D+P F+ + +F I HNA FD+GF+NAEL + PL + +ID Sbjct: 60 TLDRLQDEPKFAEVAPALLEFIAGAE--LIIHNAPFDIGFLNAELA-LAGLPLLNNPVID 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +A+ HP +N+LN+LC RY + SHR+ HGALLD+ LL++VY+ M G + Sbjct: 117 TLKVAKELHPGKKNNLNALCDRYQVDNSHRTLHGALLDTELLAEVYLGMTRGQESLLGEE 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRYI 241 ++ ED +S+ +++EL H ++ + K + +W R Sbjct: 177 RSEEDGVQFTASGEAICLSV------RVLPASEDELALHRAQLEDIEKASKGSCLWKRLE 230 Query: 242 SS 243 + Sbjct: 231 TQ 232 >gi|294340001|emb|CAZ88365.1| DNA polymerase III subunit epsilon [Thiomonas sp. 3As] Length = 239 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 82/238 (34%), Positives = 130/238 (54%), Gaps = 17/238 (7%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL+ DRIIE+ VEL + T + + +L P+ R + P+ALK+HG+T Sbjct: 3 RQIVLDTETTGLNPASGDRIIEVAGVELFNRRLTGKHYHAYLNPD-RASHPDALKVHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +EFL DKP F+ I + +F + HNA FD F++AEL+R+N+ + T Sbjct: 62 EEFLSDKPRFAQIADDLLEFVRDAEII--IHNAPFDCAFLDAELERLNRPAFKQHVPLVT 119 Query: 127 LS--IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + +A+ + P N+L++LCKR+GI +HR+ HGALLD+ LL++VY+ + G + Sbjct: 120 DTLAMAKLQFPGKFNNLDALCKRFGIDNAHRTLHGALLDAELLAEVYLSLTRGQESLVID 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 +T + + + L L + +E H+ +Q L K +IW Sbjct: 180 LETPQQQMSVASHR-------LDHFSLLVRAPSSDEQAAHEAFLQLLDKKSQGKSIWR 230 >gi|302381472|ref|YP_003817295.1| DNA polymerase III subunit epsilon [Brevundimonas subvibrioides ATCC 15264] gi|302192100|gb|ADK99671.1| DNA polymerase III, epsilon subunit [Brevundimonas subvibrioides ATCC 15264] Length = 247 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 88/240 (36%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG D + DR+IE+G +E+LD T RTF F+ P R +A+++HGIT Sbjct: 3 REIVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPE-RLIPADAIRVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ +KD P F+ I + DF + A IAHNA+FD FI+ E R L +R IDT Sbjct: 62 DDKVKDAPKFAQIVVDLMDFIGD--APVIAHNAQFDRNFIDHECGRCGHPLLHETRWIDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +A+++ P N L++LCKRY I++ R+ HGAL+D+ LL++VY++ + GG + Sbjct: 120 LQLAQKRFPGMANSLDALCKRYKISLVDRTLHGALIDARLLAEVYLE-LKGGKERVLDLS 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWDRYISSNQ 245 + + L R +PL R+ E + H + TL ++W+ Y + Sbjct: 179 SRRESVAAAAHAAAGGYGL--RPRPLAPRLHASEGEAHAAFLAATLKDLSLWEGYGLVAE 236 >gi|253689504|ref|YP_003018694.1| DNA polymerase III, epsilon subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756082|gb|ACT14158.1| DNA polymerase III, epsilon subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 245 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 125/242 (51%), Gaps = 16/242 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNMLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI+DEFL DKP+++ I +F DF + HNA FD+GF++ E + +N+D Sbjct: 66 HGISDEFLADKPTYADIVDDFLDFIRGAE--LVIHNATFDIGFMDYEFRLLNRDLPKTET 123 Query: 123 IIDTLS---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M Sbjct: 124 FCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTG--G 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 Q + F + K E + + + EL H++ + + K + Sbjct: 182 QTSLTFSMEGETQQKNENTETIQRIVRPQSALKVLYADEAELVAHEQRLDLIAKKGGSCL 241 Query: 237 WD 238 W Sbjct: 242 WR 243 >gi|221134302|ref|ZP_03560607.1| DNA polymerase III, epsilon subunit [Glaciecola sp. HTCC2999] Length = 240 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 130/247 (52%), Gaps = 22/247 (8%) Query: 7 MRKIVFDIETTGLDSK-------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 MR+IV D ETTG+ + RIIEIG VEL+D T + V++ P + PEA Sbjct: 1 MRQIVLDTETTGMSRESGEHFTHGHRIIEIGCVELVDRKLTGNHYHVYINPQ-QDIDPEA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 + +HGIT+EFL+DKP F I F DF + + HNA FDVGF++ E L Sbjct: 60 IAVHGITNEFLEDKPLFKEIAQGFIDFIDGAE--LVIHNAPFDVGFMDLEFALNPATALT 117 Query: 119 ---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL +A++ P RN+L++LC+ YGI SHR HGALLD+ +L+DVY+ M Sbjct: 118 RTEKFCTVLDTLVLAKKMRPGQRNNLDALCREYGIDNSHRDLHGALLDAEILADVYLLMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG--- 232 G ++ T F +K P S LK T +EL EH+ + + Sbjct: 178 GGQETLSLETGTKSSSGFDNVEKLAPRTSALK-----IIHATADELTEHESRLDIVEQAS 232 Query: 233 KNAIWDR 239 N ++ + Sbjct: 233 GNCLYRQ 239 >gi|254491084|ref|ZP_05104265.1| DNA polymerase III, epsilon subunit [Methylophaga thiooxidans DMS010] gi|224463597|gb|EEF79865.1| DNA polymerase III, epsilon subunit [Methylophaga thiooxydans DMS010] Length = 245 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 135/245 (55%), Gaps = 14/245 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + R+++ D ETTG+ + + RIIEIG VE+++ T +TF ++ P R A Sbjct: 1 MAELTQKRQVILDTETTGISTADDHRIIEIGCVEMVNRRLTGQTFHQYINPQ-RDIDAGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKD 116 +++HGIT+EFL DKP F+ I EF F + HNA FDVGFIN EL + + Sbjct: 60 IEVHGITNEFLADKPLFTEIAEEFLSFIEGAE--LVIHNAPFDVGFINHELAKLDGETRR 117 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 S ++DTL +AR KHP +N+L++LCKRY + ++R HGALLD+ +L+DVY+ M Sbjct: 118 VETLSTVLDTLKMARDKHPGQKNNLDALCKRYDVNNANRELHGALLDAEILADVYLAMTG 177 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--- 233 G + K + + + I+ LKR+ + + +EL H ++ + K Sbjct: 178 GQVSLTLMAKEDATPKKGDGQA---EITQLKRESLMVLKANDDELAAHQDMLEKVNKASD 234 Query: 234 -NAIW 237 +W Sbjct: 235 GQCVW 239 >gi|309972740|gb|ADO95941.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2846] Length = 255 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 82/255 (32%), Positives = 125/255 (49%), Gaps = 14/255 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N +N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTLGK 233 G + + + ++KT I + T +EL H + ++ + K Sbjct: 178 GGQTNLFDEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKMMNK 237 Query: 234 ----NAIWDRYISSN 244 N +W++ +N Sbjct: 238 KSGNNCLWEKRFGNN 252 >gi|300715435|ref|YP_003740238.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661] gi|299061271|emb|CAX58380.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661] Length = 244 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 17/249 (6%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T + V+L P+ R Sbjct: 1 MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNYHVYLKPD-RLV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---R 112 PEA +HGI DEFL DKP+F+ I F ++ + + HNA FD+GF++ E R Sbjct: 60 DPEAFGVHGIADEFLADKPTFADIADGFLEYIDGAE--LVIHNASFDIGFMDYEFAKLGR 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 RI D+L++AR+ P RN L++LC RY I + R+ HGALLDS +L++V++ Sbjct: 118 NIPKTETFCRITDSLAMARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDSEILAEVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + + F + ++ ++ + + ++ E H++ + + Sbjct: 178 AMTGGQTLLKFSMEGDQQ---QQSNGDTIHRITRPASGLVVLSASEAENMAHEERLDLVM 234 Query: 233 KN---AIWD 238 K +W Sbjct: 235 KKGGSCLWR 243 >gi|254468292|ref|ZP_05081698.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13] gi|207087102|gb|EDZ64385.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13] Length = 219 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 111/227 (48%), Gaps = 10/227 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGLD + RIIEI AVE+++ TN F V++ P R+ A ++HG+ Sbjct: 1 MRQIFLDTETTGLDPAQGHRIIEIAAVEMINRQVTNNQFHVYINPE-REIDEAAQEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F SI +F F + + + I D Sbjct: 60 TLEFLSDKPGFESISEKFISFIADSELIIHNAPFDIGFLNMELGRIKKGVVEDYAEVITD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L +AR P RN+L++LC+ YG+ S R+ HGALLDS LL++V+I M G + F Sbjct: 120 SLVMARELRPGQRNNLDALCRHYGVDNSERNLHGALLDSLLLAEVFIGMTRGQEALEIDF 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 E +K + +K ++EEL+ H + ++ Sbjct: 180 NNQEKLSIDFDKDIL--------NKLKVVSASQEELELHQEYLKKFK 218 >gi|145635316|ref|ZP_01791019.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA] gi|145267460|gb|EDK07461.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA] Length = 255 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 82/255 (32%), Positives = 125/255 (49%), Gaps = 14/255 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N +N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTLGK 233 G + + + ++KT I + T +EL H + ++ + K Sbjct: 178 GGQTNLFDEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKMMNK 237 Query: 234 ----NAIWDRYISSN 244 N +W++ +N Sbjct: 238 KSGNNCLWEKRFGNN 252 >gi|145299712|ref|YP_001142553.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp. salmonicida A449] gi|142852484|gb|ABO90805.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp. salmonicida A449] Length = 244 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 81/241 (33%), Positives = 121/241 (50%), Gaps = 13/241 (5%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+I+ D ETTG+++ RIIEIG VE+++ T + V++ P+ R PEA++ Sbjct: 8 RQIILDTETTGMNTAGGPIYLGHRIIEIGCVEVINRKLTGNHYHVYIKPD-RLVDPEAIQ 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGITD FL DKPSFS I ++F DF +N D Sbjct: 67 VHGITDVFLADKPSFSQIANDFIDFIRGAELIAHNAPFDVSFMDYEFGKLGLNFKTRDIC 126 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 I DTL+IAR P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G +++ Sbjct: 127 SITDTLAIARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTKL 186 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 N +++E + + T R R + H+ + + K +W Sbjct: 187 NLATESSES---ERNQDTSIRRLESNRPPLKVVRAGADIEAVHEARLDLVQKKGGACLWR 243 Query: 239 R 239 + Sbjct: 244 Q 244 >gi|188580742|ref|YP_001924187.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001] gi|179344240|gb|ACB79652.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001] Length = 236 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 89/239 (37%), Positives = 137/239 (57%), Gaps = 10/239 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG D+K DR+IEIG VEL+++ +T + + + P R S A +HGI+ Sbjct: 3 REIVLDTETTGTDAKNGDRLIEIGCVELINHVQTGKFYHQLINPQ-RAVSEGAFAVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSRI 123 D L DKP F+ + F F + + HNA FDVGF+N E + + Sbjct: 62 DAMLADKPVFADVVDAFVAFCGDAR--LVIHNAPFDVGFLNMEFARLGPAAPKAIPLEDV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +ARRKHP + N+L++LC RYG+ + R KHGALLD+ +L++VY++++ G Q + Sbjct: 120 VDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELLG-GKQTSL 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 G E + + + R P+ +R+T+ E HD +++LG NA+W Y+ Sbjct: 179 GLSIAEPTEAIAIESATDSGPVGPR--PMRSRLTESERLRHDSFVESLGTNAVWREYLE 235 >gi|126463657|ref|YP_001044771.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17029] gi|126105321|gb|ABN77999.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17029] Length = 229 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 93/235 (39%), Positives = 137/235 (58%), Gaps = 8/235 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + RI+EIGAVEL ++ T RT+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL+DKP F++I F DF E + HNA FD+ F+N EL R L P + +D Sbjct: 60 GDEFLRDKPVFAAIGRAFLDFVGEAR--LVIHNAAFDMKFLNFELGRSGLPRLAPDQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR++ P + L++LC+R+G+ S R KHGALLDS +L++VY++++ G Q +FG Sbjct: 118 TLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELIG-GRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ++ + R L RIT+EE H + LG AIW + Sbjct: 177 ASSAGARPGSPEG---EWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIWLKR 228 >gi|332559710|ref|ZP_08414032.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides WS8N] gi|332277422|gb|EGJ22737.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides WS8N] Length = 229 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 93/235 (39%), Positives = 137/235 (58%), Gaps = 8/235 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + RI+EIGAVEL ++ T RT+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL+DKP F++I F DF E + HNA FD+ F+N EL R L P + +D Sbjct: 60 GDEFLRDKPVFAAIGRAFLDFVGEAR--LVIHNAVFDMKFLNFELGRAGLPRLAPDQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR++ P + L++LC+R+G+ S R KHGALLDS +L++VY++++ G Q +FG Sbjct: 118 TLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELIG-GRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ++ + R L RIT+EE H + LG AIW + Sbjct: 177 ASSAGARPGSPEG---EWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIWLKR 228 >gi|152968805|ref|YP_001333914.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953654|gb|ABR75684.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 243 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 129/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E ++N+ Sbjct: 66 HGIADEFLLDKPTFADVADEFMDYIRGAE--LVIHNASFDIGFMDYEFSKLNRGIGKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + + E + + + EEL H+ + + K + Sbjct: 184 SMAFSMEGESQQQAGE---MGIQRVVRAGSQLRVVYASDEELANHESRLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|77464814|ref|YP_354318.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Rhodobacter sphaeroides 2.4.1] gi|221640733|ref|YP_002526995.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131] gi|77389232|gb|ABA80417.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Rhodobacter sphaeroides 2.4.1] gi|221161514|gb|ACM02494.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides KD131] Length = 229 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 93/235 (39%), Positives = 137/235 (58%), Gaps = 8/235 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + RI+EIGAVEL ++ T RT+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL+DKP F++I F DF E + HNA FD+ F+N EL R L P + +D Sbjct: 60 GDEFLRDKPVFAAIGRAFLDFVGEAR--LVIHNAAFDMKFLNFELGRAGLPRLAPDQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR++ P + L++LC+R+G+ S R KHGALLDS +L++VY++++ G Q +FG Sbjct: 118 TLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELIG-GRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ++ + R L RIT+EE H + LG AIW + Sbjct: 177 ASSAGARPGSPEG---EWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIWLKR 228 >gi|146282599|ref|YP_001172752.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri A1501] gi|145570804|gb|ABP79910.1| DNA polymerase III, epsilon chain [Pseudomonas stutzeri A1501] gi|327480856|gb|AEA84166.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri DSM 4166] Length = 241 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 116/225 (51%), Gaps = 5/225 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ RIIEIG VE++ T R + V+L P+ R+ A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTDGHRIIEIGCVEVIGRRLTGRHYHVYLQPD-REVDEGAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRI 123 T+EFL DKP F I EF++F + A + F Q+ + D + Sbjct: 60 TNEFLVDKPRFRDIADEFFEFIKDAQLVIHNAAFDLGFINNEFALLGQQDRAEITDHCTV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR +HP RN L++LCKRYG+ S R HGALLD+ +L+DV++ M G + ++ Sbjct: 120 LDTLLMARERHPGQRNSLDALCKRYGVDNSGRDLHGALLDAEILADVWLTMTGGQTNLSL 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 + + + + R + R + EEL H + Sbjct: 180 AGDGESSDGGRPQPSPIRRLP-ADRPRTAVLRASDEELAAHMARM 223 >gi|296135837|ref|YP_003643079.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] gi|295795959|gb|ADG30749.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] Length = 239 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 81/238 (34%), Positives = 128/238 (53%), Gaps = 17/238 (7%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL+ DRIIE+ VEL + T + + +L P+ R + P+ALK+HG+T Sbjct: 3 RQIVLDTETTGLNPASGDRIIEVAGVELFNRRLTGKHYHAYLNPD-RASHPDALKVHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +EFL DKP F I + +F + HNA FD F++AEL+R+N+ + T Sbjct: 62 EEFLSDKPRFEQIADDLLEFVRDAEVI--IHNAPFDCAFLDAELERLNRPAFRQHVPLVT 119 Query: 127 LS--IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + +A+ + P N+L++LCKR+GI +HR+ HGALLD+ LL++VY+ + G + Sbjct: 120 DTLAMAKLQFPGKFNNLDALCKRFGIDNTHRTLHGALLDAELLAEVYLSLTRGQESLVID 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 +T + + + L + +E H+ +Q L K +IW Sbjct: 180 LETPQQQMSVASHR-------LDHFSLPVRAPSSDEQAAHEAFLQLLDKKSQGKSIWR 230 >gi|262044050|ref|ZP_06017130.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330005755|ref|ZP_08305367.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3] gi|259038622|gb|EEW39813.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536123|gb|EGF62511.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3] Length = 246 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 129/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E ++N+ Sbjct: 69 HGIADEFLLDKPTFADVADEFMDYIRGAE--LVIHNASFDIGFMDYEFSKLNRGIGKTET 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + + E + + + EEL H+ + + K + Sbjct: 187 SMAFSMEGESQQQAGE---MGIQRVVRAGSQLRVVYASDEELANHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|94311147|ref|YP_584357.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34] gi|93354999|gb|ABF09088.1| DNA polymerase III epsilon subunit [Cupriavidus metallidurans CH34] Length = 241 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 73/236 (30%), Positives = 113/236 (47%), Gaps = 11/236 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + DR+IEIG VEL++ T R ++ P R +A+ +HGI Sbjct: 1 MRQIVLDTETTGLNHATGDRLIEIGCVELVNRRLTGRHLHFYVNPE-RDIHEDAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T +FL DKP F+ I ++ DF + + + + S +ID Sbjct: 60 TLDFLADKPKFAEIVNDVRDFVQDAELIIHNAPFDLGFLDMEFQRLDLPPFRQHASNVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL AR+ P RN L++LC R G++ SHR+ HGALLD+ LL++VY+ M G + + Sbjct: 120 TLREARQMFPGKRNSLDALCDRLGVSNSHRTLHGALLDAELLAEVYLAMTRGQNSLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237 + + L ++ E+ H ++ L K +W Sbjct: 180 LD-----GAATDGETRSTADLSAMTLPVLLASEAEISAHMGVLKELDKASGGKTVW 230 >gi|86146863|ref|ZP_01065182.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222] gi|85835315|gb|EAQ53454.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222] Length = 255 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 138/247 (55%), Gaps = 21/247 (8%) Query: 4 KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 +NK R +V D ETTG++++ RI+EIGAVE+++ T R F V++ P+ R Sbjct: 19 ENK-RIVVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRRLTGRHFHVYIKPD-RAIQE 76 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-- 115 EA+ +HGITDEFL DKP + I EF DF +AHNA FD GF++ E +++N Sbjct: 77 EAIGVHGITDEFLIDKPEYQDIHKEFLDFIKGAE--LVAHNAPFDTGFMDYEFEKLNPAI 134 Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M Sbjct: 135 GKTDDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLM 194 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233 G + + F +E + + R R T +E++ H + + K Sbjct: 195 TGGQTSLQFN------AGQQEGEGESIRRAESGRKSLKVLRATADEVEAHQSRLDLVEKS 248 Query: 234 -NAIWDR 239 + +W + Sbjct: 249 GSCLWRQ 255 >gi|260913733|ref|ZP_05920209.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella dagmatis ATCC 43325] gi|260632272|gb|EEX50447.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella dagmatis ATCC 43325] Length = 253 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 125/244 (51%), Gaps = 13/244 (5%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T F +++ P+ R P+A+K+ Sbjct: 9 RQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPD-RPVDPDAIKV 67 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGITDE L DKP+F+ I +F ++ + I + + Sbjct: 68 HGITDEMLADKPTFNEIAQQFIEYIQGAELLIHNASFDIGFMDYEFSKLNIGLNTSEICL 127 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I DTL +AR+ +P RN L++LC R GI S R+ HGALLD+ +L+DVY+ M G + + Sbjct: 128 ITDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMTGGQTSL- 186 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 F +E + +++ T++EL H + I+ L K N +W+ Sbjct: 187 --FDESEPEIIVATTQEEVQSAVVFSQDLKKLMPTEDELQAHIEYIKLLNKKSKGNCLWE 244 Query: 239 RYIS 242 + +S Sbjct: 245 KRLS 248 >gi|284009180|emb|CBA76234.1| DNA polymerase III subunit epsilon [Arsenophonus nasoniae] Length = 254 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 86/243 (35%), Positives = 135/243 (55%), Gaps = 18/243 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGIHYEGHNIIEIGAVEVINRRLTGRHFHVYIKP-ARLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119 HGI+DEFL+DKP+F+ I EF DF + HNA FD+GF++ E ++N+D + Sbjct: 66 HGISDEFLQDKPTFAQIADEFLDFIRGAE--LVIHNAPFDIGFMDYEFSKLNRDIPPTAN 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR+ P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M Sbjct: 124 FCQITDSLVLARKLFPGKRNNLDALCDRYHIDNSKRTLHGALLDAEILAEVYMAMTG--G 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----A 235 Q + F + + + + V I + +EE+ H+ + + K + Sbjct: 182 QTSLAFSVDSEPGSEVYRGDVKRIKR-QATGLSVVYANQEEIAAHEARLDLIEKKGGKIS 240 Query: 236 IWD 238 +W Sbjct: 241 LWR 243 >gi|34581277|ref|ZP_00142757.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246] gi|229587086|ref|YP_002845587.1| DNA polymerase III subunit epsilon [Rickettsia africae ESF-5] gi|238650388|ref|YP_002916240.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str. Rustic] gi|28262662|gb|EAA26166.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246] gi|228022136|gb|ACP53844.1| DNA polymerase III epsilon chain [Rickettsia africae ESF-5] gi|238624486|gb|ACR47192.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str. Rustic] Length = 229 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 134/232 (57%), Gaps = 11/232 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R EA ++HGI+ Sbjct: 5 REIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGIS 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123 EFLKDKP F +I +F +F ++ ++ I HNA FD+ F+N E L+R + L+ + Sbjct: 64 GEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTDIKLLELANT 121 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY+++M G Q F Sbjct: 122 IDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELMG-GRQSAF 180 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 D+ ++ + + TKEEL +H + + + K A Sbjct: 181 KMV---DKSAVINNLATNQVNNKTEQTTIVIKPTKEELQKHKEFLSRILKTA 229 >gi|15893035|ref|NP_360749.1| DNA polymerase III subunit epsilon [Rickettsia conorii str. Malish 7] gi|20137858|sp|Q92GL1|DPO3E_RICCN RecName: Full=DNA polymerase III subunit epsilon gi|15620236|gb|AAL03650.1| DNA polymerase III epsilon chain [Rickettsia conorii str. Malish 7] Length = 230 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 134/232 (57%), Gaps = 11/232 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R EA ++HGI+ Sbjct: 5 REIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGIS 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123 EFLKDKP F +I +F +F ++ ++ I HNA FD+ F+N E L+R + L+ + Sbjct: 64 GEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTDIKLLELANT 121 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY+++M G Q F Sbjct: 122 IDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELMG-GRQSAF 180 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 D+ ++ + + TKEEL +H + + + K A Sbjct: 181 KMV---DKSAVINNLATNQVNNKTEQTTIVIKPTKEELQKHKEFLSRILKTA 229 >gi|227112969|ref|ZP_03826625.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 245 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 127/242 (52%), Gaps = 16/242 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNMLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLD 119 HGI+DEFL DKP+++ I +F DF + HNA FD+GF++ E + R Sbjct: 66 HGISDEFLADKPTYADIVDDFLDFIRGAE--LVIHNATFDIGFMDYEFRLLNRDLPKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M Sbjct: 124 FCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTG--G 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 Q + F + K E + + + EL H++ + + K + Sbjct: 182 QTSLTFSMEGETQQKSENTETIQRIVRPQSALTVLYADEAELLAHEQRLDLIAKKGGSCL 241 Query: 237 WD 238 W Sbjct: 242 WR 243 >gi|146307095|ref|YP_001187560.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina ymp] gi|145575296|gb|ABP84828.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp] Length = 252 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 84/253 (33%), Positives = 128/253 (50%), Gaps = 9/253 (3%) Query: 1 MIRKNKM-RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M N + R +V D ETTG+ RIIEIG VELL T R F V+L P+ R+ Sbjct: 1 MTTDNTVNRYVVLDTETTGMPVTDGHRIIEIGCVELLGRRLTGRHFHVYLNPD-REIDEG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKD 116 A+ +HGIT+E++ DKP F + EF++F A + F Q D Sbjct: 60 AIAVHGITNEYVADKPRFRDVADEFYEFIKGAQLIIHNAAFDVGFINNEFALLGQSERAD 119 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 D ++DTL +AR +HP RN L++LCKRYG+ S+R HGALLDS +L+DVY+ M Sbjct: 120 VSDYCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSNRELHGALLDSEILADVYLAMTG 179 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA- 235 G + ++ + + ++ T R + R +++EL H + + K+A Sbjct: 180 GQTHLSLAGEGADSDGSGRQQATPIRRLDAARPRTRVIRASEDELAAHLARLAAIEKSAG 239 Query: 236 ---IWDRYISSNQ 245 +W + + + Sbjct: 240 GPSLWAQLEKAPE 252 >gi|157828957|ref|YP_001495199.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933682|ref|YP_001650471.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str. Iowa] gi|157801438|gb|ABV76691.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908769|gb|ABY73065.1| DNA polymerase III, epsilon chain [Rickettsia rickettsii str. Iowa] Length = 229 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 134/232 (57%), Gaps = 11/232 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R EA ++HGI+ Sbjct: 5 REIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGIS 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123 EFLKDKP F +I +F +F ++ ++ I HNA FD+ F+N E L+R + L+ + Sbjct: 64 GEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTDIKLLELANT 121 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY+++M G Q F Sbjct: 122 IDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELMG-GRQSAF 180 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 D+ ++ + + TKEEL +H + + + K A Sbjct: 181 KMV---DKSAVINNLATNQVNNKTEQTTIVIKPTKEELQKHKEFLSRILKTA 229 >gi|296101380|ref|YP_003611526.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055839|gb|ADF60577.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 243 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 124/242 (51%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E ++ +D + Sbjct: 66 HGIADEFLLDKPTFAEVADEFLDYIKGAE--LVIHNASFDIGFMDYEFSKLQRDIPKTNT 123 Query: 123 IIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 AR+ P RN L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + + E + + + + EEL H+ + + K + Sbjct: 184 SMKFSMENESQQTQGE---AGIQRVVRQASRLRVVLASDEELLNHESRLDLVQKKGGSCM 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|83944955|ref|ZP_00957321.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii HTCC2633] gi|83851737|gb|EAP89592.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii HTCC2633] Length = 236 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 86/231 (37%), Positives = 136/231 (58%), Gaps = 11/231 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+FD ETTGLD + DR+ E+G VE++D T + ++ + P R E + G T Sbjct: 4 REIIFDTETTGLDPRGGDRVTELGCVEVIDLIPTGKDLRILINPE-RDIPAEVTAVTGHT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E LKD+P F+ I +F DF + + +AHNA FD+GFIN EL+R K + +R IDT Sbjct: 63 WEMLKDEPKFAEIVDQFLDFIED--STLVAHNAMFDMGFINMELERCGKPIIPKARFIDT 120 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +IAR K P + L++LCKR+ +++ R+KHGAL+DS+LL++VY++ + GG + + F Sbjct: 121 AAIAREKFPGAPASLDALCKRFDVSLDSRTKHGALIDSYLLAEVYLE-LNGGREQSLSFT 179 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 ++ TV + R K L + +T+ E H + I + + +W Sbjct: 180 GSDG-----GDGTVVYPTRAARPKSLPSLVTERERAAHAEFISEMD-DPLW 224 >gi|163850914|ref|YP_001638957.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens PA1] gi|163662519|gb|ABY29886.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens PA1] Length = 241 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 140/246 (56%), Gaps = 11/246 (4%) Query: 2 IRKNKM-RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 + KM R+IV D ETTG +++ DR+IEIG VEL+++ +T TF + P R S A Sbjct: 1 MESQKMLREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKD 116 +HGI+D L DKP F+ + F +F + + HNA FDVGF+N E Sbjct: 60 FAVHGISDAMLADKPVFAEVVDAFLEFCGDAR--LVIHNAPFDVGFLNMEFARLGPAAPK 117 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + ++DTL +ARRKHP + N+L++LC RYG+ + R KHGALLD+ +L++VY++++ Sbjct: 118 AIALEDVVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELLG 177 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236 G Q + G E + + R P+ +R+T+ E HD +++LG NA+ Sbjct: 178 -GKQTSLGLSIAEPAETVALGALTDSGPVGPR--PIRSRLTEGERLRHDSFVESLGTNAV 234 Query: 237 WDRYIS 242 W Y+ Sbjct: 235 WREYME 240 >gi|32035046|ref|ZP_00135112.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208748|ref|YP_001053973.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae L20] gi|126097540|gb|ABN74368.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 257 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 135/251 (53%), Gaps = 16/251 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKP F+ + EF +F I HNA FDV F++ E + Sbjct: 60 DEEAIKVHGITNEFLQDKPVFAEVADEFIEFIKGAE--LIIHNAPFDVAFMDQEFSYLGN 117 Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + G + + I+ + + +++EE H++ ++ + Sbjct: 178 MMTGGQLAL-LGEEDATATHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236 Query: 233 K----NAIWDR 239 K N IW R Sbjct: 237 KKSKGNCIWMR 247 >gi|238893208|ref|YP_002917942.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae NTUH-K2044] gi|238545524|dbj|BAH61875.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 246 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 129/242 (53%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E ++N+ Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNASFDIGFMDYEFSKLNRGIGKTET 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + + E + + + EEL H+ + + K + Sbjct: 187 SMAFSMEGESQQQAGE---MGIQRVVRAGSQLRVVYASDEELANHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|73541877|ref|YP_296397.1| DNA polymerase III subunit epsilon [Ralstonia eutropha JMP134] gi|72119290|gb|AAZ61553.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134] Length = 240 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 113/236 (47%), Gaps = 11/236 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR+IEIG VEL++ T R ++ P R A+ +HGI Sbjct: 4 MRQIVLDTETTGLNAATGDRLIEIGCVELVNRRLTGRHLHFYVNPE-RDIDEGAIAVHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ + +E DF + + L + +ID Sbjct: 63 TVEFLADKPKFAEVVNEVRDFVQDAELIIHNAQFDLGFLDMEFRLLGLPPFREHVGSVID 122 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL AR+ P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G + + Sbjct: 123 TLLEARQMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLVIDM 182 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237 + + S L ++ E+ EH ++ L K +W Sbjct: 183 LDGAEAADGSVAE-----SDLSHIVLPVLYASEAEVSEHLAVLKQLDKASGGKTVW 233 >gi|91775831|ref|YP_545587.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus KT] gi|91709818|gb|ABE49746.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus KT] Length = 231 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 115/234 (49%), Gaps = 10/234 (4%) Query: 7 MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL ++ RIIEI VEL++ TN F V+L P+ R+ A ++HGI Sbjct: 3 MRQIFLDTETTGLYHAQGHRIIEIAGVELVNRRLTNNHFHVYLNPD-REIDEAAQEVHGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL+DKP F+ I EF F + + IID Sbjct: 62 TLEFLQDKPRFADIVDEFLQFVSGADLIIHNAPFDIGFLNAELNRVGRQNIEHSVLEIID 121 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +A+ P RN+L++LC+ YGI S R+ HGALLD+ LL+DVY+ M G + Sbjct: 122 TLKMAKEMRPGQRNNLDALCRHYGIDNSSRTLHGALLDAELLADVYMAMTRGQESLMIDM 181 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIW 237 + + I L + L ++ EL H++ +Q + K+ +W Sbjct: 182 ------LDQGPIEGSGEIRLTRSKPLLVLTASEAELAAHEEYLQAMSKSGACVW 229 >gi|171463544|ref|YP_001797657.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193082|gb|ACB44043.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 236 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 78/239 (32%), Positives = 126/239 (52%), Gaps = 16/239 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+ DRIIEIG +E++ T+RTF ++ P R A +HG+ Sbjct: 1 MRQVILDTETTGLNPATGDRIIEIGCIEMVGRRLTDRTFHYYINPE-RDIDAGAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 + EFL DKP F++I + +F + + HNA FD+GF++ E + + P S+I Sbjct: 60 SREFLSDKPIFANIVEQLIEFVDGAE--ILIHNAAFDLGFLDNEFALLKRPPFRNLASKI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL AR+ P RN L++LC+R+ I+ HR+ HGALLD+ LL++VY+ M G ++ Sbjct: 118 TDTLLDARQMFPGKRNSLDALCERFSISNKHRTLHGALLDAQLLAEVYVAMTRGQEDLSI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 + + E+L+ H+K + + K+++W Sbjct: 178 DLIDYTVGADSSVHTKALPTN------LKLLSASNEDLESHEKILAEIAKASKKDSVWS 230 >gi|301168790|emb|CBW28381.1| DNA polymerase III epsilon subunit [Haemophilus influenzae 10810] Length = 255 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 83/255 (32%), Positives = 127/255 (49%), Gaps = 14/255 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N +N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + DTL +AR+ +P RN+L++LC+R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCERLGIDNSKRTLHGALLDAEILADVYLMMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTLGK 233 G + + + ++KT I + T +EL H + ++ + K Sbjct: 178 GGQTNLFDEESVESEVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMNK 237 Query: 234 ----NAIWDRYISSN 244 N +WD+ +N Sbjct: 238 KSGNNCLWDKRFGNN 252 >gi|162148736|ref|YP_001603197.1| DNA polymerase III epsilon subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209545498|ref|YP_002277727.1| DNA polymerase III subunit epsilon [Gluconacetobacter diazotrophicus PAl 5] gi|161787313|emb|CAP56907.1| putative DNA polymerase III epsilon subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209533175|gb|ACI53112.1| DNA polymerase III, epsilon subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 226 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 128/232 (55%), Gaps = 10/232 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I+FD ETTGLD + DR+IEI A+EL+ T R F V + P+ R EA ++HG T Sbjct: 3 RAILFDTETTGLDPARGDRVIEIAALELVGDLPTGRHFHVLIHPD-RDIPEEASRVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ KP F I +F F + + IAHNA+FD GF+NAEL+R + L R++DT Sbjct: 62 LADLEGKPRFHEIADDFLAFIGQDD--LIAHNARFDFGFLNAELKRAERPALSLDRMVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L IAR ++P N L++LC+R+ I +S R+ H ALLD LL++VY+++M G Q G Sbjct: 120 LDIARDRYPGLPNSLDALCRRFSIDLSARTTHNALLDCRLLAEVYLELMG-GRQRGLGLT 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + + L P T++EL H + + + K IW Sbjct: 179 VQDGGGAQ----VSYAYDLAGARTPRLIVPTEQELAAHGRFLDKI-KEPIWS 225 >gi|194364623|ref|YP_002027233.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia R551-3] gi|194347427|gb|ACF50550.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia R551-3] Length = 243 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 89/239 (37%), Positives = 126/239 (52%), Gaps = 13/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +RI+EIG VEL T + ++ P+ + A ++ G+ Sbjct: 1 MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDC-EFEQGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 T EFL DKP F+ I EF F + I HNA FD+GF++ EL D Sbjct: 60 TLEFLDDKPDFAQIADEFLAFIDGAE--LIIHNAAFDLGFLDNELSLLGPQYGKITDRCT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDTL +AR + P RN L++LC+R G+ SHR+ HG LLD+ +L DVYI + G +I Sbjct: 118 VIDTLVMARERFPGQRNSLDALCRRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 FG +E + LL R + T EL+ H ++ L K A+WD Sbjct: 178 FGLGDDEAGAAGAALQAFDTSKLLPRPR---VVATPSELEAHTARLERLRKKAGHALWD 233 >gi|295096912|emb|CBK86002.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 246 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 126/242 (52%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL +KP+F+ + EF D+ + HNA FD+GF++ E ++N+D + Sbjct: 69 HGIADEFLLNKPTFADVADEFLDYIRGAE--LVIHNASFDIGFMDYEFSKLNRDIPKTNT 126 Query: 123 IIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 AR+ P RN L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLTMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + + E + + ++ + EEL H+ + + K + Sbjct: 187 SMKFSMENESQQTRDEGGIQRI---VRQANRLRVVLASDEELMNHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|229845439|ref|ZP_04465569.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1] gi|229811635|gb|EEP47334.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1] Length = 256 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 82/256 (32%), Positives = 128/256 (50%), Gaps = 15/256 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F I +F D+ N +N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKEIAQDFLDYINGAELLIHNAPFDVGFMDYEFCKLNLNV 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177 Query: 176 VGGSQINFGFKTNEDRFF---KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 G + + ++ E +E+ ++ + T +EL H + ++ + Sbjct: 178 GGQTNLFDAEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTDDELQAHLELLKMIN 237 Query: 233 K----NAIWDRYISSN 244 K N +WD+ ++ Sbjct: 238 KKSGNNCLWDKRFGND 253 >gi|307545281|ref|YP_003897760.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581] gi|307217305|emb|CBV42575.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581] Length = 255 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 85/245 (34%), Positives = 130/245 (53%), Gaps = 16/245 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTG+D + R+IEIGAVE+++ T T+ ++ P R EA+++HGI Sbjct: 1 MRQIILDTETTGIDPREGHRLIEIGAVEMVNRRLTGNTYHQYINPE-RDIEAEAVEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--------DP 117 T+E + D+P F+ + FW F + HNA FDVGFI+ E R+N+ Sbjct: 60 TNEKVADEPVFAEVADAFWAFIKGAE--LVIHNAPFDVGFIDHEFARLNEARGGPVLGPV 117 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + RI+DTL +AR KHP RN+L++LCKRY I HR HGALLD+ +L+DVY+ M G Sbjct: 118 AEHCRILDTLQLARDKHPGQRNNLDALCKRYEIQNGHRVLHGALLDAEILADVYLAMTGG 177 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGK--- 233 + ++ +D + + L + + + E H + + + Sbjct: 178 QTALSLDASAGDDTEQADNGGGLRIRRLSLSPGQLRVRQPDEAEWQAHRDKLAGIREASG 237 Query: 234 NAIWD 238 WD Sbjct: 238 ECRWD 242 >gi|148979853|ref|ZP_01815731.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3] gi|145961545|gb|EDK26846.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3] Length = 255 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 133/247 (53%), Gaps = 21/247 (8%) Query: 4 KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 +NK R +V D ETTG++++ RI+EIGAVE+++ T R F V++ P+ R Sbjct: 19 ENK-RIVVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYIKPD-RAIQE 76 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RIN 114 EA+ +HGITDEFL DKP + I EF DF +AHNA FD GF++ E + Sbjct: 77 EAIGVHGITDEFLVDKPEYQDIHKEFLDFIKGAE--LVAHNAPFDTGFMDYEFEKLDPTI 134 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D ++ DTL +A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M Sbjct: 135 GKTDDYCKVTDTLDMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLM 194 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233 G + + F +E R R T +E++ H + + K Sbjct: 195 TGGQTSLQFN------AGQQEGGVESIRRVESGRKSLKVLRATADEVEAHQSRLDLVEKS 248 Query: 234 -NAIWDR 239 + +W + Sbjct: 249 GSCLWRQ 255 >gi|322515310|ref|ZP_08068307.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus ureae ATCC 25976] gi|322118686|gb|EFX90898.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus ureae ATCC 25976] Length = 257 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 136/251 (54%), Gaps = 16/251 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKP F+ + EF +F I HNA FDV F++ E + Sbjct: 60 EEEAIKVHGITNEFLQDKPVFAEVADEFIEFIKGAE--LIIHNAPFDVAFMDQEFSYLEN 117 Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEICSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + G + + I+ + + ++++EE H++ ++ + Sbjct: 178 IMTGGQLAL-LGEEDASTNHENITDLGLGTITKFETSGLIVLQLSEEEQAAHEEYLKLID 236 Query: 233 K----NAIWDR 239 K N IW R Sbjct: 237 KKSKGNCIWMR 247 >gi|260581298|ref|ZP_05849115.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW] gi|260092047|gb|EEW75993.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW] Length = 256 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 129/256 (50%), Gaps = 15/256 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N +N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177 Query: 176 VGGSQINFGFKTNED---RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 G + + ++ E R +E+ ++ + T +EL H + ++ + Sbjct: 178 GGQTNLFDEEESVESGVIRVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMN 237 Query: 233 K----NAIWDRYISSN 244 K N +WD+ +N Sbjct: 238 KKSGNNCLWDKRFGNN 253 >gi|148827278|ref|YP_001292031.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG] gi|148718520|gb|ABQ99647.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG] Length = 256 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 81/256 (31%), Positives = 129/256 (50%), Gaps = 15/256 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N +N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + DTL +AR+ +P R++L++LC+R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRSNLDALCERLGIDNSKRTLHGALLDAEILADVYLMMT 177 Query: 176 VGGSQINFGFKTNEDRFF---KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 G + + ++ E +E+ ++ + T +EL H + ++ + Sbjct: 178 GGQTNLFDEEESVESGVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMN 237 Query: 233 K----NAIWDRYISSN 244 K N +WD+ +N Sbjct: 238 KKSGNNCLWDKRFGNN 253 >gi|327392834|dbj|BAK10256.1| DNA polymerase III epsilon subunit DnaQ [Pantoea ananatis AJ13355] Length = 243 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 136/249 (54%), Gaps = 18/249 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T F ++L P+ R Sbjct: 1 MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLV 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QR 112 PEA +HGI DEFL DKP+FS I EF D+ + HNA FD+GF++ E QR Sbjct: 59 DPEAFGVHGIADEFLLDKPTFSDIADEFLDYIRGAE--LVIHNASFDIGFMDYEFGKLQR 116 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + +I D+L++ARR P RN L++LC RY I S R+ HGALLD+ +L++V + Sbjct: 117 GIEKTETFCKITDSLAMARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAEILAEVLL 176 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M Q + F + E+R +++ + + I+ + EE+++H+ + + Sbjct: 177 TMTG--GQTSLSFSSEEERARQQQSEGIQRIAR-PNSGLRVVTASDEEVNQHESRLDLIM 233 Query: 233 KN---AIWD 238 K +W Sbjct: 234 KKGGSCLWR 242 >gi|84389766|ref|ZP_00991318.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01] gi|84376867|gb|EAP93741.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01] Length = 255 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 138/247 (55%), Gaps = 21/247 (8%) Query: 4 KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 +NK R IV D ETTG++++ RI+EIGAVE+++ T R F V++ P+ R Sbjct: 19 ENK-RIIVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRRLTGRHFHVYIKPD-RAIQE 76 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-- 115 EA+ +HGITDEFL DKP + I EF DF +AHNA FD GF++ E +++N Sbjct: 77 EAIGVHGITDEFLIDKPEYQDIHKEFLDFIKGAE--LVAHNAPFDTGFMDYEFEKLNSAI 134 Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M Sbjct: 135 GKTDDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLM 194 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233 G + + F KE + + R R T +E++ H + + K Sbjct: 195 TGGQTSLQFN------AGQKEGEGESIRRAESGRKSLKVLRATADEVEAHQSRLDLVEKS 248 Query: 234 -NAIWDR 239 + +W + Sbjct: 249 GSCLWRQ 255 >gi|218710290|ref|YP_002417911.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32] gi|218323309|emb|CAV19486.1| DNA polymerase III, epsilon subunit [Vibrio splendidus LGP32] Length = 255 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 138/247 (55%), Gaps = 21/247 (8%) Query: 4 KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 +NK R IV D ETTG++++ RI+EIGAVE+++ T R F V++ P+ R Sbjct: 19 ENK-RIIVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYIKPD-RAIQE 76 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-- 115 EA+ +HGITDEFL DKP + I EF DF +AHNA FD GF++ E +++N Sbjct: 77 EAIGVHGITDEFLIDKPEYQDIHKEFLDFIKGAE--LVAHNAPFDTGFMDYEFEKLNPAI 134 Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M Sbjct: 135 GKTDDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLM 194 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233 G + + F +E + + R R T +E++ H + + K Sbjct: 195 TGGQTSLQFN------AGQQEGEGESIRRAESGRKSLKVLRATADEVEAHQSRLDLVEKS 248 Query: 234 -NAIWDR 239 + +W + Sbjct: 249 GSCLWRQ 255 >gi|51473901|ref|YP_067658.1| DNA polymerase III subunit epsilon [Rickettsia typhi str. Wilmington] gi|81826284|sp|Q68W16|DPO3E_RICTY RecName: Full=DNA polymerase III subunit epsilon gi|51460213|gb|AAU04176.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 229 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 89/228 (39%), Positives = 131/228 (57%), Gaps = 11/228 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGLD + RIIEIGA+E+++ T + F ++ P R EA K+HGI+ Sbjct: 5 REIILDTETTGLDPQQGHRIIEIGAIEMVNKVLTGKHFHCYINPE-RDMPFEAYKIHGIS 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123 EFLKDKP F +I ++F F + + I HNA FD+ F+N E L+R L+ + Sbjct: 64 GEFLKDKPLFHTIANDFLKFIAD--STLIIHNAPFDIKFLNHELSLLKRTEIKFLELTNT 121 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +AR P +R L++LCKR+ + S R HGAL D+ LL++VY+ + G Q F Sbjct: 122 IDTLVMARSMFPGARYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVALTG-GRQSTF 180 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 D+ + TV I + K + + + TKEEL +H + I + Sbjct: 181 KMI---DKPNEINNLTVKCIEVQKIKRSIVVKPTKEELQKHKEFIDKI 225 >gi|190150601|ref|YP_001969126.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303252089|ref|ZP_07338258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|189915732|gb|ACE61984.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649071|gb|EFL79258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 257 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 135/251 (53%), Gaps = 16/251 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKP F+ + EF +F I HNA FDV F++ E + Sbjct: 60 DEEAIKVHGITNEFLQDKPVFAEVADEFIEFIKGAE--LIIHNAPFDVAFMDQEFSYLEN 117 Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + G + + I+ + + +++EE H++ ++ + Sbjct: 178 MMTGGQLAL-LGEEDATATHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236 Query: 233 K----NAIWDR 239 K N IW R Sbjct: 237 KKSKGNCIWMR 247 >gi|58040389|ref|YP_192353.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H] gi|58002803|gb|AAW61697.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H] Length = 228 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 93/234 (39%), Positives = 127/234 (54%), Gaps = 11/234 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I+FD ETTG D DRIIEI A+EL+D T + V + P R EA K+HG Sbjct: 3 RSILFDTETTGFDPDMGDRIIEIAALELIDDLPTGEAYHVLIHPE-RDIPAEATKVHGFR 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 E L+ KP FS + F +F + AHNA+FD F+NAEL+ ++PLD SR ID Sbjct: 62 IEDLEGKPIFSEVADGFLEFIGDSPMI--AHNARFDFKFVNAELKACGREPLDYASRAID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +AR+K+P L++LC+R+GI +S R H ALLD LL++VY+++M G Q G Sbjct: 120 TVEMARKKYPGLPASLDALCRRFGIDLSQRGTHNALLDCKLLAEVYVELMG-GRQRGLGL 178 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 E L R T EEL H+ + T+ K+A+W R Sbjct: 179 AGPSRSRSMTEGINA----LANRKPRKMAPPTAEELQAHEAFVSTI-KDAVWLR 227 >gi|58584800|ref|YP_198373.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419116|gb|AAW71131.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 231 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 90/240 (37%), Positives = 138/240 (57%), Gaps = 11/240 (4%) Query: 4 KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +NK+R+IV D ETTGLD + RIIEIG VEL++ T + F +L P R + K+ Sbjct: 2 ENKLREIVLDTETTGLDIESGHRIIEIGCVELINRIPTGKVFHKYLNPE-RDIPYHSFKI 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI++EFL+DKP FS + EF DF + I HNA+FD+ F+N EL ++N + R Sbjct: 61 HGISEEFLEDKPLFSDVVFEFLDFISG--DILIIHNAEFDIKFLNMELGKLNARLISSDR 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+K S L++LCKR+ I++ +R HGAL D+ LL+ VY+++ G Sbjct: 119 VLDTLPLARKKFVGSPASLSALCKRFDISLENRELHGALTDAGLLAKVYVELTGGLQTFL 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 F + +D + V N++ + + EE++EH K + + N +W I Sbjct: 179 FDNECKQDHNSAFIQHKVRNLTCRE------HSPSNEEINEHRKLLGKID-NPLWKERIE 231 >gi|121997071|ref|YP_001001858.1| DNA polymerase III subunit epsilon [Halorhodospira halophila SL1] gi|121588476|gb|ABM61056.1| DNA polymerase III, epsilon subunit [Halorhodospira halophila SL1] Length = 243 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 88/240 (36%), Positives = 127/240 (52%), Gaps = 16/240 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTG+D + RIIEIG VEL+ T F +L P+ R A +HG+ Sbjct: 1 MRQILLDTETTGMDPTEGHRIIEIGCVELVRRRLTGNNFHEYLNPD-RAVDEGAENVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122 ++ FL DKP F+ I F D+ + I HNA FDVGFI+AEL R+ D Sbjct: 60 SNRFLADKPRFADIARRFVDYVQDAE--LIIHNAPFDVGFIDAELARLGPAWGQLEDYCT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I D+L +ARR HP R L++LCKRY + S R HGALLDS LL++VY+ M G +++ Sbjct: 118 ITDSLQMARRMHPGQRCSLDALCKRYSVDGSRRELHGALLDSELLAEVYLAMTGGQGKLS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 + E + ++ R + + E + H++ +Q + G A+W Sbjct: 178 LEGEGLEPGGAEPVQRLSAE-----RPRLRVPEPGELEREAHEQLLQRIEATCGGPALWR 232 >gi|220921281|ref|YP_002496582.1| DNA polymerase III subunit epsilon [Methylobacterium nodulans ORS 2060] gi|219945887|gb|ACL56279.1| DNA polymerase III, epsilon subunit [Methylobacterium nodulans ORS 2060] Length = 238 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 98/238 (41%), Positives = 142/238 (59%), Gaps = 10/238 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R+IV D ETTG D+K DR+IEIG +ELL++ T R F ++ P R S A +HG++D Sbjct: 3 REIVLDTETTGTDAKTDRLIEIGGIELLNHIPTGREFHRYINPQ-RAVSQGAFAVHGLSD 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSRII 124 FL DKP F+ I +F DF + HNA FDVGF+NAE R P++ S ++ Sbjct: 62 AFLADKPLFAEILPDFLDFCGDATFV--IHNAAFDVGFLNAEYARLGETAPPPIELSAVV 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++ARRKHP++ N+L++LC RYGI S R+KHGALLD+ +L++VYI+++ G Q + G Sbjct: 120 DTLALARRKHPNAANNLDALCARYGIDNSRRTKHGALLDAQILAEVYIELLG-GKQTSLG 178 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + ++ P + + +R+T E H +LG NA+W YI Sbjct: 179 LTLEAASIVRVTQEAGPVAHG---PRSVRSRLTDAERTAHAAFTASLGANAVWRDYIG 233 >gi|288549963|ref|ZP_05968783.2| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC 35316] gi|288316782|gb|EFC55720.1| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC 35316] Length = 246 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 126/242 (52%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF ++ + HNA FD+GF++ E ++N+D + Sbjct: 69 HGIADEFLLDKPTFADVADEFLEYIKGAE--LVIHNASFDIGFMDYEFSKLNRDIPKTNT 126 Query: 123 IIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ARR P RN L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKVTDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLTMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + + E + + + + EEL +H+ + + K + Sbjct: 187 SMKFSMENESQQSQGE---AGIQRLVRQASRLRVVHASDEELLKHESRLDLVQKKGGSCM 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|15601971|ref|NP_245043.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp. multocida str. Pm70] gi|31563219|sp|Q9CPE0|DPO3E_PASMU RecName: Full=DNA polymerase III subunit epsilon gi|12720318|gb|AAK02190.1| DnaQ [Pasteurella multocida subsp. multocida str. Pm70] Length = 253 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 76/244 (31%), Positives = 120/244 (49%), Gaps = 13/244 (5%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T F +++ PN R P+A+K+ Sbjct: 9 RQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPN-RPVDPDAIKV 67 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGITDE L DKP F+ + +F D+ + +N + Sbjct: 68 HGITDEMLADKPMFNEVAQQFIDYIQGAELLIHNAPFDVGFMDYEFKKLNLNINTDAICM 127 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL +AR+ +P RN L++LC R GI S R+ HGALLD+ +L+DVY+ M G + + Sbjct: 128 VTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMTGGQTSL- 186 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 F NE + ++ + +EL H + L K N +W+ Sbjct: 187 --FDENEPEIAVVAVQEQIQSAVAFSQDLKRLQPNADELQAHLDYLLLLNKKSKGNCLWE 244 Query: 239 RYIS 242 + ++ Sbjct: 245 KRLA 248 >gi|206577790|ref|YP_002240302.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342] gi|290509928|ref|ZP_06549298.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55] gi|206566848|gb|ACI08624.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342] gi|289776644|gb|EFD84642.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55] Length = 243 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 126/242 (52%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E R Sbjct: 66 HGIADEFLLDKPTFADVADEFMDYIRGAE--LVIHNASFDIGFMDYEFGKLNRGIGKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + + E + + + EEL H+ + + K + Sbjct: 184 SMAFSMEGESQQQAGE---MGIQRVVRAASQLRVVYASDEELVNHESRLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|290476066|ref|YP_003468963.1| DNA polymerase III subunit epsilon [Xenorhabdus bovienii SS-2004] gi|289175396|emb|CBJ82199.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Xenorhabdus bovienii SS-2004] Length = 249 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F +++ P R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRHFHLYIKPE-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+DEFL+DKP+F+ I EF +F I HNA FD+GF++ E +++N+D Sbjct: 66 HGISDEFLQDKPTFADIADEFIEFIRGAE--LIIHNATFDIGFMDYEFRKLNRDIPPTAD 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +AR+ P RN+LN+LC RY I S R+ HGALLD+ +LSDVY+ M G + Sbjct: 124 FCTITDSLVLARQLFPGKRNNLNALCDRYQIDNSKRTLHGALLDAEILSDVYLTMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + + + + EEL +H+ + + K + Sbjct: 184 SLTFSMEGEISGGAQMAEIQKITRPQT---GLKVIYASDEELLQHESRLDLVEKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|239947177|ref|ZP_04698930.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239921453|gb|EER21477.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 240 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 130/228 (57%), Gaps = 11/228 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R EA ++HGI+ Sbjct: 16 REIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRMHGIS 74 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123 EFLKDKP F +I +F +F + ++ I HNA FD+ F+N E L+R L+ + Sbjct: 75 GEFLKDKPLFHTIADDFLEFIAD--SKLIIHNAPFDIKFLNHELSLLKRAEIKLLELANT 132 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY+++M G Q F Sbjct: 133 IDTLVMARSMFPGSKYNLDALCKRFKVDNSSRQLHGALKDAALLAEVYVELMG-GRQSAF 191 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 D+ ++ + + TKEEL +H + I + Sbjct: 192 KMV---DKSAGINNLVTNQVNNKTEQATIVIKPTKEELQKHKEFINKI 236 >gi|307246199|ref|ZP_07528280.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255179|ref|ZP_07536997.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259617|ref|ZP_07541341.1| hypothetical protein appser11_14150 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852808|gb|EFM85032.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862052|gb|EFM94028.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866262|gb|EFM98126.1| hypothetical protein appser11_14150 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 257 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 135/251 (53%), Gaps = 16/251 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKP F+ + EF +F I HNA FDV F++ E + Sbjct: 60 EEEAIKVHGITNEFLQDKPVFAEVADEFIEFIKGAE--LIIHNAPFDVAFMDQEFSYLEN 117 Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + G + + I+ + + +++EE H++ ++ + Sbjct: 178 MMTGGQLAL-LGEEDATSNHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236 Query: 233 K----NAIWDR 239 K N IW R Sbjct: 237 KKSKGNCIWMR 247 >gi|288937007|ref|YP_003441066.1| DNA polymerase III subunit epsilon [Klebsiella variicola At-22] gi|288891716|gb|ADC60034.1| DNA polymerase III, epsilon subunit [Klebsiella variicola At-22] Length = 246 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 126/242 (52%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E R Sbjct: 69 HGIADEFLLDKPTFADVADEFMDYIRGAE--LVIHNASFDIGFMDYEFGKLNRGIGKTET 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + + E + + + EEL H+ + + K + Sbjct: 187 SMAFSMEGESQQQAGE---MGIQRVVRAASQLRVVYASDEELVNHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|163732957|ref|ZP_02140401.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149] gi|161393492|gb|EDQ17817.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149] Length = 228 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 95/234 (40%), Positives = 147/234 (62%), Gaps = 8/234 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL+ + T +T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGKTYHQYINPE-RMMPDEAFQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL+DKP F+ + F DF + A+ + HNA FD+ F+NAEL+ +N + + ID Sbjct: 60 GDEFLRDKPKFAEVGQAFLDFIGD--AKLVIHNAAFDIKFLNAELKWMNLPQIPWEQAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR++ P S L++LC+R+GI + R+ HGALLDS +L++VY++++ G Q +FG Sbjct: 118 TLAIARKRFPGSPASLDALCRRFGIDNASRTLHGALLDSEILAEVYLELIG-GRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + K T + + R PL +R+T+EE H + + LG +A+W + Sbjct: 177 S---NIPQKSAGDTSVDWTPRPRPTPLPSRMTEEEAAAHAEFVAKLGDDAVWLK 227 >gi|254429095|ref|ZP_05042802.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881] gi|196195264|gb|EDX90223.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881] Length = 246 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 85/239 (35%), Positives = 132/239 (55%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTGL+ R+IEIG VE+ + T ++L P R+ AL +HGI Sbjct: 1 MRQVVLDTETTGLEPNDGHRVIEIGCVEMENRRLTGNNLHLYLNPE-REIDAGALAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSR 122 + EFL DKP+F + EF F + + HNA FDVGF+N EL+R Sbjct: 60 STEFLADKPTFDKVVDEFLAFVDGAE--LVIHNAPFDVGFLNHELRRLGARYGTIEQRCG 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+KHP +N+L++LC+RY + HR HGALLD+ +L+DVY+ M G ++++ Sbjct: 118 VLDTLVMARQKHPGQKNNLDALCRRYFVENGHRELHGALLDAEILADVYLAMTGGQTRLS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-GKN---AIW 237 G ++ + + +S R R ++ E+ H+ + + GKN +W Sbjct: 178 LGGNDGSEQGGDATAEAIRRLS-ADRPALAVVRPSESEMQRHNDKLTAIAGKNGEPTVW 235 >gi|219871037|ref|YP_002475412.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165] gi|219691241|gb|ACL32464.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165] Length = 256 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 88/256 (34%), Positives = 137/256 (53%), Gaps = 17/256 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG++ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQQILRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+++HGIT+E L DKP+F+ I EF +F I HNA FDVGFI+ E + Sbjct: 60 DAEAMQVHGITNEMLADKPAFAEIADEFIEFIKGAE--LIIHNAPFDVGFIDHEFSFLPN 117 Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + D+L +AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPEKVAQMCTVTDSLQLARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M QI + ++ + V + + ++EL EH K ++ + Sbjct: 178 MMTG--GQIALIGEDEHEQVKTSSAEQVYQPLTIDTSNLIVLAPDEKELAEHLKYLELIN 235 Query: 233 K----NAIWDRYISSN 244 K N +W R +++ Sbjct: 236 KKSKGNCLWTRELATE 251 >gi|152978551|ref|YP_001344180.1| DNA polymerase III subunit epsilon [Actinobacillus succinogenes 130Z] gi|150840274|gb|ABR74245.1| DNA polymerase III, epsilon subunit [Actinobacillus succinogenes 130Z] Length = 259 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 86/254 (33%), Positives = 129/254 (50%), Gaps = 11/254 (4%) Query: 1 MIRKN-KMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 M +N +R+IV D ETTG++ + IIEIGAVEL++ T R +++ P+ R Sbjct: 1 MKEENEIIRQIVLDTETTGMNQFGAHYEGHCIIEIGAVELINRKYTGRKLHLYVKPD-RP 59 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 PEA+K+HGITDE L DKP FS++ EF DF + I+ Sbjct: 60 IDPEAIKVHGITDEMLADKPDFSTVAQEFIDFIKDAELLIHNAPFDVGFMDYEFRKHHID 119 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D + DTL +ARR++P RN+L++LC R I S R+ HGALLD+ +L DVY+ M Sbjct: 120 IKTADICTVTDTLQMARRQYPGKRNNLDALCDRLHIDNSKRTLHGALLDAEILGDVYLAM 179 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233 G + +T EE + + + + +T+EEL H + + + K Sbjct: 180 TGGQVSLFAEEETEISVQKTEEIEEEFIPVQVSSEGLIALPLTEEELAAHTEYLSLINKK 239 Query: 234 ---NAIWDRYISSN 244 N IW + +S + Sbjct: 240 SKDNCIWIKRLSPD 253 >gi|71907224|ref|YP_284811.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Dechloromonas aromatica RCB] gi|71846845|gb|AAZ46341.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Dechloromonas aromatica RCB] Length = 238 Score = 135 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 110/236 (46%), Gaps = 12/236 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + RIIE+ +E+++ T ++ P R+ A +HGI Sbjct: 1 MRQIVLDTETTGLDPRSGHRIIEVACIEMVNRRFTGHHLHKYINPE-REIDEGAQAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I EF +F N + + +ID Sbjct: 60 TLEFLADKPKFADIADEFLEFINGAELIIHNAPFDIGFLNAELDRLGRVPVGTICNGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +A+ HP RN L++LC+RY I S R+ HGALLD+ LL+DV++ M G + + Sbjct: 120 TLRMAKELHPGKRNSLDALCERYEIDNSSRTLHGALLDTELLADVFLAMTRGQNSLMIEP 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 + + + +R R EE+ EH+ + + K IW Sbjct: 180 DAEPRPNIGADGQ------VRERKPLSVRRAAPEEIAEHETVLAAIDKESKGACIW 229 >gi|165976701|ref|YP_001652294.1| DNA polymerase III epsilon chain [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876802|gb|ABY69850.1| DNA polymerase III epsilon chain [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 257 Score = 135 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 85/251 (33%), Positives = 135/251 (53%), Gaps = 16/251 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+D+P F+ + EF +F I HNA FDV F++ E + Sbjct: 60 EEEAIKVHGITNEFLQDRPVFAEVADEFIEFIKGAE--LIIHNAPFDVAFMDQEFSYLEN 117 Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + G + + I+ + + +++EE H++ ++ + Sbjct: 178 MMTGGQLAL-LGEEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236 Query: 233 K----NAIWDR 239 K N IW R Sbjct: 237 KKSKGNCIWMR 247 >gi|255065954|ref|ZP_05317809.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256] gi|255049865|gb|EET45329.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256] Length = 255 Score = 135 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 72/250 (28%), Positives = 120/250 (48%), Gaps = 17/250 (6%) Query: 2 IRKNKM--RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 I+K M R+I+ D ETTGL ++ DR++E +E+++ T +++ P R E Sbjct: 11 IQKIPMSKRQIILDTETTGLYAEGGDRLVEFAGLEMINRQITGNNLHLYVHPE-RDMPEE 69 Query: 59 --ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + I K+ P F+ + + DF + I HNAKFDVGF+N E +R+ Sbjct: 70 AAKVHGLTIEVLEEKNAPPFAEVGRQIADFIRDAE--LIIHNAKFDVGFLNMEFRRMGLP 127 Query: 117 PLDP--SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++ + DTL++AR P + L++LC R + S R HGAL+D LL +VY+ M Sbjct: 128 SIEELGCTVTDTLAMAREMFPGQKASLDALCNRLSVDRSKRVLHGALIDCELLGEVYLAM 187 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGK 233 F ++E+ I+ KR + EEL H++ + LG+ Sbjct: 188 TRQQ------FDLMGGEKEEDEEVKPVIIAETKRPAHLKVIKANAEELAAHEQYLDGLGE 241 Query: 234 NAIWDRYISS 243 +W + ++ Sbjct: 242 ACLWRKAETA 251 >gi|110834086|ref|YP_692945.1| DNA polymerase III subunit epsilon [Alcanivorax borkumensis SK2] gi|110647197|emb|CAL16673.1| DNA polymerase III, epsilon subunit [Alcanivorax borkumensis SK2] Length = 247 Score = 135 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 85/239 (35%), Positives = 129/239 (53%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTGL+ R+IEIG VE+ + T + ++L P R+ AL +HGI Sbjct: 1 MRQVVLDTETTGLEPNDGHRVIEIGCVEMENRRLTGNSLHLYLNPE-REIDAGALAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSR 122 + EFL DKP+F + EF F + + HNA FDVGF+N EL+R Sbjct: 60 SSEFLADKPTFDKVVDEFLAFVDGAE--LVIHNAPFDVGFLNHELRRLGTRYGTIEQRCG 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+KHP +N L++LC+RY + HR HGALLD+ +L+DVY+ M G +++ Sbjct: 118 VLDTLVMARQKHPGQKNSLDALCRRYFVENGHRELHGALLDAEILADVYLAMTGGQTRLF 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 G + +R +T+ +S R R ++ E H + + K +W Sbjct: 178 SGGNDSSERGGGAAAETIRRLS-ADRVPLCVVRASENEQQRHRNKLAAIAKKNGVPTVW 235 >gi|285017397|ref|YP_003375108.1| DNA polymerase III, epsilon subunit protein [Xanthomonas albilineans GPE PC73] gi|283472615|emb|CBA15120.1| probable dna polymerase III, epsilon subunit protein [Xanthomonas albilineans] Length = 244 Score = 135 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 131/239 (54%), Gaps = 13/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + R F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWKKGNRVVEIGAVELLERRPSGRHFHRYLRPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSR 122 T EFL DKP F + EF +F + + HNA FD+GF++ EL R LD + Sbjct: 60 TLEFLADKPEFHEVVDEFLEFIDGAE--LVIHNASFDLGFLDYELSRLGESYGCILDRAS 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR + P RN L++LCKR G+ +HR HGALLD+ +L +VYI + G +I Sbjct: 118 VVDTLLLARERFPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILCEVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F +LL R + L T EL+ H + TL K A+WD Sbjct: 178 FALVEETTGKTDAHGVAFDMATLLPRPQVL---PTASELEAHQARLDTLRKKAGRALWD 233 >gi|52425625|ref|YP_088762.1| DNA polymerase III subunit epsilon [Mannheimia succiniciproducens MBEL55E] gi|52307677|gb|AAU38177.1| DnaQ protein [Mannheimia succiniciproducens MBEL55E] Length = 260 Score = 135 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 120/246 (48%), Gaps = 10/246 (4%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+I+ D ETTG++ + IIEIGAVE+++ T R +++ P+ R PEA+K+ Sbjct: 9 RQILLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPD-RLVDPEAIKV 67 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGITDE L+DKP F+ + EF DF I+ D Sbjct: 68 HGITDEMLEDKPVFTEVAQEFIDFIKGAELLIHNAPFDVGFMDYEFRKHHIDVKTADICS 127 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL +AR+ +P RN L++LC R GI + R HGALLD+ +L DVY+ M G + + Sbjct: 128 VTDTLQLARQMYPGKRNSLDALCDRLGIDNTKRVLHGALLDAEILGDVYLVMTGGQTSLF 187 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 + + + + + T EEL H + I+ + K N +W+ Sbjct: 188 DDNEPELADIHSAKAHILAQNADKVAHHLSLLQPTDEELQAHLEYIKLINKKSKDNCLWE 247 Query: 239 RYISSN 244 + + S+ Sbjct: 248 KRLGSD 253 >gi|319898105|ref|YP_004136302.1| DNA polymerase iii epsilon subunit [Haemophilus influenzae F3031] gi|317433611|emb|CBY81995.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3031] Length = 256 Score = 135 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 82/256 (32%), Positives = 128/256 (50%), Gaps = 15/256 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N +N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177 Query: 176 VGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 G + + ++ R +E+ ++ + T +EL H + ++ + Sbjct: 178 GGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKMMN 237 Query: 233 K----NAIWDRYISSN 244 K N +WD+ +N Sbjct: 238 KKSGNNCLWDKRFGNN 253 >gi|154245775|ref|YP_001416733.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus Py2] gi|154159860|gb|ABS67076.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus Py2] Length = 240 Score = 135 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 94/240 (39%), Positives = 139/240 (57%), Gaps = 7/240 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR++EIG VE+++ T F V++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLEAYGGDRLVEIGCVEMVNRILTGTVFHVYINPE-RDMPVEAFNVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F + EF +F E + HNA FD+GF+NAEL+R+ + + R++D Sbjct: 60 SAEFLSDKPKFKDVADEFLNFIAE--DTLVIHNAAFDIGFLNAELERLGRPTIARDRVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++ARRKHP N L+ L RYGI S R KHGALLD+ LL++VY +++ G G Sbjct: 118 TLALARRKHPGGGNRLDDLMNRYGIDSSRRVKHGALLDAELLAEVYGELLGGKQASLIGL 177 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245 + + + V + R PL R+T E + H I ++G+ A+W +Y + Sbjct: 178 VEDTS---EAPRLVVAAAAAHPRPVPLAPRLTAAEAEAHAAFIASMGEKALWLKYADVPE 234 >gi|326405243|ref|YP_004285325.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301] gi|325052105|dbj|BAJ82443.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301] Length = 235 Score = 135 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 13/232 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++FD ETTGL+ DR+IE+ A+EL + T + F + P R EA ++HG+T Sbjct: 3 RAVLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGKVFHTLIDPE-RDIPAEASRVHGMT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + KP F+ I +E +FF E +AHNA FD GF++AE RI + LD +R+IDT Sbjct: 62 SADVAGKPKFAEIAAELLEFFAE--DPLVAHNAPFDFGFLDAEFARIGRAALDRARMIDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LC+R+ I +S R+ H ALLD LL++VY+++ G Q Sbjct: 120 LALAKQRFPGMPNSLDALCRRFDIDLSARTTHNALLDCKLLAEVYVELTG-GRQRGLDLA 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 E + P P + EL H+ I+ L K +W Sbjct: 179 AESTIRLVEYRSEGPRT-------PRPIVASAAELAAHEAFIEKL-KEPVWR 222 >gi|167856497|ref|ZP_02479211.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755] gi|167852377|gb|EDS23677.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755] Length = 256 Score = 135 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 88/256 (34%), Positives = 138/256 (53%), Gaps = 17/256 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M ++ +R++V D ETTG++ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSKQQILRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+++HGIT+E L DKP+F+ I EF +F I HNA FDVGFI+ E + Sbjct: 60 EAEAMQVHGITNEMLADKPAFAEIADEFIEFIKGAE--LIIHNAPFDVGFIDHEFSFLPN 117 Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + D+L +AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPEKVAQMCTVTDSLQLARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M QI + ++ + V + + ++EL EH K ++ + Sbjct: 178 MMTG--GQIALIGEDEHEQAKTSSVEQVYQPLNIDTSNLIVLAPDEKELAEHLKYLELIN 235 Query: 233 K----NAIWDRYISSN 244 K N +W R +++ Sbjct: 236 KKSKGNCLWTRELATE 251 >gi|261820459|ref|YP_003258565.1| DNA polymerase III subunit epsilon [Pectobacterium wasabiae WPP163] gi|261604472|gb|ACX86958.1| DNA polymerase III, epsilon subunit [Pectobacterium wasabiae WPP163] Length = 245 Score = 135 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 82/242 (33%), Positives = 128/242 (52%), Gaps = 16/242 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNI 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLD 119 HGI+DEFL DKP+++ I +F DF + HNA FD+GF++ E + R Sbjct: 66 HGISDEFLADKPTYADIADDFLDFIRGAE--LVIHNATFDIGFMDYEFRLLNRDLPKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M Sbjct: 124 FCKITDSLFMARKIFPGKRNSLDALCDRYLIDNSKRTLHGALLDAEILAEVYLAMTG--G 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 Q + F + + + E + + + EL H++ + + K + Sbjct: 182 QTSLTFSMDGETQQQNENSETIQRIVRPQSALTVLYADEVELLAHEQRLDLIAKKGGSCL 241 Query: 237 WD 238 W Sbjct: 242 WR 243 >gi|148261748|ref|YP_001235875.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5] gi|146403429|gb|ABQ31956.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5] Length = 225 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 124/232 (53%), Gaps = 13/232 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++FD ETTGL+ DR+IE+ A+EL + T + F + P R EA ++HG+T Sbjct: 3 RAVLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGKVFHTLIDPE-RDIPAEASRVHGMT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + KP F+ I +E +FF E +AHNA FD GF++AE RI + LD +R+IDT Sbjct: 62 SADVAGKPKFAEIAAELLEFFAE--DPLVAHNAPFDFGFLDAEFARIGRAALDRARMIDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LC+R+ I S R+ H ALLD LL++VY+++ G Q Sbjct: 120 LALAKQRFPGMPNSLDALCRRFDIDFSARTTHNALLDCKLLAEVYVELTG-GRQRGLDLA 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 E + P P + EL H+ I+ L K +W Sbjct: 179 AESTIRLVEYRSEGPRT-------PRPVVASAAELAAHEAFIEKL-KEPVWR 222 >gi|303250637|ref|ZP_07336834.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650625|gb|EFL80784.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 257 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 135/251 (53%), Gaps = 16/251 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKP F+ + EF +F I HNA FDV F++ E + Sbjct: 60 EEEAIKVHGITNEFLQDKPVFAEVADEFIEFIKGAE--LIIHNAPFDVAFMDQEFSYLEN 117 Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + G + + I+ + + +++EE H++ ++ + Sbjct: 178 MMTGGQLAL-LGEEDATATHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236 Query: 233 K----NAIWDR 239 K N IW R Sbjct: 237 KKSKGNCIWMR 247 >gi|145631632|ref|ZP_01787397.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021] gi|144982766|gb|EDJ90295.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021] Length = 256 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 128/256 (50%), Gaps = 15/256 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RSV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F I +F D+ N +N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKEIAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLDLNV 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177 Query: 176 VGGSQINFGFKTNEDRFF---KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 G + + ++ E +E+ ++ + T +EL H + ++ + Sbjct: 178 GGQTNLFDEEESVESDVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMN 237 Query: 233 K----NAIWDRYISSN 244 K N +WD+ +N Sbjct: 238 KKSGNNCLWDKRFGNN 253 >gi|332288192|ref|YP_004419044.1| DNA polymerase III subunit epsilon [Gallibacterium anatis UMN179] gi|330431088|gb|AEC16147.1| DNA polymerase III subunit epsilon [Gallibacterium anatis UMN179] Length = 248 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 121/245 (49%), Gaps = 12/245 (4%) Query: 8 RKIVFDIETTGLD----SK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D ETTG+ + RIIEIGAVEL++ T R F V+L P+ ++ PEA+ + Sbjct: 7 RIVVLDTETTGMSGTSEPQIGHRIIEIGAVELVNRRYTGRNFHVYLQPD-QQVDPEAVAV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGITDEFL DKP F + EF +F LQ + Sbjct: 66 HGITDEFLADKPRFKEVAQEFINFIKGAELVIHNAPFDVAFMNQEFALQGQALTTDQLCK 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + D+L +AR+ +P +N L++LC R GI S R+ HGALLD+ +L+DVY+ M G + Sbjct: 126 VTDSLKVARQLYPGKKNSLDALCSRLGIDNSKRTLHGALLDAEILADVYLAMTGGQGSLQ 185 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 + +E ++ + + + ++ + + EE+ H + + + K +W Sbjct: 186 LDTEPAVAVQQQEVQQQIQHSNTPRK--LFVLKPSAEEIQAHQEYLSLINKKSGDQCLWQ 243 Query: 239 RYISS 243 + + Sbjct: 244 QKLEQ 248 >gi|297538708|ref|YP_003674477.1| DNA polymerase III subunit epsilon [Methylotenera sp. 301] gi|297258055|gb|ADI29900.1| DNA polymerase III, epsilon subunit [Methylotenera sp. 301] Length = 235 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 12/240 (5%) Query: 7 MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL ++ R+IE+ AVE+++ T + F +L P+ R+ A ++HGI Sbjct: 1 MRQIFLDTETTGLYHAQGHRVIEVAAVEVINRRLTKQHFHYYLNPD-REIDQGAQEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL+DKP F+ I +E F + L ++I D Sbjct: 60 SLEFLQDKPHFADIANELIAFIADSELIMHNAPFDVGFLNREFGLIEQKPVEAITAKITD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IA+ P RN L++LCK YGI S R+ HGALLD+ LL+DVY+ M G + Sbjct: 120 TLKIAKEMRPGQRNSLDALCKHYGIDNSKRTLHGALLDAELLADVYMAMTRGQDSLMMEL 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWDRYISS 243 + + ++ + L + E+ HD+ I +L K + +W ++ + Sbjct: 180 DKPQQKNSDAIQEI--------KQPVLVKLANQAEISAHDEYIASLAKSSDCLWAKFEAK 231 >gi|291616383|ref|YP_003519125.1| DnaQ [Pantoea ananatis LMG 20103] gi|291151413|gb|ADD75997.1| DnaQ [Pantoea ananatis LMG 20103] Length = 243 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 136/249 (54%), Gaps = 18/249 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIG VE+++ T F ++L P+ R Sbjct: 1 MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGGVEVINRRLTGNNFHMYLKPD-RLV 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QR 112 PEA +HGI DEFL DKP+FS I EF D+ + HNA FD+GF++ E QR Sbjct: 59 DPEAFGVHGIADEFLLDKPTFSDIADEFLDYIRGAE--LVIHNASFDIGFMDYEFGKLQR 116 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + +I D+L++ARR P RN L++LC RY I S R+ HGALLD+ +L++V++ Sbjct: 117 GIEKTETFCKITDSLAMARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAEILAEVFL 176 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M Q + F + E+R +++ + + I+ + EE+++H+ + + Sbjct: 177 TMTG--GQTSLSFSSEEERARQQQSEGIQRIAR-PSSGLRVVTASDEEVNQHESRLDLIM 233 Query: 233 KN---AIWD 238 K +W Sbjct: 234 KKGGSCLWR 242 >gi|56416800|ref|YP_153874.1| DNA polymerase III epsilon chain [Anaplasma marginale str. St. Maries] gi|222475164|ref|YP_002563580.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Florida] gi|254995002|ref|ZP_05277192.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Mississippi] gi|255003148|ref|ZP_05278112.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Puerto Rico] gi|255004274|ref|ZP_05279075.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Virginia] gi|56388032|gb|AAV86619.1| DNA polymerase III epsilon chain [Anaplasma marginale str. St. Maries] gi|222419301|gb|ACM49324.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Florida] Length = 232 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 135/239 (56%), Gaps = 11/239 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGLD+ DRIIEIG VEL+D+ T + F ++ P R A K+HGIT Sbjct: 4 REIVLDTETTGLDAASGDRIIEIGCVELVDFVMTGQVFHKYINPE-RDIPIAATKIHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +K+ P F+ + +F +F + + + HNA FD+ FI E++RI K L + ++DT Sbjct: 63 TDMVKNMPKFAEMADQFLNFVQD--SVLVIHNAGFDLKFIETEMERIGKTKL-YNPVVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +ARRK P L++LCKR+ I+ S R HGAL D+ LL+ VY+++ G Q + GF Sbjct: 120 LEVARRKFPGMPASLDALCKRFDISTSSRRFHGALKDATLLARVYVELCG-GIQRSLGFV 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245 + + K + P I+ EL H ++I + K+ IW+ Y+ ++ Sbjct: 179 SGDLTQSTRASKASKPV----LQAPRAFTISDLELKLHAESISKM-KDPIWNMYLKTSD 232 >gi|294141155|ref|YP_003557133.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12] gi|293327624|dbj|BAJ02355.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12] Length = 242 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 79/242 (32%), Positives = 127/242 (52%), Gaps = 20/242 (8%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+I+ D ETTG++ RIIEIG VE+++ T R + ++ P + EA++ Sbjct: 9 RQIILDTETTGMNQAAGAIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QLIDEEAIQ 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPL 118 +HGI++E++ +KP F+ I F +F + AHNA FD+ F++ E + Sbjct: 68 VHGISNEYVANKPKFAEIAQSFIEFIDGAEVV--AHNASFDISFMDHEFGLLRPKGPKTA 125 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D I+DTL+IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ M G Sbjct: 126 DICGILDTLAIAKYLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLLMTGGQ 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAI 236 ++ N T + + +R K + +EL +H+ + + K Sbjct: 186 TKFNLSGDTGGIGAGGIIRLS------QERTKLKVISASADELAKHEARLDIVAKGGQCA 239 Query: 237 WD 238 W Sbjct: 240 WR 241 >gi|84501202|ref|ZP_00999407.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Oceanicola batsensis HTCC2597] gi|84390493|gb|EAQ02981.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Oceanicola batsensis HTCC2597] Length = 230 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 95/235 (40%), Positives = 140/235 (59%), Gaps = 8/235 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL ++ T T+ V++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPEQGDRIVEIGAVELWNHVPTGETYHVYINPE-RSMPQEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F + F +F + A+ + HNA FD+ FINAEL +N + + ID Sbjct: 60 GDDFLRDKPVFRDVARGFVEFVKD--AKLVIHNASFDMKFINAELGWLNIPAIPWDQAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR++ P S L++LC+R+GI S R+ HGALLDS +L++VY++++ G Q +F Sbjct: 118 TLAIARQRFPGSPASLDALCRRFGIDNSARTLHGALLDSEILAEVYLELIG-GRQPDFAL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + + + R PL RIT EE H + ++ LG A+W Y Sbjct: 177 SASTGTQTGTD---TADWRPKPRPTPLPPRITAEEAAAHAEFVERLGDGALWKSY 228 >gi|329114274|ref|ZP_08243036.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001] gi|326696350|gb|EGE48029.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001] Length = 224 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 90/233 (38%), Positives = 130/233 (55%), Gaps = 12/233 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I+FD ETTGLD DR+IEI A+EL+ T RTF + P R EA ++HG T Sbjct: 3 RSILFDTETTGLDPATGDRVIEIAALELVGDLPTGRTFHKLIDPE-RDVPEEASRVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ KP F+ + +F F + IAHNA+FD GF+NAEL+R K L R++DT Sbjct: 62 RADLEGKPKFAEVADDFLAFVGD--DPLIAHNARFDFGFMNAELKRAGKKTLGLDRMVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +AR + P N L++LC+R+G+ +S R+ H ALLD LL+DVY+++M G Q G Sbjct: 120 LDMARERFPGMPNSLDALCRRFGVDLSARTTHNALLDCKLLADVYVELMG-GRQHGLGLM 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + + N +++ + T +EL H + L K IW+R Sbjct: 179 AEDGQLPSVMYEGPVNRKVVR------VQPTPQELAAHAAFVAGL-KEPIWER 224 >gi|15604567|ref|NP_221085.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str. Madrid E] gi|6685391|sp|Q9ZCJ9|DPO3E_RICPR RecName: Full=DNA polymerase III subunit epsilon gi|3861262|emb|CAA15161.1| DNA POLYMERASE III, EPSILON CHAIN (dnaQ) [Rickettsia prowazekii] gi|292572374|gb|ADE30289.1| DNA polymerase III epsilon chain [Rickettsia prowazekii Rp22] Length = 229 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 128/228 (56%), Gaps = 11/228 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGLD + RI+EIGA+E+++ T + F ++ P R EA K+HGI+ Sbjct: 5 REIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGKHFHFYINPE-RDMPFEAYKIHGIS 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123 EFLKDKP F +I ++F F + + I HNA FD+ F+N E L+R L+ + Sbjct: 64 GEFLKDKPLFKTIANDFLKFIAD--STLIIHNAPFDIKFLNHELSLLKRTEIKFLELTNT 121 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +AR P +R L++LCKR+ + S R HGAL D+ LL++VY+ + G Q F Sbjct: 122 IDTLVMARNMFPGARYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVALTG-GRQSTF 180 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 D V + + + + + + TKEEL +H + I + Sbjct: 181 KMINKPDEI---NNLAVKCVDVQQIKRGIVVKPTKEELQKHKEFIDKI 225 >gi|315179370|gb|ADT86284.1| DNA polymerase III, epsilon subunit [Vibrio furnissii NCTC 11218] Length = 234 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 88/240 (36%), Positives = 131/240 (54%), Gaps = 18/240 (7%) Query: 11 VFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ EA+++HG Sbjct: 2 VLDTETTGMNLEGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRAIQD-EAIEVHG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---S 121 ITDEFL DKP + + EF DF +AHNA FDVGF++ E +++ Sbjct: 61 ITDEFLVDKPEYKDVHEEFLDFIRGAE--LVAHNAPFDVGFMDYEFSKLSIPTAKTDELC 118 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G + + Sbjct: 119 KVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 178 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWDR 239 F + E+ K V R R T +E+ H + + K+ +W + Sbjct: 179 QFSGSSQENGMGAGAIKRVAEG----RKALKVLRATADEIQAHQDRLDIVEKSGTCLWRQ 234 >gi|50122261|ref|YP_051428.1| DNA polymerase III subunit epsilon [Pectobacterium atrosepticum SCRI1043] gi|49612787|emb|CAG76237.1| DNA polymerase III, epsilon chain [Pectobacterium atrosepticum SCRI1043] Length = 245 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 129/242 (53%), Gaps = 16/242 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNI 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLD 119 HGI+DEFL DKP+++ + +F DF + HNA FD+GF++ E + R Sbjct: 66 HGISDEFLADKPTYADVADDFLDFIRGAE--LVIHNATFDIGFMDYEFRLLNRNIPKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR+ P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKITDSLFMARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 + F + R + + + + EL H++ + + K + Sbjct: 184 SLTFSMEGEAQRQNESNETIQRIVRPQS--ALKVLYADETELLAHEQRLDLVAKKGGSCL 241 Query: 237 WD 238 W Sbjct: 242 WR 243 >gi|83749368|ref|ZP_00946363.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551] gi|207742873|ref|YP_002259265.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum IPO1609] gi|83723945|gb|EAP71128.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551] gi|206594267|emb|CAQ61194.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum IPO1609] Length = 242 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 75/238 (31%), Positives = 113/238 (47%), Gaps = 11/238 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR+IEIG VEL++ T R ++ P R+ P A+ +HGI Sbjct: 1 MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPE-REIDPGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+EF+ DKP F+ + +E D+ A + + ID Sbjct: 60 TNEFVADKPKFAEVVAEIRDYVQGAEAIIHNAAFDLGFLDMEFRRLGLPSFREHLDGHID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL ARR P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G + + Sbjct: 120 TLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239 + E L + T+ E H ++ + K +W R Sbjct: 180 LEGGETAATEAAAVD-----LSGLELPILLATEVEAAAHATVLKEIDKASGGKTVWSR 232 >gi|170739343|ref|YP_001767998.1| DNA polymerase III subunit epsilon [Methylobacterium sp. 4-46] gi|168193617|gb|ACA15564.1| DNA polymerase III, epsilon subunit [Methylobacterium sp. 4-46] Length = 238 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 97/240 (40%), Positives = 142/240 (59%), Gaps = 10/240 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R+IV D ETTG D+K DR++EIG +ELL++ T R F ++ P R S AL +HG+ D Sbjct: 3 REIVLDTETTGTDAKTDRLVEIGGIELLNHIPTGREFHRYINPQ-RPVSQGALAVHGLAD 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSRII 124 FL DKP F++I F DF + HNA FDVGF+NAE R +D + ++ Sbjct: 62 AFLADKPPFAAILPAFLDFCGDATFV--IHNAAFDVGFLNAEYARLGDAAPPAIDLAGVV 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++ARRKHP++ N+L++LC RYGI S R+KHGALLD+ +L++VYI+++ G Q + G Sbjct: 120 DTLALARRKHPNAANNLDALCARYGIDNSRRTKHGALLDAQILAEVYIELLG-GKQTSLG 178 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 + + P + + + +R+T+ E + H LG AIW YI + Sbjct: 179 LTLDVASTVRVATLGGPAAHV---PRAVRSRLTQAEREAHAAFTAGLGGGAIWRDYIGED 235 >gi|322831648|ref|YP_004211675.1| DNA polymerase III, subunit epsilon [Rahnella sp. Y9602] gi|321166849|gb|ADW72548.1| DNA polymerase III, epsilon subunit [Rahnella sp. Y9602] Length = 245 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 125/242 (51%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 9 RIVVLDTETTGMNKLGVHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPD-RLVDPEAFGV 67 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLD 119 HGI+DEFL DKP+F+ + +F ++ + HNA FD+GF++ E Sbjct: 68 HGISDEFLADKPTFADVADDFIEYIRGGE--LVIHNATFDIGFMDYEFDMLGRNLPKTET 125 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN+L++L RY I S R+ HGALLDS +L++VY+ M G + Sbjct: 126 FCKITDSLAMARKLFPGKRNNLDALSDRYLIDNSKRTLHGALLDSEILAEVYLMMTGGQT 185 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 I F T+E T +EL H++ + + K + Sbjct: 186 SIKF---THEGEQNTGADGLGIQRVARPASGLKVIAATDQELAWHEERLDLVVKKGGSCL 242 Query: 237 WD 238 W Sbjct: 243 WR 244 >gi|258541965|ref|YP_003187398.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO 3283-01] gi|256633043|dbj|BAH99018.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636100|dbj|BAI02069.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639155|dbj|BAI05117.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-07] gi|256642209|dbj|BAI08164.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-22] gi|256645264|dbj|BAI11212.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-26] gi|256648319|dbj|BAI14260.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-32] gi|256651372|dbj|BAI17306.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654363|dbj|BAI20290.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-12] Length = 224 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 127/232 (54%), Gaps = 12/232 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I+FD ETTGLD DR+IEI A+EL+ T R F + P R EA ++HG T Sbjct: 3 RSILFDTETTGLDPATGDRVIEIAALELVGDLPTGRNFHTLIDPE-RDVPEEASRVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ KP F+ I +F F + IAHNA+FD GF+NAEL+R K L R++DT Sbjct: 62 RADLEGKPKFAEIADDFLAFVGD--DPLIAHNARFDFGFMNAELKRAGKKTLGLDRMVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +AR + P N L++LC+R+G+ +S R+ H ALLD LL+DVY+++M G Q G Sbjct: 120 LDMARERFPGMPNSLDALCRRFGVDLSARTTHNALLDCKLLADVYVELMG-GRQHGLGLM 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + + + N ++ + T EEL H + L K +W+ Sbjct: 179 AEDGQLPSVMYEGPVNRKAVR------VQPTAEELAAHAAFVAGL-KEPVWE 223 >gi|171057726|ref|YP_001790075.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6] gi|170775171|gb|ACB33310.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6] Length = 241 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 117/244 (47%), Gaps = 9/244 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL + DR++E+G VE+++ T R + P R N EA+++HG+ Sbjct: 1 MRQIFLDTETTGLSHESGDRVVELGCVEMVNRRLTGRNLHHYFNPQ-RANHEEAVRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD FL DKP FS++ EF DF + N + ++ D Sbjct: 60 TDAFLADKPLFSAVAQEFVDFVRDAEIIAHNANFDVGFLDAELKRIGHPPLKQLVDKVTD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L +AR + P N L++LC+R + + R+ HGALLD+ LL++VYI+M G + + Sbjct: 120 SLVMAREQFPGKANSLDALCRRLEVDNTSRTVHGALLDAGLLAEVYIRMTRGQNSLVIDD 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDRYI 241 + E+ +++ EE+ H+ + L K++ +W Sbjct: 180 SPVQSEQQVEQPLIAVDLTAFVLP---VLVAEDEEIAAHEAVLSGLDKSSGGKTLWRSIG 236 Query: 242 SSNQ 245 +S Q Sbjct: 237 ASVQ 240 >gi|253999157|ref|YP_003051220.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4] gi|253985836|gb|ACT50693.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4] Length = 234 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 111/234 (47%), Gaps = 10/234 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL + RIIEI AVE+++ T++ + V+L P+ R+ A ++HGI Sbjct: 1 MRQIFLDTETTGLYPAQGHRIIEIAAVEVINRRITSQHYHVYLNPD-REIDAGAQEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL+DKP F+ + EF DF + S IID Sbjct: 60 TLEFLQDKPRFADVVGEFLDFVQDSELIIHNAPFDVGFLNAELGRIEKPGIESVASGIID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +A+ P RN+L++LC+ +GI S R+ HGALLD+ LL+DVY+ M G + Sbjct: 120 TLKMAKEMRPGQRNNLDALCRHFGIDNSKRTLHGALLDAELLADVYLAMTRGQESLIIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIW 237 + + IS + E H + +Q L K +W Sbjct: 180 LDTPVHNDDNDALQIQAISQ------KVVLADETETAAHQQYLQGLAKGGACVW 227 >gi|253996734|ref|YP_003048798.1| DNA polymerase III subunit epsilon [Methylotenera mobilis JLW8] gi|253983413|gb|ACT48271.1| DNA polymerase III, epsilon subunit [Methylotenera mobilis JLW8] Length = 227 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 112/235 (47%), Gaps = 12/235 (5%) Query: 7 MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL ++ R+IEI AVE+++ T F +L P+ R P A ++HGI Sbjct: 1 MRQIFLDTETTGLYHAQGHRVIEIAAVEVVNRRLTKHHFHYYLNPD-RDIDPGAQEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL+DKP F+ I +E F + L K +++ D Sbjct: 60 SLEFLQDKPRFADIANELITFIADAELIMHNAPFDVGFLNCELGLIGQKKVEEISAKVTD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IA+ P RN+L++LCK +GI S R+ HGALLD+ LL+DVY+ M G + Sbjct: 120 TLKIAKEMRPGQRNNLDALCKYFGIDNSKRTLHGALLDAELLADVYMAMTRGQDSLMIAL 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWD 238 + +S + EL +H+ + L K N +W+ Sbjct: 180 DQPSHETVE--------VSAVSHAPLQVKLANSTELADHEAYLAGLAKSGNCVWN 226 >gi|307610085|emb|CBW99626.1| hypothetical protein LPW_13941 [Legionella pneumophila 130b] Length = 233 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 120/230 (52%), Gaps = 6/230 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTG+ + R+IEIG +EL+D T + F ++L P R+ A ++HGI Sbjct: 1 MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL+DKP F I +EF F + + NK D RI+D Sbjct: 60 STEFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR KHP RN L++LCKRY I +R HGALLD+ +L+ VY+ M G S Sbjct: 120 TLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSS----L 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 T + F + K I L KP+ + +EEL +H ++ + K + Sbjct: 176 FTEVESSFSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKS 225 >gi|218529738|ref|YP_002420554.1| DNA polymerase III subunit epsilon [Methylobacterium chloromethanicum CM4] gi|218522041|gb|ACK82626.1| DNA polymerase III, epsilon subunit [Methylobacterium chloromethanicum CM4] Length = 236 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 89/239 (37%), Positives = 138/239 (57%), Gaps = 10/239 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG +++ DR+IEIG VEL+++ +T TF + P R S A +HGI+ Sbjct: 3 REIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGAFAVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSRI 123 D L DKP F+ + F +F ++ + HNA FDVGF+N E + + Sbjct: 62 DAMLADKPVFAEVVDAFLEFCSDAR--LVIHNAPFDVGFLNMEFARLGPAAPKAIALEDV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +ARRKHP + N+L++LC RYG+ + R KHGALLD+ +L++VY++++ G Q + Sbjct: 120 VDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELLG-GKQTSL 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 G E + + R P+ +R+T+ E HD +++LG NA+W Y+ Sbjct: 179 GLSIAEPAETVALGALTDSGPVGPR--PIRSRLTEGERLRHDSFVESLGTNAVWREYME 235 >gi|54297294|ref|YP_123663.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris] gi|53751079|emb|CAH12490.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris] Length = 233 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 119/230 (51%), Gaps = 6/230 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTG+ + R+IEIG +EL+D T + F ++L P R+ A ++HGI Sbjct: 1 MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL+DKP F I +EF F + + NK D RI+D Sbjct: 60 STEFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR KHP RN L++LCKRY I +R HGALLD+ +L+ VY+ M G S Sbjct: 120 TLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSS----L 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 T + + K I L KP+ + +EEL +H ++ + K + Sbjct: 176 FTEVESSLSQSKIKTQEIKSLSLKKPVIMKANEEELIQHQSFVEFISKKS 225 >gi|78485275|ref|YP_391200.1| DNA polymerase III, epsilon subunit [Thiomicrospira crunogena XCL-2] gi|78363561|gb|ABB41526.1| DNA polymerase III, epsilon subunit [Thiomicrospira crunogena XCL-2] Length = 231 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 115/232 (49%), Gaps = 10/232 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTG D K D+IIEIGAVEL+ T+ + ++ P R +A+++HGI Sbjct: 1 MRQILLDTETTGFDPKNGDKIIEIGAVELIKRKLTHNNYHQYIQPE-RDVPIDAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA--HNAKFDVGFINAELQRINKDPLDPSRI 123 T+EFL KP F+ + +F ++ + F ++ D I Sbjct: 60 TNEFLVGKPIFADVVDDFMEYVAGAELIIHNAPFDVGFINQELSQLPNNKWGKIEDHCTI 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L +AR+ +P RN L++LCKR+ I S+R+ HGALLDS +L+DVY+ M G + + Sbjct: 120 TDSLKMARKAYPGQRNSLDALCKRFLIDNSNRTLHGALLDSEILADVYLAMTGGQTALIL 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + +R + + EEL H+ +Q + + Sbjct: 180 ADEEGSSSDASRVNLNT------QRAPLKVLKASAEELAAHNGKLQQISEKC 225 >gi|149908875|ref|ZP_01897535.1| DNA polymerase III subunit epsilon [Moritella sp. PE36] gi|149808149|gb|EDM68090.1| DNA polymerase III subunit epsilon [Moritella sp. PE36] Length = 245 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 137/239 (57%), Gaps = 19/239 (7%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IVFD ETTG++ R+IEIG +EL++ T RT+ V++ P+ R PEA+ Sbjct: 14 RVIVFDTETTGMNMGAGGVHIGHRVIEIGCIELINRRPTGRTYHVYIKPD-RLVDPEAIA 72 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118 +HGITDEFL+DKPSF++I EF F +AHNA FD F++ E + +NK Sbjct: 73 VHGITDEFLQDKPSFATIADEFIAFIVGAE--LVAHNASFDTNFLDHEFRLLNKGLPATK 130 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + +I DTL+IA++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 131 EICKITDTLAIAKKLFPGKRNNLDVLCTRYGIDNSHRTLHGALLDAEILADVYLFMTGGQ 190 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 +++N + + + R + T +EL HD+ + + +A+W Sbjct: 191 TKLNLSQDSANSQGGGIRRVAAS------RAPLKVVQATDDELKAHDERL-GIVGDALW 242 >gi|33151469|ref|NP_872822.1| DNA polymerase III epsilon chain [Haemophilus ducreyi 35000HP] gi|33147689|gb|AAP95211.1| DNA polymerase III epsilon chain [Haemophilus ducreyi 35000HP] Length = 256 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 85/257 (33%), Positives = 134/257 (52%), Gaps = 18/257 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M +R++V D ETTG++ IIEIGAVEL++ T RTF V++ P R+ Sbjct: 1 MSEPQIIRQVVLDTETTGMNFNGPPQIGHNIIEIGAVELINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---R 112 EA+K+HGIT+ FL+DKP+F+ I EF F I HNA FDV FI+ E Sbjct: 60 EEEAIKVHGITNAFLQDKPTFAEIAHEFLAFIQGAE--LIIHNAPFDVAFIDQEFSSLVN 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + DTL +AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPSKTAEMCTVTDTLQMARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M Q+ + ++ + ++ + ++++EE H + + L Sbjct: 178 MMTG--GQLALLTEEEHSHTQQQRETSLAVKEHFDTSGLIVLQLSQEECQAHQEYLALLD 235 Query: 233 K----NAIWDRYISSNQ 245 K N +W+ ++ + Sbjct: 236 KKSKGNCLWN-MLTKAE 251 >gi|240138045|ref|YP_002962517.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens AM1] gi|240008014|gb|ACS39240.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens AM1] Length = 236 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 89/239 (37%), Positives = 137/239 (57%), Gaps = 10/239 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG +++ DR+IEIG VEL+++ +T TF + P R S A +HGI+ Sbjct: 3 REIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGAFAVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSRI 123 D L DKP F+ + F +F + + HNA FDVGF+N E + + Sbjct: 62 DAMLADKPVFAEVVDAFLEFCGDAR--LVIHNAPFDVGFLNMEFARLGPAAPKAIALEDV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +ARRKHP + N+L++LC RYG+ + R KHGALLD+ +L++VY++++ G Q + Sbjct: 120 VDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELLG-GKQTSL 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 G E + + R P+ +R+T+ E HD +++LG NA+W Y+ Sbjct: 179 GLSIAEPAETVALGALTDSGPVGPR--PIRSRLTEGERLRHDSFVESLGTNAVWREYME 235 >gi|23010300|ref|ZP_00051037.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum magnetotacticum MS-1] Length = 236 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 87/239 (36%), Positives = 135/239 (56%), Gaps = 10/239 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG D+K DR+IEIG VEL+++ +T + + P R S A +HGI+ Sbjct: 3 REIVLDTETTGTDAKNGDRLIEIGCVELINHVQTGAYYHQLINPQ-RPVSEGAFAVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSRI 123 D L DKP F+ + F F + + HNA FDVGF+N E + + Sbjct: 62 DAMLADKPVFADVVDAFVAFCGDAR--LVIHNAPFDVGFLNMEFAKLGPAAPPLIVLEDV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +ARRKHP + N+L++LC RYG+ + R KHGALLD+ +L++VY++++ G Q + Sbjct: 120 VDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELLG-GKQTSL 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 G E + + + R + +R+T++E H +++LG NA+W Y+ Sbjct: 179 GLSIAEPAGSVAVEAVADSGPIAPRA--MRSRLTEDERLRHVSFVESLGTNAVWRDYLE 235 >gi|301155941|emb|CBW15411.1| DNA polymerase III epsilon subunit [Haemophilus parainfluenzae T3T1] Length = 253 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 116/247 (46%), Gaps = 11/247 (4%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T F +++ P+ R P+A+K+ Sbjct: 6 RQIVLDTETTGMNQIGAHYEGHCIIEIGAVEMINRKYTGNNFHIYIKPD-RLVDPDAIKV 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGITDE L DKP F +I +F ++ ++ D Sbjct: 65 HGITDEMLADKPDFKTIAQDFIEYIRGAELLIHNAPFDVGFMDYEFRKLGLDIKTTDICL 124 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL +AR+ +P RN L++LC R GI S R+ HGALLD+ +L+DVY+ M G + + Sbjct: 125 VTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLSMTGGQTSLF 184 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 + ++ + T +E+ H ++ + K W Sbjct: 185 DEDHADISIIQAGANMQDRQSTVNFSQNLKVLQPTDDEIQAHLDFLKLVNKKSDGKCFWS 244 Query: 239 RYISSNQ 245 +S++ Sbjct: 245 -IRTSDE 250 >gi|163752245|ref|ZP_02159446.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99] gi|161327875|gb|EDP99054.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99] Length = 240 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 78/242 (32%), Positives = 126/242 (52%), Gaps = 22/242 (9%) Query: 8 RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+++ D ETTG++ RIIEIG VE+++ T R + ++ P + EA+ Sbjct: 9 RQVILDTETTGMNQGAGAIFLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QLIDEEAIA 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPL 118 +HGI++E++ +KP F+ I F +F + AHNA FD+ F++ E Q Sbjct: 68 VHGISNEYVANKPKFAEIAQSFIEFIDGAEVV--AHNASFDISFMDHEFGLLQPKGPKTA 125 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D I+DTL+IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ M G Sbjct: 126 DICAILDTLAIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLLMTGGQ 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI-- 236 +++N + +R K + +EL +H+ + + K + Sbjct: 186 TKLNLSGDSGGAGGI--------IRLSQERTKLKVIAASADELAKHEARLDIVAKGGLCA 237 Query: 237 WD 238 W Sbjct: 238 WR 239 >gi|28899066|ref|NP_798671.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD 2210633] gi|153837020|ref|ZP_01989687.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] gi|260361704|ref|ZP_05774731.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] gi|260876852|ref|ZP_05889207.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|260897333|ref|ZP_05905829.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|260899809|ref|ZP_05908204.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|28807290|dbj|BAC60555.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD 2210633] gi|149749793|gb|EDM60538.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] gi|308088283|gb|EFO37978.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|308091367|gb|EFO41062.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|308107229|gb|EFO44769.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|308113581|gb|EFO51121.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] Length = 240 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 93/241 (38%), Positives = 138/241 (57%), Gaps = 20/241 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ PEA++ Sbjct: 11 RIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPEAIQ 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPL 118 +HGITDEFL DKP ++SI EF DF +AHNA FD GF++ E + Sbjct: 70 VHGITDEFLVDKPEYASIHQEFLDFIKGAE--LVAHNAPFDTGFMDYEFEKLDPTIGKTD 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + + F K+E + R R T +EL+ H K ++ + + IW Sbjct: 188 TSLEFN-------ANKQEGGVETIRRIEGRKALKVLRATADELEAHQKRLELVN-DCIWH 239 Query: 239 R 239 + Sbjct: 240 Q 240 >gi|190573031|ref|YP_001970876.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia K279a] gi|190010953|emb|CAQ44562.1| putative DNA polymerase III, epsilon chain [Stenotrophomonas maltophilia K279a] Length = 243 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 89/239 (37%), Positives = 127/239 (53%), Gaps = 13/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +RI+EIG VEL T + ++ P+ + A ++ G+ Sbjct: 1 MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDC-EFEQGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 T EFL DKP F+ I EF F + I HNA FD+GF++ EL D Sbjct: 60 TLEFLDDKPEFAQIADEFLAFIDGAE--LIIHNAAFDLGFLDNELSLLGPQYGKITDRCT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDTL++AR + P RN L++LCKR G+ SHR+ HG LLD+ +L DVYI + G +I Sbjct: 118 VIDTLAMARERFPGQRNSLDALCKRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 FG ++ + LL R + T EL+ H ++ L K A+WD Sbjct: 178 FGLGDDDGGGAGAALQAFDTSKLLPRPR---VVATPSELEAHAARLERLRKKAGHALWD 233 >gi|313201259|ref|YP_004039917.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688] gi|312440575|gb|ADQ84681.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688] Length = 234 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 111/234 (47%), Gaps = 10/234 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL + RIIEI AVE+++ T++ + V+L P+ R+ A ++HGI Sbjct: 1 MRQIFLDTETTGLYPAQGHRIIEIAAVEVINRRITSQHYHVYLNPD-REIDAGAQEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL+DKP F+ + EF DF + S IID Sbjct: 60 TLEFLQDKPRFADVVGEFLDFVQDSELIIHNAPFDVGFLNAELGRIEKPGIESVASGIID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +A+ P RN+L++LC+ +GI S R+ HGALLD+ LL+DVY+ M G + Sbjct: 120 TLKMAKEMRPGQRNNLDALCRHFGIDNSKRTLHGALLDAELLADVYLAMTRGQESLIIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIW 237 + + IS + E H + +Q L K +W Sbjct: 180 LDTPVHNDDNDALQIQAISH------KVVLADETETAAHQQYLQGLAKGGACVW 227 >gi|145628970|ref|ZP_01784769.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21] gi|144978473|gb|EDJ88196.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21] Length = 256 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 128/256 (50%), Gaps = 15/256 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N +N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177 Query: 176 VGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 G + + ++ R +E+ ++ + T +EL H + ++ L Sbjct: 178 GGQTNLFDEEESVESEVIRVVQEKAAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMLN 237 Query: 233 K----NAIWDRYISSN 244 K N +WD+ +N Sbjct: 238 KKSGNNCLWDKRFGNN 253 >gi|54294270|ref|YP_126685.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens] gi|53754102|emb|CAH15575.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens] Length = 233 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 120/230 (52%), Gaps = 6/230 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTG+ + R+IEIG +EL+D T + F ++L P R+ A ++HGI Sbjct: 1 MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL+DKP F I +EF F + + NK D RI+D Sbjct: 60 STEFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR KHP RN L++LCKRY I +R HGALLD+ +L+ VY+ M G S Sbjct: 120 TLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSS----L 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 T + F + K I L KP+ + +EEL +H ++ + K + Sbjct: 176 FTEVESSFSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKS 225 >gi|198282704|ref|YP_002219025.1| DNA polymerase III subunit epsilon [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665705|ref|YP_002424896.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247225|gb|ACH82818.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517918|gb|ACK78504.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 248 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 97/240 (40%), Positives = 138/240 (57%), Gaps = 13/240 (5%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++V D ETTG+D + R+IEIGAVEL+D T +Q +L P R + PEAL++HG+T Sbjct: 4 RQVVLDTETTGIDWKQGHRVIEIGAVELIDRRVTEAYYQQYLNPQ-RSSDPEALRIHGLT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFL+D+P F+ + F +F + I HNA FD+GF+N ELQ K PL ++DT Sbjct: 63 DEFLQDQPGFAEVADAFLEFLGDAE--LIIHNAPFDLGFLNHELQLAGKAPL-RQAVMDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L+ ARR+HP +NDLNSLC+RY + SHR HGALLD+ +L++VY+ M G + Sbjct: 120 LADARRRHPGQKNDLNSLCRRYSVENSHRELHGALLDTRILAEVYLAMTGGQVDMMGMLG 179 Query: 187 TNEDRFFKE--------EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 E + +P R R + EE H + +Q +G NA+W+ Sbjct: 180 AAGGSAATEMRSAGDDRRSEGIPAALSRPRGPLRVIRASAEECMLHRQYLQNMGGNALWE 239 >gi|157803402|ref|YP_001491951.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str. McKiel] gi|157784665|gb|ABV73166.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str. McKiel] Length = 229 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 130/228 (57%), Gaps = 11/228 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R EA ++HG++ Sbjct: 5 REIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGLS 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSRI 123 DEFLKDKP F +I +F +F ++ ++ I HNA FD+ F+N E L+R L+ + Sbjct: 64 DEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTEIKLLELANT 121 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +AR P ++ +L++LCKR+ + S R H AL D+ LL++VY+ + G Q F Sbjct: 122 IDTLVMARSMFPGAKYNLDALCKRFKVDNSGRQVHSALKDAALLAEVYVALTG-GRQSTF 180 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 DR + ++ + + + TKEEL +H I + Sbjct: 181 KIV---DRSIRINNLATHQVNNKTQQTTIVIKPTKEELQKHKDFINKI 225 >gi|300724515|ref|YP_003713838.1| DNA polymerase III subunit epsilon [Xenorhabdus nematophila ATCC 19061] gi|297631055|emb|CBJ91741.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Xenorhabdus nematophila ATCC 19061] Length = 249 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 89/244 (36%), Positives = 132/244 (54%), Gaps = 21/244 (8%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F +++ P R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRHFHIYIKPE-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+DEFL+DKP F+ I EF +F I HNA FD+GF++ E ++N+D Sbjct: 66 HGISDEFLQDKPLFADIADEFIEFIRGAE--LIIHNATFDIGFMDYEFSKLNRDIPPTAD 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +AR+ P RN+L++LC RY I S R+ HGALLD+ +LSDVY+ M G + Sbjct: 124 FCTITDSLMLARKLFPGKRNNLDALCDRYHIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKN--- 234 + F + V I + R + + EEL +H+ + + K Sbjct: 184 SLAFSMEGEVSS-----HALVSEIHKITRPQVGLKVIYASDEELTQHESRLDLVEKKGGS 238 Query: 235 AIWD 238 +W Sbjct: 239 CLWR 242 >gi|328474397|gb|EGF45202.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329] Length = 240 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 93/241 (38%), Positives = 138/241 (57%), Gaps = 20/241 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ PEA++ Sbjct: 11 RIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPEAIQ 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPL 118 +HGITDEFL DKP ++SI EF DF +AHNA FD GF++ E + Sbjct: 70 VHGITDEFLVDKPEYASIHQEFLDFIKGAE--LVAHNASFDTGFMDYEFEKLDPTIGKTD 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + + F K+E + R R T +EL+ H K ++ + + IW Sbjct: 188 TSLEFN-------ANKQEGGVETIRRIEGRKALKVLRATADELEAHQKRLELVN-DCIWH 239 Query: 239 R 239 + Sbjct: 240 Q 240 >gi|68248745|ref|YP_247857.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 86-028NP] gi|68056944|gb|AAX87197.1| DNA polymerase III, epsilon chain [Haemophilus influenzae 86-028NP] Length = 255 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 81/255 (31%), Positives = 126/255 (49%), Gaps = 14/255 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N +N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + DTL +AR+ + RN+L++LC+R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 KTDDICLVTDTLQMARQMYLGKRNNLDALCERLGIDNSKRTLHGALLDAEILADVYLMMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTLGK 233 G + + + ++KT I + T +EL H + ++ + K Sbjct: 178 GGQTNLFDEESVESEVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMNK 237 Query: 234 ----NAIWDRYISSN 244 N +W++ +N Sbjct: 238 KSGNNCLWEKRFGNN 252 >gi|148825595|ref|YP_001290348.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE] gi|229847255|ref|ZP_04467358.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1] gi|148715755|gb|ABQ97965.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE] gi|229809798|gb|EEP45521.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1] Length = 256 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 128/256 (50%), Gaps = 15/256 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N +N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177 Query: 176 VGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 G + + ++ R +E+ ++ + T +EL H + ++ L Sbjct: 178 GGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMLN 237 Query: 233 K----NAIWDRYISSN 244 K N +WD+ +N Sbjct: 238 KKSGNNCLWDKRFGNN 253 >gi|16272104|ref|NP_438306.1| DNA polymerase III subunit epsilon [Haemophilus influenzae Rd KW20] gi|1169396|sp|P43745|DPO3E_HAEIN RecName: Full=DNA polymerase III subunit epsilon gi|1573090|gb|AAC21808.1| DNA polymerase III, epsilon subunit (dnaQ) [Haemophilus influenzae Rd KW20] Length = 256 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 82/256 (32%), Positives = 128/256 (50%), Gaps = 15/256 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPD-RPX 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N +N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177 Query: 176 VGGSQINFGFKTNED---RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 G + + ++ E R +E+ ++ + T +EL H + ++ + Sbjct: 178 GGQTNLFDEEESVESGVIRVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMN 237 Query: 233 K----NAIWDRYISSN 244 K N +WD+ +N Sbjct: 238 KKSGNNCLWDKRFGNN 253 >gi|197103471|ref|YP_002128848.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1] gi|196476891|gb|ACG76419.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1] Length = 234 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 124/235 (52%), Gaps = 7/235 (2%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG D DR++EI +E+ D+ T R F ++ P R EA K+HG++ Sbjct: 3 REIVLDTETTGFDPLTGDRLVEIACLEIEDFIPTGRHFHAYIDP-CRDMPAEAEKVHGLS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 FL+ KP F + +A +AHNA FD F+N EL ++ L R IDT Sbjct: 62 TAFLRGKPKFEAPEIVEAFLDFVADAPIVAHNAAFDRAFVNYELGLCSRAELPDHRWIDT 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LCKR+ I+++ R KHGAL+D+ LL+ VY++ + GG + Sbjct: 122 LALAKQRFPGMHNSLDALCKRFKISLAEREKHGALIDTKLLAAVYLE-LRGGRERRLELT 180 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-AIWDRY 240 + S R +PL + EE H I+ + K+ +W ++ Sbjct: 181 S---SAAVSAVHAATRNSYGARPRPLAPLSSDEERAVHAAFIREVVKSEELWGKF 232 >gi|294675627|ref|YP_003576242.1| DNA polymerase III subunit epsilon [Rhodobacter capsulatus SB 1003] gi|294474447|gb|ADE83835.1| DNA polymerase III, epsilon subunit [Rhodobacter capsulatus SB 1003] Length = 231 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 97/235 (41%), Positives = 143/235 (60%), Gaps = 6/235 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + RI+EIGAVEL+++ T RT+ ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGFEPSEGHRIVEIGAVELMNHVPTGRTYHQYINPE-RAMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F +I +F DF + +++ + HNA FD+ F+NAEL + K L R +D Sbjct: 60 GDDFLRDKPKFGAIAQDFLDFIGD-DSKLVIHNAAFDMKFLNAELGWVQKPLLPMDRALD 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++ARRK P S L++LC+R+GI S R+ HGALLDS +L++VY++++ G Q FG Sbjct: 119 TLAMARRKFPGSPATLDALCRRFGIDNSARTLHGALLDSEILAEVYLELIG-GRQPGFGL 177 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 N D + + R PL R+T+ E + H + LG+ AIW R Sbjct: 178 --NIDPVQAKSAVSSTEWRPRPRPVPLPPRLTEAEAEAHAAFVAKLGEGAIWKRR 230 >gi|254361771|ref|ZP_04977906.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica PHL213] gi|261494027|ref|ZP_05990530.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496213|ref|ZP_05992619.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093306|gb|EDN74302.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica PHL213] gi|261308165|gb|EEY09462.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310193|gb|EEY11393.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 258 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 87/255 (34%), Positives = 137/255 (53%), Gaps = 17/255 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 M + +R++V D ETTG++ IIEIGAVE+++ T RT+ V++ P R+ Sbjct: 1 MTEEKIIRQVVLDTETTGMNMAGGPPQIGHNIIEIGAVEVINRRLTGRTYHVYIKPP-RE 59 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 EA+ +HGIT+EFL+DKP F+ I EF DF I HNA FDV F++ E + Sbjct: 60 VDEEAIAVHGITNEFLQDKPVFAEIAEEFLDFIKGAE--LIIHNAPFDVAFMDQEFSYLP 117 Query: 115 KDPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P + D+L +ARR +P RN+L++LC R GI S R HGALLD+ +L+DV+ Sbjct: 118 NPPAKTAEMCTVTDSLQMARRMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVF 177 Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 + M G + G + E + + + +L D+ + + EE + H ++ + Sbjct: 178 LMMTGGQISL-LGEEETEVVSEVIDIEEEFSAIVLNADEAIILKANDEEEESHLALLKLI 236 Query: 232 GK----NAIWDRYIS 242 K N +W + ++ Sbjct: 237 EKKSKGNCLWTKALT 251 >gi|241758776|ref|ZP_04756889.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114] gi|241320984|gb|EER57197.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114] Length = 245 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 119/243 (48%), Gaps = 13/243 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64 R+I+ D ETTGL + DR++E +E+++ T+ +++ P R E + Sbjct: 4 RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGLT 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 I K+ P F+ + + DF I HNAKFDVGF+N E +R+ ++ + Sbjct: 63 IEVLEAKNAPPFAQVGKQIADFIRGAE--LIIHNAKFDVGFLNMEFRRMGLPSIEELGCK 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQ---- 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 F E E K+TV + + + +EL H+K + LG+ +W + + Sbjct: 177 FDLMGGEAEEEGEVKQTVI-AETKRTSQLKVIKANADELAAHEKYLDDLGEACVWRKAET 235 Query: 243 SNQ 245 S++ Sbjct: 236 SDE 238 >gi|145633563|ref|ZP_01789291.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655] gi|144985769|gb|EDJ92383.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655] Length = 256 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 127/256 (49%), Gaps = 15/256 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N +N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177 Query: 176 VGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 G + + ++ R +E+ ++ + T +EL H + ++ L Sbjct: 178 GGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMLN 237 Query: 233 K----NAIWDRYISSN 244 K N +WD+ +N Sbjct: 238 KKSGNNCLWDKRFGNN 253 >gi|309750446|gb|ADO80430.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2866] Length = 256 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 127/256 (49%), Gaps = 15/256 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N +N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177 Query: 176 VGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 G + + ++ R +E+ ++ + T +EL H + ++ L Sbjct: 178 GGQTNLFDEEESVESEVIRVVQEKAAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMLN 237 Query: 233 K----NAIWDRYISSN 244 K N +WD+ +N Sbjct: 238 KKSGNNCLWDKRFGNN 253 >gi|153876055|ref|ZP_02003569.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. PS] gi|152067479|gb|EDN66429.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. PS] Length = 239 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 90/239 (37%), Positives = 131/239 (54%), Gaps = 15/239 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL K RIIEIG +E+L+ TN+ + FL P+ RK+ EAL +HGI Sbjct: 1 MRQIALDTETTGLSVKDGHRIIEIGCIEILNRRVTNKYYHQFLQPD-RKSDTEALAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122 T EFLKDKP F I ++F +F + HNA FD+ FIN EL+ +++D + Sbjct: 60 THEFLKDKPRFREIVNDFMNFIKGAE--LLIHNAAFDMSFINRELELLHQDWQPLEHYCK 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I D+L +A+ +HP +N+L++LCKRYG+ S+R HGALLD+ +L++VY+ M Sbjct: 118 ITDSLVLAKERHPGQKNNLDALCKRYGVDNSNRQLHGALLDAEILAEVYLTMTAEQ---- 173 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237 +E + K KR T+ EL H + + + K +W Sbjct: 174 VSLLASEGNNIEFLKNNTIKRISSKRASLTLITPTEGELQAHKQRLTAINKACGGKCLW 232 >gi|294085203|ref|YP_003551963.1| DNA polymerase III subunit epsilon [Candidatus Puniceispirillum marinum IMCC1322] gi|292664778|gb|ADE39879.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Candidatus Puniceispirillum marinum IMCC1322] Length = 255 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 84/260 (32%), Positives = 127/260 (48%), Gaps = 32/260 (12%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTG++ + RIIEIG +ELL + T +++ P R+ A+K+HG+ Sbjct: 1 MREIALDTETTGINPRDGHRIIEIGCLELLHHLPTGNKLHIYINPE-REIDEGAVKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T FL DKP F+ I EF F HNA FD+GF+NAEL R+++ L R +D Sbjct: 60 TSAFLADKPLFADIVDEFLAFIGGDQMV--IHNASFDMGFLNAELARLDRPVLPMDRAVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR+K P ++ +L++LC+R+ I HR HGAL+D+ LL+ VYI+++ G Q G Sbjct: 118 TLMMARKKFPGAQANLDALCRRFEIDNGHRDLHGALIDADLLASVYIELLG-GKQPGLGL 176 Query: 186 KT--------------------------NEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 ++ +S + E Sbjct: 177 DNGTGSGARSRAGPAGSAGSLGSAGWSGSDHGAETANGTGHFAMSETAIRPIRTHAPSPE 236 Query: 220 ELDEHDKTIQTLGKNAIWDR 239 E HD + + +N IW + Sbjct: 237 EQAAHDAFLDGM-ENPIWRQ 255 >gi|254560605|ref|YP_003067700.1| DNA polymerase III subunit epsilon [Methylobacterium extorquens DM4] gi|254267883|emb|CAX23749.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens DM4] Length = 236 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 89/239 (37%), Positives = 137/239 (57%), Gaps = 10/239 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG +++ DR+IEIG VEL+++ +T TF + P R S A +HGI+ Sbjct: 3 REIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGAFAVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSRI 123 D L DKP F+ + F +F + + HNA FDVGF+N E + + Sbjct: 62 DAMLADKPVFAEVVDAFLEFCGDAR--LVIHNAPFDVGFLNMEFARLGPAAPKAIALEDV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +ARRKHP + N+L++LC RYG+ + R KHGALLD+ +L++VY++++ G Q + Sbjct: 120 VDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELLG-GKQTSL 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 G E + S +P+ +R+T+ E HD +++LG NA+W Y+ Sbjct: 179 GLSIAE--PAETVTLGALTDSGPVGPRPMRSRLTEGERLRHDSFVESLGTNAVWREYME 235 >gi|260583276|ref|ZP_05851052.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127] gi|260093683|gb|EEW77595.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127] Length = 256 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 15/256 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N +N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + DTL +AR+ +P R++L++LC+R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRSNLDALCERLGIDNSKRTLHGALLDAEILADVYLMMT 177 Query: 176 VGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 G + + ++ R +E+ ++ + T +EL H + ++ + Sbjct: 178 GGQTNLFDEEESVESEVIRVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMN 237 Query: 233 K----NAIWDRYISSN 244 K N +W++ +N Sbjct: 238 KKSGNNCLWEKRFGNN 253 >gi|225075242|ref|ZP_03718441.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens NRL30031/H210] gi|224953417|gb|EEG34626.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens NRL30031/H210] Length = 245 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 123/241 (51%), Gaps = 9/241 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T+ +++ P R EA K+HG+T Sbjct: 4 RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGLT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124 E L+ K + + AE I HNAKFDVGF+N E +R+ ++ ++ Sbjct: 63 IEVLEAKNAPPFAQVGKQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCKVT 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M F Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQ----FD 178 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 E E K+TV + + + +EL H+K + LG+ +W + +S+ Sbjct: 179 LMGGEAEEEGEVKQTVI-AETKRTSQLKVVKANADELAAHEKYLDDLGEACVWRKAETSD 237 Query: 245 Q 245 + Sbjct: 238 E 238 >gi|329296922|ref|ZP_08254258.1| DNA polymerase III subunit epsilon [Plautia stali symbiont] Length = 237 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 126/242 (52%), Gaps = 15/242 (6%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T F ++L P+ R Sbjct: 1 MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLV 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI DEFL DKP+F+ I EF D+ + HNA FD+GF++ E + + Sbjct: 59 DPEAFGVHGIADEFLADKPTFAQIADEFLDYIRGAE--LVIHNASFDIGFMDYEFAMLQR 116 Query: 116 DP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 D +I D+L++A + P RN L++LC R+ I S R+ HGALLD+ +L++V++ Sbjct: 117 DIGKTETFCQITDSLAMASKMFPGKRNSLDALCNRFEIDNSKRTLHGALLDAGILAEVFL 176 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M + + F + + + E + + EE+ H+ + + Sbjct: 177 TMTGCQTSLAFSMEGEQSNQVEGEHIQRI---VRPGAGLRVVSASDEEIVAHESRLDLVQ 233 Query: 233 KN 234 K Sbjct: 234 KK 235 >gi|315497200|ref|YP_004086004.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB 48] gi|315415212|gb|ADU11853.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB 48] Length = 232 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 97/233 (41%), Positives = 140/233 (60%), Gaps = 8/233 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D K R+IE+G +E+ D T +TF + P R P+A+++HGI Sbjct: 1 MRQIVLDTETTGIDPKKGHRLIEVGCIEIEDLLPTGKTFHHYFNPE-RLIEPDAIRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE + DKP F+ + F DF + A IAHNA FD GFIN EL+R+ DP DP R +D Sbjct: 60 TDEMVADKPKFADLAQAFIDFVGD--APIIAHNASFDRGFINMELERLGLDPTDPDRWVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR K P N L++LCKRY I+++ R KHGALLD+ LL+ VY++ + GG + Sbjct: 118 TLELARYKFPGMANSLDALCKRYNISLAERDKHGALLDARLLAGVYLE-LSGGKERGLDL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT-IQTLGKNAIW 237 K + E+ + ++ +R +PL + I EE + H ++ L +W Sbjct: 177 KMH--GMVSEDGTEIRVMNHGQRPRPLPSHIHPEEAEAHKAFCLKYLKDQNMW 227 >gi|145637904|ref|ZP_01793548.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH] gi|145268904|gb|EDK08863.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH] Length = 256 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 127/256 (49%), Gaps = 15/256 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N +N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177 Query: 176 VGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 G + + ++ R +E+ ++ + T +EL H + ++ L Sbjct: 178 GGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMLN 237 Query: 233 K----NAIWDRYISSN 244 K N +WD+ +N Sbjct: 238 KKSGNNCLWDKRFGNN 253 >gi|254499192|ref|ZP_05111872.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12] gi|254351582|gb|EET10437.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12] Length = 232 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 113/230 (49%), Gaps = 6/230 (2%) Query: 7 MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+ + R+IEIG VEL+D T R F V+L P R A ++HGI Sbjct: 1 MRQIVLDTETTGIGHEQGHRVIEIGCVELIDRKLTGRHFHVYLNPE-RLVDEGAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +DEFL+DKP F+ SEF F + K D + D Sbjct: 60 SDEFLQDKPLFADKVSEFLQFVGGAELIIHNAAFDMGFLNSELRHVQWKKKLEDYCDVFD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+ AR K P RN L++LCKR+GI +R HGALLD+ +L+ VY+ M G S Sbjct: 120 TLTYARDKFPGQRNSLDALCKRFGIDHFNRQLHGALLDAEILAFVYLAMTGGQSS----L 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + + V I+ L+ P+ ELD+H ++ L K + Sbjct: 176 FADVEENANNTTVKVQEIAALRLANPIVVLAEANELDQHQIFVEFLTKKS 225 >gi|94502173|ref|ZP_01308671.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65] gi|94425698|gb|EAT10708.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65] Length = 237 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 117/229 (51%), Gaps = 3/229 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR++V D ETTG+ RIIEIG VEL+ T R + ++ P R+ PEA+++HGIT Sbjct: 1 MRQVVLDTETTGIG-DGHRIIEIGCVELVGRKLTGRHYHQYINPQ-REVDPEAMEVHGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFL DKP F+ + +EF DF N + + ++DT Sbjct: 59 DEFLADKPVFAQVANEFLDFINGAELVIHNAPFDVGFMDMEFAKLSNFPKTAEVCGVLDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++AR+ +P RN L++LC+R GI SHR HGALLDS +L+DVY+ M G + ++ Sbjct: 119 LTLARKMYPGQRNSLDALCRRLGIDNSHRELHGALLDSEILADVYLLMTGGQTALSLA-S 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + E + + +T +E +H + ++ L A Sbjct: 178 EDASTEGSHELSVKVLVDQSQVANLPSWGVTDDEARQHQEYLELLATKA 226 >gi|89067418|ref|ZP_01154931.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Oceanicola granulosus HTCC2516] gi|89046987|gb|EAR53041.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Oceanicola granulosus HTCC2516] Length = 230 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 95/234 (40%), Positives = 139/234 (59%), Gaps = 8/234 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL ++ T RT+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPEDGDRIVEIGAVELDNHMPTGRTYHQYINPQ-RAMPREAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL DKP F+ I F DF + + HNA FD+ F+NAEL N L S+ +D Sbjct: 60 GDEFLADKPVFARIGRAFLDFVGDAR--LVIHNASFDMKFLNAELGWANLPRLPDSQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+++AR K P S L++LC+R+GI S R+ HGALLDS +L++VY++++ G Q +F Sbjct: 118 TVAMARSKFPGSPVSLDALCRRFGIDNSARTYHGALLDSEILAEVYLELIG-GRQPDFAL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 ++ + + + R +PL RIT E H I+ LG+ ++W R Sbjct: 177 SVSQVGGGEAGQD---DWRPRPRPEPLPPRITAAEAAAHQAFIEKLGEASLWAR 227 >gi|82702745|ref|YP_412311.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC 25196] gi|82410810|gb|ABB74919.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC 25196] Length = 234 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 110/243 (45%), Gaps = 15/243 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL+ K RIIEIGAVE++ T R F +L P R+ AL++HGI Sbjct: 1 MRQIFIDTETTGLEPKLGHRIIEIGAVEMMSRRLTGRRFHHYLNPE-REIEEGALQVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DK F+ + E +F + L + + D Sbjct: 60 TSEFLLDKRKFADVVHELLEFIDGAELIMHNAAFDVAFLDHELGLANLPALCECCHSVTD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +A+ P RN L++LC+RY + S R+ HGALLD+ LL++VY+ M G + Sbjct: 120 TLKMAKELFPGKRNSLDALCERYEVDNSRRALHGALLDAELLAEVYLAMTRGQESLLMEL 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRYI 241 + + + + EEL+ H + ++ + K +W R Sbjct: 180 EAPSPLDLDISLHDLQ---------LVVLPASAEELEAHARQLEMIEKESKGKCLWMRLD 230 Query: 242 SSN 244 + Sbjct: 231 PAE 233 >gi|325578763|ref|ZP_08148810.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus parainfluenzae ATCC 33392] gi|325159587|gb|EGC71719.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus parainfluenzae ATCC 33392] Length = 253 Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 6/233 (2%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T F +++ P+ R P+A+K+ Sbjct: 6 RQIVLDTETTGMNQIGAHYEGHCIIEIGAVEMINRKYTGNNFHIYIKPD-RLVDPDAIKV 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGITDE L DKP F +I +F ++ ++ D Sbjct: 65 HGITDEMLADKPDFKTIAQDFIEYIRGAELLIHNAPFDVGFMDYEFRKLGLDIKTTDICL 124 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL +AR+ +P RN L++LC R GI S R+ HGALLD+ +L+DVY+ M G + + Sbjct: 125 VTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLSMTGGQTSLF 184 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + ++ + T +EL H I+ + K + Sbjct: 185 DEEHADSSIIQTTANVQDLQSAVNFSQNLKVLQPTDDELQAHLDFIKLVNKKS 237 >gi|88813349|ref|ZP_01128587.1| DNA polymerase III, epsilon subunit [Nitrococcus mobilis Nb-231] gi|88789407|gb|EAR20536.1| DNA polymerase III, epsilon subunit [Nitrococcus mobilis Nb-231] Length = 245 Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 87/241 (36%), Positives = 125/241 (51%), Gaps = 13/241 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ R+IEIG EL + RTF +L P+ R+ P A+++HGI Sbjct: 1 MRQIVLDTETTGLEPADGHRVIEIGCYELCYRRASGRTFHHYLNPD-REVEPGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122 T+EFL DKP F I ++F +F + I HNA FDVGF++ E R+ D + Sbjct: 60 TNEFLADKPRFCDIATDFIEFIRDAE--LIIHNAPFDVGFLDYEFSRLTGSWGRLADYCQ 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR +HP RN L++LC RY + + RS HGALLD+ LL++VY+ M Q Sbjct: 118 VTDTLALARERHPGQRNSLDALCTRYAVDNAQRSLHGALLDAQLLAEVYLLMTG--GQTA 175 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 ++ R + R + E EH + L G +W Sbjct: 176 LSLESGAGLSADLALVGGVRRLDPARPRLPVVRASSAEQAEHRHWLDELDQAVGGCCVWR 235 Query: 239 R 239 + Sbjct: 236 Q 236 >gi|223041838|ref|ZP_03612026.1| DNA polymerase III subunit epsilon [Actinobacillus minor 202] gi|223017331|gb|EEF15754.1| DNA polymerase III subunit epsilon [Actinobacillus minor 202] Length = 255 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 88/252 (34%), Positives = 133/252 (52%), Gaps = 17/252 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M+ + R++V D ETTG++ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MLEQEIHRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKPSF+ I EF F + HNA FDVGF++ E + Sbjct: 60 EEEAIKVHGITNEFLQDKPSFAEIVDEFVAFIKGAE--LVIHNAPFDVGFMDHEFSFLAN 117 Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCTVTDSLALARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M QI + D + + + + + EL+ H ++ L Sbjct: 178 MMTG--GQIALLAEEEHDENPQVDLLEEGPKIAFDTSNSVILKADESELEAHQLFLKLLY 235 Query: 233 K----NAIWDRY 240 K N IW + Sbjct: 236 KKSKQNCIWGKR 247 >gi|145639808|ref|ZP_01795410.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII] gi|145271176|gb|EDK11091.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII] Length = 256 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 82/256 (32%), Positives = 127/256 (49%), Gaps = 15/256 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N +N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177 Query: 176 VGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 G + + ++ R +E+ ++ + T +EL H + ++ + Sbjct: 178 GGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMMN 237 Query: 233 K----NAIWDRYISSN 244 K N +WD+ +N Sbjct: 238 KKSGNNCLWDKRFGNN 253 >gi|91223500|ref|ZP_01258765.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] gi|254228411|ref|ZP_04921837.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25] gi|262393546|ref|YP_003285400.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] gi|269966277|ref|ZP_06180366.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B] gi|91191586|gb|EAS77850.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] gi|151938999|gb|EDN57831.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25] gi|262337140|gb|ACY50935.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] gi|269829192|gb|EEZ83437.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B] Length = 240 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 91/241 (37%), Positives = 137/241 (56%), Gaps = 20/241 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ PEA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPEAVE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPL 118 +HGITDEFL DKP ++S+ EF +F +AHNA FD GF++ E Sbjct: 70 VHGITDEFLVDKPEYASVHQEFLEFIKGAE--LVAHNAPFDTGFMDYEFGMLDPNIGKTD 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLFMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + + F K+E + R R + +EL+ H K ++ + + IW Sbjct: 188 TSLEFN-------ANKQEGGVETIRRIEGRKALKVLRASADELEAHQKRLELVN-DCIWH 239 Query: 239 R 239 + Sbjct: 240 Q 240 >gi|148358915|ref|YP_001250122.1| DNA polymerase III subunit epsilon [Legionella pneumophila str. Corby] gi|296106963|ref|YP_003618663.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99 Alcoy] gi|148280688|gb|ABQ54776.1| DNA polymerase III, epsilon subunit [Legionella pneumophila str. Corby] gi|295648864|gb|ADG24711.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99 Alcoy] Length = 233 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 118/230 (51%), Gaps = 6/230 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTG+ + R+IEIG +EL+D T + F ++L P R+ A ++HGI Sbjct: 1 MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL+DKP F I +EF F + + NK D RI+D Sbjct: 60 STEFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR KHP RN L++LCKRY I +R HGALLD+ +L+ VY+ M G S Sbjct: 120 TLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSS----L 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 T + K I L KP+ + +EEL +H ++ + K + Sbjct: 176 FTEVESSMSHSKIKTQEIKSLSLKKPVIMKANEEELIQHQSFVEFISKKS 225 >gi|270156747|ref|ZP_06185404.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968] gi|289164806|ref|YP_003454944.1| DNA polymerase III, epsilon chain [Legionella longbeachae NSW150] gi|269988772|gb|EEZ95026.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968] gi|288857979|emb|CBJ11839.1| putative DNA polymerase III, epsilon chain [Legionella longbeachae NSW150] Length = 233 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 118/230 (51%), Gaps = 6/230 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTG+ + R+IEIG VEL+D T F V+L P R A ++HGI Sbjct: 1 MRQVVLDTETTGIGHEHGHRVIEIGCVELIDRKLTGNHFHVYLNPQ-RLVDEGAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++EFL+DKP F+ + +FW F + +L NK +I D Sbjct: 60 SNEFLQDKPLFADVAEKFWRFISGAELIIHNAPFDVGFLNSELQLINWNKKLEVYCKITD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR K+P RN L++LCKRYGI +R HGALLD+ +L+ VY+ M G + + Sbjct: 120 TLVLAREKYPGQRNSLDALCKRYGIDHFNRELHGALLDAEILAFVYLAMTGGQTSLFAEV 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + + ++TV L + + + EEL+ H I L K + Sbjct: 180 EETSLHVNSKSQETVA----LHLENSVVLPASAEELESHQLFIDFLHKKS 225 >gi|94676582|ref|YP_588911.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219732|gb|ABF13891.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 240 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 81/239 (33%), Positives = 120/239 (50%), Gaps = 10/239 (4%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV DIETTG++ RIIEIGAVE+++ T + F V+L P R EA K+ Sbjct: 3 RQIVLDIETTGINKLGVHYYGHRIIEIGAVEIINRRITGKNFHVYLNPE-RFIDQEAFKI 61 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI++ FLKDKP+F+ + + F ++ +L + + Sbjct: 62 HGISNNFLKDKPTFAQVADKLITFISQSELVIHHAPFDIGFIDYEFKLLNRSMISKTFVQ 121 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL +AR+ P RN L++LC RY I HR+KHGALLD+ +L+++Y+ M G + IN Sbjct: 122 VTDTLLLARKIFPGKRNSLDALCNRYHIKNIHRTKHGALLDAKILAEIYLIMTGGQTSIN 181 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238 F T E ++ K L DK +EL EH + + K +W Sbjct: 182 FNL-TQESNIEQKYKGKNIYFPLSHEDKLKVIYANNKELSEHRNILDRIEKQNSKCLWK 239 >gi|149927491|ref|ZP_01915745.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] gi|149823764|gb|EDM82990.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] Length = 240 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 112/245 (45%), Gaps = 15/245 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTGL+ + RIIEIG +E+ T+ F ++ P R+ A ++HGI Sbjct: 1 MRYVVLDTETTGLEVRQGHRIIEIGCIEVNGRQVTDHHFHQYINPE-REVDEGAFQVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +DE L DKP F I +F DF + E + K +ID Sbjct: 60 SDEMLADKPKFKQIAKDFLDFVQGSTLIIHNASFDIGFLDGELERLGLGKMADYVDGVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L +AR P RN+L++LC R G+ +HR HGALLDS +L++VY+ M G + Sbjct: 120 SLGMAREMFPGKRNNLDALCDRLGVNNAHRQLHGALLDSQILAEVYLAMTRGQDSLVIDL 179 Query: 186 KT-NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDRY 240 ++D + K + N+ + + H + + K A +W + Sbjct: 180 NAQHDDDGVERIKLSALNLPEPEPTEEELV--------LHQAYLADIEKAAKGPSVWSKI 231 Query: 241 ISSNQ 245 + + Sbjct: 232 SQATE 236 >gi|300703774|ref|YP_003745376.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum CFBP2957] gi|299071437|emb|CBJ42756.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum CFBP2957] Length = 242 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 112/238 (47%), Gaps = 11/238 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR+IEIG VEL++ T R ++ P R+ A+ +HGI Sbjct: 1 MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+EF+ DKP F+ + +E D+ A + + ID Sbjct: 60 TNEFVADKPKFAEVVAEIRDYVQGAEAIIHNAAFDLGFLDMEFRRLGLPSFREHLDGHID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL ARR P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G + + Sbjct: 120 TLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDM 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239 + E L + T+ E H ++ + K +W R Sbjct: 180 LEGGETAATEAAAVD-----LSGLELPILLATEVEATAHATVLKEIDKASGGKTVWSR 232 >gi|153840553|ref|ZP_01993220.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] gi|149745784|gb|EDM56914.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] Length = 229 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 93/239 (38%), Positives = 138/239 (57%), Gaps = 20/239 (8%) Query: 10 IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ PEA+++H Sbjct: 2 VVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPEAIQVH 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDP 120 GITDEFL DKP ++SI EF DF +AHNA FD GF++ E + I D Sbjct: 61 GITDEFLVDKPEYASIHQEFLDFIKGAE--LVAHNAPFDTGFMDYEFEKLDPIIGKTDDY 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G + Sbjct: 119 CKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 178 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + F K+E + R R T +EL+ H K ++ + + IW + Sbjct: 179 LEFN-------ANKQEGGVETIRRIEGRKALKVLRATADELEAHQKRLELVN-DCIWHQ 229 >gi|261364618|ref|ZP_05977501.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996] gi|288567207|gb|EFC88767.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996] Length = 239 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 98/235 (41%), Gaps = 8/235 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64 R+I+ D ETTGL ++ DR++E +E+++ T R +++ P R E + Sbjct: 3 RQIILDTETTGLYAENGDRLVEFAGLEMVNRQMTGRFLHLYVHPQ-RDMPEEAARVHGLT 61 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I K+ P F+ + E +F + + I Sbjct: 62 IDVLEEKNAPPFAKVGQEISEFIRGAELIIHNAKFDVGFLNMEFRRMGLPSVEELGCEIT 121 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR P + L++LC R I S R HGAL+D LL +VY+ M F Sbjct: 122 DTLAMAREMFPGQKASLDALCNRLSIDRSKRVLHGALIDCELLGEVYLAMTRQQ----FD 177 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 E +E K V + + EEL+EH+K + LG+ IW + Sbjct: 178 LMGGESEEETKEDKPVIIAETKRSSSLKVIKANSEELEEHEKYLDALGEPCIWRQ 232 >gi|261380159|ref|ZP_05984732.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703] gi|284796997|gb|EFC52344.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703] Length = 245 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 13/243 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64 R+I+ D ETTGL + DR++E +E+++ T+ +++ P R E + Sbjct: 4 RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGLT 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 I K+ P F+ + + DF I HNAKFDVGF+N E +R+ ++ + Sbjct: 63 IEVLEAKNAPPFAQVGKQIADFIRGAE--LIIHNAKFDVGFLNMEFRRMGLPSIEELGCK 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQ---- 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 F E E K+TV + + + +EL H+K + LG+ +W + + Sbjct: 177 FDLMGGEAEEEGEVKQTVI-AETKRTSQLKVIKANADELAAHEKYLDDLGEACVWRKAET 235 Query: 243 SNQ 245 ++ Sbjct: 236 PDE 238 >gi|261377592|ref|ZP_05982165.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685] gi|269146340|gb|EEZ72758.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685] Length = 244 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 103/248 (41%), Gaps = 13/248 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE- 58 MI+ R+I+ D ETTGL + DR++E +E+++ T++ +++ P R E Sbjct: 1 MIK----RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYIHPE-RDMPEEA 55 Query: 59 -ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + I K+ P F+ + + DF + + Sbjct: 56 ARVHGLTIEVLEGKNAPPFARVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVE 115 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 I DTLS+AR P + L++LC R+ + S R HGAL+D LL +VY+ M Sbjct: 116 ELGCTITDTLSMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQ 175 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + E K V + + K + + EL H++ + LG++ IW Sbjct: 176 QFDL-----MGEAEEEGPAAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGESCIW 230 Query: 238 DRYISSNQ 245 + ++ Sbjct: 231 RKEAVPSE 238 >gi|71083046|ref|YP_265765.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062] gi|91762529|ref|ZP_01264494.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002] gi|71062159|gb|AAZ21162.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062] gi|91718331|gb|EAS84981.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002] Length = 223 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 125/230 (54%), Gaps = 12/230 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M++++ D ETTGL + RI+EIG +EL + T F +L P RK S +AL++HG Sbjct: 1 MKEVILDTETTGLSVRDGHRIVEIGCIELENLIPTKNRFHCYLNPE-RKVSEKALEVHGY 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDEFL F I EF F + + HNA+FD+ +N EL + K+ L+ ++D Sbjct: 60 TDEFLSTHKKFGDIVDEFLVFIENKR--LVIHNAEFDLSHLNNELSLLGKEKLNSENVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR K P S L++LCKRY I S R++H AL+D LL+ VYI ++ + F Sbjct: 118 TLALARDKFPGSPISLDALCKRYRIDNSKRTQHTALIDCDLLAKVYINLL-DQKEPTLNF 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-LGKN 234 K + +K + N + R + ++ EL H + ++ L KN Sbjct: 177 KNED------NEKIIINSNDTNRYYKKVVKPSEAELKLHKEYLKNSLKKN 220 >gi|255019824|ref|ZP_05291900.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC 51756] gi|254970753|gb|EET28239.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC 51756] Length = 243 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 135/246 (54%), Gaps = 11/246 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTG+D + R+IEIGAVEL+D T +Q +L P GR + PEAL++HGI Sbjct: 1 MRQVVLDTETTGIDPRQGHRVIEIGAVELVDREITEGRYQQYLNP-GRSSDPEALRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL D+P F+ I +F F + I HNA FD+ F+NAEL+R+ + L D Sbjct: 60 RDDFLADQPDFADIVEDFLAFLGDAE--LIIHNAPFDLAFLNAELERVGRPALQNPVR-D 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL ARR+HP +NDL++LC+RYG+ S R +HGALLD +L++VY++M G + Sbjct: 117 TLVEARRRHPGQKNDLDALCRRYGVDNSRRQQHGALLDCEILAEVYLRMSGGQLGMRLAA 176 Query: 186 KTNEDRFFKEEKK------TVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 E+ + +R R EL H+ ++ LG A+W Sbjct: 177 DREAQGPSVAEEGQAGAPFQAHAQAADRRRPLRLRRADAAELAAHEAYLRGLGGKALWRE 236 Query: 240 YISSNQ 245 Q Sbjct: 237 ESPGEQ 242 >gi|170750672|ref|YP_001756932.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans JCM 2831] gi|170657194|gb|ACB26249.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans JCM 2831] Length = 240 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 97/242 (40%), Positives = 137/242 (56%), Gaps = 10/242 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG ++K DR+IEIGAVELL++ T RTF + P R S A +HG++ Sbjct: 3 REIVLDTETTGTEAKGGDRLIEIGAVELLNHIPTGRTFHRYCNPQ-RPVSEGAFNVHGLS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSRI 123 D FL DKP F+ I E F + + HNA FDVGF+N E R P+ + Sbjct: 62 DAFLADKPVFAEIVGELLAFLADGR--LVIHNAPFDVGFLNMEYARLGANAPPPIQLEDV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +ARRKHP + N+L++LC RYGI + R+KHGALLD+ +L++VY++++ G Q + Sbjct: 120 VDTLPMARRKHPGAANNLDALCARYGIDNTRRTKHGALLDAQILAEVYVELLG-GKQTSL 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 G E + +P +R+T E HD +LG AIW YI + Sbjct: 179 GLLEAEKAAPAAGSTALAAAPAA--PRPYRSRLTDAERARHDSFRASLGPAAIWADYIGA 236 Query: 244 NQ 245 + Sbjct: 237 DD 238 >gi|124267443|ref|YP_001021447.1| DNA polymerase III subunit epsilon [Methylibium petroleiphilum PM1] gi|124260218|gb|ABM95212.1| DNA polymerase III, epsilon subunit [Methylibium petroleiphilum PM1] Length = 234 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 12/236 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I D ETTGL + DRIIEIG VE+L + +L P R+N +A+K+HG+T Sbjct: 3 RQIFLDTETTGLSPENGDRIIEIGCVEMLSRRLSGNNRHFYLNPE-RRNHEDAVKIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFL DKP F+ + E ++ + + + + D+ Sbjct: 62 DEFLADKPKFAVVADELMEYLAGAEIIIHNAAFDVGFLDAELKRLQRPRFAEQVGAVTDS 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++AR P N L++LCKR + + R+ HGALLD+ LL++VYI+M G + + Sbjct: 122 LTMAREMFPGKSNSLDALCKRLEVDNASRTLHGALLDAGLLAEVYIRMTRGQNSLVIDAG 181 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 + + + +E H+ + L K +W Sbjct: 182 AASGGAIAVADIDLRQFA------LPVIEPSDDERQAHEAVLAELDKVSGGKTLWR 231 >gi|313668102|ref|YP_004048386.1| DNA polymerase III, epsilon chain [Neisseria lactamica ST-640] gi|313005564|emb|CBN87000.1| DNA polymerase III, epsilon chain [Neisseria lactamica 020-06] Length = 244 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 102/241 (42%), Gaps = 9/241 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R E + Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I K+ P F+ + + DF + + + Sbjct: 63 IQVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M F Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQ----FD 178 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 +++ + V + + K + + EL H+K + LG++ IW + + Sbjct: 179 LMGEDEKEEPAAQPAVS-AEMKRSAKLKVVKADEAELAAHEKYLDGLGESCIWRKEAVPS 237 Query: 245 Q 245 + Sbjct: 238 E 238 >gi|54310042|ref|YP_131062.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9] gi|46914481|emb|CAG21260.1| Putative DNA polymerase III, epsilon subunit [Photobacterium profundum SS9] Length = 246 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 135/248 (54%), Gaps = 16/248 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R IV D ETTG++ + IIEIGAVE+++ T +F V++ P+ R Sbjct: 5 MKATNQRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEIINRKLTGNSFHVYIKPD-RTIE 63 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 EA+ +HGITDEFL KP + + EF +F +AHNA FDVGF++ E +++N + Sbjct: 64 VEAIGVHGITDEFLIGKPVYKEVHDEFLEFIKGAE--LVAHNAPFDVGFMDYEFRKLNPN 121 Query: 117 P---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 122 IGKTEDFCKVTDTLAMAKKIFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLL 181 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 M G + + + E ++ R + +E++ H+ + + K Sbjct: 182 MTGGQTSLAL---SAEREDRDAGTESEIKRIASGRKLLKVLHASADEIEAHESRLDIISK 238 Query: 234 NA--IWDR 239 + +W + Sbjct: 239 KSDVMWRQ 246 >gi|88606785|ref|YP_505310.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ] gi|88597848|gb|ABD43318.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ] Length = 244 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 83/234 (35%), Positives = 129/234 (55%), Gaps = 10/234 (4%) Query: 6 KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K+R+IV D ETTGLD+ DRIIEIG VEL+DY T R F ++ P R S A ++HG Sbjct: 2 KVREIVLDTETTGLDADGGDRIIEIGCVELVDYVMTGRVFHKYIDPE-RDISVAATRVHG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT E L P F+ + E DF + + + HNA+FD+ F+ E++R++ + I+ Sbjct: 61 ITRESLIGMPKFAEVADELLDFLQD--SALVIHNARFDMRFLEVEIERLSNKRAITNTIV 118 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINF 183 DTL +AR+K P L++LCKR+ I+ R HGAL D+ LL+ VY++++ ++ F Sbjct: 119 DTLEMARKKFPGMPASLDALCKRFNISTQERKFHGALKDATLLARVYVELLEALQRRLVF 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + ++ + + R ++ EE H +T+ + KN IW Sbjct: 179 SQEGDDSKQVSVIHDKAKRVVYPAR----TFTLSSEEKRLHRQTVSKM-KNPIW 227 >gi|153835770|ref|ZP_01988437.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01] gi|156975479|ref|YP_001446386.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116] gi|148867537|gb|EDL66875.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01] gi|156527073|gb|ABU72159.1| hypothetical protein VIBHAR_03210 [Vibrio harveyi ATCC BAA-1116] Length = 238 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 93/239 (38%), Positives = 139/239 (58%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ P+A+ Sbjct: 11 RIVVLDTETTGMNLEGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPDAIG 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118 +HGITDEFL DKP +S++ EF DF +AHNA FD GF++ E + +N Sbjct: 70 VHGITDEFLVDKPEYSAVHQEFLDFIKGAE--LVAHNAPFDTGFMDYEFEMLNPSIGKTD 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTG-- 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 Q + F N+ E + V R R T +E++ H K ++ + ++IW Sbjct: 186 GQTSLEFNANKKDGEAEGIRRVEG-----RKALKVLRATADEVEAHQKRLELVN-DSIW 238 >gi|298369358|ref|ZP_06980676.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298283361|gb|EFI24848.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 240 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 15/242 (6%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64 R+I+ D ETTGL ++ DR++E +E+++ T+ +++ P R E + Sbjct: 4 RQIILDTETTGLYAEGGDRLVEFAGLEMINRQMTDNNLHLYIHPE-RDMPEEAAKVHGLT 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 I K+ P F+ + + DF + I HNAKFD+GF+N E +R+ ++ Sbjct: 63 IEVLEEKNAPPFAEVGRQIADFIRDAE--LIIHNAKFDIGFLNMEFRRMGLPSIEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R + S R HGAL+D LL +VY+ M Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRLSVDRSKRVLHGALIDCELLGEVYLAMTRQQ---- 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 F ++E+ I+ KR + EEL H++ + LG+ +W + Sbjct: 177 --FDLMGGEKEEDEEVKPVIIAETKRPAHLKVIKANAEELAAHEQYLDGLGEACLWRKAE 234 Query: 242 SS 243 ++ Sbjct: 235 TA 236 >gi|269958788|ref|YP_003328576.1| DNA polymerase III, epsilon subunit [Anaplasma centrale str. Israel] gi|269848618|gb|ACZ49262.1| DNA polymerase III, epsilon subunit [Anaplasma centrale str. Israel] Length = 232 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 90/239 (37%), Positives = 135/239 (56%), Gaps = 11/239 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGLD+ DRIIEIG VEL+D+ T + F ++ P R A K+HGIT Sbjct: 4 REIVLDTETTGLDAASGDRIIEIGCVELVDFVMTGQVFHKYINPE-RDIPIAATKIHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +K+ P F+ + +F +F + + + HNA FD+ FI E++RI K L + ++DT Sbjct: 63 TDMVKNMPKFAEMADQFLNFVQD--SVLVIHNAGFDLKFIETEMERIGKTKL-YNPVVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +ARRK P L++LCKR+ I+ S R HGAL D+ LL+ VY+++ G Q + GF Sbjct: 120 LEVARRKFPGMPASLDALCKRFDISTSSRRFHGALKDATLLARVYVELCG-GIQRSLGFV 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245 E +E N S P I+ E H ++I + K+ IW+ Y+ ++ Sbjct: 179 DGELNQSTKEN----NASKPVLQAPRTFTISDLEHKLHMESISKM-KDPIWNMYLKTSD 232 >gi|309378712|emb|CBX22662.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 244 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 102/241 (42%), Gaps = 9/241 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R E + Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I K+ P F+ + + DF + + + Sbjct: 63 IEVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M F Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQ----FD 178 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 +++ + V + + K + + EL H+K + LG++ IW + + Sbjct: 179 LMGEDEKEEPAAQPAVS-AEMKRSAKLKVVKADEAELAAHEKYLDGLGESCIWRKEAVPS 237 Query: 245 Q 245 + Sbjct: 238 E 238 >gi|254522635|ref|ZP_05134690.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14] gi|219720226|gb|EED38751.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14] Length = 243 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 89/239 (37%), Positives = 126/239 (52%), Gaps = 13/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +RI+EIG VEL T + ++ P+ + A ++ G+ Sbjct: 1 MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDC-EFEQGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 T EFL DKP F+ I EF F + I HNA FD+GF++ EL D Sbjct: 60 TLEFLDDKPGFAQIADEFLAFIDGAE--LIIHNAAFDLGFLDNELSLLGPQYGKITDRCT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDTL++AR + P RN L++LCKR G+ SHR+ HG LLD+ +L DVYI + G +I Sbjct: 118 VIDTLAMARERFPGQRNSLDALCKRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 FG + + LL R + T EL+ H ++ L K A+WD Sbjct: 178 FGLGDEDGGGAGAALQAFDASKLLPRPR---VMATPSELEAHAARLERLRKKAGHALWD 233 >gi|269960617|ref|ZP_06174989.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3] gi|269834694|gb|EEZ88781.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3] Length = 238 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 139/239 (58%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RI+EIGAVE+++ T R F V+L P+ R+ P+A+ Sbjct: 11 RIVVLDTETTGMNLEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYLKPD-REIQPDAIG 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118 +HGITDEFL DKP +S++ EF DF +AHNA FD GF++ E + +N Sbjct: 70 VHGITDEFLVDKPEYSAVHQEFLDFIKGAE--LVAHNAPFDTGFMDYEFEMLNPSIGKTD 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTG-- 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 Q + F N+ E + V R R T +E++ H K ++ + ++IW Sbjct: 186 GQTSLEFNANKKDGEAEGIRRVEG-----RKALKVLRATADEVEAHQKRLELVN-DSIW 238 >gi|325983345|ref|YP_004295747.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212] gi|325532864|gb|ADZ27585.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212] Length = 245 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 113/243 (46%), Gaps = 14/243 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ K RI+EI AVEL + T F +L P R++ AL++HG+ Sbjct: 1 MRQIVLDTETTGLECKLGHRIVEIAAVELCNRQFTGSHFHYYLNPE-RESDEGALQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL+DK F I EF +F ++ L + S+I D Sbjct: 60 TMEFLQDKAKFYEISREFLNFISDAELIIHNAPFDVGFLNHELGLCNLKALDNYCSQITD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +A+ HP RN+L++LC+RY I S R HGALLD+ LL++VY+ M G + Sbjct: 120 TLKLAKELHPGKRNNLDALCERYNIDNSKRKLHGALLDAELLAEVYLAMTRGQESLLIEL 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWDRYI 241 E + + T EE H ++ + +W+ + Sbjct: 180 DYVESVQPSQIDLDNSD--------LRIIAATAEEKARHCGILEEIARASDNKCLWNNFE 231 Query: 242 SSN 244 ++ Sbjct: 232 IAD 234 >gi|90407281|ref|ZP_01215467.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3] gi|90311564|gb|EAS39663.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3] Length = 236 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 133/245 (54%), Gaps = 19/245 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M R++V D ETTG++ RIIEIG VE+++ T R + V+L P+ R+ Sbjct: 1 MNTSKVNRQVVLDTETTGMNKDGTIYLGHRIIEIGCVEVINRRLTGRHYHVYLQPD-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--- 112 PEA+ +HGITDEFL+DKP F+ I +F DF + + HNA FDVGF++ E + Sbjct: 60 DPEAVTVHGITDEFLQDKPHFADIADDFIDFIRGAD--LVIHNAPFDVGFMDQEFRFLNK 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + + + DTL +A++ P RN+L+ LC RYGI HR+ HGALLD+ +L+DVY+ Sbjct: 118 KTQPTEEIATVTDTLVMAKKMFPGKRNNLDILCDRYGINTKHRTLHGALLDAEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G S++N + + +T N R T E H + +Q + Sbjct: 178 LMSGGQSKLNLSDDLDNMDSHTRQPRTSNN-------PLCIIRATAAENKAHIERLQLIK 230 Query: 233 KNAIW 237 N +W Sbjct: 231 DN-LW 234 >gi|332528386|ref|ZP_08404380.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC 19624] gi|332042149|gb|EGI78481.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC 19624] Length = 252 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 113/242 (46%), Gaps = 11/242 (4%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL ++ DRIIE+G VELL+ + + P GR + +AL++HGI Sbjct: 1 MRQIVLDTETTGLSAEGGDRIIELGCVELLNRKLSGNNLHFYFNP-GRDSHEDALRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++EFL+DKP F+ + E + EL I D Sbjct: 60 SNEFLRDKPKFAEVAQEILAYLQGAELIIHNAAFDVGFLNKELELIGKPALHTFVGGITD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ +P RN L++LC R G+ S R+ HGALLD+ LL+DVYI M G + Sbjct: 120 TLAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINMTRGQDALLID- 178 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDRYI 241 E+ L R +++EL H + + K +W + + Sbjct: 179 ----AGDAVEQAGAGFERIDLSRFDLPVLHASEQELAAHGDVLAQIDKACGGKTVWLQRV 234 Query: 242 SS 243 + Sbjct: 235 DA 236 >gi|319787627|ref|YP_004147102.1| DNA polymerase III subunit epsilon [Pseudoxanthomonas suwonensis 11-1] gi|317466139|gb|ADV27871.1| DNA polymerase III, epsilon subunit [Pseudoxanthomonas suwonensis 11-1] Length = 247 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 137/246 (55%), Gaps = 14/246 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIG VELL+ + R F +L P+ A ++ G+ Sbjct: 1 MRQIILDTETTGLEWKKGNRVVEIGCVELLERRPSGRNFHRYLKPDC-DFEAGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122 T EFL DKP+F I EF ++ + I HNA FD+GF++ EL R +D Sbjct: 60 TLEFLADKPAFEEIVDEFLEYIDGAE--LIIHNAAFDLGFLDYELSRCGAHLGRIVDRCS 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLLLARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWDR 239 FG R + +S +R + EEL+ H + ++ L K A+WD+ Sbjct: 178 FGDVEAASRGPVVTTVSFAPVS-GERPR---ISAQPEELEAHARRLERLRKKAGRALWDQ 233 Query: 240 YISSNQ 245 Y + Sbjct: 234 YEPLPE 239 >gi|163801804|ref|ZP_02195701.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4] gi|159174312|gb|EDP59116.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4] Length = 238 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 94/239 (39%), Positives = 138/239 (57%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IV D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ PEA+ Sbjct: 11 RIIVLDTETTGMNLEGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPEAIG 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118 +HGITDEFL DKP +S + EF DF +AHNA FD GF++ E + ++ Sbjct: 70 VHGITDEFLVDKPDYSHVHQEFLDFIKGAE--LVAHNAPFDTGFMDYEFEMLDPAIGKTD 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M Sbjct: 128 DFCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTG-- 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 Q + F N+ E + V R R T +E++ H K ++ + ++IW Sbjct: 186 GQTSLEFNANKKNGEPEGIRRVQG-----RKALKVLRATADEVEAHQKRLELVN-DSIW 238 >gi|52841614|ref|YP_095413.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628725|gb|AAU27466.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 251 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 119/230 (51%), Gaps = 6/230 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTG+ + R+IEIG +EL+D T + F ++L P R+ A ++HGI Sbjct: 19 MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 77 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL+DKP F I +EF F + + NK D RI+D Sbjct: 78 STEFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILD 137 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR KHP RN L++LCKRY I +R HGALLD+ +L+ VY+ M G S Sbjct: 138 TLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSS----L 193 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 T + + K I L KP+ + +EEL +H ++ + K + Sbjct: 194 FTEVESSLSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKS 243 >gi|71281267|ref|YP_268980.1| DNA polymerase III, epsilon subunit [Colwellia psychrerythraea 34H] gi|71147007|gb|AAZ27480.1| DNA polymerase III, epsilon subunit [Colwellia psychrerythraea 34H] Length = 256 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 59/253 (23%), Positives = 102/253 (40%), Gaps = 25/253 (9%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCP-----NGRKNSP 57 + R I+ D ETTG++ + RI+EIG VE+++ T RT+ ++ P + Sbjct: 11 EKDKRLIILDTETTGINPREGHRIVEIGCVEMINRQLTGRTYHAYIKPLDQRGQVFQMEQ 70 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV---------GFINA 108 E + +HG+T+EFL DKP FS + EF DF + Sbjct: 71 EVINIHGLTNEFLADKPIFSQVVHEFIDFIRGAELVIHNSKFDVGFMDHEFSLFNSMGRS 130 Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 + + + + +S P + + L + + R+ HGAL+D+ LL+ Sbjct: 131 QDKVPMTEDICTITDTLKVSKDELGSPKTLDYLARFYRV--DKLVDRTYHGALIDAQLLA 188 Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 VYI+M Q +F + + R+K + +EL H + + Sbjct: 189 YVYIEMTR--KQSSFNLSSGDGTNADAN---AIRRVSSTRNKLKVIAASADELVAHTERV 243 Query: 229 QTLGKN---AIWD 238 +GK +W Sbjct: 244 AVIGKKGGDPLWK 256 >gi|307261758|ref|ZP_07543424.1| hypothetical protein appser12_13170 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868576|gb|EFN00387.1| hypothetical protein appser12_13170 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 248 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 84/241 (34%), Positives = 129/241 (53%), Gaps = 16/241 (6%) Query: 11 VFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ EA+K+HGI Sbjct: 2 VLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVDEEAIKVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122 T+EFL+DKP F+ + EF +F I HNA FDV F++ E + P Sbjct: 61 TNEFLQDKPVFAEVADEFIEFIKGAE--LIIHNAPFDVAFMDQEFSYLGNPPPKTAEMCS 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ M G + Sbjct: 119 VTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLAL- 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 G + + I+ + + +++EE H++ ++ + K N IW Sbjct: 178 LGEEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWM 237 Query: 239 R 239 R Sbjct: 238 R 238 >gi|21230449|ref|NP_636366.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769557|ref|YP_244319.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. campestris str. 8004] gi|188992765|ref|YP_001904775.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. campestris str. B100] gi|21112012|gb|AAM40290.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574889|gb|AAY50299.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv. campestris str. 8004] gi|167734525|emb|CAP52735.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv. campestris] Length = 245 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 134/239 (56%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLRPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 T EFL DKP F+ + EF + + I HNA FD+GF++ EL +D + Sbjct: 60 TLEFLADKPVFAEVVEEFLAYIDGAE--LIIHNAAFDLGFLDNELSLLGDQFGRIIDRAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 FG E + SLL +P +T EL H+ ++ L K A+WD Sbjct: 178 FGAMDAGQHAEGGEGMIAFDPSLL-LPRPRVV-VTPSELQAHEARLERLRKKAGRALWD 234 >gi|90414055|ref|ZP_01222038.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK] gi|90324850|gb|EAS41378.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK] Length = 246 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 133/248 (53%), Gaps = 16/248 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R IV D ETTG++ + IIEIGAVE+++ T +F V++ P+ R Sbjct: 5 MKATNQRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEIINRKLTGNSFHVYIKPD-RTIE 63 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 EA+ +HGITDEFL KP + + EF +F +AHNA FDVGF++ E +++N + Sbjct: 64 VEAIGVHGITDEFLIGKPVYKEVHDEFLEFIKGAE--LVAHNAPFDVGFMDYEFRKLNPN 121 Query: 117 P---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 122 IGKTEDFCKVTDTLAMAKKIFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLL 181 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 M Q + + + I+ R + +E++ H+ + + K Sbjct: 182 MTG--GQTSLALSAEREDRDAGTGSEIKRIAPG-RKLLKVLHASADEIEAHESRLDIISK 238 Query: 234 NA--IWDR 239 +W + Sbjct: 239 KGDVMWRQ 246 >gi|304395367|ref|ZP_07377250.1| DNA polymerase III, epsilon subunit [Pantoea sp. aB] gi|304356661|gb|EFM21025.1| DNA polymerase III, epsilon subunit [Pantoea sp. aB] Length = 243 Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 130/249 (52%), Gaps = 18/249 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T F ++L P+ R Sbjct: 1 MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLV 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI DEFL DKP+FS I EF D+ + HNA FD+GF++ E ++N+ Sbjct: 59 DPEAFGVHGIADEFLADKPAFSDIADEFLDYIRGAE--LVIHNAPFDIGFMDYEFSKLNR 116 Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +I D+L++ARR P RN L++LC RY I + R+ HGALLD+ +L++V++ Sbjct: 117 GIEKTETFCKITDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAEILAEVFL 176 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G +E +E + + ++EE+ H+ + + Sbjct: 177 TMTGGQ---TSLSFLSESESAREAQGESIQRIVRPASALRVVTASEEEVVAHESRLDLVM 233 Query: 233 KN---AIWD 238 K +W Sbjct: 234 KKGGSCLWR 242 >gi|308185776|ref|YP_003929907.1| DNA polymerase III epsilon subunit [Pantoea vagans C9-1] gi|308056286|gb|ADO08458.1| DNA polymerase III epsilon subunit [Pantoea vagans C9-1] Length = 243 Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 134/249 (53%), Gaps = 18/249 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T F ++L P+ R Sbjct: 1 MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLV 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI DEFL DKP+FS I EF D+ + HNA FD+GF++ E ++N+ Sbjct: 59 DPEAFGVHGIADEFLADKPAFSEIADEFLDYIRGAE--LVIHNAPFDIGFMDYEFSKLNR 116 Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +I D+L++ARR P RN L++LC RY I + R+ HGALLD+ +L++V++ Sbjct: 117 GIEKTETFCKITDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAEILAEVFL 176 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + ++F ++ R + E + ++EE+ H+ + + Sbjct: 177 TMTGGQTSLSFLSESESARQAQGESIQRI---VRPASALRVVTASEEEVVAHESRLDLVM 233 Query: 233 KN---AIWD 238 K +W Sbjct: 234 KKGGSCLWR 242 >gi|332525346|ref|ZP_08401511.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2] gi|332108620|gb|EGJ09844.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2] Length = 234 Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 114/238 (47%), Gaps = 12/238 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL + DR++E+G +E+L+ + RT +L P R ++PEA+K+HG+ Sbjct: 1 MRQIFLDTETTGLSAVDGDRLVEVGCIEMLNRRLSGRTLHHYLNPE-RSSNPEAVKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDEFL DKP F+++ EF +F + + I D Sbjct: 60 TDEFLADKPLFAAVADEFIEFVRDAELIIHNAAFDVGFLDAELTRLGKPRLVELGCTITD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L +AR+ P N L++LCKR + S+R+ HGALLD+ LL++VYI+M G + Sbjct: 120 SLVMARQLFPGKANSLDALCKRLEVDNSNRALHGALLDAGLLAEVYIRMTRGQDSLVIDD 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDR 239 + + + + EE H+ + L K + IW + Sbjct: 180 AQEGGTALEVAAIDLSQFT------LPVLVASDEEAAAHEAVLAELDKASNGRTIWRQ 231 >gi|91788057|ref|YP_549009.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666] gi|91697282|gb|ABE44111.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666] Length = 234 Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 83/239 (34%), Positives = 124/239 (51%), Gaps = 16/239 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL ++ DRIIEIG VEL+ T +L P R + +ALK+HGI Sbjct: 1 MRQIVLDTETTGLSAENGDRIIEIGCVELVGRKLTGNNRHFYLNPE-RDSHEDALKVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 ++EFLKDKP F+++ E ++ HNA FDV F+N EL+ I +DP+ ++ Sbjct: 60 SNEFLKDKPKFAAVADELLEYLQGAEII--IHNAPFDVSFLNKELELIGRDPIRHCVAKV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L +A+ P RN L++LC R + S R+ HGALLD+ LL+DVYI + G + + Sbjct: 118 TDSLMMAKELFPGKRNSLDALCDRLDVDNSGRTLHGALLDAELLADVYINLTRGQNSLMM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 + P + L +E+ H+ + + K +W Sbjct: 178 D------VGGPAQDGDTPPLIDLSAFALPLLLANDQEIAAHEVLLADIDKASKGKTVWR 230 >gi|319638369|ref|ZP_07993131.1| DNA polymerase subunit III [Neisseria mucosa C102] gi|317400118|gb|EFV80777.1| DNA polymerase subunit III [Neisseria mucosa C102] Length = 245 Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 114/243 (46%), Gaps = 13/243 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64 R+I+ D ETTGL + DR++E +E+++ T+ +++ P R E + Sbjct: 4 RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGLT 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 I K+ P F+ + + DF I HNAKFDVGF+N E +R+ ++ + Sbjct: 63 IEVLEAKNAPPFAQVGKQIADFIRGAE--LIIHNAKFDVGFLNMEFRRMGLPSIEELGCK 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQFDLM 180 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 G E S + + +EL H+K + LG+ +W + + Sbjct: 181 GGEAEEEGEVKPTIIAETKRTS-----QLKVIKADADELAAHEKYLDDLGEACVWRKAET 235 Query: 243 SNQ 245 ++ Sbjct: 236 PDE 238 >gi|288956846|ref|YP_003447187.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510] gi|288909154|dbj|BAI70643.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510] Length = 227 Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 131/232 (56%), Gaps = 9/232 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + R++EIG +EL+++ T F V+L P R PEA +HG+ Sbjct: 1 MREIVLDTETTGFKPEEGHRLVEIGCIELVNHLATGERFHVYLNPE-RDMPPEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++EFL DKP F+ + ++F F + + + HNA FD+ F+N EL+ + R ID Sbjct: 60 SEEFLADKPLFNDVAADFVAFIGD--SPLVIHNAAFDMHFLNWELKIAGYPVMPKDRAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR+K P S L++LCKR+G+ S+R+ HGALLD+ LL++VY++++ G Q F Sbjct: 118 TLLMARQKFPGSPATLDALCKRFGVDNSNRTLHGALLDAQLLAEVYLELLG-GRQTGLSF 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + P + +++EE H + ++ + KN +W Sbjct: 177 A---GGPVSKGGVAGPVRVDRPFREARVFAVSEEEAAAHAEMLKKI-KNPLW 224 >gi|261400727|ref|ZP_05986852.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC 23970] gi|269209492|gb|EEZ75947.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC 23970] Length = 244 Score = 128 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 103/241 (42%), Gaps = 9/241 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R E + Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAAKVHGLT 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I K+ P F+ + + DF + + + Sbjct: 63 IEVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M F Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQ----FD 178 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 +++ + V + + + K + + EL H+K + LG++ IW + + Sbjct: 179 LMGEDEKEEPAAQPAVS-VEMKRSAKLKVVKADETELAAHEKYLDGLGESCIWRKEAVPS 237 Query: 245 Q 245 + Sbjct: 238 E 238 >gi|307257347|ref|ZP_07539117.1| hypothetical protein appser10_13450 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864197|gb|EFM96110.1| hypothetical protein appser10_13450 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 248 Score = 128 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 84/241 (34%), Positives = 129/241 (53%), Gaps = 16/241 (6%) Query: 11 VFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ EA+K+HGI Sbjct: 2 VLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVDEEAIKVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122 T+EFL+DKP F+ + EF +F I HNA FDV F++ E + P Sbjct: 61 TNEFLQDKPVFAEVADEFIEFIKGAE--LIIHNAPFDVAFMDQEFSYLENPPPKTAEMCS 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ M G + Sbjct: 119 VTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLAL- 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 G + + I+ + + +++EE H++ ++ + K N IW Sbjct: 178 LGEEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWM 237 Query: 239 R 239 R Sbjct: 238 R 238 >gi|254452968|ref|ZP_05066405.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus 238] gi|198267374|gb|EDY91644.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus 238] Length = 242 Score = 128 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 20/247 (8%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGA+EL ++ T RT+ ++ P R A +HGI Sbjct: 1 MREIVLDTETTGFEPSEGDRIVEIGAIELHNHMPTGRTYHQYINPK-RTMPAGAFGIHGI 59 Query: 66 TDEFLKDK-------------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L+ P F+ I F DF + ++ + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQTPTAGQVLLRDKPVFAEIAQAFVDFIGD--SKLVIHNAAFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +N+ L + +DTL IAR+K P S L++LC+R+GI S+R+ HGALLDS +L++VY+ Sbjct: 118 VNRPLLPMGQSLDTLGIARKKFPGSPASLDALCRRFGIDNSNRTLHGALLDSEILAEVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ G + + R PL +I E D H I+ LG Sbjct: 178 ELIGGRQP---DLVMGDQTGSNAKNGGGAEWRPQLRTTPLAPKIKAAEADAHAAFIKLLG 234 Query: 233 KNAIWDR 239 NA+W++ Sbjct: 235 DNALWNK 241 >gi|114328806|ref|YP_745963.1| DNA polymerase III subunit epsilon [Granulibacter bethesdensis CGDNIH1] gi|114316980|gb|ABI63040.1| DNA polymerase III, epsilon chain [Granulibacter bethesdensis CGDNIH1] Length = 225 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 87/232 (37%), Positives = 121/232 (52%), Gaps = 12/232 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++FD ETTG D DRI+EI A+EL + T TF + P R EA ++HG T Sbjct: 3 RSVLFDTETTGFDPLTGDRILEIAALELFNDLPTGNTFHTLVDP-CRDVPEEATRVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E L+ KP F+ I + FF IAHNA FD F+NAE R+ K LDP+R+IDT Sbjct: 62 AEMLRGKPLFADIVEDLLAFF--GRDPLIAHNAPFDFNFLNAEFARLGKPKLDPARMIDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +A+ + P N L++LC+R+ I +S R+ H ALLD LL++VYI++ G Q G Sbjct: 120 LVMAKARFPGMPNSLDALCRRFSIDLSQRTTHNALLDCKLLAEVYIELTG-GRQRGLGLT 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 E E + + P + L H+ I L K+ +W Sbjct: 179 EAERAAAVAEYEHSAS------RVPRPIMPDEATLAAHEAFIDRL-KDPVWR 223 >gi|330994285|ref|ZP_08318213.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1] gi|329758752|gb|EGG75268.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1] Length = 226 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 85/234 (36%), Positives = 126/234 (53%), Gaps = 14/234 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I+FD ETTGLD K DR+IEI A+EL+ T R F V + P R EA ++HG T Sbjct: 3 RTILFDTETTGLDPLKGDRVIEIAALELVGDLPTGRNFHVLIDPE-RDVPEEASRVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ KP F+ + S F +F + IAHNA+FD GF+NAEL R + LD R++DT Sbjct: 62 RADLEGKPKFAEVASGFLEFVGD--DPLIAHNARFDFGFLNAELARAGQPVLDMGRMVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +AR + P N L++LC+R+ I +S R+ H ALLD LL+ VY+++ G Q Sbjct: 120 LDMARERFPGMPNSLDALCRRFSIDLSERTTHNALLDCRLLAAVYLELTG-GRQRGLSLA 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE--ELDEHDKTIQTLGKNAIWD 238 + + ++ R+T + E+ H+ + L + +W+ Sbjct: 179 VEDGGG------GIATYDYVRPAGHAVVRVTPDAAEIAAHETFVARLS-SPLWN 225 >gi|152980051|ref|YP_001352902.1| DNA polymerase III epsilon subunit [Janthinobacterium sp. Marseille] gi|151280128|gb|ABR88538.1| DNA polymerase III epsilon subunit [Janthinobacterium sp. Marseille] Length = 235 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 116/241 (48%), Gaps = 12/241 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + DRIIEIG VEL++ T F ++ P R + AL +HG+ Sbjct: 1 MRQIVLDTETTGLNPRSGDRIIEIGCVELVNRRLTGNNFHHYINPE-RDSEEGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F+ I +EF D+ + + + +ID Sbjct: 60 TTEFLSDKPKFAEIAAEFRDYISGADVIIHNAPFDIGFLDAELKRVNTPSFKEHVGEVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL A+ HP RN L++LC RYGI+ +HR+ HGALLD+ LL++VY+ M G + ++ Sbjct: 120 TLVQAKEMHPGKRNSLDALCDRYGISNAHRALHGALLDAELLAEVYLAMTRGQNSLSMDL 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRYI 241 ++ + + V + +++L K ++W + Sbjct: 180 GASDVGSDGQVLEVVAIAPVQLLAATAEELAAH------AAMVESLDKQVKGQSVWRKLE 233 Query: 242 S 242 + Sbjct: 234 T 234 >gi|326317571|ref|YP_004235243.1| DNA polymerase III subunit epsilon [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374407|gb|ADX46676.1| DNA polymerase III, epsilon subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 243 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 114/243 (46%), Gaps = 11/243 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++ DRIIE+G VELL+ T ++ P R + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSAEGGDRIIELGCVELLNRKLTGNNLHLYFNPE-RDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +EFLKDKP F+ + E ++ EL + DT Sbjct: 62 NEFLKDKPKFAEVVDEILEYLQGAEIIIHNAAFDVGFLNKELELTGRPAFTSYVESVTDT 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +A+ +P RN L++LC R G+ S R+ HGALLD+ LL+DVYI + G + Sbjct: 122 LVMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLIADD 181 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRYIS 242 E V L +++EL HD+ + + K IW + S Sbjct: 182 AQEGDESAVRLAPVD----LSAFTLPVLLASEQELAAHDEVLAQIDKASGGKTIW-KISS 236 Query: 243 SNQ 245 +Q Sbjct: 237 DSQ 239 >gi|261856413|ref|YP_003263696.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus c2] gi|261836882|gb|ACX96649.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus c2] Length = 237 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 125/230 (54%), Gaps = 9/230 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG+ + R++EIGAVE+++ T +TF +L P R A +HG++ Sbjct: 4 RQIVLDTETTGMPAADGHRLVEIGAVEMIERRVTGKTFHCYLNPE-RLVDEGAFNVHGLS 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR---I 123 D FL DKP F+ + EF F I HNA+FDVGF++AEL R+ + Sbjct: 63 DAFLADKPKFADVVDEFLAFIAGAE--LIIHNAEFDVGFLDAELARLANGGRLADVAGSV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L+IAR+KHP RN L++LC+RY I S R+ HGALLDS +L+DVY+ + G + F Sbjct: 121 TDSLAIARKKHPGQRNSLDALCRRYSIDNSARTLHGALLDSEILADVYLALTGGQKTLGF 180 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + + K+ + R +EE H + TLGK Sbjct: 181 DSEHGQGDEHKQAASIIR--LPADRPPLRVITANEEERAAHAAWLVTLGK 228 >gi|121605184|ref|YP_982513.1| DNA polymerase III subunit epsilon [Polaromonas naphthalenivorans CJ2] gi|120594153|gb|ABM37592.1| DNA polymerase III, epsilon subunit [Polaromonas naphthalenivorans CJ2] Length = 240 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 90/239 (37%), Positives = 130/239 (54%), Gaps = 16/239 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL ++ DRIIEIG VEL+ T +L P GR + +ALK+HGI Sbjct: 1 MRQIVLDTETTGLSAENGDRIIEIGCVELVRRKLTGNNKHFYLNP-GRNSHEDALKVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 ++EFLKDKP FS++ E D+ HNA FDV F+N EL+ I ++PL ++ Sbjct: 60 SNEFLKDKPKFSAVVDELLDYLQGAEII--IHNAPFDVSFLNKELEIIGREPLMHCVAKV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L +A+ P RN LN+LC R + S R+ HGALLD+ LL+DVYI + G + + Sbjct: 118 TDSLMMAKEMFPGKRNSLNALCDRLEVDNSGRTLHGALLDAELLADVYINLTRGQNSLMM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 + E + + +++E+D H+K + TL K +W Sbjct: 178 DIGSPVQTGESEPLVDLRLF------ELPVLSASEQEMDAHEKVLLTLDKASRGKTVWR 230 >gi|302878569|ref|YP_003847133.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans ES-2] gi|302581358|gb|ADL55369.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans ES-2] Length = 233 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 86/242 (35%), Positives = 127/242 (52%), Gaps = 15/242 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MRKIV D ETTGLD K RIIEI A+ L + R F +L P R+ +A ++HG Sbjct: 1 MRKIVLDTETTGLDPKKGHRIIEIAAIALEGRKVSKRHFHHYLDPE-REVDEDAARVHGF 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + LK + F+ I + F +F + +AHNA FD+ FIN EL+ + PL + ++D Sbjct: 60 TWDMLKGRAKFADIATSFLEFVDGAE--LMAHNAPFDMSFINNELRLLGLPPL-ENPVVD 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR HP +N L++LC RY I +HR+ HGALLD+ LL++VY M G + Sbjct: 117 TLKMAREMHPGKKNGLDALCSRYEIDNTHRTLHGALLDTELLAEVYFAMTRGQESL---L 173 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRYI 241 +E +E + S R + +EL H + + + K +W + Sbjct: 174 GEDEPPAAREIAVLSTDAS---RPTVRVLLPSPDELAVHAQQLLDIDKASKGACLWTKLE 230 Query: 242 SS 243 S+ Sbjct: 231 SA 232 >gi|120611120|ref|YP_970798.1| DNA polymerase III subunit epsilon [Acidovorax citrulli AAC00-1] gi|120589584|gb|ABM33024.1| DNA polymerase III, epsilon subunit [Acidovorax citrulli AAC00-1] Length = 243 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 110/236 (46%), Gaps = 10/236 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++ DRIIE+G VELL+ T ++ P R + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSAEGGDRIIELGCVELLNRKLTGNNLHLYFNPE-RDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +EFLKDKP F+ + E ++ EL + DT Sbjct: 62 NEFLKDKPKFAEVVDEILEYLQGAEIIIHNAAFDVGFLNKELELTGRPAFTSYVESVTDT 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +A+ +P RN L++LC R G+ S R+ HGALLD+ LL+DVYI + G + Sbjct: 122 LVMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLIADD 181 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 E V L +++EL HD+ + + K IW Sbjct: 182 AQEGDETAVRLAPVD----LSAFTLPVLLASEQELAAHDEVLAQIDKASGGKTIWK 233 >gi|78046646|ref|YP_362821.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925275|ref|ZP_08186679.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118] gi|78035076|emb|CAJ22721.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544321|gb|EGD15700.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118] Length = 244 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 131/239 (54%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 T EFL DKP F + EF + + I HNA FD+GF++ EL ++ + Sbjct: 60 TLEFLADKPLFGEVVDEFLAYIDGAE--LIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + +LL +P +T EL H+ + L K A+WD Sbjct: 178 FASADAGQQTDAASGVIAFDPALL-LPRPR-IAVTASELQAHEARLAQLRKKAGRALWD 234 >gi|149912883|ref|ZP_01901417.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b] gi|149813289|gb|EDM73115.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b] Length = 244 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 139/247 (56%), Gaps = 19/247 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGA+EL ++ T RTF ++ P GR EA ++HGI Sbjct: 1 MREIVLDTETTGFDPEQGDRIVEIGALELYNHMPTGRTFHHYINP-GRGMPQEAFEVHGI 59 Query: 66 TDE-------------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L+DKP F + + F +F NA+ + HNA FD+ F+NAEL Sbjct: 60 GPDLLDAPRPPRPGEITLRDKPPFDHVANAFIEFV--GNAKLVIHNAAFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + L + IDTL+IAR+K P S L++LC+R+ I + R+ HGALLDS +L++VY+ Sbjct: 118 LKLPLLPWEQAIDTLAIARQKFPGSPASLDALCRRFAIDNTARTLHGALLDSEILAEVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ G Q +F + + + R +PL RIT+ E H I+T+G Sbjct: 178 ELIG-GRQPDFALSAHPVAQSGSAETDIG-WRPKPRPQPLPPRITETEAAAHAAFIETMG 235 Query: 233 KNAIWDR 239 ++W + Sbjct: 236 DGSLWKK 242 >gi|28199104|ref|NP_779418.1| DNA polymerase III subunit epsilon [Xylella fastidiosa Temecula1] gi|71901532|ref|ZP_00683617.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|182681831|ref|YP_001829991.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M23] gi|28057202|gb|AAO29067.1| DNA polymerase III epsilon chain [Xylella fastidiosa Temecula1] gi|71728719|gb|EAO30865.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|182631941|gb|ACB92717.1| DNA polymerase III, epsilon subunit [Xylella fastidiosa M23] gi|307578082|gb|ADN62051.1| DNA polymerase III subunit epsilon [Xylella fastidiosa subsp. fastidiosa GB514] Length = 239 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 95/242 (39%), Positives = 133/242 (54%), Gaps = 13/242 (5%) Query: 4 KNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +NK R+IV D ETTGL+ SK +RI+EIGAVELLD + F +L P+ S A ++ Sbjct: 2 RNKKRQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPDVSFES-GAQEV 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLD 119 G+T EFL DKP FS I +F + N I HNA FD+GF++ EL R D Sbjct: 61 TGLTMEFLADKPEFSMIADKFLAYINGAE--LIIHNAAFDLGFLDYELSRLGSQYGKITD 118 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++DTL +AR ++P RN L++LCKR G+ +HR HGALLD+ +L+DVYI + G Sbjct: 119 RASVLDTLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQE 178 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---I 236 +I F + LL R ++ EL+ H+ + L K A + Sbjct: 179 EIGFALPESSRGGVDAASVAFMPDVLLTRPC---VVASQSELEAHEARLAKLRKIAGHVL 235 Query: 237 WD 238 WD Sbjct: 236 WD 237 >gi|307250533|ref|ZP_07532477.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857426|gb|EFM89538.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 248 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 84/241 (34%), Positives = 129/241 (53%), Gaps = 16/241 (6%) Query: 11 VFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ EA+K+HGI Sbjct: 2 VLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVEEEAIKVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122 T+EFL+DKP F+ + EF +F I HNA FDV F++ E + P Sbjct: 61 TNEFLQDKPVFAEVADEFIEFIKGAE--LIIHNAPFDVAFMDQEFSYLENPPPKTAEMCS 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ M G + Sbjct: 119 VTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLAL- 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 G + + I+ + + +++EE H++ ++ + K N IW Sbjct: 178 LGEEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWM 237 Query: 239 R 239 R Sbjct: 238 R 238 >gi|330813374|ref|YP_004357613.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327486469|gb|AEA80874.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 225 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 129/223 (57%), Gaps = 8/223 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M +I+ D ETTGL D+IIEI +EL + T F VF+ PN S A + HGI+ Sbjct: 1 MLEIILDTETTGLSFNTDKIIEIACIELENQIPTKNKFHVFINPN-MDISDGAYQTHGIS 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +FL+DKP F I EF +F + ++ + HNA FD+ F+N ELQ ++ +PL R++DT Sbjct: 60 RDFLRDKPVFKDIAKEFLNFIKD--SKLVIHNADFDLAFLNKELQELDLEPLSKDRVVDT 117 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +AR+K P S+ L++LCKR+ I S R KH AL+D +LL++VYI+++ + + Sbjct: 118 LFLARQKFPGSQASLDALCKRFKINTSEREKHSALVDCNLLTEVYIELLEK-KEPLLDLQ 176 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 ++ + N + K + IT+EE + H K ++ Sbjct: 177 PSQADINDLDSSKTINTNRKK----IIVPITEEERNLHRKFLK 215 >gi|15838748|ref|NP_299436.1| DNA polymerase III subunit epsilon [Xylella fastidiosa 9a5c] gi|9107294|gb|AAF84956.1|AE004030_2 DNA polymerase III, epsilon chain [Xylella fastidiosa 9a5c] Length = 239 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 96/242 (39%), Positives = 134/242 (55%), Gaps = 13/242 (5%) Query: 4 KNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +NK R+IV D ETTGL+ SK +RI+EIGAVELLD + F +L P+ S A ++ Sbjct: 2 RNKKRQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPDVSFES-GAQEV 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLD 119 G+T EFL DKP FS I EF + N I HNA FD+GF++ EL R D Sbjct: 61 TGLTMEFLADKPEFSMIADEFLAYINGAE--LIIHNAAFDLGFLDYELSRLGSQYGKITD 118 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++DTL +AR ++P RN L++LCKR G+ +HR HGALLD+ +L+DVYI + G Sbjct: 119 RASVLDTLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQE 178 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---I 236 +I F + LL R + ++ EL+ H+ + L K A + Sbjct: 179 EIGFALPESSRGGVDAASVAFMPDVLLTRPCVVV---SQSELEAHEARLAKLRKIAGHVL 235 Query: 237 WD 238 WD Sbjct: 236 WD 237 >gi|312115401|ref|YP_004012997.1| DNA polymerase III subunit epsilon [Rhodomicrobium vannielii ATCC 17100] gi|311220530|gb|ADP71898.1| DNA polymerase III, epsilon subunit [Rhodomicrobium vannielii ATCC 17100] Length = 241 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 97/239 (40%), Positives = 130/239 (54%), Gaps = 10/239 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTGLD K RIIE+ VEL +Y T + + P R EA +HG+ Sbjct: 1 MRELVLDTETTGLDPKSGHRIIELACVELHNYIPTGVFWHWYFNPE-RSVPREATAIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRII 124 TD FL DKP F +I + HNA FDVGF+N + + P+ R+ Sbjct: 60 TDGFLADKPLFGAIAPDIVKVLEGARLI--IHNASFDVGFLNFEFQKLGYQQPISMERVT 117 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++ARRKHP S N+L++LC+RYGI S R+KHGALLDS LL+DVY++++ Q Sbjct: 118 DTLALARRKHPGSPNNLDALCRRYGIDNSTRTKHGALLDSELLADVYLRLIG-AEQAGLD 176 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 + + R KPL +R+T EE H + TLG AIW RY + Sbjct: 177 LGARSAEVTVAGQAAAVQV----RLKPLPSRLTAEEAAAHAAFVATLGDKAIWKRYGDA 231 >gi|325914917|ref|ZP_08177249.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC 35937] gi|325538810|gb|EGD10474.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC 35937] Length = 244 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 87/239 (36%), Positives = 130/239 (54%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 T EFL DKP F + EF + + I HNA FD+GF++ EL +D + Sbjct: 60 TLEFLADKPLFGDVVEEFLAYIDGAE--LIIHNAAFDLGFLDNELSLLGDGYGRIIDRAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ +HR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + E + L +P +T E H+ + L K A+WD Sbjct: 178 FA-SADAGQNSNESSGMIAFDPALLLPRPRVV-VTASESQAHEARLAQLRKKAGRALWD 234 >gi|194098390|ref|YP_002001448.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae NCCP11945] gi|239998794|ref|ZP_04718718.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae 35/02] gi|240112723|ref|ZP_04727213.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae MS11] gi|240115471|ref|ZP_04729533.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae PID18] gi|240123321|ref|ZP_04736277.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae PID332] gi|240128023|ref|ZP_04740684.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae SK-93-1035] gi|254493581|ref|ZP_05106752.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291] gi|260440719|ref|ZP_05794535.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae DGI2] gi|268594640|ref|ZP_06128807.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268598788|ref|ZP_06132955.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11] gi|268601147|ref|ZP_06135314.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18] gi|268681945|ref|ZP_06148807.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332] gi|268686413|ref|ZP_06153275.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035] gi|291044028|ref|ZP_06569744.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2] gi|293399220|ref|ZP_06643385.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62] gi|193933680|gb|ACF29504.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae NCCP11945] gi|226512621|gb|EEH61966.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291] gi|268548029|gb|EEZ43447.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268582919|gb|EEZ47595.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11] gi|268585278|gb|EEZ49954.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18] gi|268622229|gb|EEZ54629.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332] gi|268626697|gb|EEZ59097.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035] gi|291012491|gb|EFE04480.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2] gi|291610634|gb|EFF39744.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62] gi|317164085|gb|ADV07626.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae TCDC-NG08107] Length = 244 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 9/241 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R E + Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I K+ P F+ + + DF + + + Sbjct: 63 IQVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M F Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQ----FD 178 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 + + K V + + K + + EL H++ + LG+ IW + + Sbjct: 179 LMGETEE-EEPTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIWRKEAVPS 237 Query: 245 Q 245 + Sbjct: 238 E 238 >gi|308049181|ref|YP_003912747.1| DNA polymerase III, epsilon subunit [Ferrimonas balearica DSM 9799] gi|307631371|gb|ADN75673.1| DNA polymerase III, epsilon subunit [Ferrimonas balearica DSM 9799] Length = 240 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 121/250 (48%), Gaps = 20/250 (8%) Query: 1 MIRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 M + +R+IVFD ETTG++ ++IEIG VEL++ T RT+ V++ P+ R Sbjct: 1 MTQAADLRQIVFDTETTGMNQGAGPHYLGHKLIEIGCVELINRKPTGRTYHVYIQPD-RP 59 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 EA+++HGITDEFL KP F I EF++F N E+ Sbjct: 60 VDEEAIQVHGITDEFLVGKPRFGEIAEEFFEFIRGAELIAHNANFDIGFIDYEFEMLGRF 119 Query: 115 KDPLDPSRIIDT----LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 D ++DT R +L++LC+ YGI SHR+ HGALLD+ +L+DV Sbjct: 120 GKLEDHCSLVDTLQLAREKKNRGEIQGNLNLDALCRFYGIDNSHRTLHGALLDAEILADV 179 Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 ++ M G ++NFG + R + T +ELD H K ++ Sbjct: 180 FLYMTGGQVKMNFG--------SGDGDAGGIIRLPEDRRRTKVVLATADELDNHTKRME- 230 Query: 231 LGKNAIWDRY 240 L +AIW R+ Sbjct: 231 LVSDAIWLRH 240 >gi|222110838|ref|YP_002553102.1| DNA polymerase iii subunit epsilon [Acidovorax ebreus TPSY] gi|221730282|gb|ACM33102.1| DNA polymerase III, epsilon subunit [Acidovorax ebreus TPSY] Length = 237 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 78/236 (33%), Positives = 115/236 (48%), Gaps = 11/236 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++ DRIIE+G VEL++ T ++L P R + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSAEGGDRIIELGCVELVNRKLTGNNLHLYLNPE-RDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +EFL+DKP F+ + + + EL + +IDT Sbjct: 62 NEFLRDKPKFAERVQDILQYLQGAELIIHNASFDVGFLDKELELVGLAPLSAHVGGVIDT 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+ P RN L+SLC R G+ S R+ HGALLD+ LL+DVYI M G + Sbjct: 122 LAMAKEMFPGKRNSLDSLCDRLGVDNSSRTLHGALLDAELLADVYINMTRGQDALLIM-- 179 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWD 238 D T L R + +EL EH++ + + K++ IW Sbjct: 180 ---DEATAGAGGTTVAAVDLSRIALTVLTASAQELAEHEEVLVQIDKSSGGKTIWR 232 >gi|121594487|ref|YP_986383.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42] gi|120606567|gb|ABM42307.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42] Length = 237 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 78/236 (33%), Positives = 115/236 (48%), Gaps = 11/236 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++ DRIIE+G VEL++ T ++L P R + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSAEGGDRIIELGCVELVNRKLTGNNLHLYLNPE-RDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +EFL+DKP F+ + + + EL + +IDT Sbjct: 62 NEFLRDKPKFAERVQDILQYLQGAELIIHNASFDVGFLDKELELVGLAPLSAHVGGVIDT 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+ P RN L+SLC R G+ S R+ HGALLD+ LL+DVYI M G + Sbjct: 122 LAMAKEMFPGKRNSLDSLCDRLGVDNSSRTLHGALLDAELLADVYINMTRGQDALLIM-- 179 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWD 238 D T L R + +EL EH++ + + K++ IW Sbjct: 180 ---DEATAGAGGTTVAAVDLSRIALTVLTASAQELAEHEEVLVQIDKSSSGKTIWR 232 >gi|59801359|ref|YP_208071.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae FA 1090] gi|240080918|ref|ZP_04725461.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae FA19] gi|268597034|ref|ZP_06131201.1| DNA polymerase III [Neisseria gonorrhoeae FA19] gi|59718254|gb|AAW89659.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae FA 1090] gi|268550822|gb|EEZ45841.1| DNA polymerase III [Neisseria gonorrhoeae FA19] Length = 244 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 9/241 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R E + Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I K+ P F+ + + DF + + + Sbjct: 63 IQVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCTVT 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M F Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQ----FD 178 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 + + K V + + K + + EL H++ + LG+ IW + + Sbjct: 179 LMGETEE-EEPTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIWRKEAVPS 237 Query: 245 Q 245 + Sbjct: 238 E 238 >gi|260221145|emb|CBA29417.1| DNA polymerase III subunit epsilon [Curvibacter putative symbiont of Hydra magnipapillata] Length = 236 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 110/240 (45%), Gaps = 15/240 (6%) Query: 7 MRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 MR+IV D ETTG + + DR++EIG VEL++ T +L P GR + AL++ Sbjct: 1 MRQIVLDTETTGFYANHPDNPDRMVEIGCVELVNRKLTGNNLHFYLNP-GRDSDEGALRV 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HG+T +FL DKP F I + D+ + + Sbjct: 60 HGLTTQFLSDKPRFEEIAQQLVDYVGGAEIIIHNAPFDLSFLDMELGRTGRKPFKTCVAG 119 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +A+ P RN L++LC R + S R+ HGALLD+ LL+DVYI M G + Sbjct: 120 VLDTLVMAKEMFPGKRNSLDALCDRLEVDNSGRTLHGALLDAELLADVYINMTRGQDALI 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWD 238 ++ E+ + +I + +E+ H+ + L K++ +W Sbjct: 180 MESSAPQEAGIVVEQLDLRSI------QLPVLEANAQEMAAHEDVLSQLDKSSGGKTVWK 233 >gi|71276291|ref|ZP_00652569.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Dixon] gi|71898480|ref|ZP_00680652.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|170730488|ref|YP_001775921.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M12] gi|71162899|gb|EAO12623.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Dixon] gi|71731793|gb|EAO33852.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|167965281|gb|ACA12291.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 239 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 96/242 (39%), Positives = 134/242 (55%), Gaps = 13/242 (5%) Query: 4 KNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +NK R+IV D ETTGL+ SK +RI+EIGAVELLD + F +L P+ S A ++ Sbjct: 2 RNKKRQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPDVSFES-GAQEV 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLD 119 G+T EFL DKP FS I EF + N I HNA FD+GF++ EL R D Sbjct: 61 TGLTMEFLADKPEFSMIADEFLAYINGAE--LIIHNAAFDLGFLDYELSRLGSQYGKITD 118 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++DTL +AR ++P RN L++LCKR G+ +HR HGALLD+ +L+DVYI + G Sbjct: 119 RASVLDTLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTCGQE 178 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---I 236 +I F + LL R + ++ EL+ H+ + L K A + Sbjct: 179 EIGFALPESSCGGVDAASAAFMPDVLLTRPCVVV---SQSELEAHEARLAKLRKIAGHVL 235 Query: 237 WD 238 WD Sbjct: 236 WD 237 >gi|221066578|ref|ZP_03542683.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1] gi|220711601|gb|EED66969.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1] Length = 243 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 117/242 (48%), Gaps = 9/242 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL + DR+IE+G VEL++ T ++ GR + P+AL++HGIT Sbjct: 3 RQIVLDTETTGLSAIDGDRLIELGCVELVNRKLTGNNLHLYFN-AGRDSHPDALRVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 EFLKDKP F E W++ +L + +IDT Sbjct: 62 TEFLKDKPRFEEKIDEIWEYLQGAELIIHNAPFDLGFLNNELKLAKRPPLKQCVGGVIDT 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +A+ +P RN L+SLC R G+ S+R+ HGALLD+ LL+DVYI + G + + Sbjct: 122 LVMAKEMYPGKRNSLDSLCDRLGVDNSNRTLHGALLDAELLADVYINLTRGQDALLMSEE 181 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDRYIS 242 + ++S + R ++E HD ++ + K++ W + + Sbjct: 182 PADAPAAGTMIVASVDLSSF---RLPVLRANEQEQAAHDDVLKQMDKSSGGKTAWRNFEN 238 Query: 243 SN 244 + Sbjct: 239 VS 240 >gi|319762901|ref|YP_004126838.1| DNA polymerase iii, epsilon subunit [Alicycliphilus denitrificans BC] gi|330824980|ref|YP_004388283.1| DNA polymerase III subunit epsilon [Alicycliphilus denitrificans K601] gi|317117462|gb|ADU99950.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans BC] gi|329310352|gb|AEB84767.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans K601] Length = 242 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 115/236 (48%), Gaps = 11/236 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++ DRIIE+G VELL T ++L P R + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSAENGDRIIELGCVELLSRKLTGNNLHLYLNPE-RDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +EFL+DKP F+ + + ++ + EL + +IDT Sbjct: 62 NEFLRDKPKFAEVVHDILEYLRGAELIIHNASFDVGFLDKELELAGLPPLAAHVDGVIDT 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+ P RN L++LC R + S R+ HGALLD+ LL+DVYI M G + + Sbjct: 122 LAMAKEMFPGKRNSLDALCDRLEVDNSGRTLHGALLDAELLADVYINMTRGQDALLIMDE 181 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWD 238 T + L R + +EL EH+ + + K++ IW Sbjct: 182 TANGEGGVKVAAVD-----LSRLVLPVLLASDQELAEHEDLLAQIDKSSAGKTIWR 232 >gi|289207686|ref|YP_003459752.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sp. K90mix] gi|288943317|gb|ADC71016.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. K90mix] Length = 238 Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 86/242 (35%), Positives = 126/242 (52%), Gaps = 18/242 (7%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + R+IEIG +EL + T R +L P+ R+ A+++HGI Sbjct: 1 MRQIVLDTETTGLEPSEGHRVIEIGCLELDNRRPTGRKLHEYLQPD-REIDAGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDP 120 T+EFL DKP F+ + EF +F I HNA FDVGFIN EL+ + ++ Sbjct: 60 TNEFLADKPRFADVVGEFIEFVRGAE--LIIHNAPFDVGFINHELRLLGEAAPVTELVEV 117 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++D+L +ARR HP +RN L++LCKRY I S R+ HGALLD+ LL+DVY+ M G Sbjct: 118 CTVLDSLVMARRMHPGTRNSLDALCKRYEIDASGRTLHGALLDAELLADVYLAMTGGQVA 177 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AI 236 + + + + +E H+ ++TL + Sbjct: 178 LGLDAGGDAGAEAGAPARAQRSGK-----PLPVIEPDADEQAAHEALLRTLDEAAGGVCR 232 Query: 237 WD 238 W Sbjct: 233 WR 234 >gi|325134669|gb|EGC57309.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M13399] Length = 244 Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 102/248 (41%), Gaps = 13/248 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE- 58 MI+ R+I+ D ETTGL + DR++E +E+++ T++ +++ P R E Sbjct: 1 MIQ----RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEA 55 Query: 59 -ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + I K+ P F+ + + DF + + Sbjct: 56 ARVHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVE 115 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Sbjct: 116 ELGCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRR 175 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 F K E K V + + K R + EL H + + LG+ IW Sbjct: 176 Q----FDLMGAAAE-EKMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIW 230 Query: 238 DRYISSNQ 245 + ++ Sbjct: 231 RKEAVPSE 238 >gi|15677367|ref|NP_274522.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58] gi|7226758|gb|AAF41870.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58] gi|261392239|emb|CAX49759.1| DNA polymerase III epsilon subunit [Neisseria meningitidis 8013] gi|308389659|gb|ADO31979.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha710] gi|316986028|gb|EFV64965.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76] gi|325130586|gb|EGC53333.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis OX99.30304] gi|325136592|gb|EGC59193.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M0579] gi|325140658|gb|EGC63175.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis CU385] gi|325199883|gb|ADY95338.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76] gi|325201794|gb|ADY97248.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240149] gi|325208453|gb|ADZ03905.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NZ-05/33] Length = 244 Score = 125 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 9/241 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R E + Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I K+ P F+ + + DF + + + Sbjct: 63 IQVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M F Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQ----FD 178 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 K E K V + + K R + EL H + + LG+ IW + + Sbjct: 179 LMGAAAE-EKMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIWRKEAVPS 237 Query: 245 Q 245 + Sbjct: 238 E 238 >gi|254670687|emb|CBA06809.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha153] Length = 244 Score = 125 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 56/241 (23%), Positives = 100/241 (41%), Gaps = 9/241 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R E + Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I K+ P F+ + + DF + + + Sbjct: 63 IEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M + Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL--- 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 E + K V + + K + + EL H+K + LG+ IW + + Sbjct: 180 --MGEAEEEEPAAKPVASAEMKLGAKLKVIKADEAELAAHEKYLDGLGEACIWRKEAVPS 237 Query: 245 Q 245 + Sbjct: 238 E 238 >gi|240014290|ref|ZP_04721203.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae DGI18] gi|240117765|ref|ZP_04731827.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae PID1] gi|240121853|ref|ZP_04734815.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae PID24-1] gi|240125570|ref|ZP_04738456.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae SK-92-679] gi|268603465|ref|ZP_06137632.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1] gi|268684159|ref|ZP_06151021.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679] gi|268587596|gb|EEZ52272.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1] gi|268624443|gb|EEZ56843.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679] Length = 244 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 9/241 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R E + Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I K+ P F+ + + DF + + + Sbjct: 63 IQVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCTVT 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M + Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL--- 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 E + K V + + K + + EL H++ + LG+ IW + + Sbjct: 180 --MGETEEEETTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIWRKEAVPS 237 Query: 245 Q 245 + Sbjct: 238 E 238 >gi|325920993|ref|ZP_08182879.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC 19865] gi|325548527|gb|EGD19495.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC 19865] Length = 244 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 86/239 (35%), Positives = 132/239 (55%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 T EFL DKP F+ + EF + + I HNA FD+GF++ EL ++ + Sbjct: 60 TLEFLADKPLFADVVEEFLAYIDGAE--LIIHNAAFDLGFLDNELSLLGDNYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + ++ + L +P +T E H+ + L K A+WD Sbjct: 178 FA-SADAGQSTQDADGMISFDPALLLPRPRV-AVTASESQAHEARLAQLRKKAGRALWD 234 >gi|121635185|ref|YP_975430.1| DNA polymerase III, epsilon chain [Neisseria meningitidis FAM18] gi|120866891|emb|CAM10650.1| DNA polymerase III, epsilon chain [Neisseria meningitidis FAM18] Length = 253 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 11/248 (4%) Query: 3 RKNKM--RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE- 58 ++ M R+I+ D ETTGL + DR++E +E+++ T++ +++ P R E Sbjct: 6 KEADMIQRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEA 64 Query: 59 -ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + I K+ P F+ + + DF + + Sbjct: 65 ARVHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVE 124 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Sbjct: 125 ELGCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRR 184 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 F K E K V + + K R + EL H + + LG+ IW Sbjct: 185 Q----FDLMGAAAE-EKMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIW 239 Query: 238 DRYISSNQ 245 + ++ Sbjct: 240 RKEAVPSE 247 >gi|160872285|ref|ZP_02062417.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli] gi|159121084|gb|EDP46422.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli] Length = 235 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 92/241 (38%), Positives = 126/241 (52%), Gaps = 16/241 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTG D RIIEIG +EL+D T R F +L P GR + P A +HG+ Sbjct: 1 MRQIILDTETTGRDINNGHRIIEIGCLELIDRQLTKRQFHCYLNP-GRDSDPGAFAIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPSR 122 + EFL DKP F++I E +F + I HNA FD+ F+ E ++ K D + Sbjct: 60 STEFLMDKPVFTTIADELLNFIKDSQ--LIIHNAPFDLAFLEYELTLTKKKYKKMTDYCQ 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+D+L +AR+ HP RN L++LCKRY I S R KHGALLD+ LL+ VY+ M G + + Sbjct: 118 ILDSLLLARQLHPGQRNSLDALCKRYNIDHSKRDKHGALLDAELLARVYLAMTGGQTHLF 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIWDR 239 K + +KKT + T EEL H + +L W Sbjct: 178 NEPKPLTIQTHARQKKTTEATT------LPIIYATCEELTAHKNYLNHIYSLSGQCKWLH 231 Query: 240 Y 240 Y Sbjct: 232 Y 232 >gi|289664175|ref|ZP_06485756.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668767|ref|ZP_06489842.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 244 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 87/239 (36%), Positives = 130/239 (54%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 T EFL DKP F + EF + + I HNA FD+GF++ EL ++ + Sbjct: 60 TLEFLADKPLFGEVVDEFLAYIDGAE--LIIHNAAFDLGFLDNELSLLGDNYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + +LL +P +T E H+ + L K A+WD Sbjct: 178 FASADAGQQTNSASGMIAFDPALL-LPRPRV-AVTASESQAHEARLAQLRKKAGRALWD 234 >gi|294627921|ref|ZP_06706500.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666553|ref|ZP_06731794.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292597835|gb|EFF41993.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603697|gb|EFF47107.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 244 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 87/239 (36%), Positives = 130/239 (54%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 T EFL DKP F + EF + + I HNA FD+GF++ EL ++ + Sbjct: 60 TLEFLADKPLFGEVVDEFLAYIDGAE--LIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + +LL +P +T E H+ + L K A+WD Sbjct: 178 FASADAGQQTDAASGMIAFDPALL-LPRPRV-AVTASESQAHEARLAQLRKKAGRALWD 234 >gi|240016725|ref|ZP_04723265.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae FA6140] Length = 244 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 56/241 (23%), Positives = 100/241 (41%), Gaps = 9/241 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R E + Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I K+ P F+ + + DF + + + Sbjct: 63 IQVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCTVT 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL+IAR P + L++LC R+ + S R HGAL+D LL +VY+ M + Sbjct: 123 DTLAIAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL--- 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 E + K V + + K + + EL H++ + LG+ IW + + Sbjct: 180 --MGETEEEETTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIWRKEAVPS 237 Query: 245 Q 245 + Sbjct: 238 E 238 >gi|319760362|ref|YP_004124300.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia vafer str. BVAF] gi|318039076|gb|ADV33626.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia vafer str. BVAF] Length = 251 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 123/250 (49%), Gaps = 13/250 (5%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 + N R ++ D ETTG++ + +IIEIGAVE+++ S T F V+L PN R Sbjct: 1 MNINTTRYVILDTETTGMNKFGIHYEGHKIIEIGAVEIINRSLTKNKFHVYLNPN-RPVD 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINK 115 EA K+HGI+D FLKDKP FS I ++F F N + F E K Sbjct: 60 SEAFKIHGISDRFLKDKPVFSDISNKFLSFICGSNLVIHNASFDVGFLNFELRETNLKYK 119 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IID+L +AR P RN L++LC+RY I IS R+ H AL+D+ +L+ V++ M Sbjct: 120 TLETYCSIIDSLKLARNLFPGQRNSLDALCERYFIDISQRNLHNALIDAQILAYVFLAMT 179 Query: 176 VGGSQINFG---FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 G +++ +++ + + N+ + T EE H++ ++ + Sbjct: 180 GGQTEMQLTNDIINLDKNTSVLSDMQRSYNVDTQEIKSLNIIYATVEEKTNHNRYLELIE 239 Query: 233 K---NAIWDR 239 K +W + Sbjct: 240 KQSGKCLWKK 249 >gi|89900967|ref|YP_523438.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118] gi|89345704|gb|ABD69907.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118] Length = 233 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 106/238 (44%), Gaps = 12/238 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL + DRIIEIG VEL T +L P GR++ +AL++HGI Sbjct: 1 MRQIFLDTETTGLSADTGDRIIEIGCVELFKRKLTGNNKHFYLNP-GRESHEDALRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T FLKDKP F ++ E + + L + + D Sbjct: 60 TSAFLKDKPKFEAVADELLAYVKDAEIIIHNAPFDLGFLNKELALLGRPRFKEFVGSVTD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +A+ P RN LN+LC R G+ S R+ HGALLD+ LL+DVYI + G + Sbjct: 120 TLVMAKEMFPGKRNSLNALCDRLGVDNSGRALHGALLDAELLADVYINLTRGQDALLMEA 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239 E + + + +I +E HD + + K +W + Sbjct: 180 GATESESLQVVQIDLGSIV------LPVLAANDQESAAHDDVLNQIDKASGNKTVWRK 231 >gi|304387081|ref|ZP_07369332.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria meningitidis ATCC 13091] gi|304338830|gb|EFM04933.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria meningitidis ATCC 13091] gi|325132669|gb|EGC55354.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M6190] gi|325138557|gb|EGC61120.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis ES14902] gi|325204491|gb|ADY99944.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240355] Length = 244 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 9/241 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R E + Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I K+ P F+ + + DF + + + Sbjct: 63 IQVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M F Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQ----FD 178 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 K E K V + + K R + EL EH + + LG+ IW + + Sbjct: 179 LMGAAAE-EKMETKPVVHTETKRSGKLKVIRADENELAEHGQYLDGLGEACIWRKEAVPS 237 Query: 245 Q 245 + Sbjct: 238 E 238 >gi|264678862|ref|YP_003278769.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2] gi|299532427|ref|ZP_07045819.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44] gi|262209375|gb|ACY33473.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2] gi|298719665|gb|EFI60630.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44] Length = 243 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 117/242 (48%), Gaps = 9/242 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL + DR+IE+G VEL++ T ++ GR + P+AL++HGIT Sbjct: 3 RQIVLDTETTGLSAIDGDRLIELGCVELVNRKLTGNNLHLYFN-AGRDSHPDALRVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 EFLKDKP F E W++ +L + ++DT Sbjct: 62 TEFLKDKPRFEEKIDEIWEYLQGAELIIHNAPFDLGFLNNELKLAKRPPLKQCVGGVLDT 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +A+ +P RN L+SLC R G+ S+R+ HGALLD+ LL+DVYI + G + + Sbjct: 122 LVMAKEMYPGKRNSLDSLCDRLGVDNSNRTLHGALLDAELLADVYINLTRGQDALLMTEE 181 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDRYIS 242 + ++S K R ++E HD ++ + K++ W + + Sbjct: 182 PADAPAAGAIVVPSVDLSSFKLP---VLRANEQEQQSHDDVLKQMDKSSGGKTAWRNFEN 238 Query: 243 SN 244 + Sbjct: 239 VS 240 >gi|325142705|gb|EGC65085.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 961-5945] gi|325198636|gb|ADY94092.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis G2136] Length = 244 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 101/241 (41%), Gaps = 9/241 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R E + Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I K+ P F+ + + DF + + + Sbjct: 63 IEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M + Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL--- 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 E K E K V + + K R + EL EH + + LG+ IW + + Sbjct: 180 --MGEAAEEKMETKPVVHTETKRSGKLKVIRADENELAEHGQYLDGLGEACIWRKEAVPS 237 Query: 245 Q 245 + Sbjct: 238 E 238 >gi|297250280|ref|ZP_06863987.2| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC 43768] gi|296839296|gb|EFH23234.1| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC 43768] Length = 253 Score = 123 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 11/242 (4%) Query: 3 RKNKM--RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE- 58 ++ M R+I+ D ETTGL + DR++E +E+++ T++ +++ P R E Sbjct: 6 KEADMIQRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEA 64 Query: 59 -ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + I K+ P F+ + + DF + + Sbjct: 65 ARVHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVE 124 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Sbjct: 125 ELGCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR- 183 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 Q + E++ E K V + + K R + EL EH + + LG++ IW Sbjct: 184 -RQFDLMGAVAEEKM---ETKPVAHTETKRSGKLKVIRADENELAEHGQYLDGLGESCIW 239 Query: 238 DR 239 + Sbjct: 240 RK 241 >gi|33519691|ref|NP_878523.1| DNA polymerase III epsilon subunit [Candidatus Blochmannia floridanus] gi|33517354|emb|CAD83739.1| DNA polymerase III epsilon subunit [Candidatus Blochmannia floridanus] Length = 258 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 75/257 (29%), Positives = 116/257 (45%), Gaps = 20/257 (7%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 + N R +V D ETTG++ + RIIEIGAVE+++ TN F V+L PN R Sbjct: 1 MNINSNRYVVLDTETTGMNKFGVHYEGHRIIEIGAVEIINRRLTNNQFHVYLNPN-RSVD 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINK 115 EA +HGI+D+FL D+P F I ++F F + F + ++ Sbjct: 60 SEAFAIHGISDQFLVDQPCFLDIANDFLQFIRGSTLVIHNASFDLGFLNFELHNIYLNSR 119 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +ID+L +AR+ P RN L++LC+RY I S R H AL+D+ LL+ V++ M Sbjct: 120 TVESYCTVIDSLKLARKIFPGQRNSLDALCERYCIKNSKRILHNALIDAQLLAYVFLVMT 179 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTV---------PNISLLKRDKPLFTRITKEELDEHDK 226 G ++I F + N ++ T E EH+K Sbjct: 180 GGQTRIQFMDMLDNSDTNILNNTITHDNKFELCLNNSVCTEKKSLKILYATSIEKLEHEK 239 Query: 227 TIQTLGK----NAIWDR 239 + + K +W + Sbjct: 240 YLDFVMKASNNQCLWRK 256 >gi|261253702|ref|ZP_05946275.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891] gi|260937093|gb|EEX93082.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891] Length = 223 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 128/226 (56%), Gaps = 13/226 (5%) Query: 18 GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77 G + RIIEIGAVE+++ T R F V++ P+ R EA+++HGITDEFL DKP + Sbjct: 6 GPHYQGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RDIQSEAVEVHGITDEFLVDKPEYQ 64 Query: 78 SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSRIIDTLSIARRKH 134 + +EF DF +AHNA FD GF++ E ++ D ++ DTL++A++ Sbjct: 65 DVHAEFLDFIKGAE--LVAHNAPFDTGFMDYEFGMLDPTIGKTDDYCKVTDTLAMAKKIF 122 Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFK 194 P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G + + F ++ D + Sbjct: 123 PGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLQFNAGSSNDDGGE 182 Query: 195 EEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWD 238 K+ R R T +E+D H+K + + KN +W Sbjct: 183 AIKRAASG-----RKALKVLRATADEIDAHNKRLDIVEKNGSCLWR 223 >gi|241763763|ref|ZP_04761810.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN] gi|241366982|gb|EER61378.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN] Length = 237 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 111/236 (47%), Gaps = 11/236 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++ DRIIEIG VEL+ T +L P R + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSAEGGDRIIEIGCVELVSRKLTGNNKHFYLNPE-RDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +EFL+DKP F+++ E ++ EL + DT Sbjct: 62 NEFLRDKPKFAAVADELLEYLQGAEVIIHNAAFDVGFLNKELELLGRPALHTFVDSVTDT 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+ +P RN L++LC R G+ S R+ HGALLD+ LL+DVYI + G + Sbjct: 122 LAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLIIDD 181 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 + + L+ ++E+ H++ + + K IW Sbjct: 182 AQDSAGGGHFVQID-----LRSFTLPVLPANEQEIAAHEEVLVQIDKASGGKTIWR 232 >gi|118594819|ref|ZP_01552166.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Methylophilales bacterium HTCC2181] gi|118440597|gb|EAV47224.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Methylophilales bacterium HTCC2181] Length = 222 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 11/227 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGLD + R+IEI A+E + T+ F ++ P R+ A ++HGI Sbjct: 1 MRQIFLDTETTGLDPNQGHRVIEIAAIEFNNRQATSNRFHFYVNPQ-REIDAAAQEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T +FL DKP F I ++F F N + + K I+D Sbjct: 60 TLDFLNDKPLFVDIAADFIAFINGSELVIHNAPFDVGFLNMELGKIGMEKLESYCDGIMD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L A+ P RN L++LC+ + + S RS HGALLD+ LL +VYI+M G F Sbjct: 120 SLKFAKEIRPGQRNSLDALCRAFDVDNSTRSLHGALLDAQLLGEVYIQMTRGQEAFTINF 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 + + + + + T+ +E++ H+ ++++ Sbjct: 180 EEDSSKAALQSVDHGD---------LIVTQPALDEVEAHNSYLRSIN 217 >gi|319944001|ref|ZP_08018281.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia mirabilis ATCC 51599] gi|319742762|gb|EFV95169.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia mirabilis ATCC 51599] Length = 238 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 106/228 (46%), Gaps = 5/228 (2%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++V D ETTGL++ K RIIEIG VE+++ T +++ P R+ A +HG+T Sbjct: 6 RQVVLDTETTGLEASKGHRIIEIGCVEMVNRRITRNNLHLYINPE-REVDEGAAAVHGMT 64 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + L+DKP+F+ I +F DF + + + D+ Sbjct: 65 WDDLRDKPTFAQIVDQFLDFCRGAEIIIHNASFDTGFLDAELARLGRGTFASHVACVTDS 124 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++AR ++P RN+L++LC+R + HR+ HGALLDS LL++VY+ M G + G Sbjct: 125 LAMARERYPGKRNNLDALCERLMVPNKHRTLHGALLDSELLAEVYLGMTRGQGSFDIGSS 184 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 +D T E H++ + L K Sbjct: 185 AEDDEGGAVADAGGGRWPPT---GLRVRLATDAERQLHEQGLVALEKQ 229 >gi|239815139|ref|YP_002944049.1| DNA polymerase III, subunit epsilon [Variovorax paradoxus S110] gi|239801716|gb|ACS18783.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus S110] Length = 235 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 7/229 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++ DRIIE+G VEL T ++ P R++ +ALK+HG+T Sbjct: 3 RQIVLDTETTGLSAENGDRIIELGCVELFARKLTGNDLHIYFNPE-RESHEDALKVHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +FL+DKP F+++ ++ ++ EL + + DT Sbjct: 62 TDFLRDKPKFATLANDIVEYLRGAELIIHNAAFDVGFLNKELELAGLPPLRSFVGEVTDT 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A++ +P RN L++LC R+G+ S+R+ HGA LD+ LL+DVYI + G + Sbjct: 122 LAMAKQVYPGKRNSLDALCDRFGVDRSNRTFHGAKLDAQLLADVYINLTRGQDALLIDVA 181 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 +NE + TV I L + D P ++EL H+ + L K++ Sbjct: 182 SNE----PAQGTTVVAIDLSQFDLP-VIMAAEQELAAHEAVLSQLDKSS 225 >gi|113460748|ref|YP_718815.1| DNA polymerase III subunit epsilon [Haemophilus somnus 129PT] gi|170719139|ref|YP_001784286.1| DNA polymerase III subunit epsilon [Haemophilus somnus 2336] gi|112822791|gb|ABI24880.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT] gi|168827268|gb|ACA32639.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 2336] Length = 252 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 116/246 (47%), Gaps = 14/246 (5%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+I+ D ETTG++ + IIEIGAVE+++ T R +++ P+ R PEA+K+ Sbjct: 9 RQIILDTETTGMNEFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPD-RLVDPEAIKV 67 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGITDE L DKP FS+I EF DF + N + D Sbjct: 68 HGITDEMLADKPDFSAIAQEFIDFIKGAELIIHNAPFDIGFMDYEFKKHNFNINTADICL 127 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I DTL +AR+ +P RN L++LC R I S R+ HGALLD+ +L DVY+ M G + Sbjct: 128 ITDTLQMARQMYPGKRNSLDALCDRLNIDNSKRTLHGALLDAEILGDVYLAMTGGQTS-- 185 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 +E+ + + T+EE H ++ L +N +W Sbjct: 186 --LFGDEEHTPIITLEENIHQHTTNTHNFKLLLPTEEEKLAHQDYLKLLNQKSKENCLWF 243 Query: 239 RYISSN 244 + + Sbjct: 244 KRNTKE 249 >gi|123441273|ref|YP_001005260.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088234|emb|CAL11023.1| DNA polymerase III, epsilon chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 238 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 126/234 (53%), Gaps = 12/234 (5%) Query: 18 GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77 G+ + +IIEIGAVE+++ T R F V++ P+ R PEA +HGI+DEFL DKP+F+ Sbjct: 5 GVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGVHGISDEFLADKPTFA 63 Query: 78 SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRIIDTLSIARRKH 134 I EF +F I HNA FD+GF++ E + + +D I D+L +ARR Sbjct: 64 DITPEFLEFIRGAE--LIIHNAAFDIGFMDYEFRMLQQDIPKTETFCTITDSLLLARRLF 121 Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFK 194 P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + ++F + ++ + Sbjct: 122 PGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLSFSMEGDQTQNES 181 Query: 195 EEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWDRYISSNQ 245 E T++E+ H+ + + K +W + ++ Sbjct: 182 SEDIQRITRPAS---GLKIIYATEDEIAAHESRLDLVMKKGGSCLWRMPLETDD 232 >gi|296115251|ref|ZP_06833892.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter hansenii ATCC 23769] gi|295978352|gb|EFG85089.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter hansenii ATCC 23769] Length = 226 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 122/232 (52%), Gaps = 10/232 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I+FD ETTGLD DR+IEI A+EL+ + R+F+V + P R EA ++HG T Sbjct: 3 RSILFDTETTGLDPLNGDRVIEIAALELIGDLPSGRSFRVLIDPE-RDVPEEASRVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ +P F+ I EF F + IAHNA FD GF+NAE +R L +R++DT Sbjct: 62 RADLEGQPKFAQIADEFLAFIGDDE--LIAHNAAFDFGFLNAEFRRAGLPELAMTRMVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L IAR + P N L++LC+R+ I +S R+ H ALLD LL++VYI+ + GG Q G Sbjct: 120 LQIARARFPGMPNSLDALCRRFSIDLSARTTHNALLDCKLLAEVYIE-LSGGRQRGLGLS 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 E + + + E+ H + + + + +W Sbjct: 179 VEEGGTPSA----AYDYTRPAGHAVVRVVPDAAEIAAHARFVDEIS-DPLWR 225 >gi|21241847|ref|NP_641429.1| DNA polymerase III subunit epsilon [Xanthomonas axonopodis pv. citri str. 306] gi|21107228|gb|AAM35965.1| DNA polymerase III epsilon chain [Xanthomonas axonopodis pv. citri str. 306] Length = 244 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 87/239 (36%), Positives = 130/239 (54%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 T EFL DKP F + EF + + I HNA FD+GF++ EL ++ + Sbjct: 60 TLEFLADKPLFGEVVDEFLAYIDGAE--LIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + +LL +P +T E H+ + L K A+WD Sbjct: 178 FASADAGQQADAASGMIAFDPALL-LPRPRV-AVTASESQAHEARLAQLRKKAGRALWD 234 >gi|188578361|ref|YP_001915290.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522813|gb|ACD60758.1| DNA polymerase III, epsilon subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 244 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 87/239 (36%), Positives = 130/239 (54%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 T EFL DKP F + EF + + I HNA FD+GF++ EL ++ + Sbjct: 60 TLEFLADKPLFGDVVEEFLAYIDGAE--LIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + +LL +P +T E H+ + L K A+WD Sbjct: 178 FASADAGQQTDAASGMIAFDPALL-LPRPRV-AVTASESQAHEARLVQLRKKAGRALWD 234 >gi|58580665|ref|YP_199681.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622598|ref|YP_449970.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166710938|ref|ZP_02242145.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzicola BLS256] gi|58425259|gb|AAW74296.1| DNA polymerase III epsilon chain [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366538|dbj|BAE67696.1| DNA polymerase III epsilon chai [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 244 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 87/239 (36%), Positives = 130/239 (54%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSR 122 T EFL DKP F + EF + + I HNA FD+GF++ EL ++ + Sbjct: 60 TLEFLADKPLFGEVVEEFLAYIDGAE--LIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + +LL +P +T E H+ + L K A+WD Sbjct: 178 FASADAGQQTDAASGMIAFDPALL-LPRPRV-AVTASESQAHEARLVQLRKKAGRALWD 234 >gi|254456100|ref|ZP_05069529.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083102|gb|EDZ60528.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 220 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 125/230 (54%), Gaps = 14/230 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+++V D ETTG+ K RI+EIG +EL + T F +L P RK S +AL++HG Sbjct: 1 MKEVVLDTETTGISVKEGHRIVEIGCIELDNLIPTKNRFHCYLNPE-RKVSEKALEVHGY 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDEFL ++ FS I +F F ++ I HNA+FD+G +N EL K + + I+D Sbjct: 60 TDEFLSEQKKFSDIGEQFLAFIKDKR--LIIHNAEFDLGHLNNELSIFGKKKI-NNEIVD 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR K P S L++LCKRY I S R++H AL+D LLS VYI ++ + F Sbjct: 117 TLILARDKFPGSPVSLDALCKRYRIDNSIRTQHTALIDCDLLSKVYIN-LIDQKEPTLNF 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-LGKN 234 + + V + +++E+ +H++ ++ L KN Sbjct: 176 QNLDTETDNSNSSKVSYFK-------KVVKPSEDEIFKHNEYLKNHLKKN 218 >gi|254673235|emb|CBA08224.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha275] gi|325144796|gb|EGC67087.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240013] Length = 244 Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 98/235 (41%), Gaps = 9/235 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R E + Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I K+ P F+ + + DF + + + Sbjct: 63 IEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M F Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQ----FD 178 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 K E K V + + K R + EL EH + + LG+ IW + Sbjct: 179 LMGAAAE-EKMETKPVAHTETKRSGKLKVIRADENELAEHGRYLDGLGEACIWRK 232 >gi|167949084|ref|ZP_02536158.1| DNA polymerase III, epsilon subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 203 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 81/204 (39%), Positives = 118/204 (57%), Gaps = 7/204 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + RIIEIG VE++D + F +L P+ R+ A+++HGI Sbjct: 1 MRQIVLDTETTGLEPQQGHRIIEIGCVEMIDRRLSGNNFHQYLQPD-REIDAGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SR 122 T+EFL DKP F+ + ++F D+ I HNA FDVGF+N ELQ + D Sbjct: 60 TNEFLADKPRFADLAADFLDYIRGAE--LIIHNAPFDVGFLNHELQLMGADSPPIGELCA 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDTL +A++ HP RN L++LCKRY + + R HGALLD+ +L+DVY+ M G + ++ Sbjct: 118 VIDTLVMAKKMHPGQRNSLDALCKRYDVDNTQRELHGALLDAEILADVYLAMTGGQATLS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLL 206 E + + I Sbjct: 178 LEMTRAEGESTADVDGGIRRIRYT 201 >gi|218768496|ref|YP_002343008.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491] gi|254805280|ref|YP_003083501.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis alpha14] gi|121052504|emb|CAM08843.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491] gi|254668822|emb|CBA06831.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis alpha14] gi|319410744|emb|CBY91127.1| DNA polymerase III epsilon subunit [Neisseria meningitidis WUE 2594] gi|325127153|gb|EGC50103.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis N1568] Length = 244 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 99/241 (41%), Gaps = 9/241 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R E + Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I K+ P F+ + + DF + + + Sbjct: 63 IEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M + Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL--- 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 E + K V + + K + + EL H + + LG+ IW + + Sbjct: 180 --MGEAEEEEPAAKPVASAEMKLGAKLKVIKADEAELAAHGQYLDGLGEACIWRKEAVPS 237 Query: 245 Q 245 + Sbjct: 238 E 238 >gi|325205739|gb|ADZ01192.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M04-240196] Length = 244 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 99/241 (41%), Gaps = 9/241 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R E + Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I K+ P F+ + + DF + + + Sbjct: 63 IEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVT 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M + Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL--- 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 E + K V + + K + + EL H + + LG+ IW + + Sbjct: 180 --MGEAEEEEPAAKPVASAEMKLGAKLKVIKADEAELAAHGQYLDGLGEACIWRKEAVPS 237 Query: 245 Q 245 + Sbjct: 238 E 238 >gi|34496712|ref|NP_900927.1| DNA-directed DNA polymerase subunit epsilon [Chromobacterium violaceum ATCC 12472] gi|34102567|gb|AAQ58932.1| DNA-directed DNA polymerase, epsilon chain [Chromobacterium violaceum ATCC 12472] Length = 239 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 107/244 (43%), Gaps = 13/244 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGLD + RIIE +E++ T + +++ P R+ PEA ++HGI Sbjct: 1 MRQIILDTETTGLDPQQGHRIIEFAGLEMVGRKLTGKHLHLYIHPE-REIDPEAQRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL KP F+ + E DF + I + +ID Sbjct: 60 SLEFLAGKPVFAKVAHEIADFLRDAELIIHNAPFDVGFLNAEFAKAGIEPVGKLCASVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+ AR P RN L++LC R+ I S+R+ HGAL+D LLS+VY+ M G + Sbjct: 120 TLAEARDMFPGKRNSLDALCDRFEIDRSNRTLHGALVDCELLSEVYLWMTRGQESLAMDI 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYI 241 + + +R ++ E EH + L K +W Sbjct: 180 EVELPGGDAGAIQ-------FERKPLKVLAASEAEEAEHQAYLDVLDKAVKGICVWRGLA 232 Query: 242 SSNQ 245 S Q Sbjct: 233 SPAQ 236 >gi|117923346|ref|YP_863963.1| DNA polymerase III subunit epsilon [Magnetococcus sp. MC-1] gi|117607102|gb|ABK42557.1| DNA polymerase III, epsilon subunit [Magnetococcus sp. MC-1] Length = 237 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 86/239 (35%), Positives = 134/239 (56%), Gaps = 12/239 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG D K RIIEIG VEL++ K Q ++ P R+ +A K+HGIT Sbjct: 3 RLIVLDTETTGFDPKEGHRIIEIGCVELVNMRK-GDERQWYVNPE-REIPADATKVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIID 125 D + + P F I+ EF F E + + HNA+FD+ F+NAE + + + R ID Sbjct: 61 DADVANSPKFKEIYHEFLAFIGEDS--LVIHNAEFDMRFLNAELTRLNKRLVMPMERAID 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +ARRK P S +L++LCKR G+ S R+ HGALLD+HLL++VY+++M G+Q + Sbjct: 119 TIPLARRKFPGSTVNLDALCKRLGVDNSGRTFHGALLDAHLLAEVYVELMG-GNQFSLEM 177 Query: 186 KTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTLGKN---AIWDR 239 +E + + + + P ++++E H+ +Q L + A+W++ Sbjct: 178 AADESGRIAQPSDSPKDGAPGPGLMMAPRDWQVSEESTQAHEAFLQLLDRESGGAVWNK 236 >gi|311085987|gb|ADP66069.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 237 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 80/241 (33%), Positives = 116/241 (48%), Gaps = 12/241 (4%) Query: 5 NKMRKIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N+ R I+ D ETTG L N RIIEIGAVE++D T F V++ P GR A Sbjct: 2 NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 LK+HGIT++FL DKP F I F ++ + E+ Sbjct: 61 LKVHGITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINT 120 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I+DTL +AR+ P +N L++LC RY I SHR+ H A++DS+LL +Y+ M G Sbjct: 121 FCSIVDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTGGQD 180 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIW 237 ++ +KE K + LK + T +E D H+K +Q + +W Sbjct: 181 S----LFSDNTINYKENFKKLKKNIQLKNNTLRILHPTLKENDLHEKYLQYMKDKSTCLW 236 Query: 238 D 238 + Sbjct: 237 N 237 >gi|160899427|ref|YP_001565009.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1] gi|160365011|gb|ABX36624.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1] Length = 238 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 77/242 (31%), Positives = 113/242 (46%), Gaps = 11/242 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR+IE+G VE+++ T ++ GR + P+AL++HGIT Sbjct: 3 RQIILDTETTGLSADNGDRLIELGCVEMVNRKLTGNNLHLYFN-AGRDSHPDALRVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 EFLKDKP F E W++ EL S +IDT Sbjct: 62 TEFLKDKPRFEHKVDEIWEYLQGAELIIHNAPFDLGFLNKELELANRPPIRQCVSGVIDT 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +A+ P RN L+SLC R + S R+ HGALLD+ LL+DVYI + G Sbjct: 122 LVMAKEMFPGKRNSLDSLCDRLEVDNSGRTLHGALLDAELLADVYINLTRGQE----ALL 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDRYIS 242 E+ E V + L K +EL H+ + + K++ IW + + Sbjct: 178 MAEEPVQSEGGLVVAQVDLASF-KLRVVHANDQELAAHEDVMVQMDKSSGGKTIWRGFEN 236 Query: 243 SN 244 + Sbjct: 237 RS 238 >gi|319794398|ref|YP_004156038.1| DNA polymerase iii, epsilon subunit [Variovorax paradoxus EPS] gi|315596861|gb|ADU37927.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus EPS] Length = 240 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 7/229 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++ DR+IE+G VEL T ++ P R++ +ALK+HG+T Sbjct: 3 RQIVLDTETTGLSAENGDRVIELGCVELFARKLTGNDLHIYFNPE-RESHEDALKVHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +FL+DKP F+++ ++ ++ E + + + DT Sbjct: 62 TDFLRDKPKFATLANDIIEYLRGAELIIHNAAFDVGFLNKEFERAGLPPLRTFVAEVTDT 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+ +P RN L++LC R+G+ S+R+ HGA LD+ LL+DVYI + G + Sbjct: 122 LAMAKLVYPGKRNSLDALCDRFGVDRSNRTFHGAKLDAQLLADVYINLTRGQDALLIDVA 181 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 +NE + TV I L + + P ++EL H+ + L K++ Sbjct: 182 SNE----PAQGTTVVAIDLSQFELP-VIAAGEQELAAHEAVLSQLDKSS 225 >gi|114777499|ref|ZP_01452496.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus ferrooxydans PV-1] gi|114552281|gb|EAU54783.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus ferrooxydans PV-1] Length = 300 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 86/245 (35%), Positives = 123/245 (50%), Gaps = 18/245 (7%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK---TNRTFQVFLCPNGRKNSPEALKL 62 MR I+ D ETTGL DR++EIGA+E+L+ F ++ P R E +++ Sbjct: 53 MRLIMLDTETTGLSPLNGDRMVEIGAIEVLNRKVLSGDKHVFHRYINPE-RNIPDEVVRI 111 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI + +KD+P+F I EF DF A + HNA FD+GFI EL+ N + + Sbjct: 112 HGIDNAKVKDQPTFREIAQEFLDFIEG--ATLVIHNAPFDLGFIMNELRINNFPEIGHMQ 169 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDTL AR KHP RN+L++LC RY I HR HGALLDS LL++VY+ M G Q + Sbjct: 170 VIDTLVFAREKHPHQRNNLDALCDRYNIERGHRELHGALLDSELLAEVYLGMTG-GRQFS 228 Query: 183 FGFKTNEDRFF------KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--- 233 G + + + + I +E+L H ++ + K Sbjct: 229 LGMDATRLPASAFVQLPETSRGRSEKAETARIMRRKALHIPEEDLSAHHLMLKRIHKESG 288 Query: 234 -NAIW 237 IW Sbjct: 289 GQCIW 293 >gi|219681615|ref|YP_002468001.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682172|ref|YP_002468556.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471303|ref|ZP_05635302.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621905|gb|ACL30061.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624458|gb|ACL30613.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311087677|gb|ADP67756.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 237 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 81/241 (33%), Positives = 116/241 (48%), Gaps = 12/241 (4%) Query: 5 NKMRKIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N+ R I+ D ETTG L N RIIEIGAVE++D T F V++ P GR A Sbjct: 2 NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 LK+HGIT++FL DKP F I F ++ + E+ Sbjct: 61 LKVHGITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINT 120 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 IIDTL +AR+ P +N L++LC RY I SHR+ H A++DS+LL +Y+ M G Sbjct: 121 FCSIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTGGQD 180 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIW 237 ++ +KE K + LK + T +E D H+K +Q + +W Sbjct: 181 S----LFSDNTINYKENFKKLKKNIQLKNNTLRILHPTLKENDLHEKYLQYMKDKSTCLW 236 Query: 238 D 238 + Sbjct: 237 N 237 >gi|311087143|gb|ADP67223.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 237 Score = 120 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 81/241 (33%), Positives = 116/241 (48%), Gaps = 12/241 (4%) Query: 5 NKMRKIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N+ R I+ D ETTG L N RIIEIGAVE++D T F V++ P GR A Sbjct: 2 NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 LK+HGIT++FL DKP F I F ++ + E+ Sbjct: 61 LKVHGITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDIGFINQELEILNKKIKINT 120 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 IIDTL +AR+ P +N L++LC RY I SHR+ H A++DS+LL +Y+ M G Sbjct: 121 FCSIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTGGQD 180 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIW 237 ++ +KE K + LK + T +E D H+K +Q + +W Sbjct: 181 S----LFSDNTINYKENFKKLKKNIQLKNNTLRILHPTLKENDLHEKYLQYMKDKSTCLW 236 Query: 238 D 238 + Sbjct: 237 N 237 >gi|240142395|ref|YP_002966905.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens AM1] gi|240012339|gb|ACS43564.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens AM1] Length = 248 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 83/241 (34%), Positives = 125/241 (51%), Gaps = 8/241 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 MI R +V D ETTG D K DRIIE+G VE+++ +T R F ++ P R +A Sbjct: 1 MIYSQ--RIVVGDTETTGTDPKGGDRIIEVGFVEIVNGFRTGRHFHSYVNPE-RPVPADA 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGITDE LKD P F+++ ++ +F + A + HNA FD+GF + E ++ LD Sbjct: 58 TAIHGITDEMLKDAPVFAAVAADIVEFIADSPAIF--HNAPFDLGFFDLEFGLLSLPSLD 115 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 SR+ D+L AR+ P+ L++LC RYGI + R+KHGAL+DS LL+DV++ M G Sbjct: 116 RSRVTDSLVHARKLLPAGAKAGLDALCNRYGIDRTRRTKHGALMDSELLADVWLAMTGTG 175 Query: 179 S-QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 FG + + + + L + E + H + T +W Sbjct: 176 GLAHGFGPAAQAEESAAVGRVPLRRHAPEVAASLLRLVPSDHEAERHSSFVATQLVKPLW 235 Query: 238 D 238 Sbjct: 236 K 236 >gi|27904727|ref|NP_777853.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340041|sp|Q89AN3|DPO3E_BUCBP RecName: Full=DNA polymerase III subunit epsilon gi|27904124|gb|AAO26958.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 245 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 120/244 (49%), Gaps = 16/244 (6%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 RKIV DIETTG++ KN +IIEIGAVE+++ T F ++ PN R ++ K+ Sbjct: 6 RKIVLDIETTGMNPAGCFYKNHKIIEIGAVEMINNVFTGNNFHSYIQPN-RLIDKQSFKI 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPS 121 HGITD FL DKP F I +F ++ + + + + D Sbjct: 65 HGITDNFLLDKPKFHEISVKFLEYITNSDLIIHNAKFDVGFINYELNMINSDKRKISDYC 124 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR+ P +N L++LC RY I +SHR H AL+D+ LL+ VY M I Sbjct: 125 NVVDTLPLARQLFPGKKNSLDALCNRYKINVSHRDFHSALIDAKLLAKVYTFMTSFQQSI 184 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG---KNAIW- 237 + K + ++ K + + TK+EL +H K ++ + N +W Sbjct: 185 SIFDKNSNLNSIQKNAKLDSRVPF----RSTLLLATKDELQQHMKYLKYVKQETGNCVWL 240 Query: 238 -DRY 240 D+Y Sbjct: 241 EDKY 244 >gi|15616860|ref|NP_240073.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11132278|sp|P57337|DPO3E_BUCAI RecName: Full=DNA polymerase III subunit epsilon gi|25299956|pir||G84958 DNA-directed DNA polymerase (EC 2.7.7.7) epsilon chain [imported] - Buchnera sp. (strain APS) gi|10038924|dbj|BAB12959.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 237 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 82/241 (34%), Positives = 115/241 (47%), Gaps = 12/241 (4%) Query: 5 NKMRKIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N+ R I+ D ETTG L N RIIEIGAVE++D T F V++ P GR A Sbjct: 2 NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 LK+HGIT++FL DKP F I F ++ + E+ Sbjct: 61 LKVHGITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINT 120 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 IIDTL IAR P +N L++LC RY I SHR+ H A++DS+LL +Y+ M G Sbjct: 121 FCSIIDTLKIARELFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTGGQD 180 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIW 237 ++ +KE K + LK + T +E D H+K +Q + +W Sbjct: 181 S----LFSDNTINYKENFKKLKKNIQLKNNTLRILHPTLKENDLHEKYLQYMKDKSTCLW 236 Query: 238 D 238 + Sbjct: 237 N 237 >gi|121609336|ref|YP_997143.1| DNA polymerase III subunit epsilon [Verminephrobacter eiseniae EF01-2] gi|121553976|gb|ABM58125.1| DNA polymerase III, epsilon subunit [Verminephrobacter eiseniae EF01-2] Length = 237 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 11/236 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL + DRIIE+G VELL+ T ++ P GR + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSADSGDRIIELGCVELLNRKLTGNNLHLYFNP-GRDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +EFLKDKP F+ + + + EL R+ DT Sbjct: 62 NEFLKDKPRFAELVDDILQYLQGAELIIHNAAFDVGFLNKELELAGHPALAHCVERVTDT 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+ +P RN L++LC R G+ S R+ HGALLD+ LL+DVYI + G + Sbjct: 122 LAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYIHLTRGQKALLI--- 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 ++ + I L P +E H + + + K IW Sbjct: 179 -ADEAQPSATDLPLLPIDLHALVLP-VLHANAQEQQAHAEVLAQIDKASGGKTIWR 232 >gi|254796828|ref|YP_003081665.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str. Illinois] gi|254590057|gb|ACT69419.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str. Illinois] Length = 228 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 87/236 (36%), Positives = 131/236 (55%), Gaps = 17/236 (7%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 RK++ D ETTGLD DR+IEIG VE++D+ T F ++L P R+ S EA ++HGIT Sbjct: 5 RKVILDTETTGLDMKNGDRVIEIGCVEMVDFRITGEIFHIYLNPE-REISKEATRVHGIT 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIID 125 E L D P F I +F F AHNA FD+ F+N+E ++ + + +ID Sbjct: 64 FEQLADSPKFIDIADDFLQFIGSSEIV--AHNASFDIRFLNSELIRARQRRLIKLENVID 121 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR+ P S L++LC+R+ I++ R HGALLD+ LL+ VYI+ + GSQ++ F Sbjct: 122 TLAMARKIFPGSPASLDALCRRFRISLEQREFHGALLDAQLLARVYIE-LSKGSQVSMSF 180 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 ++ + K + L T EE H + I+ L K+ +WD + Sbjct: 181 LEGSSASSEK--------KMFKEREKLII--TPEESLAHSELIKRL-KDPLWDEIL 225 >gi|309782421|ref|ZP_07677145.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA] gi|308918758|gb|EFP64431.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA] Length = 242 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 67/190 (35%), Positives = 102/190 (53%), Gaps = 2/190 (1%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL++ DR+IEIG VE+++ T R ++ P R+ A+ +HGI Sbjct: 1 MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+EF+ DKP F+ I +E D+ A + + + S ID Sbjct: 60 TNEFVADKPKFAEIVNEIRDYVQGAEAIIHNAAFDLGFLDMEFQRLGLPPFREHLSGHID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL AR+ P RN L++LC R GI+ +HR+ HGALLD+ LL++VY+ M G + + Sbjct: 120 TLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDM 179 Query: 186 KTNEDRFFKE 195 + + E Sbjct: 180 LESGEGASAE 189 >gi|241663345|ref|YP_002981705.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12D] gi|240865372|gb|ACS63033.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12D] Length = 242 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 67/190 (35%), Positives = 102/190 (53%), Gaps = 2/190 (1%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL++ DR+IEIG VE+++ T R ++ P R+ A+ +HGI Sbjct: 1 MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+EF+ DKP F+ I +E D+ A + + + S ID Sbjct: 60 TNEFVADKPKFAEIVNEIRDYVQGAEAIIHNAAFDLGFLDMEFQRLGLPPFREHLSGHID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL AR+ P RN L++LC R GI+ +HR+ HGALLD+ LL++VY+ M G + + Sbjct: 120 TLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDM 179 Query: 186 KTNEDRFFKE 195 + + E Sbjct: 180 LESGEGASAE 189 >gi|311086562|gb|ADP66643.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 237 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 81/241 (33%), Positives = 115/241 (47%), Gaps = 12/241 (4%) Query: 5 NKMRKIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N+ R I+ D ETTG L N RIIEIGAVE++D T F V++ P GR A Sbjct: 2 NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 LK+HGIT++FL DKP F I F ++ + E+ Sbjct: 61 LKVHGITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINT 120 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 IIDTL +AR+ P +N L++LC RY I SHR+ H A++DS+LL +Y+ M G Sbjct: 121 FCSIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTGGQD 180 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIW 237 ++ +KE K + LK + T +E D H+K +Q + +W Sbjct: 181 S----LFSDNTINYKENFKKLKKNIQLKNNTLRILHPTLKENDLHEKYLQYMKDKSTCLW 236 Query: 238 D 238 Sbjct: 237 S 237 >gi|187929152|ref|YP_001899639.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12J] gi|187726042|gb|ACD27207.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12J] Length = 242 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 66/190 (34%), Positives = 102/190 (53%), Gaps = 2/190 (1%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL++ DR+IEIG VE+++ T R ++ P R+ A+ +HGI Sbjct: 1 MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+EF+ DKP F+ I +E D+ A + + + S ID Sbjct: 60 TNEFVADKPKFAEIVNEIRDYVQGAEAIIHNAAFDLGFLDMEFQRLGLPAFREHLSGHID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL AR+ P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G + + Sbjct: 120 TLREARQMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDM 179 Query: 186 KTNEDRFFKE 195 + + E Sbjct: 180 LESGEGASAE 189 >gi|329118044|ref|ZP_08246757.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327465932|gb|EGF12204.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 247 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 121/246 (49%), Gaps = 17/246 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE- 58 M R+ R+I+ D ETTGL S + DRI+E +E+ T RT +++ P+ R E Sbjct: 1 MARE---RQIILDTETTGLYSDRGDRILEFAGIEMRKRRLTERTLHLYIHPD-RDIPEEA 56 Query: 59 -ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 A+ + K+ P F+++ E DF I HNA+FDVGF++ E +R+ Sbjct: 57 AAVHGITLDTLAEKNAPKFAAVGQEIADFLRGAE--LIIHNARFDVGFLDMEFERMGLPT 114 Query: 118 LDP--SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ + DTL++AR K+P + L++LC R I S R HGAL+D LL++VY+ M Sbjct: 115 IEELGCEVTDTLAMAREKYPGQKASLDALCGRLDIDRSKRVYHGALIDCELLAEVYLAMT 174 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---- 231 Q + ++++ + T L++ + + EL H + + Sbjct: 175 R--EQFDLVGGSDDNNGDTPAQNTRTAAPLVRTGRLKVIKADATELAAHAAILDEINQAT 232 Query: 232 GKNAIW 237 G + +W Sbjct: 233 GGHCLW 238 >gi|325267110|ref|ZP_08133779.1| DNA-directed DNA polymerase III epsilon subunit [Kingella denitrificans ATCC 33394] gi|324981463|gb|EGC17106.1| DNA-directed DNA polymerase III epsilon subunit [Kingella denitrificans ATCC 33394] Length = 245 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 117/233 (50%), Gaps = 9/233 (3%) Query: 8 RKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 R+I+ D ETTG + DR+IE +E+++ T +++ P R EA +H Sbjct: 4 RQIILDTETTGFEHSRADNPDRMIEFAGLEMVNRQFTQNDLHLYIHPE-RDIPAEATAVH 62 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSR 122 GIT + L DKP F+ + + +DF HNAKFDVGF+NAE R+ +D Sbjct: 63 GITLDDLADKPVFADVAQQIFDFLKGAELI--IHNAKFDVGFLNAEFARVGLPNIDSVCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+++P +N L++LC R G+ S R HGAL+D LL VY+ M G ++ Sbjct: 121 VVDTLEMARKRYPGQKNSLDALCTRLGVDRSRRVLHGALIDCELLGGVYLAMTRGQFSLD 180 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 F + K + L K ++EE H+ + L K A Sbjct: 181 DAFAADNAVSAGNAAKGAL-AAPLSAGKLKVQAASEEECAAHENYLDGLDKAA 232 >gi|74317680|ref|YP_315420.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC 25259] gi|74057175|gb|AAZ97615.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans ATCC 25259] Length = 232 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 2/196 (1%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGLD + RIIE+ AVE+++ T ++ P+ R A+++HGI Sbjct: 1 MRQIILDTETTGLDPAQGHRIIEVAAVEMVNRRLTGNHLHRYVNPD-RDIDAGAMQVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL+DKP F I EF DF + + L + + D Sbjct: 60 TPEFLQDKPRFGDIAREFVDFIDGAELIIHNAPFDVGFLNMELRLLGMPLLATCCGGVTD 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ HP RN+L++LCKRY + + R+ HGALLD LL+ VY+ + G ++ G Sbjct: 120 TLAMAKALHPGQRNNLDALCKRYAVDNTARTLHGALLDCELLAAVYLALTRGQESLSIGL 179 Query: 186 KTNEDRFFKEEKKTVP 201 + + + P Sbjct: 180 EIPRSESGRAADRPRP 195 >gi|218513681|ref|ZP_03510521.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3] Length = 229 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 96/192 (50%), Positives = 129/192 (67%), Gaps = 3/192 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK +F+ + E FF + AHNA FD+GFINAE RI P+ P R++DT Sbjct: 61 DEFLKDKKAFAEVAEEILAFFGDAKWI--AHNATFDMGFINAEFARIGLPPILPERVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRKHP N L++LC+RYG+ SHR+KHGALLDS LL++VYI+M+ G Q G Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMIG-GRQAALGLG 177 Query: 187 TNEDRFFKEEKK 198 + + Sbjct: 178 LSGQSGQTARGE 189 >gi|294788746|ref|ZP_06753987.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC 29453] gi|294483228|gb|EFG30914.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC 29453] Length = 272 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 112/238 (47%), Gaps = 10/238 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 MI R+I+ D ETTGL + DR+IE +E+++ T R + + P R+ S Sbjct: 1 MILDKDKRQIILDTETTGLYANAAENPDRLIEFAGLEMMNRQLTGRNLHLLIHPQ-REIS 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-INAELQRINK 115 EA +H IT L DKP F+ + + +DF I HNAKFDVGF + Sbjct: 60 EEATAVHNITLSQLVDKPIFAQVAQQIFDFIKGAE--LIIHNAKFDVGFLNAEFARVGLP 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + I DTL +A+ + +N L++LC R G+ S R HGAL+D LLS+VY+ M Sbjct: 118 NVETICEITDTLEMAKNLYHGQKNSLDALCNRLGVDRSKRVFHGALIDCELLSEVYLGMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 Q + ++ E + V + + ++EL H+ + L K Sbjct: 178 R--GQFSLMADWEDEDENSEINQIVVQHTFQRTGSLKVVLANEDELAAHEAILADLDK 233 >gi|17546591|ref|NP_519993.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum GMI1000] gi|17428890|emb|CAD15574.1| probable dna polymerase III (epsilon chain) protein [Ralstonia solanacearum GMI1000] Length = 242 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 68/190 (35%), Positives = 101/190 (53%), Gaps = 2/190 (1%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR+IEIG VEL++ T R +L P R+ A+ +HGI Sbjct: 1 MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYLNPE-REIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+EF+ DKP F+ + E D+ A + + + + ID Sbjct: 60 TNEFVADKPKFAEVVDEIRDYVQGAEAIIHNAAFDLGFLDMEFKRLGLPPFREHLAGHID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL ARR P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G + + Sbjct: 120 TLLDARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDM 179 Query: 186 KTNEDRFFKE 195 + + E Sbjct: 180 LESGETAAAE 189 >gi|238762660|ref|ZP_04623629.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC 33638] gi|238698965|gb|EEP91713.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC 33638] Length = 259 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 129/246 (52%), Gaps = 11/246 (4%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119 HGI+DEFL DKP+F+ I SEF +F + HNA FD+GF++ E + + +D Sbjct: 71 HGISDEFLADKPTFADIASEFLEFIRGAE--LVIHNAAFDIGFMDYEFRMLQQDIPKTET 128 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 ++F + ++ + E + + G + +W Sbjct: 189 SLSFSMEGDQSQNNSSEDIQRITRPASGLKIIYAAEEEIAAHESRLDLVMKKGGSCLWRM 248 Query: 240 YISSNQ 245 + + Sbjct: 249 PLETED 254 >gi|197335831|ref|YP_002156764.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11] gi|197317321|gb|ACH66768.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11] Length = 223 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 126/221 (57%), Gaps = 10/221 (4%) Query: 21 SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80 + RI+EIGAVE+++ T F V++ P+ R EA+ +HGITDEFL DKP + I Sbjct: 9 YEGHRIVEIGAVEIINRKLTGNHFHVYIKPD-RLIDLEAIDVHGITDEFLYDKPEYKDIH 67 Query: 81 SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSRIIDTLSIARRKHPSS 137 EF +F +AHNA FDVGF++ E ++NK +I DTL++A++ P Sbjct: 68 DEFLEFIKGAE--LVAHNAPFDVGFMDYEFSKLNKLIGTTDQYCKITDTLAMAKKIFPGK 125 Query: 138 RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEK 197 RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G + ++F N +E Sbjct: 126 RNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLSFSSGDNSSDSDEETI 185 Query: 198 KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 K + R R T +EL+ H+K + +G +W Sbjct: 186 KRLN----SGRKGLKVLRATADELEAHEKRLDIVGDACLWR 222 >gi|295698439|ref|YP_003603094.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola USDA] gi|291157346|gb|ADD79791.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola USDA] Length = 249 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 115/242 (47%), Gaps = 13/242 (5%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 RKI+ D ETTG+ + IIEIGAVE+++ T F V++ P R P+A ++ Sbjct: 7 RKIILDTETTGMSSSGHPYEGHNIIEIGAVEMINRELTGNLFHVYINPK-RSVDPKAFEI 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPS 121 H I+D FLKDKP+FS I +F DF + + ++ Sbjct: 66 HKISDNFLKDKPTFSEIVDDFVDFIRNSELIIHNASFDVGFINHELSRIEYSFCSIKKIC 125 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 RI DTL IAR P +N L++LC RY I S RS H A+LD+ +LS++Y M QI Sbjct: 126 RITDTLKIARSLFPGKKNSLDALCDRYHIDRSKRSVHSAILDAKILSEIYKLMTG--GQI 183 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI----QTLGKNAIW 237 +F F + ++ + + + L +E H+ + + +GK +W Sbjct: 184 SFNFDHDLEKKENFLNQYYFQRKRKRTRESLVIYANSKEQYCHEFILNTIEKKIGKKTLW 243 Query: 238 DR 239 + Sbjct: 244 RK 245 >gi|71892007|ref|YP_277737.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796113|gb|AAZ40864.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 249 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 127/250 (50%), Gaps = 13/250 (5%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 + N +R+IV D ETTG++ + R+IEIGAVE+++ T+ TF V+L PN R Sbjct: 1 MSTNIIRQIVLDTETTGMNKFGPHYEGHRVIEIGAVEIINRHLTDNTFHVYLKPN-RMID 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINK 115 EA+++HGI+D+FLK+KP FS I +EF F + + +K Sbjct: 60 IEAIQVHGISDQFLKNKPIFSEIINEFLTFIRGSELIIHNASFDLGFLNQELRICKANSK 119 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDSHLLSDVYIKM 174 +ID+L +AR+K P RN L++LC+RY I + R+ H ALLD+ LL++V++ M Sbjct: 120 KIESYCTVIDSLKLARKKFPGQRNSLDALCERYSINNGNRRNLHSALLDARLLANVFLSM 179 Query: 175 MVGGSQINFG--FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231 G ++ F TN + N + + ++E H++ + ++ Sbjct: 180 SGGQIKMKFMEIMNTNISNNKINNIIGLNNTKCINKRSLRIIYANEQEKLAHEEYLDSIQ 239 Query: 232 --GKNAIWDR 239 K IW + Sbjct: 240 QLNKFCIWRQ 249 >gi|300691174|ref|YP_003752169.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07] gi|299078234|emb|CBJ50881.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07] Length = 242 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 100/180 (55%), Gaps = 2/180 (1%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR+IEIG VEL++ T R ++ P R+ A+ +HGI Sbjct: 1 MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+EF+ DKP F+ I +E D+ A + + ++ + ID Sbjct: 60 TNEFVADKPKFAEIVAEIRDYVQGAEAIIHNAAFDLGFLDMEFQRLKLPSFREHLAGHID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL ARR P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G + + Sbjct: 120 TLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDM 179 >gi|299066469|emb|CBJ37657.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum CMR15] Length = 242 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 67/190 (35%), Positives = 99/190 (52%), Gaps = 2/190 (1%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR+IEIG VEL++ T R + P R+ A+ +HGI Sbjct: 1 MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYFNPE-RQIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+EF+ DKP F+ + E D+ A + + + ID Sbjct: 60 TNEFVADKPKFAEVVDEIRDYVQGAEAIIHNAAFDLGFLDMEFKRLGLPSFREHLDGHID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL ARR P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G + + Sbjct: 120 TLLDARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDM 179 Query: 186 KTNEDRFFKE 195 + + E Sbjct: 180 LESGETAAAE 189 >gi|240950342|ref|ZP_04754612.1| DNA polymerase III subunit epsilon [Actinobacillus minor NM305] gi|240295153|gb|EER45972.1| DNA polymerase III subunit epsilon [Actinobacillus minor NM305] Length = 253 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 130/249 (52%), Gaps = 17/249 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M+ + R++V D ETTG++ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MLEQEIHRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKP+F+ I EF F + HNA FDVGF++ E + Sbjct: 60 EEEAIKVHGITNEFLQDKPTFAEIVDEFVAFIKGAE--LVIHNAPFDVGFMDHEFSFLAN 117 Query: 116 DPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCTVTDSLALARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD----KTI 228 M QI + D + + + + + EL+ H Sbjct: 178 MMTG--GQIALLAEEEHDENPQVDLLEEGPKIAFDTSNSVILKADESELEAHQLFLKLLY 235 Query: 229 QTLGKNAIW 237 + KN IW Sbjct: 236 KKSKKNCIW 244 >gi|88608300|ref|YP_506355.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str. Miyayama] gi|88600469|gb|ABD45937.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str. Miyayama] Length = 228 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 89/236 (37%), Positives = 133/236 (56%), Gaps = 17/236 (7%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 RK++ D ETTGLD DR+IEIG VE++D+ T F ++L P R+ S EA ++HGIT Sbjct: 5 RKVILDTETTGLDMKNGDRVIEIGCVEVVDFRITGEIFHIYLNPE-REISKEATRVHGIT 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIID 125 E L D P F I +F F + AHNA FD+ F+N+E ++ + + +ID Sbjct: 64 FEQLADSPKFIDIADDFLKFIDSSEIV--AHNASFDIRFLNSELIRARQRRLIKLENVID 121 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR+ P S L++LC+R+ I++ R HGALLD+ LL+ VYI+ + GSQ++ F Sbjct: 122 TLAMARKIFPGSPASLDALCRRFRISLEQRELHGALLDAQLLARVYIE-LSKGSQVSMSF 180 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 ++ + K + L T EE EH + I+ L KN +WD + Sbjct: 181 LEGSSVSSEK--------KMFKEREKLII--TPEESLEHSELIRRL-KNPLWDEIL 225 >gi|146329568|ref|YP_001209798.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus VCS1703A] gi|146233038|gb|ABQ14016.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus VCS1703A] Length = 233 Score = 115 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 86/235 (36%), Positives = 128/235 (54%), Gaps = 14/235 (5%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R ++FD ETTG++ ++ RIIEIG VEL+D T F +L P + P+A K Sbjct: 4 RSVIFDTETTGMNFESDNKAEGHRIIEIGCVELIDRVPTEHYFHCYLNPE-QPVDPQAFK 62 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--D 119 +HGI+DEFL DKP F + EF + + +AHN FD FI+ ELQ D D Sbjct: 63 VHGISDEFLADKPFFKDVLPEFEAYLASADE-LVAHNIAFDRQFIDRELQLAGCDYRLGD 121 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++D+L IAR K +RN+L++LCKR+G+ + R HGALLD+ LL++VY+K+ G S Sbjct: 122 KFTLVDSLKIAREKFAGARNNLDALCKRFGVDNTGRELHGALLDAQLLAEVYLKLTGGQS 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP-LFTRITKEELDEHDKTIQTLGK 233 ++F E+K + K L + + E H+K ++ L + Sbjct: 182 DLSFAHPMMASARRAEQKTAA---TFAKTPCAWLPVDVPEAERALHEKILKQLKE 233 >gi|332967672|gb|EGK06783.1| DNA-directed DNA polymerase III epsilon subunit [Kingella kingae ATCC 23330] Length = 252 Score = 115 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 12/253 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 + + +R+I+ D ETTG + DR+IE +E+++ T +++ P N Sbjct: 1 MTETPIRQIILDTETTGFEHSAAENPDRMIEFAGLEMVNRQFTKNNLHLYIHPQRDINPD 60 Query: 58 EA-LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + + ++ P F+ + + +DF HNAKFDVGF++AE R+ Sbjct: 61 AIAVHGITLEKLESENAPVFAEVAQQIFDFIKGAELI--IHNAKFDVGFLDAEFARVGLP 118 Query: 117 PLDPSRII-DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + DTL +AR ++P +N L++LC R + S R HGAL+D LL +VY+ M Sbjct: 119 KVKTICTVVDTLEMARDRYPGQKNSLDALCNRLDVDRSRRVLHGALIDCELLGEVYLAMT 178 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK-- 233 G ++ F ++ L + + + EEL EH++ + L K Sbjct: 179 RGQFSLDAAFASDVAESSASPVIATTATLLPRPEYLKVQAASPEELAEHEEYLNQLDKAV 238 Query: 234 --NAIWDRYISSN 244 + I+ + S N Sbjct: 239 DGSCIYRQTDSVN 251 >gi|294670031|ref|ZP_06734988.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308152|gb|EFE49395.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 244 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 107/246 (43%), Gaps = 19/246 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE- 58 M R+ R+I+ D ETTGL + + DR++E +E+ T +++ P+ R E Sbjct: 1 MARE---RQIILDTETTGLYADRGDRMLEFAGIEMKKRQLTMNNLHLYIHPD-RDIPEEA 56 Query: 59 -ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 A+ + ++ P F + + DF I HNA+FDVGF+N E R+ Sbjct: 57 AAVHGITLEQLEERNAPKFEQVGRQIADFLRGAE--LIIHNARFDVGFLNMEFARMGLPS 114 Query: 118 LD--PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ I DTL++AR K P + L++LC R + S R HGAL+D LL++VY+ M Sbjct: 115 IEELDCEITDTLAMAREKFPGQKASLDALCSRLDVDRSKRVLHGALIDCELLAEVYLAMT 174 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK-- 233 F E+ + R EE H + + L K Sbjct: 175 REQ----FDLVGAEETAAAAQSADTGIAVQTAGGGLRILRADAEETAAHLEYLAELDKAS 230 Query: 234 --NAIW 237 +W Sbjct: 231 GGQCLW 236 >gi|32490818|ref|NP_871072.1| hypothetical protein WGLp069 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166024|dbj|BAC24215.1| dnaQ [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 246 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 80/241 (33%), Positives = 119/241 (49%), Gaps = 11/241 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ N R+IV D ETTG++ RIIEIGA+E+++ T R F +L P+ R Sbjct: 1 MKINTERQIVLDTETTGMNKNGPHYYGHRIIEIGAIEMINRRLTGRCFHTYLKPD-RLVE 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 EA K+HGI+DEFL +P+F I +F +F +L N + Sbjct: 60 IEAFKIHGISDEFLFFQPTFEEIMEKFINFIKGSELIIHNSVFDIGFINNEIQLCNKNLN 119 Query: 117 PLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ +IDTL +AR P RN+L++L RYGI + R HGALLD+ +LS+VY+ M Sbjct: 120 NINYYCSVIDTLKLARNIFPGKRNNLDALSDRYGIDTTKRILHGALLDAEILSNVYLLMT 179 Query: 176 VGGSQINFG----FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 G INF + N K KP+ +EE+ EH K ++++ Sbjct: 180 GGQIPINFSKKKNNNFINKKIKNNFNNFKKNKKYNKIIKPIVIYANEEEIHEHKKFMKSI 239 Query: 232 G 232 Sbjct: 240 N 240 >gi|307248305|ref|ZP_07530330.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307263945|ref|ZP_07545548.1| hypothetical protein appser13_13530 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306855175|gb|EFM87353.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306870707|gb|EFN02448.1| hypothetical protein appser13_13530 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 239 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 11/224 (4%) Query: 23 NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSE 82 IIEIGAVE+++ T RTF V++ P R+ EA+K+HGIT+EFL+DKP F+ + E Sbjct: 10 GHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVDEEAIKVHGITNEFLQDKPVFAEVADE 68 Query: 83 FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRIIDTLSIARRKHPSSRN 139 F +F I HNA FDV F++ E + P + D+L++AR+ +P RN Sbjct: 69 FIEFIKGAE--LIIHNAPFDVAFMDQEFSYLENPPPKTAEMCSVTDSLAVARKMYPGKRN 126 Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT 199 +L++LC R GI S R HGALLD+ +L+DV++ M G + G + Sbjct: 127 NLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLAL-LGEEDATATHENVADLG 185 Query: 200 VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239 + I+ + + +++EE H++ ++ + K N IW R Sbjct: 186 LGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWMR 229 >gi|262368670|ref|ZP_06061999.1| ribonuclease HI [Acinetobacter johnsonii SH046] gi|262316348|gb|EEY97386.1| ribonuclease HI [Acinetobacter johnsonii SH046] Length = 474 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 12/225 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P E + HGI+ Sbjct: 247 RQLILDTETTGFYYQDGDRIIEVGAIEMVNRKLTGSSIHIYINPKKPVGDSENV--HGIS 304 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IID 125 D+FLKDKP + I + + AHNA FD+ F++ E +R L + D Sbjct: 305 DDFLKDKPLYQEIADTLFAYLKGAEII--AHNASFDMNFLDMEFKRAGFVALSEVCAVTD 362 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +L+DVY+ M G + Sbjct: 363 TLAMAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILADVYLAMTGGQVSFDMDA 422 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 ++ ++ + ++ +I L + + EEL+ H+ ++ Sbjct: 423 LSHSEQQNGQSQRQALDIELA------VIQPSAEELEAHETWVKQ 461 >gi|299771048|ref|YP_003733074.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. DR1] gi|298701136|gb|ADI91701.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. DR1] Length = 458 Score = 110 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P E + HGI+ Sbjct: 231 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQKPVGDSENI--HGIS 288 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125 D FLKDKP ++ I +D+ AHNA FD+ F++ E +R L + D Sbjct: 289 DNFLKDKPLYAEIADTLFDYLKGAEII--AHNATFDMNFLDMEFRRAGLPALSEVCEVTD 346 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G + Sbjct: 347 TLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDIDA 406 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 + + KT I ++EEL+ H+ ++ K Sbjct: 407 LSQSENSQNTTNKTRIQID------LPVIYPSEEELNTHETWVKEFEKK 449 >gi|307252915|ref|ZP_07534803.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859553|gb|EFM91578.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 239 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 11/224 (4%) Query: 23 NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSE 82 IIEIGAVE+++ T RTF V++ P R+ EA+K+HGIT+EFL+DKP F+ + E Sbjct: 10 GHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVEEEAIKVHGITNEFLQDKPVFAEVADE 68 Query: 83 FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRIIDTLSIARRKHPSSRN 139 F +F I HNA FDV F++ E + P + D+L++AR+ +P RN Sbjct: 69 FIEFIKGAE--LIIHNAPFDVAFMDQEFSYLENPPPKTAEMCSVTDSLAVARKMYPGKRN 126 Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT 199 +L++LC R GI S R HGALLD+ +L+DV++ M G + G + Sbjct: 127 NLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLAL-LGEEDATATHENVADLG 185 Query: 200 VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239 + I+ + + +++EE H++ ++ + K N IW R Sbjct: 186 LGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWMR 229 >gi|262279776|ref|ZP_06057561.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202] gi|262260127|gb|EEY78860.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202] Length = 458 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 119/229 (51%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P E + HGI+ Sbjct: 231 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQKPVGDSENI--HGIS 288 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125 D FLKDKP ++ I +D+ AHNA FD+ F++ E +R L + D Sbjct: 289 DNFLKDKPLYADIADTLFDYLKGAEII--AHNATFDMNFLDMEFRRAGLPALSEVCEVTD 346 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G + Sbjct: 347 TLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDIDA 406 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 + + KT I + ++EEL+ H+ ++ K Sbjct: 407 LSQSENSLNTANKTRVQI------ELPVILPSEEELNTHETWVKEFEKK 449 >gi|196003864|ref|XP_002111799.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens] gi|190585698|gb|EDV25766.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens] Length = 289 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 70/204 (34%), Positives = 105/204 (51%), Gaps = 5/204 (2%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++V D ETTGL + RIIEIG +EL+D+ T+RTFQ ++ P S A ++H ++ Sbjct: 14 REVVLDTETTGLSVRTGHRIIEIGCLELIDHQPTSRTFQCYINPK-FPVSERAFEVHHLS 72 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++FL+ P+F I +F DF E I HN FD+ FIN E Q++N + R+IDT Sbjct: 73 NKFLEGFPTFDGIVQDFRDFIQE--DTLIIHNGHFDIKFINNEFQKLNIPEISFERVIDT 130 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL-LDSHLLSDVYIKMMVGGSQINFGF 185 + +AR+ +P L+SLC R+ I S RS D LL VY K++ + Sbjct: 131 MLMARKLYPRQPASLDSLCDRFNIDKSSRSLGHGALTDVKLLQLVYAKLLKDQDALGLNV 190 Query: 186 KTNEDRFFKEEKKTVPNISLLKRD 209 + ++S R Sbjct: 191 INQSATQTSKSIVNKTDMSKQHRP 214 >gi|260550748|ref|ZP_05824956.1| ribonuclease HI [Acinetobacter sp. RUH2624] gi|260406254|gb|EEW99738.1| ribonuclease HI [Acinetobacter sp. RUH2624] Length = 459 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 124/229 (54%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P K E+ +HGI+ Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGESENIHGIS 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125 D+FLKDKP ++ I +++ AHNA FD+ F++ E +R+ L + D Sbjct: 290 DDFLKDKPVYADIADTLFEYLKGAEII--AHNATFDMNFLDMEFRRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 405 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++K T I + + EEL+ H+ ++ K Sbjct: 406 DALSQSESDQQKTTKARIQID----LPVIYPSDEELNIHETWVKEFEKK 450 >gi|262375943|ref|ZP_06069174.1| ribonuclease HI [Acinetobacter lwoffii SH145] gi|262309037|gb|EEY90169.1| ribonuclease HI [Acinetobacter lwoffii SH145] Length = 458 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 123/229 (53%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P ++ +HGIT Sbjct: 231 RQLILDTETTGFYYQDGDRIIEVGALEMINRKLTGSSIHIYINPKTPVGD--SVNVHGIT 288 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125 DEFL+DKP F I +D+ + AHNA FD+ F++ E +R L + D Sbjct: 289 DEFLQDKPLFEEISQVLFDYLHGAEII--AHNATFDMNFLDMEFKRAGFKALSEVCDVTD 346 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M Q++F Sbjct: 347 TLALAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILSDVYLAMTG--GQVSFDI 404 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 + + + + + + +++EL EH+ ++ + Sbjct: 405 DALSQSEDQNSRSGMARVEI----ELPVILPSEQELQEHENWVKQFEEK 449 >gi|255320390|ref|ZP_05361574.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens SK82] gi|262379328|ref|ZP_06072484.1| ribonuclease HI [Acinetobacter radioresistens SH164] gi|255302585|gb|EET81818.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens SK82] gi|262298785|gb|EEY86698.1| ribonuclease HI [Acinetobacter radioresistens SH164] Length = 455 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 120/224 (53%), Gaps = 12/224 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P ++ +HGIT Sbjct: 228 RQLILDTETTGFYFQDGDRIIEVGAIEMVNRKLTGSSIHIYINPEKPVGD--SVDIHGIT 285 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125 DEFL+DKP ++ I +++ AHNA FD+ F++ E +R L + D Sbjct: 286 DEFLQDKPRYAEIAEVLFNYLKGAEII--AHNASFDMNFLDMEFKRAGFPALSEVCEVTD 343 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G + Sbjct: 344 TLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDA 403 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 + + + + V N+ + EEL H++ +Q Sbjct: 404 LSQSEISQSQASRQVINVD------LPVIVPSPEELAAHEEWVQ 441 >gi|260557363|ref|ZP_05829578.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606] gi|260408989|gb|EEX02292.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606] Length = 459 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P ++++HGIT Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVQVHGIT 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125 DEFL DKP ++ I +++ AHNA FD+ F++ E +R+ L + D Sbjct: 290 DEFLVDKPKYAEIADTLFEYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 405 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++K T + + + + EEL+ H+ ++ K Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450 >gi|254707409|ref|ZP_05169237.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M163/99/10] gi|261314895|ref|ZP_05954092.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M163/99/10] gi|261303921|gb|EEY07418.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M163/99/10] Length = 201 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 86/204 (42%), Positives = 125/204 (61%), Gaps = 4/204 (1%) Query: 40 TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 T RTF F+ P GR+ P+AL +HGI++E L DKP F+ I EF +F + +AHNA Sbjct: 1 TGRTFHKFINPQGRQVHPDALAVHGISNEQLLDKPVFAEILDEFLEFIDGAR--LVAHNA 58 Query: 100 KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 FD+GFINAEL R+++ + I+DTL++ARRKHP N L++LCKRYGI SHR+ HG Sbjct: 59 MFDLGFINAELARLDQAEITSEHIVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHG 118 Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITK 218 ALLD+ +L++VYI+++ G Q G + + + L R +PL RI+ Sbjct: 119 ALLDAQILAEVYIELIG-GKQTALGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISD 177 Query: 219 EELDEHDKTIQTLGKNAIWDRYIS 242 E H ++ +G A+W +Y+S Sbjct: 178 AERAAHAALVEKMGDKAVWKKYLS 201 >gi|169796679|ref|YP_001714472.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter baumannii AYE] gi|184157414|ref|YP_001845753.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii ACICU] gi|213156097|ref|YP_002318517.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii AB0057] gi|215484167|ref|YP_002326392.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB307-0294] gi|301344775|ref|ZP_07225516.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB056] gi|301510946|ref|ZP_07236183.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB058] gi|169149606|emb|CAM87496.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III ,epsilon subunit, 3-5 exonucleolytic proofreading function] [Acinetobacter baumannii AYE] gi|183209008|gb|ACC56406.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU] gi|213055257|gb|ACJ40159.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii AB0057] gi|213985858|gb|ACJ56157.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB307-0294] gi|322507294|gb|ADX02748.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 1656-2] gi|323517313|gb|ADX91694.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii TCDC-AB0715] Length = 459 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P ++++HGIT Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVQVHGIT 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125 DEFL DKP ++ I +++ AHNA FD+ F++ E +R+ L + D Sbjct: 290 DEFLVDKPKYAEIADTLFEYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 405 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++K T + + + + EEL+ H+ ++ K Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450 >gi|239503330|ref|ZP_04662640.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB900] Length = 459 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P ++++HGIT Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVQVHGIT 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125 DEFL DKP ++ I +++ AHNA FD+ F++ E +R+ L + D Sbjct: 290 DEFLVDKPKYAEIADTLFEYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 405 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++K T + + + + EEL+ H+ ++ K Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450 >gi|169633080|ref|YP_001706816.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter baumannii SDF] gi|169151872|emb|CAP00707.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III ,epsilon subunit, 3-5 exonucleolytic proofreading function] [Acinetobacter baumannii] Length = 459 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P ++++HGIT Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVQVHGIT 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125 DEFL DKP ++ I +++ AHNA FD+ F++ E +R+ L + D Sbjct: 290 DEFLVDKPKYAEIADTLFEYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 405 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++K T + + + + EEL+ H+ ++ K Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450 >gi|126641104|ref|YP_001084088.1| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978] Length = 459 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P ++++HGIT Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVQVHGIT 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125 DEFL DKP ++ I +++ AHNA FD+ F++ E +R+ L + D Sbjct: 290 DEFLVDKPKYAEIADTLFEYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 405 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++K T + + + + EEL+ H+ ++ K Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450 >gi|332852350|ref|ZP_08434135.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6013150] gi|332870148|ref|ZP_08439060.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6013113] gi|332875093|ref|ZP_08442929.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6014059] gi|332729293|gb|EGJ60634.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6013150] gi|332732415|gb|EGJ63671.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6013113] gi|332736710|gb|EGJ67701.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6014059] Length = 497 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P ++++HGIT Sbjct: 270 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVQVHGIT 327 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFL DKP ++ I +++ AHNA FD+ F++ E +R+ L + Sbjct: 328 DEFLVDKPKYAEIADTLFEYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 385 Query: 127 LSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + HP +N L++L +RY I R+ HGALLD+ +LSDVY+ M Q++F Sbjct: 386 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 443 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++K T + + + + EEL+ H+ ++ K Sbjct: 444 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 488 >gi|193076772|gb|ABO11486.2| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978] Length = 497 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P ++++HGIT Sbjct: 270 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVQVHGIT 327 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFL DKP ++ I +++ AHNA FD+ F++ E +R+ L + Sbjct: 328 DEFLVDKPKYAEIADTLFEYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 385 Query: 127 LSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + HP +N L++L +RY I R+ HGALLD+ +LSDVY+ M Q++F Sbjct: 386 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 443 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++K T + + + + EEL+ H+ ++ K Sbjct: 444 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 488 >gi|118602424|ref|YP_903639.1| DNA polymerase III, epsilon subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567363|gb|ABL02168.1| DNA polymerase III, epsilon subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 222 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 8/226 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGI 65 R IV D ETTG++ + RIIEIG E++D T + ++ P+ ++++HGI Sbjct: 3 RLIVLDTETTGIEPSEGHRIIEIGCTEIVDRQITENNEYHEYIQPSRNVGD--SVRIHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD+FL +KP F +I F + +L I++ D IID Sbjct: 61 TDKFLTNKPKFKAIVKTFLTYIEGATLIIHNAPFDLGFLNHELKLIGIDERIEDKCNIID 120 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L +++++ P + ++L++LC+R+ I S R+ HGALLD+ +L+ VY+ M G S Sbjct: 121 SLELSKQQRPGTLHNLDALCRRFEINSSARTVHGALLDAKILAQVYLAMTGGQST----L 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 NE ++ K K+EL H + + Sbjct: 177 FNNEQTINEQANTNNIIRVERAIGKIKVVYANKQELAAHASYFEKI 222 >gi|301596826|ref|ZP_07241834.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB059] Length = 438 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P ++++HGIT Sbjct: 211 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVQVHGIT 268 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFL DKP ++ I +++ AHNA FD+ F++ E +R+ L + Sbjct: 269 DEFLVDKPKYAEIADTLFEYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 326 Query: 127 LSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + HP +N L++L +RY I R+ HGALLD+ +LSDVY+ M Q++F Sbjct: 327 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 384 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++K T + + + + EEL+ H+ ++ K Sbjct: 385 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 429 >gi|50084331|ref|YP_045841.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. ADP1] gi|49530307|emb|CAG68019.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III ,epsilon subunit, 3-5 exonucleolytic proofreading function] [Acinetobacter sp. ADP1] Length = 450 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 121/225 (53%), Gaps = 12/225 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P ++ +HGIT Sbjct: 223 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVDVHGIT 280 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125 DEFL DKP ++ I +++ AHNA FD+ F++ E +R L + D Sbjct: 281 DEFLLDKPKYAEIAEPLFEYLKGAEII--AHNASFDMNFLDMEFKRAGLPTLSEVCEVTD 338 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M Q++F Sbjct: 339 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTG--GQVSFDM 396 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 R + K I R + EL++H++ +++ Sbjct: 397 DALSQREQNQRKGQRARIEAD----LPVIRPSANELEKHNEWVKS 437 >gi|319941413|ref|ZP_08015741.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B] gi|319805033|gb|EFW01863.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B] Length = 246 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 82/241 (34%), Positives = 126/241 (52%), Gaps = 23/241 (9%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSK---TNRTFQVFLCPNGRKNSPEALKLH 63 R I D ETTGLD++ DRIIEIG V + Q+F+ P R+ EA+ +H Sbjct: 6 RLITLDTETTGLDAQNGDRIIEIGCVAIEGRMMRSTDEHHLQIFVNPE-REVPEEAVAIH 64 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSR 122 GIT E+L+DKP F+ I +F DF + + HNA FD GF++ EL R + + D + Sbjct: 65 GITTEYLQDKPKFAEIADKFIDFVKG--STLVIHNAAFDTGFLDMELGRCGRGKISDYCQ 122 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDT+ +A++ P L+SLC+ Y I S+R+ HGALLD+ LL++VY+ + G + Sbjct: 123 VIDTVKLAKKLLPGRAVSLDSLCRYYEIDNSNRTLHGALLDAELLAEVYLSLSRGQDTLT 182 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 E+ +P + D + + + EEL EH++ + K W Sbjct: 183 L---------VNEDIDNLPPMPAF--DASIVIKASPEELAEHERILDIAEKKAKATPAWR 231 Query: 239 R 239 + Sbjct: 232 K 232 >gi|319779077|ref|YP_004129990.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9] gi|317109101|gb|ADU91847.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9] Length = 239 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 14/236 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL K R+IE+G E++D T Q++ P R+ EALK+HGI Sbjct: 1 MRQICLDTETTGLSWKDGHRVIELGCCEIIDGLLTGNNLQIYFNPE-REVDEEALKVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++EFL DKP FS + ++ + + HNA+FD+GF+N EL K L+ Sbjct: 60 SNEFLSDKPLFSDKADKIIEYLKDAQ--LVIHNAEFDMGFLNYELSLCGKPKLETFIHNP 117 Query: 126 TLSIARRKHPSSRND--------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + + L + R HGALLD+ +L+ V+IK+ G Sbjct: 118 VIDTRELARENGFSSAVITLNKLYKDLVDESYKQNTDRELHGALLDAVMLAKVFIKLNSG 177 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 ++I T+ ++ L + + ++EE+ H+ I TL K Sbjct: 178 QNEIFLE--TSARSEASDDLGFSSQNIDLSKLNLKLIKASEEEIAAHNDYIATLSK 231 >gi|226952576|ref|ZP_03823040.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. ATCC 27244] gi|226836656|gb|EEH69039.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. ATCC 27244] Length = 452 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P ++ +HGIT Sbjct: 225 RQLILDTETTGFYYQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVDVHGIT 282 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFL+DKP ++ I + + AHNA FD+ F++ E +R+ L + Sbjct: 283 DEFLQDKPKYAEIADALFAYLKGAEII--AHNATFDMNFLDMEFKRVGLPLLSEVCEVTD 340 Query: 127 LSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + HP +N L++L +RY I R+ HGALLD+ +L+DVY+ M Q++F Sbjct: 341 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTG--GQVSFDI 398 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 + K T + + R ++ EL+EH+ ++ + Sbjct: 399 DALSQHEQNQNKTTRQRVQID----LAVIRPSEHELNEHETWVKQFEEK 443 >gi|145579465|pdb|2GUI|A Chain A, Structure And Function Of Cyclized Versions Of The Proofread Exonuclease Subunit Of E. Coli Dna Polymerase Iii Length = 194 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 74/182 (40%), Positives = 110/182 (60%), Gaps = 11/182 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QI 181 + Sbjct: 187 SM 188 >gi|257454857|ref|ZP_05620108.1| bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit [Enhydrobacter aerosaccus SK60] gi|257447790|gb|EEV22782.1| bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit [Enhydrobacter aerosaccus SK60] Length = 595 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG +++ DRIIE+G VE+++ T V++ P + E +++HGI Sbjct: 366 RQLILDTETTGFEAQNGDRIIEVGIVEMINRRFTGEKLHVYINPK-IEMGEEVIRVHGIH 424 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125 + FL D P F + +DF IAHNA FD+ F+ AE R+ ++ + + D Sbjct: 425 NAFLNDMPVFEQVGEAIYDFLQGAE--LIAHNAGFDMSFLQAEFARLGLPDINQTVTVTD 482 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L+IA+R RN L++L KR + R+ HGALLD+ +L++VY+ M G + Sbjct: 483 SLAIAKRMFAGQRNTLDALVKRLNVGKQDRTFHGALLDAEILAEVYLAMTGGQVALAIDD 542 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 + E + F ++ E H + + L N Sbjct: 543 EVGGGVGGATEHQRFSTTI------KRFLASSEAE-QAHLEWLNALKNN 584 >gi|325121399|gb|ADY80922.1| bifunctional protein dnaQ [Acinetobacter calcoaceticus PHEA-2] Length = 459 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P E + HGI+ Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQKPVGDSENI--HGIS 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125 D+FLKDKP ++ I +D+ AHNA FD+ F++ E +R+ L + D Sbjct: 290 DDFLKDKPLYADIADTLFDYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +L+DVY+ M G + Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGGQVSFDIDA 407 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 + + + ++ I + EEL+ H+ ++ + Sbjct: 408 LSQSENSQQTTNRSRVQID------LPVIYPSDEELNTHETWVKEYEEK 450 >gi|24987377|pdb|1J53|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 8.5 gi|24987378|pdb|1J54|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 5.8 gi|119390109|pdb|2IDO|A Chain A, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading Complex gi|119390111|pdb|2IDO|C Chain C, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading Complex Length = 186 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 74/182 (40%), Positives = 110/182 (60%), Gaps = 11/182 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QI 181 + Sbjct: 184 SM 185 >gi|262372107|ref|ZP_06065386.1| ribonuclease HI [Acinetobacter junii SH205] gi|262312132|gb|EEY93217.1| ribonuclease HI [Acinetobacter junii SH205] Length = 448 Score = 105 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + NDRIIE+GA+E+++ T + +++ P ++ +HGIT Sbjct: 221 RQLILDTETTGFYYQDNDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVDVHGIT 278 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFL DKP ++ I ++F AHNA FD+ F++ E +R L + Sbjct: 279 DEFLADKPKYAEIADVLFEFLKGAEII--AHNATFDMNFLDMEFKRAGLPALSEVCEVTD 336 Query: 127 LSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + HP +N L++L +RY I R+ HGALLD+ +L+DVY+ M Q++F Sbjct: 337 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTG--GQVSFDM 394 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++ K T + + T +EL +H+ ++ + Sbjct: 395 DALSQTEQQQNKTTRQRVQID----LPIIYPTDDELQQHETWVKQFEEK 439 >gi|293608835|ref|ZP_06691138.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024] gi|292829408|gb|EFF87770.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024] Length = 459 Score = 105 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P E + HGI+ Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQKPVGDSENI--HGIS 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125 D+FLKDKP ++ I +D+ AHNA FD+ F++ E +R+ L + D Sbjct: 290 DDFLKDKPLYADIADTLFDYLKGAEII--AHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +L+DVY+ M G + Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGGQVSFDIDA 407 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 + + + ++ I + EEL+ H+ ++ + Sbjct: 408 LSQSENSQQTTNRSRVQID------LPVIYPSDEELNIHETWVKEYEEK 450 >gi|189183653|ref|YP_001937438.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str. Ikeda] gi|189180424|dbj|BAG40204.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str. Ikeda] Length = 222 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 123/228 (53%), Gaps = 12/228 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 RKIV D ET+GLD K RIIEIGAVEL D ++ TF ++ P R S EA K+HG+ Sbjct: 3 RKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPE-RDISKEAYKVHGL 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL DKP F I EF F + HNA FD+ F+N+EL RI K + + +ID Sbjct: 62 SRDFLSDKPKFREIVDEFLQFIDGAQLIM--HNANFDMQFLNSELFRIRKSAIPNTCVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR++ P R +L++LC ++ I S R HGAL D+ LL+ VY +MM G + Sbjct: 120 TLTLARKRFPKERVNLDALCYKFRIDTSDRHLHGALKDAKLLALVYGRMMRGMQVVLLDD 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + T N + T +E+ +H + + + K Sbjct: 180 TKHNKEIIISNCATNIN-------NTVVVEPTCDEIIQHQQLLSKIHK 220 >gi|257483794|ref|ZP_05637835.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 178 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 72/171 (42%), Positives = 96/171 (56%), Gaps = 4/171 (2%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 +EFL KP F+ + EF++F A + F + D I+ Sbjct: 68 NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSIL 127 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT 178 >gi|167010822|ref|ZP_02275753.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica FSC200] Length = 230 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 80/239 (33%), Positives = 120/239 (50%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYK-VEAGALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPLDPS 121 +EFL DKP F E +F HNA FDV FIN + + + + Sbjct: 62 NEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G + + Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNL 179 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237 + + + N+ + + ++ H + L ++A W Sbjct: 180 SLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISAHHSYLSNLLKLEEDAKW 230 >gi|332978349|gb|EGK15074.1| DNA polymerase III, epsilon subunit [Psychrobacter sp. 1501(2011)] Length = 577 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 14/229 (6%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTGLD+ K DR+IE+G +EL++ T V++ P R E +++HGIT Sbjct: 306 RQLIMDTETTGLDALKGDRVIEVGIIELVNRKFTGEKLHVYINPE-RGMDDEVIRVHGIT 364 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 + FL DKP F + ++F IAHNA FD+ F++ E R+ + + D Sbjct: 365 EAFLADKPKFKEVAKPLYEFMLGAE--LIAHNAPFDMSFLSMEFDRVGLSDFAEKVTVTD 422 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L +A++++P +N L++L +R + R+ HGALLDS +L++VY+ M G + Sbjct: 423 SLVMAKQQYPGQKNTLDALVRRLNVGKMDRTFHGALLDSEILAEVYLAMTGGQVALAIDE 482 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 T + + +LK + P LD H + L K Sbjct: 483 DTQSEGEGSHADFSHLASQILKANTP---------LDNHVSWVSKLLKK 522 >gi|289809670|ref|ZP_06540299.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 187 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 74/181 (40%), Positives = 108/181 (59%), Gaps = 11/181 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 Q 180 Sbjct: 187 S 187 >gi|187931822|ref|YP_001891807.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187712731|gb|ACD31028.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 230 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 81/239 (33%), Positives = 120/239 (50%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNY-EVEAGALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121 +EFL DKP F E +F HNA FDV FIN E + + + Sbjct: 62 NEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWEFSLLKNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G + + Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNL 179 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237 + + + N+ + + ++ H + L ++A W Sbjct: 180 SLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISAHHSYLSNLLKLEEDAKW 230 >gi|89256347|ref|YP_513709.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica LVS] gi|115314792|ref|YP_763515.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|254367683|ref|ZP_04983704.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica 257] gi|254369321|ref|ZP_04985333.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp. holarctica FSC022] gi|89144178|emb|CAJ79442.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica LVS] gi|115129691|gb|ABI82878.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|134253494|gb|EBA52588.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica 257] gi|157122271|gb|EDO66411.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp. holarctica FSC022] Length = 238 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 122/242 (50%), Gaps = 21/242 (8%) Query: 6 KM-RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +M R++ D ETTG D K +RIIE GAVE++D T + PN + AL +H Sbjct: 8 RMSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYK-VEAGALAIH 66 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPL 118 G+T+EFL DKP F E +F HNA FDV FIN + + Sbjct: 67 GLTNEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELSLLKNNKYGTLEQ 124 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + ++I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Sbjct: 125 NVAKIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQ 184 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNA 235 + ++ + + N+ + + ++ H + L ++A Sbjct: 185 TNLSLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISAHHSYLSNLLKLEEDA 236 Query: 236 IW 237 W Sbjct: 237 KW 238 >gi|54114497|gb|AAV29882.1| NT02FT1179 [synthetic construct] Length = 230 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 117/232 (50%), Gaps = 17/232 (7%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNY-EVEAGALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPLDPS 121 +EFL DKP F E +F HNA FDV FIN + + + + Sbjct: 62 NEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G + + Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNL 179 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + + + N+ + + ++ H + L K Sbjct: 180 SLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISAHHSYLSNLLK 223 >gi|56707679|ref|YP_169575.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110670150|ref|YP_666707.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis FSC198] gi|134301975|ref|YP_001121944.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|224456748|ref|ZP_03665221.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254370187|ref|ZP_04986193.1| DNA polymerase III [Francisella tularensis subsp. tularensis FSC033] gi|254874491|ref|ZP_05247201.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604171|emb|CAG45181.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110320483|emb|CAL08564.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis FSC198] gi|134049752|gb|ABO46823.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|151568431|gb|EDN34085.1| DNA polymerase III [Francisella tularensis subsp. tularensis FSC033] gi|254840490|gb|EET18926.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158843|gb|ADA78234.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis NE061598] Length = 230 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 80/239 (33%), Positives = 120/239 (50%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNY-EVEAGALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPLDPS 121 +EFL DKP F E +F HNA FDV FIN + + + + Sbjct: 62 NEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G + + Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNL 179 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237 + + + N+ + + ++ H + L ++A W Sbjct: 180 SLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISAHHSYLSNLLKLEEDAKW 230 >gi|294649872|ref|ZP_06727272.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter haemolyticus ATCC 19194] gi|292824246|gb|EFF83049.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter haemolyticus ATCC 19194] Length = 452 Score = 103 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P ++ +HGIT Sbjct: 225 RQLILDTETTGFYYQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD--SVDVHGIT 282 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125 DEFL+DKP ++ I + + AHNA FD+ F++ E +R+ L + D Sbjct: 283 DEFLQDKPKYAEIADALFAYLKGAEII--AHNATFDMNFLDMEFKRVGLPLLSEVCEVTD 340 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +L+DVY+ M Q++F Sbjct: 341 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTG--GQVSFDI 398 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 + K T + + ++ EL+EH+ ++ + Sbjct: 399 DALSQHEQNQNKTTRQRVQID----LAVILPSEHELNEHETWVKQFEEK 443 >gi|169656602|ref|YP_001428489.2| DNA polymerase III, subunit epsilon [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954177|ref|ZP_06558798.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica URFT1] gi|295312420|ref|ZP_06803198.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica URFT1] gi|164551670|gb|ABU61533.2| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica FTNF002-00] Length = 238 Score = 103 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 80/235 (34%), Positives = 119/235 (50%), Gaps = 18/235 (7%) Query: 6 KM-RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +M R++ D ETTG D K +RIIE GAVE++D T + PN + AL +H Sbjct: 8 RMSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYK-VEAGALAIH 66 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPL 118 G+T+EFL DKP F E +F HNA FDV FIN + + Sbjct: 67 GLTNEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELSLLKNNKYGTLEQ 124 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + ++I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Sbjct: 125 NVAKIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQ 184 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + ++ + + N+ + + ++ H + L K Sbjct: 185 TNLSLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISAHHSYLSNLLK 231 >gi|320332653|ref|YP_004169364.1| DNA polymerase III subunit epsilon [Deinococcus maricopensis DSM 21211] gi|319753942|gb|ADV65699.1| DNA polymerase III, epsilon subunit [Deinococcus maricopensis DSM 21211] Length = 174 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 4/175 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M +VFD+ETTGL + D I+EIGA+ + + + TF + P R ++HGI Sbjct: 1 MEYVVFDLETTGLSPERDAIVEIGAIRIRNGEVLEDDTFHTLVNPE-RDIPWYVSRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + P + F +AHNA FD GFI A R + I Sbjct: 60 RNAHVASAPRITEALPAFLQ--YAGTTPVVAHNAAFDTGFIRAAAARQGLEWRPQREICT 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R + L++L +R G+ R H A D+ L + + ++ + Sbjct: 118 LQLSRRAFPREKSHKLDALAQRLGLLQEARGLHSAHADARLTAHAFAHLLRHLGE 172 >gi|332184121|gb|AEE26375.1| DNA polymerase III epsilon subunit [Francisella cf. novicida 3523] Length = 230 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 86/239 (35%), Positives = 123/239 (51%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRVTGNTLHFYCNPNY-EVEAGALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPLDPS 121 +EFL DKP F E DF HNA FDV FIN + + + + Sbjct: 62 NEFLADKPLFEDKVDEMIDFLKGAEVI--IHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M Q Sbjct: 120 KIVDSLELARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTG--GQT 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237 N +T + + ++L K D + ++ H + L ++A W Sbjct: 178 NLSLQTAKTISKNSIDIDINKLNLRKADDSI------SDISVHHNYLSNLLKLEEDAKW 230 >gi|254374374|ref|ZP_04989856.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548] gi|151572094|gb|EDN37748.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548] Length = 238 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 122/242 (50%), Gaps = 21/242 (8%) Query: 6 KM-RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 KM R++ D ETTG D K +RIIE GAVE++D T T + PN + AL +H Sbjct: 8 KMSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNTLHFYCNPNY-EVEAGALAIH 66 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPL 118 G+T+EFL DKP F E +F HNA FDV FIN + Sbjct: 67 GLTNEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELGLLRNNKYGTLEQ 124 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + +RI+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Sbjct: 125 NVARIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQ 184 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNA 235 + ++ + + N+ + + ++ H + L ++A Sbjct: 185 TNLSLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISVHHSYLSNLLKLEEDA 236 Query: 236 IW 237 W Sbjct: 237 KW 238 >gi|148284671|ref|YP_001248761.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str. Boryong] gi|146740110|emb|CAM80283.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str. Boryong] Length = 222 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 123/228 (53%), Gaps = 12/228 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 RKIV D ET+GLD K RIIEIGAVEL D ++ TF ++ P R S EA K+HG+ Sbjct: 3 RKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPE-RDISKEAYKVHGL 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL DKP F I EF F + HNA FD+ F+N+EL RI K + + +ID Sbjct: 62 SRDFLSDKPKFREIVDEFLQFIDRAQLIM--HNANFDMQFLNSELFRIRKSAIPNTCVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR++ P R +L++LC ++ I S R HGAL D+ LL+ VY +MM G + Sbjct: 120 TLTLARKRFPKERVNLDALCYKFRIDTSDRHLHGALKDAKLLALVYGRMMHGMQVVLLDD 179 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + T N + T +E+ +H + + + K Sbjct: 180 TKHNKEIIISNCATNIN-------NTVVVEPTCDEIIQHQQLLSKIHK 220 >gi|62261930|gb|AAX78030.1| unknown protein [synthetic construct] Length = 265 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 80/239 (33%), Positives = 120/239 (50%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 29 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNY-EVEAGALAIHGLT 87 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPLDPS 121 +EFL DKP F E +F HNA FDV FIN + + + + Sbjct: 88 NEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELSLLKNNKYGTLEQNVA 145 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G + + Sbjct: 146 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNL 205 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237 + + + N+ + + ++ H + L ++A W Sbjct: 206 SLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISAHHSYLSNLLKLEEDAKW 256 >gi|254372921|ref|ZP_04988410.1| hypothetical protein FTCG_00492 [Francisella tularensis subsp. novicida GA99-3549] gi|151570648|gb|EDN36302.1| hypothetical protein FTCG_00492 [Francisella novicida GA99-3549] gi|332678259|gb|AEE87388.1| DNA polymerase III epsilon subunit [Francisella cf. novicida Fx1] Length = 230 Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 82/239 (34%), Positives = 120/239 (50%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNTLHFYCNPNY-EVEAGALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPLDPS 121 +EFL DKP F E +F HNA FDV FIN + + + Sbjct: 62 NEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELGLLRNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 RI+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G + + Sbjct: 120 RIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNL 179 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237 + + + N+ + + ++ H + L ++A W Sbjct: 180 SLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISVHHSYLSNLLKLEEDAKW 230 >gi|145641463|ref|ZP_01797041.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021] gi|145273754|gb|EDK13622.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.4-21] Length = 205 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 71/188 (37%), Positives = 100/188 (53%), Gaps = 8/188 (4%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N +N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNV 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 KTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMT 177 Query: 176 VGGSQINF 183 G + Sbjct: 178 GGKQIYSM 185 >gi|118497560|ref|YP_898610.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. novicida U112] gi|195536256|ref|ZP_03079263.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. novicida FTE] gi|118423466|gb|ABK89856.1| DNA polymerase III, epsilon subunit [Francisella novicida U112] gi|194372733|gb|EDX27444.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. novicida FTE] Length = 230 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 80/239 (33%), Positives = 120/239 (50%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNY-EVEAGALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPLDPS 121 +EFL DKP F E +F HNA FDV FIN + + + + Sbjct: 62 NEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G + + Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNL 179 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237 + + + N+ + + ++ H + L ++A W Sbjct: 180 SLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISVHHSYLSNLLKLEEDAKW 230 >gi|323143749|ref|ZP_08078417.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT 12066] gi|322416462|gb|EFY07128.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT 12066] Length = 309 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 16/228 (7%) Query: 8 RKIVFDIETTGLD----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 R++ D ETTG + RIIE+G VE+++ T R Q F+ P+ R EA ++H Sbjct: 5 RQVALDTETTGKSDDGTTGTHRIIEVGCVEIINRRLTGRQLQFFVNPD-RHIDEEATEVH 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITDE L DKP F+ + +E DF +L ++N+ D +I Sbjct: 64 GITDEMLADKPHFADVANELIDFIRGSELLIHNAKFDSAFLDKEWDLLKLNEHTKDMCKI 123 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DT+ +AR+ +P+++ +L++LC Y I S R+ HGALLD+ LL++VY+ M G S +F Sbjct: 124 VDTVELARKINPNNQANLDNLCSIYDIDNSRRTVHGALLDAQLLAEVYLAMTGGQSSFDF 183 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 G + E R K + + E D H + + Sbjct: 184 GEDSVNALSRHWE-----------RPKDIKLPLMHVETDRHAVHVAQM 220 >gi|71065393|ref|YP_264120.1| bifunctional ribonuclease HI/DNA polymerase III, epsilon subunit [Psychrobacter arcticus 273-4] gi|71038378|gb|AAZ18686.1| bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit [Psychrobacter arcticus 273-4] Length = 527 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 67/190 (35%), Positives = 106/190 (55%), Gaps = 5/190 (2%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTGLD K DRIIE+G VE++ T V++ P R E +++HGI+ Sbjct: 302 RQLIMDTETTGLDPLKGDRIIEVGIVEMIGRKFTGEKLHVYINPQ-RGMDEEVIRIHGIS 360 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIID 125 + FL DKP+F + +DF + AHNA FD+ F+N E + D + R+ D Sbjct: 361 EAFLTDKPTFDQVAQSLYDFMDGAEII--AHNASFDMNFLNMEFAKVGMHDFAERVRVTD 418 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L +A++++P +N L++L +R + R+ HGALLDS +L++VY+ M G + Sbjct: 419 SLVMAKQQYPGQKNTLDALVRRLDVGKQDRTFHGALLDSEILAEVYLTMTGGQVTLGIED 478 Query: 186 KTNEDRFFKE 195 T D Sbjct: 479 DTQADGGHTA 488 >gi|208779358|ref|ZP_03246704.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG] gi|208745158|gb|EDZ91456.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG] Length = 238 Score = 100 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 122/242 (50%), Gaps = 21/242 (8%) Query: 6 KM-RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +M R++ D ETTG D K +RIIE GAVE++D T + PN + AL +H Sbjct: 8 RMSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNY-EVEAGALAIH 66 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPL 118 G+T+EFL DKP F E +F HNA FDV FIN + + Sbjct: 67 GLTNEFLADKPLFEDKVDEMIEFLRGAEVI--IHNAAFDVPFINWELSLLKNNKYGTLEQ 124 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + ++I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Sbjct: 125 NVAKIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRAFHGALLDSELLADVYLAMTGGQ 184 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNA 235 + ++ + + N+ + + ++ H + L ++A Sbjct: 185 TNLSLQTAKTVSKNSIDIDVNKLNLRNAED--------SISDISVHHSYLSNLLKLEEDA 236 Query: 236 IW 237 W Sbjct: 237 KW 238 >gi|296113099|ref|YP_003627037.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4] gi|295920793|gb|ADG61144.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4] gi|326560092|gb|EGE10482.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 46P47B1] gi|326560475|gb|EGE10857.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 7169] gi|326561678|gb|EGE12015.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 103P14B1] gi|326564194|gb|EGE14430.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 12P80B1] gi|326565793|gb|EGE15955.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC1] gi|326570446|gb|EGE20486.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC8] gi|326571129|gb|EGE21153.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC7] gi|326573423|gb|EGE23391.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 101P30B1] gi|326575681|gb|EGE25604.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis CO72] gi|326577147|gb|EGE27041.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis O35E] Length = 432 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 116/233 (49%), Gaps = 19/233 (8%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + + DRI+E+G VEL+ T V++ P + +++HGI+ Sbjct: 212 RQLIMDTETTGFNEAGGDRIVEVGIVELVGRKFTGNILHVYINPE-KHMDDAVIQVHGIS 270 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 + F+ DKP F+ + + ++F AHNA FD+ F+N E R + ++ D Sbjct: 271 NAFVADKPKFAEVAQQIYEFMAGSEVI--AHNAAFDMKFLNMEFNRAGLSNFANSVKVTD 328 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A++ +P +N L++L KR G+ R+ HGALLDS +L++VY+ M G + Sbjct: 329 TLALAKQMYPGQKNSLDALVKRLGVGQKDRTFHGALLDSEILAEVYLAMTGGQIAMAIDD 388 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + ++S +++ +++ +A+W Sbjct: 389 DNTGGSNTRSTGSAFYDLSQYADS----LALSESDIEA----------DALWR 427 >gi|93005683|ref|YP_580120.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis K5] gi|92393361|gb|ABE74636.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis K5] Length = 532 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 64/190 (33%), Positives = 105/190 (55%), Gaps = 5/190 (2%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTGLD K DR+IE+G VE++ T V++ P R E +++HGI+ Sbjct: 307 RQLIMDTETTGLDPQKGDRVIEVGIVEMIGRKFTGEKLHVYINPQ-RGMDEEVIRIHGIS 365 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIID 125 + FL DKP+F + +DF + AHNA FD+ F+N E + D + ++ D Sbjct: 366 EAFLTDKPTFDQVAQSLYDFMDGAEII--AHNASFDMNFLNMEFAKVGMHDFAERVKVTD 423 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L +A++++P +N L++L +R + R+ HGALLDS +L++VY+ M G + Sbjct: 424 SLVMAKQQYPGQKNTLDALVRRLDVGKQDRTFHGALLDSEILAEVYLAMTGGQVTLGIED 483 Query: 186 KTNEDRFFKE 195 D Sbjct: 484 DAQADGGHTA 493 >gi|241668417|ref|ZP_04755995.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876950|ref|ZP_05249660.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842971|gb|EET21385.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 230 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 86/239 (35%), Positives = 123/239 (51%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRKVTGNNLHFYCNPNY-EVEAGALAVHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPLDPS 121 +EFL DKPSF + DF HNA FDV FIN + + + Sbjct: 62 NEFLADKPSFEENVDQMIDFLRGAEII--IHNAAFDVPFINWELGLLKNNKYGTLEQHVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M Q Sbjct: 120 KIVDSLELARKKHPLQKNNLDALCKRYHIRNDHRTFHGALLDSELLADVYLAMTG--GQT 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAIW 237 N +T ++ + L ++ + + EHDK + L ++A W Sbjct: 178 NLVLQTTKNASKDTIDIDFDKLKLRSANETIIN------ISEHDKYLCNILKLEESAKW 230 >gi|167627857|ref|YP_001678357.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597858|gb|ABZ87856.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 230 Score = 99.6 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 85/239 (35%), Positives = 122/239 (51%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRKVTGNNLHFYCNPNY-EVEAGALAVHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPLDPS 121 +EFL DKP F + DF HNA FDV FIN + + + Sbjct: 62 NEFLADKPLFEENVDQMIDFLRGAEII--IHNAAFDVPFINWELGLLKNNKYGTLEQHVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M Q Sbjct: 120 KIVDSLELARKKHPLQKNNLDALCKRYHIRNDHRTFHGALLDSELLADVYLAMTG--GQT 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAIW 237 N +T ++ + L ++ + + EHDK + L ++A W Sbjct: 178 NLVLQTTKNASKDTIDIDFDKLKLRSANETIIN------ISEHDKYLCNILKLEESAKW 230 >gi|303256972|ref|ZP_07342986.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium 1_1_47] gi|302860463|gb|EFL83540.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium 1_1_47] Length = 260 Score = 98.9 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 17/234 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTG+ +K DRIIEIG VEL ++ T++ F ++ P R+ E +++H I Sbjct: 1 MREICLDTETTGMAAKEGDRIIEIGCVELGEHGLTDKNFHEYIDPE-RQMEAEVIRVHKI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA--HNAKFDVGFINAELQRINKDPLDPSRI 123 T+EFL KP F+ I +F +F + F + + ++ I Sbjct: 60 TNEFLVGKPKFADIADKFIEFVQGARLIIHNAQFDIGFLNEELRKLGKPSMEEICGKDNI 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKR--YGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ID++ +A+ P N L++LCKR T + HGALLD+ LL VY+ + + Sbjct: 120 IDSMELAKAAFPQMHNSLDALCKRLEIDTTRRVKEGHGALLDAELLGQVYLVLKQQQGIL 179 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 +P R T+E+L E+++ ++ + K A Sbjct: 180 EIDAAPVSADVHDISDVELP-----------VIRATEEDLSENERVLEMVRKAA 222 >gi|330719972|gb|EGG98425.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC2047] Length = 212 Score = 98.9 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 76/212 (35%), Positives = 115/212 (54%), Gaps = 12/212 (5%) Query: 34 LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE 93 ++D T R + ++ P R A ++HGIT +FL DKP F+ I +EF F Sbjct: 3 VIDRKLTGRHYHQYINPE-RDIDDGAAEVHGITSDFLADKPVFADIANEFLAFIKGAE-- 59 Query: 94 WIAHNAKFDVGFINAELQRINKDPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150 + HNA FDVGFI+ E + +N+ IIDT+ +AR+KHP +N+L++LCKRYG+ Sbjct: 60 LVIHNAPFDVGFIDHEFRLLNQGHPKTSEICDIIDTIVMARKKHPGQKNNLDALCKRYGV 119 Query: 151 TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 S R HGALLD+ +L+DVY+ M G + + G +++ E + V N +R Sbjct: 120 DNSARDLHGALLDAEILADVYLLMTGGQTALMLG---ADEQAGGEAGQMVINRVSAERRP 176 Query: 211 PLFTRITKEELDEHDKTIQTLGK---NAIWDR 239 R + EEL H +Q L K + +W + Sbjct: 177 LKVIRASDEELAAHHDNLQQLEKVSGDCLWLK 208 >gi|225024402|ref|ZP_03713594.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC 23834] gi|224942783|gb|EEG23992.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC 23834] Length = 240 Score = 98.5 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 106/240 (44%), Gaps = 8/240 (3%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +R+I+ D ETTG ++DR+IE +E++D T +++ P R EA K+H Sbjct: 2 KHLRQIILDTETTGFYYDRDDRLIEFAGLEMIDRRLTGNYLHLYVHPE-RDIPEEAAKVH 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT + L+ KP F+ I + DF + + + Sbjct: 61 GITLDQLEGKPKFAEIGQQIADFIAGTELVIHNAPFDVGFLNAEFRRAGLPSVEELTANV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR +P +N L++LC R + S R HGAL+D LLS+VY+ M SQ + Sbjct: 121 VDTLVMARAMYPGQKNSLDALCTRLEVDRSKRVFHGALIDCELLSEVYLGMTR--SQFSL 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 + E+ + + V + + EE H+ + L K +IW + Sbjct: 179 ADQFAEEESAEADAPAVVIAPTERPAQLKVLAANAEENAAHEAYLDELDKKVEGGSIWRK 238 >gi|253795564|ref|YP_003038660.1| putative DNA polymerase III, epsilon subunit [Candidatus Hodgkinia cicadicola Dsem] gi|253739872|gb|ACT34207.1| putative DNA polymerase III, epsilon subunit [Candidatus Hodgkinia cicadicola Dsem] Length = 182 Score = 96.5 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 101/179 (56%), Gaps = 3/179 (1%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + K+R+I+ D ETTGL K DR+IE+ A++L D +T T+ + P K S A Sbjct: 1 MSCFKIREIILDTETTGLSVKTDRLIELAAIKLEDGRRTPHTYHSYFNPQPVKVSRSAFN 60 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI++EFL DKP+F S EF +F IAHNA+FD+ IN ELQ DP+D Sbjct: 61 VHGISNEFLSDKPAFKSCAREFLEFVAGHE--LIAHNARFDLQIINRELQMAGADPIDAG 118 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 D+LSIA++ P+ N + +LCKR+ + H A D LL+ VY ++ + Sbjct: 119 CWRDSLSIAKQLFPNRSNSMAALCKRFNLE-CETETHSAARDCELLARVYELILDEKRR 176 >gi|307069564|ref|YP_003878041.1| putative DNA polymerase III subunit epsilon [Candidatus Zinderia insecticola CARI] gi|306482824|gb|ADM89695.1| putative DNA polymerase III, epsilon subunit [Candidatus Zinderia insecticola CARI] Length = 222 Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 9/226 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 ++I+ DIETTGL+ K DRIIEI +++L+ TN+ F ++ PN RK++ +ALK+HGI+ Sbjct: 3 KEIILDIETTGLNVKKGDRIIEIACIKILNRKITNKKFHEYINPN-RKSNKDALKIHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+FLK+KP F I + +F + ++ + K I+D+ Sbjct: 62 DKFLKNKPFFKDIIDKLINFIKNYTIIIHNSSFDISFLNKEFKILKYKKFKYYVKNIVDS 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L IAR+K P+ +NDLNSLCKR+ I+I R H ALLD LLS +Y+ ++ I + Sbjct: 122 LKIARKKFPNKKNDLNSLCKRFKISIKKRKLHNALLDCILLSKIYLILIRKQKNIFY--- 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +EKK +K + +I K+E H I+ + Sbjct: 179 ----NIINKEKKINNKNKKKLVNKMINIKINKDENKIHKDIIKNIN 220 >gi|256112395|ref|ZP_05453316.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] gi|265993832|ref|ZP_06106389.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] gi|262764813|gb|EEZ10734.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] Length = 80 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 44/80 (55%), Positives = 57/80 (71%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDF 86 +E L DKP F+ I EF +F Sbjct: 61 NEQLLDKPVFAEILDEFLEF 80 >gi|262277819|ref|ZP_06055612.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114] gi|262224922|gb|EEY75381.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114] Length = 223 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 87/233 (37%), Positives = 137/233 (58%), Gaps = 11/233 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M++++ D ETTGL S ND+IIEI +E+ D+ T F VFL P + S A HGI+ Sbjct: 1 MKEVLLDTETTGLSSVNDKIIEIACIEIEDHIPTGEKFHVFLNPE-MEISQGAYDTHGIS 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 EFLK+KP F+ + +F F + + + HNA+FD+ F+N EL+ + + + I+DT Sbjct: 60 KEFLKNKPKFNDVAKDFTKFIDG--KKLVIHNAEFDLAFLNKELKEVGEKQISKDNIVDT 117 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L+IAR K P ++N L++LCKR+ I S R KH ALLD LL+ VYI++ + F F Sbjct: 118 LNIAREKFPGAQNSLDALCKRFKIDNSRRQKHSALLDCELLAKVYIELFEK-KEPTFEFD 176 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWD 238 N + +++ N+ +K K + +IT EE H + + + L K+++ + Sbjct: 177 LN------AQDESIKNVKNIKDRKQIIAQITNEEKRLHKEFLQKELPKSSMLN 223 >gi|238022806|ref|ZP_04603232.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147] gi|237866009|gb|EEP67145.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147] Length = 244 Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 120/239 (50%), Gaps = 12/239 (5%) Query: 8 RKIVFDIETTGL------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+I+ D ETTG + DR+IE +E+++ T T +++ P R EA Sbjct: 7 RQIILDTETTGFYHSAAENP--DRLIEFAGLEMVNRQLTENTLHLYIHPQ-RDIPAEAAA 63 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-P 120 +HGIT + L+ KP F+ + + +DF I HNAKFD+GF+NAE R+ P+D Sbjct: 64 IHGITLDQLEGKPVFAQVAQQIFDFLKGAE--LIIHNAKFDIGFLNAEFARVGLPPIDSV 121 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL +AR K+P +N+L++LC R G+ S R HGAL+D LL VY+ M Sbjct: 122 CSVIDTLEMARNKYPGQKNNLDALCNRLGVDRSRRVLHGALIDCELLGGVYLAMTRNQFS 181 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + + + T + + D + +E H+ + LG ++ + Sbjct: 182 LTDVLEDEAETAAPAAQTTAAPAPVFRADSLIVLHADADEAAAHEAYLDGLGSECVYRQ 240 >gi|149201054|ref|ZP_01878029.1| putative exonuclease [Roseovarius sp. TM1035] gi|149145387|gb|EDM33413.1| putative exonuclease [Roseovarius sp. TM1035] Length = 688 Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 92/173 (53%), Gaps = 6/173 (3%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 +VFD ETTGL + D I++I + +++ +F + + P GR P + ++H I+ Sbjct: 494 FVVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLVNP-GRPIPPASTRVHHIS 552 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ ++D P F DF A +AHNA FD+ F+ + + I + +P Sbjct: 553 DDMVQDAPDIIEAGRRFHDFCQG--AVLVAHNAPFDLAFLRLKEKVIGRRFDNPVLCTVL 610 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +S A S ++ L++LC+R+GITI ++H A+ D+ ++V+++M+ Sbjct: 611 MS-AGLFDHSGQHTLDALCERFGITIPPEARHTAMGDTVATAEVFVRMLGLLQ 662 >gi|21702589|gb|AAM75986.1|AF481102_22 DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps] Length = 203 Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 1/165 (0%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D ETTGL + R+ E+G VE+ T F ++ P ++ + A +H + D Sbjct: 4 RYVVLDTETTGLSPRYHRLAEVGCVEIACGRITGNFFHSYINP-RQRMTRGAQAVHRLRD 62 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 EFL ++P+F +I F + + +IDT+ Sbjct: 63 EFLAEQPTFRAIAQRLLFFLCRSTLVGHNLSFDLNFLDAGLATAGFMPAARYCHGVIDTM 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++ R L++ C R G+ R++HGAL D+ LL++ ++ Sbjct: 123 LHLAQRGRRRRFSLDACCDRLGVRRGDRARHGALEDAVLLAEAFV 167 >gi|282882108|ref|ZP_06290749.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus lacrimalis 315-B] gi|281298138|gb|EFA90593.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus lacrimalis 315-B] Length = 1415 Score = 92.3 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 118/237 (49%), Gaps = 12/237 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL D+I EIGAV+++D T R F + P + +L IT+ Sbjct: 401 YVVFDIETTGLSPIRDKITEIGAVKIVDGIITER-FSQLINPQ-MLIPEKVQELTRITNA 458 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++++P+ + +F+DF + + +AHNAKFD FI + + D ++P + + Sbjct: 459 LVENEPTIEEVAPKFYDFIKD--SVLVAHNAKFDTAFIRRVFKENDLDFINPILDTLSFA 516 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG---SQINFGF 185 A K + + +L +LCK++G++ H A+ D+ + ++IK++ I+F Sbjct: 517 RATVKD-TKKFNLATLCKKFGVS--LVGAHRAVNDAEATAHLFIKLINKIFDPKHIDFNK 573 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWDRY 240 + + E ++S+L +++ + K D H K + K ++ ++Y Sbjct: 574 LNSLKSQIEPEILFESSLSILTKNEEGLKNLYKLVSDSHMKYFNRVAKVPRSLINKY 630 >gi|167759386|ref|ZP_02431513.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704] gi|167662943|gb|EDS07073.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704] Length = 1499 Score = 91.5 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 10/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG D+IIEIGAV++ + T R F F+ P +L ITD+ Sbjct: 462 YVVFDLETTGFSPIKDKIIEIGAVKVENGKITER-FSTFVNPK-IPIPFRITQLTSITDQ 519 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P ++ +F +F + A +AHNA FDVGFI + +D + +DT++ Sbjct: 520 MVMDAPDIDTVLPQFLEFIGD--AVLVAHNASFDVGFIEQNCR--YQDIVPNFTSVDTVA 575 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +AR P+ ++ + IS + H A+ D+ +++++K + + N + Sbjct: 576 MARILLPTLSKFKLNVVANA-LHISLENHHRAVDDAGATAEIFVKFVEMLKERNIN---D 631 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 R + I L + + + Sbjct: 632 LARLNQFGSNNADAIKKLPTYHVIILALNE 661 >gi|299144044|ref|ZP_07037124.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518529|gb|EFI42268.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 1421 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 12/237 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + D I EIGAV+++D +R F + P K ++L GI+++ Sbjct: 406 FVVFDIETTGFSPQVDEITEIGAVKIVDGVIVDR-FSQLVNP-MIKIPDRVVELTGISND 463 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 F+KD+P+ + +F DF +N+ +AHNA FD+ FI + + K L + + Sbjct: 464 FVKDEPTIDKVIVDFNDFC--KNSVLVAHNAGFDISFIR---RDMLKYNLSFNFTVLDTL 518 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R N + +S + H A+ D+ ++V+IKM+ ++ + Sbjct: 519 SLARAIIKDIKRFNLTALSKKLGVSLVNAHRAVNDAEATAEVFIKMLDILKKLGIKTFCD 578 Query: 189 EDRFFKEEKKTV---PNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWDRY 240 ++ K+ ++ +ISLL ++ + K + H + + K ++ ++Y Sbjct: 579 INKLKKDIDSSILFESSISLLVKNNVGLKNLYKLVSESHMNYVNRVAKVPRSLINKY 635 >gi|260434020|ref|ZP_05787991.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260417848|gb|EEX11107.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 470 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 5/176 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL D I++IGAV ++ F + P G P + ++H ++D Sbjct: 278 FVVFDTETTGLLPHKDEIVQIGAVRVVKGRIVEGEQFDTLVNP-GIPIPPASTRVHKVSD 336 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++D P + +F ++A +AHNA FD+ F+ +R+ + P L Sbjct: 337 RMVQDAPDIITAGRQFHH--FARDAVIVAHNAPFDMAFLRRHAKRMEVEWDHPILDTVLL 394 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 S A S + L++LC R GI I +H AL D+ ++ ++M+ Sbjct: 395 S-AVLFGASETHTLDALCDRLGIEIPETLRHTALGDAVATAEALVRMLPMLQARGM 449 >gi|220927905|ref|YP_002504814.1| DNA polymerase III PolC [Clostridium cellulolyticum H10] gi|219998233|gb|ACL74834.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10] Length = 1433 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 106/223 (47%), Gaps = 10/223 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL+ + DRI EIGAV++ + +R F F+ P G +KL GIT++ Sbjct: 422 FVVFDIETTGLNPQQDRITEIGAVKVRNGQIVDR-FSAFVNP-GVSIPSFIVKLTGITND 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + +EF +F + +AHNA FDVGFI + I + + +DTL Sbjct: 480 MVKDAPPIEQVLNEFMEFIQG--SVLVAHNANFDVGFIKHNAKIIGEK--VKNPYLDTLE 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + R+ P ++ ++ + I + H A+ DS + ++I + + + Sbjct: 536 LCRKMFPELGRYKLNIVAKH-LKIELENHHRAVDDSMATAKIFIHCLNELKEKGCKNIKD 594 Query: 189 EDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 F E K + + +L ++K + K H K + Sbjct: 595 IQNAFDGEVNLKASSYHAIILVKNKVGLKNLYKIVSQSHLKYL 637 >gi|300813717|ref|ZP_07094037.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512174|gb|EFK39354.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 1415 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 61/237 (25%), Positives = 117/237 (49%), Gaps = 12/237 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL D+I EIGAV+++D T R F + P + +L IT+ Sbjct: 401 YVVFDIETTGLSPIRDKITEIGAVKIVDGIITER-FSQLINPQ-MLIPEKVQELTRITNA 458 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++++P+ + +F+DF + + +AHNAKFD FI + + D ++P + + Sbjct: 459 LVENEPTIEEVAPKFYDFIKD--SVLVAHNAKFDTAFIRRVFKENDLDFINPILDTLSFA 516 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG---SQINFGF 185 A K + + +L +LCK++G++ H A+ D+ + ++IK++ I+F Sbjct: 517 RATVKD-TKKFNLATLCKKFGVS--LVGAHRAVNDAEATAHLFIKLINKIFDPKHIDFNK 573 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWDRY 240 + + E ++S+L +++ + K D H + K ++ ++Y Sbjct: 574 LNSLKSQIEPEILFESSLSILTKNEEGLKNLYKLVSDSHMNYFNRVAKVPRSLINKY 630 >gi|213582095|ref|ZP_03363921.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 172 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 69/166 (41%), Positives = 98/166 (59%), Gaps = 11/166 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQ 172 >gi|21672521|ref|NP_660588.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|21623143|gb|AAM67799.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 234 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 93/241 (38%), Positives = 130/241 (53%), Gaps = 15/241 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 + N R IV D ETTG++S RIIEIGA+E+++ T + F ++ PN R Sbjct: 1 MMNNTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN-RLIE 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---I 113 +A K+HGITD+FL DKPSF I +F+++ I HNA FDVGFIN E Sbjct: 60 SDASKIHGITDDFLSDKPSFKDIAKDFFNYIKNSE--LIIHNASFDVGFINQEFSMLTKK 117 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +D + IIDTL IAR+ P +N L++LC RY I SHR HGA+LD+ LL +Y+ Sbjct: 118 IQDISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGKLYLL 177 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 M G I F +R F+ KK++ K + K EL H++ ++ L + Sbjct: 178 MTSGQESIIFNKNIQNERNFRYIKKSITK----KHRFLKIIKANKTELKLHNEYLKFLKE 233 Query: 234 N 234 Sbjct: 234 K 234 >gi|226227286|ref|YP_002761392.1| DNA polymerase III epsilon subunit [Gemmatimonas aurantiaca T-27] gi|226090477|dbj|BAH38922.1| DNA polymerase III epsilon subunit [Gemmatimonas aurantiaca T-27] Length = 214 Score = 90.0 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 7/215 (3%) Query: 9 KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + DRI EI V++ + + P R P L IT Sbjct: 6 FAVVDVETTGTRAAGGDRITEIAIVQVQGGQ-VGEVYSQLVNPE-RPIPPYITSLTHITW 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++D+P+F I S D + ++AHNA FD F++ E++R + L R+ Sbjct: 64 DMVRDQPTFREITSNVLDRLRG--SIFVAHNAPFDWRFVSEEVRRGSGQELSGPRLCTVR 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 SR L+ + + +GI I ++H A D+ + +M+ S+ T Sbjct: 122 FARAALPQLSRRSLDHVTRYFGIEI--AARHRAAGDALATAHALCRMLNIASEHGVESWT 179 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222 F T P + +R + +TK+++ Sbjct: 180 ALQAFVDGPVGTRPRTASDRRRRAFPLPVTKDDIA 214 >gi|317495743|ref|ZP_07954108.1| DNA polymerase III [Gemella moribillum M424] gi|316914196|gb|EFV35677.1| DNA polymerase III [Gemella moribillum M424] Length = 1446 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 98/186 (52%), Gaps = 5/186 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ DR+IEI AV++ + ++ +F+ ++ P R S +L ITD+ Sbjct: 426 YVVFDVETTGLSAERDRLIEIAAVKVKNGAEI-DSFESYINPE-RPISELITRLTSITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P + ++F+++ +++ +AHNAKFD+GFI+ +R+ + + + I Sbjct: 484 DVRDAPVEKEVMTDFYNWL-DEDDILVAHNAKFDLGFIDKSFERLGLENKNNASIDTLFI 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + R+ L++L K Y + H A+ D+ ++++IKM+ + Sbjct: 543 SRAENKEAKRHGLSNLAKMY--KVRLVQHHRAIYDTKATAEIFIKMLNQLYALGIERHNE 600 Query: 189 EDRFFK 194 D Sbjct: 601 IDNKID 606 >gi|329767541|ref|ZP_08259064.1| DNA polymerase III [Gemella haemolysans M341] gi|328835875|gb|EGF85597.1| DNA polymerase III [Gemella haemolysans M341] Length = 1449 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 102/197 (51%), Gaps = 5/197 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ DR+IEI AV++ + ++ +F+ ++ P R S +L IT++ Sbjct: 429 YVVFDVETTGLSAERDRLIEIAAVKVKNGTEI-DSFESYINPQ-RPISELITRLTSITND 486 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P + + F+++ +++ +AHNAKFD+GF++ +R+ + + + I Sbjct: 487 DVRDAPLEKEVMTNFYNWL-DKDDILVAHNAKFDLGFLDTCFERLGLENKNNASIDTLFV 545 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + R+ L++L K Y + H A+ D+ +++++KM+ ++ + Sbjct: 546 SRAENKEAKRHGLSNLAKLY--KVRLVQHHRAIYDTKATAEIFVKMLDQLYELGIEYHNE 603 Query: 189 EDRFFKEEKKTVPNISL 205 D E + + Sbjct: 604 IDEKIDLELAHKRSRTF 620 >gi|241888547|ref|ZP_04775855.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella haemolysans ATCC 10379] gi|241864814|gb|EER69188.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella haemolysans ATCC 10379] Length = 1449 Score = 89.6 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 102/197 (51%), Gaps = 5/197 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ DR+IEI AV++ + ++ +F+ ++ P R S +L IT++ Sbjct: 429 YVVFDVETTGLSAERDRLIEIAAVKVKNGAEI-DSFESYINPQ-RPISELITRLTSITND 486 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + + F+++ +++ +AHNAKFD+GF++ +R+ + + + I Sbjct: 487 DVKDAPLEKEVMTNFYNWL-DKDDILVAHNAKFDLGFLDTCFERLGLENKNNASIDTLFV 545 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + R+ L++L K Y + H A+ D+ +++++KM+ ++ + Sbjct: 546 SRAENKEAKRHGLSNLAKLY--KVRLVQHHRAIYDTKATAEIFVKMLDQLYELGIEYHNE 603 Query: 189 EDRFFKEEKKTVPNISL 205 D E + + Sbjct: 604 IDEKIDLELAHKRSRTF 620 >gi|167770615|ref|ZP_02442668.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM 17241] gi|167667210|gb|EDS11340.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM 17241] Length = 1445 Score = 89.6 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 5/171 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGL + +RI EIGAV+L + +R F F+ P R P+ +L GITD+ Sbjct: 427 IVFDLETTGLSAATERITEIGAVKLRNGEIVDR-FNTFVNPE-RSIPPKITELTGITDDD 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P +F+ F +A IAHNA FD F+ +R + + LS Sbjct: 485 VRGAPLEGEALRQFYAFCGGSSAVLIAHNAPFDTSFLRQCARRCGMEYNFTAIDTVVLSR 544 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + + + + H A D+ +L+ +YI+MM Sbjct: 545 SLFPELKKHKLD---IVAKHLGLGEFNHHRACDDAEMLARIYIRMMELMQS 592 >gi|262365378|gb|ACY61935.1| DNA polymerase III, epsilon chain [Yersinia pestis D182038] Length = 128 Score = 89.6 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 8/116 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 HGI+DEFL DKP+F+ I EF DF + HNA FD+GF++ E + + +D Sbjct: 66 HGISDEFLADKPTFADITPEFLDFIRGAE--LVIHNAAFDIGFMDYEFRMLQQDIP 119 >gi|154484752|ref|ZP_02027200.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC 27560] gi|149734600|gb|EDM50517.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC 27560] Length = 1474 Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 7/197 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFD+ETTG +K+D+IIEIGAV++ + +R F F+ P KL I D Sbjct: 408 RYVVFDLETTGFSAKSDKIIEIGAVKVENGKIIDR-FSTFVNPE-IPIPFRIEKLTSIND 465 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + D P I +F +F + + +AHN+ FD+ FI A +R + + + Sbjct: 466 EMVIDAPKIEEILPQFMEFCKD--SVMVAHNSDFDMSFIEANCKRQDLECDFTVIDTVAM 523 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 S R L+++ K GI + H H A+ D+ + +++K+ Sbjct: 524 SRYLIIG-LGRYKLDNVAKALGIVLDH--HHRAVDDAECTALIFLKLCKMLEGKGIDNLD 580 Query: 188 NEDRFFKEEKKTVPNIS 204 +R K+ K + + Sbjct: 581 ELNRQGKQSKNLIDKLP 597 >gi|85706434|ref|ZP_01037528.1| putative exonuclease [Roseovarius sp. 217] gi|85669207|gb|EAQ24074.1| putative exonuclease [Roseovarius sp. 217] Length = 688 Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 6/173 (3%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 +VFD ETTGL + D I++I + +++ F + + P GR P + ++H I+ Sbjct: 494 FVVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGECFDMLVNP-GRAIPPASTRVHHIS 552 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE ++ P F DF A +AHNA FD+ F+ + + I + +P Sbjct: 553 DEMVQGAPGIVEAGRRFHDFCQG--AVLVAHNAPFDLAFLRLKEKVIGRRFDNPVLCTVL 610 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +S A S ++ L++LC R+GITI ++H A+ D+ ++V+++M+ Sbjct: 611 MS-AGLFDHSGQHTLDALCDRFGITIPPEARHTAMGDTVATAEVFVRMLGLLQ 662 >gi|94985918|ref|YP_605282.1| DNA polymerase III, epsilon subunit [Deinococcus geothermalis DSM 11300] gi|94556199|gb|ABF46113.1| DNA polymerase III, epsilon subunit [Deinococcus geothermalis DSM 11300] Length = 180 Score = 89.2 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 8/182 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCP-----NGRKNSPEAL 60 M +VFD+ETTGL + D I+EIGA+ ++D F+ + P A Sbjct: 1 MNVVVFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQ 60 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HGI+D ++D P + EF DF + AHN FD F+ A +R P Sbjct: 61 RVHGISDAMVQDAPELGQVLPEFLDFV--GRSAVAAHNIGFDSSFMRAAARRCGLVWAPP 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + R ++L+ L +R G++ + +H +L D + ++ ++++M S Sbjct: 119 AEYCTVQLSRRAFPRERTHNLDVLAQRLGLSFAPGGRHRSLGDVQVTAEAFVRLMERLSV 178 Query: 181 IN 182 + Sbjct: 179 LG 180 >gi|2833216|sp|Q08880|DPO3E_BUCAP RecName: Full=DNA polymerase III subunit epsilon gi|1794288|gb|AAC44791.1| DNA polymerase III epsilon chain [Buchnera aphidicola] Length = 233 Score = 89.2 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 93/239 (38%), Positives = 129/239 (53%), Gaps = 15/239 (6%) Query: 4 KNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 N R IV D ETTG++S RIIEIGA+E+++ T + F ++ PN R + Sbjct: 2 NNTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN-RLIESD 60 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INK 115 A K+HGITD+FL DKPSF I +F+++ I HNA FDVGFIN E + Sbjct: 61 ASKIHGITDDFLSDKPSFKDIAKDFFNYIKNSE--LIIHNASFDVGFINQEFSMLTKKIQ 118 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + IIDTL IAR+ P +N L++LC RY I SHR HGA+LD+ LL +Y+ M Sbjct: 119 DISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGKLYLLMT 178 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 G I F +R F+ KK++ K + K EL H++ ++ L + Sbjct: 179 SGQESIIFNKNIQNERNFRYIKKSITK----KHRFLKIIKANKTELKLHNEYLKFLKEK 233 >gi|163732758|ref|ZP_02140203.1| exonuclease, putative [Roseobacter litoralis Och 149] gi|161394118|gb|EDQ18442.1| exonuclease, putative [Roseobacter litoralis Och 149] Length = 465 Score = 88.8 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 5/176 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGLD D ++++GAV +++ F + P GR P + +H I D Sbjct: 273 FVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNP-GRTIPPGSTAVHQIND 331 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P F F ++A +AHNA FD+ F+ + + + +P L Sbjct: 332 AMVADAPGFDVACRAFHQ--FAEHAVIVAHNAPFDMAFLRRQCRNQDYAFDNPVLDTVHL 389 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 S A S+ + L++LC R + I +H L D+ + + ++ F Sbjct: 390 S-AVVFGGSAEHTLDALCNRLNVHIPDDVRHTGLGDALATAKALVALIPVLEARGF 444 >gi|323191554|gb|EFZ76814.1| DNA polymerase III subunit epsilon domain protein [Escherichia coli RN587/1] Length = 155 Score = 88.8 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 60/149 (40%), Positives = 88/149 (59%), Gaps = 11/149 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP+F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAE--LVIHNATFDIGFMDYEFSLLKRDIPKTNT 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRY 148 ++ D+L++AR+ P RN L++LC RY Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARY 152 >gi|255284409|ref|ZP_05348964.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella formatexigens DSM 14469] gi|255265034|gb|EET58239.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella formatexigens DSM 14469] Length = 1530 Score = 88.8 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 84/209 (40%), Gaps = 6/209 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG +RIIEIGAV++ + T+R F F+ P +L I D Sbjct: 511 VVFDLETTGFSPTQNRIIEIGAVKVENGEITDR-FSTFVNPQ-VPIPFRIEQLTSINDNM 568 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128 + D P+ + EF DF + A AHNA FDV FI ++R + Sbjct: 569 VMDAPTIEQVLPEFLDFVGD--AVLAAHNASFDVSFIEENMRRLGLWRDFTYVDTVALAR 626 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + D + + HR+ A + + +++M+ F Sbjct: 627 VLLPQLNRFKLDTVAKALHVQLQHHHRAVDDAECTAGIYLK-FMEMLKLQGADTFDQVNE 685 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 ++ K +P ++ K R+ Sbjct: 686 LGSASLDQIKKLPTYHVIILAKNDVGRVN 714 >gi|218461621|ref|ZP_03501712.1| DNA polymerase III subunit epsilon [Rhizobium etli Kim 5] Length = 115 Score = 88.8 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 52/101 (51%), Positives = 70/101 (69%), Gaps = 2/101 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 DEFLKDK +F+ + E FF + AHNA FD+GFIN Sbjct: 61 DEFLKDKKAFAEVAEEILAFFGDAKWI--AHNATFDMGFIN 99 >gi|110678446|ref|YP_681453.1| exonuclease, putative [Roseobacter denitrificans OCh 114] gi|109454562|gb|ABG30767.1| exonuclease, putative [Roseobacter denitrificans OCh 114] Length = 465 Score = 88.8 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGLD D ++++GAV +++ F + P GR P + +H I+D Sbjct: 273 FVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNP-GRTIPPGSTAVHQISD 331 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P F F ++A +AHNA FD+ F+ + + + +P L Sbjct: 332 AMVADAPGFDVACRAFHQ--FAEHAVIVAHNAPFDMAFLRRQCRDQDYAFDNPILDTVHL 389 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 S A S+ + L++LC R + I +H L D+ + + ++ F Sbjct: 390 S-AVVFGGSAEHTLDALCDRLNVHIPDDVRHTGLGDALATAKALVALIPVLEARGF 444 >gi|218133709|ref|ZP_03462513.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC 43243] gi|217991084|gb|EEC57090.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC 43243] Length = 1403 Score = 88.5 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 10/212 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +VFDIETTG ++NDRIIEIGAV++ D +R F F+ P + KL I D Sbjct: 372 KYVVFDIETTGFSAENDRIIEIGAVKIEDGEIIDR-FSTFVNPE-VPIPFKIEKLTSIND 429 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P + EF +F +AHNA+FD GFI + + + + Sbjct: 430 SMVMGAPKIEQVLPEFLEFCEG--CVVVAHNAEFDTGFIRNKAAKQGMTFDNTVVDTLAI 487 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + + S H A+ D+ + +++KM + Sbjct: 488 ARFLVPRLHNFKLDT---LTKHFNVVLTSHHRAVDDAEATAGIFLKMCEL---LKMRDIL 541 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 D+ + V I + + +++ Sbjct: 542 TLDQLNEAGTPDVDAIRKMPTYHIILLASSEQ 573 >gi|213021700|ref|ZP_03336147.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213612768|ref|ZP_03370594.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 164 Score = 88.5 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 60/149 (40%), Positives = 87/149 (58%), Gaps = 11/149 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI DEFL DKP F+ + EF D+ + HNA FD+GF++ E +R Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRY 148 ++ D+L++AR+ P RN L++LC RY Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRY 155 >gi|329769168|ref|ZP_08260588.1| DNA polymerase III [Gemella sanguinis M325] gi|328839387|gb|EGF88965.1| DNA polymerase III [Gemella sanguinis M325] Length = 1449 Score = 88.5 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 98/186 (52%), Gaps = 5/186 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ DR+IEI AV++ + S+ +F+ ++ P R S +L ITD+ Sbjct: 429 YVVFDVETTGLSAERDRLIEIAAVKVKNGSEI-DSFESYINP-RRPISELITRLTSITDD 486 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + + F+++ +++ +AHNAKFD+GF++ +R+ + + I Sbjct: 487 DVKDAPFEEEVMTNFYNWL-DEDDILVAHNAKFDLGFLDKSFERLGLKNKNNASIDTLFI 545 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + R+ L++L K Y + H A+ D+ +++++KM+ ++ + Sbjct: 546 SRAENKEAKRHGLSNLAKLY--KVRLVQHHRAIYDTKATAEIFVKMLDQLYKLGIEYHNE 603 Query: 189 EDRFFK 194 D Sbjct: 604 IDEKID 609 >gi|119387281|ref|YP_918315.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] gi|119377856|gb|ABL72619.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] Length = 659 Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 4/175 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD ETTGLD DRI++I + + T F + P GR P + +HGITD Sbjct: 454 VVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDP-GRPIPPASTAVHGITDAM 512 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P ++ + F ++ +AHNA FD+GF+ + D + L Sbjct: 513 VAGAPDMTAALTAFHH--FAEDTVLVAHNAPFDMGFLRRAV-PETGAHFDNQVLDTVLLS 569 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 A S+ + L++L +R GI I ++H A+ D+ ++ Y++++ Sbjct: 570 AMLWGQSAPHSLDALTERLGIVIPPEARHTAMGDARATAEAYLRLIAALEAKGLD 624 >gi|254469279|ref|ZP_05082684.1| exonuclease, DNA polymerase III, epsilon subunit family [Pseudovibrio sp. JE062] gi|211961114|gb|EEA96309.1| exonuclease, DNA polymerase III, epsilon subunit family [Pseudovibrio sp. JE062] Length = 471 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 5/177 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL D I++IGAV +++ T + P GR + +H ITD Sbjct: 279 FVVFDTETTGLMPNKDEIVQIGAVRVVNRRIIPGETVDQLVNP-GRPIPAASTGVHRITD 337 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + P + S+F ++A +AHNA FD+ F+ P L Sbjct: 338 DMVVNAPDPVTATSDF--HVFAKDAVIVAHNAPFDMAFLQRYGHMSGHVWDHPILDTVLL 395 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 S A + L++LC R I I +H AL D+ + K++ + F Sbjct: 396 S-AVVFGAEQEHTLDALCARLDIEIPEALRHTALGDAQATAQALCKLLPILTSRGFD 451 >gi|296132882|ref|YP_003640129.1| DNA polymerase III, alpha subunit [Thermincola sp. JR] gi|296031460|gb|ADG82228.1| DNA polymerase III, alpha subunit [Thermincola potens JR] Length = 1442 Score = 87.3 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG D IIEIGAV++ +R F F+CP GR+ PE +L GIT+ Sbjct: 430 YVVFDLETTGFSPVTDEIIEIGAVKIHGNKILDR-FSAFVCP-GREIPPEVQELTGITNN 487 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P + + +F DF + A +AHNA+FD GF+ A +++I L + Sbjct: 488 MVSDAPPIAEVLPKFIDFVGD--AVLVAHNAQFDTGFLRANMEKILNRTLAQPVLDTLGL 545 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + L +L K + + + H A+ D+ + + IK + ++ N Sbjct: 546 ARGLFPDMKNHKLKTLAKEFNVK--LENHHRAVDDAEATAQLLIKFLERLAEHNID 599 >gi|259415529|ref|ZP_05739450.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B] gi|259348759|gb|EEW60521.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B] Length = 473 Score = 87.3 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 7/210 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL + D I++I A +++ F ++ P GR P + ++HG+ D Sbjct: 270 FVVFDTETTGLSVETDAIVQIAAQRVMNGRLVKGEVFDAYVNP-GRAIPPASTRIHGVRD 328 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D PS + F ++A +AHNA FD+G + + + P L Sbjct: 329 ADVADAPSIEQVIPAFHH--FSKDAVLVAHNAPFDIGLLRQQERATGIKWDHPVLDTVLL 386 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 S A S + L++LC+R I I + +H AL D+ ++ +K++ Sbjct: 387 S-AVVFGISQEHSLDALCQRLAIEIPAQHRHTALGDAKATAEALVKLLPLLQGKGIETFG 445 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + ++ + + +++ + ++T Sbjct: 446 ELVQETRKHGRLLKDMN--PKQPKRVVQLT 473 >gi|226323840|ref|ZP_03799358.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758] gi|225207389|gb|EEG89743.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758] Length = 1535 Score = 87.3 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 7/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + DRIIEIGAV++ D T++ F F+ P R +L ITDE Sbjct: 489 YVVFDIETTGFSAVTDRIIEIGAVKVEDGKITDK-FSTFVNPK-RPIPFRITELTSITDE 546 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P +I +F +F + A +AHNA FDVGFI +R + L+ Sbjct: 547 MVIDSPDIETILPQFIEFIGD--AVLVAHNASFDVGFIEQNCKRQKIEADFTYVDTVALA 604 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + IS + H A+ D+ +++++K + + Sbjct: 605 RVLLPALNRFKLDTVAKA---LNISLENHHRAVDDAGCTAEIFVKFVQMLKERELTTLAK 661 Query: 189 EDRFFKEEKKTVPNIS 204 + F ++ + Sbjct: 662 VNEFGDLNPDSIKKLP 677 >gi|126737494|ref|ZP_01753224.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. SK209-2-6] gi|126720887|gb|EBA17591.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. SK209-2-6] Length = 465 Score = 87.3 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 5/174 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69 VFD ETTGL D I++IGA+ +++ F+ + P G + +HG+T E Sbjct: 260 VFDTETTGLLPHKDEIVQIGALRVVNGRLVNGEGFETLVNP-GFDIPAASTAVHGVTTEM 318 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ P + + F F + + +AHNA FD+ F+ + D LS Sbjct: 319 VRNSPMIKTAGAAFHQFCKD--SVLVAHNAPFDIAFLRRHAKSSGVDWNHMVLDTVLLS- 375 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 A S + L++LC R I I +H A+ D+ ++ ++M+ F Sbjct: 376 AVIFGASVPHTLDALCDRLEINIPEALRHTAMGDAQATAEALLRMLPMLEARGF 429 >gi|226356768|ref|YP_002786508.1| DNA polymerase III subunit epsilon [Deinococcus deserti VCD115] gi|226318758|gb|ACO46754.1| putative DNA-directed DNA polymerase (DNA polymerase III, epsilon subunit) [Deinococcus deserti VCD115] Length = 202 Score = 87.3 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 8/176 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCP-----NGRKNSPEAL 60 M +VFD+ETTGL + D I+EIGA+ +++ ++ + P A Sbjct: 1 MNVVVFDLETTGLSPERDGIVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPWHAQ 60 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HGI++E ++ P+ + EF +F + + +AHN FD GF+ A+ +R+ Sbjct: 61 RVHGISNEMVRSAPTIEEVLPEFLEFVGD--SAVVAHNVGFDCGFMRAQARRLGMVWAPA 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 R ++L L +R G+ + +H + D + + Y++++ Sbjct: 119 GEHCTVQLSRRAFPKERAHNLTVLAERLGLNFAPGGRHRSFGDVQVTAHAYVRLLE 174 >gi|225388986|ref|ZP_03758710.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme DSM 15981] gi|225044966|gb|EEG55212.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme DSM 15981] Length = 1561 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 10/212 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + +RIIEIGAV++ D T++ F F+ P+ + KL I D Sbjct: 538 YVVFDIETTGFSPEKNRIIEIGAVKVTDGKITDK-FSTFVNPD-VPIPFDIEKLTSINDA 595 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P I +F +F + A +AHNA FDVGFI ++ ++DT++ Sbjct: 596 MVLPYPKIDVILPQFLEFVGD--AALVAHNASFDVGFIGHYAEKQGLA--FNPTVLDTVT 651 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGGSQINFGF 185 +AR P+ + + IS + H A+ D+ +++ ++KM+ Sbjct: 652 MARLLLPNLNRFKLDTVAKA-LNISLANHHRAVDDAGCTAEIFAAFVKMLRDRDVETLDQ 710 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + + ++ + +P ++ K RI Sbjct: 711 LNSLNAMNEDTIRKLPTYHVIILAKNDIGRIN 742 >gi|213162306|ref|ZP_03348016.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 145 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 47/108 (43%), Positives = 65/108 (60%), Gaps = 8/108 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 HGI DEFL DKP F+ + EF D+ + HNA FD+GF++ E Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAE--LVIHNASFDIGFMDYEF 114 >gi|306820890|ref|ZP_07454510.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551004|gb|EFM38975.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 1398 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 10/224 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + IVFD+ETTG ++ND I EIGA+++ + F + P R + KL GIT+ Sbjct: 381 KYIVFDLETTGFSNRNDAITEIGAIKVENGEIV-EEFSQLINPE-RPIPEKIQKLTGITN 438 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + DKP+ S + +F DF + + +AHN+ FD GF+ + N + L Sbjct: 439 EMVIDKPTISEVLPKFLDFCKD--SILVAHNSDFDTGFVREKASENNLPYDFDAIDTVIL 496 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-FK 186 S + + + +S + H A+ D+ + +++ + + F Sbjct: 497 SRLLMPDLKNHKLNTIAKE---LNVSLENHHRAVDDATATAQIFLNFISKLKAMEIENFN 553 Query: 187 TNEDRFFKEEKKTVP--NISLLKRDKPLFTRITKEELDEHDKTI 228 ++ + + N +L +++ + K H K + Sbjct: 554 EINEKIKSIDTSKIRPVNAVILAKNQAGVKDLYKLVSLAHTKYL 597 >gi|146276555|ref|YP_001166714.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17025] gi|145554796|gb|ABP69409.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17025] Length = 695 Score = 86.5 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 5/177 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL D I++I AV +++ + F + P R P + ++HGITD Sbjct: 496 YVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVFDTLVNP-RRPIPPSSTEVHGITD 554 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P + + +F + A +AHNA FD+ + + D + L Sbjct: 555 AMVADAPDMTEVGRQFHK--FAEGAVLVAHNAPFDM-EFLRRAELLIDRRFDNPILDTVL 611 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 A + + L++L R GITI ++H A+ D+ +D ++K++ F Sbjct: 612 LSAVLFGQTEVHSLDALAHRLGITIPEEARHTAIGDTVATADAFLKLLPMLQGRGFE 668 >gi|168334980|ref|ZP_02693097.1| DNA polymerase III, alpha subunit [Epulopiscium sp. 'N.t. morphotype B'] Length = 1454 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 12/224 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S +++IIEIGAV++ + TF F+ P +L GIT Sbjct: 436 FVIFDLETTGLSSSSNKIIEIGAVKIRNGKII-DTFSSFVNPET-DIPEHITELTGITTT 493 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ +++ +F +F A +AHNA FD+GFI + + + +++ Sbjct: 494 DIADAPTIAAVLPQFVEFCAS--AILVAHNADFDMGFILHNTRDLAIEFNKTYIDTVSMA 551 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFGF 185 + + N K + +S ++ H A+ D+ +++++ +M+ N Sbjct: 552 RILLPNLGNAKLSNIANK---LKVSLKNHHRAVDDASATAEIFLKFIEMLAQREIRNLDQ 608 Query: 186 KTNEDRFFKEEKKTVPNIS--LLKRDKPLFTRITKEELDEHDKT 227 E K +P +L +++ + K H Sbjct: 609 LNELSNTSAEAIKKLPTYXGIILVKNEIGRINLNKLVSASHLDY 652 >gi|116672512|ref|YP_833445.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24] gi|116612621|gb|ABK05345.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24] Length = 406 Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 93/250 (37%), Gaps = 21/250 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL N RI EI V + + ++ + P +HGI Sbjct: 5 FAVVDVETTGLFPGNHRIAEIAVVHVDPDGTVSNRWETLVNPQRDLGP---QHIHGIRAA 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127 + P F I + + +AHN FD F++ E + + P + + T+ Sbjct: 62 DILHAPVFGDIAHDVMELLAG--RVLVAHNVHFDYRFVSHELGRAGLELPFEVHDCLCTM 119 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +ARR P + L C +G+ + H A D+ + V + S F Sbjct: 120 KLARRYLPGAGRSLKDCCDSFGLN--LANAHSAGDDAEAAAHVLSNYLRMDSGNPEWFSA 177 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP-----------LFTRITK-EELDEHDKTIQTLGKNA 235 + +F P +P L R+ + DEH+ + L + A Sbjct: 178 LDRAYFSSWPAVEPKRRQPALRRPAGEPQTHFLERLVNRLPEVAGPDEHNAYLAMLDR-A 236 Query: 236 IWDRYISSNQ 245 + DR IS ++ Sbjct: 237 LMDRQISVSE 246 >gi|114707953|ref|ZP_01440845.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Fulvimarina pelagi HTCC2506] gi|114536582|gb|EAU39714.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Fulvimarina pelagi HTCC2506] Length = 466 Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 5/168 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 VFD ETTGL D I++IGA+ ++D TF + P G + K+HGITD Sbjct: 274 YCVFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTLVDPGG-PIPRASSKIHGITD 332 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + +P + F++ + + +AHNA FD+ F+ + + P Sbjct: 333 KMVMGQPRIAEAGRRFFE--FSKESVLVAHNAPFDMSFLRRHEKAMGVAFDHPIVDTVL- 389 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A + R+ L+ +C+R GI I + +H AL D+ + ++ +M+ Sbjct: 390 VSAIIFGTTERHMLDVVCERLGIRIEKKDRHTALGDARVTAEAMKRML 437 >gi|229544431|ref|ZP_04433489.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1] gi|229324916|gb|EEN90593.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1] Length = 1442 Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 6/188 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIEI AV++ D TF+ F P GR S ++L ITD+ Sbjct: 427 YVVFDVETTGLSAVYDTIIEIAAVKIQDGEVV-DTFERFANP-GRPLSNTIIELTHITDD 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD P S + E+ ++ + A +AHNA FD+GF+N L++ + I Sbjct: 485 MLKDAPDISEVLKEYNEWIGD--AVLVAHNASFDIGFLNVGLKKAGLPKSNNPVIDTLEL 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 LN+L K++ + H A+ D+ +++KM+ + Sbjct: 543 GRFLYPDFKNYRLNTLAKKFNVE--LTQHHRAIYDTEATGQIFLKMLKDARNRGITYHDE 600 Query: 189 EDRFFKEE 196 +++ E Sbjct: 601 LNQYMGEG 608 >gi|237744035|ref|ZP_04574516.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1] gi|229431264|gb|EEO41476.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1] Length = 1449 Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 6/191 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL+S + IIEIGAV++ +R + + P GR ++ ITDE Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEITSITDE 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++P + +F DF + A +AHNA FD+GFI ++++ S I Sbjct: 480 QVANEPKIDKVIGKFVDFIGD--AVLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQM 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L L K G+ H A+ DS ++++I + + + + Sbjct: 538 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGLEYMKD 595 Query: 189 EDRFFKEEKKT 199 + F+ K Sbjct: 596 INTGFEVNVKK 606 >gi|260494375|ref|ZP_05814506.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_33] gi|260198521|gb|EEW96037.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_33] Length = 1449 Score = 85.8 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 6/191 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL+S + IIEIGAV++ +R + + P GR ++ ITDE Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEITSITDE 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++P + +F DF + A +AHNA FD+GFI ++++ S I Sbjct: 480 QVANEPKIDKVIGKFVDFIGD--AVLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQM 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L L K G+ H A+ DS ++++I + + + + Sbjct: 538 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGLEYMKD 595 Query: 189 EDRFFKEEKKT 199 + F+ K Sbjct: 596 INTGFEVNVKK 606 >gi|295091739|emb|CBK77846.1| DNA polymerase III, alpha chain, Gram-positive type [Clostridium cf. saccharolyticum K10] Length = 1037 Score = 85.8 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 10/211 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG +RIIEIGAV++ + +R F F+ P E KL I+D Sbjct: 198 VVFDIETTGFSPLKNRIIEIGAVKVENGKIVDR-FSTFVNPE-VPIPFEIEKLTSISDNM 255 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P + +F +F ++ A +AHNA FD+ FI K +++ Sbjct: 256 VLGAPKIEEVLPKFLEFCSD--AVMVAHNASFDMSFIRHNAMIQGKSFEPTVLDTVSMAR 313 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGGSQINFGFK 186 + + + IS + H A+ D+ +++ +++M+ N Sbjct: 314 FLLPNLNRFKLDTVAKELR---ISLENHHRAVDDAGATAEIFVKFVEMLKSRGIENLDEL 370 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + R E + +P ++ K RI Sbjct: 371 NEQSRMSVETIRKMPTNHIIILAKNDVGRIN 401 >gi|312960549|ref|ZP_07775055.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6] gi|311285075|gb|EFQ63650.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6] Length = 105 Score = 85.8 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 40/82 (48%), Positives = 52/82 (63%), Gaps = 2/82 (2%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ RIIEIG VEL+ T R F V+L P+ R + A+ +HGIT Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPD-RDSDEGAIGVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFN 88 DEFLK KP F+ + EF++F N Sbjct: 63 DEFLKGKPRFAEVADEFFEFIN 84 >gi|169824428|ref|YP_001692039.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328] gi|167831233|dbj|BAG08149.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328] Length = 1421 Score = 85.4 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 7/194 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL + ++I EIGAV+++D + F + P + +L IT+E Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDNKIVDE-FNQLINPE-IPIPEKITELTSITNE 459 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P ++ EF F + IAHNA FD+GFI + +P+ + Sbjct: 460 MVKDMPKIDAVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCIDLGINPVRTYIDTLAFA 517 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 A H + ++ + H A D+ +V+I M+ Q F F N Sbjct: 518 RALEPHLKNHKLDT---LTKKYNVNLFNHHRACDDARATGEVFICMVNNLEQRGFKFDIN 574 Query: 189 EDRFFKEEKKTVPN 202 ++ + + Sbjct: 575 INQMDSDWSISKRE 588 >gi|239626437|ref|ZP_04669468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516583|gb|EEQ56449.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1554 Score = 85.4 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 4/209 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG K ++IIEIGAV+++D T+R F F+ P+ + KL GI D Sbjct: 531 FVVFDIETTGFSPKKNKIIEIGAVKVVDGKITDR-FSSFVNPD-VPIPFDIEKLTGINDS 588 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P I +F DF + A +AHNA FDVGFI+ + T++ Sbjct: 589 MVLPYPKIDVILPQFLDFVGD--AVLVAHNASFDVGFISHFAEEQGLHFNPTVLDTVTIA 646 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + +H + + +++M+ + Sbjct: 647 RLLLPNLNRFKLDTVAKALNISLANHHRAVDDAGATAEIFAAFVRMLRDRGVTDLEALNG 706 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + +P ++ K R+ Sbjct: 707 MSTMDTNTIRKLPTYHVIILAKNDIGRVN 735 >gi|289550944|ref|YP_003471848.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis HKU09-01] gi|315658446|ref|ZP_07911318.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590] gi|289180476|gb|ADC87721.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis HKU09-01] gi|315496775|gb|EFU85098.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590] Length = 1438 Score = 85.4 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 101/203 (49%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F P+ +K S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDQIIELAAVKVYDGEIIDK-FERFSNPH-QKLSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +RI P I Sbjct: 480 MLTDAPEIDEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERIGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMLQQMKELGVS---- 591 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 K+ K + N KR +P Sbjct: 592 ---NHKDINKKLSNEDAYKRARP 611 >gi|239827467|ref|YP_002950091.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Geobacillus sp. WCH70] gi|239807760|gb|ACS24825.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. WCH70] Length = 921 Score = 85.4 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 7/177 (3%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++ D+ETTG + K DRII++G V + + +R F F P R P +L IT Sbjct: 4 RFVIIDLETTGNVPKKGDRIIQLGMVVIENGKIVDR-FSSFFNPE-RDIPPFVQQLTNIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ + D PSF+ ++ D + AHN FD+ F+ EL P I Sbjct: 62 EQMVADAPSFAEEAAKVADMLQQSYFV--AHNVSFDLQFLQEELHMAGLPPFSGPTIDTV 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K+ I H A D+ + + ++I ++ Q+ F Sbjct: 120 ELARIVFPTAESYKLGDLAKQLHIDH--DQPHQADSDAEVTAKLFIALLNRLRQLPF 174 >gi|303233818|ref|ZP_07320472.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna BVS033A4] gi|302495252|gb|EFL55004.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna BVS033A4] Length = 1421 Score = 85.4 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 7/194 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL + ++I EIGAV+++D + F + P + +L IT+E Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDNKIVDE-FNQLINPE-IPIPEKITELTSITNE 459 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P ++ EF F + IAHNA FD+GFI + +P+ + Sbjct: 460 MVKDMPKIDAVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCIDLGINPVRTYIDTLAFA 517 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 A H + ++ + H A D+ +V+I M+ Q F F N Sbjct: 518 RALEPHLKNHKLDT---LTKKYNVNLFNHHRACDDARATGEVFICMVNNLEQRGFKFDIN 574 Query: 189 EDRFFKEEKKTVPN 202 ++ + + Sbjct: 575 INQMDSDWSISKRE 588 >gi|283798089|ref|ZP_06347242.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1] gi|291074233|gb|EFE11597.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1] Length = 1538 Score = 85.4 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 10/211 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG ++IIEIGAV++ + +R F F+ P E KL I+D Sbjct: 514 VVFDIETTGFSPLKNKIIEIGAVKVENGKIVDR-FSTFVNPE-VPIPFEIEKLTSISDNM 571 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P + +F +F ++ A +AHNA FD+ FI K +++ Sbjct: 572 VLGAPKIEEVLPKFLEFCSD--AVMVAHNASFDMSFIRHNAMIQGKSFEPTVLDTVSMAR 629 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGGSQINFGFK 186 + + + IS + H A+ D+ +++ +++M+ N Sbjct: 630 FLLPNLNRFKLDTVAKELR---ISLENHHRAVDDAGATAEIFVKFVEMLKSRGIENLDEL 686 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + R E + +P ++ K RI Sbjct: 687 NEQSRMSVETIRKMPTNHIIILAKNDVGRIN 717 >gi|325282490|ref|YP_004255031.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP] gi|324314299|gb|ADY25414.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP] Length = 185 Score = 85.4 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 8/173 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCP-----NGRKNSPEALKLH 63 +VFD+ETTGL + D I+EIGA+ + D T +Q + P A ++H Sbjct: 12 VVFDLETTGLSPERDGIVEIGALRIRDGRVVTEDPYQTLVRPQNSLGESVTIPWRAERIH 71 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++E + PS + + EF + +A +AHN FD GF+ A + I Sbjct: 72 GISNEMVVAAPSIAQVLPEFLE--WAGDAPLVAHNIGFDSGFMRAAARHCGLRWAPQREI 129 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 R R++L+SL R G++ S + +H +L D + + Y++++ Sbjct: 130 CTVQLSRRAFPRERRHNLDSLAGRLGLSFSPQGRHRSLGDVEVTAAAYLRLLE 182 >gi|325263721|ref|ZP_08130454.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium sp. D5] gi|324030759|gb|EGB92041.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium sp. D5] Length = 1498 Score = 85.4 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 7/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTG + D+IIEIGAV++++ +R F F+ P R + +L ITDE Sbjct: 461 YIVFDLETTGFSAIKDKIIEIGAVKVVNGEIVDR-FSTFVNPK-RPIPFQITQLTSITDE 518 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P +I +F + ++ +AHNA FDVGFI + + +P ++ Sbjct: 519 MVMGYPDIETILPQFLE--FAKDGVLVAHNAGFDVGFIEQNCRYQDIEPHFVYVDTVAMA 576 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + IS + H A+ D+ S++++K + + N Sbjct: 577 RVLLPTLSKYKLNVVAKA---LGISLENHHRAVDDAAATSEIFVKFVQMLKEQNITTLKE 633 Query: 189 EDRFFKEEKKTVPNIS 204 +RF + + Sbjct: 634 MNRFGDMNPNAIRKLP 649 >gi|296329433|ref|ZP_06871922.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153442|gb|EFG94272.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 1454 Score = 85.4 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 6/191 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL+S + IIEIGAV++ +R + + P GR ++ ITDE Sbjct: 427 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEITSITDE 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++P + +F DF + A +AHNA FD+GFI ++++ S I Sbjct: 485 QVANEPKIDEVIGKFVDFIGD--AVLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQM 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L L K G+ H A+ DS ++++I + + + + Sbjct: 543 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLDKYKEKGLEYMKD 600 Query: 189 EDRFFKEEKKT 199 + F+ K Sbjct: 601 INVGFEVNVKK 611 >gi|291519550|emb|CBK74771.1| DNA polymerase III catalytic subunit, PolC type [Butyrivibrio fibrisolvens 16/4] Length = 1480 Score = 85.4 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 7/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + KN++IIEIGAV+ D F F+ P +L ITD+ Sbjct: 448 YVVFDIETTGFNPKNNKIIEIGAVKFKDGEIV-DHFSEFINPE-VPIPYRITELTSITDD 505 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ I +F +F +AHNA FD FI +++ + Sbjct: 506 MVLDAPTIDVILPKFMEFCKG--TVLVAHNAGFDTSFIRYNCKQLGLEYDYTHVDT-VEV 562 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++R +L+++CK + H H A+ D+ + + ++ K +V N T Sbjct: 563 ARYLHPNNARFNLDAVCKLENVVNEH--HHRAVADAEVTAKIFEKFIVKLEAENIHTLTE 620 Query: 189 EDRFFKEEKKTVPNIS 204 + K + + + + Sbjct: 621 LNDKAKPKAEQIKKMK 636 >gi|19703626|ref|NP_603188.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713736|gb|AAL94487.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 1454 Score = 85.0 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 6/191 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL+S + IIEIGAV++ +R + + P GR ++ ITDE Sbjct: 427 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEITSITDE 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++P + +F DF + A +AHNA FD+GFI ++++ S I Sbjct: 485 QVANEPKIDEVIGKFVDFIGD--AVLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQM 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L L K G+ H A+ DS ++++I + + + + Sbjct: 543 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLDKYKEKGLEYMKD 600 Query: 189 EDRFFKEEKKT 199 + F+ K Sbjct: 601 INVGFEVNVKK 611 >gi|218510298|ref|ZP_03508176.1| DNA polymerase III subunit epsilon [Rhizobium etli Brasil 5] Length = 72 Score = 85.0 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 39/70 (55%), Positives = 53/70 (75%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSF 76 DEFLKDK +F Sbjct: 61 DEFLKDKKAF 70 >gi|302380708|ref|ZP_07269173.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna ACS-171-V-Col3] gi|302311651|gb|EFK93667.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna ACS-171-V-Col3] Length = 1421 Score = 85.0 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 7/194 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL + ++I EIGAV+++D + F + P + +L IT+E Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDNKIVDE-FNQLINPE-IPIPEKITELTSITNE 459 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P ++ EF F + IAHNA FD+GFI + +P+ + Sbjct: 460 MVKDMPKIDAVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCIDLGINPVRTYIDTLAFA 517 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 A H + ++ + H A D+ +V+I M+ Q F F N Sbjct: 518 RALESHLKNHKLDT---LTKKYNVNLFNHHRACDDARATGEVFICMVNNLEQRGFKFDIN 574 Query: 189 EDRFFKEEKKTVPN 202 ++ + + Sbjct: 575 INQMDSDWSISKRE 588 >gi|167746785|ref|ZP_02418912.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662] gi|167653745|gb|EDR97874.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662] Length = 1475 Score = 85.0 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 8/190 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG +S+ DRIIEIGAV+++D T TF F+ P + +L ITDE Sbjct: 449 FVVFDIETTGFNSQTDRIIEIGAVKVIDGEIT-ETFSEFINPQ-IPIPFKITQLTTITDE 506 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + ++ F +F + + +AHNA FD GFI+ +R++ D LS Sbjct: 507 MVMNADTIDAVLPRFLEFCGD--SVLVAHNAGFDTGFIHENAKRLDLDFHPTIVDTLGLS 564 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-FGFKT 187 + H + N + I + H A+ D+ ++IK + + F Sbjct: 565 RSLMTHLAKFTLDN---LCKNLNIKLETHHRAVDDATATGKIFIKFVQMLEEKEIFDLDQ 621 Query: 188 NEDRFFKEEK 197 + E Sbjct: 622 VNEFVAGSED 631 >gi|237785314|ref|YP_002906019.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM 44385] gi|237758226|gb|ACR17476.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM 44385] Length = 616 Score = 85.0 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 4/175 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGL + DRIIEIGAV++ + +R F F+ P GR P + GI+D+ Sbjct: 34 FVVVDLETTGLSAHEDRIIEIGAVKIHGGEEISR-FSTFVDP-GRLIPPLITNITGISDD 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + +F + + +AHNA+FD+GF+ A R + P+ + + Sbjct: 92 DVNGAPKEAQAVKDFLE--FARGTVLVAHNARFDIGFLQAASMRAHITWPQPTHLCTLVL 149 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + H AL D+ V+ ++ + Sbjct: 150 ARTMLDRCAVGSFKLSSLARHFHATTTPTHRALDDALATVTVFHGLLEELGSHDI 204 >gi|229829203|ref|ZP_04455272.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM 14600] gi|229792366|gb|EEP28480.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM 14600] Length = 1532 Score = 85.0 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 6/210 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG ++ DRIIEIGAV + T+R F F+ P GR +L I D+ Sbjct: 500 FVVFDIETTGFSAEKDRIIEIGAVRMEGGRITDR-FSSFVNP-GRPIPFRITELTSIRDD 557 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDTL 127 + + +F Q A +AHNA FD+GFI + + P + Sbjct: 558 MVIGSAGIEEVLPDFLA--FSQGAIMVAHNADFDMGFIRQNCLRLHLEAPATYMDTVAMG 615 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + + + + HR+ A +H+ + +I+M Sbjct: 616 RYLMPSLHNQKLNTLAKALKIDPGHHHRAVDDAEATAHI-FEKFIQMFRDRGMNELSDIN 674 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 R E + + + + RI Sbjct: 675 ANARMSDEVIRKMHANHCILIARNDIGRIN 704 >gi|313888341|ref|ZP_07822012.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845744|gb|EFR33134.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus harei ACS-146-V-Sch2b] Length = 1012 Score = 85.0 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 8/197 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTGL S+ND+I EIGAV++ + +R F + P ++ + L GI++ + Sbjct: 2 VFDIETTGLSSRNDKITEIGAVKIKNGMIVDR-FSQLINPE-KEIPQVVVDLTGISNAMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +++P+ + +F+D ++A +AHNAKFD+ FI E N P L+ A Sbjct: 60 ENEPTIEEVILKFYD--FAKDAVLVAHNAKFDISFIRREYANNNLVFNHPILDTLVLARA 117 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFGFKTNE 189 R +L +LCK G++ H A+ D+ ++V+IK++ + F F+ Sbjct: 118 TMSD-MKRFNLGTLCKNLGVS--LVGAHRAVNDAEATAEVFIKLIEKIKREEEFNFENLN 174 Query: 190 DRFFKEEKKTVPNISLL 206 + K + SLL Sbjct: 175 KEIVNIDSKRLFESSLL 191 >gi|7272366|gb|AAA27192.2| polymerase III epsilon (editing) subunit [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 132 Score = 85.0 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 6/84 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDF 86 HGI DEFL DKP F+ + EF D+ Sbjct: 66 HGIADEFLLDKPVFADVVDEFLDY 89 >gi|52080748|ref|YP_079539.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus licheniformis ATCC 14580] gi|52786119|ref|YP_091948.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus licheniformis ATCC 14580] gi|319645294|ref|ZP_07999527.1| DinG protein [Bacillus sp. BT1B_CT2] gi|52003959|gb|AAU23901.1| ATP-dependent helicase [Bacillus licheniformis ATCC 14580] gi|52348621|gb|AAU41255.1| DinG [Bacillus licheniformis ATCC 14580] gi|317393103|gb|EFV73897.1| DinG protein [Bacillus sp. BT1B_CT2] Length = 930 Score = 85.0 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 7/180 (3%) Query: 5 NKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N R +V D+ETTG K DRII+I AV + + T R F ++ PN + +L Sbjct: 2 NNQRYVVIDVETTGNSPKKGDRIIQIAAVVIENGQITER-FSKYVNPN-QPIPAFIEQLT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++E ++++ FS+I + ++ ++ AHN FD+ F+ ELQ ++ S + Sbjct: 60 GISNEMVENEEPFSAIAEDIFELLHDSCFI--AHNIHFDLAFVKHELQLAGFGEIECSVL 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 L L + I + H A D+ + + +++ MM ++ Sbjct: 118 DTVELSRIVFPGFDGYKLTELSEELQIRH--ENPHRADSDAEVTALIFLHMMDRLKRLPI 175 >gi|239617281|ref|YP_002940603.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1] gi|239506112|gb|ACR79599.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1] Length = 1430 Score = 84.6 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 10/222 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGLD D IIEIGAV+L F F+ P R S + ++ GI+D Sbjct: 419 YVVFDLETTGLDPSADEIIEIGAVKLKGTEVIGE-FSSFVKPE-RNLSEKVTRITGISDR 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D PS S + +F +F + + +AHNA FD F+ ++++ + I Sbjct: 477 ELEDAPSLSEVLPKFLEFCKD--SVLVAHNATFDYRFVRNAVKQLYNEDWKLPYIDTLAL 534 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + N + + + + H A D+ + ++V+ K++ + Sbjct: 535 SKSLLKSKSYSLDNVVKR---LKLGDFEHHRASEDARITAEVFKKLLSMAKKRGIKKIAE 591 Query: 189 EDRFFKEEKKTVPN---ISLLKRDKPLFTRITKEELDEHDKT 227 + K + +++L ++K + + H K Sbjct: 592 LENLRKHINISSLRPLHVTILAKNKTGLRNLYELVTLSHTKY 633 >gi|294784973|ref|ZP_06750261.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_27] gi|294486687|gb|EFG34049.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_27] Length = 1449 Score = 84.6 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 6/191 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL+S + IIEIGAV++ +R + + P GR ++ IT+E Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEITSITNE 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++P + +F DF + A +AHNA FD+GFI ++++ S I Sbjct: 480 QVANEPKIDKVIGKFVDFVGD--AVLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQM 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L L K G+ H A+ DS ++++I + + + + Sbjct: 538 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGLEYMKD 595 Query: 189 EDRFFKEEKKT 199 + F+ + Sbjct: 596 INTGFEVNVRK 606 >gi|126462986|ref|YP_001044100.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17029] gi|126104650|gb|ABN77328.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17029] Length = 695 Score = 84.6 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 5/177 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL D I++I AV +++ + + P+ R P + ++HGITD Sbjct: 496 YVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPH-RPIPPSSTEVHGITD 554 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P + F + A +AHNA FD+ + + D + L Sbjct: 555 AMVAEAPDIVEVGRRFHK--FAEGAVLVAHNAPFDM-EFLRRAEPLIGRRFDNPILDTVL 611 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 A S + L++L R GITI ++H A+ D+ +D ++K++ F Sbjct: 612 LSAVLFGQSDVHSLDALTHRIGITIPEEARHTAIGDTVATADAFLKLLPMLQGRGFE 668 >gi|332976806|gb|EGK13634.1| DNA polymerase III PolC [Desmospora sp. 8437] Length = 1099 Score = 84.6 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 6/169 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + +D IIE+ AV++ D +R F+ F+ P+ RK + +L GITDE Sbjct: 416 YVVFDVETTGLSAVHDEIIELAAVKVKDGEIIDR-FESFINPH-RKLTATITELTGITDE 473 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P S + + +F +AHNA+FD+GF+ A ++ P+D + Sbjct: 474 MVVDAPELSEVLPRYLEFIEG--TVLVAHNARFDMGFLQAACKKTGCQPVDHPVLDTLEL 531 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + LN+LCK++ I H A+ D+ + +M+ Sbjct: 532 GRFLYPRLKNHRLNTLCKQF--DIELTQHHRAIYDAEATGFLLWRMLQD 578 >gi|256028575|ref|ZP_05442409.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] gi|289766495|ref|ZP_06525873.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] gi|289718050|gb|EFD82062.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] Length = 1449 Score = 84.6 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 6/191 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL+S + IIEIGAV++ +R + + P GR ++ ITDE Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEITSITDE 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++P + + +F DF + A +AHNA FD+GFI ++++ S I Sbjct: 480 QVANEPKINEVIGKFVDFVGD--AVLVAHNAPFDMGFIKRDIKKYLNIDYKCSVIDTLQM 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L L K G+ H A+ DS ++++I + + + + Sbjct: 538 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGLEYMKD 595 Query: 189 EDRFFKEEKKT 199 + F+ K Sbjct: 596 INTGFEVNVKK 606 >gi|256845844|ref|ZP_05551302.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_36A2] gi|256719403|gb|EEU32958.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_36A2] Length = 1449 Score = 84.6 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 6/191 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL+S + IIEIGAV++ +R + + P GR ++ ITDE Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEITSITDE 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++P + +F DF + A +AHNA FD+GFI ++++ S I Sbjct: 480 QVANEPKIDEVIGKFVDFVGD--AVLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQM 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L L K G+ H A+ DS ++++I + + + + Sbjct: 538 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGLEYMKD 595 Query: 189 EDRFFKEEKKT 199 + F+ + Sbjct: 596 INTGFEVNVRK 606 >gi|332559019|ref|ZP_08413341.1| putative exonuclease [Rhodobacter sphaeroides WS8N] gi|332276731|gb|EGJ22046.1| putative exonuclease [Rhodobacter sphaeroides WS8N] Length = 695 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 5/177 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL D I++I AV +++ + + P+ R P + ++HGITD Sbjct: 496 YVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPH-RPIPPSSTEVHGITD 554 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P + F + A +AHNA FD+ + + D + L Sbjct: 555 AMVAEAPDIVEVGRRFHK--FAEGAVLVAHNAPFDM-EFLRRAEPLIGRRFDNPILDTVL 611 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 A S + L++L R GITI ++H A+ D+ +D ++K++ F Sbjct: 612 LSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVATADAFLKLLPMLQGRGFE 668 >gi|77464143|ref|YP_353647.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1] gi|77388561|gb|ABA79746.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1] Length = 695 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 5/177 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL D I++I AV +++ + + P+ R P + ++HGITD Sbjct: 496 YVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPH-RPIPPSSTEVHGITD 554 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P + F + A +AHNA FD+ + + D + L Sbjct: 555 AMVAEAPDIVEVGRRFHK--FAEGAVLVAHNAPFDM-EFLRRAEPLIGRRFDNPILDTVL 611 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 A S + L++L R GITI ++H A+ D+ +D ++K++ F Sbjct: 612 LSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVATADAFLKLLPMLQGRGFE 668 >gi|315651645|ref|ZP_07904656.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986] gi|315486099|gb|EFU76470.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986] Length = 1483 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 52/197 (26%), Positives = 86/197 (43%), Gaps = 7/197 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTG +KND I EIGAV++++ +R F F+ P R +L I+D Sbjct: 459 FIVFDIETTGFSAKNDAITEIGAVKVVNGEIVDR-FSTFVNPK-RPIPFRIEELTHISDA 516 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P I +F DF + AHNA FD GFI +RIN + ++ Sbjct: 517 MVVNAPVIEEILPKFLDFCEDYTIV--AHNAGFDTGFIRENAKRINAEYNPSIIDTVAMA 574 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R L+++CK I+ H A+ D+ ++++++ + ++ Sbjct: 575 RLLLPD-LNRFKLDTVCKALNIS--LEGHHRAVNDAEATAEIWVEFIKRLKAKGINKLSD 631 Query: 189 EDRFFKEEKKTVPNISL 205 + V Sbjct: 632 VASLGETNADIVKKTKY 648 >gi|294783112|ref|ZP_06748436.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 1_1_41FAA] gi|294479990|gb|EFG27767.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 1_1_41FAA] Length = 1449 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 6/191 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL+S ++IIEIGAV++ +R + + P G ++ IT+E Sbjct: 422 FVVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDR-YSQLINP-GISIPYHITEITSITNE 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++P + +F +F + A +AHNA FD+GFI +++ L+ S I Sbjct: 480 QVANQPKIDEVIGKFVEFIGD--AVLVAHNAPFDMGFIKRDIKEYLNIDLECSVIDTLQM 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L L K G+ H A+ DS ++++I + + + + Sbjct: 538 ARDLFPDFKKYGLGDLNKALGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGIEYLKD 595 Query: 189 EDRFFKEEKKT 199 ++ F+ K Sbjct: 596 INKGFEVNVKK 606 >gi|242373555|ref|ZP_04819129.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1] gi|242348918|gb|EES40520.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1] Length = 1442 Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F P+ R S + L ITD+ Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHDGEIIDK-FERFSNPHER-LSETIINLTHITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 484 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVN---- 595 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 596 ---NHNEINKKLTNEDAYKRARP 615 >gi|330984026|gb|EGH82129.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. lachrymans str. M301315] Length = 234 Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 94/228 (41%), Gaps = 9/228 (3%) Query: 12 FDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTGLD K D+++E VEL+D KT R ++ P + DE + Sbjct: 2 FDTETTGLDPKTGDKMVEAAFVELIDRKKTGRFLHLYFDPKRDVPDEAREVHNLSRDELV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--IIDTLS 128 + + A +AHN+KFD GF + E Q L IID+L+ Sbjct: 62 RLSGGRVFGHFAQQIIDFIKGATLVAHNSKFDEGFFDMEFQHAGYGKLSDYCESIIDSLA 121 Query: 129 IARRKHPSSRNDLNS-LCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A K P +N L++ L + G R HGALLD+ LL+ VY+ M V ++ Sbjct: 122 VASMKRPGRQNSLDALLREYVGTENYSREYHGALLDADLLAQVYLLMTVSQEGLSLD--- 178 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 R P + + + ++ H + + K + Sbjct: 179 --TRLKATGPSLRPARLEVPEGALSVVSVNEAAMERHRSLSERIKKTS 224 >gi|221640011|ref|YP_002526273.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131] gi|221160792|gb|ACM01772.1| DNA polymerase III, epsilon subunit precursor [Rhodobacter sphaeroides KD131] Length = 695 Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 5/177 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL D I++I AV +++ + + P+ R P + ++HGITD Sbjct: 496 YVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPH-RSIPPSSTEVHGITD 554 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P + F + A +AHNA FD+ + + D + L Sbjct: 555 AMVAEAPDIVEVGRRFHK--FAEGAVLVAHNAPFDM-EFLRRAEPLIGRRFDNPILDTVL 611 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 A S + L++L R GITI ++H A+ D+ +D ++K++ F Sbjct: 612 LSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVATADAFLKLLPMLQGRGFE 668 >gi|307690728|ref|ZP_07633174.1| DNA polymerase III PolC [Clostridium cellulovorans 743B] Length = 1439 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 11/212 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG S+NDRIIEIGAV++ + + F VF+ P + E +L GI + Sbjct: 426 FVVFDIETTGFSSQNDRIIEIGAVKVKNGEIIDE-FSVFVNPQ-KDIPLEITELTGIDNY 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD + + EF+DF + + +AHNA FD FI + + P L Sbjct: 484 MVKDAKTIDIVIKEFYDFVDG--SILVAHNAAFDTSFIKKNYLDNDLEFNYPIMDTIPL- 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF----G 184 ++ LN +CK GIT + H A+ D+ + V++K Sbjct: 541 CKYLYPALNKYKLNVICKYLGIT--LLNHHRAVDDAKATAMVFLKAQEELRSREIIKLSD 598 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + +K + +I LL +++ + Sbjct: 599 LNKEYKQTQDIKKLPMNHIILLSKNQVGIKNL 630 >gi|153810942|ref|ZP_01963610.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174] gi|149832830|gb|EDM87913.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174] Length = 1439 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 7/197 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +VFDIETTG +IIEIGAV + + T+R F F+ P +L I D Sbjct: 412 KFVVFDIETTGFSPLTCQIIEIGAVRVENGVITDR-FSTFVNPK-VPIPYRIEQLTSIND 469 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P +I +F +F A +AHNA FD+ FI +R + Sbjct: 470 SMVMDAPDIQTILPQFLEFCAG--AVMVAHNADFDMSFIIENCKRQGLPQEYTYVDTVGM 527 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + +R L+++ K G+++ H H A+ D+ ++++++ + + + Sbjct: 528 ARFLLPA-LNRFKLDTVAKAVGVSLDH--HHRAVDDAACTAEIFVRFVEMLKERDIFDMD 584 Query: 188 NEDRFFKEEKKTVPNIS 204 ++ T+ + Sbjct: 585 TLNQQGNVSVNTIKKLP 601 >gi|302874658|ref|YP_003843291.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B] gi|302577515|gb|ADL51527.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B] Length = 1443 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 11/212 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG S+NDRIIEIGAV++ + + F VF+ P + E +L GI + Sbjct: 430 FVVFDIETTGFSSQNDRIIEIGAVKVKNGEIIDE-FSVFVNPQ-KDIPLEITELTGIDNY 487 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD + + EF+DF + + +AHNA FD FI + + P L Sbjct: 488 MVKDAKTIDIVIKEFYDFVDG--SILVAHNAAFDTSFIKKNYLDNDLEFNYPIMDTIPL- 544 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF----G 184 ++ LN +CK GIT + H A+ D+ + V++K Sbjct: 545 CKYLYPALNKYKLNVICKYLGIT--LLNHHRAVDDAKATAMVFLKAQEELRSREIIKLSD 602 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + +K + +I LL +++ + Sbjct: 603 LNKEYKQTQDIKKLPMNHIILLSKNQVGIKNL 634 >gi|304439997|ref|ZP_07399890.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371489|gb|EFM25102.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640] Length = 1403 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 22/247 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + + +VFDIE+TGL +D I EIGAV++ D +R F F+ P R + ++L Sbjct: 387 KNYNQKFVVFDIESTGLSPASDMITEIGAVKIEDGVIVDR-FSRFVNP-MRPIPEKVVEL 444 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 IT+E + ++P + +F +F + A +AHNA+FD FI ++ ++ P Sbjct: 445 TRITNEMVANEPPIEVVIKDFVEFIGD--ATLVAHNAEFDTAFIRRDMDKVGLKFDFPVL 502 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI- 181 LS A R +L+++CK+ G+ H A+ D+ ++ +IKMM G Sbjct: 503 DTLYLSRAILND-LKRFNLSAICKKLGVN--LEGAHRAVNDAEATAEAFIKMMKLGGSPK 559 Query: 182 ------NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT--IQTLGK 233 K ++ F ++ + ++ + H + I+ Sbjct: 560 SFEEINKLFDKIDKSVLFSKDSTAIVQTQEGLKNLYKLVSAS------HMEYFNIEAKVP 613 Query: 234 NAIWDRY 240 I+++Y Sbjct: 614 KTIFNKY 620 >gi|126698903|ref|YP_001087800.1| DNA polymerase III PolC-type [Clostridium difficile 630] gi|255100324|ref|ZP_05329301.1| DNA polymerase III PolC-type [Clostridium difficile QCD-63q42] gi|255306262|ref|ZP_05350434.1| DNA polymerase III PolC-type [Clostridium difficile ATCC 43255] gi|115250340|emb|CAJ68162.1| DNA polymerase III PolC-type (PolIII) [Clostridium difficile] Length = 1432 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 4/216 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + ND+I EIGAV++ ++ +R F + P + S + +L GIT+E Sbjct: 418 FVVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGITNE 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KDKP+ + +F +F + + +AHNA+FD GFI+ + + + L+ Sbjct: 476 LIKDKPTIEEVLPKFMEFVGD--SVLVAHNAEFDTGFISQKCREQGLLYNNKKVDTLMLA 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + ++H + L+ + +++M+ N Sbjct: 534 RVMLPNLKRHRLNVVAKELGIPLLNHHRAVDDAEATALIFNKFLQMLTEKGAKTLSDVNN 593 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224 K + +I+L+ ++ + K D H Sbjct: 594 ILGKIDYTKLSTNHITLIAKNSIGIKNLYKIISDAH 629 >gi|307945225|ref|ZP_07660561.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium sp. TrichSKD4] gi|307771098|gb|EFO30323.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium sp. TrichSKD4] Length = 470 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 5/166 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69 VFD ETTGL D I++IGAV +++ + P GR P + K+HGITDE Sbjct: 280 VFDTETTGLMPNKDEIVQIGAVRVVNGKIVPGEVIDQLVDP-GRPIPPASTKVHGITDEM 338 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K P + +F +++ +AHNA FD+ F++ + + P LS Sbjct: 339 VKGAPDAVTSVQQFHT--FAKDSVIVAHNAPFDMAFLHRYGRESGLEWDHPIMDTVLLS- 395 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A + + L++LC R G+TI +H AL D+ ++V ++ Sbjct: 396 AVVYGTTEIHTLDALCDRLGVTIPVELRHTALGDAQATAEVLCHLL 441 >gi|254974851|ref|ZP_05271323.1| DNA polymerase III PolC-type [Clostridium difficile QCD-66c26] gi|255313978|ref|ZP_05355561.1| DNA polymerase III PolC-type [Clostridium difficile QCD-76w55] gi|255516658|ref|ZP_05384334.1| DNA polymerase III PolC-type [Clostridium difficile QCD-97b34] gi|255649757|ref|ZP_05396659.1| DNA polymerase III PolC-type [Clostridium difficile QCD-37x79] gi|260682913|ref|YP_003214198.1| DNA polymerase III PolC-type [Clostridium difficile CD196] gi|260686511|ref|YP_003217644.1| DNA polymerase III PolC-type [Clostridium difficile R20291] gi|260209076|emb|CBA62219.1| DNA polymerase III PolC-type [Clostridium difficile CD196] gi|260212527|emb|CBE03476.1| DNA polymerase III PolC-type [Clostridium difficile R20291] Length = 1432 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 4/216 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + ND+I EIGAV++ ++ +R F + P + S + +L GIT+E Sbjct: 418 FVVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGITNE 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KDKP+ I +F +F + + +AHNA+FD GFI+ + + + L+ Sbjct: 476 LIKDKPTIEEILPKFMEFVGD--SVLVAHNAEFDTGFISQKCREQGLLYNNKKVDTLMLA 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + ++H + L+ + +++M+ N Sbjct: 534 RVMLPNLKRHRLNVVAKELGIPLLNHHRAVDDAEATALIFNKFLQMLTEKGAKTLSDVNN 593 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224 K + +I+L+ ++ + K D H Sbjct: 594 ILGKIDYTKLSTNHITLIAKNSIGIKNLYKIISDAH 629 >gi|325126001|gb|ADY85331.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 1445 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 13/208 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ + ++ + Sbjct: 426 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH---HPLSETTINLTSIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + N HN +FDVGF++A L+R + + Sbjct: 482 DEMVQAADDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEISQPVVDTLEV 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 SR+ L+SLC++Y + + H H A D+ + K++ F Sbjct: 542 SRLLHPEQSRHTLDSLCRKYNVPLEH--HHRANQDAEATGYLMFKLLD-------AFNDK 592 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + N KR +P + Sbjct: 593 YQEDDLGKMNDYSNGEGYKRARPTHITV 620 >gi|237742507|ref|ZP_04572988.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13] gi|229430155|gb|EEO40367.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13] Length = 1449 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 6/191 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL+S + IIEIGAV++ +R + + P GR ++ ITDE Sbjct: 422 FVIFDIETTGLNSHTNEIIEIGAVKIKSGRIVDR-YSQLINP-GRPIPYHITEITSITDE 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++P + + +F DF + A +AHNA FD+GFI ++++ S I Sbjct: 480 QVANEPKINEVIGKFVDFVGD--AVLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQM 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L L K G+ H A+ DS ++++I + + + + Sbjct: 538 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGLEYMKD 595 Query: 189 EDRFFKEEKKT 199 + F+ K Sbjct: 596 INIGFEVNVKK 606 >gi|325685948|gb|EGD28011.1| DNA polymerase III PolC [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 1402 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 82/208 (39%), Gaps = 13/208 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ + ++ + Sbjct: 383 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH---HPLSETTINLTSIT 438 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + N HN +FDVGF+NA L+R + + Sbjct: 439 DEMVQAADDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVNAALKRCGYPEISQPVVDTLEV 498 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 SR+ L+SLC++Y + + H H A D+ + K++ F Sbjct: 499 SRLLHPEQSRHTLDSLCRKYNVALEH--HHRANQDAEATGYLMFKLLD-------AFNDK 549 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + N KR +P + Sbjct: 550 YQEDDLGKMNDYSNGEGYKRARPTHITV 577 >gi|313124033|ref|YP_004034292.1| DNA polymerase iii, alpha subunit (gram-positive type) (polc) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280596|gb|ADQ61315.1| DNA polymerase III, alpha subunit (Gram-positive type) (PolC) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 1445 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 82/208 (39%), Gaps = 13/208 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ + ++ + Sbjct: 426 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH---HPLSETTINLTSIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + N HN +FDVGF+NA L+R + + Sbjct: 482 DEMVQAADDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVNAALKRCGYPEISQPVVDTLEV 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 SR+ L+SLC++Y + + H H A D+ + K++ F Sbjct: 542 SRLLHPEQSRHTLDSLCRKYNVALEH--HHRANQDAEATGYLMFKLLD-------AFNDK 592 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + N KR +P + Sbjct: 593 YQEDDLGKMNDYSNGEGYKRARPTHITV 620 >gi|255655317|ref|ZP_05400726.1| DNA polymerase III PolC-type [Clostridium difficile QCD-23m63] Length = 1432 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 4/216 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + ND+I EIGAV++ ++ +R F + P + S + +L GIT+E Sbjct: 418 FVVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGITNE 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KDKP+ + +F +F + + +AHNA+FD GFI+ + + + L+ Sbjct: 476 LIKDKPTIEEVLPKFMEFVGD--SVLVAHNAEFDTGFISQKCREQGLLYNNKKVDTLMLA 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + ++H + L+ + +++M+ N Sbjct: 534 RVMLPNLKRHRLNVVAKELGIPLLNHHRAVDDAEATALIFNKFLQMLTEKGAKTLSDVNN 593 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224 K + +I+L+ ++ + K D H Sbjct: 594 ILGKIDYTKLSTNHITLIAKNSVGIKNLYKIISDAH 629 >gi|296451302|ref|ZP_06893042.1| DNA polymerase III PolC [Clostridium difficile NAP08] gi|296880346|ref|ZP_06904309.1| DNA polymerase III PolC [Clostridium difficile NAP07] gi|296259908|gb|EFH06763.1| DNA polymerase III PolC [Clostridium difficile NAP08] gi|296428587|gb|EFH14471.1| DNA polymerase III PolC [Clostridium difficile NAP07] Length = 1432 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 4/216 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + ND+I EIGAV++ ++ +R F + P + S + +L GIT+E Sbjct: 418 FVVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGITNE 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KDKP+ + +F +F + + +AHNA+FD GFI+ + + + L+ Sbjct: 476 LIKDKPTIEEVLPKFMEFVGD--SVLVAHNAEFDTGFISQKCREQGLLYNNKKVDTLMLA 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + ++H + L+ + +++M+ N Sbjct: 534 RVMLPNLKRHRLNVVAKELGIPLLNHHRAVDDAEATALIFNKFLQMLTEKGAKTLSDVNN 593 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224 K + +I+L+ ++ + K D H Sbjct: 594 ILGKIDYTKLSTNHITLIAKNSVGIKNLYKIISDAH 629 >gi|160940984|ref|ZP_02088323.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC BAA-613] gi|158436074|gb|EDP13841.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC BAA-613] Length = 1565 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 83/209 (39%), Gaps = 4/209 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG K ++IIEIGAV+++D T++ F F+ P+ + KL GI D Sbjct: 542 FVVFDIETTGFSPKKNKIIEIGAVKVVDGRITDK-FSTFVNPD-VPIPFDIEKLTGINDS 599 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P I +F +F + A +AHNA FDVGFI +++ ++ Sbjct: 600 MVLPYPKIDVILPQFLEFVGD--AVLVAHNASFDVGFIGHFAEKLELPFDPTVLDTVAIA 657 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + +H + + ++KM+ + Sbjct: 658 RLLLPNLNRFKLDTVAKALNISLQNHHRAVDDAGATAEIFAAFVKMLRDRDVNDLNQLNA 717 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + + +P ++ K R+ Sbjct: 718 LSTMDTDTIRKLPTHHVIILAKNDIGRVN 746 >gi|153854163|ref|ZP_01995471.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814] gi|149753212|gb|EDM63143.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814] Length = 1513 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 46/210 (21%), Positives = 86/210 (40%), Gaps = 10/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG D+IIEIGAV++ T++ F F+ P + +L ITD+ Sbjct: 470 YVVFDLETTGFSPIKDKIIEIGAVKVEHGEITDK-FSTFVNPK-VPIPFQITQLTSITDQ 527 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P ++ +F +F + A +AHNA FDV FI + + P S ++ Sbjct: 528 MVIGAPDIETVLPQFLEFIGD--AALVAHNASFDVSFIEQNCRYQDIQPDFTSVDTVAMA 585 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + IS + H A+ D+ +++++K + + Sbjct: 586 RILLPTLSKYKLNVVANALH---ISLENHHRAVDDAGATAEIFVKFVEMLKDRGI---YD 639 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + + + + L + + + Sbjct: 640 LAKLNQFGENNADAVRKLPSYHVIILALNE 669 >gi|218283081|ref|ZP_03489176.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989] gi|218216150|gb|EEC89688.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989] Length = 1446 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 19/237 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE G V++ + + R Q+F+ P R L IT Sbjct: 397 FVVFDLETTGLSNTRDEIIEFGGVKIKNREEVGR-LQMFINPK-RTIPAHISNLTHITQN 454 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTL 127 + E +F + + +AHNA FDVGF+NA ++ +D L L Sbjct: 455 DVDCAKPIEDALDELLEFIGD--SILVAHNATFDVGFMNAACRKTGRDELTNPVIDTLPL 512 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 S A R +L S+C+ Y ++ H A D+ +LS V MM +Q+ Sbjct: 513 SYAMLPDEQKRFNLGSVCRHYRVSYDGEGAHRADYDADVLSQVMYNMM---NQLGHDATL 569 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPL---FTRITKEELDE--------HDKTIQTLGK 233 + + + + +R++P K+ L E H + + ++GK Sbjct: 570 DTLMDMEGGCEKYSSKKPYERNRPYHMTVFAKNKDGLKELFELITLSHTQYLVSMGK 626 >gi|325479569|gb|EGC82665.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus prevotii ACS-065-V-Col13] Length = 1369 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 7/166 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL DRI EIGAV++ + T + + P S + + GIT+E Sbjct: 353 FVVFDLETTGLSKYKDRITEIGAVKVENGKIT-EEYNQLVNPE-MVISEKITDITGITNE 410 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P + +F F + + + N FDVGFI R+ + ++ Sbjct: 411 MVEDCPKIDEVMKDFLKFCGD--SILVGQNTDFDVGFIKENCFRMEIEFNPLYLDTLPMA 468 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 A + K + I + H A D+ + ++IKM Sbjct: 469 RALFSDMKKFSLDKIARK---LEIPAFNHHRASDDARATAQIFIKM 511 >gi|83590002|ref|YP_430011.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC 39073] gi|83572916|gb|ABC19468.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC 39073] Length = 921 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 5/167 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGLD DRIIEI AV L + T R FQ + P GR P +L GI+D Sbjct: 6 YVVLDVETTGLDPARDRIIEIAAVRLEGGNIT-RQFQTLVNP-GRPIPPAIERLTGISDA 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P + D F + A + HN FD+ F+N L PL + + + Sbjct: 64 MVREAPPLPEVLPGLLDLFRD--AIPVGHNGTFDLAFLNQALGHGWHSPLLDTLALSRIL 121 Query: 129 IARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIKM 174 L + G + L +++ Sbjct: 122 FPCLASHRLDYMSKYLTLEATGHHRALDDVLTTARLLENLWQATLEL 168 >gi|104774216|ref|YP_619196.1| DNA polymerase III, alpha subunit ( type) (PolC) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423297|emb|CAI98138.1| DNA polymerase III, alpha subunit (gram-positive type) (PolC) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 1411 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 13/208 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ + ++ + Sbjct: 392 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH---HPLSETTINLTSIT 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + N HN +FDVGF++A L+R + + Sbjct: 448 DEMVQAADDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEISQPVVDTLEV 507 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 SR+ L+SLC++Y + + H H A D+ + K++ F Sbjct: 508 SRLLHPEQSRHTLDSLCRKYNVPLEH--HHRANQDAEATGYLMFKLLD-------AFNDK 558 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + N KR +P + Sbjct: 559 YQEDDLGKMNDYSNGEGYKRARPTHITV 586 >gi|262202943|ref|YP_003274151.1| DNA polymerase III subunit epsilon [Gordonia bronchialis DSM 43247] gi|262086290|gb|ACY22258.1| DNA polymerase III, epsilon subunit [Gordonia bronchialis DSM 43247] Length = 595 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 4/168 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG D DRI EIGAV++ F + P R P+ + L GIT Sbjct: 39 VVVDLETTGSDPAGDRITEIGAVKIRGGEVLGE-FATLVDPE-RSIPPQIVTLTGITHAM 96 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P + F + + + +AHNA+FD+GF+ QR++ D P + Sbjct: 97 VSAAPRIEEVLPAFIE--FARGSILVAHNARFDMGFLRRNAQRLHLDFPFPLSLCTVTMA 154 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R H + +S R H AL D+ +V+ ++ Sbjct: 155 RRILHREEAPTVRLSALADLFDVSVRPTHRALDDARATVEVFHHLLER 202 >gi|329724322|gb|EGG60834.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU144] Length = 1438 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVN---- 591 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 592 ---NHLEINKKLTNEDAYKRARP 611 >gi|253731883|ref|ZP_04866048.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724293|gb|EES93022.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|320144365|gb|EFW36131.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus MRSA177] Length = 1442 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 484 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 594 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 595 --LNHNEINKKLSNEDAYKRARP 615 >gi|73919252|sp|Q5HPS7|DPO3_STAEQ RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|329736245|gb|EGG72517.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU028] gi|329736547|gb|EGG72813.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU045] Length = 1438 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVN---- 591 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 592 ---NHLEINKKLTNEDAYKRARP 611 >gi|329733603|gb|EGG69931.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 21193] Length = 1438 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611 >gi|323441043|gb|EGA98750.1| DNA polymerase III PolC [Staphylococcus aureus O11] Length = 1436 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 478 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 588 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 589 --LNHNEINKKLSNEDAYKRARP 609 >gi|253733498|ref|ZP_04867663.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH130] gi|253728552|gb|EES97281.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH130] Length = 1438 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611 >gi|57866746|ref|YP_188413.1| DNA polymerase III PolC [Staphylococcus epidermidis RP62A] gi|293366772|ref|ZP_06613448.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W2(grey)] gi|57637404|gb|AAW54192.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis RP62A] gi|291319073|gb|EFE59443.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W2(grey)] Length = 1436 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 478 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVN---- 589 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 590 ---NHLEINKKLTNEDAYKRARP 609 >gi|57651834|ref|YP_186140.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus COL] gi|87161645|ref|YP_493854.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194974|ref|YP_499774.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus NCTC 8325] gi|161509430|ref|YP_001575089.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848260|ref|ZP_06789007.1| DNA polymerase III [Staphylococcus aureus A9754] gi|56749834|sp|P68852|DPO3_STAAW RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|110808208|sp|Q2G1Z8|DPO3_STAA8 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|123486180|sp|Q2FHH4|DPO3_STAA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|12082347|dbj|BAB20885.1| PolC [Staphylococcus aureus] gi|57286020|gb|AAW38114.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus COL] gi|87127619|gb|ABD22133.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202532|gb|ABD30342.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus NCTC 8325] gi|160368239|gb|ABX29210.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294825060|gb|EFG41482.1| DNA polymerase III [Staphylococcus aureus A9754] Length = 1436 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 478 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 588 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 589 --LNHNEINKKLSNEDAYKRARP 609 >gi|283470479|emb|CAQ49690.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus ST398] Length = 1438 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611 >gi|27467858|ref|NP_764495.1| DNA polymerase III PolC [Staphylococcus epidermidis ATCC 12228] gi|32469713|sp|Q8CPG6|DPO3_STAES RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|27315403|gb|AAO04537.1|AE016747_34 DNA polymerase III, alpha chain PolC-type [Staphylococcus epidermidis ATCC 12228] Length = 1442 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 484 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVN---- 595 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 596 ---NHLEINKKLTNEDAYKRARP 615 >gi|282918963|ref|ZP_06326698.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C427] gi|282316773|gb|EFB47147.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C427] Length = 1438 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611 >gi|258423895|ref|ZP_05686780.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9635] gi|257845924|gb|EEV69953.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9635] Length = 1438 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611 >gi|238924126|ref|YP_002937642.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656] gi|238875801|gb|ACR75508.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656] Length = 1510 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 78/197 (39%), Gaps = 7/197 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +VFDIETTG + ++IIEIGAV+++ +R + F+ P +L I D Sbjct: 479 KYVVFDIETTGFSPEKNKIIEIGAVKVIGGEIVDR-YSTFINPE-VPIPFRIEELTSIRD 536 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P+ I +F +F + +AHNA FD+ FI + + L Sbjct: 537 DMVITSPTVDVILPQFMEFCKD--CIMVAHNADFDMSFIKRNCALLGMECNPTIVDTVAL 594 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + + IS H A+ D+ +++++K + Sbjct: 595 ARVLLPQLNRFKLDTVAKA---LNISLDHHHRAVDDAACTAEIFVKFIEKLKDRGISSLD 651 Query: 188 NEDRFFKEEKKTVPNIS 204 + K + + + Sbjct: 652 EVNALAKSSVEMIRKMP 668 >gi|320140919|gb|EFW32766.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus MRSA131] Length = 1436 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 478 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 588 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 589 --LNHNEINKKLSNEDAYKRARP 609 >gi|282876304|ref|ZP_06285171.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis SK135] gi|281295329|gb|EFA87856.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis SK135] Length = 1438 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVN---- 591 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 592 ---NHLEINKKLTNEDAYKRARP 611 >gi|269202881|ref|YP_003282150.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98] gi|295406201|ref|ZP_06816008.1| DNA polymerase III [Staphylococcus aureus A8819] gi|297244429|ref|ZP_06928312.1| DNA polymerase III [Staphylococcus aureus A8796] gi|262075171|gb|ACY11144.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98] gi|294968789|gb|EFG44811.1| DNA polymerase III [Staphylococcus aureus A8819] gi|297178459|gb|EFH37705.1| DNA polymerase III [Staphylococcus aureus A8796] Length = 1436 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 478 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 588 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 589 --LNHNEINKKLSNEDAYKRARP 609 >gi|21282876|ref|NP_645964.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MW2] gi|49486103|ref|YP_043324.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MSSA476] gi|151221386|ref|YP_001332208.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str. Newman] gi|221142498|ref|ZP_03566991.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452563|ref|ZP_05700569.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5948] gi|262048156|ref|ZP_06021043.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus D30] gi|262051326|ref|ZP_06023549.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus 930918-3] gi|282920508|ref|ZP_06328229.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9765] gi|284024257|ref|ZP_06378655.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus 132] gi|297208090|ref|ZP_06924521.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912171|ref|ZP_07129614.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70] gi|304381172|ref|ZP_07363825.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|56748669|sp|Q6G9U9|DPO3_STAAS RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|73919251|sp|Q5HGG7|DPO3_STAAC RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|172049022|sp|A6QGG4|DPO3_STAAE RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|21204315|dbj|BAB95012.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus MW2] gi|49244546|emb|CAG42975.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus MSSA476] gi|150374186|dbj|BAF67446.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus str. Newman] gi|257859781|gb|EEV82623.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5948] gi|259160701|gb|EEW45722.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus 930918-3] gi|259163722|gb|EEW48277.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus D30] gi|282594170|gb|EFB99157.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9765] gi|296887333|gb|EFH26235.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886417|gb|EFK81619.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70] gi|302751087|gb|ADL65264.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340155|gb|EFM06096.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198506|gb|EFU28835.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS01] gi|329313934|gb|AEB88347.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus T0131] gi|329727848|gb|EGG64299.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 21189] Length = 1438 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611 >gi|298694556|gb|ADI97778.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus ED133] Length = 1436 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 478 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 588 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 589 --LNHNEINKKLSNEDAYKRARP 609 >gi|295427751|ref|ZP_06820383.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128109|gb|EFG57743.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16] Length = 1436 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 478 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 588 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 589 --LNHNEINKKLSNEDAYKRARP 609 >gi|282916524|ref|ZP_06324282.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus D139] gi|283770328|ref|ZP_06343220.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus H19] gi|282319011|gb|EFB49363.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus D139] gi|283460475|gb|EFC07565.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus H19] Length = 1438 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611 >gi|269940755|emb|CBI49137.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus TW20] Length = 1438 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611 >gi|251810695|ref|ZP_04825168.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060] gi|251805855|gb|EES58512.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060] Length = 1442 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 484 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVN---- 595 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 596 ---NHLEINKKLTNEDAYKRARP 615 >gi|257425318|ref|ZP_05601743.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 55/2053] gi|257427979|ref|ZP_05604377.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 65-1322] gi|257430612|ref|ZP_05606994.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus 68-397] gi|257433372|ref|ZP_05609730.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus E1410] gi|257436214|ref|ZP_05612261.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M876] gi|282910836|ref|ZP_06318639.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WBG10049] gi|282914041|ref|ZP_06321828.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M899] gi|282924086|ref|ZP_06331762.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C101] gi|293501073|ref|ZP_06666924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293510035|ref|ZP_06668743.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M809] gi|293526621|ref|ZP_06671306.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M1015] gi|257271775|gb|EEV03913.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 55/2053] gi|257274820|gb|EEV06307.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 65-1322] gi|257278740|gb|EEV09359.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus 68-397] gi|257281465|gb|EEV11602.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus E1410] gi|257284496|gb|EEV14616.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M876] gi|282314058|gb|EFB44450.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C101] gi|282322109|gb|EFB52433.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M899] gi|282325441|gb|EFB55750.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WBG10049] gi|290920693|gb|EFD97756.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M1015] gi|291096078|gb|EFE26339.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291466979|gb|EFF09497.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M809] gi|312438356|gb|ADQ77427.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH60] Length = 1438 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611 >gi|49483427|ref|YP_040651.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MRSA252] gi|282903819|ref|ZP_06311707.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C160] gi|282905582|ref|ZP_06313437.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus Btn1260] gi|282908557|ref|ZP_06316387.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958007|ref|ZP_06375458.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus A017934/97] gi|297591291|ref|ZP_06949929.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8] gi|56748683|sp|Q6GHH1|DPO3_STAAR RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|49241556|emb|CAG40242.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus MRSA252] gi|282327619|gb|EFB57902.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330874|gb|EFB60388.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus Btn1260] gi|282595437|gb|EFC00401.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C160] gi|283790156|gb|EFC28973.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus A017934/97] gi|297576177|gb|EFH94893.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8] gi|315194152|gb|EFU24545.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS00] Length = 1438 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611 >gi|110808209|sp|P0C1P9|DPO3_STAAU RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|1483182|dbj|BAA13160.1| DNA polymerase III [Staphylococcus aureus] Length = 1435 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 478 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 588 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 589 --LNHNEINKKLSNEDAYKRARP 609 >gi|15924254|ref|NP_371788.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50] gi|15926847|ref|NP_374380.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus N315] gi|148267754|ref|YP_001246697.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH9] gi|150393813|ref|YP_001316488.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH1] gi|156979585|ref|YP_001441844.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu3] gi|253315620|ref|ZP_04838833.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006051|ref|ZP_05144652.2| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795680|ref|ZP_05644659.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781] gi|258416083|ref|ZP_05682351.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763] gi|258421666|ref|ZP_05684590.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus A9719] gi|258434822|ref|ZP_05688896.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A9299] gi|258444602|ref|ZP_05692931.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A8115] gi|258447565|ref|ZP_05695709.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6300] gi|258449407|ref|ZP_05697510.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6224] gi|258454786|ref|ZP_05702750.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5937] gi|282892752|ref|ZP_06300987.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A8117] gi|282927606|ref|ZP_06335222.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A10102] gi|296274822|ref|ZP_06857329.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MR1] gi|54036992|sp|P63982|DPO3_STAAN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|54040953|sp|P63981|DPO3_STAAM RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|166217451|sp|A7X1P4|DPO3_STAA1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|13701064|dbj|BAB42359.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus subsp. aureus N315] gi|14247034|dbj|BAB57426.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus Mu50] gi|147740823|gb|ABQ49121.1| DNA polymerase III catalytic subunit, PolC type [Staphylococcus aureus subsp. aureus JH9] gi|149946265|gb|ABR52201.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus JH1] gi|156721720|dbj|BAF78137.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus Mu3] gi|257789652|gb|EEV27992.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781] gi|257839231|gb|EEV63707.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763] gi|257842352|gb|EEV66777.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus A9719] gi|257849183|gb|EEV73165.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A9299] gi|257850095|gb|EEV74048.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A8115] gi|257853756|gb|EEV76715.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6300] gi|257857395|gb|EEV80293.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6224] gi|257863169|gb|EEV85933.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5937] gi|282590609|gb|EFB95686.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A10102] gi|282764749|gb|EFC04874.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A8117] gi|285816946|gb|ADC37433.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981] gi|312829658|emb|CBX34500.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131058|gb|EFT87042.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS03] gi|329727084|gb|EGG63540.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 21172] Length = 1438 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611 >gi|332982461|ref|YP_004463902.1| DNA polymerase III catalytic subunit, PolC type [Mahella australiensis 50-1 BON] gi|332700139|gb|AEE97080.1| DNA polymerase III catalytic subunit, PolC type [Mahella australiensis 50-1 BON] Length = 1427 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 82/201 (40%), Gaps = 5/201 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTGL++ D+IIEIGAV + D F F+ P+ P + L GITD+ Sbjct: 416 VVLDIETTGLNAGTDKIIEIGAVRIKDGKY-KDEFSSFINPH-VPIPPSIVNLTGITDDM 473 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-LS 128 + + P + F + +A +AHNA+FD+GFI Q+ N +P T Sbjct: 474 VSNAPDEGDVLQRFME--FAGDAVLVAHNAQFDMGFIRQHGQKYNLKFANPVLDTLTLAR 531 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + D + + HR+ A + +L K+ G Q Sbjct: 532 QLFKGLKHYKLDTLAHHLHIDMDNHHRAVDDARTAAEILFRCMDKLSEMGCQFLSDLNRV 591 Query: 189 EDRFFKEEKKTVPNISLLKRD 209 + + L+K Sbjct: 592 FGSSISNNSELYHAVILVKNQ 612 >gi|302332870|gb|ADL23063.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus JKD6159] Length = 1438 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 --LNHNEINKKLSNEDAYKRARP 611 >gi|242242547|ref|ZP_04796992.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144] gi|242233974|gb|EES36286.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144] Length = 1442 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 484 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVN---- 595 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 596 ---NHLEINKKLTNEDAYKRARP 615 >gi|237739760|ref|ZP_04570241.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31] gi|229423368|gb|EEO38415.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31] Length = 1449 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 6/191 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL+S ++IIEIGAV++ +R + + P G ++ IT+E Sbjct: 422 FVVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDR-YSQLINP-GISIPYHITEITSITNE 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++P + +F DF + A +AHNA FD+GFI +++ L+ S I Sbjct: 480 QVANQPKIDEVIGKFVDFIGD--AVLVAHNAPFDMGFIKRDIKEYLNIDLENSVIDTLQM 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L L K G+ H A+ DS ++++I + + + + Sbjct: 538 ARDLFPDFKKYGLGDLNKSLGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGIEYLKD 595 Query: 189 EDRFFKEEKKT 199 ++ F+ K Sbjct: 596 INKGFEVNVKK 606 >gi|319401446|gb|EFV89656.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis FRI909] Length = 1438 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVN---- 591 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 592 ---NHLEINKKLTNEDAYKRARP 611 >gi|148255092|ref|YP_001239677.1| hypothetical protein BBta_3691 [Bradyrhizobium sp. BTAi1] gi|146407265|gb|ABQ35771.1| hypothetical protein BBta_3691 [Bradyrhizobium sp. BTAi1] Length = 720 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 2/125 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG S DRI EIGAV++ ++ + + P R + ++L GIT++ Sbjct: 546 YVVVDIETTGSWSSGDRITEIGAVKVRNHQIV-EEWHSLINPQ-RPIPAKIVELTGITNQ 603 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F I F F + N + E + Sbjct: 604 MVRDAPFFHDIADSFIAFMGDGIFVAHNVNFDYGFLSYEYERLERRFRFPKLCTCVGMRR 663 Query: 129 IARRK 133 Sbjct: 664 RYPGH 668 >gi|262066554|ref|ZP_06026166.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC 33693] gi|291379736|gb|EFE87254.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC 33693] Length = 1449 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 6/191 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL+S ++IIEIGAV++ +R + + P G ++ IT+E Sbjct: 422 FVVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDR-YSQLINP-GISIPYHITEITSITNE 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++P + +F +F + A +AHNA FD+GFI +++ L+ S I Sbjct: 480 QVANQPKIDEVIGKFVEFIGD--AVLVAHNAPFDMGFIKRDIKEYLNIDLESSVIDTLQM 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L L K G+ H A+ DS ++++I + + + + Sbjct: 538 ARDLFPDFKKYGLGDLNKSLGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGIEYLKD 595 Query: 189 EDRFFKEEKKT 199 ++ F+ K Sbjct: 596 INKGFEVNVKK 606 >gi|642270|emb|CAA88043.1| DNA polymerase III [Staphylococcus aureus] Length = 1415 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 478 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 588 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 589 --LNHNEINKKLSNEDAYKRARP 609 >gi|295094742|emb|CBK83833.1| DNA polymerase III catalytic subunit, PolC type [Coprococcus sp. ART55/1] Length = 1603 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 7/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL K+++IIEIGAV++ D TF F+ P G + +L I D+ Sbjct: 547 YVVFDIETTGLSKKHNKIIEIGAVKVKDGEVV-DTFSEFINP-GVPIPYQIEQLTSINDD 604 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P F I F +F + +AHNA FD GF+ + + + TLS Sbjct: 605 MVKDAPMFDVIVPRFVEFCGD--DIVVAHNASFDTGFVRMNAEELGLKFDNTVLDTMTLS 662 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + + H A+ D+ + V+ K++ + + + Sbjct: 663 HILLPELGKFTLDRVCKE---LKVVNAHHHRAIDDAEATAKVFFKLLDMLKERDVKTMDD 719 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 720 LNVLGSTSPDAIKKDK 735 >gi|291544892|emb|CBL18001.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp. 18P13] Length = 1444 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 83/168 (49%), Gaps = 6/168 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+FD+ETTGL ++ DR+ EIGA+++ + + +F ++ P R PE L GI + Sbjct: 429 IIFDVETTGLSAERDRLTEIGAIKVKN-MRVADSFHTYVNPE-RPIPPEITDLTGIHEGM 486 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P S EF+ F ++ +AHNA+FD FI+ ID+L + Sbjct: 487 VAEAPKASQALKEFFAF-CGEDPVLVAHNARFDTSFID--AAAGRAGQRYAYAYIDSLVL 543 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + P ++ ++ + + H A D+ +L+ +Y++++ Sbjct: 544 CQAMLPDLAKHKLNVVAKH-LKLGKFDHHRADNDAMMLAKIYLELVGR 590 >gi|300812566|ref|ZP_07092983.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496439|gb|EFK31544.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 1402 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 13/208 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ + ++ + Sbjct: 383 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH---HPLSETTINLTSIT 438 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + N HN +FDVGF++A L+R + + Sbjct: 439 DEMVQAADDEAVVIKEFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEISQPVVDTLEV 498 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 SR+ L+SLC++Y + + H H A D+ + K++ F Sbjct: 499 SRLLHPEQSRHTLDSLCRKYNVALEH--HHRANQDAEATGYLMFKLLD-------AFNDK 549 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + N KR +P + Sbjct: 550 YQEDDLGKMNDYSNGEGYKRARPTHITV 577 >gi|34762810|ref|ZP_00143796.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887512|gb|EAA24596.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 1216 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 6/191 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL+S + IIEIGAV++ +R + + P GR ++ ITDE Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKIKSGRIMDR-YSQLINP-GRPIPYHITEITSITDE 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++P + +F DF + A +AHNA FD+GFI ++++ S I Sbjct: 480 QVANEPKIDKVIGKFVDFVGD--AVLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQM 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L L K G+ H A+ DS ++++I + + + + Sbjct: 538 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLEKYKEKGLEYMKD 595 Query: 189 EDRFFKEEKKT 199 + F+ + Sbjct: 596 INTGFEVNVRK 606 >gi|291484662|dbj|BAI85737.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. natto BEST195] Length = 931 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 101/238 (42%), Gaps = 28/238 (11%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 NK R +V D+ETTG K D+II+I AV + + T R F ++ PN + +L Sbjct: 2 NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPAFIEQLT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+++ ++++ F ++ E + + AHN FD+GF+ EL L + Sbjct: 60 GISNQMVENEQPFEAVAEEVFQLLDGAYFV--AHNIHFDLGFVKYEL-HKAGFQLPDCEV 116 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN- 182 +DT+ ++R P + + + H H A D+ + ++++++ Q+ Sbjct: 117 LDTVELSRIVFPGFEGYKLTELSEE-LQLRHDQPHRADSDAEVTGLIFLEILEKLRQLPY 175 Query: 183 --------------------FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 NE+R + T + ++ + + RI ++E Sbjct: 176 PTLKQLRRLSQHFISDLTHLLDMFINENRHTEIPGYTRFSSFSVREPEAIDVRINEDE 233 >gi|224476387|ref|YP_002633993.1| DNA polymerase III PolC [Staphylococcus carnosus subsp. carnosus TM300] gi|222420994|emb|CAL27808.1| homolog of DNA polymerase III, alpha subunit [Staphylococcus carnosus subsp. carnosus TM300] Length = 1437 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 13/208 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F P+ R S L I+D+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHDGEIIDK-FERFSNPHER-LSDTIKNLTHISDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R I Sbjct: 480 MLVDAPEIDDVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERAGLGNYTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEFGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMLKQVEELGV----- 590 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 K+ +++ N KR +P I Sbjct: 591 --TNHKDINQSLSNEDAYKRARPSHITI 616 >gi|223044235|ref|ZP_03614272.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus capitis SK14] gi|222442385|gb|EEE48493.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus capitis SK14] Length = 1438 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 100/203 (49%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ +++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMIQQMTELGV----- 590 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 --HNHNEINKKLTNEDAYKRARP 611 >gi|288556130|ref|YP_003428065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus pseudofirmus OF4] gi|288547290|gb|ADC51173.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus pseudofirmus OF4] Length = 940 Score = 83.1 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 7/177 (3%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D+ETTG +K DRII+IGAV + + R F F+ P + P +L GI Sbjct: 4 RFIVVDVETTGHSVAKGDRIIQIGAVVIENGEIIER-FASFVNPE-VEIPPFIEELTGIN 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ P+F + E F AHN FD+ F+ + + I + Sbjct: 62 QAMVEHAPTFKELAVELLPLFENVGFV--AHNVPFDLSFLKNQFELIGEKFPKMKCYDTV 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 L L G++ H A D+ + +++++ ++ + Sbjct: 120 ELSRMLLPKEESYKLGHLAFSLGLSHDRP--HQADSDAEVTAEIFLYLLNKLKGLPL 174 >gi|323443912|gb|EGB01523.1| DNA polymerase III PolC [Staphylococcus aureus O46] Length = 1436 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 478 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMQELGV----- 588 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 589 --LNHNEINKKLSNEDAYKRARP 609 >gi|212639526|ref|YP_002316046.1| DNA polymerase III PolC [Anoxybacillus flavithermus WK1] gi|212561006|gb|ACJ34061.1| DNA polymerase III, alpha subunit (gram-positive type) [Anoxybacillus flavithermus WK1] Length = 1430 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 53/197 (26%), Positives = 93/197 (47%), Gaps = 6/197 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + +R F+ F P+ S ++L ITD+ Sbjct: 415 FVVFDVETTGLSAVYDTIIELAAVKVKNGEIIDR-FESFANPH-HPLSATTIELTKITDD 472 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD P + +F+ + ++ +AHNA FD+GF+NA ++IN+ + I Sbjct: 473 MLKDAPDVEEVLEKFYHWIDD--CVLVAHNATFDIGFLNAGFKKINRGKVTNPVIDTLEL 530 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK++ I H A+ D+ + I ++ + + Sbjct: 531 ARYLYPELKNHRLNTLCKKFNIE--LTQHHRAIYDAEATGYLLIHLLKELDEKGIQYMDQ 588 Query: 189 EDRFFKEEKKTVPNISL 205 + KE+ + Sbjct: 589 LNEASKEQGAFQRSRPF 605 >gi|116334989|ref|YP_802484.1| DNA polymerase III epsilon subunit [Candidatus Carsonella ruddii PV] gi|116235270|dbj|BAF35118.1| DNA polymerase III epsilon subunit [Candidatus Carsonella ruddii PV] Length = 181 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 78/168 (46%), Gaps = 3/168 (1%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I D+ETTGL + DRIIEIG VE+++ T R F + P + A +HGI Sbjct: 3 RIIFLDVETTGLFVEHGDRIIEIGCVEVINGHLTGRVFHSYFNPEVKIT-QGAFNVHGIK 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+FL KP F +EF F N + L + I Sbjct: 62 DDFLLLKPMFYEKINEFIGFINNSTIIAHNAKFDINFINKEIYLTNFKIKKIQNYANILD 121 Query: 127 LSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + RK +P +N+LN LC ++ + + + HGAL D+ LL+ + IK Sbjct: 122 SLLLFRKLYPRKKNNLNDLCLKFNLIKNKKRIHGALNDAFLLAVLIIK 169 >gi|160934103|ref|ZP_02081490.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753] gi|156866776|gb|EDO60148.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753] Length = 1451 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTGL + NDRI EIGAV + + T F F+ P R + +L GI D Sbjct: 434 YISFDLETTGLSAANDRITEIGAVRIHNGEIT-DVFNTFVNPE-RPIPAKITELTGINDS 491 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P F +F + +AHNA FD FI A R N D + + Sbjct: 492 MVIDAPKEKEAVEAFLEF-CGKEPVLLAHNAPFDTSFIQAVAARHNLDFSNTYLDTVPMC 550 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 A + + ++ + H A D+ +L+++++ ++ + Sbjct: 551 RAMLPGIKNHKLDTVA---KHLKLAPFNHHRASDDAMVLANIFLVLLQRLQE 599 >gi|187935470|ref|YP_001885466.1| DNA polymerase III PolC [Clostridium botulinum B str. Eklund 17B] gi|187723623|gb|ACD24844.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum B str. Eklund 17B] Length = 1452 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 50/215 (23%), Positives = 86/215 (40%), Gaps = 10/215 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG ND+IIEIGAV++ + F F+ P R + +L I + Sbjct: 439 FVVFDLETTGFSPVNDKIIEIGAVKIKSGEIIDE-FSCFVNPQ-RDIPYKITQLTSIDNN 496 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD +I +F +F + +AHNA FD GFI + + I Sbjct: 497 MVKDADVIENILPKFMEFCED--TVIVAHNAAFDTGFIK---KNCRDLNIRFDIPILDTV 551 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R + + IS + H A+ D+ +D+ ++ +I F+ N Sbjct: 552 TLCRFLYPELKKVKLNIVAKFLGISLENHHRAVDDAKATADI---LLKSFEKIEEDFEIN 608 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + + + + +I + T+ L Sbjct: 609 DLKSLNDLFLSKVDIRKQPTYHIIILAKTQAGLKN 643 >gi|315111548|ref|YP_813210.2| DNA polymerase III, alpha subunit ( type) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 1445 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 13/208 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ + ++ + Sbjct: 426 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH---HPLSETTINLTSIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + N HN +FDVGF++A L+R + + Sbjct: 482 DEMVQAADDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEISQPVVDTLEV 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 SR+ L+SLC++Y + + H H A D+ + K++ F Sbjct: 542 SRLLHPEQSRHTLDSLCRKYNVALEH--HHRANQDAEATGYLMFKLLD-------AFNDK 592 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + N KR +P + Sbjct: 593 YHEDDLGKMNDYSNGEGYKRARPTHITV 620 >gi|193212860|ref|YP_001998813.1| DNA polymerase III subunit epsilon [Chlorobaculum parvum NCIB 8327] gi|193086337|gb|ACF11613.1| DNA polymerase III, epsilon subunit [Chlorobaculum parvum NCIB 8327] Length = 208 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 58/172 (33%), Positives = 82/172 (47%), Gaps = 7/172 (4%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV L + +R FQ + P G + SP GIT+E Sbjct: 10 VVLDFETTGLSPQYGDRAIEIGAVLLENGVIVDR-FQRLMNP-GFRISPFIESYTGITNE 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK +P + + F DF N AHNA FD F++ EL+R + LS Sbjct: 68 MLKVEPPCEEVMAGFSDFIAGHNIV--AHNASFDRRFLDFELKRARRAYEGDCCCSLLLS 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R + + L +L GI S H AL D+ + + +++ M+ Q Sbjct: 126 -RRIYQDAPNHKLQTLVNHAGIP-KVGSFHRALADAEMTAHLWLSMIDRIRQ 175 >gi|16079297|ref|NP_390121.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. 168] gi|221310156|ref|ZP_03592003.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. 168] gi|221314478|ref|ZP_03596283.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319400|ref|ZP_03600694.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. JH642] gi|221323676|ref|ZP_03604970.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. SMY] gi|1706437|sp|P54394|DING_BACSU RecName: Full=Probable ATP-dependent helicase dinG homolog gi|1146243|gb|AAB38451.1| 22.4% identity with Escherichia coli DNA-damage inducible protein ...; putative [Bacillus subtilis subsp. subtilis str. 168] gi|2634658|emb|CAB14156.1| damage inducible ATP-dependent helicase [Bacillus subtilis subsp. subtilis str. 168] Length = 931 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 101/238 (42%), Gaps = 28/238 (11%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 NK R +V D+ETTG K D+II+I AV + + T R F ++ PN + +L Sbjct: 2 NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPAFIEQLT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+++ ++++ F ++ E + + AHN FD+GF+ EL L + Sbjct: 60 GISNQMVENEQPFEAVAEEVFQLLDGAYFV--AHNIHFDLGFVKYEL-HKAGFQLPDCEV 116 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN- 182 +DT+ ++R P + + + H H A D+ + ++++++ Q+ Sbjct: 117 LDTVELSRIVFPGFEGYKLTELSEE-LQLRHDQPHRADSDAEVTGLIFLEILEKLRQLPY 175 Query: 183 --------------------FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 NE+R + T + ++ + + RI ++E Sbjct: 176 PTLKQLRRLSQHFISDLTHLLDMFINENRHTEIPGYTRFSSFSVREPEAIDVRINEDE 233 >gi|190576387|ref|YP_001974232.1| putative exonuclease [Stenotrophomonas maltophilia K279a] gi|190014309|emb|CAQ47956.1| putative exonuclease [Stenotrophomonas maltophilia K279a] Length = 169 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 45/99 (45%), Positives = 56/99 (56%), Gaps = 4/99 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D ETTG+ + R+IEIGAVEL+D T R F +L P RK A ++HGI+ Sbjct: 3 RIVALDTETTGISHRLGHRVIEIGAVELIDGQLTGRQFHTYLQPQ-RKVDWGAQRVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 D L KP FSS +E +F AHNA FDVGF Sbjct: 62 DAMLVGKPLFSSKAAELLEFLRGSEMV--AHNATFDVGF 98 >gi|297588407|ref|ZP_06947050.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516] gi|297573780|gb|EFH92501.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516] Length = 1421 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 7/194 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL + ++I EIGAV+++D + F + P + +L IT+E Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDNQIVDE-FNQLINPE-IPIPEKITELTSITNE 459 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + EF F + IAHNA FD+GFI + +P+ + Sbjct: 460 MVKDMPKIEEVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCLDLRINPIRTYIDTLAFA 517 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 A H + ++ + H A D+ +V+I M+ + F N Sbjct: 518 RALEPHLKNHKLDT---LTKKYNVNLFNHHRACDDARATGEVFICMVKDLEKRGVKFDIN 574 Query: 189 EDRFFKEEKKTVPN 202 ++ + + Sbjct: 575 INKIDSDWSISKRE 588 >gi|20807845|ref|NP_623016.1| DNA polymerase III PolC [Thermoanaerobacter tengcongensis MB4] gi|24418364|sp|Q8RA32|DPO3_THETN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|20516408|gb|AAM24620.1| DNA polymerase III alpha subunit, the Gram-positive type [Thermoanaerobacter tengcongensis MB4] Length = 1401 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL + ND IIEIGAV++ + TF+ F+ P S KL GI + Sbjct: 388 FVVFDIETTGLSNINDEIIEIGAVKIKNKKIV-DTFETFVNPQ-IPISSFITKLTGIDES 445 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + +F + + A +AHNA FDV FI ++ +++ + LS Sbjct: 446 MVKDAPLIEEVLPKFLE--FAKGAVLVAHNANFDVSFIKSKAKKLGLTVENTVLDTLELS 503 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + H A+ D+ ++++IKM+ +I + Sbjct: 504 RHLYQDLKNYKLDT---LAEFFEVKLLHHHRAVEDAKATAEIFIKMLEKLQEIGIKSVSE 560 Query: 189 EDRFFKEEKKTVPNISLL 206 + E + V + + Sbjct: 561 INSVLMEREVDVKKLPVY 578 >gi|254479461|ref|ZP_05092788.1| DNA polymerase III, alpha subunit, Gram-positive type [Carboxydibrachium pacificum DSM 12653] gi|214034604|gb|EEB75351.1| DNA polymerase III, alpha subunit, Gram-positive type [Carboxydibrachium pacificum DSM 12653] Length = 1375 Score = 82.7 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL + ND IIEIGAV++ + TF+ F+ P S KL GI + Sbjct: 388 FVVFDIETTGLSNINDEIIEIGAVKIKNKKIV-DTFETFVNPQ-IPISSFITKLTGIDES 445 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + +F + + A +AHNA FDV FI ++ +++ + LS Sbjct: 446 MVKDAPLIEEVLPKFLE--FAKGAVLVAHNANFDVSFIKSKAKKLGLTVENTVLDTLELS 503 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + H A+ D+ ++++IKM+ +I + Sbjct: 504 RHLYQDLKNYKLDT---LAEFFEVKLLHHHRAVEDAKATAEIFIKMLEKLQEIGIKSVSE 560 Query: 189 EDRFFKEEKKTVPNISLL 206 + E + V + + Sbjct: 561 INSVLMEREVDVKKLPVY 578 >gi|254302688|ref|ZP_04970046.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322880|gb|EDK88130.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 1454 Score = 82.7 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 6/191 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL+S + IIEIGAV++ +R + + P GR ++ ITDE Sbjct: 427 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEITSITDE 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++P + +F DF + A +AHNA FD+GFI ++++ L S I Sbjct: 485 QVANEPKIDEVIGKFIDFVGD--AVLVAHNAPFDMGFIKRDVKKYLNIDLQSSVIDTLQM 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L L K G+ H A+ DS ++++I + + + + Sbjct: 543 ARDLFPDLKKYGLGDLNKTLGLA--LEKHHRAVDDSQATANMFIIFLDKYKEKGLEYIKD 600 Query: 189 EDRFFKEEKKT 199 + F+ K Sbjct: 601 INVGFEVNVKK 611 >gi|323701859|ref|ZP_08113529.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM 574] gi|323533163|gb|EGB23032.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM 574] Length = 1421 Score = 82.7 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 9/222 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + D IIEIGAV+ ++ + +R F + P+ ++ E KL GIT + Sbjct: 409 YVVLDFETTGFSPQTDEIIEIGAVKFINGMEVDR-FGTLVKPD-KEIPFEVSKLTGITLD 466 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + +F + A +AHNA FD+ F+ ++ + + + + Sbjct: 467 MVKDAPDARQALAALREFIGD--AVLVAHNAAFDLSFLKVGFRKYLQVEVTNQVVDTLGT 524 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV---GGSQINFGF 185 + L++L K + I + H A+ D+ ++ ++ + Sbjct: 525 ARVLLPHLKNHKLDTLVKEF--KIELANHHRAVDDAAATGKLWQVLLTKAVEQGAQDLAA 582 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 + + +K ++++L +D+ + + H K Sbjct: 583 LSQLGQGVSTDKLRSRHVTILVKDQVGLKNLYQLISLSHLKY 624 >gi|296333022|ref|ZP_06875479.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674874|ref|YP_003866546.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. spizizenii str. W23] gi|296149873|gb|EFG90765.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413118|gb|ADM38237.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. spizizenii str. W23] Length = 954 Score = 82.7 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 7/181 (3%) Query: 2 IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 I NK R +V D+ETTG K D+II+I AV + + T R F ++ PN + Sbjct: 22 ILMNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPAFIE 79 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GI+++ ++ + F ++ E + + AHN FD+GF+ EL L Sbjct: 80 QLTGISNQMVEHEQPFEAVAEEVFHLLDGAYFV--AHNIHFDLGFVKYEL-HKAGFHLPD 136 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DT+ ++R P + + + H H A D+ + ++++++ Q Sbjct: 137 CEVLDTVELSRIVFPGFEGYKLTELSEE-LQLRHDQPHRADSDAEVTGLIFLEILEKLRQ 195 Query: 181 I 181 + Sbjct: 196 L 196 >gi|317471587|ref|ZP_07930931.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA] gi|316900902|gb|EFV22872.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA] Length = 1478 Score = 82.7 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 8/190 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG +S+ DRIIEIGAV+++ T TF F+ P + +L ITDE Sbjct: 452 FVVFDIETTGFNSQTDRIIEIGAVKVIAGEIT-ETFSEFINPQ-IPIPFKITQLTTITDE 509 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + ++ F +F + + +AHNA FD GFI+ +R++ D LS Sbjct: 510 MVMNADTIDAVLPRFLEFCGD--SVLVAHNAGFDTGFIHENAKRLDLDFHPTIVDTLGLS 567 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-FGFKT 187 + H + N + I + H A+ D+ ++IK + + F Sbjct: 568 RSLMTHLAKFTLDN---LCKNLNIKLETHHRAVDDATATGKIFIKFVQMLEEKEIFDLDQ 624 Query: 188 NEDRFFKEEK 197 + E Sbjct: 625 VNEFVAGSED 634 >gi|266622988|ref|ZP_06115923.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] gi|288865254|gb|EFC97552.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] Length = 595 Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + +RIIEIGAV++++ T+R F F+ P+ E +L I D Sbjct: 523 YVVFDIETTGFSPEKNRIIEIGAVKVVNGVITDR-FSTFVNPD-VPIPFEIEQLTSINDN 580 Query: 69 FLKDKPSF 76 + P Sbjct: 581 MVLSYPKI 588 >gi|314933443|ref|ZP_07840808.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus caprae C87] gi|313653593|gb|EFS17350.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus caprae C87] Length = 1442 Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 484 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMIQQMKELGV----- 594 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 595 --LNHLEINKKLTNEDAYKRARP 615 >gi|126729411|ref|ZP_01745225.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Sagittula stellata E-37] gi|126710401|gb|EBA09453.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Sagittula stellata E-37] Length = 468 Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 5/166 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL D I++IGAV +++ + P GR P + K+HG+TD Sbjct: 278 VLDTETTGLLPHKDEIVQIGAVRIVNGRIVPGERMDQLVNP-GRPIPPASSKVHGVTDAM 336 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P + F +++ +AHNA FD+ F++ R+ + P LS Sbjct: 337 VAGAPGIAEAGRRFHT--FARDSVIVAHNAPFDMAFLHRHKTRMGVEWTHPILDTVLLS- 393 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A S + L++LC R +TI +H AL D+ ++V+ +M+ Sbjct: 394 AVLFGASQTHTLDALCDRLAVTIPPNLRHTALGDAQATAEVFGRML 439 >gi|295398912|ref|ZP_06808894.1| DnaQ family exonuclease/DinG family helicase [Geobacillus thermoglucosidasius C56-YS93] gi|294978378|gb|EFG53974.1| DnaQ family exonuclease/DinG family helicase [Geobacillus thermoglucosidasius C56-YS93] Length = 921 Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 7/177 (3%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++ D+ETTG + K DRII++G V + + R F F P R P +L I Sbjct: 4 RFVIMDLETTGNVPKKGDRIIQLGMVVVENGQIIER-FSSFFNPE-RDIPPFVQQLTNIN 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ + D P F+ ++ D + AHN FD+ F+ EL P I Sbjct: 62 EQMVADAPVFAEEAAKVVDMLQQSYFV--AHNVSFDLQFLQEELHMAGFPPFSGPTIDTV 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K I H A D+ + + ++I ++ Q+ Sbjct: 120 ELARIVFPDAESYKLADLAKLLCIAH--DQPHHADSDAEVTAKLFIALLDRLRQLPL 174 >gi|312110481|ref|YP_003988797.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y4.1MC1] gi|311215582|gb|ADP74186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y4.1MC1] Length = 921 Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 7/177 (3%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++ D+ETTG + K DRII++G V + + R F F P R P +L I Sbjct: 4 RFVIMDLETTGNVPKKGDRIIQLGMVVVENGQIIER-FSSFFNPE-RDIPPFVQQLTNIN 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ + D P F+ ++ D + AHN FD+ F+ EL P I Sbjct: 62 EQMVADAPVFAEEAAKVVDMLQQSYFV--AHNVSFDLQFLQEELHMAGFPPFSGPTIDTV 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K I H A D+ + + ++I ++ Q+ Sbjct: 120 ELARIVFPDAESYKLADLAKLLCIAH--DQPHHADSDAEVTAKLFIALLDRLRQLPL 174 >gi|284048335|ref|YP_003398674.1| DNA polymerase III, epsilon subunit [Acidaminococcus fermentans DSM 20731] gi|283952556|gb|ADB47359.1| DNA polymerase III, epsilon subunit [Acidaminococcus fermentans DSM 20731] Length = 223 Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 9/195 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP----NGRKNSPEALKLHG 64 +V D+ETTGLD + D+IIEIGA+E+ + RTF L P G+ SP +L G Sbjct: 25 YVVVDLETTGLDPERDQIIEIGALEVTAGKR-GRTFSTLLQPRTPLEGQYVSPFITRLTG 83 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+E L P F F + +N FD+GF+ + Q PL + Sbjct: 84 ITNEMLAAAPQPRQALEAFGKFLGS--RVAVGYNVGFDMGFLQQQFQDQLYRPLANDWVD 141 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + LN+L Y + ++ H AL D + K+ + Sbjct: 142 VLPMAQTLFPLWDHHRLNNLAAWYHVE--NKEAHRALSDVETTETCFRKLKEDAGRQYPS 199 Query: 185 FKTNEDRFFKEEKKT 199 + ++ ++ K Sbjct: 200 LEDFLEKVRQKLNKK 214 >gi|194367724|ref|YP_002030334.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia R551-3] gi|194350528|gb|ACF53651.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia R551-3] Length = 169 Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 46/99 (46%), Positives = 56/99 (56%), Gaps = 4/99 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D ETTG+ + R+IEIGAVEL+D T R F +L P RK A ++HGI+ Sbjct: 3 RIVALDTETTGISHRLGHRVIEIGAVELIDGQLTGRQFHTYLQPQ-RKVDWGAQRVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 D L KP FSS +E DF AHNA FDVGF Sbjct: 62 DAMLVGKPLFSSKAAELLDFLRGSEMV--AHNATFDVGF 98 >gi|116093619|gb|ABJ58772.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 1411 Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 13/208 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ + ++ + Sbjct: 392 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH---HPLSETTINLTSIT 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + N HN +FDVGF++A L+R + + Sbjct: 448 DEMVQAADDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEISQPVVDTLEV 507 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 SR+ L+SLC++Y + + H H A D+ + K++ F Sbjct: 508 SRLLHPEQSRHTLDSLCRKYNVALEH--HHRANQDAEATGYLMFKLLD-------AFNDK 558 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + N KR +P + Sbjct: 559 YHEDDLGKMNDYSNGEGYKRARPTHITV 586 >gi|99078640|ref|YP_611898.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040] gi|99035778|gb|ABF62636.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040] Length = 479 Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 5/169 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +VFD ETTGL D I+E+ A +L+ F+ ++ P GR + K+HG+ Sbjct: 272 NFVVFDTETTGLSVTKDAIVELAAARVLNGRILDGEVFETYVDP-GRPIPAASTKIHGVR 330 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + P ++ F D Q+A +AHNA FD+G + + + P Sbjct: 331 DADVAQSPRIEAVIPAFHD--FAQSAVLVAHNAPFDIGLLRQQEVQTGCSWDHPVVDTVL 388 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 LS S+ + L++LC R I I R +H A D+ ++ I+++ Sbjct: 389 LSAL-VFGISADHSLDALCSRLSIEIPARHRHTAKGDARATAEALIRLL 436 >gi|15643342|ref|NP_228386.1| DNA polymerase III PolC [Thermotoga maritima MSB8] gi|6225287|sp|Q9ZHF6|DPO3_THEMA RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|4981093|gb|AAD35661.1|AE001732_6 DNA polymerase III, alpha subunit [Thermotoga maritima MSB8] gi|3930535|gb|AAC80438.1| DNA polymerase III [Thermotoga maritima] Length = 1367 Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 7/189 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGLD + D IIEIGAV++ + + + P R+ S ++ ++ GIT E Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDE-YHTLIKP-SREISRKSSEITGITQE 415 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++K S + EF F + + +AHNA FD F+ ++++ IDTL+ Sbjct: 416 MLENKRSIEEVLPEFLGFLED--SIIVAHNANFDYRFLRLWIKKVMGLD-WERPYIDTLA 472 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +A+ L+S+ ++ G+ H AL D+ + + V+++ + +I + Sbjct: 473 LAKSLLKLRSYSLDSVVEKLGLG--PFRHHRALDDARVTAQVFLRFVEMMKKIGITKLSE 530 Query: 189 EDRFFKEEK 197 ++ Sbjct: 531 MEKLKDTID 539 >gi|326204061|ref|ZP_08193922.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM 2782] gi|325985828|gb|EGD46663.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM 2782] Length = 1433 Score = 82.3 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 7/172 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL+ D+I EIGAV++ + +R F F+ P G +KL GITD+ Sbjct: 422 FVVFDIETTGLNPHQDKITEIGAVKVRNGQIVDR-FSAFVNP-GVSIPSFIVKLTGITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + +EF +F + +AHNA FDVGFI + + + + IDTL Sbjct: 480 MVKDAPPVEQVLNEFMEFIQG--SVLVAHNANFDVGFIKQNAKLMGEK--VKNPYIDTLE 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + R+ P ++ ++ + I + H A+ DS + +++ + + Sbjct: 536 LCRKMFPELGRYKLNIVAKH-LKIELENHHRAVDDSMATAKIFMHCINILKE 586 >gi|254463814|ref|ZP_05077225.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacterales bacterium Y4I] gi|206684722|gb|EDZ45204.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacterales bacterium Y4I] Length = 469 Score = 82.3 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 5/177 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL D I++IGA+ ++ + F + P G + K+HGI+D Sbjct: 277 YVVFDTETTGLLPHKDEIVQIGALRVVRNRIVAGEQFGTLVDP-GTPIPAASTKVHGISD 335 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P F +A +AHNA FD+ F+ +R P L Sbjct: 336 AMVQGAPDIGQAARAFHR--FASDAVIVAHNAPFDMAFLRRHAKRAGVSWDQPVLDTVLL 393 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 S A S + L++LC+R +TI +H A+ D+ ++V+ KM+ G Sbjct: 394 S-AVLFGASQSHTLDALCERLEVTIPPALRHTAMGDAQATAEVFCKMLPMLEARGLG 449 >gi|254502460|ref|ZP_05114611.1| exonuclease family [Labrenzia alexandrii DFL-11] gi|222438531|gb|EEE45210.1| exonuclease family [Labrenzia alexandrii DFL-11] Length = 471 Score = 82.3 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 5/179 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69 VFD ETTGL D I++IGAV +++ + P GR P + K+HGI+D Sbjct: 281 VFDTETTGLMPNKDDIVQIGAVRVVNGRMVPGERIDQLVNP-GRPIPPASSKVHGISDTM 339 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P ++F + + + +AHNA FD+ F+ + + P LS Sbjct: 340 VADAPQPLEAVADFHE--FARESVIVAHNAPFDLAFLQKYGKVAGLEWPHPILDTVLLS- 396 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 A + + L++LC+R I I +H AL D+ ++ K++ + F + Sbjct: 397 AVVFGSNEVHTLDALCERLCIDIRPEVRHTALGDAEATAEALCKLLPILTSKGFETFGD 455 >gi|308174031|ref|YP_003920736.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens DSM 7] gi|307606895|emb|CBI43266.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens DSM 7] gi|328552843|gb|AEB23335.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus amyloliquefaciens TA208] gi|328912360|gb|AEB63956.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens LL3] Length = 928 Score = 82.3 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 7/180 (3%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 NK R +V D+ETTG K D+II+I AV + + T R F ++ PN + P +L Sbjct: 2 NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-QDIPPFIEQLT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+ ++++ F ++ E + + AHN FD+GF+ EL + D + Sbjct: 60 GISTGMVENELPFEAVAEEIFHLLDGAYFV--AHNIHFDLGFVRHELSEAGYELTDCEVL 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 L LC I H A D+ + +++ ++ + Sbjct: 118 DTVELSRIVFPGFEGYKLGELCAELNIVHDRP--HRADSDAEVTGLIFLDILHKLKHLPL 175 >gi|239636258|ref|ZP_04677260.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus warneri L37603] gi|239597613|gb|EEQ80108.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus warneri L37603] Length = 1438 Score = 82.3 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ K S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPH-EKLSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLTDAPEIEDVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTDYGKHGLNFLAKKYGVD--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 + + + N KR +P Sbjct: 591 --TNHIDINQKLSNEDAYKRARP 611 >gi|330685683|gb|EGG97324.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU121] Length = 1438 Score = 82.3 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ K S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPH-EKLSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + ++F ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLTDAPEIEDVLTDFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVD--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 + + + N KR +P Sbjct: 591 --TNHIDINQKLSNEDAYKRARP 611 >gi|225375372|ref|ZP_03752593.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM 16841] gi|225212861|gb|EEG95215.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM 16841] Length = 1512 Score = 82.3 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 7/192 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG ++IIEIGAV+++ T+R F F+ P +L I D+ Sbjct: 489 FVVFDLETTGFSPDKNKIIEIGAVKVVGGVITDR-FSTFVNPE-VPIPFRIEELTSIKDD 546 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P I EF F A +AHNA+FD+ FI + + L+ Sbjct: 547 MVIDAPKIEEILPEFMKFCEG--AIMVAHNAEFDMSFIKKNCKDQGIEREFTIIDTVALA 604 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + +S + H A+ D+ +++++K + + + Sbjct: 605 RILLPNLNRFKLDTVAKA---LNVSLENHHRAVDDAACTAEIFVKFIEMLKERGMENLDD 661 Query: 189 EDRFFKEEKKTV 200 + +TV Sbjct: 662 VNHMVSTSPETV 673 >gi|148269487|ref|YP_001243947.1| DNA polymerase III PolC [Thermotoga petrophila RKU-1] gi|281411795|ref|YP_003345874.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10] gi|166217457|sp|A5IJJ8|DPO3_THEP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|147735031|gb|ABQ46371.1| DNA polymerase III catalytic subunit, PolC type [Thermotoga petrophila RKU-1] gi|281372898|gb|ADA66460.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10] Length = 1367 Score = 82.3 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 7/189 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGLD + D IIEIGAV++ D + + + P R+ S + ++ GIT E Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVDE-YHTLIKP-SREISRRSSEITGITQE 415 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++K S + EF F +N+ +AHNA FD F+ ++++ IDTL+ Sbjct: 416 MLENKRSIEEVLPEFLGFL--ENSIIVAHNANFDYRFLRLWIKKVMGLD-WERPYIDTLA 472 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +A+ L+S+ ++ G+ H AL D+ + + V+++ + +I + Sbjct: 473 LAKSLLKMRSYSLDSVVEKLGLG--PFRHHRALDDARVTAQVFLRFVEMMKKIGITKLSE 530 Query: 189 EDRFFKEEK 197 + Sbjct: 531 IENLKDTID 539 >gi|228982633|ref|ZP_04142892.1| DNA polymerase III PolC [Bacillus thuringiensis Bt407] gi|228776816|gb|EEM25124.1| DNA polymerase III PolC [Bacillus thuringiensis Bt407] Length = 286 Score = 81.9 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 81/211 (38%), Gaps = 8/211 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +V DIETT K RI EIGAV+ +D ++ + + P + KL GIT Sbjct: 18 NFVVLDIETTAFSPVKGGRITEIGAVKYIDGKVVDK-YSQLINPEMK-IPANITKLTGIT 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ ++ KP + + F F + +AHNAKFD + Sbjct: 76 NDMVQGKPVYGQVLPVFQQFIDG--FLVVAHNAKFDWNRFLLFYFEKVGIHPKNEVLDSV 133 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + L+ C +G ++++H A D+ +++ + + Sbjct: 134 AVFQHFCPNKGKYKLDDFCTTFGYL--NKNRHRAYEDAEATGYCLLELKRRFASEIPEVE 191 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + +K + P I +KR K +++ Sbjct: 192 EEPIKVQSVQKSSQPEI-FVKRVKYWEKKVS 221 >gi|229824076|ref|ZP_04450145.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271] gi|229786430|gb|EEP22544.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271] Length = 1435 Score = 81.9 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL S DRIIE+ AV++ + TF+ F+ P G S +L GITD Sbjct: 420 YVVFDVETTGLSSVYDRIIELAAVKMRNGEVI-DTFEAFINP-GYHLSAMITELTGITDA 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + + + F + ++ +AHNA FD+GF+N R+ D I Sbjct: 478 MLADAPPEAEVMARFAE--FSKDTILVAHNASFDMGFLNKTYARLGMPVPDQPVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + LN L K YG+T H A+ DS V K++ + Sbjct: 536 SRLVNPDMRSHRLNVLAKHYGVT--LEQHHRAVYDSETTGYVCYKLLDQAKE 585 >gi|166032729|ref|ZP_02235558.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC 27755] gi|166027086|gb|EDR45843.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC 27755] Length = 1521 Score = 81.9 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 4/209 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG S D+IIEIGAV++ + T++ + F+ P +L ITDE Sbjct: 478 YVVFDLETTGFSSAKDKIIEIGAVKVENGEITDK-YSTFVNPK-IPIPFRITQLTSITDE 535 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P +I +F F + A +AHNA FDV FI ++ +P S L+ Sbjct: 536 MVMESPEIETILPQFLKFVGD--AVLVAHNASFDVSFIEENCRQQGIEPDFTSVDTVGLA 593 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S H + + +I+M+ + Sbjct: 594 RVLLPTLSKFKLNVVAKALNISQEHHHRAVDDARVTAEIYVKFIQMLEERGIETLDQMNH 653 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 E + +P+ ++ K R+ Sbjct: 654 FGAHNAEAIRKMPSYHVIVLAKNDIGRVN 682 >gi|314936575|ref|ZP_07843922.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis subsp. hominis C80] gi|313655194|gb|EFS18939.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis subsp. hominis C80] Length = 1438 Score = 81.9 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 13/208 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F P+ K S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDK-FERFSNPH-EKLSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVA---- 591 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 K+ K + N KR +P + Sbjct: 592 ---NHKDINKKLSNEDAYKRARPTHVTL 616 >gi|170288161|ref|YP_001738399.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2] gi|170175664|gb|ACB08716.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2] Length = 1367 Score = 81.9 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 7/189 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGLD + D IIEIGAV++ D + + + P R+ S + ++ GIT E Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVDE-YHTLIKP-SREISRRSSEITGITQE 415 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++K S + EF F +N+ +AHNA FD F+ ++++ IDTL+ Sbjct: 416 MLENKRSIEEVLPEFLGFL--ENSIIVAHNANFDYRFLRLWIKKVMGLD-WERPYIDTLA 472 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +A+ L+S+ ++ G+ H AL D+ + + V+++ + +I + Sbjct: 473 LAKSLLKMRSYSLDSVVEKLGLG--PFRHHRALDDARVTAQVFLRFVEMMKKIGITKLSE 530 Query: 189 EDRFFKEEK 197 + Sbjct: 531 IENLKDTID 539 >gi|320160945|ref|YP_004174169.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea thermophila UNI-1] gi|319994798|dbj|BAJ63569.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea thermophila UNI-1] Length = 934 Score = 81.9 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 16/228 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTGLD + D IIEIGAV + + + P + +L GIT++ Sbjct: 7 YVAIDIETTGLDPEKDCIIEIGAVRFSNRRVEAE-WSSLIKP-TKNIPSFITQLTGITND 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+ + + F N + HN +FD+ F+ + L + +IDT Sbjct: 65 MVRKAPTIQDVIGDLAHFV--GNCPIVGHNIRFDLSFLQKQH------ILWNNHVIDTYE 116 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +A P++ + + + I + H AL D+ + ++I ++ S++ Sbjct: 117 LASVLLPTASRYNLGVLAQS-LGILLPATHRALDDARVTHALFIALLEKASELPVDLLNE 175 Query: 189 ---EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + V L ++ + + + +H + L + Sbjct: 176 IVQLSEPLNWDAYIVFQDVLNRKSAFVPAKPSG--RRQHQNLFEPLSE 221 >gi|228475024|ref|ZP_04059752.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis SK119] gi|228271009|gb|EEK12397.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis SK119] Length = 1438 Score = 81.9 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 13/208 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F PN K S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDK-FERFSNPN-EKLSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGVA---- 591 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 K+ K + N KR +P + Sbjct: 592 ---NHKDINKKLSNEDAYKRARPTHVTL 616 >gi|323493701|ref|ZP_08098821.1| DNA polymerase III, alpha subunit [Vibrio brasiliensis LMG 20546] gi|323312041|gb|EGA65185.1| DNA polymerase III, alpha subunit [Vibrio brasiliensis LMG 20546] Length = 204 Score = 81.9 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 84/177 (47%), Gaps = 9/177 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL DR IEIGAV+L++ TFQ + P G + S GIT+ Sbjct: 8 IVLDFETTGLSPNMGDRAIEIGAVKLINGEVV-DTFQQLMNP-GFRVSSFIEGYTGITNA 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L + PS + S+F F + N +AHNA FD F++AE RINKD L D + + Sbjct: 66 MLANAPSCEEVMSQFHSFIADDN--LVAHNASFDKRFLDAEFDRINKDYLGDFACSLLVS 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + PS + K+ + H AL DS + + +++ M+ Q Sbjct: 124 RRLNQDAPSHKLGDLVRYKQI---DNDGVFHRALADSQMTAKLWLLMLEDIEQRGIS 177 >gi|291166154|gb|EFE28200.1| DNA polymerase III, alpha subunit, Gram-positive type [Filifactor alocis ATCC 35896] Length = 1407 Score = 81.9 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 98/239 (41%), Gaps = 28/239 (11%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG S ND IIEIGAV++ + +R F F+ P R+ +L IT+E Sbjct: 390 FVVFDIETTGFSSINDAIIEIGAVKIKNREIIDR-FSEFVNPK-REIPYHITELTSITNE 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++ + + F + +++ ++AHN+ FD FI +R++ + LS Sbjct: 448 MVCNEDTIEEVLPRFME--FSKDSVFVAHNSDFDTSFIKENCKRLDLLYDRIAIDTVELS 505 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GFKT 187 A K + IS + H A+ D+ + +++K + + Sbjct: 506 RALLTDLKRHKLNVVAKK---LGISLENHHRAVDDAEATAQIFLKFLTMIEECGVTTLAE 562 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF--------------------TRITKEELDEHDK 226 + K T+ + S+ + L RI K EL EH + Sbjct: 563 VNQKITKTNIDTIRDKSITIFAQNLVGLKNLYKLISFSHIKHFYRIPRILKSELVEHRE 621 >gi|146341316|ref|YP_001206364.1| DNA-directed DNA polymerase [Bradyrhizobium sp. ORS278] gi|146194122|emb|CAL78141.1| hypothetical protein; putative DNA-directed DNA polymerase [Bradyrhizobium sp. ORS278] Length = 737 Score = 81.9 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 2/125 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG S DRI EIGAV++ ++ + + P R + ++L GIT++ Sbjct: 563 YVVVDIETTGSWSSGDRITEIGAVKVRNHQLV-EQWHSLINPQ-RPIPAKIVELTGITNQ 620 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F I F F + N + E + Sbjct: 621 MVRDAPVFHEIADSFMAFMGDGIFVAHNVNFDYGFLSSEFERLERRFRFPKLCTCVGMRR 680 Query: 129 IARRK 133 Sbjct: 681 RYPGH 685 >gi|182417583|ref|ZP_02948906.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum 5521] gi|237668138|ref|ZP_04528122.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378596|gb|EDT76124.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum 5521] gi|237656486|gb|EEP54042.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1450 Score = 81.9 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 5/167 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG ND+IIEIGAV++ + + F F+ P R +L I ++ Sbjct: 437 YVVFDIETTGFSPVNDKIIEIGAVKIKNGEVIDN-FSHFVNPE-RSIPYVITELTSINND 494 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127 ++D + + +F +F + + +AHNA FD GFI + + Sbjct: 495 MVRDAETIEILLPKFMEFCAD--SVLVAHNAAFDTGFIKKNCRDLGIDFNYSIMDTVPLA 552 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +L + + HR+ A + +L + + Sbjct: 553 RFLCPDLKKVKLNLVAKHLGISLDNHHRAVDDAKCTAEILLKFFTML 599 >gi|73662813|ref|YP_301594.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642441|sp|Q49X49|DPO3_STAS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|72495328|dbj|BAE18649.1| DNA polymerase III alpha chain PolC-type [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 1438 Score = 81.9 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F P+ R S L I+D+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVKDGEIIDK-FERFSNPHER-LSETIKNLTHISDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF + + A ++AHNA FD+GFI+ + + I Sbjct: 480 MLVDAPEIEEVLTEFKSWVGD--AIFVAHNASFDMGFIDTGYEHVGIGASTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ + Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYMFIKMLKQ-------LEAL 588 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 ++ ++ N KR +P Sbjct: 589 GVHNHQDINTSLSNEDAYKRARP 611 >gi|220931624|ref|YP_002508532.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168] gi|219992934|gb|ACL69537.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168] Length = 1397 Score = 81.9 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL+ + IIEIGAV++ + F F+ P G + +L GIT+E Sbjct: 385 FVVFDLETTGLNKFKNEIIEIGAVKVKSGKVIDE-FSSFVKP-GESIPNKITELTGITNE 442 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + +F +F + + +AHNA FD GF+ L++ + + + Sbjct: 443 MVSRAPDIEGVIGDFLEFIDG--SILVAHNADFDYGFLQVALKKTGQGDISYPVLDTLTL 500 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 S + LN+L + + + H A+ D+ S+++I + Sbjct: 501 SRALLPDLSNHKLNTLARHLNVR--LDNHHRAVEDARATSEIFINFLSNIKNEGIE 554 >gi|56696683|ref|YP_167044.1| DNA polymerase III epsilon subunit family exonuclease [Ruegeria pomeroyi DSS-3] gi|56678420|gb|AAV95086.1| exonuclease, DNA polymerase III, epsilon subunit family [Ruegeria pomeroyi DSS-3] Length = 470 Score = 81.9 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 5/177 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 VFD ETTGL D I++IGAV ++ + P GR P + ++HG++D Sbjct: 278 FAVFDTETTGLLPHKDEIVQIGAVRVVKGRIVPGERIDQLVDP-GRPIPPASTRVHGVSD 336 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P + +F ++A +AHNA FD+ F+ R D P L Sbjct: 337 AMVAGAPDIVAAARQFHQ--FARDAVIVAHNAPFDIAFLRRHGPRCGLDWDHPILDTVLL 394 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 S A S + L++LC R G+TI +H AL D+ ++V +M+ Sbjct: 395 S-AVLFGASETHTLDALCDRLGVTIPAPLRHTALGDAQATAEVLCRMLPMLRARGLD 450 >gi|331001986|ref|ZP_08325506.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167] gi|330411782|gb|EGG91187.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167] Length = 1480 Score = 81.5 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 52/197 (26%), Positives = 86/197 (43%), Gaps = 7/197 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTG +KND I EIGAV+++ +R F F+ P R + +L I+D Sbjct: 456 FIVFDIETTGFSAKNDAITEIGAVKVVKGEIVDR-FSTFVNP-RRPIPFKIEELTHISDA 513 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P I +F DF + +AHNA FD GFI ++INK+ ++ Sbjct: 514 MVMNAPFIEDILPKFLDFCED--YIIVAHNAGFDTGFIRENAKKINKEYNPSIIDTVAMA 571 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R L+++CK I+ H A+ D+ + ++++ + + Sbjct: 572 RLLLPE-LNRFKLDTVCKALNIS--LEGHHRAVNDAEATAQIWVEFIKRLKDKGISKLSE 628 Query: 189 EDRFFKEEKKTVPNISL 205 + V Sbjct: 629 VASLGETNADIVKKTKY 645 >gi|256112396|ref|ZP_05453317.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] Length = 153 Score = 81.5 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 62/149 (41%), Positives = 92/149 (61%), Gaps = 2/149 (1%) Query: 95 IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154 +AHNA FD+GFINAEL R+++ + I+DTL++ARRKHP N L++LCKRYGI SH Sbjct: 6 VAHNAMFDLGFINAELARLDQAEITSEHIVDTLALARRKHPIGPNSLDALCKRYGIDNSH 65 Query: 155 RSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLF 213 R+ HGALLD+ +L++VYI+++ G Q G + + + L R +PL Sbjct: 66 RTLHGALLDAQILAEVYIELIG-GKQTALGLTMESGSAGGDSRGNGSAPVVLAARPRPLP 124 Query: 214 TRITKEELDEHDKTIQTLGKNAIWDRYIS 242 RI+ E H ++ +G A+W +Y+S Sbjct: 125 PRISDAERAAHAALVEKMGDKAVWKKYLS 153 >gi|153814386|ref|ZP_01967054.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756] gi|145848782|gb|EDK25700.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756] Length = 1459 Score = 81.5 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 82/196 (41%), Gaps = 7/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTG S D IIEIGAV++ D T+R F F+ P R E L ITDE Sbjct: 422 YIVFDIETTGFSSIKDAIIEIGAVKVTDGKITDR-FSTFVNPK-RPIPFEITNLTSITDE 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + +F + + +AHNA FDVGFI + + L+ Sbjct: 480 MVMDSPTIDVVLPQFLE--FAGDGVLVAHNAGFDVGFIEQNCRSLGLSDEFVYLDTVALA 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + IS + H A+ D+ +++++K + G Sbjct: 538 RVLLPTLSKYKLNIVAKA---LNISLENHHRAVDDAEATAEIFVKFTEMLKKDQVGTLKE 594 Query: 189 EDRFFKEEKKTVPNIS 204 +R+ + + Sbjct: 595 VNRYGDRNVNAIRKMP 610 >gi|164688523|ref|ZP_02212551.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM 16795] gi|164602936|gb|EDQ96401.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM 16795] Length = 1432 Score = 81.5 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 4/216 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG +KND+I EIGAV++ ++ +R F + P + S + +L GIT++ Sbjct: 418 FVVFDLETTGFSNKNDKITEIGAVKVKNFEIVDR-FNELINPE-KDISYKVQELTGITND 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KDKP+ I +F +F + + +AHNA+FD+GFIN + + +N + + S L+ Sbjct: 476 LIKDKPTIEEILPKFMEFVGD--SVLVAHNAEFDIGFINQKCKEMNIEFKNKSVDTLMLA 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 H N + +H + + ++ M+ Sbjct: 534 RILLPHLKRFKLNNLTKELGVPLHNHHRAVDDAAATAQIFIKFLDMLQKKGAKKLSDVNE 593 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224 K +I+L+ ++ + K D H Sbjct: 594 VLGGIDYTKLKTKHITLIAQNLVGVKNLYKIVSDAH 629 >gi|157961820|ref|YP_001501854.1| DNA polymerase III subunit epsilon [Shewanella pealeana ATCC 700345] gi|157846820|gb|ABV87319.1| DNA polymerase III, epsilon subunit [Shewanella pealeana ATCC 700345] Length = 215 Score = 81.5 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 60/198 (30%), Positives = 88/198 (44%), Gaps = 15/198 (7%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL + DR IEIGAV L D +R FQ + P G + S GI++ Sbjct: 19 IVLDFETTGLSPTQGDRAIEIGAVMLKDGKVVDR-FQQLMNP-GFRISGFIESYTGISNA 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L D PS + ++F DF + N +AHNA FD F++AEL+RIN L + + Sbjct: 77 MLADAPSCEEVMAQFADFIGDYN--LVAHNASFDQRFLDAELKRINCHYLGQFACSMLIA 134 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ------I 181 + P+ + K H AL DS + + +++ M+ Q Sbjct: 135 RRLYQAAPNHKLGSLVSYKNI---QHDGVFHRALADSEMTASLWLAMLEDLQQDYQLHSP 191 Query: 182 NFGFKTNEDRFFKEEKKT 199 +FG + + K Sbjct: 192 DFGLLQSIAKQTKANINQ 209 >gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL B-59395] gi|326198642|gb|EGD55825.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL B-59395] Length = 623 Score = 81.5 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 4/169 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + +DRI EIGAV++ F + P GR P+ + L GIT Sbjct: 59 FVVVDLETTGGSADDDRITEIGAVKIRGGEVLGE-FATLVDP-GRAIPPQIVALTGITTA 116 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + F + + +AHNA+FD+GF+ R+ + + + Sbjct: 117 MLYDAPRIEEVLPAFAE--FARGTVLVAHNARFDMGFLRKSAARMRLPWPFSTSLCTVVM 174 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R + +S R H AL D+ +V+ +++ Sbjct: 175 ARRILSRQEAPTVKLSALAELFQVSVRPTHRALDDARATVEVFHRLLER 223 >gi|154686487|ref|YP_001421648.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus amyloliquefaciens FZB42] gi|154352338|gb|ABS74417.1| DinG [Bacillus amyloliquefaciens FZB42] Length = 928 Score = 81.5 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 42/180 (23%), Positives = 66/180 (36%), Gaps = 7/180 (3%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 NK R +V D+ETTG K D+II+I AV + + T R F ++ PN Sbjct: 2 NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPNQAIPPFIEQLTG 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + + P + F A ++AHN FD+GF+ EL + D + Sbjct: 61 ISSGMVENELPFEAVAEEIFH---LLDGAYFVAHNIHFDLGFVRHELSEAGYELPDCEVL 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 L LC I H A D+ + V++ ++ + Sbjct: 118 DTVELSRIVFPGFEGYKLGELCAELNIVHDRP--HRADSDAEVTGLVFLDILHKLKHLPL 175 >gi|321311709|ref|YP_004203996.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis BSn5] gi|320017983|gb|ADV92969.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis BSn5] Length = 931 Score = 81.5 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 101/238 (42%), Gaps = 28/238 (11%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 NK R +V D+ETTG K D+II+I AV + + T R F ++ PN + +L Sbjct: 2 NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPAFIEQLT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+++ ++++ F ++ E + + AHN FD+GF+ EL L + Sbjct: 60 GISNQMVENEQPFEAVAEEVFQLLDGAYFV--AHNIHFDLGFVKYEL-HKAGFQLPDCEV 116 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN- 182 +DT+ ++R P + + + H H A D+ + ++++++ Q+ Sbjct: 117 LDTVELSRIVFPGFEGYKLTELSEE-LQLRHDQPHRADSDAEVTGLIFLEILEKLRQLPY 175 Query: 183 --------------------FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 NE+R + T + ++ + + RI ++E Sbjct: 176 PTLKQLRRLSQHFISDLTHLLDMFINENRHTEIPGYTRFSSFSVREPEAIDARINEDE 233 >gi|303258008|ref|ZP_07344017.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium 1_1_47] gi|330999422|ref|ZP_08323136.1| putative DNA polymerase III, epsilon subunit [Parasutterella excrementihominis YIT 11859] gi|302859351|gb|EFL82433.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium 1_1_47] gi|329574848|gb|EGG56407.1| putative DNA polymerase III, epsilon subunit [Parasutterella excrementihominis YIT 11859] Length = 196 Score = 81.5 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 1/172 (0%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R N+ R+I D ETTG+ DRI+E+ A+E+ D +F F+ P RK ++ Sbjct: 18 RANRKRRIFLDTETTGMSQATDRIVEVCAIEVDDDFNEIDSFHAFINPQ-RKVPWFVTRI 76 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HG+ +EFL DKP FS I + F + + R+ R Sbjct: 77 HGLNNEFLDDKPIFSDIGRDLLLFLEGSELWAHNMSFDAGMLNAEFARNRLPTLEKVDCR 136 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + TL +AR P +N L++L R+ I S R HGA++D+ LL VY + Sbjct: 137 LNCTLQLARSTFPGQKNSLDALLDRFAIDRSERRLHGAMIDTRLLVKVYQNL 188 >gi|268610447|ref|ZP_06144174.1| DNA polymerase III, alpha subunit [Ruminococcus flavefaciens FD-1] Length = 1441 Score = 81.5 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 6/196 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGL+ + DR+ EIGAV+L + +F + P + + +L GI+D Sbjct: 426 IVFDVETTGLNFRTDRLTEIGAVKLKNLQVV-DSFNTKVNPE-KPIPEKITELTGISDAD 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P + F +F IAHNA++D IN +R N D + Sbjct: 484 VKDAPHEAEALRMFMEF-CGDKPVLIAHNARYDTNMINQVCKRQNIDFDYTWVDTLVMCQ 542 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + + + H A D+ +L+ +YI++ NE Sbjct: 543 SMLPEMGRHKLNLVAKQ---LKLGKFDHHRASDDALMLAKIYIELAGRLKNDRGFKSLNE 599 Query: 190 DRFFKEEKKTVPNISL 205 +E +T S Sbjct: 600 LNRLVDEIETKKLKSY 615 >gi|321315425|ref|YP_004207712.1| DNA polymerase III PolC [Bacillus subtilis BSn5] gi|320021699|gb|ADV96685.1| DNA polymerase III PolC [Bacillus subtilis BSn5] Length = 1437 Score = 81.5 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 5/197 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ R S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P + +F ++ + +AHNA FD+GF+N +++ + + +IDTL Sbjct: 479 MLQDAPDVVDVIRDFREWIGD--DILVAHNASFDMGFLNVAYKKLLEVDKAKNPVIDTLE 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + R +P +N + I H A+ D+ + + +KM+ ++ + Sbjct: 537 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDTEATAYLLLKMLKDAAEKGIQYHDE 595 Query: 189 EDRFFKEEKKTVPNISL 205 + + + Sbjct: 596 LNENMGQSNAYQRSRPY 612 >gi|291484213|dbj|BAI85288.1| DNA polymerase III PolC [Bacillus subtilis subsp. natto BEST195] Length = 1437 Score = 81.5 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 5/197 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ R S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P + +F ++ + +AHNA FD+GF+N +++ + + +IDTL Sbjct: 479 MLQDAPDVVDVIRDFREWIGD--DILVAHNASFDMGFLNVAYKKLLEVDKAKNPVIDTLE 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + R +P +N + I H A+ D+ + + +KM+ ++ + Sbjct: 537 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDTEATAYLLLKMLKDAAEKGIQYHDE 595 Query: 189 EDRFFKEEKKTVPNISL 205 + + + Sbjct: 596 LNENMGQSNAYQRSRPY 612 >gi|28210957|ref|NP_781901.1| DNA polymerase III PolC [Clostridium tetani E88] gi|32469700|sp|Q895K2|DPO3_CLOTE RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|28203396|gb|AAO35838.1| DNA polymerase III, alpha chain [Clostridium tetani E88] Length = 1427 Score = 81.5 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 7/206 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG +KND+IIEIGAV++ + ++ + F+ P R + ++L GI D Sbjct: 413 YVVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDK-YSTFVNPE-RIIPEKIIELTGIHDY 470 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTL 127 +KD P + +F DF + + +AHNA FDV FI + I Sbjct: 471 MVKDAPKIEEVLPKFIDFIED--SILVAHNANFDVSFIKKNCKDFGIHFNNPILDTIPLC 528 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + ++ + + HR+ A +L + + +I Sbjct: 529 KFLYPELKRYKLNVVAKHLGIPLLNHHRAVEDAKTTGDILLKAFEDL--KDKEIMNLNML 586 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF 213 NE+ F ++ K P ++ K Sbjct: 587 NEEYFKNQDIKKSPTYHVIILVKNKI 612 >gi|240142703|ref|YP_002967216.1| Protein with DNA-directed DNA polymerase-like domain [Methylobacterium extorquens AM1] gi|240012650|gb|ACS43875.1| Protein with DNA-directed DNA polymerase-like domain [Methylobacterium extorquens AM1] Length = 754 Score = 81.5 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 7/168 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTGL DR+IE+GAVE++D R FQ P G S + GI+ Sbjct: 543 RFVVIDFETTGLSPNNGDRVIEVGAVEIVDGR-IGRRFQSLANP-GFPVSARITAITGIS 600 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + L D P + + E F A +AHNA FD F+ + D ++ T Sbjct: 601 NAMLVDAPPLAEVIREVSAFIEG--ATLVAHNAGFDRRFLQ--AEMERLGLWDDREMLCT 656 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + +R +P + + + + H AL D+ +++++ M Sbjct: 657 MRLGKRAYPGLGSYKLAFLAEHAGVALPDAMHRALADAMATAELFLVM 704 >gi|260587424|ref|ZP_05853337.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] gi|331083705|ref|ZP_08332816.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542291|gb|EEX22860.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] gi|330403916|gb|EGG83468.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium 6_1_63FAA] Length = 236 Score = 81.5 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 79/210 (37%), Gaps = 8/210 (3%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M + D+ETTGL+ DRIIEIGAV++ + + + P + +L GI Sbjct: 1 MMEYVALDLETTGLEPSKDRIIEIGAVKVRNKEVVGE-YGTLINPQ-MEIPDRITELTGI 58 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +++ ++ KP + E DF E + HN FD F+ + Sbjct: 59 SNDMVQGKPLIAQALGELLDFCEE--LPLLGHNLMFDYSFVKHQAVNAGMVFEKKGMDTL 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 L+ A SR+ N R I + H AL D+ +Y ++ + Sbjct: 117 KLARALLPELPSRSLQN---LRMHYEIPQKDAHRALEDARTTYLLYERLREEFEEKQPKL 173 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 +K KK P + KR + Sbjct: 174 FVPNALIYKV-KKQGPVTAAQKRYLQDLIK 202 >gi|82750865|ref|YP_416606.1| DNA polymerase III PolC [Staphylococcus aureus RF122] gi|123549060|sp|Q2YXK4|DPO3_STAAB RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|82656396|emb|CAI80815.1| DNA polymerase III [Staphylococcus aureus RF122] Length = 1438 Score = 81.5 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ ++IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYNKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLVDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFIKMVQQMKELGV----- 590 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 --LNHNEINKKLSNQDAYKRARP 611 >gi|309389228|gb|ADO77108.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium praevalens DSM 2228] Length = 1404 Score = 81.5 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 6/171 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTGL+ IIEIGAV+ K F+ F+ P G + + ++ GI D Sbjct: 392 FIVFDLETTGLNPSQHEIIEIGAVKYQGGKKIAE-FESFINP-GVRIPAKITEITGINDR 449 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ P + ++F + +AHNA FD GFI L+++ + D + + Sbjct: 450 MVKNAPGLEKVINDFIE--FAGTGVLVAHNADFDYGFIRTALEKLEIEKDDYTVLDTLGL 507 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 S + LN+L K +G+ + H AL D++ ++V K++ Sbjct: 508 SRAVVKDSKNHKLNTLAKYFGVD--LENHHRALDDANATAEVLAKLLELIK 556 >gi|254510913|ref|ZP_05122980.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacteraceae bacterium KLH11] gi|221534624|gb|EEE37612.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacteraceae bacterium KLH11] Length = 470 Score = 81.5 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 5/168 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL D I++IGAV ++ + + P G + ++H I D Sbjct: 278 FVVFDTETTGLLPHKDEIVQIGAVRVIKGRIVEGEQLDMLVDP-GIPIPAASTRVHKIND 336 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P + F ++A +AHNA FD+ F++ +R+ + P L Sbjct: 337 AMVLGAPDIAKAGLIFHQ--FSRDAVIVAHNAPFDMAFLHRHAKRMGVEWTHPVLDTVLL 394 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 S A S + L+++C R G+TI +H AL D+ ++V ++M+ Sbjct: 395 S-AVLFGASETHTLDAVCARLGVTIPATLRHTALGDAVATAEVLVRML 441 >gi|16078721|ref|NP_389540.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. 168] gi|221309536|ref|ZP_03591383.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. 168] gi|221313860|ref|ZP_03595665.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318783|ref|ZP_03600077.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. JH642] gi|221323055|ref|ZP_03604349.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. SMY] gi|118793|sp|P13267|DPO3_BACSU RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|40060|emb|CAA36362.1| unnamed protein product [Bacillus subtilis] gi|2634030|emb|CAB13531.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 1437 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 5/197 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ R S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P + +F ++ + +AHNA FD+GF+N +++ + + +IDTL Sbjct: 479 MLQDAPDVVDVIRDFREWIGD--DILVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLE 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + R +P +N + I H A+ D+ + + +KM+ ++ + Sbjct: 537 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDTEATAYLLLKMLKDAAEKGIQYHDE 595 Query: 189 EDRFFKEEKKTVPNISL 205 + + + Sbjct: 596 LNENMGQSNAYQRSRPY 612 >gi|119718032|ref|YP_924997.1| exonuclease, RNase T and DNA polymerase III [Nocardioides sp. JS614] gi|119538693|gb|ABL83310.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp. JS614] Length = 405 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 52/252 (20%), Positives = 94/252 (37%), Gaps = 28/252 (11%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGL K+DRI+EIG +E+ D R + + P +HGIT Sbjct: 6 IIDLETTGLFPQKHDRIVEIGLIEVSDSGAIEREWATLVNPQR---DVGPTHIHGITARD 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+F + +AHNA+FD F++ E +R + P+ + T+ + Sbjct: 63 VLDAPTFQEVAPYLIGSLAG--RTLVAHNARFDTQFLDYEFERASVGTRPPTPSLCTMQL 120 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + L C + +H AL D+ ++ + +V + E Sbjct: 121 SSSYLRGASRKLKDCCVAANVPH--ADEHTALGDARAVAGLLNYYLVNTDRPVPWSAVLE 178 Query: 190 DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE----------------HDKTIQTLGK 233 P R + + T E + + L + Sbjct: 179 STRRHWWPAPGPTPG---RPRSVLRSATPREPAAWLDRITSTLPRNPNPMVEAYLDVL-E 234 Query: 234 NAIWDRYISSNQ 245 A+ D Y+S+++ Sbjct: 235 QALLDGYLSAHE 246 >gi|269120698|ref|YP_003308875.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386] gi|268614576|gb|ACZ08944.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC 33386] Length = 1421 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 9/177 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI + + I+FDIETTG D D+IIEIGAV+L + +R F F+ P E + Sbjct: 393 MIEQEE--YIIFDIETTGFDPYKDKIIEIGAVKLKGRNIIDR-FSAFVNPE-VPIPEEII 448 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 KL ITD+ +KD ++ F +F + AHNAKFDVGF+ + +++ + L Sbjct: 449 KLTNITDDMVKDAELIDTVLPRFLEFCGDCTMV--AHNAKFDVGFLTQKARQLELEFLPS 506 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + N IS + H A+ D+ + ++IKM+ Sbjct: 507 VIDTLYWARVLITDLKRFNL---KALANYFNISLDNHHRAVDDAEATASIFIKMLNM 560 >gi|296330873|ref|ZP_06873348.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674391|ref|YP_003866063.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp. spizizenii str. W23] gi|296151878|gb|EFG92752.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412635|gb|ADM37754.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. spizizenii str. W23] Length = 1437 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 5/197 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ R S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P + +F ++ + +AHNA FD+GF+N +++ + + +IDTL Sbjct: 479 MLRDAPDVVDVIRDFREWIGD--DILVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLE 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + R +P +N + I H A+ D+ + + +KM+ ++ + Sbjct: 537 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDTEATAYLLLKMLKDAAEKGIQYHDE 595 Query: 189 EDRFFKEEKKTVPNISL 205 + + + Sbjct: 596 LNENMGQSNAYQRSRPY 612 >gi|258511408|ref|YP_003184842.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478134|gb|ACV58453.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1440 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 102/234 (43%), Gaps = 12/234 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL+++ D +IEI AV++ T+ + P R P+ ++L GIT+E Sbjct: 427 YVVFDTETTGLNAREDTLIEIAAVKVKAGQIV-DTYATLIDPE-RSLDPKIVELTGITNE 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P F + A +AHNA+FDVGF+N +R+ DP + I Sbjct: 485 MVAGQPKLREALDGFRQ--FARGAVLVAHNAEFDVGFLNQCAERLGLDPWEQPVIDTLAL 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L +L +++ ++ + H AL DS + V++ M+ + Sbjct: 543 ARVLYPGEKNYKLKTLTQKF--SVDLVNHHRALADSEATAKVFVHMLKDAKARGIHNLLD 600 Query: 189 EDRFFKEEKKTVPN---ISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAI 236 + + + ++L R++ + + H + + + K+A+ Sbjct: 601 MNHLRGQIDISRVRPFHATVLVRNREGLRNLYRLVSIAHTQYLHRVPRIPKSAL 654 >gi|258510511|ref|YP_003183945.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477237|gb|ACV57556.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 240 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 13/231 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D ETTGL + R++E+ VE+ + + + P G PEA +H ITD Sbjct: 7 RFVVVDTETTGLPPEG-RVVELALVEVGLEREPQIVYSALVDP-GCPIPPEASAVHHITD 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + KP ++ + ++ + A +AHNA+FD G + + Sbjct: 65 RDVAGKPRLFQVWPKVLEYIGD--AILVAHNAEFDRGMLPETGRPWICS---------KR 113 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + ++ L GI + H AL D+ + + V+ + + + + Sbjct: 114 LAQHLWRDAPKHSNQVLRYWLGIDVEVGQPHRALGDAIVTAHVFQRELRAYLEAGYPDDV 173 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 ++ F E V + K + + LD + +Q L + W Sbjct: 174 DDLIAFAESPIEVQTMPFGKHKGMPLKDVPLDYLDWALRNLQDLSPDLRWS 224 >gi|317498937|ref|ZP_07957220.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] gi|316893770|gb|EFV15969.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] Length = 1228 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 7/194 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG +S NDRIIEIGAV +++ + TF F+ P R + +L ITD+ Sbjct: 202 YVVFDIETTGFNSVNDRIIEIGAVRVVEG-EIKETFSEFVNPE-RPIPYKITQLTTITDD 259 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD + I +F F + +AHNA FD GFI +R+N L+ Sbjct: 260 MVKDAGTIEEILPQFLKFCEG--SVLVAHNAGFDTGFIRENAKRLNLPYDHTVVDTLGLA 317 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L+++CK I + H A+ D+ ++++ + + + Sbjct: 318 -RCLMGHLGKFTLDNICKHLN--IILETHHRAVDDATATGKIFVEFISMLKEKDITDLDQ 374 Query: 189 EDRFFKEEKKTVPN 202 + F + + Sbjct: 375 VNEFANDNVDLIKK 388 >gi|312793079|ref|YP_004026002.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180219|gb|ADQ40389.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 1402 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 80/197 (40%), Gaps = 7/197 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG DS+ DRIIEIGAV++ + T+R F F+ P G+ +L GI + Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITDR-FSTFVDPEGK-IPVRISELTGIYQD 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P EF ++ +AHNA+FD+GF+ Q LS Sbjct: 448 MVDKAPKLIDAILEFER--FASSSVLVAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELS 505 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 SS + + R H A D+ + ++I ++ + + Sbjct: 506 RRLLTDLSSYKLNKVA---EFLNVELRHHHRADSDAETTAGIFISLLERLKARGYKWLKE 562 Query: 189 EDRFFKEEKKTVPNISL 205 + K + + S Sbjct: 563 LNSIESNAKADLKSHSY 579 >gi|311068180|ref|YP_003973103.1| DNA polymerase III PolC [Bacillus atrophaeus 1942] gi|310868697|gb|ADP32172.1| DNA polymerase III PolC [Bacillus atrophaeus 1942] Length = 1437 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 5/197 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTGL + D IIE+ AV++ ++ F+ F P+ S ++L GITD+ Sbjct: 421 YIVFDVETTGLSAVYDTIIELAAVKIRGGEIIDK-FERFANPH-HPLSATTIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P + +F ++ ++ +AHNA FD+GF+N +R+ K + +IDTL Sbjct: 479 MVRDAPDVIDVVRDFREWIDD--DILVAHNASFDMGFLNVAYKRLLKVEKAQNPVIDTLE 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + R +P +N + I H A+ D+ + +KM+ ++ + + Sbjct: 537 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDAEATGYLLLKMLKDAAEKDIQYHDQ 595 Query: 189 EDRFFKEEKKTVPNISL 205 + + + Sbjct: 596 LNENMGQSNAYQRSRPY 612 >gi|261251946|ref|ZP_05944520.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891] gi|260938819|gb|EEX94807.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891] Length = 204 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 56/176 (31%), Positives = 83/176 (47%), Gaps = 9/176 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL DR IEIGAV+L+D TFQ + P G + S GIT+ Sbjct: 8 IVLDFETTGLSPNMGDRAIEIGAVKLIDGQVV-DTFQQLMNP-GFRVSSFIEGYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L PS + + S+F DF N +AHNA FD F++AE +RIN++ + + + Sbjct: 66 MLAGAPSCAEVMSDFNDFIGNDN--LVAHNASFDKRFLDAEFERINRNYRGEFACSLLVS 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++ PS + + H AL DS + + +++ M+ Q Sbjct: 124 RRLNQEAPSHKLGDLVRYMNI---DNDGVFHRALADSQMTAKLWLLMLEDMQQQGI 176 >gi|152976184|ref|YP_001375701.1| DNA polymerase III PolC [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024936|gb|ABS22706.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98] Length = 1433 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 11/212 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F + + +AHNA FD+GF+N ++ D I Sbjct: 476 MLTDAPEVGEVFKKFQAWMGD--HTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK+ I H A+ D+ + KM+ + F + Sbjct: 534 ARFLFPDMKNHRLNTLCKKL--DIELTQHHRAIYDTEATGYLLAKMLKEVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + + R + T +E Sbjct: 592 LNDSMGQGDSYKRG-----RPSHVTLLATSDE 618 >gi|312876753|ref|ZP_07736732.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311796484|gb|EFR12834.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus 6A] Length = 1402 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 7/197 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG DS+ DRIIEIGAV++ + T+R F F+ P G+ +L GI + Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITDR-FSTFVDPEGK-IPVRISELTGIYQD 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P EF + +AHNA+FD+GF+ Q LS Sbjct: 448 MVDKAPKLIDAILEFER--FASGSVLVAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELS 505 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 SS + + R H A D+ + ++I ++ + + Sbjct: 506 RRLLTDLSSYKLNKVA---EFLNVELRHHHRADSDAETTAGIFISLLERLKARGYKWLKE 562 Query: 189 EDRFFKEEKKTVPNISL 205 + K + + S Sbjct: 563 LNSIESNAKADLKSHSY 579 >gi|158320555|ref|YP_001513062.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs] gi|158140754|gb|ABW19066.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs] Length = 1441 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 7/175 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I+FDIETTGL SKND I EIGA+++ + +F + P R + ++L GI+D+ Sbjct: 426 FIIFDIETTGLSSKNDEITEIGAIKIKNNRII-DSFSTLINPE-RSIPEKIVELTGISDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD+P+ + +F DF + +AHN+ FD GFI + +R + + L+ Sbjct: 484 MVKDQPTIEVVLPQFLDFIGD--CPVVAHNSDFDTGFIRDKAERYELSFDNIAIDTLKLA 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 A + + IS + H A+ D+ ++++IK + ++ + Sbjct: 542 RALLPDLKKHRLNVIAKE---LNISLENHHRAVDDAKATAEIFIKFVEMMNKKDI 593 >gi|311030323|ref|ZP_07708413.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. m3-13] Length = 844 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 7/177 (3%) Query: 6 KMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K R +V D+ETTG KND+II++GAV + D R F F+ P P +L Sbjct: 2 KQRFVVLDLETTGNTPKKNDKIIQVGAVLIEDGEIVER-FASFVNPQC-TIPPFIEQLTN 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I + + P+F+ I + + +AHN FD+ F+ EL+ + Sbjct: 60 INQDMVGRAPTFAQIAPMLCEMLKGSS--LVAHNVPFDLSFLQHELKTSGHPTFSGNTFD 117 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L L Y + + H A D+ + +++K++ + Sbjct: 118 TVELARILLPTQKSYKLTDLSIFYELNH--DNPHRADSDAEATAIIFLKLLEKIKTL 172 >gi|288959104|ref|YP_003449445.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum sp. B510] gi|288911412|dbj|BAI72901.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum sp. B510] Length = 702 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 5/178 (2%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +VFD ETTGL D I++I AV ++ T TF + + P R PE++ HGIT Sbjct: 509 YVVFDTETTGLSPSAGDEIVQIAAVRIVGGRILTGETFNMLVDPK-RPIPPESIPFHGIT 567 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + KP+ ++ +F F + A +AHNA FD+ F+ + + P Sbjct: 568 DAMVAGKPTIDTVLPQFRSFVSG--AVLVAHNAAFDLKFLKMKERAAGVTFDCPVLDTML 625 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 LS + + + + G L + + I+M+ Sbjct: 626 LSRMLLGNDGDHTLDGIAQRLGIAVVDRHTALGDSLVTAAVFLRMIEMLRDQGVRTLD 683 >gi|210608497|ref|ZP_03287873.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787] gi|210152988|gb|EEA83994.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787] Length = 1269 Score = 80.7 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 7/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + D IIEIGAV++ + T++ + F+ P E +L I D Sbjct: 456 YVVFDIETTGFSAVEDHIIEIGAVKVENGKITDK-YSTFVNPE-VPIPFEITQLTSIDDS 513 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P I +F +F + + +AHNA FDVGFI + +N + S L+ Sbjct: 514 MVMDAPKIDVILPQFLEFVGDAS--LVAHNAGFDVGFIEQNCKNLNIEQEFVSVDTVALA 571 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + IS + H A+ D+ +++++K + + Sbjct: 572 RVLLPTLSKYKLNIVAKA---LNISLENHHRAVDDAGATAEIFVKFVEMLKEREITTLKG 628 Query: 189 EDRFFKEEKKTVPNIS 204 + F V + Sbjct: 629 VNAFGATNPDAVKKMP 644 >gi|307243534|ref|ZP_07525682.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptostreptococcus stomatis DSM 17678] gi|306493090|gb|EFM65095.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptostreptococcus stomatis DSM 17678] Length = 1202 Score = 80.7 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 7/197 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFDIETTG D I EIGAV L D +R F F+ P E +L IT+ Sbjct: 186 RFVVFDIETTGFSVTGDNITEIGAVLLEDGQIKDR-FSTFVNPK-MDIPYEVQELTNITN 243 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++D P ++F D +++ +AHNA FD GFI + + D L Sbjct: 244 DMVEDAPGIEEALNKFMD--FAKDSILVAHNAYFDTGFIAQKCSEVGLDYKHEKLDTLLL 301 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + H ++I+ H A+ D+ + ++++ + + + Sbjct: 302 ARVLMPHMKRFGLD---RLTKALSINLSGHHRAVNDAEATAQLFLRFIAMMKKDGVEKLS 358 Query: 188 NEDRFFKEEKKTVPNIS 204 + + + + T S Sbjct: 359 DINSVYGKIDHTKLRPS 375 >gi|254522385|ref|ZP_05134440.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14] gi|219719976|gb|EED38501.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14] Length = 169 Score = 80.7 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 45/99 (45%), Positives = 55/99 (55%), Gaps = 4/99 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D ETTG+ + R+IEIGAVEL+D T R F +L P RK A ++HGI+ Sbjct: 3 RIVALDTETTGISHRLGHRVIEIGAVELIDGQLTGRQFHTYLQPQ-RKVDRGAQRVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 D L KP FSS +E F AHNA FDVGF Sbjct: 62 DAMLVGKPLFSSKAAELLAFLRGSEMV--AHNATFDVGF 98 >gi|149915092|ref|ZP_01903620.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. AzwK-3b] gi|149810813|gb|EDM70652.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. AzwK-3b] Length = 481 Score = 80.7 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 5/168 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 + FD ETTGL ++ D ++++GAV +L+ T ++ P GR P + ++H +TD Sbjct: 277 FVAFDTETTGLSAQTDDVVQLGAVRVLNGRVVPGETLDTYVNP-GRPIPPASTEIHRVTD 335 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ F ++ F ++A +AHNA FD+ F++ R+ + P L Sbjct: 336 GHVRGASDFVTVGRNFHH--FARDAVLVAHNAPFDLAFLHRFADRMGVEWTHPVLDTVLL 393 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 S A + ++ L++LC R ITI +H A D+ ++ ++++ Sbjct: 394 S-AVVFGTTEQHSLDALCDRLAITIPDNLRHTAFGDAQATAEALVRLI 440 >gi|256851261|ref|ZP_05556650.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 27-2-CHN] gi|260660685|ref|ZP_05861600.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 115-3-CHN] gi|282934729|ref|ZP_06339972.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 208-1] gi|297206128|ref|ZP_06923523.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16] gi|256616323|gb|EEU21511.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 27-2-CHN] gi|260548407|gb|EEX24382.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 115-3-CHN] gi|281301304|gb|EFA93605.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 208-1] gi|297149254|gb|EFH29552.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16] Length = 1439 Score = 80.7 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 10/223 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +N+ ++FD+ETTGL S D IIEIGAV++ D R F F+ P+ + Sbjct: 415 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH---HPLSET 469 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++ + + + HN +FDVGF+NA L+R + Sbjct: 470 TINLTSITDEMVSKADDEAEVIKRFQEFYGDRPLCGHNVQFDVGFVNAALRRSGLKEITQ 529 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +++ L+SLCK+Y + + H H A D+ + K++ Sbjct: 530 PVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEH--HHRANQDAEATGYLMFKLL---DA 584 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 N F+ ++ + K K +T++ L Sbjct: 585 FNDKFEQDDLGKMNDYAKFGQVYKRAKPAHMTVLALTQKGLKN 627 >gi|282932865|ref|ZP_06338262.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 208-1] gi|281302900|gb|EFA95105.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 208-1] Length = 1439 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 10/223 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +N+ ++FD+ETTGL S D IIEIGAV++ D R F F+ P+ + Sbjct: 415 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH---HPLSET 469 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++ + + + HN +FDVGF+NA L+R + Sbjct: 470 TINLTSITDEMVSKADDEAEVIKRFQEFYGDRPLCGHNVQFDVGFVNAALRRSGLKEITQ 529 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +++ L+SLCK+Y + + H H A D+ + K++ Sbjct: 530 PVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEH--HHRANQDAEATGYLMFKLL---DA 584 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 N F+ ++ + K K +T++ L Sbjct: 585 FNDKFEQDDLGKMNDYAKFGQVYKRAKPTHMTVLALTQKGLKN 627 >gi|260663976|ref|ZP_05864829.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii SJ-7A-US] gi|260561862|gb|EEX27831.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii SJ-7A-US] Length = 1439 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 10/223 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +N+ ++FD+ETTGL S D IIEIGAV++ D R F F+ P+ + Sbjct: 415 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH---HPLSET 469 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++ + + + HN +FDVGF+NA L+R + Sbjct: 470 TINLTSITDEMVSKADDEAEVIKRFQEFYGDRPLCGHNVQFDVGFVNAALRRSGLKEITQ 529 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +++ L+SLCK+Y + + H H A D+ + K++ Sbjct: 530 PVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEH--HHRANQDAEATGYLMFKLL---DA 584 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 N F+ ++ + K K +T++ L Sbjct: 585 FNDKFEQDDLGKMNDYAKFGQVYKRAKPTHMTVLALTQKGLKN 627 >gi|304408937|ref|ZP_07390558.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183] gi|307302940|ref|ZP_07582695.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175] gi|304352758|gb|EFM17155.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183] gi|306913300|gb|EFN43722.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175] Length = 208 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 87/202 (43%), Gaps = 9/202 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV + D T R F + P G + S GI+++ Sbjct: 10 VVLDFETTGLSPNQGDRAIEIGAVLIEDGVITQR-FSELMNP-GFRISRFIEDYTGISNQ 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L+D + + + F DF + N +AHNA FD F++AE +I L + Sbjct: 68 MLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYLGQFGCSLLVA 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + P+ + K+ + + H AL D+ + +++ M+ Q Sbjct: 126 RRLYQAAPNHQLGTLVRYKKL---PTDGTFHRALADAEMTGYLWLAMLADLQQEFGVNAP 182 Query: 188 NEDRFFKEEKKTVPNISLLKRD 209 + K KKT ++ R Sbjct: 183 TFELLQKIAKKTKADVPKFLRQ 204 >gi|114321155|ref|YP_742838.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227549|gb|ABI57348.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] Length = 729 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 8/177 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGI 65 +VFD ETTGL + D I+ I V +++ F+ + P GR ++ HGI Sbjct: 535 NYVVFDTETTGLSPAEGDEIVSIAGVRMVNGRLLDGERFEQLVNP-GRTIPRSSILFHGI 593 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D + DKP ++ F F + + +AHNA FD+ FI + +R +P Sbjct: 594 HDTTVADKPRIETVLPRFHTFVGD--SVLVAHNAAFDMKFIRLKERRCGVRFDNPVLDTL 651 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 LS+ H + + + + ++H A D+ + + V+ ++ + Sbjct: 652 LLSVFLHDHTADHTLEAIAAR---LGVEVTAQHTAWGDALVTARVFACLLPLLRERG 705 >gi|313472267|ref|ZP_07812759.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 1153] gi|239529663|gb|EEQ68664.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 1153] Length = 1428 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 10/223 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +N+ ++FD+ETTGL S D IIEIGAV++ D R F F+ P+ + Sbjct: 404 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH---HPLSET 458 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++ + + + HN +FDVGF+NA L+R + Sbjct: 459 TINLTSITDEMVSKADDEAEVIKRFQEFYGDRPLCGHNVQFDVGFVNAALRRSGLKEITQ 518 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +++ L+SLCK+Y + + H H A D+ + K++ Sbjct: 519 PVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEH--HHRANQDAEATGYLMFKLL---DA 573 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 N F+ ++ + K K +T++ L Sbjct: 574 FNDKFEQDDLGKMNDYAKFGQVYKRAKPTHMTVLALTQKGLKN 616 >gi|146297347|ref|YP_001181118.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410923|gb|ABP67927.1| DNA polymerase III catalytic subunit, PolC type [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 1402 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 7/197 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG D++ DRIIEIGAV++ + +R F F+ P G+ +L GI Sbjct: 390 FVVVDIETTGFDNQKDRIIEIGAVKIENGEIVDR-FSTFVDPEGK-IPIRISELTGIYQN 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P S EF F + A +AHNA+FD+GF+ Q LS Sbjct: 448 MVDNAPKLSDAILEFEKFCSG--AILVAHNAQFDIGFLKRSYQECGLIFDYTYIDTLELS 505 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 SS + I + H A D+ + ++I ++ + + Sbjct: 506 RRVLTDLSSHKLNKVA---EFLNIELKHHHRADSDAETTAKIFISLIEKLKSRGYKYLKE 562 Query: 189 EDRFFKEEKKTVPNISL 205 + K + + S Sbjct: 563 LNTIETNTKADLKSHSY 579 >gi|70726651|ref|YP_253565.1| DNA polymerase III PolC [Staphylococcus haemolyticus JCSC1435] gi|123660050|sp|Q4L5W6|DPO3_STAHJ RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|68447375|dbj|BAE04959.1| DNA polymerase III alpha chain PolC-type [Staphylococcus haemolyticus JCSC1435] Length = 1438 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 13/208 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F P+ K S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDK-FERFSNPH-EKLSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ + A ++AHNA FD+GFI+ +R+ P I Sbjct: 480 MLTDAPEIEEVLTEFKEWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + ++IKM+ ++ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVE--LTQHHRAIYDTESTAYIFIKMVQQMKELGV----- 590 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 K+ + + N KR +P + Sbjct: 591 --TNHKDINQKLSNEDAYKRARPTHVTL 616 >gi|269123116|ref|YP_003305693.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM 12112] gi|268314442|gb|ACZ00816.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM 12112] Length = 1465 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 9/221 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG ND+IIEIGAV+L + +R F F+ P + ++L GI D Sbjct: 404 FVVFDIETTGFSPINDKIIEIGAVKLKNGKVLDR-FSEFVNPQTI-IPKKIVELTGINDN 461 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD + F +F +AHNAKFDVGFI+ + + +N + S Sbjct: 462 MVKDSDIIDKVMPRFLEFVKG--TTLVAHNAKFDVGFISKKCEDLNLETDFSYIDTLEWS 519 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 N I + H A+ D++ ++++ K++ S T+ Sbjct: 520 KILVDDVKRFNLDT---LTKRFNIKLENHHRAVDDANATAELFKKLLSLVSANGVEKLTD 576 Query: 189 EDRFFKEEKK--TVPNISLLKRDKPLFTRITKEELDEHDKT 227 +++ K NI++L ++ R+ + H K Sbjct: 577 VSEKLEKKPKIADTENITILVKNLAGLKRLYELVSISHLKY 617 >gi|238854744|ref|ZP_04645074.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 269-3] gi|238832534|gb|EEQ24841.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 269-3] Length = 1405 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 10/223 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +N+ ++FD+ETTGL S D IIEIGAV++ D R F F+ P+ + Sbjct: 381 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH---HPLSET 435 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++ + + + HN +FDVGF+NA L+R + Sbjct: 436 TINLTSITDEMVSKADDEAEVIKRFQEFYGDRPLCGHNVQFDVGFVNAALRRSGLKEITQ 495 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +++ L+SLCK+Y + + H H A D+ + K++ Sbjct: 496 PVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEH--HHRANQDAEATGYLMFKLL---DA 550 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 N F+ ++ + K K +T++ L Sbjct: 551 FNDKFEQDDLGKMNDYAKFGQVYKRAKPTHMTVLALTQKGLKN 593 >gi|218291538|ref|ZP_03495419.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius LAA1] gi|218238658|gb|EED05882.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius LAA1] Length = 240 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 13/237 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ + R +V D ETTGL + R++E+ VE+ + + + P G PEA Sbjct: 1 MKLSDARFVVVDTETTGLPPEG-RVVELALVEVGLEREPQIVYSALVDP-GCPIPPEASA 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +H ITD + KP S ++ + + + A +AHNA+FD G + + Sbjct: 59 VHHITDRDVAGKPRMSQVWPKVLGYIGD--AVLVAHNAEFDRGMLPETGRPWLCS----- 111 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + + ++ L GI + H AL D+ + + V+ + + + Sbjct: 112 ----KRLVQHLWPDAPKHANQVLRYWLGIDVEVGQPHRALGDALVTAHVFQRELRAYLEA 167 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + +E F E V + K + + LD + +Q L + W Sbjct: 168 GYPDDVDELTAFAESPIEVQTMPFGKHKGMPLKEVPLDYLDWALRNLQDLSPDLRWS 224 >gi|188589600|ref|YP_001920613.1| DNA polymerase III PolC [Clostridium botulinum E3 str. Alaska E43] gi|188499881|gb|ACD53017.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum E3 str. Alaska E43] Length = 1452 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 10/215 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG ND+IIEIGAV++ ++ F F+ P R + +L I + Sbjct: 439 FVVFDLETTGFSPINDKIIEIGAVKIKSGEIIDK-FSCFVNPK-RDIPYKITQLTSIDNN 496 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD +I +F +F +AHNA FD GFI + ++ I Sbjct: 497 MVKDADVIENILPKFMEFCEG--TVVVAHNAAFDTGFIK---KNCRDLNINFDLPILDTV 551 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R + + IS + H A+ D+ +D+ ++ +I F+ N Sbjct: 552 TLCRFLYPELKKVKLNIVAKFLGISLENHHRAVDDAKATADI---LLKSFEKIEEDFEIN 608 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + + + + +I + T+ L Sbjct: 609 DLKSLNDLFLSKVDIRKQPTYHIIILAKTQAGLKN 643 >gi|291558576|emb|CBL37376.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing bacterium SSC/2] Length = 1470 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 7/194 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG +S NDRIIEIGAV +++ + TF F+ P R + +L ITD+ Sbjct: 444 YVVFDIETTGFNSVNDRIIEIGAVRVVEG-EIKETFSEFVNPE-RPIPYKITQLTTITDD 501 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD + I +F F + +AHNA FD GFI +R+N L+ Sbjct: 502 MVKDAGTIEEILPQFLKFCAG--SVLVAHNAGFDTGFIRENAKRLNLPYDHTVVDTLGLA 559 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L+++CK I + H A+ D+ ++++ + + + Sbjct: 560 -RCLMGHLGKFTLDNICKHLN--IILETHHRAVDDATATGKIFVEFISMLKEKDITDLDQ 616 Query: 189 EDRFFKEEKKTVPN 202 + F + + Sbjct: 617 VNEFANDNVDLIKK 630 >gi|251779220|ref|ZP_04822140.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083535|gb|EES49425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1452 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 10/215 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG ND+IIEIGAV++ ++ F F+ P R + +L I + Sbjct: 439 FVVFDLETTGFSPINDKIIEIGAVKIKSGEIIDK-FSCFVNPK-RDIPYKITQLTSIDNN 496 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD +I +F +F +AHNA FD GFI + ++ I Sbjct: 497 MVKDADVIENILPKFMEFCEG--TVVVAHNAAFDTGFIK---KNCRDLNINFDLPILDTV 551 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R + + IS + H A+ D+ +D+ ++ +I F+ N Sbjct: 552 TLCRFLYPELKKVKLNIVAKFLGISLENHHRAVDDAKATADI---LLKSFEKIEEDFEIN 608 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + + + + +I + T+ L Sbjct: 609 DLKSLNDLFLSKVDIRKQPTYHIIILAKTQAGLKN 643 >gi|227499278|ref|ZP_03929390.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098] gi|227218629|gb|EEI83863.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098] Length = 1358 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 74/206 (35%), Gaps = 8/206 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL DRI EIGA +++D + + P + ++ GIT++ Sbjct: 342 FVVFDLETTGLSRYRDRITEIGACKVIDGKIC-EIYNELVNPE-MLIPEKITEITGITNQ 399 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + F +F + + N FDVGF+ R+ D ++ Sbjct: 400 MVESCPKIEEVLPGFLEFCQG--SILVGQNTDFDVGFVRENCTRLGLDFNPLYLDTLPMA 457 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFGFKT 187 A + K + I + H A D+ + ++IKM + + Sbjct: 458 RALFADMKKFSLDKIARK---LEIPAFNHHRASDDARATAQIFIKMFKMIMKEDGIDLSS 514 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF 213 K S K Sbjct: 515 INKLKSYWPKAKHEYFSATVFAKNKI 540 >gi|217973179|ref|YP_002357930.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223] gi|217498314|gb|ACK46507.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223] Length = 208 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 9/173 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV + + T R F + P G + S GI+++ Sbjct: 10 VVLDFETTGLSPNQGDRAIEIGAVLIENGVITQR-FSELMNP-GFRISRFIEDYTGISNQ 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L+D + + + F DF + N +AHNA FD F++AE +I L + Sbjct: 68 MLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYLGQFGCSLLVA 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + P+ + K+ + + H AL D+ + +++ M+ Q Sbjct: 126 RRLYQAAPNHQLGTLVRYKQL---PTDGTFHRALADAEMTGHLWLAMLADLQQ 175 >gi|30171791|gb|AAP20774.1| DNA polymerase III alpha subunit [Peanut witches'-broom phytoplasma] Length = 1492 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 82/220 (37%), Gaps = 9/220 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGIT 66 +V DIETTG DRII I AV++ + F + P K S +L I+ Sbjct: 404 NYVVLDIETTGFSKTRDRIISIAAVKIQNGKII-EYFDELINPGKDIKISNLIQRLTNIS 462 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRI 123 DE L +KP I S+F DF + N +AHNA FD+ F+ + I L Sbjct: 463 DEILLNKPHIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPLLPVIDT 522 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + K + + S H AL D+ + ++++M+ Sbjct: 523 LTLAQKYFNKILKYFSLEKIVKSFKIKLDSEGQYHNALFDARATALIFLEMLEQLEAQKI 582 Query: 184 ----GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + + D F+ + K LF I+ Sbjct: 583 FNFYDLQGSLDIKFERPYHVNIIVKNKKGYNNLFHLISDA 622 >gi|317132568|ref|YP_004091882.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3] gi|315470547|gb|ADU27151.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3] Length = 1457 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL+ +NDRI EIGAV + + + F +F+ P+ + P +L GITD+ Sbjct: 443 FVAFDLETTGLNRENDRITEIGAVRIRNG-EIGERFDLFVNPH-KPIPPRITELTGITDD 500 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTL 127 +KD +F+ F + A +AHNA+FD GF A R + I Sbjct: 501 MVKDAAEEDEALRQFFAFCGD--AVLVAHNAEFDTGFCRAAAARCGMEFPYTYMDSIPLC 558 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + + D + HR+ A + +L V + M+ Sbjct: 559 RTVLPGLKNYKLDTVAGGLHLPPFNHHRASDDAFVLGQILVQV-LDMLREQK 609 >gi|238916793|ref|YP_002930310.1| DNA polymerase III subunit alpha, the Gram-positive type [Eubacterium eligens ATCC 27750] gi|238872153|gb|ACR71863.1| DNA polymerase III subunit alpha, the Gram-positive type [Eubacterium eligens ATCC 27750] Length = 1513 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 76/196 (38%), Gaps = 4/196 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG ++ DRIIEIGAV++ + +R F F+ P L I D+ Sbjct: 473 YVVFDLETTGFSAEVDRIIEIGAVKVCNGEIVDR-FSTFVNPE-IPIPFRIETLTHINDQ 530 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P I EF +F A +AHNA+FD FI + ++I + L+ Sbjct: 531 MVMNAPKIEEILPEFLEFCEG--AVMVAHNAEFDTSFIINKAEKIGINVDTTIIDTVLLA 588 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + SH + + IKM+ + Sbjct: 589 QFLMPNLHNYKLDTLTKHLNVVLESHHRAVDDAAATADIFVKMIKMLYDRDIPDVDKLNE 648 Query: 189 EDRFFKEEKKTVPNIS 204 E + + K + Sbjct: 649 EGKMDENAIKKLHQYH 664 >gi|330448476|ref|ZP_08312124.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492667|dbj|GAA06621.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 214 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 7/174 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 ++ D ETTGL + DR IEIGAV+L + + FQ + P G + S GI+ Sbjct: 16 NVVILDFETTGLSPNQGDRAIEIGAVKLQNGEVVGQ-FQQLMNP-GFRVSSFIEGYTGIS 73 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + L+ PS + +EF DF + N +AHNA FD F++AEL++IN+ + Sbjct: 74 NNMLRTAPSCDVVMNEFADFIGDAN--LVAHNASFDQRFLDAELEQINRH--YGGTFTCS 129 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + IARR + + N Y + H AL DS + + +++ M+ Q Sbjct: 130 MLIARRLYQDAPNHKLGTLVDYKNIYHNGVFHRALADSEMTARLWLVMLDDIKQ 183 >gi|167766537|ref|ZP_02438590.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1] gi|167711660|gb|EDS22239.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1] Length = 1473 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 7/194 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG +S NDRIIEIGAV +++ + TF F+ P R + +L ITD+ Sbjct: 447 YVVFDIETTGFNSVNDRIIEIGAVRVVEG-EIKETFSEFVNPE-RPIPYKITQLTTITDD 504 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD + I +F F + +AHNA FD GFI +R+N L+ Sbjct: 505 MVKDAGTIEEILPQFLKFCAG--SVLVAHNAGFDTGFIRENAKRLNLPYDHTVVDTLGLA 562 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L+++CK I + H A+ D+ ++++ + + + Sbjct: 563 -RCLMGHLGKFTLDNICKHLN--IILETHHRAVDDATATGKIFVEFISMLKEKDITDLDQ 619 Query: 189 EDRFFKEEKKTVPN 202 + F + + Sbjct: 620 VNEFANDNVDLIKK 633 >gi|253682510|ref|ZP_04863307.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum D str. 1873] gi|253562222|gb|EES91674.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum D str. 1873] Length = 1443 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 71/181 (39%), Gaps = 4/181 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG S+ D+IIEIGAV++ + + +F F+ P + +L IT++ Sbjct: 430 FVVFDLETTGFSSEYDKIIEIGAVKIKNGNII-DSFSTFVNPEIK-IPYNITELTSITND 487 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + ++ +F +F + N N I+ + + Sbjct: 488 DVKNADTIDNVLPKFMEFCKDSVLVAHNANFDMSFIRKNCNDLSIDINY-TVMDTVPLAK 546 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + + + HR+ A + +L + K++ + Sbjct: 547 FLFPELKRYKLNTIAKHLGVSLENHHRAVDDAKATADILLCCF-KLLDDMKITSLDSLNK 605 Query: 189 E 189 E Sbjct: 606 E 606 >gi|307298437|ref|ZP_07578240.1| DNA polymerase III, alpha subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306915602|gb|EFN45986.1| DNA polymerase III, alpha subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 1412 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 10/222 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTGL+ K D IIEIGA+++ TF F+ P ++ S L GIT++ Sbjct: 402 FIVFDLETTGLNPKEDEIIEIGAIKMKGNEIL-ETFSSFVKPQ-KELSSLITSLTGITED 459 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + EF + +AHNA FD GFI +++ + I Sbjct: 460 MLSGAGTIKQVLPEFTK--FAEGGILVAHNASFDYGFIRNSVKKYFGGDWEMPCIDTLAL 517 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + N + + + + H H A D+ + ++V K + + Sbjct: 518 AKSLYRAKSYSLDNVVKR---LKLGHFDHHRAYEDAKVTAEVLKKFLQQAKKRGVEKVNE 574 Query: 189 EDRFFKEEKKTV---PNISLLKRDKPLFTRITKEELDEHDKT 227 ++ K + +IS+L +++ + K H K Sbjct: 575 LEKLRKNQNLDSLKPVHISILSKNRKGLENLYKLVTASHTKY 616 >gi|218288332|ref|ZP_03492631.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius LAA1] gi|218241691|gb|EED08864.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius LAA1] Length = 1440 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 102/234 (43%), Gaps = 12/234 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL+++ D +IEI AV++ T+ + P R P+ ++L GIT+E Sbjct: 427 YVVFDTETTGLNAREDTLIEIAAVKVKAGQIV-DTYATLIDPE-RALDPKIVELTGITNE 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P F + A +AHNA+FDVGF+N +R+ DP + I Sbjct: 485 MVAGQPKLKEALDGFRQ--FARGAVLVAHNAEFDVGFLNQCAERLGLDPWEEPVIDTLAL 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L +L +++ ++ + H AL DS + V++ M+ + Sbjct: 543 ARVLYPGEKNYKLKTLTQKF--SVDLVNHHRALADSEATAKVFVHMLKDAKARGIHNLLD 600 Query: 189 EDRFFKEEKKTVPN---ISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAI 236 + + + ++L R++ + + H + + + K+A+ Sbjct: 601 MNHLRGQIDISRVRPFHATVLVRNREGLRNLYRLVSIAHTQYLHRVPRIPKSAL 654 >gi|291545334|emb|CBL18442.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp. SR1/5] Length = 1129 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 12/224 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + RIIEIGAV++ T+R F F+ P +L I D Sbjct: 102 FVVFDIETTGFSALTCRIIEIGAVKVEKGQITDR-FSTFVNPE-VPIPFRIEQLTSINDS 159 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P + +F +F +AHNA FD+ FI +R ++ Sbjct: 160 MVLDAPVIEEVLPKFLEFCEG--CVMVAHNADFDMSFIIENCKRQGISDDFTYVDTVGMA 217 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R L+++ K G+++ H H A+ D+ ++++++ + + + Sbjct: 218 RFLLPA-LNRFKLDTVAKAVGVSLDH--HHRAVDDAACTAEIFVRFVKMLEERDIFDVDE 274 Query: 189 EDRFFKEEKKTVPNIS-----LLKRDKPLFTRITKEELDEHDKT 227 +R T+ + + R++ + K H K Sbjct: 275 MNRQGAVSPDTIRKLPTYHAIVFARNETGRINLYKLVSQSHLKY 318 >gi|197301360|ref|ZP_03166441.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC 29176] gi|197299517|gb|EDY34036.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC 29176] Length = 1517 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 7/194 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTG + D+IIEIGAV++++ +R F F+ P R E L ITDE Sbjct: 481 YIVFDIETTGFSAIRDKIIEIGAVKVVNGEIVDR-FSTFVNPQ-RPIPFEITNLTSITDE 538 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + ++ +F +F + +AHNA FDVGFI + + ++ Sbjct: 539 MVLEADPIENVLPQFLEFVGD--GVLVAHNASFDVGFIEQNCRYQEIEYRFTYVDTVAMA 596 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + IS + H A+ D+ +++++K + + + Sbjct: 597 RVLLPTLSKYKLNLVAKT---LGISLENHHRAVDDAGATAEIFVKFVEMLKKDHITDLKG 653 Query: 189 EDRFFKEEKKTVPN 202 +RF + + Sbjct: 654 INRFGERNVNAIRK 667 >gi|257066105|ref|YP_003152361.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548] gi|256797985|gb|ACV28640.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548] Length = 1365 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 76/206 (36%), Gaps = 8/206 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL DRI EIGA + T + + P + +++ GIT+E Sbjct: 349 FVVFDLETTGLSRYKDRITEIGACRVEGGKIT-EIYNELVNPE-MVIPEKIIEITGITNE 406 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P+ + F DF + + + N FDVGF+ R+ D ++ Sbjct: 407 MVKDCPTIEEVLPGFLDFCKD--SILVGQNTDFDVGFVRENCHRMGLDFNPIYLDTLPMA 464 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFGFKT 187 A + K + I + H A D+ + ++IKM + T Sbjct: 465 RALFSDMKKFSLDKIARK---LEIPAFNHHRASDDARATAQIFIKMFKMIMEEDGINLST 521 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF 213 K S K Sbjct: 522 INKLKSHWPKSKHEYFSATVYAKDKV 547 >gi|319649525|ref|ZP_08003681.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2] gi|317398687|gb|EFV79369.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2] Length = 1441 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 85/189 (44%), Gaps = 6/189 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ D +R F+ F P+ S + L GITD+ Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKIHDGEIIDR-FESFANPH-HPLSATTINLTGITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P + +F + +A +AHNA FD+GF+N +++ I Sbjct: 484 LVENAPEVEEVLKKFHE--WAGDAVLVAHNASFDMGFLNVGYKKMGIGKASNPVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L K++ + H A+ D+ + +KM+ + + Sbjct: 542 ARFLYPDMKNHRLNTLAKKF--DVELTQHHRAIYDAEATGYLLLKMLKHADEKGIEYHDQ 599 Query: 189 EDRFFKEEK 197 + + Sbjct: 600 FNDNMGQGN 608 >gi|157692337|ref|YP_001486799.1| DNA polymerase III PolC [Bacillus pumilus SAFR-032] gi|157681095|gb|ABV62239.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus SAFR-032] Length = 1437 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 92/197 (46%), Gaps = 5/197 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ +R F+ F P+ S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKIKGGEIIDR-FEAFANPH-HPLSATTIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P + +F ++ +AHNA FD+GF+N +R+ K + +IDTL Sbjct: 479 MVRDAPDVVDVVRDFKEWI--GQDILVAHNASFDMGFLNTAYKRLLKTDKASNPVIDTLE 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + R +P +N + I H A+ D+ + +KM+ ++ + + Sbjct: 537 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDAEATGYLMLKMLKDAAEKDIAYHDQ 595 Query: 189 EDRFFKEEKKTVPNISL 205 + + + Sbjct: 596 LNENMGQSNAYQRSRPY 612 >gi|144897909|emb|CAM74773.1| DNA polymerase III, epsilon subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 677 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 8/177 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 IVFD ETTGL + D+I++IGAV +++ + +F + P GR PE++K HGIT Sbjct: 484 FIVFDTETTGLQPSQGDQIVQIGAVRIVNGRILSGESFNRIVNP-GRVIPPESIKFHGIT 542 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ +KDKP + +F +A +AHNA FD+ F+ ++ +P Sbjct: 543 DDMVKDKPPLGVVLPQFKA--FAADAVLVAHNAAFDLKFLRMNERQFGLKFDNPVLDTMM 600 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 LS P + + L+++C R GI+I +H AL D+ + + V + + Sbjct: 601 LS-NYLDGPETGHSLDAICDRLGISI--TDRHTALGDAIVTAAVLLNQIDALESRGI 654 >gi|222151098|ref|YP_002560252.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402] gi|222120221|dbj|BAH17556.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402] Length = 1434 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 13/208 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL S+ D+IIE+ AV++ D ++ F+ F P G + + L GITD+ Sbjct: 418 YVVFDVETTGLSSQYDKIIELAAVKVKDGEIIDK-FERFSNP-GERLNETIKNLTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P S+ ++F DF + A ++AHNA FD+GFI+ R+ P + I Sbjct: 476 MLIDAPPIESVLNDFKDFVGD--AIYVAHNASFDMGFIDTGFDRLGYGPTENGVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + +++KM+ + Sbjct: 534 SRTINTEMGKHGLNFLAKKYGVE--LTQHHRAIYDAETTAHIFVKMLKQMETLGV----- 586 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 KE + N KR +P+ + Sbjct: 587 --TNHKEIDLKLSNKDAYKRARPMHVTL 612 >gi|294678385|ref|YP_003579000.1| PAS domain/exonuclease domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294477205|gb|ADE86593.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB 1003] Length = 704 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 6/177 (3%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 +VFD ETTGL D I++I AV +++ + F + P GR + +HGIT Sbjct: 510 FVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNP-GRPIPAASTAVHGIT 568 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + P+ + + F + A +AHNA FD+ + + D + Sbjct: 569 EAMVATAPAIAEVGRRFHK--FAEGAVLVAHNAPFDL-EFLRRKELLIGKNFDNPVLDTV 625 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 L A + + L++L R GITI ++H AL D+ ++ +++++ Sbjct: 626 LLSAVVFGAAEGHSLDALTHRLGITIPEEARHTALGDTVATAEAFLRLLPALKARGL 682 >gi|228964616|ref|ZP_04125724.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar sotto str. T04001] gi|228795047|gb|EEM42545.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar sotto str. T04001] Length = 365 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 T + + + +L + KE++ E++ Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215 >gi|194015013|ref|ZP_03053630.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus pumilus ATCC 7061] gi|194014039|gb|EDW23604.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus pumilus ATCC 7061] Length = 1437 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 5/197 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ +R F+ F P+ S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKIKGGEIIDR-FEAFANPH-HPLSATTIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + +F ++ +AHNA FD+GF+N +R+ K + +IDTL Sbjct: 479 MVKDAPDVVDVVRDFKEWI--GQDILVAHNASFDMGFLNTAYKRLLKTDKASNPVIDTLE 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + R +P +N + I H A+ D+ + +KM+ ++ + + Sbjct: 537 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDAEATGYLMLKMLKDAAEKDIAYHDQ 595 Query: 189 EDRFFKEEKKTVPNISL 205 + + + Sbjct: 596 LNENMGQSNAYQRSRPY 612 >gi|294677643|ref|YP_003578258.1| PAS domain/exonuclease domain-containing protein [Rhodobacter capsulatus SB 1003] gi|6014992|sp|O68045|DPO3E_RHOCA RecName: Full=DNA polymerase III subunit epsilon-like protein gi|3128279|gb|AAC16131.1| DNA polymerase III alpha chain [Rhodobacter capsulatus SB 1003] gi|294476463|gb|ADE85851.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB 1003] Length = 704 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 6/177 (3%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 +VFD ETTGL D I++I AV +++ + F + P GR + +HGIT Sbjct: 510 FVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNP-GRPIPAASTAVHGIT 568 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + P+ + + F + A +AHNA FD+ + + D + Sbjct: 569 EAMVATAPAIAEVGRRFHK--FAEGAVLVAHNAPFDL-EFLRRKELLIGKNFDNPVLDTV 625 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 L A + + L++L R GITI ++H AL D+ ++ +++++ Sbjct: 626 LLSAVVFGAAEGHSLDALTHRLGITIPEEARHTALGDTVATAEAFLRLLPALKARGL 682 >gi|153000864|ref|YP_001366545.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185] gi|160875572|ref|YP_001554888.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195] gi|151365482|gb|ABS08482.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185] gi|160861094|gb|ABX49628.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195] gi|315267759|gb|ADT94612.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678] Length = 208 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 9/173 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV + D T R F + P G + S GI+++ Sbjct: 10 VVLDFETTGLSPNQGDRAIEIGAVLIEDGVITQR-FSELMNP-GFRISRFIEDYTGISNQ 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L+D + + + F DF + N +AHNA FD F++AE +I L + Sbjct: 68 MLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYLGQFGCSLLVA 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + P+ + K+ + + H AL D+ + +++ M+ Q Sbjct: 126 RRLYQAAPNHQLGTLVRYKQL---PTDGTFHRALADAEMTGHLWLAMLADLQQ 175 >gi|126174568|ref|YP_001050717.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155] gi|125997773|gb|ABN61848.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155] Length = 208 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 9/173 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV + D T R F + P G + S GI+++ Sbjct: 10 VVLDFETTGLSPNQGDRAIEIGAVLIEDGVITQR-FSELMNP-GFRISRFIEDYTGISNQ 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L+D + + + F DF + N +AHNA FD F++AE +I L + Sbjct: 68 MLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYLGQFGCSLLVA 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + P+ + K+ + + H AL D+ + +++ M+ Q Sbjct: 126 RRLYQAAPNHQLGTLVRYKQL---PTDGTFHRALADAEMTGHLWLAMLADLQQ 175 >gi|126654115|ref|ZP_01725933.1| DNA polymerase III PolC [Bacillus sp. B14905] gi|126589395|gb|EAZ83545.1| DNA polymerase III PolC [Bacillus sp. B14905] Length = 1443 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 6/175 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ D ++ ++ F P+ S ++L GITD+ Sbjct: 428 YVVFDVETTGLSTAYDTIIELAAVKIKDGQVIDK-YESFANPH-HPLSATTIELTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + EF F + +AHNA FD+GF+ ++ + I Sbjct: 486 MVRHAPEVEQVIKEFHAFIGD--GIVVAHNASFDIGFLYTGYKKFGLEGTTHPVIDTLEL 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + LN+LCK++ I H A+ D+ + ++++ ++ Sbjct: 544 ARLLYPTMKNHRLNTLCKKFNIE--LTQHHRAIYDTEATGYLLLQLLKDADELVI 596 >gi|15805882|ref|NP_294580.1| DNA polymerase III subunit epsilon [Deinococcus radiodurans R1] gi|6458571|gb|AAF10431.1|AE001939_8 DNA polymerase III, epsilon subunit, putative [Deinococcus radiodurans R1] Length = 197 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 8/173 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRK-----NSPEALKLH 63 +VFD+ETTG + I+EIGAV ++ F+ + P +A ++H Sbjct: 24 VVFDLETTGFSPASAAIVEIGAVRIVGGQIDETLKFETLVRPTRPDGSLLSIPWQAQRVH 83 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+DE ++ P+ + +F+DF + + +AHN FD GF+ A +R+ + Sbjct: 84 GISDEMVRRAPAIKDVLPDFFDFVDG--SAVVAHNVSFDGGFMRAGAERLGLSWAPEREL 141 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 R ++L L +R G+ + +H + D + + Y++++ Sbjct: 142 CTMQLSRRAFPRERTHNLTVLAERLGLEFAPGGRHRSYGDVQVTAQAYLRLLE 194 >gi|331082627|ref|ZP_08331750.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA] gi|330400246|gb|EGG79888.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA] Length = 1487 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 80/210 (38%), Gaps = 6/210 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + D+IIEIGAV++ + T R F F+ P +L I D Sbjct: 463 YVVFDIETTGFSALKDKIIEIGAVKVENGRITER-FSEFVNPQ-IPIPFRIEELTSINDN 520 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ I +F F +AHNA+FD+ FI + I + D ++ Sbjct: 521 MVADAPTIDVILPKFEKFCEG--CVMVAHNAEFDMSFIRKNYEDIGIEREDTVVDTVGMA 578 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + D + + HR+ A + + +I+M N Sbjct: 579 RFLLPQLNRFKLDTVAKAVGVSLEHHHRAVDDASCTADIFVK-FIEMCAERDIFNLDELN 637 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + + +P + K R+ Sbjct: 638 EKGTVSVHSIQKMPTYHAIILAKNDVGRVN 667 >gi|302872252|ref|YP_003840888.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis OB47] gi|302575111|gb|ADL42902.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis OB47] Length = 1402 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 5/220 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG DS+ DRIIEIGAV++ + T R F F+ P G+ +L GI + Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITER-FSTFVDPEGK-IPVRISELTGIYQD 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P S EF + +AHNA+FD+GF+ Q LS Sbjct: 448 MVDKAPKLSDAILEFER--FASGSVLVAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELS 505 Query: 129 IARRKHPSSRNDLN-SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 SS + + HR+ A +++ + ++ G + + Sbjct: 506 RRLLTDLSSHKLNKVAEFLNVELKHHHRADSDAETTANIFISLVERLKARGYKWLKELNS 565 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 E + K + ++L +++ + K H + Sbjct: 566 IESNAKADLKSHSYHATILVKNQQGLKNLYKLVSYSHLEY 605 >gi|163815213|ref|ZP_02206590.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759] gi|158449408|gb|EDP26403.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759] Length = 1623 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 7/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL K+++IIEIGAV++ D TF F+ P G + +L I D+ Sbjct: 567 YVVFDIETTGLSKKHNKIIEIGAVKVKDGEVV-DTFSEFINP-GVPIPYQIEQLTSINDD 624 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + I F +F + +AHNA FD GF+ + + + TLS Sbjct: 625 MVKDAPMYDVIVPRFVEFCGD--DIVVAHNASFDTGFVKKNAEELGLRFDNTVLDTMTLS 682 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + + H A+ D+ S V+ K++ + + + Sbjct: 683 HILLPELGKFTLDRVCKE---LKVVNAHHHRAIDDAEATSKVFFKLLDMLKERDVKTMDD 739 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 740 LNVLGSTSPDAIKKDK 755 >gi|229043387|ref|ZP_04191104.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH676] gi|228725968|gb|EEL77208.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH676] Length = 934 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VEMAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 T + + + +L + KE++ E++ Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215 >gi|260589219|ref|ZP_05855132.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] gi|260540300|gb|EEX20869.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] Length = 1487 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 6/210 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + D+IIEIGAV++ + T R F F+ P +L I D Sbjct: 463 YVVFDIETTGFSALKDKIIEIGAVKVENGRITER-FSEFVNPQ-IPIPFRIEELTSINDN 520 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ I +F F +AHNA+FD+ FI + I + D ++ Sbjct: 521 MVADAPTIDVILPKFEKFCEG--CVMVAHNAEFDMSFIRKNYEDIGIEREDTVVDTVGMA 578 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + D + + HR+ A + + +I+M V N Sbjct: 579 RFLLPQLNRFKLDTVAKAVGVSLEHHHRAVDDASCTADIFVK-FIEMCVERDIFNLDELN 637 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + + +P + K R+ Sbjct: 638 EKGTVSVHSIQKMPTYHAIILAKNDVGRVN 667 >gi|227498668|ref|ZP_03928812.1| DNA polymerase III [Acidaminococcus sp. D21] gi|226904124|gb|EEH90042.1| DNA polymerase III [Acidaminococcus sp. D21] Length = 225 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 74/175 (42%), Gaps = 7/175 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITD 67 +V DIETTGLD IIEIGAV + + + + R FQ FL P + SP L GITD Sbjct: 57 YVVIDIETTGLDVARSAIIEIGAVHVRNGAVSGR-FQTFLTPEPYQSLSPFITNLTGITD 115 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L P+F I DF + HN FD+ F+ + R + L+ + Sbjct: 116 SDLVGAPTFREILPRLRDFLGG--YTLVGHNVNFDINFLYDRIYRETGEHLNNPYLDTKK 173 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 S L +LCK +G + H A+ D L V + +Q Sbjct: 174 LAKTVVPGLSHYSLEALCKHFG---IAGNHHRAVDDCELTEKVLDALWRLKTQQG 225 >gi|222099063|ref|YP_002533631.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359] gi|221571453|gb|ACM22265.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359] Length = 1367 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 50/194 (25%), Positives = 95/194 (48%), Gaps = 7/194 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGLD + D IIEIGAV++ + + + + P+G S ++ ++ GIT E Sbjct: 360 FVVFDFETTGLDPQVDEIIEIGAVKIKEGRIIDE-YHTLIKPSG-TISRKSAEITGITQE 417 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ + + + EF +F + + +AHNA FD F+ ++++ +DTL+ Sbjct: 418 MLEGERAIEEVLPEFLEFLED--SILVAHNANFDYRFLRLWIKKVLGKD-WEKPYVDTLA 474 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +A+ L+S+ K+ G+ H AL D+ + + V+++ + +I + Sbjct: 475 LAKSLLRLKSYSLDSVVKKLGLG--SFRHHRALDDARVTAQVFLRFIEMMKKIGITKLSE 532 Query: 189 EDRFFKEEKKTVPN 202 ++ T Sbjct: 533 MEKLKDSVDFTAQK 546 >gi|256544693|ref|ZP_05472065.1| Gram-positive family DNA polymerase III, alpha subunit [Anaerococcus vaginalis ATCC 51170] gi|256399582|gb|EEU13187.1| Gram-positive family DNA polymerase III, alpha subunit [Anaerococcus vaginalis ATCC 51170] Length = 1398 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 7/189 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R IVFD+ETTGL D+I EIGAV++ + F + P + + ++L GIT+ Sbjct: 383 RFIVFDLETTGLSKYIDKITEIGAVKIENGEII-EVFNELVNPE-KMIPQKVVELTGITN 440 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + DKP + +F + +++ ++ N FD+GFI N +DTL Sbjct: 441 EMVMDKPKIDEVLPKFLE--FSKDSYFVGQNTDFDIGFIK--EACDNLSYKFEPIYLDTL 496 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P+ + + + + H A D+ + ++IK+ N Sbjct: 497 PMARAVFPTMGRFSLDKLAKK-LGVGPFNHHRASDDAMTTAKIFIKLFEKIKDKNKDLSL 555 Query: 188 NEDRFFKEE 196 + K + Sbjct: 556 EKINSIKTK 564 >gi|299534745|ref|ZP_07048075.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1] gi|298729833|gb|EFI70378.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1] Length = 1443 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 6/175 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ D ++ ++ F P+ S ++L GITD+ Sbjct: 428 YVVFDVETTGLSTAYDTIIELAAVKIKDGQVIDK-YESFANPH-HPLSATTIELTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P + EF F + A +AHNA FD+GF+ ++ + I Sbjct: 486 MVRNAPEVEQVIKEFHAFIGD--AIVVAHNASFDIGFLYTGYKKFGLEDTVHPVIDTLEL 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + LN+LCK++ I H A+ D+ + ++++ ++ Sbjct: 544 ARLLYPTMKNHRLNTLCKKFNIE--LTQHHRAIYDTEATGYLLLQLLKDADELAI 596 >gi|169342745|ref|ZP_02863785.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens C str. JGS1495] gi|169299251|gb|EDS81321.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens C str. JGS1495] Length = 1449 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 6/221 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG SKND+IIEIGAV+L D +F F+ P + +L IT Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIV-DSFSTFVDPKVN-IPYKITELTSITQN 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127 + +P+ + +F +F + + +AHNA FDVGFI + + Sbjct: 493 MVNGQPTIDEVLPKFMEFVGD--SVLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLA 550 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-FK 186 + +L + + HR+ A + +L + KM + Sbjct: 551 RYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEMDIHDVKTLN 610 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 +K + +I +L +++ + K H Sbjct: 611 EKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLVSMAHLDY 651 >gi|168216978|ref|ZP_02642603.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens NCTC 8239] gi|182380934|gb|EDT78413.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens NCTC 8239] Length = 1449 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 6/221 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG SKND+IIEIGAV+L D +F F+ P + +L IT Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIV-DSFSTFVDPKVN-IPYKITELTSITQN 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127 + +P+ + +F +F + + +AHNA FDVGFI + + Sbjct: 493 MVNGQPTIDEVLPKFMEFVGD--SVLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLA 550 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-FK 186 + +L + + HR+ A + +L + KM + Sbjct: 551 RYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEMDIHDVKTLN 610 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 +K + +I +L +++ + K H Sbjct: 611 EKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLVSMAHLDY 651 >gi|229149839|ref|ZP_04278067.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus m1550] gi|228633520|gb|EEK90121.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus m1550] Length = 934 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--NQPHRADSDALATAELFLQFLNEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 T + + + +L + KE++ E++ Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215 >gi|110799061|ref|YP_696378.1| DNA polymerase III PolC [Clostridium perfringens ATCC 13124] gi|168211421|ref|ZP_02637046.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens B str. ATCC 3626] gi|110673708|gb|ABG82695.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens ATCC 13124] gi|170710571|gb|EDT22753.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens B str. ATCC 3626] Length = 1449 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 6/221 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG SKND+IIEIGAV+L D +F F+ P + +L IT Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIV-DSFSTFVDPKVN-IPYKITELTSITQN 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127 + +P+ + +F +F + + +AHNA FDVGFI + + Sbjct: 493 MVNGQPTIDEVLPKFMEFVGD--SVLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLA 550 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-FK 186 + +L + + HR+ A + +L + KM + Sbjct: 551 RYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEMDIHDVKTLN 610 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 +K + +I +L +++ + K H Sbjct: 611 EKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLVSMAHLDY 651 >gi|229109097|ref|ZP_04238697.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock1-15] gi|228674375|gb|EEL29619.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock1-15] Length = 934 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 88/220 (40%), Gaps = 10/220 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL+++ + +I Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQVGYTEIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 T + + + +L + KE++ E++ Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215 >gi|229144240|ref|ZP_04272654.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST24] gi|228639248|gb|EEK95664.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST24] Length = 934 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 T + + + +L + KE++ E++ Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215 >gi|222529790|ref|YP_002573672.1| DNA polymerase III subunit alpha [Caldicellulosiruptor bescii DSM 6725] gi|222456637|gb|ACM60899.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM 6725] Length = 1402 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG DS+ DRIIEIGAV++ + T R F F+ P G+ +L GI + Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITER-FSTFVDPEGK-IPVRISELTGIYQD 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P S EF + +AHNA+FD+GF+ Q LS Sbjct: 448 MVDKAPKLSDAILEFEK--FASGSVLVAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELS 505 Query: 129 IARRKHPSSRNDLN-SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 SS + + HR+ A + + + ++ G + + Sbjct: 506 RRLLTDLSSHKLNKVAEFLNIELKHHHRADSDAETTAGIFISLVERLKARGYKWLKELNS 565 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 E + K + ++L +++ + K H + Sbjct: 566 IESNAKADLKSHSYHATILVKNQQGLKNLYKLVSYSHLEY 605 >gi|206970727|ref|ZP_03231679.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1134] gi|229078824|ref|ZP_04211377.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock4-2] gi|229178049|ref|ZP_04305421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus 172560W] gi|206734363|gb|EDZ51533.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1134] gi|228605537|gb|EEK62986.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus 172560W] gi|228704506|gb|EEL56939.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock4-2] Length = 934 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 T + + + +L + KE++ E++ Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215 >gi|228952021|ref|ZP_04114116.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957917|ref|ZP_04119657.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801833|gb|EEM48710.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807553|gb|EEM54077.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 934 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 T + + + +L + KE++ E++ Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215 >gi|218896571|ref|YP_002444982.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus G9842] gi|218545327|gb|ACK97721.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus G9842] Length = 934 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 T + + + +L + KE++ E++ Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215 >gi|310830408|ref|YP_003965509.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2] gi|309249875|gb|ADO59441.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2] Length = 311 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 15/184 (8%) Query: 7 MRKIVF--------DIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 M +I+ DIETTG K RIIE+ V++ + + F + P + Sbjct: 16 MNEIILRSNLYVVADIETTGFSPAKGGRIIEVAGVKIENGKIVDE-FNQLINPEQKIYP- 73 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + +L GIT+E + KP F + EF+ F + A ++AHN FD Sbjct: 74 KITELTGITNEMVSGKPVFGQVLPEFYRFIGD--AVFVAHNKSFDWDRYLLHYFEKVGII 131 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + I + + L +CK G+ I + H AL DS L+ V+++ + Sbjct: 132 ADNASICTKILAKMYRPNLPAYGLEDICKDAGVQI--TNHHRALDDSIALAHVFLRYLNT 189 Query: 178 GSQI 181 + + Sbjct: 190 YAPL 193 >gi|296502210|ref|YP_003663910.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171] gi|296323262|gb|ADH06190.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171] Length = 934 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 T + + + +L + KE++ E++ Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215 >gi|229189723|ref|ZP_04316737.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC 10876] gi|228593772|gb|EEK51577.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC 10876] Length = 934 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 T + + + +L + KE++ E++ Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215 >gi|229126955|ref|ZP_04255966.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-Cer4] gi|228656555|gb|EEL12382.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-Cer4] Length = 934 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 T + + + +L + KE++ E++ Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215 >gi|218230901|ref|YP_002366323.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus B4264] gi|228907275|ref|ZP_04071134.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis IBL 200] gi|229069194|ref|ZP_04202485.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus F65185] gi|218158858|gb|ACK58850.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus B4264] gi|228713946|gb|EEL65830.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus F65185] gi|228852329|gb|EEM97124.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis IBL 200] Length = 934 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 T + + + +L + KE++ E++ Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215 >gi|18310673|ref|NP_562607.1| DNA polymerase III PolC [Clostridium perfringens str. 13] gi|168214476|ref|ZP_02640101.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens CPE str. F4969] gi|24418366|sp|Q8XJR3|DPO3_CLOPE RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|18145354|dbj|BAB81397.1| DNA polymerase III alpha subunit [Clostridium perfringens str. 13] gi|170714031|gb|EDT26213.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens CPE str. F4969] Length = 1449 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 87/221 (39%), Gaps = 6/221 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG SKND+IIEIGAV+L D +F F+ P + +L IT Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIV-DSFSTFVDPKVN-IPYKITELTSITQN 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127 + +P+ + +F +F N+ +AHNA FDVGFI + + Sbjct: 493 MVNGQPTIDEVLPKFMEFV--GNSVLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLA 550 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-FK 186 + +L + + HR+ A + +L + KM + Sbjct: 551 RYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEMDIHDVKTLN 610 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 +K + +I +L +++ + K H Sbjct: 611 EKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLVSMAHLDY 651 >gi|125973511|ref|YP_001037421.1| DNA polymerase III PolC [Clostridium thermocellum ATCC 27405] gi|125713736|gb|ABN52228.1| DNA polymerase III catalytic subunit, PolC type [Clostridium thermocellum ATCC 27405] Length = 1442 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 7/186 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL + D+I EIGAV++ + TF F+ P +KL GITD+ Sbjct: 429 FVVFDIETTGLSADKDKITEIGAVKIKEGKIV-DTFSTFVNPE-IPIPEFVVKLTGITDD 486 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + EF +F + +AHNA FD GFI + IN++ + +IDTL Sbjct: 487 MVSDAPTIDKVLPEFLEFVGT--SPLVAHNAVFDTGFIRHNARLINRN--VDNPVIDTLE 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++R+ P + + ++ + +S + H AL D+ +++IK + ++ N + Sbjct: 543 LSRQMFPELKKHKLDVVAKH-LGVSLENHHRALDDAKACGEIFIKCLEILAEKNVKTIDD 601 Query: 189 EDRFFK 194 F+ Sbjct: 602 IQNVFE 607 >gi|168208108|ref|ZP_02634113.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens E str. JGS1987] gi|170660599|gb|EDT13282.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens E str. JGS1987] Length = 1449 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 6/221 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG SKND+IIEIGAV+L D +F F+ P + +L IT Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIV-DSFSTFVDPKVN-IPYKITELTSITQN 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127 + +P+ + +F +F + + +AHNA FDVGFI + + Sbjct: 493 MVNGQPTIDEVLPKFMEFVGD--SVLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLA 550 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-FK 186 + +L + + HR+ A + +L + KM + Sbjct: 551 RYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEMDIHDVKTLN 610 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 +K + +I +L +++ + K H Sbjct: 611 EKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLVSMAHLDY 651 >gi|75760399|ref|ZP_00740443.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492110|gb|EAO55282.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 934 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 T + + + +L + KE++ E++ Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215 >gi|228996755|ref|ZP_04156392.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides Rock3-17] gi|228763074|gb|EEM11984.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides Rock3-17] Length = 930 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K DRI +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDRITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + AHN FD F+ EL++ ++ +I Sbjct: 62 DENLVKQAPLFCDVAPMVAELLQGAYFI--AHNVHFDWNFLKEELKQAGYGEVNCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ + ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALVTAELFLQFLNQLEKLPL 175 >gi|228900222|ref|ZP_04064453.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis IBL 4222] gi|228859391|gb|EEN03820.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis IBL 4222] Length = 934 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 T + + + +L + KE++ E++ Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215 >gi|119387836|ref|YP_918870.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] gi|119378411|gb|ABL73174.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] Length = 706 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 8/167 (4%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGL+ + D II+IGA+ +L+ F + P GR+ PE++ HGI E Sbjct: 518 VFDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDP-GREIPPESIPYHGIHPE 576 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +P + + F + + HN FD+ F+ + P L+ Sbjct: 577 MVQGQPRIAEVLPAFHA--YASDTVLVGHNVAFDMRFLQLKEAATGLRFDQPVLDTLLLA 634 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + H + L ++ R G+ I +H AL D+ + ++V+++++ Sbjct: 635 SIAQPH-EPSHSLEAIAARLGVEI--TQRHNALSDALVTAEVFLRLL 678 >gi|256003329|ref|ZP_05428320.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360] gi|281417714|ref|ZP_06248734.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20] gi|255992619|gb|EEU02710.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360] gi|281409116|gb|EFB39374.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20] gi|316940249|gb|ADU74283.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 1313] Length = 1442 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 7/186 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL + D+I EIGAV++ + TF F+ P +KL GITD+ Sbjct: 429 FVVFDIETTGLSADKDKITEIGAVKIKEGKIV-DTFSTFVNPE-IPIPEFVVKLTGITDD 486 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + EF +F + +AHNA FD GFI + IN++ + +IDTL Sbjct: 487 MVSDAPTIDKVLPEFLEFVGT--SPLVAHNAVFDTGFIRHNARLINRN--VDNPVIDTLE 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++R+ P + + ++ + +S + H AL D+ +++IK + ++ N + Sbjct: 543 LSRQMFPELKKHKLDVVAKH-LGVSLENHHRALDDAKACGEIFIKCLEILAEKNVKTIDD 601 Query: 189 EDRFFK 194 F+ Sbjct: 602 IQNVFE 607 >gi|145580424|pdb|2P1J|A Chain A, Crystal Structure Of A Polc-Type Dna Polymerase Iii Exonuclease Domain From Thermotoga Maritima gi|145580425|pdb|2P1J|B Chain B, Crystal Structure Of A Polc-Type Dna Polymerase Iii Exonuclease Domain From Thermotoga Maritima Length = 186 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 7/172 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGLD + D IIEIGAV++ + + + P R+ S ++ ++ GIT E Sbjct: 14 FVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDE-YHTLIKP-SREISRKSSEITGITQE 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++K S + EF F + + +AHNA FD F+ ++++ IDTL+ Sbjct: 72 MLENKRSIEEVLPEFLGFLED--SIIVAHNANFDYRFLRLWIKKVMGLD-WERPYIDTLA 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +A+ L+S+ ++ G+ H AL D+ + + V+++ + + Sbjct: 129 LAKSLLKLRSYSLDSVVEKLGLG--PFRHHRALDDARVTAQVFLRFVEMMKK 178 >gi|110801936|ref|YP_698978.1| DNA polymerase III PolC [Clostridium perfringens SM101] gi|110682437|gb|ABG85807.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens SM101] Length = 1449 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 87/221 (39%), Gaps = 6/221 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG SKND+IIEIGAV+L D +F F+ P + +L IT Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIV-DSFSTFVDPKVN-IPYKITELTSITQN 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127 + +P+ + +F +F N+ +AHNA FDVGFI + + Sbjct: 493 MVNGQPTIDEVLPKFMEFV--GNSVLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLA 550 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-FK 186 + +L + + HR+ A + +L + KM + Sbjct: 551 RYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEMDIHDVKTLN 610 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 +K + +I +L +++ + K H Sbjct: 611 EKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLVSMAHLDY 651 >gi|319892281|ref|YP_004149156.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius HKU10-03] gi|317161977|gb|ADV05520.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius HKU10-03] Length = 1435 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 100/208 (48%), Gaps = 13/208 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVKNGEIIDK-FERFSNPHEKLT-ETIKNLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD P + +EF + + A ++AHNA FD+GFI+ +R+ P + I Sbjct: 478 MLKDAPEIEEVLTEFKAWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSTNAVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + +++KM+ K Sbjct: 536 SRTINTSYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFVKMLAQ-------LKAL 586 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + ++ K + N KR +P + Sbjct: 587 DVHNHQDINKKLSNEDAYKRARPQHVTL 614 >gi|229818165|ref|ZP_04448447.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM 20098] gi|229784416|gb|EEP20530.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM 20098] Length = 186 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 5/166 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG+ DRIIEIGAV + + T + + P GR L GI+DE Sbjct: 19 YVVVDLETTGISPARDRIIEIGAVRVEHGTVTAE-YSKLVNP-GRPVGGFITGLTGISDE 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + ++ +F + +AHNA FD+ F+ R P I Sbjct: 77 MVGNASPIEAVLPDFLAHLRPSDTI-VAHNANFDINFLYDNCMRTLGKPFSYDFIDTLRL 135 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++ L L +R+GI +H L D+ + Y +M Sbjct: 136 SRALFPQERQHRLVDLIQRFGIA--DEEEHRGLSDALQTVECYERM 179 >gi|154502558|ref|ZP_02039618.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149] gi|153796750|gb|EDN79170.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149] Length = 1503 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 57/196 (29%), Positives = 86/196 (43%), Gaps = 7/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTG + D+IIEIGAV++ D + + F F+ P R E +L ITDE Sbjct: 467 YIVFDIETTGFSAIKDKIIEIGAVKVKDGAIVEK-FSTFVNPK-RPIPFEITQLTSITDE 524 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P S+ EF +F + +AHNA FDVGFI + +P S L+ Sbjct: 525 MVLDAPDIESVLPEFLEFVGD--GVLVAHNAGFDVGFIEQNCRYQEIEPDFVSVDTVALA 582 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + IS + H A+ D+ +++++K + N Sbjct: 583 RVLLPTLSKYKLNIVAKA---LGISLENHHRAVDDAGATAEIFVKFVEMLKDRNITTLKE 639 Query: 189 EDRFFKEEKKTVPNIS 204 +RF + + Sbjct: 640 MNRFGDMNVNAIRKLP 655 >gi|317500099|ref|ZP_07958334.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] gi|316898584|gb|EFV20620.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] Length = 1520 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 7/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTG S D IIE+GAV++ D T+R F F+ P R E L ITDE Sbjct: 483 YIVFDIETTGFSSIKDAIIEVGAVKVTDGKITDR-FSTFVNPK-RPIPFEITNLTSITDE 540 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + +F + + +AHNA FDVGFI + + L+ Sbjct: 541 MVMDSPTIDVVLPQFLE--FAGDGVLVAHNAGFDVGFIEQNCRSLGLSDEFVYLDTVALA 598 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + IS + H A+ D+ +++++K + G Sbjct: 599 RVLLPTLSKYKLNIVAKA---LNISLENHHRAVDDAEATAEIFVKFTEMLKKDQVGTLKE 655 Query: 189 EDRFFKEEKKTVPNIS 204 +R+ + + Sbjct: 656 VNRYGDRNVNAIRKMP 671 >gi|218680719|ref|ZP_03528616.1| DNA polymerase III subunit epsilon [Rhizobium etli CIAT 894] Length = 186 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 76/151 (50%), Positives = 100/151 (66%), Gaps = 5/151 (3%) Query: 94 WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS 153 WIAHNA FD+GFINAEL RI P+ P R++DTLS+ARRKHP N L++LC+RYGI S Sbjct: 31 WIAHNATFDMGFINAELARIGLPPILPERVVDTLSMARRKHPMGPNSLDALCRRYGIDNS 90 Query: 154 HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN----EDRFFKEEKKTVPNISLLKRD 209 HR+KHGALLDS LL++VYI+M+ G Q FG T R E+ V S+L+R Sbjct: 91 HRTKHGALLDSELLAEVYIEMIG-GRQAAFGLSTATSGQNGRGDMAEEDDVVIASVLERP 149 Query: 210 KPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 +PL R+++ E H+ + LG+ IW +Y Sbjct: 150 RPLAPRLSQSEAQAHEALVAKLGEKGIWAKY 180 >gi|325660790|ref|ZP_08149418.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA] gi|325472864|gb|EGC76074.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA] Length = 1492 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 7/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + DRIIEIGAV++ D + +R F F+ P E +L ITD+ Sbjct: 463 FVVFDIETTGFSAAEDRIIEIGAVKITDGAIVDR-FSTFVNPE-VPIPFEIQQLTHITDD 520 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P F DF E + +AHNA FDVGFI R+ + S L+ Sbjct: 521 MVLEAPKIEEALPAFLDFVGE--SALVAHNAGFDVGFIEQNCVRLGRSRTFTSVDTVGLA 578 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + IS + H A+ D+ +++Y+K + + Sbjct: 579 RVLLPTLSKYKLN---IVAKALNISLENHHRAVDDAAATAEIYVKFIEMLKERGMTTLKE 635 Query: 189 EDRFFKEEKKTVPNIS 204 + F + + Sbjct: 636 VNAFGDMNPDAIKKMP 651 >gi|258511479|ref|YP_003184913.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478205|gb|ACV58524.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 240 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 13/231 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D ETTGL + R++E+ VE+ + + + P G PEA +H ITD Sbjct: 7 RFVVVDTETTGLPPEG-RVVELALVEVGLECEPQIVYSALVDP-GCPIPPEASAVHHITD 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + KP S ++ + + + A +AHNA+FD G + + Sbjct: 65 RDVAGKPRLSQVWPKVLGYIGD--AILVAHNAEFDRGMLPETGRPWICS---------KR 113 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + ++ L GI + H AL D+ + + V+ + + + + Sbjct: 114 LAQHLWRDAPKHSNQVLRYWLGIDVEVGQPHRALGDAIVTAHVFQRELRAYLEAGYPDDV 173 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 +E F E V + K + + LD + +Q L + W Sbjct: 174 DELIAFAESPIEVQTMPFGKHKGMPLKEVPLDYLDWALRNLQDLSPDLRWS 224 >gi|331087674|ref|ZP_08336601.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA] gi|330410366|gb|EGG89799.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA] Length = 1520 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 7/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTG S D IIE+GAV++ D T+R F F+ P R E L ITDE Sbjct: 483 YIVFDIETTGFSSIKDAIIEVGAVKVTDGKITDR-FSTFVNPK-RPIPFEITNLTSITDE 540 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + +F + + +AHNA FDVGFI + + L+ Sbjct: 541 MVMDSPTIDVVLPQFLE--FAGDGVLVAHNAGFDVGFIEQNCRSLGLSDEFVYLDTVALA 598 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + IS + H A+ D+ +++++K + G Sbjct: 599 RVLLPTLSKYKLNIVAKA---LNISLENHHRAVDDAEATAEIFVKFTEMLKKDQVGTLKE 655 Query: 189 EDRFFKEEKKTVPNIS 204 +R+ + + Sbjct: 656 VNRYGDRNVNAIRKMP 671 >gi|228920352|ref|ZP_04083698.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839274|gb|EEM84569.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 934 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 T + + + +L + KE++ E++ Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEDIAEYE 215 >gi|323464622|gb|ADX76775.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus pseudintermedius ED99] Length = 1435 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 100/208 (48%), Gaps = 13/208 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVKNGEIIDK-FERFSNPHEKLT-ETIKNLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD P + +EF + + A ++AHNA FD+GFI+ +R+ P + I Sbjct: 478 MLKDAPEIEEVLTEFKAWVGD--AIFVAHNASFDMGFIDTGYERLGFGPSANAVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ LN L K+YG+ H A+ D+ + +++KM+ K Sbjct: 536 SRTINTSYGKHGLNFLAKKYGVE--LTQHHRAIYDTEATAYIFVKMLAQ-------LKAL 586 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + ++ K + N KR +P + Sbjct: 587 DVHNHQDINKKLSNEDAYKRARPQHVTL 614 >gi|253579638|ref|ZP_04856907.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849139|gb|EES77100.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 1489 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 12/225 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFDIETTG S +IIEIGAV + + T+R F F+ P +L I D Sbjct: 461 RFVVFDIETTGFSSLTCQIIEIGAVLVENGEITDR-FSTFVNPK-VPIPFRIEQLTSIND 518 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P+ + +F + ++A +AHNA FD+GFI R+ + Sbjct: 519 SMVMDAPTIEEVLPKFLE--FSKDAVMVAHNADFDMGFIMKNCDRLGIAHDFTYVDTVGM 576 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + +R L+++ K G++ + H A+ D+ +++++K + + + Sbjct: 577 ARFLLPA-LNRFKLDTVAKAVGVS--LENHHRAVDDAACTAEIFVKFVKMLEERDIRDVD 633 Query: 188 NEDRFFKEEKKTVPNIS-----LLKRDKPLFTRITKEELDEHDKT 227 + T+ + + R++ + K H K Sbjct: 634 MLNEQGAVSVNTIRKLPTYHVIIFARNETGRINLYKLVSQSHLKY 678 >gi|225163449|ref|ZP_03725765.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] gi|224801949|gb|EEG20229.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] Length = 197 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 5/175 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M ++FD+ETTG + + II+I AV L+D ++ TF ++ P R +L GIT Sbjct: 1 MNLVIFDLETTGFSPRWNDIIQIAAVRLVDGRISDETFSTYVSP-RRPVPDHITELTGIT 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D + D P S F F + +AHN AE ++ P+ P R ID Sbjct: 60 DADVADAPETSDALRAFARFVGDVGPTTLVAHNGHRFDMRFIAESCTLHGLPMRPIRFID 119 Query: 126 TLSIARRKHPSSRNDLNSL---CKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 ++ ++++ P+ + I+ +H A D HLL++ +M+ Sbjct: 120 SIWLSKKLWPAESLHNLDVIVERLGIETGITGHRRHDARADVHLLANAVRRMIQN 174 >gi|331085480|ref|ZP_08334565.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407718|gb|EGG87216.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA] Length = 1492 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 7/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + DRIIEIGAV++ D + +R F F+ P E +L ITD+ Sbjct: 463 FVVFDIETTGFSAAEDRIIEIGAVKITDGAIVDR-FSTFVNPE-VPIPFEIQQLTHITDD 520 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P F DF E + +AHNA FDVGFI R+ + S L+ Sbjct: 521 MVLEAPKIEEALPAFLDFVGE--SALVAHNAGFDVGFIEQNCVRLGRSRTFTSVDTVGLA 578 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + IS + H A+ D+ +++Y+K + + Sbjct: 579 RVLLPTLSKYKLN---IVAKALNISLENHHRAVDDAAATAEIYVKFIEMLKERGMTTLKE 635 Query: 189 EDRFFKEEKKTVPNIS 204 + F + + Sbjct: 636 VNAFGDMNPDAIKKMP 651 >gi|237734614|ref|ZP_04565095.1| DNA-directed DNA polymerase [Mollicutes bacterium D7] gi|229382434|gb|EEO32525.1| DNA-directed DNA polymerase [Coprobacillus sp. D7] Length = 1440 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 4/174 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL +D I E GAV++ + +R Q+F+ P G+ S L IT++ Sbjct: 403 YVSFDLETTGLSVIHDGITEFGAVKIKNGEVIDR-LQMFVNP-GKSISSRITNLTSITND 460 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++++P+ ++ +FF++ +AHNA FD+GF+N L+R N + I Sbjct: 461 MVRNEPTIDALLPRIIEFFDD--CILVAHNANFDIGFLNENLRRNNMPEITNPIIDSLAL 518 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 P L ++C+ Y + H A D+ +L DV+ M+ Q Sbjct: 519 ARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAEVLGDVFNMMLHQIMQSG 572 >gi|228990657|ref|ZP_04150622.1| DnaQ family exonuclease/DinG family helicase [Bacillus pseudomycoides DSM 12442] gi|228769183|gb|EEM17781.1| DnaQ family exonuclease/DinG family helicase [Bacillus pseudomycoides DSM 12442] Length = 930 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K DRI +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDRITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + AHN FD F+ EL++ ++ +I Sbjct: 62 DENLVKQAPLFCDVAPMVAELLQGAYFV--AHNVHFDWNFLKEELKQAGYGEVNCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ + ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALVTAELFLQFLNQLEKLPL 175 >gi|262037779|ref|ZP_06011221.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia goodfellowii F0264] gi|261748251|gb|EEY35648.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia goodfellowii F0264] Length = 1438 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 4/201 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGLD D+IIEIGA++L + F VF+ P E L IT++ Sbjct: 412 YVVFDIETTGLDPYKDKIIEIGAIKLKGKEIIDE-FSVFINPE-IDIPEEITALTNITND 469 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD ++ +F +F + AHNAKFDVGFIN + + + + + Sbjct: 470 MVKDAEKVETVLPKFLEFCKDTTVV--AHNAKFDVGFINQKAKNLGLEYSPSVIDTLHWA 527 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + +H + + ++ M++ + Sbjct: 528 RILLPEQKRFGLKYIANYFNVVLDNHHRAVDDAKATAEIFQKFLNMVLSRGVLKLSEINQ 587 Query: 189 EDRFFKEEKKTVPNISLLKRD 209 E + + T+ + L+K Sbjct: 588 ELQTNIQNADTLNTMILVKNQ 608 >gi|227890631|ref|ZP_04008436.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741] gi|227867569|gb|EEJ74990.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741] Length = 1451 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 6/189 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD ETTGL ++ D++IE+ AV++ + TF+ F+ P + ++ + Sbjct: 433 YVIFDTETTGLSAQYDKVIELAAVKMEKGNVI-DTFEEFIDPG---HPLSQTTINLTSIT 488 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S ++ + HNA FDV F+N +R N + + I Sbjct: 489 DDMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPWIDTLPL 548 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 LN+L K+ I + H H A+ D+ +Y M+ + + + Sbjct: 549 ARYLYPEMKGFRLNTLAKKLNIKLEH--HHRAIYDAEATGFIYYAMLKDAEEKQILYHDD 606 Query: 189 EDRFFKEEK 197 ++ E Sbjct: 607 FNKHVGEND 615 >gi|110598328|ref|ZP_01386602.1| DNA polymerase III, epsilon subunit [Chlorobium ferrooxidans DSM 13031] gi|110340026|gb|EAT58527.1| DNA polymerase III, epsilon subunit [Chlorobium ferrooxidans DSM 13031] Length = 219 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 7/172 (4%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV L + R FQ + P G + S GIT+E Sbjct: 10 VVLDFETTGLSPEYGDRAIEIGAVLLEEGEIVGR-FQKLMNP-GFRISQFIEGYTGITNE 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK +P + +EF +F +N AHNA FD F++ EL+R + + S L Sbjct: 68 MLKGQPCCEEVMAEFSEFIAGRNIV--AHNAAFDRRFLDFELKRAKRAY-EGSCCCSLLV 124 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R S + L +L GI H AL D+ + + +++ M+ + Sbjct: 125 SRRIYQDSPNHRLQTLVSHAGIR-QTGVFHRALADAEMTAQLWLSMIERIRR 175 >gi|148244527|ref|YP_001219221.1| DNA polymerase III epsilon subunit [Candidatus Vesicomyosocius okutanii HA] gi|146326354|dbj|BAF61497.1| DNA polymerase III epsilon subunit [Candidatus Vesicomyosocius okutanii HA] Length = 223 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 7/226 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGI 65 R IV D ETTG+ + RIIEIG +E++D T + ++ PN ++++HGI Sbjct: 3 RLIVLDTETTGIKPSEGHRIIEIGCIEIIDRQITKNNKYHEYIQPNRNVGD--SVRIHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD+FL KP F + EF + E +L IN+ D IID Sbjct: 61 TDKFLTKKPKFKEVVEEFLAYIKETTLIIHNAPFDLGFLNHELKLIGINERIEDKCTIID 120 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L +++++ P + ++L+SLC+R+ I S R+ HGALLD +L+ VY+ M G S + Sbjct: 121 SLELSKQQRPGTLHNLDSLCRRFKIDSSARTVHGALLDVQILAQVYLAMTGGQSTLFSND 180 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 KT ++ N ++ K K+EL H + L Sbjct: 181 KTINEQDNNTNNIVRINNAIGK---IKIVYANKKELAAHADYFKKL 223 >gi|225568406|ref|ZP_03777431.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM 15053] gi|225162634|gb|EEG75253.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM 15053] Length = 1487 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 92/241 (38%), Gaps = 30/241 (12%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG S D+IIEIGAV++ T F F+ P +L GITD+ Sbjct: 448 FVVFDLETTGFSSIKDKIIEIGAVKVEGGRIT-EKFSTFVDPK-IPIPFRITQLTGITDQ 505 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P + F + +A +AHNA FDVGFI+ + ++ P + +S Sbjct: 506 MVMDAPEIEAALPAFLE--FAGDAALVAHNAGFDVGFIDQNCRYMDITPDFTAVDTVAMS 563 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + IS + H A+ D+ ++++++ + + Sbjct: 564 RILLPTLSKFKLNVVAKA---LNISLENHHRAVDDAGATAEIFVRFVDMLKERGIHTLAR 620 Query: 189 EDRFFKEEKKTVPNISLL------KRDKPLF-----------------TRITKEELDEHD 225 ++F + + K + RI K EL H Sbjct: 621 LNQFGSSNANAIRKLPSFHVIILAKNETGRVNLYKLISKSHLDYFGRQPRIPKSELSRHR 680 Query: 226 K 226 + Sbjct: 681 E 681 >gi|167756906|ref|ZP_02429033.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402] gi|167703081|gb|EDS17660.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402] Length = 1445 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 4/174 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL +D I E GAV++ + +R Q+F+ P G+ S L IT++ Sbjct: 408 YVSFDLETTGLSVIHDGITEFGAVKIKNGEVIDR-LQMFVNP-GKSISSRITNLTSITND 465 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++++P+ ++ +FF++ +AHNA FD+GF+N L+R N + I Sbjct: 466 MVRNEPTIDALLPRIIEFFDD--CILVAHNANFDIGFLNENLRRNNMPEITNPIIDSLAL 523 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 P L ++C+ Y + H A D+ +L DV+ M+ Q Sbjct: 524 ARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAEVLGDVFNMMLHQIMQSG 577 >gi|237756693|ref|ZP_04585197.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense SS-5] gi|237691145|gb|EEP60249.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense SS-5] Length = 205 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 5/196 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL+ K IIEI A+++ T F + P+ KL GIT+ + Sbjct: 13 VVDLETTGLNPKTSEIIEIAAIKVEGNVIT-EKFHTLVKPSIGFIPEHITKLTGITNPLV 71 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP +F F + +N+ IAHNAKFD+ F+N ++ + I + Sbjct: 72 IDKPKIEQVFPHFLE--FTKNSIIIAHNAKFDISFLNEASFQLTGKLIQNPVICTLVLAN 129 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R L +L + I + H AL D+ + +++ K + + Sbjct: 130 RLFPDLKSKSLTNLAYHFNIPYHRK--HRALADAEVTYELFKKFVEYLQNYKVNKVIDLI 187 Query: 191 RFFKEEKKTVPNISLL 206 R + +P+ Sbjct: 188 RLSNGKDLKLPSKRRR 203 >gi|312127164|ref|YP_003992038.1| DNA polymerase III subunit alpha [Caldicellulosiruptor hydrothermalis 108] gi|311777183|gb|ADQ06669.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor hydrothermalis 108] Length = 1402 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG DS+ DRIIEIGAV++ + T + F F+ P G+ +L GI + Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITEK-FSTFVDPEGK-IPVRISELTGIYQD 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P S EF + +AHNA+FD+GF+ Q LS Sbjct: 448 MVDKAPKLSDAILEFEK--FASGSVLVAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELS 505 Query: 129 IARRKHPSSRNDLN-SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 SS + + HR+ A + + + ++ G + + Sbjct: 506 RRLLTDLSSHKLNKVAEFLNVELKHHHRADSDAETTAGIFISLVERLKARGYKWLKELNS 565 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 E + K + ++L +++ + K H + Sbjct: 566 IESNAKADLKSHSYHATILVKNQQGLKNLYKLVSYSHLEY 605 >gi|229075504|ref|ZP_04208492.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18] gi|228707600|gb|EEL59785.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18] Length = 318 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 71 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGFPEPKNKVIDTVFL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169 >gi|300214373|gb|ADJ78789.1| DNA polymerase III polC-type (PolIII) [Lactobacillus salivarius CECT 5713] Length = 1444 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 6/189 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD ETTGL ++ D++IE+ AV++ + TF+ F+ P + ++ + Sbjct: 426 YVIFDTETTGLSAQYDKVIELAAVKMEKGNVI-DTFEEFIDPG---HPLSQTTINLTSIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S ++ + HNA FDV F+N +R N + + I Sbjct: 482 DDMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPWIDTLPL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 LN+L K+ I + H H A+ D+ +Y M+ + + + Sbjct: 542 ARYLYPEMKGFRLNTLAKKLNIKLEH--HHRAIYDAEATGFIYYAMLKDAEEKQILYHDD 599 Query: 189 EDRFFKEEK 197 ++ E Sbjct: 600 FNKHIGEND 608 >gi|169827163|ref|YP_001697321.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41] gi|168991651|gb|ACA39191.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41] Length = 1468 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 6/175 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ D ++ ++ F P+ S ++L GITD+ Sbjct: 453 YVVFDVETTGLSTAYDTIIELAAVKIKDGHVIDK-YESFANPH-HPLSATTIELTGITDD 510 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + EF F + +AHNA FD+GF+ ++ + I Sbjct: 511 MVRHAPEVEQVIKEFHAFIGD--GIVVAHNASFDIGFLYTGYKKFGLEGTTHPVIDTLEL 568 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + LN+LCK++ I H A+ D+ + ++++ ++ Sbjct: 569 ARLLYPTMKNHRLNTLCKKFNIE--LTQHHRAIYDTEATGYLLLQLLKDADELVI 621 >gi|148380379|ref|YP_001254920.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. ATCC 3502] gi|153932951|ref|YP_001384598.1| DNA polymerase III PolC [Clostridium botulinum A str. ATCC 19397] gi|153935522|ref|YP_001388114.1| DNA polymerase III PolC [Clostridium botulinum A str. Hall] gi|148289863|emb|CAL83971.1| DNA polymerase III PolC-type [Clostridium botulinum A str. ATCC 3502] gi|152928995|gb|ABS34495.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A str. ATCC 19397] gi|152931436|gb|ABS36935.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A str. Hall] Length = 1432 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 6/192 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG SKND+IIEIGAV++ +R F F+ P R + +L ITD+ Sbjct: 418 FVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127 + DK + I F DF + + +AHNA FDV FIN + + + + T Sbjct: 476 MVDDKEAIDKILPRFIDFIGD--SVVVAHNASFDVSFINKNCKDLKIEFENSVMDTVTLS 533 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + ++ + + HR+ A + +L + +M+ I Sbjct: 534 RFLFPELKRYKLNVIAKHLGISLENHHRAVDDAKATADILLKSF-EMLREKEIITLHSLN 592 Query: 188 NEDRFFKEEKKT 199 E KK Sbjct: 593 KEFLGNINIKKE 604 >gi|116515093|ref|YP_802722.1| DNA polymerase III, e subunit [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256947|gb|ABJ90629.1| DNA polymerase III, e subunit [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 231 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 108/246 (43%), Gaps = 28/246 (11%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL------------DYSKTNRTFQVFL 48 MI+KN R++ DIETTG++ G + L + T R +L Sbjct: 1 MIKKNL-RQVFLDIETTGMNKY-------GCIYLNHKIIEIGIIETINRKYTGRYIHYYL 52 Query: 49 CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFIN 107 P R A K+HGI++ FL +KP+F I+ E ++F N + Sbjct: 53 YPQ-RSIESSAYKIHGISESFLSNKPTFKDIYKEIFNFIKNSEIIVHNSNFDISFLDYEF 111 Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 L S I DTL IAR+ P +N+L++LC RY IT +R+ H ALLD+ +L Sbjct: 112 FLLNIGINKIKTFSTITDTLFIARKLFPGKKNNLDALCARYKITNINRNFHSALLDAKIL 171 Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 +Y+ M +INF R + ++ K N + TK+E H + Sbjct: 172 MKLYMYMTSIQKEINF------SRNYIKKIKIPKNFFKYYKKPLKIIFATKKENQTHLEY 225 Query: 228 IQTLGK 233 ++ + K Sbjct: 226 MKKIIK 231 >gi|331269632|ref|YP_004396124.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925] gi|329126182|gb|AEB76127.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum BKT015925] Length = 1443 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 69/181 (38%), Gaps = 4/181 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG S D+IIEIGAV++ + + +F F+ P + +L IT++ Sbjct: 430 FVVFDLETTGFSSAYDKIIEIGAVKIKNGNII-DSFSTFVNPEIK-VPYNITELTSITND 487 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + SI +F +F + N N I+ + + Sbjct: 488 DVKNADTIDSILPKFIEFCGDSVLVAHNANFDMSFIRKNCNDLNIDINY-TVMDTVPLAK 546 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + + + HR+ A +L + K++ + Sbjct: 547 FLFPELKRYKLNTIAKHLGVSLENHHRAVDDAKATGDILLCCF-KLLDDMKITSLDSLNK 605 Query: 189 E 189 E Sbjct: 606 E 606 >gi|154686075|ref|YP_001421236.1| DNA polymerase III PolC [Bacillus amyloliquefaciens FZB42] gi|154351926|gb|ABS74005.1| PolC [Bacillus amyloliquefaciens FZB42] Length = 1437 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 5/197 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKIRGGEIIDK-FEAFANPH-HPLSATTIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P + +F ++ + +AHNA FD+GF+N +R+ K + +IDTL Sbjct: 479 MVRDAPDVVDVVRDFKEWIGD--DVLVAHNASFDMGFLNVAYKRLLKTEKAKNPVIDTLE 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +AR +P +N + I H A+ D+ + +KM+ ++ + + Sbjct: 537 LARFLYPEFKNHRLNT-LCKKFDIELTQHHRAVFDAEATGYLLLKMLKDAAEKDIFYHDQ 595 Query: 189 EDRFFKEEKKTVPNISL 205 + + + Sbjct: 596 LNENMGQSNAYQRSRPY 612 >gi|332306380|ref|YP_004434231.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173709|gb|AEE22963.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 788 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 2/123 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG RI EIGAV++++ ++ + P R+ +L GI+++ Sbjct: 623 YVVVDVETTGGCKPGHRITEIGAVKVINGRVV-DSWSSLINPE-RRVPHFITRLTGISND 680 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P F + + F + N + + + + + Sbjct: 681 MVEEAPLFCEVIDDLECFMQDCIFVAHNVNFDYGFFKLEYARLERSFSMPKLCTVREMRK 740 Query: 129 IAR 131 Sbjct: 741 YYP 743 >gi|229098054|ref|ZP_04229002.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29] gi|228685245|gb|EEL39175.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29] Length = 318 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 71 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGFPEPKNKVIDTVFL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169 >gi|313905074|ref|ZP_07838444.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6] gi|313470144|gb|EFR65476.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6] Length = 1536 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 10/212 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFDIETTGL + +IIEIGAV + +R F F+ P + +L ITD Sbjct: 501 NYVVFDIETTGLSNLTCKIIEIGAVRVEHGEVVSR-FSEFINPE-VPIPFKITELTSITD 558 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++D P I +F +F + A +AHNA FD GFI E +R D + Sbjct: 559 AMVEDAPVIEEILPKFREFCGD--AVLVAHNADFDTGFIKMECERQKLDWEFTYVDTVAM 616 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + SR L+++ K G+ + H H A+ D+ + +++K + + N Sbjct: 617 AQMLLPG-LSRFKLDTVAKAVGVPLEH--HHRAVDDAECTAWIFVKFVEMLKERNI---L 670 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + D KE I +K + +E Sbjct: 671 DLDALNKEGSVNQNAIRKMKSHHVIILAKNEE 702 >gi|269963944|ref|ZP_06178254.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831319|gb|EEZ85468.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 204 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 9/177 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV+++D +FQ + P G + SP GIT+ Sbjct: 8 VVLDFETTGLSPNMGDRAIEIGAVKIVDGEVV-DSFQQLMNP-GFRVSPFIEGYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L+ PS + + F +F +N IAHNA FD F++AEL+RI+ + + + Sbjct: 66 MLRTAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERIDCGYSGEFACSLLVA 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + PS + K + H AL D+ + + +++ M+ Q Sbjct: 124 RRLIQDAPSHKLGELVRYKNI---ENDGVFHRALADAQVTAKLWLLMVEELEQSGIA 177 >gi|308173621|ref|YP_003920326.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7] gi|307606485|emb|CBI42856.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM 7] gi|328553447|gb|AEB23939.1| DNA polymerase III PolC [Bacillus amyloliquefaciens TA208] gi|328911762|gb|AEB63358.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3] Length = 1437 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 5/197 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKIRGGEIIDK-FEAFANPH-HPLSATTIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P + +F ++ + +AHNA FD+GF+N +R+ K + +IDTL Sbjct: 479 MVRDAPDVVDVVRDFKEWIGD--DVLVAHNASFDMGFLNVAYKRLLKTEKAKNPVIDTLE 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +AR +P +N + I H A+ D+ + +KM+ ++ + + Sbjct: 537 LARFLYPEFKNHRLNT-LCKKFDIELTQHHRAVFDAEATGYLLLKMLKDAAEKDIFYHDQ 595 Query: 189 EDRFFKEEKKTVPNISL 205 + + + Sbjct: 596 LNENMGQSNAYQRSRPY 612 >gi|210622608|ref|ZP_03293268.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275] gi|210154109|gb|EEA85115.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275] Length = 1426 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 10/219 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG + ND+I EIGAV++ D+ +R F + P + S +L GIT+E Sbjct: 412 FVVFDLETTGFSNINDKITEIGAVKIRDFEIVDR-FSELVNPE-KDISYRVQELTGITNE 469 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KDKP+ I +F +F + +AHNA FD GFI + + + + L+ Sbjct: 470 MVKDKPTIEEILPKFMEFVGD--DVLVAHNADFDTGFIMQKCKEQGLEYKNKKVDTLMLA 527 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + + + H A+ D+ ++++IK + + ++ Sbjct: 528 RIMLPNLKRYKLDKVAKE---VGVQLLNHHRAVDDAEATANIFIKFLGMLKKQGVEKLSD 584 Query: 189 EDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEH 224 + + K +I+L+ +++ + K D H Sbjct: 585 VNTVLGKVDYTKLKTHHITLIAKNQTGIKNLYKIVSDAH 623 >gi|160893350|ref|ZP_02074137.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50] gi|156865042|gb|EDO58473.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50] Length = 1514 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 7/194 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTGL K ++IIEIGAV++ D + +R F F+ P +L ITDE Sbjct: 458 YIVFDIETTGLSQKKNKIIEIGAVKVKDGEEIDR-FSEFINPE-EPIPYSIEQLTSITDE 515 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+ I +F +F + +AHNA FD GFI + + + TLS Sbjct: 516 MVMHAPTVDVILPKFLEFCGD--DIVVAHNAAFDTGFIKKNAKDLGMKFDNTIMDTMTLS 573 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +CK + H H A+ D++ + +++K+ + + Sbjct: 574 HVLLPELGKFTLDR-VCKALNVKNEH--HHRAVDDANATAKIFVKLYEMLVERGVKTVED 630 Query: 189 EDRFFKEEKKTVPN 202 + T+ Sbjct: 631 VNELGSASDDTIKK 644 >gi|302525360|ref|ZP_07277702.1| DNA-directed DNA polymerase [Streptomyces sp. AA4] gi|302434255|gb|EFL06071.1| DNA-directed DNA polymerase [Streptomyces sp. AA4] Length = 572 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 67/174 (38%), Gaps = 4/174 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG D I EIGAV++ F + P G P+ ++L GIT Sbjct: 26 FVVFDLETTGTKPGPDGITEIGAVKVRAGQVLGE-FATLVNP-GTPIPPQIVELTGITQA 83 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P + F +F + A +AHN+ FD F+ A + P+ + Sbjct: 84 MVYDAPRIERVLPAFLEFISG--AVLVAHNSGFDTSFMKAACEGHGYVWPRPTVVCTVKL 141 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R + R H AL D+ +DV ++ + Sbjct: 142 ARRVIPREEARSYRLSSLSMLLGSRTRPTHRALDDARATTDVLHALLERVGNLG 195 >gi|301300283|ref|ZP_07206492.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852124|gb|EFK79799.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus salivarius ACS-116-V-Col5a] Length = 1444 Score = 78.8 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 6/189 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD ETTGL ++ D++IE+ AV++ + TF+ F+ P + ++ + Sbjct: 426 YVIFDTETTGLSAQYDKVIELAAVKMEKGNVI-DTFEEFIDPG---HPLSQTTINLTSIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S ++ + HNA FDV F+N +R N + + I Sbjct: 482 DDMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPWIDTLPL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 LN+L K+ I + H H A+ D+ +Y M+ + + + Sbjct: 542 ARYLYPEMKGFRLNTLAKKLNIKLEH--HHRAIYDAEATGFIYYAMLKDAEEKQILYHDD 599 Query: 189 EDRFFKEEK 197 ++ E Sbjct: 600 FNKHVGEND 608 >gi|90961543|ref|YP_535459.1| DNA polymerase III PolC [Lactobacillus salivarius UCC118] gi|122449173|sp|Q1WUF9|DPO3_LACS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|90820737|gb|ABD99376.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118] Length = 1444 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 6/189 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD ETTGL ++ D++IE+ AV++ + TF+ F+ P + ++ + Sbjct: 426 YVIFDTETTGLSAQYDKVIELAAVKMEKGNVI-DTFEEFIDPG---HPLSQTTINLTSIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S ++ + HNA FDV F+N +R N + + I Sbjct: 482 DDMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPWIDTLPL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 LN+L K+ I + H H A+ D+ +Y M+ + + + Sbjct: 542 ARYLYPEMKGFRLNTLAKKLNIKLEH--HHRAIYDAEATGFIYYAMLKDAEEKQILYHDD 599 Query: 189 EDRFFKEEK 197 ++ E Sbjct: 600 FNKHVGEND 608 >gi|228984721|ref|ZP_04144893.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774919|gb|EEM23313.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 934 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|311030091|ref|ZP_07708181.1| DNA polymerase III PolC [Bacillus sp. m3-13] Length = 1437 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ +R F+ F P+ S + L GITD+ Sbjct: 422 YVVFDVETTGLSAMYDTIIELAAVKVKGGEIIDR-FESFANPH-HPLSATTINLTGITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P + +F ++ + +AHNA FD+GF+N QRI I Sbjct: 480 MVQNAPEVGDVLKQFSEWMQD--DILVAHNASFDMGFLNIGFQRIGLGKAKNPVIDTLEL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK++ I H A+ D+ + +KM+ + F Sbjct: 538 GRLLFPSLKNHRLNTLCKKF--DIELTQHHRAIYDAEATGYLLVKMLKDAFEKGITFHDE 595 Query: 189 EDRFFKEEKKTVPNIS 204 + Sbjct: 596 LNEHSGTTDAYKRARP 611 >gi|229104149|ref|ZP_04234821.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28] gi|228679166|gb|EEL33371.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28] Length = 315 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGFPEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166 >gi|295107656|emb|CBL05199.1| DNA polymerase III, alpha subunit (gram-positive type) [Gordonibacter pamelaeae 7-10-1-b] Length = 445 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 6/175 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + I FD+ETTGL DRI+EIGA+ D R+F + P G + S EA +++ I++ Sbjct: 7 KFIAFDVETTGLSEYADRIVEIGAICFEDRKPM-RSFSTLVNP-GVRISVEASRINHISN 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 E L + PS + + +F +F + N+ AHNA+FD+GF+ L+R+ Sbjct: 65 EMLGNAPSENQAYEQFVEFLGDALAGNSILCAHNARFDMGFLKNTLERLGYSGTINYVDT 124 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +LS ++ + + I + + + + + + Sbjct: 125 LSLSRRLISD-LPNYKQPTVAQYFNIQNNAEHRAYGDAEVCGMMFCKLASLGEQR 178 >gi|52141929|ref|YP_084901.1| DNA polymerase III subunit epsilon [Bacillus cereus E33L] gi|51975398|gb|AAU16948.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L] Length = 315 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 76/206 (36%), Gaps = 7/206 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 9 NYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITN 66 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 67 YRVSDAPTIEEVLPVFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVF 124 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + + L +L + G S H A D + VY K + Sbjct: 125 LAKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKLNK 181 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF 213 + + KRD Sbjct: 182 EALDETVVYEAVKEILVRNKRDIEWI 207 >gi|49477263|ref|YP_035758.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196033564|ref|ZP_03100976.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus W] gi|218902753|ref|YP_002450587.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH820] gi|49328819|gb|AAT59465.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195993998|gb|EDX57954.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus W] gi|218538657|gb|ACK91055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH820] Length = 934 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|229121184|ref|ZP_04250421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus 95/8201] gi|228662303|gb|EEL17906.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus 95/8201] Length = 934 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|218898970|ref|YP_002447381.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9842] gi|228902321|ref|ZP_04066478.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222] gi|228966763|ref|ZP_04127807.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto str. T04001] gi|218545449|gb|ACK97843.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9842] gi|228792862|gb|EEM40420.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto str. T04001] gi|228857290|gb|EEN01793.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222] Length = 1433 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 11/211 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + + R L T + Sbjct: 592 LNDSMGQGDAYKRG-----RPSHLTLLATSD 617 >gi|229220849|ref|YP_287921.2| DNA polymerase III PolC [Mycoplasma hyopneumoniae 7448] gi|144575503|gb|AAZ53898.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448] Length = 1469 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 3/202 (1%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K++ ++FD+ETTGL + + IIE GAV L + + + Q F+ P G+ Sbjct: 408 KLKFVIFDLETTGLSAFYNEIIEFGAVVLQNGIEIEKH-QFFIKPTGKIPPAITKITGIS 466 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + S+ + + + +AHNA FD F+ ++ K L I Sbjct: 467 QKMIDETAISWEIALEKITKIIKD--SVLVAHNAAFDFSFLEQFFRQKAKKSLKNPIIDT 524 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L ++ KRY I + H A D+ +L+ ++ + N Sbjct: 525 LEVSRFLNPNEKSHSLKNVAKRYEIEYAEEIAHRADYDAKILTTIWKNFLAELKSQNIND 584 Query: 186 KTNEDRFFKEEKKTVPNISLLK 207 T+ + P K Sbjct: 585 LTSLSEIKNSIFELRPEKVFPK 606 >gi|229117071|ref|ZP_04246451.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3] gi|228666360|gb|EEL21822.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3] Length = 315 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGFPEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166 >gi|229172279|ref|ZP_04299843.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3] gi|228611267|gb|EEK68525.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3] Length = 934 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL+ + ++ Sbjct: 62 DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRWAGYTEVHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|228909642|ref|ZP_04073465.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200] gi|228849931|gb|EEM94762.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200] Length = 1435 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 11/211 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + I Sbjct: 478 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 536 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 593 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + + R L T + Sbjct: 594 LNDSMGQGDAYKRG-----RPSHLTLLATSD 619 >gi|228938753|ref|ZP_04101356.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971635|ref|ZP_04132257.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978244|ref|ZP_04138621.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis Bt407] gi|228781261|gb|EEM29462.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis Bt407] gi|228788048|gb|EEM36005.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820928|gb|EEM66950.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939259|gb|AEA15155.1| ATP-dependent helicase DinG [Bacillus thuringiensis serovar chinensis CT-43] Length = 934 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 10/220 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 T + + + +L + KE++ E++ Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMNGKEDIAEYE 215 >gi|229013001|ref|ZP_04170166.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048] gi|228748255|gb|EEL98115.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048] Length = 1435 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 11/211 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 478 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGIEKTKNPVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 536 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 593 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + + R L T + Sbjct: 594 LNDSMGQGDAYKRG-----RPSHLTLLATSD 619 >gi|229006094|ref|ZP_04163782.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4] gi|228755170|gb|EEM04527.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4] Length = 1433 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F + + +AHNA FD+GF+N ++ D I Sbjct: 476 MLTDAPEVGEVFKKFESWMGD--HTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHNQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|310828723|ref|YP_003961080.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612] gi|308740457|gb|ADO38117.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612] Length = 461 Score = 78.8 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 4/182 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++ D+ETTGLD N+ IIEIGA+++ D + +F+ F+ P + + GIT+ Sbjct: 145 NYVMVDVETTGLDPSNNEIIEIGALKITDGNVI-DSFKTFVKP-INSIPSKITSITGITN 202 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D PS ++ EF F ++ + N D L I Sbjct: 203 NMVADAPSIKTVLMEFKSFLSDNYIVGYNVLFDIKFLHDSYYKNFGNCDWLSHDYIDVLR 262 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + + L ++ I + H AL D + + Y + N F+ Sbjct: 263 FCRKYFKSAPNHKLTTMIDYLNID--VKEHHRALADCYATLECYNNCKERALKENIRFEL 320 Query: 188 NE 189 N Sbjct: 321 NS 322 >gi|301053179|ref|YP_003791390.1| ATP-dependent DNA helicase [Bacillus anthracis CI] gi|300375348|gb|ADK04252.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str. CI] Length = 934 Score = 78.8 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|229086370|ref|ZP_04218547.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44] gi|228696982|gb|EEL49790.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44] Length = 1433 Score = 78.8 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F + + +AHNA FD+GF+N ++ D I Sbjct: 476 MLTDAPEVGEVFKKFEAWMGD--HTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|75760862|ref|ZP_00740876.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491646|gb|EAO54848.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 1435 Score = 78.8 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 11/211 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + I Sbjct: 478 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 536 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 593 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + + R L T + Sbjct: 594 LNDSMGQGDAYKRG-----RPSHLTLLATSD 619 >gi|222097262|ref|YP_002531319.1| DNA polymerase iii polc [Bacillus cereus Q1] gi|221241320|gb|ACM14030.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1] Length = 1433 Score = 78.8 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 11/211 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + + R + T + Sbjct: 592 LNDSMGQGDAYKRG-----RPSHMILLATSD 617 >gi|42780745|ref|NP_977992.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus ATCC 10987] gi|42736665|gb|AAS40600.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus cereus ATCC 10987] Length = 934 Score = 78.8 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|311033291|ref|ZP_07711381.1| Exonuclease [Bacillus sp. m3-13] Length = 216 Score = 78.8 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 86/189 (45%), Gaps = 5/189 (2%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTG + +++DR+IE+GAV++ + + + +Q ++ PN R+ E ++L IT E Sbjct: 31 VFDTETTGFNVARDDRLIELGAVKIKNLQVIDNSAYQTYINPN-RQIPREIIELTSITQE 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P ++ + N+ + ++ H FD+ I AEL+R N +P + Sbjct: 90 QTDEAPQALEAITKLTNMANQTSVCYVGHYLAFDMQAIQAELKRNNLKWKNPKSLDTLDL 149 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I DL + +G I +H AL D+ + ++ +++ + Sbjct: 150 IGYIAPSYDMRDLEKYARDFGTRIY--QRHSALGDALTTAYLFTELLQLSQDRGLKTWGD 207 Query: 189 EDRFFKEEK 197 + + Sbjct: 208 LLKIKGSQN 216 >gi|52143806|ref|YP_083022.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus E33L] gi|51977275|gb|AAU18825.1| ATP-dependent DNA helicase [Bacillus cereus E33L] Length = 934 Score = 78.8 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|47566006|ref|ZP_00237044.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus cereus G9241] gi|47556923|gb|EAL15253.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus cereus G9241] Length = 934 Score = 78.8 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELGQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|65318908|ref|ZP_00391867.1| COG1199: Rad3-related DNA helicases [Bacillus anthracis str. A2012] Length = 934 Score = 78.8 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ E ++ + ++ Sbjct: 62 DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEEXRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|260890306|ref|ZP_05901569.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254] gi|260859926|gb|EEX74426.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254] Length = 1151 Score = 78.8 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 12/215 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI +VFDIETTG D ND+IIEIGAV++ F F+ P P+ Sbjct: 111 MIEDEI--YVVFDIETTGFDPFNDKIIEIGAVKMRGREIIGE-FSEFVNPE-IPIPPKIT 166 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L ITDE + + ++ F +F + AHNAKFDVGFI + + Sbjct: 167 ELTTITDEMVANAEKIETVLPRFLEFCTDTTVV--AHNAKFDVGFIKQKTIEQGLEYSPS 224 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVG 177 L+ S L +L K +GIT + H A+ D+ ++V ++ M++ Sbjct: 225 VIDTLPLARTLLPD-SRGYGLANLVKYFGIT--LETHHRAVDDAKATAEVFQKFLNMILS 281 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 + + + + +T+ + L+K L Sbjct: 282 KGILKLIEINTDLQPNIQNSETLNTMILVKNQAGL 316 >gi|187778984|ref|ZP_02995457.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC 15579] gi|187772609|gb|EDU36411.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC 15579] Length = 1442 Score = 78.8 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 6/192 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG SKND+IIEIGAV++ +R F F+ P R + +L ITD+ Sbjct: 428 FVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPEKITELTSITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127 + DK + I F +F + + +AHNA FDV FIN + + + + T Sbjct: 486 MVDDKEAIDKILPRFIEFIGD--SVVVAHNAAFDVSFINKNCKDLKIEFKNSVMDTVTLS 543 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + ++ + + HR+ A + +L + +M+ I Sbjct: 544 RFLFPELKRYKLNVIAKHLGISLENHHRAVDDAKATADILLKSF-EMLKEKEIITLHNLN 602 Query: 188 NEDRFFKEEKKT 199 E KK Sbjct: 603 KEFLGNINIKKE 614 >gi|323705405|ref|ZP_08116980.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323535307|gb|EGB25083.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 1410 Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 7/188 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL S ND IIEIGAV++ ++ TF+ F+ P S KL GITD+ Sbjct: 399 FVVFDIETTGLSSINDNIIEIGAVKIKNFQIV-DTFETFVNPQVH-ISKFITKLTGITDD 456 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ PS I +F DF + + +AHNA FDV FI + + + + +P Sbjct: 457 MVKEYPSIEEILPKFLDFIKD--SILVAHNANFDVTFIKTKARNLGMEVDNPVLDTL-EL 513 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+++ + G++ + H A+ D+ ++++IK + + Sbjct: 514 SRHMYENLKNYKLDTVAQHLGVS--LENHHRAVDDAKATAEIFIKSINKLKENGIEKVNE 571 Query: 189 EDRFFKEE 196 + + K + Sbjct: 572 INDYLKNK 579 >gi|228932930|ref|ZP_04095795.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826733|gb|EEM72502.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 934 Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFQDVAPMVGELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|317129167|ref|YP_004095449.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM 2522] gi|315474115|gb|ADU30718.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM 2522] Length = 1434 Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 8/196 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTGL + + IIE+ AV++ + +R F+ F P+ + + L GITD+ Sbjct: 420 YIVFDVETTGLSAVYNTIIELAAVKVKNGEIVDR-FESFANPHEKLTP-LIIDLTGITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P + +F ++ + A +AHNA FD+GFINA Q+I I Sbjct: 478 MVENAPEVDDVLKDFHEWIGD--ATLVAHNASFDMGFINAGFQKIGYGHATNPVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF--GFK 186 LN+LCK++ I + H A+ D+ + KM+ + F+ Sbjct: 536 GRLLYPTFKNYRLNTLCKKFNIE--LVAHHRAIYDAEATGHLLWKMVKDATSQGIMKHFQ 593 Query: 187 TNEDRFFKEEKKTVPN 202 NE + KK PN Sbjct: 594 LNEQTSKDDYKKQRPN 609 >gi|229090605|ref|ZP_04221839.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-42] gi|228692748|gb|EEL46473.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-42] Length = 934 Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|167624226|ref|YP_001674520.1| DNA polymerase III subunit epsilon [Shewanella halifaxensis HAW-EB4] gi|167354248|gb|ABZ76861.1| DNA polymerase III, epsilon subunit [Shewanella halifaxensis HAW-EB4] Length = 213 Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 93/204 (45%), Gaps = 12/204 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL + DR IEIGAV L D +R FQ + P G + S GI++E Sbjct: 17 IVLDFETTGLSPNQGDRAIEIGAVMLKDGKVIDR-FQQLMNP-GFRVSGFIENYTGISNE 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L D S ++ ++F DF + N +AHNA FD F++AEL R+N + + + Sbjct: 75 MLSDAKSCETVMTQFADFIGDYN--LVAHNASFDQRFLDAELSRVNCNYPGQFACSMLIA 132 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS---QINFG 184 + P+ + K H AL DS + +D+++ M+ + QI Sbjct: 133 RRLYQDAPNHKLGSLIHYKNI---QHDGVFHRALADSEMTADLWLVMLEDLNADYQIKRA 189 Query: 185 FKTNEDRFFKEEKKTVPNISLLKR 208 + K+ K +V +R Sbjct: 190 DFSLLQAIAKQSKASVSQYLARQR 213 >gi|229155207|ref|ZP_04283319.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC 4342] gi|228628334|gb|EEK85049.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC 4342] Length = 934 Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L KR+ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKRHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|168180697|ref|ZP_02615361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum NCTC 2916] gi|182668382|gb|EDT80361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum NCTC 2916] Length = 1432 Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 83/192 (43%), Gaps = 6/192 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG SKND+IIEIGAV++ +R F F+ P R + +L ITD Sbjct: 418 FVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPK-RTIPDKITELTSITDN 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127 + DK + I F DF + + +AHNA FDV FIN + + + + T Sbjct: 476 MVDDKETIDKILPRFIDFIGD--SVVVAHNASFDVSFINKNCKDLKIEFENSVMDTVTLS 533 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + ++ + + HR+ A + +L + +M+ I Sbjct: 534 RFLFPELKRHKLNVIAKHLGISLENHHRAVDDAKATADILLKSF-EMLREKEIITLHSLN 592 Query: 188 NEDRFFKEEKKT 199 E KK Sbjct: 593 KEFLGNINIKKE 604 >gi|228998594|ref|ZP_04158181.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17] gi|228761062|gb|EEM10021.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17] Length = 1433 Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F + + +AHNA FD+GF+N ++ D I Sbjct: 476 MLTDAPEVGEVFKKFESWMGD--HTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|300117431|ref|ZP_07055221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus SJ1] gi|298725266|gb|EFI65918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus SJ1] Length = 934 Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|228992546|ref|ZP_04152473.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442] gi|228767180|gb|EEM15816.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442] Length = 1433 Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F + + +AHNA FD+GF+N ++ D I Sbjct: 476 MLTDAPEVGEVFKKFESWMGD--HTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|229168557|ref|ZP_04296280.1| DNA polymerase III polC-type [Bacillus cereus AH621] gi|228614963|gb|EEK72065.1| DNA polymerase III polC-type [Bacillus cereus AH621] Length = 1433 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGIEKTKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|254519189|ref|ZP_05131245.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA] gi|226912938|gb|EEH98139.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA] Length = 1442 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 10/211 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTG +KND+IIEIGAV++ TF F+ P R + +L GITDE Sbjct: 429 FIVFDIETTGFSAKNDKIIEIGAVKIKGREVI-DTFSEFVYPKCR-IPYKITELTGITDE 486 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D + +F +F + +AHNA FD GFI + N L+ + I Sbjct: 487 IVQDADPIEVVLPKFIEFIDG--CAVVAHNAAFDTGFIK---KNCNDLGLEFNSTIVDTV 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R + + +S + H A+ D+ ++++ ++ ++ N Sbjct: 542 PLARFLYPELKRVKLNLVAKHLGVSLENHHRAVDDAKATAEIF---LISIKKMIEELNMN 598 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 +E +I K + T+ Sbjct: 599 SLNDLNKEFLEKMDIKKEKTYHIIIFAKTQA 629 >gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1] gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum Rt17-B1] Length = 1390 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 110/239 (46%), Gaps = 28/239 (11%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGL+ ++D I+EIGAV+ D + F F+ PN K + ++L + GIT++ Sbjct: 383 YVVLDLETTGLNPRSDEIMEIGAVKTRDGKVIDE-FHTFVRPN--KLNKKSLNITGITED 439 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD P + + +F + + +AHNA FD+ F+ L + + P LS Sbjct: 440 MLKDAPDIMQVLPKLLEFIKD--SILVAHNADFDMTFLKNILSKSGIEFNPPYIDTLRLS 497 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 A ++ L+ L +G+ H AL D+ + +V+ K++ + + Sbjct: 498 QALLRNKIKSFSLDKLVDHFGLG--AFQHHRALDDARVTVNVFWKLIELAKKKSITTFEK 555 Query: 189 EDRFFKEEK---KTVPNISLLKRDKP------------------LFTRITKEELDEHDK 226 ++ + K ++++L R+K + ++ K EL++H + Sbjct: 556 LNKLVENINPLVKHPQHVTVLVRNKTGLKNLYKLISKAHTETFFVVPQVLKSELEKHRE 614 >gi|315640656|ref|ZP_07895761.1| DNA polymerase III [Enterococcus italicus DSM 15952] gi|315483595|gb|EFU74086.1| DNA polymerase III [Enterococcus italicus DSM 15952] Length = 911 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 83/222 (37%), Gaps = 10/222 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + K DRI + G V + + R F + P GR SP+ L T++ Sbjct: 4 YAIVDIETTGTNPKEDRIFQFGCVFVENGEIVGR-FATMIHP-GRSISPQIQHLTHTTNK 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+NAEL+R + L I Sbjct: 62 DVRHSPYFEDVAPTIYELLSG--TVFVAHNIHFDYRFLNAELERCGCERLQLKGIDTVEL 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF----G 184 L+ L + G+ H A D+ + + ++I + + + Sbjct: 120 AQILFPTEISFRLSDLSESLGLAH--ERPHQADSDAEVTAQLFIALEQRLASLPLCTIKE 177 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK 226 + + + + F + + E K Sbjct: 178 LSRLSKTLTMQTGEFIAKYVQYSKLPNQFPELIEIEKIALQK 219 >gi|229061421|ref|ZP_04198766.1| DNA polymerase III polC-type [Bacillus cereus AH603] gi|228717844|gb|EEL69492.1| DNA polymerase III polC-type [Bacillus cereus AH603] Length = 1433 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN +++ + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKVGIEKTKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|152975065|ref|YP_001374582.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023817|gb|ABS21587.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus cytotoxicus NVH 391-98] Length = 929 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 83/222 (37%), Gaps = 10/222 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEGGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + + AHN FD F+ EL++ + +I Sbjct: 62 DENLVKQAPLFQDVAPMIVELLQGASFV--AHNVHFDWNFLKEELKQAGYADIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLTQIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 T + + + +L + KEE +E+D Sbjct: 176 VTLQSLYELSDVFQSDMSHILSENILKKMTAGKEESEEYDIY 217 >gi|228945241|ref|ZP_04107597.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814476|gb|EEM60741.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 934 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|86137282|ref|ZP_01055859.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. MED193] gi|85825617|gb|EAQ45815.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. MED193] Length = 484 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 VFD ETTGL D I++IGAV +L+ + P GR + ++HG++ Sbjct: 277 FAVFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDP-GRPIPEASTRVHGVST 335 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P + +EF +A +AHNA FD+ F+ + P L Sbjct: 336 AMVQGAPDIAEAAAEF--HLFATDAVIVAHNAPFDMAFLRRHAKASGLAWDHPILDTVLL 393 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 S A S + L++LC+R ITI +H AL D+ + ++M+ F Sbjct: 394 S-AVLFGASVPHTLDALCERLDITIPPALRHTALGDAQATACALVQMIPMLQARGFN 449 >gi|229174271|ref|ZP_04301804.1| DNA polymerase III alpha subunit [Bacillus cereus MM3] gi|228609128|gb|EEK66417.1| DNA polymerase III alpha subunit [Bacillus cereus MM3] Length = 318 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + IAHNA FD+ F+ + + + I Sbjct: 71 RVSDAPTIEEVLPLFLAFLHT--NVIIAHNASFDMRFLKSNVSMLGLPEPQNKVIDTVFL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169 >gi|218282259|ref|ZP_03488558.1| hypothetical protein EUBIFOR_01140 [Eubacterium biforme DSM 3989] gi|218216727|gb|EEC90265.1| hypothetical protein EUBIFOR_01140 [Eubacterium biforme DSM 3989] Length = 525 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 8/181 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I R + FD+ETTGLDSK DRIIE+GA+ + T T+ + P + S EA Sbjct: 45 IEDYMKRYVAFDVETTGLDSKKDRIIEVGAILFENG-HTVETYSSLVNPEVK-ISKEATT 102 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPL 118 ++ IT+ +K P+ + E F + AHNA FD+ F++ + + Sbjct: 103 INHITNGMVKKAPTEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLS--QALMRQGYD 160 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +DTLS++R+ P N + ++ I ++ +H A+ D+ + ++ K++ Sbjct: 161 AQILCLDTLSLSRKIIPGLSNYKQTTVAKH-FNIKNKQEHRAISDAEVCGEILWKLLSIK 219 Query: 179 S 179 Sbjct: 220 K 220 >gi|160902928|ref|YP_001568509.1| DNA polymerase III PolC [Petrotoga mobilis SJ95] gi|160360572|gb|ABX32186.1| DNA polymerase III, alpha subunit [Petrotoga mobilis SJ95] Length = 1388 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 10/222 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL+ + IIEIGAV++ + ++ F + P + S GIT++ Sbjct: 382 FVVFDLETTGLEPAMNEIIEIGAVKIKNMKIVSK-FHRLVKP-RKPVSNFTSNFTGITNQ 439 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ + + +F F A +AHNA FD FI ++R+ + + + I Sbjct: 440 MLEVEKPIEEVLPQFLSFIEG--AVLVAHNAIFDYRFIREWVRRVYNEHFEQTYIDTVAL 497 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + + + + H A D+++ + V++K++ N ++ Sbjct: 498 SKSLLTLKSYGLAKVVEE---LKLGSFEHHRAHEDANITALVFLKLIEMAKSQNVEMLSD 554 Query: 189 ED---RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 + +F ++ + ++L ++K + K + H K Sbjct: 555 LEKLKKFIDFKRIQPNDTTILVKNKTGLKNLYKLVSNAHVKY 596 >gi|228926672|ref|ZP_04089741.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228833048|gb|EEM78616.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 934 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|196039095|ref|ZP_03106402.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus NVH0597-99] gi|196030240|gb|EDX68840.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus NVH0597-99] Length = 934 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|118477094|ref|YP_894245.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al Hakam] gi|196046614|ref|ZP_03113838.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus 03BB108] gi|225863505|ref|YP_002748883.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus 03BB102] gi|229183836|ref|ZP_04311053.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC 6E1] gi|118416319|gb|ABK84738.1| ATP-dependent DNA helicase [Bacillus thuringiensis str. Al Hakam] gi|196022547|gb|EDX61230.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus 03BB108] gi|225789838|gb|ACO30055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus 03BB102] gi|228599685|gb|EEK57288.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC 6E1] Length = 934 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|47567894|ref|ZP_00238601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] gi|47555372|gb|EAL13716.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] Length = 303 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 78/206 (37%), Gaps = 7/206 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 12 NYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITN 69 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P+ + F F ++ +AHNA FD+ F+ + + + I Sbjct: 70 YRVSDAPTIEEVLPLFLAFLHK--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVF 127 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + + L +L + G S H A D + VY K + T Sbjct: 128 LAKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNT 184 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF 213 + + KRD Sbjct: 185 EVLDETAVYEAVKEILVRNKRDIEWI 210 >gi|183602347|ref|ZP_02963713.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019] gi|241191299|ref|YP_002968693.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196705|ref|YP_002970260.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218266|gb|EDT88911.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019] gi|240249691|gb|ACS46631.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251259|gb|ACS48198.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794292|gb|ADG33827.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp. lactis V9] Length = 188 Score = 78.4 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 7/169 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + M I D+ETTG ++NDRI EIGAV++ D +R F + P GR+ S +L Sbjct: 6 RIPMNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDR-FTQLVNP-GRRVSARITELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-INAELQRINKDPLDPSR 122 GI++E L+D+P I +F +N + HN KFD+ F I + + R Sbjct: 64 GISNEMLEDQPVIEDILGDFIH--WTENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVR 121 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 IDT+ I R PS R+ L L +RYGI +H AL D+ Sbjct: 122 PIDTMHIDRLLFPSERHRLVDLIQRYGIG--DVEEHRALSDATQTYQCL 168 >gi|206974778|ref|ZP_03235693.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus H3081.97] gi|217959123|ref|YP_002337671.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus AH187] gi|222095271|ref|YP_002529331.1| bifunctional ATP-dependent DNA helicase/DNA polymerase iii subunit epsilon [Bacillus cereus Q1] gi|206746797|gb|EDZ58189.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus H3081.97] gi|217066733|gb|ACJ80983.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH187] gi|221239329|gb|ACM12039.1| ATP-dependent DNA helicase [Bacillus cereus Q1] Length = 934 Score = 78.4 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|30261638|ref|NP_844015.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Ames] gi|47526838|ref|YP_018187.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. 'Ames Ancestor'] gi|49184469|ref|YP_027721.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Sterne] gi|165869397|ref|ZP_02214056.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0488] gi|167639095|ref|ZP_02397368.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0193] gi|170706543|ref|ZP_02897003.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0389] gi|177650486|ref|ZP_02933453.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0174] gi|190568647|ref|ZP_03021552.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis Tsiankovskii-I] gi|227815611|ref|YP_002815620.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. CDC 684] gi|229602233|ref|YP_002866045.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0248] gi|254734478|ref|ZP_05192190.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Western North America USA6153] gi|254755128|ref|ZP_05207162.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Vollum] gi|254759665|ref|ZP_05211689.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Australia 94] gi|30255866|gb|AAP25501.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. Ames] gi|47501986|gb|AAT30662.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. 'Ames Ancestor'] gi|49178396|gb|AAT53772.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus anthracis str. Sterne] gi|164714837|gb|EDR20355.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0488] gi|167512885|gb|EDR88258.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0193] gi|170128641|gb|EDS97508.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0389] gi|172083630|gb|EDT68690.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0174] gi|190560247|gb|EDV14227.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis Tsiankovskii-I] gi|227006832|gb|ACP16575.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. CDC 684] gi|229266641|gb|ACQ48278.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0248] Length = 934 Score = 78.4 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|71893884|ref|YP_279330.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae J] gi|71852011|gb|AAZ44619.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J] Length = 1468 Score = 78.4 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 3/202 (1%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K++ ++FD+ETTGL + + I+E GAV L + + + Q F+ P G+ Sbjct: 407 KLKFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKH-QFFIKPTGKIPPAITKITGIS 465 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + S+ + + + +AHNA FD F+ ++ K L I Sbjct: 466 QKMIDETAISWEIALEKITKIIKD--SVLVAHNAAFDFSFLEQFFRQKAKKSLKNPIIDT 523 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L ++ KRY I H A D+ +L+ ++ + N Sbjct: 524 LEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIWKNFLAELKSQNIND 583 Query: 186 KTNEDRFFKEEKKTVPNISLLK 207 T+ + P K Sbjct: 584 LTSLSEIKNSIFELRPEKVFPK 605 >gi|229195843|ref|ZP_04322602.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus m1293] gi|228587616|gb|EEK45675.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus m1293] Length = 934 Score = 78.4 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|319779076|ref|YP_004129989.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9] gi|317109100|gb|ADU91846.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9] Length = 186 Score = 78.4 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 60/189 (31%), Positives = 101/189 (53%), Gaps = 15/189 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR + D ETTG RIIE+G VE++ K+ R ++ P+ R++ A ++H I Sbjct: 1 MRYVCLDTETTGSKYYLGHRIIELGCVEVICGQKSGRELHMYFNPD-RRSDFGAFRVHKI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +DEFL DKP F+ E DF + + HNA FD+GF+N E + + L+ + Sbjct: 60 SDEFLLDKPRFADCVDEIIDFLYG--STLVIHNAPFDMGFLNYEFKISGQPKLNEFVVDV 117 Query: 126 T-------LSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLDSHLLSDVYIKM 174 + + ++ HP+ R L++L K + HR+ HGAL+D+ +L+D++I++ Sbjct: 118 IDTVILGRMKLPKKLHPNQRYSLDALYKTLVRSDYNPALHRNPHGALIDARMLADLFIRL 177 Query: 175 MVGGSQINF 183 +G +I Sbjct: 178 NMGQEEIPI 186 >gi|323484216|ref|ZP_08089585.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum WAL-14163] gi|323692098|ref|ZP_08106345.1| DNA polymerase III [Clostridium symbiosum WAL-14673] gi|323402458|gb|EGA94787.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum WAL-14163] gi|323503898|gb|EGB19713.1| DNA polymerase III [Clostridium symbiosum WAL-14673] Length = 1511 Score = 78.4 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 10/211 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG +RIIEIGAV + + ++ F F+ P+ E KL GI D Sbjct: 487 VVFDIETTGFSPLKNRIIEIGAVRVEEGRIVDK-FSSFVNPD-VPIPFEIEKLTGINDNM 544 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P + EF +F A +AHNA FD+ FI ++ + +L+ Sbjct: 545 VLDAPKIDRVLPEFLEFCRG--AVMVAHNAGFDISFIKENARQQGLEFNPTVLDTVSLAR 602 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGGSQINFGFK 186 + + + + I+ + H A+ D+ +++ +IKM+ + Sbjct: 603 VLLPNLNRFKLDTVAKE---LKINLANHHRAVDDAGATAEIFVRFIKMLKERDIFDLSQL 659 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 R E + +P ++ K R+ Sbjct: 660 NELSRMTVEMIRKMPTYHIIIIAKNDVGRVN 690 >gi|323340059|ref|ZP_08080325.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644] gi|323092565|gb|EFZ35171.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644] Length = 1448 Score = 78.4 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL ++ +++IE+ AV++ D K F+ F+ P + ++ Sbjct: 428 YVVFDTETTGLSAQYNKVIELAAVKMKDGEKIGE-FEEFIDPG---HPLSQTTINLTHIT 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S + + + HNA FDV F+N R + + Sbjct: 484 DAMVRGSKTEEEVFKLFREFCKGCIIVGHNATFDVDFMNTGYLRHGMPEIKEPWVDTLPL 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R L++L KR + + H H A+ D+ ++ KM+ + + Sbjct: 544 ARILYSDMKRFTLDTLAKRLKVDLEH--HHRAIYDAEATGYIFYKMLADAREQFDILYHD 601 Query: 189 EDRFFKEEKKTVPNISLL 206 + + T Sbjct: 602 DFNKHMVQPDTYKQQHPF 619 >gi|302670324|ref|YP_003830284.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316] gi|302394797|gb|ADL33702.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316] Length = 1529 Score = 78.4 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 4/175 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG +RIIEIGAV++ + R F F+ P KL ITDE Sbjct: 498 FVVFDIETTGFSPIKNRIIEIGAVKIRNGEILER-FSEFINPQ-VPIPYRIEKLTSITDE 555 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ I +F +F + A + HN FD+ FIN Q + D + L+ Sbjct: 556 MVMDAPTREVIIPKFVEFCKD--AVLVGHNVAFDISFINQNCQDLGIDVDYTTVDTLWLA 613 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + H + L+ + +I M+ N Sbjct: 614 RYFFPLQAKHTLDAVAKTLNVVLDHHHRAVDDAECTALIFNKFIPMLKEQKAENL 668 >gi|163941555|ref|YP_001646439.1| DNA polymerase III PolC [Bacillus weihenstephanensis KBAB4] gi|163863752|gb|ABY44811.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis KBAB4] Length = 1433 Score = 78.4 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGIEKTKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|291536049|emb|CBL09161.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis M50/1] Length = 911 Score = 78.1 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 7/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG ++IIEIGAV+++ T R F F+ P +L I D+ Sbjct: 481 YVVFDLETTGFSPDKNKIIEIGAVKVVHGEITER-FSTFVNPE-VPIPYRIEELTSIRDD 538 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P +I +F +F + A +AHNA FD+ FI +R + L+ Sbjct: 539 MVIDAPKIETILPQFMEFCGD--AIMVAHNADFDMSFIIKNCERQGIEKEFTIIDTVALA 596 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R L+++ K G++ + H A+ D+ +++++K + Sbjct: 597 RILLPQ-LNRFKLDTVAKALGVS--LENHHRAVDDAGCTAEIFVKFVKMLHDRGMETLDQ 653 Query: 189 EDRFFKEEKKTVPNIS 204 ++ + +T+ ++ Sbjct: 654 VNQMGQASPETIMKMN 669 >gi|228940906|ref|ZP_04103465.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973835|ref|ZP_04134411.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980424|ref|ZP_04140734.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407] gi|228779244|gb|EEM27501.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407] gi|228785860|gb|EEM33863.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818742|gb|EEM64808.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941584|gb|AEA17480.1| DNA polymerase III PolC [Bacillus thuringiensis serovar chinensis CT-43] Length = 1433 Score = 78.1 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|229117304|ref|ZP_04246682.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3] gi|228666204|gb|EEL21668.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3] Length = 1435 Score = 78.1 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 478 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLAKTNNPVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 536 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHNQ 593 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 594 LNDSMGQGDAYKRGRP 609 >gi|229031448|ref|ZP_04187448.1| DNA polymerase III polC-type [Bacillus cereus AH1271] gi|228729737|gb|EEL80717.1| DNA polymerase III polC-type [Bacillus cereus AH1271] Length = 1433 Score = 78.1 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|229134625|ref|ZP_04263435.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196] gi|228648886|gb|EEL04911.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196] Length = 1433 Score = 78.1 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGIEKTKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|324325658|gb|ADY20918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar finitimus YBT-020] Length = 934 Score = 78.1 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|309807200|ref|ZP_07701174.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 03V1-b] gi|308166421|gb|EFO68626.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 03V1-b] Length = 1424 Score = 78.1 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ + ++ + Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 462 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + Q+ HN +FD+GF+NA L+R N D + + Sbjct: 463 DEMVQNADDENIVIRQFQDFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 522 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ + F+ Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 577 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K K + I K Sbjct: 578 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 607 >gi|319645959|ref|ZP_08000189.1| PolC protein [Bacillus sp. BT1B_CT2] gi|317391709|gb|EFV72506.1| PolC protein [Bacillus sp. BT1B_CT2] Length = 1463 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 5/197 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ R F+ F P+ R S ++L GITD+ Sbjct: 422 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIER-FERFANPH-RPLSATIIELTGITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD P + +F ++ + +AHNA FD+GFIN +R+ + +IDTL Sbjct: 480 MLKDAPEVEEVIRDFKEWVGD--HTLVAHNASFDIGFINVAYKRLLNSEKVQNPVIDTLE 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + R +P +N + I H A+ D+ + +KM+ ++ N + Sbjct: 538 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDTEATGYLLVKMLKDAAEKNILYHDQ 596 Query: 189 EDRFFKEEKKTVPNISL 205 + + + Sbjct: 597 LNENMGQSNAYQRSRPY 613 >gi|326791606|ref|YP_004309427.1| DNA polymerase III subunit alpha [Clostridium lentocellum DSM 5427] gi|326542370|gb|ADZ84229.1| DNA polymerase III, alpha subunit [Clostridium lentocellum DSM 5427] Length = 1468 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 51/212 (24%), Positives = 82/212 (38%), Gaps = 10/212 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG K +RIIEIGAV+++ TF F+ P + KL GI D Sbjct: 442 YVVFDLETTGFSPKMNRIIEIGAVKVVGGQIV-DTFSEFVNPK-VPIPYQIEKLTGINDR 499 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + + +F F +AHNA FD+ FI A + L+ Sbjct: 500 MVMEAETIEVLLPQFLAFCEG--CVMVAHNADFDMSFIEANAKEQGLAADFTVMDTVALA 557 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGGSQINFGF 185 H + N + IS + H A+ D+ ++ +I+M+ Sbjct: 558 RILMPHLGNFKLNNVA---KHLDISLENHHRAVDDATATGEIFVRFIEMLQEKGVTTLDA 614 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + + K +P + K RI Sbjct: 615 INDMVEISPDYIKKLPTYHGVILVKNEIGRIN 646 >gi|228986699|ref|ZP_04146829.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773030|gb|EEM21466.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 315 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + L +L + G S H A D + VY K + T Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + + KRD Sbjct: 183 VLDETAVYEAVKKILVRNKRDIEWV 207 >gi|188997343|ref|YP_001931594.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188932410|gb|ACD67040.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 205 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 5/196 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL+ K IIEI A+++ T + F + P+ KL GIT+ + Sbjct: 13 VVDLETTGLNPKTSEIIEIAAIKVEGSVITEK-FHTLVKPSIGFIPEHITKLTGITNPLV 71 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP +F F + +N+ IAHNAKFD+ F+N ++ + I + Sbjct: 72 IDKPKIEQVFPHFLE--FTKNSIIIAHNAKFDISFLNEASLQLTGKLIQNPVICTLVLAN 129 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R L +L + I + H AL D+ + +++ K + + Sbjct: 130 RLFPDLKSKSLTNLAYHFNIPYHRK--HRALADAEVTYELFKKFVDYLQNYKVDKVIDLI 187 Query: 191 RFFKEEKKTVPNISLL 206 R + +P+ Sbjct: 188 RLSNGKDLKLPSKRRR 203 >gi|329919876|ref|ZP_08276814.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 1401G] gi|328936966|gb|EGG33396.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 1401G] Length = 1424 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ + ++ + Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 462 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + Q+ HN +FD+GF+NA L+R N D + + Sbjct: 463 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 522 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ + F+ Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 577 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K K + I K Sbjct: 578 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 607 >gi|312873343|ref|ZP_07733396.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2052A-d] gi|311091133|gb|EFQ49524.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2052A-d] Length = 1420 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ + ++ + Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 458 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + Q+ HN +FD+GF+NA L+R N D + + Sbjct: 459 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 518 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ + F+ Sbjct: 519 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 573 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K K + I K Sbjct: 574 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 603 >gi|259501583|ref|ZP_05744485.1| DNA polymerase III [Lactobacillus iners DSM 13335] gi|302191443|ref|ZP_07267697.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus iners AB-1] gi|259167101|gb|EEW51596.1| DNA polymerase III [Lactobacillus iners DSM 13335] Length = 1420 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ + ++ + Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 458 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + Q+ HN +FD+GF+NA L+R N D + + Sbjct: 459 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 518 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ + F+ Sbjct: 519 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 573 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K K + I K Sbjct: 574 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 603 >gi|325911796|ref|ZP_08174200.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 143-D] gi|325476302|gb|EGC79464.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 143-D] Length = 1416 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ + ++ + Sbjct: 399 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 454 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + Q+ HN +FD+GF+NA L+R N D + + Sbjct: 455 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 514 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ + F+ Sbjct: 515 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 569 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K K + I K Sbjct: 570 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 599 >gi|295399848|ref|ZP_06809829.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] gi|312111640|ref|YP_003989956.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1] gi|294978251|gb|EFG53848.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] gi|311216741|gb|ADP75345.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1] Length = 1436 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + IIE+ AV++ D +R F F P+ S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FTSFANPH-HPLSMTTIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD P + +F+D+ + + +AHNA FD+GF+N +I + I Sbjct: 479 MLKDAPDVEEVLRQFYDWIGD--SVLVAHNASFDIGFLNVGFAKIGLGKVTNPVIDTLEL 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK++ I H A+ D+ + ++M+ + + Sbjct: 537 ARFLYPDLKNHRLNTLCKKF--DIELTQHHRAIYDAEATGYLLMRMLKDAQERGI-LYHD 593 Query: 189 EDRFFKEEKKTVPNISLL 206 E +E+ + Sbjct: 594 ELNKRSKEEVSYQRSRPF 611 >gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 1410 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 7/188 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL S ND IIEIGAV++ D TF+ F+ P S KL GITD+ Sbjct: 399 FVVFDIETTGLSSINDSIIEIGAVKIKDCQIV-DTFETFVNPQIH-ISNFITKLTGITDD 456 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K P + +F +F N + +D + Sbjct: 457 MVKRYPPIDEVLPKFLEFIKGSTLVAHNANFDVT---FIKTKAKNLGIEVDNPVLDTLEL 513 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+++ + G++ + H A+ D+ +++++K + + Sbjct: 514 SRHMYENLKNYKLDTVAQHLGVS--LENHHRAVDDARATAEIFLKSINKLKENGIEKVNE 571 Query: 189 EDRFFKEE 196 + + K + Sbjct: 572 INSYLKNK 579 >gi|309809542|ref|ZP_07703400.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 2503V10-D] gi|308170214|gb|EFO72249.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 2503V10-D] Length = 1424 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ + ++ + Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 462 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + Q+ HN +FD+GF+NA L+R N D + + Sbjct: 463 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 522 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ + F+ Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 577 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K K + I K Sbjct: 578 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 607 >gi|228922572|ref|ZP_04085872.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837001|gb|EEM82342.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 1433 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|89098599|ref|ZP_01171481.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911] gi|89086561|gb|EAR65680.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911] Length = 1440 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 6/189 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTGL + D IIE+ AV++ D +R F+ F P+ S + L GITD+ Sbjct: 425 YIVFDVETTGLSAVYDTIIELAAVKIHDGEIIDR-FESFANPH-HPLSATTIDLTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P + F + QN +AHNA FD+GF+N +R I Sbjct: 483 DVRNAPEVEEVLRRFKE--WSQNDILVAHNASFDMGFLNTGYKRYGLGKAANPVIDTLEL 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L K++ + H A+ D+ + IKM+ Q + Sbjct: 541 ARFLLPEMKNHRLNTLAKKF--DVELTQHHRAIYDAEATGYLLIKMLKEVMQKGIEYHNQ 598 Query: 189 EDRFFKEEK 197 + + Sbjct: 599 LNDNMGKGN 607 >gi|331090692|ref|ZP_08339541.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA] gi|330400106|gb|EGG79757.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA] Length = 1487 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 7/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG S D+IIEIGAV++ + +R + F+ P E KL ITD Sbjct: 452 FVVFDIETTGFSSVKDKIIEIGAVKVENGKIVSR-YSTFVNPE-VPIPFEITKLTSITDA 509 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P ++ EF ++ + A +AHNA FDVGFI +R+ + S L+ Sbjct: 510 MVIDAPKIETVLPEFMEYVGD--AVLVAHNAGFDVGFIEENCRRLGMERKLTSVDTVALA 567 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + IS + H A+ D+ +++++K + + Sbjct: 568 RVLLPTLSRYKLNIVAKT---LGISLENHHRAVDDAGATAEIFVKFVEMLKEREITTLKG 624 Query: 189 EDRFFKEEKKTVPNIS 204 + F + + Sbjct: 625 VNEFGAMNPDAIRKMP 640 >gi|289177416|gb|ADC84662.1| DNA polymerase III, epsilon chain [Bifidobacterium animalis subsp. lactis BB-12] Length = 190 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 7/169 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + M I D+ETTG ++NDRI EIGAV++ D +R F + P GR+ S +L Sbjct: 8 RIPMNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDR-FTQLVNP-GRRVSARITELT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-INAELQRINKDPLDPSR 122 GI++E L+D+P I +F +N + HN KFD+ F I + + R Sbjct: 66 GISNEMLEDQPVIEDILGDFIH--WTENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVR 123 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 IDT+ I R PS R+ L L +RYGI +H AL D+ Sbjct: 124 PIDTMHIDRLLFPSERHRLVDLIQRYGIG--DVEEHRALSDATQTYQCL 170 >gi|143342|gb|AAA22666.1| polymerase III [Bacillus subtilis] Length = 1437 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 5/197 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ R S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P + +F + +AHNA FD+GF+N +++ + + +IDTL Sbjct: 479 MLQDAPDVVDVIRDFRVRIGD--DILVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLE 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + R +P +N + I H A+ D+ + + +KM+ ++ + Sbjct: 537 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDTEATAYLLLKMLKDAAEKGIQYHDE 595 Query: 189 EDRFFKEEKKTVPNISL 205 + + + Sbjct: 596 LNENMGQSNAYQRSRPY 612 >gi|312871361|ref|ZP_07731457.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 3008A-a] gi|312872402|ref|ZP_07732471.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2062A-h1] gi|311091984|gb|EFQ50359.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2062A-h1] gi|311093113|gb|EFQ51461.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 3008A-a] Length = 1420 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ + ++ + Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 458 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + Q+ HN +FD+GF+NA L+R N D + + Sbjct: 459 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 518 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ + F+ Sbjct: 519 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 573 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K K + I K Sbjct: 574 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 603 >gi|312875787|ref|ZP_07735779.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2053A-b] gi|311088691|gb|EFQ47143.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2053A-b] Length = 1424 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ + ++ + Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 462 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + Q+ HN +FD+GF+NA L+R N D + + Sbjct: 463 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 522 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ + F+ Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 577 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K K + I K Sbjct: 578 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 607 >gi|54020575|ref|YP_116058.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae 232] gi|53987748|gb|AAV27949.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 232] Length = 1469 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 3/202 (1%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K++ ++FD+ETTGL + + I+E GAV L + + + Q F+ P G+ Sbjct: 408 KLKFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKH-QFFIKPTGKIPPAITKITGIS 466 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + S+ + + + +AHNA FD F+ ++ K L I Sbjct: 467 QKMIDETAISWEIALEKITKIIKD--SVLVAHNAAFDFSFLEQFFRQKAKKSLKNPIIDT 524 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L ++ KRY I H A D+ +L+ ++ + N Sbjct: 525 LEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIWKNFLAELKSQNIND 584 Query: 186 KTNEDRFFKEEKKTVPNISLLK 207 T+ + P K Sbjct: 585 LTSLSEIKNSIFELRPEKVFPK 606 >gi|89072880|ref|ZP_01159437.1| putative DNA polymerase III [Photobacterium sp. SKA34] gi|89051402|gb|EAR56857.1| putative DNA polymerase III [Photobacterium sp. SKA34] Length = 207 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 9/173 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L++ ++ FQ + P G + S GI++ Sbjct: 11 VVLDFETTGLSPNQGDRAIEIGAVKLVNGEIVDQ-FQQLMNP-GFRVSSFIEGYTGISNN 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L+ P + F DF + N +AHNA FD F++AEL I + + + Sbjct: 69 MLRTAPPCHEVMDAFADFIGDAN--LVAHNASFDQRFLDAELADIGRYYTGTFTCSMLIA 126 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + P+ + K + H AL DS + + +++ M+ + Sbjct: 127 RRLYQHAPNHKLGTLVDFKHI---KHNGVFHRALADSEMTARLWLVMLEDIKR 176 >gi|229160592|ref|ZP_04288587.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus R309803] gi|228623002|gb|EEK79833.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus R309803] Length = 933 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 86/220 (39%), Gaps = 10/220 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 T + + + +L + KEE E++ Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKVMHGKEEAVEYE 215 >gi|311068754|ref|YP_003973677.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942] gi|310869271|gb|ADP32746.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942] Length = 930 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 7/180 (3%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 NK R +V D+ETTG K D+II+I AV + + T R F ++ PN + +L Sbjct: 2 NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPFFIEQLT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT+ ++++ F ++ E + + AHN FD+GF+ EL D + Sbjct: 60 GITNSMVENEQPFEAVAEEVFQLLDGAYFV--AHNIHFDLGFVKYELNEAGFRLPDCEVL 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 L L + + + H A D+ + +++K++ ++ Sbjct: 118 DTVELSRIVYPGFEGYKLTELSEELQLKH--ENPHRADSDAEVTGFIFLKIIDKLQRLPL 175 >gi|229098287|ref|ZP_04229234.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29] gi|228685185|gb|EEL39116.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29] Length = 1433 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLAKTNNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|229104380|ref|ZP_04235049.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28] gi|228679078|gb|EEL33286.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28] Length = 1433 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLAKTNNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|325913471|ref|ZP_08175837.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 60-B] gi|325477240|gb|EGC80386.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 60-B] Length = 1424 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ + ++ + Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 462 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + Q+ HN +FD+GF+NA L+R N D + + Sbjct: 463 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 522 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ + F+ Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 577 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K K + I K Sbjct: 578 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 607 >gi|257091883|ref|YP_003165524.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044407|gb|ACV33595.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 735 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 8/175 (4%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTG++ D II+IGAV +++ N F + P +++HGI+D+ Sbjct: 547 VFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLVDPERFIRPEG-IRIHGISDD 605 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +P+ + DF N+ +AHNA FD+ F+ L+ ++DTL Sbjct: 606 MVRGQPNIEVVLPALHDFCND--TVLVAHNAAFDMRFLQ--LKEERTGVAFSQPVLDTLL 661 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++ HP+ + + I +H AL D+ ++V++KM+ +Q+ Sbjct: 662 LSGVLHPNQESHQLDSIAER-LGIGIEDRHNALGDACATAEVFLKMLPLLAQMGI 715 >gi|159046099|ref|YP_001534893.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12] gi|157913859|gb|ABV95292.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12] Length = 485 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 6/199 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGI 65 + ++FD ETTGL + D + +I A +++ F + P GR A +HGI Sbjct: 290 KYVIFDTETTGLLPERGDEVCQIAACRVVNGKMVKTEMFDTLVNP-GRPIPLSATNIHGI 348 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD + D P F + F A IAHNA FD+ F + I P Sbjct: 349 TDAMVADAPDFLTAGRAFHG--FADGAVLIAHNAPFDMAFFYRKQAEIGARFDHPVLDTV 406 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 LS A + ++ L++L +R +TI ++H AL D+ ++V++K++ Sbjct: 407 LLS-AVIYGQTEQHSLDALAERLNVTIPEEARHTALGDALATTEVFLKLLPMLQAKGIET 465 Query: 186 KTNEDRFFKEEKKTVPNIS 204 + K+ + + +++ Sbjct: 466 FGDLLAQTKKHARLLEDLN 484 >gi|315653430|ref|ZP_07906352.1| DNA polymerase III [Lactobacillus iners ATCC 55195] gi|315489355|gb|EFU78995.1| DNA polymerase III [Lactobacillus iners ATCC 55195] Length = 1424 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ + ++ + Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 462 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + Q+ HN +FD+GF+NA L+R N D + + Sbjct: 463 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 522 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ + F+ Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 577 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K K + I K Sbjct: 578 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 607 >gi|170754900|ref|YP_001781966.1| DNA polymerase III PolC [Clostridium botulinum B1 str. Okra] gi|169120112|gb|ACA43948.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum B1 str. Okra] Length = 1432 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 6/192 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG SKND+IIEIGAV++ +R F F+ P R + +L ITD+ Sbjct: 418 FVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127 + DK + I F +F + + +AHNA FD FIN + + + + T Sbjct: 476 MVDDKEAIDKILPRFIEFIGD--SVVVAHNAAFDASFINKNCKDLKIEFKNSVMDTVTLS 533 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + ++ + + HR+ A + +L + +M+ I Sbjct: 534 RFLFPELKRYKLNVIAKHLGISLENHHRAVDDAKATADILLKSF-EMLKEKEIITLHNLN 592 Query: 188 NEDRFFKEEKKT 199 E KK Sbjct: 593 KEFLGNINIKKE 604 >gi|227486439|ref|ZP_03916755.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] gi|227235620|gb|EEI85635.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] Length = 1463 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 78/203 (38%), Gaps = 8/203 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL D I EIGAV + + T T+ + P R + +++ GITD Sbjct: 448 FVVFDIETTGLLKYRDAITEIGAVRVENGEIT-ETYNQLINPE-RILPEKIVEITGITDA 505 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L DKP + F DF + + + N FDVGFI +R+ ++ Sbjct: 506 MLADKPKIDEVLPGFLDFCGD--SLIVGQNTDFDVGFIRENAKRLGLKFDPIYLDTLPMA 563 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-MVGGSQINFGFKT 187 A + K + I + H A D+ + ++IKM + + Sbjct: 564 RALFDDMGKFSLDKIARK---LDIPAFNHHRASDDARATAQIFIKMYKMIMEEEGLNLSK 620 Query: 188 NEDRFFKEEKKTVPNISLLKRDK 210 K S L K Sbjct: 621 INRLKTNYPKAKHETFSALAFAK 643 >gi|228986961|ref|ZP_04147087.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772739|gb|EEM21179.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 1433 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|229157394|ref|ZP_04285472.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342] gi|228626121|gb|EEK82870.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342] Length = 1433 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|229162754|ref|ZP_04290711.1| DNA polymerase III polC-type [Bacillus cereus R309803] gi|228620636|gb|EEK77505.1| DNA polymerase III polC-type [Bacillus cereus R309803] Length = 1433 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|206972660|ref|ZP_03233601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH1134] gi|218234060|ref|YP_002368619.1| DNA polymerase III PolC [Bacillus cereus B4264] gi|228960034|ref|ZP_04121698.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047504|ref|ZP_04193094.1| DNA polymerase III polC-type [Bacillus cereus AH676] gi|229071316|ref|ZP_04204539.1| DNA polymerase III polC-type [Bacillus cereus F65185] gi|229081073|ref|ZP_04213583.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2] gi|229111289|ref|ZP_04240842.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15] gi|229129094|ref|ZP_04258067.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4] gi|229152017|ref|ZP_04280212.1| DNA polymerase III polC-type [Bacillus cereus m1550] gi|229180094|ref|ZP_04307438.1| DNA polymerase III polC-type [Bacillus cereus 172560W] gi|229191987|ref|ZP_04318957.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876] gi|296504313|ref|YP_003666013.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171] gi|206732417|gb|EDZ49598.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH1134] gi|218162017|gb|ACK62009.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus B4264] gi|228591538|gb|EEK49387.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876] gi|228603303|gb|EEK60780.1| DNA polymerase III polC-type [Bacillus cereus 172560W] gi|228631366|gb|EEK88000.1| DNA polymerase III polC-type [Bacillus cereus m1550] gi|228654331|gb|EEL10196.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4] gi|228672065|gb|EEL27356.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15] gi|228702117|gb|EEL54593.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2] gi|228711770|gb|EEL63722.1| DNA polymerase III polC-type [Bacillus cereus F65185] gi|228723751|gb|EEL75106.1| DNA polymerase III polC-type [Bacillus cereus AH676] gi|228799550|gb|EEM46503.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pakistani str. T13001] gi|296325365|gb|ADH08293.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171] Length = 1433 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|229174484|ref|ZP_04302016.1| DNA polymerase III polC-type [Bacillus cereus MM3] gi|228609044|gb|EEK66334.1| DNA polymerase III polC-type [Bacillus cereus MM3] Length = 1433 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|228954094|ref|ZP_04116123.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805660|gb|EEM52250.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 1433 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|30021907|ref|NP_833538.1| DNA polymerase III PolC [Bacillus cereus ATCC 14579] gi|229146389|ref|ZP_04274760.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24] gi|81433857|sp|Q819Y5|DPO3_BACCR RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|29897463|gb|AAP10739.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579] gi|228637022|gb|EEK93481.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24] Length = 1435 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + I Sbjct: 478 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 536 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 593 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 594 LNDSMGQGDAYKRGRP 609 >gi|47569095|ref|ZP_00239784.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] gi|47554257|gb|EAL12619.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] Length = 1433 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|114321202|ref|YP_742885.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227596|gb|ABI57395.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] Length = 714 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 11/192 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +VFD E TGL+ + D II I V +++ T TF + P GR P +++ HGIT Sbjct: 509 FVVFDCEMTGLNPEGGDEIISIAGVRVVNGRVLTGETFDRIINP-GRPIPPGSVRFHGIT 567 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ ++DKP + +F F + A +AHNA FD+ FI+ +R D + Sbjct: 568 DDDVQDKPPIEVVLPQFKSFVGD--AVLVAHNAAFDMKFIS-MKEREAGVRFDNPVLDTL 624 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY---IKMMVGGSQINF 183 L A + L++LC RYGI I+ R H AL D+ +++ I+ + F Sbjct: 625 LLSALLDGDEEDHSLDALCDRYGIAITGR--HTALGDTLATAELLVRIIERLEAQGYQTF 682 Query: 184 GFKTNEDRFFKE 195 G R E Sbjct: 683 GEVMKASRMAAE 694 >gi|219683338|ref|YP_002469721.1| DNA polymerase III polC-type [Bifidobacterium animalis subsp. lactis AD011] gi|219620988|gb|ACL29145.1| DNA polymerase III polC-type [Bifidobacterium animalis subsp. lactis AD011] Length = 123 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 4/102 (3%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + M I D+ETTG ++NDRI EIGAV++ D +R F + P GR+ S +L Sbjct: 6 RIPMNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDR-FTQLVNP-GRRVSARITELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 GI++E L+D+P I +F +N + HN KFD+ F Sbjct: 64 GISNEMLEDQPVIEDILGDFIH--WTENDRLVGHNTKFDLSF 103 >gi|117920694|ref|YP_869886.1| DNA polymerase III subunit epsilon [Shewanella sp. ANA-3] gi|117613026|gb|ABK48480.1| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3] Length = 229 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 7/172 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL + R IEIGAV + T R F + P R NS Sbjct: 31 VVLDFETSGLSPNQGARAIEIGAVLIEQGQITAR-FSELMNPGFRINSFIEDYTGISNQM 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P + + + F +F + + +AHNA FD F++AE +I L Sbjct: 90 LAHAAPC-AEVMARFAEFIGKHH--LVAHNATFDQRFLDAEFSQIGHQYPGQFGCSLLL- 145 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ARR +P + N + R+ ++ + H AL D+ + ++++M+ Q Sbjct: 146 -ARRLYPEAINHQLATLVRHKQLPTNGTYHRALADAEMTGHLWLRMLADLKQ 196 >gi|312621985|ref|YP_004023598.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kronotskyensis 2002] gi|312202452|gb|ADQ45779.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 1402 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 5/220 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG DS+ D+IIEIGAV++ + R F F+ P G+ +L GI + Sbjct: 390 FVVVDIETTGFDSQRDKIIEIGAVKIENGQIIER-FSTFVDPEGK-IPVRISELTGIYQD 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRIIDTL 127 + P + EF + +AHNA+FD+GF+ + ++ Sbjct: 448 MVDKAPKLNDAILEFEK--FASGSILVAHNAQFDIGFLKKAYHECGIIFDYTYIDTLELS 505 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 S + + + + HR+ A + + + + K+ + G + + Sbjct: 506 RRLLTDLSSHKLNKVAEFLNVELKHHHRADSDAETTAGIFTSLLEKLKLRGYKWLKELNS 565 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 E + K + ++L +++ + K H + Sbjct: 566 IESNTKADLKSHSYHATILVKNQQGLKNLYKLVSYSHLEY 605 >gi|118478852|ref|YP_896003.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al Hakam] gi|196038559|ref|ZP_03105868.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus NVH0597-99] gi|196044683|ref|ZP_03111918.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB108] gi|225865592|ref|YP_002750970.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB102] gi|229092581|ref|ZP_04223732.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42] gi|229185845|ref|ZP_04313018.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1] gi|118418077|gb|ABK86496.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al Hakam] gi|196024718|gb|EDX63390.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB108] gi|196030967|gb|EDX69565.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus NVH0597-99] gi|225789766|gb|ACO29983.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB102] gi|228597557|gb|EEK55204.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1] gi|228690734|gb|EEL44510.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42] Length = 315 Score = 78.1 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I L Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVLL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + L +L + G S H A D + VY K + Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKLNKK 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + + KRD Sbjct: 183 ALDETVVYEAVKDILVRNKRDIEWI 207 >gi|229019012|ref|ZP_04175854.1| DNA polymerase III polC-type [Bacillus cereus AH1273] gi|229025258|ref|ZP_04181678.1| DNA polymerase III polC-type [Bacillus cereus AH1272] gi|228736011|gb|EEL86586.1| DNA polymerase III polC-type [Bacillus cereus AH1272] gi|228742340|gb|EEL92498.1| DNA polymerase III polC-type [Bacillus cereus AH1273] Length = 1433 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN++CK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTMCKKL--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|167635812|ref|ZP_02394121.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0442] gi|254739618|ref|ZP_05197312.1| DNA polymerase III PolC [Bacillus anthracis str. Kruger B] gi|167528769|gb|EDR91527.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0442] Length = 1433 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINIGFKKAGLEKTKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|226949776|ref|YP_002804867.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A2 str. Kyoto] gi|226841257|gb|ACO83923.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A2 str. Kyoto] Length = 1432 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 6/192 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG SKND+IIEIGAV++ +R F F+ P R + +L ITD+ Sbjct: 418 FVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127 + DK + I F +F N+ +AHNA FDV FIN + + + + T Sbjct: 476 MVDDKEAIDKILPRFIEFI--GNSVVVAHNAAFDVSFINKNCKDLKIEFKNSVMDTVTLS 533 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + ++ + + HR+ A + +L + +M+ I Sbjct: 534 RFLFPELKRYKLNVIAKHLGISLENHHRAVDDAKATADILLKAF-EMLKEKEIITLHNLN 592 Query: 188 NEDRFFKEEKKT 199 E KK Sbjct: 593 KEFLGNINIKKE 604 >gi|170761721|ref|YP_001787734.1| DNA polymerase III PolC [Clostridium botulinum A3 str. Loch Maree] gi|169408710|gb|ACA57121.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A3 str. Loch Maree] Length = 1432 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 6/192 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG +KND+IIEIGAV++ +R F F+ P GR + +L ITD+ Sbjct: 418 FVVFDLETTGFSNKNDKIIEIGAVKIEKGKIVDR-FSEFVNP-GRSIPDKITELTSITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127 ++DK + I F DF + + +AHNA FDV FIN + + + + T Sbjct: 476 MVQDKETIDKILPRFIDFIGD--SVVVAHNAAFDVSFINKNCKDLKIEFENSVMDTVTLS 533 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + ++ + + HR+ A + +L + +M+ I Sbjct: 534 RFLFPELKRYKLNVIAKHLGISLENHHRAVDDAKATADILLKSF-EMLKEKEIITLHNLN 592 Query: 188 NEDRFFKEEKKT 199 E KK Sbjct: 593 KEFLGNINIKKE 604 >gi|322806689|emb|CBZ04258.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065] Length = 1432 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 6/192 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG SKND+IIEIGAV++ +R F F+ P R + +L ITD+ Sbjct: 418 FVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127 + DK + I F +F N+ +AHNA FDV FIN + + + + T Sbjct: 476 MVDDKEAIDKILPRFIEFI--GNSVVVAHNAAFDVSFINKNCKDLKIEFKNSVMDTVTLS 533 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + ++ + + HR+ A + +L + +M+ I Sbjct: 534 RFLFPELKRYKLNVIAKHLGISLENHHRAVDDAKATADILLKAF-EMLKEKEIITLHNLN 592 Query: 188 NEDRFFKEEKKT 199 E KK Sbjct: 593 KEFLGNINIKKE 604 >gi|291538542|emb|CBL11653.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis XB6B4] Length = 905 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 7/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG ++IIEIGAV++ T R F F+ P +L I D+ Sbjct: 475 YVVFDLETTGFSPDKNKIIEIGAVKVEHGEITER-FSTFVNPE-VPIPYRIEELTSIRDD 532 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P +I +F +F + A +AHNA FD+ FI +R + L+ Sbjct: 533 MVIDAPKIETILPQFMEFCGD--AIMVAHNADFDMSFIIKNCERQGIEKEFTIIDTVALA 590 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R L+++ K G++ + H A+ D+ +++++K + Sbjct: 591 RILLPQ-LNRFKLDTVAKALGVS--LENHHRAVDDAGCTAEIFVKFVKMLHDRGMETLDQ 647 Query: 189 EDRFFKEEKKTVPNIS 204 ++ + +T+ ++ Sbjct: 648 VNQMGQASPETIMKMN 663 >gi|153938397|ref|YP_001391721.1| DNA polymerase III PolC [Clostridium botulinum F str. Langeland] gi|152934293|gb|ABS39791.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum F str. Langeland] gi|295319747|gb|ADG00125.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum F str. 230613] Length = 1432 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 6/192 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG SKND+IIEIGAV++ +R F F+ P R + +L ITD+ Sbjct: 418 FVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127 + DK + I F +F N+ +AHNA FDV FIN + + + + T Sbjct: 476 MVDDKEAIDKILPRFIEFI--GNSVVVAHNAAFDVSFINKNCKDLKIEFKNSVMDTVTLS 533 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + ++ + + HR+ A + +L + +M+ I Sbjct: 534 RFLFPELKRYKLNVIAKHLGISLENHHRAVDDAKATADILLKAF-EMLKEKEIITLHNLN 592 Query: 188 NEDRFFKEEKKT 199 E KK Sbjct: 593 KEFLGNINIKKE 604 >gi|228934882|ref|ZP_04097713.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824782|gb|EEM70583.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 315 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 76/205 (37%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + L +L + G S H A D + VY K + Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKLNKK 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + + KRD Sbjct: 183 ALDETVVYEAVKEILVRNKRDIEWI 207 >gi|82703123|ref|YP_412689.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC 25196] gi|82411188|gb|ABB75297.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC 25196] Length = 463 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 8/169 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG +DRIIEI + + ++ R ++ + P G P L GI++ Sbjct: 6 YVILDLETTGGTPLHDRIIEIALIRFEEGMESER-WETLVNP-GISIPPFITHLTGISNG 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD PSF I + F + A AHN +FD GF+ E +R+ L + Sbjct: 64 MVKDAPSFGDIAHRLYGFLDG--AVLAAHNVRFDYGFLKNEYRRMGAL-LQHRVLCTARL 120 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + L+++ +R+G+ R + ++ Y++M Sbjct: 121 SRKLYPQHKGHGLDAIMQRHGLKTEMRHRAMGDVELVA---AYLEMARR 166 >gi|52080261|ref|YP_079052.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580] gi|52785638|ref|YP_091467.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580] gi|52003472|gb|AAU23414.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC 14580] gi|52348140|gb|AAU40774.1| PolC [Bacillus licheniformis ATCC 14580] Length = 1438 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 5/197 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ R F+ F P+ R S ++L GITD+ Sbjct: 422 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIER-FERFANPH-RPLSATIIELTGITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD P + +F ++ + +AHNA FD+GFIN +R+ + +IDTL Sbjct: 480 MLKDAPEVEEVIRDFKEWVGD--HTLVAHNASFDIGFINVAYKRLLNSEKVQNPVIDTLE 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + R +P +N + I H A+ D+ + +KM+ ++ N + Sbjct: 538 LGRFLYPEFKNHRLNT-LCKKFDIELTQHHRAIYDTEATGYLLVKMLKDAAEKNILYHDQ 596 Query: 189 EDRFFKEEKKTVPNISL 205 + + + Sbjct: 597 LNENMGQSNAYQRSRPY 613 >gi|196036920|ref|ZP_03104304.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus W] gi|228928866|ref|ZP_04091898.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|195990475|gb|EDX54459.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus W] gi|228830673|gb|EEM76278.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 1433 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|228935132|ref|ZP_04097959.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824497|gb|EEM70302.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 1433 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|229029323|ref|ZP_04185411.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1271] gi|228731982|gb|EEL82876.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1271] Length = 934 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESMVKQAPLFQDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEVHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|229092858|ref|ZP_04223992.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42] gi|228690480|gb|EEL44263.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42] Length = 1433 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 476 MLIDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|167639871|ref|ZP_02398140.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0193] gi|177652036|ref|ZP_02934582.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0174] gi|254735856|ref|ZP_05193562.1| DNA polymerase III PolC [Bacillus anthracis str. Western North America USA6153] gi|167512272|gb|EDR87649.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0193] gi|172082405|gb|EDT67470.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0174] Length = 1433 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|30263821|ref|NP_846198.1| DNA polymerase III PolC [Bacillus anthracis str. Ames] gi|47529245|ref|YP_020594.1| DNA polymerase III PolC [Bacillus anthracis str. 'Ames Ancestor'] gi|49186668|ref|YP_029920.1| DNA polymerase III PolC [Bacillus anthracis str. Sterne] gi|52141670|ref|YP_085159.1| DNA polymerase III PolC [Bacillus cereus E33L] gi|65321145|ref|ZP_00394104.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Bacillus anthracis str. A2012] gi|165872624|ref|ZP_02217255.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0488] gi|170687849|ref|ZP_02879063.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0465] gi|170706900|ref|ZP_02897358.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0389] gi|190568456|ref|ZP_03021363.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis Tsiankovskii-I] gi|196042171|ref|ZP_03109454.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus NVH0597-99] gi|218904946|ref|YP_002452780.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH820] gi|227813274|ref|YP_002813283.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. CDC 684] gi|228947537|ref|ZP_04109827.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123331|ref|ZP_04252535.1| DNA polymerase III polC-type [Bacillus cereus 95/8201] gi|229601637|ref|YP_002868056.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0248] gi|254683475|ref|ZP_05147335.1| DNA polymerase III PolC [Bacillus anthracis str. CNEVA-9066] gi|254721996|ref|ZP_05183785.1| DNA polymerase III PolC [Bacillus anthracis str. A1055] gi|254756009|ref|ZP_05208040.1| DNA polymerase III PolC [Bacillus anthracis str. Vollum] gi|254759330|ref|ZP_05211355.1| DNA polymerase III PolC [Bacillus anthracis str. Australia 94] gi|301055308|ref|YP_003793519.1| DNA polymerase III subunit alpha [Bacillus anthracis CI] gi|30258465|gb|AAP27684.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. Ames] gi|47504393|gb|AAT33069.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. 'Ames Ancestor'] gi|49180595|gb|AAT55971.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. Sterne] gi|51975139|gb|AAU16689.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L] gi|164711656|gb|EDR17202.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0488] gi|170128318|gb|EDS97187.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0389] gi|170668165|gb|EDT18914.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0465] gi|190560460|gb|EDV14438.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis Tsiankovskii-I] gi|196027023|gb|EDX65647.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus NVH0597-99] gi|218536830|gb|ACK89228.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH820] gi|227006508|gb|ACP16251.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. CDC 684] gi|228660107|gb|EEL15743.1| DNA polymerase III polC-type [Bacillus cereus 95/8201] gi|228812057|gb|EEM58388.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229266045|gb|ACQ47682.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0248] gi|300377477|gb|ADK06381.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis str. CI] Length = 1433 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|302386245|ref|YP_003822067.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1] gi|302196873|gb|ADL04444.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1] Length = 1516 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 82/210 (39%), Gaps = 10/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG S +RIIEIGAV++ + + ++ F F+ P+ E KL GI D Sbjct: 492 YVVFDIETTGFSSSRNRIIEIGAVKVENGTIADK-FSTFVNPD-VPIPFEIEKLTGINDN 549 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + I F +F N+ +AHNA FDV FI R+N L+ Sbjct: 550 MVLPYPKINEILPRFLEFC--GNSVLVAHNAAFDVSFIAYNAARLNLAFEPTVIDTVALA 607 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + +S + H A+ D+ +++++ + + Sbjct: 608 RLLLPNLNRYKLDTVAKALV---VSLENHHRAVDDAGCTAEIFVAFVKMLRERGVE---T 661 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 D + I L + Sbjct: 662 LDELNGLSTMSADMIKKLPTHHVIILAAND 691 >gi|217961238|ref|YP_002339806.1| DNA polymerase III PolC [Bacillus cereus AH187] gi|229140459|ref|ZP_04269014.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26] gi|229197928|ref|ZP_04324644.1| DNA polymerase III polC-type [Bacillus cereus m1293] gi|217065194|gb|ACJ79444.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH187] gi|228585646|gb|EEK43748.1| DNA polymerase III polC-type [Bacillus cereus m1293] gi|228643020|gb|EEK99296.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26] Length = 1433 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|49478392|ref|YP_037879.1| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329948|gb|AAT60594.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 1433 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|323496243|ref|ZP_08101301.1| DNA polymerase III, alpha subunit [Vibrio sinaloensis DSM 21326] gi|323318520|gb|EGA71473.1| DNA polymerase III, alpha subunit [Vibrio sinaloensis DSM 21326] Length = 204 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 9/177 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV+L++ TFQ + P G + S GIT++ Sbjct: 8 VVLDFETTGLSPNMGDRAIEIGAVKLVNGEVV-DTFQQLMNP-GFRVSAFIEGYTGITNQ 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L PS + +EF DF +N +AHNA FD F++ EL+R+ + + + Sbjct: 66 MLSGAPSCDEVMTEFADFIRGEN--LVAHNASFDKRFLDDELERVKVAYRGEFACSLLIS 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + PS + K + H AL D+ + + +++ M+ Q Sbjct: 124 RRLHQDAPSHKLGDIVRYKHI---ENDGVFHRALADAQVTAKLWMVMVNDLQQRGIA 177 >gi|229018800|ref|ZP_04175648.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273] gi|229025042|ref|ZP_04181470.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272] gi|228736248|gb|EEL86815.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272] gi|228742492|gb|EEL92644.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273] Length = 315 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 4/162 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RPIPNRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPFFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + + + L +L + GI +S + + + Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQN 167 >gi|134299812|ref|YP_001113308.1| DNA polymerase III subunit alpha [Desulfotomaculum reducens MI-1] gi|134052512|gb|ABO50483.1| DNA polymerase III catalytic subunit, PolC type [Desulfotomaculum reducens MI-1] Length = 1426 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 5/202 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTG + D IIEIGAV+ L+ + R F + P ++ E KL GITDE Sbjct: 415 VIIDFETTGFSPQTDEIIEIGAVKYLNGEEVGR-FGTLVNPK-KEIPFEVTKLTGITDEM 472 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P + +F E A +AHNA FD+ F+ L++ K + I Sbjct: 473 VKDAPDGKEALTALSEFMGE--AVLVAHNASFDLSFLRVGLRKYLKQEVTNPAIDTLGVA 530 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL-LSDVYIKMMVGGSQINFGFKTN 188 + LN+L K + I +++ + + L ++++ + + + Sbjct: 531 RVLFPNLKNHKLNTLVKEFKIELTNHHRAVDDASATAKLWQIFLRKLAEQEISDVKTLSG 590 Query: 189 EDRFFKEEKKTVPNISLLKRDK 210 + +EK ++++L +D+ Sbjct: 591 MGQGVNQEKLKSRHVTILVKDE 612 >gi|332980705|ref|YP_004462146.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1 BON] gi|332698383|gb|AEE95324.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1 BON] Length = 288 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 7/174 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL+ ND+IIE+ AV+ D +R F + P +++ ITDE Sbjct: 115 FVAIDLETTGLNPINDKIIEVAAVKFKDGQIIDR-FTTLINPEIH-IPSGITRINHITDE 172 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + + +F + + + HNA FD+ F+ D + + Sbjct: 173 MVKDAPVLAEVMPCLVNFIED--SILVMHNASFDLKFLKHHAMNFGHDINNSYIDTLP-T 229 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 L ++ G I S H A D+ + V IK + + Sbjct: 230 CRNIFSGLENYKLPTIASHLG--ICGDSFHRACNDAEICGQVLIKCIETAKDRS 281 >gi|90414417|ref|ZP_01222394.1| putative DNA polymerase III [Photobacterium profundum 3TCK] gi|90324530|gb|EAS41086.1| putative DNA polymerase III [Photobacterium profundum 3TCK] Length = 214 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 15/194 (7%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL + DR IEIGAV + + +R FQ + P R +S + Sbjct: 16 IVLDFETTGLSPTQGDRAIEIGAVLMENGKVVDR-FQKLMNPGFRVSSFIEGYTGITNNM 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTL 127 P + + +F DF + N +AHNA FD F++AEL I + + Sbjct: 75 LRTAAPC-NEVMDQFTDFIGDYN--LVAHNASFDKRFLDAELDIIKRSYGGEFACSMLIA 131 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV------GGSQI 181 + P+ + K H AL DS + + ++++M+ Q Sbjct: 132 RRLYQNAPNHKLGSLVAYKNI---DHDGVFHRALADSEMTAKLWLQMLEDLQNQFHIPQP 188 Query: 182 NFGFKTNEDRFFKE 195 +F + K Sbjct: 189 SFALMQQVSKKTKA 202 >gi|237795859|ref|YP_002863411.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Ba4 str. 657] gi|229260819|gb|ACQ51852.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Ba4 str. 657] Length = 1432 Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 6/192 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG SKND+IIEIGAV++ +R F F+ P R + +L ITD+ Sbjct: 418 FVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPK-RIIPDKITELTSITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127 ++DK + I F DF + + +AHNA FDV FIN + + + + T Sbjct: 476 MVQDKETIDKILPRFIDFIGD--SVVVAHNADFDVSFINKNCKDLKIEFENSVMDTVTLS 533 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + ++ + + HR+ A + +L + +M+ I Sbjct: 534 RFLFPELKRYKLNVIAKHLGISLENHHRAVDDAKATADILLKSF-EMLKEKEIITLHNLN 592 Query: 188 NEDRFFKEEKKT 199 E KK Sbjct: 593 KEFLGNINIKKE 604 >gi|324327507|gb|ADY22767.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar finitimus YBT-020] Length = 315 Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + L +L + G S H A D + VY K + T Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + + KRD Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207 >gi|168184630|ref|ZP_02619294.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Bf] gi|182672306|gb|EDT84267.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Bf] Length = 1432 Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 6/192 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG SKND+IIEIGAV++ +R F F+ P R + +L ITD+ Sbjct: 418 FVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPK-RIIPDKITELTSITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127 ++DK + I F DF + + +AHNA FDV FIN + + + + T Sbjct: 476 MVQDKETIDKILPRFIDFIGD--SVVVAHNADFDVSFINKNCKDLKIEFENSVMDTVTLS 533 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + ++ + + HR+ A + +L + +M+ I Sbjct: 534 RFLFPELKRYKLNVIAKHLGISLENHHRAVDDAKATADILLKSF-EMLKEKEIITLHNLN 592 Query: 188 NEDRFFKEEKKT 199 E KK Sbjct: 593 KEFLGNINIKKE 604 >gi|153833352|ref|ZP_01986019.1| DNA polymerase III, alpha subunit [Vibrio harveyi HY01] gi|148870361|gb|EDL69287.1| DNA polymerase III, alpha subunit [Vibrio harveyi HY01] Length = 204 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 9/176 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV+++D +FQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPNMGDRAIEIGAVKIVDGEVV-DSFQQLMNP-GFRVSSFIEGYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L+ PS + + F +F +N IAHNA FD F++ EL+RI+ + + + Sbjct: 66 MLRTAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDTELERIDCGYSGEFACSLLVA 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + PS + K + H AL D+ + + +++ M+ Q Sbjct: 124 RRLIQDAPSHKLGELVRYKNI---ENDGVFHRALADAQVTAKLWLLMVEELEQSGI 176 >gi|229031267|ref|ZP_04187273.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271] gi|228730025|gb|EEL80999.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271] Length = 315 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + L +L + G S H A D + VY K + N T Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEETNRKSDTK 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + + KRD Sbjct: 183 VLDETAVYEAVKKMLVRNKRDIEWV 207 >gi|49478968|ref|YP_037688.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar konkukian str. 97-27] gi|301055098|ref|YP_003793309.1| DNA polymerase III subunit epsilon [Bacillus anthracis CI] gi|49330524|gb|AAT61170.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar konkukian str. 97-27] gi|300377267|gb|ADK06171.1| DNA polymerase III subunit epsilon [Bacillus cereus biovar anthracis str. CI] Length = 315 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + L +L + G S H A D + VY K + T Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + + KRD Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207 >gi|153954051|ref|YP_001394816.1| DNA polymerase III PolC [Clostridium kluyveri DSM 555] gi|219854664|ref|YP_002471786.1| hypothetical protein CKR_1321 [Clostridium kluyveri NBRC 12016] gi|146346932|gb|EDK33468.1| PolC [Clostridium kluyveri DSM 555] gi|219568388|dbj|BAH06372.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 1439 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 7/194 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTG ND IIEIGA+++ + + F F+ P R +L GITDE Sbjct: 426 FVIFDIETTGFSMTNDNIIEIGAIKIKEGKVVGK-FSEFVNPE-RPIPLTITQLTGITDE 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ S I +F +F N+ +AHNA FDVGFI + + L + Sbjct: 484 MVQNCESIKYILPKFMEFI--DNSVVVAHNANFDVGFIK---KNCMELNLKFKNPVMDTI 538 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + IS + H A+ D+ ++ ++ + N + Sbjct: 539 PLCKFLFPELKRFKLNVVAKHLDISLENHHRAVDDAGATCEILLRCFKMLKEKNILSLGD 598 Query: 189 EDRFFKEEKKTVPN 202 ++ F Sbjct: 599 LNKEFLSNIDVKKQ 612 >gi|302384787|ref|YP_003820609.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum WM1] gi|302195415|gb|ADL02986.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum WM1] Length = 235 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 7/191 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D+ETTGLD K D+IIEIGAV+++ T FQ F+ P RK + L GI+D Sbjct: 5 YIAVDLETTGLDPKLDKIIEIGAVKVVKGQMT-EHFQTFINP-FRKLESRVIILTGISDR 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P + EF + + + H+ FD F+ L+ Sbjct: 63 QLEASPGIGEVIGEFLE--FAEGLPVLGHHVIFDYSFLKRAAINEGYSFERRGIDTLKLA 120 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 P + +L + C +GI + H AL D+ +Y +M + + Sbjct: 121 RRF-MPPEEKKNLGAACGYFGIEQTMS--HRALADASAAHGLYQEMAKRYGKEAPEIFDS 177 Query: 189 EDRFFKEEKKT 199 + +K +K+ Sbjct: 178 QALIYKAKKEQ 188 >gi|169350436|ref|ZP_02867374.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552] gi|169292756|gb|EDS74889.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552] Length = 1439 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 4/172 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL +D I E GAV++ + +R Q F+ P G+ S L IT+E Sbjct: 402 YVAFDLETTGLSVIHDGITEFGAVKIKNGEVIDRM-QKFINP-GKTISSRISSLTNITNE 459 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K++P+ + E +FF + +AHNA FDVGF+N L+R N + I Sbjct: 460 MVKNEPTIDKVLPEIMEFFGD--CILVAHNASFDVGFLNENLRRSNMSEIKNPIIDSLAL 517 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 P L ++C+ Y + H A D+ +L DV+ M+ Q Sbjct: 518 ARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAKVLGDVFNLMIHQIMQ 569 >gi|265993833|ref|ZP_06106390.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] gi|262764814|gb|EEZ10735.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] Length = 143 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 58/144 (40%), Positives = 87/144 (60%), Gaps = 2/144 (1%) Query: 100 KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 FD+GFINAEL R+++ + I+DTL++ARRKHP N L++LCKRYGI SHR+ HG Sbjct: 1 MFDLGFINAELARLDQAEITSEHIVDTLALARRKHPIGPNSLDALCKRYGIDNSHRTLHG 60 Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITK 218 ALLD+ +L++VYI+++ G Q G + + + L R +PL RI+ Sbjct: 61 ALLDAQILAEVYIELIG-GKQTALGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISD 119 Query: 219 EELDEHDKTIQTLGKNAIWDRYIS 242 E H ++ +G A+W +Y+S Sbjct: 120 AERAAHAALVEKMGDKAVWKKYLS 143 >gi|228916240|ref|ZP_04079810.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843438|gb|EEM88516.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 315 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + L +L + G S H A D + VY K + T Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + + KR+ Sbjct: 183 VLDETAVYEAVKEILVRNKRNIEWI 207 >gi|297568933|ref|YP_003690277.1| DNA polymerase III, epsilon subunit [Desulfurivibrio alkaliphilus AHT2] gi|296924848|gb|ADH85658.1| DNA polymerase III, epsilon subunit [Desulfurivibrio alkaliphilus AHT2] Length = 238 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 73/183 (39%), Gaps = 9/183 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD E TGL+ + D I+ IGAV++ + TF V++ P R ++ +H IT Sbjct: 40 FVVFDTELTGLNRQRDEIVSIGAVKIRNLQILVGETFHVYIKP-SRALPKDSTLIHRITP 98 Query: 68 EFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + ++ P +++ +F F + A + ++ LD R+ Sbjct: 99 QQIEQAPQLATVLPDFISFCGQALLVGHYVGLDVAFLNRACRRHYGAVVSNPCLDTMRLA 158 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYG----ITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 T + + + R +++ G + + H A D+ + +++ ++ Sbjct: 159 QTYTEMQWQQYHDRFRMDATYSLAGLSQEYNLPDFTLHDAYEDALQTAYLFVFLIKKMRA 218 Query: 181 INF 183 Sbjct: 219 KGI 221 >gi|156975103|ref|YP_001446010.1| hypothetical protein VIBHAR_02830 [Vibrio harveyi ATCC BAA-1116] gi|156526697|gb|ABU71783.1| hypothetical protein VIBHAR_02830 [Vibrio harveyi ATCC BAA-1116] Length = 204 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 9/176 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV+++D +FQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPNMGDRAIEIGAVKIVDGEVV-DSFQQLMNP-GFRVSSFIEGYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L+ P+ + + F +F +N IAHNA FD F++AEL+RI + + + Sbjct: 66 MLRTAPNCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERIGCGYSGEFACSLLVA 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + PS + K + H AL D+ + + +++ M+ Q Sbjct: 124 RRLIQDAPSHKLGELVRYKNI---ENDGVFHRALADAQVTAKLWLLMVEELEQSGI 176 >gi|146293210|ref|YP_001183634.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32] gi|145564900|gb|ABP75835.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32] Length = 212 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 7/172 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL + R IEIGAV + + T R F + P R +S Sbjct: 14 VVLDFETSGLSPNQGARAIEIGAVLIENGVITQR-FSELMDPGFRISSFIEDYTGISNQM 72 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P + + F DF + + +AHNA FD F++AE I+ + + +L Sbjct: 73 LRNAAPC-HEVMARFADFIGDNH--LVAHNAAFDQRFLDAEFAHIHHE--YQGQFACSLL 127 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +ARR +P + N + RY ++ + H AL D+ + +++ M+ + Sbjct: 128 LARRLYPLASNHQLATLVRYKQLPNNGTFHRALADAEMTGHLWLAMLADLQR 179 >gi|312601484|gb|ADQ90739.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 168] Length = 1447 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 3/202 (1%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K++ ++FD+ETTGL + + IIE GA+ L + + + Q F+ P G+ S Sbjct: 386 KLKFVIFDLETTGLSAFYNEIIEFGAIVLQNGIEIEKH-QFFIKPTGKIPSAITKITGIS 444 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + S+ + + + +AHNA FD F+ ++ K L I Sbjct: 445 QKMIDETAISWEIALEKITKIIKD--SVLVAHNAAFDFSFLEQFFRQKAKKSLKNPIIDT 502 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L ++ KRY I H A D+ +L+ ++ + N Sbjct: 503 LEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIWKNFLAELKSQNIND 562 Query: 186 KTNEDRFFKEEKKTVPNISLLK 207 T+ + P K Sbjct: 563 LTSLSEIKNSIFELRPEKVFPK 584 >gi|37677155|ref|NP_937551.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016] gi|320159243|ref|YP_004191621.1| DNA polymerase III subunit alpha [Vibrio vulnificus MO6-24/O] gi|37201700|dbj|BAC97521.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016] gi|319934555|gb|ADV89418.1| DNA polymerase III alpha subunit [Vibrio vulnificus MO6-24/O] Length = 204 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 82/177 (46%), Gaps = 9/177 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV+L++ TFQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPNLGDRAIEIGAVKLVNGEVV-ETFQQLMNP-GFRVSSFIESYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L+ PS + + F +F +N IAHNA FD F++AEL+RIN D + + + Sbjct: 66 MLRSAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCDYSGEFACSLLVA 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + PS + K + H AL D+ + + +++ M+ Sbjct: 124 RRLIQDAPSHKLGELVRYKNI---DNDGVFHRALADAQMTAKLWLLMVEELEHSGIA 177 >gi|109898663|ref|YP_661918.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica T6c] gi|109700944|gb|ABG40864.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica T6c] Length = 769 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 2/123 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG RI EIGAV+++D ++ + P R+ +L GI+++ Sbjct: 604 YVVVDVETTGGCKPGHRITEIGAVKVIDSKVV-DSWSSLINPE-RRVPHFITRLTGISND 661 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F + + F + N + + + + Sbjct: 662 MVEDAPLFCEVIDDLEAFMQDCIFVAHNVNFDYGFFKLEYGRLERAFSMPKLCTVREMRK 721 Query: 129 IAR 131 Sbjct: 722 YYP 724 >gi|15614254|ref|NP_242557.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus halodurans C-125] gi|10174308|dbj|BAB05410.1| ATP-dependent DNA helicase [Bacillus halodurans C-125] Length = 942 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 84/235 (35%), Gaps = 25/235 (10%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V DIETTG ++ DRIIEIGAV + D +F + P R P +L GI+ Sbjct: 4 RFVVIDIETTGQSVAQGDRIIEIGAVVIEDEEAV-ESFCTLVNPE-RSIPPFIEELTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE +K P+F E ++AHN FD+ F+ L+ PL I Sbjct: 62 DEMVKGAPTFHQCIPELMSMLEG--GVFVAHNVHFDLSFLQKLLEHEGYGPLLVPIIDTV 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL--------LSDVYIKMMVGG 178 L++L ++ G+ + + + M + Sbjct: 120 ELSRILLPTEESYKLSALTEQLGLEHENPHRADSDAKVTADLLLLLLQKLRQLPLMTLQQ 179 Query: 179 SQINFG------------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 ++ + E++ L KP+ + +EE+ Sbjct: 180 LELLSDSWISDMGPILRQLIEKKMHDHAREEEVFDIYRQLAIRKPVKMKPQEEEI 234 >gi|113970108|ref|YP_733901.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-4] gi|113884792|gb|ABI38844.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4] Length = 229 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 67/172 (38%), Gaps = 7/172 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL + R IEIGAV + T R F + P R NS Sbjct: 31 VVLDFETSGLSPNQGARAIEIGAVLIEQGQITAR-FSELMNPGFRINSFIEDYTGISNQM 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P + +AHNA FD F++AE +I L Sbjct: 90 LAHAAPCAEVMARFAA---FIGKHHLVAHNAAFDQRFLDAEFAQIGHHYPGQFGCSLLL- 145 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ARR +P + N + R+ S + H AL D+ + ++++M+ Q Sbjct: 146 -ARRLYPEAINHQLATLVRHKQLPSDGTFHRALADAEMTGHLWLRMLADLKQ 196 >gi|157692739|ref|YP_001487201.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus pumilus SAFR-032] gi|157681497|gb|ABV62641.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032] Length = 930 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 7/169 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V DIETTG K D+II+I AV + + R + ++ P G+ +L GI Sbjct: 5 RFVVVDIETTGNSPKKGDKIIQIAAVVIENGQIVER-YSKYVNP-GKPIPGFIEQLTGIQ 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D F I E +D AHN FD+ F+N EL+ K+ LD I Sbjct: 63 QHMVDDAVFFEDIAQEVYDLIQGAYFV--AHNVHFDLNFLNDELKACGKNELDVLAIDTV 120 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L L + + H H A D+ + + +++ ++ Sbjct: 121 EISRILYPELEGYKLTELSEELMLPHDHP--HRADSDAEVTAMLFLTLL 167 >gi|42782681|ref|NP_979928.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 10987] gi|42738607|gb|AAS42536.1| DNA polymerase III, epsilon subunit, putative [Bacillus cereus ATCC 10987] Length = 315 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + L +L + G S H A D + VY K + T Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + + KRD Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207 >gi|229197718|ref|ZP_04324438.1| DNA polymerase III alpha subunit [Bacillus cereus m1293] gi|228585795|gb|EEK43893.1| DNA polymerase III alpha subunit [Bacillus cereus m1293] Length = 315 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + L +L + G S H A D + VY K + T Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKKKSNTE 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + + KRD Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207 >gi|221632241|ref|YP_002521462.1| DNA polymerase III subunit epsilon [Thermomicrobium roseum DSM 5159] gi|221156344|gb|ACM05471.1| DNA polymerase III, epsilon subunit [Thermomicrobium roseum DSM 5159] Length = 693 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 6/199 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL RIIEIGAV D R F V + P+ R+ ++L GI DE Sbjct: 86 FVALDVETTGLRPARHRIIEIGAVRYEDGCCVER-FSVLVNPH-RRLPVYIVRLTGIRDE 143 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L PSF + + F + I +N FD+ F+NAEL+RI + PL + Sbjct: 144 DLLTAPSFVDVAAAF--RVFLGESTVIGYNVGFDLDFLNAELRRIGQGPLPNPALDVLPL 201 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + R DL+++C+ G+ ++H AL D+ + +Y+ ++ Q+ + ++ Sbjct: 202 ARALLTANGRYDLDAICRSIGLA--RGTRHRALPDAEATAVLYLHLVERAEQVGYRSPSD 259 Query: 189 EDRFFKEEKKTVPNISLLK 207 V ++ + Sbjct: 260 LQPAATRRTIVVEPVARGR 278 >gi|323489585|ref|ZP_08094812.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2] gi|323396716|gb|EGA89535.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2] Length = 1435 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 7/175 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ + S + L GITD+ Sbjct: 421 FVVFDLETTGLSAVYDTIIELAAVKIKGGQIIDK-FESFANPH-HELSSTTIDLTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ P + ++ + + +AHNA FD+GF+ ++ D + + Sbjct: 479 MVKNAPEVEEVIRKYHE--WAGDHIMVAHNASFDMGFLYVCYKKYGIDTVHATIDTL-EL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + LN+L K++GI H A+ D+ S + ++ Q Sbjct: 536 ARMLHPELKNHRLNTLAKKFGIE--LTQHHRAIYDTEATSYLLTHLLKEADQKGI 588 >gi|258511090|ref|YP_003184524.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477816|gb|ACV58135.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 240 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 85/231 (36%), Gaps = 13/231 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D ETTGL R++E+ VE+ + + + P G PEA +H ITD Sbjct: 7 RFVVIDTETTGLPPDG-RVVELALVEVGLDREPQIVYSALVDP-GCPIPPEASAVHHITD 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + KP I+ + + + A +AHNA+FD G + + Sbjct: 65 RDVAGKPRLMQIWPKVMGYIGD--AILVAHNAEFDRGMLPETGRPWICS---------KR 113 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + ++ L GI + H AL D+ + + V+ + + + + Sbjct: 114 LAQHLWRDAPKHSNQVLRYWLGIDVEVGLPHRALGDAIVTAHVFQRELRAYLEAGYPDDV 173 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 F E V + K + + LD + +Q L + W Sbjct: 174 EALIAFAESPIEVQTMPFGKHKGMPLKDVPLDYLDRALRNMQDLSPDLRWS 224 >gi|206976138|ref|ZP_03237047.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus H3081.97] gi|217961012|ref|YP_002339580.1| DNA polymerase III subunit epsilon [Bacillus cereus AH187] gi|222097065|ref|YP_002531122.1| DNA polymerase iii subunit epsilon [Bacillus cereus Q1] gi|229140223|ref|ZP_04268781.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26] gi|206745592|gb|EDZ56990.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus H3081.97] gi|217066526|gb|ACJ80776.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH187] gi|221241123|gb|ACM13833.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1] gi|228643309|gb|EEK99582.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26] Length = 315 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + L +L + G S H A D + VY K + T Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCAFIEEEAKRKSNTE 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + + KRD Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207 >gi|229084648|ref|ZP_04216916.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-44] gi|228698671|gb|EEL51388.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-44] Length = 930 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I ++ AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQVAAVVVEDGEIL-EIFSSFVNPE-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ +K P F + + AHN FD F+ EL++ ++ +I Sbjct: 62 DEDLVKQAPLFCDVAPMIVELLQGAYFV--AHNVHFDWNFLREELKQAGYGEVNCQKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ + ++++++ + Q+ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALVTAELFLQFLNQLEQLPL 175 >gi|325983091|ref|YP_004295493.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212] gi|325532610|gb|ADZ27331.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212] Length = 463 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 6/173 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG+ DRI EIG + + +T R + + P G P +L GIT + Sbjct: 8 YVLLDLETTGVTPTQDRITEIGLIRYENGVETGR-WNTLINP-GINIPPFIQRLTGITQD 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+FS ++ + A AHNA+FD GF+ E +RI +++ T+ Sbjct: 66 MVDHAPTFSQVYETLLQWL--DQAVLCAHNARFDYGFLKNEFKRIGVT--FQKKLLCTVK 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++R+ +P + + I + + + + + M G Sbjct: 122 LSRKLYPQHHSHSLNAIIERFRLICDQRHRAMGDTEMIAAFIDVAMRELGEAT 174 >gi|228940696|ref|ZP_04103259.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973614|ref|ZP_04134196.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980172|ref|ZP_04140486.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407] gi|228779530|gb|EEM27783.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407] gi|228786075|gb|EEM34072.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818940|gb|EEM65002.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 324 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 19 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 77 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPTNKVIDTVFL 134 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 135 AKKYMKHAPNHKLETLKRMLGIRLSSHNALDDCITCAAVYQ 175 >gi|196044660|ref|ZP_03111895.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108] gi|225865799|ref|YP_002751177.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102] gi|229186057|ref|ZP_04313227.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1] gi|196024695|gb|EDX63367.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108] gi|225786021|gb|ACO26238.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102] gi|228597476|gb|EEK55126.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1] Length = 970 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|118479040|ref|YP_896191.1| DNA polymerase III, subunit alpha [Bacillus thuringiensis str. Al Hakam] gi|118418265|gb|ABK86684.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al Hakam] Length = 972 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 478 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK+ I H A+ D+ + +KM+ + F + Sbjct: 536 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 593 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 594 LNDSMGQGDAYKRGRP 609 >gi|42782909|ref|NP_980156.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987] gi|42738836|gb|AAS42764.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus ATCC 10987] Length = 970 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKEVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|324327715|gb|ADY22975.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus thuringiensis serovar finitimus YBT-020] Length = 970 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + I Sbjct: 476 MLTDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|152968358|ref|YP_001364142.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans SRS30216] gi|151362875|gb|ABS05878.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans SRS30216] Length = 224 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 8/184 (4%) Query: 3 RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+ + R V D+ETTGL + DR+++I L R++ + P+ P Sbjct: 20 RRYRHRYAVLDVETTGLRPETGDRVVQIAVTLLDARGTVERSWSSLVDPHR---DPGPTH 76 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGIT E L P+F+ + + ++AHNA+FD F++AE++ Sbjct: 77 VHGITAERLAGAPTFAQLAPTVAGLLDG--RVFVAHNARFDWKFVSAEMRAAGVHLPVRQ 134 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R+ R P L +L + +G+ H A D+ +L +V + ++ + Sbjct: 135 RLCTWELAQRLDLPVENLKLATLAEHWGVR--QLRPHDAEDDTRVLVEVLREELLDAAGQ 192 Query: 182 NFGF 185 Sbjct: 193 RLDL 196 >gi|310658999|ref|YP_003936720.1| DNA polymerase III polc [Clostridium sticklandii DSM 519] gi|308825777|emb|CBH21815.1| DNA polymerase III PolC [Clostridium sticklandii] Length = 1417 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 7/227 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + +D I EIGAV++ + +F + P+ + +L GIT++ Sbjct: 406 YVVFDIETTGFSNTSDEITEIGAVKIRNKEII-DSFGELINPH-MPIPLKVQELTGITND 463 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KDKPS + F +F + +AHN+ FD+GFI A+ +R+N + LS Sbjct: 464 LIKDKPSIDEVLPRFLEFVGS--SILVAHNSDFDMGFIRAKAKRLNLAFENKDIDTLKLS 521 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + +H + L+ +++M++ F + Sbjct: 522 RILLPNLKRHKLNLITNHLGISLENHHRAVDDAKATALVFIKFMEMLIDKDINTFEMVND 581 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + + +I+++ RD + K H I KN Sbjct: 582 KLGKLDYKSIPSNHITIIARDYTGLKNLYKLISASH---IDYFYKNP 625 >gi|157375547|ref|YP_001474147.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157317921|gb|ABV37019.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 208 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 83/202 (41%), Gaps = 13/202 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + IV D ETTGL + DR IEIGAV+L D TFQ + P G + S Sbjct: 1 MTTRAANSVIVLDFETTGLSPNQGDRAIEIGAVKLQDGIVV-DTFQELMNP-GFRVSGFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+ L P + + ++F F N +AHNA FD F++ + Sbjct: 59 EGYTGITNAMLNSAPPCNEVMAQFAGFIGNDN--LVAHNASFDKRFLD--AELDGIGRTY 114 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ IARR + ++ N Y + H AL DS + + +++KM+ Sbjct: 115 GGEFACSMLIARRLYQAAPNHKLGGLVEYKQIENDGVFHRALADSEVTAKLWLKMLEDMQ 174 Query: 180 ------QINFGFKTNEDRFFKE 195 +F + K Sbjct: 175 DDYQIASPSFNLMQQLSKKSKS 196 >gi|114047347|ref|YP_737897.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-7] gi|113888789|gb|ABI42840.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7] Length = 239 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 67/172 (38%), Gaps = 7/172 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL + R IEIGAV + T R F + P R NS Sbjct: 41 VVLDFETSGLSPNQGARAIEIGAVLIEQGQITAR-FSELMNPGFRINSFIEDYTGISNQM 99 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P + +AHNA FD F++AE +I L Sbjct: 100 LAHAAPCAEVMARFAA---FIGKHHLVAHNAAFDQRFLDAEFAQIGHQYPGQFGCSLLL- 155 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ARR +P + N + R+ + + H AL D+ + ++++M+ Q Sbjct: 156 -ARRLYPEAINHQLATLVRHKQLPTDGTFHRALADAEMTGHLWLRMLADLKQ 206 >gi|212640084|ref|YP_002316604.1| Exonuclease [Anoxybacillus flavithermus WK1] gi|212561564|gb|ACJ34619.1| Exonuclease [Anoxybacillus flavithermus WK1] Length = 222 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 4/171 (2%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTG DR+IEIGAV++ + TF ++ PN R P ++L IT+E Sbjct: 31 VFDTETTGFHVATVDRLIEIGAVQVKGTAVIEDETFHTYVNPN-RDLPPVIVELTNITEE 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K P+ +F+ F ++ + + F+ R K IDTL Sbjct: 90 KVKHAPTAIEALQQFFQFVEQKQSVCFVGHYISFDLFVLKHELRREKMKFRKPTFIDTLD 149 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + PS + +H A+ D+ + ++++++ Sbjct: 150 LIGFIAPSYDMRDLERYAQA-FGTRMYERHSAIGDALTTAYLFVELLQQFR 199 >gi|54302908|ref|YP_132901.1| putative DNA polymerase III [Photobacterium profundum SS9] gi|46916332|emb|CAG23101.1| putative DNA polymerase III [Photobacterium profundum SS9] Length = 214 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 15/194 (7%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL + DR IEIGAV + + +R FQ + P R +S + Sbjct: 16 IVLDFETTGLSPTQGDRAIEIGAVLMENGEVVDR-FQKLMNPGFRVSSFIESYTGITNNM 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDPSRIIDTL 127 P + +F DF + N +AHNA FD F++AEL IN+ + + + Sbjct: 75 LRTAAPC-DEVMDQFTDFIGDYN--LVAHNASFDKRFLDAELDIINRSYGGEFACSMLIA 131 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS------QI 181 + P+ + K H AL DS + + ++++M+ Q Sbjct: 132 RRLYQNAPNHKLGSLVAYKNI---DHDGVFHRALADSEMTAKLWLQMLEDMRNQFHIIQP 188 Query: 182 NFGFKTNEDRFFKE 195 +F + K Sbjct: 189 SFTLMQQVSKKTKA 202 >gi|240146857|ref|ZP_04745458.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82] gi|257200990|gb|EEU99274.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82] Length = 697 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 7/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG ++IIEIGAV+++ T R F F+ P +L I D+ Sbjct: 475 YVVFDLETTGFSPDKNKIIEIGAVKVVHGEITER-FSTFVNPE-VPIPYRIEELTSIRDD 532 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P +I +F +F + A +AHNA FD+ FI +R + L+ Sbjct: 533 MVIDAPKIETILPQFMEFCGD--AIMVAHNADFDMSFIIKNCERQGIEKEFTIIDTVALA 590 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R L+++ K G++ + H A+ D+ +++++K + Sbjct: 591 RILLPQ-LNRFKLDTVAKALGVS--LENHHRAVDDAGCTAEIFVKFVKMLHDRGMETLDQ 647 Query: 189 EDRFFKEEKKTVPNIS 204 ++ + +T+ ++ Sbjct: 648 VNQMGQASPETIMKMN 663 >gi|228916455|ref|ZP_04080021.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843034|gb|EEM88116.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 1433 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F + + +AHNA FD+GFIN ++ + I Sbjct: 476 MLTDAPEVDEVFKKFEKWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK+ I H A+ D+ + +KM+ + F + Sbjct: 534 ARFLFPEMKNHRLNTLCKKM--DIELTQHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + Sbjct: 592 LNDSMGQGDAYKRGRP 607 >gi|309808831|ref|ZP_07702716.1| putative DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 01V1-a] gi|308167957|gb|EFO70090.1| putative DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 01V1-a] Length = 946 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ + ++ + Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 462 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + Q+ HN +FD+GF+NA L+R N D + + Sbjct: 463 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 522 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ + F+ Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 577 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K K + I K Sbjct: 578 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 607 >gi|90023051|ref|YP_528878.1| DNA-directed DNA polymerase [Saccharophagus degradans 2-40] gi|89952651|gb|ABD82666.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40] Length = 215 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 75/172 (43%), Gaps = 7/172 (4%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV L + +R FQ + P G + S GI + Sbjct: 16 VVLDFETTGLSPDMGDRAIEIGAVRLHNGEIVDR-FQALMNP-GFQISGFIASYTGIDNS 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + F ++ N +AHNA FD F++ + +L Sbjct: 74 MLAKAPPCDEVMDAFANYIGNDN--LVAHNASFDKRFLD--AELYRIGRSYSGDFTCSLL 129 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ARR P++ N ++ S + H AL DS + + V++ M++ Q Sbjct: 130 AARRLFPNAENHKLGTLVKHTKLQSDGAFHRALYDSEMTAKVWMVMLMQLQQ 181 >gi|228909419|ref|ZP_04073244.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200] gi|228850196|gb|EEM95025.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200] Length = 318 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 71 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 129 AKKYMKHAPNHKLETLKRILGIRLSSHNAFDDCITCAAVYQ 169 >gi|257784354|ref|YP_003179571.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469] gi|257472861|gb|ACV50980.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469] Length = 342 Score = 76.9 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 68/192 (35%), Gaps = 7/192 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGLD IIEI A++++D T F + P R+ A ++ IT+ Sbjct: 78 YVVVDLETTGLDVHYCEIIEIAALKVVDGKIT-EEFSSLIHPP-REIPSGATAINHITNH 135 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ P+ + +F F I HN+ + E D Sbjct: 136 MVKNAPTLDKVIPQFDTFVKG--FPLIGHNSLRYDAIVLEENFFRRDFLCDYVWYDTYKL 193 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + P + + H H AL D ++ +Y KM K Sbjct: 194 ARQILEPPYKLINIAKRLNV---KQHGKAHRALADCYMTYGIYEKMREISIATTENVKCI 250 Query: 189 EDRFFKEEKKTV 200 E K + T Sbjct: 251 EKYTDKNTESTK 262 >gi|295397429|ref|ZP_06807516.1| DNA polymerase III [Aerococcus viridans ATCC 11563] gi|294974330|gb|EFG50070.1| DNA polymerase III [Aerococcus viridans ATCC 11563] Length = 314 Score = 76.9 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ DIETTGL ND I+E+ A+ + D+ +RTF + PN R S L GI++ Sbjct: 25 YVMIDIETTGLKPSNDEILELSAIRIRDHQ-MDRTFSTLVQPN-RPISGFITNLTGISNH 82 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P EF DF E + +N FD+ FI + P+ + Sbjct: 83 MVMTAPPIEQAIPEFLDFIQE--DIILGYNVNFDLSFIYDTAVNLYNFPVRNDYLDVLTI 140 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + + + L ++ + YGI+ H L D ++ +VY ++ Q Sbjct: 141 ARKLVTETPNHKLGTMAQFYGISYEGA--HRGLTDCYITVEVYNQLFNQAKQ 190 >gi|254443946|ref|ZP_05057422.1| exonuclease, DNA polymerase III, epsilon subunit family [Verrucomicrobiae bacterium DG1235] gi|198258254|gb|EDY82562.1| exonuclease, DNA polymerase III, epsilon subunit family [Verrucomicrobiae bacterium DG1235] Length = 205 Score = 76.9 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV + T R FQ + P R S GIT+ Sbjct: 8 VVLDFETTGLSPSLGDRAIEIGAVRIEGGEVTGR-FQELMNPGCR-ISGFIEDYTGITNG 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D + F +F N +AHNA FD F++AEL RI++ + + ++ Sbjct: 66 MLRDAEPCEVVMERFAEFIGGHN--LVAHNASFDQRFLDAELARISQRRV--GDFVCSML 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR + N RY H AL DS + + ++I+M+ Sbjct: 122 AARRLFQDAPNHQLGTLVRYANFSVDGVFHRALYDSEMTTKLWIRML 168 >gi|258511618|ref|YP_003185052.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478344|gb|ACV58663.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 952 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 4/107 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I+ D+ETTGLD + I+EIGA+ + TF + P R E +L G++ Sbjct: 1 MEWIIVDLETTGLDPERAEILEIGALRVRGGEIV-DTFHTLVRPE-RPIPDEITRLTGLS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 D + PS F + H+ F+ F+ + R Sbjct: 59 DADVAGAPSEREALMRFAG--FAGHTPMAGHHWVFERSFLLHRVARY 103 >gi|229824922|ref|ZP_04450991.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC 49176] gi|229790925|gb|EEP27039.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC 49176] Length = 1463 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 12/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG KN RIIEIGAV+++ ++ F F+ P + E KL IT + Sbjct: 436 VVFDIETTGFGPKNCRIIEIGAVKVMGGKVIDK-FSAFVNPK-QSIPEEITKLTSITQDM 493 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P I F +F +AHNA FD FI ++R+ + T+S Sbjct: 494 VINEPEIDVILPAFLEFCKGCF--LVAHNASFDTSFIFENMKRLGLNEDFTIADTVTISR 551 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-----MVGGSQINFG 184 L+++ +R GIT+ H H A+ D+ +++YIK+ G+++ Sbjct: 552 VLLPG-LKNYKLDTVAERLGITLEH--HHRAVDDAGCTAEIYIKLCELAVTKYGNELLGN 608 Query: 185 FKTNED 190 F TNE Sbjct: 609 FNTNEG 614 >gi|83310642|ref|YP_420906.1| DNA polymerase III [Magnetospirillum magneticum AMB-1] gi|82945483|dbj|BAE50347.1| DNA polymerase III [Magnetospirillum magneticum AMB-1] Length = 412 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 8/167 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +VFD ETTGL + D+I+ I V +++ + +F + P GR E+++ HGIT Sbjct: 219 FVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNP-GRPIPAESIRYHGIT 277 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ + DKP + +F + + A +AHNA FD+ F+ + + P Sbjct: 278 DDMVVDKPPAGVVLPQFRSYVAD--AVLVAHNAAFDLKFLRMREKDMGIRFDIPVLDTMI 335 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 LS P + + L+ +C RYGI I +H AL D+ + + V ++ Sbjct: 336 LS-NFLDGPDAGHSLDDICDRYGIEI--TDRHTALGDAMVTAAVLLR 379 >gi|229016898|ref|ZP_04173826.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1273] gi|229023104|ref|ZP_04179618.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1272] gi|228738250|gb|EEL88732.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1272] gi|228744459|gb|EEL94533.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1273] Length = 934 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEVHCPKVDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++I+ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFIQFLNEIEKLPL 175 >gi|121998681|ref|YP_001003468.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1] gi|121590086|gb|ABM62666.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1] Length = 707 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 8/176 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 ++FD ETTGL + D II I V +++ F+ + P GR ++K HGI Sbjct: 514 FVIFDTETTGLAPSEGDEIISIAGVRMVNGRILEGECFEQLVNP-GRPIPKASIKFHGIR 572 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE + DKP +++ +F F + + +AHNA FD+ FI + + +P Sbjct: 573 DEMVADKPGIATVLPQFSAFVGD--SVLVAHNAAFDMKFIRLKEGQCGLKFENPVLDTLL 630 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 LS+ H + + L ++ R G+ I +H AL D+ + +++ +M+ + Sbjct: 631 LSVFLHDH-TPEHTLEAIANRLGVEI--SGRHTALGDTLVTGEIFAQMLPLLEERG 683 >gi|228922317|ref|ZP_04085624.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837372|gb|EEM82706.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 318 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 71 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169 >gi|75760700|ref|ZP_00740725.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228902109|ref|ZP_04066273.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222] gi|74491818|gb|EAO55009.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228857535|gb|EEN02031.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222] Length = 318 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 71 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169 >gi|299823038|ref|ZP_07054924.1| DNA polymerase III PolC [Listeria grayi DSM 20601] gi|299816567|gb|EFI83805.1| DNA polymerase III PolC [Listeria grayi DSM 20601] Length = 1470 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P GR S + L GITD+ Sbjct: 454 YVVFDVETTGLSAVYDTIIELAAVKMENGQVV-DTFESFIDP-GRPLSATIINLTGITDD 511 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK ++ F ++ + A +AHNA FD+GF+N + D + + I Sbjct: 512 MLKGSDDIETVLKRFKEWCGD--AVLVAHNASFDMGFLNTAYSKAGIDKAENAVIDTLEL 569 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L K++ I H A+ D+ + + K++ ++++ N Sbjct: 570 ARFLYPHFKNHRLNTLTKKFNIV--LEQHHRAVFDAEATAYLAWKLIKDANEMHEITNHN 627 Query: 189 EDRFFKEEKKTVPNISLL 206 + + E + Sbjct: 628 QLNNYMGEGEAYKRARPF 645 >gi|229162442|ref|ZP_04290403.1| DNA polymerase III alpha subunit [Bacillus cereus R309803] gi|228620921|gb|EEK77786.1| DNA polymerase III alpha subunit [Bacillus cereus R309803] Length = 315 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLLEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166 >gi|229061173|ref|ZP_04198523.1| DNA polymerase III alpha subunit [Bacillus cereus AH603] gi|228718044|gb|EEL69684.1| DNA polymerase III alpha subunit [Bacillus cereus AH603] Length = 318 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + + I Sbjct: 71 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNNVIDTVFL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169 >gi|161507686|ref|YP_001577640.1| DNA polymerase [Lactobacillus helveticus DPC 4571] gi|160348675|gb|ABX27349.1| DNA polymerase [Lactobacillus helveticus DPC 4571] Length = 1438 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 421 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH---HPLSEQTINLTSIT 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R + + Sbjct: 477 DEMVSAADDEDVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLSEITQPVVDTLEV 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y +++ H H A D+ + K++ + N Sbjct: 537 SRLLHPEQNRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMYKLLDAFKKKYNEDNLN 594 Query: 189 EDRFFKEEKKTVPNISLL 206 + + Sbjct: 595 NLNGYAAHGEVYKRARPS 612 >gi|258653407|ref|YP_003202563.1| hypothetical protein Namu_3243 [Nakamurella multipartita DSM 44233] gi|258556632|gb|ACV79574.1| DNA polymerase III, epsilon subunit [Nakamurella multipartita DSM 44233] Length = 613 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 47/203 (23%), Positives = 74/203 (36%), Gaps = 4/203 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + I EIGAV++ F + P GR P+ L GIT+ Sbjct: 49 FVVVDLETTGGSPATEAITEIGAVKVRGGQVLGE-FATLVDP-GRTIPPQITMLTGITNA 106 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P SS+ F + + + +AHNA+FDVGF+ A R P+ + Sbjct: 107 MVYDAPRISSVLPAFLE--FARGSVLVAHNARFDVGFLRAACARQQVPWPGPAVVDTVRL 164 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + + R H AL D+ DV + + Sbjct: 165 ARKVLPRAEAPSVRLSALAALLGARTRPDHRALTDARATVDVLHALFERLGSLGVHSLAE 224 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 ++ L P Sbjct: 225 LQDASRDVAPQRRRKRWLADRLP 247 >gi|229047293|ref|ZP_04192892.1| DNA polymerase III alpha subunit [Bacillus cereus AH676] gi|228724035|gb|EEL75381.1| DNA polymerase III alpha subunit [Bacillus cereus AH676] Length = 318 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 71 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169 >gi|229080815|ref|ZP_04213333.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2] gi|229191695|ref|ZP_04318674.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876] gi|228591857|gb|EEK49697.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876] gi|228702549|gb|EEL55017.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2] Length = 318 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 71 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169 >gi|239995207|ref|ZP_04715731.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC 27126] Length = 711 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 5/164 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG +S +RI EIG V+L+ + +R FQ L P R+ +L GI+D+ Sbjct: 543 YVVVDIETTGGNSSYNRITEIGMVKLVGGKEVDR-FQTLLNPQ-RRIPSNITRLTGISDD 600 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDTL 127 + D P F+ + + ++A ++AHN FD GFI E + + + Sbjct: 601 MVADAPLFAEVAEHVAN--FTEDAVFVAHNVNFDYGFIKQEFARLEQSFRRPKMCTVREM 658 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 PS + + HR+ A + LL + Sbjct: 659 RRTYPGLPSYSLANLTKHFHIEMEQHHRALSDAKAAAELLKLAF 702 >gi|218898703|ref|YP_002447114.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus G9842] gi|218544955|gb|ACK97349.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus G9842] Length = 315 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166 >gi|114565211|ref|YP_752725.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB 400] gi|114336504|gb|ABI73886.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB 400] Length = 204 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 4/173 (2%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV+L++ TFQ + P GR+ + + GI+++ Sbjct: 8 VVLDFETTGLSPDNGDRAIEIGAVKLVNGQIV-DTFQELINP-GRRVNSFIEQYTGISND 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK P+ + +F F + N + +++ ++ + Sbjct: 66 MLKHAPTSKQVMGQFAKFIDGFNLVAHNASFDKKFLDAEFSHSKLHYSGQFACSLLLSRR 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL-LSDVYIKMMVGGSQ 180 I++ L + + HR+ A + SHL L + + + Q Sbjct: 126 ISQDAPNHKLGTLVDHHQLPNDGVFHRALADATMTSHLWLHQIDLLQLQLPKQ 178 >gi|319426278|gb|ADV54352.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200] Length = 212 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 7/172 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL + R IEIGAV + + T R F + P R ++ Sbjct: 14 VVLDFETSGLSPNQGARAIEIGAVLIENGVITQR-FSELMDPGFRISTFIEDYTGISNQM 72 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P + + F DF + + +AHNA FD F++AE I+ + +L Sbjct: 73 LRNAAPC-HEVMARFADFIGDNH--LVAHNAAFDQRFLDAEFAHIHHQ--YQGQFACSLL 127 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +ARR +P + N + RY ++ + H AL D+ + +++ M+ + Sbjct: 128 LARRLYPLASNHQLATLVRYKQLPNNGTFHRALADAEMTGHLWLAMLADLQR 179 >gi|260101367|ref|ZP_05751604.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075] gi|260084819|gb|EEW68939.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075] Length = 1436 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH---HPLSEQTINLTSIT 474 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R + + Sbjct: 475 DEMVSAADDEDVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLSEITQPVVDTLEV 534 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y +++ H H A D+ + K++ + N Sbjct: 535 SRLLHPEQNRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMYKLLDAFKKKYNEDNLN 592 Query: 189 EDRFFKEEKKTVPNISLL 206 + + Sbjct: 593 NLNGYAAHGEVYKRARPS 610 >gi|323466335|gb|ADX70022.1| DNA polymerase subunit III [Lactobacillus helveticus H10] Length = 1436 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH---HPLSEQTINLTSIT 474 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R + + Sbjct: 475 DEMVSAADDEDVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLSEITQPVVDTLEV 534 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y +++ H H A D+ + K++ + N Sbjct: 535 SRLLHPEQNRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMYKLLDAFKKKYNEDNLN 592 Query: 189 EDRFFKEEKKTVPNISLL 206 + + Sbjct: 593 NLNGYAAHGEVYKRARPS 610 >gi|157363106|ref|YP_001469873.1| DNA polymerase III PolC [Thermotoga lettingae TMO] gi|157313710|gb|ABV32809.1| DNA polymerase III, alpha subunit [Thermotoga lettingae TMO] Length = 1379 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 4/104 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R ++ DIETTGL IIEIGAV + + T+ F F+ P+ + N ++ ITD Sbjct: 369 RYVIVDIETTGLHPMFSEIIEIGAVAIENGQITDE-FHSFVKPSEKLN-AFTVQFTKITD 426 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 + L ++PS + +F +F + +AHNA FD F+ ++ Sbjct: 427 QMLANQPSIEEVLPKFMEFCKD--TTLVAHNANFDYRFLRYWIE 468 >gi|308068695|ref|YP_003870300.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681] gi|305857974|gb|ADM69762.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681] Length = 1438 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 6/174 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL ++IIEI AV++ D + +R + F+ P+ R +L I DE Sbjct: 421 YVVFDIETTGLSVTQNKIIEIAAVKMHDGKEVDR-YATFVNPHER-IPYNIQQLTNINDE 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + EF +A +AHNA+FDVGFI A L+ + + + Sbjct: 479 MVKDAPDVEPVMKEFVA--FAGDAVLVAHNARFDVGFIQATLRNMGLPEMTNPVLDTLEL 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + LN+L +Y + S H A+ D+ L++V ++ QI Sbjct: 537 ARLLFPTMKNHRLNTLTTKYKVA--LESHHRAIDDTVALTEVLNGLLNDAEQIK 588 >gi|229111034|ref|ZP_04240593.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15] gi|228672397|gb|EEL27682.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15] Length = 318 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 71 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169 >gi|326941329|gb|AEA17225.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar chinensis CT-43] Length = 315 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPTNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNALDDCITCAAVYQ 166 >gi|228959796|ref|ZP_04121471.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799926|gb|EEM46868.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pakistani str. T13001] Length = 318 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 71 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169 >gi|313678200|ref|YP_004055940.1| DNA polymerase III subunit alpha [Mycoplasma bovis PG45] gi|312950476|gb|ADR25071.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma bovis PG45] Length = 1458 Score = 76.1 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 2/188 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FDIETTGL K IIE GAV++ K +T Q F+ P + S Sbjct: 424 YVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGKTTQFFIKPKDKIGSFTTELTGITQQM 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +D + IAHNAKFD F+ + + N + I ++ Sbjct: 484 LDSKGLYIKEGLEKIYDCLDG--KIAIAHNAKFDFNFLKEQFRLNNMQFPRVTVIDTLVA 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R+ L + R G+ H D+ +L++V++ ++ + + Sbjct: 542 SRIGFPGYKRHKLEDVASRLGVVYDPNVAHRGDYDAKVLANVWVNIISELNAKGIFTFDD 601 Query: 189 EDRFFKEE 196 ++ E Sbjct: 602 LSKYSSNE 609 >gi|228966505|ref|ZP_04127558.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228793227|gb|EEM40777.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar sotto str. T04001] Length = 315 Score = 76.1 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166 >gi|323694146|ref|ZP_08108325.1| DNA polymerase III subunit epsilon [Clostridium symbiosum WAL-14673] gi|323501863|gb|EGB17746.1| DNA polymerase III subunit epsilon [Clostridium symbiosum WAL-14673] Length = 226 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50 + D+ETTGLD K+D+IIEIGAV ++D + TF F+ P Sbjct: 26 YVAIDLETTGLDPKHDKIIEIGAVLVIDG-EIKETFSTFVNP 66 >gi|194017045|ref|ZP_03055658.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus pumilus ATCC 7061] gi|194011651|gb|EDW21220.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus pumilus ATCC 7061] Length = 930 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 7/178 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V DIETTG K D+II+I AV + + R + ++ P G+ +L GI Sbjct: 5 RFVVVDIETTGNSPKKGDKIIQIAAVVIENGQIVER-YSKYVNP-GKAIPGFIEQLTGIQ 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D F I E +D AHN FD+ F+N EL+ K+ LD I Sbjct: 63 QHMVDDAVFFEDIAQEVYDLIQGAYFV--AHNVHFDLNFLNDELKACGKNELDVLAIDTV 120 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L L + + H H A D+ + + +++ ++ + Sbjct: 121 EISRILYPELEGYKLTELSEELMLPHDHP--HRADSDAEVTAMLFLTLLHQLTHTPPN 176 >gi|46202557|ref|ZP_00053013.2| COG5002: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 711 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 8/167 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +VFD ETTGL + D+I+ I V +++ + +F + P GR E+++ HGIT Sbjct: 518 FVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNP-GRSIPAESIRYHGIT 576 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE + DKP + +F + + A +AHNA FD+ F+ + + P Sbjct: 577 DEMVIDKPPAGVVLPQFRSYVAD--AVLVAHNAAFDLKFLRMREKEMGVRFDSPVLDTMI 634 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 LS P + + L+ +C+RYGI I +H AL DS + + V ++ Sbjct: 635 LS-NFLDGPEAGHSLDDICERYGIEI--TDRHTALGDSMVTAAVLLR 678 >gi|229151805|ref|ZP_04280004.1| DNA polymerase III alpha subunit [Bacillus cereus m1550] gi|228631618|gb|EEK88248.1| DNA polymerase III alpha subunit [Bacillus cereus m1550] Length = 318 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 71 RVSDAPTIEEVLPLFLAFLHA--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 129 AKKYMKQAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169 >gi|228953879|ref|ZP_04115918.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805847|gb|EEM52427.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 315 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166 >gi|229128882|ref|ZP_04257858.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4] gi|228654587|gb|EEL10449.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4] Length = 318 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 71 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++ + L +L + GI +S + + + Sbjct: 129 AKKYMKHATNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169 >gi|206969177|ref|ZP_03230132.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH1134] gi|229071110|ref|ZP_04204336.1| DNA polymerase III alpha subunit [Bacillus cereus F65185] gi|206736218|gb|EDZ53376.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH1134] gi|228712050|gb|EEL63999.1| DNA polymerase III alpha subunit [Bacillus cereus F65185] Length = 315 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166 >gi|254482913|ref|ZP_05096149.1| exonuclease, DNA polymerase III, epsilon subunit family [marine gamma proteobacterium HTCC2148] gi|214036785|gb|EEB77456.1| exonuclease, DNA polymerase III, epsilon subunit family [marine gamma proteobacterium HTCC2148] Length = 206 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 80/172 (46%), Gaps = 7/172 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV + T R FQ + P GR+ GIT+ Sbjct: 8 VVLDFETTGLSPGEGDRAIEIGAVRIESGKVTAR-FQELMNP-GRRVDSFIESFTGITNL 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D S + +F DF E N +AHNA FD F++AEL+RI L+ Sbjct: 66 MLADARPCSDVMRDFADFIGEDN--LVAHNASFDKRFLDAELERIALSY-TGQFSCSMLA 122 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R + + L +L + I H AL DS + + +++ M+ + Sbjct: 123 ARRIFQQAPDHKLGTLVEFMNIP-VEGVFHRALYDSEMTAKLWLAMLNDVRR 173 >gi|218231342|ref|YP_002368423.1| DNA polymerase III subunit epsilon [Bacillus cereus B4264] gi|229146178|ref|ZP_04274553.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24] gi|296504117|ref|YP_003665817.1| DNA polymerase III subunit epsilon TlpA [Bacillus thuringiensis BMB171] gi|218159299|gb|ACK59291.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus B4264] gi|228637237|gb|EEK93692.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24] gi|296325169|gb|ADH08097.1| DNA polymerase III subunit epsilon tlpA [Bacillus thuringiensis BMB171] Length = 315 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166 >gi|229825431|ref|ZP_04451500.1| hypothetical protein GCWU000182_00790 [Abiotrophia defectiva ATCC 49176] gi|229789994|gb|EEP26108.1| hypothetical protein GCWU000182_00790 [Abiotrophia defectiva ATCC 49176] Length = 223 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 4/133 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTG+ + D++IEI A+++ + F + P R A +++GITDE + Sbjct: 19 VFDLETTGVSPQTDKVIEISAIKVRNGQTVGE-FSSLVNP-MRGIPYGATRVNGITDEMV 76 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP F + +F DF + + HN + IDTL IA Sbjct: 77 ADKPVFEKVLGDFLDFVED--DILVGHNIHDFDMKFIHRDCEAFFRMFLGNDYIDTLPIA 134 Query: 131 RRKHPSSRNDLNS 143 R+ P + + Sbjct: 135 RKCLPQLGHHRLT 147 >gi|167470221|ref|ZP_02334925.1| DNA polymerase III, epsilon subunit [Yersinia pestis FV-1] Length = 143 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 8/132 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+I+ D ETTG++ + RIIEIG V +++ T R F V++ P R PEA + Sbjct: 7 RQILLDTETTGMNKLGVHYEGHRIIEIGTVAVINLPLTGRNFHVYVKP-ARLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI+DEFL DKP+F+ I EF DF + HNA FD+GF + E + + +D Sbjct: 66 HGISDEFLADKPTFADITPEFLDFIRGGE--LVIHNAAFDIGFKDYEFRMLQQDIPKTET 123 Query: 123 IIDTLSIARRKH 134 + Sbjct: 124 LCPISDNKEMPP 135 >gi|27367395|ref|NP_762922.1| DNA polymerase III subunit alpha [Vibrio vulnificus CMCP6] gi|27358964|gb|AAO07912.1| DNA polymerase III alpha subunit [Vibrio vulnificus CMCP6] Length = 204 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 9/177 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV+++D +FQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPNLGDRAIEIGAVKIVDGEVV-DSFQQLMNP-GFRVSSFIESYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L+ PS + + F +F +N IAHNA FD F++AEL+RIN D + + + Sbjct: 66 MLRSAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCDYSGEFACSLLVA 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + PS + K H AL D+ + + +++ M+ Sbjct: 124 RRLIQDAPSHKLGELVRYKNIDNDGI---FHRALADAQMTAKLWLLMVEELEHSGIA 177 >gi|118616866|ref|YP_905198.1| DNA polymerase [Mycobacterium ulcerans Agy99] gi|118568976|gb|ABL03727.1| DNA polymerase [Mycobacterium ulcerans Agy99] Length = 500 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 53/253 (20%), Positives = 99/253 (39%), Gaps = 24/253 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG ++ DR++E+G V L + + P+ A + HGI Sbjct: 98 FAVLDFETTGFAAEYDRVVEVGLVLLSAEGDIEDEWSTLINPHR---DVGATERHGIRAR 154 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127 + P+F +I ++AHN FD F+ AE + + T+ Sbjct: 155 DVLGAPAFEAIIPRLLRDLRG--RVFVAHNVNFDQRFLLAELRRAGVPLDNPWLTGLCTM 212 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV-GGSQINFGFK 186 A R P++ L C G+ H AL D+ + + ++ GS + + Sbjct: 213 RWAGRLLPAASRKLPDCCDAAGV--FLTDAHRALADARATASLLKYLIDHCGSPPPWAKE 270 Query: 187 TNEDRFFKEEKKTVPNISLLKR-------DKP-------LFTRITKEELDEHDKTIQTLG 232 + F+ + P + L+ R +P + R+ E+ + ++ L Sbjct: 271 IDGAEDFEWPQVAGPEVRLVTRAAWGAAPPRPPAGWLDRIVARMPHEDDPRVESYLEIL- 329 Query: 233 KNAIWDRYISSNQ 245 ++A+ D Y+S ++ Sbjct: 330 ESALLDCYLSCHE 342 >gi|194333813|ref|YP_002015673.1| DNA polymerase III subunit epsilon [Prosthecochloris aestuarii DSM 271] gi|194311631|gb|ACF46026.1| DNA polymerase III, epsilon subunit [Prosthecochloris aestuarii DSM 271] Length = 208 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 7/172 (4%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV + + +R FQ + P G + S GIT+E Sbjct: 11 VVLDFETTGLSPQYGDRAIEIGAVLVEEGRIVDR-FQKLMNP-GFRISSFIEAYTGITNE 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK + + ++F +F N AHNA FD F++ EL+R N+ + L Sbjct: 69 MLKGEACCEEVMAQFSEFIAGHNIV--AHNASFDKRFLDFELKRANRSY-EGVCCCSLLV 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R S + L +L G+ H AL D+ + + +++ M+ + Sbjct: 126 SRRIYQDSPNHKLQTLVSHAGVPTIGS-FHRALADAEMTAHLWLAMIDRIRK 176 >gi|229134413|ref|ZP_04263226.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196] gi|228649034|gb|EEL05056.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196] Length = 318 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + + I Sbjct: 71 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNNVIDTVFL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169 >gi|228928662|ref|ZP_04091698.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229123127|ref|ZP_04252334.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201] gi|228660421|gb|EEL16054.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201] gi|228830981|gb|EEM76582.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 315 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + L +L + G S H A D + VY K + T Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + + KRD Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207 >gi|225572667|ref|ZP_03781422.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM 10507] gi|225039967|gb|EEG50213.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM 10507] Length = 1464 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 73/199 (36%), Gaps = 6/199 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG + +IIEIGAV + D R F F+ P +L I D Sbjct: 440 FVVFDLETTGFSPMSCQIIEIGAVRVEDGKIVER-FSTFVNPK-VPIPFRIEQLTSINDS 497 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDTL 127 + D P + +F +F + A +AHNA FD+ F+ + + Sbjct: 498 MVMDAPVIEEVLPKFLEFCSG--AVMVAHNADFDMSFVEFNCDRLGIPHDFTYIDTVGMA 555 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + D + + HR+ A + + ++KM+ N Sbjct: 556 RFLLPSLNRFKLDTVAKALEIPLGHHHRAVDDAACTADIFVK-FVKMLADREIENVDVLN 614 Query: 188 NEDRFFKEEKKTVPNISLL 206 + + K +P + Sbjct: 615 CQGSVSENTVKKLPTYHAI 633 >gi|196034235|ref|ZP_03101645.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W] gi|228947225|ref|ZP_04109519.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195993309|gb|EDX57267.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W] gi|228812472|gb|EEM58799.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 315 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + L +L + G S H A D + VY K + T Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + + KRD Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207 >gi|163802995|ref|ZP_02196881.1| DNA polymerase III, alpha subunit [Vibrio sp. AND4] gi|159173169|gb|EDP57998.1| DNA polymerase III, alpha subunit [Vibrio sp. AND4] Length = 209 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 9/176 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV+++D +FQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPNMGDRAIEIGAVKIVDGEVV-DSFQQLMNP-GFRVSSFIEGYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L+ PS + + F +F +N IAHNA FD F++AEL+RIN + + + Sbjct: 66 MLRTAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINLGYSGEFACSLLVA 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + PS + K + H AL D+ + + +++ M+ Q+ Sbjct: 124 RRLIQDAPSHKLGELVRYKNI---ENDGVFHRALADAQVTARLWLLMVEELEQLGI 176 >gi|28900648|ref|NP_800303.1| hypothetical protein VPA0793 [Vibrio parahaemolyticus RIMD 2210633] gi|153836411|ref|ZP_01989078.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ3810] gi|28809028|dbj|BAC62136.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149750313|gb|EDM61058.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ3810] Length = 214 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 13/186 (6%) Query: 4 KNKMRK----IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 +N M + +V D ETTGL DR IEIGAV+L+D +FQ + P G + S Sbjct: 8 ENVMPQANSVVVLDFETTGLSPTLGDRAIEIGAVKLVDGEVV-DSFQQLMNP-GFRVSSF 65 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 GIT+ L+ PS + + F +F + +N IAHNA FD F++AEL+RIN Sbjct: 66 IENYTGITNNMLRTAPSCEEVMASFSEFIDGEN--LIAHNASFDKRFLDAELERINCGYS 123 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + + + PS + K + H AL D+ + + +++ M+ G Sbjct: 124 GEFACSLLVARRLIQDAPSHKLGELVRYKNI---DNDGVFHRALADAQMTAKLWLLMVEG 180 Query: 178 GSQINF 183 Sbjct: 181 LENSGI 186 >gi|218904738|ref|YP_002452572.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH820] gi|218538798|gb|ACK91196.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH820] Length = 315 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 76/205 (37%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + L +L + G S H A D + VY K + T Sbjct: 126 AKKYMKHAPNYKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + + KRD Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207 >gi|30021712|ref|NP_833343.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 14579] gi|29897267|gb|AAP10544.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579] Length = 315 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++ + L +L + GI +S + + + Sbjct: 126 AKKYMKHATNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166 >gi|84514691|ref|ZP_01002055.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella vestfoldensis SKA53] gi|84511742|gb|EAQ08195.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella vestfoldensis SKA53] Length = 469 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTG D +++IGA+ +++ + + + P GR + +H ITD Sbjct: 276 YVVFDTETTGFLPNKDEVVQIGALRVVNGQQAPGEVLDLLVNP-GRAIPASSTAVHRITD 334 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +KD P +F ++A +AHNA FD+ F + +I P L Sbjct: 335 AMVKDAPDMVHAGRKFHS--FARDAVLVAHNAPFDLSFFHRYAPKIGMKFDHPVLDTVLL 392 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 S A + + L+ L KR GI + + +H A+ D+ D++++M+ Sbjct: 393 S-AVLFGITEGHTLDELAKRLGIELLDKHRHTAIGDAIATRDIFLRMIPMLEARGL 447 >gi|229157184|ref|ZP_04285264.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342] gi|228626248|gb|EEK82995.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342] Length = 315 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D + + F F + +AHNA FD+ F+ + + ++ I Sbjct: 68 RVSDARTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLSLPEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + L +L + G S H A D + VY K + T Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + + KRD Sbjct: 183 VLDETAVYEAVKKILVRNKRDIEWV 207 >gi|302668622|ref|YP_003833070.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316] gi|302397586|gb|ADL36488.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316] Length = 1490 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 7/162 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL D+IIEIGAV++LD ++ F F+ P SP KL ITD+ Sbjct: 460 VVFDIETTGLSPTEDKIIEIGAVKMLDGVVVDK-FSEFVDPK-IPISPATTKLTTITDDM 517 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P ++ +F +F + + HN FD+ FI +R+ LS Sbjct: 518 VIGAPLIDAVVPKFVEFCGD--CVLVGHNVGFDISFIIENCRRLGIKKEFTCIDTMGLSR 575 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 A +++ L ++CK + + H A+ D+ ++++ Sbjct: 576 AFYPQ-QAKHSLEAVCKTLKVV--NEQHHRAISDAECTAEIF 614 >gi|126734517|ref|ZP_01750263.1| exonuclease, putative [Roseobacter sp. CCS2] gi|126715072|gb|EBA11937.1| exonuclease, putative [Roseobacter sp. CCS2] Length = 461 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 4/115 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGLD + D ++++GAV +++ + TF+ + P GR ++ K+HGI+D Sbjct: 273 FVVFDSETTGLDPQKDDVVQLGAVRIVNGRIIASETFEALVNP-GRPIPAQSTKVHGISD 331 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + + P F+ + F NA +AHNA FD+ F+N +D Sbjct: 332 DMVAGAPDFTVVRDNFQR--YAANAVLVAHNAPFDMAFLNRSDAIFQNPVMDTVH 384 >gi|90577496|ref|ZP_01233307.1| putative DNA polymerase III [Vibrio angustum S14] gi|90440582|gb|EAS65762.1| putative DNA polymerase III [Vibrio angustum S14] Length = 207 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 9/173 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L++ ++ FQ + P G + S GI++ Sbjct: 11 VVLDFETTGLSPNQGDRAIEIGAVKLVNGEVVDQ-FQQLMNP-GFRVSSFIEGYTGISNN 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L+ P + + F DF + N +AHNA FD F++AEL I + + + Sbjct: 69 MLRTAPPCNEVMDAFADFIGDAN--LVAHNASFDQRFLDAELADIGRYYTGTFTCSMLIA 126 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + P+ + K + H AL DS + + +++ M+ + Sbjct: 127 RRLYQHAPNHKLGTLVDFKHI---EHNGVFHRALADSEMTARLWLVMIEDIKR 176 >gi|297584076|ref|YP_003699856.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10] gi|297142533|gb|ADH99290.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10] Length = 1433 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 9/222 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + IIE+ AV++ +R F+ F P+ SP + L GITD+ Sbjct: 419 YVVFDVETTGLSAVYNTIIELAAVKVQGGEIIDR-FESFANPH-EPLSPTIIDLTGITDD 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P + +F + N +AHNA FD+ F++A Q+ D I Sbjct: 477 MVADAPEIHDVLKDFKAWC--GNDILVAHNAAFDMAFLDAGYQKAGMDKAANPVIDTLEM 534 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF---GF 185 LN+LCK++ I S H A+ D+ + KM+ + Sbjct: 535 GRMLYPTFKNYRLNTLCKKFNIE--LVSHHRAIYDAEATGHLLWKMVRDAVEKGITTHSA 592 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 ++ +K+ + ++ ++ + K H Sbjct: 593 LNDQSSPDDYKKQRPNHCTIYAKNAEGLKNLYKLVSKAHIDY 634 >gi|223937241|ref|ZP_03629147.1| DNA-directed DNA polymerase [bacterium Ellin514] gi|223894026|gb|EEF60481.1| DNA-directed DNA polymerase [bacterium Ellin514] Length = 199 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 2/167 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++FD+ETTGL S D II+I AV + + ++ +F ++ P GR S GIT+ Sbjct: 5 YVIFDLETTGLSSYQDEIIQIAAVRMSNGVVCSSDSFFSYVNP-GRSISSFITSYTGITN 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + D P ++ +F + + + + L Sbjct: 64 QDVGDAPRVGTVLKDFSRYAGKATLIAHNGHRFDMKFLHAGCSRNALPTRAVNYHDSIYL 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 S + L+S+ R I+ +H A D LL++ KM Sbjct: 124 SRLVWGKCPGGHGLDSVLNRLQISNHGVRRHDARGDVELLAEAVEKM 170 >gi|309805552|ref|ZP_07699597.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c] gi|308165203|gb|EFO67441.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c] Length = 758 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ + ++ + Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 458 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + Q+ HN +FD+GF+NA L+R N D + + Sbjct: 459 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 518 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ + F+ Sbjct: 519 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 573 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K K + I K Sbjct: 574 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 603 >gi|296269280|ref|YP_003651912.1| DNA polymerase III subunit epsilon [Thermobispora bispora DSM 43833] gi|296092067|gb|ADG88019.1| DNA polymerase III, epsilon subunit [Thermobispora bispora DSM 43833] Length = 574 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 63/174 (36%), Gaps = 4/174 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG D I EIGAV++ F + P GR P L GITD Sbjct: 20 FVVFDLETTGGSPAEDAITEIGAVKVCGGQVRGE-FATLIDP-GRPIPPFISVLTGITDA 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + F +F A +AHNA FD+GF+ A P + Sbjct: 78 MVVAAPKLPQVLPAFLEFIRG--ATLVAHNAPFDLGFLRAACAEYGYPPPANPVVDTADL 135 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R D + H AL D+ DV ++ + Sbjct: 136 ARRMLTRDETPDCKLATLARYFRSATEPCHRALADARATVDVLHGLLERAGALG 189 >gi|229168326|ref|ZP_04296051.1| DNA polymerase III alpha subunit [Bacillus cereus AH621] gi|228615152|gb|EEK72252.1| DNA polymerase III alpha subunit [Bacillus cereus AH621] Length = 318 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + + I Sbjct: 71 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNNVIDTVFL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169 >gi|323485384|ref|ZP_08090732.1| DNA polymerase III PolC-type [Clostridium symbiosum WAL-14163] gi|323401247|gb|EGA93597.1| DNA polymerase III PolC-type [Clostridium symbiosum WAL-14163] Length = 263 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50 + D+ETTGLD K+D+IIEIGAV ++D + TF F+ P Sbjct: 26 YVAIDLETTGLDPKHDKIIEIGAVLVIDG-EIKETFSTFVNP 66 >gi|229179896|ref|ZP_04307242.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W] gi|228603577|gb|EEK61052.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W] Length = 315 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLLEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166 >gi|257125285|ref|YP_003163399.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b] gi|257049224|gb|ACV38408.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b] Length = 1459 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 80/212 (37%), Gaps = 6/212 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI +VFDIETTG D ND+IIEIGAV++ F F+ P + Sbjct: 419 MIEDEI--YVVFDIETTGFDPFNDKIIEIGAVKMRGREVIGE-FSEFVNPE-IPIPQKIT 474 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L ITDE + + ++ F +F AHNAKFDVGFI + + Sbjct: 475 ELTTITDEMVANAEKIETVLPRFLEFCTGTTVV--AHNAKFDVGFIKQKTIDQGLEYSPS 532 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L+ N + +H + + ++ M++ Sbjct: 533 VIDTLPLARTLLPELRGYGLANLVKYFGITLETHHRAVDDAKATAEVFQKFLNMILSKGI 592 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 + + + + +T+ + L+K L Sbjct: 593 LKLIEINTDLQPNIQNSETLNTMILVKNQAGL 624 >gi|327441015|dbj|BAK17380.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046] Length = 1443 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 8/197 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTG + D IIE+ AV++ + TF+ F P+ RK + + ++L ITD+ Sbjct: 429 YIVFDVETTGFSNVYDTIIELAAVKIKNGQVI-DTFERFSNPH-RKLTAKIIELTHITDD 486 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + P S + EF DF + +AHNA FD+GF+ + + P Sbjct: 487 MLVNAPELSDVIREFHDFIGD--GVVVAHNAAFDLGFLYVAYKNAGIEVRHPGIDT---V 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GFKT 187 R + N I H A+ D+ ++++ ++ + + Sbjct: 542 ELSRLVNPGQKSHNLKTLTKKYNIELTQHHRAIYDTEATGELFLHLLKQAADLGIKNLIE 601 Query: 188 NEDRFFKEEKKTVPNIS 204 D EE S Sbjct: 602 MNDHVGGEEGYKQSRPS 618 >gi|289424040|ref|ZP_06425828.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptostreptococcus anaerobius 653-L] gi|289155559|gb|EFD04236.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptostreptococcus anaerobius 653-L] Length = 1440 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 7/187 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL +D + EIGAV++ + +F F+ P S + +L IT+E Sbjct: 426 FVVFDIETTGLSPHSDNLTEIGAVKVQNCEIV-DSFSTFVNPK-MDISYQIQELTRITNE 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD PS EF + +++ +AHNA FD GFI + Q++ + TL+ Sbjct: 484 MVKDAPSLEEALPEFLE--FAKDSVLVAHNADFDTGFIYQKCQQLGLEYNFEKVDTLTLA 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R L+ +CK G+ H A+ D+ ++V+IK + + ++ Sbjct: 542 -RIINTNLKRFSLDKVCKEMGVV--LAGHHRAVNDAQATAEVFIKYLEIFKKKGINKLSD 598 Query: 189 EDRFFKE 195 +R + + Sbjct: 599 VNRVYGK 605 >gi|183508608|ref|ZP_02958116.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182676065|gb|EDT87970.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 1442 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 4/205 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL D IIE GAV + + + Q F+ P ++ + L I+ E Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAVIMQNNKQIGEKIQFFVKP-IQQINENVTNLTNISQE 467 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + + + F++ +AHN + + IDTL Sbjct: 468 MVNNAIDEKTALLKIKEIFDD--HILVAHNGINFDINFINQRLLKWGLEPLKNPSIDTLM 525 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I+R +P + L ++CK+Y + + H A D+ +L+DV+ M +FG Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEIAHRADYDAIVLTDVFKVMKNNLFN-DFGITNL 584 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + K + + N S Sbjct: 585 NEINTKLQTTMLRNRSFGNWINLYI 609 >gi|58337539|ref|YP_194124.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM] gi|227904180|ref|ZP_04021985.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796] gi|58254856|gb|AAV43093.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM] gi|227868199|gb|EEJ75620.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796] Length = 1437 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 420 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH---HPLSEQTINLTSIT 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R + + Sbjct: 476 DEMVSAADDEAIVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRNGFSEITQPVVDTLEV 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +R+ L+SL K+Y +++ H H A D+ + K++ ++ Sbjct: 536 SRLLHPEQNRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMYKLLDAFNE 585 >gi|225849433|ref|YP_002729598.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium azorense Az-Fu1] gi|225644689|gb|ACN99739.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium azorense Az-Fu1] Length = 205 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 7/200 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTGL+ N IIEI A+ + ++ F + P+ KL GIT+ Sbjct: 11 FLIVDLETTGLNPVNSEIIEIAALRVEGGIVVDK-FHTLVKPSIGFIPTYITKLTGITNA 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + DKP+ +F +F +N+ +AHNA+FD+ F+N+ +I + + Sbjct: 70 LVVDKPTIEEVFPQFLK--FSENSIIVAHNAQFDMSFLNSVSYQITGRSIQNPVLCTQNL 127 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R L +L + I + + H AL D+ + +++ K++ F Sbjct: 128 AKRLFPDLPSKSLVNLAYHFNIPYNKK--HRALEDALVTYELFKKIIDYL--YMFNINKV 183 Query: 189 EDRFFKEEKKTVPNISLLKR 208 D K + S +R Sbjct: 184 MDLVRLSNGKDLNQTSKRRR 203 >gi|312135559|ref|YP_004002897.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis OL] gi|311775610|gb|ADQ05097.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis OL] Length = 1402 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 5/220 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG DS+ ++IIEIGAV++ + T R F F+ P G+ +L GI + Sbjct: 390 FVVVDVETTGFDSQKNKIIEIGAVKIENGQITER-FSTFVDPEGK-IPVRISELTGIYQD 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P EF + +AHNA+FD+GF+ Q LS Sbjct: 448 MVDKAPKLRDAILEFEK--FASGSVLVAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELS 505 Query: 129 IARRKHPSSRNDLN-SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 SS + + HR+ A + + + + ++ V G + + Sbjct: 506 RRLLTGLSSHKLNKVAEFLNVELRHHHRADSDAETTAGIFTSLMERLKVRGYKWLKELNS 565 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 E + K + ++L +++ + K H + Sbjct: 566 IESNAKADLKSHSYHATILVKNQQGLKNLYKLVSYSHLEY 605 >gi|255505426|ref|ZP_05346027.3| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469] gi|255267960|gb|EET61165.1| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469] Length = 1010 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 5/171 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG+ SK D +IEI AV++ T F + P GRK P A +++GITD+ Sbjct: 25 YVVFDLETTGISSKYDEVIEISAVKVEAGQVTGE-FSTLVNP-GRKIPPAASRVNGITDK 82 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + FS + +F+ F + N+ FD+ F+ + ++ + D + L Sbjct: 83 MVAGALPFSEVLGDFFAFAGDFVLVGHNINS-FDMKFLYRDAKKYFRKVPDNDYVDTLLL 141 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 S + L L + YGI+ + H AL D H+ VY K+ Sbjct: 142 ARAALPELSHHRLVDLAEHYGIS--AKGAHRALNDCHMNQKVYGKLAEEAE 190 >gi|170726548|ref|YP_001760574.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908] gi|169811895|gb|ACA86479.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908] Length = 205 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 69/172 (40%), Gaps = 7/172 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL + DR IEIGAV+L D TFQ + P R S Sbjct: 10 IVLDFETTGLSPNQGDRAIEIGAVKLEDGVVV-DTFQALMNPGFRITSFIESYTGITNQM 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P + + +AHNA FD F++AEL IN+ ++ Sbjct: 69 LSTAAPCEVVMDRFAD---FIHGSNLVAHNASFDQRFLDAELSLINRH--YTGEFACSML 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 IARR + + N + + H AL DS + + +++ M+ Sbjct: 124 IARRIYQEAPNHKLGGLVAFRQIENDGVFHRALADSEMTAKLWLTMIEDIQT 175 >gi|293115337|ref|ZP_05790986.2| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876] gi|292810483|gb|EFF69688.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876] Length = 1476 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 9/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ND IIEIGAV++ + +R F F+ P +L GI D Sbjct: 451 YVVFDLETTGLSPVNDSIIEIGAVKIQNKKVVDR-FSTFVNPK-IPIPYNIEQLTGIDDS 508 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D + +I EF F + A +AHNA+FDV FI + + I + + + Sbjct: 509 MVVDADTIENILPEFLKFCDG--AVMVAHNAEFDVTFIREKTKTILGKAFECTVVDTVSL 566 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L+ + K ++ H A+ D+ +D+++ ++ N N Sbjct: 567 ARALIPNLGKFTLDHVAKALNVS--LLHHHRAVDDAECCADIFLALVARLEMRNI---FN 621 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 D + E+ + I K + ++ Sbjct: 622 LDEINEIEEFNINAIKKAKTYHAIILADSE 651 >gi|163941216|ref|YP_001646100.1| DNA polymerase III subunit epsilon [Bacillus weihenstephanensis KBAB4] gi|163863413|gb|ABY44472.1| DNA polymerase III, epsilon subunit [Bacillus weihenstephanensis KBAB4] Length = 315 Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--KVIVAHNASFDMRFLKSNVNMLGLPEPKNNVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 126 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 166 >gi|313885310|ref|ZP_07819061.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus coleocola ACS-139-V-Col8] gi|312619416|gb|EFR30854.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus coleocola ACS-139-V-Col8] Length = 1435 Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 7/207 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL S D+IIE+ AV++ + TF+ F+ PN + S +L GIT+ Sbjct: 420 YVVFDVETTGLSSVYDKIIELAAVKMKEGQVI-DTFEAFINPN-QPLSSFTTELTGITNA 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P + +F+D QN +AHNA FD+GF+N +RI + I Sbjct: 478 MVEDAPQEDVVLKDFYD--FSQNTILVAHNASFDIGFLNKGYERIGIENTPLPVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L KRYG+ H A+ DS + K++ + +FG + + Sbjct: 536 SRMVNPHLKSHRLNTLAKRYGVN--LEQHHRAVYDSETTGYLMYKLL-DQALADFGMEYH 592 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTR 215 + + + L Sbjct: 593 HQLNNQLGQGDAFKQARPMHATLLVKE 619 >gi|194246813|ref|YP_002004452.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali] gi|193807170|emb|CAP18609.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali] Length = 1449 Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 5/177 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD ETTGL ND+IIEI A+++ + + FQ + P ++ +P L I+++ Sbjct: 409 YVIFDFETTGLSKINDQIIEIAAIKIQNNQIIDE-FQTLINPQ-QELTPFIENLTNISNQ 466 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK++P ++I +F F +N+ IAHN FD+GF+ + ++ L IDTL+ Sbjct: 467 DLKNQPLIATILPKFLKFC--ENSILIAHNISFDMGFLVNQTKKHLNLKL-NLPFIDTLN 523 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +AR S+ N IS + H A+ D + ++ +++ N F Sbjct: 524 LARYCLDSNLRYFNLKSLAKYFKISFENHHRAMSDVLITKTIFQQLLNYLLTKNIQF 580 >gi|309804220|ref|ZP_07698297.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d] gi|308163623|gb|EFO65893.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d] Length = 762 Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 9/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ + ++ + Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLLSD---TTINLTSIT 462 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + Q+ HN +FD+GF+NA L+R N D + + Sbjct: 463 DEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEV 522 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ + F+ Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFYER---FQEA 577 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K K + I K Sbjct: 578 NLGKMNDYAKFGQVYKRAKPNHMTVLAINK 607 >gi|260365523|ref|ZP_05778060.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus K5030] gi|260877586|ref|ZP_05889941.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AN-5034] gi|260895401|ref|ZP_05903897.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus Peru-466] gi|260901674|ref|ZP_05910069.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ4037] gi|308085274|gb|EFO34969.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus Peru-466] gi|308090931|gb|EFO40626.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AN-5034] gi|308108950|gb|EFO46490.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ4037] gi|308114429|gb|EFO51969.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus K5030] Length = 204 Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 9/176 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV+L+D +FQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPTLGDRAIEIGAVKLVDGEVV-DSFQQLMNP-GFRVSSFIENYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L+ PS + + F +F + +N IAHNA FD F++AEL+RIN + + + Sbjct: 66 MLRTAPSCEEVMASFSEFIDGEN--LIAHNASFDKRFLDAELERINCGYSGEFACSLLVA 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + PS + K + H AL D+ + + +++ M+ G Sbjct: 124 RRLIQDAPSHKLGELVRYKNI---DNDGVFHRALADAQMTAKLWLLMVEGLENSGI 176 >gi|322382351|ref|ZP_08056258.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153704|gb|EFX46079.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 1437 Score = 75.4 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL N++IIEI V++ D + R + F+ P+ K +L ITDE Sbjct: 423 YVVFDIETTGLSVINNKIIEIAGVKMKDGKEIGR-YTTFIDPH-EKIPYNIQQLTNITDE 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + +F +F + A +AHNA+FD+GFI A L+ I L + Sbjct: 481 MVQGAPDIAEELPKFVEFVGD--AVLVAHNARFDMGFIQANLKNIGMPELPNPSLDTLEL 538 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L ++ ++ + H A+ D+ L + ++ + N Sbjct: 539 ARLLFPSLKNHRLNTLADKFKVS--LENHHRAIDDTVALMHILNHLLQEAEEQNLTQLNR 596 Query: 189 EDRFFKEEKKTVPNIS 204 + ++ + Sbjct: 597 LNDHVGKDLRNTRPFH 612 >gi|154487101|ref|ZP_02028508.1| hypothetical protein BIFADO_00941 [Bifidobacterium adolescentis L2-32] gi|154084964|gb|EDN84009.1| hypothetical protein BIFADO_00941 [Bifidobacterium adolescentis L2-32] Length = 256 Score = 75.4 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 5/163 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ETTG +DRI+EIGA+ + + R + + P R E +L+G+TD L+ Sbjct: 89 IDLETTGFSPSDDRIVEIGAIRVRNGRPVKR-YSQLINPQ-RPLPEEITRLNGLTDADLR 146 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 ++P+ + +F F N FD F+ A R+ + I Sbjct: 147 NQPTVDQVLPDFIRFIGNDTLIGHNINE-FDAAFLLANTTRLGMRHIGNKTIDTLPLDRA 205 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++ L + +R+GI H A D+ + Y M Sbjct: 206 LYPEEPKHRLVDIIRRFGIA--QTESHRAADDALQTAQCYETM 246 >gi|295706248|ref|YP_003599323.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319] gi|294803907|gb|ADF40973.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319] Length = 1436 Score = 75.4 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 6/197 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + +R F+ F P+ S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKMKEGEIIDR-FERFANPH-HPLSATTIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P S + +F ++ + + +AHNA FD+GF+N LQ+I + I Sbjct: 479 MVQNAPEISEVLRDFHEWMGD--SILVAHNASFDMGFLNMGLQKIGLEKAANGVIDTLEL 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L K++ I H A+ D+ + KM+ + Sbjct: 537 GRFLYPHMKNHRLNTLAKKF--DIELVQHHRAIYDAETTGYLLNKMLKDAFEREITMHDR 594 Query: 189 EDRFFKEEKKTVPNISL 205 + + E Sbjct: 595 LNDYMGEGNAYQRARPY 611 >gi|294500902|ref|YP_003564602.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551] gi|294350839|gb|ADE71168.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551] Length = 1436 Score = 75.4 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 6/197 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + +R F+ F P+ S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKMKEGEIIDR-FERFANPH-HPLSATTIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P S + +F ++ + + +AHNA FD+GF+N LQ+I + I Sbjct: 479 MVQNAPEISEVLRDFHEWMGD--SILVAHNASFDMGFLNMGLQKIGLEKAANGVIDTLEL 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L K++ I H A+ D+ + KM+ + Sbjct: 537 GRFLYPHMKNHRLNTLAKKF--DIELVQHHRAIYDAETTGYLLNKMLKDAFEREITMHDR 594 Query: 189 EDRFFKEEKKTVPNISL 205 + + E Sbjct: 595 LNDYMGEGNAYQRARPY 611 >gi|257458230|ref|ZP_05623380.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580] gi|257444340|gb|EEV19433.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580] Length = 216 Score = 75.4 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 65/201 (32%), Positives = 94/201 (46%), Gaps = 6/201 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD ETTGLD RI+EIGAV+ D + V + P EA K++GITDE Sbjct: 16 FIAFDTETTGLDPAAGRIVEIGAVKF-DRRGIAARYNVLINPE-IPMPEEAGKVNGITDE 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKDKP +++F +F+DF +AHNA FD+ +INAEL+RI K PL + + Sbjct: 74 MLKDKPLIAAVFPDFFDFIGT--GVLVAHNAPFDINYINAELKRIGKSPLGNKVVDTRIF 131 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S L L ++GIT H A D+ + +++ K++ + N Sbjct: 132 AKEVFPGLSSYALQDLAVQFGIT--ALEAHRAEDDARVCMELFDKILNRFLKNNPELVEK 189 Query: 189 EDRFFKEEKKTVPNISLLKRD 209 P ++D Sbjct: 190 IRAETDAASLLAPEEEQKEKD 210 >gi|227872422|ref|ZP_03990766.1| possible DNA-directed DNA polymerase III alpha subunit [Oribacterium sinus F0268] gi|227841719|gb|EEJ52005.1| possible DNA-directed DNA polymerase III alpha subunit [Oribacterium sinus F0268] Length = 821 Score = 75.4 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 7/197 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG D + + IIEIGAV++ + +R VF+ P G +L I D Sbjct: 519 VVFDLETTGFDPRVNHIIEIGAVKIENGKIIDRM-DVFVNP-GVPIPFRITQLTSIDDSM 576 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D + +F D ++A +AHNA FD F++ + + +N P LS Sbjct: 577 VMDAKGIEEVLPQFLD--FAKDAILVAHNADFDYHFVSTKAKALNIPFSAPVIDTVALSR 634 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + + I H A+ D+ + +Y+K + Q Sbjct: 635 LLLPRLNRFKLDTVAKE---LKIELLHHHRAVDDAEATARIYLKELEILEQRGVSSLEEI 691 Query: 190 DRFFKEEKKTVPNISLL 206 D ++ V + Sbjct: 692 DSLEVDQVGKVRKLPSY 708 >gi|91225444|ref|ZP_01260566.1| hypothetical protein V12G01_08955 [Vibrio alginolyticus 12G01] gi|91189807|gb|EAS76080.1| hypothetical protein V12G01_08955 [Vibrio alginolyticus 12G01] Length = 204 Score = 75.4 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 9/177 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV+L++ +FQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPTLGDRAIEIGAVKLVNGEVV-DSFQQLMNP-GFRVSSFIENYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L+ PS + + F +F +N IAHNA FD F++AEL+RIN + + + Sbjct: 66 MLRSAPSCEEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCGYSGEFACSLLVA 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 ++ PS + K + H AL D+ + + +++ M+ G Sbjct: 124 RRLIQEAPSHKLGELVRYKNI---DNDGVFHRALADAQMTAKLWLLMVEGIENSGVE 177 >gi|229102245|ref|ZP_04232954.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-28] gi|228681146|gb|EEL35314.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-28] Length = 934 Score = 75.4 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPVFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|56419793|ref|YP_147111.1| DNA polymerase III PolC [Geobacillus kaustophilus HTA426] gi|56379635|dbj|BAD75543.1| DNA-directed DNA polymerase III alpha chain [Geobacillus kaustophilus HTA426] Length = 1444 Score = 75.4 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 6/190 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + IIE+ AV++ D +R F F P G S ++L GITDE Sbjct: 429 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANP-GHPLSVTTMELTGITDE 486 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + + F D +A +AHNA FD+GF+N L R+ + + I Sbjct: 487 MVKDAPKPDEVLARFVD--WAGDATLVAHNASFDIGFLNTGLARMGRGKIANPVIDTLEL 544 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK++ I H A+ D+ + ++++ + F Sbjct: 545 ARFLYPDLKNHRLNTLCKKF--DIELTQHHRAIYDAEATGHLLMRLLKEAEERGILFHDE 602 Query: 189 EDRFFKEEKK 198 + E Sbjct: 603 LNSRTHSEAS 612 >gi|282600891|ref|ZP_06257782.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM 15176] gi|282571272|gb|EFB76807.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM 15176] Length = 1347 Score = 75.4 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 5/198 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGLDS + + EIGAV + + + F F+ P G+ + ++L GI D Sbjct: 321 FVVFDTETTGLDSNVEALTEIGAVYVENGKINEEKKFCTFVNP-GKPIPQKVVELTGIND 379 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P+ F +F + +AHNA + D + IDTL Sbjct: 380 AMVADAPTPEEAIRAFKEFCGD--HVLVAHNAHSFDMLFIRKAGEKAGISFDENTYIDTL 437 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + P RN ++ + I + H A+ D+ L+ ++ M+ + + Sbjct: 438 PMGQALFPGLRNYKLDTINKH-LEIPPFNHHRAVDDAMALARIFEVMLNDLQEKDIPTVE 496 Query: 188 NEDRFFKEEKKTVPNISL 205 + K+ + Sbjct: 497 AINTGLGGNKEVLKKKYY 514 >gi|89901349|ref|YP_523820.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118] gi|89346086|gb|ABD70289.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118] Length = 476 Score = 75.4 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG + +DRI EI AV + + + R + + P G SP L GI++ Sbjct: 5 YVLLDLETTGGNPVHDRITEIAAVRIENGQEVAR-WSTLVNP-GCSISPFIQHLTGISNA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 ++ P F ++ + A +AHN +FD GF Sbjct: 63 MVRGAPGFETVAQHLLALLDG--AVLVAHNVRFDHGF 97 >gi|150390440|ref|YP_001320489.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens QYMF] gi|149950302|gb|ABR48830.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens QYMF] Length = 1432 Score = 75.4 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 7/172 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTGL ++NDRI EIGAV++ D ++ F + P + + ++L GITD+ Sbjct: 420 YIVFDIETTGLSNRNDRITEIGAVKIKDSQVIDK-FSALVNPEMK-IPSKIVELTGITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + DK + I F F + +AHN+ FD+GFI RI + + LS Sbjct: 478 MVVDKQTIDVILPGFLAFIGS--SPVVAHNSDFDMGFIRENANRIERTIENQVIDTLKLS 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + + + +S + H A+ D+ +++++K + Q Sbjct: 536 RILLPQLKRHRLNSIAKE---LNVSLENHHRAVDDAQATAEIFVKFIELLKQ 584 >gi|229096133|ref|ZP_04227106.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-29] gi|229115089|ref|ZP_04244499.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock1-3] gi|228668229|gb|EEL23661.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock1-3] gi|228687093|gb|EEL40998.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-29] Length = 934 Score = 75.4 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFVNPK-REIPVFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DESLVKQAPLFQDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKKHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 175 >gi|257869632|ref|ZP_05649285.1| DNA polymerase III [Enterococcus gallinarum EG2] gi|257803796|gb|EEV32618.1| DNA polymerase III [Enterococcus gallinarum EG2] Length = 920 Score = 75.4 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 6/169 (3%) Query: 7 MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+ I V D+ETTG D DRII+ G V + D NR F + P+ R+ S + L Sbjct: 1 MKPIYAVVDLETTGTDPAIDRIIQFGCVLIQDGQVINR-FATDINPD-RRISKQIQNLTH 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT++ +K P F + ++ ++AHN FD F++ EL R L+ I Sbjct: 59 ITNQQVKRAPYFEDVAHTIYNLL--TQTVFVAHNIYFDYHFLSQELIRCGMPSLEIPGID 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 S L L + G + + + + +YI+ Sbjct: 117 TVELAQVFLPTESSFRLGDLAESIGFVHENPHQADSDAEVTAALLLYIE 165 >gi|90408002|ref|ZP_01216174.1| putative DNA polymerase III [Psychromonas sp. CNPT3] gi|90310846|gb|EAS38959.1| putative DNA polymerase III [Psychromonas sp. CNPT3] Length = 210 Score = 75.4 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 7/173 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV +++ T++ FQ + P R NS GIT+ Sbjct: 10 VVLDFETTGLSPNQGDRAIEIGAVRIVNGEVTDQ-FQALMNPGIRVNS-FIEDYTGITNH 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+ S S + ++F DF + N +AHNA FD F++ EL I++ L Sbjct: 68 MLKEAASCSDVMAQFCDFIGDDN--LLAHNASFDKKFLDNELDEISRTY-QGEFTCSLLV 124 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R S + L +L K+ ++ H AL D+ + + +++ M+ SQ Sbjct: 125 SRRINIDSQSHSLGNLVKQLNLS-EEGGFHRALFDAQMTAKLWLHMLDNISQT 176 >gi|261419458|ref|YP_003253140.1| DNA polymerase III subunit chi [Geobacillus sp. Y412MC61] gi|319766273|ref|YP_004131774.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52] gi|261375915|gb|ACX78658.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61] gi|317111139|gb|ADU93631.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52] Length = 1444 Score = 75.4 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 6/190 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + IIE+ AV++ D +R F F P G S ++L GITDE Sbjct: 429 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANP-GHPLSVTTMELTGITDE 486 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + + F D +A +AHNA FD+GF+NA L R+ + + I Sbjct: 487 MVKDAPKPDEVLARFVD--WAGDATLVAHNASFDIGFLNAGLARMGRGKIANPVIDTLEL 544 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK++ I H A+ D+ + ++++ + F Sbjct: 545 ARFLYPDLKNHRLNTLCKKF--DIELTQHHRAIYDAEATGHLLMRLLKEAEERGILFHDE 602 Query: 189 EDRFFKEEKK 198 + E Sbjct: 603 LNSRTHSEAS 612 >gi|329847967|ref|ZP_08262995.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Asticcacaulis biprosthecum C19] gi|328843030|gb|EGF92599.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Asticcacaulis biprosthecum C19] Length = 708 Score = 75.4 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 2/125 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + NDR+ EI AV++ + + P R+ +L GIT+E Sbjct: 543 YVVVDVETTGGRAVNDRVTEIAAVKVRGGKIIAE-WSSLINPE-RRIPGYITQLTGITNE 600 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F+ I + F + N Sbjct: 601 MVAGAPKFAEIADDLAAFLSGAVFVAHNVNFDHSFIASEYRRLERRFHAPKLCTCAGMRK 660 Query: 129 IARRK 133 Sbjct: 661 YYPGH 665 >gi|196248636|ref|ZP_03147336.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. G11MC16] gi|196211512|gb|EDY06271.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. G11MC16] Length = 911 Score = 75.4 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 7/178 (3%) Query: 7 MRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR ++ D+ETTG + K DRII++G + D S R F F P + +L I Sbjct: 3 MRFVIIDLETTGNVPKKGDRIIQLGMAVVEDGSIVKR-FASFFNPE-QPIPLFIQQLTNI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ P F+ E AHN FD+ F+ AEL+R P I Sbjct: 61 DEQTVEGAPLFADKADEITAMMEGAYFV--AHNVDFDLPFLQAELERAGWPPFTGPTIDT 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K+ G+ H A D+ + + ++I ++ ++ Sbjct: 119 VELARIVLPTAESYKLGDLAKQLGLHHDRP--HQADSDAEVTAKLFIALLERLGRLPL 174 >gi|138895754|ref|YP_001126207.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Geobacillus thermodenitrificans NG80-2] gi|134267267|gb|ABO67462.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2] Length = 911 Score = 75.4 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 7/178 (3%) Query: 7 MRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR ++ D+ETTG + K DRII++G + D S R F F P + +L I Sbjct: 3 MRFVIIDLETTGNVPKKGDRIIQLGMAVVEDGSIVKR-FASFFNPE-QPIPLFIQQLTNI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ P F+ E AHN FD+ F+ AEL+R P I Sbjct: 61 DEQTVEGAPLFADKADEITAMMEGAYFV--AHNVDFDLPFLQAELERAGWPPFTGPTIDT 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K+ G+ H A D+ + + ++I ++ ++ Sbjct: 119 VELARIVLPTAESYKLGDLAKQLGLHHDRP--HQADSDAEVTAKLFIALLERLGRLPL 174 >gi|13357937|ref|NP_078211.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762156|ref|YP_001752460.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|13959349|sp|Q9PQB4|DPO3_UREPA RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|11279168|pir||C82898 DNA polymerase III alpha chain 1 UU377 [imported] - Ureaplasma urealyticum gi|6899360|gb|AAF30786.1|AE002135_2 DNA polymerase III alpha chain 1 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827733|gb|ACA32995.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 1442 Score = 75.4 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 4/205 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL D IIE GAV + + + Q F+ P ++ + L I+ E Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAVIMQNNKQIGEKIQFFIKP-IQQINENVTNLTNISQE 467 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + + + F++ +AHN + + IDTL Sbjct: 468 MVNNAIDEKTALLKIKEIFDD--HILVAHNGINFDINFINQRLLKWGLEPLKNPSIDTLM 525 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I+R +P + L ++CK+Y + + S H A D+ +L+DV+ M +FG Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDESAHRADYDAIVLADVFKVMKNNLFN-DFGITNL 584 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + K + + N S Sbjct: 585 SEINTKLQTTMLKNRSFGNWINLYI 609 >gi|134098272|ref|YP_001103933.1| hypothetical protein SACE_1689 [Saccharopolyspora erythraea NRRL 2338] gi|133910895|emb|CAM01008.1| DNA polymerase III, epsilon subunit [Saccharopolyspora erythraea NRRL 2338] Length = 572 Score = 75.4 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 4/174 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + D + EIGAV++ FQ + P R P + + GIT+ Sbjct: 25 FVVVDLETTGGSNAQDAVTEIGAVKVRGGEVVGE-FQTLVDPE-RDIPPSVVTITGITEA 82 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P S+ F +F + +AHNA FD GF+ A +R+ P + Sbjct: 83 MVRDAPRLDSVLPAFLEFCRG--SVLVAHNAPFDTGFLRAGCERLGLRWPKPKVVCTVRL 140 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R + + H AL D+ DV ++ I Sbjct: 141 ARRVLTRDETPNYRLGTLAGVLGARTEPVHRALDDARATVDVLHALLERLGPIG 194 >gi|30263558|ref|NP_845935.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Ames] gi|47528957|ref|YP_020306.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. 'Ames Ancestor'] gi|49186408|ref|YP_029660.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Sterne] gi|65320888|ref|ZP_00393847.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Bacillus anthracis str. A2012] gi|165871011|ref|ZP_02215662.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0488] gi|167636474|ref|ZP_02394772.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0442] gi|167640607|ref|ZP_02398869.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0193] gi|170688408|ref|ZP_02879616.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0465] gi|170708125|ref|ZP_02898572.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0389] gi|177652488|ref|ZP_02934955.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0174] gi|190565123|ref|ZP_03018044.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis Tsiankovskii-I] gi|229603113|ref|YP_002867802.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0248] gi|254686178|ref|ZP_05150037.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. CNEVA-9066] gi|254726056|ref|ZP_05187838.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. A1055] gi|254738651|ref|ZP_05196354.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Western North America USA6153] gi|254744791|ref|ZP_05202469.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Kruger B] gi|254752968|ref|ZP_05205004.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Vollum] gi|254759240|ref|ZP_05211266.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Australia 94] gi|30258193|gb|AAP27421.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. Ames] gi|47504105|gb|AAT32781.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49180335|gb|AAT55711.1| DNA polymerase III, epsilon subunit, putative [Bacillus anthracis str. Sterne] gi|164713222|gb|EDR18748.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0488] gi|167511475|gb|EDR86859.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0193] gi|167528133|gb|EDR90925.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0442] gi|170126933|gb|EDS95813.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0389] gi|170667578|gb|EDT18333.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0465] gi|172082162|gb|EDT67229.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0174] gi|190564440|gb|EDV18404.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis Tsiankovskii-I] gi|229267521|gb|ACQ49158.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0248] Length = 315 Score = 75.4 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R + L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRIMSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + L +L + G S H A D + VY K + T Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + + KRD Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207 >gi|227813558|ref|YP_002813567.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. CDC 684] gi|227004983|gb|ACP14726.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. CDC 684] Length = 315 Score = 75.4 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R + L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRIMSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + L +L + G S H A D + VY K + T Sbjct: 126 AKKYMKHAPNHKLETLKRMLG---IRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSNTE 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + + KRD Sbjct: 183 VLDETAVYEAVKEILVRNKRDIEWI 207 >gi|328948895|ref|YP_004366232.1| DNA polymerase III subunit epsilon [Treponema succinifaciens DSM 2489] gi|328449219|gb|AEB14935.1| DNA polymerase III, epsilon subunit [Treponema succinifaciens DSM 2489] Length = 216 Score = 75.0 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 7/184 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD ETTGL ++ + IIEIGAV+ F + + P + L ITD+ Sbjct: 22 FVAFDTETTGLKAEKEFIIEIGAVKFNCDGIIGEPFDILIKPP-IELPQFIKDLTHITDK 80 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P +F +F + +AHNA+FD+GFIN+EL+R + L I + Sbjct: 81 MISCCPCAKEAVPQFLNFVGGKETVLVAHNAQFDLGFINSELKRFSHPELPNVCIDTLNA 140 Query: 129 IARRKHPSSRNDLNSLCKRY----GITISHRSKHGALLDSHLLSDVYIKMMV--GGSQIN 182 + K I ++ H A D+ L +++ +++ Q N Sbjct: 141 SRWAYPDFIKEQEKGQYKLQSLAKRFGIEAKAAHRANDDARLCMEIFKRIISDTMDKQKN 200 Query: 183 FGFK 186 F Sbjct: 201 FSID 204 >gi|120598713|ref|YP_963287.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1] gi|120558806|gb|ABM24733.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1] Length = 212 Score = 75.0 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 7/172 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL + R IEIGAV + + T R F + P R +S Sbjct: 14 VVLDFETSGLSPNQGARAIEIGAVLIENGVITQR-FSELMGPGFRISSFIEDYTGISNQM 72 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P + + F DF + + +AHNA FD F++AE I+ + + +L Sbjct: 73 LRNAAPC-HEVMARFADFIGDNH--LVAHNAAFDQRFLDAEFAHIHHE--YQGQFACSLL 127 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +ARR +P + N + RY ++ + H AL D+ + +++ M+ + Sbjct: 128 LARRLYPLASNHQLATLVRYKQLPNNGTFHRALADAEMTGHLWLAMLADLQR 179 >gi|237732820|ref|ZP_04563301.1| DNA polymerase III subunit epsilon [Mollicutes bacterium D7] gi|229384061|gb|EEO34152.1| DNA polymerase III subunit epsilon [Coprobacillus sp. D7] Length = 224 Score = 75.0 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 59/186 (31%), Gaps = 12/186 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD- 67 +VFD+ETTG + K DRIIEIGA+++ + +R F P Sbjct: 41 YVVFDLETTGFNKKEDRIIEIGAIKVKNGRVVDR-FSTLCAPIKGGKPMYISAKITEVTG 99 Query: 68 -------EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + + + + + + + F + Sbjct: 100 IKNVDLLNQIPESEAVKNFMCWLGESKISVAHNGLKFDIPFLKEACKRSNVEFKFTHILD 159 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + ++ N +L + +G+ H A+ D L ++ K+ Sbjct: 160 TMLLSKALNYVNNGNIPNNKQETLARYFGVDY---QAHRAVNDCEALLKIFDKLKNDAKN 216 Query: 181 INFGFK 186 INF K Sbjct: 217 INFSLK 222 >gi|260426760|ref|ZP_05780739.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45] gi|260421252|gb|EEX14503.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45] Length = 468 Score = 75.0 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 5/166 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69 VFD ETTGL D +++IGAV +L+ + + P G + ++H +TD Sbjct: 278 VFDTETTGLLPHKDEVVQIGAVRVLNGRIVPGEVLDLLVDP-GIPIPASSSRVHKVTDAM 336 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + KP F + + +AHNA FD+ F+ R+ + P LS Sbjct: 337 VAGKPDIGEAGRRFHR--FAKGSVIVAHNAPFDMAFLRRHRDRMGVEWDHPILDTVLLS- 393 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A S + L++LC+R G+ I +H AL D++ + V + M+ Sbjct: 394 AVLFGASETHTLDALCQRLGVEIPQALRHTALGDANATAQVLVMML 439 >gi|114319829|ref|YP_741512.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226223|gb|ABI56022.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] Length = 719 Score = 75.0 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 7/175 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL + D II IGAV L++ + F+ + P R A + HGI++ Sbjct: 525 VVFDTETTGLSPARGDEIIAIGAVRLVNGRVLQDEYFEQLVKP-CRAIPDSATRFHGISN 583 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + P + F F E + +AHNA FD+GF+ R P L Sbjct: 584 EDVARAPEIGPVLRAFSRFIGE-ESVLVAHNAAFDMGFLRRAQARAGLAFPQPVLDTLLL 642 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 S+ H + + + + +H AL D+ + +DV+ +M+ + Sbjct: 643 SVYLHDHSPDHTLEGVAER---LGVEVQKRHSALADARVTADVFARMIPLLRERG 694 >gi|24373798|ref|NP_717841.1| DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1] gi|24348190|gb|AAN55285.1|AE015666_9 DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1] Length = 212 Score = 75.0 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 7/172 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL + R IEIGAV + T R F + P R N+ Sbjct: 14 VVLDFETSGLSPNQGARAIEIGAVLIEQGQITTR-FSELMNPGFRINAFIEDYTGISNQM 72 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P + + + F +F + + +AHNA FD F++AE I L Sbjct: 73 LAHAAPC-AEVMARFAEFIGKHH--LVAHNAAFDQRFLDAEFAHIGHQYSGQFGCSLLL- 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ARR +P + N + R+ ++ + H AL D+ + ++++M+ Q Sbjct: 129 -ARRLYPEAINHQLATLVRHKQLPNNGTFHRALADAEMTGHLWLRMLADLKQ 179 >gi|256750786|ref|ZP_05491671.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus CCSD1] gi|256750369|gb|EEU63388.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus CCSD1] Length = 1407 Score = 75.0 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 7/196 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTGL + ND IIEIGAV++ + TF+ F+ P S KL GI + + Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKEGKII-DTFETFVNPK-IPISSFITKLTGIDESMV 453 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD PS I +F + N+ +AHNA FDV FI ++ ++ N + + LS Sbjct: 454 KDAPSIEEILPKFLE--FASNSVLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRH 511 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 K + + + H A+ D+ ++++IK + ++ + + Sbjct: 512 LYKDLKNYKLDT---LAEHLQVKLEHHHRAVDDAMATAEIFIKTIDRLKELGVEKVKDIN 568 Query: 191 RFFKEEKKTVPNISLL 206 KE + + + + Sbjct: 569 AILKESEVDIRKLPVY 584 >gi|315038577|ref|YP_004032145.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] gi|312276710|gb|ADQ59350.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] Length = 1435 Score = 75.0 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 418 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH---HPLSEQTINLTSIT 473 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R + + Sbjct: 474 DEMVSAADDEDVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLSEITQPVVDTLEV 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y +++ H H A D+ + K++ + N Sbjct: 534 SRLLHPEQNRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMYKLLDAFKKKYNEDNLN 591 Query: 189 EDRFFKEEKKTVPNISLL 206 + + Sbjct: 592 NLNGYAAHGEVYKRARPS 609 >gi|163939458|ref|YP_001644342.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus weihenstephanensis KBAB4] gi|163861655|gb|ABY42714.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus weihenstephanensis KBAB4] Length = 934 Score = 75.0 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 84/218 (38%), Gaps = 10/218 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPLFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DENLVKQAPLFRDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEVHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLSEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 T + + + +L + KEE +E Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKMMHGKEEAEE 213 >gi|325957051|ref|YP_004292463.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC] gi|325333616|gb|ADZ07524.1| DNA polymerase III, alpha subunit [Lactobacillus acidophilus 30SC] gi|327183774|gb|AEA32221.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1118] Length = 1435 Score = 75.0 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 418 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH---HPLSEQTINLTSIT 473 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R + + Sbjct: 474 DEMVSAADDEDVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLSEITQPVVDTLEV 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y +++ H H A D+ + K++ + N Sbjct: 534 SRLLHPEQNRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMYKLLDAFKKKYNEDNLN 591 Query: 189 EDRFFKEEKKTVPNISLL 206 + + Sbjct: 592 NLNGYAAHGEVYKRARPS 609 >gi|312883799|ref|ZP_07743518.1| DNA polymerase III, alpha subunit [Vibrio caribbenthicus ATCC BAA-2122] gi|309368548|gb|EFP96081.1| DNA polymerase III, alpha subunit [Vibrio caribbenthicus ATCC BAA-2122] Length = 204 Score = 75.0 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 9/176 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV+L+D +FQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPNMGDRAIEIGAVKLVDGQVV-DSFQRLMNP-GFRVSTFIEGYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L+ PS + + F F +N IAHNA FD F++AEL+R+N + + + Sbjct: 66 MLRTAPSCDEVMTSFSQFIAGEN--LIAHNASFDKRFLDAELERVNCGYSGEFACSLLVA 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + PS + + + H AL D+ + + +++ M+ Q Sbjct: 124 RRLIQDAPSHKLGELVRHRNI---ENDGVFHRALADAQVTAKLWLLMVEELEQYGI 176 >gi|229010951|ref|ZP_04168147.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM 2048] gi|229132450|ref|ZP_04261304.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST196] gi|228651156|gb|EEL07137.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST196] gi|228750351|gb|EEM00181.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM 2048] Length = 934 Score = 75.0 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 84/218 (38%), Gaps = 10/218 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPLFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DENLVKQAPLFRDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEVHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLSEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 T + + + +L + KEE +E Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKMMHGKEEAEE 213 >gi|168187912|ref|ZP_02622547.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum C str. Eklund] gi|169294244|gb|EDS76377.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum C str. Eklund] Length = 1441 Score = 75.0 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 66/180 (36%), Gaps = 4/180 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG S+ D+IIE GAV++ + + +F F+ P + +L IT+E Sbjct: 428 FVVFDLETTGFSSQYDKIIEFGAVKIKNGNII-DSFSAFVNPEMK-IPYRITELTSITNE 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD + + +F F + N N I + I Sbjct: 486 DVKDAETIDKVLPKFMKFAEDTVLVAHNSNFDMSFIRKNCNDLNIECNY-TVMDTIPLAK 544 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + + + HR+ A +L + K++ + N Sbjct: 545 FLFPELKRYKLNTIAKHLGVSLENHHRAVDDAKATGDILVHCF-KLLKEMEITSLNDLNN 603 >gi|229058278|ref|ZP_04196665.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH603] gi|228720049|gb|EEL71635.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH603] Length = 934 Score = 75.0 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPLFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DEDLVKQAPLFRDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEVHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLSEIEKLPL 175 >gi|240047815|ref|YP_002961203.1| DNA polymerase III PolC [Mycoplasma conjunctivae HRC/581] gi|239985387|emb|CAT05400.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae] Length = 1455 Score = 75.0 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 3/170 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFD+ETTGL + IIE GAV + D +T + Q F+ E K+ IT Sbjct: 400 RYVVFDLETTGLSPVYNEIIEFGAVVIQDGIQT-ESHQFFVK-AKEPIPTEITKITNITQ 457 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + ++ ++ + ++ +AHNAKFD F+ ++ +D I Sbjct: 458 EMVDEQGIEATEAFYRISKIIK-DSILVAHNAKFDFNFLAELFKKEASMTIDQPIIDTLQ 516 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + L ++ K G+ H A D+ +LS V++ + Sbjct: 517 VSRFLNPSQKSHSLKNVSKLIGLYYDETVAHRADYDAEILSKVWLNFLTQ 566 >gi|42560899|ref|NP_975350.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492396|emb|CAE76992.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320644|gb|ADK69287.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 1482 Score = 75.0 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 4/202 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FD+ETTGL + D IIE GA+E + + + + P + KL IT+ Sbjct: 434 RMVFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDILIKPKTKLK-AFTQKLTNITE 492 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L+DKPS F + + + A +AHNA FD F++ +++ L+ + I Sbjct: 493 KMLEDKPSIEQAFKQINEIIKD--AILVAHNANFDFTFLSYWSEKLGYSKLENTIIDTLT 550 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + L SL KR I+ H D+ +L+D+Y +M+ + T Sbjct: 551 ISRIIYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERMLDETRK-KIKIIT 609 Query: 188 NEDRFFKEEKKTVPNISLLKRD 209 + D + N++ K Sbjct: 610 DSDWNKIDPINYADNLNYYKNK 631 >gi|328470587|gb|EGF41498.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus 10329] Length = 204 Score = 75.0 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 9/176 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV+L+D +FQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPTLGDRAIEIGAVKLVDGEVV-DSFQQLMNP-GFRVSSFIENYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L+ PS + + F +F +N IAHNA FD F++AEL+RIN + + + Sbjct: 66 MLRIAPSCEEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCGYSGEFACSLLVA 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + PS + K H AL D+ + + +++ M+ G Sbjct: 124 RRLIQDAPSHKLGELVRYKNIDNDGI---FHRALADAQMTAKLWLLMVEGLENSGI 176 >gi|281202348|gb|EFA76553.1| DNA polymerase III [Polysphondylium pallidum PN500] Length = 725 Score = 75.0 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 5/169 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FD+ET+G D IIEIGAVEL++ +T TFQ + P + + Sbjct: 320 RVVCFDLETSGFGPD-DSIIEIGAVELINGCRTGLTFQSYAKPKTQIHPAAEQIHQLSNF 378 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 P + S ++ +AHN FD + EL R + T+ Sbjct: 379 LLQDAPPIEFVLSSFMD---FVGDSILVAHNLAFDRRMLIQELVRSKTPFDINHKCFCTM 435 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL-LDSHLLSDVYIKMM 175 R+ + S L+S+ ++ I + +DS +L+ VY ++ Sbjct: 436 RYFRKMYKDSNYSLDSISQQLKINKLLLRRTHGALVDSEILAIVYKHLL 484 >gi|330999159|ref|ZP_08322878.1| putative DNA polymerase III, epsilon subunit [Parasutterella excrementihominis YIT 11859] gi|329575359|gb|EGG56903.1| putative DNA polymerase III, epsilon subunit [Parasutterella excrementihominis YIT 11859] Length = 248 Score = 75.0 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 16/218 (7%) Query: 22 KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFS 81 + DRIIEIG VEL ++ T++ F ++ P R+ E +++H IT+EFL KP F+ I Sbjct: 5 EGDRIIEIGCVELGEHGLTDKNFHEYIDPE-RQMEAEVIRVHKITNEFLVGKPKFADIAD 63 Query: 82 EFWDFFNEQNAEWIA--HNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN 139 +F +F + F + + ++ IID++ +A+ P N Sbjct: 64 KFIEFVQGARLIIHNAQFDIGFLNEELRKLGKPSMEEICGKDNIIDSMELAKAAFPQMHN 123 Query: 140 DLNSLCKR--YGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEK 197 L++LCKR T + HGALLD+ LL VY+ + + Sbjct: 124 SLDALCKRLEIDTTRRVKEGHGALLDAELLGQVYLVLKQQQGILEIDAAPVSADVHDISD 183 Query: 198 KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 +P R T+E+L E+++ ++ + K A Sbjct: 184 VELP-----------VIRATEEDLSENERVLEMVRKAA 210 >gi|227892603|ref|ZP_04010408.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047] gi|227865588|gb|EEJ73009.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047] Length = 1435 Score = 75.0 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 418 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH---HPLSEQTINLTSIT 473 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R + + Sbjct: 474 DEMVSAADDEAVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTLEV 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y +++ H H A D+ + K++ + N Sbjct: 534 SRLLHPEQNRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMYKLLDAFKKKYNEDNLN 591 Query: 189 EDRFFKEEKKTVPNISLL 206 + + Sbjct: 592 NLNGYAAHGEVYKRARPS 609 >gi|297625374|ref|YP_003687137.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921139|emb|CBL55686.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 203 Score = 75.0 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + DRIIEIG V L + + + P + + A ++H IT Sbjct: 4 YAVLDLETTGFSPARGDRIIEIGLVRLDPQGHVDDEWSTLVNP---RRTVRATRVHHITS 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDT 126 + P+ + + D + +AHN+ FDVGF+ AEL+ + T Sbjct: 61 ADVAAAPTMAELAPGLVDKLRD--RVVVAHNSSFDVGFLTAELRTAGMTIPPEPIPSVCT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + + R + L C+ G++ R H AL D+ ++++ + Sbjct: 119 MRQSTRFLHARSRRLVDCCEAAGVS--LRDAHSALGDARATAELFGHYLRAAG 169 >gi|269968192|ref|ZP_06182223.1| hypothetical protein VMC_36530 [Vibrio alginolyticus 40B] gi|269827190|gb|EEZ81493.1| hypothetical protein VMC_36530 [Vibrio alginolyticus 40B] Length = 204 Score = 75.0 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 9/177 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV+L++ +FQ + P G + S IT+ Sbjct: 8 VVLDFETTGLSPTLGDRAIEIGAVKLVNGEVV-DSFQQLMNP-GFRVSSFIENYTSITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127 L+ PS + + F +F +N +AHNA FD F++AE + + + + Sbjct: 66 MLRSAPSCEEVMASFSEFIAGEN--LVAHNASFDKRFLDAELERINCGSSGEFACSLLVA 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 ++ PS + K + H AL D+ + + +++ M+ G Sbjct: 124 RRLIQEAPSHKLGELVRYKNI---DNDGVFHRALADAQMTAKLWLLMVEGIENSGVE 177 >gi|310827165|ref|YP_003959522.1| DNA polymerase III PolC [Eubacterium limosum KIST612] gi|308738899|gb|ADO36559.1| DNA polymerase III PolC [Eubacterium limosum KIST612] Length = 1369 Score = 75.0 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 5/220 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL D IIEI AV++ + TF + P+ R P L GIT++ Sbjct: 354 FVFFDLETTGLIPGKDNIIEIAAVKIKNKHIV-DTFSKIVNPH-RPIPPFITNLTGITNQ 411 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127 ++D + F +F + +AHNAKFD+GF+ ++ + + Sbjct: 412 MVEDGEEEEAAVKAFCEFCGD--LILVAHNAKFDMGFMEIALNAHHLENNITYIDTLAMS 469 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + + HR+ ++ + + + + G Sbjct: 470 RTLIPTINKHNLKKLASYFKVDMGHHHRALDDSVCSAKIFVKLMELAQKRDVEEVAGLNG 529 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 D + +I + +++ + K + H Sbjct: 530 LMDVEQIIKSGDTYHIIIYAKNQAGLKDLYKLVSEAHINY 569 >gi|229166488|ref|ZP_04294244.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH621] gi|228617062|gb|EEK74131.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH621] Length = 934 Score = 75.0 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 85/218 (38%), Gaps = 10/218 (4%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPLFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ +K P F + + A ++AHN FD F+N EL++ + +I Sbjct: 62 DEDLVKQAPLFRDVAPMIVELLQG--AAFVAHNVHFDWNFLNEELRQAGYTEVHCPKIDT 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L K++ + H A D+ ++++++ + Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLSEIE--KLPL 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 T + + + +L + KEE +E Sbjct: 176 VTLQSLYELSDVFQSDIADVLSENILKKMMHGKEEAEE 213 >gi|256851162|ref|ZP_05556551.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN] gi|260660586|ref|ZP_05861501.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN] gi|282934628|ref|ZP_06339871.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 208-1] gi|297206027|ref|ZP_06923422.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16] gi|256616224|gb|EEU21412.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN] gi|260548308|gb|EEX24283.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN] gi|281301203|gb|EFA93504.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 208-1] gi|297149153|gb|EFH29451.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16] Length = 936 Score = 75.0 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 4/222 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG DRII+ G + + +T+ + P L GI Sbjct: 10 FAVVDLETTGTRRGQDRIIQFGCAIIKNRQII-KTYSFLINPK-ADIPQAVQNLTGIKPA 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++P F + ++ D + N K ++ Sbjct: 68 DVVNQPVFKNFATQIEDILQDTVFVAHNINFDLPFLNAELAANGFPKLRNRAIDTVELSK 127 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 IA PS R + T H++ A + LL + K+ + Sbjct: 128 IAFPTLPSYRLSDLTHSLNLKHTNPHQADSDAYATASLLLKILDKLESLPQSTLNTLTSL 187 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 ++ + IS R + ++K+ L H ++ Sbjct: 188 SKGLLRDTQFIFKEISEFTRQEKRP--LSKKYLQIHSLVLKK 227 >gi|325001618|ref|ZP_08122730.1| hypothetical protein PseP1_22781 [Pseudonocardia sp. P1] Length = 403 Score = 75.0 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 69/208 (33%), Gaps = 4/208 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + D I E+GAV + + P R + +L GIT+ L Sbjct: 27 VVDLETTGGSHRADAITEVGAVSVRGGESIGE-LSTLVDPGTR-VPADVTRLTGITNGML 84 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P ++ D + +AHNA FD GF+ A +R + P + Sbjct: 85 AGAPPLGAVLPPVLDLLRG--SVLVAHNAPFDTGFLRAACERHERPWPSPPVLCTARLAR 142 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 S + H AL D+ +V ++ + Sbjct: 143 AVLPRSECPSVRLGALAAHFGCRTTPDHRALTDARATVEVLHHLLERIGNLGVQSLEELL 202 Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K+ P + +R ++ Sbjct: 203 QLVKDRAPHRPTTAQRQRRHLAKRVPSE 230 >gi|167040287|ref|YP_001663272.1| DNA polymerase III PolC [Thermoanaerobacter sp. X514] gi|300914371|ref|ZP_07131687.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561] gi|307724393|ref|YP_003904144.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513] gi|166854527|gb|ABY92936.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514] gi|300889306|gb|EFK84452.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561] gi|307581454|gb|ADN54853.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513] Length = 1407 Score = 75.0 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 7/196 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTGL + ND IIEIGAV++ + TF+ F+ P S KL GI + + Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKEGKII-DTFETFVNPK-IPISSFITKLTGIDESMV 453 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD PS I +F + N+ +AHNA FDV FI ++ ++ N + + LS Sbjct: 454 KDAPSIEEILPKFLE--FASNSVLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRH 511 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 K + + + H A+ D+ ++++IK + ++ + + Sbjct: 512 LYKDLKNYKLDT---LAEHLQVKLEHHHRAVDDAMATAEIFIKTIDRLKELGVEKVKDIN 568 Query: 191 RFFKEEKKTVPNISLL 206 KE + + + + Sbjct: 569 AILKESEVDIRKLPVY 584 >gi|152975987|ref|YP_001375504.1| DNA polymerase III subunit epsilon [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024739|gb|ABS22509.1| DNA polymerase III, epsilon subunit [Bacillus cytotoxicus NVH 391-98] Length = 299 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 4/173 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D ETTG NDRII++ AV ++ F F+ P R L GIT+ Sbjct: 9 NYVVIDFETTGFHPYNDRIIQVAAVRYRNHEL-ADQFVSFVNPE-RSIPSRITSLTGITN 66 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P+ + F F AHNA FD+ F+ + + R + I L Sbjct: 67 YRVSDAPTVQEVLPLFLAFLGNDTIV--AHNASFDMRFLKSNMSRFQLGEPNNKVIDTVL 124 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + + L +L + GI +S + + + M G + Sbjct: 125 LAKKYMKHAPNFKLETLKRMLGIRLSSHNALDDCITCAAVYQQCANMQGDGRK 177 >gi|266619529|ref|ZP_06112464.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] gi|288868940|gb|EFD01239.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] Length = 235 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGLD K D+IIEIGAV + T F+ F+ P R + L GI D+ Sbjct: 5 YVAVDLETTGLDPKRDKIIEIGAVRIEAGEITAE-FESFVNP-YRMLEAKTRTLTGIRDQ 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + F N + + + + I Sbjct: 63 DVVHAPGIEEVLPVF---LNFAGELPLLGHRIIFDYSFLKRAAVNQGESFSRAGIDTLTL 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R +L + C +GI R H A+ D+ +Y M + + Sbjct: 120 ARLFMPAEERKNLKAACGWFGID--QRETHRAMADAVAAHQLYQAMKKRYGKERPDAFSE 177 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 ++ +K +K+ + + + L Sbjct: 178 KNLIYKVKKEQPASKRQKEHLQDLI 202 >gi|186701836|ref|ZP_02971504.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186701125|gb|EDU19407.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 1442 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 4/205 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL D IIE GA+ + + + Q + P + N + Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFLVKPIQQINEN---ITNLTNIS 465 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + N +AHN + + IDTL Sbjct: 466 QEMVNNAIDEKTALLKIKEIFDNHILVAHNGINFDINFINQRLLKWGLEPLKNPSIDTLM 525 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I+R +P + L ++CK+Y + + H A D+ +L+DV+ M +FG Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEIAHRADYDAIVLADVFKVMKNNLFN-DFGITNL 584 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + K + + N S Sbjct: 585 NEINTKLQTVMLKNRSFGNWINLYI 609 >gi|23099048|ref|NP_692514.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus iheyensis HTE831] gi|32469727|sp|Q8EQU6|DPO3_OCEIH RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|22777276|dbj|BAC13549.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus iheyensis HTE831] Length = 1428 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 6/221 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ +R F+ F P+ S + L GITD+ Sbjct: 414 FVVFDVETTGLSAVYDTIIELAAVKIKGGEIVDR-FESFANPHHA-LSQTTIDLTGITDD 471 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P + + +F N +AHNA FD+GF+N QRI+ + + Sbjct: 472 MVNDAPEVADVLKDFHT--WMGNDILVAHNASFDMGFLNQGFQRIDYEKASNPVVDTLEL 529 Query: 129 IARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + LN+LCK I HR+ + A +LL + +++ + Sbjct: 530 ARFLLPELRNHRLNTLCKHLDIELTQHHRAIYDAEATGYLLWKLVQRLVEKEISNHLELN 589 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 + ++ + +L+ + + + K H Sbjct: 590 NHMGENNAYQRSRPYHCTLIAQTEEGLKNLYKLVSRAHIDF 630 >gi|54023690|ref|YP_117932.1| hypothetical protein nfa17220 [Nocardia farcinica IFM 10152] gi|54015198|dbj|BAD56568.1| putative DNA polymerase III subunit [Nocardia farcinica IFM 10152] Length = 598 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 4/167 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + D I EIGAV++ F + P GR P +++ GIT Sbjct: 27 FVVVDLETTGTSPEGDAITEIGAVKVRGGEVLGE-FATLVNP-GRAIPPAVVQVTGITTA 84 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P ++ F + A +AHNA+FD F+ A R D + Sbjct: 85 LVYAAPRIEAVLPGFLE--FAAGAVLVAHNARFDTAFLRAAAARCALPWPDAPVLCTVKL 142 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + + S + H AL D+ DV ++ Sbjct: 143 ARRVLGRDEAPSVRLASLARLLGASTQPTHRALDDARATVDVLHALI 189 >gi|160880751|ref|YP_001559719.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg] gi|160429417|gb|ABX42980.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg] Length = 1527 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 7/195 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG S D+IIEIGAV++ + +R F F+ P KL ITDE Sbjct: 498 VVFDIETTGFSSVKDKIIEIGAVKIQHGTIVDR-FSTFINPE-VPIPYHIQKLTSITDEM 555 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + I EF F +AHNA FD+GFI + + +N S L+ Sbjct: 556 VIGSRTIEEILPEFLSFCEGCY--LVAHNASFDIGFITKKAEFLNIPLTVTSVDTVGLAR 613 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 H ++ ++IS + H A+ D+ +++Y+K + + Sbjct: 614 VLLNHLNNFKLDTVAKA---LSISLENHHRAVDDAGCTAEIYLKFLEMLRERGIETLAQI 670 Query: 190 DRFFKEEKKTVPNIS 204 +R + + + Sbjct: 671 NRAEEVTPDVIKKMP 685 >gi|227505453|ref|ZP_03935502.1| possible exonuclease, RNase T and DNA polymerase III [Corynebacterium striatum ATCC 6940] gi|227197946|gb|EEI77994.1| possible exonuclease, RNase T and DNA polymerase III [Corynebacterium striatum ATCC 6940] Length = 1118 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 60/231 (25%), Positives = 93/231 (40%), Gaps = 22/231 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D ETTG S DR+IEIG V L + T++ + P R + H IT Sbjct: 6 RYAVVDFETTGFGS-TDRVIEIGVVLLDHNREVESTWETLVQPQ-RDIPNSFV--HHITP 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIIDT 126 + D P F + EF+D N + AHNA F+V F+ E + + + ++DT Sbjct: 62 TDVVDAPLFGEVAGEFFDLLNGRTVV--AHNAPFEVRFLQREFSNLGVAWPNYGAWVVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + ++ +P L K GIT + H AL D+ ++++ ++ G Sbjct: 120 KRLFQQTYPGEGTTLEHALKVVGIT--NARPHSALADTLATAELFAWLVSQG-------- 169 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD--KTIQTLGKNA 235 D T+P R L E+L H + + L A Sbjct: 170 --NDVVISSRAITLPPHEFPARGALLPRTALAEDLT-HKRGEWLARLADTA 217 >gi|304404288|ref|ZP_07385950.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9] gi|304347266|gb|EFM13098.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9] Length = 1439 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 99/236 (41%), Gaps = 17/236 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL N +IIE+ V++ + +R F F+ P+ K +L ITDE Sbjct: 423 YVVFDIETTGLSIINCKIIELAGVKMRGGQEIDR-FSTFINPH-EKIPYHIQQLTNITDE 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P EF +F + A +AHNA+FD+GFI A + I + + Sbjct: 481 MVVDAPELEPKLREFVEFIGD--AVLVAHNARFDIGFIQANCKAIGLPEVMNPVLDTLEL 538 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L RY I+ + H A+ DS L V ++ ++ N Sbjct: 539 ARFLHPSMKNHRLNTLSARY--KINLENHHRAIDDSIALGGVLFGLIKDCNERNVTGLHQ 596 Query: 189 EDRFFKEEKKTVPNIS--------LLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236 + + + + K++ ++ E H K + + K+ + Sbjct: 597 LNDYVGLDLSNSRPFHCGIYALNAVGKKNLFKLISLSHTE---HFKRVACIPKSKL 649 >gi|251797402|ref|YP_003012133.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2] gi|247545028|gb|ACT02047.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2] Length = 1437 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 101/236 (42%), Gaps = 17/236 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTGL N++IIE+ V++ + + +R F F+ P+ K +L I DE Sbjct: 421 YIVFDIETTGLSIINNKIIELAGVKMREGKEVDR-FSTFINPH-EKIPYHIQQLTNINDE 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P EF DF + + +AHNA+FD+GFI A L+ I + + Sbjct: 479 MVKDAPELEPKLREFIDFIGD--SILVAHNARFDIGFIQANLKSIGMPDVTNPVLDTLEL 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L +Y ++ + H A+ DS L V ++ ++ N Sbjct: 537 ARFLHPTMKNHRLNTLSAKYKVS--LDNHHRAVDDSVALGGVLFGLINDAAERNITGLHQ 594 Query: 189 EDRFFKEEKKTVPNISLL--------KRDKPLFTRITKEELDEHDKTIQTLGKNAI 236 + + + K++ I+ E H K + + K+ + Sbjct: 595 LNDYVGLDISNSRPFHCNIYALNAAGKKNLFKMVSISHTE---HFKRVACIPKSKL 647 >gi|189425539|ref|YP_001952716.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ] gi|189421798|gb|ACD96196.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ] Length = 168 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 5/169 (2%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTGL +N R+IEIGAV + + T + +G S A ++HGI+ Sbjct: 3 RVIVVDTETTGLSVRNQGRVIEIGAVAVENGQITAE-LATLIN-SGTPISYGAYRVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ L +P+ ++ F + N+ +AHNA FD FIN EL + +P Sbjct: 61 EQMLAGRPTPQEVWPWFLE--FAGNSPLVAHNAAFDRAFINHELHLLGMSLANPWHCTVR 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 LS + + +G +H AL D+ + + V+++++ Sbjct: 119 LSRRKLPRLMNHKLETVYKHLFGELPEEVQRHRALDDARMAARVWVELL 167 >gi|104161981|emb|CAJ75690.1| DNA polymerase III, alpha subunit [uncultured Thermotogales bacterium] Length = 1428 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 84/219 (38%), Gaps = 4/219 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL+ K D IIEIGA+++ T+ F+ P ++ S L GIT++ Sbjct: 418 FLVFDLETTGLNPKEDEIIEIGAIKMKGSEVLG-TYSTFVKPE-KELSAMITSLTGITED 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + EF + +AHNA FD GF+ +++ + I Sbjct: 476 MLSEARPIKEVLPEFTK--FTEGCILVAHNASFDYGFVRNSVKKHFGGDWEMPCIDTLAL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + N + + H + + ++++ N Sbjct: 534 AKSLFRSKSYSLDNVVKRLKLGHFDHHRAFEDAKVTAEVLKKFVQLAKKRGVQNVNELEK 593 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 + + +IS+L ++K + + H K Sbjct: 594 LRKNQNLDSLKPFHISILAKNKKGLENLYRLVTASHTKY 632 >gi|331703357|ref|YP_004400044.1| DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801912|emb|CBW54065.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 1482 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 4/202 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FD+ETTGL + D IIE GA+E + + + + P + KL IT+ Sbjct: 434 RMVFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDILIKPKTKLK-AFTQKLTNITE 492 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L+DKPS F + + + A +AHNA FD F++ +++ L+ + I Sbjct: 493 KMLEDKPSIEQAFKQINEIIKD--AILVAHNANFDFTFLSYWSEKLGYGKLENTIIDTLT 550 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + L SL KR I+ H D+ +L+D+Y +M+ + T Sbjct: 551 ISRIIYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERMLDETRK-KIKIIT 609 Query: 188 NEDRFFKEEKKTVPNISLLKRD 209 + D + N++ K Sbjct: 610 DSDWNKIDPINYTDNLNYYKNK 631 >gi|217077387|ref|YP_002335105.1| DNA polymerase III PolC [Thermosipho africanus TCF52B] gi|217037242|gb|ACJ75764.1| DNA polymerase III, alpha subunit, Gram-positive type [Thermosipho africanus TCF52B] Length = 1365 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 12/226 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTG +++ D IIE GAV+ D TF+ F+ PN + + KL GIT++ L Sbjct: 350 VFDLETTGTNARFDEIIEFGAVKYKDGKII-DTFKSFVKPN-KDINDFTQKLTGITNDML 407 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD P + +F +F +AHNA FD GFI +++ L +DTL ++ Sbjct: 408 KDAPGIEEVVPKFLEFIEG--TVLVAHNADFDYGFIREVYRKMYDKDL-IMPYLDTLKLS 464 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY---IKMMVGGSQINFG--- 184 + + H A D+ + ++++ ++++ + Sbjct: 465 KVILKGKVKSFGLGKLVEYFKLGPFKHHRAFEDASVTAELFGKLVELLGKMGIKSLNDIN 524 Query: 185 -FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 K K+ +I++L +DK + K D H K + Sbjct: 525 KLKAGTSISSIRTKRVFNHITILVKDKIGLKNLYKLVSDAHVKYFK 570 >gi|254229191|ref|ZP_04922610.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp. Ex25] gi|262395541|ref|YP_003287394.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25] gi|151938276|gb|EDN57115.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp. Ex25] gi|262339135|gb|ACY52929.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25] Length = 204 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 9/176 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV+L+D +FQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPTLGDRAIEIGAVKLVDGEVV-DSFQRLMNP-GFRVSSFIENYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L+ PS + + F +F +N IAHNA FD F++AEL+RIN + + + Sbjct: 66 MLRSAPSCEEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCGYSGEFACSLLVA 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + PS + K + H AL D+ + + +++ M+ G Sbjct: 124 RRLIQDAPSHKLGELVRYKNI---DNDGVFHRALADAQMTAKLWLLMVEGLENSGI 176 >gi|329569951|gb|EGG51706.1| exonuclease, DNA polymerase III, epsilon subunit family [Enterococcus faecalis TX1467] Length = 240 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSTF 201 >gi|257463693|ref|ZP_05628083.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] gi|317061240|ref|ZP_07925725.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] gi|313686916|gb|EFS23751.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] Length = 1450 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 96/218 (44%), Gaps = 8/218 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V+D+ET G +S +IIEIGAV++++ +R F + P G+ + + ITD Sbjct: 424 FVVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDR-FSQLINP-GQSIPQNIVDVTNITDS 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++++P + F +F + +AHNA FD+G++ + ++ +P+ I Sbjct: 482 MVQNEPKLEEVLPNFLEFIRG--SILVAHNADFDIGYLKQQCKKYGYSDFNPAFIDTLQM 539 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG--FK 186 + L L K+ G+ + H A+ D ++++ + + + Sbjct: 540 AKDLYPELKQFGLGPLNKKLGL--YLENHHRAVDDCQATGNMFLIFLDKYLERGITKLSE 597 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224 E +K+ NI LL +++ + + D H Sbjct: 598 MQEAFPVNTKKQNTRNIMLLAKNRQGLENLNRLVSDAH 635 >gi|193216948|ref|YP_002000190.1| DNA polymerase III PolC [Mycoplasma arthritidis 158L3-1] gi|193002271|gb|ACF07486.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1] Length = 1438 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 11/226 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + IIE GA + + + Q F+ P + P ++ ITD Sbjct: 405 YVVFDLETTGLSPRFNEIIEFGASIIENG-IIKESHQFFIKP-TKPIPPSITEITKITDN 462 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + S + +D +N +AHNAKFD+ + D I Sbjct: 463 TVANGYSQEEGVRKIYDIL--KNRICVAHNAKFDINVCKENFLKYGLDNSKIIGIDSLAI 520 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L + K++ + + H A D+++L++V+I M+ Sbjct: 521 ARFLIDEAKSYRLEIVAKKFNVYYARNEAHRADYDANVLANVWILMI-------LKLARE 573 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++ E V + L + P R+ + K + + K+ Sbjct: 574 KNIRTANELAAVNDDKLFAKKFPREVRVIAKNQKGLKKLFKIISKS 619 >gi|257416585|ref|ZP_05593579.1| DNA polymerase III [Enterococcus faecalis AR01/DG] gi|257158413|gb|EEU88373.1| DNA polymerase III [Enterococcus faecalis ARO1/DG] Length = 929 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSTF 201 >gi|167037626|ref|YP_001665204.1| DNA polymerase III PolC [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116041|ref|YP_004186200.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856460|gb|ABY94868.1| DNA polymerase III, alpha subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929132|gb|ADV79817.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1407 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 7/196 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTGL + ND IIEIGAV++ + TF+ F+ P S KL GI + + Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKEGKII-DTFETFVNPK-IPISSFITKLTGIDESMV 453 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD PS I +F + N+ +AHNA FDV FI ++ ++ N + + LS Sbjct: 454 KDAPSIEEILPKFLE--FASNSVLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRH 511 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 K + + + H A+ D+ ++++IK + ++ + + Sbjct: 512 LYKDLKNYKLDT---LADHLQVKLEHHHRAVDDAMATAEIFIKTIDRLKELGVEKVKDIN 568 Query: 191 RFFKEEKKTVPNISLL 206 KE + + + + Sbjct: 569 AILKESEVDIRKLPVY 584 >gi|42525158|ref|NP_970538.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100] gi|39577369|emb|CAE81192.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100] Length = 217 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 6/171 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR I FD+ETTG D+I+EIGAV +D F + P R P A ++GI+ Sbjct: 13 MRFIAFDLETTGTVPGVDQIVEIGAVRFIDGQP-EAIFATLIDP-LRPIPPGASAVNGIS 70 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ +K KP +I F +F E +AHNA FD F+ A++++ + Sbjct: 71 DDMVKGKPLIDTILPAFAEFCGE--DVLVAHNAPFDSQFLIADIKKHETTAPRGVILDSL 128 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + L +L + I + H A D+ L ++ +MM Sbjct: 129 PIARKVFPGLPNYKLGTLVQHL--KIPTSNFHRAEEDATYLGHMFSQMMKR 177 >gi|331084769|ref|ZP_08333857.1| hypothetical protein HMPREF0987_00160 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410863|gb|EGG90285.1| hypothetical protein HMPREF0987_00160 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 238 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 70/223 (31%), Gaps = 8/223 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI+ + FD+ETTGL + D IIEIGAV++ D T+R F FL P + Sbjct: 1 MIKT----YVAFDLETTGLSEERDSIIEIGAVKVTDGKVTDR-FMEFLKPAEEISPMITQ 55 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + + + + I + HN FD F+ + Sbjct: 56 ITGITNEMVAHARNTKAVIDDFMG---FCGEEVLLGHNILFDYKFMKRYACKYQHSFERR 112 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ K SR+ + + L + L Sbjct: 113 GIDTLKIARKVHKDLESRSLEALCAHYQIKNDAAHRAYHDALATAKLYHCLGHYFEEKEP 172 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 F + + KE+ T L++ E+L+ Sbjct: 173 NLFVPEPLFYQPRKEQPATEKQKRYLEKLCGWHRIAVPEDLEA 215 >gi|310641590|ref|YP_003946348.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2] gi|309246540|gb|ADO56107.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2] Length = 1438 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 6/174 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL ++IIEI AV++ + + +R + F+ P+ R +L I DE Sbjct: 421 YVVFDIETTGLSVTQNKIIEIAAVKMHEGKEIDR-YATFVNPHER-IPYNIQQLTNINDE 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + EF +A +AHNA+FD+GFI A L+++ + + Sbjct: 479 MVKDAPDVEPVMKEFVA--FAGDAVLVAHNARFDIGFIQATLRKMGLPEMTNPVLDTLEL 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + LN+L +Y + S H A+ D+ L++V ++ QI Sbjct: 537 ARLLFPTMKNHRLNTLTSKYKVA--LESHHRAIDDTVALTEVLNGLLNDAEQIK 588 >gi|256384095|gb|ACU78665.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma mycoides subsp. capri str. GM12] gi|256384927|gb|ACU79496.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma mycoides subsp. capri str. GM12] gi|296455696|gb|ADH21931.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 1482 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 4/202 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FD+ETTGL + D IIE GA+E + + + + P + KL IT+ Sbjct: 434 RMVFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDILIKPKAKLK-AFTQKLTNITE 492 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L+DKPS F + + + A +AHNA FD F++ +++ L+ + I Sbjct: 493 KMLEDKPSIEQAFKQINEIIKD--AILVAHNANFDFTFLSYWSEKLGYGKLENTIIDTLT 550 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + L SL KR I+ H D+ +L+D+Y +M+ + T Sbjct: 551 ISRIIYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERMLDETRK-KIKIIT 609 Query: 188 NEDRFFKEEKKTVPNISLLKRD 209 + D + N++ K Sbjct: 610 DSDWNKIDPINYADNLNYYKNK 631 >gi|325289205|ref|YP_004265386.1| DNA polymerase III, epsilon subunit [Syntrophobotulus glycolicus DSM 8271] gi|324964606|gb|ADY55385.1| DNA polymerase III, epsilon subunit [Syntrophobotulus glycolicus DSM 8271] Length = 410 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 70/185 (37%), Gaps = 8/185 (4%) Query: 9 KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTGL + DRIIE+ + L + ++ + P +H I+ Sbjct: 4 YAVLDLETTGLFPEKHDRIIEVAIIILNSKGEIADQYETLVNP---DRDLGPTHIHKISA 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P F I + ++ HN +D FI E +R+ + +P Sbjct: 61 GMVSEAPKFKDIAGDIIHCLAGKHII--GHNIAYDYRFIKHEFRRLKVEIPEPQMSCTFH 118 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + L +LC + I + H+ H A D + + ++ ++ K Sbjct: 119 LTRKVEPDLPCRKLEALCSYFDIPLEHK--HAAYFDCYATAVLFQTLLKKHGIKILEEKE 176 Query: 188 NEDRF 192 ++ Sbjct: 177 IQEHI 181 >gi|209964314|ref|YP_002297229.1| exonuclease, putative [Rhodospirillum centenum SW] gi|209957780|gb|ACI98416.1| exonuclease, putative [Rhodospirillum centenum SW] Length = 699 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 8/177 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +VFD ETTGL+ + D ++ + V +++ T TFQ + P GR + +HGIT Sbjct: 506 YVVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINP-GRAIPAASAAIHGIT 564 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + + P ++ F F + A +AHNA FD+ F+ + + P Sbjct: 565 DAMVAEAPRAEAVLPPFRAFVGD--AVLVAHNAAFDLKFLRLKQRAAGVRFDGPVLDTMI 622 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 LS + + + + I +H A+ DS + + +++++M Sbjct: 623 LSRQIQGDHGEHSLDGLAAR---LGIGLVDRHSAMGDSLMTAAIFLRLMDMLETQGI 676 >gi|256763069|ref|ZP_05503649.1| DNA polymerase III [Enterococcus faecalis T3] gi|257079582|ref|ZP_05573943.1| DNA polymerase III [Enterococcus faecalis JH1] gi|294779459|ref|ZP_06744857.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis PC1.1] gi|307270866|ref|ZP_07552153.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX4248] gi|312903707|ref|ZP_07762881.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0635] gi|256684320|gb|EEU24015.1| DNA polymerase III [Enterococcus faecalis T3] gi|256987612|gb|EEU74914.1| DNA polymerase III [Enterococcus faecalis JH1] gi|294453465|gb|EFG21869.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis PC1.1] gi|306512779|gb|EFM81424.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX4248] gi|310632899|gb|EFQ16182.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0635] gi|315166434|gb|EFU10451.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX1341] Length = 929 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSTF 201 >gi|315173642|gb|EFU17659.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX1346] Length = 929 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSTF 201 >gi|315035644|gb|EFT47576.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0027] Length = 929 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSTF 201 >gi|256963550|ref|ZP_05567721.1| DNA polymerase III [Enterococcus faecalis HIP11704] gi|307271490|ref|ZP_07552762.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0855] gi|256954046|gb|EEU70678.1| DNA polymerase III [Enterococcus faecalis HIP11704] gi|306511762|gb|EFM80760.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0855] Length = 929 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSTF 201 >gi|326389440|ref|ZP_08211007.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW 200] gi|325994445|gb|EGD52870.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW 200] Length = 1407 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 7/196 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTGL + ND IIEIGAV++ + TF+ F+ P S KL GI + + Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKEGKII-DTFETFVNPK-IPISSFITKLTGIDESMV 453 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD PS I +F + N+ +AHNA FDV FI ++ ++ N + + LS Sbjct: 454 KDAPSIEEILPKFLE--FASNSVLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRH 511 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 K + + + H A+ D+ ++++IK + ++ + + Sbjct: 512 LYKDLKNYKLDT---LADHLQVKLEHHHRAVDDAMATAEIFIKTIDRLKELGVEKVKDIN 568 Query: 191 RFFKEEKKTVPNISLL 206 KE + + + + Sbjct: 569 AILKESEVDIRKLPVY 584 >gi|315497459|ref|YP_004086263.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB 48] gi|315415471|gb|ADU12112.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB 48] Length = 717 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG S N+R+ EIGAV++ + T+Q + P R+ P +L GI++ + Sbjct: 547 VVDIETTGGQSANERVTEIGAVKIRNGEII-DTWQSLINPE-RRIPPFITELTGISNAMV 604 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D P F+ I +F F ++AHN FD GF++AE +R+ + P Sbjct: 605 RDAPRFADIADDFDAFLKG--TVFVAHNVNFDYGFLSAEYRRLERPFRYPKMCTVASMRR 662 Query: 131 R 131 Sbjct: 663 H 663 >gi|156741527|ref|YP_001431656.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM 13941] gi|156232855|gb|ABU57638.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM 13941] Length = 944 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 11/180 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL++ D IIEI AV+ TF + P + +L GIT E Sbjct: 5 YVAIDVETTGLEAGVDEIIEIAAVKFRTGEVI-ETFDTLVQP-RHSLPLNSSRLTGITAE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P FS + F F +N + HN +FD+ + A+ R+ + D + Sbjct: 63 MLAGAPRFSEVAPRFAAFL--KNYPLVGHNVRFDINMLQAQGMRLPQPAFDTFELA---- 116 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L++L + GI H AL D+ + V++ ++ ++ Sbjct: 117 -TLLMPRTPAYRLSALAETLGIVH--DEAHRALSDADVTRQVFLHLLRRIDALSLNDLNE 173 >gi|315161735|gb|EFU05752.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0645] Length = 929 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSTF 201 >gi|255972155|ref|ZP_05422741.1| DNA polymerase III [Enterococcus faecalis T1] gi|255963173|gb|EET95649.1| DNA polymerase III [Enterococcus faecalis T1] Length = 929 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSTF 201 >gi|229549451|ref|ZP_04438176.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis ATCC 29200] gi|256956656|ref|ZP_05560827.1| DNA polymerase III [Enterococcus faecalis DS5] gi|257419833|ref|ZP_05596827.1| DNA polymerase III [Enterococcus faecalis T11] gi|300861259|ref|ZP_07107346.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus faecalis TUSoD Ef11] gi|312953414|ref|ZP_07772254.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0102] gi|229305688|gb|EEN71684.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis ATCC 29200] gi|256947152|gb|EEU63784.1| DNA polymerase III [Enterococcus faecalis DS5] gi|257161661|gb|EEU91621.1| DNA polymerase III [Enterococcus faecalis T11] gi|300850298|gb|EFK78048.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus faecalis TUSoD Ef11] gi|310628623|gb|EFQ11906.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0102] gi|315152082|gb|EFT96098.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0031] gi|315159114|gb|EFU03131.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0312] gi|315170323|gb|EFU14340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX1342] gi|327535661|gb|AEA94495.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis OG1RF] Length = 929 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSTF 201 >gi|239826652|ref|YP_002949276.1| DNA polymerase III PolC [Geobacillus sp. WCH70] gi|239806945|gb|ACS24010.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70] Length = 1435 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + IIE+ AV++ D +R F F P+ S ++L GITD+ Sbjct: 420 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FTSFANPH-HPLSITTIELTGITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD P + +F+D+ + + +AHNA FD+GF+N ++ + I Sbjct: 478 MLKDAPDVEEVLRQFYDWMGD--SILVAHNASFDIGFLNVGFTKLGLGKVTNPVIDTLEL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK++ I H A+ D+ + ++++ + + Sbjct: 536 ARFLYPELKNHRLNTLCKKF--DIELTQHHRAIYDAEATGYLLMRLLKDAQERGI-LYHD 592 Query: 189 EDRFFKEEKKTVPNISLL 206 E +E+ + Sbjct: 593 ELNERSKEEVSYQRSRPF 610 >gi|256853717|ref|ZP_05559082.1| DNA polymerase III [Enterococcus faecalis T8] gi|307291048|ref|ZP_07570934.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0411] gi|256710660|gb|EEU25703.1| DNA polymerase III [Enterococcus faecalis T8] gi|306497897|gb|EFM67428.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0411] gi|315030986|gb|EFT42918.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX4000] Length = 929 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSTF 201 >gi|82523686|emb|CAI78468.1| Rad3-related DNA helicases [uncultured candidate division WS3 bacterium] Length = 965 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 5/174 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG+DS+ DRIIE+GAV ++D TF+ F+ P G + + L GI+D Sbjct: 28 FVGLDLETTGVDSRVDRIIEVGAVRVVDGR-VADTFESFVNP-GCPIPSDIVHLTGISDA 85 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+ + +F + +AH+A FD GF++ + + DTL Sbjct: 86 DVAGAPTIDEVLPRIIEFIGG--SPIVAHHAPFDTGFLDEAAGGRPGLLVGRGGVFDTLP 143 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + R P N + R+ I H A D+ +SD+++ ++ QI Sbjct: 144 LTRALLPRLPNHRLATAARF-FDIPTGRSHRATDDARAVSDLFLALLGVLDQIG 196 >gi|323481332|gb|ADX80771.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis 62] Length = 929 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSTF 201 >gi|315032870|gb|EFT44802.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0017] Length = 929 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSTF 201 >gi|307287736|ref|ZP_07567779.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0109] gi|306501474|gb|EFM70777.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0109] gi|315164835|gb|EFU08852.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX1302] Length = 929 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSTF 201 >gi|257087406|ref|ZP_05581767.1| DNA polymerase III [Enterococcus faecalis D6] gi|256995436|gb|EEU82738.1| DNA polymerase III [Enterococcus faecalis D6] gi|315025444|gb|EFT37376.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX2137] Length = 929 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSTF 201 >gi|291521660|emb|CBK79953.1| exonuclease, DNA polymerase III, epsilon subunit family [Coprococcus catus GD/7] Length = 245 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 11/199 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ +VFD+ETTGL D IIEIGA++++ +R F F+ P+ +K + + Sbjct: 1 MVKD----YVVFDLETTGLSPDKDTIIEIGALKVIQGKVADR-FSEFINPH-QKLTQQIS 54 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GITD+ L + + +F DF + + HN FD F ++ + Sbjct: 55 ELTGITDDMLAGARNLQVVVGDFVDFCED--YVVVGHNLGFDYRFTKMAAEKYHLPFEHE 112 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ K L +LC+ YG I + S H A D+ + +Y + Sbjct: 113 GIDTLKIAKTVHKD-LPSRSLGALCEHYG--IINSSAHRAYHDALATAKLYQTLAHYFET 169 Query: 181 INFGFKTNEDRFFKEEKKT 199 E FK +K+ Sbjct: 170 SEPKLFVPEKMGFKAKKQQ 188 >gi|256849838|ref|ZP_05555269.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|256713327|gb|EEU28317.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] Length = 1436 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH---HPLSEQTINLTSIT 474 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R + + Sbjct: 475 DEMVGAADDEAVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTLEV 534 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 SR+ L+SL K+Y +++ H H A D+ + K++ ++ N Sbjct: 535 SRLLHPEQSRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMFKLLDAFNKKYHENNLN 592 Query: 189 EDRFFKEEKKTVPNISLL 206 + + Sbjct: 593 NLNGYAAHGEVYKRARPS 610 >gi|227878821|ref|ZP_03996728.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|227861569|gb|EEJ69181.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] Length = 1436 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH---HPLSEQTINLTSIT 474 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R + + Sbjct: 475 DEMVGAADDEAVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTLEV 534 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 SR+ L+SL K+Y +++ H H A D+ + K++ ++ N Sbjct: 535 SRLLHPEQSRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMFKLLDAFNKKYHENNLN 592 Query: 189 EDRFFKEEKKTVPNISLL 206 + + Sbjct: 593 NLNGYAAHGEVYKRARPS 610 >gi|295396947|ref|ZP_06807069.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563] gi|294974800|gb|EFG50505.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563] Length = 1439 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 5/197 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + + TF+ F+ P GR S + L GITD Sbjct: 423 YVVFDVETTGLSAIYDNIIELAAVKMQNGNVI-DTFEEFINP-GRPLSATIIDLTGITDA 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + S+F ++ + A ++AHNA FD+GFI+ R + + I Sbjct: 481 MLANTRTEKEVISDFREWVGD--AIFVAHNASFDMGFIDTAYNRHGFEKSHNAVIDTLEM 538 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKH-GALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + LN+L KRY + + + + L+ ++IK +I + + Sbjct: 539 SRFLHPNLKSHRLNTLAKRYNVALEQHHRAVYDAETTGALAWIFIKEAAADHEIFYHDEL 598 Query: 188 NEDRFFKEEKKTVPNIS 204 N+D + K Sbjct: 599 NKDVGKGDAYKQGRPFH 615 >gi|323342031|ref|ZP_08082264.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464456|gb|EFY09649.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414] Length = 1433 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 91/235 (38%), Gaps = 17/235 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL + D IIE G V + + + Q F+ P +L ITD Sbjct: 385 YVSFDLETTGLSNYYDHIIEFGGVLIENGRVVKKM-QTFIK-APVPVRPFIQELTNITDA 442 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + PS E +F + +AHNA+FD+ FI L+RI K+P+ + I Sbjct: 443 DLVNAPSIEEAMDEILEFLGD--HVLVAHNAQFDIDFIQETLRRIGKEPIQNAVIDTLDL 500 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L S+ + I H A D+ +LS V+++M+ T Sbjct: 501 SRALFDNRRSYRLGSIARFMRIGYDEGVAHRADYDAEVLSLVFLEMLRLEQ-----LSTM 555 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD--------EHDKTIQTLGKNA 235 + + + L++ T+ + H K + GK + Sbjct: 556 QTIDDLQSLNNESSFKKLRKSHCTVIAKTQSSIKDLYQLITLSHTKYLAFFGKTS 610 >gi|294140713|ref|YP_003556691.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12] gi|293327182|dbj|BAJ01913.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12] Length = 206 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 72/196 (36%), Gaps = 13/196 (6%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I+ D ETTGL + DR IEIGAV + D TFQ + P R + Sbjct: 10 IILDFETTGLSPNQGDRAIEIGAVRIQDGIVV-DTFQELMNPGFRVSGFIEGYTGISNAM 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P + + +AHNA FD F++ + + + ++ Sbjct: 69 LANAAPCEEVMARFAD---FIGDHNLVAHNASFDQRFLD--AELDGINLSYGGKFACSML 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ------IN 182 IARR + + N Y + H AL DS + + ++++M+ + Sbjct: 124 IARRLYQDAPNHKLGGLVEYKQIENDGVFHRALADSEMTAKLWLQMLDDMRSEHGITAPS 183 Query: 183 FGFKTNEDRFFKEEKK 198 F + R K + Sbjct: 184 FTLMQDLSRKPKAQVN 199 >gi|218289182|ref|ZP_03493418.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius LAA1] gi|218240765|gb|EED07944.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius LAA1] Length = 952 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 2/91 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I+ D ETTGL+ + I+EIGA+ + TF + P R E +L G++ Sbjct: 1 MEWIIVDFETTGLEPERAEILEIGALRVRGGEIV-DTFHTLVRPE-RPIPDEITRLTGLS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97 D + PS F F + Sbjct: 59 DTDVAGAPSEREALMRFATFAGDTPMAGHHW 89 >gi|262046916|ref|ZP_06019876.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US] gi|260572898|gb|EEX29458.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US] Length = 1436 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH---HPLSEQTINLTSIT 474 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R + + Sbjct: 475 DEMVGAADDEAVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTLEV 534 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 SR+ L+SL K+Y +++ H H A D+ + K++ ++ N Sbjct: 535 SRLLHPEQSRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMFKLLDAFNKKYHENNLN 592 Query: 189 EDRFFKEEKKTVPNISLL 206 + + Sbjct: 593 NLNGYAAHGEVYKRARPS 610 >gi|238854632|ref|ZP_04644962.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 269-3] gi|260664425|ref|ZP_05865277.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US] gi|282932977|ref|ZP_06338374.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 208-1] gi|238832422|gb|EEQ24729.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 269-3] gi|260561490|gb|EEX27462.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US] gi|281303012|gb|EFA95217.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 208-1] Length = 936 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 68/222 (30%), Gaps = 4/222 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG DRII+ G + + +T+ + P L GI Sbjct: 10 FAVVDLETTGTRRGQDRIIQFGCAIIKNRQII-KTYSFLINPE-ADIPQAVQNLTGIKPT 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++P F ++ D + N K ++ Sbjct: 68 DVINQPVFKKYAAQIEDILQDTVFVAHNINFDLPFLNAELAANSFPKLHNRAIDTVELSK 127 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 IA PS R + T H++ A + LL ++ K+ + Sbjct: 128 IAFPTLPSYRLSDLTHSLNLKHTNPHQADSDAYATASLLLKIFDKLETLPQSTLNTLTSL 187 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 ++ + IS R + + K+ H ++ Sbjct: 188 SKGLLRDTQFIFKEISEFTRQEKRP--LPKKYRQVHSLVLKK 227 >gi|257082037|ref|ZP_05576398.1| DNA polymerase III [Enterococcus faecalis E1Sol] gi|256990067|gb|EEU77369.1| DNA polymerase III [Enterococcus faecalis E1Sol] Length = 929 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSAF 201 >gi|291320001|ref|YP_003515259.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae] gi|290752330|emb|CBH40301.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae] Length = 1459 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 2/188 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FDIETTGL K IIE GAV++ K + Q F+ P + + Sbjct: 425 YVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGKVTQFFIKPQAKIGAFTTELTGITQQM 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S +D + IAHNAKFD F+ + + N + + I ++ Sbjct: 485 LDSEGLSIKDGLQRIYDCLDG--KVAIAHNAKFDFNFLKEQFRLNNVPFPNVTVIDTLIA 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R+ L + R G+ H D+ +L++V++ ++ + N + Sbjct: 543 SRIGFPNYKRHKLEDVASRLGVVYDPNVAHRGDYDAKVLANVWVNIISELNSKNIFTFED 602 Query: 189 EDRFFKEE 196 F + Sbjct: 603 LGNFTSND 610 >gi|226312093|ref|YP_002771987.1| ATP-dependent helicase [Brevibacillus brevis NBRC 100599] gi|226095041|dbj|BAH43483.1| probable ATP-dependent helicase [Brevibacillus brevis NBRC 100599] Length = 967 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 7/177 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG + D II+IGAV + D T +F + P G+ P +L GIT Sbjct: 3 RLLVVDFETTGSHPRQGDSIIQIGAVAIDDGQIT-ESFSTLIHP-GQDIPPFITQLTGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + D PS +F +F + ++AHNA FD+ F+ L D + Sbjct: 61 NEMVADAPSLEEVFPDFLRLLDG--RAFVAHNASFDLQFLQEALLSQGYYAFDGYVLDTV 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L I + H A D+ + +++ ++ ++ Sbjct: 119 ELSRVLLPMQNSYRLGELASELEIEH--DNPHQADSDALATAQLFLHLLDILKKLPL 173 >gi|218961823|ref|YP_001741598.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas acidaminovorans] gi|167730480|emb|CAO81392.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas acidaminovorans] Length = 960 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 6/168 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTGL+S+ D II+I + F + P G+ L I+ + Sbjct: 24 FVAIDIETTGLNSEWDEIIQIAGMRFKGEEVV-NQFVSLVKPKGK-VPKFIEHLTHISPQ 81 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK P + +F +F + + + HN FD F+N + P+ Sbjct: 82 ELKTAPPIKEVLKDFCNFIGD--SILVGHNIGFDFNFLNQFIVDNGGFPISNMHWDTAEI 139 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ + L++L +GI + + H A D+ ++ + Sbjct: 140 GRIYLPFTTDHKLSTLVSFFGIELM--NAHQADADALATGKLFNALTN 185 >gi|315150174|gb|EFT94190.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0012] Length = 929 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSAF 201 >gi|224540943|ref|ZP_03681482.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM 15897] gi|224526094|gb|EEF95199.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM 15897] Length = 1444 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 4/195 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ N + + FD+ETTGL +D I EIGAV++ + + R Q F+ + + S + + Sbjct: 397 LKLNDLTYVSFDLETTGLSQIDDYITEIGAVKIKNGLEVGR-LQTFIK-SPKPISKKITE 454 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L IT+E +++ P+ +FF + IAHN +FD+G ++ L+R+ K P+ Sbjct: 455 LTSITNEDIRNAPTIEEFMPRLMEFFGD--DLLIAHNGRFDIGMLDKALERMGKSPISNP 512 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 I R L ++C+ Y I + H A D+ +LS + M+ + Sbjct: 513 WIDTLPLSRRLIPLQRSYRLGAVCRFYHIPYDTEAAHRADYDAEVLSHSFNVMLQDLIKK 572 Query: 182 NFGFKTNEDRFFKEE 196 F + EE Sbjct: 573 GFKTIDEVNDIEIEE 587 >gi|329667117|gb|AEB93065.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii DPC 6026] Length = 1432 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 9/215 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH---HPLSDTTINLTSIT 470 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R + + + Sbjct: 471 DEMVGVADDEKDVIKKFKEFYGDRPLCGHNVQFDVGFVNAALRRAGLEEITQPVVDTLEV 530 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ ++ F Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFNER---FHEA 585 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + + K K + +E L Sbjct: 586 DLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKN 620 >gi|256843343|ref|ZP_05548831.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN] gi|293381212|ref|ZP_06627220.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus crispatus 214-1] gi|256614763|gb|EEU19964.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN] gi|290922252|gb|EFD99246.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus crispatus 214-1] Length = 1436 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH---HPLSEQTINLTSIT 474 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R + + Sbjct: 475 DEMVGAADDEAVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTLEV 534 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 SR+ L+SL K+Y +++ H H A D+ + K++ ++ N Sbjct: 535 SRLLHPEQSRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMFKLLDAFNKKYHENNLN 592 Query: 189 EDRFFKEEKKTVPNISLL 206 + + Sbjct: 593 NLNGYAAHGEVYKRARPS 610 >gi|323489712|ref|ZP_08094939.1| ATP-dependent helicase dinG [Planococcus donghaensis MPA1U2] gi|323396843|gb|EGA89662.1| ATP-dependent helicase dinG [Planococcus donghaensis MPA1U2] Length = 920 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 18/218 (8%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N + +V DIETTG K DRII++ V + + T T+ F+ P GR L Sbjct: 2 NTQKYVVVDIETTGHSPAKGDRIIQLAMVTIENGEIT-DTYTEFINP-GRTIPLFIQDLT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 ITD + + +F ++ + A ++AHN FD+ F+ AEL+R + Sbjct: 60 NITDADVAEAKAFEHYAQTVYEKMQD--AIFVAHNTNFDLPFLQAELKRSGLPKWQGLTM 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--------- 174 + + L + GI S H A D+ + ++++ Sbjct: 118 DTVELVRLMYPTAFSFKLQDITSELGIP--LESAHRADDDAMATALLFLRAKEDLASLPY 175 Query: 175 --MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 + + +F K++ R F E + N D+ Sbjct: 176 ATLAFLHKRSFQLKSDLSRLFFELTQKKRNAQADDFDR 213 >gi|295693139|ref|YP_003601749.1| DNA polymerase iii, alpha subunit [Lactobacillus crispatus ST1] gi|295031245|emb|CBL50724.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus ST1] Length = 1436 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH---HPLSEQTINLTSIT 474 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R + + Sbjct: 475 DEMVGAADDEAVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTLEV 534 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 SR+ L+SL K+Y +++ H H A D+ + K++ ++ N Sbjct: 535 SRLLHPEQSRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMFKLLDAFNKKYHENNLN 592 Query: 189 EDRFFKEEKKTVPNISLL 206 + + Sbjct: 593 NLNGYAAHGEVYKRARPS 610 >gi|149188690|ref|ZP_01866982.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Vibrio shilonii AK1] gi|148837600|gb|EDL54545.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Vibrio shilonii AK1] Length = 207 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 5/106 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M+ + +V D ETTGL + DR IEIGAV+L + + +R FQ + P G + S Sbjct: 1 MMLSSAKSVVVLDFETTGLSPNQGDRAIEIGAVKLENGTVVDR-FQSLMNP-GFRVSGFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 GI++ L + PS + EF F N +AHNA FD F Sbjct: 59 ENYTGISNAMLANAPSCKDVMGEFSTFIKNSN--LVAHNASFDKRF 102 >gi|71279381|ref|YP_267529.1| exonuclease [Colwellia psychrerythraea 34H] gi|71145121|gb|AAZ25594.1| exonuclease [Colwellia psychrerythraea 34H] Length = 203 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 57/172 (33%), Positives = 80/172 (46%), Gaps = 7/172 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I+ D ETTGL DR IEIGAV+L + T+R FQ + P GR S GIT+ Sbjct: 7 IILDFETTGLSPDNGDRAIEIGAVKLENGVVTDR-FQELMYP-GRPVSHFIADYTGITNV 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + F F QN +AHNA FD F+++EL+RI+ D L Sbjct: 65 MLSKAAPCHEVMDRFSGFIQGQN--LVAHNASFDKRFLDSELKRISSGY-DGQFACSLLL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R + + L +L GI + H AL DS + + +++ M+ Q Sbjct: 122 SRRLYQTAPNHKLGTLINYKGIASNGS-FHRALYDSEMTAKLWVAMLDDIQQ 172 >gi|297530567|ref|YP_003671842.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3] gi|297253819|gb|ADI27265.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3] Length = 1444 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 6/190 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + IIE+ AV++ D +R F +F P G S ++L GITDE Sbjct: 429 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMLFANP-GHPLSVTTMELTGITDE 486 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + + F D +A +AHNA FD+GF+NA L R+ + + I Sbjct: 487 MVKDAPKPDEVLARFVD--WAGDATLVAHNASFDIGFLNAGLARMGRGKIANPVIDTLEL 544 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK++ I H A+ D+ + ++++ + F Sbjct: 545 ARFLYPDLKNHRLNTLCKKF--DIELTQHHRAIYDAEATGHLLMRLLKEAEERGILFHDE 602 Query: 189 EDRFFKEEKK 198 + E Sbjct: 603 LNSRTHSEAS 612 >gi|253573562|ref|ZP_04850905.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251847090|gb|EES75095.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 1438 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 103/242 (42%), Gaps = 28/242 (11%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL ++IIEI AV++ + + +R + F+ P+ R +L I D+ Sbjct: 421 YVVFDIETTGLSVTQNKIIEIAAVKMREGKEIDR-YATFVNPHER-IPYHIQQLTNINDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + F + ++A +AHNA+FD F+NA+L+ + ++ + Sbjct: 479 MVKDAPDVEPVLKRFVE--FAEDAILVAHNARFDYDFVNAKLKELGLPIMENPVLDTLEL 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L +Y ++ + H A+ D+ L ++ ++ + Sbjct: 537 ARMLFPTMKNHRLNTLAAKYKVS--LENHHRAIDDTVALGEILNGLLDDA--VKIEGYKT 592 Query: 189 EDRFFKEEKKTVPNISLL-----------KRDKPLFTRITKEELDEHDKTIQT---LGKN 234 DR + K + N K++ ++ H + + + K+ Sbjct: 593 LDRLNDKVGKDLSNARPFHCGIYALNPVGKKNLFKLISLS------HTEYFKRVPCIPKS 646 Query: 235 AI 236 + Sbjct: 647 KL 648 >gi|118443832|ref|YP_878213.1| DNA polymerase III PolC [Clostridium novyi NT] gi|118134288|gb|ABK61332.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium novyi NT] Length = 1444 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 44/193 (22%), Positives = 85/193 (44%), Gaps = 7/193 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG S+ D+IIE GAV++ + + +F F+ P + + +L IT++ Sbjct: 431 FVVFDLETTGFSSQYDKIIEFGAVKIKNGNII-DSFSAFVNPEIK-IPYKITELTSITND 488 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD + + +F + +AHN+ FD+ FI + +N + L+ Sbjct: 489 DVKDAETIDKVLPKFIK--FAEGTVLVAHNSNFDMSFIRKNCKDLNIECNYTVMDTIPLA 546 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R LN++ K G++ + H A+ D+ D+ + ++N + + Sbjct: 547 -KFLFPELKRYKLNTIAKHLGVS--LENHHRAVDDAKATGDILVHCFKLLKEMNITYLDD 603 Query: 189 EDRFFKEEKKTVP 201 + F Sbjct: 604 LNNKFLGNIDVKK 616 >gi|312899802|ref|ZP_07759121.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0470] gi|311293052|gb|EFQ71608.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0470] gi|315146017|gb|EFT90033.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX2141] Length = 929 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSAF 201 >gi|227553912|ref|ZP_03983959.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis HH22] gi|227176898|gb|EEI57870.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis HH22] Length = 929 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSAF 201 >gi|255975219|ref|ZP_05425805.1| DNA polymerase III [Enterococcus faecalis T2] gi|307285838|ref|ZP_07565972.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0860] gi|255968091|gb|EET98713.1| DNA polymerase III [Enterococcus faecalis T2] gi|306502599|gb|EFM71866.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0860] Length = 929 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSAF 201 >gi|237737108|ref|ZP_04567589.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817] gi|229420970|gb|EEO36017.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817] Length = 1450 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 6/176 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IVFD+ET GL+S IIEIGAV+L +R F + P + + +L IT Sbjct: 423 NFIVFDLETMGLNSHEHEIIEIGAVKLRGNRIVDR-FSQLVNPQ-KPIPKKIQELTNITQ 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + + P+ + +F +F + AHNA FD+GFI +++R+ P+ I Sbjct: 481 EMVDNMPTIEEVLPKFMEFVGDATMV--AHNAAFDMGFIRRDVKRLLGYDYTPAIIDTLQ 538 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 L +L K G++ S H A+ DS ++++I M + Sbjct: 539 MARDLYPDLKGYGLKNLNKVLGLS--LESHHRAVDDSQATANMFIIFMERYLEKGI 592 >gi|229012784|ref|ZP_04169953.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048] gi|228748465|gb|EEL98321.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048] Length = 318 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPEL-SIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + + I Sbjct: 71 RVSDAPTIEEVLPLFLAFLHT--NVIVAHNASFDMRFLKSNVNMLGLPEPKNNVIDTVFL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + L +L + GI +S + + + Sbjct: 129 AKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQ 169 >gi|269219439|ref|ZP_06163293.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269211135|gb|EEZ77475.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 589 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 59/175 (33%), Gaps = 3/175 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + I EIGAV++ F + P G+ L GIT Sbjct: 44 FVVVDLETTGAKPGPESITEIGAVKVRGGETVGE-FSTLVNP-GQPIPAFITSLTGITTA 101 Query: 69 FLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 P +++ +F + AHNA+FDVG + A + + Sbjct: 102 MTARAPRIAAVIPSLIEFLCAGPSTVVAAHNARFDVGHLKAAFAGADFTWPSVRVLDTVA 161 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R + + H AL D+ DV M+ + Sbjct: 162 LARRAFSSDEVPNFKLSTLAGACGATTAPNHRALDDARATVDVLHAMLGRLGPLG 216 >gi|256617168|ref|ZP_05474014.1| DNA polymerase III [Enterococcus faecalis ATCC 4200] gi|307277210|ref|ZP_07558314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX2134] gi|256596695|gb|EEU15871.1| DNA polymerase III [Enterococcus faecalis ATCC 4200] gi|295113409|emb|CBL32046.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus sp. 7L76] gi|306506140|gb|EFM75306.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX2134] Length = 929 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSAF 201 >gi|29376872|ref|NP_816026.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Enterococcus faecalis V583] gi|227519901|ref|ZP_03949950.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis TX0104] gi|29344337|gb|AAO82096.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Enterococcus faecalis V583] gi|227072695|gb|EEI10658.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis TX0104] gi|315574388|gb|EFU86579.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0309B] gi|315580138|gb|EFU92329.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0309A] Length = 929 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSAF 201 >gi|257084662|ref|ZP_05579023.1| DNA polymerase III [Enterococcus faecalis Fly1] gi|256992692|gb|EEU79994.1| DNA polymerase III [Enterococcus faecalis Fly1] Length = 929 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QAVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSAF 201 >gi|254505589|ref|ZP_05117736.1| DNA polymerase III PolC-type [Vibrio parahaemolyticus 16] gi|219551706|gb|EED28684.1| DNA polymerase III PolC-type [Vibrio parahaemolyticus 16] Length = 204 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 9/177 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV+L++ TFQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPNMGDRAIEIGAVKLVNGEVV-DTFQQLMNP-GFRVSSFIEGYTGITNV 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L+D PS + ++F F +N +AHNA FD F++ EL+R+N + + + Sbjct: 66 MLRDAPSCDEVMAQFAQFIAGEN--LVAHNASFDKRFLDDELERVNAAYSGEFACSLLVS 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + PS + K+ + H AL D+ + + +++ M+ Sbjct: 124 RRLNQDAPSHKLGDLVRFKQI---DNDGVFHRALADAEMTAKLWMLMVNDLQSRGIS 177 >gi|42519364|ref|NP_965294.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533] gi|41583652|gb|AAS09260.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533] Length = 1432 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 9/215 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH---HPLSDTTINLTSIT 470 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R + + + Sbjct: 471 DEMVGAADDEKDVIKKFKEFYGDRPLCGHNVQFDVGFVNAALRRAGLEEITQPVVDTLEV 530 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ ++ F Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFNER---FHEA 585 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + + K K + +E L Sbjct: 586 DLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKN 620 >gi|300784117|ref|YP_003764408.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32] gi|299793631|gb|ADJ44006.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32] Length = 567 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 61/174 (35%), Gaps = 4/174 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG I EIGAV++ F + P G P+ + L GIT Sbjct: 22 FVVFDLETTGAPPGPSGITEIGAVKVRGGEVLGE-FATLVNP-GAPIPPQIVSLTGITQA 79 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P + F +F A +AHN+ FD + A + + + Sbjct: 80 MVYDAPPIEEVLPAFLEFIGG--AVLVAHNSGFDTSHMRAACEGHGYVWPKATVVCTVRL 137 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R N R H AL D+ DV ++ + Sbjct: 138 ARRVVPRDEVGRYNLTALALLFGARTRPTHRALDDARATVDVLHGLLERVGNLG 191 >gi|257421980|ref|ZP_05598970.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98] gi|257163804|gb|EEU93764.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98] gi|315155308|gb|EFT99324.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0043] Length = 929 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSAF 201 >gi|68535768|ref|YP_250473.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411] gi|68263367|emb|CAI36855.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411] Length = 222 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 4/98 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG + + DRIIEI AV + ++ L P+G+ + +HGIT++ Sbjct: 21 FAVIDTETTGFNKRYDRIIEIAAVRADAHFNPVDSWHTLLNPDGKAI--KNSHIHGITND 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 + P+FS ++ +F + + + AHNA FD I Sbjct: 79 MVATAPTFSEVYGDFTSYIDGMH--LFAHNAPFDSKMI 114 >gi|213965283|ref|ZP_03393480.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum SK46] gi|213952135|gb|EEB63520.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum SK46] Length = 529 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 4/169 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGL +KND IIEIGA++ TF F+ P G + L GIT Sbjct: 23 FVVVDLETTGLKAKNDHIIEIGAIKTRGGKTIG-TFSSFIDP-GMEIPDHITSLTGITTA 80 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P ++ ++F + + + W+AHNAKFD+GF+ + D PS + Sbjct: 81 DVETAPQLGTVITQFLE--FARGSVWVAHNAKFDIGFLRQACTDLGLDWPSPSVVDTLTL 138 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R S + +R H AL D+ DV +M Sbjct: 139 ARRVLDRSQVGSFKLSQLARYVGSPNRPAHRALDDAIATVDVLHYLMER 187 >gi|148377333|ref|YP_001256209.1| DNA polymerase III PolC [Mycoplasma agalactiae PG2] gi|148291379|emb|CAL58763.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae PG2] Length = 1459 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 2/188 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FDIETTGL K IIE GAV++ K Q F+ P + + Sbjct: 425 YVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGEVTQFFIKPQAKIGAFTTELTGITQQM 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S +D + IAHNAKFD F+ + + N + + I ++ Sbjct: 485 LDSEGLSIKDGLQRIYDCLDG--KVAIAHNAKFDFNFLKEQFRLNNVPFPNVTVIDTLIA 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R+ L + R G+ H D+ +L++V++ ++ + N + Sbjct: 543 SRIGFPNYKRHKLEDVTSRLGVVYDPNVAHRGDYDAKVLANVWVNIISELNSKNIFTFED 602 Query: 189 EDRFFKEE 196 F + Sbjct: 603 LGNFTSND 610 >gi|325661635|ref|ZP_08150259.1| hypothetical protein HMPREF0490_00993 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472162|gb|EGC75376.1| hypothetical protein HMPREF0490_00993 [Lachnospiraceae bacterium 4_1_37FAA] Length = 238 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 69/223 (30%), Gaps = 8/223 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI+ + FD+ETTGL + D IIEIGAV++ D T+R F FL P + Sbjct: 1 MIKT----YVAFDLETTGLSEERDSIIEIGAVKVTDGKVTDR-FMEFLKPAEEISPMITQ 55 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + + + I + HN FD F+ + Sbjct: 56 ITGITNEMVAHARNTKEVIDDFMG---FCGEEVLLGHNILFDYKFMKRYACKYQHSFERR 112 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ K SR+ + + L + L Sbjct: 113 GIDTLKIARKVHKDLESRSLEALCVHYQIKNDAAHRAYHDALATAKLYHCLGHYFEEKEP 172 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 F + + KE+ T L++ E+L+ Sbjct: 173 NLFVPEPLFYQPRKEQPATEKQKRYLEKLCGWHRIAVPEDLEA 215 >gi|227890229|ref|ZP_04008034.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] gi|227849231|gb|EEJ59317.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] Length = 1432 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 9/215 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH---HPLSDTTINLTSIT 470 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R + + + Sbjct: 471 DEMVGAADDEKDVIKKFKEFYGDRPLCGHNVQFDVGFVNAALRRAGLEEITQPVVDTLEV 530 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ ++ F Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFNER---FHEA 585 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + + K K + +E L Sbjct: 586 DLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKN 620 >gi|289423581|ref|ZP_06425382.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] gi|289156083|gb|EFD04747.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] Length = 174 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 7/166 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IV D+ETTGLD + IIEIG E+ T + + P G S L I++ Sbjct: 10 YIVVDLETTGLDPLQGHEIIEIGVTEIKKGDITLN-YSRLIKPKGI-ISSFITNLTHISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ + + + +F ++ + + IAHNAKFD+ F+N L+++ +P+ + Sbjct: 68 EMVEGEKTLEEVLPKFREYIGD--SVLIAHNAKFDIPFLNYYLEKMGLEPIKNYICTLEM 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + +P + L++ C YGI + H A D+H + +++K Sbjct: 126 LKMNKMYPLKKKSLSAACDFYGIK--NVEAHRAYADTHATALLFLK 169 >gi|268319259|ref|YP_003292915.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785] gi|262397634|emb|CAX66648.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785] Length = 1432 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 9/215 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH---HPLSDTTINLTSIT 470 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R + + + Sbjct: 471 DEMVGAADDEKDVIKKFKEFYGDRPLCGHNVQFDVGFVNAALRRAGLEEITQPVVDTLEV 530 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ ++ F Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLLDAFNER---FHEA 585 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + + K K + +E L Sbjct: 586 DLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKN 620 >gi|185178976|ref|ZP_02964733.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|225551037|ref|ZP_03771983.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209258|gb|EDU06301.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|225378852|gb|EEH01217.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 1442 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 4/205 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL D IIE GA+ + + + Q F+ P ++ + L I E Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNLTNINQE 467 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D + + + F N +AHN + + IDTL Sbjct: 468 MVNDAIDEKTALLKIKEIF--DNHILVAHNGISFDINFINQRLLKWGLKPLKNPSIDTLM 525 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I+R +P + L ++CK+Y + + H A D+ +L+DV+ M +F Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIMKNSLVN-DFEIINL 584 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 K + + N S Sbjct: 585 NQINTKLQSLMLKNRSFGNWVNLYI 609 >gi|315924481|ref|ZP_07920702.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263] gi|315622185|gb|EFV02145.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263] Length = 1442 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 84/212 (39%), Gaps = 12/212 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL + D IIEI AV++ + TFQ F+ P+ R + +L ITD+ Sbjct: 427 FVFFDLETTGLYAGRDAIIEIAAVKIKN-KHVLDTFQTFVNPH-RPIPQKITELTSITDQ 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + F DF + AHNA FD+GF++ L+R ++ Sbjct: 485 MVAQGKEEEAAVRAFLDFCDG--KILAAHNASFDMGFMSIALERYGIPNTITYVDTLPMA 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + N I H A+ DS + +++++M + + + Sbjct: 543 RTLIPDIARHNL---KKLASYFKIDMGHHHRAIDDSICSAKIFVRLMGLAEKQHCDRAAD 599 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 +R + I +R + ++ Sbjct: 600 LNRLM-----RLEQIIKTERPYHVIIYAKDQD 626 >gi|51892650|ref|YP_075341.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM 14863] gi|51856339|dbj|BAD40497.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM 14863] Length = 1475 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 85/237 (35%), Gaps = 25/237 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG D IIE+GAV +FQ F+ P + PE KL IT + Sbjct: 454 FVVLDIETTGFSPIGDDIIELGAVRCRGGEIV-DSFQSFVRP-TKPVPPEVQKLTNITPD 511 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P + F+ F + A +AHNA+FD F+ Q+ + + Sbjct: 512 MLEGAPEAAEALRAFFQFVGD--AIVVAHNAQFDYSFLRYHRQKYLGEEFANPVLDTLTL 569 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS--QINFGFK 186 + L +L K + H A D+ + V +K++ + Sbjct: 570 ARAVLPHMRSHSLAALTKELQVP--LVDHHRADADAKTAAMVLMKLLERAEGVETVADLN 627 Query: 187 TNEDRFFKEEKKTVPNISLLKRDK-----------------PLFTRITKEELDEHDK 226 E+ + L+K R+ + EL++H + Sbjct: 628 RLTKGINVEQLRPYHTTVLVKTQAGMKNLYKLISLSHIEYFNRTPRVPRSELEKHRE 684 >gi|288800441|ref|ZP_06405899.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] gi|288332654|gb|EFC71134.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] Length = 285 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 77/209 (36%), Gaps = 7/209 (3%) Query: 2 IRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ N R +VFD+ETTGLD NDRII+I +++ K R +F+ P + E Sbjct: 1 MKLNLQRPLVVFDLETTGLDLVNDRIIQISYIKVHPDGKEERE-NLFINPQ-KPIPQEVE 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L IT++ +KD P+F+ I + ++ F + N + Sbjct: 59 ALTHITNDMVKDAPTFAEIAQKLYEKFTGCDFAGFNSNHFDIPMLAEEFSRAGLSYDFSR 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 S+++D I + + ++ A Y +M + Sbjct: 119 SKLVDAQVIFHK----MERRNLAAAYKFYCGRKMEDDFNAHRADEDTEATYRVLMGQIER 174 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRD 209 + + +R + + S R+ Sbjct: 175 YSAEQQEEAERILPNDIAALAEFSTNNRN 203 >gi|163782848|ref|ZP_02177844.1| DNA polymerase III epsilon subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159881969|gb|EDP75477.1| DNA polymerase III epsilon subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 194 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 6/168 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG D + II+IGAV + T TF + P G +L GIT+ Sbjct: 10 FVAIDVETTGFDVNHAEIIDIGAVRVEGGIIT-ETFSSLVDP-GFFIPDRIKELTGITNA 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + F DF + + + H+ D+ FI+ + + I Sbjct: 68 MLVGSPKMIEVLPRFMDFIGD--SIIVGHHISQDIKFIDKYTRLYGEGKFRRPYICTLEL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + R+ L + + ++ + H AL D+ + + V+++++ Sbjct: 126 SRKLLPSLPRHSLKEMADYF--SVDYSRLHRALDDALITAQVFLELLN 171 >gi|119898701|ref|YP_933914.1| DNA polymerase III epsilon subunit-like protein [Azoarcus sp. BH72] gi|119671114|emb|CAL95027.1| DNA polymerase III epsilon chain-like protein [Azoarcus sp. BH72] Length = 734 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 8/166 (4%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGL+ + D II+IGAV +L+ + F+ + P R E+ ++HGIT + Sbjct: 546 VFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDP-CRPLPEESARVHGITAD 604 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L +P ++ F + +AHNA FD+ F+ + + D + L Sbjct: 605 MLAGQPVIEAVLPSFHA--FAADTVLVAHNAAFDMRFLQ-LKEDLTGLRFDQPVLDTLLL 661 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 A + L ++ +R GIT +H AL D+ + ++V++K+ Sbjct: 662 SAVIHPNQDSHRLEAIAERLGIT--VVGRHTALGDAMVTAEVFLKL 705 >gi|332143320|ref|YP_004429058.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|327553342|gb|AEB00061.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str. 'Deep ecotype'] Length = 715 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 4/116 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG ++ +RI EIG V+L+ + +R FQ L P R+ +L GI+D+ Sbjct: 543 YVVVDIETTGGNNSYNRITEIGMVKLVGGKEVDR-FQTLLNPQ-RRIPSSITRLTGISDD 600 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + D P F+ + ++A ++AHN FD GFI E R+ + P Sbjct: 601 MVADAPLFAEVADHIAS--FTEDAVFVAHNVNFDYGFIKQEFARLEQSFRRPKMCT 654 >gi|160947401|ref|ZP_02094568.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270] gi|158446535|gb|EDP23530.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270] Length = 1431 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 7/193 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL + I EIGAV + F + P ++ S E ++ GIT+E Sbjct: 417 FVVFDIETTGLSHLKNNITEIGAVRVESGKIV-DVFNGLVNPE-QEISQEITEITGITNE 474 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + DKP S I +F + +NA ++AHNA+FD+ FI +R+N + + Sbjct: 475 MVADKPLISEIMPKFLE--FSKNAVFVAHNAEFDISFIKTNCKRLNLEFNPTFIDTMGFA 532 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 A H + LN+LCK G+ + H A D+ + + ++++ + F N Sbjct: 533 RAILPH-LKNHKLNTLCKELGVN--LLNHHRASFDAEACAGILLELIKIVEKEGKVFDEN 589 Query: 189 EDRFFKEEKKTVP 201 + + Sbjct: 590 INNIETKWPVAKN 602 >gi|91789989|ref|YP_550941.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666] gi|91699214|gb|ABE46043.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666] Length = 729 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 8/175 (4%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGL+ D II+IGA+ +++ N T + P R E++ +HGIT++ Sbjct: 541 VFDTETTGLEPSAGDEIIQIGAIRIVNGRLLRNETIDQLIDPRRRLKP-ESIAIHGITED 599 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K +P+ F +F + +AHNA FD+ F+ + + L Sbjct: 600 MVKGQPTIEQALPAFHEFCED--TVLVAHNAAFDMRFLQ-LKEASTGIVFRQPVLDTLLL 656 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 A + L ++ R GI + R H AL D+ + ++++KM+ +Q N Sbjct: 657 SALLHPNQESHRLEAIAGRLGINVIGR--HTALGDAIVTGEIFLKMIPLLAQQNI 709 >gi|312978245|ref|ZP_07789989.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus crispatus CTV-05] gi|310894963|gb|EFQ44033.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus crispatus CTV-05] Length = 836 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH---HPLSEQTINLTSIT 474 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R + + Sbjct: 475 DEMVGAADDEAVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTLEV 534 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 SR+ L+SL K+Y +++ H H A D+ + K++ ++ N Sbjct: 535 SRLLHPEQSRHTLDSLAKKYNVSLEH--HHRANQDAEATGYLMFKLLDAFNKKYHENNLN 592 Query: 189 EDRFFKEEKKTVPNISLL 206 + + Sbjct: 593 NLNGYAAHGEVYKRARPS 610 >gi|291456364|ref|ZP_06595754.1| exonuclease, DNA polymerase III, epsilon subunit family [Bifidobacterium breve DSM 20213] gi|291381641|gb|EFE89159.1| exonuclease, DNA polymerase III, epsilon subunit family [Bifidobacterium breve DSM 20213] Length = 235 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 76/212 (35%), Gaps = 15/212 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG I EIGAV + ++ FQ + P + L GITD Sbjct: 34 YVALDLETTGFYPNRCAITEIGAVRVRGGRVVDQ-FQQLINP-LCPIPRQITALTGITDA 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + D + +F + + N + HN FD+ F++ + I + Sbjct: 92 MVADHDPIDGVLPQFISWLADSNAAAETEPIVGHNVSFDLRFLDYNTRHIAGCGFACADY 151 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 S + L L R+GI +H AL D+ + M ++ Sbjct: 152 DTMQISRALFPKQSHHRLADLIVRFGIA--DNEEHRALSDAIQTQQCFEWM------RHY 203 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 + +E + ++ N + + + + R Sbjct: 204 VSEHHESSTIRWKQAPAKNSTEILHQQLVVQR 235 >gi|228992309|ref|ZP_04152240.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM 12442] gi|228767334|gb|EEM15966.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM 12442] Length = 315 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 64/161 (39%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + NDRII++ AV ++ F F+ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDRIIQVAAVRYRNHEL-ADQFVSFVNPE-RFIPNRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F E AHNA FD+ F+ + + + I Sbjct: 68 RVSDAPTIQEVLPLFLAFLGEDTIV--AHNASFDMRFLKSNAKMLRLPEPKNIVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 R + + L +L + GI +S + + + Sbjct: 126 AKRYMKHARNHKLETLKRMLGIRLSSHNALDDCITCAAVYQ 166 >gi|171920237|ref|ZP_02690314.2| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902634|gb|EDT48923.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 1442 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 80/205 (39%), Gaps = 4/205 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL D IIE GA+ + + + Q F+ P ++ + L I+ E Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNLTNISQE 467 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + + + F N +AHN + + IDTL Sbjct: 468 MVNNAIDEKTALLKIKEIF--DNHILVAHNGINFDINFINQRLLKWGLEPLKNPSIDTLM 525 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I+R +P + L ++CK+Y + + H A D+ +L+D + M +F Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADAFKIMKNSLVN-DFEIINL 584 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 K + + N S Sbjct: 585 NQINTKLQSLMLKNRSFGNWVNLYI 609 >gi|257090540|ref|ZP_05584901.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188] gi|256999352|gb|EEU85872.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188] gi|315578691|gb|EFU90882.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0630] Length = 929 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYDFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSTF 201 >gi|268316801|ref|YP_003290520.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252] gi|262334335|gb|ACY48132.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252] Length = 565 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 58/213 (27%), Positives = 85/213 (39%), Gaps = 9/213 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG DRIIE+ AV + R F + P GR P +L GIT Sbjct: 8 FVVVDTETTGSGPA-DRIIELAAVRVQGGRIVER-FATLINP-GRSVPPFITRLTGITTA 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L +PS + +F DF + +AHN FD + AELQRI + Sbjct: 65 MLVGRPSADEVLPDFLDFLGD--GVLVAHNLAFDRKMLEAELQRIGLAWPGNPALCTLRL 122 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG-SQINFGFKT 187 R L+ L + Y I ++H AL D+ + V ++++ Q Sbjct: 123 ARRLLPGLPAKGLDGLIRFYQIP--VENRHRALGDAEATAHVLLRLLEEARRQYGIDTLE 180 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP-LFTRITKE 219 F ++ N S L R + L R+ + Sbjct: 181 ALLTFQQQRYPQYKNASPLVRLRETLLPRLPEA 213 >gi|171920838|ref|ZP_02932008.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|171903036|gb|EDT49325.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 13 str. ATCC 33698] Length = 1442 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 4/205 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL D IIE GA+ + + + Q F+ P ++ + L I E Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNLTNINQE 467 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D + + + F N +AHN + + IDTL Sbjct: 468 MVNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLENPSIDTLM 525 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I+R +P + L ++CK+Y + + H A D+ +L+DV+ M +F Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIMKNSLVN-DFEIINL 584 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 K + + N S Sbjct: 585 NQINTKLQSLMLKNRSFGNWVNLYI 609 >gi|225550655|ref|ZP_03771604.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379809|gb|EEH02171.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 1442 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 4/205 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL D IIE GA+ + + + Q F+ P ++ + L I E Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNLTNINQE 467 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D + + + F N +AHN + + IDTL Sbjct: 468 MVNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLENPSIDTLM 525 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I+R +P + L ++CK+Y + + H A D+ +L+DV+ M +F Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIMKNSLVN-DFEIINL 584 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 K + + N S Sbjct: 585 NQINTKLQSLMLKNRSFGNWVNLYI 609 >gi|77920206|ref|YP_358021.1| DNA polymerase III subunit [Pelobacter carbinolicus DSM 2380] gi|77546289|gb|ABA89851.1| DNA polymerase III subunit [Pelobacter carbinolicus DSM 2380] Length = 222 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 7/166 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+G+ + DR IEIGAV ++ +R FQ + P R S GI++ Sbjct: 20 VVLDFETSGMSPVQGDRAIEIGAVRIVGGQIADR-FQSLMNPGCR-ISSFIESFTGISNA 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + + + F DF + A +AHNA FD F++ + D +L Sbjct: 78 MVQAAPPATQVMAAFHDFIGD--APLVAHNASFDRRFLD--AELQRIDRCRRQEFACSLL 133 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR +P S N + Y + H AL D+ + + ++++M Sbjct: 134 VARRVYPDSPNHKLATLVSYKGLPTDGCFHRALADAEMTAHLWLRM 179 >gi|260906794|ref|ZP_05915116.1| hypothetical protein BlinB_15797 [Brevibacterium linens BL2] Length = 581 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 73/203 (35%), Gaps = 3/203 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG + I EIGAV+ FQ + P SP +L GIT Sbjct: 31 FVIVDLETTGTTAGKSEITEIGAVKTRGGEVLGE-FQSLVKPEESVISPFVARLTGITHA 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D PS S+ F +F A +AHNA FD+GFI + ++++ P+ + Sbjct: 90 MVDDAPSIRSVLPSFLEFCVG--AVLVAHNAPFDIGFIRSACEKLDYHWPQPTVLDTVTL 147 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R + H AL D+ +V +++ Sbjct: 148 SRRVVSRDEVRNHKLSTLAAHFGTEVSPDHRALSDAKATGEVLHRVLERFGGYGITTLEE 207 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 + S L + P Sbjct: 208 LATVRQAGWAKRQAKSHLAKGVP 230 >gi|256375516|ref|YP_003099176.1| hypothetical protein Amir_1378 [Actinosynnema mirum DSM 43827] gi|255919819|gb|ACU35330.1| DNA polymerase III, epsilon subunit [Actinosynnema mirum DSM 43827] Length = 578 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 4/174 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG + D I EIGAV++ F + P R P+ + L GIT Sbjct: 31 FVVFDLETTGPRAAEDGITEIGAVKVRGGRVIGE-FGTLVDPE-RGIPPQIVALTGITQN 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P +S+ F + + A +AHN+ FDVGF+ A +R P + Sbjct: 89 MVTGAPVLASVLPAFLE--FAEGAVLVAHNSGFDVGFMKAACERHGYAWPKPPVVCTVKL 146 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R + H AL+D+ +V +++ + Sbjct: 147 ARRVLSREEAPSCKLSALSALFGVPEAPNHRALVDARATVEVLHRLLERVGSVG 200 >gi|225018411|ref|ZP_03707603.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum DSM 5476] gi|224948829|gb|EEG30038.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum DSM 5476] Length = 1453 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 5/181 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL+++ +R+ EIGAV L + T + F+ P + P+ +L GITD Sbjct: 434 FVVFDTETTGLNAQTERLTEIGAVVLKNGEIT-EEYDEFVNPE-KPIPPKITELTGITDS 491 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ F+ + IAHNA FD+GF+ A R + Sbjct: 492 MVADAPTEKEALERFFA--FAKGRILIAHNANFDMGFLAAAAARHGLSCDFTYIDTLPIV 549 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + D + G HR+ A + + ++V +++ + Sbjct: 550 RTLFPTLRNHKLDTVVKHLKLGDFNHHRACDDAKILGLVFAEVAKRLIQEKGVADIADIN 609 Query: 188 N 188 N Sbjct: 610 N 610 >gi|210612665|ref|ZP_03289413.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787] gi|210151467|gb|EEA82475.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787] Length = 234 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 11/174 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI+ +VFD+ETTGLD +ND IIEIGA+++ + T+R F FL P+ SP Sbjct: 1 MIKT----YVVFDLETTGLDVENDNIIEIGALKVREGKVTDR-FMEFLKPD-MPISPMIT 54 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + GIT+E +K+ ++ +F +F + + HN FD F+ + + Sbjct: 55 GITGITNEMVKNARDTKTVIRDFVNFCED--HILVGHNIMFDYKFMKKYASQYGESFEKK 112 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++ K S++ I + + H A D+ + VY M Sbjct: 113 GIDTLKIARKVHKDLESKSLE---ALCEHYQIVNTAAHRAYHDALATAKVYHMM 163 >gi|209554353|ref|YP_002284813.1| DNA polymerase III PolC [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209541854|gb|ACI60083.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 1442 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 4/205 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL D IIE GA+ + + + Q F+ P ++ + L I E Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNLTNINQE 467 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D + + + F N +AHN + + IDTL Sbjct: 468 MVNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLENPSIDTLM 525 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I+R +P + L ++CK+Y + + H A D+ +L+DV+ M +F Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIMKNSLVN-DFEIINL 584 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 K + + N S Sbjct: 585 NQINTKLQSLMLKNRSFGNWVNLYI 609 >gi|195867849|ref|ZP_03079848.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660426|gb|EDX53684.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 1442 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 4/205 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL D IIE GA+ + + + Q F+ P ++ + L I E Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNLTNINQE 467 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D + + + F N +AHN + + IDTL Sbjct: 468 MVNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLENPSIDTLM 525 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I+R +P + L ++CK+Y + + H A D+ +L+DV+ M +F Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIMKNSLVN-DFEIINL 584 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 K + + N S Sbjct: 585 NQINTKLQSLMLKNRSFGNWVNLYI 609 >gi|147677749|ref|YP_001211964.1| hypothetical protein PTH_1414 [Pelotomaculum thermopropionicum SI] gi|146273846|dbj|BAF59595.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 937 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 8/105 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI++ +V D+ETTGLD +DRIIEIG V L D + + P GR + Sbjct: 1 MIKE----IVVCDLETTGLDPLSDRIIEIGLVRLKDLKIV-DIYHTMVNP-GRPLPLKIK 54 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 L G+ D L P+FS + + F + A HN +FD+GF Sbjct: 55 NLTGLDDSDLASAPAFSGVREKVLGFIGD--APIAGHNIRFDMGF 97 >gi|56963828|ref|YP_175559.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus clausii KSM-K16] gi|56910071|dbj|BAD64598.1| ATP-dependent DNA helicase DinG [Bacillus clausii KSM-K16] Length = 942 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 93/217 (42%), Gaps = 12/217 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTG + ++I+IGAV++ + T+R F F+ P G P +L GITD Sbjct: 5 FVVIDLETTGNSPDQGAKMIQIGAVKVEGCTITDR-FSTFVDP-GCSIPPFITELTGITD 62 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++ P F I ++ F + +AHN FD GF+ A+L+ + Sbjct: 63 KDVEGAPVFREIATDLLAFMEGSS--LVAHNVPFDKGFLEAQLETEGLRLPKCCQFDTVE 120 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 L+ L + H H A D+ + ++++IK++ ++ Sbjct: 121 LSRVLLPTQESYKLSELSSSL--DMDHDRPHRADSDAEITAELFIKLLHKLERLPL---V 175 Query: 188 NEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELD 222 + K + +L R + + ++ ++E + Sbjct: 176 TLQSLEQVAKGLKSDWDVLTRPLIQKKWMKVDEDERE 212 >gi|217978759|ref|YP_002362906.1| DNA polymerase III subunit epsilon [Methylocella silvestris BL2] gi|217504135|gb|ACK51544.1| Exonuclease RNase T and DNA polymerase III [Methylocella silvestris BL2] Length = 222 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 4/168 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD ETTGLD + D II I AV++ + T+ F+ + P R + EA+K+H + + Sbjct: 33 VAFDCETTGLDPRRDDIITIAAVKIRGNRILTSERFEAVIRPEAR-MNAEAIKVHRLREA 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ I +F F + ++ + + ++ L +PL + Sbjct: 92 DVEAGKRIEKIMPQFLHFIGGRPLIGYYLEFDVRMIDKYLLGLLGIELPNPLIEVSNLYY 151 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P + DL+ + + +H A D+ + + +YIK+ Sbjct: 152 ERKYGDAPPGATIDLSFAAILKDLDLPMLDQHDAFNDALMTAMIYIKL 199 >gi|291542732|emb|CBL15842.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus bromii L2-63] Length = 1452 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 5/203 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FDIETTGL + D+I EIGAV++ + T TF F P + +L GITD+ Sbjct: 435 FICFDIETTGLSAARDKITEIGAVKVENGVIT-DTFSTFANPE-MPIPQKITQLTGITDD 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD PS S F + + +AHNA FD FI + + ++ S +S Sbjct: 493 MVKDAPSQSEAVGAFLE--FAGDNVLVAHNAPFDTSFIAKACEDMGREYNYTSIDTVAIS 550 Query: 129 IARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 A + + D + R G HR+ A + + + ++ ++ Sbjct: 551 RAILTDIKNCKLDTVAKFLRLGDFNHHRATDDAEMLARIFINLCQRLTDDYGITKTNDIN 610 Query: 188 NEDRFFKEEKKTVPNISLLKRDK 210 + +K + +L ++K Sbjct: 611 TKIAGGDFKKLPTYHQIILVKNK 633 >gi|313665237|ref|YP_004047108.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma leachii PG50] gi|312949309|gb|ADR23905.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma leachii PG50] Length = 1480 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 6/207 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ KM + FD+ETTGL + D IIE GA+E + + + + P + K Sbjct: 428 LKDAKM--VFFDLETTGLSPELDEIIEFGAIEYNFKTGERKKIDILIKPKAKLKD-FTKK 484 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L I +E L++KP F + + A +AHNA FD F++ Q++ L+ + Sbjct: 485 LTNINEEMLENKPGIEVAFKQINQIIKD--AILVAHNANFDYTFLSHWSQKLGYGKLENT 542 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQ 180 I + L SL KR I+ H D+ +L+D+Y +M+ + Sbjct: 543 IIDTLTISRIIYPELKSHRLGSLAKRVNISYDPSVAHRGDYDADILADIYERMLDETRKK 602 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLK 207 ++ D+ N K Sbjct: 603 TKITIDSDWDKINPLNNIDNLNYHKNK 629 >gi|153815178|ref|ZP_01967846.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756] gi|145847437|gb|EDK24355.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756] Length = 279 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 78/234 (33%), Gaps = 30/234 (12%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ I FD+ETTGLD N+ IIEIGA+++ D + R F F+ P + Sbjct: 35 MLKS----YIAFDLETTGLDPMNNEIIEIGALKVRDGKVSER-FMEFIKPQELISPAITG 89 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 D +P+ S I + I HN FD F R Sbjct: 90 LTGISNDMVASARPARSVITDFID---FCEEDILIGHNIIFDYSFTKCTAAREGLPFEKM 146 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ S++ I +++ H A D+ + +Y + Sbjct: 147 GIDTLKIAKKVHPELESKSLS---ALCEHYKIENKAAHRAYFDALATAKLYQTL------ 197 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 +F+ + S L T ++L ++ L KN Sbjct: 198 ---------SHYFEPDNPKTFKPSQLTYKIRKPQPATPKQLAL----LERLTKN 238 >gi|228998363|ref|ZP_04157954.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17] gi|228761284|gb|EEM10239.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17] Length = 315 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 63/161 (39%), Gaps = 4/161 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + NDRII++ AV ++ F F+ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDRIIQVAAVRYRNHEL-ADQFVSFVNPE-RFIPNRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F E AHNA FD+ F+ + + I Sbjct: 68 RVSDAPTIQEVLPLFLAFLGEDTIV--AHNASFDMRFLKSNANMLRLPEPKNIVIDTVFL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 R + + L +L + GI +S + + + Sbjct: 126 AKRYMKHAPNHKLETLKRMLGICLSSHNALDDCITCAAVYQ 166 >gi|238917782|ref|YP_002931299.1| DNA polymerase [Eubacterium eligens ATCC 27750] gi|238873142|gb|ACR72852.1| DNA polymerase [Eubacterium eligens ATCC 27750] Length = 233 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 4/98 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + DIETTGL+ DRIIE+G + D T + + + P G S +L GI + Sbjct: 4 RYVALDIETTGLNPAVDRIIEVGMARVEDGQITQK-YSTLVYP-GISVSERITELTGIHN 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 E L KP I E +F + + HN FD F Sbjct: 62 EELTGKPRIEDIIGEITEFIGD--WPVLGHNVIFDFSF 97 >gi|209809036|ref|YP_002264574.1| exonuclease [Aliivibrio salmonicida LFI1238] gi|208010598|emb|CAQ80976.1| exonuclease [Aliivibrio salmonicida LFI1238] Length = 227 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 38/97 (39%), Positives = 50/97 (51%), Gaps = 5/97 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L + +R FQ + P G + S GIT+ Sbjct: 31 VVLDFETTGLSPNQGDRAIEIGAVKLENGVIVDR-FQKLMNP-GFRVSSFIANYTGITNA 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 L +++ EF DF N +AHNA FD F Sbjct: 89 MLMGADDCATVMHEFADFIQGCN--LVAHNASFDQRF 123 >gi|227501930|ref|ZP_03931979.1| possible exonuclease [Corynebacterium accolens ATCC 49725] gi|227077314|gb|EEI15277.1| possible exonuclease [Corynebacterium accolens ATCC 49725] Length = 1118 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 58/231 (25%), Positives = 95/231 (41%), Gaps = 22/231 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D ETTG S DR+IEIG V L + T++ + P R + H IT Sbjct: 6 RYAVVDFETTGFGS-TDRVIEIGVVLLDHNREVESTWETLVQPQ-RDIPNSFV--HRITP 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIIDT 126 + D P F + EF++ N + AHNA F+V F+ E + + + ++DT Sbjct: 62 TDVVDAPLFGEVAGEFFELLNGRTVV--AHNAPFEVRFLQREFSNLGVAWPNYGAWVVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + ++ +P L + GIT + H AL D+ ++++ +++ G+ Sbjct: 120 KRLFQQTYPGEGTTLEHALEVVGIT--NARPHSALADALATAELFAQLVSQGT------- 170 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD--KTIQTLGKNA 235 D T+P R L E+L H + + L A Sbjct: 171 ---DVVISSRAITLPPHEFPARGALLPRTALAEDLT-HKRGEWLARLADTA 217 >gi|212635482|ref|YP_002312007.1| DNA polymerase III [Shewanella piezotolerans WP3] gi|212556966|gb|ACJ29420.1| DNA polymerase III [Shewanella piezotolerans WP3] Length = 222 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 69/172 (40%), Gaps = 7/172 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL + DR IEIGAV+L +R FQ + P R + Sbjct: 25 IVLDFETTGLSPNQGDRAIEIGAVKLQHGIVVDR-FQELMNPGFRISGFIESYTGISNQM 83 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P + F DF + N AHNA FD F++ + + ++ Sbjct: 84 LNNAAPC-EEVMERFADFIADYNMV--AHNASFDQRFLD--AELNSIGREYRGEFACSML 138 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 IARR + + N Y H AL DS + +D+++ M+ + Sbjct: 139 IARRLYQEAPNHKLGSLINYKQIKHDGVFHRALADSEMTADLWLVMLNDLKR 190 >gi|238852616|ref|ZP_04643026.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus gasseri 202-4] gi|238834762|gb|EEQ26989.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus gasseri 202-4] Length = 1432 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 49/215 (22%), Positives = 82/215 (38%), Gaps = 9/215 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH---HPLSDTTINLTSIT 470 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R D + + Sbjct: 471 DEMVGAADDEKDVIKKFKDFYGDRPLCGHNVQFDVGFVNAALRRAGLDEISQPVVDTLEV 530 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ N F Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLL---DAFNARFHEA 585 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + + K K + +E L Sbjct: 586 DLGKMNDYAKYGQVYKRAKPSHVSVLALNQEGLKN 620 >gi|225180860|ref|ZP_03734308.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT 1] gi|225168341|gb|EEG77144.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT 1] Length = 269 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 7/175 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGI 65 R I+FD ETTG + D II I AV + + ++ F + P+ R L GI Sbjct: 77 RYIIFDTETTGFYPYQGDEIINIAAVVIENGEIKEDQIFDELVNPH-RSIPQAVCDLTGI 135 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD+ + DK S+ S+F DF + + +AHNA+FD+ F+N +L + + I Sbjct: 136 TDDMVADKCGICSVLSDFLDFIGD--SVLVAHNAEFDLAFLNIKLNWYTQTEIYNPVIDT 193 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DL++L + + + R +H AL DS + +++++ + + Sbjct: 194 YKLGRALYPQLLSHDLDTLIRHH--RVKERPRHTALGDSLMTAEIFLDYLKKLEK 246 >gi|332799219|ref|YP_004460718.1| DNA polymerase III subunit alpha [Tepidanaerobacter sp. Re1] gi|332696954|gb|AEE91411.1| DNA polymerase III, alpha subunit [Tepidanaerobacter sp. Re1] Length = 1422 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 7/197 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTGL ND IIEIGAV++L+ +R F F+ P R + L GIT++ Sbjct: 408 FVVVDIETTGLCFDNDEIIEIGAVKILNNEIIDR-FSSFIKPQ-RLIPTNIINLTGITND 465 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK + F +F + ++AHNA+FD GFI E ++ + L+ Sbjct: 466 MLKTARPIEKVLPSFMEFLGD--GVFVAHNAEFDSGFIRREASKLGIPFKNNILDTLALA 523 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L++L K I + S H A+ D+ + + ++++ ++ + Sbjct: 524 -RIIFSKLKNHRLDTLAKELNIKM--GSHHRAIDDAKTAALILQELLIKVNEAGINNLSQ 580 Query: 189 EDRFFKEEKKTVPNISL 205 + +K +K S Sbjct: 581 INDIYKLKKGATNLSSY 597 >gi|89902537|ref|YP_525008.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118] gi|89347274|gb|ABD71477.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118] Length = 722 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 85/175 (48%), Gaps = 8/175 (4%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGL+ + D II+IGA +++ +F+ + P+ R S ++++HGIT + Sbjct: 534 VFDTETTGLNPAEGDEIIQIGAARIVNKKILRQESFEQLVNPD-RLISAASVQIHGITQD 592 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P + F Q+ +AHNA FD+ F+ + P LS Sbjct: 593 RVIGQPRIGEVLPAFHA--FAQDTVLVAHNAAFDMKFLQLKEAATGLAFHQPVLDTLLLS 650 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + L ++ +R+ IT +H AL D+ + ++V+++++ + + Sbjct: 651 AVVHPN-QESHRLEAIAERFNIT--VLGRHTALGDAMVTAEVWLRLIPLLNAMGI 702 >gi|332298225|ref|YP_004440147.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM 12168] gi|332181328|gb|AEE17016.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM 12168] Length = 186 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 6/168 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTGL + +R+IEIGA+ R + + + P G+ P A ++ ITD+ + Sbjct: 25 AFDTETTGLKPEYERLIEIGAIRFDKNGIIAR-YDILINP-GKPIPPGASAINNITDDMV 82 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ P S+ +F F + + +AHNA FD+ F+N EL+R +PL + Sbjct: 83 RNCPLIESVLPDFLTFVRD--SVLVAHNAGFDLSFVNKELERSGFNPLKNNAADTVHLAR 140 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 R + L SL +GI R+ H A D+ + +V+++ + G Sbjct: 141 SRFPQLPNHKLQSLAAYFGID--VRNAHRAEDDARVCMEVFLRCLNAG 186 >gi|188524415|ref|ZP_03004436.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273773|ref|ZP_03206307.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|195659873|gb|EDX53253.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249528|gb|EDY74310.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 1442 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 81/205 (39%), Gaps = 4/205 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL D IIE GA+ + + + Q F+ P ++ + L I+ E Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNLTNISQE 467 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D + + + F N +AHN + + IDTL Sbjct: 468 MVNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLKNPSIDTLM 525 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I+R +P + L ++CK+Y + + H A D+ +L+DV+ M +F Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIMKNSLVN-DFEIINL 584 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 K + + N S Sbjct: 585 NQINTKLQSLMLKNRSFGNWVNLYI 609 >gi|269215783|ref|ZP_06159637.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122] gi|269130733|gb|EEZ61809.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122] Length = 291 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 5/166 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTGL+ D IIE+ A+ + +T FQ + G + A Sbjct: 128 YVVVDIETTGLNPNKDEIIELAAIRVRGGRET-DAFQCLVRCGGELSDAIAKLTGLSHSR 186 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + F +F ++ +AHNA+FD+GFI + + ++ D D + Sbjct: 187 LMAEGLILENALMNFLEFVSD--DLIVAHNAEFDIGFIQSACEELDWDDFDNDYLDTLAL 244 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++ S + L+SL +R + +R H AL D L + +K+ Sbjct: 245 ARKKLPQISDHRLSSLAERLHLE--NRQPHRALSDCRLTHCLLVKL 288 >gi|317502363|ref|ZP_07960529.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089964|ref|ZP_08338855.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896236|gb|EFV18341.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium 8_1_57FAA] gi|330403102|gb|EGG82665.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium 3_1_46FAA] Length = 245 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 78/234 (33%), Gaps = 30/234 (12%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ I FD+ETTGLD N+ IIEIGA+++ D + R F F+ P + Sbjct: 1 MLKS----YIAFDLETTGLDPMNNEIIEIGALKVRDGKVSER-FMEFIKPQELISPAITG 55 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 D +P+ S I + I HN FD F R Sbjct: 56 LTGISNDMVASARPARSVITDFID---FCEEDILIGHNIIFDYSFTKCTAAREGLPFEKM 112 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ S++ I +++ H A D+ + +Y + Sbjct: 113 GIDTLKIAKKVHPELESKSLS---ALCEHYKIENKAAHRAYFDALATAKLYQTL------ 163 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 +F+ + S L T ++L ++ L KN Sbjct: 164 ---------SHYFEPDNPKTFKPSQLTYKIRKPQPATPKQLAL----LERLTKN 204 >gi|298244280|ref|ZP_06968086.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] gi|297551761|gb|EFH85626.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] Length = 684 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 7/171 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR+IE+ V + + TFQ + P R+ P ++ GI+ E Sbjct: 101 FVVVDTETTGLRPGPDRVIEVAGVRMRNGEIL-DTFQSLVHPE-RRIPPFIVRFTGISPE 158 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P I +F F A + HN FDV F+ + P +DT+ Sbjct: 159 MLADAPKARDIMPDFLRFIEG--ATLVGHNLSFDVNFLT--HEAQLLGLPFPVEGLDTIL 214 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++RR P + + +Y + I ++H AL D+ + +DV+ +++ Sbjct: 215 LSRRLLPGLKRFKLDMVAQY-LQIQTHNRHRALGDAQVTADVFARLLERAK 264 >gi|188518224|ref|ZP_03003759.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188998138|gb|EDU67235.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 11 str. ATCC 33695] Length = 1442 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 81/205 (39%), Gaps = 4/205 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL D IIE GA+ + + + Q F+ P ++ + L I+ E Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNLTNISQE 467 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D + + + F N +AHN + + IDTL Sbjct: 468 MVNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLKNPSIDTLM 525 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I+R +P + L ++CK+Y + + H A D+ +L+DV+ M +F Sbjct: 526 ISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIMKNSLVN-DFEIINL 584 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 K + + N S Sbjct: 585 NQINTKLQSLMLKNRSFGNWVNLYI 609 >gi|15639630|ref|NP_219080.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025868|ref|YP_001933640.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp. pallidum SS14] gi|6014996|sp|O83649|DPO3E_TREPA RecName: Full=DNA polymerase III subunit epsilon gi|3322942|gb|AAC65617.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018443|gb|ACD71061.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp. pallidum SS14] gi|291060013|gb|ADD72748.1| DNA polymerase III subunit epsilon [Treponema pallidum subsp. pallidum str. Chicago] Length = 215 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 54/172 (31%), Positives = 79/172 (45%), Gaps = 4/172 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTGL ++ DRIIEIGAV R F + P+ R P+ K++ ITD+ L Sbjct: 17 AFDTETTGLKAEEDRIIEIGAVTFDRKGIIAR-FSTLIFPD-RAIPPDVSKINHITDDML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +KP F I S+F F +AHNA FDV F+NAEL K PL + Sbjct: 75 VNKPRFCEIVSDFSRFIKG--TVLVAHNANFDVEFLNAELSLCKKQPLSHKVVDTYAMAQ 132 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R+ ++ + H A D+ + +++ M+ ++ N Sbjct: 133 AVFPGLGRHQYRLQNLALQFGLTVHAAHRAEDDARVCMELFTTMIAHHAKQN 184 >gi|304373374|ref|YP_003856583.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1] gi|304309565|gb|ADM22045.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1] Length = 1457 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 76/206 (36%), Gaps = 3/206 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFD+ETTGL K + +IE GAV + + + + P + P + Sbjct: 403 RYVVFDLETTGLSPKFNELIEFGAVVWQNGQILEKH-EFLIKPKEKI--PSYISDLTGIT 459 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + S + QN+ +AHNA+FD G + + + L+ I Sbjct: 460 NQMIENEAISVEEAAIKIKQIFQNSILVAHNARFDYGCLVEFFKELELYELEQPVIDTLE 519 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 R++L L K I H D+ +L+ V+ + ++ + N Sbjct: 520 VSRFLAPTQKRHNLKELAKNASIHYDETESHRGGYDAEVLAKVWDQFLIKLIEKNIKDLN 579 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF 213 + ++ K + + Sbjct: 580 SLNQVGSNILDFKRRGLFSKEIRVIV 605 >gi|323701749|ref|ZP_08113420.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum nigrificans DSM 574] gi|323533285|gb|EGB23153.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum nigrificans DSM 574] Length = 930 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGLD +D IIEIG V+++D + FQ + P G + +L G+ D+ Sbjct: 5 FVALDLETTGLDCWSDDIIEIGMVKVIDGQE-RDFFQSLVRPGG-PLPVKIKQLTGLKDD 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F +I + F + + HN KFD F+ A + L ++ Sbjct: 63 DFQSAPWFQTIIPKILTFIGD--LPLVGHNIKFDRDFLAAACGHQLPNDL--YDTLELAR 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + PS R + + HR+ A + L+ + + ++ + Sbjct: 119 ILQPSAPSHRLGELCKIAGVEVNVEHRALDDARSSARLMLKLLSNLTDTEPEVVWQLSHL 178 Query: 189 EDRFFKEEKKTVPNIS 204 IS Sbjct: 179 LREAGSAWHPVFQEIS 194 >gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabiei 87.22] gi|260650992|emb|CBG74110.1| putative exonuclease [Streptomyces scabiei 87.22] Length = 331 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 8/203 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + + P P + +HG+T + Sbjct: 22 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPER---DPGPVWIHGLTSD 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I EF + +AHNA FD I E R + R+ Sbjct: 78 VLEGAPLFRDIAQEFSARLAD--RVLVAHNAVFDWSMIAREYARAETEAPVRQRLCTIAL 135 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 P + L SL +G+ H AL D+ +L++ + + + N + Sbjct: 136 SKELGLPLPNHKLESLAAHFGVVQQRA--HHALDDARVLAEAFRPSLRAAAASNVRLPLH 193 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 E R E +++ + ++ P Sbjct: 194 ECRPLTEWRESPAAPRIGQQAGP 216 >gi|188024469|ref|ZP_02997117.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188018579|gb|EDU56619.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 7 str. ATCC 27819] Length = 1442 Score = 73.0 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 4/205 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL D IIE GA+ + + + Q F+ P ++ + L I+ E Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNLTNISQE 467 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D + + + F N +AHN + + IDTL Sbjct: 468 MVNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLKNPSIDTLM 525 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I R +P + L ++CK+Y + + H A D+ +L+DV+ M +F Sbjct: 526 ILRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIMKNSLVN-DFEIINL 584 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 K + + N S Sbjct: 585 NQINTKLQSLMLKNRSFGNWVNLYI 609 >gi|205373423|ref|ZP_03226227.1| DNA polymerase III PolC [Bacillus coahuilensis m4-4] Length = 1436 Score = 73.0 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 73/197 (37%), Gaps = 6/197 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTGL + D IIE+ AV++ D +R F+ F P+ + A ++ Sbjct: 421 YIVFDVETTGLSANYDTIIELAAVKVFDGEIIDR-FERFANPH---HPLSATTINLTGIT 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 K + ++ +AHNA FD+GF+N QR I Sbjct: 477 DDMVKDAPEVSEVVTDFKKWAEDGILVAHNASFDMGFLNISYQRAGLKKASNPVIDTLEL 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L K+ + H A+ D+ + K++ + + Sbjct: 537 ARFLYPSMKNHRLNTLAKKL--DVELTQHHRAIYDAEATGYILAKLLKETYEKEIKYHDQ 594 Query: 189 EDRFFKEEKKTVPNISL 205 + + E Sbjct: 595 LNDYMGEGDSYKRARPY 611 >gi|325681442|ref|ZP_08160968.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus albus 8] gi|324106932|gb|EGC01222.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus albus 8] Length = 1498 Score = 73.0 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 6/165 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD+ETTG + ++D+IIEIGAV+L ++ F + + P G + L ITD+ Sbjct: 448 ICFDLETTGTNPRDDKIIEIGAVKLRGLEIVDK-FDMLVDP-GCPLTEFISNLTNITDDM 505 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LK + + F +F E+ +AHNA FD GFI +R S +S Sbjct: 506 LKGQSDIKTALEAFVEFCGEKPC-LVAHNAPFDTGFIKHACEREGIKFEFSSIDTVPMSQ 564 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 H D+ +L ++I++ Sbjct: 565 LMLPQLEKHKLNYVA---EHFGYGDFQHHRGCDDAEVLGKIFIEL 606 >gi|297562082|ref|YP_003681056.1| DNA polymerase III subunit epsilon [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846530|gb|ADH68550.1| DNA polymerase III, epsilon subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 595 Score = 73.0 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 64/204 (31%), Gaps = 3/204 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + RI E+GAV + F + P G L GIT Sbjct: 26 FVVLDLETTGTSASGSRITEVGAVRVRGGEVVGE-FATLVNP-GTPIPANITLLTGITQS 83 Query: 69 FLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P + F + E + +AHNA FD GF+ A +R D + Sbjct: 84 MVASAPPMEEVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDWPGYPVVDTLR 143 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + H AL D+ V ++ + Sbjct: 144 LARAVLARGETRNHRLATLAAYFGVPVAPNHRALEDARATVGVLHGLVERLRPMGVSSVE 203 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 K K + L D P Sbjct: 204 ELRAVTKPPTKAQRSRRHLAEDLP 227 >gi|196247598|ref|ZP_03146300.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16] gi|196212382|gb|EDY07139.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16] Length = 1434 Score = 73.0 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 6/175 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + IIE+ AV++ D +R F F P+ S ++L GITDE Sbjct: 419 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANPH-HPLSVTTMELTGITDE 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + F D+ + + AHNA FD+GF+NA L ++ + I Sbjct: 477 MVKDAPDVEEVLRRFIDWVGD--STLAAHNASFDIGFLNAGLAKMGLGKVINPVIDTLEL 534 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + LN+LCK++ I H A+ D+ + ++++ + Sbjct: 535 ARFLYPDLKNHRLNTLCKKF--DIELTQHHRAIYDAEATGHLLMRLLKEAEERGI 587 >gi|331696575|ref|YP_004332814.1| DNA polymerase III subunit epsilon [Pseudonocardia dioxanivorans CB1190] gi|326951264|gb|AEA24961.1| DNA polymerase III, epsilon subunit [Pseudonocardia dioxanivorans CB1190] Length = 586 Score = 73.0 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 73/211 (34%), Gaps = 4/211 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG S N I EIGAV++ + P G P + L GIT Sbjct: 31 FVVLDLETTGGSSANHSITEIGAVKVRGGEVLGE-LATLVDP-GTGVPPGVVALTGITTA 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + + +F A +AHNA FD GF+ A +R ++ P ++ Sbjct: 89 MVTGAPRLAQVLPTLLEFMGG--AVLVAHNAPFDAGFLRAACERHDRRWPRPPQLCTARL 146 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + + H AL D+ +V +++ + Sbjct: 147 ARAVLSRAEAPSVRLGALARLFGTATQPTHRALADARATVEVLHRLLERVGNLGVQSLEE 206 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + P + +R + Sbjct: 207 LLALARGASAHRPPEQVRRRRTLARDVPSAA 237 >gi|260769807|ref|ZP_05878740.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972] gi|260615145|gb|EEX40331.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972] Length = 205 Score = 73.0 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 63/189 (33%), Gaps = 6/189 (3%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL DR IEIGAV+L+D TFQ + P R + Sbjct: 9 IVLDFETTGLSPNMGDRAIEIGAVKLVDGQVAG-TFQQLMNPGFRVSGFIEGYTGITNTM 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 P + + +AHNA FD F++AE RI + + Sbjct: 68 LRTALPCEEVMAEFAH---FIGDTPLVAHNASFDKRFLDAEFDRIGVRYPGQFACSMLIA 124 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + P+ + K+ + + L + + + +N F Sbjct: 125 RRLIQNAPTHKLGDLVRFKQIENDGTFHRALADSQMTASLWMLMVNDLRERGVLNPSFAL 184 Query: 188 NEDRFFKEE 196 + + Sbjct: 185 MQKISKTNK 193 >gi|282850817|ref|ZP_06260191.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus gasseri 224-1] gi|282557769|gb|EFB63357.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus gasseri 224-1] Length = 1389 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 49/215 (22%), Positives = 82/215 (38%), Gaps = 9/215 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 372 YVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH---HPLSDTTINLTSIT 427 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R D + + Sbjct: 428 DEMVGAADDEKDVIKKFKDFYGDRPLCGHNVQFDVGFVNAALRRAGLDEISQPVVDTLEV 487 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ N F Sbjct: 488 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLL---DAFNARFHEA 542 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + + K K + +E L Sbjct: 543 DLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKN 577 >gi|138894778|ref|YP_001125231.1| DNA polymerase III PolC [Geobacillus thermodenitrificans NG80-2] gi|134266291|gb|ABO66486.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans NG80-2] Length = 1442 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 6/175 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + IIE+ AV++ D +R F F P+ S ++L GITDE Sbjct: 427 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANPH-HPLSVTTMELTGITDE 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + F D+ + + AHNA FD+GF+NA L ++ + I Sbjct: 485 MVKDAPDVEEVLRRFIDWVGD--STLAAHNASFDIGFLNAGLAKMGLGKVINPVIDTLEL 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + LN+LCK++ I H A+ D+ + ++++ + Sbjct: 543 ARFLYPDLKNHRLNTLCKKF--DIELTQHHRAIYDAEATGHLLMRLLKEAEERGI 595 >gi|325843612|ref|ZP_08168008.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter sp. HGF1] gi|325489298|gb|EGC91675.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter sp. HGF1] Length = 1528 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 25/217 (11%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V+D+ETTG + D IIEI AV++ + + + F F P+ RK S + ++L I Sbjct: 433 YVVYDVETTGFSTNYDVIIEIAAVKIKNGTIIDE-FSDFANPH-RKLSLKTIELTHILQS 490 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--------------- 113 + + P + F + ++ +AHNA FD+G + +R Sbjct: 491 DVDNAPELEDVMKRFKE--WSEDCILVAHNAAFDMGHLEQTYKRFNLGVCDNPVLDTLAL 548 Query: 114 ----NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 T + K N + H A+ D+ Sbjct: 549 ARVLYHHQYGVYWNYATDATIDEKFKRKMKRFNLKALSKFFKVDLTQHHRAIYDARATGQ 608 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206 +I M+ + KT+++ +K+T + Sbjct: 609 AFILMLRDI--LKLDIKTHDEVNQLVDKETSFKLDRT 643 >gi|295426318|ref|ZP_06818977.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664] gi|295063991|gb|EFG54940.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664] Length = 1435 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 87/225 (38%), Gaps = 16/225 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 418 FVIFDVETTGLSSVYDTIIEIGAVKMKNGKVLER-FDKFINPH---HPLSDQTINLTSIT 473 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R + + + Sbjct: 474 DEMVGAADDEDVVIRQFKDFYGDMPLCGHNVQFDVGFVNAALRRAGLEEIKQPVVDTLEV 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + H A D+ + K++ + Sbjct: 534 SRLLHPEQTRHTLDSLVKKY--DVVLEHHHRANQDAEATGYLMYKLLDAFKKKF------ 585 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + + + KR +P+ I L ++ ++ + K Sbjct: 586 GEDNLGKLNDFAKHGETFKRARPMHMTI----LAKNQAGLKNMYK 626 >gi|194468010|ref|ZP_03073996.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri 100-23] gi|194452863|gb|EDX41761.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri 100-23] Length = 954 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 50/213 (23%), Positives = 78/213 (36%), Gaps = 8/213 (3%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG + DRII+IG V + D F+ + P K ++L GI D+ Sbjct: 21 VVDLETTGTNVNHGDRIIQIGCVLVQDGEII-NHFETKINP-REKIPRSIVQLTGIEDKD 78 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P F I + E AHN FD F+NAEL+R L I Sbjct: 79 VRKAPLFEDIAGTIYSLLAETTFV--AHNVNFDFPFLNAELERAGYPSLSIPAIDTVTLS 136 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-INFGFKTN 188 + L L I H H A+ D+ +++ ++ Q + Sbjct: 137 QILLPTAKSFRLRDLTSSLHIEHDHP--HSAVSDAEATAELLTDLLKRIEQLPTLTLEKI 194 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 ++T + + + EEL Sbjct: 195 TQLKLNLPQQTAGVFDVELLRRRKSPQPLSEEL 227 >gi|225849248|ref|YP_002729412.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium azorense Az-Fu1] gi|225643190|gb|ACN98240.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium azorense Az-Fu1] Length = 204 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 7/170 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL+ K D I+ IGAV++ + N F + P R+ + E +K+HG+ Sbjct: 34 YVVFDTETTGLNPKTDDILSIGAVKIKQNRILLNDRFYTVVKPE-REINEETIKIHGLRK 92 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII--- 124 + L++ +F F + + FDV IN ++I PL +I Sbjct: 93 KDLENGIPIEKAIKDFLRFIGS--RPLVGYYIDFDVAMINKYTKKIIGIPLPNKKIEVSG 150 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P DL G+ I KH AL D+ + +++K+ Sbjct: 151 MYYDYKIGTIPQGFVDLRFDSILKGLKIPSFGKHDALNDAIMTGLIFLKL 200 >gi|78224248|ref|YP_385995.1| DNA polymerase III subunit epsilon [Geobacter metallireducens GS-15] gi|78195503|gb|ABB33270.1| DNA polymerase III, epsilon subunit [Geobacter metallireducens GS-15] Length = 218 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 7/173 (4%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D ETTGL DR IEIGAV + + +R FQ + P G++ S + GIT+E Sbjct: 7 VILDFETTGLSPGYGDRAIEIGAVLVRNNRIVDR-FQSLMNP-GKRVSGFIEEYTGITNE 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + F F N +AHNA FD F++AEL RI + ++ Sbjct: 65 MLAKAPPAEQVMERFASFIAGHN--LVAHNASFDRRFLDAELSRIGRR--RTGDFACSML 120 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ARR + ++ N + + H AL D+ + + ++ M+ + Sbjct: 121 AARRIYTNAPNHRLETLVSHLSLQTDGVFHRALADAEMTAQLWTAMIGELKET 173 >gi|91795118|ref|YP_564769.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans OS217] gi|91717120|gb|ABE57046.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans OS217] Length = 204 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 7/200 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +V D ETTGL DR IEIGAV+L+D +FQ + P R NS + GI+ Sbjct: 6 NVVVLDFETTGLSPDMGDRAIEIGAVKLVDGQVV-DSFQALINPGQRVNS-FIEQYTGIS 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ LKD P + + +F +F N +AHNA FD F++AE + + Sbjct: 64 NQMLKDAPRSNVVMGQFTEFIAGFN--LVAHNASFDKKFLDAEFSANKLS--YSGQFACS 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L ++RR + N ++ + H AL D+ + +++++ + Q + Sbjct: 120 LLLSRRISQEAPNHKLGTLIQHHQLANDGVFHRALADATMTANLWLHQVSLLQQRLPTQQ 179 Query: 187 TNEDRFFKEEKKTVPNISLL 206 D K + I+ Sbjct: 180 ITLDIINKISRLPKAKIANF 199 >gi|116617801|ref|YP_818172.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096648|gb|ABJ61799.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 1437 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 7/209 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL + DRIIE+ AV++ + + F ++ P G S KL ITD Sbjct: 419 FVAFDLETTGLSAVTDRIIELSAVKMQLGNVIEK-FSEYINP-GFPLSEFTTKLTSITDA 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + +I F + NA + HN FDVGF+NA R N+ + + I Sbjct: 477 MVANSDTEENIIKRFRE--WSGNAVLVGHNVTFDVGFMNAAYTRYNQPIITNAIIDTLPF 534 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L ++ KR+ I+ H A+ D+ + +++ + + + Sbjct: 535 TRWLYPDYKSYRLGTIAKRFN--INLEQAHRAIFDAETTGHIAWRLIKEAHE-RYNLNRH 591 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + + + L T Sbjct: 592 NELNDRMTEGDAWKHGRPVHATLLVQNAT 620 >gi|259046785|ref|ZP_05737186.1| Gram-positive family DNA polymerase III, alpha chain [Granulicatella adiacens ATCC 49175] gi|259036553|gb|EEW37808.1| Gram-positive family DNA polymerase III, alpha chain [Granulicatella adiacens ATCC 49175] Length = 1444 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 79/199 (39%), Gaps = 5/199 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + ++ F+ F+ P + A + Sbjct: 427 YVVFDVETTGLSAIYDSIIELAAVKMKNGVVIDK-FEEFIDPG---HPLSATTIQLTGIT 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S ++ +AHNA FD+GF+N + + + + I Sbjct: 483 DDMVRGSKSVEQVLKEFHEFSKDCILVAHNASFDMGFLNTGYENVGIERTEQPVIDTLEL 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKH-GALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + LN+L KRY + + + + L +++K Q+ + + Sbjct: 543 SRMLHPQLKSHRLNTLAKRYNVALEQHHRAVYDSETTGYLCHIFLKEAANDHQLLYHDEL 602 Query: 188 NEDRFFKEEKKTVPNISLL 206 N + +E K Sbjct: 603 NTNIHPEEVFKNGRPFHAT 621 >gi|293374694|ref|ZP_06621002.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter sanguinis PC909] gi|292646608|gb|EFF64610.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter sanguinis PC909] Length = 1528 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 25/217 (11%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V+D+ETTG + D IIEI AV++ + + + F F P+ RK S + ++L I Sbjct: 433 YVVYDVETTGFSTNYDVIIEIAAVKIKNGTIIDE-FSDFANPH-RKLSLKTIELTHILQS 490 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--------------- 113 + + P + F + ++ +AHNA FD+G + +R Sbjct: 491 DVDNAPELEDVMKRFKE--WSEDCVLVAHNAAFDMGHLEQTYKRFNLGVCDNPVLDTLAL 548 Query: 114 ----NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 T + K N + H A+ D+ Sbjct: 549 ARVLYHHQYGVYWNYATDATIDEKFKRKMKRFNLKALSKFFKVDLTQHHRAIYDARATGQ 608 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206 +I M+ + KT+++ +K+T + Sbjct: 609 AFILMLRDI--LKLDIKTHDEVNQLVDKETSFKLDRT 643 >gi|119476123|ref|ZP_01616475.1| exonuclease [marine gamma proteobacterium HTCC2143] gi|119450750|gb|EAW31984.1| exonuclease [marine gamma proteobacterium HTCC2143] Length = 216 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV L +R FQ + P G++ S GIT+ Sbjct: 7 VVLDFETTGLSPDAGDRAIEIGAVRLESGEVVDR-FQALMNP-GQRVSGFIEDHTGITNT 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + +F DF N +AHNA FD F++AEL RI++ L+ Sbjct: 65 MLANSDHSAKVMHQFADFIEGHN--LVAHNASFDKRFLDAELARISRSY-SGDFSCSLLA 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + + L +L K GI S H AL DS + +++ ++ Sbjct: 122 SRRIYQQAPNHQLGTLIKYTGIA-STGDFHRALYDSEMTVKLWLHLL 167 >gi|300856800|ref|YP_003781784.1| putative DNA polymerase III [Clostridium ljungdahlii DSM 13528] gi|300436915|gb|ADK16682.1| predicted DNA polymerase III [Clostridium ljungdahlii DSM 13528] Length = 362 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 9/201 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGLD +ND+I+EIGAV+ D +T++ F + P+ + K++GI D Sbjct: 61 FVALDFETTGLDYRNDKIVEIGAVKYKDEKETDK-FHFLINPHIH-IPEKITKINGIEDS 118 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD PS + + + D N + HNA+FD+ F++ + + Sbjct: 119 MVKDSPSINEVIPKLID--FMGNLPIVVHNARFDIDFLDENMSDNKYRGNSVIDTLSISR 176 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + R + H A+ D+ + +++Y+K G I + Sbjct: 177 KMFENIDNHRLQT-----IKDYLKIDLNSHRAIDDAKVAAEIYLKYCREGYPIKKDYDKL 231 Query: 189 EDRFFKEEKKTVPNISLLKRD 209 + K +T + D Sbjct: 232 RKQKNKINLETSFKYDPIDED 252 >gi|330793394|ref|XP_003284769.1| hypothetical protein DICPUDRAFT_75736 [Dictyostelium purpureum] gi|325085263|gb|EGC38673.1| hypothetical protein DICPUDRAFT_75736 [Dictyostelium purpureum] Length = 501 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 5/169 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I FD+ET+G ++ D IIEIGAVEL+D +T FQ + P + + A ++H + + Sbjct: 288 RVICFDLETSGFSAE-DSIIEIGAVELIDGCRTGVIFQSYAKPKAQIHP-RAEEIHQLNN 345 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L+ P + F D+ + + IAHN FD + EL R + T+ Sbjct: 346 YLLQYSPPIEVMLCSFMDWVGD--SPLIAHNLSFDKRMLLQELVRYKIPFDNDHICFCTM 403 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL-LDSHLLSDVYIKMM 175 R+ + L+S+ ++ I K +D+ +LS VY ++ Sbjct: 404 KYFRKVYMGLNYSLDSVSQKLKINKLLLRKTHGALVDAEILSIVYTHLL 452 >gi|226313025|ref|YP_002772919.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599] gi|226095973|dbj|BAH44415.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599] Length = 1434 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 72/197 (36%), Gaps = 6/197 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL++ IIEI AV++ ++ + + P + + Sbjct: 421 YVVFDTETTGLNASEHTIIEIAAVKMKGAEIIDQ-WTELIDPQLQIGPKTTEITGITNEM 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +A +AHNA+FD FINA +RI +P + Sbjct: 480 LRGQETLDVVLRKFKD---FTGDAILVAHNAEFDKAFINACAKRIGMEPWTNPFLDTLPL 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L SL K++ + + H AL D+ L+ V+ +M+ + Sbjct: 537 ARLMYKGMRNYRLGSLAKKFNVE--LINAHRALDDTVALAHVFQQMLKDIKEAEIKSLAE 594 Query: 189 EDRFFKEEKKTVPNISL 205 + EE Sbjct: 595 LNEKSNEEADYKSGRPF 611 >gi|163751714|ref|ZP_02158932.1| putative DNA polymerase III [Shewanella benthica KT99] gi|161328366|gb|EDP99525.1| putative DNA polymerase III [Shewanella benthica KT99] Length = 206 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 72/200 (36%), Gaps = 13/200 (6%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I+ D ETTGL + DR IEIGAV + D TFQ + P R + A Sbjct: 10 IILDFETTGLSPNQGDRAIEIGAVRIQDGIVV-DTFQELMNPGFRVSGFIAGYTGISNAM 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P + N +AHNA FD F++ + + ++ Sbjct: 69 LANAAPCEEVMARFAD---FIGNHNLVAHNASFDQRFLD--AELDAINLSYGGEFACSML 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ------IN 182 IARR + + N Y + H AL DS + + +++ M+ + Sbjct: 124 IARRLYQDAPNHKLGGLVEYKQIENDGVFHRALADSEMTAKLWLLMLDDMRNEHSILAPS 183 Query: 183 FGFKTNEDRFFKEEKKTVPN 202 F + R K + N Sbjct: 184 FTLMQDLARKPKAQVNRFLN 203 >gi|154505436|ref|ZP_02042174.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149] gi|153794279|gb|EDN76699.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149] Length = 219 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 12/186 (6%) Query: 2 IRKNKMRKI-------VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 +R+ R + VFD+ETTG+ + D IIEI AV++ TF + P GR Sbjct: 1 MREKGNRLVQYVPDYTVFDLETTGISANMDDIIEISAVKVKGG-IVQDTFSTLVNP-GRH 58 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 +A K++GITD+ + + P +EF F E + HN + Sbjct: 59 IPAQATKVNGITDQMVSEAPLIREAMTEFLRFVGE--DILVGHNIQSFDMKFIYREVEEL 116 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + IDTL +AR+ P ++ + + IS + H AL D + + +M Sbjct: 117 FQETVSNDFIDTLYMARKCLPELKHHRLTDLAEH-FGISSKGAHRALNDCVMNQKCFEEM 175 Query: 175 MVGGSQ 180 + Sbjct: 176 AKLQKK 181 >gi|225026305|ref|ZP_03715497.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353] gi|224956369|gb|EEG37578.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353] Length = 1484 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 10/199 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG +D IIEIGAV++ + + VF+ P R +L I D Sbjct: 453 YVVFDLETTGFSPIHDAIIEIGAVKVSKGKIS-DHYSVFVNPQ-RPIPLRITELTSIDDS 510 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D S I EF F + +AHNA+FDV FI +R + ++ Sbjct: 511 MVADAKSIEEILPEFLSFCEGCS--LVAHNAEFDVSFIEENAKRQGFETDFTVLDTVQMA 568 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFGF 185 ++ LN++CKR I H H A+ D+ + ++V++ +M+ Sbjct: 569 RLLLTD-LNKFKLNTVCKRLNIKQEH--HHRAVDDARVTAEVFLRFVEMLEEQDVHTLAK 625 Query: 186 KTNEDRFFKEEKKTVPNIS 204 + + K P+ Sbjct: 626 LNDMGAMSPDLIKKAPSYH 644 >gi|326692542|ref|ZP_08229547.1| DNA polymerase III, alpha subunit [Leuconostoc argentinum KCTC 3773] Length = 1437 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 47/208 (22%), Positives = 82/208 (39%), Gaps = 7/208 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL + D+IIE+ AV++ + ++ F ++ P G S +L ITD Sbjct: 419 FVAFDLETTGLSAVTDKIIELSAVKMQLGNVVDQ-FSEYINP-GFPLSEFTTELTSITDS 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + S + F D+ + A I HN FD+GF+NA R K + I Sbjct: 477 MVANADPESDVIQRFRDWVGD--AVLIGHNVTFDIGFMNAAYARYQKPAIGNPVIDTLPF 534 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L ++ KR+ I+ H A+ DS + ++M + + ++ Sbjct: 535 TRWLYPDYKSYRLGTIAKRFN--INLEQAHRAIFDSETTGHIAWRLMKEAKE-RYDLTSH 591 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + + L Sbjct: 592 QQLNDHMTEGDAWKHGRPVHATLLVKNA 619 >gi|148973897|ref|ZP_01811430.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3] gi|145965594|gb|EDK30842.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3] Length = 213 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 89/209 (42%), Gaps = 18/209 (8%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL DR IEIGAV+L++ TFQ + P G + S GIT+ Sbjct: 10 IVLDFETTGLSPNMGDRAIEIGAVKLVNGEVV-DTFQQLMNP-GFRVSGFIEGYTGITNR 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L S + EF DF + +AHNA FD F++AEL I +D + + Sbjct: 68 MLSTAASCGEVMDEFADFIQDSQ--LVAHNASFDKRFLDAELDYIGRDYNGQFACSMLIA 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS------QI 181 + P+ + K + + H AL DS + + +++ M+ Q Sbjct: 126 RRLIQDAPTHKLGDLVRFKSI---DNDGTFHRALADSEMTARLWLLMIDELQSDHGIHQP 182 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 +F + K K +P + + RD Sbjct: 183 SFQLM---QKISKTAKGAIPKLLMSSRDP 208 >gi|116629466|ref|YP_814638.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri ATCC 33323] gi|116095048|gb|ABJ60200.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus gasseri ATCC 33323] Length = 1432 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 49/215 (22%), Positives = 82/215 (38%), Gaps = 9/215 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH---HPLSDTTINLTSIT 470 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R D + + Sbjct: 471 DEMVGAADDEKDVIKKFKDFYGDRPLCGHNVQFDVGFVNAALRRAGLDEISQPVVDTLEV 530 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ N F Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLL---DAFNARFHEA 585 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + + K K + +E L Sbjct: 586 DLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKN 620 >gi|289578391|ref|YP_003477018.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9] gi|289528104|gb|ADD02456.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9] Length = 1406 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 7/196 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTGL + ND IIEIGAV++ + TF+ F+ P S KL GI + + Sbjct: 395 VFDIETTGLSNINDEIIEIGAVKIKEGKII-DTFETFVNPK-IPISSFITKLTGIDESMV 452 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD PS I +F + N+ +AHNA FDV FI ++ ++ N + + LS Sbjct: 453 KDAPSIEEILPKFLE--FSSNSVLVAHNANFDVSFIKSKAKKFNLNVNNTVLDTLELSRH 510 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 K + + + H A+ D+ ++++IK + ++ + + Sbjct: 511 LYKDLKNYKLDT---LAEHLQVKLEHHHRAVDDARATAEIFIKTIDRLKELGVKKVKDIN 567 Query: 191 RFFKEEKKTVPNISLL 206 +E + + + + Sbjct: 568 DILRESEVDIKKLPVY 583 >gi|300361904|ref|ZP_07058081.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03] gi|300354523|gb|EFJ70394.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03] Length = 1432 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 49/215 (22%), Positives = 82/215 (38%), Gaps = 9/215 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ + ++ + Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH---HPLSDTTINLTSIT 470 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + HN +FDVGF+NA L+R D + + Sbjct: 471 DEMVGAADDEKDVIKKFKDFYGDRPLCGHNVQFDVGFVNAALRRAGLDEISQPVVDTLEV 530 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R+ L+SL K+Y + + H H A D+ + K++ N F Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEH--HHRANQDAEATGYLMFKLL---DAFNARFHEA 585 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + + K K + +E L Sbjct: 586 DLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKN 620 >gi|189346782|ref|YP_001943311.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245] gi|189340929|gb|ACD90332.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245] Length = 205 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 10/184 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +VFD ETTG D K D+II IGA+ L + +F+V + + +A+ +HG+ Sbjct: 17 RFVVFDTETTGFDLKTDKIISIGAIALTAQRIEVGDSFEVLVR-QEKVGDRDAVSVHGLL 75 Query: 67 DEFLKDKPSFSSIFSEFWDFF------NEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + + S + F D+ + I + L D Sbjct: 76 RKDIASGIDEKSAVTAFLDYIGNSVLVAQHAGFDITMVNRVLWKHFGIRLFNDVVDTASL 135 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ ++ H + L++LC+RY I +H + D++L + ++ +++ G + Sbjct: 136 AKRLEKGPYYNLAHKAGEYRLDNLCERYNIR--LHDRHTSAGDAYLTAQLFQRLLAKGKK 193 Query: 181 INFG 184 Sbjct: 194 SGID 197 >gi|257055123|ref|YP_003132955.1| hypothetical protein Svir_10720 [Saccharomonospora viridis DSM 43017] gi|256584995|gb|ACU96128.1| exonuclease, DNA polymerase III, epsilon subunit family [Saccharomonospora viridis DSM 43017] Length = 570 Score = 72.7 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 74/217 (34%), Gaps = 10/217 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG+ I EIGAV++ F + P G P+ + L GIT Sbjct: 17 FVVVDLETTGVTPDGAGITEIGAVKVRGGEVVGE-FATLVDP-GVPIPPQIVALTGITPA 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + F +F + A +AHNA FDV F+ A Q + P+ + Sbjct: 75 MVRSAPRIEQVLPTFLEFVSG--AVLVAHNAGFDVSFLKAACQTHGYEWPKPTVVCTLKL 132 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG---- 184 R KH AL D+ DV ++ + Sbjct: 133 ARRVLGRQETRGHRLSTLASLFGARSTPKHRALDDAKATVDVLHGLLERVGPLGVQSLEE 192 Query: 185 -FKTNEDRFFKEEKKTVPNISLLKRDKPLFTR-ITKE 219 + +K L +R R + E Sbjct: 193 LLDYLRAVTPAQRRKRGLAAHLPERPGVYLFRGPSDE 229 >gi|296129915|ref|YP_003637165.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM 20109] gi|296021730|gb|ADG74966.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM 20109] Length = 631 Score = 72.7 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 69/198 (34%), Gaps = 4/198 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + D I EIGAV++ FQ + P G P L GIT Sbjct: 64 FVVVDLETTGGRAAEDAITEIGAVKVRGGEVLGE-FQTLVDPGG-PVPPFIQVLTGITTS 121 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P+ + F + + A +AHNA FDVGF+ A R + + Sbjct: 122 MLVGAPTIGEVLPSFLE--FARGAVLVAHNAPFDVGFLRAAAARSERAWPGFQVVDTVRL 179 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R + + H AL D+ DV ++ + + + Sbjct: 180 ARRVVLRDEAPNHKLSTLAALFGATVTPNHRALADARATVDVLHALLGRLAPLGVTHLED 239 Query: 189 EDRFFKEEKKTVPNISLL 206 V S L Sbjct: 240 LATATDPVPADVRRRSTL 257 >gi|302389800|ref|YP_003825621.1| DNA polymerase III catalytic subunit, PolC type [Thermosediminibacter oceani DSM 16646] gi|302200428|gb|ADL07998.1| DNA polymerase III catalytic subunit, PolC type [Thermosediminibacter oceani DSM 16646] Length = 1415 Score = 72.7 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 4/116 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTGL D IIEIGAV++ +R F F+ P GR S L GI + Sbjct: 404 YVVTDIETTGLSLDADEIIEIGAVKVYRGQIIDR-FHSFVNP-GRPISSHITNLTGINNA 461 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + P + S+F F N ++AHNA+FD GFI + ++ + Sbjct: 462 MVSQAPPVKDVMSDFLRFI--GNGIFVAHNAEFDAGFIRRDCKKFGMKFDNKVMDT 515 >gi|300856235|ref|YP_003781219.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528] gi|300436350|gb|ADK16117.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528] Length = 1449 Score = 72.7 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 80/206 (38%), Gaps = 7/206 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG ++I EIG +++ D TF F+ P + +++ ITD+ Sbjct: 426 YCVLDLETTGFSPVTEKITEIGIMKIKDGKVI-DTFSTFVNPE-KPIPLRVVEVTNITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ + +F + DF + + +AHNA+FDVGF+ + + D +L+ Sbjct: 484 MVRNAETIEQVFPKMLDFIKD--SVLVAHNAEFDVGFLKHNAKILGCDFDFTYVDTLSLA 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + I H AL D V+ M+ + + Sbjct: 542 QEVFPDFKTYKL---GRIAKNLGIKVEVAHRALDDVATTVKVFNVMLEKLKERGAENLKD 598 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 D + ++E LK + Sbjct: 599 IDIYGRDEAAKKEEYKKLKTYHAIIL 624 >gi|297544667|ref|YP_003676969.1| DNA polymerase III subunit alpha [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842442|gb|ADH60958.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 1406 Score = 72.7 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 7/196 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTGL + ND IIEIGAV++ + TF+ F+ P S KL GI + + Sbjct: 395 VFDIETTGLSNINDEIIEIGAVKIKEGKII-DTFETFVNPK-IPISSFITKLTGIDESMV 452 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD PS I +F + N+ +AHNA FDV FI ++ ++ N + + LS Sbjct: 453 KDAPSIEEILPKFLE--FSSNSVLVAHNANFDVSFIKSKAKKFNLNVNNTVLDTLELSRH 510 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 K + + + H A+ D+ ++++IK + ++ + + Sbjct: 511 LYKDLKNYKLDT---LAEHLQVKLEHHHRAVDDARATAEIFIKTIDRLKELGVKKVKDIN 567 Query: 191 RFFKEEKKTVPNISLL 206 +E + + + + Sbjct: 568 DILRESEVDIKKLPVY 583 >gi|307264910|ref|ZP_07546472.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306920168|gb|EFN50380.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 1407 Score = 72.7 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 7/196 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTGL + ND IIEIGAV++ + TF+ F+ P S KL GI + + Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKEGKII-DTFETFVNPK-IPISSFITKLTGIDESIV 453 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD PS I F + N+ +AHNA FDV FI ++ ++ N + + LS Sbjct: 454 KDAPSIEEILPNFLE--FSSNSVLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRH 511 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 K + + + H A+ D+ ++++IK + ++ + + Sbjct: 512 LYKDLKNYKLDT---LSEHLQVKLEHHHRAVDDARATAEIFIKTIDRLKELGVKKVKDIN 568 Query: 191 RFFKEEKKTVPNISLL 206 +E + + + + Sbjct: 569 AILRESEVDIRKLPVY 584 >gi|227432323|ref|ZP_03914316.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351929|gb|EEJ42162.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 1437 Score = 72.7 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 7/209 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL + DRIIE+ AV++ + + F ++ P G S KL ITD Sbjct: 419 FVAFDLETTGLSAVTDRIIELSAVKMQLGNVIEK-FSEYINP-GFLLSEFTTKLTSITDA 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + +I F + NA + HN FDVGF+NA R N+ + + I Sbjct: 477 MVANSDTEENIIKRFRE--WSGNAVLVGHNVTFDVGFMNAAYTRYNQPIITNAIIDTLPF 534 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L ++ KR+ I+ H A+ D+ + +++ + + + Sbjct: 535 TRWLYPDYKSYRLGTIAKRFN--INLEQAHRAIFDAETTGHIAWRLIKEAQE-RYNLNRH 591 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + + + L T Sbjct: 592 NELNDRMTEGDAWKHGRPVHATLLVQNAT 620 >gi|261323134|ref|ZP_05962331.1| DNA polymerase III [Brucella neotomae 5K33] gi|261299114|gb|EEY02611.1| DNA polymerase III [Brucella neotomae 5K33] Length = 233 Score = 72.7 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 18 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 75 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + + E +AHNA+FD+ +I E ++ D LD Sbjct: 76 VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 134 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + C +HGAL D++L + +Y+ + Sbjct: 135 FYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 192 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K + + K ++ Sbjct: 193 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 229 >gi|189346954|ref|YP_001943483.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245] gi|189341101|gb|ACD90504.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245] Length = 214 Score = 72.7 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 62/213 (29%), Positives = 91/213 (42%), Gaps = 10/213 (4%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV + +R FQ + P G + S GIT+E Sbjct: 10 VVLDFETTGLSPQYGDRAIEIGAVLVEHGEIVDR-FQKLMNP-GFRISSFIEGYTGITNE 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK +P + +EF F +N AHNA FD F++ EL+R + + + L Sbjct: 68 MLKGQPCCEEVMAEFSGFIAGRNIV--AHNASFDRRFLDFELKRAKRVY-EGACCCSLLV 124 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGFKT 187 R S + L +L GI S H AL D+ + + +++ M+ Q T Sbjct: 125 SRRIYQDSPNHRLQTLVTHAGIP-ETGSFHRALADAEMTALLWMSMIDRIRRQYGISAIT 183 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + + + L R KEE Sbjct: 184 FDQLSDLSKIDKLYTHRYLTALAEELLR--KEE 214 >gi|239616641|ref|YP_002939963.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1] gi|239505472|gb|ACR78959.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1] Length = 185 Score = 72.7 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 8/168 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +V D ETTG + DRIIEI A+ + + F + P R +HG+ Sbjct: 5 YVVIDTETTGPSPLRGDRIIEIAAIPIYRGKMFVDLAFHSLVNPQIR-IPAYISGIHGLK 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + +P+ S +F F ++ NA + H+ + D+ F + + I PL I Sbjct: 64 NEDVTSEPTISDVFPRFKEYL--GNAIIVGHSIEVDMKFFDIACKEIGTFPLSNQYIDTL 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 S + + I H AL D+ + V++ M Sbjct: 122 KIAKDLFKEGSYSLAE---LAKRLKIKDAPTHRALDDARVTGKVFLAM 166 >gi|150020931|ref|YP_001306285.1| DNA polymerase III PolC [Thermosipho melanesiensis BI429] gi|149793452|gb|ABR30900.1| DNA polymerase III, alpha subunit [Thermosipho melanesiensis BI429] Length = 1362 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 97/226 (42%), Gaps = 12/226 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTG ++K D IIEIGAV+ D TF F+ P + S KL GITDE + Sbjct: 346 VFDLETTGTNAKFDEIIEIGAVKYRDGKVI-NTFSSFVKP-TKSISEFTQKLTGITDEMV 403 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD S +F EF F + +AHNA FD GFI +R+ L +DTL ++ Sbjct: 404 KDAKSIEEVFPEFLKFIDG--TVLVAHNADFDYGFIREVNRRLYNKEL-DFAYLDTLKLS 460 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF------- 183 + + H A D+ + +D++ K++ + Sbjct: 461 KVLLRGKVKSFGLGKLVEYFKLGPFKHHRAFEDASVTADLFGKLLELLLKRGIKTLGQVN 520 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 K KK +I++L RDK + K D H K + Sbjct: 521 NLKNTSSISTIRTKKQFNHITILVRDKVGLKNLYKLVSDAHVKYFK 566 >gi|295696154|ref|YP_003589392.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912] gi|295411756|gb|ADG06248.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912] Length = 1428 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 6/171 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL+++ +IEI AV++ + + P G SP+ +L GIT + Sbjct: 416 FVVFDTETTGLNAREHTLIEIAAVKVRGGELV-DHYTSLIDP-GVPISPKIQELTGITSD 473 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K +P S + F A +AHNA+FD+GF+ + +++ + P D + Sbjct: 474 MVKGQPGLSEVLEAFRK--FAAGAVLVAHNAEFDMGFLQSAARKLGQPPWDHPVLDTLAL 531 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + L +L +++ + + H A D+ + V++ ++ Sbjct: 532 ARVLYPRERNHRLKTLTQKFNVE--LVNHHRAAADAEATAKVFLHLLREAE 580 >gi|322417781|ref|YP_004197004.1| putative PAS/PAC sensor protein [Geobacter sp. M18] gi|320124168|gb|ADW11728.1| putative PAS/PAC sensor protein [Geobacter sp. M18] Length = 835 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 7/169 (4%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGIT 66 +VFD ETTGL S+ D+++ I AV + N F + P GR E+ H I Sbjct: 641 YVVFDTETTGLQISQGDKVVSISAVRIRRGKVQNADIFHTLVNP-GRHIPAESTAFHRIE 699 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D PS + ++ +F +A +AHNA FD ++ ++ + Sbjct: 700 DHMVADAPSMNEVYPQFVK--YAGDAVLVAHNAAFDKKCLDMAAAEAGLPLVENPILDTL 757 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + L+++ +R GI I +H +L D+ + +++ ++ Sbjct: 758 FLSVGLHSGTEGHSLDAMAQRMGIAI--EGRHTSLGDARATAQIFLGLL 804 >gi|296454533|ref|YP_003661676.1| DNA polymerase III subunit epsilon [Bifidobacterium longum subsp. longum JDM301] gi|296183964|gb|ADH00846.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp. longum JDM301] Length = 235 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 15/212 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + I EIGAV + + ++ FQ + P R + L GITD Sbjct: 34 YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + D + F + + HN FD+ F++ + I + Sbjct: 92 MVADLDPIDKVLPRFIAWLATPAAGPTVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADY 151 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L R+GI +H AL D+ + M ++ Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFGIA--DNEEHRALSDAIQTQQCFEWM------RHY 203 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 + +E + ++ N + + + + R Sbjct: 204 VTEHHESEAIRWKQSPAKNSTEILHQQLVVKR 235 >gi|163844775|ref|YP_001622430.1| DNA polymerase III epsilon subunit family exonuclease [Brucella suis ATCC 23445] gi|163675498|gb|ABY39608.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella suis ATCC 23445] Length = 224 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 83/217 (38%), Gaps = 5/217 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + F + + + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 VHGFDNWMTCYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 125 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + C +HGAL D++L + +Y+ + Sbjct: 126 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 183 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K + + K ++ Sbjct: 184 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 220 >gi|330897776|gb|EGH29195.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. japonica str. M301072PT] Length = 50 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFL 48 R IV D ETTG+ RI+EIG VEL+ T R F V+L Sbjct: 9 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYL 50 >gi|320457724|dbj|BAJ68345.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 235 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 74/212 (34%), Gaps = 15/212 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + I EIGAV + ++ FQ + P R + L GITD Sbjct: 34 YVALDLETTGFYPNSCAITEIGAVRVRKGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + D + F + + HN FD+ F++ + I + Sbjct: 92 MVADLDPIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADY 151 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L R+GI +H AL D+ + M ++ Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFGIA--DNEEHRALSDAIQTQQCFEWM------RHY 203 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 + +E + ++ N + + + + R Sbjct: 204 VTEHHESEAIRWKQAPARNSTEILHQQLVVKR 235 >gi|311741608|ref|ZP_07715431.1| epsilon subunit family exonuclease [Corynebacterium pseudogenitalium ATCC 33035] gi|311303272|gb|EFQ79352.1| epsilon subunit family exonuclease [Corynebacterium pseudogenitalium ATCC 33035] Length = 221 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 4/98 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG + + DRIIE+ AV + ++ L P+G+ + +HGIT++ Sbjct: 21 FAVIDTETTGFNKRYDRIIELAAVRADSHFNPIDSWHTLLNPDGKAI--KNSHIHGITND 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 + P+FS ++ +F + + AHNA FD I Sbjct: 79 MVVTAPTFSEVYGDFTSYIDGMQ--LFAHNAPFDSKMI 114 >gi|160901638|ref|YP_001567219.1| DNA polymerase III, epsilon subunit [Petrotoga mobilis SJ95] gi|160359282|gb|ABX30896.1| DNA polymerase III, epsilon subunit [Petrotoga mobilis SJ95] Length = 187 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 5/184 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEA 59 ++ + D ETTGL+ + DRIIEI A+ + D + F + PN E Sbjct: 1 MKVKDKVFLALDFETTGLNPELGDRIIEIAAIPIYDKKINFKYAFHTLVNPN-IFIPGEV 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K H + ++ + + PS S +F F ++ ++ + ++HN K D+ F++ + +D Sbjct: 60 SKFHKLNNQDISNAPSLSEVFPRFKEYIDD--SIIVSHNVKMDLRFLDIAAKESGMFSID 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I N K L + L YIK+ + Sbjct: 118 NYYIDTLEISKYYFDKGPYNLEFLSKKFNLGIKQFHRAWDDALSTAKLFQKYIKLFSFEA 177 Query: 180 QINF 183 INF Sbjct: 178 IINF 181 >gi|110638081|ref|YP_678290.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC 33406] gi|110280762|gb|ABG58948.1| DNA polymerase III, epsilon subunit [Cytophaga hutchinsonii ATCC 33406] Length = 449 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 58/183 (31%), Gaps = 3/183 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + DIETTG + +RIIEI + T T+Q + P R+ L GI Sbjct: 1 MMYSIIDIETTGGHASGNRIIEIAIYKFDGEKIT-DTYQTLINPE-RRIPVFITSLTGID 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + D P F+ + E DF + N + L + Sbjct: 59 TEMVADAPVFADVAREITDFTRDSVFVAHNVNFDYTF-VKKELQALNMPYNLPKLCTVRL 117 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 PS + HR+ A LL+ + + G + Sbjct: 118 SRKIFPGLPSYSLGNLCGSLGIDVQNRHRAAGDAEATVRLLNKLLLNDTEGFIPKSLKKN 177 Query: 187 TNE 189 + E Sbjct: 178 SKE 180 >gi|291459111|ref|ZP_06598501.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291418365|gb|EFE92084.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 1517 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 100/238 (42%), Gaps = 14/238 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG + D+IIEIGAV+L + +R VF+ P +L I D Sbjct: 493 VVFDIETTGFHPQTDKIIEIGAVKLREGKICDRM-DVFVNPE-IPIPFRITQLTSIDDSM 550 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + + + EF F + A +AHNA FD GFI +R+ LS Sbjct: 551 VIGERTIEELLPEFLSFCGD--AVIVAHNADFDTGFIRENARRLGLSYDPTVVDTVGLSR 608 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY---IKMMVGGSQINFGFK 186 +R L+++ K GI+ + H A+ D+ +++Y + ++ Sbjct: 609 LLLPK-LNRFKLDTVAKELGIS--LLNHHRAVDDAEATAEIYQKELSLLRERGVKKLSEI 665 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL--DEHDKTIQTLGK--NAIWDRY 240 + ++ + +P+ + K RI L + H K + K ++ RY Sbjct: 666 DSLLFDYEANVRKLPSFHCIILAKNDIGRINLYRLISESHLKYFRKNPKIPKSLLKRY 723 >gi|295395939|ref|ZP_06806124.1| nuclease subunit of the excinuclease complex [Brevibacterium mcbrellneri ATCC 49030] gi|294971212|gb|EFG47102.1| nuclease subunit of the excinuclease complex [Brevibacterium mcbrellneri ATCC 49030] Length = 560 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 44/201 (21%), Positives = 69/201 (34%), Gaps = 3/201 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG +S I EIGAV+ FQ + P SP +L GIT+ + Sbjct: 17 VVDLETTGANSAQGDITEIGAVKSRGGEIIGE-FQTLVRPTRSVISPFVERLTGITNSMV 75 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P +S+ F + + +AHNA FDVGF+ R++ + Sbjct: 76 ATAPELASVIPMFLE--FAHGSILVAHNAGFDVGFLKEACARLDYPWPGYEVVDTVRLAR 133 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 + + H AL D+ + M + + Sbjct: 134 LCVTRQEVRNHKLGTLATFFNVPTPPTHRALDDARATHHILQSMFELFGAVGVTTFEDLQ 193 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 ++ K + L D P Sbjct: 194 GLKQQGWKVRQSKKHLAHDVP 214 >gi|319650832|ref|ZP_08004969.1| hypothetical protein HMPREF1013_01575 [Bacillus sp. 2_A_57_CT2] gi|317397430|gb|EFV78131.1| hypothetical protein HMPREF1013_01575 [Bacillus sp. 2_A_57_CT2] Length = 220 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 4/176 (2%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66 IVFD ETTG DRIIEIGAV + + FQ ++ P R+ S E +L I+ Sbjct: 28 FIVFDTETTGFQVSATDRIIEIGAVPVKGFQVQEKDLFQTYVNPK-RQISREIRELTSIS 86 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE +KD P F+D+ + A + + + K L IDT Sbjct: 87 DELVKDAPQALEAILSFFDYVESREAVCLVGHYVGFDALAIKSEFKREKLALKNFLTIDT 146 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 L + PS +H A+ D+ + +Y++++ Q Sbjct: 147 LDLIGFIAPSYDMRDLERYAMA-FGTRIYDRHSAVGDALTTAYLYVELLFQFQQRG 201 >gi|239623211|ref|ZP_04666242.1| DNA polymerase III subunit epsilon [Clostridiales bacterium 1_7_47_FAA] gi|239522177|gb|EEQ62043.1| DNA polymerase III subunit epsilon [Clostridiales bacterium 1_7_47FAA] Length = 240 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 74/199 (37%), Gaps = 7/199 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D+ETTGL+ K ++I EI A++++D + R + F+ P GR +L GITD Sbjct: 5 YIALDLETTGLEPKQEKITEIAALKVVDGVISQR-YVTFVNP-GRSLGAYITQLTGITDG 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + + F + + HN +FD F+ + T Sbjct: 63 MLADAPPIEELIEDVVKFCGD--LPLLGHNIRFDYSFLKHAAVNRRLEFEREGIDTLT-- 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R + N C + + H A D+ +Y ++M Q Sbjct: 119 -LCRAFMTGETRKNLSCACSYFHVPQSTAHRAQADAEAAHLLYQELMSRHGQDQPSMFDP 177 Query: 189 EDRFFKEEKKTVPNISLLK 207 + +K ++ + Sbjct: 178 KPLIYKAKRDQAATKRQKE 196 >gi|23464698|ref|NP_695301.1| exonuclease [Bifidobacterium longum NCC2705] gi|189438951|ref|YP_001954032.1| DNA polymerase III subunit alpha [Bifidobacterium longum DJO10A] gi|239620784|ref|ZP_04663815.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132392|ref|YP_003999731.1| polc [Bifidobacterium longum subsp. longum BBMN68] gi|23325262|gb|AAN23937.1| possible exonuclease [Bifidobacterium longum NCC2705] gi|189427386|gb|ACD97534.1| DNA polymerase III alpha subunit [Bifidobacterium longum DJO10A] gi|239516360|gb|EEQ56227.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311772644|gb|ADQ02132.1| PolC [Bifidobacterium longum subsp. longum BBMN68] Length = 235 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 15/212 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + I EIGAV + + ++ FQ + P R + L GITD Sbjct: 34 YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + D + F + + HN FD+ F++ + I + Sbjct: 92 MVADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADY 151 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L R+GI +H AL D+ + M ++ Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFGIA--DNEEHRALSDAIQTQQCFEWM------RHY 203 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 + +E + ++ N + + + + R Sbjct: 204 VTEHHESEAIRWKQAPAKNSAEILHQQLVVKR 235 >gi|51893409|ref|YP_076100.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM 14863] gi|51857098|dbj|BAD41256.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM 14863] Length = 390 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 90/228 (39%), Gaps = 17/228 (7%) Query: 7 MRK--IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 MR +V D ETTGL+ RII+IG V + + +T++ L + S A++++ Sbjct: 20 MRYNLVVIDTETTGLEYDQHRIIQIGVVAIKEQRIV-KTWESKLRLIDGEVSAYAMQVNR 78 Query: 65 ITD--EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + + P ++ + + F AHN FD+GF+ AE R Sbjct: 79 LDPSDMRSEKYPHPKAVLRKLQEEFLRPGVLLGAHNLSFDLGFLQAEFARHGLPQ-WQGN 137 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +D++++ R P L SL + + + H AL D+ + V + ++ Q Sbjct: 138 FVDSMALGRALLPDLSASLESLARHF--RVELTQHHDALADAVATAHVLLHLLDLAQQRG 195 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 + P+ + + +T+EE+ IQ Sbjct: 196 LDPLNLLIERQGRPIRYRPDNARV---------VTQEEILAELAKIQQ 234 >gi|257452473|ref|ZP_05617772.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] gi|317059014|ref|ZP_07923499.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] gi|313684690|gb|EFS21525.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] Length = 1450 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 98/218 (44%), Gaps = 8/218 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V+D+ET G +S +IIEIGAV++++ +R F + P G+ + + ITD Sbjct: 424 FVVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDR-FSQLVNP-GQSIPQNIVDVTNITDS 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++++P+ + +F DF + +AHNA FD+G++ + ++ +PS I Sbjct: 482 MVQNEPNIEEVLPKFLDFIEG--SILVAHNADFDIGYLKQQCKQQGYSDFNPSFIDTLQM 539 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L L K+ G++ + H A+ D ++++ + + Sbjct: 540 AKDLYPELKQFGLGPLNKKLGLS--LENHHRAVDDCQATGNMFLIFLDKYLDQGIHKLSE 597 Query: 189 EDRFF--KEEKKTVPNISLLKRDKPLFTRITKEELDEH 224 F +K+ N+ LL +D+ + + D H Sbjct: 598 MQGAFPVNTKKQNTRNVMLLVKDRVGLENLNRLVSDAH 635 >gi|154484062|ref|ZP_02026510.1| hypothetical protein EUBVEN_01771 [Eubacterium ventriosum ATCC 27560] gi|149735104|gb|EDM50990.1| hypothetical protein EUBVEN_01771 [Eubacterium ventriosum ATCC 27560] Length = 237 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 91/234 (38%), Gaps = 15/234 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ + DIET+G+ K D+IIEIGAV++ D TF + P G K SP Sbjct: 1 MVKD----YVCVDIETSGIRVKWDKIIEIGAVKVRDGKAV-DTFSELINP-GLKLSPYIT 54 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GITDE LKDKP + F + + + HN FD F+ Sbjct: 55 ELTGITDEMLKDKPFIEEVLPRFIE--FAGDDVIMGHNIMFDYSFLKQNAINQKLKFDKM 112 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ K L LC YGI + H A D+ + S +Y +M Sbjct: 113 GIDTLKIARKTLKG-LESRGLEYLCNYYGIA--DENHHRAFNDAEVTSKLYNVLMEKFGT 169 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 + G FK +K + R K + E + I L KN Sbjct: 170 ESPGLFEPYQLVFKAKKMQ----PITDRQKKYLKDLMVYHKIEMNFNIDELSKN 219 >gi|297249562|ref|ZP_06933263.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str. B3196] gi|297173431|gb|EFH32795.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str. B3196] gi|326554073|gb|ADZ88712.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90] Length = 235 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 20 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 77 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + + E +AHNA+FD+ +I E ++ D LD Sbjct: 78 VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 136 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + C +HGAL D++L + +Y+ + Sbjct: 137 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 194 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K + + K ++ Sbjct: 195 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 231 >gi|257466340|ref|ZP_05630651.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] gi|315917497|ref|ZP_07913737.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] gi|313691372|gb|EFS28207.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] Length = 1450 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 98/218 (44%), Gaps = 8/218 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V+D+ET G +S +IIEIGAV++++ +R F + P G+ + + ITD Sbjct: 424 FVVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDR-FSQLVNP-GQSIPQNIVDVTNITDS 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++++P+ + +F DF + +AHNA FD+G++ + ++ +PS I Sbjct: 482 MVQNEPNIEEVLPKFLDFIEG--SILVAHNADFDIGYLKQQCKQQGYSDFNPSFIDTLQM 539 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L L K+ G++ + H A+ D ++++ + + Sbjct: 540 AKDLYPELKQFGLGPLNKKLGLS--LENHHRAVDDCQATGNMFLIFLDKYLDQGIHKLSE 597 Query: 189 EDRFF--KEEKKTVPNISLLKRDKPLFTRITKEELDEH 224 F +K+ N+ LL +D+ + + D H Sbjct: 598 MQGAFPVNTKKQNTRNVMLLVKDRVGLENLNRLVSDAH 635 >gi|322689603|ref|YP_004209337.1| exonuclease [Bifidobacterium longum subsp. infantis 157F] gi|320460939|dbj|BAJ71559.1| putative exonuclease [Bifidobacterium longum subsp. infantis 157F] Length = 235 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 15/212 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + I EIGAV + + ++ FQ + P R + L GITD Sbjct: 34 YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + D + F + + HN FD+ F++ + I + Sbjct: 92 MVADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADY 151 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L R+GI +H AL D+ + M ++ Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFGIA--DNEEHRALSDAIQTQQCFEWM------RHY 203 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 + +E + ++ N + + + + R Sbjct: 204 VTEHHESEAIRWKQAPAKNSAEILHQQLVVKR 235 >gi|78044638|ref|YP_360855.1| putative DNA polymerase III, epsilon subunit [Carboxydothermus hydrogenoformans Z-2901] gi|77996753|gb|ABB15652.1| putative DNA polymerase III, epsilon subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 222 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 6/175 (3%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTGL + D II IGAV++++ + T F ++ P R+ +L GI+ + Sbjct: 40 VIDLETTGLKPFQGDEIIAIGAVKIINGNITRPAFHAYVNPQ-REIPEVVQRLTGISPKT 98 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ P ++ + DF + N + K +D Sbjct: 99 VQNAPPLTNTLTTLLDFARNSVIVGHSVNFDLAFLNKHLSSLTGKKLTPRLLDTVDLGIY 158 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + P+ + + IS + +H AL D+ + + V++ + N Sbjct: 159 LFPREPNYSLENFA----QKFAISLQGRHTALGDAVICAKVFLNFLKILELKNIN 209 >gi|83319984|ref|YP_424323.1| DNA polymerase III, alpha subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283870|gb|ABC01802.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 1479 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 6/207 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ KM + FD+ETTGL + D IIE GA+E + + + + P + K Sbjct: 427 LKDAKM--VFFDLETTGLSPELDEIIEFGAIEYNFKTGERKKIDILIKPKSKLKD-FTKK 483 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L I +E L++KP F E + A +AHNA FD F++ +++ L+ + Sbjct: 484 LTNINEEMLENKPGIEVAFKEINQVIKD--AILVAHNANFDYTFLSHWSEKLGYGKLENT 541 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQ 180 I + L SL KR I+ H D+ +L+D+Y +M+ + Sbjct: 542 IIDTLTISRIIYPELKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERMLDDTRKK 601 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLK 207 ++ D+ N K Sbjct: 602 TKITIDSDWDKINPLNNIDNLNYHKNK 628 >gi|261416032|ref|YP_003249715.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372488|gb|ACX75233.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326359|gb|ADL25560.1| putative DnaQ family exonuclease/DinG family helicase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 905 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 78/216 (36%), Gaps = 6/216 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGLD + D IIE+ V + + P+ + P L GI+ Sbjct: 7 FVALDLETTGLDFEKDEIIEVALVRFENGEP-KENLDFLVKPSAVELRPFIETLTGISKA 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ F++I + F + +AHNA FD F+ ++ Sbjct: 66 DLESASDFATIAGQICSFVGD--LPIVAHNAVFDSKFLKQTFTKVGISYDSHVFWDSLTL 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L++L + I H AL D+ +++K + S ++ Sbjct: 124 SRIAFQDVPNHRLDTLVQELNIE--RSRAHRALPDADACGRLFVKALEKISTMDPWIYDA 181 Query: 189 EDRFFKEEK-KTVPNISLLKRDKPLFTRITKEELDE 223 + K +T+ + K P + T L+ Sbjct: 182 LSQVAKGSGYETLFTSKVEKLSPPKYKLPTAPALEA 217 >gi|319937397|ref|ZP_08011804.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1] gi|319807763|gb|EFW04356.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1] Length = 1438 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 4/172 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTGL +D I E GAV++ + + R Q + PN R S + L IT+E Sbjct: 397 FISFDLETTGLSVMDDDITEFGAVKIKNGQEIGR-LQSLIKPNKR-ISQKITNLTHITNE 454 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P+ + +FF + +AHNA FDVGF+N LQR + L I Sbjct: 455 DVKDAPTIQEYIPKILEFFGD--DVIVAHNATFDVGFLNEILQRHGYEKLKNPAIDSLAL 512 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + L ++ + Y I H A D+ +L+ V+ M+ Q Sbjct: 513 AWKLLPQLKGFRLGNVARYYRIAYDGDDAHRADYDAEVLAGVFNMMLHDMMQ 564 >gi|167464458|ref|ZP_02329547.1| DNA polymerase III PolC [Paenibacillus larvae subsp. larvae BRL-230010] Length = 686 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL N++IIEI V++ D + R + F+ P+ K +L ITDE Sbjct: 421 YVVFDIETTGLSVINNKIIEIAGVKMKDGKEIGR-YTTFIDPH-EKIPYNIQQLTNITDE 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + +F +F + A +AHNA+FD+GFI A L+ I L + Sbjct: 479 MVQGAPDIAEELPKFVEFVGD--AVLVAHNARFDMGFIQANLKNIGMPELPNPSLDTLEL 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L ++ ++ + H A+ D+ L + ++ + N Sbjct: 537 ARLLFPSLKNHRLNTLADKFKVS--LENHHRAIDDTVALMHILNHLLQEAEEQNLTQLNR 594 Query: 189 EDRFFKEEKKTVPNIS 204 + ++ + Sbjct: 595 LNDHVGKDLRNTRPFH 610 >gi|261750330|ref|ZP_05994039.1| DNA polymerase III [Brucella suis bv. 5 str. 513] gi|261740083|gb|EEY28009.1| DNA polymerase III [Brucella suis bv. 5 str. 513] Length = 233 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 5/180 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 18 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 75 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + + E +AHNA+FD+ +I E ++ D LD Sbjct: 76 VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 134 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + C +HGAL D++L + +Y+ + Sbjct: 135 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 192 >gi|119357378|ref|YP_912022.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides DSM 266] gi|119354727|gb|ABL65598.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides DSM 266] Length = 219 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 7/171 (4%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV + +R +Q + P G + S GIT+E Sbjct: 10 VVLDFETTGLSPQYGDRAIEIGAVLVEHGEIVDR-YQKLMNP-GFRISRFIESYTGITNE 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L +P + +EF +F N AHNA FD F++ EL+R + + + L Sbjct: 68 MLSGQPCCEEVMTEFSEFIAGHNIV--AHNASFDRRFLDFELKRAKRVY-EGACCCSLLV 124 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 R S + L +L GI H AL D+ + + +++ M+ Sbjct: 125 SRRIYQDSPNHKLQTLVSHAGIPEIGS-FHRALADAEMTAHLWMSMIDRIR 174 >gi|323140812|ref|ZP_08075727.1| exonuclease, DNA polymerase III, epsilon subunit family [Phascolarctobacterium sp. YIT 12067] gi|322414694|gb|EFY05498.1| exonuclease, DNA polymerase III, epsilon subunit family [Phascolarctobacterium sp. YIT 12067] Length = 304 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 6/164 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTGL +ND I EI A++ + + + F + P +L GI D + Sbjct: 24 VLDIETTGLSPQNDYITEISAIKYRNNRRVDE-FSSLVKPEL-SIPYYITRLTGINDAMV 81 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D P+ + F DF + +N FD+ FI L L + Sbjct: 82 ADAPAIDEVILSFMDFLAD--DIIAGYNVAFDLSFIAENLAGHYAKRLANDYVDVMKLAQ 139 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R ++ + + I H AL+D ++ + Y K+ Sbjct: 140 NELPFLGRYKQTAVAEYFNIA--TAGAHRALVDCNICNGCYQKL 181 >gi|149183493|ref|ZP_01861922.1| DNA polymerase III PolC [Bacillus sp. SG-1] gi|148848805|gb|EDL63026.1| DNA polymerase III PolC [Bacillus sp. SG-1] Length = 1375 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 6/175 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + IIE+ AV++ D +R F+ F P+ S + L GITD+ Sbjct: 425 YVVFDVETTGLSAMYNTIIELAAVKIRDGEIIDR-FESFANPH-HPLSATTINLTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + F D +A +AHNA FD+GF+N + D + I Sbjct: 483 MVEGAPEVAEALKAFKD--WAGDAVLVAHNASFDMGFLNVGYGKAGLDKAENPVIDTLEL 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + LN+L K++ + H A+ D+ + +KM+ ++ Sbjct: 541 ARLLYPEMKNHRLNTLAKKF--DVELTQHHRAIYDAEATGYLLLKMLKDANEKGI 593 >gi|17988995|ref|NP_541628.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str. 16M] gi|260756615|ref|ZP_05868963.1| DNA polymerase III [Brucella abortus bv. 6 str. 870] gi|260760045|ref|ZP_05872393.1| DNA polymerase III [Brucella abortus bv. 4 str. 292] gi|260763284|ref|ZP_05875616.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59] gi|260882432|ref|ZP_05894046.1| DNA polymerase III [Brucella abortus bv. 9 str. C68] gi|261216075|ref|ZP_05930356.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya] gi|261217238|ref|ZP_05931519.1| DNA polymerase III [Brucella ceti M13/05/1] gi|261220458|ref|ZP_05934739.1| DNA polymerase III [Brucella ceti B1/94] gi|261313312|ref|ZP_05952509.1| DNA polymerase III [Brucella pinnipedialis M163/99/10] gi|261318701|ref|ZP_05957898.1| DNA polymerase III [Brucella pinnipedialis B2/94] gi|261320109|ref|ZP_05959306.1| DNA polymerase III [Brucella ceti M644/93/1] gi|265986499|ref|ZP_06099056.1| DNA polymerase III [Brucella pinnipedialis M292/94/1] gi|265992959|ref|ZP_06105516.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether] gi|265996191|ref|ZP_06108748.1| DNA polymerase III [Brucella ceti M490/95/1] gi|17984832|gb|AAL53892.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str. 16M] gi|260670363|gb|EEX57303.1| DNA polymerase III [Brucella abortus bv. 4 str. 292] gi|260673705|gb|EEX60526.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59] gi|260676723|gb|EEX63544.1| DNA polymerase III [Brucella abortus bv. 6 str. 870] gi|260871960|gb|EEX79029.1| DNA polymerase III [Brucella abortus bv. 9 str. C68] gi|260917682|gb|EEX84543.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya] gi|260919042|gb|EEX85695.1| DNA polymerase III [Brucella ceti B1/94] gi|260922327|gb|EEX88895.1| DNA polymerase III [Brucella ceti M13/05/1] gi|261292799|gb|EEX96295.1| DNA polymerase III [Brucella ceti M644/93/1] gi|261297924|gb|EEY01421.1| DNA polymerase III [Brucella pinnipedialis B2/94] gi|261302338|gb|EEY05835.1| DNA polymerase III [Brucella pinnipedialis M163/99/10] gi|262550488|gb|EEZ06649.1| DNA polymerase III [Brucella ceti M490/95/1] gi|262763829|gb|EEZ09861.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether] gi|264658696|gb|EEZ28957.1| DNA polymerase III [Brucella pinnipedialis M292/94/1] Length = 233 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 18 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 75 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + + E +AHNA+FD+ +I E ++ D LD Sbjct: 76 VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 134 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + C +HGAL D++L + +Y+ + Sbjct: 135 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 192 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K + + K ++ Sbjct: 193 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 229 >gi|261753605|ref|ZP_05997314.1| DNA polymerase III [Brucella suis bv. 3 str. 686] gi|261743358|gb|EEY31284.1| DNA polymerase III [Brucella suis bv. 3 str. 686] Length = 233 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 18 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 75 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + + E +AHNA+FD+ +I E ++ D LD Sbjct: 76 VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 134 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + C +HGAL D++L + +Y+ + Sbjct: 135 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARMGHRHGALEDAYLTAGLYLHQQGVAKPL 192 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K + + K ++ Sbjct: 193 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 229 >gi|81428867|ref|YP_395867.1| DNA polymerase III PolC [Lactobacillus sakei subsp. sakei 23K] gi|123564054|sp|Q38W73|DPO3_LACSS RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|78610509|emb|CAI55560.1| DNA-directed DNA polymerase III, polC-type [Lactobacillus sakei subsp. sakei 23K] Length = 1446 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 6/164 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL + D IIE+ AV++ D +F F+ P R S +L IT+E Sbjct: 425 YVIFDVETTGLSAVYDSIIELAAVKMRDGEVVA-SFDEFIDPE-RPLSAFTTQLTSITNE 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 + + + + F + +A HN FD+GF+NA +R + D +D ++ Sbjct: 483 MVHGAKKEAEVLAMFKE--FTGDAVLAGHNVSFDMGFLNAGYERNDIDLIDNPVIDTLEL 540 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + ++ + + D + + + HR+ A +LL + Sbjct: 541 SRMLHPEYKNHKLDSLTKRYKINLEHHHRANADAESTGYLLYKL 584 >gi|293363994|ref|ZP_06610730.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma alligatoris A21JP2] gi|292552484|gb|EFF41258.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma alligatoris A21JP2] Length = 1432 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 91/237 (38%), Gaps = 14/237 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FDIETTGL + IIE GA + + S R Q F+ + S L GITD+ Sbjct: 401 YISFDIETTGLSPRYHEIIEFGASIIKNGSIVARE-QFFIK-ASKPLSSFTTNLTGITDK 458 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+++ E E N +AHNA+FD+ F+ +L S + + Sbjct: 459 MLQEEGIELKTALERILKLFE-NKIALAHNAQFDMNFVFQKLLDNCYAIPSISFVDTLMI 517 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S++ L GI S H A D+ +L+ +I + +Q+N ++ Sbjct: 518 SRIIFPNKSKHRLGDYTSNLGINYSVDDAHRADYDAEILAQAWIASISHLAQLNLNNLSD 577 Query: 189 EDRFFKEE-----------KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 + I L K K + +T+ D ++ L K+ Sbjct: 578 LHNYQNSNLHAKKFSNEVSIIAKNQIGLKKLFKLVTKTLTERFFDSPKLFLEDLEKD 634 >gi|290969003|ref|ZP_06560538.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Megasphaera genomosp. type_1 str. 28L] gi|290780959|gb|EFD93552.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Megasphaera genomosp. type_1 str. 28L] Length = 869 Score = 72.3 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 82/234 (35%), Gaps = 17/234 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+E+TG + D II+I AV L F +L P+ A+ Sbjct: 501 IVFDVESTGTNPLQDEIIQIAAVRLRTDGTIQEKFMTYLRPSRTVGDSYAIHGLSDEFLQ 560 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++ + +++ + HN +D+ + +EL R++ +DTL I Sbjct: 561 KNGTDARRALQNFLT---FAKDSLIVGHNVLYDISILQSELSRLSLPCPTEMPYMDTLDI 617 Query: 130 ARRKHPSSRNDLNSLCKRYGITIS---HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 RR +P + T H + L + LL V + ++ + Sbjct: 618 YRRFYPDLEKYTLEFLSHHFSTAHKPSHNAWDDILATADLLQTVLQEKILSQTATRRELF 677 Query: 187 TNEDR---FFKEEKKTVPNISLLKRDKPLFTRITKEELDEH---DKTIQTLGKN 234 T F E+ + S R L TRI H + + + Sbjct: 678 TTYAHRFISFSEKISALRRQSYSLRPHELLTRIM-----LHCGVKEYYAKIDEQ 726 >gi|225629116|ref|ZP_03787149.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Brucella ceti str. Cudo] gi|237817070|ref|ZP_04596062.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella abortus str. 2308 A] gi|225615612|gb|EEH12661.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Brucella ceti str. Cudo] gi|237787883|gb|EEP62099.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella abortus str. 2308 A] Length = 248 Score = 71.9 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 33 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 90 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + + E +AHNA+FD+ +I E ++ D LD Sbjct: 91 VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 149 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + C +HGAL D++L + +Y+ + Sbjct: 150 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 207 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K + + K ++ Sbjct: 208 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 244 >gi|332670685|ref|YP_004453693.1| DNA polymerase III subunit epsilon [Cellulomonas fimi ATCC 484] gi|332339723|gb|AEE46306.1| DNA polymerase III, epsilon subunit [Cellulomonas fimi ATCC 484] Length = 620 Score = 71.9 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 65/198 (32%), Gaps = 4/198 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + I EIGAV++ FQ + P G P L GIT Sbjct: 43 FVVVDLETTGGTPADCAITEIGAVKVRGGQVLGE-FQTLVDPGG-PVPPYIQVLTGITTS 100 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P ++ F + +A +AHNA FDVGF+ A R + Sbjct: 101 MLVGAPRIETVLPSFLE--FAGDAVLVAHNAPFDVGFLKAAAARTGHPWPGNRVLDTVRL 158 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R + + H AL D+ DV ++ + + Sbjct: 159 ARRAVTRDEAPNHKLSTLAALFHATVTPNHRALSDARATVDVLHALLGRLGPLGVTHLED 218 Query: 189 EDRFFKEEKKTVPNISLL 206 V L Sbjct: 219 LATATDPVPADVRRKRTL 236 >gi|256059183|ref|ZP_05449390.1| DNA polymerase III, epsilon chain [Brucella neotomae 5K33] Length = 224 Score = 71.9 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 125 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + C +HGAL D++L + +Y+ + Sbjct: 126 FYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 183 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K + + K ++ Sbjct: 184 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 220 >gi|229545209|ref|ZP_04433934.1| conserved hypothetical protein [Enterococcus faecalis TX1322] gi|229309754|gb|EEN75741.1| conserved hypothetical protein [Enterococcus faecalis TX1322] Length = 175 Score = 71.9 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 6/164 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + D F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 L+ L + G++ + H A D+ + +++ + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLL 170 >gi|308177615|ref|YP_003917021.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] gi|307745078|emb|CBT76050.1| putative DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] Length = 412 Score = 71.9 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 87/257 (33%), Gaps = 35/257 (13%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL DRI EI V + +++ + P +H I Sbjct: 8 IVDTETTGLFPGGNDRIAEIAIVTMNRQGTIVDSWETLINPQR---DLGKQSIHRIQSRD 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDTL 127 + D PSF + E + +AHN FD F+ AE ++ + + + T+ Sbjct: 65 VLDAPSFKDLAEELHWRLSG--TVLVAHNLSFDSRFLEAEFRKCGLPVPETFLAQGMCTM 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++ R + L C +GI + + ++ +++ Sbjct: 123 RMSHRYLQGAGRSLQDCCDSFGIDLQQAHSAVGDATATAT------LLSRYMELDPDEPE 176 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL------------GKN- 234 + R + R P+ + E H ++ L +N Sbjct: 177 WDGRLRLAAAGRWFDSMPRSRVAPVKRSQYRTESAGH--FLEKLAARLPEFSGTATEENY 234 Query: 235 ------AIWDRYISSNQ 245 A+ DRY+S+++ Sbjct: 235 FAVLDLALMDRYVSAHE 251 >gi|84385238|ref|ZP_00988270.1| DNA polymerase III, alpha subunit [Vibrio splendidus 12B01] gi|84379835|gb|EAP96686.1| DNA polymerase III, alpha subunit [Vibrio splendidus 12B01] Length = 207 Score = 71.9 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 55/195 (28%), Positives = 82/195 (42%), Gaps = 15/195 (7%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL DR IEIGAV+L++ TFQ + P G + S GI++ Sbjct: 10 IVLDFETTGLSPNMGDRAIEIGAVKLVNGEVV-DTFQQLMNP-GFRVSGFIESYTGISNR 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L S S + EF DF +AHNA FD F++AEL I +D + + Sbjct: 68 MLSTAASCSEVMDEFADFIQGSQ--LVAHNASFDKRFLDAELDFIGRDYTGKFACSMLIA 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG------SQI 181 + P+ + K + + H AL DS + + +++ M+ Q Sbjct: 126 RRLIQDAPTHKLGDLVRFKNI---DNDGTFHRALADSEMTARLWLLMIDELQSDHGIQQP 182 Query: 182 NFGFKTNEDRFFKEE 196 +F + K Sbjct: 183 SFQLMQKISKTAKGS 197 >gi|256961321|ref|ZP_05565492.1| DNA polymerase III [Enterococcus faecalis Merz96] gi|293383606|ref|ZP_06629516.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis R712] gi|293387281|ref|ZP_06631838.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis S613] gi|312906156|ref|ZP_07765168.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis DAPTO 512] gi|312909501|ref|ZP_07768356.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis DAPTO 516] gi|256951817|gb|EEU68449.1| DNA polymerase III [Enterococcus faecalis Merz96] gi|291079118|gb|EFE16482.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis R712] gi|291083318|gb|EFE20281.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis S613] gi|310627802|gb|EFQ11085.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis DAPTO 512] gi|311290174|gb|EFQ68730.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis DAPTO 516] Length = 929 Score = 71.9 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + + F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQEGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSAF 201 >gi|254699857|ref|ZP_05161685.1| DNA polymerase III, epsilon chain [Brucella suis bv. 5 str. 513] Length = 224 Score = 71.9 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 5/180 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 125 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + C +HGAL D++L + +Y+ + Sbjct: 126 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 183 >gi|291530449|emb|CBK96034.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium siraeum 70/3] Length = 1605 Score = 71.9 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 44/98 (44%), Positives = 55/98 (56%), Gaps = 4/98 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFDIETTGL N+RI EIGAV+L + +R F F+ P +L GITD+ Sbjct: 592 IVFDIETTGLHPANERITEIGAVKLRNMEIVDR-FSTFVNP-MMPIPSNITELTGITDDM 649 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 + D P+ S+F F N+ AHNAKFDV FI Sbjct: 650 VADAPTEDVAVSDFMAFC--GNSPVCAHNAKFDVSFIR 685 >gi|303238571|ref|ZP_07325105.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2] gi|302593969|gb|EFL63683.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2] Length = 1446 Score = 71.9 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 79/206 (38%), Gaps = 7/206 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG ++I E+G ++L D ++ F F+ P + +++ ITD Sbjct: 423 YCVLDLETTGFSPLTEKITEVGIMKLKDGKVIDQ-FSCFVNPE-KPIPARVVEVTNITDY 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D + +F + +F + +AHNA+FD+GF+ + + + +L+ Sbjct: 481 MVQDAETIEKVFPKMLEFIEG--SVLVAHNAEFDIGFLKHNAKVLGYNFDFTYLDTLSLA 538 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + I H AL D V+ M+ + + Sbjct: 539 KEIFPDYKSYKL---GRIAKNLGIKVDVAHRALDDVDTTVKVFNIMLEKLKEKGVQTLED 595 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 D + +E+ LK + Sbjct: 596 VDTYSSDEEAKKSEYKKLKTYHAIIL 621 >gi|261879422|ref|ZP_06005849.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella bergensis DSM 17361] gi|270333990|gb|EFA44776.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella bergensis DSM 17361] Length = 287 Score = 71.9 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 70/200 (35%), Gaps = 6/200 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+FD+ETTGLD DRII+I +++ R +F+ P + P +L ITD+ Sbjct: 10 IIFDLETTGLDLATDRIIQISYIKVDPQGNEERK-SLFVNPE-KPIPPFVQELTHITDDM 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P+F I + F + N L+ R+ID +I Sbjct: 68 VKDAPTFKQIAKSLQETFAGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFQRCRLIDAQNI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + P + R+ A Y + + N + Sbjct: 128 FHKMEP----RNLAAAYRFYTGNKMEDDFQAHRADEDTEATYRVLQGQLDKYNPENPADP 183 Query: 190 DRFFKEEKKTVPNISLLKRD 209 ++ + + S + + Sbjct: 184 EKTLANDMDVLAEFSTMSNN 203 >gi|229820392|ref|YP_002881918.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM 12333] gi|229566305|gb|ACQ80156.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM 12333] Length = 590 Score = 71.9 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 62/174 (35%), Gaps = 4/174 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG D I EIGAV + + P GR P L GIT+ Sbjct: 32 FVVVDLETTGGSPNADAITEIGAVRVRGGVVEGE-LGTLVDP-GRSIPPTITVLTGITNA 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + F + A +AHNA+FD GF+ +R+ P + Sbjct: 90 MVIGAPPIEEVLPSFLE--FAHGAVLVAHNARFDTGFLRVAAERMGLTWPKPLVVDTVQL 147 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R + S H AL D+ DV ++ + + Sbjct: 148 ARRVVSRDEAPNHRLGSLARLFHASVTPDHRALTDARATVDVLHGLLARMAPLG 201 >gi|288819191|ref|YP_003433539.1| DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus TK-6] gi|46849522|dbj|BAD17850.1| putative DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus] gi|288788591|dbj|BAI70338.1| DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus TK-6] gi|308752773|gb|ADO46256.1| DNA polymerase III, epsilon subunit [Hydrogenobacter thermophilus TK-6] Length = 191 Score = 71.9 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 6/168 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG D ++ IIEI V + T+R F + P G +KL GIT+ Sbjct: 10 FVSIDIETTGFDEESSDIIEIACVRVEGCIITDR-FSTLVNP-GYLLPDRIVKLTGITNA 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + KP+ + F F + + + H+ + D+ FI+ + + I Sbjct: 68 MIVGKPNIYEVLPHFLRFVGD--SIIVGHHVEKDMAFIDKAYRVLYGKKFKHPHICTLNL 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 R L L + I H AL D+ + ++I+++ Sbjct: 126 ARNILPDLKRYSLKDLADHFNIRYRRL--HRALDDAETTAYLFIELLN 171 >gi|291557938|emb|CBL35055.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium siraeum V10Sc8a] Length = 1605 Score = 71.9 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 44/98 (44%), Positives = 55/98 (56%), Gaps = 4/98 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFDIETTGL N+RI EIGAV+L + +R F F+ P +L GITD+ Sbjct: 592 IVFDIETTGLHPANERITEIGAVKLRNMEIVDR-FSTFVNP-MMPIPSNITELTGITDDM 649 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 + D P+ S+F F N+ AHNAKFDV FI Sbjct: 650 VADAPTEDVAVSDFMAFC--GNSPVCAHNAKFDVSFIR 685 >gi|195952795|ref|YP_002121085.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1] gi|195932407|gb|ACG57107.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1] Length = 196 Score = 71.9 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTGL+ IIEI A + T + F + P G ++ GIT+ Sbjct: 12 YVVLDIETTGLNPDEHEIIEIFAFLVEKERIT-KQFHRLINP-GFFIPRRITEITGITNA 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L +P I +F +F + + HN KFD+ F++ L+ I Sbjct: 70 MLVGQPKVEGIIYDFDNFVKD--YIIVGHNVKFDLSFLSKAYSIYLHKKLNSPNICTLEL 127 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + L+++ + I H A D+ L +++ K+M + Sbjct: 128 SKKLIPNLKSYKLSAVADYFNIKYERL--HRAKDDALLTYNIFNKLMDIIRR 177 >gi|148656033|ref|YP_001276238.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1] gi|148568143|gb|ABQ90288.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1] Length = 956 Score = 71.9 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 11/180 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D+ETTGL++ D IIEI AV+ + + TF + P + +L GIT + Sbjct: 5 YIAIDVETTGLEAGVDEIIEIAAVKF-NADEVLETFSTLVQP-VHSLPLNSSRLTGITAD 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ + F F +N + HN +FD+ + A+ R+ + D + Sbjct: 63 MLASAPRFAEVAPRFAAFL--KNYPLVGHNVEFDLRMLRAQGMRLPQPAFDTFELA---- 116 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L++L G I H H AL D+ + +++ ++ + Sbjct: 117 -TLLMPRTPAYRLSALAATLG--IHHDEAHRALSDADVTRQIFLYLLRRIEALPLDDLNE 173 >gi|315146656|gb|EFT90672.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX4244] Length = 929 Score = 71.9 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D +DRII+ G V + + F + PN + + L GI++ Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQEGKIIAN-FATDVNPN-QVVPKQIQSLTGISNT 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + + + ++AHN FD F+ EL R PL I Sbjct: 71 QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L+ L + G++ + H A D+ + +++ + + + Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSH--ENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 189 EDRFFKEEKKTVPNI 203 ++ + Sbjct: 187 IAELSQQTARETSAF 201 >gi|78777649|ref|YP_393964.1| DNA polymerase III subunit epsilon [Sulfurimonas denitrificans DSM 1251] gi|78498189|gb|ABB44729.1| Exonuclease [Sulfurimonas denitrificans DSM 1251] Length = 205 Score = 71.9 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 7/175 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL+ K D I+ IGAV++ + T++TF+VFL N ++ S ++K+HGI Sbjct: 34 YVVFDTETTGLNPKVDEILSIGAVKIKDNRVLTSQTFEVFLQ-NSKEISSNSIKIHGIRP 92 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 LKD + EF +F I + +FDV IN + + L I + Sbjct: 93 FDLKDAKTTKEGIVEFLNFIGS--RPLIGYYLEFDVAMINRYTKPLLGINLPNKMIEVSE 150 Query: 128 SIARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + P DL +I + H A+ D+ + + +Y+K+ Sbjct: 151 IYFDKTISLIPQGNIDLRFDTILKNCSIPNMGAHNAVNDAIMTAMIYLKLTKEKE 205 >gi|148544145|ref|YP_001271515.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri DSM 20016] gi|184153518|ref|YP_001841859.1| ATP-dependent helicase [Lactobacillus reuteri JCM 1112] gi|227364574|ref|ZP_03848635.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri MM2-3] gi|325682311|ref|ZP_08161828.1| ATP-dependent DNA helicase DinG [Lactobacillus reuteri MM4-1A] gi|148531179|gb|ABQ83178.1| DnaQ family exonuclease/DinG family helicase, putative [Lactobacillus reuteri DSM 20016] gi|183224862|dbj|BAG25379.1| ATP-dependent helicase [Lactobacillus reuteri JCM 1112] gi|227070411|gb|EEI08773.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri MM2-3] gi|324978150|gb|EGC15100.1| ATP-dependent DNA helicase DinG [Lactobacillus reuteri MM4-1A] Length = 954 Score = 71.9 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 50/213 (23%), Positives = 77/213 (36%), Gaps = 8/213 (3%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG + DRII+IG V + D F+ + P K ++L GI D+ Sbjct: 21 VVDLETTGTNVNHGDRIIQIGCVLVQDGEII-NHFETKINP-REKIPRSIVQLTGIEDKD 78 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P F I + E AHN FD F+NAEL+R L I Sbjct: 79 VRKAPLFEDIAGTIYSLLAETTFV--AHNVNFDFPFLNAELERAGYPSLSIPAIDTVTLS 136 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGFKTN 188 + L L I H H A+ D+ +D+ ++ + Sbjct: 137 QILLPTAKSFRLRDLTSSLHIEHDHP--HSAVSDAEATADLLNDLLKRVQELPTLTLEKI 194 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 ++T + + + EEL Sbjct: 195 TQLKLNLPQQTAGVFDAELQRRRKSPQPLSEEL 227 >gi|62317520|ref|YP_223373.1| exonuclease [Brucella abortus bv. 1 str. 9-941] gi|83269503|ref|YP_418794.1| DNA polymerase III subunit epsilon:exonuclease [Brucella melitensis biovar Abortus 2308] gi|148557905|ref|YP_001257609.1| putative exonuclease [Brucella ovis ATCC 25840] gi|189022776|ref|YP_001932517.1| DNA polymerase III, epsilon subunit [Brucella abortus S19] gi|225686408|ref|YP_002734380.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Brucella melitensis ATCC 23457] gi|254691019|ref|ZP_05154273.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 6 str. 870] gi|254695674|ref|ZP_05157502.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 3 str. Tulya] gi|254698803|ref|ZP_05160631.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 2 str. 86/8/59] gi|254705882|ref|ZP_05167710.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis M163/99/10] gi|254711110|ref|ZP_05172921.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis B2/94] gi|254712430|ref|ZP_05174241.1| DNA polymerase III, epsilon chain [Brucella ceti M644/93/1] gi|254715502|ref|ZP_05177313.1| DNA polymerase III, epsilon chain [Brucella ceti M13/05/1] gi|254732250|ref|ZP_05190828.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 4 str. 292] gi|256015402|ref|YP_003105411.1| exonuclease, putative [Brucella microti CCM 4915] gi|256029491|ref|ZP_05443105.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis M292/94/1] gi|256111454|ref|ZP_05452474.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 3 str. Ether] gi|256157686|ref|ZP_05455604.1| DNA polymerase III, epsilon chain [Brucella ceti M490/95/1] gi|256253341|ref|ZP_05458877.1| DNA polymerase III, epsilon chain [Brucella ceti B1/94] gi|256256204|ref|ZP_05461740.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 9 str. C68] gi|256262453|ref|ZP_05464985.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9] gi|260167417|ref|ZP_05754228.1| DNA polymerase III, epsilon chain [Brucella sp. F5/99] gi|260544758|ref|ZP_05820579.1| DNA polymerase III [Brucella abortus NCTC 8038] gi|260564713|ref|ZP_05835198.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M] gi|261756828|ref|ZP_06000537.1| DNA polymerase III [Brucella sp. F5/99] gi|62197713|gb|AAX76012.1| exonuclease, hypothetical [Brucella abortus bv. 1 str. 9-941] gi|82939777|emb|CAJ12783.1| DNA polymerase III, epsilon subunit:Exonuclease [Brucella melitensis biovar Abortus 2308] gi|148369190|gb|ABQ62062.1| putative exonuclease [Brucella ovis ATCC 25840] gi|189021350|gb|ACD74071.1| DNA polymerase III, epsilon subunit [Brucella abortus S19] gi|225642513|gb|ACO02426.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Brucella melitensis ATCC 23457] gi|255998062|gb|ACU49749.1| exonuclease, putative [Brucella microti CCM 4915] gi|260098029|gb|EEW81903.1| DNA polymerase III [Brucella abortus NCTC 8038] gi|260152356|gb|EEW87449.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M] gi|261736812|gb|EEY24808.1| DNA polymerase III [Brucella sp. F5/99] gi|263092188|gb|EEZ16485.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9] gi|326410781|gb|ADZ67845.1| DNA polymerase III, epsilon subunit [Brucella melitensis M28] Length = 224 Score = 71.9 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 125 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + C +HGAL D++L + +Y+ + Sbjct: 126 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 183 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K + + K ++ Sbjct: 184 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 220 >gi|23500370|ref|NP_699810.1| exonuclease [Brucella suis 1330] gi|161620685|ref|YP_001594571.1| exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC 23365] gi|254702995|ref|ZP_05164823.1| exonuclease, RNase T and DNA polymerase III [Brucella suis bv. 3 str. 686] gi|260568091|ref|ZP_05838560.1| DNA polymerase III [Brucella suis bv. 4 str. 40] gi|23463988|gb|AAN33815.1| exonuclease, putative [Brucella suis 1330] gi|161337496|gb|ABX63800.1| Exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC 23365] gi|260154756|gb|EEW89837.1| DNA polymerase III [Brucella suis bv. 4 str. 40] Length = 224 Score = 71.5 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 125 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + C +HGAL D++L + +Y+ + Sbjct: 126 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARMGHRHGALEDAYLTAGLYLHQQGVAKPL 183 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K + + K ++ Sbjct: 184 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 220 >gi|315504521|ref|YP_004083408.1| DNA polymerase iii, epsilon subunit [Micromonospora sp. L5] gi|315411140|gb|ADU09257.1| DNA polymerase III, epsilon subunit [Micromonospora sp. L5] Length = 584 Score = 71.5 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 69/206 (33%), Gaps = 4/206 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG I EIGAV++ + + P G P L GIT Sbjct: 32 FVVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITQA 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + F +F ++ A +AHNA +DVGF+ A + +P + Sbjct: 90 MLLPAPPIEQVLPSFLEFISD--AVLVAHNAPYDVGFLKAACAKHGYRWPNPRVLDTAAL 147 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R + + + H AL D+ DV ++ G Sbjct: 148 ARRVLTRDEVPNRKLGTLAAYFRTATQPTHRALDDAKATVDVLHGLIGRLGGHRVGTVGE 207 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 F + T L P Sbjct: 208 AIEFARAVTPTQRRKRHLADGLPKVP 233 >gi|95929273|ref|ZP_01312017.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM 684] gi|95134771|gb|EAT16426.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM 684] Length = 217 Score = 71.5 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 7/166 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ET+G+ + DR IE+GAV++ D F+ + P G + S + GIT++ Sbjct: 11 IVLDFETSGMAPQRGDRAIEVGAVKVNDGRIV-DHFESLMNP-GFRVSSFIEEFTGITND 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P + +F +F A +AHNA FD F+ +E RI + L ++ Sbjct: 69 ELRRAPRCEEVMHQFSEFIGG--APLVAHNASFDQRFLKSEFARIGECKLLRFG--CSML 124 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR +P + N + Y S H AL D+ + + ++++M Sbjct: 125 VARRLYPEAPNHKLATLVAYKNLPSQGVFHRALADAEMTAHLWMEM 170 >gi|227546804|ref|ZP_03976853.1| DNA polymerase III, alpha subunit (gram-positive type) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|317481634|ref|ZP_07940669.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA] gi|322691564|ref|YP_004221134.1| exonuclease [Bifidobacterium longum subsp. longum JCM 1217] gi|227212766|gb|EEI80647.1| DNA polymerase III, alpha subunit (gram-positive type) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|316916924|gb|EFV38311.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA] gi|320456420|dbj|BAJ67042.1| putative exonuclease [Bifidobacterium longum subsp. longum JCM 1217] Length = 235 Score = 71.5 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 15/212 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + I EIGAV + + ++ FQ + P R + L GITD Sbjct: 34 YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + D + F + + HN FD+ F++ + I + Sbjct: 92 MVADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADY 151 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L R+GI +H AL D+ + M ++ Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFGIA--DNEEHRALSDAIQTQQCFEWM------RHY 203 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 + +E + ++ N + + + + R Sbjct: 204 VTEHHETEAIRWKQAPAKNSAEILHQQLVVKR 235 >gi|94263435|ref|ZP_01287248.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1] gi|94270278|ref|ZP_01291698.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1] gi|93450870|gb|EAT01889.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1] gi|93456165|gb|EAT06304.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1] Length = 238 Score = 71.5 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 9/182 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD E TGLD + D I+ IGAV + + TF V + P + ++ +H +T Sbjct: 40 FVVFDTELTGLDRRRDEIVSIGAVRINNLRIMVGDTFYVQVKP-SQALPKDSTLIHRLTP 98 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQ--NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 L D P +++ F D+ + ++ + F +P + + Sbjct: 99 HQLSDAPPLATVLPGFIDYCGQSLLVGHFVGLDVAFVNRACLRYYGARLSNPCLDTMHLA 158 Query: 126 TLSIARRKHPSSRNDLNSL-----CKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + + + + H A D+ + ++I ++ Sbjct: 159 QTHTEMQWQQYHDRFRMDISYNLAALGAKYGLPAFTHHNAYEDALQTAYLFIYLVKKMRS 218 Query: 181 IN 182 Sbjct: 219 QG 220 >gi|225419839|ref|ZP_03762142.1| hypothetical protein CLOSTASPAR_06180 [Clostridium asparagiforme DSM 15981] gi|225041521|gb|EEG51767.1| hypothetical protein CLOSTASPAR_06180 [Clostridium asparagiforme DSM 15981] Length = 255 Score = 71.5 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 73/199 (36%), Gaps = 4/199 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTGL+ + D+I EI A+ ++D + R F + P GR ++L GITD Sbjct: 16 YVAIDIETTGLEPRLDKITEIAALRVVDGAVEGR-FVTLVNP-GRPLGERIVELTGITDG 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P+ + F + + HN FD F+ D L Sbjct: 74 MLAGAPAIGDVIGPLVRFCGD--LPLLGHNILFDYSFLKRAAVNQGLDFQREGIDTLNLC 131 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 A +N + + L +HLL ++ G + F K+ Sbjct: 132 RAFMPGEHKKNLSAACAFYCIEQVEAHRAEADALSAHLLYQKLLEGRGEGREELFTPKSL 191 Query: 189 EDRFFKEEKKTVPNISLLK 207 + KE+ T L+ Sbjct: 192 IYKAKKEQPVTKRQKEYLQ 210 >gi|87120665|ref|ZP_01076558.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121] gi|86163893|gb|EAQ65165.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121] Length = 203 Score = 71.5 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 10/192 (5%) Query: 7 MR---KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 MR ++ D ETTGL + DR IEIGAV+L FQ + P G + Sbjct: 1 MRADSLVILDFETTGLSPDQGDRAIEIGAVKLEAGEVVAE-FQALMNP-GFSVTSFIEGY 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI++ L S + F +F + N IAHNA FD F++AE R N Sbjct: 59 TGISNAMLAQADSCREVMESFAEFIADNN--LIAHNASFDRRFLDAEFSRFNHVY-QGDF 115 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 L R + + L +L ++ H AL D+ + + +++ M+ + Sbjct: 116 SCSLLLSRRIFQDAPSHSLGALVNYINLS-GTGDFHRALYDAQMTAKLWMAMLDNIGERY 174 Query: 183 FGFKTNEDRFFK 194 F N ++ + Sbjct: 175 GLFDLNFEQIQQ 186 >gi|169629058|ref|YP_001702707.1| hypothetical protein MAB_1971c [Mycobacterium abscessus ATCC 19977] gi|169241025|emb|CAM62053.1| Probable DNA polymerase III epsilon subunit [Mycobacterium abscessus] Length = 600 Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 79/206 (38%), Gaps = 4/206 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG ++ND I EIGAV++ + P R P+ ++L GIT Sbjct: 28 FVVVDLETTGGSAENDAITEIGAVKVRGGEVLGE-LATLVDPQ-RSLPPQIVRLTGITSA 85 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + + F + + A +AHNA FD+GF+ A ++ D P+ + Sbjct: 86 MLVDAPPIAQVLPAFLE--FARGAVLVAHNAGFDIGFLKAAARQCGIDWPQPAVLCTVRL 143 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R ++ + S H AL D+ DV ++ G Sbjct: 144 ARRVLSRDEAPRVSLGALAQLLGASTTPNHRALDDARATVDVLHALISRVGNQGVGTMDE 203 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 R+ + + L P Sbjct: 204 LRRYRTQVPSALRGKRRLADAMPYAP 229 >gi|257876649|ref|ZP_05656302.1| DNA polymerase III [Enterococcus casseliflavus EC20] gi|257810815|gb|EEV39635.1| DNA polymerase III [Enterococcus casseliflavus EC20] Length = 918 Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 6/174 (3%) Query: 7 MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+ I V D+ETTG DS DRII+ G V + D NR F + P+ R+ S + +L Sbjct: 1 MKPIYAVVDLETTGTDSTIDRIIQFGCVLVQDGKIINR-FAADINPD-RRISKQIQRLTH 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT++ + P F I ++ N ++AHN FD F++ E R PL I Sbjct: 59 ITNQQVSKAPYFEDIADTIYNLL--SNTIFVAHNIYFDYHFLSNEFVRCGLPPLSIPGID 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 S L L G + + + + +YI+ ++ Sbjct: 117 TVELSQVFLPTESSFRLGDLADSIGFRHDNPHQADSDAEVTAALFLYIEAIMRQ 170 >gi|171056929|ref|YP_001789278.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6] gi|170774374|gb|ACB32513.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6] Length = 731 Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 8/176 (4%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGL+ D II+IGA + +F+ + P R P + +HGI + Sbjct: 543 VFDTETTGLNPSDGDEIIQIGATRISGGKLRRQESFEQLVDPQ-RPIPPAGIPIHGIKPD 601 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P+ + F Q+ +AHNA FD+ F+ L++ + ++DTL Sbjct: 602 MVAGQPTIDHVLPAFHA--FAQDTVLVAHNAAFDMRFLQ--LKQDRTGLVFDQPVLDTLL 657 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 ++ HP+ + +I+ +H AL D+ + ++V+++++ + Sbjct: 658 LSAVVHPNQESHRLEAIAER-FSITVVGRHTALGDAMVTAEVFVRLIPLLHAMGIE 712 >gi|56475526|ref|YP_157115.1| exonuclease [Aromatoleum aromaticum EbN1] gi|56311569|emb|CAI06214.1| conserved hypothetical protein, possibly exonuclease [Aromatoleum aromaticum EbN1] Length = 642 Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 5/99 (5%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGLD K D II+IGA +++ +F+ + P R SPE++K+HGIT + Sbjct: 454 VFDTETTGLDPSKGDEIIQIGATRIVNSKLLRQESFEQLIDPE-RGVSPESVKIHGITPD 512 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 L +P+ + + F Q+ IAHNA FD+ F+ Sbjct: 513 MLAGQPTIARVLPAFHA--FAQDTVLIAHNAAFDMRFLQ 549 >gi|86145733|ref|ZP_01064062.1| DNA polymerase III, alpha subunit [Vibrio sp. MED222] gi|218676919|ref|YP_002395738.1| DNA polymerase III, alpha subunit [Vibrio splendidus LGP32] gi|85836432|gb|EAQ54561.1| DNA polymerase III, alpha subunit [Vibrio sp. MED222] gi|218325187|emb|CAV27099.1| DNA polymerase III, alpha subunit [Vibrio splendidus LGP32] Length = 207 Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 15/195 (7%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL DR IEIGAV+L++ TFQ + P G + S GI++ Sbjct: 10 IVLDFETTGLSPNMGDRAIEIGAVKLVNGEVV-DTFQQLMNP-GFRVSGFIESYTGISNR 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L S S + EF +F +AHNA FD F++AEL I +D + + Sbjct: 68 MLSTAASCSEVMDEFANFIQGSQ--LVAHNASFDKRFLDAELDFIGRDYTGKFACSMLIA 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG------SQI 181 + P+ + K + + H AL DS + + +++ M+ Q Sbjct: 126 RRLIQDAPTHKLGDLVRFKNI---DNDGTFHRALADSEMTARLWLLMIDELQSDHGIQQP 182 Query: 182 NFGFKTNEDRFFKEE 196 +F + K Sbjct: 183 SFQLMQKISKTAKGS 197 >gi|194246482|ref|YP_002004121.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali] gi|193806839|emb|CAP18268.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali] Length = 1522 Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 5/172 (2%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M +VFDIETTG D+IIEI ++ + ++ F + P L Sbjct: 412 KNMEYVVFDIETTGFSKVRDKIIEISGFKIKNNIVIDQ-FYSLVNPE-IDLPENIYLLTK 469 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I +E LK+ P + +F F +AHNA FDV FI + +++N +I Sbjct: 470 IKNETLKNAPKILQVLPDFLKFIKNTC--LVAHNASFDVSFIFEKSKQLNISFP-LLPVI 526 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 DTL++++ S + + H A D+ +++++K++ Sbjct: 527 DTLALSQYYFSSFMKFFSLKRLAAKFKVKLEEHHRAKDDAKATTEIFMKILN 578 >gi|59713199|ref|YP_205974.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) [Vibrio fischeri ES114] gi|59481447|gb|AAW87086.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) [Vibrio fischeri ES114] Length = 212 Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 5/97 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L + +R FQ + P G + SP GI++ Sbjct: 16 VVLDFETTGLSPNQGDRAIEIGAVKLENGVVVDR-FQGLMNP-GFRVSPFIENYTGISNR 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 L D S + +EF +F N +AHNA FD F Sbjct: 74 MLADAASCDEVMNEFANFIQGCN--LVAHNASFDKRF 108 >gi|266619696|ref|ZP_06112631.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] gi|288868749|gb|EFD01048.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] Length = 264 Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 5/167 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTG+ + D IIEI A+++ ++ + TF + P R A K++GITD Sbjct: 57 NYVVFDLETTGISAVKDDIIEISALKVKNHEQV-ETFSRLVNP-RRPIPAGATKVNGITD 114 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ +P I EF DF + I HN + + IDTL Sbjct: 115 EMVQSEPGLEFILPEFLDFIDG--EILIGHNIQSFDLLFLNRAADEVCRKAVLNDFIDTL 172 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR P + Y IS H A D + Y M Sbjct: 173 FMARALLPGLSRHRLTDLADY-FKISSEGAHRAFNDCVMNQICYEHM 218 >gi|309776025|ref|ZP_07671017.1| DNA polymerase III, alpha subunit, Gram-positive type [Erysipelotrichaceae bacterium 3_1_53] gi|308916307|gb|EFP62055.1| DNA polymerase III, alpha subunit, Gram-positive type [Erysipelotrichaceae bacterium 3_1_53] Length = 1271 Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 5/228 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL S+ D IIE G + D + ++ Q+F+ P S +L GIT+E Sbjct: 221 YCVFDLETTGLSSRFDHIIEFGGQIVKDRACI-KSLQMFIKPPVA-LSAFTTELTGITEE 278 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ SF+ E DF + + +AHNA FD F+N EL RI + P+ I Sbjct: 279 HMKNAKSFADSIDEILDFIGD--SILVAHNATFDYNFLNDELARIGRKPIMNPVIDTLDL 336 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187 + L + + YGI H A D+ +L+ Y+ M+ I N Sbjct: 337 ARSMQADRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLAQTYMNMLNDLKHIKNLQELQ 396 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + K V ++++L ++ + + H K + K+ Sbjct: 397 DMQTAESFRKVRVKHVTVLAKNMAGLKELFELVTLSHTKYLAYSSKST 444 >gi|330723726|gb|AEC46096.1| DNA polymerase III PolC [Mycoplasma hyorhinis MCLD] Length = 1457 Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 76/206 (36%), Gaps = 3/206 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFD+ETTGL K + +IE GAV + + + + P + P + Sbjct: 403 RYVVFDLETTGLSPKFNELIEFGAVVWQNGQTLEKH-EFLIKPKEKI--PSYISDLTGIT 459 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + S + QN+ +AHNA+FD G + + + L+ I Sbjct: 460 NQMIENEAISVEEAAIKIKQIFQNSILVAHNARFDYGCLVEFFKELELYELEQPVIDTLE 519 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 R++L L K I H D+ +L+ V+ + ++ + N Sbjct: 520 VSRFLAPTQKRHNLKELAKNASIHYDETESHRGGYDAEVLAKVWDQFLIKLIEKNIKDLN 579 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF 213 + ++ K + + Sbjct: 580 SLNQVGSNILDFKRRGLFSKEIRVIV 605 >gi|257867744|ref|ZP_05647397.1| DNA polymerase III [Enterococcus casseliflavus EC30] gi|257874072|ref|ZP_05653725.1| DNA polymerase III [Enterococcus casseliflavus EC10] gi|257801827|gb|EEV30730.1| DNA polymerase III [Enterococcus casseliflavus EC30] gi|257808236|gb|EEV37058.1| DNA polymerase III [Enterococcus casseliflavus EC10] Length = 918 Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 6/174 (3%) Query: 7 MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+ I V D+ETTG DS DRII+ G V + D NR F + P+ R+ S + +L Sbjct: 1 MKPIYAVVDLETTGTDSTIDRIIQFGCVLVQDGKIINR-FAADINPD-RRISKQIQRLTH 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT++ + P F I ++ N ++AHN FD F++ E R PL I Sbjct: 59 ITNQQVSKAPYFEDIADTIYNLL--SNTIFVAHNIYFDYHFLSNEFVRCGLPPLSIPGID 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 S L L G + + + + +YI+ ++ Sbjct: 117 TVELAQVFLPTESSFRLGDLADSIGFRHDNPHQADSDAEVTAALFLYIEAIMRQ 170 >gi|76788222|ref|YP_329936.1| DNA polymerase III epsilon subunit family exonuclease [Streptococcus agalactiae A909] gi|77412263|ref|ZP_00788580.1| Unknown [Streptococcus agalactiae CJB111] gi|77414710|ref|ZP_00790841.1| Unknown [Streptococcus agalactiae 515] gi|76563279|gb|ABA45863.1| exonuclease, DNA polymerase III, epsilon subunit family [Streptococcus agalactiae A909] gi|77159237|gb|EAO70417.1| Unknown [Streptococcus agalactiae 515] gi|77161697|gb|EAO72691.1| Unknown [Streptococcus agalactiae CJB111] Length = 604 Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 6/212 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R I FDIETTGL+S+ DRI+E+GAV + +++ + S + + Sbjct: 46 INFIKNRFIAFDIETTGLNSQQDRIVEVGAVLFENGKVV-DSYESLVN-AKVNISADVTR 103 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAE-LQRINKDP 117 ++ IT+ +K+ PS + ++ E +F + AHNAKFD+GF+ + Sbjct: 104 INNITNRMIKNAPSENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLGYNGE 163 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + + + + + + SHR+K A++ ++L+ ++ + Sbjct: 164 IKYLDTLSLSRKNVKGLRNYKQNTVAEYFNLQNKNSHRAKSDAIICGNILTKLFFIIENQ 223 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209 S+ +F K N+ + E V + +R Sbjct: 224 KSRKSFSSKNNKISPEELEVCAVIQNIIFERK 255 >gi|291295885|ref|YP_003507283.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279] gi|290470844|gb|ADD28263.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279] Length = 267 Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 7/165 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTGL + IIE+ + L + +T F+ + P G P +L GI + Sbjct: 90 VVLDIETTGLSPTDHEIIELALIRLENGRRT--VFERLVNP-GVLIPPFISRLTGIRSQD 146 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D ++ E W NA I NA FD+GF+ +R+ + ++DT+ Sbjct: 147 VRDAADIYTVLEEAWPLL--DNATLIIQNASFDLGFLQPRFKRLGYR--LDNPVVDTIHW 202 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 AR+ P ++H A+ D V +M Sbjct: 203 ARKALPGLTKRGLDSLAWAFDLGPIPARHRAMGDVETTLQVAHEM 247 >gi|224283886|ref|ZP_03647208.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum NCIMB 41171] gi|311064734|ref|YP_003971459.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum PRL2010] gi|313141038|ref|ZP_07803231.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB 41171] gi|310867053|gb|ADP36422.1| DnaQ DNA polymerase III alpha subunit [Bifidobacterium bifidum PRL2010] gi|313133548|gb|EFR51165.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB 41171] Length = 180 Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 5/172 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG+ D IIE GAV+++D T+Q + P R +P +L GIT + Sbjct: 11 YVVLDLETTGVSWYRDTIIEFGAVKVVDRKPV-DTYQQLVNP-MRNLNPFITQLTGITPD 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P+ ++ +F + + HN + P+RIIDTL Sbjct: 69 MLEPAPTLDTVLPDFLRWCGDDAMI--GHNIMQFDIKFIDLAAQRILHHAVPNRIIDTLQ 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++R +P + I+ +H AL D+ + M + Sbjct: 127 MSRSMYPQYNRHRL-VDLIQRFDIADVEEHRALSDAEQTQMCFEYMRDEQRR 177 >gi|167750041|ref|ZP_02422168.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702] gi|167657062|gb|EDS01192.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702] Length = 1605 Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 44/98 (44%), Positives = 54/98 (55%), Gaps = 4/98 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFDIETTGL N+RI EIGAV+L + R F F+ P +L GITD+ Sbjct: 592 IVFDIETTGLHPANERITEIGAVKLRNMEIVER-FSTFVNP-MMPIPSNITELTGITDDM 649 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 + D P+ S+F F N+ AHNAKFDV FI Sbjct: 650 VADAPTEDVAVSDFMAFC--GNSPVCAHNAKFDVSFIR 685 >gi|317128618|ref|YP_004094900.1| DnaQ family exonuclease/DinG family helicase [Bacillus cellulosilyticus DSM 2522] gi|315473566|gb|ADU30169.1| DnaQ family exonuclease/DinG family helicase [Bacillus cellulosilyticus DSM 2522] Length = 922 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 11/205 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++ D+ETTG+ K DRII+I V + +R F ++ P R P L I Sbjct: 3 RFVIVDVETTGVSFIKGDRIIQIAFVVIEGKKIIDR-FNSYVNP-MRDIPPFIRSLTNIN 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D +KD P+F + + AHN FD+ FIN EL + L +IDT Sbjct: 61 DNEVKDAPTFDLVAPRLLQALDGAFFV--AHNVDFDLSFINEELHALGYTGL-SGPVIDT 117 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG----SQIN 182 + +++ +P++ S + ++H H A D+ + +++++M Q Sbjct: 118 VELSKIAYPTADGFRLSQLSES-LHMNHDQPHRADSDAEATALIFLEIMDKLYHLPKQTL 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLK 207 + + + + K Sbjct: 177 IELNNLSTKLKSDIGSIIQEWIMEK 201 >gi|317497265|ref|ZP_07955589.1| exonuclease [Lachnospiraceae bacterium 5_1_63FAA] gi|316895510|gb|EFV17668.1| exonuclease [Lachnospiraceae bacterium 5_1_63FAA] Length = 235 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 68/211 (32%), Gaps = 8/211 (3%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+ + FD+ETTGL +D+IIEIGAV++ D + + + + P + ++ Sbjct: 1 MKDYVAFDLETTGLSPDSDQIIEIGAVKIRDGKISGK-YNCIIHPEIEVSD---FIINLT 56 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + + HN FD F+ Sbjct: 57 GISRDMLRKGIPLKEGVEEFLEFSGDLPVLGHNVMFDYKFMKMAAASFKYPFEKTGVDTL 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++ ++ +++ H A D+ + V+ +M F Sbjct: 117 KVARKLLTGLENKKLET---LCAHYHYVNQAAHRAYDDALATAVVFEQMKKEFPTEEEIF 173 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + + +F ++++ + + Sbjct: 174 QPQQLQFKVKKERPATPKQKKYLENLMKYHA 204 >gi|310287853|ref|YP_003939111.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum S17] gi|309251789|gb|ADO53537.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum S17] Length = 180 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 5/172 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG+ D IIE GAV+++D T+Q + P R +P +L GIT + Sbjct: 11 YVVLDLETTGVSWYRDTIIEFGAVKVVDRKPV-DTYQQLVNP-MRNLNPFITQLTGITPD 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P+ ++ +F + + HN + P+RIIDTL Sbjct: 69 MLEPAPTLDTVLPDFLRWCGDDAMI--GHNIMRFDIKFIDLAAQRILHHAVPNRIIDTLQ 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++R +P + I+ +H AL D+ + M + Sbjct: 127 MSRSMYPQYNRHRL-VDLIQRFDIADVEEHRALSDAEQTQMCFEYMRDEQRR 177 >gi|239831040|ref|ZP_04679369.1| exonuclease [Ochrobactrum intermedium LMG 3301] gi|239823307|gb|EEQ94875.1| exonuclease [Ochrobactrum intermedium LMG 3301] Length = 214 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 49/215 (22%), Positives = 83/215 (38%), Gaps = 21/215 (9%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + K R IV D ETTGL DRI+ IGAV++ +++ + P + + P+A Sbjct: 9 VHTRKKRVIVVDTETTGLLP-YDRIVTIGAVKIEGDDFLHQSLHLIFDP-RKDSHPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + FS + + + + E +AHNA FD+ ++ E ++ D L Sbjct: 67 VHGYDNWMTRYQDLFSDLAAPIRKW-FDWADEIVAHNADFDMRYVQREFRKAEVDMLPHP 125 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 S + C +HGAL D++L + +Y+ + Sbjct: 126 VFCTMERSREIWSGQSAKLDD--CLARIGLSRIGKRHGALEDAYLTAGLYLHQRGIKKSL 183 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 V + S K KP R Sbjct: 184 P----------------KVNSWSPPKNLKPYPPRP 202 >gi|225850145|ref|YP_002730379.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1] gi|225645024|gb|ACO03210.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1] Length = 205 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 5/196 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + +++ IIEI A++ +R + + P KL GIT + Sbjct: 13 IIDIETTGFNPESNDIIEIAAIKYQGNIILDRFW-SLIKPEIELIPEHISKLTGITTAMV 71 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D+P+ + +F +F +N + HN +FD+ F+N + + I + I Sbjct: 72 IDQPTVDKVLPDFLNFI--ENTILVGHNIRFDLAFLNKKAKEILNKTIKNPFICTDHLAR 129 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 + L S+ + + I +H A+ D+ + +++IKM+ N + Sbjct: 130 KILSDIDSKSLASIAQHFNIPF--SRQHRAMYDAEVNLEIFIKMLRFLEDYNVFKVMDII 187 Query: 191 RFFKEEKKTVPNISLL 206 + + +K Sbjct: 188 KLSEGKKVNYREKRRR 203 >gi|312143668|ref|YP_003995114.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus'] gi|311904319|gb|ADQ14760.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus'] Length = 1401 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 7/197 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL+ IIEIGAV++ K F+ F+ + + ++ GI Sbjct: 388 FVVFDLETTGLNPSQHDIIEIGAVKIKAGEKIAE-FETFID-IDKNVPAKITEITGINTS 445 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + F DF + +AHNA FD GF+ LQ++ + + + + Sbjct: 446 MLTGAPKLKAAIERFIDFIGD--GVLVAHNADFDYGFLRTALQKLEINRKEYTVLDTLAL 503 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGFKT 187 S LN+L + + ++ H AL D+ +++ K++ + N K Sbjct: 504 SRALIKDSKNYKLNTLAEYF--SVELDDHHRALADADATAEILKKLLAIIEKDDNSNLKD 561 Query: 188 NEDRFFKEEKKTVPNIS 204 D K + K + Sbjct: 562 INDYISKIDWKDLRPFH 578 >gi|256956660|ref|ZP_05560831.1| DNA polymerase III [Enterococcus faecalis DS5] gi|256947156|gb|EEU63788.1| DNA polymerase III [Enterococcus faecalis DS5] Length = 1439 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 414 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 469 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 470 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 529 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 530 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 587 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 588 DLNRHIGEGDSYKRARPF 605 >gi|256763072|ref|ZP_05503652.1| DNA polymerase III [Enterococcus faecalis T3] gi|256963554|ref|ZP_05567725.1| DNA polymerase III [Enterococcus faecalis HIP11704] gi|256684323|gb|EEU24018.1| DNA polymerase III [Enterococcus faecalis T3] gi|256954050|gb|EEU70682.1| DNA polymerase III [Enterococcus faecalis HIP11704] Length = 1439 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 414 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 469 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 470 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 529 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 530 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 587 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 588 DLNRHIGEGDSYKRARPF 605 >gi|91775906|ref|YP_545662.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus KT] gi|91709893|gb|ABE49821.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus KT] Length = 462 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 5/158 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG DRI EIG + + + R +Q + P SP + GI++ Sbjct: 5 YVLLDLETTGATPVTDRITEIGLIRYENGIEVKR-WQTLVNPEMH-ISPFITSITGISNA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P F + +E + A AHN +FD GF+ E +R++ L + + Sbjct: 63 MVKDAPLFKDVANELLSHLHG--AVLCAHNVRFDYGFLKNEFRRLDIT-LRQNVLCTVKL 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 R + L+++ R+GI + R + ++ Sbjct: 120 SRRLYPEYKSHGLDAIIARHGIACAARHRAMGDVEVMA 157 >gi|332995649|gb|AEF05704.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2] Length = 710 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 6/174 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG ++ +RI EIG V+++ T+Q + P R+ +L GI+D+ Sbjct: 543 YVVVDIETTGGNNSYNRITEIGMVKIVAGEVV-DTYQTLINPQ-RRIPATITRLTGISDD 600 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P F + A ++AHN FD GFI + + + T+ Sbjct: 601 MVADAPLFVEVAERIAS--FTDEAVFVAHNVNFDYGFIK--QEFARLELPFKRPKLCTVR 656 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R+ +P + + R+ + + + I + + I Sbjct: 657 EMRKVNPGLPSYSLANLTRHFDIKMEQHHRALSDAKAAAALLDIILTMSAETIK 710 >gi|167767436|ref|ZP_02439489.1| hypothetical protein CLOSS21_01955 [Clostridium sp. SS2/1] gi|167710728|gb|EDS21307.1| hypothetical protein CLOSS21_01955 [Clostridium sp. SS2/1] gi|291558729|emb|CBL37529.1| exonuclease, DNA polymerase III, epsilon subunit family [butyrate-producing bacterium SSC/2] Length = 235 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 66/195 (33%), Gaps = 8/195 (4%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+ + FD+ETTGL +D+IIEIGAV++ D + + + + P + ++ Sbjct: 1 MKDYVAFDLETTGLSPDSDQIIEIGAVKIRDGKISGK-YNCIIHPEIEVSD---FIINLT 56 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + + HN FD F+ Sbjct: 57 GISRDMLRKGIPLKEGVEEFLEFSGDLPILGHNVMFDYKFMKMAAASFKYPFEKTGVDTL 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++ ++ +++ H A D+ + V+ +M F Sbjct: 117 KVARKLLTGLENKKLET---LCAHYHYVNQAAHRAYDDALATAVVFEQMKKEFPTEEEIF 173 Query: 186 KTNEDRFFKEEKKTV 200 + + +F ++++ Sbjct: 174 QPQQLQFKVKKERPA 188 >gi|213691637|ref|YP_002322223.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523098|gb|ACJ51845.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 211 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 74/212 (34%), Gaps = 15/212 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + I EIGAV + ++ FQ + P R + L GITD Sbjct: 10 YVALDLETTGFYPNSCAITEIGAVRVRKGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + D + F + + HN FD+ F++ + I + Sbjct: 68 MVADLDPIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADY 127 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L R+GI +H AL D+ + M ++ Sbjct: 128 DTMQISRALFPAQRHHRLADLIVRFGIA--DNEEHRALSDAIQTQQCFEWM------RHY 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 + +E + ++ N + + + + R Sbjct: 180 VTEHHESEAIRWKQAPARNSTEILHQQLVVKR 211 >gi|265989936|ref|ZP_06102493.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1] gi|263000605|gb|EEZ13295.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1] Length = 233 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 18 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 75 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + + E +AHNA+FD+ +I E ++ D LD Sbjct: 76 VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 134 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + C +HGAL D++L + +Y+ + Sbjct: 135 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQDVAKPL 192 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K + + K ++ Sbjct: 193 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 229 >gi|46190621|ref|ZP_00121275.2| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Bifidobacterium longum DJO10A] Length = 211 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 15/212 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + I EIGAV + + ++ FQ + P R + L GITD Sbjct: 10 YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + D + F + + HN FD+ F++ + I + Sbjct: 68 MVADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADY 127 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L R+GI +H AL D+ + M ++ Sbjct: 128 DTMQISRALFPAQRHHRLADLIVRFGIA--DNEEHRALSDAIQTQQCFEWM------RHY 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 + +E + ++ N + + + + R Sbjct: 180 VTEHHESEAIRWKQAPAKNSAEILHQQLVVKR 211 >gi|78044072|ref|YP_360592.1| DNA polymerase III subunit alpha [Carboxydothermus hydrogenoformans Z-2901] gi|77996187|gb|ABB15086.1| DNA polymerase III, alpha subunit, Gram-positive type [Carboxydothermus hydrogenoformans Z-2901] Length = 1407 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 6/174 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD ET+GL S+ D IIEIGAV++ D + TF V + P ++ + D Sbjct: 395 VAFDFETSGLSSQRDEIIEIGAVKIFDG-EIKETFSVLIRPQKPISAKISELTGITNDLL 453 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 K+ F +F F + + +AHNA FD GF+ L+R+ + + Sbjct: 454 EKEGLDFGEAIEKFLRFCDG--SILLAHNAAFDYGFLRQALKRLGHE---RKFSVVDNLA 508 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 R + + +S + H AL DS+ L++V++K++ + Sbjct: 509 LVRILFPELKNHKLKTITEHLEVSLNNHHRALADSYALAEVFLKLLPRLFERGL 562 >gi|307243879|ref|ZP_07526004.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678] gi|306492701|gb|EFM64729.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678] Length = 172 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 7/166 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTGL D IIEIG E+ R + + PNG S + D Sbjct: 8 YVVVDLETTGLSPFNGDEIIEIGVTEIKGDR-IYRNYSRLVKPNGFIPSVITEITNITND 66 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 P + F F ++ AHNAKFD+GF+N L+++N DP+D + Sbjct: 67 MVQDALP-LEDVLPNFRKFIGDRTII--AHNAKFDIGFLNYYLEKMNLDPIDKYICTMEM 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +++ L + C YGI + + H A D+ + +++K Sbjct: 124 LKKNKEYKGKNKKLQTACDYYGIL--NENAHRADSDTLATAKLFMK 167 >gi|307271493|ref|ZP_07552765.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855] gi|306511765|gb|EFM80763.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855] Length = 1451 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 600 DLNRHIGEGDSYKRARPF 617 >gi|255972152|ref|ZP_05422738.1| DNA polymerase III [Enterococcus faecalis T1] gi|257079586|ref|ZP_05573947.1| DNA polymerase III [Enterococcus faecalis JH1] gi|257082034|ref|ZP_05576395.1| DNA polymerase III [Enterococcus faecalis E1Sol] gi|257084659|ref|ZP_05579020.1| DNA polymerase III [Enterococcus faecalis Fly1] gi|257416589|ref|ZP_05593583.1| DNA polymerase III [Enterococcus faecalis AR01/DG] gi|255963170|gb|EET95646.1| DNA polymerase III [Enterococcus faecalis T1] gi|256987616|gb|EEU74918.1| DNA polymerase III [Enterococcus faecalis JH1] gi|256990064|gb|EEU77366.1| DNA polymerase III [Enterococcus faecalis E1Sol] gi|256992689|gb|EEU79991.1| DNA polymerase III [Enterococcus faecalis Fly1] gi|257158417|gb|EEU88377.1| DNA polymerase III [Enterococcus faecalis ARO1/DG] Length = 1439 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 414 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 469 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 470 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 529 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 530 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 587 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 588 DLNRHIGEGDSYKRARPF 605 >gi|229545206|ref|ZP_04433931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322] gi|300860665|ref|ZP_07106752.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis TUSoD Ef11] gi|229309751|gb|EEN75738.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322] gi|300849704|gb|EFK77454.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis TUSoD Ef11] gi|315035641|gb|EFT47573.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0027] Length = 1451 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 600 DLNRHIGEGDSYKRARPF 617 >gi|257087409|ref|ZP_05581770.1| DNA polymerase III [Enterococcus faecalis D6] gi|256995439|gb|EEU82741.1| DNA polymerase III [Enterococcus faecalis D6] Length = 1439 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 414 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 469 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 470 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 529 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 530 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 587 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 588 DLNRHIGEGDSYKRARPF 605 >gi|256961318|ref|ZP_05565489.1| DNA polymerase III [Enterococcus faecalis Merz96] gi|256951814|gb|EEU68446.1| DNA polymerase III [Enterococcus faecalis Merz96] Length = 1439 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 414 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 469 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 470 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 529 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 530 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 587 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 588 DLNRHIGEGDSYKRARPF 605 >gi|255975216|ref|ZP_05425802.1| DNA polymerase III [Enterococcus faecalis T2] gi|255968088|gb|EET98710.1| DNA polymerase III [Enterococcus faecalis T2] Length = 1439 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 414 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 469 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 470 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 529 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 530 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 587 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 588 DLNRHIGEGDSYKRARPF 605 >gi|257068588|ref|YP_003154843.1| hypothetical protein Bfae_14220 [Brachybacterium faecium DSM 4810] gi|256559406|gb|ACU85253.1| exonuclease, DNA polymerase III, epsilon subunit family [Brachybacterium faecium DSM 4810] Length = 551 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 72/205 (35%), Gaps = 4/205 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG D D I EIGAV++ F+ F+ P R L GITD Sbjct: 22 VVVDLETTGTDPAADAITEIGAVKVRGGEVLGE-FRTFVDPE-RPIPAYIASLTGITDAA 79 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + PS ++ F D +A +AHNA+FD+GF++A+ P + Sbjct: 80 VAEAPSIRTVLPMFLD--FAGDAALVAHNARFDIGFLSAQAAACEITWPRPRVLDTLALA 137 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 D + H AL D+ DV ++ + Sbjct: 138 RTVFRRDEVRDHRLSTLARHVGAGITPDHRALSDARATVDVLHAIIERLGPSGASTLEDL 197 Query: 190 DRFFKEEKKTVPNISLLKRDKPLFT 214 + L D P Sbjct: 198 GTAHRRASPVQLRKKHLAEDVPPVP 222 >gi|187927567|ref|YP_001898054.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12J] gi|187724457|gb|ACD25622.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii 12J] Length = 216 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62 + D ETTGLD + D II IGAV ++ + T++ ++ + P G Sbjct: 38 WVALDCETTGLDVRTDEIISIGAVRIVGNRILTSQRLELLIRPQGEMRPESICVH 92 >gi|110004377|emb|CAK98715.1| probable dna polymerase III alpha subunit protein [Spiroplasma citri] Length = 1453 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 7/224 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++FD+ETTGL S D IIE GAV + S + P+ + S +L GITD Sbjct: 409 KYVIFDLETTGLSSGYDEIIEFGAVIMDGISGERQIINHLFKPSVK-LSSFTTELTGITD 467 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L DKP+F + ++F + A IAHNA+FD+GFI + L++ + ++ + I Sbjct: 468 ELLADKPTFIESIDQILEYFKD--AILIAHNAEFDLGFIQSWLKKAGRSEINNTVIDTLQ 525 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG-SQINFGFK 186 + L ++ + Y + + H D+ +L+D+Y + + F Sbjct: 526 LSRILEPHLKNYRLGTIARCYSVIYNEEVAHRGDYDAIVLTDIYEHQLRKMINNYGIEFD 585 Query: 187 TNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 + + +K ++++L +++ + K H K Sbjct: 586 NDIENIHDPAVYKKLRPKHMAILAKNQAGLLELFKLITSAHTKY 629 >gi|293383603|ref|ZP_06629513.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712] gi|293387284|ref|ZP_06631841.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613] gi|312906153|ref|ZP_07765165.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512] gi|312909498|ref|ZP_07768353.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis DAPTO 516] gi|291079115|gb|EFE16479.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712] gi|291083321|gb|EFE20284.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613] gi|310627799|gb|EFQ11082.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512] gi|311290171|gb|EFQ68727.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis DAPTO 516] Length = 1451 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 600 DLNRHIGEGDSYKRARPF 617 >gi|257419836|ref|ZP_05596830.1| DNA polymerase III [Enterococcus faecalis T11] gi|257161664|gb|EEU91624.1| DNA polymerase III [Enterococcus faecalis T11] Length = 1439 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 414 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 469 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 470 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 529 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 530 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 587 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 588 DLNRHIGEGDSYKRARPF 605 >gi|257090543|ref|ZP_05584904.1| DNA polymerase III polC [Enterococcus faecalis CH188] gi|256999355|gb|EEU85875.1| DNA polymerase III polC [Enterococcus faecalis CH188] Length = 1439 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 414 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 469 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 470 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 529 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 530 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 587 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 588 DLNRHIGEGDSYKRARPF 605 >gi|229549448|ref|ZP_04438173.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200] gi|256853720|ref|ZP_05559085.1| DNA polymerase III PolC [Enterococcus faecalis T8] gi|257421977|ref|ZP_05598967.1| DNA polymerase III polC [Enterococcus faecalis X98] gi|294779462|ref|ZP_06744860.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis PC1.1] gi|307270863|ref|ZP_07552150.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248] gi|307277206|ref|ZP_07558310.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134] gi|307291051|ref|ZP_07570937.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411] gi|312953417|ref|ZP_07772257.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102] gi|229305685|gb|EEN71681.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200] gi|256710663|gb|EEU25706.1| DNA polymerase III PolC [Enterococcus faecalis T8] gi|257163801|gb|EEU93761.1| DNA polymerase III polC [Enterococcus faecalis X98] gi|294453468|gb|EFG21872.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis PC1.1] gi|306497900|gb|EFM67431.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411] gi|306506136|gb|EFM75302.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134] gi|306512776|gb|EFM81421.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248] gi|310628626|gb|EFQ11909.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102] gi|315030983|gb|EFT42915.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4000] gi|315146013|gb|EFT90029.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2141] gi|315146659|gb|EFT90675.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4244] gi|315152085|gb|EFT96101.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0031] gi|315155311|gb|EFT99327.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0043] gi|315159111|gb|EFU03128.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0312] gi|315161731|gb|EFU05748.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0645] gi|315166431|gb|EFU10448.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1341] gi|315173645|gb|EFU17662.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1346] gi|323481337|gb|ADX80776.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis 62] gi|327535664|gb|AEA94498.1| DNA polymerase III PolC [Enterococcus faecalis OG1RF] gi|329569948|gb|EGG51703.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467] Length = 1451 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 600 DLNRHIGEGDSYKRARPF 617 >gi|315025440|gb|EFT37372.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2137] Length = 1451 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 600 DLNRHIGEGDSYKRARPF 617 >gi|307285835|ref|ZP_07565969.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860] gi|306502596|gb|EFM71863.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860] Length = 1451 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 600 DLNRHIGEGDSYKRARPF 617 >gi|307287733|ref|ZP_07567776.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109] gi|306501471|gb|EFM70774.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109] gi|315032873|gb|EFT44805.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0017] Length = 1451 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 600 DLNRHIGEGDSYKRARPF 617 >gi|261416331|ref|YP_003250014.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372787|gb|ACX75532.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325547|gb|ADL24748.1| exonuclease, DNA polymerase III, epsilon subunit family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 215 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 15/183 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNR---TFQVFLCPNGRKNSPEAL 60 + + FD+ETTGL ++ D IIEIGA VE+ + + F + PN EA Sbjct: 7 KFVAFDLETTGLVNRKDEIIEIGAVKFTVEVKNGRVVPKLISEFDTLVKPN-MLIPAEAT 65 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++ ITD+ +++ P +F F + +AHNA FD F+ ++ + Sbjct: 66 NVNHITDKMVENAPPVGEALKQFTAF-CGPGSILLAHNANFDASFLRTAYEQNPQFTPGN 124 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYG------ITISHRSKHGALLDSHLLSDVYIKM 174 + + + L + + +TI H ++ D +L +V++ + Sbjct: 125 PVVDSLAISKTIMPELANHKLGFMANMFMKRGEISMTIDEEKMHRSVYDCEMLMEVFVAL 184 Query: 175 MVG 177 + Sbjct: 185 LRR 187 >gi|169830753|ref|YP_001716735.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis audaxviator MP104C] gi|169637597|gb|ACA59103.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis audaxviator MP104C] Length = 921 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 4/101 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGLD + D I+E+G V + D F + P R L G+ D Sbjct: 5 FVVLDLETTGLDPQADEIVEVGLVRVEDGKP-GAVFHALVRP-SRPLPARIKSLTGLDDA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 L ++P +S + F N + H+ FD+ F+ Sbjct: 63 DLAERPDWSEVRPAVTAFL--GNEPVVGHHVHFDLAFLERH 101 >gi|21314372|gb|AAM46912.1|AF508325_1 DNA polymerase III C [Enterococcus faecalis] Length = 1439 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 414 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 469 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 470 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 529 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 530 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 587 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 588 DLNRHIGEGDSYKRARPF 605 >gi|315150171|gb|EFT94187.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0012] Length = 1451 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 600 DLNRHIGEGDSYKRARPF 617 >gi|315170319|gb|EFU14336.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1342] Length = 1451 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 600 DLNRHIGEGDSYKRARPF 617 >gi|315164832|gb|EFU08849.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1302] Length = 1451 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 600 DLNRHIGEGDSYKRARPF 617 >gi|312903703|ref|ZP_07762877.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635] gi|310632895|gb|EFQ16178.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635] gi|315578694|gb|EFU90885.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0630] Length = 1451 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 600 DLNRHIGEGDSYKRARPF 617 >gi|29376875|ref|NP_816029.1| DNA polymerase III PolC [Enterococcus faecalis V583] gi|227519898|ref|ZP_03949947.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] gi|227553915|ref|ZP_03983962.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22] gi|29344340|gb|AAO82099.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis V583] gi|227072692|gb|EEI10655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] gi|227176901|gb|EEI57873.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22] gi|315574385|gb|EFU86576.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309B] gi|315580141|gb|EFU92332.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309A] Length = 1451 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 600 DLNRHIGEGDSYKRARPF 617 >gi|312899805|ref|ZP_07759124.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470] gi|311293055|gb|EFQ71611.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470] Length = 1451 Score = 70.7 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N + I Sbjct: 482 DEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K++G+ H A+ DS +I + + F Sbjct: 542 SRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHD 599 Query: 188 NEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 600 DLNRHIGEGDSYKRARPF 617 >gi|229918731|ref|YP_002887377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Exiguobacterium sp. AT1b] gi|229470160|gb|ACQ71932.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium sp. AT1b] Length = 936 Score = 70.7 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 7/176 (3%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++ D+ETTG K D +IE AV + + R + + P R P +L I+D Sbjct: 4 YVIVDLETTGHSVKSGDELIEFAAVVVQEGEVIER-YSTLIRP-SRPIPPFITQLTTISD 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + D P+F + + W + ++AHN FD+ F+N L++ I Sbjct: 62 EDVSDAPTFEDVIPDIWKMLDG--RVFVAHNVAFDLTFLNESLEQAGYLAFQGRAIDTVE 119 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L +L + + H AL D+ ++++I+M+ + Sbjct: 120 LARILYPTLESHALEALSDTFDLVH--TDAHRALSDAEATAELFIRMLDRLRDLPM 173 >gi|189501071|ref|YP_001960541.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1] gi|189496512|gb|ACE05060.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1] Length = 180 Score = 70.7 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 5/167 (2%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D+ETTGL + DR+IE+ AV +++ F + K+HGIT Sbjct: 12 RVVAVDVETTGLSPLRGDRVIEVAAVAIVNG-VIEEHFCCLIN-VNAPIPTVVQKIHGIT 69 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E L + +++ EF +F IAHNA FD+ FI ELQ + L+ S+ Sbjct: 70 PELLAGEKPPEAVWPEFLNFIGS--NILIAHNAPFDISFIRNELQLLGLSLLNGSQCTLA 127 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 S + S N G H A D+ L + ++ Sbjct: 128 FSRKKFPQLKSHKLDNVARHVLGGMPKGIKLHRASGDALLTAMIWQA 174 >gi|291278558|ref|YP_003495393.1| hypothetical protein DEFDS_0125 [Deferribacter desulfuricans SSM1] gi|290753260|dbj|BAI79637.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 207 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 7/179 (3%) Query: 3 RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEA 59 + N++ VFDIE+TG++ DRI+EIGAV++ + F V + P G ++ Sbjct: 12 KINEVEYCVFDIESTGINPFDGDRIVEIGAVKIKPGFVIDYKNKFHVLVNP-GIPIPEDS 70 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGITDE + + P + F + + +AHNA+ D+ F+ + D Sbjct: 71 QKIHGITDEDVANAPDECEAYYNFIE--FAKGCIPVAHNARKDMAFLRRISKEYLIDEPF 128 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS-HRSKHGALLDSHLLSDVYIKMMVG 177 + + S ++L++L ++Y + I + +H AL D+ S ++ MM Sbjct: 129 EFVLDTLALSKKVNVLSRYHNLDALIEKYNVRIKSNYKRHRALYDAEATSVIFKIMMND 187 >gi|167747300|ref|ZP_02419427.1| hypothetical protein ANACAC_02014 [Anaerostipes caccae DSM 14662] gi|167653278|gb|EDR97407.1| hypothetical protein ANACAC_02014 [Anaerostipes caccae DSM 14662] Length = 234 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 8/175 (4%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR + FD+ETTGL + D++IEIGAV++ + + + + P + Sbjct: 1 MREYVAFDLETTGLSVEEDQVIEIGAVKVKNGKIAGK-YNCIIYPEREVSDFIIRLTGIT 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 P + + + HN FD F+ +R Sbjct: 60 RKMLDGGIPMREGVEGFLA---FSEGYPVLGHNLMFDYRFMKTAAKRFRYAFEKEGVDTL 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + + S+ + +++ H A D+ + V+ M + Sbjct: 117 RAARLLLRGLESKKLSS---LCEHYHYVNQAAHRAYDDALATAVVFESMKREFGE 168 >gi|308273149|emb|CBX29752.1| hypothetical protein N47_F14470 [uncultured Desulfobacterium sp.] Length = 182 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 10/183 (5%) Query: 1 MIRKNKM-----RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 + R KM + ++FD+ETTG + + RIIEIG V + + + + F+ + G+ Sbjct: 4 LTRNIKMSSNSDKYVIFDVETTGFNPQHGARIIEIGVVHIENGNIISE-FKSLIN-CGKA 61 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 S +A K++GIT+E L +P+ +F +F F ++ + +AHNA FD+ F+ EL R+ Sbjct: 62 VSKQAQKVNGITNEMLSGEPTPEEVFPDFLKFISK--STLVAHNAVFDISFLRYELSRLG 119 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +S + L + H AL D+ L + ++++M Sbjct: 120 FVLSNDYLCTLNISRKIFPDLENHKLLTVAKHILVNLPKNLHLHRALDDARLTAMIWMEM 179 Query: 175 MVG 177 M Sbjct: 180 MQR 182 >gi|291548851|emb|CBL25113.1| exonuclease, DNA polymerase III, epsilon subunit family [Ruminococcus torques L2-14] Length = 231 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 11/174 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ I FD+ETTGL + IIEIGA+++ + +R F F+ P+ + +P Sbjct: 1 MLKS----YIAFDLETTGLSPQEHEIIEIGALKVREGKVVDR-FMEFVHPD-KPITPMIT 54 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + IT++ + S + +F F + I HN FD F+ + Sbjct: 55 NITHITNDMVAGARSCPEVIHDFLSFCED--DVLIGHNVMFDYSFVK-CSAVREGLTFEK 111 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I + L +LC Y I + + H A D+ + +Y + Sbjct: 112 MGIDTLKIARKVHKDFESKSLGALCDYYHIE--NPAAHRAYYDALATAKLYQTL 163 >gi|317128725|ref|YP_004095007.1| exonuclease RNase T and DNA polymerase III [Bacillus cellulosilyticus DSM 2522] gi|315473673|gb|ADU30276.1| Exonuclease RNase T and DNA polymerase III [Bacillus cellulosilyticus DSM 2522] Length = 242 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 7/176 (3%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTG DRI+ IG +++ + TF + NG S E KL IT+ Sbjct: 58 VVFDLETTGFYPNNGDRILSIGGIKVKGDKVIDSETFYSLINSNG-GVSEEITKLTNITE 116 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L + P + + F+ F + +AH+A + F+ I K + I Sbjct: 117 KDLIEAPPINDVLQNFYTFMSG--CTLVAHHANHERSFMQHMTWSILKSRFEHRIIDTAF 174 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + L+ C YGITI + +H AL D+ + ++ + + + F Sbjct: 175 LTKIVEPNKNLVSLDECCDHYGITI--KKRHHALYDAIATAQLWTESVREIQNLGF 228 >gi|284991755|ref|YP_003410309.1| DNA polymerase III subunit epsilon [Geodermatophilus obscurus DSM 43160] gi|284065000|gb|ADB75938.1| DNA polymerase III, epsilon subunit [Geodermatophilus obscurus DSM 43160] Length = 609 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 8/170 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG K+ I EIGAV++ FQ + P G + P L GIT Sbjct: 39 FVVVDLETTGGSPKDSAITEIGAVKVRGGEVLGE-FQTLVDP-GCEIPPYISVLTGITST 96 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL----DPSRII 124 + P ++ F + + A +AHNA FD+GF+ A + ++ Sbjct: 97 MVAAAPRIGAVLPHFLE--FARGAVLVAHNAPFDLGFLKAACAANGIPWPATASVDTAVL 154 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R + P+ + + R HR+ A +L ++ ++ Sbjct: 155 ARRLLSRDEVPNCKLATLAPYFRTSTEPCHRALADARATVDVLHGLFERL 204 >gi|238062933|ref|ZP_04607642.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149] gi|237884744|gb|EEP73572.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149] Length = 286 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTGL S +DRI+EI V + + + + P GR P + Sbjct: 37 FVVVDVETTGLSSTSDRIVEIALVRIEGGRVVDE-WATLVDP-GRDPDPTFVHHITAEM 93 >gi|325953822|ref|YP_004237482.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922] gi|323436440|gb|ADX66904.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922] Length = 253 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 73/205 (35%), Gaps = 8/205 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG + DRI+EI V+ + K +T++ + P PE +HGI DE Sbjct: 9 FFDLETTGTNIAKDRIVEIAIVKAYTNGEKEIKTWR--VNPE-MPIPPETSLIHGIYDED 65 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P+F I + + + + N L+ L+ R ID I Sbjct: 66 VKDAPTFREIAPQIVELIKDSDLAGFNSNRFDIPLLAEEFLRNGIDFDLEKHRPIDVQVI 125 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + P + ++ + H A D+ +V + + ++ + Sbjct: 126 FHKMEP----RNLAAAYKFYCDKDLENAHSAEADTLATYEVLMAQIEKYEELKNDNQFLS 181 Query: 190 DRFFKEEKKTVPNISLLKRDKPLFT 214 + + L+ Sbjct: 182 EFSSQRRTVDFAGFILMNEQNEEVI 206 >gi|310642523|ref|YP_003947281.1| dnaq family exonuclease/ding family helicase [Paenibacillus polymyxa SC2] gi|309247473|gb|ADO57040.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus polymyxa SC2] Length = 960 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 8/221 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ V D ETTG S +D II++G + + +R + ++ P GR P L GIT Sbjct: 1 MKFAVLDFETTGTQSADD-IIQVGLAIIDHDNSISRVYGSYVNP-GRSIPPFITGLTGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ +KD P+ + E ++ + HN FD F+ + L R P + Sbjct: 59 DDDVKDAPALEEMMMELVPMLDD--VVLVGHNVAFDFNFLQSALDRCGYLPFSGRILDTM 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + S L + +G+ H A D+ ++V++K + + Sbjct: 117 DFLKIMFPSLSSYQLGFVSSEFGLAHDRP--HQADSDALATAEVFLKCLGELQALPLITI 174 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 F EE + R++ I ++L++H Sbjct: 175 QRLSDLFAEEDSDLGWFLDGIREEKELDPI--QDLEKHQFF 213 >gi|325841946|ref|ZP_08167523.1| UvrD/REP helicase [Turicibacter sp. HGF1] gi|325489779|gb|EGC92134.1| UvrD/REP helicase [Turicibacter sp. HGF1] Length = 849 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 14/233 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R ++FD+E+TGLD D +I+I A+EL++ T R+F+ F+ P+ + Sbjct: 494 RIVIFDVESTGLDVTQDEVIQIAAIELVNGEYT-RSFERFIKPSHSVGDSALVHG---FS 549 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++ + + A I HN ++D+ +++++ R+ + DTL Sbjct: 550 DDYLNEHGEEAREVFLQFQAFVEGALLIGHNVQYDLKIVSSQMNRLGLMFENSMGYYDTL 609 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK----MMVGGSQINF 183 I RR +P +N Y + +SH H A+ D DV +K +M Sbjct: 610 DIVRRLYPDLKNHKLDTVSAY-VGVSHEPTHNAMDDILATKDVLVKSMDLLMTHHENRKK 668 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLF-----TRITKEELDEHDKTIQTL 231 K E + ++ + P + E + H ++I L Sbjct: 669 VMKFYEPHLWGAIQRLKEIQDCFETQPPHVAMKGLIDAFECEDEAHKQSIIEL 721 >gi|293375967|ref|ZP_06622227.1| UvrD/REP helicase [Turicibacter sanguinis PC909] gi|292645404|gb|EFF63454.1| UvrD/REP helicase [Turicibacter sanguinis PC909] Length = 849 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 14/233 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R ++FD+E+TGLD D +I+I A+EL++ T R+F+ F+ P+ + Sbjct: 494 RIVIFDVESTGLDVTQDEVIQIAAIELVNGEYT-RSFERFIKPSHSVGDSALVHG---FS 549 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++ + + A I HN ++D+ +++++ R+ + DTL Sbjct: 550 DDYLNEHGEEAREVFLQFQAFVEGALLIGHNVQYDLKIVSSQMNRLGLMFENSMGYYDTL 609 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK----MMVGGSQINF 183 I RR +P +N Y + +SH H A+ D DV +K +M Sbjct: 610 DIVRRLYPDLKNHKLDTVSAY-VGVSHEPTHNAMDDILATKDVLVKSMDLLMTHHENRKK 668 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLF-----TRITKEELDEHDKTIQTL 231 K E + ++ + P + E + H ++I L Sbjct: 669 VMKFYEPHLWGAIQRLKEIQDCFETQPPHVAMKGLIDAFECEDEAHKQSIIEL 721 >gi|222099149|ref|YP_002533717.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM 4359] gi|281411717|ref|YP_003345796.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila RKU-10] gi|221571539|gb|ACM22351.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM 4359] gi|281372820|gb|ADA66382.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila RKU-10] Length = 186 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 9/176 (5%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG D DRIIEI AV + +NR F + P+ R K+HGI++E Sbjct: 10 VVDTETTGTDPFGGDRIIEIAAVPVFKGKIFSNRAFHSLVNPHVR-IPALIQKVHGISNE 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P +++ F D+ + HNA FD+ F++ + PL + I Sbjct: 69 EVEEAPDMGTVYERFRDYVKG--TVLVFHNANFDLTFLDMMAKETRNFPLTNAYIDTLDI 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + L LC++ GI H AL D+ + + V+++++ + Sbjct: 127 SQEVF--GRPHSLKWLCEKLGIRDKIE--HRALSDALVTAKVFVRLVKLLGEHKVD 178 >gi|294811879|ref|ZP_06770522.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|326440385|ref|ZP_08215119.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|294324478|gb|EFG06121.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] Length = 334 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 8/163 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ L + + + P P + +HG+T + Sbjct: 20 YAVVDVETTGL-ARDDRIVSAAVYRLDARGEVEDHWYTLVNPER---DPGPVWIHGLTSD 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F I EF + +AHNA FD I E R + R+ Sbjct: 76 VLAGAPLFQDIADEFSQRLDG--RVLVAHNAMFDWSMIAREYARARRTAPTRQRLCTIAL 133 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + P + L SL +G+ R H AL D+ +L++ + Sbjct: 134 AKELRLPLPNHKLESLAAHFGVV--QRQAHHALDDARVLAEAF 174 >gi|225018549|ref|ZP_03707741.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum DSM 5476] gi|224948681|gb|EEG29890.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum DSM 5476] Length = 319 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 66/172 (38%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG D D IIE+GA+ + + +F P R ++L GI++E Sbjct: 22 YVVIDLETTGYDPHRDEIIELGALRIHEGEVV-ESFSSLTKPQ-RDLDDYIIQLTGISNE 79 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P S +F + DF + + + HN FDV FI + + + + L Sbjct: 80 MLASAPELSDVFPRYLDFIGD--SIVVGHNVHFDVNFIYDTCIKESLKLF--TNDLVDLL 135 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 RK I H +L D + + K + + Sbjct: 136 WLSRKLLPDLTSHKLCRVSSHFNICVEGMHRSLFDCKTTFECFEKCRILAKE 187 >gi|317471044|ref|ZP_07930419.1| exonuclease [Anaerostipes sp. 3_2_56FAA] gi|316901485|gb|EFV23424.1| exonuclease [Anaerostipes sp. 3_2_56FAA] Length = 234 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 8/175 (4%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR + FD+ETTGL + D++IEIGAV++ + + + + P + Sbjct: 1 MREYVAFDLETTGLSVEEDQVIEIGAVKVKNGKIAGK-YNCIIYPEREVSDFIIRLTGIT 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 P + + + HN FD F+ +R Sbjct: 60 RKMLDGGIPMREGVEGFLA---FSEGYPVLGHNLMFDYRFMKTAAKRFRYAFEKEGVDTL 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + + S+ + +++ H A D+ + V+ M + Sbjct: 117 RAARLLLRGLESKKLSS---LCEHYHYVNQAAHRAYDDALATAVVFESMKREFGE 168 >gi|325571052|ref|ZP_08146624.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC 12755] gi|325156137|gb|EGC68323.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC 12755] Length = 918 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 6/169 (3%) Query: 7 MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+ I V D+ETTG DS DRII+ G V + D NR F + P+ R+ S + +L Sbjct: 1 MKPIYAVVDLETTGTDSTIDRIIQFGCVLVQDGKIINR-FAADINPD-RRISKQIQRLTH 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT++ + P F + ++ N ++AHN FD F++ E R PL I Sbjct: 59 ITNQQVSKAPYFEDVADTIYNLL--SNTIFVAHNIYFDYHFLSNEFVRCGLPPLSLPGID 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 S L L G + + + + +YI+ Sbjct: 117 TVELAQVFLPTESSFRLGDLADSIGFRHDNPHQADSDAEVTAALFLYIE 165 >gi|119900237|ref|YP_935450.1| putative DNA-directed polymerase III [Azoarcus sp. BH72] gi|119672650|emb|CAL96564.1| putative DNA-directed polymerase III [Azoarcus sp. BH72] Length = 474 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 7/163 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R ++ D+ETTG DRI EI + + R ++ + P G P + GI D Sbjct: 6 RYVLVDLETTGAHPLRDRITEIAILRIERGQLVQR-WESLINP-GVPIPPTIQGVTGIDD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P F+++ ++ ++AHNA+FD GF+ + ++ P L Sbjct: 64 TMVAGAPDFAAVADTVAALLDD--CVFVAHNARFDYGFLKTAYAALGREFDAPVLCTVKL 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 S A R+ L+++ +R+G+ ++H A+ D+ +L Sbjct: 122 SRA-LYPDHHRHGLDAIIERHGLAC--GARHRAMGDTEVLWQF 161 >gi|15616303|ref|NP_244608.1| hypothetical protein BH3741 [Bacillus halodurans C-125] gi|10176365|dbj|BAB07460.1| BH3741 [Bacillus halodurans C-125] Length = 219 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 5/171 (2%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 VFD ETTG DR+IE+ AV + T+ TFQ ++ P R E +L GI+++ Sbjct: 29 VFDTETTGFAVGAGDRLIEVAAVHVEGLEVTDFTFQTYVNPE-RNIPAEIEELTGISEDK 87 Query: 70 LKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ P+ F+ F +A W+ H A FDV + ELQR P Sbjct: 88 VKNAPASLPAIESFFRFVEQSGSAAWVGHYASFDVTVLKKELQRYQFSLNVPLLFDTLDL 147 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I DL K++G +H AL D+ + ++ +++ Sbjct: 148 IGYISPSKDMRDLEVYAKQFGT--YIYERHQALGDALTTAHLFCELLRHLE 196 >gi|193215454|ref|YP_001996653.1| DNA polymerase III subunit epsilon [Chloroherpeton thalassium ATCC 35110] gi|193088931|gb|ACF14206.1| DNA polymerase III, epsilon subunit [Chloroherpeton thalassium ATCC 35110] Length = 229 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN 51 R +VFD ETTGLD K D+II IGAV + D+ + +F+ + Sbjct: 43 RFVVFDTETTGLDVKKDKIISIGAVAISDFAIQVADSFETLIRQE 87 >gi|332983437|ref|YP_004464878.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1 BON] gi|332701115|gb|AEE98056.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1 BON] Length = 296 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 6/174 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL+ D+I+EI AV+ ++ + P G A K++ ITDE Sbjct: 122 FVAIDLETTGLNPAIDKIVEIAAVKFKYGEII-DSYTTLINP-GIHIPSSASKINHITDE 179 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P S + +F + + + HNA FD+ F+ ++ D + IDTL Sbjct: 180 TVHGAPDLSEVLPNLLNFIGD--SILVMHNASFDLKFLKYHAAKLGYD--ISNPFIDTLP 235 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++ N + Y + + H A D+ + V IK + + Sbjct: 236 TCKKLFTDFENYQLATVANYLKISTADTFHRACNDAEICGPVLIKCIDTAKNES 289 >gi|166032846|ref|ZP_02235675.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC 27755] gi|166027203|gb|EDR45960.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC 27755] Length = 232 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 14/211 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ + FDIETTGL +++ IIEIGA+++ + +R F F+ P P Sbjct: 1 MLKS----YVAFDIETTGLSPEHNEIIEIGALKVREGKVVDR-FIRFIEPE-AGIPPMIT 54 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GIT++ ++ + + EF +F + I HN +FD F+ + + + Sbjct: 55 QLTGITNDMVEGAGNCGEVLPEFLEFC--ERDTLIGHNVQFDFSFVKTKAKELGYTYDHM 112 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ L +LC+ Y I H A D+ + +Y M + Sbjct: 113 GIDTLKIAKVVHAD-LPSRKLGALCEYYHIENVAA--HRAYHDALATAKLYQSMAHFYEE 169 Query: 181 IN---FGFKTNEDRFFKEEKKTVPNISLLKR 208 F + + K+E T I+ L R Sbjct: 170 KEPKVFKPQPLAYKVKKKEPITAKQIAFLTR 200 >gi|127512799|ref|YP_001093996.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4] gi|126638094|gb|ABO23737.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4] Length = 204 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 7/172 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L +R FQ + P G S GIT+ Sbjct: 7 VVLDFETTGLSPLQGDRAIEIGAVKLQQGVVVDR-FQQLMNP-GFAVSSFIADYTGITNA 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D PS ++ ++F DF + +AHNA FD F+ AE RI+ + L Sbjct: 65 MLSDAPSCETVMADFADFIQGCH--LVAHNASFDQKFLTAEFARIDLEQ-SQPFACSLLL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R + L +L GI + H AL D+ + +++ + SQ Sbjct: 122 ARRLFQAVPNHQLGTLVNYLGIA-NDGVFHRALNDAEVTGALWLALSDAVSQ 172 >gi|296133462|ref|YP_003640709.1| DnaQ family exonuclease/DinG family helicase [Thermincola sp. JR] gi|296032040|gb|ADG82808.1| DnaQ family exonuclease/DinG family helicase [Thermincola potens JR] Length = 994 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 9/174 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTGL+ + IIE+ AV + TFQ + P +K + +L GI + Sbjct: 6 FVAVDIETTGLNPADSEIIEVAAVRFAEGRVL-ETFQSLVKPE-KKIPLKIQQLTGINES 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + + +F ++ + I HN FD+ F+ +R DTL Sbjct: 64 MVADAPACAEVTGMLAEFVHD--SIIIGHNIGFDLNFLQ-----HYHPVFIRARYYDTLP 116 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +AR P + + + S H A D+ +V+ + + Sbjct: 117 LARLVWPKAHGYRLANLVEALKIQLNGSPHRAFHDALAAKEVFCLALEVLRGLG 170 >gi|330901691|gb|EGH33110.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. japonica str. M301072PT] Length = 209 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 9/202 (4%) Query: 51 NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINA 108 R++ A+ +HGIT+EFL KP F+ + EF++F A + F Sbjct: 2 PDRESDEGAIGVHGITNEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFAL 61 Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 + D ++DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+ Sbjct: 62 MGSQDRADITQHCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILA 121 Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHD 225 DVY+ M G + ++ ++ E + + R R ++ EL EH+ Sbjct: 122 DVYLAMTGGQTSLSLAGNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAEHE 181 Query: 226 KTIQTLGKNA----IWDRYISS 243 + T+ K +W + + + Sbjct: 182 VRMSTIAKACGAPPLWVQMLEA 203 >gi|303235624|ref|ZP_07322231.1| UvrD/REP helicase [Prevotella disiens FB035-09AN] gi|302484071|gb|EFL47059.1| UvrD/REP helicase [Prevotella disiens FB035-09AN] Length = 893 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 3/115 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGIT 66 +VFD ETTGLD D IIEI A+ L + +++ P K L+ I Sbjct: 513 VVFDTETTGLDVYEDDIIEIAAIRLHNGKPVGEPLDLYIETNRPILEKLGENENPLYPIY 572 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 E L + + +A + HN +D ++ L R +D ++ Sbjct: 573 HEKLAKGELLQPNEAFQLFWNYVGDATLLGHNVMYDRNILHHNLLRHAQDCMENH 627 >gi|313202457|ref|YP_004041115.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688] gi|312441773|gb|ADQ85879.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688] Length = 473 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 7/163 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG DRI EI + + + +R +Q + P P +L GI D Sbjct: 5 YVLLDLETTGATPLVDRITEIALIRFENGQEVSR-WQTLVNPETA-IPPFIQRLTGIDDG 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F + E D A AHN +FD GF+ E +RI D +++ T+ Sbjct: 63 MVATAPHFKEVAGELLDHLEG--AVLCAHNVRFDHGFLKNEFKRIGID--LRQKVLCTVK 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ++R+ +P R+ ++H A+ D L D Sbjct: 119 LSRKLYPQHRSHSLDSIIERHSLQC-GARHRAMGDVVALVDFL 160 >gi|309779749|ref|ZP_07674506.1| DNA polymerase III [Ralstonia sp. 5_7_47FAA] gi|308921488|gb|EFP67128.1| DNA polymerase III [Ralstonia sp. 5_7_47FAA] Length = 216 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62 + D ETTGL+ + D I+ IGAV ++ + T+ ++ + P G Sbjct: 38 WVALDCETTGLNVRTDEIVSIGAVRIVGNRILTSEPLELLIRPQGEMRPESICVH 92 >gi|134093833|ref|YP_001098908.1| putative DNA polymerase/helicase [Herminiimonas arsenicoxydans] gi|133737736|emb|CAL60781.1| putative DNA-polymerase/ribonuclease/exonuclease [Herminiimonas arsenicoxydans] Length = 193 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 7/177 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + I D+ETTG + NDRI EIG V + +R + F+ P GR L GI+D Sbjct: 6 KLIFIDLETTGANLINDRITEIGIVTVNADGDIDR-WSSFVNP-GRPIPSFIQDLTGISD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P+F ++ + + +IAHNA+FD GF++ L R L Sbjct: 64 RMVATAPTFETLADTVRERLED--GLFIAHNARFDYGFLHHALARAGHALSIDVLCTVKL 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 S N + + + ++H AL D+ LL ++ K+ F Sbjct: 122 SRRFFPEEKRHNLDTLIARHG---LVPEARHRALADADLLWQLWEKLTASMPSEIFS 175 >gi|256043519|ref|ZP_05446446.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str. Rev.1] Length = 224 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 5/217 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 125 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + C +HGAL D++L + +Y+ + Sbjct: 126 VYCTMDGARRLW--RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQDVAKPL 183 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + K + + K ++ Sbjct: 184 PKINSWQPPKNLKPYPERPAGELPRRTPKRRSAAVSA 220 >gi|255523926|ref|ZP_05390889.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7] gi|296185167|ref|ZP_06853577.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium carboxidivorans P7] gi|255512357|gb|EET88634.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7] gi|296050001|gb|EFG89425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium carboxidivorans P7] Length = 1449 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 7/206 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG ++I EIG +++ D ++ F F+ P + P +++ ITD+ Sbjct: 426 YCVLDLETTGFSPVIEKITEIGIMKIKDGKVIDK-FSCFVNPK-KPIPPRVVEVTNITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D + +F + DF + + +AHNA+FD+GF+ + + D TL+ Sbjct: 484 MVRDAETIEQVFPKMLDFIKD--SVLVAHNAEFDIGFLKHNARVLGYDFDFTYLDTLTLA 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + I H AL D ++ M+ + + Sbjct: 542 QELFPDFKTYKL---GRIAKNLGIKVEVAHRALDDVDTTVKIFNVMLEKLKERGAETLQD 598 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 D + +E LK + Sbjct: 599 VDVYGSDEAAKKEEYKKLKTYHAIIL 624 >gi|194334228|ref|YP_002016088.1| DNA-directed DNA polymerase [Prosthecochloris aestuarii DSM 271] gi|194312046|gb|ACF46441.1| DNA-directed DNA polymerase [Prosthecochloris aestuarii DSM 271] Length = 180 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 5/165 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I D+ETTGL + DR+IE+ AV +++ F + K+HGIT Sbjct: 12 RVIAVDVETTGLSPRRGDRVIEVAAVAIVNG-VIEEHFCCLIN-VNAPIPTVVQKIHGIT 69 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E L + +++ EF F IAHNA FD+ FI EL+ + L+ S+ Sbjct: 70 PELLAGEKPPEAVWPEFLKFIGS--NILIAHNAPFDISFIRNELRFLGLSLLNGSQCTLA 127 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 S + + N G H A D+ L + ++ Sbjct: 128 FSRKKFPQLKNHKLENVARHVLGGMPKGIKLHRASGDALLTAMIW 172 >gi|114766856|ref|ZP_01445783.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Pelagibaca bermudensis HTCC2601] gi|114540977|gb|EAU44036.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseovarius sp. HTCC2601] Length = 401 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 4/111 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69 VFD ETTGL D +++IGAV +L+ + P G P + K+H ++D Sbjct: 279 VFDTETTGLLPHKDEVVQIGAVRVLNGRIVPGEVMDQLVDP-GIPIPPSSTKVHQVSDAM 337 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++ +P + F + + +AHNA FD+ F+ R+ + P Sbjct: 338 VRGQPDIAEAGRRFHR--FAKGSVIVAHNAPFDMAFLRRHRNRMGVEWDHP 386 >gi|307330749|ref|ZP_07609886.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] gi|306883641|gb|EFN14690.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] Length = 328 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 70/177 (39%), Gaps = 8/177 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ +L + + P P + +HG+T+E Sbjct: 26 YAVVDVETTGL-ARDDRIVSAAVYQLDARGAVQDHWYTLVNPQR---DPGPVWIHGLTEE 81 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I E + + +AHNA FD + E R R+ Sbjct: 82 VLEGAPRFPEIAGELAERLAD--RVLVAHNAAFDWSMLAREYARSKSAAPVRQRLCTIAL 139 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 P + L +L YG+ H AL D+ +L++ + + ++ Sbjct: 140 SKELGLPLPNHKLETLAAHYGVVQRRA--HHALDDARVLAETFRPSLHRAAETGLRL 194 >gi|257886903|ref|ZP_05666556.1| DNA polymerase III [Enterococcus faecium 1,141,733] gi|257822957|gb|EEV49889.1| DNA polymerase III [Enterococcus faecium 1,141,733] Length = 929 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L I Sbjct: 64 RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184 L L + G + H A D+ + + + + M I Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178 >gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] gi|297147193|gb|EDY59400.2| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] Length = 327 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 8/192 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + + P P + +HG+T + Sbjct: 23 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPER---DPGPVWIHGLTSD 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I EF + +AHNA FD I E R + R+ + Sbjct: 79 ALEGAPLFQDIADEFSSRLDG--RVLVAHNAVFDWQMIAREYARAGRVAPVSQRLCTIVL 136 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 P + L SL +G+ H AL D+ +L++ + + + + + Sbjct: 137 SKELGLPLPNHKLESLAAHFGVVQQRA--HHALDDARVLAEAFRPSLRAAAARSVRLPLH 194 Query: 189 EDRFFKEEKKTV 200 E R E Sbjct: 195 ECRPLTEWTDRA 206 >gi|302869008|ref|YP_003837645.1| DNA polymerase III subunit epsilon [Micromonospora aurantiaca ATCC 27029] gi|302571867|gb|ADL48069.1| DNA polymerase III, epsilon subunit [Micromonospora aurantiaca ATCC 27029] Length = 584 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 69/206 (33%), Gaps = 4/206 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG I EIGAV++ + + P G P L GIT Sbjct: 32 FVVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITQA 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + F +F ++ A +AHNA +DVGF+ A + +P + Sbjct: 90 MLLPAPPIEQVLPSFLEFVSD--AVLVAHNAPYDVGFLKAACAKHGYRWPNPRVLDTAAL 147 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R + + + H AL D+ DV ++ G Sbjct: 148 ARRVLTRDEVPNRKLGTLAAYFRTATQPTHRALDDAKATVDVLHGLIGRLGGHRVGTVGE 207 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 F + T L P Sbjct: 208 AIEFARAVTPTQRRKRHLADGLPKVP 233 >gi|163784927|ref|ZP_02179686.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159879804|gb|EDP73549.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 206 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 5/176 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTGL + N+ +IE+ A++ ++ P + + L GIT+ Sbjct: 12 FVIIDLETTGLSASNNSVIEVAAIKYQSGMIIDQ-LHHLTKPRENFIPSKVINLTGITNA 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + DKP F I+ E ++F + + +AHNAKFD+ F++ + + K+ L I Sbjct: 71 MVIDKPYFEDIYPEVYNFLKD--SIVVAHNAKFDISFLSEVHKIVFKNNLRLHYICTDNL 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 R + L+SL GI + KH AL D+ + M+ N Sbjct: 129 ARRIFPEIQKKSLSSLTNYLGINF--KQKHRALSDAQATLQAFQTMLEYLQDYNIN 182 >gi|283769479|ref|ZP_06342375.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia extructa W1219] gi|283103747|gb|EFC05133.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia extructa W1219] Length = 1442 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 7/206 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL +K D +IE GAV++ + + + Q+F+ P K I++E Sbjct: 393 YVVFDLETTGLSAKYDYMIEFGAVKIKNGLRLDSK-QLFIKPP-ISIPAFIEKKTNISNE 450 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ SFS + E + + A +AHNA FD F+N EL+R+++ PL I Sbjct: 451 MVRNAKSFSEVVDELLAYIGD--AVLVAHNASFDFPFLNEELRRLSRKPLTNPVIDTLDM 508 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 SR L + Y + S H A D+++L+D + ++V + F+ Sbjct: 509 ARAILSDRSRFALEYVSNHYKLNYSRSDAHRADYDANILADAFEHLLVDAKR---QFQVE 565 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 R +++ T + + + Sbjct: 566 TIRDLQDKVHTDSDFKRMFSKHAIVI 591 >gi|227551932|ref|ZP_03981981.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecium TX1330] gi|257895474|ref|ZP_05675127.1| DNA polymerase III [Enterococcus faecium Com12] gi|293378340|ref|ZP_06624509.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecium PC4.1] gi|227178933|gb|EEI59905.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecium TX1330] gi|257832039|gb|EEV58460.1| DNA polymerase III [Enterococcus faecium Com12] gi|292643204|gb|EFF61345.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecium PC4.1] Length = 929 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L I Sbjct: 64 RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184 L L + G + H A D+ + + + + M I Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178 >gi|293568616|ref|ZP_06679931.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1071] gi|291588576|gb|EFF20409.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1071] Length = 929 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L I Sbjct: 64 RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184 L L + G + H A D+ + + + + M I Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178 >gi|15618325|ref|NP_224610.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae CWL029] gi|15835943|ref|NP_300467.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138] gi|16752629|ref|NP_444893.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39] gi|4376690|gb|AAD18554.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029] gi|8163413|gb|AAF73657.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila pneumoniae AR39] gi|8978782|dbj|BAA98618.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138] gi|269303286|gb|ACZ33386.1| exonuclease, DNA polymerase III, epsilon subunit family [Chlamydophila pneumoniae LPCoLN] Length = 237 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 8/177 (4%) Query: 2 IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 + M ++F D ETTG + DRIIEI A S T+ +F ++ P EA Sbjct: 1 MSSQTMDVLIFYDTETTGTQIERDRIIEIAAY----NSVTDESFLTYVNPE-IPIPDEAS 55 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K+HGIT + + P F + F F E + +N FD + E +R + +PL Sbjct: 56 KIHGITTDAVLSAPKFPEAYEGFRKFCGEDSILVAHNNDGFDFPLLGKECRRHSLEPLTN 115 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 I + + +++L L + YG H AL D +L V+ ++ Sbjct: 116 RTIDSLKWAQKYRPDLPKHNLQYLRQVYGFA--ENQAHRALDDVVILHKVFTSLIGD 170 >gi|227495992|ref|ZP_03926303.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM 15434] gi|226834480|gb|EEH66863.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM 15434] Length = 547 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 68/205 (33%), Gaps = 4/205 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + I EIGAV + + P GR + L GIT+ Sbjct: 31 FVVVDLETTGAGPGSHTITEIGAVRVRGGQ-VEDELSTLVNP-GRAIPAQITVLTGITNA 88 Query: 69 FLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + P W E+ +AHNA+FDVG + + + D +P + Sbjct: 89 MVAGAPPVPEALERFLQWARLWEEETVLVAHNARFDVGHLRGAARALELDWHEPRVLDTL 148 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 R S + + R H AL D+ DV + + Sbjct: 149 ALARRAWTRSEVPNHRLATLASFVGSPTRPTHRALDDARATVDVLHAALEVLGPLGVTHL 208 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211 + S L +D P Sbjct: 209 EDLATATDPVPARRRAKSRLAQDLP 233 >gi|225573157|ref|ZP_03781912.1| hypothetical protein RUMHYD_01348 [Blautia hydrogenotrophica DSM 10507] gi|225039486|gb|EEG49732.1| hypothetical protein RUMHYD_01348 [Blautia hydrogenotrophica DSM 10507] Length = 234 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 5/50 (10%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50 M++ + FD+ETTGLD + + IIEIGA+++ + R F F+ P Sbjct: 1 MLKS----YVAFDVETTGLDPEQNEIIEIGALKVRNGKVVER-FMKFIRP 45 >gi|148245142|ref|YP_001219835.1| DNA polymerase III subunit epsilon [Clostridium kluyveri DSM 555] gi|146337022|gb|ABQ23633.1| DNA polymerase III, epsilon subunit related exonuclease [Clostridium kluyveri DSM 555] Length = 441 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 7/166 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTGL+ D IIEI A + + T+ + P P ++ I + Sbjct: 130 NFVVVDLETTGLEPTRDYIIEIAAAKYENNEII-DTYTTLVNPE-VFIPPNITNINHIDN 187 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +KD P + F +F +AHNA FD+ F+NA L + +P Sbjct: 188 DMVKDCPEIKEVLPGFMNFI--GQLPLVAHNAPFDIKFLNANLALLGLYLNNPIIDTLP- 244 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + L ++ + I + H AL D ++ +Y++ Sbjct: 245 ISRKLFSEIENHKLGTIKEYLNID--VQDSHRALPDCYVCGQIYLE 288 >gi|317056777|ref|YP_004105244.1| DNA polymerase III subunit alpha [Ruminococcus albus 7] gi|315449046|gb|ADU22610.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7] Length = 1500 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 6/165 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD+ETTG ++K D+IIEIGAV+L + ++ F + + P + L ITD+ Sbjct: 450 ICFDLETTGTNAKEDKIIEIGAVKLRNLEIVDK-FDMLVDPE-VPLTEFISNLTNITDDM 507 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LK + + F F + +AHNA FD GFI +R+ D S +S Sbjct: 508 LKGQADIRTAIDAFIAFCGDSPC-LVAHNAPFDTGFIRNTCERLGIDFNFSSVDTVPMSQ 566 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 H D+ +L ++I++ Sbjct: 567 LMLPQLERHKLNYVA---EHFGYGDFQHHRGCDDAEVLGHIFIEL 608 >gi|297529654|ref|YP_003670929.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. C56-T3] gi|297252906|gb|ADI26352.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. C56-T3] Length = 909 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 7/177 (3%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++ D+ETTG K DRII++G + D R F F P + +L I Sbjct: 4 RFVIIDLETTGNGPKKGDRIIQLGMAVVEDGLIVER-FASFFNPE-QPIPLFIQQLTNIN 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ ++ P F+ E + AHN FD+ F+ AEL+R P I Sbjct: 62 EQMVEGAPLFADKAGEIAALMHGAYFV--AHNVDFDLPFLQAELERAGWPPFAGPTIDTV 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L ++ G+ H A D+ + + ++I ++ S++ Sbjct: 120 ELARIVLPTAESYKLGDLARQLGLHHDRP--HQADSDAEVTAKLFIALLKRLSRLPL 174 >gi|309790215|ref|ZP_07684787.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] gi|308227800|gb|EFO81456.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] Length = 935 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 63/181 (34%), Gaps = 14/181 (7%) Query: 7 MRK---IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 M++ + D+ETTGL + D IIE AV+ D R F + P + + +L Sbjct: 1 MKERIFVALDVETTGLQAGIDEIIEFAAVKFRDGEILER-FSQLIAP-RQPLPLKITRLT 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT + L D P F+ + + F + N + Sbjct: 59 GITAQDLADAPHFNDVGGKIAGFIKSYPLVGHSINFDLGMLRAQGMNFTQPVYDTFDLAT 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 I + L ++ R GI H AL D+ + + V+ ++ + Sbjct: 119 I-------LMPQIAVYKLGAIADRLGIPH--PDDHRALNDAEVTAHVFTHLLGVIESLGL 169 Query: 184 G 184 Sbjct: 170 E 170 >gi|117928176|ref|YP_872727.1| hypothetical protein Acel_0968 [Acidothermus cellulolyticus 11B] gi|117648639|gb|ABK52741.1| DNA polymerase III, epsilon subunit [Acidothermus cellulolyticus 11B] Length = 566 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 66/203 (32%), Gaps = 4/203 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG I E+ AV++ Q + P GR P L GITD Sbjct: 26 FVVVDLETTGGAPGTGAITELAAVKVRGGEVLGE-LQTLVNP-GRPIPPFITVLTGITDA 83 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P ++ F + + +AHNA FDVGF+ A D + + Sbjct: 84 MVAPAPPIDAVLPTFLE--FATGSVLVAHNAPFDVGFLRAACAAAGYDWPEFEVLDTARL 141 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R + H AL D + DV ++ G + Sbjct: 142 ARRVLTREEAPNCTLATLARVFRAKTTPNHRALADVYATIDVLHGLLERLGSFGVGSLAD 201 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 F + T L P Sbjct: 202 VRTFSAKVTATQRQKRHLAERLP 224 >gi|293571662|ref|ZP_06682683.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E980] gi|291608332|gb|EFF37633.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E980] Length = 929 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L I Sbjct: 64 RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184 L L + G + H A D+ + + + + M I Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178 >gi|257898090|ref|ZP_05677743.1| DNA polymerase III [Enterococcus faecium Com15] gi|257836002|gb|EEV61076.1| DNA polymerase III [Enterococcus faecium Com15] Length = 929 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L I Sbjct: 64 RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184 L L + G + H A D+ + + + + M I Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178 >gi|227544617|ref|ZP_03974666.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri CF48-3A] gi|300910253|ref|ZP_07127713.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri SD2112] gi|227185400|gb|EEI65471.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri CF48-3A] gi|300892901|gb|EFK86261.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri SD2112] Length = 954 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 50/213 (23%), Positives = 77/213 (36%), Gaps = 8/213 (3%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG + DRII+IG V + D F+ + P K ++L GI D+ Sbjct: 21 VVDLETTGTNVNHGDRIIQIGCVLVQDGEIM-NHFETKINP-REKIPRSIVQLTGIEDKD 78 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P F I + E AHN FD F+NAEL+R L I Sbjct: 79 VRKAPLFEDIAGTIYSLLAETTFV--AHNVNFDFPFLNAELERAGYPSLSIPAIDTVTLS 136 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGFKTN 188 + L L I H H A+ D+ +D+ ++ + Sbjct: 137 QILLPTAKSFRLRDLTSSLHIEHDHP--HSAVSDAEATADLLNDLLKRVQELPTLTLEKI 194 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 ++T + + + EEL Sbjct: 195 TQLKLNLPQQTAGVFDAELQRRRKSPQPLSEEL 227 >gi|56420711|ref|YP_148029.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Geobacillus kaustophilus HTA426] gi|56380553|dbj|BAD76461.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426] Length = 909 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 7/177 (3%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++ D+ETTG K DRII++G + D R F F P + +L I Sbjct: 4 RFVIIDLETTGNGPKKGDRIIQLGMAVVEDGLIVER-FASFFNPE-QPIPLFIQQLTNIN 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E ++ P F+ E + AHN FD+ F+ AEL+R P I Sbjct: 62 EEMVEGAPLFADKAGEIAALMHGAYFV--AHNVDFDLPFLQAELERAGWPPFSGPTIDTV 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L ++ G+ + H A D+ + + ++I ++ S++ Sbjct: 120 ELARIVLPTAESYKLGDLARQLGLHHNRP--HQADSDAEVTAKLFIALLKRLSRLPL 174 >gi|219684048|ref|YP_002470430.1| hypothetical protein CKR_P20 [Clostridium kluyveri NBRC 12016] gi|219570556|dbj|BAH08539.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 444 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 7/166 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTGL+ D IIEI A + + T+ + P P ++ I + Sbjct: 133 NFVVVDLETTGLEPTRDYIIEIAAAKYENNEII-DTYTTLVNPE-VFIPPNITNINHIDN 190 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +KD P + F +F +AHNA FD+ F+NA L + +P Sbjct: 191 DMVKDCPEIKEVLPGFMNFI--GQLPLVAHNAPFDIKFLNANLALLGLYLNNPIIDTLP- 247 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + L ++ + I + H AL D ++ +Y++ Sbjct: 248 ISRKLFSEIENHKLGTIKEYLNID--VQDSHRALPDCYVCGQIYLE 291 >gi|15835150|ref|NP_296909.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg] gi|270285322|ref|ZP_06194716.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg] gi|270289339|ref|ZP_06195641.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss] gi|301336719|ref|ZP_07224921.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14] gi|8163241|gb|AAF73567.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum Nigg] Length = 232 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 66/168 (39%), Gaps = 7/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG DRI+EI A T +FQ + P EA K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRIVEIAAY----NGTTGESFQTLVNPE-IPIPAEATKIHGITTSE 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P F + +F DF N +N FD + E +R I Sbjct: 60 VANAPKFPEAYQQFSDFCGTDNILVAHNNNAFDYPLLLRECRRHGLPEPQLRTIDSLKWA 119 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + ++ L L + YG + H AL D L V+ ++ Sbjct: 120 KKYRTDLPQHSLQYLRQVYGFE--ENNAHRALDDVITLHRVFSVLVGD 165 >gi|317051112|ref|YP_004112228.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5] gi|316946196|gb|ADU65672.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5] Length = 169 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 5/170 (2%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D+ETTGL + R+IEI AV++ F + G S +HGIT Sbjct: 4 FVAIDVETTGLSPARGARVIEIAAVKMEQGQVIAE-FCSLIQ-VGVPVSAATTGVHGITT 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L +P+ I+ +F F ++ +AHNA FD+ F+++ELQR+ +PS L Sbjct: 62 AMLAGQPAPGEIWPQFIWFI--EHHPIVAHNAPFDMRFVHSELQRLGLSMANPSHCTLRL 119 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + G H AL D+ L + V+ +M Sbjct: 120 GRRKYPRLPNHKLEYLAQHVLGKLPPEIQLHRALGDARLTAMVWEEMRRE 169 >gi|258539791|ref|YP_003174290.1| DNA polymerase III PolC [Lactobacillus rhamnosus Lc 705] gi|257151467|emb|CAR90439.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705] Length = 1444 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 6/166 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P L ++ Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDPG---FPLSELTINLTHIT 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 S S A + HN FDVGF++ +R +D I Sbjct: 477 DDMVHGSKSEEEVFRLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLEL 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L++L K+Y +++ H H A +D+ + + Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEH--HHRANVDAEATGYLLYAL 580 >gi|229552421|ref|ZP_04441146.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|229314158|gb|EEN80131.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] Length = 1437 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 6/166 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P L ++ Sbjct: 414 YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDPG---FPLSELTINLTHIT 469 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 S S A + HN FDVGF++ +R +D I Sbjct: 470 DDMVHGSKSEEEVFRLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLEL 529 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L++L K+Y +++ H H A D+ + + Sbjct: 530 SRMLHPERKNHKLDTLAKQYKVSLEH--HHRANADAEATGYLLYAL 573 >gi|212638970|ref|YP_002315490.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Anoxybacillus flavithermus WK1] gi|212560450|gb|ACJ33505.1| DNA polymerase III, epsilon subunit and Rad3-related DNA helicase [Anoxybacillus flavithermus WK1] Length = 880 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 7/163 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V DIETTG K DRII+IG V + + F F+ P R +L GI Sbjct: 4 RFVVVDIETTGNAPKKEDRIIQIGFVVIEGDK-VKKRFSTFVQPE-RDIPLFIQQLTGID 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D P F I + + + A ++AHN +FD F+ E R P + Sbjct: 62 HAMVHDAPPFQHIAAMLVE--QWEGAYFVAHNVQFDWAFLQEEFIRSGIQPPTCRLLDTV 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 S LN L + + +H H A D+ + Sbjct: 120 ELARFLMPTQSSYKLNHLAEAL--SFAHDRPHQADYDAEATAQ 160 >gi|89099885|ref|ZP_01172757.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911] gi|89085443|gb|EAR64572.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911] Length = 934 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 7/177 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + +V D+ETTG + K D+II+ AV + ++ + L P G++ +L G+ Sbjct: 4 KYVVVDLETTGNSAKKGDKIIQFAAVVMEGGKIIDQ-YSSLLNP-GKEIPAFIEELTGLN 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + + + AHN FD+ F+ EL I Sbjct: 62 DSMVSDAPVFAEIAPKVMELLEDAYFV--AHNVLFDLSFLQEELLDAGFPGFYGPVIDTV 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 S L+ L + G I H H A D++ + + + ++ Sbjct: 120 ELARTVLPCSDSYKLSDLSAKEG--IMHDRPHQADSDAYATAKLLHIFLERLEELPL 174 >gi|152992740|ref|YP_001358461.1| DNA polymerase III subunit epsilon [Sulfurovum sp. NBC37-1] gi|151424601|dbj|BAF72104.1| DNA polymerase III, epsilon subunit [Sulfurovum sp. NBC37-1] Length = 206 Score = 70.0 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 1/166 (0%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGLD K D I+ IGAV++ + T+ +++ + + + Sbjct: 32 VVFDCETTGLDPKKDGIVSIGAVKIKENRILTDEAMHIYVKQEKQISHESITIHQIRHCD 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P +I + A + + + I Sbjct: 92 LEDAVPIEEAIEEFLYFIGGRTLAGYYLEFDVAMINKYIKPMYGITLPNKQEEVSAIYYD 151 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P DL +++ H AL D+ + + +Y+K+ Sbjct: 152 KKISTIPQGNIDLRFETIIEDLSLPKLQAHDALNDAVMTAMIYLKL 197 >gi|227534929|ref|ZP_03964978.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187685|gb|EEI67752.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 1437 Score = 70.0 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 6/166 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P L ++ Sbjct: 414 YVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQ-FEEMIDPG---FPLSELTINLTHIT 469 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 S S + A + HN FDVGF++ +R +D I Sbjct: 470 DDMVHGSKSEVDVFKLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLEL 529 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L++L K+Y +++ H H A D+ + + Sbjct: 530 SRMLHPERKNHKLDTLAKQYKVSLEH--HHRANADAEATGYLLYAL 573 >gi|320528407|ref|ZP_08029569.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204] gi|320131321|gb|EFW23889.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204] Length = 1449 Score = 70.0 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 4/171 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTGL D IIE GAV + + + +R Q+F+ P IT++ Sbjct: 394 YISFDLETTGLSCYFDHIIEFGAVRIKNSTIIDRK-QLFIKPP-VSIPGFITSKTNITND 451 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ F+ E D+ + +AHNA FD F+N EL+RI + PL I Sbjct: 452 MVKNAKPFAEAIDEILDYIKD--DVLVAHNATFDYYFLNEELRRIGRKPLTNVVIDTLDM 509 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 L +L + Y + + H A D+ L+DV++ ++ Sbjct: 510 SRAVLPDRRAYRLGNLSRYYHVNYNEEEAHRADFDAGALADVFLCLLKDAK 560 >gi|269837031|ref|YP_003319259.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter thermophilus DSM 20745] gi|269786294|gb|ACZ38437.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter thermophilus DSM 20745] Length = 966 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 2/85 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+E TG+D + D IIEI A++ + +R ++ + P G L GI + Sbjct: 5 YVALDLEATGMDPERDEIIEIAAIKFRNDRVLDR-WESLVRPRG-PIPFNITSLTGIGAK 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE 93 ++ P F + DF Sbjct: 63 DVRRAPIFPVVAPRLRDFVRNHPIV 87 >gi|116495060|ref|YP_806794.1| DNA polymerase III PolC [Lactobacillus casei ATCC 334] gi|122263523|sp|Q038M0|DPO3_LACC3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116105210|gb|ABJ70352.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus casei ATCC 334] Length = 1444 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 6/166 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P L ++ Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQ-FEEMIDPG---FPLSELTINLTHIT 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 S S + A + HN FDVGF++ +R +D I Sbjct: 477 DDMVHGSKSEVDVFKLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLEL 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L++L K+Y +++ H H A D+ + + Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEH--HHRANADAEATGYLLYAL 580 >gi|329929349|ref|ZP_08283102.1| DNA polymerase III, alpha subunit, Gram-positive type [Paenibacillus sp. HGF5] gi|328936718|gb|EGG33161.1| DNA polymerase III, alpha subunit, Gram-positive type [Paenibacillus sp. HGF5] Length = 1438 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 4/114 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL ++IIE+ AV++ + + R + F+ P+ R +L I D+ Sbjct: 421 YVVFDIETTGLSITANKIIELAAVKMHEGKEIGR-YATFVNPHER-IPYHIQQLTNINDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 +KD P + EF +F + +AHNA+FD+GFI A L+ D L+ Sbjct: 479 MVKDAPELEPVLKEFVEFVGD--GVLVAHNARFDMGFIQAALKNAGMDTLENPY 530 >gi|326406526|gb|ADZ63597.1| DNA polymerase III subunit epsilon [Lactococcus lactis subsp. lactis CV56] Length = 277 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 4/167 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +VFD ETTG ++ + II+IGAV+ + ++ F + S E +L GI Sbjct: 4 KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYVSTEITQLTGIKP 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L ++P+ I EF DF +AHNA FD+ F+ + ++ R+ DTL Sbjct: 64 ADLLNQPTIEEILPEFLDFIKG--HLLVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ S L + ++ H AL D + + +Y + Sbjct: 122 AESKKLLTMSSYALENFKDLL--EMNDLRSHDALNDCLITAKLYQYL 166 >gi|253582216|ref|ZP_04859439.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium ATCC 27725] gi|251835755|gb|EES64293.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium ATCC 27725] Length = 1446 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 6/176 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ET GL+S IIEIGAV+L R + + P + + +L I+ Sbjct: 419 NFVVFDLETMGLNSHEHEIIEIGAVKLQGTRIVER-YSQLVNPK-KTIPKKIQELTNISQ 476 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + P+ + +F +F + AHNA FD+GFI ++++I P+ I Sbjct: 477 DMVDNMPTIEEVLPKFMEFVGDSTMV--AHNAPFDMGFIRRDVKKIMGYDYKPAVIDTLQ 534 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 L +L K G++ + H A+ DS ++++I + ++ Sbjct: 535 MARDLYPELKAYGLKNLNKVLGLS--LDNHHRAVDDSQATANMFIIFIEKYMEMGI 588 >gi|116696325|ref|YP_841901.1| putative exonuclease [Ralstonia eutropha H16] gi|113530824|emb|CAJ97171.1| putative exonuclease [Ralstonia eutropha H16] Length = 220 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 23/46 (50%), Positives = 32/46 (69%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53 R +VFDIETTGLDS+ I+EIGA+ + S + TFQV + P+ + Sbjct: 51 RFVVFDIETTGLDSERHEILEIGAIRVNRNSNNHDTFQVLVKPSRK 96 >gi|315443891|ref|YP_004076770.1| exonuclease, DNA polymerase III subunit epsilon family [Mycobacterium sp. Spyr1] gi|315262194|gb|ADT98935.1| exonuclease, DNA polymerase III, epsilon subunit family [Mycobacterium sp. Spyr1] Length = 617 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 68/172 (39%), Gaps = 7/172 (4%) Query: 9 KIVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +V D+ETTG + DR I EIGAV++ F + P GR P+ + L GI Sbjct: 22 FVVVDLETTGGRASGDRHDAITEIGAVKVRGGEVLGE-FATLVDP-GRAIPPQIVALTGI 79 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + D P S+ F +F A +AHNA FD+GF+ A +R P + Sbjct: 80 TSAMVYDAPRIESVLPSFLEFCRG--AVLVAHNAGFDMGFLRAAAERNQVPWPKPPVLCT 137 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R + S H AL D+ DV ++ Sbjct: 138 VALARRVLTRDEAPSVKLSALARLFGASTTPTHRALDDARATVDVLHALIER 189 >gi|294616364|ref|ZP_06696157.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1636] gi|291590878|gb|EFF22594.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1636] Length = 929 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L I Sbjct: 64 RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184 L L + G + H A D+ + + + + M I Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRNLPIITLE 178 >gi|145223545|ref|YP_001134223.1| hypothetical protein Mflv_2958 [Mycobacterium gilvum PYR-GCK] gi|145216031|gb|ABP45435.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK] Length = 617 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 68/172 (39%), Gaps = 7/172 (4%) Query: 9 KIVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +V D+ETTG + DR I EIGAV++ F + P GR P+ + L GI Sbjct: 22 FVVVDLETTGGRASGDRHDAITEIGAVKVRGGEVLGE-FATLVDP-GRAIPPQIVALTGI 79 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + D P S+ F +F A +AHNA FD+GF+ A +R P + Sbjct: 80 TSAMVYDAPRIESVLPSFLEFCRG--AVLVAHNAGFDMGFLRAAAERNQVPWPKPPVLCT 137 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R + S H AL D+ DV ++ Sbjct: 138 VALARRVLTRDEAPSVKLSALARLFGASTTPTHRALDDARATVDVLHALIER 189 >gi|325269993|ref|ZP_08136602.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM 16608] gi|324987716|gb|EGC19690.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM 16608] Length = 896 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 3/120 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGIT 66 +VFD ETTGLD +D IIEI A+ + +++ P K + ++ I Sbjct: 515 VVFDTETTGLDVFSDDIIEIAAIRIKGGEIIGDPLDLYIETDKPILPKLGDKENPMYSIY 574 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + + HNA +D I+ L+R D + Sbjct: 575 HAKMAADRLLAPADALQRFLAYIGTRPVLGHNASYDYNIIDNCLKRYCNDTMQTHGNRCF 634 >gi|313899185|ref|ZP_07832705.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium sp. HGF2] gi|312956008|gb|EFR37656.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium sp. HGF2] Length = 1448 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 5/228 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL S+ D IIE G + D + ++ Q+F+ P S +L GIT+E Sbjct: 398 YCVFDLETTGLSSRFDHIIEFGGQIVKDRACI-KSLQLFIKPPVA-LSAFTTELTGITEE 455 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ SF+ E DF + + +AHNA FD F+N EL RI + P+ I Sbjct: 456 HMKNAKSFADSIDEILDFIGD--SILVAHNATFDYNFLNDELARIGRPPIMNPVIDTLDL 513 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187 + L + + YGI H A D+ +L+ Y+ M+ I N Sbjct: 514 ARSMQADRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLAQTYMNMLNDLKHIKNLQELQ 573 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + K V ++++L ++ + + H + K+ Sbjct: 574 DMQTAESFRKVRVKHVTILAKNMAGLKELFELVTLSHTSYLAYSSKST 621 >gi|86741790|ref|YP_482190.1| hypothetical protein Francci3_3104 [Frankia sp. CcI3] gi|86568652|gb|ABD12461.1| DNA polymerase III, epsilon subunit [Frankia sp. CcI3] Length = 584 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 78/220 (35%), Gaps = 8/220 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG D I EIGAV + + P G P L GITD Sbjct: 30 FVVFDLETTGTSPGRDEITEIGAVRVRGGRILAEM-ATLVRP-GVGIPPMVSVLTGITDV 87 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR----II 124 + P + + F + + A +AHNA FD+GF+ A ++ I Sbjct: 88 MVATAPPVTQVLPTFLE--FARGAVLVAHNAPFDLGFLRAAVELCGYPVPVWEYLDTLRI 145 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + R + P R + R + HR+ A +L ++ ++ G Sbjct: 146 ARRVVTRDESPDCRLTSLASLFRSPVEPRHRALADARATVDVLHGLFERLGNAGVTTLED 205 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224 R +++ L ++ +E + Sbjct: 206 LHDYSSRVSPAQRRKRHLADGLPTGPGVYIFRDADERALY 245 >gi|226310490|ref|YP_002770384.1| hypothetical protein BBR47_09030 [Brevibacillus brevis NBRC 100599] gi|226093438|dbj|BAH41880.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 235 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 7/176 (3%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTG D II +GAV + + +F + P GR P L GITD Sbjct: 54 VVVDLETTGFYPDHGDAIISMGAVAMRGEHLLLGDSFYTLVNP-GRAIPPHIRSLTGITD 112 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + D P S F+ + + +AH+++ + F+ + L + ++ P + L Sbjct: 113 DMVADAPPLLEALSRFFQYVGD--RPLVAHHSRHEREFLRSGLWKTSRRPFTHRMLDTML 170 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 I +P L++LC + I +H A D+ ++ K +V F Sbjct: 171 LIRLLNNPIGNGSLDALCAAH--DIPISRRHHAYCDALAAGTLWAKYLVKAQSQGF 224 >gi|261407941|ref|YP_003244182.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10] gi|261284404|gb|ACX66375.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10] Length = 1438 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 4/114 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL ++IIE+ AV++ + + R + F+ P+ R +L I D+ Sbjct: 421 YVVFDIETTGLSITANKIIELAAVKMHEGKEIGR-YATFVNPHER-IPYHIQQLTNINDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 +KD P + EF +F + +AHNA+FD+GFI A L+ D L+ Sbjct: 479 MVKDAPELEPVLKEFVEFVGD--GVLVAHNARFDMGFIQAALKNAGMDTLENPY 530 >gi|154500376|ref|ZP_02038414.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC 29799] gi|150270881|gb|EDM98164.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC 29799] Length = 1390 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 57/238 (23%), Positives = 103/238 (43%), Gaps = 10/238 (4%) Query: 9 KIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++V FDIETTGLD++ D IIEIGAV L + + TF F+ P GR S E ++L ITD Sbjct: 368 EVVCFDIETTGLDNRRDVIIEIGAVILRNG-EIAETFDTFVSP-GRPLSREIVELTSITD 425 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L+ PS F + + AHNA+FD+GFI +R S L Sbjct: 426 KMLEGAPSQEEAIRAFLE--FAGDRPLAAHNAEFDMGFIAEGCRRYGIPFEKTSIDTLIL 483 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQINFG 184 + D+ + R HR+ A + +++L + + + + + Sbjct: 484 AQNLLPDLGKYKLDIVAEHLRLPPFKHHRADADAGMVAYMLVPFFKMLEDLGIHTLQSIN 543 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT--LGKNAIWDRY 240 + R + ++ ++ +L ++ + H + + + ++ ++Y Sbjct: 544 PEMTRLRVKGKARRQPKHLIVLAKNNMGLRNLYTLISKAHLEHFKRYPIMPKSLINQY 601 >gi|302387397|ref|YP_003823219.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum WM1] gi|302198025|gb|ADL05596.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum WM1] Length = 222 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 5/167 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTG+ D I+EI A+++ + + P G A +++GITD Sbjct: 17 NYVVFDLETTGISPAEDSILEISAIKVKGHEPVAE-LNTLVNP-GTHIPAGATRINGITD 74 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +K P + +F F + HN + + P+ +DTL Sbjct: 75 DMVKAAPGLKEVLPDFLSFIEG--EILVGHNIQSFDLLFLYRAAQELFGKEVPNDYVDTL 132 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A+ P + Y I+ H AL D + Y +M Sbjct: 133 FMAKTTLPQLGRHRLTDISAY-FHINTEGAHRALSDCVMNQKCYEQM 178 >gi|258508612|ref|YP_003171363.1| DNA polymerase III PolC [Lactobacillus rhamnosus GG] gi|257148539|emb|CAR87512.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG] gi|259649919|dbj|BAI42081.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG] Length = 1444 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 6/166 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P L ++ Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDPG---FPLSELTINLTHIT 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 S S A + HN FDVGF++ +R +D I Sbjct: 477 DDMVHGSKSEEEVFRLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLEL 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L++L K+Y +++ H H A D+ + + Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEH--HHRANADAEATGYLLYAL 580 >gi|328868531|gb|EGG16909.1| DNA polymerase III [Dictyostelium fasciculatum] Length = 782 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 5/170 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I FD+ETTG S+ D IIE+GAVEL+D +T TFQ + P PEA K+H + Sbjct: 401 RVICFDLETTGFGSE-DSIIEVGAVELIDGCRTGLTFQSYAKPK-APIHPEAAKVHNLNA 458 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L P + + F DF + A +AHN FD + E+ R + T+ Sbjct: 459 YLLSSAPPIEFVLASFMDFVGD--ALLVAHNLAFDHRMLIQEMMRSKIPINRSKKCFCTM 516 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL-LDSHLLSDVYIKMMV 176 R+ +L+++ + I + +DS +L+ VY + Sbjct: 517 KYYRKVIKDVSYNLDAISSQLKIDKLLLRRTHGALVDSEILAIVYSHLTR 566 >gi|314997169|ref|ZP_07862155.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133a01] gi|313588743|gb|EFR67588.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133a01] Length = 929 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L I Sbjct: 64 RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184 L L + G + H A D+ + + + + M I Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178 >gi|152979979|ref|YP_001352248.1| hypothetical protein mma_0558 [Janthinobacterium sp. Marseille] gi|151280056|gb|ABR88466.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 195 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 7/167 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + I D+ETTG + NDRI EIG V + +R + F+ P GR L GI+D Sbjct: 6 KLIFVDLETTGANLVNDRITEIGIVAVDPDGCIDR-WSTFVNP-GRPIPEFIQGLTGISD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ P F ++ + + +IAHNA+FD GF+ + + + ++ T+ Sbjct: 64 EMVESAPMFETLADTVRERLQD--GLFIAHNARFDYGFL--HHAFVRSGHVLNAEMLCTV 119 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R P+ + ++H AL D+ LL ++ K+ Sbjct: 120 KLSRALFPAEKKHNLDSLIARHDL-IPEARHRALADADLLWQLWRKL 165 >gi|304384865|ref|ZP_07367211.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284] gi|304329059|gb|EFL96279.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284] Length = 1436 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 70/190 (36%), Gaps = 5/190 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++FD+ETTGL + D++IE+ AV++ + + + F+ F+ P ++ + Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDE-FEEFIDPG---FPLSETTINLTSI 474 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + S S ++A + HN FD+GF+N R + + I Sbjct: 475 TNEMVRGSLSEKEVFTKFREFYEDAIIVGHNVTFDIGFMNTGYLRHGMEEIKNPIIDTLT 534 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 LN+L K++ + + H Y+ + + + Sbjct: 535 LARFLYPTLKGYRLNTLAKKFNVALEHH-HRAIYDAETTGHLCYLFLKDAEERYGIEYHD 593 Query: 188 NEDRFFKEEK 197 + E Sbjct: 594 QLNDHMTEND 603 >gi|261209451|ref|ZP_05923814.1| DNA polymerase III [Enterococcus faecium TC 6] gi|289566622|ref|ZP_06447041.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium D344SRF] gi|260076579|gb|EEW64343.1| DNA polymerase III [Enterococcus faecium TC 6] gi|289161563|gb|EFD09444.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium D344SRF] Length = 929 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L I Sbjct: 64 RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184 L L + G + H A D+ + + + + M I Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178 >gi|224826734|ref|ZP_03699834.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] gi|224600954|gb|EEG07137.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] Length = 707 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 8/167 (4%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGL+ D II+IGA +++ F+ + P R +++K+HGIT E Sbjct: 519 VFDTETTGLEPAAGDEIIQIGATRIVNRRLLQHEGFEQLIDP-RRPLPEDSVKIHGITPE 577 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L +P ++ F + + +AHNA FD+ F+ + P LS Sbjct: 578 MLAGQPPLDTVLPAFRAYCAD--TVLVAHNAAFDMRFLQLKEASTGVRFDQPVLDTLLLS 635 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A + L ++ +R G+TI R H A+ D+ + +V++KM+ Sbjct: 636 -AVLHPNQESHRLEAIAERLGVTIIGR--HTAMGDAIVTGEVFLKMI 679 >gi|191638563|ref|YP_001987729.1| DNA polymerase III PolC [Lactobacillus casei BL23] gi|190712865|emb|CAQ66871.1| DNA polymerase III polC-type (PolIII) [Lactobacillus casei BL23] gi|327382601|gb|AEA54077.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus casei LC2W] gi|327385799|gb|AEA57273.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus casei BD-II] Length = 1444 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 6/166 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P L ++ Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQ-FEEMIDPG---FPLSELTINLTHIT 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 S S + A + HN FDVGF++ +R +D I Sbjct: 477 DDMVHGSKSEVDVFKLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLEL 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L++L K+Y +++ H H A D+ + + Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEH--HHRANADAEATGYLLYAL 580 >gi|294619947|ref|ZP_06699320.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1679] gi|291593804|gb|EFF25305.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1679] Length = 929 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L I Sbjct: 64 RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184 L L + G + H A D+ + + + + M I Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178 >gi|257884118|ref|ZP_05663771.1| DNA polymerase III [Enterococcus faecium 1,231,501] gi|257819956|gb|EEV47104.1| DNA polymerase III [Enterococcus faecium 1,231,501] Length = 929 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L I Sbjct: 64 RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184 L L + G + H A D+ + + + + M I Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178 >gi|239631345|ref|ZP_04674376.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066623|ref|YP_003788646.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang] gi|239525810|gb|EEQ64811.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439030|gb|ADK18796.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus casei str. Zhang] Length = 1444 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 6/166 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P L ++ Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQ-FEEMIDPG---FPLSELTINLTHIT 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 S S + A + HN FDVGF++ +R +D I Sbjct: 477 DDMVHGSKSEVDVFKLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLEL 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L++L K+Y +++ H H A D+ + + Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEH--HHRANADAEATGYLLYAL 580 >gi|50365104|ref|YP_053529.1| DNA polymerase III alpha subunit [Mesoplasma florum L1] gi|50363660|gb|AAT75645.1| DNA polymerase III alpha subunit [Mesoplasma florum L1] Length = 1493 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 9/209 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEA 59 IR++KM +VFD+ETTGL + + IIE GAV T +T + P + Sbjct: 435 IRESKM--VVFDLETTGLSPEFNEIIEFGAVVFDP--VTGKTTKYDYLFKPK-QPLKQFT 489 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + L IT E L+DK + F + ++ + + +AHNA FD F+N+ +R+ L Sbjct: 490 IDLTNITPEMLEDKKNIDDDFDKIYELIKD--SILVAHNANFDFNFLNSLSKRLGYGDLQ 547 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + I + + L ++CK++GI H D+ +L+D++ K++ Sbjct: 548 NTVIDTLTLSRLVRPALKSHRLGAVCKKFGILYDEHVAHRGDYDADVLNDLFFKIIAELK 607 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKR 208 + + E L R Sbjct: 608 LTTPIIYDADLIKLEPENDKDNINLLRSR 636 >gi|229918664|ref|YP_002887310.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b] gi|229470093|gb|ACQ71865.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b] Length = 1430 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 12/225 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++IIE+ V++ D +R F+ F P S ++L GITD+ Sbjct: 410 YVVFDVETTGLSAVYNKIIELAGVKIKDGEIIDR-FEAFADPKHA-LSATTIELTGITDD 467 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +P I F D+ + + +AHNA FD+GF+ A L+ +P D I Sbjct: 468 MVQGQPDPEVITKRFVDWCGD--SILVAHNASFDMGFLEATLRSGGHEPDDYPVIDTLEL 525 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L KR+ I H A+ D+ + + +K++ Q+ F T+ Sbjct: 526 ARTLMPTLKNHRLNTLAKRF--DIELTQHHRAIYDAEATAYLLMKLLDLAKQM-FEMTTH 582 Query: 189 EDRFFKEEKKTVPNIS-----LLKRDKPLFTRITKEELDEHDKTI 228 K K KP + + H + Sbjct: 583 RSLNAKVGSDVSKIRPFHATIYAKNKKPGLRHLYELISLSHIDYL 627 >gi|15672964|ref|NP_267138.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis Il1403] gi|12723925|gb|AAK05080.1|AE006332_9 DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis Il1403] Length = 277 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 4/167 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +VFD ETTG ++ + II+IGAV+ + ++ F + S E +L GI Sbjct: 4 KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYVSTEITQLTGIKP 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L ++P+ I EF DF +AHNA FD+ F+ + ++ R+ DTL Sbjct: 64 ADLLNQPTIEEILPEFLDFIKG--HLLVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ S L + ++ H AL D + + +Y + Sbjct: 122 AESKKLLTMSSYALENFKDLL--EMNDLRSHDALNDCLITAKLYQYL 166 >gi|69247318|ref|ZP_00604300.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase [Enterococcus faecium DO] gi|257890489|ref|ZP_05670142.1| DNA polymerase III [Enterococcus faecium 1,231,410] gi|258614363|ref|ZP_05712133.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Enterococcus faecium DO] gi|260558928|ref|ZP_05831115.1| DNA polymerase III [Enterococcus faecium C68] gi|293559766|ref|ZP_06676286.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1162] gi|314940162|ref|ZP_07847340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133a04] gi|314942421|ref|ZP_07849264.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133C] gi|314950181|ref|ZP_07853466.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0082] gi|314952303|ref|ZP_07855314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133A] gi|314994254|ref|ZP_07859557.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133B] gi|68194888|gb|EAN09359.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase [Enterococcus faecium DO] gi|257826849|gb|EEV53475.1| DNA polymerase III [Enterococcus faecium 1,231,410] gi|260075036|gb|EEW63351.1| DNA polymerase III [Enterococcus faecium C68] gi|291606249|gb|EFF35663.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1162] gi|313591341|gb|EFR70186.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133B] gi|313595562|gb|EFR74407.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133A] gi|313598821|gb|EFR77666.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133C] gi|313640601|gb|EFS05181.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133a04] gi|313643491|gb|EFS08071.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0082] Length = 929 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L I Sbjct: 64 RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184 L L + G + H A D+ + + + + M I Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178 >gi|312140182|ref|YP_004007518.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S] gi|311889521|emb|CBH48838.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S] Length = 577 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 65/169 (38%), Gaps = 4/169 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG S++D I EIGAV++ + P GR P ++L GIT Sbjct: 29 FVVVDLETTGGSSESDAITEIGAVKVRGGEVLGE-LGTLVDP-GRAIPPYIVELTGITTA 86 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P ++ F + A +AHNA FDVGF+ A R + Sbjct: 87 MVRTAPRIDTVLPAFLE--FAGGAVLVAHNAGFDVGFLKAAAARQGLPWPKFQVLCTVKL 144 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R + + H AL D+ DV ++ Sbjct: 145 ARRVLGRDEAPSVKLSALAALLGADTTPTHRALDDARATVDVLHALIGR 193 >gi|325676936|ref|ZP_08156608.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707] gi|325552236|gb|EGD21926.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707] Length = 577 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 65/169 (38%), Gaps = 4/169 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG S++D I EIGAV++ + P GR P ++L GIT Sbjct: 29 FVVVDLETTGGSSESDAITEIGAVKVRGGEVLGE-LGTLVDP-GRAIPPYIVELTGITTA 86 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P ++ F + A +AHNA FDVGF+ A R + Sbjct: 87 MVRTAPRIDTVLPAFLE--FAGGAVLVAHNAGFDVGFLKAAAARQGLPWPKFQVLCTVKL 144 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R + + H AL D+ DV ++ Sbjct: 145 ARRVLGRDEAPSVKLSALAALLGADTTPTHRALDDARATVDVLHALIGR 193 >gi|294622016|ref|ZP_06701159.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium U0317] gi|291598406|gb|EFF29480.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium U0317] Length = 929 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L I Sbjct: 64 RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184 L L + G + H A D+ + + + + M I Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178 >gi|270290316|ref|ZP_06196541.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4] gi|270281097|gb|EFA26930.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4] Length = 1436 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 70/190 (36%), Gaps = 5/190 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++FD+ETTGL + D++IE+ AV++ + + + F+ F+ P ++ + Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDE-FEEFIDPG---FPLSETTINLTSI 474 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + S S ++A + HN FD+GF+N R + + I Sbjct: 475 TNEMVRGSLSEKEVFTKFREFYEDAIIVGHNVTFDIGFMNTGYLRHGMEEIKNPIIDTLT 534 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 LN+L K++ + + H Y+ + + + Sbjct: 535 LARFLYPTLKGYRLNTLAKKFNVALEHH-HRAIYDAETTGHLCYLFLKDAEERYGIEYHD 593 Query: 188 NEDRFFKEEK 197 + E Sbjct: 594 QLNDHMTEND 603 >gi|260437725|ref|ZP_05791541.1| DNA polymerase III PolC-type [Butyrivibrio crossotus DSM 2876] gi|292809747|gb|EFF68952.1| DNA polymerase III PolC-type [Butyrivibrio crossotus DSM 2876] Length = 234 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 8/106 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI+ + D+ETTGL +++IIE+GAV D ++ + + P G Sbjct: 1 MIKD----FVAIDLETTGLSPYDNKIIELGAVRYRDGKPVDQ-YNTLINP-GVHIPERIT 54 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 ++ GI D+ + P +F N + HN FD FI Sbjct: 55 EITGIDDDMVSKAPYIDDELDRIMEFI--GNDVILGHNVIFDYTFI 98 >gi|199597102|ref|ZP_03210534.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus rhamnosus HN001] gi|199591906|gb|EDY99980.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus rhamnosus HN001] Length = 1444 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 6/166 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P L ++ Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDPG---FPLSELTINLTHIT 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 S S A + HN FDVGF++ +R +D I Sbjct: 477 DDMVHGSKSEEEVFRLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLEL 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L++L K+Y +++ H H A D+ + + Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEH--HHRANADAEATGYLLYAL 580 >gi|281491483|ref|YP_003353463.1| DNA polymerase III subunit epsilon [Lactococcus lactis subsp. lactis KF147] gi|281375201|gb|ADA64714.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis KF147] Length = 277 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 4/167 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +VFD ETTG ++ + II+IGAV+ + ++ F + S E +L GI Sbjct: 4 KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYVSTEITQLTGIKP 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L ++P+ I EF DF +AHNA FD+ F+ + ++ R+ DTL Sbjct: 64 ADLLNQPTIEEILPEFLDFIKG--HLLVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ S L + ++ H AL D + + +Y + Sbjct: 122 AESKKLLTMSSYALENFKDLL--EMNDLRSHDALNDCLITAKLYQYL 166 >gi|269127278|ref|YP_003300648.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM 43183] gi|268312236|gb|ACY98610.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM 43183] Length = 605 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 9/180 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + I E+GAV++ + F + P G P L GIT + Sbjct: 44 FVVVDLETTGGSPADSAITEVGAVKVRGGERLGE-FATLVDP-GVPIPPFITALTGITQQ 101 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR----II 124 + + P S++ F + + +AHNA FD+GF+ A + + Sbjct: 102 MVTNAPPMSAVLPAFLE--FARGCVLVAHNAPFDIGFLRAACTAHDHPWPAFPVVDTADL 159 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + R + P+ + + R G HR+ A +L + I+ + + Sbjct: 160 ARRVLTREEVPNCKLATLARYFRTGTEPCHRALADARATVDVLHGL-IERLGSYGVHSLE 218 >gi|169334141|ref|ZP_02861334.1| hypothetical protein ANASTE_00535 [Anaerofustis stercorihominis DSM 17244] gi|169258858|gb|EDS72824.1| hypothetical protein ANASTE_00535 [Anaerofustis stercorihominis DSM 17244] Length = 204 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 5/161 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTGL+ + IIE+GAV++ D + F F+ P SPE KL GI + + Sbjct: 26 VIDIETTGLNPDENEIIEVGAVKVRDRKIVDE-FSSFVSPKKDIISPEIRKLTGIDEAMI 84 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + + F +F + + HN FD+ F+ +R + L + Sbjct: 85 EGADQIEDVIPRFNEFIDG--EILLGHNVNFDINFLYDNYERYSDFYLSNDYVDLLKISR 142 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + L ++ K+ GI +H A+ D + Sbjct: 143 KLSPEFENHKLETVLKKLGIK--VDQQHRAVSDCIDAHHCF 181 >gi|257883091|ref|ZP_05662744.1| DNA polymerase III [Enterococcus faecium 1,231,502] gi|257818749|gb|EEV46077.1| DNA polymerase III [Enterococcus faecium 1,231,502] Length = 929 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L I Sbjct: 64 RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184 L L + G + H A D+ + + + + M I Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178 >gi|257879980|ref|ZP_05659633.1| DNA polymerase III [Enterococcus faecium 1,230,933] gi|257894416|ref|ZP_05674069.1| DNA polymerase III [Enterococcus faecium 1,231,408] gi|257814208|gb|EEV42966.1| DNA polymerase III [Enterococcus faecium 1,230,933] gi|257830795|gb|EEV57402.1| DNA polymerase III [Enterococcus faecium 1,231,408] Length = 929 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L I Sbjct: 64 RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184 L L + G + H A D+ + + + + M I Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178 >gi|295425759|ref|ZP_06818444.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664] gi|295064567|gb|EFG55490.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664] Length = 318 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 78/232 (33%), Gaps = 14/232 (6%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 DIETTGL DR+IE+GA+++ + + + + + P + E Sbjct: 36 LDIETTGLSPYRDRVIELGAIKVRNGEIVDE-YSHLVAYDKSNCVPAFITKLNGITEEKI 94 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + + I +N FD+ FI ++ + L+ + + Sbjct: 95 INEGIPVAEAIHDFRQFIGDDVIIGYNVNFDLNFIYDLAKKYHLPELNNNYVDVLRLARA 154 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--------IKMMVGGSQINF 183 N L +R GI +H L DS VY ++V + Sbjct: 155 YYPKERHNRLIDCMQRAGIA--QVEQHRGLDDSIDTKKVYDDFHAHFTPNLLVQAQKKIK 212 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 F +++ + ++ K ++ E+ +K I LG A Sbjct: 213 NFSLTDEKLSPWQIGFRNPVNNKKIVLTDHLKMNLEDA---NKMIDNLGGQA 261 >gi|257469515|ref|ZP_05633607.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] gi|317063759|ref|ZP_07928244.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] gi|313689435|gb|EFS26270.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] Length = 1446 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 6/175 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ET GL+S IIEIGAV+L R + + P + + +L I+ + Sbjct: 420 FVVFDLETMGLNSHEHEIIEIGAVKLQGTRIVER-YSQLVNPK-KPIPKKIQELTNISQD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P+ + +F +F + AHNA FD+GFI ++++ P+ I Sbjct: 478 MVDNMPTIEEVLPKFMEFVGDSTMV--AHNAPFDMGFIRRDVKKFMGYDYKPAVIDTLQM 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 L +L K G++ + H A+ DS ++++I + + Sbjct: 536 ARDLYPELKAYGLKNLNKVLGLS--LDNHHRAVDDSQATANMFIIFIEKYMEKGI 588 >gi|296140382|ref|YP_003647625.1| DNA polymerase III subunit epsilon [Tsukamurella paurometabola DSM 20162] gi|296028516|gb|ADG79286.1| DNA polymerase III, epsilon subunit [Tsukamurella paurometabola DSM 20162] Length = 610 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 5/176 (2%) Query: 9 KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTG K D I EIGAV++ F + P R +P L GIT Sbjct: 22 FVVVDLETTGGSPKGGDAITEIGAVKVRGGEVLGE-FATLVDPE-RGIAPHITHLTGITT 79 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P+ +S+ F + Q A +AHNA+FD+GF+ A P + Sbjct: 80 AMVTGAPTIASVLPAFLE--FAQGAVLVAHNARFDIGFLKAAAAATGTPWPKPQTLCTVQ 137 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 R + H AL D+ DV ++ + Sbjct: 138 LARRVLTRDEAPSVKLSEMARLFRAETTPTHRALDDARATVDVLHGLIGRVGNLGI 193 >gi|241662069|ref|YP_002980429.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12D] gi|240864096|gb|ACS61757.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii 12D] Length = 216 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62 + D ETTGL+ + D I+ IGAV ++ + T+ ++ + P G Sbjct: 38 WVALDCETTGLNVRTDEIVSIGAVRIVGNRILTSERMELLIRPQGEMRPESICVH 92 >gi|288574409|ref|ZP_06392766.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570150|gb|EFC91707.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 193 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 3/141 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL ++ DRI+EIGA+ S+T +FQ F+ P GR EA+ +HGITDE Sbjct: 10 FVAIDVETTGLSNRWDRIVEIGAIRFTPGSET-ESFQTFVSP-GRPIPSEAVAIHGITDE 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P S F + + HN FD+GF++A ++ I Sbjct: 68 MVEGAPGLSEASIALASFLKD-EEPMVFHNPSFDLGFLDANMRAIKGSWNVMPVFDTCGL 126 Query: 129 IARRKHPSSRNDLNSLCKRYG 149 + L +L + +G Sbjct: 127 ARKAFPGIKGYSLVALARHFG 147 >gi|313124719|ref|YP_004034978.1| DNA polymerase iii polc-type [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281282|gb|ADQ62001.1| DNA polymerase III PolC-type [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 298 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 11/179 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGL + D +IEIG + + + T+R ++ + P + L GIT+E Sbjct: 12 YCVLDTETTGLSAYYDEVIEIGILRVRNGEITDR-YEQLIKPE-NEIDGFITSLTGITNE 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + DKP+ + S+ F + HN FDV F+ A + +DT+ Sbjct: 70 MVADKPAIEDVKSDVLAFLGS--DIIVGHNTSFDVRFLAAGFHEDIAN-----EYMDTMQ 122 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 AR+ +P + S ++H AL D ++Y M + G K Sbjct: 123 FARKLYPDLTHHRLS--DLSEYLYLTNNEHRALADCVTTEELYEAMKTEMIRKGLGIKD 179 >gi|257094696|ref|YP_003168337.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047220|gb|ACV36408.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 729 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 8/174 (4%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGL + D II+IGA +++ + F + P R S +++++HGIT E Sbjct: 541 VFDTETTGLQPSQGDEIIQIGATRIVNRRLLRHECFDQLIDP-RRPLSQQSIEVHGITRE 599 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L +P+ ++ +F F + + HNA FD+ F+ + ++ P LS Sbjct: 600 LLVGQPTIDTVLPQFQTFCAD--TVLVGHNAAFDMRFLQLKEKQTGVRFDQPVLDTLLLS 657 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 A + + L ++ +R G+++ R H AL D+ + +V++KM+ +++ Sbjct: 658 -AVLHPNQNSHRLEAIAERLGVSVFGR--HTALGDAMVTGEVFLKMLPLLAEMG 708 >gi|147814790|emb|CAN74413.1| hypothetical protein VITISV_042394 [Vitis vinifera] Length = 340 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 61/206 (29%), Gaps = 9/206 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD ETTGL NDRIIEIG +L N TFQ + P R + Sbjct: 137 IVFDTETTGLSRANDRIIEIGLQDLGGGE--NSTFQTLVNPE-RIVPNPHVHGITTYMVN 193 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124 D P + + + + W+AHN + + P+ Sbjct: 194 RPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPNWRF 253 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 R+ S + +LSDVY + + F Sbjct: 254 MDTLPLAREFIKSAGSDLPSGASLQALREYFRIPLVGPAHRVLSDVYT-LSQILQMLTFN 312 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDK 210 K + I+ K+ Sbjct: 313 LKVSVANLLDRSFTASDIINPKKKKN 338 >gi|332686699|ref|YP_004456473.1| DNA polymerase III subunit alpha [Melissococcus plutonius ATCC 35311] gi|332370708|dbj|BAK21664.1| DNA polymerase III alpha subunit [Melissococcus plutonius ATCC 35311] Length = 1450 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 72/198 (36%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P + +H Sbjct: 425 YVVFDVETTGLSAVYDTIIELSAVKMHKGNVI-DTFEQFINPG---HPLSQTTIHLTGIT 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S +N +AHNA FD+GF+N ++ + I Sbjct: 481 NEMVSDAKSEKVVLNMFKKFSENTILVAHNAAFDMGFLNTSYRKYKIPEAENPVIDTLEL 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN L K++G+ H A+ DS +I + + + + Sbjct: 541 ARYLYPTLKSHRLNVLAKKFGVG--LEQHHRAIYDSEATGHLCWIFLKETKEKFSMNYHD 598 Query: 188 NEDRFFKEEKKTVPNISL 205 + E Sbjct: 599 ELNMHIGEGDSYKRARPF 616 >gi|238060312|ref|ZP_04605021.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149] gi|237882123|gb|EEP70951.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149] Length = 604 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 67/206 (32%), Gaps = 4/206 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG I EIGAV++ + + P G P L GIT Sbjct: 52 FVVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITQA 109 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + F +F + A +AHNA +DVGF+ A R +P + Sbjct: 110 MLVPAPPIEQVLPSFLEFVAD--AVLVAHNAPYDVGFLKAACARHGYRWPNPRVLDTAAL 167 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R + + R H AL D+ DV ++ Sbjct: 168 ARRVLGRDEVPNRKLGTLASYFRTATRPTHRALDDAKATVDVLHGLIARLGGHRVDTVGE 227 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 F + T L P Sbjct: 228 AIEFARAVTPTQRRKRHLADGLPKVP 253 >gi|293553821|ref|ZP_06674436.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1039] gi|291602027|gb|EFF32264.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1039] Length = 929 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L I Sbjct: 64 RVQKAPYFEDVAQTIYNLLAD--TIFVAHNIYFDYNFLNHELMRCGLPSLKIPGIDTVEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184 L L + G + H A D+ + + + + M I Sbjct: 122 AQIFLPTEPSFRLADLSESLGFIH--ENPHQADSDAEVTGQLLLLIEERMRKLPIITLE 178 >gi|261417986|ref|YP_003251668.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Geobacillus sp. Y412MC61] gi|319767201|ref|YP_004132702.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y412MC52] gi|261374443|gb|ACX77186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y412MC61] gi|317112067|gb|ADU94559.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y412MC52] Length = 909 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 7/177 (3%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++ D+ETTG K DRII++G + D R F F P + +L I Sbjct: 4 RFVIIDLETTGNGPKKGDRIIQLGMAVVEDGLIVER-FASFFNPE-QPIPLFIQQLTNIN 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ ++ P F+ E + AHN FD+ F+ AEL+R P I Sbjct: 62 EQMVEGAPLFADKAGEIAALMHGAYFV--AHNVDFDLPFLQAELERAGWPPFAGPTIDTV 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L ++ G+ H A D+ + + ++I ++ S++ Sbjct: 120 ELARIVLPTAESYKLGDLARQLGLRHDRP--HQADSDAEVTAKLFIALLKRLSRLPL 174 >gi|154492230|ref|ZP_02031856.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC 43184] gi|154087455|gb|EDN86500.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC 43184] Length = 256 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 70/206 (33%), Gaps = 8/206 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG++ DRI+EI V++ + + ++T + P PE+ +HGITDE Sbjct: 10 VFFDLETTGINIVKDRIVEISFVKVYPNGKEESKT--RRINPE-MPIPPESTAIHGITDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P+F I + N L+ L+ + +D + Sbjct: 67 DVKDCPTFKEIAKSLAAQIEGCDLAGYNSNRFDIPLLAEEFLRAGVDIDLNKRKFVDVQT 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + + ++ S + H A D+ +V + ++ Sbjct: 127 IFHK----MEQRTLAAAYKFYCDKSLENAHTAEADTMATYEVLKAQLDRYPELQNDINFL 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 + Sbjct: 183 SQYSSYTNNVDFAGRMVYNDKGEEVI 208 >gi|116492651|ref|YP_804386.1| DNA polymerase III PolC [Pediococcus pentosaceus ATCC 25745] gi|122265885|sp|Q03FS8|DPO3_PEDPA RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116102801|gb|ABJ67944.1| DNA polymerase III catalytic subunit, PolC type [Pediococcus pentosaceus ATCC 25745] Length = 1437 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 73/190 (38%), Gaps = 5/190 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++FD+ETTGL + D++IE+ AV++ + + ++ F+ F+ P ++ + Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDQ-FEEFIDPG---FPLSETTINLTSI 474 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + S S ++A + HN FD+GF+N R + + I Sbjct: 475 TDEMVRGSMSEKEVFTKFREFYEDAIIVGHNVTFDIGFMNTGYLRHGMEEIKNPIIDTLT 534 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 LN+L K++G+ + H Y+ + + + Sbjct: 535 LARFLYPTLKGYRLNTLAKKFGVALEHH-HRAIYDSETTGHLCYLFLKDAEERYGIEYHD 593 Query: 188 NEDRFFKEEK 197 + E + Sbjct: 594 QLNDHMTENE 603 >gi|184155667|ref|YP_001844007.1| helicase [Lactobacillus fermentum IFO 3956] gi|183227011|dbj|BAG27527.1| helicase [Lactobacillus fermentum IFO 3956] Length = 943 Score = 69.6 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 76/226 (33%), Gaps = 12/226 (5%) Query: 1 MIRKNKMR---KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 M +K + R V D+ETTG K RII+IG V + D F+ + P Sbjct: 1 MAKKKR-RGPVYAVVDLETTGTSVKTGSRIIQIGCVLVQDGQVI-NEFETKINP-RTVVP 57 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 +L GI + +KD P F + ++ N F E Sbjct: 58 LTIEQLTGIKNNDVKDAPLFEDVAPTLKSLLDDTIFVAHNVNFDFPFLNAEFERAGEAPL 117 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM- 175 + + I PS R + + I H H A+ D+ + + I+++ Sbjct: 118 TIPAIDTVTLSQILMPTAPSFRLRDLTSY----LAIDHDQPHSAVSDAVATAHLLIELLK 173 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 ++ D +KT + + + KEEL Sbjct: 174 RLADLPTITLQSIVDLQLTLPQKTAWLFERELAKRAVEPQPLKEEL 219 >gi|296110428|ref|YP_003620809.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc kimchii IMSNU 11154] gi|295831959|gb|ADG39840.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc kimchii IMSNU 11154] Length = 1437 Score = 69.6 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 6/169 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL + D+IIE+ AV++ + + F ++ P G S KL ITD Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVKMQLGNVIEK-FSEYINP-GFPLSDFTTKLTSITDT 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +I + F + + A I HN FD+GF+NA R N+ + I Sbjct: 477 MVAHADTEENIITRFRKWIGD--AVLIGHNVTFDIGFMNAAYARYNQTVIKNPVIDTLPF 534 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L +L KR+ I+ H A+ D+ + +++ Sbjct: 535 TRWLYPDYKSYRLGTLAKRFN--INLEQAHRAIFDAETTGHIAWRLIKE 581 >gi|291300433|ref|YP_003511711.1| exonuclease RNase T and DNA polymerase III [Stackebrandtia nassauensis DSM 44728] gi|290569653|gb|ADD42618.1| Exonuclease RNase T and DNA polymerase III [Stackebrandtia nassauensis DSM 44728] Length = 410 Score = 69.6 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 93/256 (36%), Gaps = 29/256 (11%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 VFD ETTG+ + RIIEI V D T+ L P +HGI Sbjct: 2 YAVFDTETTGIIPGMHHRIIEIAVVLADDEGSIENTWSTLLNP---DRDLGPQHIHGIKA 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDT 126 + D P F I + + +AHN FD+ F++AE +R+ + T Sbjct: 59 RQVIDAPKFGDIAGQLIQMLSG--RTLVAHNLPFDLRFLSAEFERLGHQLTYNHHLGVCT 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS-QINFGF 185 ++ + + L CK G+ H AL D+ + + + + + Sbjct: 117 MNWSTTFLEGASRSLPECCKAAGVQ--LTGWHSALSDAEATAALLKHYINAARGGVPWHD 174 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP----------------LFTRITKEELDEHDKTIQ 229 + R V N + +R+ R+ E+ D + Sbjct: 175 RLPLSRSCTWPTVPVTNAHVRQRESVPHKPSHGDPFISALVDYLPRVQSSEVS--DPYLA 232 Query: 230 TLGKNAIWDRYISSNQ 245 L + A+ DRY+S+++ Sbjct: 233 VLDE-ALSDRYLSADE 247 >gi|306845957|ref|ZP_07478524.1| DNA polymerase III, epsilon chain [Brucella sp. BO1] gi|306273592|gb|EFM55437.1| DNA polymerase III, epsilon chain [Brucella sp. BO1] Length = 235 Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 7/218 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGDELLTQSLYLIFDP-RKDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 IHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDIHYIQREFRKAEVDMLDQP 125 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + C +HGAL D++L + +Y+ + Sbjct: 126 VYCTMEGARRLW--RGDSAKLDHCLAKIGLARTGYRHGALEDAYLTAGLYLHQQGVAKPL 183 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + K + L R P T + Sbjct: 184 PKINSWQPPKNLKPYPE--RPAGELPRRTPKRKNATAK 219 >gi|295703510|ref|YP_003596585.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium DSM 319] gi|294801169|gb|ADF38235.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus megaterium DSM 319] Length = 933 Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 3/87 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D+ETTG K D++I+ AV + D R F FL P G P +L I Sbjct: 4 RFVVVDLETTGHSPKQGDKMIQFAAVIVEDGKIVER-FSSFLNP-GMDIPPFITQLTNIQ 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAE 93 ++ +K P F I + + ++ Sbjct: 62 NDMVKGAPLFEEISPKIIELLDDAYFV 88 >gi|197337514|ref|YP_002157585.1| DNA polymerase III epsilon subunit [Vibrio fischeri MJ11] gi|197314766|gb|ACH64215.1| DNA polymerase III epsilon subunit [Vibrio fischeri MJ11] Length = 212 Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 5/97 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L + +R FQ + P G + S GI++ Sbjct: 16 VVLDFETTGLSPNQGDRAIEIGAVKLENGVVVDR-FQGLMNP-GFRVSSFIENYTGISNR 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 L D S + +EF +F N +AHNA FD F Sbjct: 74 MLADAASCDEVMNEFANFIQGCN--LVAHNASFDKRF 108 >gi|154246367|ref|YP_001417325.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus Py2] gi|154160452|gb|ABS67668.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus Py2] Length = 719 Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 8/175 (4%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGLD D I++IGA +++ + F + P R + +HGI E Sbjct: 531 VFDTETTGLDPAGGDEILQIGATRIVNGRLLASECFDQLVDPQ-RSIPEAGIAVHGIRPE 589 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ KP+ + F + + HN FD+ F+ + P L+ Sbjct: 590 MVRGKPTLPQVLPAFHA--FAADTVLVGHNVAFDMRFLTLKENASGVRFDQPVLDTLLLA 647 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 S + + I+ +H AL D+ +++++K++ Q Sbjct: 648 AIVHPGEDSHGLEAMAAR---LGIAVSGRHTALGDALATAEIFLKLLPLLRQRGI 699 >gi|294498159|ref|YP_003561859.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium QM B1551] gi|294348096|gb|ADE68425.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus megaterium QM B1551] Length = 933 Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D+ETTG K D++I+ AV + D R F FL P G P +L I Sbjct: 4 RFVVVDLETTGHSPKQGDKMIQFAAVIVEDGKIVER-FSSFLNP-GMDIPPFITQLTNIQ 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAE 93 ++ +KD P F I + + ++ Sbjct: 62 NDMVKDAPLFEEISPKIIELLDDAYFV 88 >gi|320011539|gb|ADW06389.1| DNA polymerase III, epsilon subunit [Streptomyces flavogriseus ATCC 33331] Length = 346 Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 75/202 (37%), Gaps = 8/202 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + P P + +HG+T + Sbjct: 32 YAVVDVETTGL-ARDDRIISAAVYRLDARGDVEDHWYTLVNPER---DPGPVWIHGLTSD 87 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + +E + +AHNA FD I E R R+ Sbjct: 88 VLEGAPLFPQVAAELSERLAG--RVLVAHNAAFDWSMIAREYARAAVTAPVEQRLCTIAL 145 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + P + L SL +G+ H H AL D+ +L++ + + ++ Sbjct: 146 AKELRLPLPNHKLESLAAHFGVVQQHA--HHALDDARVLAEAFRPSLHAAAKGGVRLPLL 203 Query: 189 EDRFFKEEKKTVPNISLLKRDK 210 E R E + R Sbjct: 204 ECRPLTEWYDSPVTPRAGYRPS 225 >gi|255070749|ref|XP_002507456.1| exonuclease and DNA helicase [Micromonas sp. RCC299] gi|226522731|gb|ACO68714.1| exonuclease and DNA helicase [Micromonas sp. RCC299] Length = 1473 Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--D 67 +VFD+ETTGL+ +RIIEI AV + D T++ + P P + L GIT Sbjct: 296 VVFDLETTGLNKDRNRIIEIAAVNVSD--PTHQPMSTLVNPGRFAVPPPVVALTGITNAM 353 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96 PSF F ++ +E Sbjct: 354 VSAPAVPSFQRAAELFQEYIDEARRRCGG 382 >gi|15614981|ref|NP_243284.1| DNA polymerase III PolC [Bacillus halodurans C-125] gi|13959348|sp|Q9KA72|DPO3_BACHD RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|10175038|dbj|BAB06137.1| DNA polymerase III (alpha subunit) [Bacillus halodurans C-125] Length = 1433 Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++IIE+ AV++ + +R F+ F P+ + ++L GITD+ Sbjct: 419 FVVFDVETTGLSAVYNKIIELAAVKVKNGEIIDR-FERFADPH-EPLTNTIIELTGITDD 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK +P + +EF F + A +AHNA FD+GF+N Q++ I Sbjct: 477 MLKGQPEVEQVLNEFHAFIGD--AVLVAHNASFDMGFLNTGFQKMGLGEAKNPVIDTLEL 534 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK++ I S H A+ D+ + +M+ ++ + + Sbjct: 535 GRFLYPTLKNHRLNTLCKKF--DIELVSHHRAIYDAEATGHLLWRMVKDATERDILYHDQ 592 Query: 189 EDRFFKEEKKTVPNIS 204 + E S Sbjct: 593 LNDNMGEGNFHRQRPS 608 >gi|297161567|gb|ADI11279.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis BCW-1] Length = 324 Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 46/209 (22%), Positives = 75/209 (35%), Gaps = 8/209 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ +L + + P P + +HG+T + Sbjct: 22 YAVVDVETTGL-ARDDRIVSAAVYQLDARGAVQDHWYTLVNPQR---DPGPVWIHGLTSD 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P FS I E + +AHNA FD + E R R+ Sbjct: 78 TLADAPLFSEIADELAQHLDG--RVLVAHNAVFDWSMLAREYARAGSAAPVRQRLCTIAL 135 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 P + L SL YG+ H AL D+ +L++ + + + Sbjct: 136 SKELGLPLPNHKLESLAAHYGVV--QERAHHALDDARVLAETFRPSLHAAAAGGLRLPLL 193 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + E I + + R + Sbjct: 194 ACQPLTEWSDAPRPIGYQRSYRATSWRAS 222 >gi|291563198|emb|CBL42014.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing bacterium SS3/4] Length = 1376 Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 +VFDIETTG ++IIEIGAV++ + +R F+ P Sbjct: 415 YVVFDIETTGFSPIKNKIIEIGAVKVRNGEIIDRM-DEFVNPE 456 >gi|23099217|ref|NP_692683.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Oceanobacillus iheyensis HTE831] gi|22777446|dbj|BAC13718.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831] Length = 939 Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 7/178 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D+ETTG KND+IIEIG V + T F P G+ P L GI+ Sbjct: 3 RFVVIDLETTGHAPSKNDKIIEIGMVIIEGDEII-DTKTTFFNP-GQPIPPFITNLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ + D P F+ + AHN FD+GF+NAEL+ D L + Sbjct: 61 DDDVADAPLFTEKALSIKSILEDSYII--AHNVNFDLGFLNAELKENGIDRLHNQVLDTV 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + L+ L + + H AL D+++ + ++ K+M +Q+ + Sbjct: 119 ELSRILFPTAPGYKLSQLSDHFNLQH--DDPHRALSDAYVTAKLFQKLMDKINQLPYE 174 >gi|298244072|ref|ZP_06967878.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] gi|297551553|gb|EFH85418.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] Length = 1009 Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 72/188 (38%), Gaps = 11/188 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K+ +R I D+ETTGL ++ D I+E+ A++ S+ TF+ F+ P GR Sbjct: 1 MAKKSAIR-IALDLETTGLHAEQDAILEVAAIKF-QGSEVLDTFETFISP-GRSIPYRVQ 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GI E L P F D + Q ++ Sbjct: 58 RLTGIKPELLVGAPPF--------DAISRQLHTFLGDYPIVGHSIPFDVGFLRRWGLAHS 109 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + ++DT +A PS + +H A++D+ L V++ + Sbjct: 110 NPMVDTFELATVLLPSLSSYNLGQVAHSLGIQVPSDRHRAMVDTVLAMQVFLSLYERLQT 169 Query: 181 INFGFKTN 188 ++ + Sbjct: 170 VDLALLQD 177 >gi|260663059|ref|ZP_05863952.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus fermentum 28-3-CHN] gi|260552680|gb|EEX25680.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus fermentum 28-3-CHN] Length = 946 Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 71/215 (33%), Gaps = 8/215 (3%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K RII+IG V + D F+ + P +L GI + Sbjct: 14 YAVVDLETTGTSVKTGSRIIQIGCVLVQDGQVI-NEFETKINP-RTVVPLTIEQLTGIKN 71 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +KD P F + ++ N F E + + Sbjct: 72 NDVKDAPLFEDVAPTLKSLLDDTIFVAHNVNFDFPFLNAEFERAGEAPLTIPAIDTVTLS 131 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGFK 186 I PS R + + I H H A+ D+ + + I+++ + Sbjct: 132 QILMPTAPSFRLRDLTSY----LAIDHDQPHSAVSDAVATAHLLIELLKRLADLPTITLQ 187 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 + D +KT + + + KEEL Sbjct: 188 SIVDLQLTLPQKTAWLFERELAKRAVEPQPLKEEL 222 >gi|281419997|ref|ZP_06250996.1| exonuclease [Prevotella copri DSM 18205] gi|281405797|gb|EFB36477.1| exonuclease [Prevotella copri DSM 18205] Length = 287 Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 79/213 (37%), Gaps = 6/213 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGLD DRII+I ++++ +R +++ P + E + L GI++E Sbjct: 10 IVFDLETTGLDMIKDRIIQISYIKVMPDGTEDRK-NLYVNP-CMEIPAEVVALTGISNED 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P+F + + F + N L+ + R+ID +I Sbjct: 68 VKDAPTFKQLAATLEKEFTGCDFAGYNSNHFDVPMLAEEFLRAGIDFDFNKCRLIDAQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + ++ A Y +M + G + Sbjct: 128 FMK----MERRNLAAAYKFYCGRKMEEDFEAHRADQDTEATYRVLMGELDKYAPGVQDEP 183 Query: 190 DRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222 +R + + S K + RI EE+ Sbjct: 184 ERVLNNNMDELADFSKQKDNVDFAGRIVWEEVK 216 >gi|114773251|ref|ZP_01450486.1| hypothetical protein OM2255_00307 [alpha proteobacterium HTCC2255] gi|114546370|gb|EAU49279.1| hypothetical protein OM2255_00307 [alpha proteobacterium HTCC2255] Length = 313 Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Query: 5 NKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N M+ +V DIETTG + + +I EIG V++++ + +Q L P R+ L Sbjct: 137 NPMQPYVVVDIETTGGRATSHKITEIGMVKVINGQVVDE-YQTLLNPK-RRIPRNITALT 194 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 GI D + + P F+ + E + ++AHN FD GFI E Sbjct: 195 GIDDVMVSNAPIFAEVADEVAQ--FTKGCVFVAHNVNFDYGFIKQEF 239 >gi|295689870|ref|YP_003593563.1| exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC 21756] gi|295431773|gb|ADG10945.1| Exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC 21756] Length = 298 Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 72/241 (29%), Gaps = 33/241 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL---DYSK--TNRTFQVFLCPNGRKNSPEALKLHG 64 IV D+ETTGLD D IIE G V F P+G P+ KL G Sbjct: 45 IVLDLETTGLDPAKDEIIEFGLVPFTYDAGGRIVAVGEPFSRLRQPSG-PIPPDVTKLTG 103 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 +TD + + + F + A IAHNA FD F A + P Sbjct: 104 LTDAMVAGQ----VVDPAEVATFIDGAALIIAHNAGFDRRFAEAFCPAFAQKPW------ 153 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV------------YI 172 S + + ++ L H A D ++ + Sbjct: 154 -ACSYTQIDWQAHGHESGKLAFLACAYGFFHDGHRAHHDCLATLEILASPLGATDGSAFQ 212 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNIS----LLKRDKPLFTRITKEELDEHDKTI 228 ++ + + F ++ + + + + + D + Sbjct: 213 TLLATARRASVRIWAENSPFDLKDVLKARGYRWSGDPGPSPRAWWIDVDEADKDAELAFL 272 Query: 229 Q 229 Q Sbjct: 273 Q 273 >gi|254000498|ref|YP_003052561.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4] gi|253987177|gb|ACT52034.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4] Length = 470 Score = 69.2 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 7/163 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG DRI EI + + + +R +Q + P P +L GI D Sbjct: 5 YVLLDLETTGATPLVDRITEIALIRFENGQEVSR-WQTLVNPETA-IPPFIQRLTGIDDG 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F + E + A AHN +FD GF+ E +RI D +++ T+ Sbjct: 63 MVATAPRFREVAGELLNHLEG--AVLCAHNVRFDHGFLKNEFKRIGID--LRQKVLCTVK 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ++R+ +P R+ ++H A+ D L D Sbjct: 119 LSRKLYPQHRSHSLDSIIERHSLQC-GARHRAMGDVVALVDFL 160 >gi|257065507|ref|YP_003145179.1| exonuclease, DNA polymerase III, epsilon subunit family [Slackia heliotrinireducens DSM 20476] gi|256793160|gb|ACV23830.1| exonuclease, DNA polymerase III, epsilon subunit family [Slackia heliotrinireducens DSM 20476] Length = 986 Score = 69.2 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 12/185 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ +N +V D ETTGL +D + +I A + T F F+ P G+ E + Sbjct: 1 MLDRN---LVVLDTETTGLSYNHDELTQIAAARMECGEIT-DWFVTFVNP-GKPIPDEIV 55 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L I DE + D P+ + +F + AHNA FD + + + + L+ Sbjct: 56 RLTNIHDEDVVDAPTPDEARALLAEFIGDAYVV--AHNADFDK---HFCTKSESGECLNR 110 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +D+L++AR P ++ L + S H A D L VY ++ + Sbjct: 111 NIWVDSLALARIALPRMKSHR--LIDLVHAFDAPISTHRADADVEALCAVYRILLSAVAT 168 Query: 181 INFGF 185 + Sbjct: 169 MPPDL 173 >gi|294673575|ref|YP_003574191.1| DNA polymerase III subunit epsilon [Prevotella ruminicola 23] gi|294472509|gb|ADE81898.1| putative DNA polymerase III, epsilon subunit [Prevotella ruminicola 23] Length = 285 Score = 69.2 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 73/202 (36%), Gaps = 10/202 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL--LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++FD+ETTGLD DRII+I +++ + + + P + P +L GI++ Sbjct: 10 VIFDLETTGLDLVKDRIIQISYIKVYPDGHEERGNE---LVNPE-KPIEPMITQLTGISN 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +KDKP+F + + + F + N L+ ++ID Sbjct: 66 DDVKDKPTFKQLGAVLAEKFTGCDFAGFNSNHFDIPLLAEEFLRAGVDFDFSKCKMIDAQ 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +I + + ++ A Y +M + G Sbjct: 126 TIFHK----MERRNLAAAYKFYCGRKMEEDFEAHRADQDTEATYRVLMGELDKYAPGANE 181 Query: 188 NEDRFFKEEKKTVPNISLLKRD 209 + ++ + + + S + + Sbjct: 182 DPEKVLENDMNKLAEFSRVNNN 203 >gi|148543926|ref|YP_001271296.1| DNA polymerase III PolC [Lactobacillus reuteri DSM 20016] gi|184153322|ref|YP_001841663.1| DNA polymerase III PolC [Lactobacillus reuteri JCM 1112] gi|227364835|ref|ZP_03848882.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3] gi|325682539|ref|ZP_08162056.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A] gi|166918295|sp|A5VJD5|DPO3_LACRD RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|148530960|gb|ABQ82959.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus reuteri DSM 20016] gi|183224666|dbj|BAG25183.1| DNA polymerase III alpha subunit [Lactobacillus reuteri JCM 1112] gi|227070098|gb|EEI08474.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3] gi|324978378|gb|EGC15328.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A] Length = 1443 Score = 69.2 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 78/198 (39%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL + D++IE+ AV++ D + R F F+ P G S + L IT E Sbjct: 426 YVIFDVETTGLSAIYDKVIELSAVKMQDGNVLER-FDEFIDP-GFPLSEQTTNLTSITTE 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + +F F DF HN FD+GF+N +R + I Sbjct: 484 MVQGSKTEEEVFQMFKDFCKG--CIIAGHNVSFDMGFMNTGYERHQMGKIAEPVIDTLPL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 LN+L K++ + + H H A DS + K + + Sbjct: 542 ARFLYPDMRGYRLNTLSKKFKVALEH--HHRANYDSEATGHLLYKFLKDAEARYDVKYVD 599 Query: 189 EDRFFKEEKKTVPNISLL 206 + EE + Sbjct: 600 DLNKHMEENNAYRHARPF 617 >gi|325852036|ref|ZP_08171119.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A] gi|325484592|gb|EGC87508.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A] Length = 896 Score = 69.2 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 3/120 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGIT 66 IVFD ETTGLD D IIEI A+ + +++ P K + ++ I Sbjct: 515 IVFDTETTGLDVFTDDIIEIAAMRIRGGEIVGEPLDLYIETGKPILPKLGDKENPMYAIY 574 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + + + + HNA +D ++ L+R D + Sbjct: 575 HEKMAAGELLAPAEALCRFLAYIGTYPILGHNASYDYNILDNCLRRYCNDTMQAHGNRCF 634 >gi|170016990|ref|YP_001727909.1| DNA polymerase III, alpha subunit [Leuconostoc citreum KM20] gi|169803847|gb|ACA82465.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc citreum KM20] Length = 1437 Score = 69.2 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 6/173 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL + D+IIE+ AV++ + ++ F ++ P G S +L ITD Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVKMQMGNVIDK-FSEYINP-GFPLSDFTTELTSITDA 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + SI S F + + A + HN FD+GF+NA R N+ + I Sbjct: 477 MVANADTEESIVSRFRAWVRD--AILVGHNVTFDIGFMNAAYSRYNQPDISNPIIDTLPF 534 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L ++ KR+ I+ H A+ DS + +++ + Sbjct: 535 TRWLYPDYKSYRLGTIAKRFN--INLEQAHRAIFDSETTGHIAWRLIKEANTT 585 >gi|182419729|ref|ZP_02950970.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum 5521] gi|237665534|ref|ZP_04525522.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376466|gb|EDT74047.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum 5521] gi|237658481|gb|EEP56033.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1472 Score = 69.2 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 83/206 (40%), Gaps = 7/206 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG K ++I EIG +++ D ++ F F+ P + P +++ ITD+ Sbjct: 446 YCVLDLETTGFSPKLEKITEIGIMKVKDGKVIDK-FSTFVNPE-KPIPPRVVEVTNITDD 503 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ + +F + +F + +AHNA+FD+GF+ + + D +L+ Sbjct: 504 MVRNAETIDKVFPKMLEFIEG--SILVAHNAEFDIGFLRHYAKVLGHDFDFTYLDTLSLA 561 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + I H AL D V+ M+ + ++ Sbjct: 562 QDLFPQYKSYKL---GRIAKNLGIKVEVAHRALDDVDTTVKVFNVMIDMLKERGAKTLSD 618 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 + + +E+ L+ + Sbjct: 619 IETYACDEESKKVQYKKLRTHHAIIL 644 >gi|28378678|ref|NP_785570.1| DNA polymerase III PolC [Lactobacillus plantarum WCFS1] gi|254556876|ref|YP_003063293.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1] gi|300768189|ref|ZP_07078094.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180817|ref|YP_003924945.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ST-III] gi|32469698|sp|Q88VK2|DPO3_LACPL RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|28271514|emb|CAD64419.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Lactobacillus plantarum WCFS1] gi|254045803|gb|ACT62596.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1] gi|300494253|gb|EFK29416.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046308|gb|ADN98851.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ST-III] Length = 1437 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD ETTGL + DR+IE+ AV+++ + ++ F+ F+ P G S L ITD+ Sbjct: 422 YVIFDTETTGLSAIYDRVIELSAVKMVKGNVVDQ-FEEFIDP-GFHLSETTTNLTSITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ S +F F +F+ + A + HN FD+GF+N R + P+ I Sbjct: 480 MVRGSKSEEEVFKLFREFYGD--AIVVGHNVTFDIGFMNTGYARHHMGPITNPIIDTLTL 537 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 LN+L K++ + + H H A+ D+ + + + Sbjct: 538 ARWLYPNLRGYRLNTLAKKFNVNLEH--HHRAIYDAETTGHLNHLFLKDAEDRYQVQFHD 595 Query: 189 EDRFFKEEKKTVPNISLL 206 + E + Sbjct: 596 QLNDHMNENAAYRHARPF 613 >gi|271964195|ref|YP_003338391.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270507370|gb|ACZ85648.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 574 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 69/174 (39%), Gaps = 5/174 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG+ + I EIGAV++ F + P G P L GITD Sbjct: 21 FVVFDLETTGVSAGEHAITEIGAVKVRGGEVLGE-FGTLVDP-GSPIPPFISVLTGITDT 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P S+ F + + +AHNA FD+GFI A ++DT+ Sbjct: 79 MVVAAPKIESVLPSFLE--FAEGTTLVAHNAGFDLGFIKAACAAHGYP-PPAHPVVDTVV 135 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +AR+ L I +H AL D+ DV ++ Sbjct: 136 LARKLLTRDEAPNCKLSTLARIFSKTEPRHRALADAQATVDVLHALLERAGSFG 189 >gi|299821667|ref|ZP_07053555.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601] gi|299817332|gb|EFI84568.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601] Length = 929 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 91/236 (38%), Gaps = 10/236 (4%) Query: 2 IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 +++ + R +V D+ETTG + ++DRII+ A + + T+ F+ P R+ P Sbjct: 1 MKRKEKRYLVVDLETTGNQANRHDRIIQFAATLVEGSKRL-ETYSTFINPE-REIPPFIQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GI D P F+ + + + ++AHN FD F+ E+QR Sbjct: 59 QLTGIKPSDCYDAPIFTDVAPIIQNLLED--CIFVAHNVSFDWTFLAREMQRAGYPLPKT 116 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ L L + + H A D+ + +D+ + ++ Sbjct: 117 KKLDTVELARIIYPGIDSYKLQDLSDEFKLGHDRP--HQADSDAEVTADLLLLLLDKLEN 174 Query: 181 INFGFKTNEDRFFKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + + K +P + L+ K + +EL E+ + + K Sbjct: 175 LPLPVIRKMATISQSLKNYLPELLFELEMQKDRELKALPDELMEYRGLV--IRKKP 228 >gi|288904428|ref|YP_003429649.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus UCN34] gi|306830461|ref|ZP_07463631.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977425|ref|YP_004287141.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731153|emb|CBI12701.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus UCN34] gi|304427486|gb|EFM30588.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177353|emb|CBZ47397.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 1464 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD Sbjct: 426 YVVFDVETTGLSAVNNELIQIAASKMYKGNIV-EQFDEFINP-GHHLSAFTTELTGITDN 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ + F DF + +AHNA FDVGF+NA +R + I Sbjct: 484 HVRNAKPIEEVLQMFQDFCQD--TVLVAHNATFDVGFMNANYERHGMPIITQPVIDTLEF 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 542 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEARE 591 >gi|227514853|ref|ZP_03944902.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum ATCC 14931] gi|227086785|gb|EEI22097.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum ATCC 14931] Length = 946 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 70/215 (32%), Gaps = 8/215 (3%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K RII+IG V + D F+ + P +L GI + Sbjct: 14 YAVVDLETTGTSVKTGSRIIQIGCVLVQDGQVI-NEFETKINP-RTVVPLTIEQLTGIKN 71 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +K P F + ++ N F E + + Sbjct: 72 NDVKGAPLFEDVAPTLKSLLDDTIFVAHNVNFDFPFLNAEFERAGEAPLTIPAIDTVTLS 131 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGFK 186 I PS R + + I H H A+ D+ + + I+++ + Sbjct: 132 QILMPTAPSFRLRDLTSY----LAIDHDQPHSAVSDAVATAHLLIELLKRLADLPTITLQ 187 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 + D +KT + + + KEEL Sbjct: 188 SIVDLQLTLPQKTAWLFERELAKRAVEPQPLKEEL 222 >gi|294628658|ref|ZP_06707218.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] gi|292831991|gb|EFF90340.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] Length = 328 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 8/163 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + + P P + +HG+T E Sbjct: 23 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPER---DPGPVWIHGLTSE 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ I EF + +AHNA FD I E R ++ R+ Sbjct: 79 ALEGAPLFTDIAEEFAARLAD--RVLVAHNAVFDWQMIAREYARARREAPVRQRLCTIAL 136 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P + L SL +G+ H AL D+ +L++ + Sbjct: 137 SKELGLPLPNHKLESLAAHFGVVQRRA--HHALDDARVLAEAF 177 >gi|229544028|ref|ZP_04433087.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans 36D1] gi|229325167|gb|EEN90843.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans 36D1] Length = 930 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 7/171 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D+ETTG + K DRII+ AV +++ + F F+ P + P +L GI Sbjct: 3 RYVVVDLETTGNSAKKGDRIIQFSAV-VVEGREIKTQFTSFVNPE-KPVPPFISELTGID 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + L++ P FS I + + + ++AHN FD+ F+ EL+ P + Sbjct: 61 NGMLEEAPVFSEIAPRIMEILED--SIFVAHNVLFDLPFLQQELKAAGFPPFRGPSLDTV 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + L L ++ H H A D+ + + + + M Sbjct: 119 EFSRIAFPTLNSYKLGDLADSL--SLYHERPHRADSDAFVTAKLLLACMEK 167 >gi|194467743|ref|ZP_03073729.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23] gi|194452596|gb|EDX41494.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23] Length = 1443 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 78/198 (39%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL + D++IE+ AV++ D + R F F+ P G S + L IT E Sbjct: 426 YVIFDVETTGLSAIYDKVIELSAVKMQDGNVLER-FDEFIDP-GFPLSEQTTNLTSITTE 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + +F F DF HN FD+GF+N +R + I Sbjct: 484 MVQGSKTEEEVFQMFKDFCKG--CIIAGHNVAFDMGFMNTGYERHQMGKIAEPVIDTLPL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 LN+L K++ + + H H A DS + K + + Sbjct: 542 ARFLYPDMRGYRLNTLSKKFKVALEH--HHRANYDSEATGHLLYKFLKDAEARYDVKYVD 599 Query: 189 EDRFFKEEKKTVPNISLL 206 + EE + Sbjct: 600 DLNKHMEENNAYRHARPF 617 >gi|312869005|ref|ZP_07729182.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus oris PB013-T2-3] gi|311095431|gb|EFQ53698.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus oris PB013-T2-3] Length = 1444 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 79/198 (39%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL + D++IE+ AV++ + R F F+ P G S + L ITDE Sbjct: 423 YVIFDVETTGLSAIYDKVIELSAVKMKNGEVLAR-FDEFIDP-GFPLSEQTTNLTSITDE 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + +F F DF HN FD+GF+N +R + + I Sbjct: 481 MVRGSKTEEEVFKMFKDFCQG--TIIAGHNVSFDMGFMNTGYRRHQMEEITEPVIDTLPL 538 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 LN+L K++ + + H H A D+ + K + + + Sbjct: 539 ARFLYPNMRGYRLNTLSKKFKVALEH--HHRANYDAEATGHLLYKFLKDAEKRYEIRYVD 596 Query: 189 EDRFFKEEKKTVPNISLL 206 + E + Sbjct: 597 DLNQHMAENDAYKHARPF 614 >gi|291280248|ref|YP_003497083.1| hypothetical protein DEFDS_1873 [Deferribacter desulfuricans SSM1] gi|290754950|dbj|BAI81327.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 200 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 8/184 (4%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D ETTGL K R++EI AV L + + +R F + P + +A K+H I+D Sbjct: 14 VVDTETTGLSPYKGARLVEIAAVRLDEGLNIRLDRGFSTLINPK-KPIPFQAYKIHKISD 72 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +KD P+ + F + +N ++AHNA FD FI+ ++ + + I Sbjct: 73 EMVKDAPTIEEVLPHFSKYV--ENTVFVAHNAPFDFKFIDYFYKKTGMNCPLIAVIDTLK 130 Query: 128 SIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 R L+SL + + I I+ +H A+ D+ + ++ K++ SQ Sbjct: 131 LSRRIIPGLKSYSLDSLIQHFNIKLKINGSYRHRAIYDALHTAIIFKKLIEIESQRKGSL 190 Query: 186 KTNE 189 ++ Sbjct: 191 LLSD 194 >gi|327405996|ref|YP_004346834.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823] gi|327321504|gb|AEA45996.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM 16823] Length = 458 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 83/240 (34%), Gaps = 16/240 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + DIETTG +K+ +I EI + D K +F + P +L GI Sbjct: 1 MNYAIVDIETTGGSTKSSKITEIAIYK-HDGMKIIDSFDTLVNPE-MPIPEFISRLTGIH 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ----RINKDPLDPSR 122 D+ +++ P F I + + ++ ++AHN FD G I E + K L R Sbjct: 59 DDMVENAPKFYEIAKQIIE--FTEDCIFVAHNVGFDYGIIRHEFKLLGYDYRKAHLCTVR 116 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + + + + G + LL K + Q Sbjct: 117 ASRYVIPDHESYSLGKLTKALGIQLIGRHRAKGDAEATAHLFTLLHTTDSKGLQTFIQEE 176 Query: 183 FG---FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE-----LDEHDKTIQTLGKN 234 N D EE P I D I K + +++H K ++TL + Sbjct: 177 INPKILHPNLDLETLEEIPNKPGIYKFYNDTNQLIYIGKSKHIKKRIEQHLKNVKTLKGS 236 >gi|269794889|ref|YP_003314344.1| exonuclease, DNA polymerase III subunit epsilon family [Sanguibacter keddieii DSM 10542] gi|269097074|gb|ACZ21510.1| exonuclease, DNA polymerase III, epsilon subunit family [Sanguibacter keddieii DSM 10542] Length = 616 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 67/198 (33%), Gaps = 4/198 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG SK+ I EIGAV++ FQ + P G +L GIT Sbjct: 62 FVVVDLETTGGSSKDAGITEIGAVKVRGGEVIGE-FQSLVNP-GHPVPAFIARLTGITTL 119 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + PS + F + + +AHNA FD+ F+ A + ++ + Sbjct: 120 MVSSAPSIELVLPSFLE--FARGTVLVAHNAPFDISFLKAAARSMDLAWPGNQVLDTVPL 177 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R + + H AL D+ DV + + + + Sbjct: 178 ARRVVTRDEAPNHKLGTLAALFRATITPDHRALSDARATVDVMHALFDRMAPLGITHLED 237 Query: 189 EDRFFKEEKKTVPNISLL 206 V L Sbjct: 238 LATATDPVPADVRRRRHL 255 >gi|289772455|ref|ZP_06531833.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|289702654|gb|EFD70083.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] Length = 330 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 8/163 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + + P P + +HG+T + Sbjct: 25 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPQR---DPGPVWIHGLTSD 80 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P F + EF + +AHNA FD I E R ++ R+ Sbjct: 81 VLRDAPLFPDVAEEFAARLDG--RVLVAHNAVFDWQMIAREYARAEREAPVRQRLCTIAL 138 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P + L SL +G+ H AL D+ +L++ + Sbjct: 139 SKALDLPLPNHKLESLAAHFGVVQQRA--HHALDDARVLAEAF 179 >gi|227544953|ref|ZP_03975002.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300910016|ref|ZP_07127476.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112] gi|227185064|gb|EEI65135.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300892664|gb|EFK86024.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112] Length = 1443 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 78/198 (39%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL + D++IE+ AV++ D + R F F+ P G S + L IT E Sbjct: 426 YVIFDVETTGLSAIYDKVIELSAVKMQDGNVLER-FDEFIDP-GFPLSEQTTNLTSITTE 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + +F F DF HN FD+GF+N +R + I Sbjct: 484 MVQGSKTEEEVFQMFKDFCKG--CIIAGHNVAFDMGFMNTGYERHQMGKIAEPVIDTLPL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 LN+L K++ + + H H A DS + K + + Sbjct: 542 ARFLYPDMRGYRLNTLSKKFKVALEH--HHRANYDSEATGHLLYKFLKDAEARYDVKYVD 599 Query: 189 EDRFFKEEKKTVPNISLL 206 + EE + Sbjct: 600 DLNKHMEENNAYRHARPF 617 >gi|21220316|ref|NP_626095.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)] gi|256788562|ref|ZP_05526993.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|6117870|emb|CAB59443.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7) [Streptomyces coelicolor A3(2)] Length = 328 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 8/163 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + + P P + +HG+T + Sbjct: 23 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPQR---DPGPVWIHGLTSD 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P F + EF + +AHNA FD I E R ++ R+ Sbjct: 79 VLRDAPLFPDVAEEFAARLDG--RVLVAHNAVFDWQMIAREYARAEREAPVRQRLCTIAL 136 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P + L SL +G+ H AL D+ +L++ + Sbjct: 137 SKALDLPLPNHKLESLAAHFGVVQQRA--HHALDDARVLAEAF 177 >gi|33241759|ref|NP_876700.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae TW-183] gi|33236268|gb|AAP98357.1| DNA-directed DNA polymerase III alpha chain [Chlamydophila pneumoniae TW-183] Length = 232 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 7/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG + DRIIEI A S T+ +F ++ P EA K+HGIT + Sbjct: 5 IFYDTETTGTQIERDRIIEIAAY----NSVTDESFLTYVNPE-IPIPDEASKIHGITTDA 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P F + F F E + +N FD + E +R + +PL I Sbjct: 60 VLSAPKFPEAYEGFRKFCGEDSILVAHNNDGFDFPLLGKECRRHSLEPLTNRTIDSLKWA 119 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + +++L L + YG H AL D +L V+ ++ Sbjct: 120 QKYRPDLPKHNLQYLRQVYGFA--ENQAHRALDDVVILHKVFTSLIGD 165 >gi|297571338|ref|YP_003697112.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum DSM 20595] gi|296931685|gb|ADH92493.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum DSM 20595] Length = 200 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 8/166 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+ETTGLD DRIIEIG V L D + + F + P S A +H I+ Sbjct: 1 MTYAVVDVETTGLDLATDRIIEIGIVLLSDSLEQSGYFHSLIDPQR---SITAQHIHHIS 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-INAELQRINKDPLDPSRIID 125 + D PSF+ + + +AHNA FD+GF + +D + + Sbjct: 58 SAMVADAPSFALVAERVAKVLDG--QIIVAHNAPFDLGFLNAEFARAQAGISIDRANAVC 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 TL +R P + L L R GI H AL D+ ++++ Sbjct: 116 TLDQSRIYCPEGSHSLIGLAARLGIE--TPVAHRALADALTCTELF 159 >gi|296089746|emb|CBI39565.3| unnamed protein product [Vitis vinifera] Length = 332 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 61/206 (29%), Gaps = 9/206 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD ETTGL NDRIIEIG +L N TFQ + P R + Sbjct: 129 IVFDTETTGLSRANDRIIEIGLQDLGGGE--NSTFQTLVNPE-RIVPNPHVHGITTYMVN 185 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124 D P + + + + W+AHN + + P+ Sbjct: 186 RPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPNWRF 245 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 R+ S + +LSDVY + + F Sbjct: 246 LDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVGPAHRVLSDVYT-LSQVLQMLTFN 304 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDK 210 K + I+ K+ Sbjct: 305 LKVSVANLLDRSFTASDIINPKKKKN 330 >gi|225450649|ref|XP_002282861.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] gi|225450651|ref|XP_002282855.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] Length = 337 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 61/206 (29%), Gaps = 9/206 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD ETTGL NDRIIEIG +L N TFQ + P R + Sbjct: 134 IVFDTETTGLSRANDRIIEIGLQDLGGGE--NSTFQTLVNPE-RIVPNPHVHGITTYMVN 190 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124 D P + + + + W+AHN + + P+ Sbjct: 191 RPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPNWRF 250 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 R+ S + +LSDVY + + F Sbjct: 251 LDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVGPAHRVLSDVYT-LSQVLQMLTFN 309 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDK 210 K + I+ K+ Sbjct: 310 LKVSVANLLDRSFTASDIINPKKKKN 335 >gi|259503120|ref|ZP_05746022.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041] gi|259168986|gb|EEW53481.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041] Length = 1444 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL + D++IE+ AV++ + R F F+ P G S + L ITDE Sbjct: 423 YVIFDVETTGLSAIYDKVIELSAVKMKNGEVLAR-FDEFIDP-GFPLSEQTTNLTSITDE 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ S +F F DF HN FD+GF+N +R + + I Sbjct: 481 MVRGSKSEEEVFKMFKDFCAG--TIIAGHNVSFDMGFMNTGYRRHQMEEITEPVIDTLPL 538 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 LN+L K++ + + H H A D+ + K + + + Sbjct: 539 ARFLYPNMRGYRLNTLSKKFKVALEH--HHRANFDAEATGHLLYKFLKDAEKRYEIRYVD 596 Query: 189 EDRFFKEEKKTVPNISLL 206 E E + Sbjct: 597 ELNQHMAENDAYKHARPF 614 >gi|239832702|ref|ZP_04681031.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG 3301] gi|239824969|gb|EEQ96537.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG 3301] Length = 353 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 74/234 (31%), Gaps = 23/234 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ + IIEIGAV D F L R + ++ GI Sbjct: 95 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDICATFGALQQPSRPIPADITRITGI 154 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE ++ + D + IAHNA FD F+ +R + + Sbjct: 155 TDEMVRGQTIPREKL----DALIAEADIIIAHNAGFDRPFL----ERFSIAFANKPWACS 206 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178 I L L + G + + + +++ Sbjct: 207 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKEQSGDTTPFAELLKAS 266 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 + F ++ R K +T I +EELD + + Sbjct: 267 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEIGEEELDAELEYL 320 >gi|148269564|ref|YP_001244024.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1] gi|147735108|gb|ABQ46448.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1] Length = 186 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 9/172 (5%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG D DRI+EI AV + N+ F + P R K+HGI++ Sbjct: 10 VVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNPRIR-IPALVQKVHGISNM 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P ++++ F D+ + HNA FD+ F++ + P+ I Sbjct: 69 DIEEAPDMDAVYNLFRDYVKG--TVLVFHNANFDLTFLDMMAKETGNFPITNPYIDTLDL 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + L LC+R GI + R H AL D+ + + V++K++ + Sbjct: 127 SEEIF--GRPHSLKWLCERLGIKTTIR--HRALPDALVTARVFVKLVEFLGE 174 >gi|51892851|ref|YP_075542.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] gi|51856540|dbj|BAD40698.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] Length = 958 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 4/116 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG ++DR+IE+ AV D + F + P G L GI Sbjct: 6 FVAIDVETTGTSPEHDRLIEVAAVRFEDGREIG-CFSRLIDP-GCPVPQRIQHLTGIHPA 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 L KP + + F + +AHNA FDV F+ A R + + S Sbjct: 64 MLAGKPRIEEVVPDLASFLGD--LPLVAHNAPFDVAFLQAAFARAGRSLPNWSYDT 117 >gi|305667754|ref|YP_003864041.1| putative DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170] gi|88707591|gb|EAQ99833.1| putative DNA polymerase III epsilon chain [Maribacter sp. HTCC2170] Length = 258 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 87/231 (37%), Gaps = 21/231 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG + +DRI+EI +++ + +K ++T+ + P + E + +HGI++E Sbjct: 11 FFDLETTGTNVAHDRIVEISILKVFPNGNKESKTW--LVNPE-KDIPAEVIAIHGISNEK 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P+F + E + + + N L+ + +D +I Sbjct: 68 VANEPTFKELSKEVYLMIKDCDLGGFNSNRFDIPLLAEEMLRADVDFDMKNMVSVDVQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + ++ H A D++ +V + + ++ Sbjct: 128 FHK----MEKRTLEAAYKFYCDKDLTDAHSAEADTNATYEVLLSQLDRYPEL-------- 175 Query: 190 DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE---H--DKTIQTLGKNA 235 + K+ + + L+ + +EE+ H K + L K Sbjct: 176 ENNVKKLAEFSTHKKLVDFAGFIAMDDNEEEVFAFGKHNGKKVLDVLDKEP 226 >gi|256825435|ref|YP_003149395.1| hypothetical protein Ksed_16150 [Kytococcus sedentarius DSM 20547] gi|256688828|gb|ACV06630.1| exonuclease, DNA polymerase III, epsilon subunit family [Kytococcus sedentarius DSM 20547] Length = 584 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 68/203 (33%), Gaps = 4/203 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG S + I E GAV++ FQ + P P L GIT Sbjct: 27 FVVFDLETTGTSSADSEITEFGAVKVRGGEVVGE-FQTLVRP-AAGIPPYIQVLTGITTA 84 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + PS + F +F + A +AHNA+FD F+ +R + + Sbjct: 85 MVSAAPSIEQVLPNFLEFVGD--AVLVAHNARFDTAFVRRACERTGRPAPGNPVLDTVHL 142 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + H AL D+ DV ++ + Sbjct: 143 ARQLLPRPEVPNHKLSTLAAYFRAETTPSHRALDDARATVDVLHGLIERVGPLGVHSLEE 202 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 + + + L D P Sbjct: 203 LLAYSRHVPEARRRKRTLAADLP 225 >gi|124002035|ref|ZP_01686889.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134] gi|123992501|gb|EAY31846.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134] Length = 463 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 23/213 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTGL +D+I EI + D +F + P S ++ GIT++ + Sbjct: 4 IIDVETTGLRPTDDKITEIAIYK-HDGESVVDSFHSLVNPEC-YISDRITQITGITNDMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F I + + ++AHNA FD GF+ E + + + + T+ ++ Sbjct: 62 ANAPKFYEIAKDILA--ITEGTVFVAHNAHFDYGFVREEFKALGYK--FTRKTLCTVRVS 117 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R+ P + + I + H A D+ +V+ K++ Sbjct: 118 RKVFPGLPSYSLAK-LCKHFKIQLTNHHRASADALATVEVFEKLLEK------------- 163 Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 K T + + K L +I +E Sbjct: 164 ---NSSKLTKNVVETEIKAKNLPPKINLDEYQA 193 >gi|320535302|ref|ZP_08035422.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Treponema phagedenis F0421] gi|320147834|gb|EFW39330.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Treponema phagedenis F0421] Length = 216 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 11/203 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTGL + D ++EIG ++ R F + + P G+ + ++ ITD L Sbjct: 17 AFDTETTGLKQEEDSVVEIGGIKFDHRGVIAR-FNILINP-GKPMPEDVTAVNNITDAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP F+++ +F F + +AHNA FD+GFIN EL+R K PL I + Sbjct: 75 ADKPPFNAVIPDFLRFIKK--TVLVAHNAPFDIGFINNELKRCKKPPLTNKVIDTLVLAQ 132 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 ++ I+ H A DS + + + + F N + Sbjct: 133 EVFPGLGKHQYRLQNLALQFGITALEAHRAEDDSRVCMEFFTIAVEH-------FFKNNE 185 Query: 191 RFFKEEKKTVPNISLLKRDKPLF 213 + K+ K +L+ P Sbjct: 186 KLVKQIKANTNIEEILREAPPPV 208 >gi|318057718|ref|ZP_07976441.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG] gi|318079748|ref|ZP_07987080.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF] gi|333028027|ref|ZP_08456091.1| putative DNA polymerase III subunit epsilon [Streptomyces sp. Tu6071] gi|332747879|gb|EGJ78320.1| putative DNA polymerase III subunit epsilon [Streptomyces sp. Tu6071] Length = 331 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 8/170 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ + + + + P P + +HG+T E Sbjct: 19 YAVVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTLVNPER---DPGPVWIHGLTSE 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I E + +AHNA FD + E R R+ Sbjct: 75 VLEGAPLFPEIAEELSRRLDG--RVLVAHNAVFDWSMLAREYARAGITAPVRRRLCTIAL 132 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 P + L +L +G+ H AL D+ +L++ + + Sbjct: 133 AKELALPLPNHKLETLAAHFGVEQRRA--HHALDDARVLAEAFRPSLRAA 180 >gi|302518301|ref|ZP_07270643.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] gi|302427196|gb|EFK99011.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] Length = 329 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 8/170 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ + + + + P P + +HG+T E Sbjct: 21 YAVVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTLVNPER---DPGPVWIHGLTSE 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I E + +AHNA FD + E R R+ Sbjct: 77 VLEGAPLFPEIAEELSRRLDG--RVLVAHNAVFDWSMLAREYARAGITAPVRRRLCTIAL 134 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 P + L +L +G+ H AL D+ +L++ + + Sbjct: 135 AKELALPLPNHKLETLAAHFGVEQRRA--HHALDDARVLAEAFRPSLRAA 182 >gi|302392350|ref|YP_003828170.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium arabaticum DSM 5501] gi|302204427|gb|ADL13105.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium arabaticum DSM 5501] Length = 1440 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTG + ++ IIEIGA ++ D +R F + P + ++L GI + Sbjct: 428 YIVFDLETTGFNPYHNEIIEIGAAKVKDGRIIDR-FGTLVDPET-EIPERIVELTGIDNS 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103 + KP +EF DF E + + Sbjct: 486 MVAGKPKKEEALNEFLDFVGEATIVAHNLSFDRNF 520 >gi|295695291|ref|YP_003588529.1| DNA polymerase III, epsilon subunit [Bacillus tusciae DSM 2912] gi|295410893|gb|ADG05385.1| DNA polymerase III, epsilon subunit [Bacillus tusciae DSM 2912] Length = 250 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 6/177 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPN-GRKNSPEALKLHGIT 66 +VFD ETTG D + D +IEIGAV + + ++TF + GR+ ++ G++ Sbjct: 58 YVVFDTETTGFDWRTDALIEIGAVRVENGQVREDQTFSSLIALEPGRRVPEVVRRITGLS 117 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ L P + S F +A +AH+A DV F+N L + L P R++DT Sbjct: 118 EQELWRAPKVQDVLSRFMA--FSSDAVLVAHHAGHDVNFLNVPLNQFYGIEL-PRRVVDT 174 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +ARR P + + I ++H AL D+ L + ++ + ++ Sbjct: 175 AQVARRLWPDTGEATLDY-LIERMAIPPLTRHRALNDALLTARIWSVFLTLFTRKGL 230 >gi|241895743|ref|ZP_04783039.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313] gi|241870786|gb|EER74537.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313] Length = 1437 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV+++ + F F+ P G S + L ITD+ Sbjct: 421 YVVFDVETTGLSAAYDKVIELSAVKMVKGNVIAE-FSEFIDP-GFSLSQTTVDLTSITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ S +F+ F +F+ + A + HN FD+GF+N +R + I Sbjct: 479 MVRGSKSEKEVFTAFREFYGD--AILVGHNVTFDMGFMNEGYERHGMGSITNPVIDTLTL 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 LN+L K +G+ H A+ DS + + + Sbjct: 537 ARFLYPNMRSYRLNTLAKHFGVL--LEQHHRAIFDSETTGHLNRIFLEEARE 586 >gi|125624340|ref|YP_001032823.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. cremoris MG1363] gi|124493148|emb|CAL98112.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. cremoris MG1363] gi|300071124|gb|ADJ60524.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. cremoris NZ9000] Length = 277 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 4/167 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +VFD ETTG ++ + II+IGAV+ + ++ F + S E +L GI Sbjct: 4 KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQELARFNQLVKNQRSYVSTEITQLTGIKP 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L ++P+ I +F DF +AHNA FD+ F+ + ++ R+ DTL Sbjct: 64 ADLLNQPTIEEILPDFLDFIKG--HLVVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ S L + ++ H AL D + + +Y + Sbjct: 122 AESKKLLTMSSYALENFKDLL--EMNDLRSHDALNDCLITAKLYQYL 166 >gi|255316545|ref|ZP_05358128.1| DNA polymerase III PolC [Clostridium difficile QCD-76w55] Length = 285 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 7/167 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V DIETT K RI+EIGAV++ + + F + P + + +L IT+ Sbjct: 17 FVVVDIETTAFSIQKGGRILEIGAVKIKNGEIVDN-FSTLVNPELK-IPKKITELTKITN 74 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +KD P ++ +F +F ++ + +AHNA FD + Sbjct: 75 DMVKDAPYIGNVLQKFNEFISD--SVIVAHNASFDWDRFLKPALATIGIKSSHKVMDTVS 132 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++ L LC + H A+ D+ + ++K+ Sbjct: 133 LSKFTFPDKKKHTLIDLCSYL--EVPLEKNHRAIDDAIATAKCFLKL 177 >gi|120599313|ref|YP_963887.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1] gi|120559406|gb|ABM25333.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1] Length = 298 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 3/167 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + I D ETTGL+++ D+IIEI A++ S + F+ + P K + + GIT+ Sbjct: 18 KFIALDAETTGLEAETDKIIEIAAIKFDLLSNDHPVFESLINP-AVKVPRKITNITGITN 76 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L D+P F+ + + F + +A+NAKFD GF++AE + + L Sbjct: 77 KMLVDQPPFAELAQDLKAFIGD--LPIVAYNAKFDKGFLDAEFANVGIVLNNQYHCALNL 134 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + A P+ + + + +HR+K A+ + + + Sbjct: 135 AKAAFSLPNYKLATVAKHCNIPLDEAHRAKADAIAAGRVFMCAAVTL 181 >gi|124005083|ref|ZP_01689925.1| exonuclease [Microscilla marina ATCC 23134] gi|123989335|gb|EAY28896.1| exonuclease [Microscilla marina ATCC 23134] Length = 245 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 76/205 (37%), Gaps = 8/205 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG D+ NDRI++I ++L D +K + + + P PE K+HG++DE Sbjct: 8 VFFDLETTGTDTLNDRIVQIAIIKLAADGTKVEK--ERLINP-TIPIPPEVTKVHGVSDE 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P+F + ++F + H I + P + ID + Sbjct: 65 MVKDAPTFHQVAKSLFEFIRGCDLAGYNHLNFDMPLLIEEFARAGVVFPEPDVQYIDVMK 124 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + HP S + + H A+ D+ +++ + Sbjct: 125 VYYHFHP----RTLSAAYQLYCHKELENAHNAMADTQATLEIFESQLATHFDEEPSINEI 180 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 + F ++ + Sbjct: 181 HNLCFSSRHVDFSRRLARDKEGEII 205 >gi|332637692|ref|ZP_08416555.1| DNA polymerase III PolC [Weissella cibaria KACC 11862] Length = 1440 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 63/172 (36%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV+++ + F F+ P + + Sbjct: 424 FVVFDVETTGLSAVYDKVIELSAVKMVKGNVIAE-FSEFIDPG---FPLSQTTVDLTSIT 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S +A + HN FD+GF+ R P+ I + Sbjct: 480 DDMVRGSKPEKQVFEEFREFYGDAVLVGHNVTFDMGFMQEGYARHQLAPITNPVIDTLIL 539 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 LN+L K +GI H A+ DS + + + Sbjct: 540 ARFLYPNMRSYRLNTLAKHFGIV--LEQHHRAIFDSETTGHLNRVFLEQARE 589 >gi|116511811|ref|YP_809027.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. cremoris SK11] gi|116107465|gb|ABJ72605.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactococcus lactis subsp. cremoris SK11] Length = 277 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 4/167 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +VFD ETTG ++ + II+IGAV+ + ++ F + S E +L GI Sbjct: 4 KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQELARFNQLVKNQRSYVSTEITQLTGIKP 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L ++P+ I +F DF +AHNA FD+ F+ + ++ R+ DTL Sbjct: 64 ADLLNQPTIEEILPDFLDFIKG--HLLVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ S L + ++ H AL D + + +Y + Sbjct: 122 AESKKLLTMSSYALENFKDLL--EMNDLRSHDALNDCLITAKLYQYL 166 >gi|328957406|ref|YP_004374792.1| DNA polymerase III PolC [Carnobacterium sp. 17-4] gi|328673730|gb|AEB29776.1| DNA polymerase III PolC [Carnobacterium sp. 17-4] Length = 1446 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 72/198 (36%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + IIE+ AV++ + +F+ F+ P + ++ Sbjct: 426 YVVFDVETTGLSAVYNSIIELSAVKMHKGNII-ESFEQFIDPG---HPLSQTTINLTGIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 S S + +AHNA FD+GF+N + N I Sbjct: 482 DEMVHGSKSEEEVLTLFKEFAGDHILVAHNASFDMGFLNTSNAKHNIPDATNPVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L K+YG I+ H A+ DS + + + + F + Sbjct: 542 SRFLHPQYKSHRLNTLAKKYG--INLEQHHRAIFDSETTGQLCWLFLKEAKEEHEMFYHD 599 Query: 189 EDRFFKEEKKTVPNISLL 206 + E Sbjct: 600 QLNEHIGEGDAYKRARPF 617 >gi|317503311|ref|ZP_07961361.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae DSM 15606] gi|315665570|gb|EFV05187.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae DSM 15606] Length = 286 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 77/216 (35%), Gaps = 11/216 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGLD NDRII++ +++ K R + P GR +L GI DE Sbjct: 10 VVFDLETTGLDIVNDRIIQLSFIKVYPDGKEERGDH-LINP-GRHIPEMITELTGIDDEK 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD PSF I + + F + N L+ R+ID +I Sbjct: 68 VKDAPSFKQISTTLAETFKGCDFAGFNSNRFDVPMLAEEFLRAGIDFDFSKCRLIDAQAI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + ++ A Y +M + + + Sbjct: 128 FHK----MERRNLAAAYKFYCGRKMEEDFEAHRADQDTEATYRVLMGELDMYSKEQQDED 183 Query: 190 DRFFKEEKKTVPNISLLKRD-----KPLFTRITKEE 220 +R + + S + + ++ IT +E Sbjct: 184 ERILPNDMDFLAEFSKQNDNVDFAGRMIWAPITDKE 219 >gi|312887472|ref|ZP_07747071.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM 18603] gi|311300112|gb|EFQ77182.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM 18603] Length = 456 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 7/172 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + ++ TNR F+ + P G L GI ++ Sbjct: 2 YAIVDIETTGGHASAHGITEIAIIIHDGHTITNR-FETLINP-GMLIPMHIQVLTGIDND 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ P FSSI ++ N + + L ++ Sbjct: 60 MVKNAPPFSSIAQHVYEILEPCTFVAHNVNFDY---SFVKHHLMASGYDLQSPKLCTVRL 116 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + L C GI + ++H A+ D+ + ++ M++ + Sbjct: 117 GRKIFPGLPSYSLGKFCGHMGID--NSARHRAMGDADATAKLFSMMLLNDKE 166 >gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] gi|295827583|gb|EDY45420.2| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] Length = 331 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 8/170 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ + + + + P P + +HG+T E Sbjct: 19 YAVVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTLVNPER---DPGPVWIHGLTSE 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I E + +AHNA FD + E R R+ Sbjct: 75 VLEGAPLFPEIAGELSRRLDG--RVLVAHNAVFDWSMLAREYARAGITAPVRRRLCTIAL 132 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 P + L +L +G+ H AL D+ +L++ + + Sbjct: 133 AKELALPLPNHKLETLAAHFGVEQRRA--HHALDDARVLAEAFRPSLRAA 180 >gi|237653313|ref|YP_002889627.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|237624560|gb|ACR01250.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 769 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 8/167 (4%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGL+ + D II++GA +L+ +F+ + P R +PE+ K+HGIT E Sbjct: 581 VFDTETTGLNPSQGDEIIQVGATRILNGKLLRAESFEQLVDPE-RPLAPESAKIHGITSE 639 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ +P+ + F + IAHNA FD+ F+ + ++ P LS Sbjct: 640 MLRGQPTIDKVLPAFHA--FAADTVLIAHNAAFDMRFLQLKEEQTGLRFDHPVIDTLLLS 697 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + L ++ +R G+TI R H AL D+ + ++V++K++ Sbjct: 698 AVVHPN-QESHRLEAIAERLGLTIVGR--HTALGDAIVTAEVFLKLI 741 >gi|94501331|ref|ZP_01307852.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65] gi|94426602|gb|EAT11589.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65] Length = 738 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG + R+ E+G V++L+ + +Q + P R +L GI++E Sbjct: 573 YVIVDVETTGGRKEQHRVTEVGMVKVLNGEIVDE-WQSLINP-MRHIPQSITRLTGISNE 630 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P F + E +F + ++AHN FD GF +E +R+ + P +S Sbjct: 631 MVSNAPVFDDVADEIAEFCAG--SVFVAHNVNFDYGFFRSEFERLGRRFHAPKLCTVQMS 688 Query: 129 IAR 131 Sbjct: 689 RKY 691 >gi|327312374|ref|YP_004327811.1| UvrD/REP helicase [Prevotella denticola F0289] gi|326945342|gb|AEA21227.1| UvrD/REP helicase [Prevotella denticola F0289] Length = 896 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 3/120 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGIT 66 IVFD ETTGLD D IIEI A+ + +++ P K + ++ I Sbjct: 515 IVFDTETTGLDVFTDDIIEIAAMRIRGGEIVGEPLDLYIETGKPILPKLGDKENPMYAIY 574 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + + + HNA +D +N L+R D + Sbjct: 575 HEKMAAGELLAPAEGLCRFLTYIGTRPILGHNASYDYNILNNCLRRYCNDTMQAHGNRCF 634 >gi|167753685|ref|ZP_02425812.1| hypothetical protein ALIPUT_01966 [Alistipes putredinis DSM 17216] gi|167658310|gb|EDS02440.1| hypothetical protein ALIPUT_01966 [Alistipes putredinis DSM 17216] Length = 257 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 72/200 (36%), Gaps = 9/200 (4%) Query: 2 IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 + N R I+F D+ETTG+D DRI+EI V+++ D + RT + P G EA Sbjct: 1 MELNLKRPIIFFDLETTGIDIARDRIVEISMVKVMPDGEEIVRT--RRINP-GMPIPAEA 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGITDE +KD P F I F + N + ++ Sbjct: 58 TAIHGITDEDVKDCPLFPQIAKSLAQFIEGCDFGGFNSNRFDLPMLVEEFMRAGVDVDFR 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ID +I + ++ H A D+ +V + Sbjct: 118 KRKFIDVQNIFHK----MEQRTLVAAYKFYCGKDLADAHSAEADTLATYEVLKAQLDRYG 173 Query: 180 QINFGFKTNEDRFFKEEKKT 199 ++ + + E Sbjct: 174 ELQNDVAALAEFSTRAESAD 193 >gi|284032480|ref|YP_003382411.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM 17836] gi|283811773|gb|ADB33612.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM 17836] Length = 415 Score = 68.8 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 9/184 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D ETTGL R+IEI V L + + + L P +HGI Sbjct: 2 YAVIDTETTGLLPGHRHRVIEIAVVLLDQHGRFEHEWVTLLNPQRDLGP---QHIHGILT 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIIDT 126 + P F + + HN +FD+GF+ + + PL R + T Sbjct: 59 ADVLAAPEFVDVARHLGALLAGRMVV--GHNVEFDLGFLRAEFARLGHVVPLITERSMCT 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +++A +P S+ L + C GI+ + H AL D+ ++++ + Sbjct: 117 MALAGYLYPGSKRTLGACCAAAGIS--LQGWHSALADTRATAELFATYLRSFPSPPPWQW 174 Query: 187 TNED 190 E+ Sbjct: 175 AYEE 178 >gi|331091091|ref|ZP_08339933.1| hypothetical protein HMPREF9477_00576 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405313|gb|EGG84849.1| hypothetical protein HMPREF9477_00576 [Lachnospiraceae bacterium 2_1_46FAA] Length = 236 Score = 68.8 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 74/217 (34%), Gaps = 11/217 (5%) Query: 7 MR--KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 MR I FD+ETTGL + D IIEIGAV++ + +R F FL P S + Sbjct: 1 MRKTYISFDLETTGLSEEKDYIIEIGAVKVNNGKVVDR-FARFLKPP---ISISNTITNL 56 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 K + + + + HN FD F+ R Sbjct: 57 TGITDDMVKNAGDTQETIKDFIKFCDGYFLLGHNIMFDYKFMKTYAARFGLHFEKEGIDT 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 ++ K+ S++ + I + S H A D+ + +Y + Sbjct: 117 LKIARKVHKNLESKSLES---LCTYYNIVNASAHRAYHDALATAKLYHMLAHDFEVSEPS 173 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKE 219 T E +K +K L L +++E Sbjct: 174 LFTPETLCYKPKKVQKITKKQLIYLTSLLEYHSLSEE 210 >gi|229138336|ref|ZP_04266930.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST26] gi|228645101|gb|EEL01339.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST26] Length = 99 Score = 68.8 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 6/100 (6%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K D+I +I AV + D F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + +K P F + + A ++AHN FD F Sbjct: 62 DESMVKQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNF 99 >gi|170288240|ref|YP_001738478.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2] gi|170175743|gb|ACB08795.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2] Length = 186 Score = 68.8 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 9/172 (5%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG D DRI+EI AV + N+ F + P R K+HGI++ Sbjct: 10 VVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNPRIR-IPALIQKVHGISNM 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P ++++ F D+ + HNA FD+ F++ + P+ I Sbjct: 69 DIEEAPDMDAVYNLFRDYVKG--TVLVFHNANFDLTFLDMMAKETGNFPITNPYIDTLDL 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + L LC+R GI + R H AL D+ + + V++K++ + Sbjct: 127 SEEIF--GRPHSLKWLCERLGIKTTIR--HRALPDALVTARVFVKLVEFLGE 174 >gi|183983226|ref|YP_001851517.1| hypothetical protein MMAR_3235 [Mycobacterium marinum M] gi|183176552|gb|ACC41662.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 674 Score = 68.8 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 10/175 (5%) Query: 9 KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +V D+ETTG + D I EIGAV++ F + P R P+ ++L Sbjct: 57 FVVVDLETTGGRATGTEASPPDAITEIGAVKVRGGVILGE-FATLVDPQ-RSIPPQIVRL 114 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT L D P+ S+ F++F N+ +AHNA FD+GF+ A R + Sbjct: 115 TGITTAMLCDAPTIDSVLPMFFEFV--GNSVLVAHNAGFDIGFLRAAAGRCDIAWPGSKV 172 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + R + +++ + H AL D+ +V ++ Sbjct: 173 LCTVRLARRVLSREEAPSVRLAALARLFSVATQPTHRALDDARATVEVLHALIER 227 >gi|152967191|ref|YP_001362975.1| hypothetical protein Krad_3247 [Kineococcus radiotolerans SRS30216] gi|151361708|gb|ABS04711.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans SRS30216] Length = 601 Score = 68.8 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 67/197 (34%), Gaps = 3/197 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + I EIGAV++ FQ + P+ L GIT+ Sbjct: 28 FVVVDLETTGGAPADAGITEIGAVKVRGGQVLGE-FQTLVRPSS-PIPAFVQVLTGITNG 85 Query: 69 FLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + PS + + F +F E+ +AHNA +D F+ A Q + P + + Sbjct: 86 MVATAPSLAQVLPAFLEFAGFERGTVLVAHNAPYDTSFLKAACQVTGRPWPKPRVVDTVV 145 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + D + H AL D+ DV ++ Sbjct: 146 LARQLVDRDEAPDRKLGTLARLFGTATTPDHRALHDARATVDVLHALLGRVGNRGVHSLE 205 Query: 188 NEDRFFKEEKKTVPNIS 204 + F V Sbjct: 206 DLSAFAATAVNPVRRAK 222 >gi|219850553|ref|YP_002464986.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM 9485] gi|219544812|gb|ACL26550.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM 9485] Length = 233 Score = 68.8 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 5/73 (6%) Query: 8 RKI---VFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLC-PNGRKNSPEALKL 62 R++ V D+ETTGLD ++D +I IGAV + + +T+ + P GR+ S E++++ Sbjct: 34 REVPYTVIDVETTGLDPRHDALIAIGAVNVENGRVLLKQTWHSLIRPPPGREPSVESIRV 93 Query: 63 HGITDEFLKDKPS 75 H +T E L+D P Sbjct: 94 HHLTPEELRDAPP 106 >gi|269956792|ref|YP_003326581.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM 15894] gi|269305473|gb|ACZ31023.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica DSM 15894] Length = 584 Score = 68.8 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 4/174 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + + I EIGAV++ FQ + P GR+ +L GIT Sbjct: 33 FVVVDLETTGTRTTDSGITEIGAVKVRGGEVLGE-FQSLVNP-GREVPAFVARLTGITTA 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + PS + F + + +AHNA FDVGF+ A + + Sbjct: 91 MVSTAPSIDLVLPSFLE--WAHDCVLVAHNAPFDVGFLKAAAAGLGYPWPGFPVVDTVPL 148 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R + + +H AL D+ DV ++ + Sbjct: 149 ARRVVPKDEAPNHKLATLAHLFRARVTPEHRALADARATVDVLHGLLDRLGAMG 202 >gi|159899742|ref|YP_001545989.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus ATCC 23779] gi|159892781|gb|ABX05861.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 927 Score = 68.8 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D+ETTGL+ D IIE+GAV+ ++ T+Q + P + + +L GI Sbjct: 5 YIALDLETTGLEPGRDEIIEVGAVKFR-GNEVLETYQTLVKPK-QVLPIKIARLTGIDAH 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE 93 L P+F+SI + F Sbjct: 63 ELTTAPTFNSIGGQLAKFLKSYPII 87 >gi|254720591|ref|ZP_05182402.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13] gi|265985632|ref|ZP_06098367.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13] gi|306838555|ref|ZP_07471392.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653] gi|264664224|gb|EEZ34485.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13] gi|306406341|gb|EFM62583.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653] Length = 332 Score = 68.4 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 64/227 (28%), Gaps = 9/227 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ + IIEIGAV D F L + E ++ GI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE +K + D + A + F F A + + Sbjct: 134 TDEMVKGRTIPRDELDALIDGADIIIAHNAGFDRPFLERFSIAFANKPWACSVKEIDWTA 193 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + S + + +++ + Sbjct: 194 RGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTP-FAELLKASQRARMRI 252 Query: 186 KTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 F ++ R K +T + ++EL+ + + Sbjct: 253 YAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 299 >gi|171059184|ref|YP_001791533.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6] gi|170776629|gb|ACB34768.1| Exonuclease RNase T and DNA polymerase III [Leptothrix cholodnii SP-6] Length = 218 Score = 68.4 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 57/175 (32%), Gaps = 4/175 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGLD D II IGAV ++ + T+ ++ + P RK S +++++H + + Sbjct: 41 WVALDCETTGLDVGRDEIIAIGAVRIVGNRIMTSERLELLVRPEKRKLSADSVRVHRLRE 100 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA---KFDVGFINAELQRINKDPLDPSRII 124 + + + F + + + + ++ S + Sbjct: 101 QDVAQGLKPEEAVMQLMHFIGSRPLVGYYLEFDLAMINRVAWPMLGMGLPQPRIEVSSLY 160 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++ L + + A + + + Sbjct: 161 HDYKHRQLLPYQQQSVNIDLRFDTLMKDLDLPQRDAHDALNDAVMAALAYLKLRR 215 >gi|160915589|ref|ZP_02077800.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991] gi|158432709|gb|EDP10998.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991] Length = 1447 Score = 68.4 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 6/228 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL S+ D IIE G + D + ++ Q+F+ P ++L GI++E Sbjct: 399 YCVFDLETTGLSSRFDHIIEFGGQIVKDRTCI-KSLQLFIKPP-VPIPAHIVELTGISEE 456 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ SF+ + DF + + +AHNA FD F+N+EL RI + PL + +IDTL Sbjct: 457 HVRNAKSFAECADQILDFIGD--SILVAHNADFDYNFLNSELVRIGRKPL-DNPVIDTLD 513 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187 +AR L + + YGI H A D+ +L++ Y+ M+ I N Sbjct: 514 LARSMQDRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLANTYMNMLNDLKHIQNLAALQ 573 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + K ++++L ++ + + H K + K+ Sbjct: 574 DMQNARSFTKVRAKHVTILVKNAAGLKELFELVTLSHTKYLSYSDKST 621 >gi|254517741|ref|ZP_05129797.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium sp. 7_2_43FAA] gi|226911490|gb|EEH96691.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium sp. 7_2_43FAA] Length = 188 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 I+ K R I FD+ETTGL ND+IIE+GAV + + + + Sbjct: 21 IKNLKNRYIAFDVETTGLSPINDKIIEVGAVLFENGEIIKK-YSYLVN 67 >gi|149911269|ref|ZP_01899891.1| exonuclease [Moritella sp. PE36] gi|149805654|gb|EDM65654.1| exonuclease [Moritella sp. PE36] Length = 138 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 2/74 (2%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I+ D ETTGL DR IEIGAV++ D T R FQ + P R +S A D Sbjct: 9 IILDFETTGLSPDMGDRAIEIGAVKIEDGEITGR-FQELMYPGRRVSSFIADYTSITNDM 67 Query: 69 FLKDKPSFSSIFSE 82 + P + Sbjct: 68 LVDAAPCEEVMHRF 81 >gi|302346280|ref|YP_003814578.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845] gi|302150309|gb|ADK96570.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845] Length = 896 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 3/120 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGIT 66 +VFD ETTGL+ D IIEI A+ + +++ P + ++ I Sbjct: 515 VVFDTETTGLNVFQDDIIEIAAIRIKGGEVVGEPLDLYIETDKPILPMLGDKENPMYAIY 574 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + S + + + HNA +D ++ LQR D + I Sbjct: 575 HEKMSTGELLSPSDALRRFLAYVGTSPILGHNANYDYNILDNNLQRYCNDTMQAHDIRCF 634 >gi|323345727|ref|ZP_08085950.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella oralis ATCC 33269] gi|323093841|gb|EFZ36419.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella oralis ATCC 33269] Length = 284 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 68/198 (34%), Gaps = 6/198 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGLD ND II+I +++ K R +F+ P G E L GI ++ Sbjct: 10 IVFDLETTGLDLVNDHIIQISYIKVYPDGKEERE-NIFVNP-GISIPEEVTLLTGIGNDD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P+F I S + F + N L+ R+ID +I Sbjct: 68 VKDAPTFKEIASSLCEKFKGCDFAGYNSNHFDIPMLAEEFLRAGIDFDFAHCRLIDAQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + ++ A Y +M + N Sbjct: 128 FHK----MEKRNLAAAYKFYCGRKMEEDFEAHRADQDTEATYKVLMGELDKYNPETAEEP 183 Query: 190 DRFFKEEKKTVPNISLLK 207 DR + + S Sbjct: 184 DRALANDMDVLAEFSKNN 201 >gi|288556947|ref|YP_003428882.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4] gi|288548107|gb|ADC51990.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4] Length = 1432 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 6/196 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + IIE+ AV++ + +R F+ F P+ + ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYNTIIELAAVKIKNGEIIDR-FESFADPH-EPLTNTIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K +P + +F +F A +AHNA FD+GF+N Q+I I Sbjct: 476 MVKGQPEVGEVLKDFHEFVGT--ATLVAHNASFDMGFLNVGYQKIGLGDATNPVIDTLEL 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK++ I S H A+ D+ + KM+ ++ N Sbjct: 534 GRFLYPELKNHRLNTLCKKF--DIELVSHHRAIYDAEATGYLLWKMVRDANERNVTHHDQ 591 Query: 189 EDRFFKEEKKTVPNIS 204 + + T S Sbjct: 592 LNNHMGQGNFTRQRPS 607 >gi|195542024|gb|ACF98221.1| putative DNA polymerase III epsilon subunit [uncultured bacterium 1114] Length = 312 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 4/108 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D ETTGLD DRI+ IGAV L +RTF+ + P G A +HGI D Sbjct: 30 ALDTETTGLDPGRDRIVAIGAVRLHGRRLYPSRTFETLVRP-GISIPASASAIHGIGDAM 88 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + P + I+ + + H+ FD+ I A +R Sbjct: 89 VAGAPGMAEIWPRLSPWLAG--RVVLGHHVDFDLAMIGAAARRHGFSW 134 >gi|329929867|ref|ZP_08283543.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp. HGF5] gi|328935845|gb|EGG32306.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp. HGF5] Length = 971 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 6/177 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ V D ETTG + D II++G + + +R + ++ P G P L GI+ Sbjct: 14 MKFAVLDFETTG-NQSADEIIQVGLAIIEEDRSISRVYGTYVNP-GIPIPPFITGLTGIS 71 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D PS + E ++ + HN FD F+ L R P + Sbjct: 72 DSDVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFSGRILDTM 129 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L + +G+ H A D+ + +K + ++ Sbjct: 130 HFLKICFPSLPSYQLGMVSSHFGLEHDRP--HQADSDALATAYALLKCLEEIDELPL 184 >gi|300173484|ref|YP_003772650.1| DNA polymerase III subunit alpha [Leuconostoc gasicomitatum LMG 18811] gi|299887863|emb|CBL91831.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc gasicomitatum LMG 18811] Length = 1437 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 6/171 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL + D+IIE+ AV++ + + F ++ P G S KL ITD Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVKMQLGNVIEK-FSEYINP-GFPLSDFTTKLTSITDT 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +I F + E A I HN FD+GF+NA R +++ + I Sbjct: 477 MVAHTDTEENIIKRFRQWVGE--AVLIGHNVTFDIGFMNAAYARYSQESITNPVIDTLPF 534 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 L ++ KR+ I+ H A+ D+ + +++ + Sbjct: 535 TRWLYPDYKSYRLGTIAKRFN--INLEQAHRAIFDAETTGHIAWRLIKEAN 583 >gi|261406087|ref|YP_003242328.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp. Y412MC10] gi|261282550|gb|ACX64521.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp. Y412MC10] Length = 958 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 6/177 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ V D ETTG + D II++G + + +R + ++ P G P L GI+ Sbjct: 1 MKFAVLDFETTG-NQSADEIIQVGLAIIEEDRSISRVYGTYVNP-GIPIPPFITGLTGIS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D PS + E ++ + HN FD F+ L R P + Sbjct: 59 DSDVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFSGRILDTM 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L + +G+ H A D+ + +K + ++ Sbjct: 117 HFLKICFPSLPSYQLGMVSSHFGLEHDRP--HQADSDALATAYALLKCLEEIDELPL 171 >gi|160878305|ref|YP_001557273.1| DNA polymerase III, epsilon subunit [Clostridium phytofermentans ISDg] gi|160426971|gb|ABX40534.1| DNA polymerase III, epsilon subunit [Clostridium phytofermentans ISDg] Length = 235 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52 M + DIE+TGL + DRIIEI A+ +D F+ + P Sbjct: 1 MNFLAIDIESTGLSPEKDRIIEIAAIRYIDGKP-KERFEKLINPGC 45 >gi|288802867|ref|ZP_06408304.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18] gi|288334684|gb|EFC73122.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18] Length = 896 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 3/120 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGIT 66 +VFD ETTGL+ D IIEI A+ + +++ P + ++ I Sbjct: 515 VVFDTETTGLNVFQDDIIEIAAIRIKGGEVVGEPLDLYIETDKPILPMLGDKENPMYAIY 574 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + S + + + HNA +D ++ LQR KD + I Sbjct: 575 HEKMSTGELLSPSDALQRFLAYVGTSPILGHNANYDYNILDNNLQRYCKDTMQAHDIRCF 634 >gi|326803581|ref|YP_004321399.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus urinae ACS-120-V-Col10a] gi|326651581|gb|AEA01764.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus urinae ACS-120-V-Col10a] Length = 1437 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 75/199 (37%), Gaps = 5/199 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL + + IIEIGAV++ + F FL P +S Sbjct: 421 YVIFDVETTGLSAVYNTIIEIGAVKMHKGNVVGE-FSEFLNPGHHLSSFTTELTGITDSM 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +P + Q +AHNA FDVGFI+A QR ++ I Sbjct: 480 VANARPEPEVMQDFLD---FCQGTILVAHNASFDVGFIDAAYQRNGLPTIENPVIDTLEL 536 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKH-GALLDSHLLSDVYIKMMVGGSQINFGFKT 187 LN+L K + +++ H + + L+ +++K + + + Sbjct: 537 ARYLYPHLKSFRLNTLSKHFNVSLEHHHRAIYDATSTGALAWIFVKEAKESHDMVYHDQL 596 Query: 188 NEDRFFKEEKKTVPNISLL 206 N D + K Sbjct: 597 NRDIGQGDAYKKGRPFHAT 615 >gi|268317061|ref|YP_003290780.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252] gi|262334595|gb|ACY48392.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252] Length = 616 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGL + D II IGAV ++ TF + P R S +++++HGI Sbjct: 424 VFDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEETFDQLVNP-RRPISLDSVRVHGIQPV 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 L+DKP + F+ ++ + HN FD+ FI + + Sbjct: 483 LLQDKPPIEEVLPRFYR--FARDTVLVGHNVAFDLKFIRQKEK 523 >gi|188586746|ref|YP_001918291.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351433|gb|ACB85703.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 864 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 79/217 (36%), Gaps = 9/217 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +VFD+ETTGLD+ D IIE+ A++ + F +L + + Sbjct: 499 KLVVFDVETTGLDTTKDEIIELAALKAGKDGVVDE-FHEYLRNSKPVGESFQVHGISDQV 557 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + KP S+ S + + + HN +D+ + + +++ L+ Sbjct: 558 LLEQGKPPEKSLASFTN---FIDDCDLVGHNVNYDITMVENQCKKLLNQDLELHGYDTVD 614 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 R + +L SLC+ I+ + H A+ D ++ ++ + Sbjct: 615 ISRRYFPRLEKYNLESLCEDLQIS--SKPTHRAMDDVEATFELLQILLEKIK-PGIEKRK 671 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224 + ++ + R K L R EL H Sbjct: 672 EYVNSYGDKFANLAIALNSWRRKTLTMRPP--ELLSH 706 >gi|71907536|ref|YP_285123.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] gi|71847157|gb|AAZ46653.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] Length = 453 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 5/106 (4%) Query: 7 MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR + F D+ETTG + +DRI EIG VE+ R +Q + P G + P +L GI Sbjct: 1 MRPLAFVDLETTGATATHDRITEIGIVEVDADGSV-REWQQLVNP-GMRIPPFIEQLTGI 58 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 +DE + D P F +I E +IAHNA+FD GF+ E + Sbjct: 59 SDEMVADAPPFEAIAGEVMKRLEG--RLFIAHNARFDYGFLKNEFK 102 >gi|319638605|ref|ZP_07993367.1| DNA polymerase III subunit [Neisseria mucosa C102] gi|317400354|gb|EFV81013.1| DNA polymerase III subunit [Neisseria mucosa C102] Length = 463 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 7/171 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + DRI E+ V T ++ + P R +L GI DE Sbjct: 22 VVVDLETTGGNFYQDRITEVALVRFEQGRAT--HYEQLVNP-CRSIPEFVARLTGIHDET 78 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ P F+ I ++ A +AHN++FD F+ E RI+ D + + T+ + Sbjct: 79 VKNAPVFADIAADLLPLLQG--AVVVAHNSRFDYTFLRHEFARIHTD--FAAPSLCTVQL 134 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +RR +P + L + + + Q Sbjct: 135 SRRLYPEFYKHSLDSIIERTGIQTANRHRAMTDVVALCDYLELSLTEKNHQ 185 >gi|134299597|ref|YP_001113093.1| DNA polymerase III subunit epsilon [Desulfotomaculum reducens MI-1] gi|134052297|gb|ABO50268.1| DNA polymerase III, epsilon subunit [Desulfotomaculum reducens MI-1] Length = 930 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 86/222 (38%), Gaps = 17/222 (7%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D+ET+GLD D IIEIG V+++D + +F + P G + +L GI D Sbjct: 3 NFVALDLETSGLDCLQDEIIEIGLVKMVDGKEI-DSFSTLIRPKGI-LPVKIKRLTGIKD 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L+D P + F + + HN KFD F++ +Q +PL + + Sbjct: 61 HELQDAPKLQEVLPVILQFIAD--LPLVGHNVKFDYDFLSTAVQSPLANPLYDTLELSKY 118 Query: 128 SIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + +S + L LC G I HR+ A + LL + + ++ + Sbjct: 119 LMPG----ASNHRLGYLCSYLGIDIPNQHRALDDARGAAMLLIHLLNQCEEMEPELIWQL 174 Query: 186 KTNEDRFFKEEKKTVPNIS-------LLKRDKPLFTRITKEE 220 + + +S ++ T+E+ Sbjct: 175 SQFLSKSGSLWHSVLETLSSRMIKMFPDRKITATIPGATEED 216 >gi|172057851|ref|YP_001814311.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum 255-15] gi|171990372|gb|ACB61294.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum 255-15] Length = 1431 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 7/197 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++IIE+ AV++ D ++ F+ F P S + L GITDE Sbjct: 414 FVVFDVETTGLSAMYNKIIELAAVKIYDGDVIDK-FEAFADPK-HLLSATTIDLTGITDE 471 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ KP + EF D + +AHNA FD+GF+NA L+ N + I Sbjct: 472 MVRGKPDPEQVVKEFMD--WAGGSILVAHNASFDIGFLNATLRSGNHEESTLPVIDTLEL 529 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L KR+ I H A+ D+ + +K++ ++ F KT+ Sbjct: 530 ARVLMPSLKNHRLNTLAKRF--DIELTQHHRAIYDAEATGYLMLKLLQMADEM-FNMKTH 586 Query: 189 EDRFFKEEKKTVPNISL 205 + K Sbjct: 587 LSLNREMGKDISRARPY 603 >gi|329940730|ref|ZP_08290010.1| exonuclease [Streptomyces griseoaurantiacus M045] gi|329300024|gb|EGG43922.1| exonuclease [Streptomyces griseoaurantiacus M045] Length = 336 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 8/163 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + + P P + +HG+T E Sbjct: 22 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTTVNPER---DPGPVWIHGLTSE 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + EF +AHNA FD I E R ++P R+ Sbjct: 78 ALEGAPLFHEVAGEFAARLTG--RVLVAHNAVFDWSMIAREYARAGQEPPVRQRLCTIAL 135 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P + L +L +G+ H AL D+ +L++ + Sbjct: 136 SKALALPLPNHKLETLAAHFGVVQRRA--HHALDDARVLAEAF 176 >gi|26554369|ref|NP_758303.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2] gi|26454379|dbj|BAC44707.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2] Length = 1458 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 5/195 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL D+IIE GA++ + + Q+F+ P K S + + I++E Sbjct: 421 YVIFDIETTGLSPYYDKIIEFGAIKYHKGVQV-ESIQMFINPE-EKISDKIFAITKISNE 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127 +KD + DF + + IAHN KFD+ F+N +L+ D + I Sbjct: 479 DVKDALKIKEALVKIKDFIGD--SVLIAHNGIKFDLPFLNCKLEENKMDIIKNPLIDTLQ 536 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + L + ++Y I H A D+ L +++ +M+ + Sbjct: 537 ISRAINEQIHGHSLGVIARKYKIDYDETQAHRADKDAEYLLNIWKRMLENQKLQDIKTLN 596 Query: 188 NEDRFFKEEKKTVPN 202 + + + N Sbjct: 597 EINSNLQNDFLRERN 611 >gi|308235755|ref|ZP_07666492.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14018] Length = 301 Score = 68.4 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 11/179 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGL + D IIEIG + + + +R + + P + L GIT++ Sbjct: 16 YCVLDTETTGLSAYYDEIIEIGILRVRNNEIVDR-YDQLIKP-SIEVDGFITALTGITND 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D PS SS+ ++ F +E + HN FD+ F+N + + + +DT+ Sbjct: 74 MLEDMPSISSVKNDVLSFISE--DIILGHNTSFDMRFLNEGFKEQLSN-----QYMDTMQ 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 AR+ +P ++ S H ++H AL D ++Y + + N + Sbjct: 127 FARKLYPELKHHRLS--DLTDYLGLHNNEHRALADCIATKELYDAVKSRMVEKNLAIED 183 >gi|302550499|ref|ZP_07302841.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] gi|302468117|gb|EFL31210.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] Length = 330 Score = 68.4 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 8/170 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + + P P + +HG+T E Sbjct: 23 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTMVNPER---DPGPVWIHGLTSE 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I EF +AHNA FD I E R ++ R+ Sbjct: 79 ALEGAPLFQDIAEEFTTRLEG--RVLVAHNAVFDWQMIAREYARAQREVPVRQRLCTIAL 136 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 P + L SL YG+ H AL D+ +L++ + + Sbjct: 137 SKELGLPLPNHKLESLAAHYGVVQRRA--HHALDDARVLAEAFQPSLRAA 184 >gi|260063517|ref|YP_003196597.1| putative DNA polymerase III subunit epsilon [Robiginitalea biformata HTCC2501] gi|88782961|gb|EAR14135.1| putative DNA polymerase III epsilon chain [Robiginitalea biformata HTCC2501] Length = 258 Score = 68.4 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 70/178 (39%), Gaps = 8/178 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG + DRI+E+ +++ + +K ++T+ + P G EA +HGITDE Sbjct: 11 FFDLETTGTNIATDRIVELAILKVFPNGNKESKTW--LVNP-GVPIPEEASAIHGITDEK 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + +P+F + E + + N L+ + + +D +I Sbjct: 68 VAGEPTFRELAREVYQMIQGCDLAGFNSNRFDIPLLAEELLRAGVDFDMKNAVSVDVQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + ++ H A D+ +V + + S++ + Sbjct: 128 FHK----MEKRTLAAAYQFYCGKELTDAHSATADTQATYEVLLSQLDRYSELTNNVQE 181 >gi|332668025|ref|YP_004450813.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM 1100] gi|332336839|gb|AEE53940.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis DSM 1100] Length = 463 Score = 68.4 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 7/174 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K + + D+ETTG + DRIIEI V + D ++ +++ + P L GI Sbjct: 2 KKKYAIIDVETTGGKASRDRIIEIAVV-IHDGNQILESWESLINPET-LIPWNITILTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+ + + P F + + + + A ++AHNA+FD FI E +R+ Sbjct: 60 NDQMVANAPKFYEVARKIVE--LTEGAIFVAHNARFDYSFIGEEFKRLGYTYTRKQLCTL 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 L+ + I ++++H A+ D V ++ Sbjct: 118 RLARQTLPGLYAYGLD---ALSRHFNIHNQARHRAMGDVQATIKVLEYILQHED 168 >gi|302338443|ref|YP_003803649.1| DNA polymerase III subunit epsilon [Spirochaeta smaragdinae DSM 11293] gi|301635628|gb|ADK81055.1| DNA polymerase III, epsilon subunit [Spirochaeta smaragdinae DSM 11293] Length = 210 Score = 68.4 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 40/97 (41%), Positives = 47/97 (48%), Gaps = 4/97 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD ETTGLDS DRI+EIGAV T TF + P G P + +HGITD+ Sbjct: 25 FVSFDFETTGLDSFRDRILEIGAVSWRQGK-TKETFSSLVRP-GIPVPPASTAVHGITDD 82 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 L D P F F +AHN FD GF Sbjct: 83 DLLDAPDEKGALVSFLRFIEG--KVAVAHNLPFDYGF 117 >gi|297584227|ref|YP_003700007.1| exonuclease RNase T and DNA polymerase III [Bacillus selenitireducens MLS10] gi|297142684|gb|ADH99441.1| Exonuclease RNase T and DNA polymerase III [Bacillus selenitireducens MLS10] Length = 233 Score = 68.4 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 68/174 (39%), Gaps = 6/174 (3%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 VFD+ETTG K DRI+ IG V++ + T+ TF F+ H + Sbjct: 53 VFDLETTGFFPQKQDRILSIGGVKIKNNEITDDTFYSFV---YYDQPISETIRHLTGIQE 109 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + F ++ +IAH+A + GF+ L R + I Sbjct: 110 EDVLNAPAEADVLTRFFAFAEDDLFIAHHAAHEKGFMQDALWRSFRATFQRRLIDTIFLT 169 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + +L + C+ + I +H AL D+ L ++++I + + Sbjct: 170 KLQPDLRDTAELEACCRYFNIE--PAGRHHALHDAKLAAELWIHSVNVMESMGI 221 >gi|269219422|ref|ZP_06163276.1| exonuclease, DNA polymerase III, epsilon subunit family [Actinomyces sp. oral taxon 848 str. F0332] gi|269211118|gb|EEZ77458.1| exonuclease, DNA polymerase III, epsilon subunit family [Actinomyces sp. oral taxon 848 str. F0332] Length = 206 Score = 68.4 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 24/44 (54%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50 M V D+ETTGL DRI+EIG V L + + +Q + P Sbjct: 1 MGYAVVDVETTGLSPVRDRIVEIGVVLLDESGEPEGEWQSLVNP 44 >gi|315652207|ref|ZP_07905202.1| DNA polymerase III PolC-type [Eubacterium saburreum DSM 3986] gi|315485513|gb|EFU75900.1| DNA polymerase III PolC-type [Eubacterium saburreum DSM 3986] Length = 237 Score = 68.4 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 73/205 (35%), Gaps = 10/205 (4%) Query: 7 MR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 MR + D+ETTG+ D+IIE+G +++++ S F + PN P + K+ Sbjct: 1 MRIKDYVAIDLETTGISVSKDKIIEVGLIKVIN-SHIEEMFSCIINPNM----PVSTKIL 55 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 +T + + I D + + + + + I Sbjct: 56 NLTGIDENEIKTARYIQDVIGDIVEFCDGFDLIGHNTIFDYSFIKKEANNAGLNFEKRGI 115 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + P + +L C +GI ++ H A D++ +Y +++ ++ Sbjct: 116 DTYKLCKKILPPYIQKNLTDACAYFGIE--RKNMHRAFSDAYFTHMLYQEILTNFKELEI 173 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKR 208 + + + K L++ Sbjct: 174 ISEIMKVKLKKNVPIRKRTKEDLQK 198 >gi|313672047|ref|YP_004050158.1| DNA polymerase iii, epsilon subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312938803|gb|ADR17995.1| DNA polymerase III, epsilon subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 201 Score = 68.4 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 10/173 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +VFD+ETTGL+ D+IIE+GA ++ + F + P+ + +HGIT Sbjct: 17 FVVFDLETTGLNPDNGDQIIEMGAFKIEEGFKLVRDPFHTMVKPDIFIPNE----IHGIT 72 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + LK+ P + +F D + + +AH A D+ F+ A ++ D +IDT Sbjct: 73 EMELKNAPDICTALYDFID--FSRGSVLVAHKASKDIAFLRAAMREYLIDDSFDFLVIDT 130 Query: 127 LSIARRKHPSSRNDLNSLC--KRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + ++R +P + K + S +H A+ D+ + +++KM+ Sbjct: 131 IKFSQRLYPDFKYHNLDYLIEKHHISINSKFKRHRAIYDAEATAKIFLKMIRK 183 >gi|227510250|ref|ZP_03940299.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189902|gb|EEI69969.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 1438 Score = 68.4 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 5/189 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL + DR+IE+ AV++ + + ++ F+ F+ P G S + L ITDE Sbjct: 419 YVVFDTETTGLSAIYDRVIELSAVKMKNSNVIDQ-FEEFIDP-GFHLSEQTTNLTSITDE 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S +F F DF + A + HN FD+GF+N R + + IIDTL+ Sbjct: 477 MVHGSKSEEEVFKLFRDFCED--AIVVGHNVTFDIGFMNTGYVRHGMPEI-KNPIIDTLT 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +AR +P+ R + + Y+ + + + Sbjct: 534 LARFLYPNMRGYRLNTLAKKFDVNLEHHHRAIYDAETTGHLNYLFLKDAEDRYGIVYHDE 593 Query: 189 EDRFFKEEK 197 + E Sbjct: 594 LNDHMTEND 602 >gi|227513179|ref|ZP_03943228.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577] gi|227083560|gb|EEI18872.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577] Length = 1438 Score = 68.4 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 5/189 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL + DR+IE+ AV++ + + ++ F+ F+ P G S + L ITDE Sbjct: 419 YVVFDTETTGLSAIYDRVIELSAVKMKNSNVIDQ-FEEFIDP-GFHLSEQTTNLTSITDE 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S +F F DF + A + HN FD+GF+N R + + IIDTL+ Sbjct: 477 MVHGSKSEEEVFKLFRDFCED--AIVVGHNVTFDIGFMNTGYVRHGMPEI-KNPIIDTLT 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +AR +P+ R + + Y+ + + + Sbjct: 534 LARFLYPNMRGYRLNTLAKKFDVNLEHHHRAIYDAETTGHLNYLFLKDAEDRYGIVYHDE 593 Query: 189 EDRFFKEEK 197 + E Sbjct: 594 LNDHMTEND 602 >gi|193213751|ref|YP_001994950.1| hypothetical protein Ctha_0031 [Chloroherpeton thalassium ATCC 35110] gi|193087228|gb|ACF12503.1| DNA polymerase III, epsilon subunit [Chloroherpeton thalassium ATCC 35110] Length = 578 Score = 68.4 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 10/206 (4%) Query: 9 KIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG L +N RIIEI A++ + + + + P ++ S + GIT+ Sbjct: 24 FAVVDLETTGGLKPEN-RIIEICAIKCRNGQEVG-MLESLVNPE-QQISYFISQYTGITN 80 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P S+ ++ +FF E ++AHN FD+GFIN EL+R L + Sbjct: 81 SMVDNAPVIQSLLTKVSEFFQE--TIFVAHNVPFDMGFINMELERNGYAKLTNRWLCTFR 138 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 R + +L L K +G I ++H A D + ++++ + + Sbjct: 139 LARRLLPTQQKKNLGDLAKYFG--IIVENRHRARGDCEATIKLLAELIILAQEQH--GVE 194 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF 213 + + K + N R Sbjct: 195 TAEELLSLQFKAIRNFKREPRHFSKI 220 >gi|306840939|ref|ZP_07473681.1| DNA polymerase III subunit epsilon [Brucella sp. BO2] gi|306289062|gb|EFM60324.1| DNA polymerase III subunit epsilon [Brucella sp. BO2] Length = 332 Score = 68.0 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 73/234 (31%), Gaps = 23/234 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ + IIEIGAV D F L + E ++ GI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE +K + D IAHNA FD F+ +R + + Sbjct: 134 TDEMVKGRTIPRDEL----DALIAGADIIIAHNAGFDRPFL----ERFSIAFANKPWACS 185 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178 I L L + G + + + +++ Sbjct: 186 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKITPFAELLKAS 245 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 + F ++ R K +T + ++EL+ + + Sbjct: 246 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 299 >gi|171317951|ref|ZP_02907125.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] gi|171096851|gb|EDT41725.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] Length = 205 Score = 68.0 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 8/173 (4%) Query: 7 MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+ + V D ETTGL DR EI + L D +R +Q + GR+ + + L G Sbjct: 1 MQTVAVLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLMN-AGRRIPSDVVALTG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+E + P S + E F N +AHNA FD F + Sbjct: 59 ITNEMIASAPPVSQVMKEAAAFV--GNHPVVAHNAGFDKRFWQ--AELGMLGMAAEHAFA 114 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 T+ +ARR +P +R+ S H A++D+ + S ++ ++ Sbjct: 115 CTMLVARRIYPHARSHRLSSLADMLRLPQTGRAHRAMVDAEIASHLWCRLQRD 167 >gi|115359655|ref|YP_776793.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD] gi|172064467|ref|YP_001812118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6] gi|115284943|gb|ABI90459.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD] gi|171996984|gb|ACB67902.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6] Length = 205 Score = 68.0 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 8/173 (4%) Query: 7 MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+ + V D ETTGL DR EI + L D +R +Q + GR+ + + L G Sbjct: 1 MQTVAVLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLMN-AGRRIPSDVVALTG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+E + P S + E F N +AHNA FD F + Sbjct: 59 ITNEMIASAPPVSQVMKEAAAFV--GNHPVVAHNAGFDKRFWQ--AELGMLGMAAEHAFA 114 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 T+ +ARR +P +R+ S H A++D+ + S ++ ++ Sbjct: 115 CTMLVARRIYPHARSHRLSSLADMLRLPQTGRAHRAMVDAEIASHLWCRLQRD 167 >gi|194015490|ref|ZP_03054106.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061] gi|194012894|gb|EDW22460.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061] Length = 240 Score = 68.0 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 17/173 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLC-PNGRKNSPEALKL 62 +V D+ETTGLD K D+IIEIGA+++ + F + GR L Sbjct: 6 YVVLDLETTGLDHKKDQIIEIGAIKIRLGGRVREFEEVSRFHTMVALEEGRDLPEFITNL 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT+E L+D P E +F + A +A NA FD+ FI+ + ++P R Sbjct: 66 TGITEEDLEDAPEEWDALDELQNFIGD--AIVVAQNAPFDLSFIS-------RGDIEPER 116 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T ++AR P L + KR GI+ H AL D +V+ + + Sbjct: 117 FYCTRAMARFVEPELSASLKDVTKRIGIS--LDGHHRALNDVEATIEVFRRYL 167 >gi|315646467|ref|ZP_07899585.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex V453] gi|315278110|gb|EFU41430.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex V453] Length = 961 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 6/177 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ V D ETTG + D II++G + + +R + ++ P G P L GI+ Sbjct: 1 MKFAVLDFETTG-NQSADEIIQVGLAIIEEDRSISRVYGTYVNP-GIPIPPFITGLTGIS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D PS + E ++ + HN FD F+ L R P + Sbjct: 59 DSDVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFSGRILDTM 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + S L + +G+ H A D+ + +K + ++ Sbjct: 117 HFLKICFPSLSSYQLGMVSSHFGLEHDRP--HQADSDALATAYALLKCLEEIDELPL 171 >gi|240143784|ref|ZP_04742385.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82] gi|257204219|gb|EEV02504.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82] Length = 228 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 70/179 (39%), Gaps = 6/179 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTN-RTFQVFLCPNGRKNSPEALKLHGI 65 + + FD ETTGLD + D+IIE+ A + + + F P G K + ++L I Sbjct: 6 KIVFFDTETTGLDPEKDQIIELAAALVTENGIELKIDAFCKL--PEGEKIPEKIVELTHI 63 Query: 66 -TDEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRI 123 D + F + + + +AHN +FD+ FI +R P P Sbjct: 64 TDDMLADKGIDYREACRIFCNMLHSDSEVLLVAHNIQFDLLFILEMFKRCGMVPKAPKLR 123 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + + + L + + YG+ ++ H A+ D L +V M + Sbjct: 124 ALDSLTVYKDRAAYPHKLANAIEHYGLADKVQNSHRAIDDVLALYEVTKAMSEERDDLT 182 >gi|227524394|ref|ZP_03954443.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290] gi|227088625|gb|EEI23937.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290] Length = 1438 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 5/189 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL + DR+IE+ AV++ + + ++ F+ F+ P G S + L ITDE Sbjct: 419 YVVFDTETTGLSAIYDRVIELSAVKMKNSNVIDQ-FEEFIDP-GFHLSEQTTNLTSITDE 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S +F F DF + A + HN FD+GF+N R + + IIDTL+ Sbjct: 477 MVHGSKSEEEVFKLFRDFCED--AIVVGHNVTFDIGFMNTGYVRHGMPEI-KNPIIDTLT 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +AR +P+ R + + Y+ + + + Sbjct: 534 LARFLYPNMRGYRLNTLAKKFDVNLEHHHRAIYDAETTGHLNYLFLKDAEDRYGIVYHDE 593 Query: 189 EDRFFKEEK 197 + E Sbjct: 594 LNDHMTEND 602 >gi|170697844|ref|ZP_02888929.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] gi|170137231|gb|EDT05474.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] Length = 205 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 8/173 (4%) Query: 7 MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+ + V D ETTGL DR EI + L D +R +Q + GR+ + + L G Sbjct: 1 MQTVAVLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLMN-AGRRIPSDVVALTG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+E + P S + E F N +AHNA FD F + Sbjct: 59 ITNEMIASAPPVSQVMKEAAAFV--GNHPLVAHNAGFDKRFWQ--AELGMLGMAAEHAFA 114 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 T+ +ARR +P +R+ S H A++D+ + S ++ ++ Sbjct: 115 CTMLVARRIYPHARSHRLSSLADMLRLPQTGRAHRAMVDAEIASHLWCRLQRD 167 >gi|251796155|ref|YP_003010886.1| hypothetical protein Pjdr2_2143 [Paenibacillus sp. JDR-2] gi|247543781|gb|ACT00800.1| DNA polymerase III, epsilon subunit [Paenibacillus sp. JDR-2] Length = 244 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 7/168 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTG D II GAV + R F + P R+ + ++L GIT+ Sbjct: 61 VVFDLETTGFYPSNGDEIISFGAVHMKGLELDESRQFYSLVNPK-RRIPRQIIELTGITN 119 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++D P + +F +F IAH A D F+NA L R +K L+ + L Sbjct: 120 EMVQDAPDLMQVLHDFMEFI--GRRLLIAHAAGHDKQFLNAALWRTSKVSLNHRVLDTML 177 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + L+ L + GI I +H AL DS + + ++ + + Sbjct: 178 VAKWLEPKRASYALDDLLEDCGIPI--TERHHALQDSLMTAKLWQQFL 223 >gi|163791589|ref|ZP_02185990.1| DNA polymerase III, alpha subunit, Gram-positive type [Carnobacterium sp. AT7] gi|159873138|gb|EDP67241.1| DNA polymerase III, alpha subunit, Gram-positive type [Carnobacterium sp. AT7] Length = 1395 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 75/198 (37%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + IIE+ AV++ + +F+ F+ P + ++ Sbjct: 426 YVVFDVETTGLSAVYNSIIELSAVKMHKGNII-ESFEQFIDPG---HPLSQTTINLTGIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S ++ +AHNA FD+GF+N + N + I Sbjct: 482 DEMVQGSKSEEEVLTLFKEFAGDSILVAHNASFDMGFLNTSNAKHNIPDAENPVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKT 187 + LN+L K+YG+ H A+ D+ ++ + + + F+ Sbjct: 542 SRFLHPQFKSHRLNTLAKKYGVN--LEQHHRAIFDAETTGHLCWVFLKEAREEHDIHFQD 599 Query: 188 NEDRFFKEEKKTVPNISL 205 + E Sbjct: 600 QLNEHTGEGDAYKRARPF 617 >gi|239502706|ref|ZP_04662016.1| hypothetical protein AbauAB_10367 [Acinetobacter baumannii AB900] Length = 179 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 61/163 (37%), Gaps = 3/163 (1%) Query: 12 FDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D ETTGL+ + D+IIEI ++ F + P R P+A +HGI+ L Sbjct: 8 VDTETTGLEVENGDKIIEIALIKYDLDGAKLEEFVQRIDPE-RNIDPKAQAVHGISYSDL 66 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P F I E + +AHN FD FI EL+R P S Sbjct: 67 IGCPKFVDIAEEV-ASIVNHASLLVAHNFAFDGPFIATELKRAGMTPKKVSSFCTMEYGR 125 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L LC G+ + H A D ++ + K Sbjct: 126 WATFDGKYPKLADLCFSLGVEYDASAAHAASYDVDVMMQCFFK 168 >gi|170733343|ref|YP_001765290.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3] gi|169816585|gb|ACA91168.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia MC0-3] Length = 212 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 83/213 (38%), Gaps = 8/213 (3%) Query: 4 KNKMRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + M+ + V D ETTGL DR EI + L D +R FQ + GR+ + + Sbjct: 5 NSTMQTVAVLDFETTGLSPNLGDRATEIAVILLRDGQVVDR-FQSLMN-AGRRIPSDVVA 62 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT++ + P S + E F + +AHNA FD F + Sbjct: 63 LTGITNDMIATAPPASEVMKEAAAFVGK--HAVVAHNAGFDKRFWQ--SELGMLGMSADH 118 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 T+ +ARR +P +R+ S H A++D+ + ++ ++ S+ Sbjct: 119 AFACTMLVARRIYPDARSHRLSSLAEMLRLPQTGRAHRAMVDAEMAGHLWCRLQQDISRT 178 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214 + + + + T + + R Sbjct: 179 YGLDRIDHALMSQVQVTTKAKVPMYLRSLVRVH 211 >gi|107028837|ref|YP_625932.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116690004|ref|YP_835627.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] gi|105898001|gb|ABF80959.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116648093|gb|ABK08734.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] Length = 212 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 8/173 (4%) Query: 4 KNKMRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + M+ + V D ETTGL DR EI + L + +R FQ + GR+ + + Sbjct: 5 NSTMQTVAVLDFETTGLSPNLGDRATEIAVILLRNGQVVDR-FQSLMN-AGRRIPSDVVA 62 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT++ + P S + E F + +AHNA FD F + Sbjct: 63 LTGITNDMIATAPPASEVMKEAAAFVGK--HAVVAHNAGFDKRFWQ--SELGMLGMSADH 118 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ +ARR +P +R+ S H A++D+ + ++ ++ Sbjct: 119 AFACTMLVARRIYPDARSHRLSSLAEMLRLPQTGRAHRAMVDAEMAGHLWCRL 171 >gi|320353730|ref|YP_004195069.1| DNA polymerase III, subunit epsilon [Desulfobulbus propionicus DSM 2032] gi|320122232|gb|ADW17778.1| DNA polymerase III, epsilon subunit [Desulfobulbus propionicus DSM 2032] Length = 218 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTG + DR IE+GAV + +R FQ + P G S +L GI+++ Sbjct: 7 IVLDFETTGHSPNRGDRPIEVGAVRIEHDRIVDR-FQALMNP-GFTISWFIERLTGISND 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + + F D+ + +AHNA FD F++AEL I + + + T+ Sbjct: 65 LIAHAPPCEEVMNRFADWMGD--LPLVAHNAGFDRAFLDAELALIGRH--QSNPMACTVL 120 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +RR P S N + + + + H AL D+ + V+I M Sbjct: 121 ASRRLFPESPNHKLATLVNHLGIFTDGTFHRALADAEMTGHVWIAMT 167 >gi|311114663|ref|YP_003985884.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019] gi|310946157|gb|ADP38861.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019] Length = 307 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 11/179 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGL + D IIEIG + + + +R + + P + L GIT++ Sbjct: 22 YCVLDTETTGLSAYYDEIIEIGILRVRNNEIVDR-YDQLIKP-SIEVDGFITALTGITND 79 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D PS SS+ ++ F +E + HN FD+ F+N + + + +DT+ Sbjct: 80 MLEDMPSISSVKNDVLSFISE--DIILGHNTSFDMRFLNEGFKEQLSN-----QYMDTMQ 132 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 AR+ +P ++ S H ++H AL D ++Y + + N + Sbjct: 133 FARKLYPELKHHRLS--DLTDYLGLHNNEHRALADCIATKELYDAVKSRMVEKNLAIED 189 >gi|84496154|ref|ZP_00995008.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649] gi|84382922|gb|EAP98803.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649] Length = 572 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 65/198 (32%), Gaps = 4/198 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG I EIGAV++ FQ F+ P G+ L GITD Sbjct: 20 FVVVDLETTGGSPSECGITEIGAVKVRAGEVLGE-FQTFVNP-GQPIPAFISVLTGITDA 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F + + +AHNA FDV F+ A R +D + Sbjct: 78 MVRDAPRVEPALVAFLE--FAAGSVLVAHNAGFDVSFLKAACGRAERDWPSFPVVDTVHL 135 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + H AL D+ DV ++ + Sbjct: 136 ARQLVTRDEAPNHRLGSLAVLFGATTTPDHRALHDARATVDVLHGLIARVGSLGVHSLEE 195 Query: 189 EDRFFKEEKKTVPNISLL 206 + L Sbjct: 196 LKAYSSRVPAATRRKRHL 213 >gi|71907264|ref|YP_284851.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] gi|71846885|gb|AAZ46381.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] Length = 721 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 8/166 (4%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGL+ D II+IGA +++ TF + P ++ +HGIT++ Sbjct: 533 VFDTETTGLEPSNGDEIIQIGAARIVNNRLLRQETFNQIVDPEIPLKPA-SIPIHGITED 591 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +P+ + F +F + IAHNA FD+ F+ + +R N P LS Sbjct: 592 MVRGQPNIDVVLPAFHEFCED--TVLIAHNAAFDMRFLQLKEERTNIRFTQPVLDTLLLS 649 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + S L + + I+ +H AL D+ +V++K+ Sbjct: 650 AVVHPNQESHKLDVILER---LGITIGKRHNALEDALATGEVFLKL 692 >gi|254712763|ref|ZP_05174574.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1] gi|254715832|ref|ZP_05177643.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1] gi|261217593|ref|ZP_05931874.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1] gi|261320470|ref|ZP_05959667.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M644/93/1] gi|260922682|gb|EEX89250.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1] gi|261293160|gb|EEX96656.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M644/93/1] Length = 329 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 54/227 (23%), Gaps = 12/227 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ + IIEIGAV D F L + E + Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITGITDE 133 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + D N + F A + + Sbjct: 134 MVKGRTIPRDELDALIAEADIIIAHN---AGFDRPFLERLSIAFANKPWACSVKEIDWTA 190 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + S + + +++ + Sbjct: 191 RGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTP-FAELLKASQRARMRI 249 Query: 186 KTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 F ++ R K +T + ++EL+ + + Sbjct: 250 YAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 296 >gi|145219710|ref|YP_001130419.1| DNA polymerase III, epsilon subunit [Prosthecochloris vibrioformis DSM 265] gi|145205874|gb|ABP36917.1| DNA polymerase III, epsilon subunit [Chlorobium phaeovibrioides DSM 265] Length = 221 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 8/182 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 R +VFD ETTG D +NDR+I IGAV L + T +F+V + G + Sbjct: 33 RFVVFDTETTGFDLQNDRVISIGAVALEGSAITIADSFEVLVRQPGVGQKESVSVHGLLK 92 Query: 67 DE-----FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + +D + + + + +A + L D + Sbjct: 93 KDIASGVSERDGVTSFLDYIGNSILVAQHASFDVAMLNRLLWELFRIRLFNGVVDTASLA 152 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + ++ H + L+ LC+RYGI +H + D++L + + +++ G Sbjct: 153 KRLEKGPYHNLAHKAGEYRLDHLCQRYGIR--LHDRHTSAGDAYLTAQLLQRLLAKGRTA 210 Query: 182 NF 183 Sbjct: 211 GI 212 >gi|156368138|ref|XP_001627553.1| predicted protein [Nematostella vectensis] gi|156214466|gb|EDO35453.1| predicted protein [Nematostella vectensis] Length = 275 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 9/115 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCP--NGRKNS 56 MI +N V D+ETTGL NDRI++I V++ T ++ ++ P + K Sbjct: 20 MIPRNAT-YCVLDVETTGLSKLNDRIVQIACVKV---KPTGDKESWMSYINPCMDREKQL 75 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 K+H ++ + L KP FS I W F +A+N +D + E + Sbjct: 76 AGGYKVHHLSPDMLLKKPKFSEIVESLWRFLCGAEY-LVAYNCLYDWDMLCQEFR 129 >gi|326333554|ref|ZP_08199794.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] gi|325948663|gb|EGD40763.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] Length = 580 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 45/202 (22%), Positives = 66/202 (32%), Gaps = 5/202 (2%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG I EIGAV++ FQ + P+ P L GIT+ Sbjct: 46 VVDLETTGNSPDNGGMITEIGAVKVRGGEVLGE-FQTLVNPHT-GIPPSIAVLTGITNSM 103 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P+ S+ F + + +AHNA FDVGF+ + + + Sbjct: 104 VASSPTIESVLPAFLE--FAEGCVLVAHNAPFDVGFLKHFAAKQERPWPRFEVLDTVKIA 161 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 R + H AL D+ DV MM + + Sbjct: 162 RRVITRDEAPNHKLGSLARVFGSPTTPNHRALQDARATVDVLHGMMERLGNLGVLTLEDL 221 Query: 190 DRFFKEEKKTVPNISLLKRDKP 211 F + L D P Sbjct: 222 AAFSAKVTTAQRKKRHLAEDLP 243 >gi|319651314|ref|ZP_08005444.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp. 2_A_57_CT2] gi|317397094|gb|EFV77802.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp. 2_A_57_CT2] Length = 933 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + +V D+ETTG K D+II+ AV + + T + + P + P +L G++ Sbjct: 4 KYVVVDLETTGNAPKKGDKIIQFAAVVIENGKIT-EEYSSLVNPE-QSIPPFIEELTGLS 61 Query: 67 DEFLKDKPSF 76 DE +++ P F Sbjct: 62 DEMVENAPLF 71 >gi|197294585|ref|YP_001799126.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma australiense] gi|171853912|emb|CAM11875.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma australiense] Length = 1530 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 5/179 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG S D+IIEI V++ K FQ + P K S + + ITD+ Sbjct: 450 YVVFDLETTGFSSTKDKIIEIAGVKIKHGKKIQE-FQALINPQ-EKLSQTIINITNITDD 507 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ K + + +F +F +N +AHNA FD+ F+ +++ + P +IDT++ Sbjct: 508 MLEGKNTIDQVLPDFLNFI--ENCILVAHNATFDITFLKEKIKELGIAY-KPQPVIDTMT 564 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +++R + + H AL D++ + V+IKM+ S + K Sbjct: 565 LSQRFFSEFLKYFSLKRLATVFKVKMEEHHRALSDANTTAQVFIKMIDQLSDASKNDKN 623 >gi|161870374|ref|YP_001599545.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 053442] gi|161595927|gb|ABX73587.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 053442] Length = 187 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 5/172 (2%) Query: 74 PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK 133 P F+ + + DF + + + DTL++AR Sbjct: 15 PPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVTDTLAMAREM 74 Query: 134 HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFF 193 P + L++LC R+ + S R HGAL+D LL +VY+ M + E Sbjct: 75 FPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL-----MGEAAEE 129 Query: 194 KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245 K E K V + + K R + EL H + + LG+ IW + ++ Sbjct: 130 KMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIWRKEAVPSE 181 >gi|226307078|ref|YP_002767038.1| DNA polymerase III epsilon subunit [Rhodococcus erythropolis PR4] gi|226186195|dbj|BAH34299.1| putative DNA polymerase III epsilon subunit [Rhodococcus erythropolis PR4] Length = 586 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 70/204 (34%), Gaps = 4/204 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + D I EIGAV++ + P GR P ++L GIT Sbjct: 41 FVVVDLETTGGSADQDSITEIGAVKIRGGEVLGEM-ATLVDP-GRSIPPYIVELTGITTA 98 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + F + + A +AHNA FD+GF+ A R + + Sbjct: 99 MLIGAPPIERVLPAFLE--FAEGAVLVAHNAPFDIGFLKAAASRSARPWPSFRVLCTVKL 156 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R + + ++ + H AL D+ DV ++ + Sbjct: 157 ARRVLTRDEAPSVKLSALAHLFQVTTQPTHRALDDARATVDVLHGLIDRVGNQGVHSYSE 216 Query: 189 EDRFFKEEKKTVPNISLLKRDKPL 212 + + P Sbjct: 217 LVDYLPNISSHQRAKRSFAANLPR 240 >gi|172040912|ref|YP_001800626.1| putative exonuclease [Corynebacterium urealyticum DSM 7109] gi|171852216|emb|CAQ05192.1| putative exonuclease [Corynebacterium urealyticum DSM 7109] Length = 270 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 4/98 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+ETTGL+ DR+IEI + + S +F L P E+ ++G+ D Sbjct: 90 RCAVVDLETTGLEPATDRVIEIAVLTVEHGSIVG-SFHCLLNPEC-SIPGESSNINGLRD 147 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + + + P+F+ + E N + HN KFDVGF Sbjct: 148 DDVANSPTFAEVAQELLPHV--LNRTLVGHNVKFDVGF 183 >gi|282881940|ref|ZP_06290585.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B] gi|281298215|gb|EFA90666.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B] Length = 298 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 26/232 (11%) Query: 1 MIRKNKMRKI-----VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M KN ++I V D ETTGL S D IIEIG +++ D +R + + P+ + Sbjct: 1 MANKNYTKQIINDYCVLDTETTGLSSYYDEIIEIGILKVRDNKIVDR-YSQLIKPDY-EI 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 L GIT+E +K+ P+ + + S+ F + I HN FD+ F+N Sbjct: 59 DSFITSLTGITNEMVKEMPAINFVMSDVLSFIGK--DVIIGHNTSFDIRFLN-----AGF 111 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + ++ +DT+ AR+ P ++ S ++H ++ D ++Y + Sbjct: 112 NIELDNKYMDTMQFARKLFPELKHHRLS--DLTSYLGLSNNEHRSIADCIATKELYDSIK 169 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 ++ G + + K T+ E+DE + Sbjct: 170 DTMTKRGLGIQDLWVKSNHGGKGID----------IKSIHPTEVEIDEDNFF 211 >gi|85057593|ref|YP_456509.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom phytoplasma AYWB] gi|84789698|gb|ABC65430.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom phytoplasma AYWB] Length = 1572 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 96/194 (49%), Gaps = 5/194 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D+IIEI +++ + +K FQ F+ P +K + + ITDE Sbjct: 481 YVVFDLETTGLSNVRDKIIEIAGIKIKNGNKIGE-FQKFIDPQ-QKLTKTITNITNITDE 538 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ + + + +F ++ +AHNA FDV F+ + + + L+P IIDT++ Sbjct: 539 MLQGQQTIDQVLPQFLA--FAKDCVLVAHNASFDVDFLKEKAKELKIS-LEPKPIIDTMA 595 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +++R + + + H AL D+ S+++IKM+ + K Sbjct: 596 LSQRYFSNLLKYFSLKRLATVFKVKLEDHHRALADATATSEIFIKMIDQLADPTKDPKNE 655 Query: 189 EDRFFKEEKKTVPN 202 + F E ++ + + Sbjct: 656 QVINFFELQEKIDH 669 >gi|228914217|ref|ZP_04077833.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845421|gb|EEM90456.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 927 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 71/173 (41%), Gaps = 8/173 (4%) Query: 13 DIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG K D+I +I AV + D F F+ P R+ P +L GI + + Sbjct: 2 DLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPK-REIPPFITELTGIDESMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K P F + + A ++AHN FD F+ EL++ + ++ Sbjct: 60 KQAPLFEDVAPMVVELLQG--AAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVELAQ 117 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L K++ + H A D+ ++++++ + ++ Sbjct: 118 ILLPTADSYKLRDLAKQHELEH--DQPHRADSDALATAELFLQFLNEIEKLPL 168 >gi|282858994|ref|ZP_06268131.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010] gi|282588223|gb|EFB93391.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010] Length = 894 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 75/236 (31%), Gaps = 15/236 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGIT 66 +VFD ETTGLD D IIEI A+++ + +++ P +K + L+ I Sbjct: 513 VVFDTETTGLDVFTDDIIEISAIKIKEGKIVGEPLDLYIYTDKPILQKLGTKENPLYEIY 572 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + L + + N+ I HN +D ++ L+R D +D Sbjct: 573 HKKLASGELLKANDALNKFIEFVDNSTLIGHNINYDYHILDNCLKRYANDCMDNHSYKYF 632 Query: 127 LSIARRK------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 S+ + L + GI S + +V Q Sbjct: 633 DSLKLIRLLEPSLRSYKLEYLLERFQLEGINSHQSIDDVKATISLINYCADKAQLVVEKQ 692 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL------DEHDKTIQT 230 ++F + + + I + T E + H+ + Sbjct: 693 MDFLNHKQVFKVANKLRAYYGEIYKEAKASLYEIYSTAEPILITSLVKAHNAFVAD 748 >gi|229490475|ref|ZP_04384316.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis SK121] gi|229322765|gb|EEN88545.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis SK121] Length = 608 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 70/204 (34%), Gaps = 4/204 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + D I EIGAV++ + P GR P ++L GIT Sbjct: 63 FVVVDLETTGGSADQDSITEIGAVKIRGGEVLGEM-ATLVDP-GRSIPPYIVELTGITTA 120 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + F + + A +AHNA FD+GF+ A R + + Sbjct: 121 MLIGAPPIERVLPAFLE--FAEGAVLVAHNAPFDIGFLKAAASRSARPWPAFRVLCTVKL 178 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R + + ++ + H AL D+ DV ++ + Sbjct: 179 ARRVLTRDEAPSVKLSALAHLFQVTTQPTHRALDDARATVDVLHGLIDRVGNQGVHSYSE 238 Query: 189 EDRFFKEEKKTVPNISLLKRDKPL 212 + + P Sbjct: 239 LVDYLPNISSHQRAKRSFAANLPR 262 >gi|294853961|ref|ZP_06794633.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026] gi|294819616|gb|EFG36616.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026] Length = 332 Score = 67.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 23/234 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ + IIEIGAV D F L + E ++ GI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE +K + D + IAHNA FD F+ +R++ + Sbjct: 134 TDEMVKGRTIPRDEL----DALIAEADIIIAHNAGFDRPFL----ERLSIAFANKPWACS 185 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178 I L L + G + + + +++ Sbjct: 186 VKEIDWTVRGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 245 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 + F ++ R K +T + ++EL+ + + Sbjct: 246 QRARMRIYAENSPFEMKDHLKARGYRWSDGKDGRPKSWWTEVGEDELEAELEYL 299 >gi|160937823|ref|ZP_02085182.1| hypothetical protein CLOBOL_02715 [Clostridium bolteae ATCC BAA-613] gi|158439262|gb|EDP17015.1| hypothetical protein CLOBOL_02715 [Clostridium bolteae ATCC BAA-613] Length = 245 Score = 67.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 79/217 (36%), Gaps = 15/217 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D+ETTGL+++ D+I EI A+ + D R F + P GR+ L GITD+ Sbjct: 5 YIALDLETTGLEARLDKITEIAALRVEDGRVEER-FVTLVNP-GRQLGERITALTGITDD 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + F N + HN FD F+ + LD R Sbjct: 63 MVKDAPVIEDTIGDVVRFC--GNLPLLGHNILFDYAFLK---RAAVNSGLDFEREGIDTL 117 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R N C +S + H A D+ +Y MM + + Sbjct: 118 GICRLFMPEDVKRNLTCACSFYEVSQSAAHRAQADAEAAHGLYQVMMARHGEEHPEAFAA 177 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 + +K +++ KR K + L H Sbjct: 178 KPLIYKAKREQ----PATKRQKEYLHDL----LKCHR 206 >gi|319649890|ref|ZP_08004041.1| hypothetical protein HMPREF1013_00645 [Bacillus sp. 2_A_57_CT2] gi|317398470|gb|EFV79157.1| hypothetical protein HMPREF1013_00645 [Bacillus sp. 2_A_57_CT2] Length = 242 Score = 67.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 6/173 (3%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 VFDIETTG K D+II IGAV+++ + +F + S E +L G+++ Sbjct: 60 VFDIETTGFYPDKGDQIISIGAVKIIKGKVSEDSFYSLARFE-KPLSNEIKELTGLSEAD 118 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ P S + F +F + +AH+A + F+ ++ + P + + Sbjct: 119 LEKAPPLSEVLISFLEFVKD--MPLVAHHANHEKSFMQHSCWKLFRTPFKYRILDTSFLY 176 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 H S L LC+ Y +I + +H AL D+ L + ++ +++ ++ Sbjct: 177 RIADHNKSFWRLEDLCEFY--SIPVKDRHHALGDAKLTALLWCRLIEEVHKLG 227 >gi|138894977|ref|YP_001125430.1| hypothetical protein GTNG_1315 [Geobacillus thermodenitrificans NG80-2] gi|134266490|gb|ABO66685.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] Length = 242 Score = 67.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 63/177 (35%), Gaps = 9/177 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++ D+ETTG + D I+ + A + ++ T T+ + P + L GI Sbjct: 62 FVIIDMETTGFSPQQGDEILAMAAAKTVNGLVTG-TYMTLVKPE-KPIPEHISDLTGIEA 119 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P + F F + + ++ D+ F+ L R + + Sbjct: 120 KDVVFAPPLAEALRTFVPFISA--GVLVGYHIGHDLSFLRHVLWRHYRQKWSWRFVDMQP 177 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 ++ +HP D C I +H A D + ++ ++ ++ Sbjct: 178 IVSLVRHPCPTLDDALAC----YGIDCPRRHTADGDVEAMVKLWAILLGELRELGIE 230 >gi|226325409|ref|ZP_03800927.1| hypothetical protein COPCOM_03214 [Coprococcus comes ATCC 27758] gi|225206152|gb|EEG88506.1| hypothetical protein COPCOM_03214 [Coprococcus comes ATCC 27758] Length = 231 Score = 67.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 73/218 (33%), Gaps = 8/218 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ + FD+ETTGLD + IIEIGA+++ D F F+ P + Sbjct: 1 MLKS----YVCFDLETTGLDPLYNEIIEIGALKVRDGK-VAERFMEFIHPQEEISPMITN 55 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + +P+ + I ++ I HN FD F+ + + Sbjct: 56 LTGITNEMVANARPADAVISDFLE---FCEDDVLIGHNVGFDYSFMKSGASNLGLTFEKF 112 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ K S++ + + + L + L Sbjct: 113 GIDTFKIAQRTLKSLPSKSLSSLCEYYQIENKAAHRAYYDALATAKLYQTLAHYFENEDP 172 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 F K + K + T ++LL+R ++ + Sbjct: 173 SLFKPKQLTYKIKKVQPATAKQVALLQRLCSQKKKVPE 210 >gi|62185003|ref|YP_219788.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3] gi|62148070|emb|CAH63824.1| DNA polymerase III, epsilon chain [Chlamydophila abortus S26/3] Length = 228 Score = 67.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 7/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG DRIIEI A ++ T +F ++ P EA K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRIIEIAA---YNH-ITKESFVTYVNPE-IPIPEEASKIHGITTST 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P F + F +F +N FD + E +R +PL I Sbjct: 60 VISAPKFPEAYKHFCEFCGNDAVLVAHNNDSFDFPLMEKECRRHALEPLSLKTIDSLKWA 119 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + +++L L + YG H AL D L +V+ ++ Sbjct: 120 QKYRPDLPKHNLQYLRQVYGFA--ENQAHRALDDVITLHNVFSALIGD 165 >gi|256058832|ref|ZP_05449048.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33] gi|261322770|ref|ZP_05961967.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33] gi|261298750|gb|EEY02247.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33] Length = 332 Score = 67.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 62/227 (27%), Gaps = 9/227 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ + IIEIGAV D F L + E ++ GI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE +K + + A + F A + + Sbjct: 134 TDEMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLERLSIAFANKPWACSVKEIDWTA 193 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + S + + +++ + Sbjct: 194 RGFEGTKLGYLIGQSGYFHSGHRAEDDCQALLAVLKGKSGKTTP-FAELLKASQRARMRI 252 Query: 186 KTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 F ++ R K +T + ++EL+ + + Sbjct: 253 YAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 299 >gi|256015766|ref|YP_003105775.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915] gi|255998426|gb|ACU50113.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915] Length = 332 Score = 67.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 23/234 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ + IIEIGAV D F L + E ++ GI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE +K + D + IAHNA FD F+ +R++ + Sbjct: 134 TDEMVKGRTIPRDEL----DALIAEADIIIAHNAGFDRPFL----ERLSIAFANKPWACS 185 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178 I L L + G + + + +++ Sbjct: 186 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 245 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 + F ++ R K +T + ++EL+ + + Sbjct: 246 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 299 >gi|254700203|ref|ZP_05162031.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513] gi|261750696|ref|ZP_05994405.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5 str. 513] gi|261740449|gb|EEY28375.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5 str. 513] Length = 332 Score = 67.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 23/234 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ + IIEIGAV D F L + E ++ GI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE +K + D + IAHNA FD F+ +R++ + Sbjct: 134 TDEMVKGRTIPRDEL----DALIAEADIIIAHNAGFDRPFL----ERLSIAFANKPWACS 185 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178 I L L + G + + + +++ Sbjct: 186 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 245 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 + F ++ R K +T + ++EL+ + + Sbjct: 246 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 299 >gi|268679463|ref|YP_003303894.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum deleyianum DSM 6946] gi|268617494|gb|ACZ11859.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum deleyianum DSM 6946] Length = 203 Score = 67.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50 +VFD ETTGL+ K D I+ IGAV++ + + F++F+ P Sbjct: 32 VVFDTETTGLNPKKDEILSIGAVKVRGNKILMSEKFELFVKP 73 >gi|225686761|ref|YP_002734733.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457] gi|256262103|ref|ZP_05464635.1| exonuclease [Brucella melitensis bv. 2 str. 63/9] gi|225642866|gb|ACO02779.1| Exonuclease RNase T and DNA polymerase III [Brucella melitensis ATCC 23457] gi|263091793|gb|EEZ16124.1| exonuclease [Brucella melitensis bv. 2 str. 63/9] gi|326411169|gb|ADZ68233.1| DNA polymerase III subunit epsilon [Brucella melitensis M28] gi|326554460|gb|ADZ89099.1| DNA polymerase III subunit epsilon [Brucella melitensis M5-90] Length = 332 Score = 67.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 23/234 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ + IIEIGAV D F L + E ++ GI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE +K + D + IAHNA FD F+ +R++ + Sbjct: 134 TDEMVKGRTIPRDEL----DALIAEADIIIAHNAGFDRPFL----ERLSIAFANKPWACS 185 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178 I L L + G + + + +++ Sbjct: 186 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 245 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 + F ++ R K +T + ++EL+ + + Sbjct: 246 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 299 >gi|23500730|ref|NP_700170.1| DNA polymerase III subunit epsilon [Brucella suis 1330] gi|161621054|ref|YP_001594940.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365] gi|254703325|ref|ZP_05165153.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686] gi|260567746|ref|ZP_05838215.1| exonuclease [Brucella suis bv. 4 str. 40] gi|261753952|ref|ZP_05997661.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3 str. 686] gi|23464383|gb|AAN34175.1| exonuclease, putative [Brucella suis 1330] gi|161337865|gb|ABX64169.1| Exonuclease RNase T and DNA polymerase III [Brucella canis ATCC 23365] gi|260154411|gb|EEW89492.1| exonuclease [Brucella suis bv. 4 str. 40] gi|261743705|gb|EEY31631.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3 str. 686] Length = 332 Score = 67.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 23/234 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ + IIEIGAV D F L + E ++ GI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE +K + D + IAHNA FD F+ +R++ + Sbjct: 134 TDEMVKGRTIPRDEL----DALIAEADIIIAHNAGFDRPFL----ERLSIAFANKPWACS 185 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178 I L L + G + + + +++ Sbjct: 186 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 245 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 + F ++ R K +T + ++EL+ + + Sbjct: 246 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 299 >gi|62317837|ref|YP_223690.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str. 9-941] gi|83269816|ref|YP_419107.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar Abortus 2308] gi|148558112|ref|YP_001257920.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840] gi|189023090|ref|YP_001932831.1| DNA polymerase III subunit epsilon [Brucella abortus S19] gi|254690675|ref|ZP_05153929.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str. 870] gi|254696020|ref|ZP_05157848.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str. Tulya] gi|254699129|ref|ZP_05160957.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str. 86/8/59] gi|254705536|ref|ZP_05167364.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M163/99/10] gi|254710765|ref|ZP_05172576.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94] gi|254732573|ref|ZP_05191151.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str. 292] gi|256029148|ref|ZP_05442762.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M292/94/1] gi|256043877|ref|ZP_05446797.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. Rev.1] gi|256111058|ref|ZP_05452120.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] gi|256157340|ref|ZP_05455258.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1] gi|256253680|ref|ZP_05459216.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94] gi|256255857|ref|ZP_05461393.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str. C68] gi|260167759|ref|ZP_05754570.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99] gi|260545071|ref|ZP_05820892.1| exonuclease [Brucella abortus NCTC 8038] gi|260565052|ref|ZP_05835537.1| exonuclease [Brucella melitensis bv. 1 str. 16M] gi|260756251|ref|ZP_05868599.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6 str. 870] gi|260760381|ref|ZP_05872729.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4 str. 292] gi|260763621|ref|ZP_05875953.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59] gi|260882073|ref|ZP_05893687.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9 str. C68] gi|261216447|ref|ZP_05930728.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3 str. Tulya] gi|261220817|ref|ZP_05935098.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94] gi|261312940|ref|ZP_05952137.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis M163/99/10] gi|261318335|ref|ZP_05957532.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis B2/94] gi|261757195|ref|ZP_06000904.1| exonuclease [Brucella sp. F5/99] gi|265986133|ref|ZP_06098690.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis M292/94/1] gi|265990297|ref|ZP_06102854.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1] gi|265992595|ref|ZP_06105152.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv. 3 str. Ether] gi|265995827|ref|ZP_06108384.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M490/95/1] gi|297249226|ref|ZP_06932927.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str. B3196] gi|62198030|gb|AAX76329.1| hypothetical exonuclease [Brucella abortus bv. 1 str. 9-941] gi|82940090|emb|CAJ13133.1| Exonuclease [Brucella melitensis biovar Abortus 2308] gi|148369397|gb|ABQ62269.1| putative exonuclease [Brucella ovis ATCC 25840] gi|189021664|gb|ACD74385.1| Exonuclease [Brucella abortus S19] gi|260098342|gb|EEW82216.1| exonuclease [Brucella abortus NCTC 8038] gi|260152695|gb|EEW87788.1| exonuclease [Brucella melitensis bv. 1 str. 16M] gi|260670699|gb|EEX57639.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4 str. 292] gi|260674042|gb|EEX60863.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59] gi|260676359|gb|EEX63180.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6 str. 870] gi|260871601|gb|EEX78670.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9 str. C68] gi|260918054|gb|EEX84915.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3 str. Tulya] gi|260919401|gb|EEX86054.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94] gi|261297558|gb|EEY01055.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis B2/94] gi|261301966|gb|EEY05463.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis M163/99/10] gi|261737179|gb|EEY25175.1| exonuclease [Brucella sp. F5/99] gi|262550124|gb|EEZ06285.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M490/95/1] gi|262763465|gb|EEZ09497.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv. 3 str. Ether] gi|263000966|gb|EEZ13656.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1] gi|264658330|gb|EEZ28591.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis M292/94/1] gi|297173095|gb|EFH32459.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str. B3196] Length = 332 Score = 67.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 23/234 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ + IIEIGAV D F L + E ++ GI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE +K + D + IAHNA FD F+ +R++ + Sbjct: 134 TDEMVKGRTIPRDEL----DALIAEADIIIAHNAGFDRPFL----ERLSIAFANKPWACS 185 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178 I L L + G + + + +++ Sbjct: 186 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 245 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 + F ++ R K +T + ++EL+ + + Sbjct: 246 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 299 >gi|227495535|ref|ZP_03925851.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] gi|226831082|gb|EEH63465.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] Length = 206 Score = 67.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 3/166 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIETTGL +D I E+ AV+ TF + P GR+ +L GI ++ Sbjct: 18 VSVDIETTGLG-DSDAITELAAVKYQKGQVV-ETFSSLVNP-GRQIPVFITRLTGIDNQL 74 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F +F + + +AHNA+FD F+ ++ + P+ I Sbjct: 75 VADAPTLREVLPVFLEFCDFPRSVLLAHNARFDTRFLMNACAQLGLEWQFPASIDTVFFS 134 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + I + + H AL D++ ++Y ++ Sbjct: 135 RALLPRPQVQNHRLGTLAHHFGIKNPNAHRALADAYTCLELYKCLL 180 >gi|325279748|ref|YP_004252290.1| Exonuclease RNase T and DNA polymerase III [Odoribacter splanchnicus DSM 20712] gi|324311557|gb|ADY32110.1| Exonuclease RNase T and DNA polymerase III [Odoribacter splanchnicus DSM 20712] Length = 260 Score = 67.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 9/192 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG++ DRI+EI +++ + + +T + + P G EA +HGI DE Sbjct: 10 VFFDLETTGINIAKDRIVEISVLKVYPNGKEEQKTIR--VNP-GMHIPEEASAIHGIYDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P F I E + + N L+ + + +D + Sbjct: 67 DVKDAPMFKHIARELAHYIEGCDLGGYNSNRFDIPLLAEEFLRAEVDFDMSKRKFVDVQT 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + S + H A D+ +V + + + + Sbjct: 127 IFHK----MEQRTLSAAYHFYCDKCLEDAHTAAADTMATYEVLMAQLDRYGE-KLENNID 181 Query: 189 EDRFFKEEKKTV 200 F + K V Sbjct: 182 FLSKFSTQNKNV 193 >gi|258611758|ref|ZP_05711628.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503] gi|258605945|gb|EEW18553.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503] Length = 1144 Score = 67.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 128 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 185 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F + + +AHNA FD+GFIN +++ + + + + Sbjct: 186 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 243 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187 + LN+L K++ I H A+ D+ + + K++ ++ N F Sbjct: 244 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHD 301 Query: 188 NEDRFFKEEKKTVPNISL 205 + + + E Sbjct: 302 SLNDYMGEGDAYKRARPF 319 >gi|254247914|ref|ZP_04941235.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|124872690|gb|EAY64406.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] Length = 212 Score = 67.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 8/173 (4%) Query: 4 KNKMRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + M+ + V D ETTGL DR EI + L D +R FQ + GR+ + + Sbjct: 5 SSTMQTVAVLDFETTGLSPNLGDRATEIAVILLRDGQVVDR-FQSLMN-AGRRIPSDVVA 62 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT++ + P S + E F + +AHNA FD F + Sbjct: 63 LTGITNDMIATAPPASEVMKEAAAFVGK--HAVVAHNAGFDKRFWQ--SELGMLGMSADH 118 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ +ARR +P +R+ S H A++D+ + ++ ++ Sbjct: 119 AFACTMLVARRIYPDARSHRLSSLAEMLRLPQTGRAHRAMVDAEMAGHLWCRL 171 >gi|15604982|ref|NP_219766.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D/UW-3/CX] gi|76788983|ref|YP_328069.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13] gi|166154472|ref|YP_001654590.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu] gi|166155347|ref|YP_001653602.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802684|ref|YP_002887878.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis B/Jali20/OT] gi|237804606|ref|YP_002888760.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis B/TZ1A828/OT] gi|255311062|ref|ZP_05353632.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276] gi|255317363|ref|ZP_05358609.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s] gi|255348621|ref|ZP_05380628.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70] gi|255503161|ref|ZP_05381551.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s] gi|255506839|ref|ZP_05382478.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923] gi|301335732|ref|ZP_07223976.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1] gi|3328673|gb|AAC67854.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX] gi|76167513|gb|AAX50521.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13] gi|165930460|emb|CAP03953.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu] gi|165931335|emb|CAP06907.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231272906|emb|CAX09817.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis B/TZ1A828/OT] gi|231273918|emb|CAX10710.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis B/Jali20/OT] gi|289525300|emb|CBJ14776.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2] gi|296434850|gb|ADH17028.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150] gi|296435777|gb|ADH17951.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768] gi|296436702|gb|ADH18872.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222] gi|296437637|gb|ADH19798.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074] gi|296438570|gb|ADH20723.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023] gi|297140136|gb|ADH96894.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301] gi|297748391|gb|ADI50937.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-EC] gi|297749271|gb|ADI51949.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-LC] Length = 232 Score = 67.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 66/168 (39%), Gaps = 7/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG DRI+E+ A T+ +FQ + P EA K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRIVELAAY----NGTTSESFQTLVNPE-IPIPAEATKIHGITTAE 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P F + +F +F N +N FD + E +R I Sbjct: 60 VADAPRFPEAYQKFIEFCGTDNILVAHNNNAFDYPLLVRECRRHGLSEPQLRTIDSLKWA 119 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + ++ L L + YG H AL D L V+ ++ Sbjct: 120 KKYRTDLPQHSLQYLRQVYGFE--ENQAHRALDDVITLYRVFSALVGD 165 >gi|212715911|ref|ZP_03324039.1| hypothetical protein BIFCAT_00820 [Bifidobacterium catenulatum DSM 16992] gi|212661278|gb|EEB21853.1| hypothetical protein BIFCAT_00820 [Bifidobacterium catenulatum DSM 16992] Length = 196 Score = 67.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 5/177 (2%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IV D ETTGL K R+IEIGAV++ + + F + P L GI D Sbjct: 22 FIVIDTETTGLSVRKGARLIEIGAVKIHNDELVDE-FDQLINP-FEHIPSRITGLTGIDD 79 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDT 126 L KP + EF + A +AHNA FD+ F++ +Q + Sbjct: 80 GMLLGKPDVREVMDEFARW-CSDTAVVMAHNASFDMSFLDNAVQLAYADRDARFAHHFVD 138 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 R+ + I+ +H AL D+ +Y M + Sbjct: 139 TLDLSRRLHPEKRTHKVSTLIVDYHIADMEEHRALSDAKQEWMLYRAMRDEAELLGM 195 >gi|134292561|ref|YP_001116297.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] gi|134135718|gb|ABO56832.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] Length = 205 Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 8/177 (4%) Query: 7 MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+ + V D ETTGL DR EI + L D +R +Q + GR+ + + L G Sbjct: 1 MQTVAVLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLMN-AGRRIPSDVVALTG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+E + P S + E F +AHNA FD F + + Sbjct: 59 ITNEMIATAPPVSKVMKEAAAFVGS--HPVVAHNAGFDKRFWQ--AELGSLGVAADHPFA 114 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 T+ +ARR +P +R+ S H A++D+ + S ++ +M + Sbjct: 115 CTMLVARRLYPHARSHRLSSLADLLRLPQAGRAHRAMVDAEIASHLWCRMQRDIGET 171 >gi|300087648|ref|YP_003758170.1| DNA polymerase III subunit epsilon [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527381|gb|ADJ25849.1| DNA polymerase III, epsilon subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 260 Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 65/171 (38%), Gaps = 6/171 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL+ DRI+EI V+LL T + + P G A +HGITD+ Sbjct: 11 VFFDLETTGLNPLKDRIVEITLVKLLPDG-TEESRSRLIDP-GIPIPETATAIHGITDDR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + +PSF+ I F DF + + RIIDT I Sbjct: 69 VAGQPSFNRIAKSFRDFLEGCDLCGFNIKKFDIPMLEAEFRRAGVDFSRAGRRIIDTQVI 128 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + HP SL + H + D+ +++ + Sbjct: 129 FHKFHPRGLEAAYSLY----CGKQLANLHSSDADARACAEILSAQLAAHES 175 >gi|237817379|ref|ZP_04596371.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A] gi|237788192|gb|EEP62408.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A] Length = 379 Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 23/234 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ + IIEIGAV D F L + E ++ GI Sbjct: 121 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 180 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE +K + D + IAHNA FD F+ +R++ + Sbjct: 181 TDEMVKGRTIPRDEL----DALIAEADIIIAHNAGFDRPFL----ERLSIAFANKPWACS 232 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178 I L L + G + + + +++ Sbjct: 233 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 292 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 + F ++ R K +T + ++EL+ + + Sbjct: 293 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 346 >gi|76789273|ref|YP_328359.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13] gi|255311354|ref|ZP_05353924.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276] gi|255317655|ref|ZP_05358901.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s] gi|255348913|ref|ZP_05380920.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70] gi|255503453|ref|ZP_05381843.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s] gi|255507132|ref|ZP_05382771.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923] gi|76167803|gb|AAX50811.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13] gi|289525581|emb|CBJ15059.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2] gi|296435141|gb|ADH17319.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150] gi|296436069|gb|ADH18243.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768] gi|296436997|gb|ADH19167.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222] gi|296437930|gb|ADH20091.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074] gi|296438861|gb|ADH21014.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023] gi|297140430|gb|ADH97188.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301] Length = 250 Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 4/182 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ + + D ETTGLD K DR+IE A+ + + + P R S E+ Sbjct: 1 MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSV-EFLIHPE-RAVSAESQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K+H I+D L+DKP F +FS FF E++ H + Sbjct: 59 KIHKISDAMLRDKPKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLGETLLPKH 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL +A+ S N L +L + + + H A+ D + V+ + Sbjct: 119 HYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGN--HRAMKDVEMNVKVFKHLTKRFRT 176 Query: 181 IN 182 ++ Sbjct: 177 LS 178 >gi|237802965|ref|YP_002888159.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis B/Jali20/OT] gi|231274199|emb|CAX10993.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis B/Jali20/OT] Length = 250 Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 4/182 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ + + D ETTGLD K DR+IE A+ + + + P R S E+ Sbjct: 1 MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSV-EFLIHPE-RAVSAESQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K+H I+D L+DKP F +FS FF E++ H + Sbjct: 59 KIHKISDAMLRDKPKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLGETLLPKH 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL +A+ S N L +L + + + H A+ D + V+ + Sbjct: 119 HYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGN--HRAMKDVEMNVKVFKHLTKRFRT 176 Query: 181 IN 182 ++ Sbjct: 177 LS 178 >gi|311740325|ref|ZP_07714155.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC 33035] gi|311304608|gb|EFQ80681.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC 33035] Length = 229 Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 7/170 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG + + DRIIE+ + + + + P+G++ + +HGIT+ Sbjct: 31 FAVIDTETTGFNKRYDRIIELAVARFDESFRLVDQWHTLINPDGKQI--KNSHIHGITNA 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127 + P+F +++EF + +AHNA FD I AE +RI D D +DT+ Sbjct: 89 DVAHAPTFPEVYTEFAARVDG--MVLMAHNAPFDSKMILAEAERITPDGEDVYFPFVDTI 146 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 ++A++ L++L G+ + H A+ D+ + K+ Sbjct: 147 ALAKQMVSLRSYKLSALLDHVGL--HNPQSHAAIADATATGQMLNKLFGK 194 >gi|169832144|ref|YP_001718126.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis audaxviator MP104C] gi|169638988|gb|ACA60494.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis audaxviator MP104C] Length = 247 Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59 + +K+R +V D ETTG + D +I +GAV + + + F + P GR P Sbjct: 48 MPLSKLRFVVLDTETTGFEPAGGDEVIALGAVVVKNGRPRPEQVFHRLVNP-GRSIPPLV 106 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91 L GI+DE + + ++ F +F Sbjct: 107 TALTGISDEAVAGEDDLVAVLPCFLEFLGNDC 138 >gi|330469366|ref|YP_004407109.1| hypothetical protein VAB18032_27181 [Verrucosispora maris AB-18-032] gi|328812337|gb|AEB46509.1| hypothetical protein VAB18032_27181 [Verrucosispora maris AB-18-032] Length = 584 Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 71/216 (32%), Gaps = 9/216 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG I EIGAV++ + + P G P L GIT+ Sbjct: 32 FVVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITEA 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L PS + F +F ++ A +AHNA +DVGF+ A R +P + Sbjct: 90 MLLPAPSIEQVLPSFLEFVSD--AVLVAHNAPYDVGFLKAACARHGYRWPNPRVLDTAAL 147 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R + + H AL D+ DV ++ Sbjct: 148 ARRVLLRDEVPNRKLGTLAAYFRAATTPTHRALDDARATVDVLHGLIGRLGGHRVDTIGE 207 Query: 189 EDRFFKEEKKTVPNISLL-----KRDKPLFTRITKE 219 F + T L + R + Sbjct: 208 AIEFARAVTPTQRRKRHLADGLPRSPGVYIFRAADD 243 >gi|17988635|ref|NP_541268.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. 16M] gi|17984439|gb|AAL53532.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str. 16M] Length = 272 Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 23/234 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ + IIEIGAV D F L + E ++ GI Sbjct: 14 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 73 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE +K + D + IAHNA FD F+ +R++ + Sbjct: 74 TDEMVKGRTIPRDEL----DALIAEADIIIAHNAGFDRPFL----ERLSIAFANKPWACS 125 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178 I L L + G + + + +++ Sbjct: 126 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 + F ++ R K +T + ++EL+ + + Sbjct: 186 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 239 >gi|329942731|ref|ZP_08291510.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Chlamydophila psittaci Cal10] gi|332287328|ref|YP_004422229.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC] gi|313847912|emb|CBY16907.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci RD1] gi|325506611|gb|ADZ18249.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC] gi|328814991|gb|EGF84980.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Chlamydophila psittaci Cal10] gi|328914571|gb|AEB55404.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC] Length = 228 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 7/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG DRIIEI A ++ T +F ++ P EA K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRIIEIAA---YNHK-TKESFVTYVNPE-IPIPEEASKIHGITTST 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P F + F DF + +N FD + E +R PL I Sbjct: 60 VISAPKFPEAYKHFCDFCGNEAVLVAHNNDSFDFPLLEKECRRHALPPLSLKTIDSLKWA 119 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + +++L L + YG H AL D L +V+ ++ Sbjct: 120 QKYRPDLPKHNLQYLRQVYGFA--ENQAHRALDDVITLHNVFSALIGD 165 >gi|260662302|ref|ZP_05863198.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus fermentum 28-3-CHN] gi|260553685|gb|EEX26577.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus fermentum 28-3-CHN] Length = 1447 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL + DRII++ AV++ D + F F+ P G S + L ITD+ Sbjct: 427 YVIFDIETTGLSAIYDRIIQVSAVKMQDG-EVLDHFDQFIDP-GFHLSEQTTALTSITDD 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + + F D + HN FD+GF+N +R + I Sbjct: 485 MVQGSKTEEEVLKLFDD--FADGSLLAGHNVSFDMGFMNVAYERHGMGQIKQPVIDTLPL 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 LN+L KR+ +++ H H A DS + + + Sbjct: 543 ARFLHPDFRGYRLNTLSKRFKVSLEH--HHLASYDSEATGHLLAIFLKDAEE 592 >gi|227514713|ref|ZP_03944762.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] gi|227086917|gb|EEI22229.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] Length = 1447 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL + DRII++ AV++ D + F F+ P G S + L ITD+ Sbjct: 427 YVIFDIETTGLSAIYDRIIQVSAVKMQDG-EVLDHFDQFIDP-GFHLSEQTTALTSITDD 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + + F D + HN FD+GF+N +R + I Sbjct: 485 MVQGSKTEEEVLKLFDD--FADGSLLAGHNVSFDMGFMNVAYERHGMGQIKQPVIDTLPL 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 LN+L KR+ +++ H H A DS + + + Sbjct: 543 ARFLHPDFRGYRLNTLSKRFKVSLEH--HHLASYDSEATGHLLAIFLKDAEE 592 >gi|184155198|ref|YP_001843538.1| DNA polymerase III PolC [Lactobacillus fermentum IFO 3956] gi|183226542|dbj|BAG27058.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus fermentum IFO 3956] Length = 1447 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL + DRII++ AV++ D + F F+ P G S + L ITD+ Sbjct: 427 YVIFDIETTGLSAIYDRIIQVSAVKMQDG-EVLDHFDQFIDP-GFHLSEQTTALTSITDD 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + + F D + HN FD+GF+N +R + I Sbjct: 485 MVQGSKTEEEVLKLFDD--FADGSLLAGHNVSFDMGFMNVAYERHGMGQIKQPVIDTLPL 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 LN+L KR+ +++ H H A DS + + + Sbjct: 543 ARFLHPDFRGYRLNTLSKRFKVSLEH--HHLASYDSEATGHLLAIFLKDAEE 592 >gi|15896683|ref|NP_350032.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC 824] gi|15026532|gb|AAK81372.1|AE007841_7 DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC 824] gi|325510847|gb|ADZ22483.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum EA 2018] Length = 1452 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 81/206 (39%), Gaps = 7/206 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG K ++I EIG ++ + ++ F +F+ P + +++ ITD+ Sbjct: 428 YCVLDLETTGFSPKTEKITEIGIMKYENGKVIDK-FSLFVNPE-KPIPARVVEVTNITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + +F + +F + +AHNA FD+GF+ + + + +L+ Sbjct: 486 MVKNAETIDKVFPKMLEFIKG--SVLVAHNASFDIGFLKHNAKVLGYEFDFTYLDTLSLA 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 A S + I H AL D V+ M+ + + Sbjct: 544 QAVFPQYKSYKL---GRIAKNLGIKVEVAHRALDDVDTTVKVFKVMLEILKERGAKTLED 600 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 D + +E+ L+ + Sbjct: 601 VDIYSVDEESKKEEYKKLRTYHAIIL 626 >gi|328881521|emb|CCA54760.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC 10712] Length = 330 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 75/199 (37%), Gaps = 8/199 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ L + + P P + +HG+T + Sbjct: 21 YAVVDVETTGL-ARDDRIVSAAVYRLDAQGNVEDHWYTLVNPER---DPGPVWIHGLTTD 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F I +EF + +AHNA FD I E R R+ Sbjct: 77 VLAGAPLFPEIAAEFAARLDG--RVLVAHNAMFDWQMIAREYARAESAAPVRQRLCTIAL 134 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 P + L SL +G+ H AL D+ +L++ + + ++ N Sbjct: 135 AKELSLPLPNHKLESLAAHFGVVQQRA--HNALDDARVLAEAFRPSLHAAAERNVRLPLL 192 Query: 189 EDRFFKEEKKTVPNISLLK 207 E R E + + + Sbjct: 193 ECRPLTEWASSSERPRIGQ 211 >gi|307565674|ref|ZP_07628146.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A] gi|307345619|gb|EFN90984.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A] Length = 892 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 3/117 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD ETTGLD ND IIEI A+++ + + +T +++ + +K + + + + Sbjct: 511 VVFDTETTGLDVFNDDIIEISAIKIRNGKQIGKTLDLYIYTDKTILPKLGIKDNPLYEIY 570 Query: 70 L---KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + + N+ +AHN +D ++ L+R D L+ Sbjct: 571 NEKLNSGELINIKEALNEFLKFADNSILMAHNINYDYHILDNCLRRYTGDNLNNYNF 627 >gi|308234672|ref|ZP_07665409.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis ATCC 14018] gi|311114561|ref|YP_003985782.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Gardnerella vaginalis ATCC 14019] gi|310946055|gb|ADP38759.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Gardnerella vaginalis ATCC 14019] Length = 359 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 I K +V D ETTGL+SK D+IIEIGAV+ +D FQ + Sbjct: 171 IGKTSKNFVVIDCETTGLNSKVDKIIEIGAVKFIDGKI--EEFQKLIN 216 >gi|225629458|ref|ZP_03787491.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo] gi|225615954|gb|EEH13003.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo] Length = 379 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 62/227 (27%), Gaps = 9/227 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ + IIEIGAV D F L + E ++ GI Sbjct: 121 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 180 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE +K + + A + F A + + Sbjct: 181 TDEMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLERLSIAFANKPWACSVKEIDWTA 240 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + S + + +++ + Sbjct: 241 RGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTP-FAELLKASQRARMRI 299 Query: 186 KTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 F ++ R K +T + ++EL+ + + Sbjct: 300 YAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 346 >gi|13959345|sp|Q9CDT7|DPO3_LACLA RecName: Full=DNA polymerase III polC-type; Short=PolIII Length = 1638 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 7/190 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + + F F+ P R + D Sbjct: 596 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINPGYRLSEFTTELTGITDDH 654 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 KP + + + +AHNA FDVGF+N R + ++ Sbjct: 655 VKNAKPLYEVLTKFQK---FCEGTILVAHNATFDVGFMNMNYSRNGLPIITQPVVDTLEF 711 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + + + G+ H + A LL V+++ + + Sbjct: 712 ARNLYPEMKRFGLGQLTKKFQIGLEHHHMANFDAEATGRLLF-VFLEELRTRNTGWTSLL 770 Query: 187 TNEDRFFKEE 196 D+ E+ Sbjct: 771 ELNDKLVSED 780 >gi|15643262|ref|NP_228306.1| DNA polymerase III, epsilon subunit, putative [Thermotoga maritima MSB8] gi|4981007|gb|AAD35581.1|AE001726_15 DNA polymerase III, epsilon subunit, putative [Thermotoga maritima MSB8] Length = 189 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 3/95 (3%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG D DRI+EI AV + N+ F + P R K+HGI++ Sbjct: 13 VVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNPRIR-IPALIQKVHGISNM 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103 + + P +++ F D+ + N Sbjct: 72 DIVEAPDMDTVYDLFRDYVKGTVLVFHNANFDLTF 106 >gi|331701344|ref|YP_004398303.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929] gi|329128687|gb|AEB73240.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929] Length = 1439 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 6/171 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL + DR+IE+ AV++ + + ++ F+ F+ P G S L ITDE Sbjct: 420 YVVFDTETTGLSAIYDRVIELSAVKMQNSNVIDQ-FEEFIDP-GFHLSERTTNLTSITDE 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S +F F +F + A + HN FD+GF+N R + I Sbjct: 478 MVHGSKSEEEVFKLFREFCGD--AIVVGHNVTFDMGFMNTGYVRHGMHEMQNPIIDTLTL 535 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 LN+L K++ +++ H H A+ D+ + + Sbjct: 536 ARFLYPNLRGYRLNTLAKKFDVSLEH--HHRAIYDAETTGHLNYLFLKDAE 584 >gi|291537849|emb|CBL10960.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis XB6B4] Length = 226 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 7/167 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +++D+ETTG+ S D +IEI AV++ + + F + P GR A ++ I+D+ Sbjct: 17 YVLYDLETTGISSLYDEVIEISAVKVRNGKIVDE-FSELVNP-GRPIPYAASSVNNISDK 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127 +++ SF + EF + HN FD+ F+ + ++ L I Sbjct: 75 MVENARSFEKVLPEFLA--FAGDDVLAGHNIAGFDMKFLYRDCEKYFGQTLTNDYIDTLA 132 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L+ L + YGI+ H AL D + V+ M Sbjct: 133 IAKLCFPEWKHRRLSDLAEHYGISTKGA--HRALADCRMNQQVFELM 177 >gi|291537711|emb|CBL10823.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis M50/1] Length = 226 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 7/167 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +++D+ETTG+ S D +IEI AV++ + + F + P GR A ++ I+D+ Sbjct: 17 YVLYDLETTGISSLYDEVIEISAVKVRNGKIVDE-FSELVNP-GRPIPYAASSVNNISDK 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127 +++ SF + EF + HN FD+ F+ + ++ L I Sbjct: 75 MVENARSFEKVLPEFLA--FAGDDVLAGHNIAGFDMKFLYRDCEKYFGQTLTNDYIDTLA 132 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L+ L + YGI+ H AL D + V+ M Sbjct: 133 IAKLCFPEWKHRRLSDLAEHYGISTKGA--HRALADCRMNQQVFELM 177 >gi|315038988|ref|YP_004032556.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112] gi|325957414|ref|YP_004292826.1| DNA polymerase III [Lactobacillus acidophilus 30SC] gi|312277121|gb|ADQ59761.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112] gi|325333979|gb|ADZ07887.1| DNA polymerase III [Lactobacillus acidophilus 30SC] gi|327184122|gb|AEA32569.1| DNA polymerase III [Lactobacillus amylovorus GRL 1118] Length = 318 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 63/199 (31%), Gaps = 3/199 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 DIETTGL DRI E+GAV++ + ++ + + P + E Sbjct: 36 LDIETTGLSPYRDRITELGAVKVRNGQIVDQ-YTNLIKFPKNNKVPAFITKLNGITEEQI 94 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + + + I +N FD+ F+ Q+ L+ + Sbjct: 95 VNEGIPAEQAIKEFREFIDDDIIIGYNVNFDLNFLYDLSQKYKLPILNNDYVDVLRLARA 154 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191 N L +R GI +H L DS VY + N+ + Sbjct: 155 YYPRERHNRLIDCMQRAGIA--QVEEHHGLADSLDTIKVYNDFSAHFTDDLLEATRNKIK 212 Query: 192 FFKEEKKTVPNISLLKRDK 210 V I L R+ Sbjct: 213 NVDLTGDDVDYIDLGFRNP 231 >gi|299140892|ref|ZP_07034030.1| exonuclease [Prevotella oris C735] gi|298577858|gb|EFI49726.1| exonuclease [Prevotella oris C735] Length = 286 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 6/198 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGLD NDRII++ +++ R + P G+ L GI DE Sbjct: 10 VVFDLETTGLDIVNDRIIQLSFIKVCPDGTEERGDH-LINP-GKHIPDMVSDLTGIDDEK 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD PSF + + + F + N L+ R+ID +I Sbjct: 68 VKDAPSFKQLSATLAEKFKGCDFAGFNSNRFDVPMLAEEFLRAGIDFDFSKCRLIDAQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + + A Y ++ + ++ Sbjct: 128 FHK----MEKRNLAAAYEFYCGRKMDEDFEAHRADQDTEATYRVLLGQLDMYSADKQSET 183 Query: 190 DRFFKEEKKTVPNISLLK 207 +R + + + S Sbjct: 184 ERILPNDMDYLADFSKQN 201 >gi|237804887|ref|YP_002889041.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis B/TZ1A828/OT] gi|231273187|emb|CAX10100.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis B/TZ1A828/OT] Length = 250 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 4/182 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ + + D ETTGLD K DR+IE A+ + + + P R S E+ Sbjct: 1 MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSV-EFLIHPE-RAVSAESQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K+H I+D L+DKP F +FS FF E++ H + Sbjct: 59 KIHKISDAMLRDKPKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLGETLLPKH 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL +A+ S N L +L + + + H A+ D + V+ + Sbjct: 119 HYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGN--HRAMKDVEMNVKVFKHLTKRFRT 176 Query: 181 IN 182 ++ Sbjct: 177 LS 178 >gi|182439459|ref|YP_001827178.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780122|ref|ZP_08239387.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus XylebKG-1] gi|178467975|dbj|BAG22495.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660455|gb|EGE45301.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus XylebKG-1] Length = 341 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 79/211 (37%), Gaps = 10/211 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + P P + +HG+T + Sbjct: 19 YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNPER---DPGPVWIHGLTSD 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + E + +AHNA FD I E R + R+ Sbjct: 75 VLEGAPLFPEVAEELSARLAD--RVLVAHNAAFDWSMIAREYARASVVAPVEQRLCTIAL 132 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + P + L SL +G+ H AL D+ +L++ + + ++ Sbjct: 133 AKELRLPLPNHKLASLAAHFGVVQQRA--HHALDDARVLAEAFRPSLHAAARGGVRLPLL 190 Query: 189 EDRFFKEEKKT--VPNISLLKRDKPLFTRIT 217 E R E + P + +P R + Sbjct: 191 ECRPLTEWSDSPVTPRVGYQPSRQPNSWRPS 221 >gi|319936397|ref|ZP_08010813.1| DNA polymerase III [Coprobacillus sp. 29_1] gi|319808512|gb|EFW05064.1| DNA polymerase III [Coprobacillus sp. 29_1] Length = 187 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 11/177 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +D+IIE+G +++ + ++ + + P R+ SP KL GIT++ Sbjct: 22 YCVIDLETTGLSWADDKIIEVGILKIRNQQIIDK-YSQLINPE-REVSPFITKLTGITND 79 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P+ I + + F + + HN FD+ F+ + ++ +DTL Sbjct: 80 MLLGMPTLDEIRDDVFSFIGD--DILLGHNTSFDLNFVANQFHIDIEN-----EYMDTLQ 132 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 R+ +P ++ + ++H ++ D ++Y K+ + Sbjct: 133 FCRKVYPHMKHHRLT--DMVQYLNLSNNEHRSIADCIATYELYEKIKIEIEDKKISL 187 >gi|315302974|ref|ZP_07873694.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria ivanovii FSL F6-596] gi|313628654|gb|EFR97067.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria ivanovii FSL F6-596] Length = 1452 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 436 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 493 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F + + +AHNA FD+GFIN +++ + + + Sbjct: 494 MVKGSDPIDVVLQRFKE--WSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLEL 551 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 552 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDYHD 609 Query: 189 EDRFFKEEKKTVPNISLL 206 + E Sbjct: 610 SLNDYMGEGDAYKRARPF 627 >gi|288928331|ref|ZP_06422178.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108] gi|288331165|gb|EFC69749.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108] Length = 284 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 70/182 (38%), Gaps = 4/182 (2%) Query: 2 IRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ N R +VFD+ETTGLD NDRII+I +++ K R + + P R E Sbjct: 1 MKLNLTRPLVVFDLETTGLDLVNDRIIQISYIKIYPDGKEERE-NLLVYPQ-RPIPDEVS 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GIT + ++D P+F + + F + N L+ Sbjct: 59 ELTGITTDLVEDAPTFEELAPRLNEVFKGCDFAGFNSNHFDIPMLAEEFLRAEIDFDFSS 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +R+ID +I + + H A D+ V + + S+ Sbjct: 119 ARLIDAQTIFHKMEKRNLAAAYKFY-CGRKMEDDFEAHRADQDAEATYRVLLGELERYSE 177 Query: 181 IN 182 N Sbjct: 178 AN 179 >gi|281492785|ref|YP_003354765.1| DNA polymerase III subunit alpha [Lactococcus lactis subsp. lactis KF147] gi|281376437|gb|ADA65923.1| DNA polymerase III, alpha subunit [Lactococcus lactis subsp. lactis KF147] Length = 1638 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 7/190 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + + F F+ P R + D Sbjct: 596 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINPGYRLSEFTTELTGITDDH 654 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 KP + + + +AHNA FDVGF+N R + ++ Sbjct: 655 VKNAKPLYEVLTKFQK---FCEGTILVAHNATFDVGFMNMNYSRNGLPIITQPVVDTLEF 711 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + + + G+ H + A LL V+++ + + Sbjct: 712 ARNLYPEMKRFGLGQLTKKFQIGLEHHHMANFDAEATGRLLF-VFLEELRTRNTGWTSLL 770 Query: 187 TNEDRFFKEE 196 D+ E+ Sbjct: 771 ELNDKLVSED 780 >gi|281355248|ref|ZP_06241742.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC BAA-548] gi|281318128|gb|EFB02148.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC BAA-548] Length = 185 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 4/97 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 +FD+ETTG+ DRI+E+ AV + +R FQ + P G + +A+ +H ITD+ + Sbjct: 11 IFDVETTGMSPVRDRIVELAAVRVDRDGSLSR-FQSLVNP-GVRIPAQAVAVHHITDDMV 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 PSF+ + +F + + +AHNA+FD+GF+ Sbjct: 69 AGAPSFARMGLDFLE--FASESTLVAHNARFDLGFLQ 103 >gi|315187162|gb|EFU20919.1| DNA polymerase III, epsilon subunit [Spirochaeta thermophila DSM 6578] Length = 198 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 6/165 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGLD ++EI V+ F + + P E K+HGI D+ Sbjct: 22 VAFDLETTGLDPVRHSVVEIACVKFQGGEP-RAFFSLLVKPP-HPIPAEVTKIHGIGDQD 79 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ P S+ F +AHNA FD+ F+ E R + R IDT + Sbjct: 80 VEEAPPLPSVLPMLESFVGT--HLLVAHNAPFDLSFLRIEYARCGRPYP-GFRAIDTRLL 136 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 AR P + R + I + H AL D+ D++ + Sbjct: 137 ARSVLPHLGRYSLASLTRA-LDIPLQQHHRALSDAWACGDLFYAL 180 >gi|240146656|ref|ZP_04745257.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82] gi|257201200|gb|EEU99484.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82] Length = 226 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 7/167 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +++D+ETTG+ S D +IEI AV++ + + F + P GR A ++ I+D+ Sbjct: 17 YVLYDLETTGISSLYDEVIEISAVKVRNGKIVDE-FSELVNP-GRPIPYAASSVNNISDK 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127 +++ SF + EF + HN FD+ F+ + ++ L I Sbjct: 75 MVENARSFEKVLPEFLA--FAGDDVLAGHNIAGFDMKFLYRDCEKYFGQTLTNDYIDTLA 132 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L+ L + YGI+ H AL D + V+ M Sbjct: 133 IAKLCFPEWKHRKLSDLAEHYGISTKGA--HRALADCRMNQQVFELM 177 >gi|313674131|ref|YP_004052127.1| DNA polymerase iii, epsilon subunit [Marivirga tractuosa DSM 4126] gi|312940829|gb|ADR20019.1| DNA polymerase III, epsilon subunit [Marivirga tractuosa DSM 4126] Length = 465 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 72/202 (35%), Gaps = 7/202 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + +RI EI + L D K + +Q + P R P+ +HGI D+ Sbjct: 2 YAIVDIETTGGYAARNRICEIAII-LHDGEKVVKEYQTLINPE-RHIPPQLSAIHGINDQ 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F + + N + + L ++ Sbjct: 60 MVEDAPKFYEEAKTIHELLEGNIFVAHSVNFDY---SFVKAAFQDLGYELKLKKLCTVRL 116 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L ++C+ GI I +H A D+ ++++ +++ + + Sbjct: 117 SRKIFPGLKSYSLGNICENRGIKI--NDRHRAFGDAIATAELFTQLVQHDTDNHIQKSLK 174 Query: 189 EDRFFKEEKKTVPNISLLKRDK 210 ++ + + + Sbjct: 175 KNAAVVNIPENLERTVFEDLPE 196 >gi|269115238|ref|YP_003303001.1| DNA polymerase III polC-type [Mycoplasma hominis] gi|268322863|emb|CAX37598.1| DNA polymerase III polC-type [Mycoplasma hominis ATCC 23114] Length = 1437 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 84/200 (42%), Gaps = 4/200 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE GA + + + T + Q FL R+ S ++ I +E Sbjct: 407 YVVFDLETTGLSPRLDDIIEFGATIVKNNTITQKI-QFFLQ-TKRELSAFTVESSHINNE 464 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+ + + ++ + +AHNA FD+ F + ++ D + Sbjct: 465 MLKNGYAQEEGIKKIYEILKD--KIAVAHNANFDINFCKEKFSKLGLDNSKIFGLDTLAL 522 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R+ L + KR+ I H D+++L+ ++IKM+ ++ + Sbjct: 523 SYFLNPDEFRHSLGYVAKRFNIIYDTTVAHRGDYDANVLAKIWIKMIDKLAKDYNILNSQ 582 Query: 189 EDRFFKEEKKTVPNISLLKR 208 + +K + R Sbjct: 583 DLNNVDSQKILSHKFTYETR 602 >gi|311746711|ref|ZP_07720496.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1] gi|126578388|gb|EAZ82552.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1] Length = 456 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 66/187 (35%), Gaps = 7/187 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + DIETTG + I EI A+ + D K F+ + P + L GI Sbjct: 1 MEFAIVDIETTGGAASTCGITEI-AILIHDGEKVIEEFESLINPE-QDIPTYITGLTGID 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P+F + + WD + + + N + + T Sbjct: 59 NSMVSDAPTFEELSDKLWDLLHGRVFVAHSVNFDYGFVRAC----FNAIGREFKVDKLCT 114 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + +AR+ P + I ++H A+ D+ + ++ +M+ SQ F Sbjct: 115 VRLARKIIPGLSSYSL-GRICETQKIPILARHRAMGDARATAILFDQMLKKDSQTVFQAL 173 Query: 187 TNEDRFF 193 Sbjct: 174 KKNSGEA 180 >gi|15674106|ref|NP_268281.1| DNA polymerase III PolC [Lactococcus lactis subsp. lactis Il1403] gi|12725180|gb|AAK06222.1|AE006440_8 DNA polymerase III, alpha chain [Lactococcus lactis subsp. lactis Il1403] Length = 1658 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 7/190 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + + F F+ P R + D Sbjct: 616 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINPGYRLSEFTTELTGITDDH 674 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 KP + + + +AHNA FDVGF+N R + ++ Sbjct: 675 VKNAKPLYEVLTKFQK---FCEGTILVAHNATFDVGFMNMNYSRNGLPIITQPVVDTLEF 731 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + + + G+ H + A LL V+++ + + Sbjct: 732 ARNLYPEMKRFGLGQLTKKFQIGLEHHHMANFDAEATGRLLF-VFLEELRTRNTGWTSLL 790 Query: 187 TNEDRFFKEE 196 D+ E+ Sbjct: 791 ELNDKLVSED 800 >gi|302546442|ref|ZP_07298784.1| putative DNA polymerase III epsilon subunit [Streptomyces hygroscopicus ATCC 53653] gi|302464060|gb|EFL27153.1| putative DNA polymerase III epsilon subunit [Streptomyces himastatinicus ATCC 53653] Length = 335 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 8/177 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ +L + + P P + +HG+T E Sbjct: 26 YAVVDVETTGL-ARDDRIVSAAVYQLDARGAVQDRWYTLVNPQR---DPGPVWIHGLTRE 81 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P F I + F + + +AHNA FD I E R + R+ Sbjct: 82 TLSDAPLFPDIATAFAERLDG--RVLVAHNAAFDWSMIAREFARSKTEAPVRQRLCTIAL 139 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 P + + L +L YG+ H AL D+ +L++ + + ++ Sbjct: 140 SKELGLPLANHKLETLAAHYGVV--QERAHHALDDARVLAETFRPSLHRAAEAGVRL 194 >gi|284030730|ref|YP_003380661.1| DNA polymerase III subunit epsilon [Kribbella flavida DSM 17836] gi|283810023|gb|ADB31862.1| DNA polymerase III, epsilon subunit [Kribbella flavida DSM 17836] Length = 602 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 68/201 (33%), Gaps = 4/201 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + I EIGAV++ FQ + P P L GITD + Sbjct: 41 VVDLETTGGAPGDSGITEIGAVKVRAGELVGE-FQSLVNP-AEPIPPFIAVLTGITDLMV 98 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P S+ F + + +AHNA FDVGF+ + Q D D + L Sbjct: 99 ASSPRIGSVLPAFLE--FARGCVLVAHNAPFDVGFLKHDSQVHGYDWPDFPVVDTALLAR 156 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R P + + H AL D+ DV + + + Sbjct: 157 RVLTPDEVPNCKLGTLAKLFRATTTPNHRALSDARATVDVLHGLFERVGSLGVQTLEDLQ 216 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 F V L P Sbjct: 217 TFSARVAPAVRKKRHLAESLP 237 >gi|15605265|ref|NP_220051.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D/UW-3/CX] gi|3328974|gb|AAC68138.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX] gi|297748666|gb|ADI51212.1| Exonuclease family protein [Chlamydia trachomatis D-EC] gi|297749546|gb|ADI52224.1| Exonuclease family protein [Chlamydia trachomatis D-LC] Length = 250 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 4/182 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ + + D ETTGLD K DR+IE A+ + + + P R S E+ Sbjct: 1 MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSV-EFLIHPE-RAVSAESQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K+H I+D L+DKP F +FS FF E++ H + Sbjct: 59 KIHKISDAMLRDKPKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLGETLLPKH 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL +A+ S N L +L + + + H A+ D + V+ + Sbjct: 119 HYVIDTLRLAKGYGDSPNNSLEALARHFNVPHQGN--HRAMKDVEMNVKVFKHLTKRFRT 176 Query: 181 IN 182 ++ Sbjct: 177 LS 178 >gi|306832698|ref|ZP_07465835.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338] gi|304425154|gb|EFM28283.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338] Length = 1464 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD Sbjct: 426 YVVFDVETTGLSAVNNDLIQIAASKMYKGNIV-EQFDEFINP-GHHLSAFTTELTGITDN 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ + F +F + +AHNA FDVGF+NA +R + I Sbjct: 484 HVRNAKPIEEVLQMFQNFCQD--TVLVAHNATFDVGFMNANYERHGMPIITQPVIDTLEF 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 542 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEARE 591 >gi|302345413|ref|YP_003813766.1| exonuclease [Prevotella melaninogenica ATCC 25845] gi|302149990|gb|ADK96252.1| exonuclease [Prevotella melaninogenica ATCC 25845] Length = 284 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 68/198 (34%), Gaps = 6/198 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGLD NDRII+I +++ K R +F+ P + E L GI+D Sbjct: 10 IVFDLETTGLDLVNDRIIQISFIKVHPDGKEERE-NIFINPE-KPIPAEVTLLTGISDAD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+F + D F + N L+ R+ID +I Sbjct: 68 VADAPTFKQKAKDLSDKFAGCDFAGYNSNRFDVPMLAEEFLRAGVDFDFSKCRLIDAQNI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + ++ A + + G + E Sbjct: 128 YHK----MERRNLAAAYKFYCGRKMEDDFEAHKADQDTEATWCVLQGELDMYAPGNQEEE 183 Query: 190 DRFFKEEKKTVPNISLLK 207 DR + + S + Sbjct: 184 DRVLNNDMDELAEFSRMN 201 >gi|257094042|ref|YP_003167683.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046566|gb|ACV35754.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 484 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 7/162 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ET+G + +DR+IE+G VE+ R + V + P SP +L GI D Sbjct: 13 VFVDLETSGANFASDRVIEVGLVEVDADGV--REWSVLVNPE-APISPFITRLTGIDDAM 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P+F + D + AHNA+FD GF+ E +R+ + + + T+ + Sbjct: 70 VGSAPTFRQLAPTLLDRLRGRLLV--AHNARFDYGFLQCEFKRLGVE--FRTPTLCTVKL 125 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +R+ P ++H AL D+ +L +++ Sbjct: 126 SRKLFPEHHRHNLDALVTRHGLKVAGNRHRALADARILWELW 167 >gi|325265145|ref|ZP_08131871.1| DNA polymerase III PolC-type (PolIII) [Clostridium sp. D5] gi|324029549|gb|EGB90838.1| DNA polymerase III PolC-type (PolIII) [Clostridium sp. D5] Length = 233 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 7/166 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTGL+ + + IIEIGA+++ D F F+ P + + ++ Sbjct: 5 YIAFDLETTGLNPEQNEIIEIGALKVRDGK-VQERFMEFVRPTENISP---VVMNLTGIT 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + SS + I HN FD F+ D ++ Sbjct: 61 NEMVADARSSRNVIPDFLDFCGDDILIGHNVIFDYSFVKIGAMAEGLDFERAGIDTLKIA 120 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 K S++ C I + + H A D+ + +Y + Sbjct: 121 RKVHKDMESKSL---GCLCDYYHIENNAAHRAYHDALATAKLYQTL 163 >gi|288803395|ref|ZP_06408828.1| exonuclease [Prevotella melaninogenica D18] gi|288334215|gb|EFC72657.1| exonuclease [Prevotella melaninogenica D18] Length = 284 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 68/198 (34%), Gaps = 6/198 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGLD NDRII+I +++ K R +F+ P + E L GI+D Sbjct: 10 IVFDLETTGLDLVNDRIIQISFIKVHPDGKEERE-NIFINPE-KPIPAEVTLLTGISDAD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+F + D F + N L+ R+ID +I Sbjct: 68 VADAPTFKQKAKDLSDKFAGCDFAGYNSNRFDVPMLAEEFLRAGVDFDFSKCRLIDAQNI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + ++ A + + G + E Sbjct: 128 YHK----MERRNLAAAYKFYCGRKMEDDFEAHKADQDTEATWRVLQGELDMYAPGNQEEE 183 Query: 190 DRFFKEEKKTVPNISLLK 207 DR + + S + Sbjct: 184 DRVLNNDMDELAEFSRMN 201 >gi|50084341|ref|YP_045851.1| ribonuclease T [Acinetobacter sp. ADP1] gi|49530317|emb|CAG68029.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse activity) [Acinetobacter sp. ADP1] Length = 221 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 66/197 (33%), Gaps = 16/197 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54 +V D+ET G +++ D ++EI + ++ ++ + P + Sbjct: 25 VVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYHAHINPFEGANLDRRSLDFIG 84 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P + ++ E +A + HNA FD+GF+ A + R + Sbjct: 85 IDPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDLGFLQAAIARTS 144 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P + + C + GI + H AL D+ ++++ Sbjct: 145 TKNQNPFHSFSVFDTVTLSAVMFGQTVLAKACIQAGIDFDGKEAHSALYDTQKTAELFCY 204 Query: 174 MMVGGSQINFGFKTNED 190 ++ S + Sbjct: 205 ILNKLSPHLLDTFLADQ 221 >gi|193212627|ref|YP_001998580.1| DNA polymerase III subunit epsilon [Chlorobaculum parvum NCIB 8327] gi|193086104|gb|ACF11380.1| DNA polymerase III, epsilon subunit [Chlorobaculum parvum NCIB 8327] Length = 232 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 63/183 (34%), Gaps = 8/183 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +++D ETTG D ++DRII IGAV +F+V L + Sbjct: 44 RFVIYDTETTGFDFRHDRIISIGAVGTKGEVIDIADSFEVLLRQEVCSERDAVTVHGLLK 103 Query: 67 DE-----FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + + + IA + L D + Sbjct: 104 RDIDSGLEESEAVCRFLDYLGNAVIVAHHADFDIAMINQVLSRRFGMRLFNEALDTASFA 163 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + ++ H L++LC RYGI +H A D++L + ++ +++ G + Sbjct: 164 KRLEKGPYYNLAHKGGEYRLDNLCARYGIR--LYDRHTAPGDAYLTAQLFQRLLALGRKA 221 Query: 182 NFG 184 Sbjct: 222 GID 224 >gi|281424378|ref|ZP_06255291.1| exonuclease [Prevotella oris F0302] gi|281401647|gb|EFB32478.1| exonuclease [Prevotella oris F0302] Length = 286 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 6/198 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGLD NDRII++ +++ R + P G+ L GI DE Sbjct: 10 VVFDLETTGLDIVNDRIIQLSFIKVCPDGTEERGDH-LINP-GKHIPDMVSALTGIDDEK 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD PSF + + + F + N L+ R+ID +I Sbjct: 68 VKDAPSFKQLSATLAEKFKGCDFAGFNSNRFDVPMLAEEFLRAGIDFDFSKCRLIDAQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + + A Y ++ + ++ Sbjct: 128 FHK----MEKRNLAAAYEFYCGRKMEEDFEAHRADQDTEATYRVLLGQLDMYSADKQSEA 183 Query: 190 DRFFKEEKKTVPNISLLK 207 +R + + + S Sbjct: 184 ERILPNDMDYLADFSKQN 201 >gi|320547752|ref|ZP_08042036.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812] gi|320447512|gb|EFW88271.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812] Length = 1464 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + F F+ P G S +L GITD Sbjct: 426 YVVFDVETTGLSAVHNDLIQIAASKMYKGNIV-EQFDEFINP-GHHLSAFTTELTGITDN 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ + F DF + +AHNA FDVGF+NA +R + I Sbjct: 484 HVRNAKPIEQVLQMFQDFCKD--TVLVAHNATFDVGFMNANYKRHGMPTITQPVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 542 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEARE 591 >gi|302561385|ref|ZP_07313727.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] gi|302479003|gb|EFL42096.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] Length = 314 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 46/190 (24%), Positives = 75/190 (39%), Gaps = 8/190 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + + P P + +HG+T + Sbjct: 10 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTTVNPER---DPGPVWIHGLTSD 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + +EF +AHNA FD I E R + R+ Sbjct: 66 VLEGAPLFKDVAAEFAARLEG--RVLVAHNAVFDWQMIAREYARARGEAPVRQRLCTIAL 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 K P + L SL +G+ H AL D+ +L++ + + + + Sbjct: 124 SKELKLPLPNHKLESLAAHFGVVQRRA--HHALDDARVLAEAFRPSLRAAAAGGVRLPLH 181 Query: 189 EDRFFKEEKK 198 E R E + Sbjct: 182 ECRPLTEWTE 191 >gi|58337906|ref|YP_194491.1| DNA polymerase III [Lactobacillus acidophilus NCFM] gi|227902927|ref|ZP_04020732.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796] gi|58255223|gb|AAV43460.1| DNA polymerase III [Lactobacillus acidophilus NCFM] gi|227869343|gb|EEJ76764.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796] Length = 318 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 63/205 (30%), Gaps = 3/205 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 DIETTGL DRI E+GAV++ + ++ + + P + E Sbjct: 36 LDIETTGLSPYRDRITELGAVKVRNGQIVDQ-YTNLVKFPKNNKVPAFITKLNGITEEQI 94 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + + + +N FD+ F+ Q+ L+ + Sbjct: 95 INEGIPAEQAITEFREFIGDDVIAGYNINFDLNFLYDLSQKFKLPILNNDYVDVLRLARA 154 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191 N L +R GI +H L DS VY + N+ + Sbjct: 155 YYPRERHNRLIDCMQRAGIA--KVEQHHGLADSLDTIKVYNDFSEHFTDELLENARNKIK 212 Query: 192 FFKEEKKTVPNISLLKRDKPLFTRI 216 V L R+ +I Sbjct: 213 NVDLTGDEVDYYQLGYRNPVQNKKI 237 >gi|171778812|ref|ZP_02919874.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282458|gb|EDT47882.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 1464 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD Sbjct: 426 FVVFDVETTGLSAVNNDLIQIAASKMYKGNIV-EQFDEFINP-GHHLSAFTTELTGITDN 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ + F DF + +AHNA FDVGF+NA +R + I Sbjct: 484 HVRNAKPIEEVLQMFQDFCQD--TVLVAHNATFDVGFMNANYERHGMPIITQPVIDTLEF 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 542 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEARE 591 >gi|310779125|ref|YP_003967458.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926] gi|309748448|gb|ADO83110.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926] Length = 1442 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 7/221 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V+D+ET GL+S + IIEIGA++L ++ + + P G+ + +L GITD+ Sbjct: 415 YVVYDLETMGLNSHENEIIEIGAIKLKGTRIVDK-YSQLINP-GKSIPSKIQELTGITDD 472 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD+PS + F + +A +AHNA+FD+GF+ ++++ +IDTL Sbjct: 473 MVKDEPSIEEVLPGFLE--FAGDATLVAHNARFDIGFLTRDVKKYTNIKDYKPSVIDTLQ 530 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 AR P R + ++ + H A+ DS + ++ + + Sbjct: 531 WARDLLPDLRGYGLKSV-TKKLGVALENHHRAVDDSQATAHMFAIFLEKFIEEGAVKLNE 589 Query: 189 EDRFF--KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 D+ F +K+ N+ LL ++ + K + H Sbjct: 590 LDKVFPVNIKKQDTSNVMLLVKNNTGLKNLYKLVSEAHINY 630 >gi|295133689|ref|YP_003584365.1| exonuclease family protein [Zunongwangia profunda SM-A87] gi|294981704|gb|ADF52169.1| exonuclease family protein [Zunongwangia profunda SM-A87] Length = 218 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 62/178 (34%), Gaps = 5/178 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALK--LHGI 65 +V D ETTG D + DRI+ IG V++ + +F+++L + + Sbjct: 37 FVVLDTETTGFDQEKDRILSIGCVKIKNNKLLVADSFEIYLKQEKFNPDTVEIHGLIKHE 96 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 E + ++ + D + N N + N+ Sbjct: 97 RFETISEEKAIQLFLKYIKDSVLVAHHAGFDINMINAALKRNHLPKLKNRVLDTGILYRK 156 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 T I+ L+ + Y I + +H A+ D+ + + ++K++ + Sbjct: 157 TRIISNFIDQHKTYSLDEVALAYNID--LKDRHTAIGDAFITAIAFLKILGRLKRKKL 212 >gi|119945580|ref|YP_943260.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37] gi|119864184|gb|ABM03661.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37] Length = 204 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 78/174 (44%), Gaps = 7/174 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 ++FD ETTGL K DR IEIGAV + + R FQ + P R +S Sbjct: 6 NIVIFDFETTGLSPKMGDRPIEIGAVRIKNGLLVER-FQALMHPGIRISSFIENFTGISN 64 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + KP + + F DF N +AHNA FD F++AEL RI++ Sbjct: 65 KMLAEAKPC-AEVMGRFCDFIGSDN--LVAHNASFDKRFLDAELHRISRGYSGQISCSML 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L+ + + + L +L I + H AL DS + ++V++ M+ Q Sbjct: 122 LARRVLRD-APNHKLGTLVDYLNI-QTEGVYHRALFDSEMTANVWLAMINKIQQ 173 >gi|121603395|ref|YP_980724.1| DNA polymerase III subunit epsilon [Polaromonas naphthalenivorans CJ2] gi|120592364|gb|ABM35803.1| Exonuclease, RNase T and DNA polymerase III [Polaromonas naphthalenivorans CJ2] Length = 220 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 2/131 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+++ D II IGAV + + T+ ++ + P R+ S E++++H + + Sbjct: 42 WVALDCETTGLNTRTDDIIAIGAVRIRDNRIMTSERLELLVRPEKRRLSAESVRVHRLRE 101 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRIIDT 126 + + S + F + + + + + Sbjct: 102 QDVAQGISADEAMMKLMYFIGSRPLVGYYLEFDLAMINRVLFPMLGMGLPQPKIEVSSMY 161 Query: 127 LSIARRKHPSS 137 + P Sbjct: 162 YDYKFHQLPHH 172 >gi|221195007|ref|ZP_03568063.1| putative exonuclease, RNase T and DNA polymerase III [Atopobium rimae ATCC 49626] gi|221184910|gb|EEE17301.1| putative exonuclease, RNase T and DNA polymerase III [Atopobium rimae ATCC 49626] Length = 251 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 5/166 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTGLD + D II++ + + K+ F+ +CP RK P A +++GIT + +K Sbjct: 26 IDTETTGLDPRKDEIIQLSMI--DGHGKS--IFESLICPPTRKRWPNAQEINGITPKMVK 81 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 KP + + + N + + +N FD+ + AE + R Sbjct: 82 GKPELEEVADQVQEAINAADLI-VGYNLPFDISMMEAEGFDFSDKEQYDLMEDYAQVFGR 140 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L + H A D+ ++ M+ Sbjct: 141 WSSAKDDYLWTKLTTAAKHYGIKFAAHDAGEDARATIKLFYAMLSD 186 >gi|194291379|ref|YP_002007286.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular protein) [Cupriavidus taiwanensis LMG 19424] gi|193225283|emb|CAQ71225.1| DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (modular protein) [Cupriavidus taiwanensis LMG 19424] Length = 532 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 6/105 (5%) Query: 8 RKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IVF D+ETTG D++ DRI EIG VE+ ++ L P G P ++ GI+ Sbjct: 31 RPIVFVDLETTGADAQRDRITEIGVVEVGPDGIV--EWETLLDP-GMSIPPFIQRMTGIS 87 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 D+ ++ +P+F S+ + ++AHNA+FD GF+ + Sbjct: 88 DDMVRGQPTFESLAESLAERLQG--RLFVAHNARFDYGFLKNAFR 130 >gi|89897057|ref|YP_520544.1| hypothetical protein DSY4311 [Desulfitobacterium hafniense Y51] gi|89336505|dbj|BAE86100.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1447 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 77/206 (37%), Gaps = 7/206 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG + ++I EIG +++ ++ F F+ P + +++ ITD+ Sbjct: 424 YCVLDLETTGFSAATEKITEIGIMKIQGGKIIDQ-FGCFVNPE-KPIPARVVEVTNITDD 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D + +F + +F + +AHNA FD+GF+ + + D +L+ Sbjct: 482 MVRDAETIDQVFPKILNFIEG--SVLVAHNADFDMGFLKHNAKVLGYDFDYTYLDTLSLA 539 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + I H AL D V+ M+ + + Sbjct: 540 KELFPDYKTYKL---GRIAKNLGIKVEVAHRALDDVGTTVKVFNIMVDMLKERGVETLED 596 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 D +E LK + Sbjct: 597 IDLKAADEAARKDEYKKLKTYHAIIL 622 >gi|219667072|ref|YP_002457507.1| DNA polymerase III subunit alpha [Desulfitobacterium hafniense DCB-2] gi|219537332|gb|ACL19071.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense DCB-2] Length = 1447 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 77/206 (37%), Gaps = 7/206 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG + ++I EIG +++ ++ F F+ P + +++ ITD+ Sbjct: 424 YCVLDLETTGFSAATEKITEIGIMKIQGGKIIDQ-FGCFVNPE-KPIPARVVEVTNITDD 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D + +F + +F + +AHNA FD+GF+ + + D +L+ Sbjct: 482 MVRDAETIDQVFPKILNFIEG--SVLVAHNADFDMGFLKHNAKVLGYDFDYTYLDTLSLA 539 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + I H AL D V+ M+ + + Sbjct: 540 KELFPDYKTYKL---GRIAKNLGIKVEVAHRALDDVGTTVKVFNIMVDMLKERGVETLED 596 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 D +E LK + Sbjct: 597 IDLKAADEAARKDEYKKLKTYHAIIL 622 >gi|326407708|gb|ADZ64779.1| DNA polymerase III subunit alpha, Gram-positive type [Lactococcus lactis subsp. lactis CV56] Length = 1638 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 7/190 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + + F F+ P R + D Sbjct: 596 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINPGYRLSEFTTELTGITDDH 654 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 KP + + + +AHNA FDVGF+N R + ++ Sbjct: 655 VKNAKPLYEVLTKFQK---FCEGTILVAHNATFDVGFMNMNYSRNGLPIITQPVVDTLEF 711 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + + + G+ H + A LL V+++ + + Sbjct: 712 ARNLYPEMKRFGLGQLTKKFQIGLEYHHMANFDAEATGRLLF-VFLEELRTRNTGWTSLL 770 Query: 187 TNEDRFFKEE 196 D+ E+ Sbjct: 771 ELNDKLVSED 780 >gi|282879820|ref|ZP_06288549.1| exonuclease [Prevotella timonensis CRIS 5C-B1] gi|281306330|gb|EFA98361.1| exonuclease [Prevotella timonensis CRIS 5C-B1] Length = 286 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 75/198 (37%), Gaps = 6/198 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+FD+ETTGLD NDRII+I +++L + R +F+ P + E ++L GIT+E Sbjct: 10 IIFDLETTGLDLVNDRIIQISYIKVLPNGEEERE-SIFVNPE-KPIPHEVIELTGITNED 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P F I + + F + + N L+ +ID +I Sbjct: 68 VANAPKFKEIAAHLQNQFKDSDIAGFNSNHFDVPLLAEEFLRAGIDFDFSKCNLIDVQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + ++ A + Y ++ + + + Sbjct: 128 FHK----MERRNLAAAYKFYCGRKMEEDFQAHKANEDAEATYRVLLGQLERYDPDKAEEK 183 Query: 190 DRFFKEEKKTVPNISLLK 207 +R + + + N S Sbjct: 184 ERALPNDMQYLANFSKTN 201 >gi|306846211|ref|ZP_07478773.1| DNA polymerase III subunit epsilon [Brucella sp. BO1] gi|306273462|gb|EFM55323.1| DNA polymerase III subunit epsilon [Brucella sp. BO1] Length = 332 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 72/234 (30%), Gaps = 23/234 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ + IIEIGAV D F L + E ++ GI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE +K + D IAHNA FD F+ +R + + Sbjct: 134 TDEMVKGRTIPRDEL----DALIAGADIIIAHNAGFDRPFL----ERFSIAFANKPWACS 185 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178 I L L + G + + + +++ Sbjct: 186 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 245 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 + F ++ R K +T + + EL+ + + Sbjct: 246 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGENELEAELEYL 299 >gi|39938951|ref|NP_950717.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M] gi|39722060|dbj|BAD04550.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M] Length = 1571 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 5/181 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D+IIEI V++ +K FQ F+ P +K + + ITDE Sbjct: 481 YVVFDLETTGLSNVRDKIIEIAGVKIKKGNKIGE-FQKFIDPQ-QKLTKTITDITNITDE 538 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ + + + +F ++ +AHNA FD+ F+ + + + L+P IIDT++ Sbjct: 539 MLQGQQTIDQVLPQFLA--FAKDCVLVAHNASFDINFLKEKAKELKIS-LEPQPIIDTMA 595 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +++R + + + H AL D+ ++++IKM+ + K Sbjct: 596 LSQRYFSNLLKYFSLKRLATFFKVKLEDHHRALADATATAEIFIKMIDQLADPTKDPKDE 655 Query: 189 E 189 + Sbjct: 656 Q 656 >gi|166154751|ref|YP_001654869.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu] gi|166155626|ref|YP_001653881.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336025|ref|ZP_07224269.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1] gi|165930739|emb|CAP04236.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu] gi|165931614|emb|CAP07190.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 250 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 4/182 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ + + D ETTGLD K DR+IE A+ + + + P R S E+ Sbjct: 1 MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSV-EFLIHPE-RAVSAESQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K+H I+D L+DKP F +FS FF E++ H + Sbjct: 59 KIHKISDAMLRDKPKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLGETLLPKH 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL +A+ S N L +L + + + H A+ D + V+ + Sbjct: 119 HYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGN--HRAMKDVEMNVKVFKHLTKRFRT 176 Query: 181 IN 182 ++ Sbjct: 177 LS 178 >gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis MA-4680] gi|29610102|dbj|BAC74150.1| putative DNA polymerase III epsilon subunit [Streptomyces avermitilis MA-4680] Length = 325 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 8/163 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + + P P + +HG+T + Sbjct: 22 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTMVNPER---DPGPVWIHGLTSD 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I +EF + +AHNA FD I E R R+ Sbjct: 78 VLEGAPLFEDIAAEFASRLAD--RVLVAHNAVFDWSMIAREYARAKSQAPVRQRLCTIAL 135 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P + L SL +G+ H AL D+ +L++ + Sbjct: 136 SKELGLPLPNHKLESLAAHFGVVQQRA--HHALDDARVLAEAF 176 >gi|194333861|ref|YP_002015721.1| DNA polymerase III subunit epsilon [Prosthecochloris aestuarii DSM 271] gi|194311679|gb|ACF46074.1| DNA polymerase III, epsilon subunit [Prosthecochloris aestuarii DSM 271] Length = 232 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 68/182 (37%), Gaps = 8/182 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +VFD ETTG D D +I IGAV +++ + +F+V + + R +A+ +HG+ Sbjct: 44 RYVVFDTETTGFDLSRDNVISIGAVAVMNGSIDISDSFEVLIRCD-RVGDGDAVSVHGLL 102 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L + F ++ + H + + + L+ + Sbjct: 103 RRDLVGGCNEREALDGFLNYIGDSILV-AQHAGFDIAMMNAIMRRHYHMELLNDVLDTAS 161 Query: 127 LSIARRKHPSSRNDLNSLCKR-----YGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ K P S R I +H + D+ L + ++ +++ + Sbjct: 162 LAKRLEKGPYYNLAHKSGEYRLDSLLERYHIRLYDRHTSAGDAFLTAQLFQRLLYSAASA 221 Query: 182 NF 183 Sbjct: 222 GI 223 >gi|225352024|ref|ZP_03743047.1| hypothetical protein BIFPSEUDO_03631 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157271|gb|EEG70610.1| hypothetical protein BIFPSEUDO_03631 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 196 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 67/177 (37%), Gaps = 5/177 (2%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IV D ETTGL K ++IEIGAV++ + + F + P L GI D Sbjct: 22 YIVIDTETTGLSVRKGAKLIEIGAVKIRNDELVDE-FDQLINP-FEHVPSRITGLTGIDD 79 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDT 126 L KP + EF + A +AHNA FD+ F++ +Q ++ + Sbjct: 80 GMLLGKPDVREVMDEFARW-CSDTAVVMAHNASFDMSFLDNAVQLAYSERDARFAHHFVD 138 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 R+ + I+ +H AL D+ +Y M + Sbjct: 139 TLDLSRRLHPEKRSHKVSTLIVDYHIADMEEHRALSDARQEWMLYRAMRDEAELLGM 195 >gi|159039058|ref|YP_001538311.1| hypothetical protein Sare_3518 [Salinispora arenicola CNS-205] gi|157917893|gb|ABV99320.1| DNA polymerase III, epsilon subunit [Salinispora arenicola CNS-205] Length = 585 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 64/167 (38%), Gaps = 3/167 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG I EIGAV++ + + P G P L GIT Sbjct: 32 FVVVDLETTGGAPDGGGITEIGAVKVRGGEQLG-VLATLVNP-GVPVPPFVTVLTGITQA 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L PS + + F +F + +A +AHNA +DVGF+ A +P + Sbjct: 90 MLLPAPSIAQVLPSFLEFLSA-DAVLVAHNAPYDVGFLKAACAAHGHRWPNPRILDTAAL 148 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + S + H AL D+ DV ++ Sbjct: 149 ARRVLSRDEVPNRRLGTLAAYFRTSTQPTHRALDDAKATVDVLHGLI 195 >gi|332311763|gb|EGJ24858.1| DNA polymerase III polC-type [Listeria monocytogenes str. Scott A] Length = 1457 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 441 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 498 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F + + +AHNA FD+GFIN +++ + + + + Sbjct: 499 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 556 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187 + LN+L K++ I H A+ D+ + + K++ ++ N F Sbjct: 557 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHD 614 Query: 188 NEDRFFKEEKKTVPNISL 205 + + + E Sbjct: 615 SLNDYMGEGDAYKRARPF 632 >gi|225076263|ref|ZP_03719462.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens NRL30031/H210] gi|224952387|gb|EEG33596.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens NRL30031/H210] Length = 463 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 7/171 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + DRI E+ V T ++ + P R +L GI DE Sbjct: 22 VVVDLETTGGNFYQDRITEVALVRFEQGRAT--HYEQLVNP-CRSIPEFVARLTGIHDET 78 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ P F+ I ++ A +AHN++FD F+ E RI+ D + + T+ + Sbjct: 79 VKNAPVFADIAADLLPLLQG--AVVVAHNSRFDYTFLRHEFARIHTD--FAAPSLCTVQL 134 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +RR +P + + L + + + Q Sbjct: 135 SRRLYPEFYKHSLDSIIERTGIQTANRHRAMTDVAALCDYLELSLAEKNHQ 185 >gi|34557013|ref|NP_906828.1| DNA polymerase III subunit epsilon [Wolinella succinogenes DSM 1740] gi|34482728|emb|CAE09728.1| DNA POLYMERASE III, EPSILON SUBUNIT, PUTATIVE [Wolinella succinogenes] Length = 203 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGR 53 + FD ETTGLD K D II + AV++ + T+ Q+F+ P G Sbjct: 32 VAFDCETTGLDPKKDEIISLAAVKIRDNKILTSEKLQLFVKPKGE 76 >gi|313608987|gb|EFR84729.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes FSL F2-208] Length = 1447 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 431 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 488 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F + + +AHNA FD+GFIN +++ + + + + Sbjct: 489 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 546 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 547 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDFHD 604 Query: 189 EDRFFKEEKKTVPNISLL 206 + E Sbjct: 605 SLNDYMGEGDAYKRARPF 622 >gi|217964533|ref|YP_002350211.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes HCC23] gi|217333803|gb|ACK39597.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes HCC23] gi|307570901|emb|CAR84080.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria monocytogenes L99] Length = 1443 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 427 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F + + +AHNA FD+GFIN +++ + + + + Sbjct: 485 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 543 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDFHD 600 Query: 189 EDRFFKEEKKTVPNISLL 206 + E Sbjct: 601 SLNDYMGEGDAYKRARPF 618 >gi|261207399|ref|ZP_05922085.1| DNA polymerase III [Enterococcus faecium TC 6] gi|289566679|ref|ZP_06447096.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium D344SRF] gi|260078290|gb|EEW65995.1| DNA polymerase III [Enterococcus faecium TC 6] gi|289161538|gb|EFD09421.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium D344SRF] Length = 1452 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 16/225 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + +F F+ P + + Sbjct: 427 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S ++ +AHNA FD+GF+N R I Sbjct: 483 DGMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARHGIPEAANPVIDTLEL 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R L L K++G++ H A+ D+ + + + Sbjct: 543 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 594 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + + + + KR +P I L ++ ++ L K Sbjct: 595 NMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 635 >gi|226223921|ref|YP_002758028.1| DNA polymerase III (alpha subunit) [Listeria monocytogenes Clip81459] gi|225876383|emb|CAS05092.1| Putative DNA polymerase III (alpha subunit) [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 1444 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F + + +AHNA FD+GFIN +++ + + + + Sbjct: 486 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187 + LN+L K++ I H A+ D+ + + K++ ++ N F Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHD 601 Query: 188 NEDRFFKEEKKTVPNISL 205 + + + E Sbjct: 602 SLNDYMGEGDAYKRARPF 619 >gi|254932365|ref|ZP_05265724.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262] gi|293583921|gb|EFF95953.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262] gi|328475042|gb|EGF45830.1| DNA polymerase III PolC [Listeria monocytogenes 220] Length = 1444 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F + + +AHNA FD+GFIN +++ + + + + Sbjct: 486 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187 + LN+L K++ I H A+ D+ + + K++ ++ N F Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHD 601 Query: 188 NEDRFFKEEKKTVPNISL 205 + + + E Sbjct: 602 SLNDYMGEGDAYKRARPF 619 >gi|146299725|ref|YP_001194316.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] gi|146154143|gb|ABQ04997.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] Length = 459 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG ++ RI EI + + D ++ + P + P L GI +E Sbjct: 6 YAIVDIETTGGNASGSRITEIAII-IHDGKNVLDRYETLVNPE-QDIPPSIFGLTGINNE 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + + P F I + + + ++AHN FD F++ +L++ Sbjct: 64 MVANAPIFDDISEKVLEMLTD--RIFVAHNVNFDYSFVHHQLEQAGFKW 110 >gi|257894713|ref|ZP_05674366.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408] gi|257831092|gb|EEV57699.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408] Length = 1450 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 16/225 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + +F F+ P + + Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S ++ +AHNA FD+GF+N R I Sbjct: 481 DEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLEL 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R L L K++G++ H A+ D+ + + + Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 592 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + + + + KR +P I L ++ ++ L K Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 633 >gi|218261817|ref|ZP_03476532.1| hypothetical protein PRABACTJOHN_02203 [Parabacteroides johnsonii DSM 18315] gi|218223763|gb|EEC96413.1| hypothetical protein PRABACTJOHN_02203 [Parabacteroides johnsonii DSM 18315] Length = 256 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 70/206 (33%), Gaps = 8/206 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG++ DRI+EI V++ + + ++T + P PE+ +HGITDE Sbjct: 10 VFFDLETTGINIVKDRIVEISFVKVYPNGKEESKT--RRINPE-MPIPPESTAIHGITDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P+F I + N L+ L+ + ID + Sbjct: 67 DVKDCPTFKEIAKSLATQIEGCDLAGYNSNRFDIPLLAEEFLRAGVDIDLNRRKFIDVQT 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + S ++ S + H A D+ +V + ++ Sbjct: 127 IFHK----MEQRTLSAAYKFYCDKSLENAHTAEADTMATYEVLKAQLDRYPELQNDIDFL 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 + Sbjct: 183 SKYSSYTNNVDFAGRMVYNDKGEEII 208 >gi|46907546|ref|YP_013935.1| DNA polymerase III PolC [Listeria monocytogenes serotype 4b str. F2365] gi|47093944|ref|ZP_00231681.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria monocytogenes str. 4b H7858] gi|254824621|ref|ZP_05229622.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194] gi|300765440|ref|ZP_07075422.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes FSL N1-017] gi|67460321|sp|Q720A2|DPO3_LISMF RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|46880814|gb|AAT04112.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria monocytogenes serotype 4b str. F2365] gi|47017682|gb|EAL08478.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria monocytogenes str. 4b H7858] gi|293593859|gb|EFG01620.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194] gi|300513877|gb|EFK40942.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes FSL N1-017] gi|328468603|gb|EGF39603.1| DNA polymerase III PolC [Listeria monocytogenes 1816] Length = 1444 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F + + +AHNA FD+GFIN +++ + + + + Sbjct: 486 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187 + LN+L K++ I H A+ D+ + + K++ ++ N F Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHD 601 Query: 188 NEDRFFKEEKKTVPNISL 205 + + + E Sbjct: 602 SLNDYMGEGDAYKRARPF 619 >gi|319764450|ref|YP_004128387.1| exonuclease rnase t and DNA polymerase iii [Alicycliphilus denitrificans BC] gi|330826666|ref|YP_004389969.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus denitrificans K601] gi|317119011|gb|ADV01500.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus denitrificans BC] gi|329312038|gb|AEB86453.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus denitrificans K601] Length = 221 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPN 51 + D ETTGL+ + D I+ IGAV ++ T+ ++ + P Sbjct: 42 WVALDCETTGLNPRTDEIVSIGAVRIVGERILTSERLELLVRPE 85 >gi|294507448|ref|YP_003571506.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8] gi|294343776|emb|CBH24554.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8] Length = 563 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 4/116 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG +DRI+EIGAV++ D + +R FQ + P + K+ GIT Sbjct: 8 FVVTDLETTGTTPDDDRIMEIGAVKVRDGAVVDR-FQQLVNPQ-QSVPGRITKMTGITTG 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + P + ++ F + +AHN FD F++AELQR+ + L + Sbjct: 66 MVFEAPPADEVLPDYRAFLGD--GILVAHNVSFDGSFLDAELQRMGDETLPNETLC 119 >gi|257878528|ref|ZP_05658181.1| DNA polymerase III [Enterococcus faecium 1,230,933] gi|293567721|ref|ZP_06679063.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1071] gi|294618725|ref|ZP_06698257.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1679] gi|294620761|ref|ZP_06699968.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium U0317] gi|257812756|gb|EEV41514.1| DNA polymerase III [Enterococcus faecium 1,230,933] gi|291589564|gb|EFF21370.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1071] gi|291595038|gb|EFF26383.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1679] gi|291599741|gb|EFF30751.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium U0317] Length = 1450 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 16/225 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + +F F+ P + + Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S ++ +AHNA FD+GF+N R I Sbjct: 481 DEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLEL 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R L L K++G++ H A+ D+ + + + Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 592 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + + + + KR +P I L ++ ++ L K Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 633 >gi|42527504|ref|NP_972602.1| DNA polymerase III domain-containing protein [Treponema denticola ATCC 35405] gi|41818089|gb|AAS12513.1| DNA polymerase III domain protein [Treponema denticola ATCC 35405] gi|325473756|gb|EGC76945.1| DNA polymerase III domain-containing protein [Treponema denticola F0402] Length = 217 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 6/161 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG ++K +R++EIG V+ R + V + P + PEA K++ ITDE L Sbjct: 18 AFDTETTGTEAKAERVVEIGCVKFDIRGVIAR-YNVLIDPE-KPMPPEAGKVNQITDEML 75 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +P F+ + +F DF +N +AHNA FD+ FIN EL+R K L Sbjct: 76 AGQPKFAEVLPDFLDFI--RNTVLVAHNASFDINFINCELERCGKTKLTNKVFDTLTFAR 133 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 L +L ++G+ + H A D+ + + + Sbjct: 134 ETLPGLQSYALQNLATQFGVQ--AVNAHRAEDDARVCMEFF 172 >gi|56477410|ref|YP_158999.1| nuclease subunit Cho of the excinuclease complex (UvrC homolog protein) [Aromatoleum aromaticum EbN1] gi|56313453|emb|CAI08098.1| Nuclease subunit Cho of the excinuclease complex (UvrC homolog protein) [Aromatoleum aromaticum EbN1] Length = 469 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 7/161 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D+ETTG + +DR+ EI + + R ++ + P R +L GITDE Sbjct: 8 VLIDVETTGANPVSDRVTEIAVLRIERGEIVGR-WESLVNPE-RPIPALIQRLVGITDEM 65 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P+F+ + + A ++AHNA+FD GFI E R+ + LS Sbjct: 66 VAGAPTFAELADSVRGHLDG--AVFVAHNARFDYGFIRNEFSRLGQQFEASVLCTVKLSR 123 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 A R+ L++L +R+G T ++H A+ D+ +L Sbjct: 124 A-LYPEHHRHGLDALIERHGFTC--GARHRAMGDTDVLWQF 161 >gi|293556647|ref|ZP_06675212.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039] gi|291601182|gb|EFF31469.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039] Length = 1450 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 16/225 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + +F F+ P + + Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S ++ +AHNA FD+GF+N R I Sbjct: 481 DEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLEL 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R L L K++G++ H A+ D+ + + + Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 592 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + + + + KR +P I L ++ ++ L K Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 633 >gi|332686697|ref|YP_004456471.1| DinG family ATP-dependent helicase YoaA [Melissococcus plutonius ATCC 35311] gi|332370706|dbj|BAK21662.1| DinG family ATP-dependent helicase YoaA [Melissococcus plutonius ATCC 35311] Length = 924 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 8/199 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG+D DRII+ G V + + + + PN R + L GI++ Sbjct: 7 YAVVDLETTGVDPTVDRIIQFGCVLIENGEIVS-HIGTDVNPN-RIIPKQIQHLTGISNA 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F I ++ + ++AHN FD F++ EL P IDT+ Sbjct: 65 RVQKAPYFEDIAIMIFNLLTD--TIFVAHNVHFDYRFLSHEL-VRCGLPPLTIDAIDTVE 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +A+ P+ R+ S + + H A D+ + ++ + +++ T Sbjct: 122 LAQIFLPTERSFRLSDLSSSLGLLHNHP-HQADSDAQVTAE--LLLIIEQKMYTLPLITM 178 Query: 189 EDRFFKEEKKTVPNISLLK 207 E E+ ++ Sbjct: 179 EKISQLGEQLVRQTGEYIQ 197 >gi|224499902|ref|ZP_03668251.1| DNA polymerase III PolC [Listeria monocytogenes Finland 1988] Length = 1444 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F + + +AHNA FD+GFIN +++ + + + + Sbjct: 486 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187 + LN+L K++ I H A+ D+ + + K++ ++ N F Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHD 601 Query: 188 NEDRFFKEEKKTVPNISL 205 + + + E Sbjct: 602 SLNDYMGEGDAYKRARPF 619 >gi|254828680|ref|ZP_05233367.1| polC [Listeria monocytogenes FSL N3-165] gi|254829923|ref|ZP_05234578.1| DNA polymerase III PolC [Listeria monocytogenes 10403S] gi|254898515|ref|ZP_05258439.1| DNA polymerase III PolC [Listeria monocytogenes J0161] gi|254911994|ref|ZP_05262006.1| DNA polymerase III [Listeria monocytogenes J2818] gi|254936321|ref|ZP_05268018.1| polC [Listeria monocytogenes F6900] gi|255026351|ref|ZP_05298337.1| DNA polymerase III PolC [Listeria monocytogenes FSL J2-003] gi|284801705|ref|YP_003413570.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578] gi|284994847|ref|YP_003416615.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923] gi|258601084|gb|EEW14409.1| polC [Listeria monocytogenes FSL N3-165] gi|258608911|gb|EEW21519.1| polC [Listeria monocytogenes F6900] gi|284057267|gb|ADB68208.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578] gi|284060314|gb|ADB71253.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923] gi|293589958|gb|EFF98292.1| DNA polymerase III [Listeria monocytogenes J2818] Length = 1444 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F + + +AHNA FD+GFIN +++ + + + + Sbjct: 486 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187 + LN+L K++ I H A+ D+ + + K++ ++ N F Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHD 601 Query: 188 NEDRFFKEEKKTVPNISL 205 + + + E Sbjct: 602 SLNDYMGEGDAYKRARPF 619 >gi|16803360|ref|NP_464845.1| DNA polymerase III PolC [Listeria monocytogenes EGD-e] gi|21263551|sp|Q8Y7G1|DPO3_LISMO RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|16410736|emb|CAC99398.1| polC [Listeria monocytogenes EGD-e] Length = 1444 Score = 66.9 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F + + +AHNA FD+GFIN +++ + + + + Sbjct: 486 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187 + LN+L K++ I H A+ D+ + + K++ ++ N F Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHD 601 Query: 188 NEDRFFKEEKKTVPNISL 205 + + + E Sbjct: 602 SLNDYMGEGDAYKRARPF 619 >gi|161986630|ref|YP_445565.2| hypothetical protein SRU_1441 [Salinibacter ruber DSM 13855] Length = 563 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 4/116 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG +DRI+EIGAV++ D S +R FQ + P + K+ GIT Sbjct: 8 FVVTDLETTGTTPDDDRIMEIGAVKVRDGSVVDR-FQQLVNPQ-QSVPGRITKMTGITTG 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + P + ++ F + +AHN FD F++AELQR+ + L + Sbjct: 66 MVFEAPPADEVLPDYRAFLGD--GILVAHNVSFDGSFLDAELQRMGDETLPNETLC 119 >gi|257900260|ref|ZP_05679913.1| DNA polymerase subunit III [Enterococcus faecium Com15] gi|257838172|gb|EEV63246.1| DNA polymerase subunit III [Enterococcus faecium Com15] Length = 295 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + I++IGA++ + +R +Q + P S K+ G+ E Sbjct: 124 YVVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQN-IKPFRSNISKRITKITGLELE 182 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P+F + F +AHNA FD+ F+ +L N + R+IDTL Sbjct: 183 DVVNMPTFEDFSPQLMSFI--SCYTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLP 240 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +ARR + + L +L + + H AL D + + VY Sbjct: 241 LARRHFETPNHKLITLKDYLNL---DNNSHDALEDCLVTNKVY 280 >gi|224501737|ref|ZP_03670044.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-561] Length = 1444 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 7/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F + + +AHNA FD+GFIN +++ + + + + Sbjct: 486 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKT 187 + LN+L K++ I H A+ D+ + + K++ ++ N F Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHD 601 Query: 188 NEDRFFKEEKKTVPNISL 205 + + + E Sbjct: 602 SLNDYMGEGDAYKRARPF 619 >gi|78355675|ref|YP_387124.1| DNA polymerase III subunit epsilon [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218080|gb|ABB37429.1| DNA polymerase III, epsilon subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 239 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 17/179 (9%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+E TGLD ++D I+ IGAV + T F ++ P R + A +H IT L+ Sbjct: 45 DMEMTGLDPEHDEIVAIGAVRIRGLSIITGDVFHTYVRPQ-RSMARPATLIHRITPAQLQ 103 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-----------NKDPLDP 120 P+ + + F D+ A H+ D+GF+ +R Sbjct: 104 HSPALAGLLPGFVDWC--GQALITGHHVGLDMGFLTRACRRHLGGAPATPCVDTMRLAQA 161 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 P+ L L RYG+ H AL D+ + +++ ++ Sbjct: 162 WERERWERSFDPFQPTVSYTLADLSARYGLPQFRA--HDALEDALQTAYLFLYLVRKLK 218 >gi|294613939|ref|ZP_06693874.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636] gi|291593214|gb|EFF24788.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636] Length = 1450 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 16/225 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + +F F+ P + + Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S ++ +AHNA FD+GF+N R I Sbjct: 481 DEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLEL 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R L L K++G++ H A+ D+ + + + Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 592 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + + + + KR +P I L ++ ++ L K Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 633 >gi|260205487|ref|ZP_05772978.1| hypothetical protein MtubK8_14429 [Mycobacterium tuberculosis K85] gi|289574877|ref|ZP_06455104.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289539308|gb|EFD43886.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] Length = 645 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%) Query: 9 KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +V D+ETTG + D I EIGAV++ + F + P P+ ++L Sbjct: 43 FVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRL 100 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT + + P+ ++ F++ ++ +AHNA FD+GF+ A +R + P Sbjct: 101 TGITTAMVGNAPTIDAVLPMFFE--FAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQV 158 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + R + ++ H AL D+ DV ++ Sbjct: 159 LCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIER 213 >gi|257884340|ref|ZP_05663993.1| DNA polymerase III [Enterococcus faecium 1,231,501] gi|257820178|gb|EEV47326.1| DNA polymerase III [Enterococcus faecium 1,231,501] Length = 1450 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 16/225 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + +F F+ P + + Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S ++ +AHNA FD+GF+N R I Sbjct: 481 DEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLEL 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R L L K++G++ H A+ D+ + + + Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 592 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + + + + KR +P I L ++ ++ L K Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 633 >gi|218753913|ref|ZP_03532709.1| hypothetical protein MtubG1_10964 [Mycobacterium tuberculosis GM 1503] Length = 493 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%) Query: 9 KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +V D+ETTG + D I EIGAV++ + F + P P+ ++L Sbjct: 35 FVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRL 92 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT + + P+ ++ F++ ++ +AHNA FD+GF+ A +R + P Sbjct: 93 TGITTAMVGNAPTIDAVLPMFFE--FAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQV 150 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + R + ++ H AL D+ DV ++ Sbjct: 151 LCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIER 205 >gi|254232344|ref|ZP_04925671.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|289750785|ref|ZP_06510163.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|124601403|gb|EAY60413.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|289691372|gb|EFD58801.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|323719091|gb|EGB28236.1| hypothetical protein TMMG_01471 [Mycobacterium tuberculosis CDC1551A] Length = 647 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%) Query: 9 KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +V D+ETTG + D I EIGAV++ + F + P P+ ++L Sbjct: 45 FVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRL 102 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT + + P+ ++ F++ ++ +AHNA FD+GF+ A +R + P Sbjct: 103 TGITTAMVGNAPTIDAVLPMFFE--FAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQV 160 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + R + ++ H AL D+ DV ++ Sbjct: 161 LCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIER 215 >gi|31793370|ref|NP_855863.1| hypothetical protein Mb2214 [Mycobacterium bovis AF2122/97] gi|121638072|ref|YP_978296.1| hypothetical protein BCG_2207 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990566|ref|YP_002645253.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo 172] gi|31618962|emb|CAD97067.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121493720|emb|CAL72195.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773679|dbj|BAH26485.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo 172] Length = 645 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%) Query: 9 KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +V D+ETTG + D I EIGAV++ + F + P P+ ++L Sbjct: 43 FVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRL 100 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT + + P+ ++ F++ ++ +AHNA FD+GF+ A +R + P Sbjct: 101 TGITTAMVGNAPTIDAVLPMFFE--FAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQV 158 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + R + ++ H AL D+ DV ++ Sbjct: 159 LCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIER 213 >gi|15609328|ref|NP_216707.1| hypothetical protein Rv2191 [Mycobacterium tuberculosis H37Rv] gi|148662008|ref|YP_001283531.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra] gi|148823398|ref|YP_001288152.1| hypothetical protein TBFG_12219 [Mycobacterium tuberculosis F11] gi|167969416|ref|ZP_02551693.1| hypothetical protein MtubH3_15860 [Mycobacterium tuberculosis H37Ra] gi|215403581|ref|ZP_03415762.1| hypothetical protein Mtub0_07840 [Mycobacterium tuberculosis 02_1987] gi|215411916|ref|ZP_03420690.1| hypothetical protein Mtub9_11341 [Mycobacterium tuberculosis 94_M4241A] gi|215427566|ref|ZP_03425485.1| hypothetical protein MtubT9_14751 [Mycobacterium tuberculosis T92] gi|215431125|ref|ZP_03429044.1| hypothetical protein MtubE_10707 [Mycobacterium tuberculosis EAS054] gi|215446420|ref|ZP_03433172.1| hypothetical protein MtubT_10948 [Mycobacterium tuberculosis T85] gi|219558170|ref|ZP_03537246.1| hypothetical protein MtubT1_13062 [Mycobacterium tuberculosis T17] gi|253798744|ref|YP_003031745.1| hypothetical protein TBMG_04035 [Mycobacterium tuberculosis KZN 1435] gi|254551229|ref|ZP_05141676.1| hypothetical protein Mtube_12318 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187187|ref|ZP_05764661.1| hypothetical protein MtubCP_14313 [Mycobacterium tuberculosis CPHL_A] gi|260201308|ref|ZP_05768799.1| hypothetical protein MtubT4_14636 [Mycobacterium tuberculosis T46] gi|289443698|ref|ZP_06433442.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289447819|ref|ZP_06437563.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289554022|ref|ZP_06443232.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289570307|ref|ZP_06450534.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289745464|ref|ZP_06504842.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis 02_1987] gi|294993576|ref|ZP_06799267.1| hypothetical protein Mtub2_03474 [Mycobacterium tuberculosis 210] gi|297634780|ref|ZP_06952560.1| hypothetical protein MtubK4_11686 [Mycobacterium tuberculosis KZN 4207] gi|297731771|ref|ZP_06960889.1| hypothetical protein MtubKR_11808 [Mycobacterium tuberculosis KZN R506] gi|298525683|ref|ZP_07013092.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|313659105|ref|ZP_07815985.1| hypothetical protein MtubKV_11818 [Mycobacterium tuberculosis KZN V2475] gi|1722908|sp|Q10384|Y2191_MYCTU RecName: Full=Uncharacterized protein Rv2191/MT2247 gi|1237044|emb|CAA94260.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|148506160|gb|ABQ73969.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra] gi|148721925|gb|ABR06550.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|253320247|gb|ACT24850.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 1435] gi|289416617|gb|EFD13857.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289420777|gb|EFD17978.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289438654|gb|EFD21147.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289544061|gb|EFD47709.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289685992|gb|EFD53480.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis 02_1987] gi|298495477|gb|EFI30771.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|326903805|gb|EGE50738.1| DNA polymerase III [Mycobacterium tuberculosis W-148] gi|328458507|gb|AEB03930.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 645 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%) Query: 9 KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +V D+ETTG + D I EIGAV++ + F + P P+ ++L Sbjct: 43 FVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRL 100 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT + + P+ ++ F++ ++ +AHNA FD+GF+ A +R + P Sbjct: 101 TGITTAMVGNAPTIDAVLPMFFE--FAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQV 158 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + R + ++ H AL D+ DV ++ Sbjct: 159 LCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIER 213 >gi|15841682|ref|NP_336719.1| hypothetical protein MT2247 [Mycobacterium tuberculosis CDC1551] gi|289754299|ref|ZP_06513677.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|308232063|ref|ZP_07414780.2| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis SUMu001] gi|308369651|ref|ZP_07418557.2| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis SUMu002] gi|308370940|ref|ZP_07423289.2| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis SUMu003] gi|308372166|ref|ZP_07427656.2| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis SUMu004] gi|308373349|ref|ZP_07431961.2| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis SUMu005] gi|308374520|ref|ZP_07436352.2| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis SUMu006] gi|308375805|ref|ZP_07668121.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis SUMu007] gi|308376938|ref|ZP_07668388.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis SUMu008] gi|308377937|ref|ZP_07480989.2| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis SUMu009] gi|308379142|ref|ZP_07485216.2| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis SUMu010] gi|308380293|ref|ZP_07489432.2| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis SUMu011] gi|308404461|ref|ZP_07493965.2| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis SUMu012] gi|13881937|gb|AAK46533.1| DNA polymerase III, epsilon subunit, putative [Mycobacterium tuberculosis CDC1551] gi|289694886|gb|EFD62315.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|308215084|gb|EFO74483.1| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis SUMu001] gi|308326837|gb|EFP15688.1| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis SUMu002] gi|308330190|gb|EFP19041.1| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis SUMu003] gi|308334026|gb|EFP22877.1| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis SUMu004] gi|308337834|gb|EFP26685.1| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis SUMu005] gi|308341594|gb|EFP30445.1| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis SUMu006] gi|308345002|gb|EFP33853.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis SUMu007] gi|308349313|gb|EFP38164.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis SUMu008] gi|308354021|gb|EFP42872.1| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis SUMu009] gi|308357963|gb|EFP46814.1| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis SUMu010] gi|308361897|gb|EFP50748.1| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis SUMu011] gi|308365560|gb|EFP54411.1| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis SUMu012] Length = 637 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%) Query: 9 KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +V D+ETTG + D I EIGAV++ + F + P P+ ++L Sbjct: 35 FVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRL 92 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT + + P+ ++ F++ ++ +AHNA FD+GF+ A +R + P Sbjct: 93 TGITTAMVGNAPTIDAVLPMFFE--FAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQV 150 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + R + ++ H AL D+ DV ++ Sbjct: 151 LCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIER 205 >gi|271965325|ref|YP_003339521.1| DNA polymerase III subunit epsilon-like protein [Streptosporangium roseum DSM 43021] gi|270508500|gb|ACZ86778.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease-like protein [Streptosporangium roseum DSM 43021] Length = 407 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 7/143 (4%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTGL NDR+IEIG V L + + + P +HGIT Sbjct: 10 YAVIDLETTGLRPSWNDRVIEIGIVHLDLSGEVTGEWATLVNPGRDLGP---QHIHGITA 66 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDT 126 ++ P+F I + + AHN FD GF++ E + PLD + + T Sbjct: 67 ADIRHAPAFGEIAGAVAERLDG--RVVAAHNLPFDAGFLSHEFGRLGLDTPLDHTAGVCT 124 Query: 127 LSIARRKHPSSRNDLNSLCKRYG 149 ++ + + P + L + C R G Sbjct: 125 MAWSAQFLPGAPRSLAACCARAG 147 >gi|227550341|ref|ZP_03980390.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium TX1330] gi|257886431|ref|ZP_05666084.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501] gi|227180543|gb|EEI61515.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium TX1330] gi|257822287|gb|EEV49417.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501] Length = 297 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + I++IGA++ + +R +Q + P S K+ G+ E Sbjct: 126 YVVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQN-IKPFRSNISKRITKITGLELE 184 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P+F + F +AHNA FD+ F+ +L N + R+IDTL Sbjct: 185 DVVNMPTFEDFSPQLMSFI--SCYTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLP 242 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +ARR + + L +L + + H AL D + + VY Sbjct: 243 LARRHFETPNHKLITLKDYLNL---DNNSHDALEDCLVTNKVY 282 >gi|307718875|ref|YP_003874407.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM 6192] gi|306532600|gb|ADN02134.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM 6192] Length = 198 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 8/169 (4%) Query: 8 RKIV--FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +++V FD+ETTGLD ++EI V+ F + + P E K+HGI Sbjct: 18 KEVVVTFDLETTGLDPVRHSVVEIACVKFQGGEP-RAFFSLLVKPP-HPIPAEVTKIHGI 75 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+ +++ P S+ F +AHNA FD+ F+ E R + R ID Sbjct: 76 GDQDVEEAPPLPSVLPMLESFVGT--HLLVAHNAPFDLSFLRMEYARCGRPYP-GFRAID 132 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T +AR P + R + I + H AL D+ D++ + Sbjct: 133 TRLLARSVLPHLGRYSLASLTRA-LDIPLQHHHRALSDAWACGDLFYAL 180 >gi|241759673|ref|ZP_04757773.1| DNA polymerase III subunit [Neisseria flavescens SK114] gi|241319681|gb|EER56077.1| DNA polymerase III subunit [Neisseria flavescens SK114] Length = 463 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 67/171 (39%), Gaps = 7/171 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG +S DRI E+ V T ++ + P R +L I DE Sbjct: 22 VVVDLETTGGNSYQDRITEVALVRFEQGRTT--HYEQLVNP-CRSIPEFVARLTEIHDET 78 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ P F+ I + A +AHN++FD F+ E RI+ D + + T+ + Sbjct: 79 VKNAPVFADIAGDLLPLLQG--AVVVAHNSRFDYTFLRHEFARIHTD--FAAPSLCTVQL 134 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +RR +P + L + + + Q Sbjct: 135 SRRLYPEFYKHSLDSIIERTGIQTANRHRAMTDVVALCDYLELSLAEKNHQ 185 >gi|226941443|ref|YP_002796517.1| DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9] gi|226716370|gb|ACO75508.1| Probable DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9] Length = 493 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG DRI EIG VE+ T + + P G+ P ++ GI+D Sbjct: 6 YVIVDLETTGGHITRDRITEIGLVEVSHGVTT--RWSQLVNP-GQPIPPFIEEMTGISDA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 + + P F+ + N IAHNA+FD GF+ E + Sbjct: 63 MVAEAPPFAELAPALLARLNG--KLLIAHNARFDYGFLKNEFR 103 >gi|150007345|ref|YP_001302088.1| DNA polymerase III subunit epsilon [Parabacteroides distasonis ATCC 8503] gi|255014024|ref|ZP_05286150.1| DNA polymerase III epsilon chain [Bacteroides sp. 2_1_7] gi|256839636|ref|ZP_05545145.1| DNA polymerase subunit III epsilon [Parabacteroides sp. D13] gi|262382080|ref|ZP_06075218.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_33B] gi|298375333|ref|ZP_06985290.1| exonuclease [Bacteroides sp. 3_1_19] gi|301310653|ref|ZP_07216592.1| exonuclease [Bacteroides sp. 20_3] gi|149935769|gb|ABR42466.1| DNA polymerase III epsilon chain [Parabacteroides distasonis ATCC 8503] gi|256738566|gb|EEU51891.1| DNA polymerase subunit III epsilon [Parabacteroides sp. D13] gi|262297257|gb|EEY85187.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_33B] gi|298267833|gb|EFI09489.1| exonuclease [Bacteroides sp. 3_1_19] gi|300832227|gb|EFK62858.1| exonuclease [Bacteroides sp. 20_3] Length = 256 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 69/206 (33%), Gaps = 8/206 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG++ DRI+EI V++ + + +T + P G PE+ +HGITDE Sbjct: 10 VFFDLETTGINIVKDRIVEISYVKVFPNGKEETKT--RRINP-GMPIPPESTAIHGITDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P+F I + N L+ L+ + ID + Sbjct: 67 DVKDCPTFKEIAKSLATQIEGCDLAGYNSNRFDIPMLAEEFLRAGVDIDLNRRKFIDVQT 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + S ++ S + H A D+ +V + + Sbjct: 127 IFHK----MEQRTLSAAYKFYCNKSLENAHTAEADTLATYEVLKAQLDRYPDLKNDVAFL 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 + Sbjct: 183 SQYSCYSNNVDFAGRMVYNDKGEEVI 208 >gi|69246860|ref|ZP_00604152.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium DO] gi|257882946|ref|ZP_05662599.1| DNA polymerase III [Enterococcus faecium 1,231,502] gi|257889275|ref|ZP_05668928.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410] gi|260560113|ref|ZP_05832291.1| DNA polymerase III [Enterococcus faecium C68] gi|293560202|ref|ZP_06676704.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1162] gi|314937503|ref|ZP_07844836.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04] gi|314942162|ref|ZP_07849016.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C] gi|314947498|ref|ZP_07850913.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082] gi|314951485|ref|ZP_07854534.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A] gi|314992575|ref|ZP_07857993.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B] gi|314995490|ref|ZP_07860590.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01] gi|68195041|gb|EAN09504.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium DO] gi|257818604|gb|EEV45932.1| DNA polymerase III [Enterococcus faecium 1,231,502] gi|257825635|gb|EEV52261.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410] gi|260073948|gb|EEW62272.1| DNA polymerase III [Enterococcus faecium C68] gi|291605874|gb|EFF35306.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1162] gi|313590324|gb|EFR69169.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01] gi|313592867|gb|EFR71712.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B] gi|313596325|gb|EFR75170.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A] gi|313599085|gb|EFR77930.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C] gi|313643144|gb|EFS07724.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04] gi|313646048|gb|EFS10628.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082] Length = 1452 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 16/225 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + +F F+ P + + Sbjct: 427 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S ++ +AHNA FD+GF+N R I Sbjct: 483 DGMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLEL 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R L L K++G++ H A+ D+ + + + Sbjct: 543 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 594 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + + + + KR +P I L ++ ++ L K Sbjct: 595 NMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 635 >gi|257889197|ref|ZP_05668850.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733] gi|257825269|gb|EEV52183.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733] Length = 295 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + I++IGA++ + +R +Q + P S K+ G+ E Sbjct: 124 YVVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQN-IKPFRSNISKRITKITGLELE 182 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P+F + F +AHNA FD+ F+ +L N + R+IDTL Sbjct: 183 DVVNMPTFEDFSPQLMSFI--SCYTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLP 240 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +ARR + + L +L + + H AL D + + VY Sbjct: 241 LARRHFETPNHKLITLKDYLNL---DNNSHDALEDCLVTNKVY 280 >gi|332525056|ref|ZP_08401237.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2] gi|332108346|gb|EGJ09570.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2] Length = 645 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 8/167 (4%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGL+ D II+IGA ++ + +F+ + P R + +HGIT Sbjct: 457 VFDTETTGLEPSAGDEIIQIGATRIVAGKLRRHESFEQLVDPQ-RAIPERTVAIHGITPA 515 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P+ + + +AHNA FD+ F+ + + P LS Sbjct: 516 MVAGQPTIREVLPALHA--FAHDTVLVAHNAAFDLRFLELKERAAGVRFDMPVLDTLLLS 573 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + R+ L ++ +R G+ +H AL D+ + ++V++KM+ Sbjct: 574 QVLHPN-QERHSLEAIAERLGVP--VLGRHTALGDAIVTAEVFLKMI 617 >gi|116872751|ref|YP_849532.1| DNA polymerase III PolC [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466238|sp|A0AIC1|DPO3_LISW6 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116741629|emb|CAK20753.1| DNA polymerase III [Listeria welshimeri serovar 6b str. SLCC5334] Length = 1444 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F + + +AHNA FD+GFIN +++ + D + + Sbjct: 486 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKADNAVVDTLEL 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDINFHD 601 Query: 189 EDRFFKEEKKTVPNISLL 206 + E Sbjct: 602 SLNDYMGEGDAYKRARPF 619 >gi|256617164|ref|ZP_05474010.1| DNA polymerase III [Enterococcus faecalis ATCC 4200] gi|256596691|gb|EEU15867.1| DNA polymerase III [Enterococcus faecalis ATCC 4200] Length = 1440 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 72/199 (36%), Gaps = 8/199 (4%) Query: 9 KIVFDIETT-GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETT GL + D IIE+ AV++ + TF+ F+ P + ++ Sbjct: 414 YVVFDVETTTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDPG---HPLSQTTINLTGI 469 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + S S + +AHNA FD+GF+N + I Sbjct: 470 TDEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLE 529 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFK 186 + LN+L K++G+ H A+ DS +I + + F Sbjct: 530 LSRFLYPHFKSHRLNTLSKKFGVN--LEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFH 587 Query: 187 TNEDRFFKEEKKTVPNISL 205 + +R E Sbjct: 588 DDLNRHIGEGDSYKRARPF 606 >gi|239986791|ref|ZP_04707455.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 11379] gi|291443743|ref|ZP_06583133.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] gi|291346690|gb|EFE73594.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] Length = 343 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 80/211 (37%), Gaps = 10/211 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + P P + +HG+T + Sbjct: 21 YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNPER---DPGPVWIHGLTSD 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + E + +AHNA FD I E R + R+ Sbjct: 77 VLEGAPLFPEVAEELSARLAD--RVLVAHNAAFDWSMIAREYARASVVAPVEQRLCTIAL 134 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + P + L SL +G+ + H AL D+ +L++ + + ++ Sbjct: 135 AKELRLPLPNHKLASLAAHFGVV--QQQAHHALDDARVLAEAFRPSLHAAARGGVRLPLL 192 Query: 189 EDRFFKEEKKT--VPNISLLKRDKPLFTRIT 217 E R E + P + +P R + Sbjct: 193 ECRPLTEWSDSPVTPRVGYRAVRQPNSWRPS 223 >gi|239940309|ref|ZP_04692246.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] Length = 341 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 80/211 (37%), Gaps = 10/211 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + P P + +HG+T + Sbjct: 19 YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNPER---DPGPVWIHGLTSD 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + E + +AHNA FD I E R + R+ Sbjct: 75 VLEGAPLFPEVAEELSARLAD--RVLVAHNAAFDWSMIAREYARASVVAPVEQRLCTIAL 132 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + P + L SL +G+ + H AL D+ +L++ + + ++ Sbjct: 133 AKELRLPLPNHKLASLAAHFGVV--QQQAHHALDDARVLAEAFRPSLHAAARGGVRLPLL 190 Query: 189 EDRFFKEEKKT--VPNISLLKRDKPLFTRIT 217 E R E + P + +P R + Sbjct: 191 ECRPLTEWSDSPVTPRVGYRAVRQPNSWRPS 221 >gi|313633403|gb|EFS00239.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria seeligeri FSL N1-067] Length = 1452 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 436 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 493 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F + + +AHNA FD+GFIN +++ + + + Sbjct: 494 MVKGSDPIDVVLKRFKE--WSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLEL 551 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 552 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLGWKLIKDAKEMHDIDYHD 609 Query: 189 EDRFFKEEKKTVPNISLL 206 + E Sbjct: 610 SLNDYMGEGDAYKRARPF 627 >gi|257897430|ref|ZP_05677083.1| DNA polymerase subunit III [Enterococcus faecium Com12] gi|257833995|gb|EEV60416.1| DNA polymerase subunit III [Enterococcus faecium Com12] Length = 291 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + I++IGA++ + +R +Q + P S K+ G+ E Sbjct: 124 YVVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQN-IKPFRSNISKRITKITGLELE 182 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P+F + F +AHNA FD+ F+ +L N + R+IDTL Sbjct: 183 DVVNMPTFEDFSPQLMSFI--SCYTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLP 240 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +ARR + + L +L + + H AL D + + VY Sbjct: 241 LARRHFETPNHKLITLKDYLNL---DNNSHDALEDCLVTNKVY 280 >gi|220926351|ref|YP_002501653.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] gi|219950958|gb|ACL61350.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] Length = 296 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 65/231 (28%), Gaps = 17/231 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT------FQVFLCPNGRKNSPEALKLHG 64 + D ETTGLD D +IE+G + + R F P R E +L G Sbjct: 43 ILDTETTGLDPAADEVIELGIIAFTYG-PSGRIHRVRHRFNQLQQP-ARPIPEEVTRLTG 100 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITD + + + + IAHNA+FD A S Sbjct: 101 ITDADVAGRRI----DDRAVEALAARARVVIAHNARFDRRMCEARWPVFAGLNWACSCHQ 156 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-----VYIKMMVGGS 179 + L + + L +M Sbjct: 157 IPWREEGHEAARLGGLLADHGYFHNGHRAIDDCEALLWLLARPLKRSGRLALATLMEAAR 216 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 + ++ F +++ N R + + + + +L+ + Sbjct: 217 RPTVRLWASDAPFALKDRLKDRNYRWSSRRRCWYIDLDEAQLEIERSFLSR 267 >gi|16800425|ref|NP_470693.1| DNA polymerase III PolC [Listeria innocua Clip11262] gi|21263558|sp|Q92C34|DPO3_LISIN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|16413830|emb|CAC96588.1| polC [Listeria innocua Clip11262] gi|313619136|gb|EFR90925.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria innocua FSL S4-378] Length = 1444 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + +F + + +AHNA FD+GFIN +++ + + + Sbjct: 486 MVKGSDPIDVVLKQFRE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAKNAVVDTLEL 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIEFHD 601 Query: 189 EDRFFKEEKKTVPNISLL 206 + E Sbjct: 602 SLNDYMGEGDAYKRARPF 619 >gi|313638095|gb|EFS03362.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria seeligeri FSL S4-171] Length = 1444 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F + + +AHNA FD+GFIN +++ + + + Sbjct: 486 MVKGSDPIDVVLKRFKE--WSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLEL 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLGWKLIKDAKEMHDIDYHD 601 Query: 189 EDRFFKEEKKTVPNISLL 206 + E Sbjct: 602 SLNDYMGEGDAYKRARPF 619 >gi|289434601|ref|YP_003464473.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170845|emb|CBH27387.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 1444 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F + + +AHNA FD+GFIN +++ + + + Sbjct: 486 MVKGSDPIDVVLKRFKE--WSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLEL 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 544 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLGWKLIKDAKEMHDIDYHD 601 Query: 189 EDRFFKEEKKTVPNISLL 206 + E Sbjct: 602 SLNDYMGEGDAYKRARPF 619 >gi|25011356|ref|NP_735751.1| hypothetical protein gbs1312 [Streptococcus agalactiae NEM316] gi|24412894|emb|CAD46971.1| Unknown [Streptococcus agalactiae NEM316] Length = 604 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 6/212 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R I FDIET GL+S+ DRI+E+GAV + +++ + S + + Sbjct: 46 INFIKNRFIAFDIETPGLNSQQDRIVEVGAVLFENGKVV-DSYESLVN-AKVNISADVTR 103 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAE-LQRINKDP 117 L+ IT+ +K+ PS + ++ E +F + AHNAKFD+GF+ + Sbjct: 104 LNNITNRMIKNAPSENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLGYNGE 163 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + + + + + + SHR+K A++ ++L+ ++ + Sbjct: 164 IKYLDTLSLSRKNVKGLRNYKQNTVAEYFNLQNKNSHRAKSDAIICGNILTKLFFIIENQ 223 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209 S+ +F K N+ + E V + +R Sbjct: 224 KSRKSFSSKNNKISPEELEVCAVIQNIIFERK 255 >gi|77407162|ref|ZP_00784150.1| exonuclease, putative [Streptococcus agalactiae H36B] gi|77174231|gb|EAO77112.1| exonuclease, putative [Streptococcus agalactiae H36B] Length = 124 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 I K R I FDIETTGL+S+ DRI+E+GAV + +++ + Sbjct: 46 INFIKNRFIAFDIETTGLNSQQDRIVEVGAVLFENGKVV-DSYESLVN 92 >gi|125625168|ref|YP_001033651.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris MG1363] gi|124493976|emb|CAL98973.1| DNA polymerase III alpha subunit [Lactococcus lactis subsp. cremoris MG1363] gi|300071977|gb|ADJ61377.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris NZ9000] Length = 1635 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 69/195 (35%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + + F F+ P R + D Sbjct: 593 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINPGYRLSEFTTELTGITDDH 651 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 KP + + + +AHNA FDVGF+N R + ++ Sbjct: 652 VKNAKPLYEVLTKFQK---FCEGTILVAHNASFDVGFMNMNYSRNGLPIISQPVVDTLEF 708 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + + + G+ H + A LL ++ + + Sbjct: 709 ARNLYPEMKRFGLGQLTKKFQIGLEHHHMANFDAEATGRLLFVFLEELRTRNTGWTSLLE 768 Query: 187 TNEDRFFKEEKKTVP 201 N ++ K V Sbjct: 769 LNAKLVSEDSYKKVR 783 >gi|163845121|ref|YP_001622776.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445] gi|163675844|gb|ABY39954.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] Length = 332 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 23/234 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ + IIEIGAV D F L + E ++ GI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEIARITGI 133 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE +K + D + IAHNA FD F+ +R++ + Sbjct: 134 TDEMVKGRTIPRDEL----DALIAEADIIIAHNAGFDRPFL----ERLSIAFANKPWACS 185 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------YIKMMVGG 178 I L L + G + + + +++ Sbjct: 186 VKEIDWTARGFEGTKLGYLIGQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELLKAS 245 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 + F ++ R K +T + ++EL+ + + Sbjct: 246 QRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYL 299 >gi|29840147|ref|NP_829253.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC] gi|29834495|gb|AAP05131.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC] Length = 228 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 7/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG DRIIEI A + T ++F ++ P EA K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRIIEIAAY----NNVTKQSFVTYVNPE-IPIPEEASKIHGITTST 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P F + +F DF + +N FD + E +R + +PL I Sbjct: 60 VSSAPKFPEAYKQFCDFCGNEAILVAHNNDSFDFPLLEKECRRHSLEPLSLRTIDSLKWA 119 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + +++L L + YG H AL D L +V+ ++ Sbjct: 120 QKYRPDLPKHNLQYLRQVYGFA--ENQAHRALDDVITLYNVFSALIGD 165 >gi|293402030|ref|ZP_06646169.1| DNA polymerase III, alpha subunit, Gram-positive type [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304422|gb|EFE45672.1| DNA polymerase III, alpha subunit, Gram-positive type [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 1443 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 6/228 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL S+ D IIE G + D + ++ Q+F+ P S +L I++E Sbjct: 396 YCVFDLETTGLSSRFDHIIEFGGQIMKDRTCI-KSLQLFVKPPIA-LSAFTTELTNISEE 453 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ F+ E +F + + +AHNA FD GF+NAEL+RI + PL + +IDTL Sbjct: 454 NMKNAKPFAECVDEILEFIGD--SILVAHNASFDYGFLNAELERIGRKPL-MNPVIDTLD 510 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-FGFKT 187 +AR L +L ++YGI H A D+ +L+ V++ M+ I Sbjct: 511 LARSMMDRKGYRLGNLARQYGIRYDEDVAHRADYDAEVLAQVFMHMLNDLKHIKTLKQLQ 570 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + K ++++L ++ + + H + + K+ Sbjct: 571 DMQDPDCFNKVRDKHVTILAKNMAGLKELFELITLSHTEYLSYNRKST 618 >gi|269956916|ref|YP_003326705.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM 15894] gi|269305597|gb|ACZ31147.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica DSM 15894] Length = 547 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 7/173 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL + DR+IE+ + L +T + L P + A +HGITD Sbjct: 49 FAVVDVETTGLSPRYDRVIEVAILRLDTNGRTVDEWSTRLNPQR---TVGATWIHGITDA 105 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + PSF+ + ++ A ++ HNA+FD GF+ AEL R D +P+ + Sbjct: 106 DVAHAPSFADVAAQVAQRLTG--AVFVGHNARFDAGFVLAELTRAGWDAPEPTIWCTQAA 163 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +S L + GI T +H + A + +L+ Sbjct: 164 SHHWLPDASSRRLVDVAAAAGISLTHAHSALGDARATAAMLTRYIGASTGVDR 216 >gi|304403858|ref|ZP_07385520.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus YK9] gi|304346836|gb|EFM12668.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus YK9] Length = 244 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 56/176 (31%), Gaps = 6/176 (3%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITD 67 IVFD+ETTG D II GAV + +F + P R+ +L GIT+ Sbjct: 61 IVFDLETTGFYPYNGDEIISFGAVLVKGDEIFEDVSFYSLVNPK-RRIPMHITQLTGITN 119 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ P + +F +F + + Sbjct: 120 EMVEGAPDLMQVLHDFMEFVGRRILLAHGSGHDKQFLNAALWRTSKVNLTHRLLDTMMVA 179 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 K P I +H AL DS + + +++ + + N Sbjct: 180 KWLEPKRPDGYGLDE---LLESANIPIADRHHALKDSIMTAKLWMAYLKKIQERNI 232 >gi|116694719|ref|YP_728930.1| exconuclease [Ralstonia eutropha H16] gi|113529218|emb|CAJ95565.1| Exconuclease [Ralstonia eutropha H16] Length = 528 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 6/105 (5%) Query: 8 RKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IVF D+ETTG D++ DRI EIG VE+ + L P G P ++ GIT Sbjct: 28 RPIVFVDLETTGADAQRDRITEIGVVEVGPDGII--EWDTLLDP-GMSIPPFIQRMTGIT 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 +E ++ +PSF S+ + ++AHNA+FD GF+ + Sbjct: 85 EEMVRGQPSFESLAESLAERLQG--RLFVAHNARFDYGFLKNAFR 127 >gi|111018139|ref|YP_701111.1| hypothetical protein RHA1_ro01126 [Rhodococcus jostii RHA1] gi|110817669|gb|ABG92953.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1] Length = 588 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 62/167 (37%), Gaps = 4/167 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG D I EIGAV++ + P GR P +++ GIT Sbjct: 24 FVVVDLETTGARPGEDAITEIGAVKIRGGEVIAEM-ATLVDP-GRSIPPHIVEITGITTA 81 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P + F + + A +AHNA FD GF+ A + + + Sbjct: 82 MVIDAPRIERVLPAFLE--FARGAVLVAHNAPFDTGFLKAAASATDTPWPKFTVLCTVKL 139 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + + H AL D+ DV ++ Sbjct: 140 ARRVLSRDEAPSVKLSSLARLFDVGTTPTHRALDDARATVDVLHALI 186 >gi|315282169|ref|ZP_07870636.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria marthii FSL S4-120] gi|313614186|gb|EFR87863.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria marthii FSL S4-120] Length = 1367 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 427 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F + + +AHNA FD+GFIN +++ + + + + Sbjct: 485 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 543 ARFLYPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDFHD 600 Query: 189 EDRFFKEEKKTVPNISLL 206 + E Sbjct: 601 SLNDYMGEGDAYKRARPF 618 >gi|162447117|ref|YP_001620249.1| DNA polymerase III subunit alpha [Acholeplasma laidlawii PG-8A] gi|161985224|gb|ABX80873.1| DNA polymerase III alpha subunit [Acholeplasma laidlawii PG-8A] Length = 1504 Score = 66.5 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 67/183 (36%), Gaps = 18/183 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTG D+IIEI A ++ R F+V + P + S ++ ITDE + Sbjct: 414 VFDIETTGFSFTRDKIIEIAAYKVRGGFIAER-FEVLINPEEQ-LSETTKRITNITDEMV 471 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +++ + + F +F + + + L + +P ++ Sbjct: 472 ENEKTIEEVLPTFLEFIKGTVLVAHNASFDIGFIYEKSRLLGLQHEPFAVIDTLNIARYF 531 Query: 131 RRKHPSSRNDLNSLCKRYGITI----------------SHRSKHGALLDSHLLSDVYIKM 174 +N G + + H A+ D++ ++V++ M Sbjct: 532 YNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLEAHHRAIYDAYATAEVFLNM 591 Query: 175 MVG 177 + Sbjct: 592 LQD 594 >gi|116513078|ref|YP_811985.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris SK11] gi|116108732|gb|ABJ73872.1| DNA polymerase III catalytic subunit, PolC type [Lactococcus lactis subsp. cremoris SK11] Length = 1635 Score = 66.5 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 69/195 (35%), Gaps = 6/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + + F F+ P R + D Sbjct: 593 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINPGYRLSEFTTELTGITDDH 651 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 KP + + + +AHNA FDVGF+N R + ++ Sbjct: 652 VKNAKPLYEVLTKFQK---FCEGTILVAHNASFDVGFMNMNYSRNGLPIISQPVVDTLEF 708 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + + + G+ H + A LL ++ + + Sbjct: 709 ARNLYPEMKRFGLGQLTKKFQIGLEHHHMANFDAEATGRLLFVFLEELRTRNTGWTSLLE 768 Query: 187 TNEDRFFKEEKKTVP 201 N ++ K V Sbjct: 769 LNAKLVSEDSYKKVR 783 >gi|239932092|ref|ZP_04689045.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291440458|ref|ZP_06579848.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291343353|gb|EFE70309.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] Length = 327 Score = 66.5 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 72/190 (37%), Gaps = 8/190 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ L + + + P P + +HG+T E Sbjct: 23 YAVVDVETTGL-ARDDRIVSAAVYRLDARGEVEDHWYTVVNPER---DPGPVWIHGLTSE 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + EF +AHNA FD I E R + R+ Sbjct: 79 ALEGAPLFRDVAEEFATRLEG--RVLVAHNAVFDWQMIAREYARARSEAPVKQRLCTIAL 136 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 P + L SL +G+ H AL D+ +L++ + + + + Sbjct: 137 SKELGLPLPNHKLESLAAHFGVVQRRA--HHALDDARVLAEAFRPSLRAAAASGVRLPLH 194 Query: 189 EDRFFKEEKK 198 E R E Sbjct: 195 ECRPLTEWTD 204 >gi|300933403|ref|ZP_07148659.1| exonuclease, RNase T and DNA polymerase III [Corynebacterium resistens DSM 45100] Length = 1144 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 40/127 (31%), Positives = 54/127 (42%), Gaps = 6/127 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+ETTG K DR+IEIG V L RT++ + PN R + H +T Sbjct: 6 RYAVIDLETTGFS-KTDRVIEIGVVLLDQAGNVERTWETIVQPN-RDIPNSFV--HKLTP 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L P F I E + IAHNA FD+ F+ +E +RI + Sbjct: 62 SHLVHAPLFEEIAEELAE--ILHGRTIIAHNAPFDIRFLTSEFERIGVALPAYGAWVHDT 119 Query: 128 SIARRKH 134 R+ Sbjct: 120 LPLCRQC 126 >gi|330718588|ref|ZP_08313188.1| Rad3-related DNA helicase [Leuconostoc fallax KCTC 3537] Length = 798 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 70/211 (33%), Gaps = 8/211 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M+ N +V D+ETTG + RII+IG + F+ F+ P G+ + Sbjct: 4 MMNAND-SFVVVDLETTGQSVDRGGRIIQIGMTFIKKRKIV-DHFETFVNP-GQLIDRQI 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L I+ ++ P F I + N + E ++ + Sbjct: 61 QQLTHISQNEVQHAPYFEEIAPVIHTLLKDSVIIAHNVNFDYPYLNEEFERAGLSPLDIP 120 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + I P R + + I + H A D+H +++++ + Sbjct: 121 AIDTVMLSQILLPTAPGYRLVDLTQY----LDIKLSNAHRANEDAHATAELFLSLWRLAE 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 Q+ + + + L R K Sbjct: 177 QLPAQTLQQLQQGQWQLLRQTQAFLQLVRPK 207 >gi|218134802|ref|ZP_03463606.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC 43243] gi|217990187|gb|EEC56198.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC 43243] Length = 237 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 4/98 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + DRIIE+GA ++ + F F+ P SP L GITDE Sbjct: 5 YVAIDLETTGTNPAEDRIIEVGAAKVECGRVVS-IFSTFVNPQ-ISISPRITSLTGITDE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 + P + I ++ ++ + HN FD FI Sbjct: 63 DVAGAPVIADIIADMIA--YTKDVPILGHNVIFDYSFI 98 >gi|86142317|ref|ZP_01060827.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella blandensis MED217] gi|85831069|gb|EAQ49526.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella blandensis MED217] Length = 257 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 9/214 (4%) Query: 2 IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 + N R I FD+ETTG++ DRI+EI +++L + + T+ + P PE Sbjct: 1 MNLNLTRPICFFDLETTGINVAKDRIVEISVLKVLPNGKEEKHTW--LVNP-TIPIPPET 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGI DE + DKP+F + +E + + + N L+ + Sbjct: 58 TAVHGIKDEDVADKPTFKELANEIHNLIKDSDLAGFNSNRFDIPLLAEEMLRAEVDFDMK 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ID +I + S ++ + H A D+ +V + Sbjct: 118 NRNAIDVQTIFHK----MEQRTLSAAYKFYCDQTLEDAHSAEADTIATYEVLKSQLDRYE 173 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 + K+ + +++ +D Sbjct: 174 DLENNMKSLAEFSARKKFADFAGFIAFNKDGEEV 207 >gi|326692531|ref|ZP_08229536.1| Rad3-related DNA helicase [Leuconostoc argentinum KCTC 3773] Length = 801 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 7/174 (4%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTG ++ RII+IG + + F+ F+ P G+ +L I++ Sbjct: 7 FVVVDLETTGQSVARGGRIIQIGMTFIKNRRIV-DHFESFVNP-GQPIDRNIQQLTHISE 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++D P F I + + IAHN FD ++N EL R L+ I Sbjct: 65 KDVRDAPYFEEIVPVLRNMLQD--TVLIAHNINFDYPYLNDELARTGFPVLNNPAIDTVQ 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + L L IT + H A D+ + +++K+ Q+ Sbjct: 123 LAQILLPTAPGYRLLDLTTFLNIT--LNNAHRANADAQATALLFLKLWQKAEQL 174 >gi|313672733|ref|YP_004050844.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM 19672] gi|312939489|gb|ADR18681.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM 19672] Length = 195 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 8/186 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT--NRTFQVFLCPNGRKNSPEALKLHGI 65 IV D+ETTG+ K +I+EI A+++ K +F + P A ++H I Sbjct: 11 FIVIDLETTGISPYKGAKIVEIAALKIEKGLKINPKNSFYSLVNP-LIPIPYSAYRVHKI 69 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++E +KD P+ + +F +F + N FD FI N + I Sbjct: 70 SNEIVKDYPTIEKVLPKFLEFLDTPFII--GQNISFDYSFIKYFSDLYNFRLKEFIIIDT 127 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRS--KHGALLDSHLLSDVYIKMMVGGSQINF 183 + R +L++L +GI + +H A D + + ++IK + Sbjct: 128 INIAKKIAPNLKRYNLDNLITYFGIENILGNGKRHRADFDIYATALIFIKSIEIIENYKI 187 Query: 184 GFKTNE 189 K ++ Sbjct: 188 DLKISD 193 >gi|325847082|ref|ZP_08169908.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481054|gb|EGC84099.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 1010 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 7/182 (3%) Query: 15 ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP 74 ETTGL +D+I EIGAV++ + T F + P + + ++L GIT+E + DKP Sbjct: 2 ETTGLYKYSDKITEIGAVKVENGEIT-EVFNELVNPE-KMIPEKVVELTGITNEMVMDKP 59 Query: 75 SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH 134 I +F + ++A ++ N FD+GF+ N +DTL +AR Sbjct: 60 KIDEILPKFLE--FSKDAYFVGQNTDFDIGFVK--EACDNLSYQFEPIYLDTLPMARAVF 115 Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFK 194 PS + + + + H A D+ + V+IK+ N ++ K Sbjct: 116 PSMGRFSLDKLAKK-LAVGPFNHHRASDDAMTTAKVFIKLFEKIKDKNKDLSLSKINSIK 174 Query: 195 EE 196 + Sbjct: 175 TK 176 >gi|254821932|ref|ZP_05226933.1| hypothetical protein MintA_18512 [Mycobacterium intracellulare ATCC 13950] Length = 323 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +V D+ETTG +K+ D I EIGAV++ F + P R P+ ++L Sbjct: 17 FVVVDLETTGGRTKSAAGTEPDAITEIGAVKVRGGVVLGE-FATLIDPQ-RSIPPQVVRL 74 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDPS 121 GIT + D P+ ++ F +F A +AHNA FD+GF+ A QR + P Sbjct: 75 TGITTAMVSDAPTIDAVLPMFLEFARLDQGAVLVAHNAGFDIGFLRAAAQRCDIAWPRPQ 134 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + R + ++ + H AL D+ DV ++ Sbjct: 135 VLCTVRLARRVLSREEAPSVRLASLARLFAVTTQPTHRALDDARATVDVLHALIER 190 >gi|311742833|ref|ZP_07716641.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM 15272] gi|311313513|gb|EFQ83422.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM 15272] Length = 569 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 5/111 (4%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG K RI EIGAV + FQ + P+ L GITD+ Sbjct: 34 VVDLETTGGSPQKGSRITEIGAVLVRGGEVLGE-FQTLVNPD-ESIPAFITVLTGITDQM 91 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + P + F + + + +AHNA FD GF+ + Sbjct: 92 VVQAPRIAEALPSFLE--FARGSVLVAHNAPFDTGFLRHAAAELQIPWPRF 140 >gi|308069470|ref|YP_003871075.1| DnaQ family exonuclease/DinG family helicase, [Paenibacillus polymyxa E681] gi|305858749|gb|ADM70537.1| DnaQ family exonuclease/DinG family helicase, putative [Paenibacillus polymyxa E681] Length = 955 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 6/194 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ V D ETTG S +D II++G + + +R + ++ P GR P L GIT Sbjct: 1 MKFAVLDFETTGTQSADD-IIQVGLAIIDHDNSISRVYGSYVNP-GRSIPPFITGLTGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ +KD P+ + E ++ + HN FD F+ L R RI+DT Sbjct: 59 DDDVKDAPALEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYL-PFSGRILDT 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + + PS + R H A D+ ++V++K + + Sbjct: 116 MDFLKIMFPSLSSYQLGFVSSEFELAHDRP-HQADSDALATAEVFLKCLGELQALPLITI 174 Query: 187 TNEDRFFKEEKKTV 200 F EE + Sbjct: 175 QRLSDLFAEEDSDL 188 >gi|297621916|ref|YP_003710053.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044] gi|297377217|gb|ADI39047.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044] Length = 249 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 81/227 (35%), Gaps = 11/227 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K + + D ETTGLD K DR+IE+ V K F+ + P R ++ +H I Sbjct: 6 KQQFVCLDCETTGLDPKEDRVIEVACVAFTLEEKL-DAFETLIDPE-RDIPETSIAIHHI 63 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + + KP + + DF + ++ + L + ID Sbjct: 64 TQKMVAGKPKVKEVLPKVLDFVGSHIIVGHGIQFDIEA-ISHSCDRAGISKNLRDNPFID 122 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-FG 184 TL +AR S N L L K + I H A+ D + +V+ +++ G S + Sbjct: 123 TLRMARLYGESPINSLEHLRKHFNIESEIA--HRAMSDVMVNIEVFKQLLKGYSSLKQLN 180 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 + KE K + R H Q L Sbjct: 181 KILAKPIMLKEMPLGKHKGRPFKEIPVQYLR-----WAAHQDFDQDL 222 >gi|258615946|ref|ZP_05713716.1| DNA polymerase III PolC [Enterococcus faecium DO] Length = 663 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 16/225 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + +F F+ P + + Sbjct: 427 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S ++ +AHNA FD+GF+N R I Sbjct: 483 DGMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLEL 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R L L K++G++ H A+ D+ + + + Sbjct: 543 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 594 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + + + + KR +P I L ++ ++ L K Sbjct: 595 NMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 635 >gi|157866092|ref|XP_001681752.1| mitochondrial DNA polymerase I protein B [Leishmania major strain Friedlin] gi|68125051|emb|CAJ02395.1| putative mitochondrial DNA polymerase I protein B [Leishmania major strain Friedlin] Length = 1429 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 6/159 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FDIETTGL+ D I+E+ + D + N TF + P R +P + +H IT+ Sbjct: 763 RVVFFDIETTGLNPSTDAIVEVA---MFDPIE-NSTFHTLVNPQ-RPITPRTVGIHHITN 817 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++D P+ + + + + + N Sbjct: 818 AMVRDAPTVDVVAKSIGQYLRL-DKASYNPHEILVLVGHNVFSVDEPMLRRALECHAPEC 876 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + S LN+ + + + L+D+ Sbjct: 877 QLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALA 915 >gi|86134050|ref|ZP_01052632.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] gi|85820913|gb|EAQ42060.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] Length = 275 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 71/199 (35%), Gaps = 8/199 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG++ DRI+EI +++ + +K ++T+ + P + A +HGIT+E Sbjct: 10 VFFDLETTGVNIATDRIVEISILKVFPNGNKESKTW--LVNPE-IEIPQGATDVHGITNE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P+F + + + + N + + + +D Sbjct: 67 KVVTEPTFKELAGKVSEMIAGCDLAGFNSNRFDI----PLLAEELMRAGIDFDMQNRKAI 122 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + S ++ HGA D++ ++ + + I Sbjct: 123 DVQVIFHKKEQRTLSAGYQFYCGKELEGAHGAEADTNATYEILLAQVEKYDDIGNSVDAL 182 Query: 189 EDRFFKEEKKTVPNISLLK 207 + ++ L Sbjct: 183 SEFSTHGKRADFAGFILFN 201 >gi|323489901|ref|ZP_08095123.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2] gi|323396408|gb|EGA89232.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2] Length = 202 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 9/164 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D ETTGL ND+II+IGAV+ +++ + T + + P R S ++ GIT+ Sbjct: 41 NYVVLDFETTGLRPGNDKIIQIGAVKYVNHER-EETMYLMVNPQ-RSISNTITRITGITN 98 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +++ P I + F + IAHNA FD+GF+ A + Sbjct: 99 KDVENAPVIEDIAHDLITFIGD--LPIIAHNAPFDMGFLYALEDITPIPEYTVIDTVKLA 156 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 A + P+ + + H AL D + +Y Sbjct: 157 RKAITQTPNHKLTTLTA-----FLKLEHDAHDALGDCLATAAIY 195 >gi|237755791|ref|ZP_04584393.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium yellowstonense SS-5] gi|237692054|gb|EEP61060.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium yellowstonense SS-5] Length = 203 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + FD ETTGL+ K D I+ I AV++ + N F V + P+ Sbjct: 34 YVAFDTETTGLNPKVDDILSIAAVKIKDNKILLNERFNVIVRPDREIIEDAIKIHGLRKK 93 Query: 68 EFLKDKP 74 + P Sbjct: 94 DLESGIP 100 >gi|89098849|ref|ZP_01171730.1| hypothetical protein B14911_05299 [Bacillus sp. NRRL B-14911] gi|89086525|gb|EAR65645.1| hypothetical protein B14911_05299 [Bacillus sp. NRRL B-14911] Length = 243 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 6/170 (3%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63 +M IV DIETTG + D II IGAV++ + + ++ F + + SP+ +L Sbjct: 56 RMEAIVMDIETTGFFPDQGDEIISIGAVKIENGTINEDKKFYSLIRYE-KTLSPQIEQLT 114 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 G+ LK+ P + EF+ F + AH+A+ + F+ + K PL I Sbjct: 115 GLRGSQLKEAPPLPEVLIEFFKFCEARTII--AHHARHEKSFLQNASWKHFKAPLKHRII 172 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL-LSDVYI 172 + + + L LC GI + R L YI Sbjct: 173 DTSFLYRIAEPELNLQRLEDLCSHNGIPVMERHHALEDARLAAELWCCYI 222 >gi|188997445|ref|YP_001931696.1| Exonuclease RNase T and DNA polymerase III [Sulfurihydrogenibium sp. YO3AOP1] gi|188932512|gb|ACD67142.1| Exonuclease RNase T and DNA polymerase III [Sulfurihydrogenibium sp. YO3AOP1] Length = 203 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + FD ETTGL+ K D I+ I AV++ + N F V + P+ N Sbjct: 34 YVAFDTETTGLNPKVDDILSIAAVKIKDNKILLNERFNVIVKPDREINEDVIKIHGLRKK 93 Query: 68 EFLKDKP 74 + P Sbjct: 94 DLESGIP 100 >gi|56963998|ref|YP_175729.1| DNA polymerase III PolC [Bacillus clausii KSM-K16] gi|56910241|dbj|BAD64768.1| DNA polymerase III alpha subunit PolC [Bacillus clausii KSM-K16] Length = 1430 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 6/189 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + IIE+ AV++ + T++ F P S ++L GITD+ Sbjct: 416 YVVFDVETTGLSAVYNTIIELAAVKIKNGEII-DTYESFADPK-EPLSATIIELTGITDD 473 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + + +F + NA +AHNA FD+GF+N +++ + I Sbjct: 474 MVQGAPEPAEVLKQFRE--FAGNATLVAHNASFDIGFLNVGYKKLGFSEVTNPVIDTLEL 531 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+LCK++ I S H A+ D+ + + KM+ ++ + Sbjct: 532 GRFLYPELKNHRLNTLCKKF--DIELVSHHRAIYDTQATAYLLWKMVKDAAEKEIVYHDE 589 Query: 189 EDRFFKEEK 197 + + Sbjct: 590 LNNHMGQGN 598 >gi|124265242|ref|YP_001019246.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] gi|124258017|gb|ABM93011.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] Length = 208 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 69/170 (40%), Gaps = 6/170 (3%) Query: 7 MRKI-VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M I V D ETTG+ + R EI AV + R +Q + +G P +L G Sbjct: 1 METIAVIDFETTGISPGQGARATEIAAVLVRGGQIVGR-YQSLMN-SGAWVPPFIEQLTG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I++ L+ P + E D +AHNA FD GF AE R D Sbjct: 59 ISNRMLERAPPAERVMREVLD--FTAGCPLVAHNAAFDRGFWQAERARAGCDEDAAHAFA 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 TL +ARR +P + N + H AL D+ + + ++M Sbjct: 117 CTLLLARRLYPEAPNHRLGTLAKLHALPDGGRAHRALADAETAAHLLLRM 166 >gi|15835437|ref|NP_297196.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg] gi|270285617|ref|ZP_06195011.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg] gi|270289627|ref|ZP_06195929.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss] gi|301337013|ref|ZP_07225215.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14] gi|8163328|gb|AAF73606.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum Nigg] Length = 250 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 4/182 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ + + D ETTGLD K DR+IE A+ + + + P R S E+ Sbjct: 1 MVLLKDIEFVCLDCETTGLDVKKDRVIEFAAIRFTFDEVIDSV-EFLIHPE-RAVSAESQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K+H I+D LKDKP FS +FS FF E++ H + Sbjct: 59 KIHKISDAMLKDKPKFSEVFSTIKGFFKERDYIVGHHVGFDLQVLSQESERLGETLLPKQ 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL +A+ S N L +L + + + H A+ D + V+ + Sbjct: 119 HYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGN--HRAMKDVEMNVKVFKHLTKRFRT 176 Query: 181 IN 182 ++ Sbjct: 177 LS 178 >gi|225376763|ref|ZP_03753984.1| hypothetical protein ROSEINA2194_02405 [Roseburia inulinivorans DSM 16841] gi|225211389|gb|EEG93743.1| hypothetical protein ROSEINA2194_02405 [Roseburia inulinivorans DSM 16841] Length = 241 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 7/171 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+E TGL++K DRI+E GA + T TF + P RK + + L GIT+E Sbjct: 5 YVVIDLEMTGLNAKTDRILEAGAARVRGNVVTA-TFSEIINPK-RKLPEKVVSLTGITNE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + F+DF E + N FD F+ + + L+ Sbjct: 63 MAAQGKETDATLAAFFDFIGE--DILVGQNVIFDYSFLKQWAVNHKRTFERNAVDTLKLA 120 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + DL SLC +GI H H AL D ++ +M Sbjct: 121 RKFLPQ-EQKKDLASLCSYFGIERVHA--HRALDDVMETQQIFEQMQKMYE 168 >gi|255534839|ref|YP_003095210.1| DNA Pol III Epsilon Chain [Flavobacteriaceae bacterium 3519-10] gi|255341035|gb|ACU07148.1| DNA Pol III Epsilon Chain [Flavobacteriaceae bacterium 3519-10] Length = 254 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 72/181 (39%), Gaps = 8/181 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +FD+ETTG++ DRI+EI +++ D S+ ++T+ + P E+ ++HGI+D+ Sbjct: 11 IFDLETTGVNVAKDRIVEISILKVNPDGSRESKTW--LVNPE-MYIPKESTEIHGISDDD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ P F I + + + N L+ L +++D +I Sbjct: 68 VKNSPKFKEIAPKVMEMITGTDLGGFNSNRFDVPLLAEELLRAGIDFDLTKFKLVDVQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + P S + + H A D +V + +++ Sbjct: 128 YHKMEP----RNLSAAYNFYCKKELVNAHSAEADVLATFEVLDAQVAHYNELPNDIAGLS 183 Query: 190 D 190 + Sbjct: 184 E 184 >gi|322497434|emb|CBZ32508.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1430 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 6/159 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FDIETTGL+ D I+E+ + D + N TF + P R +P + +H IT+ Sbjct: 764 RIVFFDIETTGLNPSTDAIVEVA---MFDPIE-NSTFHTLVNPQ-RSITPRTVGIHHITN 818 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++D P+ + + + + + N Sbjct: 819 AMVRDAPTVDVVAKSIGQYLRL-DKASYNPHEILVLVGHNVFSVDEPMLRRALECHAPEC 877 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + S LN+ + + + L+D+ Sbjct: 878 QLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALA 916 >gi|146080581|ref|XP_001464035.1| mitochondrial DNA polymerase I protein B [Leishmania infantum JPCM5] gi|134068125|emb|CAM66410.1| putative mitochondrial DNA polymerase I protein B [Leishmania infantum JPCM5] Length = 1430 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 6/159 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FDIETTGL+ D I+E+ + D + N TF + P R +P + +H IT+ Sbjct: 764 RIVFFDIETTGLNPSTDAIVEVA---MFDPIE-NSTFHTLVNPQ-RSITPRTVGIHHITN 818 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++D P+ + + + + + N Sbjct: 819 AMVRDAPTVDVVAKSIGQYLRL-DKASYNPHEILVLVGHNVFSVDEPMLRRALECHAPEC 877 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + S LN+ + + + L+D+ Sbjct: 878 QLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALA 916 >gi|111018828|ref|YP_701800.1| DNA polymerase III [Rhodococcus jostii RHA1] gi|110818358|gb|ABG93642.1| probable DNA polymerase III [Rhodococcus jostii RHA1] Length = 649 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 76/178 (42%), Gaps = 7/178 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+ET+GL S R++ + A+ L + R L P P + +H +T Sbjct: 70 RWVVVDVETSGLRSSTHRVLSVAALALREDGSVERELVTLLNPG---CDPGPVHIHNLTP 126 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P F + ++ + + +AHNA FD GF++AE++R R+ Sbjct: 127 QRLAGAPRFEEVANDLLELLDG--RTLVAHNASFDYGFLDAEVRRAGMTMPTRQRLCTLA 184 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 R + + L++L + + + H A D+ +L++V+ + Sbjct: 185 LSRRLEIDVPNHKLSTLAAHWKVRQNRA--HDAYDDALVLTEVFAHSASLAESLRLPL 240 >gi|298252829|ref|ZP_06976623.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella vaginalis 5-1] gi|297533193|gb|EFH72077.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella vaginalis 5-1] Length = 337 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 +V D ETTGL+SK D+IIEIGAV+ +D FQ + Sbjct: 155 NFVVIDCETTGLNSKVDKIIEIGAVKFIDGKI--EEFQKLIN 194 >gi|307297299|ref|ZP_07577105.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916559|gb|EFN46941.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 185 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 71/180 (39%), Gaps = 10/180 (5%) Query: 7 MRKI--VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKL 62 M+KI V D ETTG + DRI+EI A+ + + +FQ + P + + Sbjct: 1 MKKIYLVIDTETTGSSPLEGDRILEIAAIPVYGNKILHNLSFQSLVNP-LVMIPAQITGI 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HG+ +E + D+P+ + +F F ++ HN D+ F + + PL + Sbjct: 60 HGLKNEDVLDEPTMAEVFPRFRNYVGGATIV--GHNIVNDMTFFDIASKETGILPLANNY 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I + + I H A+ D+ + + V++ + I+ Sbjct: 118 IDTIDIAHEVFSEGPYGLKSIAKRLR---IRDVPTHRAMDDARVTAKVFLALARRLGGIS 174 >gi|182417780|ref|ZP_02949096.1| putative exonuclease [Clostridium butyricum 5521] gi|237667945|ref|ZP_04527929.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378504|gb|EDT76035.1| putative exonuclease [Clostridium butyricum 5521] gi|237656293|gb|EEP53849.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum E4 str. BoNT E BL5262] Length = 975 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 47/252 (18%), Positives = 85/252 (33%), Gaps = 32/252 (12%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 I DIETTGLD + IIEIGA++ D + T TF+ + P GR G++ Sbjct: 11 NVIYLDIETTGLDETSSEIIEIGAIKFKDNTIT--TFETLIRPRGRVPIGIYNLCTGLSK 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L PS ++ F + N + P + I+D++ Sbjct: 69 EELYSAPSLGNVRESLSQFLEDLPLICHNGNFEK--------KFFRYHLPQIKNTIMDSM 120 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A P + + + ++ H L DS V ++ + K Sbjct: 121 ELAAILEPYHKEYNLNALMKTVTDMNKNEIHRGLDDSINTLKVVNSLLCRLWS-SEEKKG 179 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRI----------TKEELDEHDKTIQT------- 230 + ++ K P + ++ L + ++ E+ ++ Sbjct: 180 KKRTLYENINKYYPYLKNWSWNRHLLKPPFFIYDDYDYVSYKDKKENKAFLENVKIDYGK 239 Query: 231 ----LGKNAIWD 238 L IW+ Sbjct: 240 YEELLKDEKIWN 251 >gi|332291593|ref|YP_004430202.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332169679|gb|AEE18934.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 232 Score = 66.1 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALK 61 + + R +VFD ETTGL K DRI+ IGAV +++ ++ +++L + K + Sbjct: 41 KLHTTRFVVFDTETTGLHYKEDRILSIGAVTVINNEISIAQSLELYLKQDIYKPESAKIH 100 >gi|327313528|ref|YP_004328965.1| exonuclease [Prevotella denticola F0289] gi|326944167|gb|AEA20052.1| exonuclease [Prevotella denticola F0289] Length = 284 Score = 66.1 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 6/198 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGLD NDRII+I +++L K R +F+ P + E +L GI+ + Sbjct: 10 VVFDLETTGLDLVNDRIIQISFIKVLPDGKEERE-NIFINPE-KPIPTEVTQLTGISHKD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+F E D F + N L+ SR+ID +I Sbjct: 68 VADAPTFRQKAKELADRFAGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFSKSRLIDAQNI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + ++ A + + + + Sbjct: 128 YHK----MERRNLAAAYKFYCGRKMEEDFEAHKADQDTEATWRVLQGELDMYSPDRQEEA 183 Query: 190 DRFFKEEKKTVPNISLLK 207 DR + + S + Sbjct: 184 DRVLANDMDELAEFSRMN 201 >gi|282861901|ref|ZP_06270964.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE] gi|282562926|gb|EFB68465.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE] Length = 333 Score = 66.1 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 8/163 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ L + + P P + +HG+T E Sbjct: 19 YAVVDVETTGL-ARDDRIVSAAVYRLDALGDVEDHWYTLVNPER---DPGPVWIHGLTSE 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + ++ + + +AHNA FD + E R R+ Sbjct: 75 ALEGAPLFPEVAAQLSERLDG--RVLVAHNAAFDWSMLAREYARAAITAPVRQRLCTIAL 132 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + P + L SL +G+ H AL D+ +L++ + Sbjct: 133 SKELRLPLPNHKLESLAAHFGVVQQRA--HHALDDARVLAEAF 173 >gi|330833568|ref|YP_004402393.1| DNA polymerase III PolC [Streptococcus suis ST3] gi|329307791|gb|AEB82207.1| DNA polymerase III PolC [Streptococcus suis ST3] Length = 1463 Score = 66.1 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 7/206 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S L GITDE Sbjct: 425 YVVFDVETTGLSAVNNALIQIAASKMHKGNIIAE-FDEFIDP-GHPLSQFTTDLTGITDE 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + EF DF + + +AHNA FDVGF+N +R + I Sbjct: 483 HVRGSKPLEQVLREFQDFCQD--SVMVAHNATFDVGFMNVNYERAGLPIISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R+ L L KR+G+ + H H A D+ + + + Sbjct: 541 ARNLYPDFKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLLFIFLKDALE-KHNLTNL 597 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 + + + +K Sbjct: 598 NQLNTELIAEDSYKKARVKHATLYVI 623 >gi|313682951|ref|YP_004060689.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense DSM 16994] gi|313155811|gb|ADR34489.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense DSM 16994] Length = 204 Score = 66.1 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 3/167 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL++K D ++ IGAV++ D T+ +F++FL P R+ S E++K+H I Sbjct: 32 VVFDTETTGLNTKKDEVLSIGAVKIKGDKILTSESFELFLKP-SREISVESIKIHHIRPC 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIIDTL 127 L++ +F +F + + + +N Sbjct: 91 DLENAIEPVEGAKKFLEFVGNRPLIGYYLEFDMAMMNRLIKPWIGVNLPNRQIEVSGLYF 150 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P DL + I +H AL D+ + + VYIK+ Sbjct: 151 DKKIELIPQGNIDLRFDTILRDLNIPRMGQHNALNDAIMTAMVYIKL 197 >gi|260578114|ref|ZP_05846035.1| exonuclease [Corynebacterium jeikeium ATCC 43734] gi|258603753|gb|EEW17009.1| exonuclease [Corynebacterium jeikeium ATCC 43734] Length = 198 Score = 66.1 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D+ETTGL + +RIIEI A+ + + + L PN E L GI+D Sbjct: 13 IVIDLETTGLRPQEERIIEIAALHIRNGEL-QDKYTTLLNPNL-SVPQEITDLTGISDGL 70 Query: 70 LKDKPSFSSIFSEFWDFFNE 89 L DKP+FS + E +F + Sbjct: 71 LADKPTFSEVMPELLNFLRD 90 >gi|68535798|ref|YP_250503.1| putative exonuclease [Corynebacterium jeikeium K411] gi|68263397|emb|CAI36885.1| putative exonuclease [Corynebacterium jeikeium K411] Length = 198 Score = 66.1 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D+ETTGL + +RIIEI A+ + + + L PN E L GI+D Sbjct: 13 IVIDLETTGLRPQEERIIEIAALHIRNGEL-QDKYTTLLNPNL-SVPQEITDLTGISDGL 70 Query: 70 LKDKPSFSSIFSEFWDFFNE 89 L DKP+FS + E +F + Sbjct: 71 LADKPTFSEVMPELLNFLRD 90 >gi|89898431|ref|YP_515541.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56] gi|89331803|dbj|BAE81396.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56] Length = 228 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 7/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG DRIIEI A + T +F ++ P EA K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRIIEIAA--FNN--VTKESFVTYVNPK-IPIPEEASKIHGITTST 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P F + +F DF + +N FD + E +R + +PL I Sbjct: 60 VASAPDFPEAYKQFRDFCGNEAVLVAHNNDGFDFPLLEKECRRHSLEPLTLRTIDSLKWA 119 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + +++L L + YG H AL D L DV+ ++ Sbjct: 120 QKYRPDLPKHNLQYLRQVYGFA--ENQAHRALDDVITLHDVFSALIGD 165 >gi|304383117|ref|ZP_07365592.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii DSM 16973] gi|304335803|gb|EFM02058.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii DSM 16973] Length = 889 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 2/117 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGLD D I+++ A+++ + +F VF+ R+ + E Sbjct: 504 VVFDTETTGLDVFADDIVQLAAIKVRNGKVVEGSSFNVFIRTE-REIPAMLGDIPNPIIE 562 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +K S + + + HN ++D + L R ++ + ++ Sbjct: 563 EMKHHECLSPEEAFAQFMDYVADDAVLGHNVEYDFHILLYNLLRHAPQWVERWKAVE 619 >gi|271970236|ref|YP_003344432.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270513411|gb|ACZ91689.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 189 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 13/180 (7%) Query: 12 FDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG K DRI EI V L T + + P + A+ +HGIT+ + Sbjct: 2 VDVETTGFSPAKGDRICEIALVSLDADGTTVDEWHSLVDP---RRGTGAVHVHGITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P + E W +AHN FD+ F+ ++ + Sbjct: 59 EGAPVIEEVLDEVWQRIAG--RVLVAHNVSFDLRFLKVLPGSHWLTEALCTQQLAPDL-- 114 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 P + L + C+R GI S+ A + ++++ + G + + Sbjct: 115 ---IPGGKWTLGACCQRAGIPFSNAHAALADARAT--AELFRFYLGRGLSWHDSLDRAAE 169 >gi|283783236|ref|YP_003373990.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis 409-05] gi|283441075|gb|ADB13541.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis 409-05] Length = 359 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 +V D ETTGL+SK D+IIEIGAV+ +D FQ + Sbjct: 177 NFVVIDCETTGLNSKVDKIIEIGAVKFIDGKI--EEFQKLIN 216 >gi|226360268|ref|YP_002778046.1| hypothetical protein ROP_08540 [Rhodococcus opacus B4] gi|226238753|dbj|BAH49101.1| putative DNA polymerase III epsilon subunit [Rhodococcus opacus B4] Length = 588 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 63/167 (37%), Gaps = 4/167 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG D I EIGAV++ + P GR P +++ GIT Sbjct: 24 FVVVDLETTGARPGEDAITEIGAVKIRGGEVIAEM-ATLVDP-GRSIPPHIVEITGITTA 81 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P + F + + A +AHNA FD GF+ A + + + Sbjct: 82 MVIDAPRIERVLPAFLE--FARGAVLVAHNAPFDTGFLKAAAAATDTPWPKFTVLCTVKL 139 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + + + H AL D+ DV ++ Sbjct: 140 ARRVLTRDEAPSVKLSSLARLLDVGTTPTHRALDDARATVDVLHALI 186 >gi|146319608|ref|YP_001199320.1| DNA polymerase III PolC [Streptococcus suis 05ZYH33] gi|146321806|ref|YP_001201517.1| DNA polymerase III PolC [Streptococcus suis 98HAH33] gi|253752606|ref|YP_003025747.1| DNA polymerase III PolC-type [Streptococcus suis SC84] gi|253754432|ref|YP_003027573.1| DNA polymerase III PolC-type [Streptococcus suis P1/7] gi|253756365|ref|YP_003029505.1| DNA polymerase III PolC-type [Streptococcus suis BM407] gi|166217454|sp|A4W428|DPO3_STRS2 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|166217456|sp|A4VXT1|DPO3_STRSY RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|145690414|gb|ABP90920.1| DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus suis 05ZYH33] gi|145692612|gb|ABP93117.1| DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus suis 98HAH33] gi|251816895|emb|CAZ52544.1| DNA polymerase III PolC-type [Streptococcus suis SC84] gi|251818829|emb|CAZ56672.1| DNA polymerase III PolC-type [Streptococcus suis BM407] gi|251820678|emb|CAR47440.1| DNA polymerase III PolC-type [Streptococcus suis P1/7] gi|292559223|gb|ADE32224.1| DNA polymerase III, alpha subunit [Streptococcus suis GZ1] gi|319759021|gb|ADV70963.1| DNA polymerase III PolC [Streptococcus suis JS14] Length = 1463 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 7/206 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S L GITDE Sbjct: 425 YVVFDVETTGLSAVNNALIQIAASKMHKGNIIAE-FDEFIDP-GHPLSQFTTDLTGITDE 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + EF DF + + +AHNA FDVGF+N +R + I Sbjct: 483 HVRGSKPLEQVLREFQDFCQD--SVMVAHNATFDVGFMNVNYERAGLPIISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R+ L L KR+G+ + H H A D+ + + + Sbjct: 541 ARNLYPDFKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLLFIFLKDALE-KHNLTNL 597 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 + + + +K Sbjct: 598 NQLNTELIAEDSYKKARVKHATLYVI 623 >gi|328950488|ref|YP_004367823.1| DNA polymerase III, epsilon subunit [Marinithermus hydrothermalis DSM 14884] gi|328450812|gb|AEB11713.1| DNA polymerase III, epsilon subunit [Marinithermus hydrothermalis DSM 14884] Length = 248 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + D IIE+ + + + + + P GR P +L GI Sbjct: 77 VVLDLETTGLSPERDEIIEVALIRVEGARRL--EYSRLVNP-GRPIPPRITRLTGIRSGD 133 Query: 70 LKDKP 74 ++D+P Sbjct: 134 VRDQP 138 >gi|328544128|ref|YP_004304237.1| DNA polymerase III, epsilon subunit [polymorphum gilvum SL003B-26A1] gi|326413871|gb|ADZ70934.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum SL003B-26A1] Length = 719 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 4/109 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGLD ++DRI++IGAV + F+V + P G A ++HG+ D Sbjct: 21 VVLDTETTGLDVRHDRIVQIGAVRMHGAEIDETAVFEVTVDP-GIPIPEVASRIHGLADA 79 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + KP +++ + F + A + H+ FD+ + E +R Sbjct: 80 DVAGKPGLAAVMPDLVAFIGD--AVVVGHSIHFDMAVLRHEAERHGFVW 126 >gi|302024523|ref|ZP_07249734.1| DNA polymerase III PolC [Streptococcus suis 05HAS68] Length = 1463 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 7/206 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S L GITDE Sbjct: 425 YVVFDVETTGLSAVNNALIQIAASKMHKGNIIAE-FDEFIDP-GHPLSQFTTDLTGITDE 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + EF DF + + +AHNA FDVGF+N +R + I Sbjct: 483 HVRGSKPLEQVLREFQDFCQD--SVMVAHNATFDVGFMNVNYERAGLPIISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R+ L L KR+G+ + H H A D+ + + + Sbjct: 541 ARNLYPDFKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLLFIFLKDALE-KHNLTNL 597 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 + + + +K Sbjct: 598 NQLNTELIAEDSYKKARVKHATLYVI 623 >gi|256851899|ref|ZP_05557287.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN] gi|260661840|ref|ZP_05862750.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN] gi|282931860|ref|ZP_06337341.1| DNA polymerase III [Lactobacillus jensenii 208-1] gi|256615857|gb|EEU21046.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN] gi|260547309|gb|EEX23289.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN] gi|281304023|gb|EFA96144.1| DNA polymerase III [Lactobacillus jensenii 208-1] Length = 317 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 72/219 (32%), Gaps = 12/219 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70 DIETTGL DRI E+ +++ + + + P K KL+GI + + Sbjct: 38 LDIETTGLSPYRDRITELAGIKVRNGKVVAE-YSQLVKYPKDNKVPRFITKLNGIDEALI 96 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + F + +N FD+ FI ++ L + I Sbjct: 97 LANGMPVKEAITEFRNFIG-GDVIVGYNVNFDLNFIYDLCEKFQLKKLSNNYIDVLHFSR 155 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 S N L +R GI+ H L DS V+ + + Sbjct: 156 VFFKKESHNRLLDCIRRLGIS--ESEAHRGLKDSLDTKAVFDIY-RKQFTPEMLNEVKDS 212 Query: 191 RFFKEEKKTVPNISLLKRDKPLFT------RITKEELDE 223 + +P L+KR+ + KEEL+ Sbjct: 213 LKSCVLTEEIPFEYLIKRNPLKNKTVVFAGTVNKEELEL 251 >gi|119471121|ref|ZP_01613653.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7] gi|119445777|gb|EAW27059.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7] Length = 745 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 7/162 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG +R+ EIG V++ T+ + P R KL GI+D + Sbjct: 581 VVDIETTGGLKGGNRVTEIGIVKVQHGKVI-DTWTTLINPQ-RHIPSFITKLTGISDGMV 638 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F+ I D N + E+ ++++ Sbjct: 639 YNAPVFADIAQPLLDKLAGSIFVAHNVNFDYGFIKKECEVAGHFFKMPKMCTVVESRRAF 698 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + S +L++ ++ S H AL D+ +++ + Sbjct: 699 KGLKSYSLGNLSAH-----FNLNLTSHHRALADATATAELLL 735 >gi|212696923|ref|ZP_03305051.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM 7454] gi|212676213|gb|EEB35820.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM 7454] Length = 1010 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 7/182 (3%) Query: 15 ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP 74 ETTGL +D+I EIGAV++ + T F + P + + ++L GIT+E + DKP Sbjct: 2 ETTGLYKYSDKITEIGAVKVENGEIT-EVFNELVNPE-KMIPEKVVELTGITNEMVMDKP 59 Query: 75 SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH 134 I +F + ++A ++ N FD+GFI N +DTL +AR Sbjct: 60 KIDEILPKFLE--FSKDAYFVGQNTDFDIGFIK--EACDNLSYQFEPVYLDTLPMARAVF 115 Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFK 194 PS + + + + H A D+ + V+IK+ N + K Sbjct: 116 PSMGRFSLDKLAKK-LAVGPFNHHRASDDAMTTAKVFIKLFEKIKDKNKDLSLAKINSIK 174 Query: 195 EE 196 + Sbjct: 175 TK 176 >gi|291540867|emb|CBL13978.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis XB6B4] Length = 235 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 16/216 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+E TGL++K D I+E+GAV + ++ ++ F LC K + +L GIT+ Sbjct: 4 YVVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDK-FGAILC-QNVKIPEKVTELTGITEA 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +F++F E + N FD GF+ N + L+ Sbjct: 62 MVQGGMEKEEAMRQFFEFIGE--DIIVGQNVIFDYGFLKQWAVNHNMPLERNAVDTLKLA 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + DL SLC +G+ + H A D++ VY + + + G Sbjct: 120 RKFLPK-EQKKDLESLCACFGVK--RENAHRAFDDAYETWQVYEALRERYEEESAGDFMP 176 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224 + +K +K+T + +K + E H Sbjct: 177 KPLLYKAKKQTPATVRQIKYLR---------EYAAH 203 >gi|223933907|ref|ZP_03625870.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591] gi|223897433|gb|EEF63831.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591] Length = 1463 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 7/206 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S L GITDE Sbjct: 425 YVVFDVETTGLSAVNNALIQIAASKMHKGNIIAE-FDEFIDP-GHPLSQFTTDLTGITDE 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + EF DF + + +AHNA FDVGF+N +R + I Sbjct: 483 HVRGSKPLEQVLREFQDFCQD--SVMVAHNATFDVGFMNVNYERAGLPIISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R+ L L KR+G+ + H H A D+ + + + Sbjct: 541 ARNLYPDFKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLLFTFLKDALE-KHNLTNL 597 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 + + + +K Sbjct: 598 NQLNTELIAEDSYKKARVKHATLYVI 623 >gi|303236025|ref|ZP_07322628.1| exonuclease [Prevotella disiens FB035-09AN] gi|302483898|gb|EFL46890.1| exonuclease [Prevotella disiens FB035-09AN] Length = 284 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 68/198 (34%), Gaps = 6/198 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGLD DRII+I +++ R +++ P ++ E ++L GI+D Sbjct: 10 IVFDLETTGLDLVKDRIIQISYIKVSPNGDEERE-NLYINPE-KEIPKEVVELTGISDAD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P+F E D F + N L+ R+ID +I Sbjct: 68 VASAPTFKQKAKELADKFIGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFSKCRLIDAQNI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + + A + + + + Sbjct: 128 FHK----MERRNLAAAYEFYCGRKMEEDFTAHKADEDTEATWRVLQGQIEMYSAEKQDEP 183 Query: 190 DRFFKEEKKTVPNISLLK 207 +R K + + N S + Sbjct: 184 ERILKNDMDELANFSSMN 201 >gi|330816132|ref|YP_004359837.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3] gi|327368525|gb|AEA59881.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3] Length = 203 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 8/170 (4%) Query: 7 MRKI-VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+ + V D ETTGL + DR EI V L D +R +Q + GR+ + + L G Sbjct: 1 MQTVAVLDFETTGLSPAQGDRATEIAIVLLRDGEIVDR-YQSLMN-AGRRIPSDVVALTG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT++ + P +S+ E F N +AHNA FD F + Sbjct: 59 ITNDMIASAPPVASVMREAAAFV--GNHPVVAHNAGFDRRFWQ--SELGLLGVPSAHEFA 114 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 TL +ARR +P + + S H A++D+ + S ++ ++ Sbjct: 115 CTLLVARRIYPQAPSHRLSSLVEMLSLPKTGRAHRAMVDAEMASHLWCRL 164 >gi|282878677|ref|ZP_06287446.1| exonuclease [Prevotella buccalis ATCC 35310] gi|281299222|gb|EFA91622.1| exonuclease [Prevotella buccalis ATCC 35310] Length = 284 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 68/198 (34%), Gaps = 6/198 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGLD DRII+I +++ K R + + P + E L GIT+E Sbjct: 10 IVFDLETTGLDLVKDRIIQISYIKVFPDGKEERE-NILVNPE-KNIPLEVSALTGITNED 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P F I + + F + N L+ S ++D +I Sbjct: 68 VADAPKFQDIAQKLAEEFKGCDFAGYNSNHFDIPILAEEFLRAGIDFDFSKSNLVDAQAI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + ++ A Y +M + N Sbjct: 128 FHK----MERRNLAAAYKFYCGRKMEDDFEAHRADQDAEVTYRVLMGQLDKYNPETAEEA 183 Query: 190 DRFFKEEKKTVPNISLLK 207 DR + K + S + Sbjct: 184 DRALPNDMKYLAEFSKMN 201 >gi|238925353|ref|YP_002938870.1| DNA polymerase III, epsilon subunit [Eubacterium rectale ATCC 33656] gi|238877029|gb|ACR76736.1| DNA polymerase III, epsilon subunit [Eubacterium rectale ATCC 33656] Length = 245 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 7/177 (3%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N V D+E TGL +KND+IIEIGA + T + P + +L Sbjct: 5 DNIKNYTVIDLEMTGLSAKNDKIIEIGAARVRGGEIV-DTISTLVNPK-QHIPQRVQELT 62 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD +++ +F + + N FD F+ + + Sbjct: 63 GITDSDVENAADMDEAVDNLLNFIGD--DIILGQNVTFDYSFLKQWAVNHKRTLSLNAYD 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ L LC+ +G++ ++ H AL D+ ++ K++ + Sbjct: 121 TLKIARKCLPA-EQSKKLEDLCEYFGVS--RKNAHRALDDAIETKQIFEKLLALMDE 174 >gi|296166059|ref|ZP_06848506.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898580|gb|EFG78139.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 648 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 46/210 (21%), Positives = 77/210 (36%), Gaps = 10/210 (4%) Query: 9 KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +V D+ETTG +K D I EIGAV++ F + P R P+ ++L Sbjct: 43 FVVVDLETTGGRTKATGGNAPDAITEIGAVKVRGGVVLGE-FATLVDPE-RSIPPQIVRL 100 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT + D P ++ F + +A +AHNA FD+GF+ A R + P Sbjct: 101 TGITTAMVSDAPRIDAVLPMFLE--FAGDAVLVAHNAGFDIGFLRAAAARCDIAWPRPKV 158 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + R + ++ + H AL D+ +V ++ Sbjct: 159 LCTVRLARRVLSREEAPSVRLGALARLFAVAAQPTHRALDDARATVEVLHALIERVGNQG 218 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 + + + T +L P Sbjct: 219 VHTYADLRSYLPDVTPTQRRKRVLAEGLPR 248 >gi|297243541|ref|ZP_06927472.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella vaginalis AMD] gi|296888292|gb|EFH27033.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella vaginalis AMD] Length = 338 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 +V D ETTGL+SK D+IIEIGAV+ +D FQ + Sbjct: 156 NFVVIDCETTGLNSKVDKIIEIGAVKFIDGKI--EEFQKLIN 195 >gi|328479965|gb|EGF49008.1| DNA polymerase III PolC [Lactobacillus rhamnosus MTCC 5462] Length = 132 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 4/105 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P L ++ Sbjct: 13 YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDPG---FPLSELTINLTHIT 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 S S A + HN FDVGF++ +R Sbjct: 69 DDMVHGSKSEEEVFRLFQQFCDGAIMVGHNVTFDVGFLDNGYERH 113 >gi|260655785|ref|ZP_05861254.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1] gi|260629401|gb|EEX47595.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1] Length = 208 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 6/173 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTGL ++ IIE+GA++ + K F + P G +HGITD+ Sbjct: 12 YVALDIETTGLSPRSCSIIEVGALKFVPGKK-GEEFSSLIDP-GCPIPASGRSIHGITDD 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P + + DF A + HNA FD+ FI L ++ + + DTL Sbjct: 70 MVAGQPRVEEVIAGLLDFVGP--APLVLHNAPFDLSFIAPVLDKLGRKW-QAMTVFDTLP 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++R P R+ + H AL D ++ + + Q+ Sbjct: 127 LSRVAFPGLRSYSLESLSDF-FEFKEGVHHRALCDCWYTQQLFTRFLEKVDQL 178 >gi|313843978|ref|YP_004061641.1| hypothetical protein OlV1_008c [Ostreococcus lucimarinus virus OlV1] gi|312599363|gb|ADQ91385.1| hypothetical protein OlV1_008c [Ostreococcus lucimarinus virus OlV1] Length = 447 Score = 65.7 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 86/253 (33%), Gaps = 36/253 (14%) Query: 7 MRKIVFDIETTGL---------------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 M I FD ET+GL + R + + A + +TF + P+ Sbjct: 5 MNYIAFDFETSGLPRGRRNTKVTHETLSNFDGCRAVSLSAARFSQRGRLIKTFDAIIRPD 64 Query: 52 GRKNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 G + E++ +HGI++E + F ++ +F +F + +AHNA+FD + +E+ Sbjct: 65 GFQIGEESIAIHGISNEKALSEGRPFPEVYRDFMEFIGPRTKTLVAHNAQFDTSVLQSEM 124 Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 R ++ ++ + + + H +L DS V Sbjct: 125 LRHGIPLEQIDDLVIRCTLEMYRDRFMGPIKLTKLYADIFGEEFDNAHNSLADSIACGRV 184 Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 Y ++ + + + I+ K+ + L EE Sbjct: 185 YPYLLGQTERTLKPLPIKKVIIGASSVASAIGINQYKKPQELV-----EE---------- 229 Query: 231 LGKNAIWDRYISS 243 +W +Y Sbjct: 230 -----LWKKYSPQ 237 >gi|224373045|ref|YP_002607417.1| exonuclease [Nautilia profundicola AmH] gi|223588855|gb|ACM92591.1| exonuclease [Nautilia profundicola AmH] Length = 203 Score = 65.7 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP 50 +V D ETTGLD K D II IGAV + + +R F +F+ P Sbjct: 32 VVVDTETTGLDRKKDEIISIGAVIVKNNRVLLSRKFHIFVKP 73 >gi|291524324|emb|CBK89911.1| exonuclease, DNA polymerase III, epsilon subunit family [Eubacterium rectale DSM 17629] Length = 260 Score = 65.7 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 67/177 (37%), Gaps = 7/177 (3%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N V D+E TGL +KND+IIEIGA + T + P + +L Sbjct: 20 DNIKNYTVIDLEMTGLSAKNDKIIEIGAARVRGGEIV-DTISTLVNPK-QHIPQRVQELT 77 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD +++ +F + + N FD F+ + + Sbjct: 78 GITDSDVENAADMDVAVDNLLNFIGD--DIILGQNVTFDYSFLKQWAVNHKRTLSLNAYD 135 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ L LC+ +G++ + H AL D+ ++ K++V + Sbjct: 136 TLKIARKCLPA-EQSKKLEDLCEYFGVS--RENAHRALDDAIETKQIFEKLLVLMDE 189 >gi|269836971|ref|YP_003319199.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM 20745] gi|269786234|gb|ACZ38377.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM 20745] Length = 658 Score = 65.7 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 2/88 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTGL RIIE+ A+ + F + P R KL GI + Sbjct: 88 FVVIDIETTGLRPLRQRIIEVAAIRYRGGRRQG-VFSTLVNPE-RPVPAYIRKLTGIDET 145 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIA 96 L P F + E F + Sbjct: 146 ALAGAPVFRRVADELTAFLGDDLLIGYN 173 >gi|260591581|ref|ZP_05857039.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319] gi|260536381|gb|EEX18998.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319] Length = 896 Score = 65.7 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 3/115 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGIT 66 +VFD ETTGLD D IIEI A+++ +++ P K + ++ I Sbjct: 515 VVFDTETTGLDVFADDIIEIAAMKIKGGEIVGEPLDLYIKTDKPILPKLGDKDNPMYAIY 574 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 E L + + + + HNA +D I+ LQR D L Sbjct: 575 HEKLSAEELITPQEALQRFLAYIGTRPILGHNASYDYNIIDNCLQRYCNDTLKAH 629 >gi|310641367|ref|YP_003946125.1| DNA polymerase iii, epsilon subunit [Paenibacillus polymyxa SC2] gi|309246317|gb|ADO55884.1| DNA polymerase III, epsilon subunit [Paenibacillus polymyxa SC2] Length = 245 Score = 65.3 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 4/171 (2%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTG ++ D I+ GA+ ++ + F + P + + +L GIT Sbjct: 61 VVFDLETTGFSAQHGDEILSFGAIRVVGDVIMEKEQFYTLVNP-RTEIPEQITRLTGITR 119 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRIIDT 126 E P + +F F + A + ++ ++ Sbjct: 120 EMTDGAPPLMNGLHDFMSFVGGRVLVAHASAHDKAFLNAALWKTSKVQLTHRVLDTMMLA 179 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + ++H + D + I H + A + + L +M+ Sbjct: 180 KWLEPQQHQTYSLDELLAYQSIPIEGRHHALEDAKMTAKLWVAYVQEMLKR 230 >gi|332667256|ref|YP_004450044.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM 1100] gi|332336070|gb|AEE53171.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis DSM 1100] Length = 282 Score = 65.3 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 68/179 (37%), Gaps = 11/179 (6%) Query: 7 MRKI------VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ I FDIE TGL+ DRI++I ++ + + + + P G S EA+ Sbjct: 1 MKLILDRDLCFFDIEATGLNVVRDRIVQIAIIKYFKDGREPQELSLMINP-GIPISLEAI 59 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGI + + +KP+F + + WDF + N + + + + Sbjct: 60 LVHGIQPKDVANKPTFQQLAQKIWDFIGNADLAGYNSNRFDIPMLMEEFARVGMEFDVTK 119 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 R ID I + P ++ H H A+ D DV+ + Sbjct: 120 RRSIDVQRIFYKMEP----RTLKAALKFYCEKEHEDAHDAMADVRATIDVFKGQLDKYE 174 >gi|325854302|ref|ZP_08171501.1| exonuclease [Prevotella denticola CRIS 18C-A] gi|325484096|gb|EGC87030.1| exonuclease [Prevotella denticola CRIS 18C-A] Length = 284 Score = 65.3 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 71/198 (35%), Gaps = 6/198 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGLD NDRII+I +++L K R +F+ P + E +L GI+D+ Sbjct: 10 VVFDLETTGLDLVNDRIIQISFIKVLPDGKEERE-NIFINPE-KPIPTEVTQLTGISDKD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+F E D F + N L+ SR+ID +I Sbjct: 68 VADAPTFRQKAKELADRFTGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFSKSRLIDAQNI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + ++ A + + + + Sbjct: 128 YHK----MERRNLAAAYKFYCGRKMEEDFEAHKADQDTEATWRVLQGELDMYSPDRQEEA 183 Query: 190 DRFFKEEKKTVPNISLLK 207 DR + + S + Sbjct: 184 DRVLANDMDELAEFSRMN 201 >gi|315924662|ref|ZP_07920879.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263] gi|315621561|gb|EFV01525.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263] Length = 178 Score = 65.3 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 9/171 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFD+ET + +N R+ IG + D T+ F + P +L GI + Sbjct: 3 RFVVFDVET--PNRENRRMSAIGITVIEDGKITDE-FYSLVNPET-YFDYFNTRLTGICE 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + P+F ++ + +AHNA FD+G + L+ + R + T+ Sbjct: 59 DAVWNAPTFPELWKTIAPMLSS--GLLVAHNAVFDMGVLKRCLRDYRIEWKPHVRYLCTV 116 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + RR P + LN LC YG + + H A DS + + ++ + G Sbjct: 117 QMGRRIIPGMSHKLNVLCDYYG---INLAHHQAASDSRACAQILLRYLEVG 164 >gi|229822935|ref|ZP_04449005.1| hypothetical protein GCWU000282_00227 [Catonella morbi ATCC 51271] gi|229787748|gb|EEP23862.1| hypothetical protein GCWU000282_00227 [Catonella morbi ATCC 51271] Length = 828 Score = 65.3 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%) Query: 2 IRKNKMRKIVFDIETTG--LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 ++ +R V D+ETTG LD + D+II+IGAV + D + + L P R Sbjct: 1 MKAKGIRIAVVDLETTGSHLD-QGDQIIQIGAVLIEDGQVLAQH-SMLLNPE-RNIPTHI 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103 + GI + ++D P+FS + +++ + Sbjct: 58 TAITGIQSDQVQDAPTFSQVAGLWYERLKDCFFVAHNLGFDLTF 101 >gi|295133095|ref|YP_003583771.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87] gi|294981110|gb|ADF51575.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87] Length = 257 Score = 65.3 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 19/222 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG + DRI+EI +++ + +K +RT+ + P + E + +HGI++E Sbjct: 11 FFDLETTGTNLAKDRIVEIAILKVYPNGNKESRTW--LVNPE-MEIPKEVIAIHGISNEK 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P+F + + +D + N L+ + +D +I Sbjct: 68 VANEPTFKELSKQIYDMIKGCDLGGYNSNRFDIPLLAEELLRADIDFDMKNMMAVDVQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK--- 186 + + ++ H A D+ +V + + K Sbjct: 128 FHK----KEQRTLAAAFKFYCGKELIDAHSAAADTEATYEVLKSQLDKYDDLENDIKWLS 183 Query: 187 --------TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + F KK S K L + ++E Sbjct: 184 QYSARKSFADFAGFISFNKKGEEIFSFGKYRGKLVEEVLEKE 225 >gi|254386412|ref|ZP_05001717.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] gi|194345262|gb|EDX26228.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] Length = 334 Score = 65.3 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 8/163 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL ++ DRI+ L + + P P + +HG+T + Sbjct: 31 YAVVDVETTGL-AREDRIVSAAVYRLDAQGNVEDHWYTLVNPQR---DPGPVWIHGLTSD 86 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P F I EF + +AHNA FD I E R + R+ Sbjct: 87 MLQDAPLFKDIAGEFAGRLAD--RVLVAHNAIFDWQMIAREYARAEETAPVRQRLCTIAL 144 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P + L SL +G+ H AL D+ +L++ + Sbjct: 145 SKELNLPLPNHKLESLAAHFGVVQQRA--HHALDDARVLAEAF 185 >gi|332532199|ref|ZP_08408080.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332038297|gb|EGI74742.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 671 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 4/107 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG +RI EIG V++ T+ + P R L GI+D + Sbjct: 569 VVDIETTGGLKGGNRITEIGIVKVRHGKVI-DTWTSLVNPE-RHIPGFITSLTGISDSMV 626 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + P F+ I D + ++AHN FD GFI E + Sbjct: 627 YNAPVFADIVKPLLDKLAG--SIFVAHNVNFDYGFIKKECEVAGHFF 671 >gi|294853583|ref|ZP_06794255.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026] gi|294819238|gb|EFG36238.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026] Length = 191 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 3/132 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 33 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDP-RKDSSPQAEA 90 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + + E +AHNA+FD+ +I E ++ D LD Sbjct: 91 VHGFDNWMTRYQDLFHELAAPIRKW-FSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQP 149 Query: 122 RIIDTLSIARRK 133 R Sbjct: 150 VYCTMDGARRLW 161 >gi|291535622|emb|CBL08734.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis M50/1] Length = 235 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 87/216 (40%), Gaps = 16/216 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+E TGL++K D I+E+GAV + ++ ++ F LC K + +L GIT+ Sbjct: 4 YVVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDK-FGAILC-QNVKIPEKVTELTGITEA 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +F++F E + N FD GF+ N + L+ Sbjct: 62 MVQGGMEKEEAMRQFFEFIGE--DIIVGQNVIFDYGFLKQWAVNHNMPLERNAVDTLKLA 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + DL SLC +G+ + H A D++ VY + + + G Sbjct: 120 RKFLPK-EQKKDLESLCACFGVK--RENAHRAFDDAYETWQVYEALRERYEEESAGDFMP 176 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224 + +K +K+T +K + E H Sbjct: 177 KPLLYKAKKQTPATARQIKYLR---------EYAAH 203 >gi|146300234|ref|YP_001194825.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] gi|146154652|gb|ABQ05506.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] Length = 209 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG D +NDRI+ IGA+ L + +F+++L + S + Sbjct: 24 RFVVLDTETTGFDYENDRILCIGALALQNGVISVQDSFEIYLHQDHYDKSTAQIH 78 >gi|88596045|ref|ZP_01099282.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25] gi|88190886|gb|EAQ94858.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25] gi|315058737|gb|ADT73066.1| Exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni S3] gi|315927070|gb|EFV06421.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 326 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 72/210 (34%), Gaps = 10/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG D K + I+EI A+ + K F + + GI ++ Sbjct: 34 YVVIDLETTGFDPKCNEILEIVALRYENNEKIAE-FSKLIK--VSFLPSFITEFTGINED 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ S EF DF +AHNA FD+ F+ P + Sbjct: 91 MIKNCNDISQTLKEFDDFLKS-GDILVAHNAHFDINFLYDNFMCYLNKPFSFDFVDTMRL 149 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + L LC +Y I + + H D L +++ + F Sbjct: 150 SKLINQELAHHRLKDLCNQYN--ICYENAHRGEKDCELTHLCLMEL----KKTAFDNSLI 203 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 E+ + K + +I + Sbjct: 204 ENDVLVNNGLKTQIRQTQTKAKDIQAKIQE 233 >gi|314055097|ref|YP_004063435.1| putative exonuclease RNase T and DNA polymerase III [Ostreococcus tauri virus 2] gi|313574988|emb|CBI70001.1| putative exonuclease RNase T and DNA polymerase III [Ostreococcus tauri virus 2] Length = 447 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 86/253 (33%), Gaps = 36/253 (14%) Query: 7 MRKIVFDIETTGL---------------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 M I FD ET+GL + R + + A + +TF + PN Sbjct: 5 MNYIAFDFETSGLPRGRRNTKVTHETLSNFDGCRAVSLSAARFSQRGRLIKTFDAIIRPN 64 Query: 52 GRKNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 G + E++ +HGI++E + F +F +F +F + +AHNA+FD + +E+ Sbjct: 65 GFQIGEESIAIHGISNEKALSEGRPFPDVFKDFMEFIGPRTKTLVAHNAQFDTSVLQSEM 124 Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 R ++ ++ + + + H +L DS V Sbjct: 125 LRHGIPLEQIDDLVIRCTLEMYRDRFMGPIKLTKLYADIFGEEFDNAHNSLADSIACGRV 184 Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 Y ++ + + + I+ K+ + L EE Sbjct: 185 YPYLLGQTERTLKPLPIKKVIIGASSVASAIGINQYKKPQELV-----EE---------- 229 Query: 231 LGKNAIWDRYISS 243 +W +Y Sbjct: 230 -----LWKKYSPQ 237 >gi|299538599|ref|ZP_07051882.1| ATP-dependent helicase dinG [Lysinibacillus fusiformis ZC1] gi|298726186|gb|EFI66778.1| ATP-dependent helicase dinG [Lysinibacillus fusiformis ZC1] Length = 923 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 75/187 (40%), Gaps = 10/187 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M+ K + D+ETTG DR+I+I V + D + RT+ F+ P G+ Sbjct: 1 MMESQK--YAIVDLETTGHSPANGDRMIQIAIVIMKD-WEIERTYTKFINP-GKAIPTFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L IT+E +KD F + ++ + ++AHNA FD+ F+ AE +R Sbjct: 57 QDLTHITNEDVKDAFPFEAHADYIYELLAD--CVFVAHNADFDLSFLQAEFKRAGLPKWQ 114 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKMMVG 177 ++ S L L I +HR+ A + L + +++ Sbjct: 115 GKKMDTVELAKILFPMSLGFKLGDLAADLNIELANAHRADDDARATAELFKHCWKELLSL 174 Query: 178 GSQINFG 184 Q+ Sbjct: 175 -PQLTLE 180 >gi|227894158|ref|ZP_04011963.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047] gi|227864030|gb|EEJ71451.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047] Length = 318 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 3/199 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 DIETTGL DRI E+GAV++ + ++ + + P + E Sbjct: 36 LDIETTGLSPYRDRITELGAVKVRNNQIVDQ-YTNLVKFPKNNKVPAFITKLNGITEEQI 94 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + + + I +N FD+ F+ Q+ N L+ + Sbjct: 95 VNEGIPAEQAIKEFREFIGDDPIIGYNVNFDLNFLYDLSQKYNLPVLNNDYVDVLRLARA 154 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191 N L +R GI +H L DS VY ++ + + Sbjct: 155 YYPRERHNRLIDCMQRAGIA--QVEQHHGLADSLDTIKVYNDFNKHFTEELLEAARSRIK 212 Query: 192 FFKEEKKTVPNISLLKRDK 210 F + L R+ Sbjct: 213 NFDLTGDELDYYQLGFRNP 231 >gi|154333792|ref|XP_001563151.1| mitochondrial DNA polymerase I protein B [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060163|emb|CAM45570.1| putative mitochondrial DNA polymerase I protein B [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1419 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 5/84 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FDIETTGL+ D I+E+ + D + N TF + P R SP + +H IT+ Sbjct: 764 RIVFFDIETTGLNPSTDAIVEVA---MFDPIE-NSTFHTLVNPQ-RPISPRTVGIHHITN 818 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQN 91 E ++D P+ + + Sbjct: 819 EMVRDAPTVDVVAKSIGQYLRLDM 842 >gi|302334813|ref|YP_003800020.1| DNA polymerase III, epsilon subunit [Olsenella uli DSM 7084] gi|301318653|gb|ADK67140.1| DNA polymerase III, epsilon subunit [Olsenella uli DSM 7084] Length = 1001 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 68/192 (35%), Gaps = 7/192 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL ++ +IEI A + R FQ F+ P G PE L I+D Sbjct: 57 FVVLDTETTGLSFRDCELIEIAAARIRGGVVEER-FQTFVHPMG-PIPPEISALTHISDL 114 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D PS + +F +AHNA FD F+ + + + + Sbjct: 115 DVTDAPSAVDAVAALSEFVAG--DPVLAHNATFDRTFVESVPGGRDVSDNWIDTLALSRI 172 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R S + L + + +G + + + + + ++ + Sbjct: 173 ALPR---LSSHRLADMARAFGCDSATHRATADVEALAGMWRIMLVALMDLPSGLLDLLST 229 Query: 189 EDRFFKEEKKTV 200 + + + Sbjct: 230 MHEEVDWQLRPI 241 >gi|229496202|ref|ZP_04389922.1| exonuclease [Porphyromonas endodontalis ATCC 35406] gi|229316780|gb|EEN82693.1| exonuclease [Porphyromonas endodontalis ATCC 35406] Length = 258 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 8/172 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FDIE+TGL + DRI+EI +++ D + RT L P E+ +HGITD+ Sbjct: 10 VFFDIESTGLSPEKDRIVEISLIKVYPDGHEEVRT--RRLNPECH-IPEESTAVHGITDD 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P+F + + N L+ + R ID + Sbjct: 67 DVRDCPTFRQVAKSLASMIQGCDIAGYNSNRFDVPLLGEEFLRADVEVDFSRCRFIDVQT 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I + ++ H A D+ +V + + Sbjct: 127 IFHK----MERRTLEAAYKFYCDKDLTEAHSAEADTRATLEVLKAQLDRYPE 174 >gi|78065586|ref|YP_368355.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383] gi|77966331|gb|ABB07711.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383] Length = 378 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 5/96 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG RI EIG VE+ + T+ + P G+ P +L GI+DE Sbjct: 17 VFVDLETTGGSPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDEM 73 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 ++D PSF+S+ ++ + ++AHNA FD GF Sbjct: 74 VRDAPSFASLAPALFERLDG--KLFVAHNASFDRGF 107 >gi|134295037|ref|YP_001118772.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4] gi|134138194|gb|ABO53937.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] Length = 375 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 5/96 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG RI EIG VE+ + T+ + P G+ P +L GI+D+ Sbjct: 16 VFVDLETTGGSPAEHRITEIGVVEIGPGHMS--TWTTLVNP-GQPIPPFIQQLTGISDDM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 ++D PSF+S+ ++ + ++AHNA FD GF Sbjct: 73 VRDAPSFASLAPALFERLDG--KLFVAHNASFDRGF 106 >gi|260912251|ref|ZP_05918803.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella sp. oral taxon 472 str. F0295] gi|260633685|gb|EEX51823.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella sp. oral taxon 472 str. F0295] Length = 284 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 4/182 (2%) Query: 2 IRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ N R IVFD+ETTGLD NDRII+I +++ K R +F+ P G+ E Sbjct: 1 MKLNLTRPLIVFDLETTGLDLVNDRIIQISYIKVYPDGKEERE-NLFVYP-GKPIPDEVS 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GIT + ++D P+F + + F + N L+ Sbjct: 59 ELTGITTDLVEDAPTFEELAPRLNEVFKGCDFAGFNSNHFDIPMLAEEFLRAEIDFDFSS 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ID +I + + + H A D+ V + + S+ Sbjct: 119 VRLIDAQTIFHKMEKRNLAAAYKFY-CGRKMEEDFAAHRADQDAEATYRVLLGELEKYSE 177 Query: 181 IN 182 N Sbjct: 178 AN 179 >gi|297620852|ref|YP_003708989.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU 86-1044] gi|297376153|gb|ADI37983.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU 86-1044] Length = 231 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 7/167 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I +D ETTG+ +++DRI+EI A + + + + P G EA K+H ITD Sbjct: 4 RPIFYDTETTGIKAEHDRIVEIAAY----DPISGCSLEELVNP-GIPIPKEASKVHHITD 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +KD P+F + +F +F + IAHN + + + R DTL Sbjct: 59 DMVKDAPTFKEVGQKFIEF-CSGDVILIAHNNDNFDVHFLRHEFKRHALEMPEWRFFDTL 117 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ARR P + +I + H AL D +L V+ KM Sbjct: 118 KWARRYRPDLPRHALQFLREI-YSIEANNAHRALDDVIVLHKVFEKM 163 >gi|262204572|ref|YP_003275780.1| exonuclease RNase T and DNA polymerase III [Gordonia bronchialis DSM 43247] gi|262087919|gb|ACY23887.1| Exonuclease RNase T and DNA polymerase III [Gordonia bronchialis DSM 43247] Length = 590 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 7/177 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG +++ DR++ + + L + + L P P + +H +T + Sbjct: 10 WVLVDVETTGTNARRDRVLSLATMTLDYDGRVEDEYATLLNPG---CDPGPVHIHNLTRD 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P+F S + AHNA FD GF+ E +R+ R+ Sbjct: 67 RLHGAPTFDVTMSPLQQMLAGRTMV--AHNATFDHGFLVEEARRLGATLPIDHRLCTVTL 124 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 R + L +L +GI H A D L++V+ + + + Sbjct: 125 ARRLQLDVPNVKLGTLATYWGIRQRAA--HDARDDVRTLAEVFRRSLDLAETLGLRL 179 >gi|330444392|ref|YP_004377378.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58] gi|328807502|gb|AEB41675.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58] Length = 232 Score = 65.3 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 8/172 (4%) Query: 7 MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M ++F D ETTG DR+IEI A S T +F ++ P ++ K+HGI Sbjct: 1 MSVLIFYDTETTGTQIDKDRVIEIAAY----NSSTKESFVTYVNPE-IPVPEDSSKIHGI 55 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + P+F + F F + +N FD+ + E QR + +PL+ I Sbjct: 56 TTAMVSSAPTFPEAYHNFKQFCGSASILVAHNNDNFDLPLLQKECQRYSLEPLNLRTIDS 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + +++L L + YG H AL D L V+ ++ Sbjct: 116 LKWAKKYRPDLPKHNLQYLRQVYGFA--ENQAHRALDDVITLHKVFSALVGD 165 >gi|153006866|ref|YP_001381191.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] gi|152030439|gb|ABS28207.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] Length = 238 Score = 65.3 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 55/182 (30%), Gaps = 4/182 (2%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLH 63 M V D E TGLD D I+ IGAV + + F P + E + +H Sbjct: 43 RTMTFTVLDCEMTGLDPARDEILSIGAVRIRNGRIVMAERFYQVFKPTEAVSPKEVILIH 102 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSR 122 G+ + + F + + A + + Sbjct: 103 GLGPDEVSRGLPLGDALERLLAFIGDSVVIGHFTSVDLSFLNAALASRKERSLKNPALDT 162 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + RR P+ + ++ + I + H A D+ V++K++ Sbjct: 163 RLLYAWWRRRTSPAGQAAADANLEDIVIEMGLPRYPAHHAFYDALTTGMVFLKLLGDFEA 222 Query: 181 IN 182 Sbjct: 223 SG 224 >gi|47458892|ref|YP_015754.1| DNA polymerase III PolC [Mycoplasma mobile 163K] gi|47458220|gb|AAT27543.1| DNA polymerase III alpha subunit [Mycoplasma mobile 163K] Length = 1433 Score = 65.3 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 4/163 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL D IIE GA ++L+ T Q F+ PN ++ S + + GI ++ Sbjct: 400 YVVFDLETTGLSPIFDDIIEFGAQKILNGKVI-DTLQFFVKPN-KEISEKITLITGIKNQ 457 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ S + +F + AHNA FD+ FIN ++++ N + I + Sbjct: 458 DVENAISEKEALKKILEFMGDHTVV--AHNATFDMNFINEKIEKYNFQESNLQIIDTLVV 515 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + + L +L R GI + H A D+ +L+ V+ Sbjct: 516 SKIIEPEAKKFSLENLASRSGIIYNSTEAHRADYDADVLAKVW 558 >gi|78066765|ref|YP_369534.1| DNA-directed DNA polymerase [Burkholderia sp. 383] gi|77967510|gb|ABB08890.1| DNA-directed DNA polymerase [Burkholderia sp. 383] Length = 205 Score = 65.3 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 8/170 (4%) Query: 7 MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+ + V D ETTGL DR EI + L D +R FQ + GR+ + + L G Sbjct: 1 MQTVAVLDFETTGLSPNMGDRATEIAVILLRDGQVVDR-FQSLMN-AGRRIPSDVVALTG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+E + P S++ E F + +AHNA FD F + Sbjct: 59 ITNEMIAAAPPASNVMKEAAAFVGK--HAVVAHNAGFDKRFWQ--SELGILGMSAEHAFA 114 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ +ARR +P +++ S H A++D+ + ++ ++ Sbjct: 115 CTMLVARRIYPDAQSHRLSSLVDMLRLPKSGRAHRAMVDAEMAGHLWCRL 164 >gi|257887081|ref|ZP_05666734.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733] gi|257895646|ref|ZP_05675299.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12] gi|293377743|ref|ZP_06623932.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium PC4.1] gi|257823135|gb|EEV50067.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733] gi|257832211|gb|EEV58632.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12] gi|292643743|gb|EFF61864.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium PC4.1] Length = 1450 Score = 65.3 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 16/225 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + +F F+ P + + Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N R I Sbjct: 481 DEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEATNPVIDTLEL 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R L L K++G++ H A+ D+ + + + Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 592 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + + + + KR +P I L ++ ++ L K Sbjct: 593 HMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 633 >gi|227551758|ref|ZP_03981807.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|227179063|gb|EEI60035.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] Length = 1450 Score = 65.3 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 16/225 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + +F F+ P + + Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N R I Sbjct: 481 DEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEATNPVIDTLEL 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R L L K++G++ H A+ D+ + + + Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 592 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + + + + KR +P I L ++ ++ L K Sbjct: 593 HMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 633 >gi|218680718|ref|ZP_03528615.1| dephospho-CoA kinase protein [Rhizobium etli CIAT 894] Length = 238 Score = 65.3 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 20/28 (71%), Positives = 25/28 (89%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVEL 34 MR+I+FD ETTGLD++ DRIIEIG +EL Sbjct: 203 MREIIFDTETTGLDNRADRIIEIGGIEL 230 >gi|229816213|ref|ZP_04446523.1| hypothetical protein COLINT_03263 [Collinsella intestinalis DSM 13280] gi|229808221|gb|EEP44013.1| hypothetical protein COLINT_03263 [Collinsella intestinalis DSM 13280] Length = 977 Score = 65.0 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 4/110 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D ETTGL ++ +IEI A L +R F F+ P+G E KL IT+ Sbjct: 48 IVLDTETTGLSHRDSELIEIAAARLRGREIVDR-FDTFVKPSG-LIPEEITKLTSITNVD 105 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + PS + +F +AHNA FD GFI + + Sbjct: 106 VAHAPSAVDAVASLAEFVGG--CPVVAHNAAFDRGFIEQVPGGADVSDIW 153 >gi|27383194|ref|NP_774723.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA 110] gi|27356368|dbj|BAC53348.1| bll8083 [Bradyrhizobium japonicum USDA 110] Length = 304 Score = 65.0 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 50/150 (33%), Gaps = 9/150 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL---LDYSK--TNRTFQVFLCPNGRKNSPEALKL 62 R + D+ETTGLD D I+EI V D + +F F P GR PE + Sbjct: 46 RAVFIDLETTGLDPVADEIVEIAMVPFDYSDDGRIFAVHESFARFRDP-GRPIPPEVSAM 104 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GITD + + F + A +AHN FD F P S Sbjct: 105 TGITDAMVAGAAIEPAE---IEAFLGDTAALVVAHNCSFDRRFAERFCPAFAHLPWACSW 161 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITI 152 + L + C + Sbjct: 162 AEIPWREEGFVDGTKLVHLAAACGFFHEGH 191 >gi|15606258|ref|NP_213636.1| DNA polymerase III epsilon subunit [Aquifex aeolicus VF5] gi|6014995|sp|O67074|DPO3E_AQUAE RecName: Full=DNA polymerase III subunit epsilon gi|2983450|gb|AAC07031.1| DNA polymerase III epsilon subunit [Aquifex aeolicus VF5] Length = 202 Score = 65.0 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 13/182 (7%) Query: 3 RKNKMR-------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 + KMR +V D+E TG D + +I++ AV + T + F + P G Sbjct: 6 KSLKMRDNLLDGTFVVIDLEATGFDVEKSEVIDLAAVRVEGGIITEK-FSTLVYP-GYFI 63 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 KL GIT+ L +P+ + EF +F + + H + D+ FIN ++ Sbjct: 64 PERIKKLTGITNAMLVGQPTIEEVLPEFLEFVGD--NIVVGHFVEQDIKFINKYTKQYRG 121 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L + + +G H AL D+ L ++++IK++ Sbjct: 122 KKFRNPSLCTLKLARKVFPGLKKYSLKEIAENFGFE--TNGVHRALKDATLTAEIFIKIL 179 Query: 176 VG 177 Sbjct: 180 EE 181 >gi|288932698|ref|YP_003436758.1| DNA polymerase III subunit epsilon [Ferroglobus placidus DSM 10642] gi|288894946|gb|ADC66483.1| DNA polymerase III, epsilon subunit [Ferroglobus placidus DSM 10642] Length = 200 Score = 65.0 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 84/196 (42%), Gaps = 9/196 (4%) Query: 7 MRK---IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62 MR+ V D+ETTGL+ K D II I + + + + L P R+ +++K Sbjct: 1 MREEKFAVVDVETTGLNVKKDEIISIAIIPMDGLKILFSEAYYRILKP--RRFKIDSVKY 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPS 121 HGIT +++ P+F + E + NE+ + N + E + + + Sbjct: 59 HGITPRMVEEAPTFCEVKEEILEKLNERIIVGYSINLDIEFLKKSFKECEVVFECKYVDI 118 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++ L L L K+YG+ +++R H AL D+++ + ++ ++ + Sbjct: 119 ADVEKLVGRLFGDYMKDVTLEDLAKKYGVDVAYR--HSALSDAYITAQIFQMQLLRLLKY 176 Query: 182 NFGFKTNEDRFFKEEK 197 + R K+E Sbjct: 177 GLRKFEDVLRAIKKED 192 >gi|227529135|ref|ZP_03959184.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus vaginalis ATCC 49540] gi|227350979|gb|EEJ41270.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus vaginalis ATCC 49540] Length = 960 Score = 65.0 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 7/172 (4%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG DRII++G V + D F+ + P +L GI + Sbjct: 27 VVDLETTGTSVNHGDRIIQVGCVLVQDGEII-NHFETKINP-RVAVPRHITQLTGIKNND 84 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ P F I + + ++AHN FD F+NAEL+R L I Sbjct: 85 VRNAPLFEDIAGTLYSLLSG--TIFVAHNVNFDFPFLNAELERAGYPSLSIKAIDTVTLS 142 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L L I H H A+ D+ + + + +M ++ Sbjct: 143 QILMPTVKSYRLRDLTSSLSIEHDHP--HSAVSDAEATAHLLVDLMKQLREL 192 >gi|116491013|ref|YP_810557.1| DNA polymerase III, alpha subunit ( type) [Oenococcus oeni PSU-1] gi|116091738|gb|ABJ56892.1| DNA polymerase III, alpha subunit (gram-positive type) [Oenococcus oeni PSU-1] Length = 1437 Score = 65.0 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 12/186 (6%) Query: 2 IRKNKMRKI-------VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 I N R+I +FDIETTGL + ND+II++ AV++ + TF F+ P G Sbjct: 396 IAINTNREILKDCQYTIFDIETTGLSAVNDKIIQLSAVKMKNGVVL-DTFDQFINP-GFP 453 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 S + + L GITD+ +K+ + + F HN ++ Sbjct: 454 LSEQTINLTGITDDLVKNSKPEAEVLKMFQQ--FYARTILAGHNVIKFDYGFVNHALAVH 511 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 K P + +IDTL++AR +P+ + +++ H A+ DS + Sbjct: 512 KLPKINTLVIDTLNLARWLYPNFGRYTLDFLSKK-FSVNLEHHHRAIDDSTATGMLLHIF 570 Query: 175 MVGGSQ 180 + + Sbjct: 571 LKEAEE 576 >gi|124485750|ref|YP_001030366.1| hypothetical protein Mlab_0928 [Methanocorpusculum labreanum Z] gi|124363291|gb|ABN07099.1| Exonuclease, RNase T and DNA polymerase III [Methanocorpusculum labreanum Z] Length = 228 Score = 65.0 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 66/174 (37%), Gaps = 4/174 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+ K DRI E+ A++ + + + + Sbjct: 3 IVDTETTGLNPKIDRITELAAIKFDKYGNKSVMDEYISLPNDICYPENVQEMTGITPEIL 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK P + + + HNA+FD+ FI L R + +IDTL+ Sbjct: 63 ELKGHPEEEIAWMFAMMLKSPGRVLLVTHNAQFDLRFIQEMLSRHRYVFPNGWGVIDTLT 122 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + R + P +++ Y ++ H A+ D L V+ M + ++ Sbjct: 123 VFRDRKPQPHRLSDAI--SYYGLDGVKNSHRAIDDVVALCAVFDAMCQEQNDLD 174 >gi|86131778|ref|ZP_01050375.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134] gi|85817600|gb|EAQ38774.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134] Length = 257 Score = 65.0 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 20/232 (8%) Query: 2 IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 ++ N R I FD+ETTG++ DRI+EI +++ D + F + P Sbjct: 1 MQLNITRPICFFDLETTGVNVAKDRIVEISILKVFPDGRE--EEFTERINP-TVPIPAVT 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGI+D + DKP+F+ E +D + + N ++ + + +D Sbjct: 58 TAVHGISDADVADKPTFAERAKEIYDIIKDSDLAGFNSNRFDI----PLLVEELLRSGID 113 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++ + H A D+ +V + Sbjct: 114 FDMKNRNAIDVQNIFHKMEQRTLVAAYKFYCDKDLTNAHSASADTWATYEVLKSQLDRYD 173 Query: 180 QINFGF-----------KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 ++ + F +K V + K + ++E Sbjct: 174 ELENDMKFLGDFSTRKRNADFAGFIGYDKDDVEIFTFGKHKGKKVEEVLEKE 225 >gi|254489685|ref|ZP_05102881.1| exonuclease family [Methylophaga thiooxidans DMS010] gi|224465094|gb|EEF81347.1| exonuclease family [Methylophaga thiooxydans DMS010] Length = 488 Score = 65.0 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 4/106 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTG + DR+ EI +E+ D R +Q L P R P +L GITD Sbjct: 12 VILDCETTGGRASRDRLTEIALIEVEDGHVVKR-WQTLLNP-LRPIPPWITRLTGITDAT 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 + D P+F I E + + +AHNA+FD F+ QR Sbjct: 70 VADAPTFDEIADELFACLDG--KVIVAHNARFDYSFLRQSFQRCGY 113 >gi|257898236|ref|ZP_05677889.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15] gi|257836148|gb|EEV61222.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15] Length = 1450 Score = 65.0 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 16/225 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + +F F+ P + + Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N R I Sbjct: 481 DEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLEL 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R L L K++G++ H A+ D+ + + + Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 592 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + + + + KR +P I L ++ ++ L K Sbjct: 593 HMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 633 >gi|255542840|ref|XP_002512483.1| exonuclease, putative [Ricinus communis] gi|223548444|gb|EEF49935.1| exonuclease, putative [Ricinus communis] Length = 334 Score = 65.0 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 45/202 (22%), Positives = 70/202 (34%), Gaps = 12/202 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTG + +RIIEI +L N TFQ + P GR + Sbjct: 135 IVFDLETTGFSREYERIIEIALQDLHGGE--NSTFQTLINP-GRIVPNSHIHGITTHMVC 191 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHN-AKFDVGFINAELQRINKDPLDPSRI 123 P + + + +AHN FDV F+ E +R D Sbjct: 192 KPHVPRMEDLIPILLQYIRSRQKPGGYVLLVAHNGRSFDVPFLINEFKRSGVDVPCNWLF 251 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHR---SKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL +AR+ S ++S + + S H A+ D LL+ ++ + Sbjct: 252 MDTLPLARKWMKSKGLKISSSLQGLREAFGIKLEGSAHRAMSDVRLLAKLFQMLTFNLKT 311 Query: 181 INFGFKTNEDRFFKEEKKTVPN 202 + Sbjct: 312 TLPSLVAESFTASELINVKKKK 333 >gi|289450465|ref|YP_003475243.1| DNA polymerase III subunit alpha, Gram-positive type [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185012|gb|ADC91437.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 1495 Score = 65.0 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 70/204 (34%), Gaps = 10/204 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + D+ETTGLD +R+IEIGA + + + + TF L P + +KL G Sbjct: 445 YVALDVETTGLDPVKERVIEIGAAKFVRNSSGEYEVSETFHRMLNPEVK-LPEFIMKLTG 503 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT + + DF + AHNA FD+GFI AE R + Sbjct: 504 ITQAEVDSGIKPLQAVQDLIDFVGD--LPVCAHNAMFDIGFIRAEGFRTQDINDPKLKFN 561 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMMVGGSQI 181 R L++ H A+ D+ ++ + S++ Sbjct: 562 PITIDTLRLSVLFWPSLSNHKLDTVCNFLQIDLAHHHRAVDDAIACGQIFARACQIDSEL 621 Query: 182 NFGFKTNEDRFFKEEKKTVPNISL 205 + E+ T Sbjct: 622 TLTSLNQRSGLLRPEEITDKEHKP 645 >gi|293608826|ref|ZP_06691129.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|299771039|ref|YP_003733065.1| ribonuclease T [Acinetobacter sp. DR1] gi|292829399|gb|EFF87761.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|298701127|gb|ADI91692.1| ribonuclease T [Acinetobacter sp. DR1] gi|325121407|gb|ADY80930.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse activity) [Acinetobacter calcoaceticus PHEA-2] Length = 220 Score = 65.0 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 67/191 (35%), Gaps = 16/191 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54 +V D+ET G +++ D ++EI + ++ F + P + Sbjct: 24 VVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P + ++ +E + +A + HNA FD+GF+ A + R + Sbjct: 84 IDPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFVQAAIARTS 143 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P + + + C + GI + H AL D+ ++++ Sbjct: 144 TKNQNPFHSFSVMDTVTLSAVMFGQTVLAKACIQAGIEFDGKEAHSALYDTQKTAELFCY 203 Query: 174 MMVGGSQINFG 184 ++ S Sbjct: 204 ILNKLSPYLLD 214 >gi|295092491|emb|CBK78598.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium cf. saccharolyticum K10] gi|295115331|emb|CBL36178.1| exonuclease, DNA polymerase III, epsilon subunit family [butyrate-producing bacterium SM4/1] Length = 251 Score = 65.0 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 75/211 (35%), Gaps = 9/211 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D+ETTGLD K D+IIE+GA + R + P+ R+ S L GIT Sbjct: 18 YAAIDLETTGLDPKRDKIIEVGACLVEQGK-VKRELSFLINPH-REISERVELLTGITGR 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + E F E + H+ FD F+ +L Sbjct: 76 MVEHAPGIEEVIGEIAAFVGE--LPLLGHHVIFDYSFLKHAAVNAGLPFEKNGIDTLSL- 132 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R P + +L++ C + I + H AL D+ +Y + Q N Sbjct: 133 CRRFMPPEEKKNLSAACGWFQIP--RETAHRALSDAKAAHLLYQSLRDCHFQENEEAFAA 190 Query: 189 E--DRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + K E+ R+ + RI Sbjct: 191 KPLIYKVKREQPASKRQKEGLRELAKYHRIN 221 >gi|293570615|ref|ZP_06681666.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E980] gi|291609286|gb|EFF38557.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E980] Length = 1450 Score = 65.0 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 16/225 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + +F F+ P + + Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDPG---HPLSRTTVDLTGIT 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + +AHNA FD+GF+N R I Sbjct: 481 DEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLEL 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R L L K++G++ H A+ D+ + + + Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVS--LEQHHRAIYDAEATGHL------AWIFVKEAMDNH 592 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + + + + KR +P I L ++ ++ L K Sbjct: 593 HMLYHDQLNEHIGEGDSYKRARPFHVTI----LAKNQAGLKDLFK 633 >gi|260583917|ref|ZP_05851665.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC 700633] gi|260158543|gb|EEW93611.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC 700633] Length = 1441 Score = 65.0 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 16/225 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + ++ F+ F+ P + A + Sbjct: 426 YVVFDVETTGLSAIYDSIIELAAVKMHKGNVIDK-FEEFIDPG---HPLSATTIQLTGIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S ++ +AHNA FD+GF+N ++ + I Sbjct: 482 DDMVRGSKSQAQVLKEFAAFTKDTILVAHNASFDMGFLNTGYEKEGLEKTTQPVIDTLEL 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + LN+L KRY + H A+ DS + + N Sbjct: 542 SRLLHPHLKSHRLNTLAKRYNVA--LEQHHRAVFDSETTGHLCHIFLKEA--------AN 591 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + ++ T +H ++ L K Sbjct: 592 DHGLIYHDQLNTNLHPEEVFKNGRPFHATI--FAKHQAGLKELFK 634 >gi|169827550|ref|YP_001697708.1| ATP-dependent helicase dinG [Lysinibacillus sphaericus C3-41] gi|168992038|gb|ACA39578.1| Probable ATP-dependent helicase dinG [Lysinibacillus sphaericus C3-41] Length = 923 Score = 65.0 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 74/187 (39%), Gaps = 10/187 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M+ K + D+ETTG DR+I+I V + D + RT+ F+ P G+ Sbjct: 1 MMESQK--YAIVDLETTGHSPANGDRMIQIAIVIMKD-WEIERTYTKFINP-GKAIPTFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L IT+E +KD F ++ + ++AHNA FD+ F+ AE +R Sbjct: 57 QDLTHITNEDVKDSYPFEEHADYIYELLAD--CVFVAHNADFDLSFLQAEFKRAGLPKWQ 114 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKMMVG 177 ++ S L L I +HR+ A + L + +++ Sbjct: 115 GKKMDTVELAKILFPMSLGFKLGDLAADLNIELANAHRADDDARATAELFKCCWKELLSL 174 Query: 178 GSQINFG 184 Q+ Sbjct: 175 -PQLTLE 180 >gi|319440229|ref|ZP_07989385.1| putative exonuclease [Corynebacterium variabile DSM 44702] Length = 186 Score = 65.0 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGLD +DRIIE+ A+ + + F + P GR L G+TD+ Sbjct: 22 VVVDCETTGLDPDSDRIIEVAALRVREGRPVA-LFHRVVDP-GRPLPGFITSLTGLTDQQ 79 Query: 70 LKDKPS 75 ++ P Sbjct: 80 VRQAPP 85 >gi|332291046|ref|YP_004429655.1| Exonuclease RNase T and DNA polymerase III [Krokinobacter diaphorus 4H-3-7-5] gi|332169132|gb|AEE18387.1| Exonuclease RNase T and DNA polymerase III [Krokinobacter diaphorus 4H-3-7-5] Length = 257 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 74/210 (35%), Gaps = 9/210 (4%) Query: 2 IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 ++ R I FD+ETTG++ DRI+EI +++ D + F + P Sbjct: 1 MQLKITRPICFFDLETTGINVAKDRIVEISILKVFPDGRE--EEFTERINP-TVPIPAAT 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGI+D + DKP+F++ + +D + + N ++ + + +D Sbjct: 58 TAVHGISDADVVDKPTFAARAKDVYDIIKDADLAGFNSNRFDI----PLLVEELLRSGID 113 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++ + H A D+ +V + Sbjct: 114 FDMKNRNAIDVQNIFHKMEQRTLVAAYKFYCGKDLTNAHSASADTWATYEVLKSQLDRYD 173 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRD 209 ++ K D ++++ +D Sbjct: 174 ELENDMKFLGDFSTRKKQADFAGFIGYDKD 203 >gi|306835084|ref|ZP_07468126.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC 49726] gi|304569032|gb|EFM44555.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC 49726] Length = 231 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 4/98 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG++ + DRIIE+ AV + ++ L P+G+ + +HGIT++ Sbjct: 31 FAVIDTETTGVNKRYDRIIELAAVRADAHFNPVDSWHTLLSPDGKAI--KNSHIHGITND 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 + P+FS ++ +F + + +AHNA FD I Sbjct: 89 MVATAPTFSDVYGDFTSYIDGMQ--LLAHNAPFDSKMI 124 >gi|283796625|ref|ZP_06345778.1| DNA polymerase III PolC-type [Clostridium sp. M62/1] gi|291076048|gb|EFE13412.1| DNA polymerase III PolC-type [Clostridium sp. M62/1] Length = 251 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 75/211 (35%), Gaps = 9/211 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D+ETTGLD K D+IIE+GA + R + P+ R+ S L GIT Sbjct: 18 YAAIDLETTGLDPKRDKIIEVGACLVEQGK-VKRELSFLINPH-REISERVELLTGITGR 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + E F E + H+ FD F+ +L Sbjct: 76 MVEHAPGIEEVIGEIAAFVGE--LPLLGHHVIFDYSFLKHAAVNAGLPFEKNGIDTLSL- 132 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R P + +L++ C + I + H AL D+ +Y + Q N Sbjct: 133 CRRFMPPEEKKNLSAACGWFQIP--RETAHRALADAKAAHLLYQSLRDCHFQENEEAFAA 190 Query: 189 E--DRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + K E+ R+ + RI Sbjct: 191 KPLIYKVKREQPASKRQKEGLRELAKYHRIN 221 >gi|206560423|ref|YP_002231187.1| putative exonuclease [Burkholderia cenocepacia J2315] gi|198036464|emb|CAR52360.1| putative exonuclease [Burkholderia cenocepacia J2315] Length = 205 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 8/170 (4%) Query: 7 MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+ + V D ETTGL DR EI + L D +R FQ + GR+ + + L G Sbjct: 1 MQTVAVLDFETTGLSPNLGDRATEIAVILLRDGEVVDR-FQSLMN-AGRRIPSDVVALTG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT++ + P S + E F + +AHNA FD F + Sbjct: 59 ITNDMIAAAPPASEVMKEAAAFVGK--HAVVAHNAGFDKRFWQ--SELGLLGMSADHAFA 114 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ +ARR +P +R+ S H A++D+ + ++ ++ Sbjct: 115 CTMLVARRIYPDARSHRLSSLIEMLRLPQSGRAHRAMVDAEMAGHLWCRL 164 >gi|291531228|emb|CBK96813.1| exonuclease, DNA polymerase III, epsilon subunit family [Eubacterium siraeum 70/3] Length = 458 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 7/189 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNG--RKNSPEALKLHGI 65 +V+D+ETTGL+S+ +I+IGAV+++D +TF+ + P S K+ GI Sbjct: 271 FVVYDLETTGLNSEFHAVIQIGAVKVVDGVVDESQTFEELVNPKYSKVSVSDNITKITGI 330 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE K+ + EF F + + A A I+ Sbjct: 331 TDEEAKNARQVWEVIPEFVKFIGDDTLAGFNNAAFDSKFLERAGRHSNIIITNKQFDIMK 390 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++K N I + H AL D+ + VYIK+ Q++ G Sbjct: 391 YAKRIKKKCNLEINGDELNNYAEYFGIKNEKAHTALSDAITTAKVYIKL----RQLDEGK 446 Query: 186 KTNEDRFFK 194 ++E+ Sbjct: 447 SSSENDGLD 455 >gi|240144403|ref|ZP_04743004.1| putative DNA polymerase III, alpha chain [Roseburia intestinalis L1-82] gi|257203586|gb|EEV01871.1| putative DNA polymerase III, alpha chain [Roseburia intestinalis L1-82] Length = 235 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 48/216 (22%), Positives = 87/216 (40%), Gaps = 16/216 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+E TGL++K D I+E+GAV + ++ ++ F LC K + +L GIT+ Sbjct: 4 YVVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDK-FGAILC-QNVKIPEKVTELTGITEA 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +F++F E + N FD GF+ N + L+ Sbjct: 62 MVQGGMEKEEAMRQFFEFIGE--DIIVGQNVIFDYGFLKQWAVNHNMPLERSAVDTLKLA 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + DL SLC +G+ + H A D++ +Y + + + G Sbjct: 120 RKFLPK-EQKKDLESLCAYFGVK--RENAHRAFDDAYETWQIYEALRERYEEESAGDFMP 176 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224 + +K +K+T +K + E H Sbjct: 177 KPLLYKAKKQTPATARQIKYLR---------EYAAH 203 >gi|116333503|ref|YP_795030.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367] gi|116098850|gb|ABJ63999.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367] Length = 948 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 7/176 (3%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V DIETTG DRII+IG V + +++ F+ + P ++ +L GIT+ Sbjct: 7 YAVVDIETTGTSVTDGDRIIQIGCV-FVQHNQVINHFETDVNP-LKEIPAAISRLTGITN 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++ P F + + N ++AHN FD+ FINAEL+R+ L + + Sbjct: 65 KRVRHAPLFDDVAGTLYSLL--TNTVFVAHNVNFDLPFINAELERVGYPALPIAAVDTVS 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++ L L + + I + H A D+ ++++I + + Sbjct: 123 LSQILLPTATSFRLRDLSRLFNIEH--DNPHSADSDASATAELFIFLFRRLRALPM 176 >gi|116492693|ref|YP_804428.1| Rad3-related DNA helicase [Pediococcus pentosaceus ATCC 25745] gi|116102843|gb|ABJ67986.1| Rad3-related DNA helicase [Pediococcus pentosaceus ATCC 25745] Length = 929 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 7/180 (3%) Query: 5 NKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 NK + V D+E TG D D RII+IG + + TFQ + P R KL Sbjct: 2 NKTKYAVVDLEMTGSDFDGDNRIIQIGCAFVENGKIV-DTFQSKVNPQ-RPIPAGITKLT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITDE +++ P F+ I E + + ++AHN +FD F+N EL R L+ + Sbjct: 60 GITDEQVQNAPKFNDIVDEVYRKLVD--TVFVAHNVEFDFPFLNQELVRSGYPELNIPAV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L I H A D+ +++ I + Q+ Sbjct: 118 DTVSLSQIVFSFTKGYRLRDLTSYLKIEH--DDPHSADSDAIATANLLIAIKKNLQQLPI 175 >gi|315644054|ref|ZP_07897224.1| DNA polymerase III subunit epsilon [Paenibacillus vortex V453] gi|315280429|gb|EFU43718.1| DNA polymerase III subunit epsilon [Paenibacillus vortex V453] Length = 397 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 69/217 (31%), Gaps = 3/217 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + VFD+E T +N ++EIGAV + + +TF ++ P+G GI Sbjct: 24 KFCVFDLEATDDQVENAEVVEIGAVRMDSTGIQEEQTFHTYIKPSG-PIPQPIAVSTGIY 82 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ P F + F F NE + +P +P I Sbjct: 83 NADVEGSPRFPKGYGMFTGFANECIFVTYGGYEFVLPLLQRECARHGLPEPANPCIDIKA 142 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185 + + + YG + + + L+ +++ MM + Sbjct: 143 MFAGLHPEVEDEITMEMMMDYYGFETTSHKSGNRIGNYMLIGHIWMDMMQELKARSIQHL 202 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222 + E K + K F +T + Sbjct: 203 EYPEPLIVKRFQHPSKRSVDTGSRKVRFPALTDSQRK 239 >gi|302533719|ref|ZP_07286061.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] gi|302442614|gb|EFL14430.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] Length = 332 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 8/163 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ L + + P + P +HG+T Sbjct: 27 YAVVDVETTGL-ARDDRIVSAAVYRLDAQGNVEDHWYTLVNP---RRDPGPTWIHGLTSA 82 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P F+ I EF + +AHNA FD I E R + R+ Sbjct: 83 MLQDAPLFADIAEEFAGRLAD--RVLVAHNAIFDWQMIAREYARASATAPVRQRLCTIAL 140 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P + L SL YG+ H AL D+ +L++ + Sbjct: 141 SKELNLPLPNHKLESLAAHYGVVQQRA--HHALDDARVLAEAF 181 >gi|118586857|ref|ZP_01544291.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163] gi|290890494|ref|ZP_06553569.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429] gi|118432689|gb|EAV39421.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163] gi|290479890|gb|EFD88539.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429] Length = 1437 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 12/186 (6%) Query: 2 IRKNKMRKI-------VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 I N R+I +FDIETTGL + ND+II++ AV++ + TF F+ P G Sbjct: 396 IAINTNREILKDCQYTIFDIETTGLSAVNDKIIQLSAVKMKNGVVL-DTFDQFINP-GFP 453 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 S + + L GITD+ +K+ + + F HN ++ Sbjct: 454 LSEQTINLTGITDDLVKNSKPEAEVLKMFQQ--FYAGTILAGHNVIKFDYGFVNHALAVH 511 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 K P + +IDTL++AR +P+ + +++ H A+ DS + Sbjct: 512 KLPKINTLVIDTLNLARWLYPNFGRYTLDFLSKK-FSVNLEHHHRAIDDSTATGMLLHIF 570 Query: 175 MVGGSQ 180 + + Sbjct: 571 LKEAEE 576 >gi|302880064|ref|YP_003848628.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans ES-2] gi|302582853|gb|ADL56864.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans ES-2] Length = 204 Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 8/175 (4%) Query: 7 MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M + V D ETTG+ + DR E+ V + D ++R +Q + G P L G Sbjct: 1 METVAVIDFETTGMSPELGDRATEVAVVIVSDGKISSR-YQSLMN-TGAYIPPFIEDLTG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I++E ++ P + + E DF A W+AHNA FD F++AE R+ Sbjct: 59 ISNEMIRQAPPAAQVMKELADFVGA--APWVAHNASFDSRFLDAEWSRMGHR--REQAFA 114 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ +ARR +P S N R+ H AL D+ + + ++++M+ Sbjct: 115 CSMLLARRLYPDSPNHKLGTLVRFLGLPDTARHHRALADAEMTAHLWLRMVSDLK 169 >gi|150020376|ref|YP_001305730.1| DNA polymerase III, epsilon subunit [Thermosipho melanesiensis BI429] gi|149792897|gb|ABR30345.1| DNA polymerase III, epsilon subunit [Thermosipho melanesiensis BI429] Length = 184 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNR-TFQVFLCPNGR 53 MI +N V D ETTGL+ DRIIE+ V + + + P+ + Sbjct: 1 MIDENV--YCVLDTETTGLNPYFGDRIIEVAIVPIYKGKIIESWIYHSLVNPHIK 53 >gi|227529104|ref|ZP_03959153.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540] gi|227350948|gb|EEJ41239.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540] Length = 1442 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL + D++IE+ A ++ D R F F+ P G S + L ITDE Sbjct: 425 YVIFDVETTGLSAIYDKVIELSASKMKDGEVLER-FDEFIDP-GFPLSEQTTNLTSITDE 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ S +F F DF HN FD+GF+N +R N + + I Sbjct: 483 MVQGSKSEEEVFRMFRDFCEG--CIIAGHNVSFDMGFMNTGYRRHNMEEITAPVIDTLPL 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 LN+L K++ + + H H A D+ + + + Sbjct: 541 ARFLYPHMRGYRLNTLSKKFKVALEH--HHRANYDAEATGKLLHIFLKDAEK 590 >gi|37526494|ref|NP_929838.1| ribonuclease T [Photorhabdus luminescens subsp. laumondii TTO1] gi|54036329|sp|Q7N3W0|RNT_PHOLL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|36785925|emb|CAE14977.1| ribonuclease T [Photorhabdus luminescens subsp. laumondii TTO1] Length = 217 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L + + + P G P AL+ G Sbjct: 20 VVIDVETGGFNAKTDALLEIAAVTLEMDGEGWLTPGESLHFHIEPFEGANLEPAALEFTG 79 Query: 65 ITD--------EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + + A +AHNA FD F+ A +R Sbjct: 80 IDPLNPLRGAVSEYEALHAIFKMVRKGIKNNHCNRAIIVAHNANFDHSFVMAATERTGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI + H AL D+ ++++ +M+ Sbjct: 140 RNPFHPFATFDTAALGGLVLGQTILAKACITAGIPFDNNQAHSALYDTDRTAELFCEMVN 199 Query: 177 GGSQIN 182 Q+ Sbjct: 200 RWKQLG 205 >gi|317125104|ref|YP_004099216.1| DNA polymerase III subunit epsilon [Intrasporangium calvum DSM 43043] gi|315589192|gb|ADU48489.1| DNA polymerase III, epsilon subunit [Intrasporangium calvum DSM 43043] Length = 590 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 61/203 (30%), Gaps = 4/203 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+E+TG I EIGAV++ FQ + P L GITD Sbjct: 20 FVVVDLESTGGSPAQCGITEIGAVKVRGGDVIGE-FQTLVNP-AEPIPAFISVLTGITDA 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P S F F + + +AHNA FD+ F+ A R + Sbjct: 78 MVADSPRIESAFPAFLE--FAAGSVLVAHNAGFDISFLKAAAVRTGTPWPGFDVLDTLTL 135 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + H AL D+ DV ++ + Sbjct: 136 ARQLVTRDEVPNHKLSSLARVFASPTTPDHRALHDARATVDVLHGLIERVGNLGVHTLEE 195 Query: 189 EDRFFKEEKKTVPNISLLKRDKP 211 + L P Sbjct: 196 LASYTSRVSPAQRRKRFLADALP 218 >gi|150018035|ref|YP_001310289.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB 8052] gi|149904500|gb|ABR35333.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB 8052] Length = 1446 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 80/206 (38%), Gaps = 7/206 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG + ++I EIG +++ D ++ F F+ P + +++ ITD+ Sbjct: 423 YCVLDLETTGFSPQTEKITEIGVMKIKDGKVIDK-FSTFVNPQ-KSIPMRVVEVTKITDD 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + +F + +F + +AHNA FD+GF+ + + + L+ Sbjct: 481 MVKNAETIDKVFPKLLEFIEG--SVLVAHNADFDIGFLKHNAKVLGYEFDFTYIDTLGLA 538 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + I H AL D V+ ++ + ++ Sbjct: 539 QDVFPDYKSYKL---GRIAKNLGIKVEVAHRALDDVDTTVKVFNIIIEKLKERGAQTLSD 595 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 D + +E+ +K + Sbjct: 596 IDLYAADEEAKKVAYKKVKTHHAIIL 621 >gi|319953453|ref|YP_004164720.1| DNA polymerase iii, alpha subunit [Cellulophaga algicola DSM 14237] gi|319422113|gb|ADV49222.1| DNA polymerase III, alpha subunit [Cellulophaga algicola DSM 14237] Length = 1479 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 76/250 (30%), Gaps = 31/250 (12%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + D R I+I D + P+G + Sbjct: 2 YLIFDTETTGLPKRWDVPFTDTDNWPRCIQIAWQLHDDMGNLIEHQDYLVQPDGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A ++HGI+ + K ++ E ++ + + N FD+ + AE R+ + Sbjct: 62 AEQIHGISTALAEQKGVPLAVVLEKFNEAMAKTKFVVGQNVGFDLNIMGAEFHRMGVENP 121 Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + Y + H A D + Sbjct: 122 LQELPVLDTCTEHTATLCQIPGGRGGKFKLPTLTELHHYLFGVGFGEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 +++++ D F + I L+ + + + Sbjct: 182 CFLELVRKQQYTIEKLDVQPDYFKNFSEANPQEIQLIGLKHINLKKAS-----------K 230 Query: 230 TLGKNAIWDR 239 + +A+WD+ Sbjct: 231 KIA-DALWDK 239 >gi|225374652|ref|ZP_03751873.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM 16841] gi|225213511|gb|EEG95865.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM 16841] Length = 228 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 61/180 (33%), Gaps = 10/180 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTG D +IEI AV++ F + P R A ++ I+DE Sbjct: 17 YVLFDLETTGTSCIYDEVIEISAVKVRSGKVV-EEFSQLVNPK-RPIPYAASMVNHISDE 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++P F + EF + + HN + + +DTL Sbjct: 75 MVANEPDFGQVLPEFLT--FAGDDILVGHNIQTFDMKFLYRDCERLFQQKLTNDYVDTLR 132 Query: 129 IARRKHPSSRNDL------NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +A+ P R+ + G + L+ KM Q Sbjct: 133 VAKLCFPEWRHRRLSDLAEHYGISTRGAHRALTDCKMNQQVFEYLAKELEKMPAAKKQSK 192 >gi|326332133|ref|ZP_08198417.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] gi|325950104|gb|EGD42160.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] Length = 228 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 61/177 (34%), Gaps = 5/177 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGLD DR+I++ ++ ++ + P G P +++HG+T Sbjct: 29 FAVLDVETTGLDPYRDRVIQVAIRQIAADGTAESEWETLVNP-GAGVDPGPVEVHGLTTA 87 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F + + + + + + ++ + + LD + Sbjct: 88 DLAGAPPFRDVAATIAERLAGRVFVAHNAAFDWAFVAVESDRAGVRLEVLDWLCTMRFAK 147 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 P + + H A D+ + +++ ++ + + Sbjct: 148 ALALDVPDKSLATIAAY----YAVEQLKAHDAGDDTRVAAEILLRELADADRAGLML 200 >gi|193076779|gb|ABO11496.2| ribonuclease T [Acinetobacter baumannii ATCC 17978] Length = 220 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 16/191 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54 +V D+ET G +++ D ++EI + ++ F + P + Sbjct: 24 VVVDVETAGFNAQTDALLEIACIPIVYNAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P + ++ +E + +A + HNA FD+GF+ A + R Sbjct: 84 IDPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFLQAAIARSG 143 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P + + + C + GI + H AL D+ ++++ Sbjct: 144 TKNQNPFHSFSVMDTVTLSAVMFGQTVLAKACIQAGIEFDGKEAHSALYDTQKTAELFCY 203 Query: 174 MMVGGSQINFG 184 ++ S Sbjct: 204 ILNKLSPYLLD 214 >gi|169633084|ref|YP_001706820.1| ribonuclease T [Acinetobacter baumannii SDF] gi|169796663|ref|YP_001714456.1| ribonuclease T [Acinetobacter baumannii AYE] gi|184157422|ref|YP_001845761.1| ribonuclease T [Acinetobacter baumannii ACICU] gi|213156111|ref|YP_002318531.1| ribonuclease T [Acinetobacter baumannii AB0057] gi|215484153|ref|YP_002326378.1| ribonuclease T [Acinetobacter baumannii AB307-0294] gi|239503321|ref|ZP_04662631.1| ribonuclease T [Acinetobacter baumannii AB900] gi|260550758|ref|ZP_05824966.1| ribonuclease T [Acinetobacter sp. RUH2624] gi|260557371|ref|ZP_05829586.1| ribonuclease T [Acinetobacter baumannii ATCC 19606] gi|301347763|ref|ZP_07228504.1| ribonuclease T [Acinetobacter baumannii AB056] gi|301512246|ref|ZP_07237483.1| ribonuclease T [Acinetobacter baumannii AB058] gi|301596674|ref|ZP_07241682.1| ribonuclease T [Acinetobacter baumannii AB059] gi|332854542|ref|ZP_08435420.1| ribonuclease T [Acinetobacter baumannii 6013150] gi|332870163|ref|ZP_08439075.1| ribonuclease T [Acinetobacter baumannii 6013113] gi|332875101|ref|ZP_08442937.1| ribonuclease T [Acinetobacter baumannii 6014059] gi|169149590|emb|CAM87480.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse activity) [Acinetobacter baumannii AYE] gi|169151876|emb|CAP00718.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse activity) [Acinetobacter baumannii] gi|183209016|gb|ACC56414.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU] gi|213055271|gb|ACJ40173.1| ribonuclease T [Acinetobacter baumannii AB0057] gi|213986450|gb|ACJ56749.1| ribonuclease T [Acinetobacter baumannii AB307-0294] gi|260406264|gb|EEW99748.1| ribonuclease T [Acinetobacter sp. RUH2624] gi|260408997|gb|EEX02300.1| ribonuclease T [Acinetobacter baumannii ATCC 19606] gi|322507302|gb|ADX02756.1| Ribonuclease T [Acinetobacter baumannii 1656-2] gi|323517321|gb|ADX91702.1| ribonuclease T [Acinetobacter baumannii TCDC-AB0715] gi|332727951|gb|EGJ59346.1| ribonuclease T [Acinetobacter baumannii 6013150] gi|332732430|gb|EGJ63686.1| ribonuclease T [Acinetobacter baumannii 6013113] gi|332736718|gb|EGJ67709.1| ribonuclease T [Acinetobacter baumannii 6014059] Length = 220 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 16/191 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54 +V D+ET G +++ D ++EI + ++ F + P + Sbjct: 24 VVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P + ++ +E + +A + HNA FD+GF+ A + R Sbjct: 84 IDPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFLQAAIARSG 143 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P + + + C + GI + H AL D+ ++++ Sbjct: 144 TKNQNPFHSFSVMDTVTLSAVMFGQTVLAKACIQAGIEFDGKEAHSALYDTQKTAELFCY 203 Query: 174 MMVGGSQINFG 184 ++ S Sbjct: 204 ILNKLSPYLLD 214 >gi|296533190|ref|ZP_06895816.1| exonuclease RNase T and DNA polymerase III [Roseomonas cervicalis ATCC 49957] gi|296266484|gb|EFH12483.1| exonuclease RNase T and DNA polymerase III [Roseomonas cervicalis ATCC 49957] Length = 304 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 79/239 (33%), Gaps = 33/239 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL---LDYSK--TNRTFQVFLCPNGRKNSPEALKLHGI 65 V D+ETTGLD D IIE+ + LD + F P R PE L G+ Sbjct: 52 VLDVETTGLDHGQDEIIELAMLPFTYGLDGTLYSVGEAFSRLRQP-ARPIPPEVTALTGL 110 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD + + S E F A IAHNA FD F + D Sbjct: 111 TDAMVAGQ----SFTPEEVAAFIGPAALVIAHNAGFDRRFA----EAFCPDFAAKPWACS 162 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV------------YIK 173 + L L R+G+ H A+ D ++ ++ Sbjct: 163 LHGVDWAAEGFEGRRLGDLAARHGLFF---DGHRAVHDCQATLEILARPLPRSGVPALVR 219 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVP----NISLLKRDKPLFTRITKEELDEHDKTI 228 ++ + ++ F +++ N R + + + +E+L+ + Sbjct: 220 LLEAARRPSWRIWAEGAPFAAKDRLKARGYRWNGEANGRPRAWYIEVAEEQLEAETAFL 278 >gi|254774974|ref|ZP_05216490.1| hypothetical protein MaviaA2_09919 [Mycobacterium avium subsp. avium ATCC 25291] Length = 648 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +V D+ETTG S + D I EIGAV++ D F + P R P+ ++L Sbjct: 45 FVVVDLETTGGRSTSTGETAPDAITEIGAVKVRDGVVLGE-FATLVDPQ-RSIPPQIMRL 102 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDPS 121 GIT + D P+ ++ F +F A +AHNA FDVGF+ A Q+ + P Sbjct: 103 TGITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRPR 162 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + R + ++ + H AL D+ DV ++ Sbjct: 163 VLCTVRLARRVLSREEAPSVRLASLARLFAVTTQPTHRALDDARATVDVLHALIER 218 >gi|210621010|ref|ZP_03292395.1| hypothetical protein CLOHIR_00338 [Clostridium hiranonis DSM 13275] gi|210154994|gb|EEA86000.1| hypothetical protein CLOHIR_00338 [Clostridium hiranonis DSM 13275] Length = 276 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 4/104 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTGL++ + I EI A++ F ++ P + + L GIT+E Sbjct: 96 YIVFDLETTGLEAHKEAITEIAAIKFDYDEPV-EYFHTYVNPKKKIR-EKITDLTGITNE 153 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + P + F F ++ I+HN FD+ FI + Sbjct: 154 MVASAPPIEYVLPNFLKFIDK--YTLISHNVSFDMSFILDPMYN 195 >gi|118466522|ref|YP_881505.1| hypothetical protein MAV_2300 [Mycobacterium avium 104] gi|118167809|gb|ABK68706.1| DNA polymerase III, epsilon subunit [Mycobacterium avium 104] Length = 643 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +V D+ETTG S + D I EIGAV++ D F + P R P+ ++L Sbjct: 40 FVVVDLETTGGRSTSTGETAPDAITEIGAVKVRDGVVLGE-FATLVDPQ-RSIPPQIMRL 97 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDPS 121 GIT + D P+ ++ F +F A +AHNA FDVGF+ A Q+ + P Sbjct: 98 TGITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRPR 157 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + R + ++ + H AL D+ DV ++ Sbjct: 158 VLCTVRLARRVLSREEAPSVRLASLARLFAVTTQPTHRALDDARATVDVLHALIER 213 >gi|71894029|ref|YP_278137.1| DNA polymerase III PolC [Mycoplasma synoviae 53] gi|71850817|gb|AAZ43426.1| DNA polymerase III alpha subunit [Mycoplasma synoviae 53] Length = 1451 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 3/199 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFDIETT L + + IIE A + + + ++ +F+ + + + Sbjct: 410 RYVVFDIETTSLSAYHGEIIEFAATIIENKAVVDKV-DIFIKSKEKLSHFTTRLTSITNE 468 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + +D N +AHNA FD F+ + + N + I + Sbjct: 469 MLDQKGIELKEALQKIYDVL--NNNVAVAHNANFDYNFLIEKFDQNNMQAPKCTFIDSLV 526 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +++LN C+ + H AL D+ +L+D +I+ + I Sbjct: 527 VSRILFEHRDKHNLNEFCRNLSVNYDTEKAHRALYDTEVLADAWIEATLKLKDIKQISNF 586 Query: 188 NEDRFFKEEKKTVPNISLL 206 E +K + SL Sbjct: 587 QELSEYKSDALFSKYFSLY 605 >gi|34541463|ref|NP_905942.1| exonuclease [Porphyromonas gingivalis W83] gi|34397780|gb|AAQ66841.1| exonuclease [Porphyromonas gingivalis W83] Length = 259 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 8/171 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTG+D DRI+EI ++++ D S+ +T + P R PE+ +HGI DE Sbjct: 10 IFFDLETTGVDLVRDRIVEISILKVMPDGSEECKT--RRINPE-RPIPPESTAIHGIRDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P F S+ + + + L+ L ++ID + Sbjct: 67 DVKDCPPFRSVAKSLAQWIEGCDLAGFNSTRFDVPMLVEEFLRAGVDIDLRHRKLIDVQT 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I + P R+ + + H A D+ DV+ + Sbjct: 127 IFHKMEP----RTLEAATRFYCNRTLENAHSAEADTRATYDVFKAQLDRYE 173 >gi|326803355|ref|YP_004321173.1| putative DNA polymerase III, epsilon subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326650663|gb|AEA00846.1| putative DNA polymerase III, epsilon subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 173 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL + +II+I AV D + F + P+ R + +L GI+D Sbjct: 13 YVAFDLETTGLGFSS-KIIQISAVHFRDGKEIG-AFDQLVNPD-RPIPAKITQLTGISDA 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97 + P+ + +F F + Sbjct: 70 DVYLSPTIDQVIHDFMAFIKDLPLAGYNS 98 >gi|262365379|gb|ACY61936.1| DNA polymerase III, epsilon chain [Yersinia pestis D182038] Length = 122 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 6/120 (5%) Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + + F + Sbjct: 1 MARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLTFSMEGE 60 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIWDRYISSNQ 245 + E T++EL H+ + G + +W + + + Sbjct: 61 VSQNNASEDIQRITRPAS---ALKIIYATEDELANHESRLDFVMKKGGSCLWRMPLEAEE 117 >gi|161507964|ref|YP_001577928.1| DNA polymerase [Lactobacillus helveticus DPC 4571] gi|160348953|gb|ABX27627.1| DNA polymerase [Lactobacillus helveticus DPC 4571] Length = 317 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 8/201 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70 D+ETTGL DRI E+G V++ + ++ + + P K KL+GIT+E + Sbjct: 36 LDVETTGLSPFRDRITELGGVKVRNGQIVDQ-YTNLVKFPKNNKVPAFITKLNGITEEQI 94 Query: 71 KDKPSF-SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ EF +F + N + +L + P+ + +D L + Sbjct: 95 TNEGIPAEQAIKEFREFIGDDTIIGYNVNFDLN---FLYDLSQKYNLPVLNNDYVDVLRL 151 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 AR +P N L +R GI +H L DS VY ++ + Sbjct: 152 ARVYYPRQHNRLIDCMQRAGIA--QVEQHHGLADSLDTIKVYNDFNQHFTEDLLEQAIGK 209 Query: 190 DRFFKEEKKTVPNISLLKRDK 210 + V L R+ Sbjct: 210 IKNVDLTGDEVDYYQLGFRNP 230 >gi|315127113|ref|YP_004069116.1| hypothetical protein PSM_A2044 [Pseudoalteromonas sp. SM9913] gi|315015627|gb|ADT68965.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913] Length = 718 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 2/93 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG +RI EIG V++ T+ + P R L GI D + Sbjct: 556 VVDIETTGGLKGGNRITEIGIVKIKQGEIV-DTWTTLINPE-RPIPRFITSLTGINDAMV 613 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103 + P FS I + + + N + Sbjct: 614 SNAPIFSEIAAPLLNQLSGSIFVAHNVNFDYGF 646 >gi|313115651|ref|ZP_07801107.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310622037|gb|EFQ05536.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 1417 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 68/195 (34%), Gaps = 6/195 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD ETTGLD + + EIGAV + + F F+ P G+ +P+ +L GIT+E + Sbjct: 399 VFDTETTGLDPGVEYMTEIGAVIVKNGEVV-EEFDTFVKP-GKPITPKITELTGITNEMV 456 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D P F + + HN + + L+P+ I Sbjct: 457 ADAPGEKEALEAFLK--FAGDRILVGHNVHAFDMRFLRAAAKRSGIKLEPTYIDTLTMAQ 514 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 ++ K + H A DS L ++ M+ + + + Sbjct: 515 AMYPGLHNYKQGTINKHLELP--AYEAHRACEDSAALGRIFGVMLNDLKEKQVAKVSEIN 572 Query: 191 RFFKEEKKTVPNISL 205 ++ + Sbjct: 573 TGLGGNREVLKKKYY 587 >gi|307564574|ref|ZP_07627114.1| exonuclease [Prevotella amnii CRIS 21A-A] gi|307346732|gb|EFN92029.1| exonuclease [Prevotella amnii CRIS 21A-A] Length = 287 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 72/198 (36%), Gaps = 6/198 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGLD NDRII+I +++ K R +F+ P G++ E + L GIT+E Sbjct: 10 IVFDLETTGLDLVNDRIIQISYIKVYPDGKEERE-NIFINP-GKQIPEEVIALTGITNED 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P+F E F + N L+ + +++D SI Sbjct: 68 VAKAPTFKEKGKELSLKFTGCDFAGFNSNRFDIPMLAEEFLRAGIEFDFSKCQLVDAQSI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + + A + + + +T+E Sbjct: 128 FHK----MERRNLAAAYEFYCGRKMEEDFKAHRADQDTEATWAVLQGEIEMYSSKNQTDE 183 Query: 190 DRFFKEEKKTVPNISLLK 207 R + + + S + Sbjct: 184 KRILENSVDALADFSKMN 201 >gi|255324960|ref|ZP_05366068.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|255298020|gb|EET77329.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] Length = 98 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 23/43 (53%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 +V D ETTG + + DRIIE+ AV Y ++ L P+ Sbjct: 31 FVVIDTETTGFNKRYDRIIELAAVRADAYFNPVDSWHTLLTPD 73 >gi|323358024|ref|YP_004224420.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum StLB037] gi|323274395|dbj|BAJ74540.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum StLB037] Length = 405 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTGL K+DRI+E+ V + ++ + P A ++HGI+ Sbjct: 5 FAVIDLETTGLFPQKHDRIVEVAIVHVSPAGVVEGVWETLVNP---MRDMGAQRIHGISA 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 P FS++ +AHNA FD F+ ++ D + + T+ Sbjct: 62 AAAARAPEFSALAPSIASLLRG--RVPVAHNASFDARFLAHSMEHAGLACPDLAYWMCTM 119 Query: 128 S 128 Sbjct: 120 Q 120 >gi|291527626|emb|CBK93212.1| exonuclease, DNA polymerase III, epsilon subunit family [Eubacterium rectale M104/1] Length = 260 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 7/177 (3%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N V D+E TGL +KND+IIEIGA + T + P + +L Sbjct: 20 DNIKNYTVIDLEMTGLSAKNDKIIEIGAARVRGGEIV-DTISTLVNPK-QHIPQRVQELT 77 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD +++ DF + + N FD F+ + + Sbjct: 78 GITDSDVENAADMDVAVDNLLDFIGD--DIILGQNVTFDYSFLKQWAVNHKRTLSLNAYD 135 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ L LC+ + ++ + H AL D+ ++ K++ + Sbjct: 136 TLKIARKCLPA-EQSKKLEDLCEYFDVS--RENAHRALDDAIETKQIFEKLLALMDE 189 >gi|88801444|ref|ZP_01116972.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P] gi|88782102|gb|EAR13279.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P] Length = 462 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 72/204 (35%), Gaps = 7/204 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V DIETTG K +I EI A+ + D K F + P + L GIT Sbjct: 1 MLYAVVDIETTGNGPKGQKITEISAL-IFDGKKIVDEFTSLVNPE-QNIPAFITSLTGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +++ P F I + + +N ++AHN FD I AE + + D Sbjct: 59 NAMVRNAPRFFEIAKKVAE--ITENTIFVAHNVNFDYNIIQAEFKSLGFDFKRKKLCTIR 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L+ S + G I +H A D+ +++ +++ Sbjct: 117 LTRKIIPGLPSYSL---GNICTGENIPINGRHRAKGDAEATAELLRRLIERDENFTINSF 173 Query: 187 TNEDRFFKEEKKTVPNISLLKRDK 210 N + I + + Sbjct: 174 LNPKSRQATLPPLIDKIVIDNLPE 197 >gi|325529244|gb|EGD06199.1| DNA polymerase III, epsilon subunit [Burkholderia sp. TJI49] Length = 205 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 8/170 (4%) Query: 7 MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+ + V D ETTGL DR EI + L D +R +Q + GR+ + + L G Sbjct: 1 MQTVAVLDFETTGLSPNLGDRATEIAVILLRDGQIVDR-YQSLMN-AGRRIPSDVVALTG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT++ + P + + E F + +AHNA FD F + D Sbjct: 59 ITNDMIASAPPAAKVMKEAAAFVGK--HAVVAHNAGFDKRFWQ--AELGRLDVSAEHAFA 114 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ +ARR +P +R+ S H A++D+ + ++ ++ Sbjct: 115 CTMLVARRIYPDARSHRLSSLAEMLQLPKSGRAHRAMVDAEMAGHLWCRL 164 >gi|144901019|emb|CAM77883.1| DNA polymerase III epsilon chain-like protein [Magnetospirillum gryphiswaldense MSR-1] Length = 619 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + FD ETTGL + DR+I++GAV + + +F+ + P G +++ HGI+ Sbjct: 430 FVAFDCETTGLRPDQGDRLIQVGAVRIGQGRVLSGESFERLIDP-GIPIPAQSMAYHGIS 488 Query: 67 DEFLKDKPS 75 ++ +K KP Sbjct: 489 NDMVKGKPP 497 >gi|291450661|ref|ZP_06590051.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] gi|291353610|gb|EFE80512.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] Length = 345 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 8/163 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ G +L + + + P P + +HG+T Sbjct: 40 YAVVDVETTGL-ARDDRIVSAGVYQLDALGRVEDHWYTLVNPER---DPGPVWIHGLTTG 95 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD P F I E + +AHNA FD + E R + R+ Sbjct: 96 VLKDAPLFKDISDELSARLAD--RVLVAHNAAFDWSMLAREYARAERVAPVRQRLCTIAL 153 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P + L SL +G+ H AL D+ +L++ + Sbjct: 154 SKELGLPLPNHKLESLAAHFGVV--QERAHHALDDARVLAEAF 194 >gi|239978772|ref|ZP_04701296.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] Length = 324 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 8/163 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ G +L + + + P P + +HG+T Sbjct: 19 YAVVDVETTGL-ARDDRIVSAGVYQLDALGRVEDHWYTLVNPER---DPGPVWIHGLTTG 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD P F I E + +AHNA FD + E R + R+ Sbjct: 75 VLKDAPLFKDISDELSARLAD--RVLVAHNAAFDWSMLAREYARAERVAPVRQRLCTIAL 132 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P + L SL +G+ H AL D+ +L++ + Sbjct: 133 SKELGLPLPNHKLESLAAHFGVV--QERAHHALDDARVLAEAF 173 >gi|251796459|ref|YP_003011190.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp. JDR-2] gi|247544085|gb|ACT01104.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp. JDR-2] Length = 953 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 74/177 (41%), Gaps = 6/177 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ V D+ETTG +D I+++G L D + T+ F+ P + +L GI Sbjct: 1 MKFAVLDLETTGHSVSDD-ILQVGLAVLDDNLEIVETYSSFVRP-TIEIPAFITQLTGID 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P + + + + A +AHN FD GF+N L R P R+ Sbjct: 59 ADMVADAPELDEVLMQLIPYLED--AVLVAHNVNFDAGFLNQALDRCGYHPFIGRRLDTI 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + L ++ + +GI H A D+ ++++ + + Q+ Sbjct: 117 ELLRILYPSITTYQLGAVTELFGIAH--DQHHRADSDAIATAELFAQSVQKLRQLPL 171 >gi|312869960|ref|ZP_07730099.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris PB013-T2-3] gi|311094545|gb|EFQ52850.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris PB013-T2-3] Length = 949 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 3/92 (3%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG DRII+IG V + D F+ + P K ++L GI D Sbjct: 21 VVDLETTGTSVNHGDRIIQIGCVLVQDGQVI-NHFETKVNP-REKIPRAVVQLTGIQDRD 78 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 ++ P F + + N F Sbjct: 79 VRKAPLFEDVAGTIYSLLTGTTFVAHNVNFDF 110 >gi|260062630|ref|YP_003195710.1| DNA polymerase III subunit epsilon [Robiginitalea biformata HTCC2501] gi|88784197|gb|EAR15367.1| DNA polymerase III, epsilon subunit [Robiginitalea biformata HTCC2501] Length = 222 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALK 61 +V D ETTG ++DRI+ IGA+ + + + + F+ + + Sbjct: 34 FVVLDTETTGFSPQHDRILSIGALRVSQGRIRVKESLERFVKQERFDRASVPIH 87 >gi|328957363|ref|YP_004374749.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4] gi|328673687|gb|AEB29733.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4] Length = 940 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 7/176 (3%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V DIETTG + DR+I+ G V + D +R F + P + L G+++ Sbjct: 10 YAVVDIETTGGNVTSGDRMIQFGCVLIEDDKIVHR-FATTVNP-LTSIPKQIEHLTGLSN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P F + + ++ + +AHN +FD F++ ELQR L I Sbjct: 68 KSVALAPYFEDVAATIYNLLED--CIIVAHNIQFDYIFLSGELQRCGMPALKNKGIDTVE 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 S LN L ++ I + H A D+ + +++++++ ++ Sbjct: 126 LAQILLPTESSYRLNDLVSKFNIEH--TNPHQADSDAAVTAELFLELKNKLKELPL 179 >gi|291513942|emb|CBK63152.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Alistipes shahii WAL 8301] Length = 255 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 75/200 (37%), Gaps = 9/200 (4%) Query: 2 IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 ++ N R I+F D+ETTG+D+ DRI+EI V+++ D + +T L P G EA Sbjct: 1 MKLNLKRPIIFFDLETTGVDTARDRIVEISMVKVMPDGEEITKT--RRLNP-GMHIPEEA 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGITD+ ++D P+F+ + F + N + L+ Sbjct: 58 SAIHGITDDDVRDCPTFAQVARSLEQFIRGCDFGGFNSNRFDLPVLVEEFLRAGVDVDFK 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ID +I + ++ H A D+ +V + Sbjct: 118 RRKFIDVQNIFHK----KEQRTLVAAYKFYCDKDLEEAHSAEADTKATYEVLKAQLDRYD 173 Query: 180 QINFGFKTNEDRFFKEEKKT 199 + + + E Sbjct: 174 DLENDIDKLAEYSCRAESAD 193 >gi|262279766|ref|ZP_06057551.1| ribonuclease T [Acinetobacter calcoaceticus RUH2202] gi|262260117|gb|EEY78850.1| ribonuclease T [Acinetobacter calcoaceticus RUH2202] Length = 220 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 67/191 (35%), Gaps = 16/191 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54 +V D+ET G +++ D ++EI + ++ F + P + Sbjct: 24 VVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P + ++ +E + +A + HNA FD+GF+ A + R + Sbjct: 84 IDPFNPMRMAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFVQAAIARTS 143 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P + + + C + GI + H AL D+ ++++ Sbjct: 144 TKNQNPFHSFSVMDTVTLSAVMFGQTVLAKACIQAGIEFDGKEAHSALYDTQKTAELFCY 203 Query: 174 MMVGGSQINFG 184 ++ S Sbjct: 204 ILNKLSPYLLD 214 >gi|223984468|ref|ZP_03634601.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM 12042] gi|223963539|gb|EEF67918.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM 12042] Length = 1451 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 4/169 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V+D+ETTGL D IIE GAV +++ + T Q+F+ P + + IT+E Sbjct: 399 YVVYDLETTGLSCSFDHIIEFGAV-VIERGEIKETKQLFVKPP-VPINAFISEKTNITNE 456 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + F+ + E DF + +AHNA FD F+N EL+RI PL + Sbjct: 457 DVAQAKPFAEVAQELVDFIGD--KVLVAHNATFDYNFLNEELKRIGMAPLTNPVVDTLDL 514 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L ++ + Y IT H A D+ +L+ V++ M+ Sbjct: 515 ARALHSDRRSYRLGNIARHYRITYDEEVAHRADYDADVLASVFMLMIKE 563 >gi|160944143|ref|ZP_02091373.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii M21/2] gi|158444819|gb|EDP21823.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii M21/2] Length = 1417 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 70/195 (35%), Gaps = 6/195 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD ETTGLD + + EIGAV + + F F+ P G+ +P+ +L GIT+E + Sbjct: 399 VFDTETTGLDPGVEYLTEIGAVIIRNGEVV-EEFDTFVKP-GKPITPKITELTGITNEMV 456 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D PS F + + HN + + L+P+ I Sbjct: 457 ADAPSEKEALEAFLA--FAGDRILVGHNVHAFDMRFLRAAAKRSGIKLEPTYIDTLTMAQ 514 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 ++ K + H A DS L ++ M+ ++ + + Sbjct: 515 TMYPGLHNYKQGTINKHLELP--AYEAHRACEDSAALGRIFCVMLNDLAEKEVTKVSEIN 572 Query: 191 RFFKEEKKTVPNISL 205 ++ + Sbjct: 573 TGLGGNREVLKKKYY 587 >gi|260102980|ref|ZP_05753217.1| DNA polymerase III [Lactobacillus helveticus DSM 20075] gi|260083211|gb|EEW67331.1| DNA polymerase III [Lactobacillus helveticus DSM 20075] gi|328464560|gb|EGF35931.1| DNA polymerase III [Lactobacillus helveticus MTCC 5463] Length = 317 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 8/201 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70 D+ETTGL DRI E+G V++ + ++ + + P K KL+GIT+E L Sbjct: 36 LDVETTGLSPFRDRITELGGVKVRNGQIVDQ-YTNLVKFPKNNKVPAFITKLNGITEEQL 94 Query: 71 KDKPSF-SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ EF +F + N + +L + P+ + +D L + Sbjct: 95 TNEGIPAEQAIKEFREFIGDDTIIGYNVNFDLN---FLYDLSQKYNLPVLNNDYVDVLRL 151 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 AR +P N L +R GI +H L DS VY ++ + Sbjct: 152 ARVYYPRQHNRLIDCMQRAGIA--QVEQHHGLADSLDTIKVYNDFNQHFTEDLLEQAIGK 209 Query: 190 DRFFKEEKKTVPNISLLKRDK 210 + V L R+ Sbjct: 210 IKNVDLTGDEVDYYQLGFRNP 230 >gi|298209279|ref|YP_003717458.1| putative DNA polymerase III epsilon chain [Croceibacter atlanticus HTCC2559] gi|83849206|gb|EAP87075.1| putative DNA polymerase III epsilon chain [Croceibacter atlanticus HTCC2559] Length = 258 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 8/172 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG++ D+I+EI +++ + +K ++T+ + P R E +HGITDE Sbjct: 11 FFDLETTGVNVAKDKIVEISILKVFPNGNKESKTW--LVNPE-RPIPAETTAVHGITDEK 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P+F + S ++ + N L+ + S +D +I Sbjct: 68 VANEPTFKELSSSIYEMIKGCDLGGFNSNRFDIPLLAEELLRADIDFDMKNSSAVDVQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + ++ H A D+ +V + + Sbjct: 128 FHK----MEQRTLVAAYKFYCDKDLTDAHSAAADTEATYEVLKAQLDKYPDL 175 >gi|304384907|ref|ZP_07367253.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus acidilactici DSM 20284] gi|304329101|gb|EFL96321.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus acidilactici DSM 20284] Length = 927 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 7/180 (3%) Query: 5 NKMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K R V D+ETTG + RII+IG + T T+Q + P +L Sbjct: 2 KKTRYAVVDLETTGTGSVEESRIIQIGCAFIEGDQIT-ETYQTKINPQ-MTIPKRISRLT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD+ ++ P F+ + + + ++AHN FD F+N EL R LD I Sbjct: 60 GITDQQVRQAPKFADVADKIYQKLAG--TVFVAHNVNFDFPFLNRELVRSGYPELDLKAI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L I H A D+ + +++K+ S++ Sbjct: 118 DTVTLSQVLFSRTRGYRLRDLTNYLHIEH--DDPHSADSDAVATAHLFLKIKAALSELPI 175 >gi|270290279|ref|ZP_06196504.1| DnaQ family exonuclease/DinG family helicase [Pediococcus acidilactici 7_4] gi|270281060|gb|EFA26893.1| DnaQ family exonuclease/DinG family helicase [Pediococcus acidilactici 7_4] Length = 927 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 7/180 (3%) Query: 5 NKMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K R V D+ETTG + RII+IG + T T+Q + P +L Sbjct: 2 KKTRYAVVDLETTGTGSVEESRIIQIGCAFIEGDQIT-ETYQTKINPQ-MTIPKRISRLT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD+ ++ P F+ + + + ++AHN FD F+N EL R LD I Sbjct: 60 GITDQQVRQAPKFADVADKIYQKLAG--TVFVAHNVNFDFPFLNRELVRSGYPELDLKAI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L I H A D+ + +++K+ S++ Sbjct: 118 DTVTLSQVLFSRTRGYRLRDLTNYLHIEH--DDPHSADSDAVATAHLFLKIKAALSELPI 175 >gi|291287661|ref|YP_003504477.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM 12809] gi|290884821|gb|ADD68521.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM 12809] Length = 228 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 5/170 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ETTGLD + RII + AV++ ++ + F+ P + E+++ H ITDE + Sbjct: 47 VIDTETTGLDLNDARIINVAAVKVQNFKII-DFYNSFINPET-EIPKESIQWHNITDEMV 104 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP+ + +F +F ++ + + H+ FD+ IN E+ ++ + + L + Sbjct: 105 ADKPTAGEVLPDFLNFVDD--SIIVGHHVTFDIKMINKEMMDSFSCQINNNWLDTMLIYS 162 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ +H AL D+ ++V+ KM++ S+ Sbjct: 163 HAIIKKDERYSLDYLLDL-YNVTCNGRHTALGDALATAEVFTKMIMQASR 211 >gi|188995649|ref|YP_001929901.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis ATCC 33277] gi|188595329|dbj|BAG34304.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis ATCC 33277] Length = 259 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 8/171 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTG+D DRI+EI ++++ D S+ +T + P R PE+ +HGITDE Sbjct: 10 IFFDLETTGVDLVRDRIVEISILKVMPDGSEECKT--RRINPE-RSIPPESTAIHGITDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P F S+ + + + L+ L ++ID + Sbjct: 67 DVKDCPPFRSVAKSLAQWIEGCDLAGFNSTRFDVPMLVEEFLRAGVDIDLRHRKLIDVQT 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I + P R+ + + H A D+ DV+ + Sbjct: 127 IFHKMEP----RTLEAATRFYCNRTLENAHSAEADTRATYDVFKAQLDRYE 173 >gi|313891131|ref|ZP_07824750.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pseudoporcinus SPIN 20026] gi|313120494|gb|EFR43614.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pseudoporcinus SPIN 20026] Length = 1466 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 76/172 (44%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD Sbjct: 428 YVVFDVETTGLSAINNDLIQIAASKMYKGNII-EQFDEFINP-GHPLSTFTTELTGITDN 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + F DF QN +AHNA FDVGF+NA +R ++ I Sbjct: 486 HLIGAKPILKVLEAFQDFC--QNTILVAHNASFDVGFMNANYERHQLPLINQPVIDTLEF 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 544 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKEARE 593 >gi|225012673|ref|ZP_03703108.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium MS024-2A] gi|225003206|gb|EEG41181.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium MS024-2A] Length = 257 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 75/201 (37%), Gaps = 8/201 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG D DRI+EI ++L D + + ++ P + EA +HGITDE Sbjct: 11 FFDLETTGTDISKDRIVEIAVLKLHPDGLQEKKEWRT--NPE-QPIPAEASAVHGITDEM 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + +P+F + +E + F + + + L+ ++ +D +I Sbjct: 68 VASEPTFKELSNEIYSFIKGCDLAGYNSDRFDIPLLVEELLRAEVDFDFKNNKTVDVQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + R+ H A D+ DV I + ++ Sbjct: 128 FHK----MEQRTLTAALRFYCNEELTDAHSAHADTKATHDVLIAQLDRYQELEPNIAFLN 183 Query: 190 DRFFKEEKKTVPNISLLKRDK 210 + + + + +D+ Sbjct: 184 EFSSRRKTVDFAGFVVYNKDE 204 >gi|291287762|ref|YP_003504578.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM 12809] gi|290884922|gb|ADD68622.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM 12809] Length = 205 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 7/174 (4%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 VFD ETTG+ K R++EIGAV++ + +F + P A +HGI+ Sbjct: 13 VFDTETTGMSPDKGARLLEIGAVKVKPGLVLDLQDSFCTLINPK-APIPYNAYSVHGIST 71 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + DKP + F+ +N AHNA+FD F++ + Sbjct: 72 AMVADKPEIKDVLPGFFS--FTENTIIAAHNARFDCSFVSHHSAECCIVNPMTKIVDTVK 129 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L +L + + I + + + + + + ++ Sbjct: 130 LAKSAHSGLKSYSLGNLIHYFSMDIPLPDTYR-HRALYDAAHTALLLTICLKKL 182 >gi|31747869|gb|AAN10194.1| DNA polymerase III epsilon subunit [Candidatus Fritschea bemisiae] Length = 249 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD E+TGLD + DRIIEI A++ + + + + P E ++H ITDE Sbjct: 9 FVCFDCESTGLDPEKDRIIEIAAIKFSFNAII-DSIEDLINPET-LIPQETTRIHHITDE 66 Query: 69 FLKDKPSFSSIFSEFWDFF 87 ++ P + + + DF Sbjct: 67 MVQKSPKINEVIQSYLDFI 85 >gi|56460902|ref|YP_156183.1| ribonuclease T [Idiomarina loihiensis L2TR] gi|56179912|gb|AAV82634.1| RNase T, degrades tRNA [Idiomarina loihiensis L2TR] Length = 215 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL--LDYSKTN--RTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L D + + P G A+ +G Sbjct: 19 VVVDVETAGFNAKTDALLEIAAVLLDFDDDGILKPVDSVHYHVKPFEGANIEQAAIDFNG 78 Query: 65 ITDE--------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + Q + + HN+ FD GF+ A +R N Sbjct: 79 IDPHCPLRGAVEEGEALRELFKPIRKAQKAAGCQRSVLVGHNSNFDHGFMMAAAERANLK 138 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + + L C+ GI + H AL D+ +++Y M+ Sbjct: 139 RNPFHPFVSFDTTSLAAMTLGQTVLIKACQAAGIEFDSKQAHSALYDTERTAELYCWMIN 198 Query: 177 GGSQIN 182 ++ Sbjct: 199 RWKELG 204 >gi|315648491|ref|ZP_07901590.1| hypothetical protein PVOR_24689 [Paenibacillus vortex V453] gi|315276185|gb|EFU39531.1| hypothetical protein PVOR_24689 [Paenibacillus vortex V453] Length = 246 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTG + + D I+ GAV ++ +F + + +G P +L GIT Sbjct: 62 VVFDLETTGFNHQHGDEILSFGAVRVIGEQVIEQESFHMIVN-SGSPVPPFITELTGITQ 120 Query: 68 EFLKDKPSFSSIFSEFWDFF 87 + P +F F Sbjct: 121 HMVDAAPPLMEGLHDFMAFV 140 >gi|304382373|ref|ZP_07364875.1| DNA polymerase III epsilon chain [Prevotella marshii DSM 16973] gi|304336490|gb|EFM02724.1| DNA polymerase III epsilon chain [Prevotella marshii DSM 16973] Length = 284 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 77/205 (37%), Gaps = 7/205 (3%) Query: 2 IRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ N R IVFD+ETTGLD NDRII++ +++L R +F+ P R E + Sbjct: 1 MKLNLTRPLIVFDLETTGLDLVNDRIIQLSYIKVLPDGTELRK-NIFINPE-RSIPKEVV 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GITD+ +K+ P+F + + + F + N L+ Sbjct: 59 ELTGITDDDVKEAPTFKEMAPDLNNEFRGCDFAGYNSNHFDIPMLAEEFLRAGIDFDFSK 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY---IKMMVG 177 R+ID +I + + H A D+ V ++M Sbjct: 119 CRLIDAQTIFHKMERRHLAAAYKFY-CGRKMEEDFTAHRADEDTEATYRVLQGELEMYQP 177 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPN 202 G Q + D E N Sbjct: 178 GKQEEAERQLENDMDVLAEFSKNNN 202 >gi|262372115|ref|ZP_06065394.1| ribonuclease T [Acinetobacter junii SH205] gi|262312140|gb|EEY93225.1| ribonuclease T [Acinetobacter junii SH205] Length = 221 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 66/196 (33%), Gaps = 16/196 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54 +V D+ET G +S+ D ++EI + ++ F + P + Sbjct: 25 VVVDVETAGFNSQTDALLEIACIPIVYDQQGQFIPGPAFHAHINPFEGANLDRRSLDFIG 84 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P + ++ +E + +A + HNA FD+GF+ A + R Sbjct: 85 IDPFNPMRVAMAEDERGALRRIFKSLNEVRKAQHCTHAVLVGHNAHFDLGFLQAAIARSG 144 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P + + C + GI + H AL D+ ++++ Sbjct: 145 TKNQNPFHSFSVFDTVTLSAVMFGQTVLARACIQAGIEFDGKEAHSALYDTQKTAELFCY 204 Query: 174 MMVGGSQINFGFKTNE 189 ++ S E Sbjct: 205 ILNKLSPHLLDSLVTE 220 >gi|311694144|gb|ADP97017.1| DNA polymerase III, epsilon subunit [marine bacterium HP15] Length = 235 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 4/174 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D+ETTGL+ D +I IGAV + F + L E + +HGI Sbjct: 40 RLIVLDLETTGLNPSKDEVIAIGAVAIRGGIIHLGDQFDLILRRPELDI-RETVLIHGIG 98 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E L ++ N + Q P + D Sbjct: 99 PEALTQGHEIEDALLYLLEWMNGDPILAYHSAFDQKFLEKTLKAQLGYTQPHTWMDVADL 158 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + + L++ +G+ +H A D+ +++ + + Sbjct: 159 MPAFFPNTKTGGKGLDNWADYFGLE--VSERHHAASDALATAELTLVALNKARS 210 >gi|86130881|ref|ZP_01049480.1| exonuclease [Dokdonia donghaensis MED134] gi|85818292|gb|EAQ39452.1| exonuclease [Dokdonia donghaensis MED134] Length = 229 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALK 61 R +VFD ETTGLD K DRI+ +G V ++ + T ++FL + + Sbjct: 45 RFVVFDTETTGLDYKKDRILSLGGVAVVGNQVIVADTLELFLKQDFYNPDSAQIH 99 >gi|313206047|ref|YP_004045224.1| exonuclease rnase t and DNA polymerase iii [Riemerella anatipestifer DSM 15868] gi|312445363|gb|ADQ81718.1| Exonuclease RNase T and DNA polymerase III [Riemerella anatipestifer DSM 15868] Length = 254 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 6/186 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 +FD+ETTG + DRI+EI + ++ + T + P A +HGI+DE + Sbjct: 11 IFDLETTGTNISKDRIVEI-CILKVNTDASRETKTWLVNPEMH-IPAFATAVHGISDEDV 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD P+ I + + + + N L+ L +++D I Sbjct: 69 KDAPTLKEIAPKIMEMISGADLGGFNSNRFDVPLLAEEMLRAGVDFDLSKMKLVDAQVIF 128 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 + P S ++ + H A D+ +V + ++ + Sbjct: 129 HKMEP----RNLSAAYQFYCNKTLEDAHSAEADTLATFEVLDAQVGKYEELPKDINGLSE 184 Query: 191 RFFKEE 196 + ++ Sbjct: 185 FSYHQK 190 >gi|322489448|emb|CBZ24706.1| mitochondrial DNA polymerase I protein B,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 1429 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 6/156 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FDIETTGL+ D I+E+ + D + N TF + P R +P + +H IT+ Sbjct: 763 RIVFFDIETTGLNPSTDAIVEVA---MFDPIE-NTTFHTLVNPQ-RSITPRTVGIHHITN 817 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++D P+ + + + + + N Sbjct: 818 AMVRDAPTVDVVAKSIGQYLRL-DKASYNPHEILVLVGHNVFSVDEPMLRRALECHAPEC 876 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + S LN+ + R + L+D Sbjct: 877 QLDGILFCDSLALLNAHRSDLRWRMRIRRANQPLMD 912 >gi|294790489|ref|ZP_06755647.1| DNA polymerase III domain protein [Scardovia inopinata F0304] gi|294458386|gb|EFG26739.1| DNA polymerase III domain protein [Scardovia inopinata F0304] Length = 241 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 7/197 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+FD ETTG + + RIIEIG + L +Q + P G + + L GI D Sbjct: 44 IIFDTETTG-NFSDQRIIEIGGLFLRKGVPIGE-WQQLINP-GVNITHFSQHLSGINDAM 100 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P S++ F + +N FD+ +N E R+ + S +ID + I Sbjct: 101 IANEPPASTVIPWFINSIQNLTIV--GYNVNFDINALNEEANRLGMSGISVSNVIDVIDI 158 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 AR+ P+S + + +S KH AL D+ L + KM + + Sbjct: 159 ARQSLPNSPSYSLEQVAIL-LNVSDTEKHRALDDAILTWKCWQKM-ESMNNKQIILSQEQ 216 Query: 190 DRFFKEEKKTVPNISLL 206 + + N Sbjct: 217 VTTVSQRNSKIRNDKNK 233 >gi|291531551|emb|CBK97136.1| exonuclease, DNA polymerase III, epsilon subunit family [Eubacterium siraeum 70/3] Length = 361 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 81/239 (33%), Gaps = 19/239 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTGL ND IIEIGA+ + D F + Sbjct: 11 IVDIETTGLSPDNDNIIEIGALRVRDNKIVAD-FSQLIK---ASKPLSKTISQITGITDD 66 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + + N + HN FD FI+ + + + DTL+ Sbjct: 67 MLADAKELDDTLSDFLRFVDNDTVVGHNIAFDANFIS--KKCVAYGLDFKNDTYDTLAAC 124 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 ++++P + L + + GI S H AL D + + + S + K + Sbjct: 125 KQEYPDVSHKLEDMIIQLGIKDSGI-HHRALADCYHTHSLMTA-LKNHSALVLEIKPPKQ 182 Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-----------LGKNAIWD 238 R K + + + +T+EEL ++ + + NAIW Sbjct: 183 RVLNPITKGLQTLHGILIGITCDDILTQEELLRLEEWMNNNEQLAGNYPYDIINNAIWK 241 >gi|210634765|ref|ZP_03298293.1| hypothetical protein COLSTE_02220 [Collinsella stercoris DSM 13279] gi|210158705|gb|EEA89676.1| hypothetical protein COLSTE_02220 [Collinsella stercoris DSM 13279] Length = 975 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 65/176 (36%), Gaps = 10/176 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGL + + +IEI A L R F F+ P+ E +L IT+ Sbjct: 48 VVLDTETTGLSHRENELIEIAAARLRGREVVER-FDTFIKPH-ALIPAEITELTSITNAD 105 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + PS + DF A IAHNA FD GFI A + + + Sbjct: 106 VAHAPSAEEAVARLADFVGG--APVIAHNAAFDRGFIEAVSGGAEVTDIWIDSLALSRIA 163 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 R + L G++ H A D L V+ ++ + G Sbjct: 164 LPRLSSHKLASMAELFGCSGVS------HRANADVEALCGVWRILLCALDDLPSGL 213 >gi|167854538|ref|ZP_02477319.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Haemophilus parasuis 29755] gi|219872178|ref|YP_002476553.1| ribonuclease T [Haemophilus parasuis SH0165] gi|167854293|gb|EDS25526.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Haemophilus parasuis 29755] gi|219692382|gb|ACL33605.1| ribonuclease T [Haemophilus parasuis SH0165] Length = 216 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 72/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEA----- 59 +V D+ET GL+++ D ++EI A+ ++ D + F + P +PEA Sbjct: 22 VVVDVETGGLNAQTDALLEIAAITLKMDDDGYLHLDEKFHRHVKPFENANINPEALKVNG 81 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116 + + + + + + +F + +AHNA FD F+ A ++RIN Sbjct: 82 IDVDNAERGAVPEDIAITEMFKMVRKAVKDNGCQRAVIVAHNATFDQAFLQAAVKRINTK 141 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I + H AL D+ ++++ M+ Sbjct: 142 RDPFHPFAMFDTATLAGFMYGQTVLVKACQMAQIPFDGKQAHSALYDTERTAELFCAMVN 201 Query: 177 GGSQIN 182 + Sbjct: 202 KLKDLG 207 >gi|72161118|ref|YP_288775.1| exonuclease [Thermobifida fusca YX] gi|71914850|gb|AAZ54752.1| exonuclease [Thermobifida fusca YX] Length = 516 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 57/174 (32%), Gaps = 8/174 (4%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTGL+ K R+ EI V + + + P +S HGITD Sbjct: 21 YAVLDLETTGLNPKRGARVCEIAVVRMRGDGTVLDEYSTLVNPG---SSIRNSAFHGITD 77 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++K PSF + + + + K D + Sbjct: 78 TWVKTAPSFDQVAGDLLAYLDGAIVVG----HKLDFEEKFLAAEFARLGVPLTGIPGLCT 133 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +A R + ++H AL D+ L+ V +++ Q Sbjct: 134 LVAARYQLDRYGYRLAHLHHLLTGRWPTAEHSALGDARSLAAVLTELINAAPQP 187 >gi|315022360|gb|EFT35388.1| DNA Pol III Epsilon Chain [Riemerella anatipestifer RA-YM] gi|325336512|gb|ADZ12786.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases [Riemerella anatipestifer RA-GD] Length = 254 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 6/186 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 +FD+ETTG + DRI+EI + ++ + T + P A +HGI+DE + Sbjct: 11 IFDLETTGTNISKDRIVEI-CILKVNPDASRETKTWLVNPEMH-IPAFATAVHGISDEDV 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD P+ I + + + + N L+ L +++D I Sbjct: 69 KDAPTLKEIAPKIMEMISGADLGGFNSNRFDVPLLAEEMLRAGVDFDLSKMKLVDAQVIF 128 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 + P S ++ + H A D+ +V + ++ + Sbjct: 129 HKMEP----RNLSAAYQFYCNKTLEDAHSAEADTLATFEVLDAQVGKYEELPKDINGLSE 184 Query: 191 RFFKEE 196 + ++ Sbjct: 185 FSYHQK 190 >gi|288554371|ref|YP_003426306.1| hypothetical protein BpOF4_06780 [Bacillus pseudofirmus OF4] gi|288545531|gb|ADC49414.1| hypothetical protein BpOF4_06780 [Bacillus pseudofirmus OF4] Length = 220 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 3/170 (1%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +FD ETTG DR+IEI V + +TFQ F+ P+ R+ + L GI+ E Sbjct: 30 IFDTETTGFAINGADRMIEIAGVRVAGLEVQEQTFQTFVNPD-REIPEKITSLTGISGEK 88 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD PS F+ F + +++ + + + +K D ++DTL + Sbjct: 89 VKDAPSSLEALERFFQFNEDIDSKLWVGHYVSFDMMVVKKELLRHKYTYDTPLVVDTLDL 148 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +PS + +H AL D+ + ++ ++M Sbjct: 149 IGYLNPSRDMRDLEVYALQ-FGTLVYERHQALGDAMTTAHLFCELMRHLE 197 >gi|269796817|ref|YP_003316272.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease [Sanguibacter keddieii DSM 10542] gi|269099002|gb|ACZ23438.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Sanguibacter keddieii DSM 10542] Length = 611 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 74/202 (36%), Gaps = 7/202 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ET+GL + R++++ ++ R++ L P P + +HG+T E Sbjct: 22 YAVVDVETSGLSPTHHRVLQVAVTQVEPDGALGRSWSSLLDPG---VDPGPVHVHGLTRE 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + + + + +AHNA+FD GF+ AE R R+ Sbjct: 79 RLAGAPQYQDVAGTLDELVRD--RVLVAHNARFDWGFLAAESDRARAPLSVDRRLCTLAL 136 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R P S L ++ +G+ H A D +L +V + ++ Sbjct: 137 SRRLDLPVSDLRLATVAAHWGVQQRRA--HDAEDDVRVLVEVLRHSLAAADRLGMTLPVA 194 Query: 189 EDRFFKEEKKTVPNISLLKRDK 210 + + + + Sbjct: 195 ACGPGEPSARDGGPVRPSPSPR 216 >gi|77405656|ref|ZP_00782744.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae H36B] gi|77175729|gb|EAO78510.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae H36B] Length = 1468 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 66/172 (38%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P + + Sbjct: 430 YVVFDVETTGLSAANNDLIQIAASKMFKGNII-EQFDEFIDPGHPLSDFTTELTGITDNH 488 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 KP + Q +AHNA FDVGF+NA +R N + I Sbjct: 489 VRGSKPILQVLQEFQN---FCQGTVLVAHNATFDVGFMNANYERHNLPLITQPVIDTLEF 545 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ + + H H A D+ + + + Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH--HHMANYDAEATGRLLFIFLKEARE 595 >gi|76787214|ref|YP_330464.1| DNA polymerase III PolC [Streptococcus agalactiae A909] gi|76562271|gb|ABA44855.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae A909] Length = 1468 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 66/172 (38%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P + + Sbjct: 430 YVVFDVETTGLSAANNDLIQIAASKMFKGNII-EQFDEFIDPGHPLSDFTTELTGITDNH 488 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 KP + Q +AHNA FDVGF+NA +R N + I Sbjct: 489 VRGSKPILQVLQEFQN---FCQGTVLVAHNATFDVGFMNANYERHNLPLITQPVIDTLEF 545 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ + + H H A D+ + + + Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH--HHMANYDAEATGRLLFIFLKEARE 595 >gi|119026003|ref|YP_909848.1| putative DNA polymerase III epsilon subunit [Bifidobacterium adolescentis ATCC 15703] gi|118765587|dbj|BAF39766.1| putative DNA polymerase III epsilon subunit [Bifidobacterium adolescentis ATCC 15703] Length = 207 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 66/174 (37%), Gaps = 9/174 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D ETTGL K DR IEIG V + + + S A +H IT Sbjct: 6 YAVVDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLI---HVDRSVGASWVHHITA 62 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L P F I E D ++AHN FD F+ AE + + Sbjct: 63 RELLHAPDFEGIAHELRDLLAG--RVFVAHNVSFDSRFLLAEYS-RMGASIPVDQSTMLC 119 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++ + R L C+ +GI + H AL D+H + + +++ + Sbjct: 120 TMKLSRSLIGRGKLADCCEYFGIA--NEDAHSALSDAHATAILLGRLLEADPKW 171 >gi|295100646|emb|CBK98191.1| DNA polymerase III catalytic subunit, PolC type [Faecalibacterium prausnitzii L2-6] Length = 1417 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 10/221 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD ETTGLD + + EIGAV + + F F+ P G+ + + +L GIT+E + Sbjct: 399 VFDTETTGLDPGVEYLTEIGAVIVRNGEVV-EEFDTFVKP-GKPITSKITELTGITNEMV 456 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D PS + F DF + + HNA + + +P+ I Sbjct: 457 ADAPSEAEALKAFLDFVDG--RILVGHNAHSFDIRFLRAAAKRSGIEFEPTYIDTLTMAQ 514 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF----GFK 186 ++ K + H A DS L ++ M+ + G Sbjct: 515 AMYPGLHNYKQGTINKHLELP--AYEAHRACEDSAALGRIFCVMLKDLEEKQVTAVSGIN 572 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 T + KK ++ +L R + + K + H Sbjct: 573 TGLGGNREVLKKKYYHLIILVRSQMGLKNLYKIVSEAHVNY 613 >gi|77409408|ref|ZP_00786106.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae COH1] gi|77171990|gb|EAO75161.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae COH1] Length = 1468 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 66/172 (38%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P + + Sbjct: 430 YVVFDVETTGLSAANNDLIQIAASKMFKGNII-EQFDEFIDPGHPLSDFTTELTGITDNH 488 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 KP + Q +AHNA FDVGF+NA +R N + I Sbjct: 489 VRGSKPILQVLQEFQN---FCQGTVLVAHNATFDVGFMNANYERHNLPLITQPVIDTLEF 545 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ + + H H A D+ + + + Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH--HHMANYDAEATGRLLFIFLKEARE 595 >gi|320449814|ref|YP_004201910.1| DNA polymerase III subunit epsilon [Thermus scotoductus SA-01] gi|320149983|gb|ADW21361.1| DNA polymerase III, subunit epsilon [Thermus scotoductus SA-01] Length = 637 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 4/96 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTGLD + D II +GAV +L + F+ + P GR + ++HG+T E Sbjct: 455 AFDLETTGLDPEKDAIIALGAVHILGKTVLRHEVFEALVNP-GRPIPKASTEVHGLTWEM 513 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 LK+KP + F ++ +AHN FD+ F Sbjct: 514 LKEKPKLEEVLPGF--RLFLEDTVLLAHNGAFDMAF 547 >gi|305666543|ref|YP_003862830.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170] gi|88708810|gb|EAR01045.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170] Length = 222 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLC 49 R IVFD ETTGLD NDRI+ IGA+ + + +++L Sbjct: 33 RFIVFDTETTGLDIVNDRILSIGAISVFSGKLDIGDSLEIYLK 75 >gi|205373870|ref|ZP_03226672.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus coahuilensis m4-4] Length = 194 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 5/154 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D+ETTG K DRII++ A + F FL PN + +L GIT Sbjct: 5 RYVVVDLETTGNSPKRGDRIIQLSACLIEHGEIV-EQFTSFLNPN-KTIPIFIEELTGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D P+F I + N+ + ++AHN FD+ F+ EL + Sbjct: 63 QPMVDDAPNFEQIAPKLISMLND--SVFVAHNVTFDLSFLQWELHAAGYKTFQGPILDTV 120 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 S+ L L +++ + + + Sbjct: 121 ELAKICFPTSNSYKLGDLSEKFNLLHERPHQADS 154 >gi|293189820|ref|ZP_06608534.1| putative DNA polymerase III, epsilon subunit [Actinomyces odontolyticus F0309] gi|292821235|gb|EFF80180.1| putative DNA polymerase III, epsilon subunit [Actinomyces odontolyticus F0309] Length = 540 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 6/167 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGL + I EIGAV + D + + F + P R P L GIT Sbjct: 19 WVVVDLETTGLGA-GAEITEIGAVRIRDGAVVDE-FSSLVKP-SRPIPPFITSLTGITPA 75 Query: 69 FLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + D +S+ F ++ + +AHNA FDVGF+ + + + Sbjct: 76 MVADADPIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPRVRVVDT 135 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + +H AL D+ +++ + Sbjct: 136 LALARLALPRPLVRNHKLGTVASYFGTATVPEHRALGDARATAEILL 182 >gi|21684660|gb|AAL87524.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps] Length = 201 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 1/164 (0%) Query: 19 LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSS 78 L + R+ E+G VE+ T F ++ P ++ + A +HG+ DEFL +P+F + Sbjct: 1 LSPRYHRLAEVGCVEIAGGRITGNYFHSYINP-CQRMTRGAQAVHGLKDEFLATQPTFGA 59 Query: 79 IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138 I F + + +IDT+ ++ R Sbjct: 60 IAQRLLYFLCGAVLVGHNLTFDLNFLDAGLVSAGFMPAARYCAGVIDTMRHLAQRGSRRR 119 Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 L+ LC R G+ R++HGAL D+ LL++ ++ + Sbjct: 120 FSLDDLCDRLGVRRGERARHGALEDAVLLAEAFVAARRTHPSLG 163 >gi|323342398|ref|ZP_08082630.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463510|gb|EFY08704.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414] Length = 200 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 10/182 (5%) Query: 4 KNKMRKI----VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 +N ++ + V D+ETTG +K + I E+ A++ +Y + F + P+ Sbjct: 6 ENLLKFVPNFTVIDLETTGRSNKFEDITELSAIKYRNYKQV-DAFSTLVKPDNSILP-FV 63 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 ++L GIT+E + D P + +F DF + HN FD G + + Sbjct: 64 VELTGITEEMVSDAPKIDQVIKQFVDFIGT--DVILGHNVMFDYGLVYDAYLATVGLRMH 121 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + S + L +LC + + H D ++VYIKM Sbjct: 122 NDYVDTLRVSRLLNKDSKNHKLETLCAYF--DVERLVGHRGSEDCLQTAEVYIKMKDKYK 179 Query: 180 QI 181 ++ Sbjct: 180 RL 181 >gi|90409038|ref|ZP_01217165.1| ribonuclease T [Psychromonas sp. CNPT3] gi|90309845|gb|EAS38003.1| ribonuclease T [Psychromonas sp. CNPT3] Length = 204 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELL--DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ DIET+GL+S+ D I+EI A+ + Y + +T + P G P+AL+ G Sbjct: 15 VIIDIETSGLNSQTDAILEIAAIFPAMDEQGYLYSAQTIHFNVQPFEGANMDPKALEFTG 74 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + + +AHNA FD GFIN +R N Sbjct: 75 IDPFNPLRGAIDEKEVLTEIFKLVRKHQKINDCNRSILVAHNAAFDQGFINKASERCNFK 134 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + + + L C++ I ++ H AL D+ + +D++ M+ Sbjct: 135 RIPFHPFVCFDTASMAGLMLGQTVLAKACEQANIDYNNEEAHSALYDTQVTADLFFYMVN 194 Query: 177 GGSQIN 182 + Sbjct: 195 KLKALG 200 >gi|323467153|gb|ADX70840.1| DNA polymerase III [Lactobacillus helveticus H10] Length = 317 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 8/201 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70 DIETTGL DRI E+G V++ + ++ + + P K KL+GIT+E L Sbjct: 36 LDIETTGLSPFRDRITELGGVKVRNGQIVDQ-YTNLVKFPKNNKVPAFITKLNGITEEQL 94 Query: 71 KDKPSF-SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ EF +F + N + +L + P+ + +D L + Sbjct: 95 TNEGIPAEQAIKEFREFIGDDTIIGYNVNFDLN---FLYDLSQKYNLPVLNNDYVDVLRL 151 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 A+ +P N L +R GI +H L DS VY ++ + Sbjct: 152 AKVYYPRQHNRLIDCMQRAGIA--QVEQHHGLADSLDTIKVYNDFNQHFTEDLLEQAIGK 209 Query: 190 DRFFKEEKKTVPNISLLKRDK 210 + V L R+ Sbjct: 210 IKNVDLTGDEVDYYQLGFRNP 230 >gi|269216510|ref|ZP_06160364.1| putative ATP-dependent helicase DinG [Slackia exigua ATCC 700122] gi|269130039|gb|EEZ61121.1| putative ATP-dependent helicase DinG [Slackia exigua ATCC 700122] Length = 1045 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 69/178 (38%), Gaps = 9/178 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG +D + +I A + F F+ P G+ E +L I DE Sbjct: 58 VVLDTETTGFSQNHDELTQIAAARMKQGRIV-EWFVTFVNP-GKPIPEEVARLTDIHDED 115 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D PS + F + AHNA FD GF + PL + ID+L + Sbjct: 116 VADAPSPDDARIQLAAFVGDSCIV--AHNAAFDKGFCT---KSQGGAPLSDNLWIDSLDL 170 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 AR P ++ L + S H A D L Y M+ +++ + Sbjct: 171 ARIALPRLKSHR--LIDIVKAFDAPVSTHRADADVEALCAAYRIMLAAIAKMPKDLVS 226 >gi|325128584|gb|EGC51455.1| DNA polymerase III subunit epsilon [Neisseria meningitidis N1568] Length = 55 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R E Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEE 54 >gi|308068487|ref|YP_003870092.1| DNA polymerase III subunit epsilon [Paenibacillus polymyxa E681] gi|305857766|gb|ADM69554.1| DNA polymerase III, epsilon chain [Paenibacillus polymyxa E681] Length = 245 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 4/171 (2%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTG ++ D I+ GA+ ++ + F + P +L GIT Sbjct: 61 VVFDLETTGFSAQHGDEILSFGAIRVVGDMVMEKEQFYTLVNP-RTVIPEHITELTGITR 119 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRIIDT 126 E P + +F F + A + ++ ++ Sbjct: 120 EMTDQAPPLMNGLHDFMSFVGGRVLVAHASAHDKAFLNAALWKTSKVQLTHRVLDTMMLA 179 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + ++H + D + I H + A + + L +M+ Sbjct: 180 KWLEPQQHQTYSLDELLAYQSIPIEGRHHALEDAKMTAKLWVAYVQEMLKR 230 >gi|153867763|ref|ZP_01998021.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. SS] gi|152144917|gb|EDN71979.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. SS] Length = 149 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 6/129 (4%) Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +I DTL++AR+ HP +N L++LCKRY + S R +HGALLD+ +L++VY+ M G Sbjct: 23 HYCQKITDTLALARKCHPGQKNTLDALCKRYHVDNSTRQRHGALLDAKILAEVYLAMTGG 82 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---- 233 + TNE K+ P S +R + ++EEL H++ + + K Sbjct: 83 QVSLLVQRNTNESNNANIMKQLKPIPS--QRAILVRITPSEEELRAHEQCLIAIEKASGG 140 Query: 234 NAIWDRYIS 242 +W ++++ Sbjct: 141 KCLWQKFMT 149 >gi|319745868|gb|EFV98158.1| DNA polymerase III PolC [Streptococcus agalactiae ATCC 13813] Length = 1468 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD Sbjct: 430 YVVFDVETTGLSAANNDLIQIAASKMFKGNII-EQFDEFIDP-GHPLSAFTTELTGITDN 487 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + EF +F +AHNA FDVGF+NA +R N + I Sbjct: 488 HVRGSKPILQVLQEFQNFCQG--TVLVAHNATFDVGFMNANYERHNLPLITQPVIDTLEF 545 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ + + H H A D+ + + + Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH--HHMANYDAEATGRLLFIFLKEARE 595 >gi|77414701|ref|ZP_00790833.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 515] gi|77159245|gb|EAO70424.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 515] Length = 1036 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD Sbjct: 430 YVVFDVETTGLSAANNDLIQIAASKMFKGNII-EQFDEFIDP-GHPLSAFTTELTGITDN 487 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + EF +F +AHNA FDVGF+NA +R N + I Sbjct: 488 HVRGSKPILQVLQEFQNFCQG--TVLVAHNATFDVGFMNANYERHNLPLITQPVIDTLEF 545 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ + + H H A D+ + + + Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH--HHMANYDAEATGRLLFIFLKEARE 595 >gi|300727971|ref|ZP_07061349.1| exonuclease [Prevotella bryantii B14] gi|299774813|gb|EFI71427.1| exonuclease [Prevotella bryantii B14] Length = 279 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 68/198 (34%), Gaps = 6/198 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+FD+ETTGLD NDRII+I ++++ + R + P + L GIT+E Sbjct: 10 IIFDLETTGLDMVNDRIIQISYIKVMPNGEEKRG-DELVNPE-KPIPAFVSDLTGITNEQ 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ P+F I ++ D F + N L+ R+ID +I Sbjct: 68 VKNAPTFKEIGTKLADIFKGCDFAGFNSNRFDIPLLCEEFLRAGIDFDFSKCRLIDAQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + ++ A Y + + + E Sbjct: 128 FHK----MEKRNLAAAYKFYTGHKMEDDFEAHRADQDTEATYRVLQGELDMYDPDKQEEE 183 Query: 190 DRFFKEEKKTVPNISLLK 207 +R + S Sbjct: 184 ERKLPNNMDVLHEFSKQN 201 >gi|288929578|ref|ZP_06423422.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 317 str. F0108] gi|288329083|gb|EFC67670.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 317 str. F0108] Length = 900 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 2/107 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL+ D I++I AV++ F VF+ R + Sbjct: 518 VVFDTETTGLNVFEDDIVQIAAVKMRAGCVVEGAAFNVFIKTE-RPIPAMLGDIPNPIVA 576 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 L+ + + N+ +AHNA FD + LQR Sbjct: 577 ELQHNTCLPAAQALQSFMQYVGNSMLLAHNADFDYNILRFNLQRYCP 623 >gi|77412300|ref|ZP_00788615.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae CJB111] gi|77161647|gb|EAO72643.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae CJB111] Length = 1468 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD Sbjct: 430 YVVFDVETTGLSAANNDLIQIAASKMFKGNII-EQFDEFIDP-GHPLSAFTTELTGITDN 487 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + EF +F +AHNA FDVGF+NA +R N + I Sbjct: 488 HVRGSKPILQVLQEFQNFCQG--TVLVAHNATFDVGFMNANYERHNLPLITQPVIDTLEF 545 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ + + H H A D+ + + + Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH--HHMANYDAEATGRLLFIFLKEARE 595 >gi|332293348|ref|YP_004431957.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332171434|gb|AEE20689.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 466 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 7/165 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG +RI EI AV L D ++ F + P + P L GI D + Sbjct: 11 VIDVETTGKGINGNRITEICAVRLKDGEVVDK-FTSLVNPE-QYIPPFITNLTGIDDAMV 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D P F+ I + A ++AHN FD + +E +R+ LS Sbjct: 69 ADAPLFNEIADRIIE--ISSGAIFVAHNVTFDFNVLRSEFKRLGHSFTRKKLCTVRLSRK 126 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L +LC GI ++H A D+ ++ +++ Sbjct: 127 LIPS-LFSYSLGNLCASIGIP--LNNRHRAEGDTDATVILFKRLL 168 >gi|22538049|ref|NP_688900.1| DNA polymerase III PolC [Streptococcus agalactiae 2603V/R] gi|25011937|ref|NP_736332.1| DNA polymerase III PolC [Streptococcus agalactiae NEM316] gi|76798733|ref|ZP_00780952.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 18RS21] gi|54036993|sp|P63984|DPO3_STRA5 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|54040954|sp|P63983|DPO3_STRA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|22534952|gb|AAN00773.1|AE014277_21 DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 2603V/R] gi|24413479|emb|CAD47557.1| DNA polymerase III (alpha subunit) [Streptococcus agalactiae NEM316] gi|76585912|gb|EAO62451.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 18RS21] Length = 1468 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD Sbjct: 430 YVVFDVETTGLSAANNDLIQIAASKMFKGNII-EQFDEFIDP-GHPLSAFTTELTGITDN 487 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + EF +F +AHNA FDVGF+NA +R N + I Sbjct: 488 HVRGSKPILQVLQEFQNFCQG--TVLVAHNATFDVGFMNANYERHNLPLITQPVIDTLEF 545 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ + + H H A D+ + + + Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH--HHMANYDAEATGRLLFIFLKEARE 595 >gi|149376092|ref|ZP_01893858.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893] gi|149359729|gb|EDM48187.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893] Length = 483 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 74/202 (36%), Gaps = 7/202 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 DIETTG + +DRI EIG + +Q + P R SP L GIT++ Sbjct: 13 FAFLDIETTGGNPSHDRITEIGIRFWRAGAVVGE-WQTLVNPETR-ISPFIESLTGITND 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P F I + ++AHNA+FD GFI + L ++++ T+ Sbjct: 71 MVADAPVFEDIAEVLEKQLKD--TIFVAHNARFDYGFIK--AEFRRLGLLFSAKVLCTVK 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++R+ +P R +H AL D + + +V Sbjct: 127 LSRKLYPGFRRHNMDALIERHGL-EQVQRHRALGDVAAMMAFFEHALVEKGSGAMEAAIR 185 Query: 189 EDRFFKEEKKTVPNISLLKRDK 210 +P L + Sbjct: 186 NLLQKPSIPSNLPTDVLQNLPR 207 >gi|166240304|ref|XP_001733024.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4] gi|165988531|gb|EDR41046.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4] Length = 483 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 78/194 (40%), Gaps = 5/194 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R I FD+ET+G+ + +D IIEIGAVEL+D +T FQ + P + + Sbjct: 294 IPIKKGRVICFDLETSGV-TSSDTIIEIGAVELIDGCRTGVIFQSYAQPKAQIHPVSEQI 352 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + + + P + S N+ +AHN FD + EL R N Sbjct: 353 HQLTSLQLMSAPPIEIILASFMD---WVGNSPLVAHNLAFDKRILIQELIRYNIPFNIDH 409 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL-LDSHLLSDVYIKMMVGGSQ 180 T+ ++ + L+S+ ++ I K +DS +L+ +Y +++ Sbjct: 410 ICFCTMKYFKKIYNGLNYSLDSISQKLKINKLLLRKTHGALIDSEILAIIYTHLLIVDPN 469 Query: 181 INFGFKTNEDRFFK 194 K Sbjct: 470 TAVKKIIANSTTNK 483 >gi|325103921|ref|YP_004273575.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145] gi|324972769|gb|ADY51753.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145] Length = 459 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 82/203 (40%), Gaps = 7/203 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + DIETTG + R+ EI AV + D + + + P + L GI+D Sbjct: 6 NYAIVDIETTGAYAGGSRMTEI-AVLIHDGVQVVEEYHTLINPK-QSIPHYIQVLTGISD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + D P F ++ ++ + + ++AHN FD F++++L+ L ++ Sbjct: 64 DMVSDAPEFENVAAKVFSLLQD--KIFVAHNVGFDYSFVHSQLRECGY-YLRSPKLCTVR 120 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + L LC+ GI I +H A D+ + ++ +++ ++ + + Sbjct: 121 LSRKCFPGLPSYSLGKLCQSLGIAI--NDRHRAYGDARATAVLFGRILSADNEGHIQLQL 178 Query: 188 NEDRFFKEEKKTVPNISLLKRDK 210 + VP + + Sbjct: 179 KKGYKEHRLPSQVPLSEFEQLPE 201 >gi|73537451|ref|YP_297818.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134] gi|72120788|gb|AAZ62974.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134] Length = 530 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 6/105 (5%) Query: 8 RKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IVF D+ETTG D+++DRI EIG VE+ + + L P G P +L GIT Sbjct: 30 RPIVFVDLETTGADAQHDRITEIGVVEVGPEGI--QEWDTLLDP-GVSIPPFIQRLTGIT 86 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 DE ++ +P+F+SI + ++AHNA+FD GF+ E + Sbjct: 87 DETVQGQPTFASIAEALAERLQG--RLFVAHNARFDYGFLKNEFR 129 >gi|296127268|ref|YP_003634520.1| DNA polymerase III, epsilon subunit [Brachyspira murdochii DSM 12563] gi|296019084|gb|ADG72321.1| DNA polymerase III, epsilon subunit [Brachyspira murdochii DSM 12563] Length = 252 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 76/194 (39%), Gaps = 5/194 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTGL + D+IIEIGA++ D + F + IT++ + Sbjct: 63 IIDVETTGLKPREDKIIEIGAIKYRDNKEI-DYFSTLVK--VDYIPNFISSYTNITNKMV 119 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K+ P +F+DF + + +N FD+ F+ L ++ L + + Sbjct: 120 KNAPRVDEAIKQFYDFVGD--DILVGYNVPFDIKFLYDALYEVSNGELLLNNDFIDVMYI 177 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 ++ + + IS + H A+ D L S +Y + + F Sbjct: 178 AKRVLKDLENYKQVTVASYYNISIDNLHRAMGDCKLCSAIYECLQKDILEKWGAFNKFYK 237 Query: 191 RFFKEEKKTVPNIS 204 ++ K + K N + Sbjct: 238 KYPKIKNKIENNKN 251 >gi|225871273|ref|YP_002747220.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047] gi|225700677|emb|CAW95265.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047] Length = 1465 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNII-EQFDEFINP-GHPLSAFTTELTGITDN 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + F F +AHNA FDVGF+NA R + I Sbjct: 485 HLVGAKPIQQVLEAFQAFCQG--TILVAHNASFDVGFMNANYDRYGLAKISQPVIDTLEL 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEARE 592 >gi|262341288|ref|YP_003284143.1| DNA polymerase III subunit epsilon [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272625|gb|ACY40533.1| DNA polymerase III subunit epsilon [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 256 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 76/204 (37%), Gaps = 9/204 (4%) Query: 2 IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 ++ R I FDIE TG++ DRIIEI +++ + ++ ++T+ +CP G P++ Sbjct: 1 MKLKLHRPICFFDIEATGINIGKDRIIEISILKIFPNGNQEDKTW--LVCP-GIPIPPQS 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGI +E ++ K F + + + N L+ + Sbjct: 58 TAIHGIKNEDVEGKLKFKDVAFSIFKMIENTDLAGYNSNRFDIPILAEEMLRAGISFDIK 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ID I + P S +Y + H + D+ ++ + + Sbjct: 118 KHKTIDVQVIFHKMEP----RTLSAAYKYYCSKELIKAHSSKEDAFATYEILLSQLEKYE 173 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203 + K+ ++ + Sbjct: 174 NLKKDVKSLNQFSHQKNIADLAGF 197 >gi|195978859|ref|YP_002124103.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975564|gb|ACG63090.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 1465 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNII-EQFDEFINP-GHPLSAFTTELTGITDN 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + F F +AHNA FDVGF+NA R + I Sbjct: 485 HLVGAKPIQQVLEAFQAFCQG--TILVAHNASFDVGFMNANYDRYGLAKISQPVIDTLEL 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEARE 592 >gi|270284149|ref|ZP_05965623.2| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093] gi|270277190|gb|EFA23044.1| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093] Length = 214 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 4/97 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I DIETTGL + + I EIGAV + D +R F + + P G+ L GI+D Sbjct: 18 YISLDIETTGLAPRQETITEIGAVRVRDGRIADR-FSMLINP-GKHIPSRITALTGISDA 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 ++D P F D+ + I HN +FD+ F Sbjct: 76 MVEDAPMIDEAIPAFVDWVDGDR--LIGHNIRFDLSF 110 >gi|27379228|ref|NP_770757.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA 110] gi|27352379|dbj|BAC49382.1| blr4117 [Bradyrhizobium japonicum USDA 110] Length = 223 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 69/169 (40%), Gaps = 4/169 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D ETTGL+ + D ++ I A+++ + T+ F+ + P+ EA+K+H + Sbjct: 32 FVVIDCETTGLNVRTDNVVAIAAIKIRGNRILTSARFEAIVHPDSELE-AEAIKIHRLRR 90 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ P + F F + ++ + +I + + + Sbjct: 91 SDVEASPIVWKVLPGFLHFIGPRPLIGYYVDFDIAMLDKYILPLVGIELPNERIEVSRLY 150 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P++ DL+ + + I +H A D+ + + +++++ Sbjct: 151 YERKYGNAPPNTEVDLSFAAILHDLCIPPLGQHDAFNDALMTAMMFLQL 199 >gi|301166002|emb|CBW25576.1| putative DNA polymerase III PolC-type alpha subunit [Bacteriovorax marinus SJ] Length = 295 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 49/214 (22%), Positives = 93/214 (43%), Gaps = 7/214 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGL D++IE+ A+++ Y + F + P + + +HGIT++ Sbjct: 21 VALDLETTGLSPLIDKVIELSAIKVTPYGE--EVFDELIDPK-IEIPKFTIDIHGITNDM 77 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ K + + EF +F +AHNAKFD+GFI + +I + Sbjct: 78 VQGKRTLDKVLPEFINFIGS--LPLVAHNAKFDLGFIVFGMHQIGLPLHESHVYCSCKFS 135 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 S+ L++L + I + H AL D+ VY + + + + Sbjct: 136 RYALRGSTNFKLSTL--TTELEIPLENHHRALDDAIACLKVYERGLRVFKKPDRKILNEG 193 Query: 190 DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 F ++ + + K+ KPL ++ +E+ E Sbjct: 194 HLFKLKDFDKQDDFEIPKKLKPLQDKVKDQEMIE 227 >gi|170017004|ref|YP_001727923.1| Rad3-related DNA helicase [Leuconostoc citreum KM20] gi|169803861|gb|ACA82479.1| Rad3-related DNA helicase [Leuconostoc citreum KM20] Length = 801 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 79/206 (38%), Gaps = 8/206 (3%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTG +K RII+IG + + F+ F+ P + +L I+ Sbjct: 7 FVVVDLETTGQSVAKGGRIIQIGMTFIKNRRII-DHFESFVNP-AQPIDRNIQQLTHISQ 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +K+ P F I + + IAHN FD ++N E R L + I Sbjct: 65 KEVKNAPYFEEIAPVIQNLLTD--TVIIAHNVNFDYPYLNDEFARTGFPELTNAAIDTVQ 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-INFGFK 186 + L L IT + H A D+H + +++ + Q + Sbjct: 123 LAQILLPTAPGYRLLDLTTYLNIT--LNNAHRANADAHATALLFLSLWQRAEQLPTLVLQ 180 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPL 212 ++ + ++T + L+K Sbjct: 181 QLQNGNWPLLRQTQAFLQLIKAKSKR 206 >gi|323126468|gb|ADX23765.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 1465 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD+ Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ ++ F DF + + +AHNA FDVGF+NA +R N + I Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHNLPKITQPVIDTLEF 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLRDARE 592 >gi|115350920|ref|YP_772759.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD] gi|115280908|gb|ABI86425.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD] Length = 375 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 8/165 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG S RI EIG VE+ + T+ + P G+ P +L GI+D+ Sbjct: 16 VFVDLETTGGSSAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQSIPPFIQQLTGISDDM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+S+ ++ + ++AHNA FD GF+ AE +R Sbjct: 73 VRDAPSFASLAPTLFERLDG--KLFVAHNASFDRGFLRAEFERAGIAFNPDVLCT-VRLS 129 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R+ L++L +R+G+ ++H AL D+ LL + ++ Sbjct: 130 RALFPREARHGLDALIERHGLV--PAARHRALADADLLWQFWRQL 172 >gi|53714270|ref|YP_100262.1| DNA polymerase III subunit epsilon [Bacteroides fragilis YCH46] gi|60682326|ref|YP_212470.1| putative DNA polymerase III subunit epsilon [Bacteroides fragilis NCTC 9343] gi|253564786|ref|ZP_04842242.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5] gi|265766238|ref|ZP_06094279.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16] gi|52217135|dbj|BAD49728.1| DNA polymerase III epsilon chain [Bacteroides fragilis YCH46] gi|60493760|emb|CAH08550.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis NCTC 9343] gi|251946251|gb|EES86628.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5] gi|263253906|gb|EEZ25371.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16] gi|301163800|emb|CBW23355.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis 638R] Length = 257 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 65/172 (37%), Gaps = 8/172 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + +DRI+EI +++ + ++ ++T + + P E+ +HGI D Sbjct: 10 VFFDLETTGTNINSDRIVEICYLKVYPNGNEESKTLR--INPE-MPIPAESSAVHGIYDA 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + + + N L+ + + +D Sbjct: 67 DVADCPTFKEVAKSIANDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMSKRKFVDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I + + ++ + H A D+ +V + + + Sbjct: 127 IFHK----MEQRTLTAAYKFYCGRNLEDAHTAEADTRATYEVLMAQLDRYPE 174 >gi|326522268|dbj|BAK07596.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 323 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 69/179 (38%), Gaps = 13/179 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTG + DRIIE +L N TFQ + P R+ A+ Sbjct: 125 VFDIETTGFSRRGDRIIEFAVRDLTGGK--NSTFQTLINPE-REVKNAAVHGISTNMVCS 181 Query: 71 KDKPSFSSIFSEFWDFFNEQN-----AEWIAHN-AKFDVGFINAELQRINKDPLDPSRII 124 D P F + + W+AHN FDV F+ E QR ++ + Sbjct: 182 SDIPRFGEFIPILLQYVWSRQVAGKPVMWVAHNGKTFDVPFLIFEFQRCKQEMPGDWLFV 241 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSK----HGALLDSHLLSDVYIKMMVGGS 179 DTL IA++ S+ ++S + + H A+ D L V K+ Sbjct: 242 DTLPIAKQLVDSNGKKISSASMKNLVEHYKIPVDGKAHRAMRDVTALCYVLQKLTFELK 300 >gi|251781676|ref|YP_002995978.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390305|dbj|BAH80764.1| DNA polymerase III subunit alpha [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 1465 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD+ Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ ++ F DF + + +AHNA FDVGF+NA +R N + I Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHNLPKITQPVIDTLEF 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLRDARE 592 >gi|225867817|ref|YP_002743765.1| DNA polymerase III PolC-type [Streptococcus equi subsp. zooepidemicus] gi|197941223|gb|ACH78331.1| DNA polymerase [Streptococcus equi subsp. zooepidemicus] gi|225701093|emb|CAW97928.1| DNA polymerase III PolC-type [Streptococcus equi subsp. zooepidemicus] Length = 1465 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNII-EQFDEFINP-GHPLSAFTTELTGITDN 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + F F +AHNA FDVGF+NA R + I Sbjct: 485 HLVGAKPIQQVLEAFQAFCQG--TILVAHNASFDVGFMNANYDRYGLAKISQPVIDTLEL 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEARE 592 >gi|333030104|ref|ZP_08458165.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis DSM 18011] gi|332740701|gb|EGJ71183.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis DSM 18011] Length = 256 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 68/192 (35%), Gaps = 8/192 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + +DRI+EI +++ + ++ ++T + + P E+ +HGI DE Sbjct: 10 VFFDLETTGTNINSDRIVEICYLKVHPNGNEESKTLR--INPE-MPIPAESSAIHGIFDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + + N L+ L + +D Sbjct: 67 DIADCPTFKEVAKNIAKDIEGSDLAGFNSNRFDIPLLAEEFLRAGVDIDLSKRKFVDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + S ++ + H A D+ +V + + ++ Sbjct: 127 IFHK----MEQRTLSAAYKFYCDKNLEDAHSAEADTRATYEVLMAQLDRYDELKNDIAFL 182 Query: 189 EDRFFKEEKKTV 200 D + Sbjct: 183 SDYSSYNNNVDL 194 >gi|301167913|emb|CBW27498.1| putative DNA polymerase III PolC-type [Bacteriovorax marinus SJ] Length = 438 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 6/174 (3%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N + VFD+ETTG + K+D+IIEIG V++ ++ ++ + P + KL Sbjct: 9 NNLEFCVFDLETTGGNHKSDKIIEIGLVKIKNFEVIDQK-NYLIQPEIK-IPEFIQKLTS 66 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I +E +KD P + E F + + +AHN FDV F N+ L+R+ K L + Sbjct: 67 IKEEDVKDSPVIEDVIDEILKFMGD--SILVAHNTSFDVPFFNSVLKRLGKPQLKNKSLC 124 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 L ++LN + K +GI H AL D+ +++ + + Sbjct: 125 TNLMTKYLIPNLMNSNLNYMSKIFGIKHKKA--HRALDDALATAELLLIYLKIY 176 >gi|297566609|ref|YP_003685581.1| DNA polymerase III subunit epsilon [Meiothermus silvanus DSM 9946] gi|296851058|gb|ADH64073.1| DNA polymerase III, epsilon subunit [Meiothermus silvanus DSM 9946] Length = 252 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 10/178 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + + IIEI + L + + FQ F+ P G P +L GIT Sbjct: 80 VVLDLETTGLSALENEIIEIAFIRLEGEKR--QVFQRFVNP-GSPIPPFISRLTGITHRD 136 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ P ++ E + + I NA FD+GF+ + + + +IDT++ Sbjct: 137 LEGAPDVYTVLEEALPLLED--SVLIIQNAPFDLGFLR--PRFLRLGYKMDNEVIDTVAW 192 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGSQINFG 184 ARR P + S+H AL D + M+ G + G Sbjct: 193 ARRALPGLSKRGLDHLAWAFDLDTIVSRHRALGDVEATLLVAKEMYYMLTAGKPLALG 250 >gi|325478691|gb|EGC81802.1| CRISPR-associated endoribonuclease Cas2 [Anaerococcus prevotii ACS-065-V-Col13] Length = 292 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 1/94 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +V DIET+GLD + +IIEIGAV + F+ + + S E +KL GITD Sbjct: 124 KYVVVDIETSGLDYEKHKIIEIGAVLTNSQGEVLDKFESLIRQEIK-LSNEIIKLTGITD 182 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 L + + +F F N Sbjct: 183 NDLINGGDEKKVLEDFVCFIKNHPLVGYNFNFDM 216 >gi|28210814|ref|NP_781758.1| DNA polymerase III subunit epsilon [Clostridium tetani E88] gi|28203252|gb|AAO35695.1| DNA polymerase III alpha subunit [Clostridium tetani E88] Length = 380 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 7/197 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGL D+IIEI A++ + + + P A +++ IT+ Sbjct: 84 FVVIDLETTGLYPVTDKIIEITAIKYKSGQIVEK-YNTLINPK-INIPKRATEINNITNN 141 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + E F E +AHNA FD+ F+NA L IN++ + + LS Sbjct: 142 MVKDSPVIEDVLPELLKFIKE--YPLVAHNASFDIKFLNANLALINREIKNVAIDTLQLS 199 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 A + + IS + H AL D +++Y+ + F Sbjct: 200 RAMYTFLPNHKLTTIK---EHLCISEDNSHRALPDCITTAEIYLDYCYKANNNLKEFNEL 256 Query: 189 EDRFFKEEKKTVPNISL 205 E FK K + + Sbjct: 257 EKACFKVIKDMLNKNNR 273 >gi|256827805|ref|YP_003151764.1| exonuclease, DNA polymerase III, epsilon subunit family [Cryptobacterium curtum DSM 15641] gi|256583948|gb|ACU95082.1| exonuclease, DNA polymerase III, epsilon subunit family [Cryptobacterium curtum DSM 15641] Length = 1043 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 9/188 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG+ D + +I A +++ F F+ P GR E L I + Sbjct: 38 VVIDTETTGISFVRDELTQIAAARMVEGKIV-DWFVTFVNP-GRPIPEEISHLTSIYESD 95 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D PS + DF E +AHNA FD + + + L + ID+L + Sbjct: 96 VADAPSPEEAVFQLVDFVGESC--LVAHNAAFDK---HFCTKPATGESLTHNIWIDSLDL 150 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 AR P ++ L + S H A D L V+ ++ ++ G Sbjct: 151 ARIALPRLKSHR--LLDLVRAFDAPLSTHRADADVEALCAVFRILLAAVDAMSQGLIDEI 208 Query: 190 DRFFKEEK 197 EE+ Sbjct: 209 AAMATEEE 216 >gi|256421379|ref|YP_003122032.1| exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis DSM 2588] gi|256036287|gb|ACU59831.1| Exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis DSM 2588] Length = 257 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 66/186 (35%), Gaps = 6/186 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + DRIIEI +++ +T + P G P + +HGI+DE + Sbjct: 12 VIDLETTGTNVATDRIIEIAIIKVFPDKSV-QTKVKRIHP-GMPIPPASTAIHGISDEDI 69 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD P+F +E + + N ++ + LD Sbjct: 70 KDCPTFKQCANELRQYMENCDLAGYNSNRFDI----PLLVEEFLRAGLDFDTKDRRFIDV 125 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 ++ S ++ + H A D+ ++ + Q+ + Sbjct: 126 QKIFHLMEKRTLSAAYKFYCDKDLTNAHSAEADALATYEILEAQLSRYEQLQAEVAPLAE 185 Query: 191 RFFKEE 196 +++ Sbjct: 186 FTKEDD 191 >gi|326772455|ref|ZP_08231739.1| DNA polymerase III, epsilon subunit [Actinomyces viscosus C505] gi|326637087|gb|EGE37989.1| DNA polymerase III, epsilon subunit [Actinomyces viscosus C505] Length = 280 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 57/150 (38%), Gaps = 4/150 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL D I+E+ V + R++ + P G +HG+ E Sbjct: 42 YAVVDLETTGLSPTTDSILEVALVLTDAAGRVERSWSTLIDP-GAGVDVGPTHIHGLVAE 100 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L P F + +AHNA+FDVGF+ EL + T+ Sbjct: 101 ELIGAPGFDEVADLLVADLAG--RAVVAHNARFDVGFLTQELGTRGLLDRGARVPRVCTM 158 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK 157 AR + L + C+ G+ I Sbjct: 159 EWARHFMTTPSRRLTTCCEVAGVEIGRHHN 188 >gi|71904322|ref|YP_281125.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS6180] gi|123747742|sp|Q48R90|DPO3_STRPM RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|71803417|gb|AAX72770.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS6180] Length = 1465 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD+ Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D ++ F DF + + +AHNA FDVGF+NA +R + + I Sbjct: 485 HLQDAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLRDARE 592 >gi|88802420|ref|ZP_01117947.1| DNA Pol III Epsilon Chain [Polaribacter irgensii 23-P] gi|88781278|gb|EAR12456.1| DNA Pol III Epsilon Chain [Polaribacter irgensii 23-P] Length = 275 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG++ DRI+EI +++ + +K ++T+ + P + ++ +HGIT+E Sbjct: 10 VFFDLETTGVNIATDRIVEIAVLKVFPNGNKESKTW--LVNPE-MEIPQASIDVHGITNE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK 100 + +P+F + E + N Sbjct: 67 KVASEPTFKMLAQEVSKLMAGCDLAGFNSNRF 98 >gi|256847046|ref|ZP_05552492.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus coleohominis 101-4-CHN] gi|256715710|gb|EEU30685.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus coleohominis 101-4-CHN] Length = 1448 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 6/198 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL + D++IE+ A ++ D +R F F+ P G S + +L ITD+ Sbjct: 428 YVIFDVETTGLSAIYDKVIELSATKMKDGKVLDR-FDEFIDP-GFPLSEQTTELTSITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ S +F F DF + HN FD+GF+N QR + + I Sbjct: 486 MVQGSKSEEEVFKMFQDFCAG--SIIAGHNVSFDMGFMNTGYQRHHLPEITQPVIDTLPL 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 LN+L K++ +++ H H A D+ + + + + Sbjct: 544 ARFLYPDLRGYRLNTLSKKFKVSLEH--HHRANYDAEATGHLLHIFLKDAEKRYQVVYVD 601 Query: 189 EDRFFKEEKKTVPNISLL 206 + + + Sbjct: 602 DLNKHMTDNGAYRHARPF 619 >gi|332993984|gb|AEF04039.1| ribonuclease T [Alteromonas sp. SN2] Length = 218 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++ D ++EI AV + ++TF + P G P AL+ +G Sbjct: 18 VVIDVETAGFNAGTDALLEIAAVTVKMEEDGLIYPDQTFHYHVDPFEGANLEPAALEFNG 77 Query: 65 ITDE--------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + S + + Q + +AHNA FD F+NA + R N Sbjct: 78 IDPHCALRGAIEESEAMKSLCKGIRKAQKDADCQRSVIVAHNATFDQSFVNAAIARCNIK 137 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + + L C+ GI + H AL D+ ++++ M+ Sbjct: 138 RTPFHPFVSFDTTSLAGLTLGQTVLVKACRAAGIEFDQKEAHSALYDAQKTTELFCFMVN 197 Query: 177 GGSQIN 182 + Sbjct: 198 RYKALG 203 >gi|254252965|ref|ZP_04946283.1| DNA polymerase III [Burkholderia dolosa AUO158] gi|124895574|gb|EAY69454.1| DNA polymerase III [Burkholderia dolosa AUO158] Length = 375 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 8/165 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG S RI EIG VE+ + T+ + P G+ P +L GI+D Sbjct: 16 VFVDLETTGGSSAEHRITEIGVVEVGPLGVS--TWTTLVNP-GQSIPPFIQQLTGISDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+S+ ++ + ++AHNA FD GF+ AE +R Sbjct: 73 VRDAPSFASLAPALFERLDG--KLFVAHNASFDRGFLRAEFERAGYAFNPDVLCT-VRLS 129 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R+ L++L +R+G+ ++H AL D+ LL + ++ Sbjct: 130 RALFPREARHGLDALIERHGLV--PSARHRALADADLLWQFWRQL 172 >gi|319953942|ref|YP_004165209.1| exonuclease rnase t and DNA polymerase iii [Cellulophaga algicola DSM 14237] gi|319422602|gb|ADV49711.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga algicola DSM 14237] Length = 258 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 79/214 (36%), Gaps = 9/214 (4%) Query: 2 IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 ++ R I FD+ETTG++ DR++EI +++ + +K ++T+ + P E Sbjct: 1 MQLKLTRPICFFDLETTGINVAKDRVVEIAILKIHPNGNKESKTW--LVNPE-MVIPDEV 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + +HGIT+E + ++P+F + + ++ + + + + + + +D Sbjct: 58 IAVHGITNEKVANEPTFKELSKDIYNMIKDSDLGGFNSDRFDI----PLLAEEMLRSEID 113 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++ H A D++ +V + + Sbjct: 114 FDMKNRVAVDVQTIFHKMEKRTLGAAYKFYCDKDLIDAHSAAADTNATYEVLLSQLDRYP 173 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 ++ K + + +L D+ Sbjct: 174 ELENNMKMLAEFSSHKRTVDFAGFIILDEDEEEV 207 >gi|24378642|ref|NP_720597.1| DNA polymerase III PolC [Streptococcus mutans UA159] gi|32469722|sp|Q8DWE0|DPO3_STRMU RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|24376501|gb|AAN57903.1|AE014864_1 DNA polymerase III, alpha subunit [Streptococcus mutans UA159] Length = 1465 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 13/211 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S L GITD+ Sbjct: 425 YVVFDVETTGLSAINNDLIQIAASKMHKGNIV-EQFDEFIDP-GHPLSQFTTDLTGITDQ 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K S + EF F + +AHNA FDVGF+NA +R + + I Sbjct: 483 HVKGAKPISQVLQEFQSFCQD--TVLVAHNATFDVGFMNANYERHDLPKITQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-------I 181 R+ L L KR+ +++ H H A D+ + + + + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEAKEKHGVNNLL 598 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 + K +D +K+ + I +L + Sbjct: 599 DLNTKIVDDNSYKKARVKHATIYVLNQKGLK 629 >gi|327404630|ref|YP_004345468.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823] gi|327320138|gb|AEA44630.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM 16823] Length = 284 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 10/193 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR--TFQVFLCPNGRKNSPEALKLHGI 65 ++ D+ETTGLD DRIIEI ++ + T + + P S E+ ++ GI Sbjct: 8 NFVMLDLETTGLDVAKDRIIEIALIKT---TPTGEQSEYCKRVNP-TIPISKESAEITGI 63 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE + +P+F + E F + + N L+ + ++ + ID Sbjct: 64 TDEMVATEPTFEQLADEIAAFIGDADLGGYNSNKFDIPVLAEEFLRISHSFKINDRKFID 123 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +I + + ++ + H AL D+ + DV+ + + Sbjct: 124 VQNIFHK----MEQRTLAAAYQFYCKEPMENAHNALYDTKVTLDVFKAQLERYPDLAKSI 179 Query: 186 KTNEDRFFKEEKK 198 D + ++ Sbjct: 180 PELADFSRQGNQE 192 >gi|154488710|ref|ZP_02029559.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis L2-32] gi|154082847|gb|EDN81892.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis L2-32] Length = 210 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 65/174 (37%), Gaps = 9/174 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D ETTGL K DR IEIG V + + + S A +H IT Sbjct: 5 FAVVDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLI---HVDRSVGASWVHHITA 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L P F I E D ++AHN FD F+ AE + + Sbjct: 62 RDLLHAPDFEGIAHELRDLLAG--RVFVAHNVSFDSRFLLAEYS-RMGASIPVHQSTMLC 118 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++ + R L+ C +GI + H AL D+H + + +++ Sbjct: 119 TMKLSRSLIGRGKLSDCCDYFGIA--NEDAHSALSDAHATALLLGRLLEADPNW 170 >gi|41408028|ref|NP_960864.1| hypothetical protein MAP1930 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396383|gb|AAS04247.1| hypothetical protein MAP_1930 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 643 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +V D+ETTG S + D I EIGAV++ F + P R P+ ++L Sbjct: 40 FVVVDLETTGGRSTSTEETAPDAITEIGAVKVRGGVVLGE-FATLVDPQ-RSIPPQIMRL 97 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDPS 121 GIT + D P+ ++ F +F A +AHNA FDVGF+ A Q+ + P Sbjct: 98 TGITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRPR 157 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + R + ++ + H AL D+ DV ++ Sbjct: 158 VLCTVRLARRVLSREEAPSVRLASLARLFAVTTQPTHRALDDARATVDVLHALIER 213 >gi|150377384|ref|YP_001313979.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419] gi|150031931|gb|ABR64046.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium medicae WSM419] Length = 308 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 76/239 (31%), Gaps = 33/239 (13%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEALKLH 63 R ++ D ETTGL+ + D IIEIGAV D ++ L PE +L Sbjct: 54 RGLILDTETTGLNHRKDEIIEIGAVAFTFDDAGNIGDVIDLYGGLQQPSISVPPEITRLT 113 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITDE + + E IAHNA FD F A + Sbjct: 114 GITDEMVLGQKI----DLHRLRAVVEPADLIIAHNAGFDRPFCEAFSPIFARKAW----- 164 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV------------Y 171 S++ P+ + L G H A+ D L +V + Sbjct: 165 --ACSVSEIDWPARGFEGTKLGYLIGQAGYFHEGHRAVDDCFALLEVLAQGRAEVERSPF 222 Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKE--ELDEH 224 ++ + F +E R K + I +E + + H Sbjct: 223 AELYGASQRSRIRLFAENSPFDMKEHLKARGYRWSDGSDGRPKSWWIEIAEEALDDELH 281 >gi|19746871|ref|NP_608007.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS8232] gi|24418360|sp|Q8NZB5|DPO3_STRP8 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|19749113|gb|AAL98506.1| DNA polymerase III alpha chain [Streptococcus pyogenes MGAS8232] Length = 1465 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD+ Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ ++ F DF + + +AHNA FDVGF+NA +R N + I Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHNLPKITQPVIDTLEF 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLRDARE 592 >gi|332653359|ref|ZP_08419104.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcaceae bacterium D16] gi|332518505|gb|EGJ48108.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcaceae bacterium D16] Length = 1396 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 49/106 (46%), Positives = 61/106 (57%), Gaps = 5/106 (4%) Query: 9 KIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +IV FDIETTGLD + + IIEIGA L + T TF F+ P GR SPE + L GITD Sbjct: 370 EIVCFDIETTGLDKRREVIIEIGAAVLKNGEVT-ETFNTFVAP-GRILSPEIIHLTGITD 427 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 E L PS F DF + AHNA+FD+GFI+ ++ Sbjct: 428 EMLVGAPSQEEALRAFLDFVGD--RPLAAHNAEFDMGFISTGCRKY 471 >gi|194467815|ref|ZP_03073801.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23] gi|194452668|gb|EDX41566.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23] Length = 283 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 6/98 (6%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL D+II++ A++ +D TF + P+G N+ +++ + I++ Sbjct: 15 YVSVDTETTGLYPMYGDKIIQLSAIKYIDDKLV-DTFDTLINPDGSNNNAKSV--NNISE 71 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 LK++P+F + +F +F + W+ HN FD F Sbjct: 72 SSLKNQPTFDEVIGDFVNFVED--LPWVGHNLSFDFSF 107 >gi|326790794|ref|YP_004308615.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM 5427] gi|326541558|gb|ADZ83417.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM 5427] Length = 237 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 64/167 (38%), Gaps = 6/167 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +V DIETTG IIEIGAV + + + F + P + S + + GIT+ Sbjct: 3 KYVVVDIETTGAHPVQSEIIEIGAVYIEEGQ-VKKIFNELVRP-TQIISDYIISITGITN 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + D P + F DF + I HN + + + + Sbjct: 61 EMVADAPPIEEVMPRFIDFCED--VPLIGHNIILFDYRMLKTKATALGFTFEKMGVDTLV 118 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L LC+ Y IS + H A D+ +++ K+ Sbjct: 119 ISRKMLAHLPSRKLGDLCEHY--AISLENAHRAYHDAFATYELFEKL 163 >gi|116333947|ref|YP_795474.1| DNA polymerase III PolC [Lactobacillus brevis ATCC 367] gi|122269369|sp|Q03QS9|DPO3_LACBA RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116099294|gb|ABJ64443.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus brevis ATCC 367] Length = 1445 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 6/171 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV++ + ++ F+ F+ P G S + L ITD+ Sbjct: 425 YVVFDVETTGLSAIYDKVIELSAVKMEHQNVVDQ-FEEFIDP-GFPLSEQTTNLTSITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S +F F +F + A + HN FDVGF+N QR + I Sbjct: 483 MVAGSKSEEEVFKLFREFCGD--AIIVGHNVTFDVGFMNTGYQRHGMAEISNPIIDTLTL 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 LN+L KR+ +++ H H A+ D+ + + Sbjct: 541 ARFLYPTLKSYRLNTLAKRFHVSLEH--HHRAVYDAESTGHLNYLFLKDAE 589 >gi|34496475|ref|NP_900690.1| DNA-directed DNA polymerase III subunit epsilon [Chromobacterium violaceum ATCC 12472] gi|34102328|gb|AAQ58694.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Chromobacterium violaceum ATCC 12472] Length = 481 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 7/148 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTG + DRI E+G V + + P G+ P + GI++E + Sbjct: 8 IIDLETTGGNIARDRITEVGMVLIDGERV--ERLSWLVNP-GQPIPPFIENMTGISNEMV 64 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P FS+ E D +AHNA+FD GF+ E +R +R + T+ ++ Sbjct: 65 AGAPPFSAQADELLDRLQG--RLLLAHNARFDYGFLKNEFRRHGLR--FQARALCTVKLS 120 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKH 158 RR +P Sbjct: 121 RRLYPQHFKHSLDSLIARHGIDMPERHR 148 >gi|309812650|ref|ZP_07706394.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185] gi|308433345|gb|EFP57233.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185] Length = 608 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 67/174 (38%), Gaps = 3/174 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ET G I EIGAV++ F + P G P+ +L GIT Sbjct: 28 FVIVDLETAGGRPGAQGITEIGAVKVRGGEVLGE-FATLVDP-GCAIPPQIQRLTGITTA 85 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P +S+ F++F +A +AHNA FDVGF+ A + + P+ + Sbjct: 86 MVHNAPKLASVLPAFFEFL-GPDAVLVAHNAPFDVGFLTAAARDLEVPWPAPAVVDTVKL 144 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + S H AL D+ DV ++ + Sbjct: 145 ARALVPRDEVRNHRLGTLAAHFGASVNPNHRALADAQATVDVLHALLSRAGSLG 198 >gi|261496609|ref|ZP_05992989.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307812|gb|EEY09135.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. OVINE] Length = 221 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET GL+++ D ++E+ A+ + Y ++ + P G +PE+LK +G Sbjct: 31 VVIDVETAGLNAQTDALLELAAITVKMDENGYLVEDQKCHFHIKPFEGANINPESLKFNG 90 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + P + Q A +AHNA FD F+ A ++RIN Sbjct: 91 IDIDNPLRGAVAENIAIPEMFKMVRRAMKEQGCQRAIIVAHNATFDQSFLQAAIKRINAK 150 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I H AL D+ ++++ M+ Sbjct: 151 RDPFHPFAMFDTATLAGFMYGQTVLVKACQAAQINFDGHQAHSALYDTEKTTELFCAMVN 210 Query: 177 GGSQIN 182 + Sbjct: 211 KLKDLG 216 >gi|189500246|ref|YP_001959716.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides BS1] gi|189495687|gb|ACE04235.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides BS1] Length = 232 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 64/182 (35%), Gaps = 8/182 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +VFD ETTG D+ D +I IGAV + + +F+V + + + Sbjct: 44 RYVVFDTETTGFDTSRDLVISIGAVAINALHIDVQDSFEVLIRRDNVGEKDAVTTHGLLC 103 Query: 67 DEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + + S+ + + +A + + EL D + Sbjct: 104 KDLDEGGEEQESLDAFINYVSTGVLVAQHADFDVAMINRMLHRYYGFELFNHVIDTASLA 163 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + ++ H S L+ L RY I + +H A D+ L + ++ ++ Sbjct: 164 KRLEKGPYFNLAHKSGEYRLDMLLDRYNIRMH--DRHTAAGDAFLTARLFQMLLAKAEHA 221 Query: 182 NF 183 Sbjct: 222 GI 223 >gi|221632364|ref|YP_002521585.1| exonuclease family [Thermomicrobium roseum DSM 5159] gi|221156848|gb|ACM05975.1| exonuclease family [Thermomicrobium roseum DSM 5159] Length = 982 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 2/91 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIE TG+D + D IIE+ A++ + R F+ + P R L G+T Sbjct: 5 YVALDIEATGMDPERDEIIEVAAIKFREEEVLER-FETLVQP-RRPVPLAVASLTGLTMR 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 L+ PSF I F + + Sbjct: 63 DLRRAPSFQQIAPRLRQFVRNYPIVGQSPDY 93 >gi|171742687|ref|ZP_02918494.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC 27678] gi|171278301|gb|EDT45962.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC 27678] Length = 328 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 9/175 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D ETTGL+ + DR IEIG V + + + A +H I+ Sbjct: 17 YAVVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLIR---VHRDIGAQWIHHISA 73 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L P F I E D ++AHN FD F+ +E + + + Sbjct: 74 VELIHAPEFEGIARELRDLLAG--RVFVAHNVAFDSKFLLSEYR-RLGTDIPVNSHTMLC 130 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++ + L C+ +GI + H AL D+H + + ++M + + Sbjct: 131 TMKLSRSLIGVGSLADCCREFGID--NEDAHSALSDAHATALLLGRLMDADPEWS 183 >gi|172059933|ref|YP_001807585.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6] gi|171992450|gb|ACB63369.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6] Length = 375 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 8/165 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + RI EIG VE+ + T+ + P G+ P +L GI+D+ Sbjct: 16 VFVDLETTGGSTAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQSIPPFIQQLTGISDDM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+S+ ++ + ++AHNA FD GF+ AE +R Sbjct: 73 VRDAPSFASLAPTLFERLDG--KLFVAHNASFDRGFLRAEFERAGIAFNPDVLCT-VRLS 129 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R+ L++L +R+G+ ++H AL D+ LL + ++ Sbjct: 130 RALFPREARHGLDALIERHGLV--PAARHRALADADLLWQFWRQL 172 >gi|154509184|ref|ZP_02044826.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC 17982] gi|153798818|gb|EDN81238.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC 17982] Length = 550 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 6/167 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGL + D I EIGAV + D + + F + P R P L GIT Sbjct: 29 WVVVDLETTGLGAGAD-ITEIGAVRIRDGAVVDE-FSSLVKP-SRPIPPFITSLTGITPA 85 Query: 69 FLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + D +S+ F ++ + +AHNA FDVGF+ + + + Sbjct: 86 MVADAAPIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPRVRIVDT 145 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + +H AL D+ +++ + Sbjct: 146 LALARLALPRPLVRNHKLGTVASYFGTATVPEHRALGDARATAEILL 192 >gi|94989303|ref|YP_597404.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS9429] gi|94993192|ref|YP_601291.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS2096] gi|123257711|sp|Q1J9R4|DPO3_STRPB RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|123382486|sp|Q1JJW3|DPO3_STRPC RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|94542811|gb|ABF32860.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS9429] gi|94546700|gb|ABF36747.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS2096] Length = 1465 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD+ Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ ++ F DF + + +AHNA FDVGF+NA +R + + I Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLRDARE 592 >gi|1794167|dbj|BAA11217.1| unnamed protein product [Vibrio parahaemolyticus] Length = 234 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 1/168 (0%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG + + DR+I IG VE+ + + N VF+ H + Sbjct: 50 VLDFETTGFNPEVDRVISIGWVEIRNSNIRLNSARHVFINHAIDICHESVKVHHIRPETL 109 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 S + F++ D + + +++ N + Sbjct: 110 HVSGISEQAAFTQLLDVIAGKILVAHGCIMEQRFLEQYIKMKYQNLKLPLIWLDTLKIEQ 169 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R + +R+D R + + H AL D+ +++Y+ + Sbjct: 170 YRTQLRPTRSDWRLSSIRKELNLPTYQAHNALNDAIATAELYLAQINC 217 >gi|221201212|ref|ZP_03574252.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] gi|221179062|gb|EEE11469.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] Length = 398 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 8/165 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG RI EIG VE+ + T+ + P G+ P +L GI+D Sbjct: 39 VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 95 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+ + ++ + ++AHNA FD GF+ AE +R Sbjct: 96 VRDAPSFAELAPALFERLDG--KLFVAHNASFDRGFLRAEFERAGFAFNPDVLCT-VRLS 152 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 SR+ L++L R+G+ ++H AL D+ LL + + Sbjct: 153 RALFPRESRHGLDALIARHGLV--PAARHRALADADLLWQFWRHL 195 >gi|221206334|ref|ZP_03579347.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] gi|221173643|gb|EEE06077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] Length = 375 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 8/165 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG RI EIG VE+ + T+ + P G+ P +L GI+D Sbjct: 16 VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+ + ++ + ++AHNA FD GF+ AE +R Sbjct: 73 VRDAPSFAELAPALFERLDG--KLFVAHNASFDRGFLRAEFERAGFAFNPDVLCT-VRLS 129 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 SR+ L++L R+G+ ++H AL D+ LL + + Sbjct: 130 RALFPRESRHGLDALIARHGLV--PAARHRALADADLLWQFWRHL 172 >gi|221213616|ref|ZP_03586590.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] gi|221166405|gb|EED98877.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] Length = 375 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 8/165 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG RI EIG VE+ + T+ + P G+ P +L GI+D Sbjct: 16 VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+ + ++ + ++AHNA FD GF+ AE +R Sbjct: 73 VRDAPSFAELAPALFERLDG--KLFVAHNASFDRGFLRAEFERAGFAFNPDVLCT-VRLS 129 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 SR+ L++L R+G+ ++H AL D+ LL + + Sbjct: 130 RALFPRESRHGLDALIARHGLV--PAARHRALADADLLWQFWRHL 172 >gi|189349710|ref|YP_001945338.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC 17616] gi|189333732|dbj|BAG42802.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC 17616] Length = 375 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 8/165 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG RI EIG VE+ + T+ + P G+ P +L GI+D Sbjct: 16 VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+ + ++ + ++AHNA FD GF+ AE +R Sbjct: 73 VRDAPSFAELAPALFERLDG--KLFVAHNASFDRGFLRAEFERAGFAFNPDVLCT-VRLS 129 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 SR+ L++L R+G+ ++H AL D+ LL + + Sbjct: 130 RALFPRESRHGLDALIARHGLV--PAARHRALADADLLWQFWRHL 172 >gi|189485715|ref|YP_001956656.1| DNA polymerase III epsilon subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287674|dbj|BAG14195.1| DNA polymerase III epsilon subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 198 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTGLD K I+EI +++ + ++ + P G E K+H I D+ Sbjct: 19 VFLDIETTGLDPEKGANIVEIAMLKVCGGIE--ERYESLVNP-GLPIPSECSKIHAIYDD 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 +K+ PSF I + F ++ + HNA FD Sbjct: 76 MIKNSPSFDEIAGNVFSFI--GHSVVVCHNAPFD 107 >gi|161525562|ref|YP_001580574.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC 17616] gi|160342991|gb|ABX16077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC 17616] Length = 398 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 8/165 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG RI EIG VE+ + T+ + P G+ P +L GI+D Sbjct: 39 VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 95 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+ + ++ + ++AHNA FD GF+ AE +R Sbjct: 96 VRDAPSFAELAPALFERLDG--KLFVAHNASFDRGFLRAEFERAGFAFNPDVLCT-VRLS 152 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 SR+ L++L R+G+ ++H AL D+ LL + + Sbjct: 153 RALFPRESRHGLDALIARHGLV--PAARHRALADADLLWQFWRHL 195 >gi|120436594|ref|YP_862280.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803] gi|117578744|emb|CAL67213.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803] Length = 258 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 4/91 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG + DRI+EI +++ + +K + T+ + P R+ E + +HGIT+E Sbjct: 11 FFDLETTGTNISKDRIVEIAVLKVFPNGNKESHTW--LVNPE-REIPAEVIAIHGITNEK 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK 100 + ++P+F + + D + N Sbjct: 68 VANEPTFKELAQKIHDLIKGCDLGGYNSNRF 98 >gi|306826600|ref|ZP_07459906.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782] gi|304431208|gb|EFM34211.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782] Length = 1465 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD+ Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ ++ F DF + + +AHNA FDVGF+NA +R + + I Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLRDARE 592 >gi|126435878|ref|YP_001071569.1| hypothetical protein Mjls_3300 [Mycobacterium sp. JLS] gi|126235678|gb|ABN99078.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS] Length = 630 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 7/172 (4%) Query: 9 KIVFDIETTGLDSKN---DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +V D+ETTG + D I EIGAV++ + P GR P+ + L GI Sbjct: 30 FVVVDLETTGGRATGERPDAITEIGAVKVRGGEVLGE-LATLVDP-GRAIPPQIVSLTGI 87 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + P S+ F + + + +AHNA FD+GF+ A ++ P + Sbjct: 88 TTAMVCAAPRIESVLPAFLE--FARGSVLVAHNAGFDIGFLRAAAEQCGLTWPRPPVLCT 145 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R + H AL D+ DV ++ Sbjct: 146 VKLARRVLTRDEAPSVRLSALAQLFRAKTTPTHRALDDARATVDVLHGLIER 197 >gi|108800255|ref|YP_640452.1| hypothetical protein Mmcs_3289 [Mycobacterium sp. MCS] gi|119869383|ref|YP_939335.1| hypothetical protein Mkms_3351 [Mycobacterium sp. KMS] gi|108770674|gb|ABG09396.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS] gi|119695472|gb|ABL92545.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS] Length = 630 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 7/172 (4%) Query: 9 KIVFDIETTGLDSKN---DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +V D+ETTG + D I EIGAV++ + P GR P+ + L GI Sbjct: 30 FVVVDLETTGGRATGERPDAITEIGAVKVRGGEVLGE-LATLVDP-GRAIPPQIVSLTGI 87 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + P S+ F + + + +AHNA FD+GF+ A ++ P + Sbjct: 88 TTAMVCAAPRIESVLPAFLE--FARGSVLVAHNAGFDIGFLRAAAEQCALTWPRPPVLCT 145 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R + H AL D+ DV ++ Sbjct: 146 VKLARRVLTRDEAPSVRLSALAQLFRAKTTPTHRALDDARATVDVLHGLIER 197 >gi|139474447|ref|YP_001129163.1| DNA polymerase III PolC [Streptococcus pyogenes str. Manfredo] gi|166217453|sp|A2RGI3|DPO3_STRPG RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|134272694|emb|CAM30965.1| DNA polymerase III PolC-type [Streptococcus pyogenes str. Manfredo] Length = 1465 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD+ Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ ++ F DF + + +AHNA FDVGF+NA +R + + I Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLRDARE 592 >gi|256832848|ref|YP_003161575.1| DNA polymerase III, epsilon subunit [Jonesia denitrificans DSM 20603] gi|256686379|gb|ACV09272.1| DNA polymerase III, epsilon subunit [Jonesia denitrificans DSM 20603] Length = 298 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 5/141 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL S+NDR+IE+ V + ++ + P A +H I Sbjct: 4 YAVIDVETTGLSSRNDRVIELAVVHTDTHGTITGHWETLINPQRNLT---AQHIHHIHAS 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F+ I ++ + +AHNA FD F+ AEL R K + T++ Sbjct: 61 HIQHAPLFADIATDLLTLLDG--RVPVAHNAPFDARFLAAELHRTGKTLHQQHDFLCTMN 118 Query: 129 IARRKHPSSRNDLNSLCKRYG 149 ++RR P L Sbjct: 119 LSRRYLPGVGKPLADCLAATN 139 >gi|150016887|ref|YP_001309141.1| exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] gi|149903352|gb|ABR34185.1| Exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] Length = 976 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 I DIETTGLD IIEIGAV++ + T T+ + P GR + + Sbjct: 11 NVIYLDIETTGLDETCSEIIEIGAVKVKNGVIT--TYNTLIRPRGRVPISIYSLCSDLKE 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L S +SI E +F + N + P + I+D++ Sbjct: 69 ADLLSARSLNSIKQEVLEFLEDLPLICHNGNFER--------KFLSFYIPEIKNTIMDSM 120 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +A P + + + ++ H L DS V +++ Sbjct: 121 ELAIILEPWRKEYNLNSLIKEITNLNKDELHRGLSDSIDTLKVVNSLLLRQ 171 >gi|262375958|ref|ZP_06069189.1| ribonuclease T [Acinetobacter lwoffii SH145] gi|262309052|gb|EEY90184.1| ribonuclease T [Acinetobacter lwoffii SH145] Length = 219 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 67/197 (34%), Gaps = 16/197 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54 +V D+ET G +++ D ++EI A+ ++ + + + P Sbjct: 23 VVVDVETAGFNAQTDALLEIAAIPIVYNEEGQFVPGQAYHAHINPFEGANLDRRSLEFIG 82 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P + ++ +E N +A + HNA FD+GF+ A + R Sbjct: 83 IDPSNPMRIAMAEDEKTALKRIFKSVNEVRRQQNCTHAVLVGHNAHFDLGFLQAAIARTG 142 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P + + C + GI + H AL D+ ++++ Sbjct: 143 TKNQNPFHSFSVFDTVTLSAVMFGQTVLAKSCIQAGIEFDGKEAHSALYDTQKTAELFCY 202 Query: 174 MMVGGSQINFGFKTNED 190 ++ + + Sbjct: 203 ILNKLAPHLLDTLVADQ 219 >gi|224826335|ref|ZP_03699437.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] gi|224601436|gb|EEG07617.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] Length = 476 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 5/128 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTG DRI EIG + + ++ + P G+ P + GI+D + Sbjct: 9 IVDLETTGGHITRDRITEIGILLIDGERI--ERYETLVNP-GQPIPPFIENMTGISDAMV 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F+++ + +AHNA+FD GF+ E +R LS Sbjct: 66 AEAPPFAALVETLLEKLQG--RLLLAHNARFDYGFLKNEFKRAGHVFQSEVLCTVKLSRR 123 Query: 131 RRKHPSSR 138 Sbjct: 124 LYPQHFKH 131 >gi|315179445|gb|ADT86359.1| DNA polymerase III, epsilon chain [Vibrio furnissii NCTC 11218] Length = 224 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 7/168 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 DIET+GLD+++D I+ IG V +++ + P+G+ + + + H + Sbjct: 37 LDIETSGLDAEHDHIVSIGWVPIVNQVIRLAEARYFLITPSGQDDPQQVVLHHIMPQMQR 96 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P + + + + + P+ + Sbjct: 97 QGIP-LAQAIELLFTQLKGKVLLAHGSVVERQFIHHFMQQHGWPDLPIVWLDTLKIEQAY 155 Query: 131 RRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P + N+ R + H AL D+ +++Y+ Sbjct: 156 AQYAPYNTPHSNANDWRLSTVRKRYHLPAYQAHHALSDAIATAELYLA 203 >gi|326773509|ref|ZP_08232792.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505] gi|326636739|gb|EGE37642.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505] Length = 465 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 68/205 (33%), Gaps = 4/205 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + EIGAV++ F + P G + L GIT+ Sbjct: 22 FVVVDLETTGGAPGARSVTEIGAVKVRGGQVLAE-FSTLVNP-GVAIPAQITMLTGITNA 79 Query: 69 FLKDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + P + F D+ + +AHNA+FDVG + + + +P + Sbjct: 80 MVAGAPGVRTCVEAFLDWADLLADDVILVAHNARFDVGHLRGAAAAVGLEWPEPRVLDTL 139 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 R S + + R H AL D+ DV + + + Sbjct: 140 ALARRAWTRSEVPNHKLGTLAAFVGSQTRPTHRALDDARATVDVLHAALEVMAPLGVTHL 199 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211 + S L P Sbjct: 200 EDLSTASDPVPARRRAKSRLADALP 224 >gi|329901259|ref|ZP_08272784.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] gi|327549191|gb|EGF33783.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] Length = 462 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 8/164 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R D+ETTG + DRI E+G VE+ + R + + P+ R L GI++ Sbjct: 9 RLAFVDLETTGATAVIDRITEVGIVEVDEDGV--RHWSSLVNPH-RHIPEFIEGLTGISN 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P F + +E ++AHNA+FD GF+ E +R+ D ++ T+ Sbjct: 66 AMVADAPGFDELAAEIHQRLEG--RIFLAHNARFDHGFLKNEFKRVGID--FRPTVLCTV 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ++R+ +P +H AL D+ L+ + Sbjct: 122 KLSRKLYPEFAKHNLDTLAERHQL-QVTERHRALGDAQLIWQFW 164 >gi|290963218|ref|YP_003494400.1| exonuclease [Streptomyces scabiei 87.22] gi|260652744|emb|CBG75877.1| putative exonuclease [Streptomyces scabiei 87.22] Length = 215 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCP 50 V D+ETTGLD + D II +GAV + + +F + P Sbjct: 23 YCVIDLETTGLDLRRDEIISVGAVPVREGRIDLGDSFYSLVRP 65 >gi|332140721|ref|YP_004426459.1| ribonuclease T [Alteromonas macleodii str. 'Deep ecotype'] gi|327550743|gb|AEA97461.1| ribonuclease T [Alteromonas macleodii str. 'Deep ecotype'] Length = 210 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 74/193 (38%), Gaps = 13/193 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++ D ++E+ A V++ D + TF + P G P AL+ +G Sbjct: 18 VVIDVETAGFNAGTDALLELAAVTVKMDDDGILHPDETFHYHIDPFEGANLEPAALEFNG 77 Query: 65 ITDE--------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + Q + +AHNA FD F+NA ++R N Sbjct: 78 IDPNCALRGAIEESEAMKDLCKGIRKAQKNAGCQRSVIVAHNATFDQSFVNAAIERCNIK 137 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + + L C+ GI H AL D+ ++++ M+ Sbjct: 138 RTPFHPFVSFDTTSLAGLALGQTVLVKACRAAGIAFDQSEAHSALYDAQKTTELFCFMVN 197 Query: 177 GGSQINFGFKTNE 189 + N+ Sbjct: 198 RYKALGGWPVEND 210 >gi|312891424|ref|ZP_07750941.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter paludis DSM 18603] gi|311296118|gb|EFQ73270.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter paludis DSM 18603] Length = 380 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 7/185 (3%) Query: 1 MIRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 +++ N R + F D+ETTG + DRI+EI ++L T+ + P S E+ Sbjct: 20 IMKLNLKRPLAFFDLETTGTNIGVDRIVEISVIKLNPDG-TDDVKTWKINPE-MPISIES 77 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGI +E L D P F + +E DF + + N + L+ + ++ Sbjct: 78 SMIHGIYEEHLIDAPVFKTAAAEISDFIADSDLAGYNSNRFDIPMLMEEFLRVGHPFDIE 137 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ID +I + ++ + H A D+ +V + + Sbjct: 138 QRHFIDVQNIFHQ----MEQRTLRAAYQFYCGKDIINAHSAEADTRATMEVLLAQVAKYE 193 Query: 180 QINFG 184 + F Sbjct: 194 GVEFE 198 >gi|313679706|ref|YP_004057445.1| DNA-directed DNA polymerase [Oceanithermus profundus DSM 14977] gi|313152421|gb|ADR36272.1| DNA-directed DNA polymerase [Oceanithermus profundus DSM 14977] Length = 252 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 6/165 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + IIEI + + F + P G P +L GI+ Sbjct: 79 VVLDLETTGLSPSENEIIEIALMRVEPGRV--ERFARLVNP-GSPIPPFITRLTGISSAD 135 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P + E + A + NA FD+GF+ + I Sbjct: 136 VADAPDVYTALEEALPYLEG--AVLVIQNAPFDLGFLR-PRACRLGVKIHNEVIDTVQWA 192 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R R L+ L + + ++I ++H AL D V +M Sbjct: 193 RRALPRMRRRGLDHLIRAFEVSIETGARHRALGDVEATWTVAREM 237 >gi|156303079|ref|XP_001617467.1| hypothetical protein NEMVEDRAFT_v1g226058 [Nematostella vectensis] gi|156193984|gb|EDO25367.1| predicted protein [Nematostella vectensis] Length = 256 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 77/204 (37%), Gaps = 8/204 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG+D DRI+EI ++ + +K ++T+ + P P+ +HGITDE Sbjct: 11 FFDLETTGIDVARDRIVEISVFKVFPNGNKESKTW--LVNP-TIPIPPQTTAVHGITDEK 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P+F+ + ++ + + + L+ + +D +I Sbjct: 68 VANEPTFNELAPHVYNMIKDSDLAGFNSDRFDIPLLAEELLRAGVDFDMKNRVSVDVQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + S ++ S + H A D+ ++ + + K Sbjct: 128 FHK----KEERTLSAAYKFYCNQSLENAHSAEADTMATYEILKAQLDRYEDLENDMKLLS 183 Query: 190 DRFFKEEKKTVPNISLLKRDKPLF 213 + +++ L ++ Sbjct: 184 EYTTRKKTVDFAGFITLNKEGKEV 207 >gi|163755942|ref|ZP_02163059.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1] gi|161324113|gb|EDP95445.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1] Length = 257 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 80/222 (36%), Gaps = 19/222 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG++ DRI+EI +++ + +K ++T+ + P E ++HGITD+ Sbjct: 11 FFDLETTGVEVAKDRIVEIAILKVYPNGNKESKTW--LVNPE-MPIPAETSEIHGITDDK 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P+F + E ++ + + + + + + +D Sbjct: 68 VANEPTFKELSKEIYNMIKDSDLAGYNSDRFDI----PLLAEELLRADIDFDMKNKVSID 123 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + S ++ HGA D++ +V + ++ K Sbjct: 124 VQTIFHKMEKRTLSAAYKFYCGKELEGAHGAEADTNATYEVLKSQLDRYDELENDVKKLS 183 Query: 190 D-----------RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + F +K S K ++ EE Sbjct: 184 EFTTRKKTADFAGFIIFDKDGEEIFSFGKHKGKKVAKVLDEE 225 >gi|94312850|ref|YP_586059.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34] gi|93356702|gb|ABF10790.1| DNA polymerase III, epsilon subunit [Cupriavidus metallidurans CH34] Length = 530 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 6/105 (5%) Query: 8 RKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IVF D+ETTG D++ DRI EIG VE+ + + + P P L GIT Sbjct: 33 RPIVFVDLETTGADAQRDRITEIGVVEVGPDGI--QEWDTLVDP-LTSIPPFVQGLTGIT 89 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 DE ++ +P+F+ I + ++AHNA+FD GF+ E + Sbjct: 90 DEMVRGQPTFALIAEALAEKLQG--RLFVAHNARFDYGFLKNEFR 132 >gi|257439598|ref|ZP_05615353.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii A2-165] gi|257197965|gb|EEU96249.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii A2-165] Length = 1417 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 80/221 (36%), Gaps = 10/221 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD ETTGLD + + EIGAV + + F F+ P G+ +P+ +L GIT+E + Sbjct: 399 VFDTETTGLDPGVEYLTEIGAVIVRNGEVV-EEFDTFVKP-GKPITPKITELTGITNEMV 456 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D P F +AHNA + + +P+ I Sbjct: 457 ADAPGEKEALEAFLR--FADGRILVAHNAHAFDIRFLKAAAKRSGISFEPTYIDTLTMAQ 514 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ----INFGFK 186 ++ K + H A DS L ++ M+ ++ G Sbjct: 515 AMYPGLHNYKQGTINKHLELP--SYEAHRACEDSAALGRIFCVMLSDLAEKEVTTVEGIN 572 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 T + KK ++ +L +++ + K + H Sbjct: 573 TGLGGNREVLKKKYFHLIILVKNQMGLKNLYKIVSEAHVNY 613 >gi|227431886|ref|ZP_03913909.1| DNA-directed DNA polymerase III epsilon subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352353|gb|EEJ42556.1| DNA-directed DNA polymerase III epsilon subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 797 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 3/167 (1%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTG K RII+IG + F+ F+ P G+ + +L I+ Sbjct: 7 FVVVDLETTGHSVKKGGRIIQIGMTFIKKRQIV-DHFESFVNP-GQLIDRQIQQLTHISQ 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +++ P F I + N + E + Sbjct: 65 KDVQNAPYFEEIAPLLQNLLQNTVIIAHNVNFDYPYLNDEFERTGFQLLKSAAIDTVQLA 124 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I P R + + +HR+ A + L + K+ Sbjct: 125 QILFPMAPGYRLLDLTTYLNITLKNAHRANADAHATALLFLKFWKKL 171 >gi|225017584|ref|ZP_03706776.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum DSM 5476] gi|224949644|gb|EEG30853.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum DSM 5476] Length = 865 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 78/212 (36%), Gaps = 10/212 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+E+TG D+ +D II+I AV + + + R+F+ L P + Sbjct: 498 NVVVFDVESTGTDTSSDEIIQIAAVRIDETGRVLRSFEQLLHP---SKPVGQSEAVHHFS 554 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L + + A + HN FD+ + +EL R+ P + DTL Sbjct: 555 DALLAERGGEPPQVLAEFCSFVRGAVVVGHNVGFDLTILASELSRLGLPPAEYEEYYDTL 614 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +ARR +P N + + +S H A+ D DV + + Sbjct: 615 DLARRFYPDLPNHKLETLSKL-LDTEVKSSHDAMDDILATKDVLLHLTAHKLLPTL---- 669 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + ++ L R ++E Sbjct: 670 --QQRKAVYERYQGRFDKLSSTIESLRRASEE 699 >gi|332522391|ref|ZP_08398643.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus porcinus str. Jelinkova 176] gi|332313655|gb|EGJ26640.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus porcinus str. Jelinkova 176] Length = 1466 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD Sbjct: 428 YVVFDVETTGLSAINNDLIQIAASKMYKGNII-EQFDEFINP-GHPLSSFTTELTGITDN 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + F F + A +AHNA FDVGF+NA +R + + I Sbjct: 486 HLIGAKTLLQVLEAFQAFCQD--AILVAHNASFDVGFMNANYERHHLPLIKQPVIDTLEF 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 544 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKEARE 593 >gi|301058175|ref|ZP_07199227.1| exonuclease, DNA polymerase III, epsilon subunit family protein [delta proteobacterium NaphS2] gi|300447807|gb|EFK11520.1| exonuclease, DNA polymerase III, epsilon subunit family protein [delta proteobacterium NaphS2] Length = 233 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSP 57 +VFD E TGL + D II IGAV + + TF + P G+ +P Sbjct: 42 FVVFDTELTGLKQRRDEIIAIGAVRIKNARICFEDTFYALIKPQGKLYTP 91 >gi|260767723|ref|ZP_05876658.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] gi|260617232|gb|EEX42416.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] Length = 222 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 7/168 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 DIET+GLD+++D I+ IG V +++ + P+G+ + + + H + Sbjct: 35 LDIETSGLDAEHDHIVSIGWVPIVNQVIRLAEARYFLITPSGQNDPQQVVLHHIMPQMQR 94 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P + + + + + P+ + Sbjct: 95 QGIP-LAQAIELLFTQLKGKVLLAHGSVVERQFIHHFMQQHGWPDLPIVWLDTLKIEQAY 153 Query: 131 RRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P + N+ R + H AL D+ +++Y+ Sbjct: 154 AQYAPYNMPHSNANDWRLSTVRKRYHLPAYQAHHALSDAIATAELYLA 201 >gi|171315543|ref|ZP_02904779.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] gi|171099380|gb|EDT44118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] Length = 375 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 8/165 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG S RI EIG VE+ + T+ + P G+ P +L GI+DE Sbjct: 16 VFVDLETTGGSSAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQSIPPFIQQLTGISDEM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+S+ ++ + ++AHNA FD GF+ AE R Sbjct: 73 VRDAPSFASLAPTLFERLDG--KLFVAHNASFDRGFLRAEFDRAGIAFNPDVLCT-VRLS 129 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R+ L++L +R+G+ ++H AL D+ LL + ++ Sbjct: 130 RALFPREARHGLDALIERHGLV--PAARHRALADADLLWQFWRQL 172 >gi|325286607|ref|YP_004262397.1| DNA polymerase III subunit alpha [Cellulophaga lytica DSM 7489] gi|324322061|gb|ADY29526.1| DNA polymerase III, alpha subunit [Cellulophaga lytica DSM 7489] Length = 1479 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 36/250 (14%), Positives = 74/250 (29%), Gaps = 31/250 (12%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + D R I+I D + P+G + Sbjct: 2 YLIFDTETTGLPKRWDAPYTDTDNWPRCIQIAWQLHDDMGNVIEHQDYLVKPDGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A K+HGI+ + + E ++ E+ + N FD+ + AE R+ + Sbjct: 62 AEKIHGISTALAEQDGVPLAEVLEKFNTALEKTKFVVGQNVGFDLNIMGAEFHRLQVENQ 121 Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + ++ H A D + Sbjct: 122 LQELPVLDTCTEHTASLCQIPGGRGGKFKLPTLTELHQFLFGEPFGEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 +++++ D F + I L+ + + + Sbjct: 182 CFLELIRKQQYTAEQLDVQPDYFKNFSEANPKPIELIGLKHINLKKAS-----------K 230 Query: 230 TLGKNAIWDR 239 + +A+W + Sbjct: 231 KIA-DALWAK 239 >gi|108759005|ref|YP_633932.1| exonuclease [Myxococcus xanthus DK 1622] gi|108462885|gb|ABF88070.1| exonuclease [Myxococcus xanthus DK 1622] Length = 988 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 4/119 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + D+ETTGLD + D +IE+G + + + R F R +L G+TD Sbjct: 10 RHVFLDLETTGLDPRVDEVIELGCIFFENGREVER-FARLY-SASRPLPLTIRRLTGLTD 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ P F + +E + + AHNA F+ GF+ L I+ LD ++ Sbjct: 68 ADLEGHPRFGTDIAELREKLSGWTVV--AHNAPFEKGFLPDLLGPIHAPVLDSCELMHY 124 >gi|167586484|ref|ZP_02378872.1| DNA polymerase III, epsilon subunit [Burkholderia ubonensis Bu] Length = 375 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 8/165 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG S RI EIG VE+ + T+ + P G+ P +L GI+D Sbjct: 16 VFVDLETTGGSSAEHRITEIGVVEIGPLGVS--TWTSLVNP-GQPIPPFIQQLTGISDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+S+ ++ + ++AHNA FD GF+ AE +RI Sbjct: 73 VRDAPSFASLAPALFERLDG--KLFVAHNASFDRGFLRAEFERIGLAFNPDVLCT-VRLS 129 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 SR+ L++L +R+G+ ++H AL D+ LL + ++ Sbjct: 130 RALFPRESRHGLDALIERHGLV--PSARHRALADADLLWQFWRQL 172 >gi|86140827|ref|ZP_01059386.1| DNA polymerase III, epsilon subunit [Leeuwenhoekiella blandensis MED217] gi|85832769|gb|EAQ51218.1| DNA polymerase III, epsilon subunit [Leeuwenhoekiella blandensis MED217] Length = 221 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 78/175 (44%), Gaps = 12/175 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 R +VFD ETTG +++ DR++ IGA+EL + + +F++++ A+ Sbjct: 35 RFVVFDTETTGTNAREDRMLSIGALELKGNKISLSSSFELYVKQEVFNEEAVAIHGILRE 94 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR---- 122 + K ++ + +A + H+ FD+G IN L+R+ L Sbjct: 95 NRKYKKVSEEEAVKAFLE---FIGDAILVGHHVGFDIGIINYALKRLGAPKLKNKFTDTG 151 Query: 123 --IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ + P+ L+ LC+ I +H A+ D+++ + ++K+M Sbjct: 152 VLYKRTVHLVNITDPNKVYTLDDLCEELNIA--KTDRHKAMGDAYITALAFLKVM 204 >gi|329929369|ref|ZP_08283117.1| exonuclease, DNA polymerase III, epsilon subunit family [Paenibacillus sp. HGF5] gi|328936456|gb|EGG32901.1| exonuclease, DNA polymerase III, epsilon subunit family [Paenibacillus sp. HGF5] Length = 246 Score = 63.0 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 7/172 (4%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTG + + D I+ GA+ ++ TF + + +G SP +L GIT Sbjct: 62 VVFDLETTGFNHQHGDEILSFGAIRVIGEQVIENETFHMIVN-SGAPVSPFIAELTGITQ 120 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P +F F +AH A D GF+NA L + +K L + + Sbjct: 121 QMVDAAPPLMEGLHDFMAFIGG--RVLVAHAAAHDRGFLNAALWKTSKVRLTHRLLDTMM 178 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 R L+ L + GI +H AL D+ + + ++ M Sbjct: 179 LAQRLYPEQKDYSLDELLRSSGIP--VEGRHHALSDARMTARLWADYMKDIQ 228 >gi|261408383|ref|YP_003244624.1| hypothetical protein GYMC10_4596 [Paenibacillus sp. Y412MC10] gi|261284846|gb|ACX66817.1| DNA polymerase III, epsilon subunit [Paenibacillus sp. Y412MC10] Length = 246 Score = 63.0 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 7/172 (4%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTG + + D I+ GA+ ++ TF + + +G SP +L GIT Sbjct: 62 VVFDLETTGFNHQHGDEILSFGAIRVIGEQVIENETFHMIVN-SGAPVSPFIAELTGITQ 120 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P +F F +AH A D GF+NA L + +K L + + Sbjct: 121 QMVDAAPPLMEGLHDFMAFIGG--RVLVAHAAAHDRGFLNAALWKTSKVRLTHRLLDTMM 178 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 R L+ L + GI +H AL D+ + + ++ M Sbjct: 179 LAQRLYPEQKDYSLDELLRSSGIP--VEGRHHALSDARMTARLWADYMKDIQ 228 >gi|21673865|ref|NP_661930.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS] gi|21647000|gb|AAM72272.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS] Length = 232 Score = 63.0 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 66/183 (36%), Gaps = 8/183 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPN-----GRKNSPEALK 61 R ++FD ET+G D DRI+ IGAV + + +F+V L + LK Sbjct: 44 RFVIFDTETSGFDLVKDRILSIGAVSMKGSTIDIADSFEVLLRQEAIGGKDAVSVHGILK 103 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + + IA + +L D + Sbjct: 104 RDLTQGMEEGEAVCRFLDYLGNGVIVAHHADFDIAMVNRVLSQRYGIKLLNEALDTASFA 163 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + ++ H S L++LC RYG I +H + D++L + ++ +++ G + Sbjct: 164 KRLEKGPYYNLAHKSGEYRLDNLCARYG--ICLYDRHTSAGDAYLTAQLFQRLLAVGRKA 221 Query: 182 NFG 184 Sbjct: 222 GID 224 >gi|313618186|gb|EFR90268.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria innocua FSL S4-378] Length = 931 Score = 63.0 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + K R IV D+ETTG + + DRII+ A + + T+ FL P + Sbjct: 1 MEQMKKKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYSTFLNPE-KPIPAFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 +L GI+ + +K+ P F + + ++AHN FD F+ E+ Sbjct: 59 QELTGISPKDVKNAPLFEDVAPIIASLLED--TIFVAHNVSFDWTFLEREM 107 >gi|227873963|ref|ZP_03992179.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268] gi|227840171|gb|EEJ50585.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268] Length = 178 Score = 63.0 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 9/175 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R IVFD+ET + KN+RI IG + + + + F + P +KL GI+ Sbjct: 3 RFIVFDVET--PNRKNNRISAIGITVVEEGKIS-KEFYSLVNPETN-FDYFNVKLTGISK 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +KD P+F ++ + F++ +AHNA FD+ + L D +R + T+ Sbjct: 59 ASVKDAPTFPELWQQIEPLFSDGM--LVAHNASFDMNVLKNCLLDYEIDWKPYARYLCTV 116 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + R P + LN +C+ +G H A DSH +++ ++ + G+++ Sbjct: 117 KMGRSLFPDRSHKLNMVCEDFG---ISLQHHRADSDSHACAEILLRYLEAGAEVK 168 >gi|312865553|ref|ZP_07725780.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus downei F0415] gi|311099071|gb|EFQ57288.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus downei F0415] Length = 1468 Score = 63.0 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + ++ F F+ P G S L GITD Sbjct: 430 YVVFDVETTGLSAVNNSLIQIAASKMHKGNIIDQ-FDEFINP-GHPLSQFTTDLTGITDN 487 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD + EF +F + +AHNA FDVGF+NA +R + + I Sbjct: 488 HLKDAKPLLQVLEEFQEFCQD--TVLVAHNATFDVGFMNANYERHDLPLISQPVIDTLEF 545 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ + + H H A D+ + + + Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALDH--HHMANYDAEATGRLLFIFIKEARE 595 >gi|312960550|ref|ZP_07775056.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6] gi|311285076|gb|EFQ63651.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6] Length = 142 Score = 63.0 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 7/127 (5%) Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + Sbjct: 12 HCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQT 71 Query: 180 QINFGFKTNEDRFFKEEKKTVP---NISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-- 234 ++ ++ E P R R +++++ EH ++ + K+ Sbjct: 72 SLSLAGNASDGSGSAEGSGNRPSEIRRLPADRKPTTIIRASEQDMAEHAARLEAIAKSAG 131 Query: 235 --AIWDR 239 A+W + Sbjct: 132 APALWTQ 138 >gi|296119762|ref|ZP_06838316.1| putative DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes DSM 20306] gi|295966916|gb|EFG80187.1| putative DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes DSM 20306] Length = 1149 Score = 63.0 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 8/124 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + NK V D E TGL + DRI+EIG V L + + +T+ + PN Sbjct: 1 MSQHNK--FAVVDFEATGLSAA-DRIVEIGVVLLDNNLEVEQTWDTLVQPNREVP---NS 54 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +H +T L+ P+F I ++F + + AHNA F+ F+ E R+ + Sbjct: 55 FVHKLTTADLEKAPTFEGISAKFASLLDGRTVV--AHNASFEEHFMRQEFSRLGVLWPNY 112 Query: 121 SRII 124 I Sbjct: 113 GSWI 116 >gi|261369077|ref|ZP_05981960.1| putative DNA polymerase III, epsilon subunit [Subdoligranulum variabile DSM 15176] gi|282568762|gb|EFB74297.1| putative DNA polymerase III, epsilon subunit [Subdoligranulum variabile DSM 15176] Length = 318 Score = 63.0 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 7/166 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIETTGLD D I+++ +++ ++ P ++ PEA +++ IT E Sbjct: 120 VSIDIETTGLDFNQDEILQVSILDIDTGEVL---LDSYVKPYFTEDWPEARRVNHITKEM 176 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE----WIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + P + + + + F + + + L Sbjct: 177 VCNAPYIYELLPRLNQVLAQVKTIVGYNFTGFDNGFLTRYGASFNDETIVEDLSNIFAAI 236 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + +L++ +G + H +L D + Y Sbjct: 237 YGEFSPKHGDFKFKNLSTCADYFGYDWGEETAHNSLADCRATAFCY 282 >gi|261493343|ref|ZP_05989869.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310987|gb|EEY12164.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 221 Score = 63.0 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET GL+++ D ++E+ A+ + Y ++ + P G +PE+LK +G Sbjct: 31 VVIDVETAGLNAQTDALLELAAITVKMDENGYLVEDQKCHFHIKPFEGANINPESLKFNG 90 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + P + Q A +AHNA FD GF+ A ++RIN Sbjct: 91 IDIDNPLRGAVAENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQGFLQAAVKRINAK 150 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I+ H AL D+ ++++ M+ Sbjct: 151 RDPFHPFAMFDTATLAGFMYGQTVLVKACQAAQISFDGHQAHCALYDTEKTTELFCAMVN 210 Query: 177 GGSQIN 182 + Sbjct: 211 KLKDLG 216 >gi|217970248|ref|YP_002355482.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|217507575|gb|ACK54586.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 203 Score = 63.0 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 6/103 (5%) Query: 7 MRKI-VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M + V D ETTGL + DR EI AV + D +R +Q + G + L G Sbjct: 1 MEAVAVIDFETTGLSPAQGDRATEIAAVIVRDGRVVDR-YQSLMN-AGVRIPAHIESLTG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 I++ ++ P+ + + E DF AHNA FD F + Sbjct: 59 ISNAMIRSAPTAAQVMREVADFIGGIPMV--AHNAAFDAKFWD 99 >gi|158313649|ref|YP_001506157.1| hypothetical protein Franean1_1813 [Frankia sp. EAN1pec] gi|158109054|gb|ABW11251.1| DNA polymerase III, epsilon subunit [Frankia sp. EAN1pec] Length = 603 Score = 63.0 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 40/114 (35%), Gaps = 4/114 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG I EIGAV + + P L GIT Sbjct: 29 FVVVDLETTGGSPATSEITEIGAVRVRGGQILGEM-SSLVRP-SAPIPAFISVLTGITGA 86 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + P + F + + A +AHNA FD+GF+ A Sbjct: 87 MVATAPGIGEVVPTFLE--FARGAVLVAHNAPFDLGFLRAAATACGYPAPAWEH 138 >gi|283456242|ref|YP_003360806.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1] gi|283102876|gb|ADB09982.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1] Length = 317 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 9/175 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D ETTGL+ + DR IEIG V + + + A +H I+ Sbjct: 6 YAVVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLIR---VHRDIGAQWIHHISA 62 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L P F I E D ++AHN FD F+ +E + + + Sbjct: 63 VELIHAPEFEGIARELRDLLAG--RVFVAHNVAFDSKFLLSEYR-RLGTDIPVNSHTMLC 119 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++ + L C+ +GI + H AL D+H + + ++M + + Sbjct: 120 TMKLSRSLIGVGSLADCCREFGID--NEDAHSALSDAHATALLLGRLMDADPEWS 172 >gi|255010437|ref|ZP_05282563.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis 3_1_12] gi|313148241|ref|ZP_07810434.1| DNA Pol III epsilon chain [Bacteroides fragilis 3_1_12] gi|313137008|gb|EFR54368.1| DNA Pol III epsilon chain [Bacteroides fragilis 3_1_12] Length = 257 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 65/172 (37%), Gaps = 8/172 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + +DRI+EI +++ + ++ ++T + + P E+ +HGI D Sbjct: 10 VFFDLETTGTNINSDRIVEICYLKVYPNGNEESKTLR--INPE-MPIPAESSAVHGIFDA 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + + + N L+ + + +D Sbjct: 67 DVADCPTFKEVAKSIANDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMSKRKFVDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I + S ++ + H A D+ +V + + + Sbjct: 127 IFHK----MEQRTLSAAYKFYCGRNLEDAHTAEADTRATYEVLMAQLDRYPE 174 >gi|126664190|ref|ZP_01735182.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38] gi|126623722|gb|EAZ94418.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38] Length = 202 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/38 (50%), Positives = 25/38 (65%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 + K R +VFD ETTGLD K+DRI+ IGAV + + Sbjct: 28 QNKKKRYVVFDCETTGLDYKSDRILSIGAVAIENNQII 65 >gi|290579638|ref|YP_003484030.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025] gi|254996537|dbj|BAH87138.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025] Length = 1470 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 13/211 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S L GITD+ Sbjct: 430 YVVFDVETTGLSAINNDLIQIAASKMHKGNIV-EQFDEFIDP-GHPLSQFTTDLTGITDQ 487 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + EF F + +AHNA FDVGF+NA +R + + I Sbjct: 488 HVKGAKPILQVLQEFQSFCQD--TVLVAHNATFDVGFMNANYERHDLPKITQPVIDTLEF 545 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-------I 181 R+ L L KR+ +++ H H A D+ + + + + Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEAKEKHGVNNLL 603 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 + K ++ +K+ + I +L + Sbjct: 604 DLNTKIVDNNSYKKARVKHATIYVLNQKGLK 634 >gi|297571327|ref|YP_003697101.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum DSM 20595] gi|296931674|gb|ADH92482.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum DSM 20595] Length = 597 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 63/175 (36%), Gaps = 3/175 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + EIGAV++ + F + P G +L GIT Sbjct: 47 FLVVDVETTGEKPGLHSLTEIGAVKVRGGTVIGE-FGSLVNP-GVPIPAFITRLTGITTG 104 Query: 69 FLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + PS + F +F + + ++AHNA FD+G + + + I Sbjct: 105 MVATAPSLGEVLVSFIEFVGGDPDLIFVAHNAPFDMGQLRGAASALGLAFPNRKVIDTVK 164 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R + + + H AL D+ DV ++ + Sbjct: 165 LSRRVFMKDEVPNHKLSTLARFVNATISPSHRALDDARATVDVLHAILGRLGSLG 219 >gi|153820610|ref|ZP_01973277.1| DNA polymerase III epsilon subunit [Vibrio cholerae NCTC 8457] gi|126508846|gb|EAZ71440.1| DNA polymerase III epsilon subunit [Vibrio cholerae NCTC 8457] Length = 136 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 5/121 (4%) Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G + Sbjct: 18 FCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQT 77 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIW 237 + F T E +R + +EL H + + K+ +W Sbjct: 78 SLQFSSVTQNSGELSAESLKRAR---SERKALKVLAASADELQAHQDRLDIVAKSGTCLW 134 Query: 238 D 238 Sbjct: 135 R 135 >gi|125549801|gb|EAY95623.1| hypothetical protein OsI_17478 [Oryza sativa Indica Group] Length = 260 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 75/201 (37%), Gaps = 16/201 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTG K+ RI+E +L N TF+ + P R L I + + Sbjct: 64 VFDLETTGYFHKDHRIVEFALCDLSGGK--NSTFETLVNPE-RTVPDYVQHLIKIGTDLV 120 Query: 71 KDK--PSFSSIFSEFWDFFNEQNAE-----WIAHN-----AKFDVGFINAELQRINKDPL 118 P FS + F + A W+AHN A+F + + D L Sbjct: 121 CRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPLPADWL 180 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++ + + + R L +L + YGI H A+ D +LS V+ KM Sbjct: 181 FFDTLLLAKKMVKAEGKKRRTSLEALREHYGIVSH-DDAHRAMRDVMILSQVFQKMTFDL 239 Query: 179 SQINFGFKTNEDRFFKEEKKT 199 N + + K + Sbjct: 240 KLTNEELINEAMKASEFSKIS 260 >gi|326335188|ref|ZP_08201385.1| exonuclease [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692718|gb|EGD34660.1| exonuclease [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 273 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 78/233 (33%), Gaps = 21/233 (9%) Query: 2 IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 + N R I FD+ETTG D DRI+EI +++ + S+ ++T+ + P + Sbjct: 17 MELNLTRPICFFDLETTGTDVSKDRIVEISILKVFPNGSRESKTW--LVNP-TIPIPAAS 73 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGI+D+ + P+F + + + + + + L+ L Sbjct: 74 TDIHGISDKMVAQAPTFKELAKQIHNLIKDSDLAGYNSDRFDIPLLAEELLRAGVDFDLK 133 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +D +I + S ++ S + H A D+ ++ + S Sbjct: 134 NRVTVDVQTIFHK----MEQRTLSAAYKFYCKKSLDNAHSAQADTDATYEILKAQLDCYS 189 Query: 180 QINFGFK------------TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + F K + K I +EE Sbjct: 190 DTLPNDVKQLSDFTTRKQIADFAGFIAYNDKGEEIFTFGKHKGRKVEEILEEE 242 >gi|255690064|ref|ZP_05413739.1| exonuclease [Bacteroides finegoldii DSM 17565] gi|260624341|gb|EEX47212.1| exonuclease [Bacteroides finegoldii DSM 17565] Length = 259 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 8/191 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + DRI+EI +++ + ++ ++T + + P + +HGI D Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKVYPNGNEESKTLR--INPEMH-IPEASSAVHGIYDA 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + + N L+ + + +D Sbjct: 67 DVADCPTFKEVAKSIARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMTKRKFVDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + S ++ + H A D+ +V + ++ Sbjct: 127 IFHK----MEQRTLSAAYKFYCEKNLEDAHTAEADTRATYEVLKAQLDRYDELQNDIAFL 182 Query: 189 EDRFFKEEKKT 199 D + Sbjct: 183 ADYSSYSKNVD 193 >gi|308234071|ref|ZP_07664808.1| DNA polymerase III, epsilon subunit [Atopobium vaginae DSM 15829] Length = 1008 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 7/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL KND++ +I AV+L + F F+ P R KL I Sbjct: 51 VALDTETTGLSHKNDQLTQIAAVKLEEG-SVADEFTTFVNP-SRPIPHNIEKLTNIYSVD 108 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+ + + DF +AHNA FD FI A + + Sbjct: 109 VEHAPTPQTAVARLADFVEL--DPILAHNASFDRAFIEAAQNDTCVSDTWIDTLALSRIA 166 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + L L +G + + + Sbjct: 167 FPA---LTSHKLQDLAYIFGCESVTHRANDDCTALAGVWHYILA 207 >gi|328943468|ref|ZP_08240933.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829] gi|327491437|gb|EGF23211.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829] Length = 1011 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 7/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL KND++ +I AV+L + F F+ P R KL I Sbjct: 54 VALDTETTGLSHKNDQLTQIAAVKLEEG-SVADEFTTFVNP-SRPIPHNIEKLTNIYSVD 111 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+ + + DF +AHNA FD FI A + + Sbjct: 112 VEHAPTPQTAVARLADFVEL--DPILAHNASFDRAFIEAAQNDTCVSDTWIDTLALSRIA 169 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + L L +G + + + Sbjct: 170 FPA---LTSHKLQDLAYIFGCESVTHRANDDCTALAGVWHYILA 210 >gi|71907013|ref|YP_284600.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] gi|71846634|gb|AAZ46130.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] Length = 204 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 5/98 (5%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL + DR EI AV L + +R +Q + G + +L GI++ Sbjct: 6 VIDFETTGLSPAQGDRATEIAAVILENGKVVDR-YQSLMN-AGVRIPSFIEQLTGISNAM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ++ P + + E DF + +AHNA FD F + Sbjct: 64 IRSAPPAAQVMREVSDFVGD--IPLVAHNASFDCKFWD 99 >gi|15616394|ref|NP_244699.1| hypothetical protein BH3832 [Bacillus halodurans C-125] gi|10176457|dbj|BAB07551.1| BH3832 [Bacillus halodurans C-125] Length = 265 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 8/177 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ET+G + DRI+ IGAV+++ + TF + L+L G++ Sbjct: 81 VVFDLETSGFYPDQGDRILSIGAVKVVGLTIQEEETFYSVVH-TDTVPPENILELTGLSV 139 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L+ P +S+ F+ F + + + R+IDT Sbjct: 140 EELEAAPPLTSVLESFYAFIRHSTLVA---HHASHEKAFMSHVTWQTMKLPFEHRVIDTS 196 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + + P L+ C Y +I +++H A DS + + ++I + + F Sbjct: 197 FLTKIVAPQELVTLDDCCAYY--SIPVQNRHHAFEDSLMTAKLWIAAIAAAREAGFE 251 >gi|262379336|ref|ZP_06072492.1| ribonuclease T [Acinetobacter radioresistens SH164] gi|262298793|gb|EEY86706.1| ribonuclease T [Acinetobacter radioresistens SH164] Length = 219 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 64/197 (32%), Gaps = 16/197 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54 +V D+ET G +++ D ++EI + ++ + + P + Sbjct: 23 VVVDVETAGFNAQTDALLEIACIPIIYDEEGKFIPGPAYHAHINPFEGANLDRRSLDFIG 82 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P + ++ + +A + HNA FD+GF+ A + R Sbjct: 83 VDPFNPMRMAMAEDEKTALKRIFKSIHDIRREQLCTHAILVGHNAHFDLGFLQAAINRSG 142 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P + + C + GI + H AL D+ ++++ Sbjct: 143 TKNQNPFHSFSVFDTVTLSALMFGQTVLAKSCLQAGIEFDGKEAHSALYDTQKTAELFCY 202 Query: 174 MMVGGSQINFGFKTNED 190 ++ + + Sbjct: 203 ILNKLAPQLLDTLVADQ 219 >gi|255320382|ref|ZP_05361566.1| ribonuclease T [Acinetobacter radioresistens SK82] gi|255302577|gb|EET81810.1| ribonuclease T [Acinetobacter radioresistens SK82] Length = 215 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 64/197 (32%), Gaps = 16/197 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54 +V D+ET G +++ D ++EI + ++ + + P + Sbjct: 19 VVVDVETAGFNAQTDALLEIACIPIIYDEEGKFIPGPAYHAHINPFEGANLDRRSLDFIG 78 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P + ++ + +A + HNA FD+GF+ A + R Sbjct: 79 VDPFNPMRMAMAEDEKTALKRIFKSIHDIRREQLCTHAILVGHNAHFDLGFLQAAINRSG 138 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P + + C + GI + H AL D+ ++++ Sbjct: 139 TKNQNPFHSFSVFDTVTLSALMFGQTVLAKSCLQAGIEFDGKEAHSALYDTQKTAELFCY 198 Query: 174 MMVGGSQINFGFKTNED 190 ++ + + Sbjct: 199 ILNKLAPQLLDTLVADQ 215 >gi|253989411|ref|YP_003040767.1| ribonuclease T [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780861|emb|CAQ84023.1| ribonuclease T [Photorhabdus asymbiotica] Length = 217 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 74/186 (39%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ ++ D + + + P G P AL+ G Sbjct: 20 VVIDVETGGFNAKTDALLEIAAITLKMDDEGWITPDESLHFHIEPFEGANLEPAALEFTG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + + A +AHNA FD GF+ A +R Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKNSHCNRAIIVAHNANFDHGFVMAAAERARLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C G++ + H AL D++ ++++ +M+ Sbjct: 140 RNPFHPFATFDTAALGGLVLGQTILAKACITAGVSFDNNQAHSALYDTNRTAELFCEMVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|154343419|ref|XP_001567655.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania braziliensis MHOM/BR/75/M2904] gi|134064987|emb|CAM43098.1| exonuclease-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 292 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 82/234 (35%), Gaps = 63/234 (26%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLD---------------------------YSKT-- 40 +V D+ETTG D I+E+G VEL Sbjct: 53 VVVDLETTGFSPTADEILEVGCVELRWTPSSRTTLTGPKDADPCAPPLEKQGSCGVLEGL 112 Query: 41 ----NRTFQVFLCP-NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE------ 89 R F ++ P + R+ + A +HGIT E ++ + + SE + Sbjct: 113 WTRGGRVFHRYVRPSHPRRITAAATAVHGITWEKVQHCAPWPVVASELVAYMTLIRADAL 172 Query: 90 ------------------QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTLSI 129 +AHNA FD F+ LQR + T Sbjct: 173 FTKSVQVEAAQHGGHSAVHLPPLVAHNALFDARFLAHHLQRCGYQIFWHPQYPLTCTRQW 232 Query: 130 ARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 A+ +P N+L++LC G + HGAL D+ L + ++++M ++ Sbjct: 233 AQVAYPHLANNLDTLCAFLSIDGAADRATNGHGALTDATLTALLFLRMCCRWTE 286 >gi|326576077|gb|EGE25996.1| DNA polymerase III subunit epsilon [Moraxella catarrhalis O35E] Length = 120 Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + FD ETT LD +II IGAV++ + T+ TF++ + P G + Sbjct: 31 VSFDCETTSLDISEAQIISIGAVKIRGNRILTSETFEILIKPEGMIQATNVTIHG 85 >gi|241763877|ref|ZP_04761921.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] gi|241366845|gb|EER61267.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] Length = 219 Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51 + D ETTGL+ ++D II IGAV + + T+ ++ + P+ Sbjct: 42 WVALDCETTGLNVRSDEIIAIGAVRIAGNRILTSERLELLVRPD 85 >gi|116491119|ref|YP_810663.1| Rad3-related DNA helicase [Oenococcus oeni PSU-1] gi|118586913|ref|ZP_01544346.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163] gi|290890627|ref|ZP_06553698.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429] gi|116091844|gb|ABJ56998.1| 3'-5' exonuclease domain and Rad3-related DNA helicase [Oenococcus oeni PSU-1] gi|118432640|gb|EAV39373.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163] gi|290479755|gb|EFD88408.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429] Length = 489 Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 81/204 (39%), Gaps = 9/204 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETT + II+IG + ++ FQ + P G K + + L GI +E + Sbjct: 9 IVDLETTAPFKEGGHIIQIGISFVKNWKII-NNFQTMVNP-GVKIPEQIVDLTGIKNEDV 66 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ P F + D + ++AHN ++D ++N E RI L + Sbjct: 67 ENAPYFEDLARMIHDQLSG--TVFVAHNVRYDFPYLNGEFARIKMRRLRLEYVDTVQLAQ 124 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFGFKT 187 + L+ L + G I+ H A D+ + +++ + + Q Sbjct: 125 IVFPTMNSYKLDELVSKLG--INLPRHHRADQDASATAQLFLKIHEHLQEFPQNTLNNLI 182 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 N + +T+ +S KR P Sbjct: 183 NHSKSLLGNTETIFQLSKGKRTFP 206 >gi|238855548|ref|ZP_04645851.1| DNA polymerase III [Lactobacillus jensenii 269-3] gi|260665137|ref|ZP_05865987.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US] gi|282932326|ref|ZP_06337761.1| DNA polymerase III [Lactobacillus jensenii 208-1] gi|238831832|gb|EEQ24166.1| DNA polymerase III [Lactobacillus jensenii 269-3] gi|260561191|gb|EEX27165.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US] gi|281303547|gb|EFA95714.1| DNA polymerase III [Lactobacillus jensenii 208-1] Length = 316 Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 1/138 (0%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 DIETTGL DR+ E+ +++ + ++ + + P+ + DE L Sbjct: 38 LDIETTGLSPYRDRVTELAGIKVRNGKVVDK-YSQLVKHPKNNKVPQFITKLNGIDEKLI 96 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + + +N FD+ FI ++ N + L + I Sbjct: 97 LTQGIPVKEAITDFRNFIGEDVIVGYNVNFDLNFIYDLCEKFNLERLSNNYIDVLHFSRV 156 Query: 132 RKHPSSRNDLNSLCKRYG 149 S N L +R G Sbjct: 157 FFKKESHNRLLDCIQRLG 174 >gi|218295641|ref|ZP_03496437.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23] gi|218243800|gb|EED10327.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23] Length = 627 Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 12/174 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTGLD + D II +GAV LL + ++ + P GR + ++HG+T E Sbjct: 445 AFDLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDP-GRPIPKASTEVHGLTWEM 503 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LKDKP + F F + +AHN FD+ F+ K +D ++DTL + Sbjct: 504 LKDKPKLEEVLPAFRAFLEG--SVLVAHNGAFDMAFLR-------KVGIDQPPLVDTLLL 554 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 A P ++ + +H AL D+ + ++VY +M+ + F Sbjct: 555 AHLLFPDLKDHRLERLAER-FGVPVLGRHTALGDALMTAEVYARMIPLLKERGF 607 >gi|257792837|ref|YP_003183443.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243] gi|257476734|gb|ACV57054.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243] Length = 966 Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 9/168 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D ETTG +D + +I A + F F+ P G+ + L I D Sbjct: 9 NVVVLDTETTGFSFNHDELTQIAAARMEQGEIV-EWFITFVNP-GKPIPEDVAHLTDIHD 66 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P + ++ +F + A+ +AHNA+FD F +D Sbjct: 67 RDVADAPLPADALAKLVEFIGD--AKVVAHNAEFDRTFTTRHPSGYPLLENTWIDSLDLA 124 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IA R + L + S H A D ++ ++ Sbjct: 125 RIA-----LPRMKSHRLLDLVRAFGAPLSTHRADADVEATCAIFRILL 167 >gi|306822551|ref|ZP_07455929.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|309801474|ref|ZP_07695601.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium JCVIHMP022] gi|304554096|gb|EFM42005.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|308221989|gb|EFO78274.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium JCVIHMP022] Length = 328 Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 9/175 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D ETTGL+ + DR IEIG V + + + A +H I+ Sbjct: 17 YAVVDFETTGLNPARGDRAIEIGLVHVAPDGTLEDEHETLIR---VHRDIGAQWIHHISA 73 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L P F I E D ++AHN FD F+ +E + + + Sbjct: 74 VELIHAPEFEGIARELRDLLAG--RVFVAHNVAFDSKFLLSEYR-RLGADIPVNSHTMLC 130 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++ + L C+ +GI + H AL D+H + + ++M + + Sbjct: 131 TMKLSRSLIGVGSLADCCREFGID--NEDAHSALSDAHATALLLGRLMDADPKWS 183 >gi|21684658|gb|AAL87523.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps] Length = 212 Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 1/166 (0%) Query: 19 LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSS 78 L + R+ E+G VE+ T F ++ P ++ + A +HG+ DEFL +P+FS+ Sbjct: 1 LSPRYHRLAEVGCVEIACGRITGNYFHAYINP-RQRMTRGAQAVHGLRDEFLATQPAFSA 59 Query: 79 IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138 I F + + + +IDT+ ++ R Sbjct: 60 IAQRLLFFLCQSTLVGHNLSFDLNFLDAGLATAGFMPAARYCHGVIDTMCHLAQRGSRRR 119 Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L++ C G+ R++HGAL+D+ LL++ ++ +I + Sbjct: 120 FSLDACCDMLGVRRGDRARHGALVDAVLLAEAFVVAKRTRPKIGYN 165 >gi|288554471|ref|YP_003426406.1| hypothetical protein BpOF4_07280 [Bacillus pseudofirmus OF4] gi|288545631|gb|ADC49514.1| hypothetical protein BpOF4_07280 [Bacillus pseudofirmus OF4] Length = 245 Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 69/178 (38%), Gaps = 7/178 (3%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 IVFD+ET+G K D I+ IGAV++ +F + +S Sbjct: 59 FIVFDLETSGFFPDKGDEILSIGAVKMKGAEVLFEESFYSTVQCKKEPSSDVLSLTGLTL 118 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E +P + + +AH+A + F++ ++ + P I T Sbjct: 119 EELQSSRPLIEVLNDFYE---FVGGGTLVAHHATHEKRFMSHMTWQLMRMPFAHRIIDTT 175 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 H + L+ C Y I I ++H AL D+ + ++++ + + + F Sbjct: 176 FLTRVVAHDENLVTLDECCIYYNIPI--TTRHHALYDAKMTAELWGQSLKLAQEKGFS 231 >gi|149372305|ref|ZP_01891493.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] gi|149354695|gb|EDM43258.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] Length = 460 Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 84/243 (34%), Gaps = 22/243 (9%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + DIETTG + I EI ++ F + P R P + L GI Sbjct: 1 MNYAILDIETTGGKYNEEGITEIAIYRFDGEKVVDQ-FCSLVNPE-RPIQPFVVNLTGIN 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + LK+ P F + + ++ +AHNA+FD + + + T Sbjct: 59 SDMLKNAPKFYEVAKRIVE--ITKDCILVAHNAQFDNRILT--TEFDRLGYDFDLETLCT 114 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + ++++ P + + I +H A D+ ++ ++ K Sbjct: 115 VELSKKLIPDMPSYSL-GKLVRSLGIPITDRHRAQGDAKATVTLFKMLL---------LK 164 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE-----ELDEHDKTIQTLGKNAIWDRYI 241 E K K P + + L + E D H + +GK+ + + Sbjct: 165 DTEKEIIKAAVKKDPKRQIDTKLLDLIKQAPSETGVYYMHDTHGNIL-YIGKSKNIKKRL 223 Query: 242 SSN 244 + + Sbjct: 224 TQH 226 >gi|149194547|ref|ZP_01871643.1| Exonuclease [Caminibacter mediatlanticus TB-2] gi|149135291|gb|EDM23771.1| Exonuclease [Caminibacter mediatlanticus TB-2] Length = 204 Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLC 49 +V D ETTGLD+K D II IGAV + + ++ F +++ Sbjct: 31 VVIDTETTGLDTKKDEIISIGAVIVKNNKILLSKKFHIYVK 71 >gi|94991249|ref|YP_599349.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10270] gi|166217452|sp|Q1JEV4|DPO3_STRPD RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|94544757|gb|ABF34805.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10270] Length = 1465 Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD+ Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D ++ F DF + + +AHNA FDVGF+NA +R + + I Sbjct: 485 HLQDAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKDARE 592 >gi|56808719|ref|ZP_00366439.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus pyogenes M49 591] gi|209560099|ref|YP_002286571.1| DNA polymerase III PolC [Streptococcus pyogenes NZ131] gi|209541300|gb|ACI61876.1| DNA polymerase III alpha subunit [Streptococcus pyogenes NZ131] Length = 1465 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD+ Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D ++ F DF + + +AHNA FDVGF+NA +R + + I Sbjct: 485 HLQDAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKDARE 592 >gi|329119491|ref|ZP_08248176.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327464424|gb|EGF10724.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 484 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 69/174 (39%), Gaps = 8/174 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTG DRI EI + + T + + P R P +L GI DE + Sbjct: 45 IVDLETTGGSFDTDRITEIAFLRFDGGTVT--PYHSLVHPE-RPIPPFIRRLTGIGDETV 101 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P FS++ E +AHN+KFD F+ R P+ LS Sbjct: 102 AGAPPFSALAHELLPLLRG--CILLAHNSKFDYTFLRRAFARCGLPFAAPTLCTVQLS-R 158 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 R ++ L S+ +R+GI S+H A D ++D + F Sbjct: 159 RLYPQFYKHSLESIIERHGIA--AASRHRATDDVLAVADYLETALREQGSETFA 210 >gi|126661959|ref|ZP_01732958.1| putative DNA polymerase III epsilon chain [Flavobacteria bacterium BAL38] gi|126625338|gb|EAZ96027.1| putative DNA polymerase III epsilon chain [Flavobacteria bacterium BAL38] Length = 256 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 81/214 (37%), Gaps = 9/214 (4%) Query: 2 IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 + R I FD+ETTG+D DRI+EI ++ + +K ++T+ + P P+ Sbjct: 1 MELKLTRPICFFDLETTGIDVARDRIVEISIFKVYPNGNKESKTW--LVNP-TIPIPPQT 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGITDE + ++P+F + ++ + + + + L+ + Sbjct: 58 TAVHGITDEKVANEPTFKELATQVHNMIKDSDLAGFNSDRFDIPLLAEELLRAEVDFDMK 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +D +I + S ++ S + H A D+ ++ + Sbjct: 118 NRVSVDVQTIFHK----MEERTLSAAYKFYCGQSLENAHSAEADTMATYEILKSQLDRYE 173 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 + K+ + +++ L ++ Sbjct: 174 NLENDMKSLSEFTTRKKSVDFAGFITLNKEGKEI 207 >gi|300173471|ref|YP_003772637.1| ATP-dependent helicase DinG [Leuconostoc gasicomitatum LMG 18811] gi|299887850|emb|CBL91818.1| ATP-dependent helicase DinG [Leuconostoc gasicomitatum LMG 18811] Length = 801 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 7/174 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTG K RII+IG + F+ F+ P G+ +L I Sbjct: 7 FVVVDLETTGQSVTKGGRIIQIGMTFIKQRQIV-DHFESFVNP-GQLIDRNIQQLTHIAQ 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +K+ P F + + N IAHN FD ++N E +R L S I Sbjct: 65 KDVKNAPYFEELAPMLQNLL--NNTIIIAHNVNFDYPYLNDEFRRTGFPELTSSAIDTVQ 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + L L I+ + H A D+H + +++K+ Q+ Sbjct: 123 LAQILLPTAPGYRLVDLTTYL--DITLNNAHRANADAHATARLFLKLWQRAEQL 174 >gi|260592337|ref|ZP_05857795.1| exonuclease [Prevotella veroralis F0319] gi|260535724|gb|EEX18341.1| exonuclease [Prevotella veroralis F0319] Length = 283 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 59/163 (36%), Gaps = 5/163 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTGLD DRII+I +++ D + F F+ P G+ +L GI+DE Sbjct: 10 IVFDLETTGLDLVADRIIQISYIKVYADGKEERENF--FINP-GKHIPTIVTELTGISDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F E D F + N FDV + E R D + Sbjct: 67 DVADAPTFKQKAKELADKFAGCDFAGFNSNR-FDVPMLAEEFLRAGIDFDFSKCRLIDAQ 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 K H A D+ V Sbjct: 126 NIYHKMERRNLAAAYKFYCGRKMEEDFVAHRADQDTEATWRVL 168 >gi|228477790|ref|ZP_04062418.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus salivarius SK126] gi|228250482|gb|EEK09696.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus salivarius SK126] Length = 1464 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 6/193 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + F F+ P G S +L GITD Sbjct: 426 YVVFDVETTGLSAVHNDLIQIAASKMHKGNII-EQFDEFIDP-GHPLSAFTTELTGITDN 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + EF +F +AHNA FDVGF+NA +R + I Sbjct: 484 HVKGAKPLVQVLQEFQEFCQG--TVLVAHNATFDVGFMNANYERHQLPTISQPVIDTLEF 541 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 R+ L L KR+G+ H + + A LL + N Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALDHHHMANYDAEATGRLLFIFIKDVFDKHGLTNLEQL 601 Query: 187 TNEDRFFKEEKKT 199 E KK+ Sbjct: 602 NTELVSEDSYKKS 614 >gi|170698522|ref|ZP_02889593.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] gi|170136606|gb|EDT04863.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] Length = 375 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 8/165 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG S RI EIG VE+ + T+ + P G+ P +L GI+DE Sbjct: 16 VFVDLETTGGSSAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQAIPPFIQQLTGISDEM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+S+ + + ++AHNA FD GF+ AE +R Sbjct: 73 VRDAPSFASLAPALVERLDG--KLFVAHNASFDRGFLRAEFERAGIAFNPDVLCT-VRLS 129 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R+ L++L +R+G+ ++H AL D+ LL + ++ Sbjct: 130 RALFPREARHGLDALIERHGLV--PAARHRALADADLLWQFWRQL 172 >gi|120436251|ref|YP_861937.1| exonuclease family protein [Gramella forsetii KT0803] gi|117578401|emb|CAL66870.1| exonuclease family protein [Gramella forsetii KT0803] Length = 223 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 6/55 (10%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFL-----CPNGRKNS 56 R IVFD ETTG + DR++ IGAV + + + + F+VFL P K Sbjct: 38 RFIVFDTETTGFNYDEDRVLSIGAVRIENNSIEISDNFEVFLEQKKFNPETVKIH 92 >gi|325066430|ref|ZP_08125103.1| DNA polymerase III subunit epsilon-like protein [Actinomyces oris K20] Length = 259 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 54/150 (36%), Gaps = 4/150 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL D I+E+ V + ++ + P G +HG+ E Sbjct: 42 YAVVDLETTGLSPTTDSILEVALVLTDAAGRVEHSWSTLIDP-GVGVDVGPTHIHGLVAE 100 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L P F + +AHNA+FDVGF+ L + T+ Sbjct: 101 ELIGAPGFDEVADLLVADLAG--RPVVAHNARFDVGFLTQALGTRGLLDRGARVPRVCTM 158 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK 157 A + L + C+ G+ I Sbjct: 159 EWAHHFMTTPSRRLTTCCEVAGVEIGRHHN 188 >gi|322411039|gb|EFY01947.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 1465 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD+ Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ ++ F DF + + +AHNA FDVGF+NA +R + + I Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKDARE 592 >gi|317489230|ref|ZP_07947747.1| exonuclease [Eggerthella sp. 1_3_56FAA] gi|325832235|ref|ZP_08165234.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1] gi|316911631|gb|EFV33223.1| exonuclease [Eggerthella sp. 1_3_56FAA] gi|325486071|gb|EGC88525.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1] Length = 998 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 9/168 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D ETTG +D + +I A + F F+ P G+ + L I D Sbjct: 41 NVVVLDTETTGFSFNHDELTQIAAARMEQGEIV-EWFITFVNP-GKPIPEDVAHLTDIHD 98 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P + ++ +F + A+ +AHNA+FD F +D Sbjct: 99 SDVADAPLPADALAKLVEFIGD--AKVVAHNAEFDRTFTTRHPSGYPLLENTWIDSLDLA 156 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IA R + L + S H A D ++ ++ Sbjct: 157 RIA-----LPRMKSHRLLDLVRAFGAPLSTHRADADVEATCAIFRILL 199 >gi|38344168|emb|CAE03499.2| OSJNBa0053K19.7 [Oryza sativa Japonica Group] gi|116309750|emb|CAH66793.1| H0215F08.4 [Oryza sativa Indica Group] gi|125591688|gb|EAZ32038.1| hypothetical protein OsJ_16216 [Oryza sativa Japonica Group] gi|215712387|dbj|BAG94514.1| unnamed protein product [Oryza sativa Japonica Group] Length = 260 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 75/201 (37%), Gaps = 16/201 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTG K+ RI+E +L N TF+ + P R L I + + Sbjct: 64 VFDLETTGYFHKDHRIVEFALCDLSGGK--NSTFETLVNPE-RTVPDYVEHLIKIGTDLV 120 Query: 71 KDK--PSFSSIFSEFWDFFNEQNAE-----WIAHN-----AKFDVGFINAELQRINKDPL 118 P FS + F + A W+AHN A+F + + D L Sbjct: 121 CRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPLPADWL 180 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++ + + + R L +L + YGI H A+ D +LS V+ KM Sbjct: 181 FFDTLLLAKKMVKAEGKKRRTSLEALREHYGIVSH-DDAHRAMRDVMILSQVFQKMTFDL 239 Query: 179 SQINFGFKTNEDRFFKEEKKT 199 N + + K + Sbjct: 240 KLTNEELINEAMKASEFSKIS 260 >gi|116618479|ref|YP_818850.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097326|gb|ABJ62477.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 797 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 3/167 (1%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTG K RII+IG + F+ F+ P G+ + +L I+ Sbjct: 7 FVVVDLETTGHSVKKGGRIIQIGMTFIKKRQIV-DHFESFVNP-GQLIDRQIQQLTHISQ 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +++ P F I + N + E + Sbjct: 65 KDVQNAPYFEEIAPLLQNLLQNTVIIAHNVNFDYPYLNDEFERTGFPLLKSAAIDTVQLA 124 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I P R + + +HR+ A + L + K+ Sbjct: 125 QILFPTAPGYRLLDLTTYLNITLKNAHRANADAHATALLFLKFWKKL 171 >gi|282859398|ref|ZP_06268505.1| exonuclease [Prevotella bivia JCVIHMP010] gi|282587832|gb|EFB93030.1| exonuclease [Prevotella bivia JCVIHMP010] Length = 287 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 74/208 (35%), Gaps = 7/208 (3%) Query: 2 IRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ N R I+FD+ETTGLD NDRII+I ++ + R +F+ P ++ E + Sbjct: 1 MKLNLTRPLIIFDLETTGLDLVNDRIIQISYIKAYPDGREERE-NIFINPE-KQIPEEVI 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GIT+ + + P+F E F + N L+ + Sbjct: 59 ALTGITNADVAEAPTFKEKGKELAQKFAGCDFAGFNSNRFDVPMLAEEFLRAGVEFDFSK 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ID +I + + + A + + Sbjct: 119 CKLIDAQNIFHK----MERRNLAAAYEFYCGRKMEDDFEAHRADQDTEATWAVLQGEIEM 174 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKR 208 + + +E+R + ++ S + Sbjct: 175 YSAERQKDEERILENNVDSLAEFSKMNN 202 >gi|21911223|ref|NP_665491.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS315] gi|28896601|ref|NP_802951.1| DNA polymerase III PolC [Streptococcus pyogenes SSI-1] gi|25452927|sp|Q8K5S8|DPO3_STRP3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|21905436|gb|AAM80294.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS315] gi|28811855|dbj|BAC64784.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes SSI-1] Length = 1465 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD+ Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ ++ F DF + + +AHNA FDVGF+NA +R + + I Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKDARE 592 >gi|300771841|ref|ZP_07081712.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium spiritivorum ATCC 33861] gi|300761227|gb|EFK58052.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 1474 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 69/230 (30%), Gaps = 19/230 (8%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 I+FD ETTGL + D R I+I D + P+G + Sbjct: 2 YIIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDDMGNMVEHADFLIAPDGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + K+HGI+ E +++ ++ + + N FD+ + E R + Sbjct: 62 SEKIHGISTELAQERGIPIQEALVRFNEALAKAKFVVGQNIGFDLNIMGCEFYRYGVESP 121 Query: 119 DPSRIIDTLSIARRKHP---------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + Y + H A D + Sbjct: 122 MAGMPVLDTCTEVTAELLKLPGGRGGRYKLPNLTELHTYLFGVPFAEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 +++++ + + F + + + I + + + E Sbjct: 182 CFLELVRLEVFTLDQLQQDTGYFVEFKTQNPGPIETVGLQHLNLKKASDE 231 >gi|94995162|ref|YP_603260.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10750] gi|123382133|sp|Q1J4M0|DPO3_STRPF RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|94548670|gb|ABF38716.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10750] Length = 1465 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD+ Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ ++ F DF + + +AHNA FDVGF+NA +R + + I Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKDARE 592 >gi|77360920|ref|YP_340495.1| hypothetical protein PSHAa1996 [Pseudoalteromonas haloplanktis TAC125] gi|76875831|emb|CAI87052.1| conserved protein of unknown function; putative enzyme [Pseudoalteromonas haloplanktis TAC125] Length = 730 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 4/114 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG ++I EIG V++ T+ + P R L GI+D + Sbjct: 569 VVDLETTGALKGGNKITEIGLVKVQHGKVI-DTWTTLVNPQ-RHIPGFITSLTGISDSMV 626 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + P F+ I + ++AHN FD GFI E + P Sbjct: 627 SNAPVFADIVKPLMAKLAG--SIFVAHNVNFDYGFIKKECEMAKVPFKMPKLCT 678 >gi|116255734|ref|YP_771567.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. viciae 3841] gi|115260382|emb|CAK03486.1| putative exonuclease/polymerase [Rhizobium leguminosarum bv. viciae 3841] Length = 326 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 79/231 (34%), Gaps = 30/231 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 ++ D ETTGL+ +ND IIEIGAV D ++ L R PE +L GI Sbjct: 75 VILDTETTGLNHRNDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIPPEITRLTGI 134 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD ++ + I + E IAHNA FD F A + Sbjct: 135 TDAMVEGQ----LIDIQSLRTLIEPADLIIAHNAGFDRPFCEAFSKIFTGKAW------- 183 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-----------YIKM 174 S++ + + L G H A+ D H L ++ + ++ Sbjct: 184 ACSVSEIDWSARGFEGTKLGYLVGQAGYFHEGHRAVDDCHALLEILDREQRDGESPFTEL 243 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEEL 221 + F +++ R K + + +E+L Sbjct: 244 YRASQRSRIRIFAEHSPFEMKDQLKARGYRWSDGSDGRLKSWWIEVGEEDL 294 >gi|71911485|ref|YP_283035.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS5005] gi|71854267|gb|AAZ52290.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS5005] Length = 1465 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD+ Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ ++ F DF + + +AHNA FDVGF+NA +R + + I Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKDARE 592 >gi|217970527|ref|YP_002355761.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|217507854|gb|ACK54865.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 203 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 6/103 (5%) Query: 7 MRKI-VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M + V D ETTGL + DR EI AV + D +R +Q + G + L G Sbjct: 1 MEAVAVIDFETTGLSPAQGDRATEIAAVIVEDGRVVDR-YQSLMN-AGVRIPAYIEALTG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 IT+ ++ P + + DF + +AHNA FD F + Sbjct: 59 ITNAMVRSAPLAGEVMRDVSDFVGD--MPIVAHNASFDAKFWD 99 >gi|81428523|ref|YP_395523.1| ATP-dependent helicase [Lactobacillus sakei subsp. sakei 23K] gi|78610165|emb|CAI55214.1| Putative ATP-dependent helicase, DinG family [Lactobacillus sakei subsp. sakei 23K] Length = 944 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 78/227 (34%), Gaps = 22/227 (9%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + K DRII+ G + + +T + P R + L IT Sbjct: 7 YAVVDLETTGTNIKDGDRIIQFGCALVQNGKII-QTISQDVNP-LRDVPTKIQHLTHITA 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L+ P F + + + N + L ++ Sbjct: 65 DQLELAPIFEDLAPTLVEILSGTVFVAHNINFDLPFLNGELTRVGLQPLDLAGIDTVELA 124 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-----------MV 176 I + PS R + + I H + H A D+ + + +++K+ + Sbjct: 125 QIILPEAPSYRLQDLTQL----LEIEHDNPHQADSDALVTAKLFLKLSARLQALPSVTLN 180 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 S++ G FF + + + S ++ L +EE+ Sbjct: 181 RLSELGEGLLRQTGDFFTDTAQQMREKSQPLPNELLI----QEEIAL 223 >gi|315641197|ref|ZP_07896274.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952] gi|315482964|gb|EFU73483.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952] Length = 1445 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 6/173 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + +F F+ P + ++ Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMHKGN-VEASFDEFIDPG---HPLSNTTINLTGIT 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S S + A +AHNA FD+GF+N ++ + I Sbjct: 481 DEMVRGSKSEEEVLRLFREFSEGAVLVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLEL 540 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGS 179 R L L K++G+ HR+ + A HL + M Sbjct: 541 ARYLYPEFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHLAWIFVKEAMEHHK 593 >gi|83643302|ref|YP_431737.1| putative exonuclease [Hahella chejuensis KCTC 2396] gi|83631345|gb|ABC27312.1| putative exonuclease [Hahella chejuensis KCTC 2396] Length = 192 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 8/125 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D ETTGLD +IEI +++ F + P PEA ++HG+T+ Sbjct: 16 RVVVLDTETTGLD-DQAEVIEISVMDMRGNVL----FDQLVRP-LNPVPPEAAEIHGVTN 69 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L +KP+F ++ W + A+NA FD + ++ + Sbjct: 70 EKLANKPNFPDVYISLWRAIGGRTVV--AYNADFDRRLLKQTCAAYRLPMIEANWQCAMN 127 Query: 128 SIARR 132 + AR Sbjct: 128 AYARY 132 >gi|15675759|ref|NP_269933.1| DNA polymerase III PolC [Streptococcus pyogenes M1 GAS] gi|81175278|sp|P0C0B8|DPO3_STRP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|13622981|gb|AAK34654.1| DNA polymerase III (alpha subunit) [Streptococcus pyogenes M1 GAS] Length = 1465 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD+ Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ ++ F DF + + +AHNA FDVGF+NA +R + + I Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKDARE 592 >gi|289423924|ref|ZP_06425717.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] gi|289155701|gb|EFD04373.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] Length = 188 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 14/171 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIET+GL+ + + I+E+GAV + D ++ + P + S EA K++G+T L Sbjct: 29 VIDIETSGLNPEKNEILELGAVRVRDNIVVAE-YEQLIRP-RKSISKEATKVNGLTKRML 86 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D+P + +F DF + + ++ D L +R + + Sbjct: 87 IDEPFVEDVIWDFKDFLGKDVLIGHNIEFDLEFIRNQLPIRNKYIDTLPLARKLLKIKRH 146 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + H ++ D + Y KM ++ Sbjct: 147 RLIDICHHYKI------------PEPNHRSISDCNATHLCYQKMKEPLKKL 185 >gi|294668271|ref|ZP_06733376.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309790|gb|EFE51033.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 493 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 9/166 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D+E TG + DRI EI + + +++ + P R L GI DE Sbjct: 22 VIIDLEATGGNPYTDRITEIAFLRFDGNGVS--SYRQLVNPQ-RNIPEFVSNLTGIDDEM 78 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P F+ + + +AHN+KFD F+ E R + + T+ + Sbjct: 79 VADAPPFADLSDDLLHRLRG--TLLLAHNSKFDYTFLRHEFSRCRLS--YAAPTLCTVQL 134 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +RR +P I+ S+H A+ D L+D Y+++ Sbjct: 135 SRRLYPQFFKHNLDSIIERH-QIAVSSRHRAMNDVLALAD-YLELT 178 >gi|228474048|ref|ZP_04058789.1| exonuclease [Capnocytophaga gingivalis ATCC 33624] gi|228274562|gb|EEK13403.1| exonuclease [Capnocytophaga gingivalis ATCC 33624] Length = 257 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 76/233 (32%), Gaps = 21/233 (9%) Query: 2 IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 + N R I FD+ETTG D DRI+EI +++ + ++ ++T+ + P P + Sbjct: 1 MELNLTRPICFFDLETTGTDVSRDRIVEISILKVWPNGNRESKTY--LVNP-TIPIPPAS 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGI+DE + P+F + + + + + L+ L Sbjct: 58 TAIHGISDERVAQAPTFKELAKQIHAMIKDSDLAGYNSDRFDIPLLAEELLRAGVDFDLK 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +D +I + S ++ + H A D+ ++ + S Sbjct: 118 NRVTVDVQTIFHK----MEQRTLSAAYKFYCKKELDNAHTAAADTEATYEILKAQLDTYS 173 Query: 180 QINFGFKTNEDRFFKE------------EKKTVPNISLLKRDKPLFTRITKEE 220 F K + K I +EE Sbjct: 174 DTLPNDIKQLSEFTTRSQIADFAGFIAYNDKGEEIFTFGKHKGRKVEEILEEE 226 >gi|148653458|ref|YP_001280551.1| ribonuclease T [Psychrobacter sp. PRwf-1] gi|148572542|gb|ABQ94601.1| RNAse T [Psychrobacter sp. PRwf-1] Length = 274 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 68/209 (32%), Gaps = 16/209 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54 +V D+ET G ++ D ++EI + ++ L P + Sbjct: 63 VVVDVETAGFNAATDALLEIACIPIVMDDEGKFVPGEPLSAHLNPFEGANLEQRALDFTG 122 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P I +E + + HNA FD+ F+NA ++R N Sbjct: 123 IDPNNPMRKAIAEEEQPALRRIFKELKAVRKDNDCLKCILVGHNAHFDLSFLNAAIERTN 182 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P L + + + C+ GI H AL D+ ++++ K Sbjct: 183 SKNHNPFHQFSVLDTVTLSALAFGQTVLARACRAAGIEFDGSEAHSALYDTQKTAELFCK 242 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPN 202 ++ S + + + + V Sbjct: 243 ILNHYSMMPISLPEDNTTDEQSGVELVNK 271 >gi|86130357|ref|ZP_01048957.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134] gi|85819032|gb|EAQ40191.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134] Length = 466 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 7/165 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTG +RI E AV L D ++ F + P + P L GI D + Sbjct: 11 IIDVETTGKGINGNRITEFCAVRLKDGEIIDK-FTSLVNPE-QYIPPFITNLTGIDDAMV 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D P F I + + A ++AHN FD I E +R+ + Sbjct: 69 EDAPLFEEIAQRVLE--ITEGAIFVAHNVNFDFNVIKGEFKRLGVSFVRKKLCT-VRLSR 125 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + L +LC GI ++H A D+ ++ +++ Sbjct: 126 KLIPNLFSYSLGNLCASIGIP--LNNRHRAEGDTDATVILFKRLL 168 >gi|261749200|ref|YP_003256885.1| DNA polymerase III epsilon chain [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497292|gb|ACX83742.1| putative DNA polymerase III epsilon chain [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 255 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 69/187 (36%), Gaps = 8/187 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FDIE TG++ DRIIEI +++ + ++ ++T+ + P P++ +HGI DE Sbjct: 11 FFDIEATGVNIGKDRIIEISILKIFPNGNQEDKTW--LIFPE-IPIPPKSTAIHGIKDED 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + F + + + N + L+ + + ID I Sbjct: 68 VAGQLPFKDVAIHIFRMIENADLAGYNSNRFDIPILVEEMLRAGISFDIKKHKTIDVQVI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + P S +Y + H + D+ ++ + + + K+ Sbjct: 128 FHKMEP----RTLSAAYKYYCKKNLIKAHSSKADTFATYEILLAQLEKYQDLKQDVKSLN 183 Query: 190 DRFFKEE 196 ++ Sbjct: 184 QFSHQKN 190 >gi|220907711|ref|YP_002483022.1| UvrD/REP helicase [Cyanothece sp. PCC 7425] gi|219864322|gb|ACL44661.1| UvrD/REP helicase [Cyanothece sp. PCC 7425] Length = 829 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 50/173 (28%), Gaps = 4/173 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFD+ETTG D +IE+ A+ L + + F ++ + Sbjct: 460 RLVVFDVETTGFSGAADEVIELAAIALE-HGQIREEFNRYIR---NTVPVGETQQVHGYS 515 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + Q A + HN FD+ + A +R+ + P Sbjct: 516 DDFLATHGQPAATVFREFCEFSQGAVLVGHNLGFDIKMVTAHARRVGIEFPSPRWEDTLN 575 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R + + L + + ++ G Sbjct: 576 LAHRFIQSENYKLATLASSLNLSATPTHRASDDTRTTVALLEAILPLLDSGRT 628 >gi|312862610|ref|ZP_07722851.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus vestibularis F0396] gi|311101870|gb|EFQ60072.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus vestibularis F0396] Length = 1464 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 6/193 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + F F+ P G S +L GITD Sbjct: 426 YVVFDVETTGLSAVHNDLIQIAASKMHKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDN 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + EF +F +AHNA FDVGF+NA +R + I Sbjct: 484 HVKGAKPLVQVLQEFQEFCQG--TVLVAHNATFDVGFMNANYERHQLPTISQPVIDTLEF 541 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 R+ L L KR+G+ H + + A LL + N Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALDHHHMANYDAEATGRLLFIFIKDVFDKHGLTNLEQL 601 Query: 187 TNEDRFFKEEKKT 199 E KK+ Sbjct: 602 NTELVSEDSYKKS 614 >gi|304406903|ref|ZP_07388557.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus curdlanolyticus YK9] gi|304343890|gb|EFM09730.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus curdlanolyticus YK9] Length = 957 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 6/177 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ V D+ETTG ++ D +I+IG V L + TF F+ P P +L GIT Sbjct: 1 MKFAVLDLETTGHQAE-DEMIQIGIVMLDEELNVTDTFSSFVRPAT-DIPPFITQLTGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + D PS + ++ + A +AHN FD F+N L R P R+ Sbjct: 59 NEMVADAPSVEDVLTDVVKLLGD--AVLVAHNVGFDAHFMNRALDRCGYSPFTGRRLDTI 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L ++ + +GIT KH A D+ + ++ + + Sbjct: 117 DLLRMLYPTLPSYQLGAVSEAFGITH--ERKHQADSDAEATAMLFAHCVHKLRDLPL 171 >gi|89890044|ref|ZP_01201555.1| DNA polymerase III [Flavobacteria bacterium BBFL7] gi|89518317|gb|EAS20973.1| DNA polymerase III [Flavobacteria bacterium BBFL7] Length = 1450 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 68/230 (29%), Gaps = 19/230 (8%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + D R+I+I + + P+G + Sbjct: 2 YLIFDTETTGLPKRWDAPYTDVDNWPRVIQIAWQLHDEMGNLIEHKDYLVKPDGFDIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A ++HGI+ + ++ + + N KFD+ AE +R Sbjct: 62 AERIHGISTALADQQGVPLEEMLSEFNIALSKAKFVVGQNLKFDLNVTGAEFERTQIAND 121 Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + ++ H A D + Sbjct: 122 LQEIPVLDTCTEHTAQLCQIPGGRGGKFKLPTLTELHQFLFNQPFGEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 +++++ +D F + +++ I + + + + Sbjct: 182 CFLELIRKQQYSKQQLDVADDYFVRFQQQNPAPIRPVGITHINLKKASDQ 231 >gi|227496849|ref|ZP_03927115.1| possible DNA polymerase III subunit epsilon [Actinomyces urogenitalis DSM 15434] gi|226833644|gb|EEH66027.1| possible DNA polymerase III subunit epsilon [Actinomyces urogenitalis DSM 15434] Length = 174 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 20/43 (46%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 V D+ETTGL D I+EIG V RT+ + P Sbjct: 49 YAVVDLETTGLSPATDAILEIGLVLTAPDGTPQRTWSTLINPG 91 >gi|50915026|ref|YP_060998.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10394] gi|73919253|sp|Q5X9U8|DPO3_STRP6 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|50904100|gb|AAT87815.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10394] Length = 1465 Score = 62.3 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD+ Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDK 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ ++ F DF + + +AHNA FDVGF+NA +R + + I Sbjct: 485 HLQGAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEF 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKDARE 592 >gi|227540116|ref|ZP_03970165.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] gi|227239977|gb|EEI89992.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] Length = 1474 Score = 62.3 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 69/230 (30%), Gaps = 19/230 (8%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 I+FD ETTGL + D R I+I D + P+G + Sbjct: 2 YIIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDDMGNMVEHADFLIAPDGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + K+HGI+ E +++ ++ + + N FD+ + E R + Sbjct: 62 SEKIHGISTELAQERGIPIQEALVRFNEALAKAKFVVGQNIGFDLNIMGCEFYRYGVESP 121 Query: 119 DPSRIIDTLSIARRKHP---------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + Y + H A D + Sbjct: 122 MAEMPVLDTCTEVTAELLKLPGGRGGRFKLPNLTELHTYLFGVPFAEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 +++++ + + F + + + I + + + E Sbjct: 182 CFLELVRLEVFTLDQLQQDTGYFVEFKTQNPGPIETVGLQHLNLKKASDE 231 >gi|217076887|ref|YP_002334603.1| DNA polymerase III PolC-type [Thermosipho africanus TCF52B] gi|217036740|gb|ACJ75262.1| DNA polymerase III PolC-type [Thermosipho africanus TCF52B] Length = 186 Score = 62.3 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 11/176 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPE 58 M+ +N V D ETTGL+ DRIIEI V + + + + PN R Sbjct: 1 MLDENV--YCVMDTETTGLNPYFGDRIIEIAIVPVYKNKIVKKWIYHSLVNPNIR-IPAL 57 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 K+HGI+++ + D PS +I S + ++ HNA D+ FI+ + I + P+ Sbjct: 58 TEKIHGISNDAITDAPSLENIISNVRA--YAKGTIFVMHNAYVDLSFIDIATKEIGEFPI 115 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + I + + I+ + H AL D+ L + V++K+ Sbjct: 116 NFRYIDTLEISQVLYNKKRSLESL----VKEFKIADKVPHRALEDAILTAKVFLKL 167 >gi|21929661|gb|AAM81963.1|AF445377_1 DNA polymerase I-like protein B [Trypanosoma brucei] Length = 1404 Score = 62.3 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 5/87 (5%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+ K R +VFDIE+TGL++ D IIE+ A +F + P R P++ + Sbjct: 757 RRRKYRLVVFDIESTGLNTATDAIIEVAAF----DPVEGTSFSSLVNPQ-RPIPPQSTAI 811 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNE 89 H ITD ++ P S + F + Sbjct: 812 HHITDSMVQGAPRLSEVTQAFARYLRL 838 >gi|71755261|ref|XP_828545.1| mitochondrial DNA polymerase I protein B [Trypanosoma brucei TREU927] gi|70833931|gb|EAN79433.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma brucei] gi|261334421|emb|CBH17415.1| conserved hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 1404 Score = 62.3 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 5/87 (5%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+ K R +VFDIE+TGL++ D IIE+ A +F + P R P++ + Sbjct: 757 RRRKYRLVVFDIESTGLNTATDAIIEVAAF----DPVEGTSFSSLVNPQ-RPIPPQSTAI 811 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNE 89 H ITD ++ P S + F + Sbjct: 812 HHITDSMVQGAPRLSEVTQAFARYLRL 838 >gi|332638894|ref|ZP_08417757.1| helicase [Weissella cibaria KACC 11862] Length = 940 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 67/226 (29%), Gaps = 15/226 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETT S+ RII+I AV + K F + P G + ++L GIT Sbjct: 7 YAVVDLETTRTTSETGRIIQI-AVAFVQNKKIINQFSTLVNP-GEQIPRNIIQLTGITQN 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K P F + N E + + Sbjct: 65 MVKGAPFFEDVAMTLHAMLQGTIFVAHNVNFDLPFLNAEFERVGLTALKSTALDTVPLSQ 124 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI---NFGF 185 I P R + C H H A D+ ++ I ++ + Sbjct: 125 ILWPTAPGYRLVDMTNCLSL----EHNHPHQADSDALATGELLIAILKRAEGLPMITLQA 180 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 + + KTV +L K + H + I +L Sbjct: 181 LADLPLVLPRDTKTVFEKALAKNQAEPQPLPS------HLQVIDSL 220 >gi|327332247|gb|EGE73984.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL096PA3] Length = 584 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GIT + Sbjct: 21 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 77 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS S++ + + ++ +AHNA+FD+GF+ + + Sbjct: 78 RSAPSLSTVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 122 >gi|322517665|ref|ZP_08070529.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124] gi|322123697|gb|EFX95287.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124] Length = 1424 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 6/193 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + F F+ P G S +L GITD Sbjct: 386 YVVFDVETTGLSAVHNDLIQIAASKMHKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDN 443 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + EF +F +AHNA FDVGF+NA +R + I Sbjct: 444 HVKGAKPLVQVLQEFQEFCQG--TVLVAHNATFDVGFMNANYERHQLPTILQPVIDTLEF 501 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 R+ L L KR+G+ H + + A LL + N Sbjct: 502 ARNLYPEYKRHGLGPLTKRFGVALDHHHMANYDAEATGRLLFIFIKDVFDKHGLTNLEQL 561 Query: 187 TNEDRFFKEEKKT 199 E KK+ Sbjct: 562 NTELVSEDSYKKS 574 >gi|206561350|ref|YP_002232115.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315] gi|198037392|emb|CAR53327.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315] Length = 375 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 8/165 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG S + RI EIG VE+ + T+ + P G+ P +L GI+D Sbjct: 16 VFVDLETTGGSSADHRITEIGVVEIGPLGVS--TWTSLVNP-GQAIPPFIQQLTGISDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D P+F+S+ ++ + ++AHNA FD GF+ AE +R Sbjct: 73 VRDAPTFASLAPALFERLDG--KLFVAHNASFDRGFLRAEFERAGLTFNPDVLCT-VRLS 129 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 SR+ L++L +R+G+ ++H AL D+ LL + ++ Sbjct: 130 RALFPRESRHGLDALIERHGLV--PAARHRALADADLLWQFWRQL 172 >gi|297205524|ref|ZP_06922920.1| DNA polymerase III [Lactobacillus jensenii JV-V16] gi|297150102|gb|EFH30399.1| DNA polymerase III [Lactobacillus jensenii JV-V16] Length = 317 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 72/219 (32%), Gaps = 12/219 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70 DIETTGL DRI E+ +++ + + + P K KL+GI + + Sbjct: 38 LDIETTGLSLYRDRITELAGIKVRNGKVVAE-YSQLVKYPKDNKVPRFITKLNGIDEALI 96 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + F + +N FD+ FI ++ L + I Sbjct: 97 LANGMPVKEAITEFRNFIG-GDVIVGYNVNFDLNFIYDLWEKFQLKKLSNNYIDVLHFSR 155 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 S N L +R GI+ H L DS V+ + + Sbjct: 156 VFFKKESHNRLLDCIRRLGIS--ESEAHRGLKDSLDTKAVFDIY-RKQFTPEMLNEVKDS 212 Query: 191 RFFKEEKKTVPNISLLKRDKPLFT------RITKEELDE 223 + +P L+KR+ + KEEL+ Sbjct: 213 LKSCVLTEEIPFEYLIKRNPLKNKTVVFAGTVNKEELEL 251 >gi|11498577|ref|NP_069805.1| DNA polymerase III, subunit epsilon (dnaQ) [Archaeoglobus fulgidus DSM 4304] gi|2649627|gb|AAB90271.1| DNA polymerase III, subunit epsilon (dnaQ) [Archaeoglobus fulgidus DSM 4304] Length = 205 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61 D+ETTGL+ K D II IGAV ++ ++ L P K+ Sbjct: 13 IDLETTGLNQKKDEIIAIGAVPIIGTRILAGESYYRLLRPEKFKHESMKFH 63 >gi|332161660|ref|YP_004298237.1| ribonuclease T [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665890|gb|ADZ42534.1| ribonuclease T [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330864087|emb|CBX74161.1| ribonuclease T [Yersinia enterocolitica W22703] Length = 232 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L + + T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFNG 90 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASLK 150 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D+ + ++ +++ Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCELVN 210 Query: 177 GGSQIN 182 ++ Sbjct: 211 RWKKLG 216 >gi|312195665|ref|YP_004015726.1| DNA polymerase III epsilon subunit [Frankia sp. EuI1c] gi|311227001|gb|ADP79856.1| DNA polymerase III, epsilon subunit [Frankia sp. EuI1c] Length = 615 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 57/174 (32%), Gaps = 4/174 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG I E GAV++ F + P L GITD Sbjct: 52 FVVFDLETTGTGPTTAEITEFGAVKVRGGEVVAE-FATLVR-ASTGIPPLITVLTGITDA 109 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + + F +F +AHNA FD+ F+ A +R+ + Sbjct: 110 MLATAPPLAEVLPAFLEFIQG--TVLVAHNAGFDLSFLKAACERVGYPVPTWEHLDTARL 167 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R + H AL D+ DV + + Sbjct: 168 ARRIVTRDESPNNKLSSLARLFRARTEPCHRALADARATVDVLHGLFERLGNLG 221 >gi|255532547|ref|YP_003092919.1| DNA polymerase III subunit epsilon [Pedobacter heparinus DSM 2366] gi|255345531|gb|ACU04857.1| DNA polymerase III, epsilon subunit [Pedobacter heparinus DSM 2366] Length = 456 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 4/103 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V DIETTG + + I EI + + D + ++ + P G++ L GI+ Sbjct: 1 MLYAVVDIETTGGFASGNGITEIS-ILVHDGREVVEAYETLINP-GQEIPAYIETLTGIS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 +E + P F + +E + ++ ++AHN FD FI Sbjct: 59 NEMVVTAPLFGGVAAEIYAMLHD--KIFVAHNVNFDFSFIKHH 99 >gi|123442415|ref|YP_001006394.1| ribonuclease T [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166200024|sp|A1JP36|RNT_YERE8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|122089376|emb|CAL12224.1| ribonuclease T [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 215 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFNG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 80 IDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKKLG 205 >gi|238787143|ref|ZP_04630943.1| Ribonuclease T [Yersinia frederiksenii ATCC 33641] gi|238724931|gb|EEQ16571.1| Ribonuclease T [Yersinia frederiksenii ATCC 33641] Length = 228 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L + + T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAQTDALLEIAAVTLQMNKEGWLLPDETLHFHVDPFEGANLQPEALAFNG 90 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 91 IDPTNPLRGAVSEYDALHAIFKAVRKGLKDQGCNRAIIVAHNAHFDHSFVMAAAERASLK 150 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D+ + ++ +++ Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCELVN 210 Query: 177 GGSQIN 182 ++ Sbjct: 211 RWKKLG 216 >gi|149196822|ref|ZP_01873875.1| exonuclease [Lentisphaera araneosa HTCC2155] gi|149139932|gb|EDM28332.1| exonuclease [Lentisphaera araneosa HTCC2155] Length = 261 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 72/196 (36%), Gaps = 9/196 (4%) Query: 2 IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 ++ N R IVF D+ETTGL+ DRIIEI +++ D + +T + P + S EA Sbjct: 1 MKLNLQRPIVFFDLETTGLNPTEDRIIEICCIKVHPDGKRDIKT--RRVNPE-KPISSEA 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 ++ GITDE +KD+P+F + + FF + + Sbjct: 58 SEITGITDEDVKDEPTFKQMAKGIYKFFEGCDISGYNIMRFDLRVLTEEFKRAGISFDAS 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++D I +K P R+ H A D DV + Sbjct: 118 AHDLVDVQRIFHKKEP----RTLEAALRFYCKKDLEGAHAAENDVIATIDVLEGQLDMYD 173 Query: 180 QINFGFKTNEDRFFKE 195 + + E Sbjct: 174 DLENDMAKLAEYCKDE 189 >gi|289426266|ref|ZP_06428012.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187] gi|289153431|gb|EFD02146.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187] Length = 584 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GIT + Sbjct: 21 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 77 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS S+I + + ++ +AHNA+FD+GF+ + + Sbjct: 78 RSAPSLSAILPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 122 >gi|332306913|ref|YP_004434764.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174242|gb|AEE23496.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica 4H-3-7+YE-5] Length = 251 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 4/114 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+ K D I+ IG V + + + + P+ S +++ +HGIT Sbjct: 61 VALDFETTGLNPKTDSIVSIGLVAMTTQRIRCAQAQHWIIKPDTELKS-KSVVIHGITHS 119 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + D P+F+ + E + +AH+ + F+N+ +++ + + Sbjct: 120 DVADAPTFNRVLDELLEHLQG--KVVVAHHKDIESRFLNSAMKQYIGEEIVFPC 171 >gi|327452827|gb|EGE99481.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL092PA1] Length = 587 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GIT + Sbjct: 24 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 80 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS S++ + + ++ +AHNA+FD+GF+ + + Sbjct: 81 RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 125 >gi|315108203|gb|EFT80179.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA2] Length = 584 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GIT + Sbjct: 21 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 77 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS S++ + + ++ +AHNA+FD+GF+ + + Sbjct: 78 RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 122 >gi|315085964|gb|EFT57940.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA3] Length = 584 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GIT + Sbjct: 21 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 77 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS S++ + + ++ +AHNA+FD+GF+ + + Sbjct: 78 RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 122 >gi|315080369|gb|EFT52345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL078PA1] Length = 597 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GIT + Sbjct: 34 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 90 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS S++ + + ++ +AHNA+FD+GF+ + + Sbjct: 91 RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 135 >gi|314990240|gb|EFT34331.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA3] Length = 604 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GIT + Sbjct: 41 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 97 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS S++ + + ++ +AHNA+FD+GF+ + + Sbjct: 98 RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 142 >gi|314987763|gb|EFT31854.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA2] Length = 587 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GIT + Sbjct: 24 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 80 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS S++ + + ++ +AHNA+FD+GF+ + + Sbjct: 81 RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 125 >gi|314968043|gb|EFT12142.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA1] Length = 584 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GIT + Sbjct: 21 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 77 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS S++ + + ++ +AHNA+FD+GF+ + + Sbjct: 78 RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 122 >gi|314960311|gb|EFT04413.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA2] Length = 604 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GIT + Sbjct: 41 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 97 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS S++ + + ++ +AHNA+FD+GF+ + + Sbjct: 98 RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 142 >gi|313827785|gb|EFS65499.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA2] Length = 590 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GIT + Sbjct: 27 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 83 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS S++ + + ++ +AHNA+FD+GF+ + + Sbjct: 84 RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 128 >gi|313823175|gb|EFS60889.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA2] gi|313833843|gb|EFS71557.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL056PA1] gi|314919771|gb|EFS83602.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA3] Length = 604 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GIT + Sbjct: 41 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 97 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS S++ + + ++ +AHNA+FD+GF+ + + Sbjct: 98 RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 142 >gi|313818253|gb|EFS55967.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA2] Length = 597 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GIT + Sbjct: 34 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 90 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS S++ + + ++ +AHNA+FD+GF+ + + Sbjct: 91 RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 135 >gi|313815838|gb|EFS53552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA1] gi|314931784|gb|EFS95615.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL067PA1] gi|314956043|gb|EFT00441.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA1] gi|314958449|gb|EFT02552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA1] gi|314976217|gb|EFT20312.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL045PA1] gi|315088618|gb|EFT60594.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA1] gi|327451091|gb|EGE97745.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA3] gi|328753779|gb|EGF67395.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL020PA1] gi|328760388|gb|EGF73957.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL099PA1] Length = 590 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GIT + Sbjct: 27 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 83 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS S++ + + ++ +AHNA+FD+GF+ + + Sbjct: 84 RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 128 >gi|313809712|gb|EFS47433.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA1] gi|314915265|gb|EFS79096.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA4] gi|314978176|gb|EFT22270.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA2] gi|314983574|gb|EFT27666.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA1] gi|315098227|gb|EFT70203.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA2] gi|327330574|gb|EGE72320.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL097PA1] gi|327442625|gb|EGE89279.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA2] gi|327445348|gb|EGE92002.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA2] Length = 597 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GIT + Sbjct: 34 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 90 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS S++ + + ++ +AHNA+FD+GF+ + + Sbjct: 91 RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 135 >gi|313791823|gb|EFS39934.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA1] Length = 597 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GIT + Sbjct: 34 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 90 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS S++ + + ++ +AHNA+FD+GF+ + + Sbjct: 91 RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 135 >gi|313764773|gb|EFS36137.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA1] gi|313807207|gb|EFS45694.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA2] gi|313813245|gb|EFS50959.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA1] gi|313820015|gb|EFS57729.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA1] gi|313825546|gb|EFS63260.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA1] gi|313830622|gb|EFS68336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL007PA1] gi|315096369|gb|EFT68345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL038PA1] gi|315101083|gb|EFT73059.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA1] gi|327325880|gb|EGE67670.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL096PA2] gi|328753125|gb|EGF66741.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA1] gi|328759130|gb|EGF72746.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA2] gi|332675138|gb|AEE71954.1| hypothetical protein PAZ_c07700 [Propionibacterium acnes 266] Length = 587 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GIT + Sbjct: 24 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 80 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS S++ + + ++ +AHNA+FD+GF+ + + Sbjct: 81 RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 125 >gi|289426896|ref|ZP_06428622.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165] gi|295130296|ref|YP_003580959.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Propionibacterium acnes SK137] gi|289159985|gb|EFD08163.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165] gi|291376452|gb|ADE00307.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Propionibacterium acnes SK137] gi|313772552|gb|EFS38518.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL074PA1] gi|313802090|gb|EFS43322.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA2] gi|313838422|gb|EFS76136.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL086PA1] gi|314918505|gb|EFS82336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA1] gi|314925502|gb|EFS89333.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA3] gi|314963121|gb|EFT07221.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA1] gi|314973624|gb|EFT17720.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA1] gi|315077585|gb|EFT49643.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA2] gi|315084628|gb|EFT56604.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA2] gi|327447777|gb|EGE94431.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA1] gi|327453554|gb|EGF00209.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA2] Length = 584 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GIT + Sbjct: 21 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-PIPASVQVLTGITHAMV 77 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS S++ + + ++ +AHNA+FD+GF+ + + Sbjct: 78 RSAPSLSAVLPSWLE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 122 >gi|289640817|ref|ZP_06472988.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca glomerata] gi|289509393|gb|EFD30321.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca glomerata] Length = 629 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 56/166 (33%), Gaps = 4/166 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + + I EIGAV++ + P+ P L GITD Sbjct: 93 FVVVDLETTGSRAADSEITEIGAVKIRGGEVLAE-LATLVRPD-APIPPFISVLTGITDA 150 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + F + + +AHNA FD+GF+ R D + Sbjct: 151 MVATAPRIDAALPTFLE--FAHGSVLVAHNAPFDLGFLREACVRCGHPVPDWEHLDTLRI 208 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + D H AL D+ V + Sbjct: 209 ARQVLGRDETPDHKLASLARLFPADAGPCHRALADARATVAVLHGL 254 >gi|296272299|ref|YP_003654930.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM 7299] gi|296098846|gb|ADG94796.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM 7299] Length = 209 Score = 61.9 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP 50 + D ETTGL+ K D I+ IGAV + + ++TF +++ P Sbjct: 31 YVCLDCETTGLNPKKDEILSIGAVIIKENKVLMSKTFNIYVKP 73 >gi|126665661|ref|ZP_01736642.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17] gi|126629595|gb|EBA00212.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17] Length = 483 Score = 61.9 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 7/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D+ETTG DRI EIG + +Q + P R SP +L GI++ Sbjct: 13 FAFLDLETTGGSVATDRITEIGIQFWRAGECVGQ-WQTLVNPKTR-ISPFIEQLTGISNA 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P F I E + ++AHNA+FD GF+ E +R+ + + LS Sbjct: 71 MVADAPLFEDIADELEQRLDG--VVFVAHNARFDYGFVKGEFRRLGRMFVAKVLCTVKLS 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 R R+++++L +R+G+ +H A+ D + + ++ + Sbjct: 129 -RRLYPEFRRHNMDALIERHGLQ--QVQRHRAMGDVAAMLGFFEHVLAQQGEDTLE 181 >gi|282890058|ref|ZP_06298591.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500064|gb|EFB42350.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 231 Score = 61.9 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 14/216 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + +D ETTG+ + D +IE+ + + RTF+ + P G PEA +H IT Sbjct: 1 MKALYYDTETTGIKADRDYVIELAVYDPVGN----RTFERLINP-GVPIPPEATAIHHIT 55 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE + + PSF I EF +F + +N +FD+ F+ E +R N++ + Sbjct: 56 DEMVANAPSFGEIIEEFKEFCSGDVVLIAHNNDQFDIHFLRNEFKRSNQELPPWKFLDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 R ++ R+ L L YGI + H AL D +L V+ M+ Sbjct: 116 KWARRYRNDLPRHTLQFLRGIYGIA--ENNAHRALDDVIVLHQVFSAMLD-------DLS 166 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222 E + K + ++ K ++ + Sbjct: 167 IAEAYALMNQPKDIQHMPFGKHQGMPLKQVPASYIQ 202 >gi|294660232|ref|NP_852876.2| DNA polymerase III subunit alpha polC/Gram positive-type [Mycoplasma gallisepticum str. R(low)] gi|284811887|gb|AAP56444.2| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma gallisepticum str. R(low)] gi|284930337|gb|ADC30276.1| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma gallisepticum str. R(high)] Length = 1494 Score = 61.9 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 90/221 (40%), Gaps = 15/221 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT---------FQVFLCPNGRKNSPEA 59 ++FDIETTGL++ ++IIEI AV + F+ + N + S Sbjct: 410 FVIFDIETTGLNAYYEQIIEIAAVRVKAELNVTNHQLEFVQIGKFEKLIK-NKKPLSKFT 468 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L G+ D LKD ++ EF +F + + +AHN K Sbjct: 469 TQLTGLKDSDLKDAQDEKTVLEEFVNFIQK-DDVLVAHNGIDFDFIWINTKLDKYKLKPL 527 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++D+L +A + + R L +L + G H A D+ LL+ + M+ Sbjct: 528 DNPMLDSLRLAYQLYQFKRYTLENLSLKLGYEYDKTLAHRANYDTELLAKCLMIMLSQVY 587 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 N+ + +++K + ++S K RI E+ Sbjct: 588 AKNWRSLLD----LNDQEKLLNDLSEKSLKKAANLRINDED 624 >gi|226952584|ref|ZP_03823048.1| ribonuclease T (degrades tRNA, with exonuclease and ssDNAse activity) [Acinetobacter sp. ATCC 27244] gi|294649880|ref|ZP_06727280.1| ribonuclease T [Acinetobacter haemolyticus ATCC 19194] gi|226836664|gb|EEH69047.1| ribonuclease T (degrades tRNA, with exonuclease and ssDNAse activity) [Acinetobacter sp. ATCC 27244] gi|292824254|gb|EFF83057.1| ribonuclease T [Acinetobacter haemolyticus ATCC 19194] Length = 220 Score = 61.9 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 16/196 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54 +V D+ET G + + D ++EI + ++ +FQ + P + Sbjct: 24 VVVDVETAGFNCQTDALLEIACIPIVYDEHGQFVPGPSFQAHINPFEGANLDRRSLDFIG 83 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P + ++ +E + +A + HNA FD+GF+ A + R Sbjct: 84 IDPFNPMRVAMAEDERSALRRIFKSLNEIRKAQHCTHAVLVGHNAHFDLGFLQAAIARSG 143 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P + + C + GI + H AL D+ ++++ Sbjct: 144 TKNQNPFHSFSVFDTVTLSAVMFGQTVLARACIQAGIEFDGKEAHSALYDTQKTAELFCY 203 Query: 174 MMVGGSQINFGFKTNE 189 ++ S E Sbjct: 204 ILNKLSPHLLDSLVTE 219 >gi|218130099|ref|ZP_03458903.1| hypothetical protein BACEGG_01686 [Bacteroides eggerthii DSM 20697] gi|317476592|ref|ZP_07935837.1| exonuclease [Bacteroides eggerthii 1_2_48FAA] gi|217987603|gb|EEC53931.1| hypothetical protein BACEGG_01686 [Bacteroides eggerthii DSM 20697] gi|316907188|gb|EFV28897.1| exonuclease [Bacteroides eggerthii 1_2_48FAA] Length = 256 Score = 61.9 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 69/191 (36%), Gaps = 8/191 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + +DRI+EI +++ + ++ ++T + + P EA +HGI DE Sbjct: 10 VFFDLETTGTNINSDRIVEICYLKVYPNGNEESKTMR--INPEMH-IPAEASAVHGIYDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + + + N L+ + + +D Sbjct: 67 DVADCPTFKEVARSIANDIEGCDLAGFNSNRFDIPVLAEEFLRADVDIDMSRRKFVDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + S ++ + H A D+ +V + + ++ Sbjct: 127 IFHK----MEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLMSQLDRYPELQNDVAFL 182 Query: 189 EDRFFKEEKKT 199 D + Sbjct: 183 SDYSSFNKNVD 193 >gi|157736758|ref|YP_001489441.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018] gi|315635934|ref|ZP_07891196.1| exonuclease [Arcobacter butzleri JV22] gi|157698612|gb|ABV66772.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018] gi|315479913|gb|EFU70584.1| exonuclease [Arcobacter butzleri JV22] Length = 202 Score = 61.9 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 3/168 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + FD ETTGL+ K D II IGAV + D +++ F F+ P + EA+K+H I + Sbjct: 32 YVCFDCETTGLNPKKDDIISIGAVIIKDNTIISSKKFVKFIKPKTKLQ-AEAIKVHHIRE 90 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID-T 126 L + + EF +F + + + + P + + Sbjct: 91 CDLNNANDIDLVIEEFLEFIGNRTLVGYFLEFDISMINKYLKPKLGITLPNKTLEVSEIY 150 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P DL + I KH A D+ + + ++IK+ Sbjct: 151 HDYKIEIIPQGHIDLRFNSIMEELEIPSLGKHDAFNDALMTAMIFIKL 198 >gi|260909505|ref|ZP_05916208.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260636353|gb|EEX54340.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 900 Score = 61.9 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 2/107 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL+ D I++I AV++ F VF+ R + Sbjct: 518 VVFDTETTGLNVFEDDIVQIAAVKMRASCVVEGSAFNVFIKTE-RPIPAMLGDIPNPIVA 576 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 L+ + + ++ +AHNA FD + LQR Sbjct: 577 ELQRNTCLPAAQALQDFMQYVGDSVLLAHNADFDYNILRFNLQRYCP 623 >gi|163848275|ref|YP_001636319.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus J-10-fl] gi|222526189|ref|YP_002570660.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl] gi|163669564|gb|ABY35930.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus J-10-fl] gi|222450068|gb|ACM54334.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl] Length = 232 Score = 61.9 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Query: 8 RKI---VFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLH 63 R++ V D+ETTGLD+++D +I +GAV + + +T+ + P + Sbjct: 33 REVPYTVIDVETTGLDTRHDALIAVGAVNIENGRVLLKQTWYSLIKPPPDREPSVESIRV 92 Query: 64 GI 65 Sbjct: 93 HH 94 >gi|327440746|dbj|BAK17111.1| Rad3-related DNA helicase [Solibacillus silvestris StLB046] Length = 926 Score = 61.9 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 8/177 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 +++++ + + DIETTG DR+I+I V ++ + + + F+ P G+ Sbjct: 1 MKESQ-KYAIVDIETTGHSPASGDRMIQIAIV-IMQGWEIVKKYSTFINP-GKPIPLFIQ 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L ITDE +KD F + ++ A ++AHN FD+ F+ AE R Sbjct: 58 DLTNITDEDVKDALPFEAYADYIYELLEG--AVFVAHNTDFDLNFLQAEFNRAGLSKWHG 115 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMM 175 +I S L+ L + I +HR+ AL ++LL + +++ Sbjct: 116 KKIDTVELTKILFPMSLSYKLSDLANDFNILLQSAHRADDDALATAYLLKHCWEELL 172 >gi|217973787|ref|YP_002358538.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223] gi|217498922|gb|ACK47115.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223] Length = 300 Score = 61.9 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 3/166 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D ETTGL + D+IIEI A++ S + F+ + PN + S + + GIT+ Sbjct: 19 FIALDAETTGLSADVDKIIEIAAIKFDLLSNDHPVFEALINPNVK-VSRKITSITGITNA 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D+ +F+ I + F + +A+NAKFD GF++ E + + L+ Sbjct: 78 MLADQETFTDIAQDLKQFIGD--LPIVAYNAKFDKGFLDTEFANVGIILNNHYHCALNLA 135 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 A P+ + + + +HR+K A+ + + + Sbjct: 136 KAAFNLPNYKLATVAEHCSIPLNEAHRAKADAVAAGRVFMCAAVTL 181 >gi|297808725|ref|XP_002872246.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp. lyrata] gi|297318083|gb|EFH48505.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp. lyrata] Length = 316 Score = 61.9 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 62/181 (34%), Gaps = 13/181 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D+ETTGL+ K +RIIEI A +L + TFQ + P + + Sbjct: 112 IVSDLETTGLNRKRERIIEIAAQDLAGGGYS--TFQTLVNPGDVPVTNTDIHGIRTDMVC 169 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + P + F + + +AHN K + + ++ Sbjct: 170 RPEVPRMEELIPIFLQYVESRQKPGGYVMLVAHNGKSFDFRFLINEFNRCSYEIPHNWLL 229 Query: 125 DTLSIARRKHPSSRNDLNSL------CKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 R+H S + + + H AL D LLS V+ K+ + Sbjct: 230 LDSLPLGREHMKSLDPTGKPKASLKVLQEHYSLTREGDAHRALSDVLLLSKVFQKLTIDL 289 Query: 179 S 179 Sbjct: 290 K 290 >gi|238757732|ref|ZP_04618915.1| Ribonuclease T [Yersinia aldovae ATCC 35236] gi|238703975|gb|EEP96509.1| Ribonuclease T [Yersinia aldovae ATCC 35236] Length = 226 Score = 61.9 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L + + T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAKTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFNG 90 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNANFDHSFVMAAAERASLK 150 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D+ + ++ +++ Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCELVN 210 Query: 177 GGSQIN 182 ++ Sbjct: 211 RWKKLG 216 >gi|325571082|ref|ZP_08146654.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755] gi|325156167|gb|EGC68353.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755] Length = 1449 Score = 61.9 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52 IVFD+ETTGL + D IIE+ AV + + +F F+ P Sbjct: 423 YIVFDVETTGLSAVYDTIIELAAVRMHKGNVEG-SFDEFIDPGH 465 >gi|237718360|ref|ZP_04548841.1| DNA Pol III Epsilon Chain [Bacteroides sp. 2_2_4] gi|229452293|gb|EEO58084.1| DNA Pol III Epsilon Chain [Bacteroides sp. 2_2_4] Length = 243 Score = 61.9 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 8/191 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + DRI+EI +++ + ++ +T + + P + +HGI D Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTLR--INPEMH-IPEASSAIHGIYDA 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + + N L+ + + +D Sbjct: 67 DVVDCPTFKEVAKNIARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMTKRKFVDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + S ++ + H A D+ +V + S + Sbjct: 127 IFHK----MEQRTLSAAYKFYCDKNLEDAHTAEADTRATYEVLKAQLDRYSDLQNDIAFL 182 Query: 189 EDRFFKEEKKT 199 D + Sbjct: 183 ADYSSFSKNVD 193 >gi|291561902|emb|CBL40706.1| exonuclease, DNA polymerase III, epsilon subunit family [butyrate-producing bacterium SS3/4] Length = 247 Score = 61.9 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 83/199 (41%), Gaps = 7/199 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG+ +++++I EIG V+++D +T T+ + P+ R+ ++L GITD+ Sbjct: 9 YVALDLETTGIGARHEKITEIGMVKVIDG-ETTDTYHTMVNPH-REIPKRIVELTGITDD 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P I E ++ + H FD GF+ + L Sbjct: 67 MVKDAPGIEEILDEVLA--FTEDLPLLGHQIIFDYGFLVQAAVNQKRKFEKYGVDTLKLC 124 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +N + ++ + H AL D++ ++Y ++ + T Sbjct: 125 RYLMPGEEKKNLSAACAYF---EVTQDTAHRALSDAYAAHNLYQELKKRFGKERPELFTA 181 Query: 189 EDRFFKEEKKTVPNISLLK 207 + +K +K+ + + Sbjct: 182 KMLQYKAKKERTASKRQKE 200 >gi|160891921|ref|ZP_02072924.1| hypothetical protein BACUNI_04379 [Bacteroides uniformis ATCC 8492] gi|270296413|ref|ZP_06202613.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317480391|ref|ZP_07939491.1| exonuclease [Bacteroides sp. 4_1_36] gi|156858399|gb|EDO51830.1| hypothetical protein BACUNI_04379 [Bacteroides uniformis ATCC 8492] gi|270273817|gb|EFA19679.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316903469|gb|EFV25323.1| exonuclease [Bacteroides sp. 4_1_36] Length = 256 Score = 61.9 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 66/173 (38%), Gaps = 8/173 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + +DRI+EI +++ + ++ ++T + + P EA +HGI D Sbjct: 10 VFFDLETTGTNINSDRIVEICYLKVYPNGNEESKT--MRINPE-MPIPAEASAVHGIYDA 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + + + N L+ + + +D Sbjct: 67 DIADCPTFKEVARNIANDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMSRRKFVDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 I + S ++ + H A D+ +V + + ++ Sbjct: 127 IFHK----MEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLMSQLDRYPEL 175 >gi|313673170|ref|YP_004051281.1| DNA polymerase iii, epsilon subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312939926|gb|ADR19118.1| DNA polymerase III, epsilon subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 226 Score = 61.9 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 5/164 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ETTGLD +II + AV++ + + VF+ P G+ PE++K HGITDE + Sbjct: 46 VVDTETTGLDINTAKIINLAAVKIKGFKII-DYYNVFINP-GKSIDPESIKWHGITDEMV 103 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KDKP + EF F + + + H+ KFDV I+ EL L + Sbjct: 104 KDKPFVVEVMPEFVKFIRK--SVIVGHHIKFDVDMISKELMETFGCSLKQKCLDTMFIYT 161 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R + + + +H AL D+ ++V+ KM Sbjct: 162 RGIAKKNDHVGLDFLLDL-YKVRCNGRHTALGDAMATAEVFNKM 204 >gi|325524698|gb|EGD02688.1| putative DNA polymerase/helicase [Burkholderia sp. TJI49] Length = 374 Score = 61.9 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG S RI EIG VE+ + T+ + P G+ P +L GI++ Sbjct: 16 VFVDLETTGGSSVEHRITEIGVVEIGPLGVS--TWTSLVNP-GQSIPPFIQQLTGISEAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+S+ ++ + ++AHNA FD GF+ AE +R Sbjct: 73 VRDAPSFASLAPALFERLDG--KLFVAHNASFDRGFLRAEFERAGLAFNPDVLCT-VRLS 129 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 SR+ L++L +R+G+ ++H AL D+ LL + + Sbjct: 130 RALFPRESRHGLDALIERHGLV--PAARHRALADADLLWQFWRHL 172 >gi|253573313|ref|ZP_04850656.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14] gi|251846841|gb|EES74846.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14] Length = 247 Score = 61.9 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 5/173 (2%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 VFD+ETTG D I+ GA+++ T+ + P + ++L GIT E Sbjct: 65 VFDLETTGFHYHYGDEILSFGAIKVEGERITDEVYYSLAKPACQ-IPERIIELTGITPEM 123 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + PS EF F +++ R++DT+ I Sbjct: 124 AQSAPSLLEALREFMAFVDDRVLVAHGSAH---DKAFLDVALWKTTKAHLGHRVLDTMMI 180 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 AR+ P R + I +H AL DS + + ++ ++ + N Sbjct: 181 ARKLEPDRRISGSLDEWLAVYEIPVTKRHHALEDSKMTAQLWTALIQRLKEQN 233 >gi|293380779|ref|ZP_06626825.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Lactobacillus crispatus 214-1] gi|290922665|gb|EFD99621.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Lactobacillus crispatus 214-1] Length = 318 Score = 61.9 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 56/160 (35%), Gaps = 3/160 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 DIETTGL DRIIE+G V++ + ++ + + + + P + E Sbjct: 36 LDIETTGLYPYRDRIIELGGVKVRNGQIVDQ-YTNLVKFSKNNSVPAFITKLNGITEEQI 94 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 K + + + I +N FD+ F+ Q+ LD + Sbjct: 95 VKEGIPAEQAIREFREFIGDDVIIGYNVNFDLNFLYDLSQKYGLPVLDNDYVDVLRLART 154 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 N L +R GI H L DS VY Sbjct: 155 YYPRERHNRLLDCMQRAGIA--QVEAHHGLQDSLDTIKVY 192 >gi|317051245|ref|YP_004112361.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] gi|316946329|gb|ADU65805.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] Length = 206 Score = 61.9 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 1/166 (0%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD ETTGLD +D II IGAV + + T+ ++F P H +T + Sbjct: 32 VSFDCETTGLDVHHDEIISIGAVRIRGNQILTSEKLELFFNPQQEMRVESIKIHHLLTCD 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P I N + V + + I Sbjct: 92 LVDGVPLEEGIRQFLNFIGNRPLVGYYLEFDVAMVNRVLKPMLGITLPNRQIEVSGLYYD 151 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P DL + + + +KH AL D+ + + +Y+K+ Sbjct: 152 KKIAAIPQGNVDLRFDSIMHDLDLPPFAKHDALGDAIMTAMMYVKL 197 >gi|322384417|ref|ZP_08058103.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150775|gb|EFX44235.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 204 Score = 61.9 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 13/179 (7%) Query: 7 MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 MR+I VFD+ETTGLD D+I EI A+ + R +G K +PE + L G Sbjct: 1 MREIYTVFDLETTGLDPTKDQITEIAAIRTDLIREYGRLDVRITKNSGTKLTPEIINLTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I + ++ + + +L + + ++PS + Sbjct: 61 INESMMRGG---------IPEELAIPLLACFMSGSIVVAHHAPFDLSFLARYLVEPSSFV 111 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 T +++ P L ++ +R GI H A+ D ++ ++ + Sbjct: 112 CTRVLSKLVEPGESASLAAVAERRGIE--LTGHHRAMADVEATVKIFQQLKAEADALGI 168 >gi|253577523|ref|ZP_04854836.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14] gi|251843063|gb|EES71098.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14] Length = 951 Score = 61.9 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 84/214 (39%), Gaps = 7/214 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ V D ETTG + +D II++G + ++ ++ F+ P G P L GIT Sbjct: 1 MKYAVLDFETTG-NQSSDDIIQVGLAIIEPDRSISQVYRSFVKP-GVPIPPFITGLTGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE +KD P + E N+ + HN FD ++ + L + RI+DT Sbjct: 59 DEDVKDAPELDEVMMEMVPLLND--VVLVGHNVAFDFNYLQSALDKTGYL-PFTGRILDT 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGF 185 + + PS + + R H A D+ + +++K + Sbjct: 116 MDFLKILFPSLTSYQLGMVAAEFEVEHERP-HQADSDALATALIFLKCLEECDRLPLLTL 174 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + D F E+ + ++K +++ Sbjct: 175 QRLADLFAGEDSDLGWFFDAMVQEKEREALPSED 208 >gi|189467072|ref|ZP_03015857.1| hypothetical protein BACINT_03455 [Bacteroides intestinalis DSM 17393] gi|189435336|gb|EDV04321.1| hypothetical protein BACINT_03455 [Bacteroides intestinalis DSM 17393] Length = 256 Score = 61.5 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 8/191 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG DRI+EI +++ + ++ +T + + P A +HGI D Sbjct: 10 VFFDLETTGTSINVDRIVEICYLKVHPNGNEEAKTLR--INPEMH-IPEGASAVHGIYDA 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + + + N L+ L + +D Sbjct: 67 DVVDCPTFKEVARTIANDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDLSRRKFVDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + S ++ + H A D+ +V + + ++ Sbjct: 127 IFHK----LEQRTLSAAYKFYCGKNLEDAHTAAADTQATYEVLMAQLDRYPELQNDIAFL 182 Query: 189 EDRFFKEEKKT 199 + + Sbjct: 183 AEYSSFNKNVD 193 >gi|329961134|ref|ZP_08299389.1| exonuclease [Bacteroides fluxus YIT 12057] gi|328532072|gb|EGF58882.1| exonuclease [Bacteroides fluxus YIT 12057] Length = 256 Score = 61.5 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 68/173 (39%), Gaps = 8/173 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + +DRI+EI +++ + ++ ++T + + P E+ +HGI DE Sbjct: 10 VFFDLETTGTNINSDRIVEICYLKVYPNGNEESKT--MRINPEMH-IPAESSAVHGIYDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + + + + N L+ + + +D Sbjct: 67 DIADCPTFKEVARKIANDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMSRRKFVDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 I + S ++ + H A D+ +V + + ++ Sbjct: 127 IFHK----MEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLMAQLDRYGEL 175 >gi|27383129|ref|NP_774658.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA 110] gi|27356303|dbj|BAC53283.1| blr8018 [Bradyrhizobium japonicum USDA 110] Length = 298 Score = 61.5 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 61/228 (26%), Gaps = 9/228 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL---DYSKTN--RTFQVFLCPNGRKNSPEALKLHG 64 I+ D ETTGLD + D IIE+G V+ D TF F P+ Sbjct: 45 ILLDTETTGLDHRKDEIIELGMVKFDYTPDGRIVGVRDTFAAFDEPSAPIPPEITAITGI 104 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + +++ + D + + E + + Sbjct: 105 TDEMVAGQRIDDAAVSAFVDDAVITIAHNSGFDRKFAERYWPVFEHKAWGCSATEIDWRE 164 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + A+ + + R + + + ++ + Sbjct: 165 HGFAGAQLGYLLNGTGFFHQAHRAVDDCHALLEVLDFVLPTTGAPALALLLETARRPTLR 224 Query: 185 FKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 + F ++ R K F + + LD+ + Sbjct: 225 VWAEQTAFELKDSLKRRGYRWNDGSDGRPKSWFIDVNESGLDDEIAFL 272 >gi|281355577|ref|ZP_06242071.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC BAA-548] gi|281318457|gb|EFB02477.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC BAA-548] Length = 268 Score = 61.5 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 72/205 (35%), Gaps = 6/205 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIE+TG+ + DRI+EI +++ T T + P P A +HGI+D Sbjct: 12 VVFDIESTGVMPQRDRIVEIAVLKIFPDGHTQNTVRRL-NPE-MPIPPGATAIHGISDAD 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+F I + + + + + + +D ++ID +I Sbjct: 70 VADCPTFLLIAEKLFRYIEDCDLAGYNITGFDIPMLEAEFKRAGFTFKVDDRKVIDAYNI 129 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + +P + ++ HGA D+ +V + + ++ Sbjct: 130 FCKLYP----RTLTAAYQFFCGKELEGAHGAAADTAATFEVLLGQLEKHPELPRTVAELA 185 Query: 190 DRFFKEEKKTVPNISLLKRDKPLFT 214 D V K Sbjct: 186 DFSDLAGPDAVDRTRRFKWSDNEVI 210 >gi|288799990|ref|ZP_06405449.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] gi|288333238|gb|EFC71717.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] Length = 163 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 70/170 (41%), Gaps = 8/170 (4%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+ + D ET +S+ + IG V + + T +F + P S K+HG+ Sbjct: 1 MKDFVAIDFET--ANSERSSVCSIGIVIVRNGVIT-DSFYSTIQPEPNYYSYWCTKVHGL 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T ++ P F I+ + N ++AHN++FD + A + D D Sbjct: 58 TKSDTEESPCFHEIWKQIEPKI--GNLPFVAHNSRFDESCLKAVFRVYQMDYPDYIFFDT 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + R + L+++ + G + H AL D+ + + ++++ Sbjct: 116 LAAARRVLPHLPNHQLHTVAQECG--YCLDNHHHALADAEACAHIAMQIL 163 >gi|88855710|ref|ZP_01130373.1| DNA polymerase III subunit epsilon [marine actinobacterium PHSC20C1] gi|88815034|gb|EAR24893.1| DNA polymerase III subunit epsilon [marine actinobacterium PHSC20C1] Length = 417 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 73/204 (35%), Gaps = 9/204 (4%) Query: 9 KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D ETTGL + DR++E+ V L ++ + P ++H I Sbjct: 6 FAVIDFETTGLFAGGHDRVVEVAVVHLDAQGTVEGRWETLVNPGRDLGP---QRIHQIRA 62 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P+F I + D +AHNA FD+ F+ AEL+R + T+ Sbjct: 63 SDIVDAPAFEHIAGQLVDLLEG--RVLVAHNASFDLKFLVAELERTAAWMSTDFVSLCTM 120 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P + L C I H A D+ + + + + + Sbjct: 121 QLAREYLPGAGRALADCCAAL--DIQLDDAHRASADAFATAQLLAAYIESEANDEIWREH 178 Query: 188 -NEDRFFKEEKKTVPNISLLKRDK 210 + + N + L R Sbjct: 179 LDAALDHSWPTVSAENRAWLPRPP 202 >gi|322833483|ref|YP_004213510.1| ribonuclease T [Rahnella sp. Y9602] gi|321168684|gb|ADW74383.1| ribonuclease T [Rahnella sp. Y9602] Length = 238 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 77/206 (37%), Gaps = 13/206 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + +++ T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAKTDALLEIAAITLKMDEDGWLQSDETVHFHVEPFEGAILVPEALAFNG 90 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + N A +AHNA FD F+ A +R Sbjct: 91 IDPTNPLRGAVSEYEALHEIFKVIRKGMKEQNCNRAIIVAHNANFDHSFLMAAAERAGLK 150 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D+ ++++ +++ Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACISAGIVFDSSQAHSALYDTERTAELFCELVN 210 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 ++ D ++E + N Sbjct: 211 RWKRLGGWPLALSDEEVEDETASEEN 236 >gi|325285402|ref|YP_004261192.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga lytica DSM 7489] gi|324320856|gb|ADY28321.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga lytica DSM 7489] Length = 258 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 84/222 (37%), Gaps = 19/222 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG++ DR++EI +++ + +K ++T+ + P E + +HGI++E Sbjct: 11 FFDLETTGINVAKDRVVEISILKVYPNGNKESKTW--LVNPEMH-IPDEVVAVHGISNEK 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P+F+ + E + + + + L+ + + +D +I Sbjct: 68 VANEPTFAQLSKEIYAMIKDCDLGGYNSDRFDIPLLAEEMLRAGVDFDMKNTVSVDVQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + ++ + H A D++ +V + ++ K Sbjct: 128 FFK----MEKRTLEAAYKFYCNKELTNAHSAAADTNATFEVLKSQLDRYPELENDIKKLS 183 Query: 190 DRFFKE-----------EKKTVPNISLLKRDKPLFTRITKEE 220 + ++ ++ P S K + ++E Sbjct: 184 EFTTRKKFADFAGFIIIDQDGDPAFSFGKHKGKKVDEVLEKE 225 >gi|53728911|ref|ZP_00134639.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207670|ref|YP_001052895.1| ribonuclease T [Actinobacillus pleuropneumoniae L20] gi|165975638|ref|YP_001651231.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250752|ref|ZP_07336948.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251713|ref|ZP_07533617.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|166228560|sp|A3MYQ4|RNT_ACTP2 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|126096462|gb|ABN73290.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875739|gb|ABY68787.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302650422|gb|EFL80582.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860799|gb|EFM92808.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 218 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 14/197 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET GL+++ D ++E+ A+ + + ++ + P G +P++LK +G Sbjct: 21 VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + P + Q A +AHNA FD F+ A ++RIN Sbjct: 81 IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQAAVKRINAK 140 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I + H AL D+ ++++ M+ Sbjct: 141 RDPFHPFAMFDTATLAGFMYGQTVLVKACQMAKIPFDGKQAHSALYDTEKTTELFCAMVN 200 Query: 177 GGSQI-NFGFKTNEDRF 192 + F ++ + Sbjct: 201 RLKDLGGFPLVSDSESN 217 >gi|327439003|dbj|BAK15368.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046] Length = 251 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 9/102 (8%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPN-------GRKNSPEAL 60 +V DIETTG + + D+I+EI A+++ + +T F F+ P + E + Sbjct: 87 YVVVDIETTGGSAARGDKIVEIAALKIR-HGETVDLFHRFVNPEKPIKNSHIHGITNERV 145 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 K + +F ++A + Sbjct: 146 KDEQTISPVIHAFKAFLGDLPIVSHHIGFDWYSFLALEFFRN 187 >gi|321272267|gb|ADW80152.1| leucine-rich repeat family protein [Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1] gi|321272324|gb|ADW80206.1| leucine-rich repeat family protein [Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB] Length = 258 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 19/30 (63%), Positives = 21/30 (70%), Gaps = 1/30 (3%) Query: 5 NKMRKIVFDIETTGLDSK-NDRIIEIGAVE 33 +K R+IV D ETTGL K RIIEIG VE Sbjct: 206 SKQREIVLDTETTGLSVKFGHRIIEIGCVE 235 >gi|315103201|gb|EFT75177.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA2] Length = 658 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GITD + Sbjct: 95 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-SIPASVQVLTGITDVMV 151 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS +++ + + ++ +AHNA+FD+GF+ + + Sbjct: 152 RSAPSLNAVLPSWSE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 196 >gi|314981011|gb|EFT25105.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA3] gi|315093023|gb|EFT64999.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL060PA1] Length = 597 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GITD + Sbjct: 34 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-SIPASVQVLTGITDVMV 90 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS +++ + + ++ +AHNA+FD+GF+ + + Sbjct: 91 RSAPSLNAVLPSWSE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 135 >gi|314966430|gb|EFT10529.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA2] gi|315091670|gb|EFT63646.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA4] gi|327327874|gb|EGE69650.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL103PA1] Length = 590 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GITD + Sbjct: 27 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-SIPASVQVLTGITDVMV 83 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS +++ + + ++ +AHNA+FD+GF+ + + Sbjct: 84 RSAPSLNAVLPSWSE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 128 >gi|282854298|ref|ZP_06263635.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139] gi|282583751|gb|EFB89131.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139] Length = 633 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GITD + Sbjct: 70 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-SIPASVQVLTGITDVMV 126 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS +++ + + ++ +AHNA+FD+GF+ + + Sbjct: 127 RSAPSLNAVLPSWSE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 171 >gi|257869605|ref|ZP_05649258.1| DNA polymerase III PolC [Enterococcus gallinarum EG2] gi|257803769|gb|EEV32591.1| DNA polymerase III PolC [Enterococcus gallinarum EG2] Length = 1449 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52 IVFD+ETTGL + D IIE+ AV + + +F F+ P Sbjct: 423 YIVFDVETTGLSAVYDTIIELAAVRMHKGNVEG-SFDEFIDPGH 465 >gi|160882256|ref|ZP_02063259.1| hypothetical protein BACOVA_00202 [Bacteroides ovatus ATCC 8483] gi|260173820|ref|ZP_05760232.1| DNA Pol III epsilon chain [Bacteroides sp. D2] gi|299146573|ref|ZP_07039641.1| exonuclease [Bacteroides sp. 3_1_23] gi|315922083|ref|ZP_07918323.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156112345|gb|EDO14090.1| hypothetical protein BACOVA_00202 [Bacteroides ovatus ATCC 8483] gi|298517064|gb|EFI40945.1| exonuclease [Bacteroides sp. 3_1_23] gi|313695958|gb|EFS32793.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 259 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 8/191 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + DRI+EI +++ + ++ +T + + P + +HGI D Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTLR--INPEMH-IPEASSAIHGIYDA 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + + N L+ + + +D Sbjct: 67 DVVDCPTFKEVAKNIARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMTKRKFVDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + S ++ + H A D+ +V + S + Sbjct: 127 IFHK----MEQRTLSAAYKFYCDKNLEDAHTAEADTRATYEVLKAQLDRYSDLQNDIAFL 182 Query: 189 EDRFFKEEKKT 199 D + Sbjct: 183 ADYSSFSKNVD 193 >gi|50842208|ref|YP_055435.1| hypothetical protein PPA0720 [Propionibacterium acnes KPA171202] gi|50839810|gb|AAT82477.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Propionibacterium acnes KPA171202] gi|314923288|gb|EFS87119.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL001PA1] gi|315107037|gb|EFT79013.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA1] Length = 633 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GITD + Sbjct: 70 VVDLETTGTS-EGSQITEIGAVKVCGGRVEGE-FQTLVCPTG-SIPASVQVLTGITDVMV 126 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + PS +++ + + ++ +AHNA+FD+GF+ + + Sbjct: 127 RSAPSLNAVLPSWSE--FSRSTALVAHNARFDIGFLQRAYAQHDYPW 171 >gi|290343478|ref|YP_003494845.1| hypothetical protein OTV1_005 [Ostreococcus tauri virus 1] gi|260160893|emb|CAY39593.1| hypothetical protein OTV1_005 [Ostreococcus tauri virus 1] Length = 446 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 77/250 (30%), Gaps = 36/250 (14%) Query: 9 KIVFDIETTG------------LDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 + +D ET G L +D RI+ + AV+ + TF + P G + Sbjct: 8 YVAWDTETCGIPKTRVRPTRENLSKFDDARIVSLSAVKFSSRGREIDTFNRIIKPIGYQV 67 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 + P F + F EF +F ++ AHN+ FD G I EL RI Sbjct: 68 GATHIHGITHEYAEEHGVP-FKTAFQEFIEFIGDRCNILCAHNSLFDEGIIGHELLRIGL 126 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIK 173 DP + + L Y + H +L D+ VY Sbjct: 127 DPNKDFLDKYIFNCTHEMYKKRFLSSIKLTNLYKDIFGKEFDNAHNSLADARACGQVYPY 186 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 +M + + + I+ KR + L EE Sbjct: 187 LMGNTKRELKPLPIKKVIIGASAVASAIGINQYKRPQELV-----EE------------- 228 Query: 234 NAIWDRYISS 243 +W +Y Sbjct: 229 --LWKKYSPQ 236 >gi|237715177|ref|ZP_04545658.1| DNA Pol III epsilon chain [Bacteroides sp. D1] gi|262408870|ref|ZP_06085415.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647646|ref|ZP_06725213.1| exonuclease [Bacteroides ovatus SD CC 2a] gi|294810715|ref|ZP_06769363.1| exonuclease [Bacteroides xylanisolvens SD CC 1b] gi|298481744|ref|ZP_06999934.1| exonuclease [Bacteroides sp. D22] gi|229445010|gb|EEO50801.1| DNA Pol III epsilon chain [Bacteroides sp. D1] gi|262353081|gb|EEZ02176.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637012|gb|EFF55463.1| exonuclease [Bacteroides ovatus SD CC 2a] gi|294442048|gb|EFG10867.1| exonuclease [Bacteroides xylanisolvens SD CC 1b] gi|295087704|emb|CBK69227.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Bacteroides xylanisolvens XB1A] gi|298271966|gb|EFI13537.1| exonuclease [Bacteroides sp. D22] Length = 259 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 8/191 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + DRI+EI +++ + ++ +T + + P + +HGI D Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTLR--INPEMH-IPEASSAIHGIYDA 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + + N L+ + + +D Sbjct: 67 DVADCPTFKEVAKNIARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMTKRKFVDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + S ++ + H A D+ +V + S + Sbjct: 127 IFHK----MEQRTLSAAYKFYCDKNLEDAHTAEADTRATYEVLKAQLDRYSDLQNDIAFL 182 Query: 189 EDRFFKEEKKT 199 D + Sbjct: 183 ADYSSFSKNVD 193 >gi|222081448|ref|YP_002540811.1| DNA polymerase III subunit epsilon [Agrobacterium radiobacter K84] gi|221726127|gb|ACM29216.1| polymerase epsilon subunit protein [Agrobacterium radiobacter K84] Length = 340 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 74/229 (32%), Gaps = 30/229 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 ++ D ETTGL+ +ND IIEIG V D+ V+ L G PE +L GI Sbjct: 89 VILDTETTGLNHRNDEIIEIGLVAFTFDDFGHIGDVIGVYGGLQQPGTPIPPEITRLTGI 148 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE ++ I + IAHNA FD F A Sbjct: 149 TDEMVEG----QMIDMQQVRRMVAPADLVIAHNAGFDRPFCEAFSNVFATKAW------- 197 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-----------YIKM 174 S++ + + L G H A+ D L +V + ++ Sbjct: 198 ACSVSEIDWNARGFEGTKLGYLIGQAGYFHEGHRAIDDCFALLEVLDRNVGEEETPFAEL 257 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKE 219 + Q F ++ R K + I ++ Sbjct: 258 VRTSGQSRVRIFAEHSPFEMKDHLKGRGYRWSDGSDGRPKSWWIEIDED 306 >gi|153808235|ref|ZP_01960903.1| hypothetical protein BACCAC_02523 [Bacteroides caccae ATCC 43185] gi|149129138|gb|EDM20354.1| hypothetical protein BACCAC_02523 [Bacteroides caccae ATCC 43185] Length = 259 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 8/191 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + DRI+EI +++ + ++ +T + + P + +HGI D Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTLR--INPEMH-IPEASSAVHGIYDA 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + + N L+ + + +D Sbjct: 67 DVADCPTFKEVAKNIARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMSKRKFVDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + S ++ + H A D+ +V + + Sbjct: 127 IFHK----MEQRTLSAAYKFYCEKNLEDAHTAEADTRATYEVLKAQLDRYPDLQNDIAFL 182 Query: 189 EDRFFKEEKKT 199 D + Sbjct: 183 ADYSSFSKNVD 193 >gi|313156971|gb|EFR56403.1| exonuclease [Alistipes sp. HGB5] Length = 255 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 73/200 (36%), Gaps = 9/200 (4%) Query: 2 IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 ++ N R I+F D+ETTG+D+ DRI+EI +++ D + +T L P EA Sbjct: 1 MKLNLKRPIIFFDLETTGVDTAKDRIVEISMAKIMPDGEEIVKT--RKLNPEMH-IPEEA 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGITDE +KD P+F+ + F + N + L+ Sbjct: 58 TAIHGITDEDVKDCPTFAQVAKSLEQFIRGCDFGGFNSNRFDLPVLVEEFLRAGVDVDFK 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ID +I + ++ H A D+ +V + Sbjct: 118 RRKFIDVQNIFHK----KEQRTLVAAYKFYCDKDLDDAHSAEADTLATYEVLKAQLERYP 173 Query: 180 QINFGFKTNEDRFFKEEKKT 199 + + + E Sbjct: 174 DLENDIDKLAEFSTRAETAD 193 >gi|239631939|ref|ZP_04674970.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526404|gb|EEQ65405.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 309 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 8/173 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 IR+ IV DIETTGL S +D II++ A+++ + TF ++ P+ + Sbjct: 38 IRRKLYDYIVLDIETTGLSSVSDDIIQLSALKVKEDKVI-DTFDSYVKPST-SIPENVVY 95 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + GIT+ +++ P I +F + + HN + ++ Sbjct: 96 ITGITNSTVENAPEIFEIMPKFVS--FTEGMPLVGHNIIR-FDIPFIVNNGFYYEDIEAL 152 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P L +L + +G S H AL D VY + Sbjct: 153 DTWRLAKNKDFPEPLKNLKLPTLKEYFG---ISGSSHNALDDCKTTITVYRHL 202 >gi|190149453|ref|YP_001967978.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307260640|ref|ZP_07542332.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262772|ref|ZP_07544399.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914584|gb|ACE60836.1| DNA polymerase III, epsilon subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306869717|gb|EFN01502.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871917|gb|EFN03634.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 218 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 14/197 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET GL+++ D ++E+ A+ + + ++ + P G +P++LK +G Sbjct: 21 VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + P + Q A +AHNA FD F+ A ++RIN Sbjct: 81 IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQAAVKRINAK 140 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I + H AL D+ ++++ M+ Sbjct: 141 RDPFHPFAMFDTATLAGFMYGQTVLVKACQMAKIPFDDKQAHSALYDTEKTTELFCAMVN 200 Query: 177 GGSQI-NFGFKTNEDRF 192 + F ++ + Sbjct: 201 RLKDLGGFPLVSDSESN 217 >gi|300934175|ref|ZP_07149431.1| putative exonuclease [Corynebacterium resistens DSM 45100] Length = 214 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+ D+ETTGL+ KN RIIE+ + + D + + L P S L GIT+ Sbjct: 18 IIIDVETTGLEPKNHRIIEVATLTVRDAQPI-NSQRWLLNPEDH-ISEFITDLTGITNAH 75 Query: 70 LKDKPSFSSIFSEFWDFFNE 89 + P+F S+ E N Sbjct: 76 VAKCPTFRSVAEEIMSVLNP 95 >gi|319950676|ref|ZP_08024577.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4] gi|319435659|gb|EFV90878.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4] Length = 547 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 64/169 (37%), Gaps = 4/169 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG D I EIGAV + + F+ +G +L GI E Sbjct: 38 FVVVDLETTGTRPGGDEITEIGAVRIRGG-EVQAELSTFVSIDGV-LPGHISRLTGIAPE 95 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L PS + + F + + A +AHNA+FD+GF+ A DP + Sbjct: 96 DLVGAPSLGEVMATFLE--FSRGAVLVAHNARFDLGFLRAAAAATGHRWPDPPSVCTLAL 153 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R H + + H AL D+ DV ++ Sbjct: 154 ARRVLHRGETRGHRLGVLAAHLGATVEPNHRALQDARATVDVLHALISR 202 >gi|163787973|ref|ZP_02182419.1| DNA Pol III Epsilon Chain [Flavobacteriales bacterium ALC-1] gi|159876293|gb|EDP70351.1| DNA Pol III Epsilon Chain [Flavobacteriales bacterium ALC-1] Length = 258 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 74/222 (33%), Gaps = 19/222 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG++ DRI+EI +++ + + +T+ + P E +HGI+D Sbjct: 11 FFDLETTGINISKDRIVEISILKVHPNGKENTKTW--VVNPE-MPIPAEVTAIHGISDAD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + DKP+F + E ++ + + N + + + +D Sbjct: 68 VADKPTFKELSKEIYNLIKDSDLGGFNSNRFDI----PLLAEEMLRADIDFDMKGMQSID 123 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK--- 186 + S ++ + H A D+ +V + + K Sbjct: 124 VQTIFHKMEQRTLSAAYKFYCDKNLDDAHSAEADTKATYEVLKAQLSKYEDLENDTKFLA 183 Query: 187 --------TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + F K+ S K + ++E Sbjct: 184 EFSSRKKFADFAGFLIFNKQGEECFSFGKHKGKRVVDVMEQE 225 >gi|119717352|ref|YP_924317.1| hypothetical protein Noca_3128 [Nocardioides sp. JS614] gi|119538013|gb|ABL82630.1| DNA polymerase III, epsilon subunit [Nocardioides sp. JS614] Length = 601 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 74/194 (38%), Gaps = 9/194 (4%) Query: 11 VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG ++ I EIGAV++ FQ + P + L GI++ Sbjct: 32 VVDLETTGGSAEGGAMITEIGAVKVRGGEVLGE-FQTLVNP-RTEIPAFIAVLTGISNSM 89 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR----IID 125 + D P + F + + +AHNA FDVGF+ ++ + + Sbjct: 90 VADAPPVEAALPAFLE--FAAGSVLVAHNAPFDVGFLRYFAEQQGRPWPGFEVVDTARLA 147 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++R P+ + + T +HR+ A +L + ++ G Sbjct: 148 RRVVSRDDAPNCKLSSLAKAFGSTTTPNHRALSDARATVDVLHGLMERLGGVGVHTLEEL 207 Query: 186 KTNEDRFFKEEKKT 199 +T R +++ Sbjct: 208 QTFSSRVSSAQRRK 221 >gi|314929290|gb|EFS93121.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL044PA1] Length = 597 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GITD + Sbjct: 34 VVDLETTGTG-EGAQITEIGAVKVRGGRVEGE-FQTLVCPTG-PIPASVQVLTGITDAMV 90 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + P S++ + + ++ +AHNA+FD+GF+ + N Sbjct: 91 RPAPPLSAVLPSWSE--FSRSTVLVAHNARFDIGFLKRAYAQHNYPW 135 >gi|313837498|gb|EFS75212.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA2] gi|314971705|gb|EFT15803.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA3] gi|328906955|gb|EGG26721.1| GIY-YIG catalytic domain protein [Propionibacterium sp. P08] Length = 598 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + +I EIGAV++ FQ +CP G L GITD + Sbjct: 35 VVDLETTGTG-EGAQITEIGAVKVRGGRVEGE-FQTLVCPTG-PIPASVQVLTGITDAMV 91 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + P S++ + + ++ +AHNA+FD+GF+ + N Sbjct: 92 RPAPPLSAVLPSWSE--FSRSTVLVAHNARFDIGFLKRAYAQHNYPW 136 >gi|297559415|ref|YP_003678389.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843863|gb|ADH65883.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 339 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 59/179 (32%), Gaps = 14/179 (7%) Query: 7 MR-----KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MR V D+ETTGL+ + RI+EI V + K F + P + Sbjct: 16 MRAADLEYAVLDMETTGLEPREGARIVEIAVVRVRGDGKFVEEFSTLIDP---RAPVGGR 72 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + HGI + P+ + + + + A + HN F+ F+ + L Sbjct: 73 EFHGIGEGDTVGAPTAAQVVPRLTELLSG--AVVVGHNLDFEQRFLA---SELVPAGLPT 127 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + A R +H AL D+ + + +M+ Sbjct: 128 GQAGLCTLRALRSQVELERYSLPKASHRLSGDWPTGQHTALGDARACAKLLAEMLTNAP 186 >gi|255030410|ref|ZP_05302361.1| DNA polymerase III PolC [Listeria monocytogenes LO28] Length = 459 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 4/103 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 344 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 401 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 +K + F + + +AHNA FD+GFIN + Sbjct: 402 MVKGSDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYE 442 >gi|261343971|ref|ZP_05971616.1| ribonuclease T [Providencia rustigianii DSM 4541] gi|282568361|gb|EFB73896.1| ribonuclease T [Providencia rustigianii DSM 4541] Length = 214 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 13/195 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + K D ++EI A+ ++ + + T + P G P AL G Sbjct: 20 VVIDVETGGFNPKTDGLLEIAAITLKMDNEGWLSIDETLHFHVEPFEGANLEPAALAFTG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A +AHNA FD F+ +R Sbjct: 80 IDPTNPLRGAVSEYDALHAIFKTIRKGMKNTDCNRAIMVAHNANFDHSFVMNAAERSGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI + HGAL D++ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVFGQTILAKACVTAGIPFDGKQAHGALYDTNRTALLFCELVN 199 Query: 177 GGSQINFGFKTNEDR 191 ++ E Sbjct: 200 KWKKLGGWPLPAESE 214 >gi|303252005|ref|ZP_07338176.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247168|ref|ZP_07529219.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649435|gb|EFL79620.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856306|gb|EFM88458.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 218 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 14/197 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET GL+++ D ++E+ A+ + + ++ + P G +P++LK +G Sbjct: 21 VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + P + Q A +AHNA FD F+ A ++RIN Sbjct: 81 IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQAAVKRINAK 140 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I + H AL D+ ++++ M+ Sbjct: 141 RDPFHPFAMFDTATLAGFMYGQTVLVKACQMAKIPFDGKQAHSALYDTEKTTELFCAMVN 200 Query: 177 GGSQI-NFGFKTNEDRF 192 + F ++ + Sbjct: 201 RLKDLGGFPLVSDSESN 217 >gi|145588723|ref|YP_001155320.1| DNA polymerase III subunit epsilon [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047129|gb|ABP33756.1| Exonuclease, RNase T and DNA polymerase III [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 218 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51 +V D ETTGL+ D+II IGAV+++ + T+ ++ + P+ Sbjct: 42 WVVIDCETTGLNVAQDQIISIGAVKIVGNQLITSERLELLVKPD 85 >gi|212723090|ref|NP_001131224.1| hypothetical protein LOC100192533 [Zea mays] gi|194690922|gb|ACF79545.1| unknown [Zea mays] Length = 315 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 9/121 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTG ++DRIIE +L+ N TFQ + P + ++ Sbjct: 117 VFDIETTGFSRRDDRIIEFAVRDLMGGK--NNTFQTLINPEKDVKNTYVHGINNSMLCRP 174 Query: 71 KDKPSFSSIFSEFWDFFNEQNA-----EWIAHN-AKFDVGFINAELQRINKDPLDPSRII 124 D P F I + + W+AHN FDV F+ E +R + + Sbjct: 175 -DVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGDWLFV 233 Query: 125 D 125 D Sbjct: 234 D 234 >gi|242239125|ref|YP_002987306.1| ribonuclease T [Dickeya dadantii Ech703] gi|242131182|gb|ACS85484.1| ribonuclease T [Dickeya dadantii Ech703] Length = 225 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 72/204 (35%), Gaps = 13/204 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV ++ D + + T + P G +P+AL +G Sbjct: 22 VVIDVETAGFNAQTDALLEIAAVTLKMDDNGWLQPDETLHFHIEPFEGAILNPDALAFNG 81 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + +AHNA FD F+ A +R Sbjct: 82 IDPTNPLRGAVSEYEALHEIFKMVRKGIKDKGCNRGIVVAHNAAFDHSFLMAAAERCGLK 141 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + + L C I H AL D+ ++++ +++ Sbjct: 142 RNPFHPFVTFDTTSLSGLVLGQTVLAKACITADILFDSSQAHSALYDTQRTAELFCELVN 201 Query: 177 GGSQINFGFKTNEDRFFKEEKKTV 200 ++ ED Sbjct: 202 RWKRLGGWPLAVEDSDNDSAVNAN 225 >gi|257785157|ref|YP_003180374.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469] gi|257473664|gb|ACV51783.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469] Length = 978 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGL K +IEI A +L R FQ F+ P G E L ITDE Sbjct: 20 VVLDTETTGLSFKKCSLIEISAAKLSGREIIER-FQTFVDP-GCPIPEEITTLTSITDED 77 Query: 70 LKDKP 74 +K P Sbjct: 78 VKGAP 82 >gi|126663019|ref|ZP_01734017.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38] gi|126624677|gb|EAZ95367.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38] Length = 1512 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 76/243 (31%), Gaps = 23/243 (9%) Query: 9 KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL D R I+I + + P G + Sbjct: 2 YLIFDTETTGLPRSWSAPITDTDNWPRCIQIAWQLHDEMGNLIEHQDYLVKPEGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR------ 112 A ++HGI+ E ++ S E ++ + + N FDV + E R Sbjct: 62 AERIHGISTELALEQGILLSEVLEKFNIALSKTKFIVGQNVGFDVNIMGCEFHRLNFGSD 121 Query: 113 ---INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + L + + + + +Y H A D + Sbjct: 122 LSKMPVLDTCTEVTANLLKLPGGRGGRFKLPTLTELHQYLFNQPFAEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 +++++ + F +K + I L+ + + EE+ ++ Sbjct: 182 CFLELIKREIFTKEELDVTPEYFRSFREKNLGEIQLIGLKHINLKKAS-EEI---RARLK 237 Query: 230 TLG 232 + Sbjct: 238 KIE 240 >gi|322515227|ref|ZP_08068225.1| ribonuclease T [Actinobacillus ureae ATCC 25976] gi|322118732|gb|EFX90938.1| ribonuclease T [Actinobacillus ureae ATCC 25976] Length = 218 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 78/198 (39%), Gaps = 14/198 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET GL+++ D ++E+ A+ + + ++ + P G +P++LK +G Sbjct: 21 VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + P + Q A +AHNA FD F+ A ++RIN Sbjct: 81 IDIDNPLRGAVPENIAIPEMFKMVRRAMKDQGCQRAVIVAHNATFDQAFVQAAVKRINAK 140 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I+ + H AL D+ ++++ M+ Sbjct: 141 RDPFHPFAMFDTATLAGFMYGQTVLVKACQMAKISFDGKQAHSALYDTEKTTELFCAMVN 200 Query: 177 GGSQI-NFGFKTNEDRFF 193 + F ++ + Sbjct: 201 RLKDLGGFPLVSDSESDA 218 >gi|46445870|ref|YP_007235.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia amoebophila UWE25] gi|46399511|emb|CAF22960.1| putative DNA polymerase III epsilon chain [Candidatus Protochlamydia amoebophila UWE25] Length = 249 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 4/92 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I KNK I D ETTGLD + DRIIE+ AV D ++ + + P ++ Sbjct: 4 IEKNK--FICIDCETTGLDPQQDRIIEV-AVMCFDGNQVYAQMESLINPEC-PIPETSIA 59 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE 93 +H IT + +KDKP+ + + + + ++ Sbjct: 60 IHHITQDMVKDKPTINHVLPQILELISDHIII 91 >gi|321309652|ref|YP_004191981.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str. Langford 1] gi|319801496|emb|CBY92142.1| DNA polymerase III, alpha subunit, Gram-positive type (fragment) [Mycoplasma haemofelis str. Langford 1] Length = 216 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 61/188 (32%), Gaps = 3/188 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG K I EI + + + ++ + F+ R P + Sbjct: 20 YCVLDIETTGTSYKTSEITEISIHKYRNGKRVDK-YHSFVK-ISRPLPPFIRIFTPHITD 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + +AHN + IIDTL Sbjct: 78 ELLAREGKDLDVVIKEVKDFTKGSILVAHNGVTFDLLFLKAACIKYGLKPLSNPIIDTLR 137 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R P+ + L +C+R + H A D +L V+ VG +I + Sbjct: 138 LSRSTFPNERYHTLGDVCRRMQVNYDEDRAHSADYDVDVLWQVFWNFAVGLKKIGVNLED 197 Query: 188 NEDRFFKE 195 + Sbjct: 198 GLQEANEA 205 >gi|308234286|ref|ZP_07665023.1| CRISPR-associated endoribonuclease Cas2 [Atopobium vaginae DSM 15829] Length = 297 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 3/142 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++ DIET+GL+ +D+IIEIGA+ + D + +Q + + SP +L G+TD Sbjct: 129 KFVILDIETSGLNETDDKIIEIGAIRICDKQVDD--YQCLIKRDSLNLSPAITQLTGLTD 186 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L ++ ++ F + +N FD+ FIN EL+ +N++ LD I Sbjct: 187 IELANRGVNPNLALNGLKQFIGHLPV-LGYNIAFDMRFINNELRSMNEELLDNREIDVMR 245 Query: 128 SIARRKHPSSRNDLNSLCKRYG 149 I + K L+++ K YG Sbjct: 246 FIKKEKMFLESYALDNVLKVYG 267 >gi|307249394|ref|ZP_07531386.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858580|gb|EFM90644.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 218 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 14/197 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET GL+++ D ++E+ A+ + + ++ + P G +P++LK +G Sbjct: 21 VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + P + Q A +AHNA FD F+ A ++RIN Sbjct: 81 IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQAAVKRINAK 140 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I + H AL D+ ++++ M+ Sbjct: 141 RDPFHPFAMFDTATLTGFMYGQTVLVKACQMAKIPFDGKQAHSALYDTEKTTELFCAMVN 200 Query: 177 GGSQI-NFGFKTNEDRF 192 + F ++ + Sbjct: 201 RLKDLGGFPLVSDSESN 217 >gi|260893685|ref|YP_003239782.1| DNA-directed DNA polymerase [Ammonifex degensii KC4] gi|260865826|gb|ACX52932.1| DNA-directed DNA polymerase [Ammonifex degensii KC4] Length = 233 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 + FD+ETTGL D II +GAV L F + P R Sbjct: 47 FVAFDLETTGLKPGAGDEIIALGAVRLRGNELLYPAFDQLVRPGRRVPP 95 >gi|109898818|ref|YP_662073.1| DNA polymerase III subunit epsilon [Pseudoalteromonas atlantica T6c] gi|109701099|gb|ABG41019.1| Exonuclease, RNase T and DNA polymerase III [Pseudoalteromonas atlantica T6c] Length = 251 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 4/114 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+ K D I+ IG V + + + + P+ + +++ +HGIT Sbjct: 61 VALDFETTGLNPKTDSIVSIGLVAMTVKRIRCQEAQHWIIKPDTELKT-KSVVIHGITHS 119 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + D PSF+ + E +AH+ +V F+N+ L+ + + Sbjct: 120 DVADAPSFNRVLDELLQHLQG--KVVVAHHKDIEVRFLNSALKHYIGEEIVFPC 171 >gi|15924884|ref|NP_372418.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus subsp. aureus Mu50] gi|15927468|ref|NP_375001.1| hypothetical protein SA1710 [Staphylococcus aureus subsp. aureus N315] gi|21283564|ref|NP_646652.1| hypothetical protein MW1835 [Staphylococcus aureus subsp. aureus MW2] gi|49484135|ref|YP_041359.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA252] gi|49486713|ref|YP_043934.1| putative exonuclease [Staphylococcus aureus subsp. aureus MSSA476] gi|82751547|ref|YP_417288.1| DNA polymerase III alpha chain [Staphylococcus aureus RF122] gi|148268366|ref|YP_001247309.1| exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JH9] gi|150394428|ref|YP_001317103.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JH1] gi|156980210|ref|YP_001442469.1| hypothetical protein SAHV_1879 [Staphylococcus aureus subsp. aureus Mu3] gi|253316903|ref|ZP_04840116.1| hypothetical protein SauraC_12304 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253729653|ref|ZP_04863818.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734998|ref|ZP_04869163.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus TCH130] gi|255006681|ref|ZP_05145282.2| hypothetical protein SauraM_09445 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257426026|ref|ZP_05602448.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus 55/2053] gi|257428699|ref|ZP_05605094.1| exonuclease [Staphylococcus aureus subsp. aureus 65-1322] gi|257431309|ref|ZP_05607685.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus 68-397] gi|257434027|ref|ZP_05610378.1| DNA polymerase subunit III alpha [Staphylococcus aureus subsp. aureus E1410] gi|257436931|ref|ZP_05612973.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus M876] gi|257793752|ref|ZP_05642731.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9781] gi|258408894|ref|ZP_05681176.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763] gi|258421002|ref|ZP_05683933.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9719] gi|258422971|ref|ZP_05685870.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9635] gi|258430026|ref|ZP_05688396.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9299] gi|258443456|ref|ZP_05691798.1| DNA polymerase subunit III alpha [Staphylococcus aureus A8115] gi|258445314|ref|ZP_05693505.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A6300] gi|258447878|ref|ZP_05696012.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A6224] gi|258453311|ref|ZP_05701296.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A5937] gi|269203547|ref|YP_003282816.1| exonuclease [Staphylococcus aureus subsp. aureus ED98] gi|282894561|ref|ZP_06302789.1| exonuclease [Staphylococcus aureus A8117] gi|282904525|ref|ZP_06312410.1| exonuclease [Staphylococcus aureus subsp. aureus C160] gi|282906298|ref|ZP_06314150.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus Btn1260] gi|282909214|ref|ZP_06317030.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911519|ref|ZP_06319319.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus WBG10049] gi|282914692|ref|ZP_06322477.1| exonuclease [Staphylococcus aureus subsp. aureus M899] gi|282917241|ref|ZP_06324996.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus D139] gi|282919729|ref|ZP_06327461.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus C427] gi|282925133|ref|ZP_06332793.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus C101] gi|282928067|ref|ZP_06335674.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A10102] gi|283771044|ref|ZP_06343935.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus H19] gi|283958655|ref|ZP_06376101.1| exonuclease [Staphylococcus aureus subsp. aureus A017934/97] gi|293507769|ref|ZP_06667611.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus 58-424] gi|293510786|ref|ZP_06669488.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus M809] gi|293539326|ref|ZP_06672005.1| exonuclease [Staphylococcus aureus subsp. aureus M1015] gi|295407274|ref|ZP_06817073.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A8819] gi|295428476|ref|ZP_06821103.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus EMRSA16] gi|296276903|ref|ZP_06859410.1| exonuclease [Staphylococcus aureus subsp. aureus MR1] gi|297208922|ref|ZP_06925326.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246200|ref|ZP_06930051.1| exonuclease [Staphylococcus aureus A8796] gi|297590053|ref|ZP_06948693.1| exonuclease [Staphylococcus aureus subsp. aureus MN8] gi|300913021|ref|ZP_07130459.1| exonuclease [Staphylococcus aureus subsp. aureus TCH70] gi|13701687|dbj|BAB42980.1| SA1710 [Staphylococcus aureus subsp. aureus N315] gi|14247666|dbj|BAB58056.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus subsp. aureus Mu50] gi|21205005|dbj|BAB95700.1| MW1835 [Staphylococcus aureus subsp. aureus MW2] gi|49242264|emb|CAG40971.1| putative exonuclease [Staphylococcus aureus subsp. aureus MRSA252] gi|49245156|emb|CAG43622.1| putative exonuclease [Staphylococcus aureus subsp. aureus MSSA476] gi|82657078|emb|CAI81515.1| probable DNA polymerase III alpha chain [Staphylococcus aureus RF122] gi|147741435|gb|ABQ49733.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JH9] gi|149946880|gb|ABR52816.1| Exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JH1] gi|156722345|dbj|BAF78762.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253726594|gb|EES95323.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727180|gb|EES95909.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus TCH130] gi|257271169|gb|EEV03326.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus 55/2053] gi|257274343|gb|EEV05855.1| exonuclease [Staphylococcus aureus subsp. aureus 65-1322] gi|257277958|gb|EEV08614.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus 68-397] gi|257280953|gb|EEV11097.1| DNA polymerase subunit III alpha [Staphylococcus aureus subsp. aureus E1410] gi|257283720|gb|EEV13845.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus M876] gi|257787724|gb|EEV26064.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9781] gi|257840341|gb|EEV64803.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763] gi|257842950|gb|EEV67368.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9719] gi|257846758|gb|EEV70773.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9635] gi|257849620|gb|EEV73588.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9299] gi|257851341|gb|EEV75281.1| DNA polymerase subunit III alpha [Staphylococcus aureus A8115] gi|257855832|gb|EEV78756.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A6300] gi|257858810|gb|EEV81679.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A6224] gi|257864519|gb|EEV87262.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A5937] gi|262075837|gb|ACY11810.1| exonuclease [Staphylococcus aureus subsp. aureus ED98] gi|282313091|gb|EFB43489.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus C101] gi|282316367|gb|EFB46744.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus C427] gi|282318868|gb|EFB49223.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus D139] gi|282321406|gb|EFB51732.1| exonuclease [Staphylococcus aureus subsp. aureus M899] gi|282324528|gb|EFB54840.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus WBG10049] gi|282326782|gb|EFB57079.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330495|gb|EFB60012.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus Btn1260] gi|282590131|gb|EFB95212.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A10102] gi|282595081|gb|EFC00048.1| exonuclease [Staphylococcus aureus subsp. aureus C160] gi|282763048|gb|EFC03180.1| exonuclease [Staphylococcus aureus A8117] gi|283459638|gb|EFC06729.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus H19] gi|283471164|emb|CAQ50375.1| exonuclease [Staphylococcus aureus subsp. aureus ST398] gi|283789695|gb|EFC28517.1| exonuclease [Staphylococcus aureus subsp. aureus A017934/97] gi|285817574|gb|ADC38061.1| DNA polymerase III polC-type [Staphylococcus aureus 04-02981] gi|290919861|gb|EFD96930.1| exonuclease [Staphylococcus aureus subsp. aureus M1015] gi|291094832|gb|EFE25100.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus 58-424] gi|291466417|gb|EFF08941.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus M809] gi|294967849|gb|EFG43879.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A8819] gi|295127458|gb|EFG57097.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886412|gb|EFH25341.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176907|gb|EFH36164.1| exonuclease [Staphylococcus aureus A8796] gi|297577181|gb|EFH95895.1| exonuclease [Staphylococcus aureus subsp. aureus MN8] gi|298695233|gb|ADI98455.1| probable DNA polymerase III alpha chain [Staphylococcus aureus subsp. aureus ED133] gi|300885799|gb|EFK81006.1| exonuclease [Staphylococcus aureus subsp. aureus TCH70] gi|312437640|gb|ADQ76711.1| exonuclease [Staphylococcus aureus subsp. aureus TCH60] gi|312830266|emb|CBX35108.1| exonuclease family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129297|gb|EFT85291.1| hypothetical protein CGSSa03_08545 [Staphylococcus aureus subsp. aureus CGS03] gi|315193423|gb|EFU23820.1| hypothetical protein CGSSa00_04826 [Staphylococcus aureus subsp. aureus CGS00] gi|329724805|gb|EGG61309.1| exonuclease [Staphylococcus aureus subsp. aureus 21172] gi|329731424|gb|EGG67787.1| exonuclease [Staphylococcus aureus subsp. aureus 21193] Length = 184 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 9/177 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI+ + D ET + K I +G V+++D T TF + P S + + Sbjct: 1 MIQDA---FVALDFET--ANGKRTSICSVGMVKVIDSQIT-ETFHTLVNPQD-YFSQQNI 53 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPL 118 K+HGI E +++ P+F +F F + A + I Sbjct: 54 KVHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTY 113 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 S + ++ ++ +G + + + L Y + Sbjct: 114 FCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLT 170 >gi|241666520|ref|YP_002984604.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861977|gb|ACS59642.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 326 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 81/238 (34%), Gaps = 30/238 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 ++ D ETTGL+ ++D IIEIGAV D ++ L R PE +L GI Sbjct: 75 VILDTETTGLNHRSDEIIEIGAVAFTFNDDGAIGDIVGIYGGLQQPSRPIPPEITRLTGI 134 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD ++ + I + E IAHNA FD F A + Sbjct: 135 TDAMVEGQ----LIDIQSLRTLIEPADLIIAHNAGFDRPFCEAFSKIFTGKAW------- 183 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-----------YIKM 174 S++ + + L G H A+ D H L ++ + ++ Sbjct: 184 ACSVSEIDWSARGFEGTKLGYLVGQAGYFHEGHRAVDDCHALLEILDREQHDGESPFTEL 243 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 + F ++ R K + + +E+L++ + Sbjct: 244 YRASQRSRIRVFAEHSPFEMKDHLKARGYRWSDGSDGRLKSWWIEVGEEDLNDELSYL 301 >gi|307717410|gb|ADN88758.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis] gi|307717414|gb|ADN88760.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis] gi|307717416|gb|ADN88761.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis] Length = 231 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 6/194 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + F + + +AHNA FD+GFIN +++ + + + Sbjct: 59 SDPIDVVLQRFKE--WSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLELARFL 116 Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDYHDSLND 174 Query: 193 FKEEKKTVPNISLL 206 + E Sbjct: 175 YMGEGDAYKRARPF 188 >gi|313884171|ref|ZP_07817937.1| exonuclease, DNA polymerase III, epsilon subunit family [Eremococcus coleocola ACS-139-V-Col8] gi|312620618|gb|EFR32041.1| exonuclease, DNA polymerase III, epsilon subunit family [Eremococcus coleocola ACS-139-V-Col8] Length = 849 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 7/105 (6%) Query: 11 VFDIETTG--LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG LD + DRII+I A+ + + T + + + + PN KL GI++E Sbjct: 7 IVDIETTGPNLD-QGDRIIQIAALIIEEGQVT-KEYDMLINPN-MPIPSHISKLTGISNE 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 ++ P S + + + ++AHN FD+ F+ Sbjct: 64 QVQKAPHLSQVIDLWHYRLKD--CIFVAHNINFDLRFLKQCFHHF 106 >gi|108805769|ref|YP_645706.1| hypothetical protein Rxyl_2984 [Rubrobacter xylanophilus DSM 9941] gi|108767012|gb|ABG05894.1| DNA polymerase III, epsilon subunit [Rubrobacter xylanophilus DSM 9941] Length = 560 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 4/97 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG ++ I E+GA++L+ +R F + P GR P +L GITDE Sbjct: 33 YVVFDLETTGSSAREGGITELGALKLVRGRVVDR-FSTLVNP-GRPIEPFVARLTGITDE 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P + F + + + +AHNA FD F Sbjct: 91 MVSGAPPAREVIPRFEE--FAEGSVLVAHNAGFDCSF 125 >gi|163848613|ref|YP_001636657.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus J-10-fl] gi|222526548|ref|YP_002571019.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl] gi|163669902|gb|ABY36268.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus J-10-fl] gi|222450427|gb|ACM54693.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl] Length = 278 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 5/176 (2%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTGL+ + RI E+ + + R + P R+ P+A +++G+ Sbjct: 16 IFFDVETTGLEIQAGHRICEVAMLRWEHGQEVGRI-NTLINPE-RELDPQAAQINGLQPA 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + P F+ I + QNA IAHN FD F+N EL R P + Sbjct: 74 ELNNAPLFTDIAPQVVQ--LSQNAVRIAHNLPFDESFLNMELCRAGYPPFTGPALDTLEL 131 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 R L +L +G+ +L L D ++ M+ I G Sbjct: 132 ARRLGIRRGSLSLAALATTFGLPAPTHRAMDDVLTLRALFDHFVNEMISFGIITLG 187 >gi|291279025|ref|YP_003495860.1| hypothetical protein DEFDS_0623 [Deferribacter desulfuricans SSM1] gi|290753727|dbj|BAI80104.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 247 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 5/164 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + V D ETTGLD + ++I I AV+++++ + VF+ P E++K HGITD Sbjct: 62 KFCVIDTETTGLDFETAKLINIAAVKVVNFKIL-DIYDVFINPE-IPIPEESIKWHGITD 119 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +KDKP+ + I +F F + + + H+ FD+ IN +L+ + I Sbjct: 120 DMVKDKPTVAEILPDFLKFIRD--SVIVGHHVNFDLKMINKDLKLYYGSEIKNIWIDTMF 177 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ++ + + +H AL D+ ++V+ Sbjct: 178 LYSKNILCRDDHISLDF-LLEKFNVKCIGRHTALGDALATAEVF 220 >gi|238753629|ref|ZP_04614991.1| Ribonuclease T [Yersinia ruckeri ATCC 29473] gi|238708181|gb|EEQ00537.1| Ribonuclease T [Yersinia ruckeri ATCC 29473] Length = 217 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAVTLKMDENGWLQRDETLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ +R Sbjct: 80 IDPSNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFVMEAAERACLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D+ ++++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACLTAGIPFDSTQAHSALYDTEQTAELFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|56478059|ref|YP_159648.1| excinuclease Cho [Aromatoleum aromaticum EbN1] gi|56314102|emb|CAI08747.1| Excinuclease Cho, similar to DNA polymerase III epsilon subunit family [Aromatoleum aromaticum EbN1] Length = 478 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 8/163 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 DIETTG + +D I EI +E+ + R + + P+ R ++ GI++ + Sbjct: 20 FVDIETTGTTASHDSITEIAIIEIGEDGV--REWSSLVRPDSR-IPDYIERMTGISNHMV 76 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D P+F+ + +D +E ++AHNA+FD GFI A +R+ D Sbjct: 77 ADAPTFAELAETVFDRLHE--RVFVAHNARFDHGFIRAAFRRLGVDFRPKVLCT-VRLSR 133 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R R++L++L R+G+ ++H AL D+ L + + Sbjct: 134 RLYPQERRHNLDALIARHGLE--VEAQHRALGDAQALWQFWQR 174 >gi|222152446|ref|YP_002561621.1| DNA polymerase III PolC [Streptococcus uberis 0140J] gi|222113257|emb|CAR40776.1| DNA polymerase III PolC-type [Streptococcus uberis 0140J] Length = 1465 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMYKGNII-EQFDEFIDP-GHPLSAFTTELTGITDN 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + EF F ++ +AHNA FD+GF+NA +R + I Sbjct: 485 HLIGAKPLLQVLEEFQAFCHD--TVLVAHNASFDIGFMNANYERNGLPQITQPVIDTLEF 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLEH--HHMANYDAEATGRLLFIFLKEARE 592 >gi|213962149|ref|ZP_03390413.1| exonuclease [Capnocytophaga sputigena Capno] gi|213955155|gb|EEB66473.1| exonuclease [Capnocytophaga sputigena Capno] Length = 258 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 75/222 (33%), Gaps = 19/222 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG+D DRI+EI +++ + +K ++T+ + P A +HGITDE Sbjct: 11 FFDLETTGIDITKDRIVEISILKVYPNGNKESKTW--LVNP-TIPIPKAASDVHGITDER 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + +P+F + + + + + + L+ L +D +I Sbjct: 68 VACEPTFKELAKQIHNMIKDSDLAGYNSDRFDIPLLAEEMLRAEVDFDLGNRVSVDVQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + S ++ H A D++ ++ + + K Sbjct: 128 FHK----MEQRTLSAAYKFYCGKDLIDAHTASADTNATYEILKAQLDRYDSLENNIKKLS 183 Query: 190 D-----------RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + F K + K I EE Sbjct: 184 EFTYRKQIADFAGFIGYNDKGEEIFTFGKHKGKRVEDIFDEE 225 >gi|116627026|ref|YP_819645.1| DNA polymerase III PolC [Streptococcus thermophilus LMD-9] gi|122268369|sp|Q03MX3|DPO3_STRTD RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116100303|gb|ABJ65449.1| DNA polymerase III catalytic subunit, PolC type [Streptococcus thermophilus LMD-9] gi|312277486|gb|ADQ62143.1| DNA polymerase III polC-type [Streptococcus thermophilus ND03] Length = 1464 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + F F+ P G S +L GITD Sbjct: 426 YVVFDVETTGLSAVHNDLIQIAASKMHKGNIV-EQFDEFIDP-GYPLSAFTTELTGITDN 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + EF +F A +AHNA FDVGF+NA +R + I Sbjct: 484 HVKGAKPLVQVLQEFQEFCKG--AVLVAHNATFDVGFMNANYERHQLPTISQPVIDTLEF 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R+ L L KR+G+ + H H A D+ + + + G Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALDH--HHMANYDAEATGRLLFIFIKDVFE-KHGLTNL 598 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 E + S +K Sbjct: 599 EQLNTELVSDDSYKKSRVKHATLYV 623 >gi|320531410|ref|ZP_08032377.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136382|gb|EFW28363.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 299 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 65/205 (31%), Gaps = 4/205 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + EIGAV++ F + P G + L GIT+ Sbjct: 22 FVVVDLETTGGAPGARSLTEIGAVKVRGGQVLAD-FSTLVNP-GVAIPAQITMLTGITNA 79 Query: 69 FLKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + P W + +AHNA+FDVG + + + +P + Sbjct: 80 MVAGAPGVSTCVEAFLSWADLLADDVVLVAHNARFDVGHLRGAAAALGLEWPEPRVLDTL 139 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + S + + R H AL D+ DV + + + Sbjct: 140 ALARKAWTRSEVPNHKLGTLAAFVGSRTRPSHRALDDARATVDVLHAALEVMAPLGVTHL 199 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211 + S L P Sbjct: 200 EDLATASDPVPAKRRAKSRLADALP 224 >gi|307253947|ref|ZP_07535799.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256208|ref|ZP_07537995.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258402|ref|ZP_07540143.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306863151|gb|EFM95093.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865389|gb|EFM97285.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867586|gb|EFM99433.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 218 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 14/197 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET GL+++ D ++E+ A+ + + ++ + P G +P++LK +G Sbjct: 21 VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + P + Q A +AHNA FD F+ A ++RIN Sbjct: 81 IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQAFVQAAVKRINAK 140 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I + H AL D+ ++++ M+ Sbjct: 141 RDPFHPFAMFDTATLAGFMFGQTVLVKACQMAKIPFDGKQAHSALYDTEKTTELFCAMVN 200 Query: 177 GGSQI-NFGFKTNEDRF 192 + F ++ + Sbjct: 201 RLKDLGGFPLVSDSESN 217 >gi|111224492|ref|YP_715286.1| hypothetical protein FRAAL5108 [Frankia alni ACN14a] gi|111152024|emb|CAJ63748.1| putative DNA-directed DNA polymerase [Frankia alni ACN14a] Length = 580 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 73/195 (37%), Gaps = 8/195 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + I EIGAV + + P P + GITD Sbjct: 21 FVVVDLETTGTSAATSEITEIGAVRVRGGEVLAEM-STLVRP-SAGIPPMVSVITGITDA 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR----II 124 + P+ + + F + + A +AHNA FD+GF+ A QR P I Sbjct: 79 MVATAPAEAEVVPTFLE--FARGAVLVAHNAPFDLGFLRAAAQRCGYPPPAWEHLDTLRI 136 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 ++R + P R + R HR+ A +L ++ ++ G + Sbjct: 137 ARRLVSRDEAPDCRLASLARLFRSSTEPCHRALADARATVDVLHGLFERLGNAGVRTLEE 196 Query: 185 FKTNEDRFFKEEKKT 199 R +++ Sbjct: 197 LHEYSARVSPAQRRK 211 >gi|325068629|ref|ZP_08127302.1| hypothetical protein AoriK_12441 [Actinomyces oris K20] Length = 204 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 4/176 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + EIGAV++ F + P G + L GIT+ Sbjct: 22 FVVVDLETTGGAPGARSLTEIGAVKVRGGQVLAE-FSTLVNP-GVAIPAQITLLTGITNA 79 Query: 69 FLKDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + P + F D+ + +AHNA+FDVG + ++ + +P + Sbjct: 80 MVAGAPGVRTCVEAFLDWADLLADDVVLVAHNARFDVGHLRGAAAALDLEWPEPRVLDTL 139 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + S + + R H AL D+ DV + + + Sbjct: 140 ALARKAWTRSEVPNHKLGTLAAFVGSQIRPTHRALDDARATVDVLHAALEVMAPLG 195 >gi|219847899|ref|YP_002462332.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM 9485] gi|219542158|gb|ACL23896.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM 9485] Length = 280 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 5/175 (2%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGLD RI E+ + T + + P R+ P+A +++GI E Sbjct: 16 VFFDVETTGLDLQNGHRICELAMLRREHRQITGQI-NTLINPE-RELDPQASQVNGIRAE 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + + Q A +AHN FD F+N EL R PL + Sbjct: 74 DLQSAPRFAELTVQVVQ--LSQQAVRVAHNLPFDESFLNMELARAGYPPLTGPALDTLEL 131 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 R L +L +G+ +L H L D + + Sbjct: 132 ARRLGIRRGSLSLGALATSFGLPTPTHRAMDDVLTLHALFDRLVAKLADYGVTTL 186 >gi|55820164|ref|YP_138606.1| DNA polymerase III PolC [Streptococcus thermophilus LMG 18311] gi|81561132|sp|Q5M6H0|DPO3_STRT2 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|55736149|gb|AAV59791.1| DNA polymerase III alpha subunit [Streptococcus thermophilus LMG 18311] Length = 1464 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + F F+ P G S +L GITD Sbjct: 426 YVVFDVETTGLSAVHNDLIQIAASKMHKGNIV-EQFDEFIDP-GYPLSAFTTELTGITDN 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + EF +F A +AHNA FDVGF+NA +R + I Sbjct: 484 HVKGAKPLVQVLQEFQEFCKG--AVLVAHNATFDVGFMNANYERHQLPTISQPVIDTLEF 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R+ L L KR+G+ + H H A D+ + + + G Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALDH--HHMANYDAEATGRLLFIFIKDVFE-KHGLTNL 598 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 E + S +K Sbjct: 599 EQLNTELVSDDSYKKSRVKHATLYV 623 >gi|55822053|ref|YP_140494.1| DNA polymerase III PolC [Streptococcus thermophilus CNRZ1066] gi|81559957|sp|Q5M1Y0|DPO3_STRT1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|55738038|gb|AAV61679.1| DNA polymerase III alpha subunit [Streptococcus thermophilus CNRZ1066] Length = 1464 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + F F+ P G S +L GITD Sbjct: 426 YVVFDVETTGLSAVHNDLIQIAASKMHKGNIV-EQFDEFIDP-GYPLSAFTTELTGITDN 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + EF +F A +AHNA FDVGF+NA +R + I Sbjct: 484 HVKGAKPLVQVLQEFQEFCKG--AVLVAHNATFDVGFMNANYERHQLPTISQPVIDTLEF 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R+ L L KR+G+ + H H A D+ + + + G Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALDH--HHMANYDAEATGRLLFIFIKDVFE-KHGLTNL 598 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 E + S +K Sbjct: 599 EQLNTELVSDDSYKKSRVKHATLYV 623 >gi|293390535|ref|ZP_06634869.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951069|gb|EFE01188.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D7S-1] Length = 217 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET GL++K D ++E+ A+ L ++ + P G PE+LK +G Sbjct: 23 VVIDVETAGLNAKTDALLELAAITLKMDENGNLLPDQKCHFHIQPFEGANIDPESLKFNG 82 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + Q + +AHNA FD GF+ A QR+N Sbjct: 83 IDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNAAFDQGFLMAAAQRMNAK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I + H AL D+ ++++ M+ Sbjct: 143 RNPFHPFSTFDTATLSGFMFGQTVLVKACQAAKIPFDSQQAHSALYDTERTAELFCYMVN 202 Query: 177 GGSQIN 182 Q+ Sbjct: 203 HLKQLG 208 >gi|288921215|ref|ZP_06415500.1| stress protein [Frankia sp. EUN1f] gi|288347369|gb|EFC81661.1| stress protein [Frankia sp. EUN1f] Length = 622 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 7/171 (4%) Query: 15 ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP 74 ET+GL + DRI+ I V++ + L P P + +HG+T E L P Sbjct: 2 ETSGLAADRDRILSIAVVQVGADGAVGERWTTLLDPG---CDPGPVHIHGLTRELLAGSP 58 Query: 75 SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH 134 +F+ + E +AHNA FD F+ AE R ++ R+ + R Sbjct: 59 TFADVVDELASRLAG--RVMVAHNASFDWRFLTAEAVRAGRELPTERRMCSCVLARRLDL 116 Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 P L ++ + + +H AL D+ ++++V +M+ + + Sbjct: 117 PVPDFRLATIADFW--AVPFERQHDALADAMVVAEVLPRMLALAGEQDLEL 165 >gi|163791070|ref|ZP_02185490.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Carnobacterium sp. AT7] gi|159873626|gb|EDP67710.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Carnobacterium sp. AT7] Length = 939 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 7/176 (3%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V DIETTG + + DR+I+ G V L +R F + P + L G+++ Sbjct: 7 YAVVDIETTGGNVASGDRMIQFGCVLLEGDQVVHR-FATNINP-LTSIPKQIEHLTGLSN 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P F I + ++ + IAHN +FD F++AELQR L I Sbjct: 65 KTVAQAPYFEDIAATIYNLLDG--CIIIAHNIQFDYTFLSAELQRCGMPALQNKGIDTVE 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 S LN L ++ I + H A D+ + +++++ + ++ Sbjct: 123 LAQVLLPTESSYRLNDLVSKFNIEH--TNPHQADSDAAVTAELFLVLKQKLKELPL 176 >gi|254443961|ref|ZP_05057437.1| exonuclease, DNA polymerase III, epsilon subunit family [Verrucomicrobiae bacterium DG1235] gi|198258269|gb|EDY82577.1| exonuclease, DNA polymerase III, epsilon subunit family [Verrucomicrobiae bacterium DG1235] Length = 220 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 74/200 (37%), Gaps = 6/200 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL K + I +I V L +F ++ P G+ KL + DE Sbjct: 8 VAFDLETTGLRYKQEEITQIAGVRLGGVIMNVEDSFCTYVNP-GKPIPENIQKLTRVRDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +KD P F D+ + + F+ A + + + +D Sbjct: 67 DVKDAPKPLEALQAFSDWVGDATLFGHDIYRFDFNFIRKYARQEGVETRTVRFIDTMDIF 126 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + RN L+ + +R +S +H A D+ LL+ +Y + Sbjct: 127 EVMWPDFSRLRNSLDDIAERLSAGLSSMRRHDAQSDAILLAHIYQ---RIQDHPDLEKLC 183 Query: 188 NEDRFFKEEKKTVPNISLLK 207 +EE T+P + K Sbjct: 184 TRVPVHEEEIPTLPVKNRKK 203 >gi|220920098|ref|YP_002495399.1| DNA polymerase III subunit epsilon [Methylobacterium nodulans ORS 2060] gi|219944704|gb|ACL55096.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] Length = 223 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 8/170 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGLD + D I+ + A+ + D T+ +F+ + R +SPEA+K+H + + Sbjct: 32 VALDCETTGLDPRRDEIVAVAAIRIRGDRILTSESFRATVQSQ-RPSSPEAIKVHRLLEA 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI---ID 125 ++ + E F + + FDVG ++ +RI + L RI Sbjct: 91 EIRQGMPHDVMLPELLRFIGS--RPVVGYYTDFDVGMVDKYARRILRIRLPNPRIDVSAL 148 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDSHLLSDVYIKM 174 + R P S + +H A D+ + + +Y+++ Sbjct: 149 YYACKYRDAPDYVKIDLSFARIAADLGLPALPQHDAFNDALMTAMMYVQL 198 >gi|83311172|ref|YP_421436.1| DNA polymerase III subunit epsilon [Magnetospirillum magneticum AMB-1] gi|82946013|dbj|BAE50877.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] Length = 306 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 63/229 (27%), Gaps = 11/229 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCPNGRKNSPEALKLHG 64 I D+ETTGLD D IIE+ V + + FQ P E KL G Sbjct: 53 IFIDLETTGLDPAKDEIIELAMVPFVYGLDGRIFEIQDAFQGLRQP-SNPIPAEITKLTG 111 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITDE + K + + F A A + KF F + + + Sbjct: 112 ITDEMVAGKVIDPAEVAAFAAPAAIVIAHNAAFDRKFIERFCPSFSTKPWGCSMSQVDWT 171 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG-ALLDSHLLSDVYIKMMVGGSQINF 183 + H + A K++ + Sbjct: 172 GEGFEGTKLGYLLGGFGLFHDGHRATDDCHAAIEILARPLPKSGVPAMGKLLEKAREATC 231 Query: 184 GFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 F ++ R + F + +++L + + Sbjct: 232 RVWAENSPFDLKDVLKARGYRWSDGSDGRPRAWFIDVPEDQLQQEKDFL 280 >gi|57652115|ref|YP_186779.1| exonuclease [Staphylococcus aureus subsp. aureus COL] gi|87160447|ref|YP_494527.1| exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195792|ref|YP_500602.1| hypothetical protein SAOUHSC_02110 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222044|ref|YP_001332866.1| exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|161510116|ref|YP_001575775.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141184|ref|ZP_03565677.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258451040|ref|ZP_05699076.1| exonuclease [Staphylococcus aureus A5948] gi|262049938|ref|ZP_06022798.1| hypothetical protein SAD30_1408 [Staphylococcus aureus D30] gi|262053185|ref|ZP_06025343.1| hypothetical protein SA930_1190 [Staphylococcus aureus 930918-3] gi|282923233|ref|ZP_06330914.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9765] gi|284024940|ref|ZP_06379338.1| exonuclease [Staphylococcus aureus subsp. aureus 132] gi|294849443|ref|ZP_06790185.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9754] gi|304379080|ref|ZP_07361827.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57286301|gb|AAW38395.1| exonuclease [Staphylococcus aureus subsp. aureus COL] gi|87126421|gb|ABD20935.1| exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203350|gb|ABD31160.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374844|dbj|BAF68104.1| exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|160368925|gb|ABX29896.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257861282|gb|EEV84094.1| exonuclease [Staphylococcus aureus A5948] gi|259158912|gb|EEW43998.1| hypothetical protein SA930_1190 [Staphylococcus aureus 930918-3] gi|259161946|gb|EEW46528.1| hypothetical protein SAD30_1408 [Staphylococcus aureus D30] gi|282593144|gb|EFB98143.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9765] gi|294823580|gb|EFG40007.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9754] gi|302751766|gb|ADL65943.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342315|gb|EFM08207.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196235|gb|EFU26590.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus CGS01] gi|320139726|gb|EFW31595.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA131] gi|320142357|gb|EFW34171.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA177] gi|329314570|gb|AEB88983.1| Exonuclease [Staphylococcus aureus subsp. aureus T0131] gi|329728665|gb|EGG65095.1| exonuclease [Staphylococcus aureus subsp. aureus 21189] Length = 184 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 9/177 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI+ + D ET + K I +G V+++D T TF + P S + + Sbjct: 1 MIQDA---FVALDFET--ANGKRTSICSVGMVKVIDSQIT-ETFHTLVNPQD-YFSQQNI 53 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPL 118 K+HGI E +++ P+F +F F + A + I Sbjct: 54 KIHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTY 113 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 S + ++ ++ +G + + + L Y + Sbjct: 114 FCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLT 170 >gi|146302714|ref|YP_001197305.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium johnsoniae UW101] gi|146157132|gb|ABQ07986.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium johnsoniae UW101] Length = 256 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 72/181 (39%), Gaps = 8/181 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG+D DRI+EI ++ + +K ++T+ + P P+ +HGITDE Sbjct: 11 FFDLETTGIDIGKDRIVEISIFKVFPNGNKESKTW--LVNP-TIPIPPQTTAVHGITDEK 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P+F+ + + + + + L+ + +D +I Sbjct: 68 VANEPTFAELAPLVHNMIKDSDLAGFNSDRFDIPLLAEELLRAGVDFDMKNKVSVDVQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + S ++ S + H A D+ ++ + ++ K+ Sbjct: 128 FHK----MEERTLSAALKFYCGKSLDNAHSAEADTMATYEILKAQLDRYPELENDMKSLS 183 Query: 190 D 190 + Sbjct: 184 E 184 >gi|327194132|gb|EGE61003.1| putative polymerase protein, epsilon subunit [Rhizobium etli CNPAF512] Length = 326 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 64/187 (34%), Gaps = 15/187 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ ++D IIEIGAV D ++ L R PE +L GI Sbjct: 75 VVLDTETTGLNHRSDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIPPEVTRLTGI 134 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD ++ + I E IAHNA FD F A Sbjct: 135 TDAMVEGQ----VIDIRSLSALIEPADLIIAHNAGFDRPFCEAFSSLFTGKAW------- 183 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 S+A + + L G H A+ D H L ++ + G Sbjct: 184 ACSVAEIDWSARGFEGTKLGYLVGQAGYFHEGHRAVDDCHALLEILDRQQGEGESPFAEL 243 Query: 186 KTNEDRF 192 R Sbjct: 244 YRASQRS 250 >gi|302333559|gb|ADL23752.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JKD6159] Length = 184 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 60/189 (31%), Gaps = 9/189 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI+ + D ET + K I +G V+++D T TF + P S + + Sbjct: 1 MIQDA---FVALDFET--ANGKRTSICSVGMVKVIDSQIT-ETFHTLVNPQD-YFSQQNI 53 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPL 118 K+HGI E +++ P+F +F F + A + I Sbjct: 54 KVHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTY 113 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 S + ++ ++ +G + + + L Y + Sbjct: 114 FCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTHVT 173 Query: 179 SQINFGFKT 187 + K Sbjct: 174 NIYGKNLKD 182 >gi|224541223|ref|ZP_03681762.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM 15897] gi|224525868|gb|EEF94973.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM 15897] Length = 212 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 60/179 (33%), Gaps = 11/179 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV DIE TGL+ + +R+IE+ A++ +++ + R F + P + + L Sbjct: 15 YIVVDIEATGLNPETERLIEVAAIKYINHKEVAR-FSELINPLRDQLPVDLLDKDKTIYI 73 Query: 69 FLKDKPSFSSIFSEFW----------DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + ++ + I + + + L Sbjct: 74 SDFIENLTGISNRMLHDARGEKDVLREYIKFIGNDVIIGHNVRFDIRFIYDALLRDYGVL 133 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + IDTL IAR+ I + H A+ D + DVY MM Sbjct: 134 FQNDYIDTLKIARKLLHEDLKRYRLKDLADHYHIDYSHAHRAVNDCEITHDVYEMMMED 192 >gi|89891036|ref|ZP_01202544.1| putative DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7] gi|89516680|gb|EAS19339.1| putative DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7] Length = 255 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 74/231 (32%), Gaps = 18/231 (7%) Query: 2 IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ N R I FD+ETTG++ DRI+EI ++L T +T+ + P Sbjct: 1 MQLNLRRPICFFDLETTGVNISKDRIVEIAIHKVLPDG-TEKTYTYRVNP-TVPIPAATT 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGITD+ +KD+P+F + E + + + N + + + +D Sbjct: 59 AVHGITDDMVKDEPTFKELAHEIHNIIKDSDLAGFNSNRFDI----PLLAEEMLRAGVDF 114 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + ++ + H A D+ +V + Sbjct: 115 EMGNRNAIDVQNIFHKMEQRTLVAAYKFYCDKDLTNAHSAEADTIATYEVLKGQLDRYPD 174 Query: 181 INFGFKTNED-----------RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + + + + K + ++E Sbjct: 175 LENDMNALAEFSTRRKPVDFAGMLAFNDQGEECFNFGKHKGKKVVDVLEKE 225 >gi|311695934|gb|ADP98807.1| DNA polymerase III, epsilon subunit [marine bacterium HP15] Length = 486 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 5/158 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 DIETTG +S DRI EIG +Q L P R SP GI++E Sbjct: 13 FAFLDIETTGGNSARDRITEIGIRFWRAGEVVGE-WQTLLNPETR-ISPFIENFTGISNE 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P F + E ++AHNA+FD GFI +E +R+ + LS Sbjct: 71 MVADAPLFEEVADELEAQLKG--KVFVAHNARFDYGFIKSEFRRLGRLFSAKVLCTVKLS 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 R R+++++L R+G+ R + + + L Sbjct: 129 -RRLYPEFRRHNMDALIARHGLARVQRHRAMGDVSAML 165 >gi|307717332|gb|ADN88719.1| DNA polymerase III [Listeria seeligeri] Length = 231 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 6/194 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + F + + +AHNA FD+GFIN +++ + + + Sbjct: 59 SDPIDVVLKRFKE--WSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLELARFL 116 Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDYHDSLND 174 Query: 193 FKEEKKTVPNISLL 206 + E Sbjct: 175 YMGEGDAYKRARPF 188 >gi|311899062|dbj|BAJ31470.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae KM-6054] Length = 329 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 8/172 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL ++DR+I G +L + + + P P + +HG+T E Sbjct: 25 FAVVDVETTGLG-RSDRVISAGVYQLDPDGEITDHWYTLVNPQR---DPGPVWIHGLTSE 80 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P+F + +EF + + +AHNA FD I+ E R R+ + Sbjct: 81 VLAGAPTFPEVAAEFAERLRD--RVLVAHNALFDWNMISREFSRAGLRAPVEQRLCTMVL 138 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + P L+SL + + R H AL D+ +L++V+ + Sbjct: 139 ARDLRLPLPNGKLSSLAAHF--DVRQRQAHHALDDARVLAEVFRPSLELARS 188 >gi|309807500|ref|ZP_07701459.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 01V1-a] gi|308169250|gb|EFO71309.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 01V1-a] Length = 234 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 5/173 (2%) Query: 6 KMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M V D+ETTG ++DRII+ G + D T +T+ + P + L G Sbjct: 1 MMFFAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+++ +FS + + N ++ + Sbjct: 59 ISNQEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTV 118 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175 + IA PS + + HR+ AL+ + +L + I+M+ Sbjct: 119 ELAQIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIDKIEML 171 >gi|269941365|emb|CBI49762.1| putative exonuclease [Staphylococcus aureus subsp. aureus TW20] Length = 184 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 9/177 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI+ + D ET + K I +G V+++D T +TF + P S + + Sbjct: 1 MIQDA---FVALDFET--ANGKRTSICSVGMVKVIDSQIT-KTFHTLVNPQD-YFSQQNI 53 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPL 118 K+HGI E +++ P+F +F F + A + I Sbjct: 54 KIHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTY 113 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 S + ++ ++ +G + + + L Y + Sbjct: 114 FCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLT 170 >gi|332521177|ref|ZP_08397635.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola 5H-3-7-4] gi|332043270|gb|EGI79467.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola 5H-3-7-4] Length = 257 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 69/172 (40%), Gaps = 8/172 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG++ DR++EI +++ + +K ++T+ + P E +HGITDE Sbjct: 11 FFDLETTGINISKDRVVEISILKVFPNGNKESKTW--LVNPE-MPIPAEVSAIHGITDER 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P+F+ + E + + N L+ ++ ID +I Sbjct: 68 VANEPTFAELAKEINVMIKDSDLAGFNSNRFDIPLLAEEMLRANMDFDMNKRVAIDVQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + S ++ + + H A D+ +V + + Sbjct: 128 FHK----MEQRTLSAAYKFYCDKNLENAHSAEADTLATYEVLKAQLDRYEDL 175 >gi|315127223|ref|YP_004069226.1| ribonuclease T [Pseudoalteromonas sp. SM9913] gi|315015737|gb|ADT69075.1| ribonuclease T [Pseudoalteromonas sp. SM9913] Length = 224 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 82/206 (39%), Gaps = 13/206 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++EI A +++ D + T + P G A++ +G Sbjct: 19 VVIDVETAGFNKETDALLEIAASVLKMDDEGLLSIDHTVHFHVQPFEGANIEQAAIEFNG 78 Query: 65 ITDE--------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q + +AHNA FD GF+NA ++R N Sbjct: 79 IEPFSALRGAVPEEEAIKEICKVVRKAQKAAGCQRSVVVAHNAAFDHGFLNAAIERNNIK 138 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + + L C+ GI ++ H AL D+ +++Y ++ Sbjct: 139 RTPFHPFVSFDTTSLAGLALGQTVLAKACRAAGIEFDNKQAHSALYDTERTAELYCLIVN 198 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 Q+ ++ E++ + + Sbjct: 199 RWQQLGGWPLAIDETQQNEDEVSNQD 224 >gi|291301852|ref|YP_003513130.1| DNA polymerase III subunit epsilon [Stackebrandtia nassauensis DSM 44728] gi|290571072|gb|ADD44037.1| DNA polymerase III, epsilon subunit [Stackebrandtia nassauensis DSM 44728] Length = 578 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 4/167 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG+ S I EIGAV++ + + P G L GITD + Sbjct: 28 VVDLETTGVASDACSITEIGAVKVRGGEVLGE-YATLVNP-GEAIDARISALTGITDAMV 85 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D P+ + F + + A W+AHNA FDVGF+ + + P + + Sbjct: 86 ADAPAIEEVLPSFLE--FARGAVWVAHNAPFDVGFLRSACAQAELPWPRPQVVDTVVLAR 143 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R S + + H AL D+ DV ++ Sbjct: 144 RLVDRSEVPNKRLSTLARYFGARVKPSHRALDDARATVDVLHALLER 190 >gi|349620|gb|AAA17435.1| DNA polymerase III epsilon subunit [Buchnera aphidicola] Length = 179 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 80/180 (44%), Positives = 106/180 (58%), Gaps = 11/180 (6%) Query: 4 KNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 N R IV D ETTG++S RIIEIGA+E+++ T + F ++ PN R + Sbjct: 2 NNTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN-RLIESD 60 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INK 115 A K+HGITD+FL DKPSF I +F+++ I HNA FDVGFIN E + Sbjct: 61 ASKIHGITDDFLSDKPSFKDIAKDFFNYIKNSE--LIIHNASFDVGFINQEFSMLTKKIQ 118 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + IIDTL IAR+ P +N L++LC RY I SHR HGA+LD+ LL +Y+ M Sbjct: 119 DISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGKLYLLMT 178 >gi|156934185|ref|YP_001438101.1| ribonuclease T [Cronobacter sakazakii ATCC BAA-894] gi|166228564|sp|A7MFC6|RNT_ENTS8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|156532439|gb|ABU77265.1| hypothetical protein ESA_02012 [Cronobacter sakazakii ATCC BAA-894] Length = 223 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL---DYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L D T + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAVTLKMDADGWLTPDETLHFHVEPFEGAILQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + N A +AHNA FD F+ A +R + Sbjct: 80 IDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCNRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L C G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLAKACIAAGMPFDSTQAHSALYDTEQTALLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|330995701|ref|ZP_08319599.1| exonuclease [Paraprevotella xylaniphila YIT 11841] gi|329574760|gb|EGG56321.1| exonuclease [Paraprevotella xylaniphila YIT 11841] Length = 256 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 70/172 (40%), Gaps = 8/172 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG++ NDRI+E+ +++ + ++ +++ + + P + +HGI DE Sbjct: 10 VFFDLETTGINITNDRIVELCYIKVYPNGNEESKS--MRINPEMH-IPESSSAIHGIYDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + + + + N + L+ + + ID + Sbjct: 67 DVADCPTFKQVAKDLANTIKGCDFAGFNSNRFDVPMLVEEFLRAGIDIDIRKRKFIDVQN 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I + S ++ + H AL D+ +V + + + Sbjct: 127 IYHK----LERRTLSAAYKFYCGKDLENAHSALADTRATYEVLMAQLDHYPE 174 >gi|239616933|ref|YP_002940255.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1] gi|239505764|gb|ACR79251.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1] Length = 180 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 65/170 (38%), Gaps = 9/170 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64 M +V D ETTG K +IEI V + D+ +F + P R + G Sbjct: 1 MEFVVIDTETTGSSPHKGAELIEIAGVVVRDWEIIYEESFNELIKPK-RHVPISITMITG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I + L+DK + F+DF + + NA FD+ F++ ++I L + Sbjct: 60 INNLMLEDKLPIEIVLPRFYDFVRD--RVLVIQNAPFDLSFLDYFGKKIGIGELPNPFVD 117 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D+ + I +H AL D+ + +IKM Sbjct: 118 TISLSRSLFRGRHNLDII----LARLGIFCEDRHRALGDAVATAKAFIKM 163 >gi|257464923|ref|ZP_05629294.1| ribonuclease T [Actinobacillus minor 202] gi|257450583|gb|EEV24626.1| ribonuclease T [Actinobacillus minor 202] Length = 216 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET GL+++ D ++EI A+ + + ++ + P G + ++LK +G Sbjct: 21 VIIDVETAGLNAQTDALLEIAAITVKMDENGYLVPDQKCHYHIQPFEGANINQDSLKFNG 80 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + P + + Q A +AHNA FD GF+ A +RIN Sbjct: 81 IDIDNPLRGAVPENIAIPEMFKMVRKAMKDQGCQRAVIVAHNAAFDQGFLQAAAKRINAK 140 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I + H AL D+ ++++ M+ Sbjct: 141 RDPFHPFAMFDTATLAGFMYGQTVLVKACQMANIAFDGKQAHSALYDTEKTTELFCTMVN 200 Query: 177 GGSQIN 182 + Sbjct: 201 RLKDLG 206 >gi|302875356|ref|YP_003843989.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans 743B] gi|307688937|ref|ZP_07631383.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans 743B] gi|302578213|gb|ADL52225.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans 743B] Length = 867 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 4/168 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IVFD+E+TG D D II+I A+ + + +F+ FL P K S + + Sbjct: 500 NIIVFDVESTGTDVTEDEIIQIAAIRINRNGEVIDSFERFLKP---KKSVKNSEHIHGFS 556 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + +NA + HN ++D+ +++E+ R+N DTL Sbjct: 557 DEFLKEKGEDKETVIKEFLRFSENAVIVGHNVQYDINILSSEIHRLNLGKSKFLAFYDTL 616 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I RR +P+ N + + H A+ D D+ I+ + Sbjct: 617 DIYRRFYPNLVNHKLNTLSDI-FKTENIPSHDAMDDILATKDLLIRAL 663 >gi|167762354|ref|ZP_02434481.1| hypothetical protein BACSTE_00708 [Bacteroides stercoris ATCC 43183] gi|167699997|gb|EDS16576.1| hypothetical protein BACSTE_00708 [Bacteroides stercoris ATCC 43183] Length = 256 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 68/191 (35%), Gaps = 8/191 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + +DRI+EI +++ + ++ +T + + P EA +HGI DE Sbjct: 10 VFFDLETTGTNINSDRIVEICYLKVYPNGNEETKT--MRINPEMH-IPEEASAVHGIYDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P+F + + + N L+ + + +D Sbjct: 67 DVAECPTFKEVARNIANDIEGCDLAGFNSNRFDIPVLAEEFLRADVDIDMSRRKFVDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + S ++ + H A D+ +V + + ++ Sbjct: 127 IFHK----MEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLMSQLDRYPELQNDVAFL 182 Query: 189 EDRFFKEEKKT 199 D + Sbjct: 183 SDYSSFNKNVD 193 >gi|332876762|ref|ZP_08444520.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685321|gb|EGJ58160.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 256 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 69/172 (40%), Gaps = 8/172 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG++ DRI+E+ +++ + ++ +++ + + P + +HGI DE Sbjct: 10 VFFDLETTGINITTDRIVELCYIKVYPNGNEESKS--MRINPEMH-IPESSSAIHGIYDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + E + + N + L+ + + ID + Sbjct: 67 DVADCPTFKQVARELANTIKGCDFAGFNSNRFDVPMLVEEFLRAGIDIDIRKRKFIDVQN 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I + S ++ + H AL D+ +V + + + Sbjct: 127 IYHK----LERRTLSAAYKFYCGKDLENAHSALADTRATYEVLMAQLDHYPE 174 >gi|150025497|ref|YP_001296323.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] gi|149772038|emb|CAL43514.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] Length = 256 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 83/214 (38%), Gaps = 9/214 (4%) Query: 2 IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 + R I FD+ETTG+D DRI+EI ++ + +K ++T+ + P + Sbjct: 1 MELKLTRPICFFDLETTGIDIGKDRIVEISVFKIFPNGNKESKTW--LVNP-TIPIPAQT 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGITDE + ++P+F+ + S+ ++ + + + L+ + Sbjct: 58 TAVHGITDEKVANEPTFNELASQVYNMIKDSDLAGFNSDRFDIPLLAEELLRAGVDFDMK 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +D ++ + S ++ S + H A D+ ++ + Sbjct: 118 GRVSVDVQTVFHK----MEERTLSAALKFYTGKSLENAHSAEADTMATYEILKAQLDRYP 173 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 ++ K+ + +++ + +D Sbjct: 174 ELENDMKSLSEFTTRKKIADFAGMIAFDKDNEEV 207 >gi|307717326|gb|ADN88716.1| DNA polymerase III [Listeria monocytogenes] gi|307717328|gb|ADN88717.1| DNA polymerase III [Listeria monocytogenes] gi|307717342|gb|ADN88724.1| DNA polymerase III [Listeria marthii] gi|307717348|gb|ADN88727.1| DNA polymerase III [Listeria monocytogenes] gi|307717364|gb|ADN88735.1| DNA polymerase III [Listeria monocytogenes] gi|307717370|gb|ADN88738.1| DNA polymerase III [Listeria marthii] gi|307717372|gb|ADN88739.1| DNA polymerase III [Listeria marthii] gi|307717376|gb|ADN88741.1| DNA polymerase III [Listeria monocytogenes] gi|307717382|gb|ADN88744.1| DNA polymerase III [Listeria monocytogenes] gi|307717384|gb|ADN88745.1| DNA polymerase III [Listeria monocytogenes] gi|307717398|gb|ADN88752.1| DNA polymerase III [Listeria monocytogenes] gi|307717404|gb|ADN88755.1| DNA polymerase III [Listeria monocytogenes] Length = 231 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 6/194 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + F + + +AHNA FD+GFIN +++ + + + + Sbjct: 59 SDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELARFL 116 Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDFHDSLND 174 Query: 193 FKEEKKTVPNISLL 206 + E Sbjct: 175 YMGEGDAYKRARPF 188 >gi|198274686|ref|ZP_03207218.1| hypothetical protein BACPLE_00842 [Bacteroides plebeius DSM 17135] gi|198272133|gb|EDY96402.1| hypothetical protein BACPLE_00842 [Bacteroides plebeius DSM 17135] Length = 258 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 69/200 (34%), Gaps = 12/200 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + DRI+EI +++ + ++ +T + + P + +HGI DE Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTLR--INPEMH-IPETSTAIHGIHDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + + + N + L+ L + +D Sbjct: 67 DVADCPTFKEVAKDIARDIEGADIAGFNSNRFDVPVLVEEFLRAGIDIDLTKRKFVDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + S ++ + H A D+ +V + N Sbjct: 127 IYHK----LEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLKAQLDHYP----DVLQN 178 Query: 189 EDRFFKEEKKTVPNISLLKR 208 + + E N+ R Sbjct: 179 DINYLSEYSSYSKNVDFAGR 198 >gi|118473161|ref|YP_890494.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str. MC2 155] gi|118174448|gb|ABK75344.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str. MC2 155] Length = 337 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 94/244 (38%), Gaps = 30/244 (12%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG RI+ + A+ + D + L P P +HG+T E L Sbjct: 26 VVDVETTGFRPGQARIVSVAALAVGDDGSVEHSMSSLLNPG---VDPGPTHVHGLTAEML 82 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + +P F+ + E + +AHNA FD F+ AE + + + + + Sbjct: 83 EGQPCFADVVDELIEVLRG--RTLVAHNAGFDYSFLAAEAELVGAELPIDTAMCTVELAR 140 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY---------------IKMM 175 R + + L +L +G+T H AL D+ +L+ + ++ + Sbjct: 141 RLELGTENLRLETLAAHWGVTQMKP--HDALDDALVLAQILKPTLARARDRKVWLPLRQL 198 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVP----NISLLKRDKPLF----TRITKEELDEHDKT 227 N +E R K E +P N +PL ++ E + H++ Sbjct: 199 TRKRWPNGHVTHDELRPLKVEASRLPCRYANPGPFVAGRPLVQGMRVALSAEVVRTHEEL 258 Query: 228 IQTL 231 ++ + Sbjct: 259 LERV 262 >gi|116514018|ref|YP_812924.1| Rad3-related DNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093333|gb|ABJ58486.1| Rad3-related DNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 930 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 62/205 (30%), Gaps = 3/205 (1%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + DRII+ G + D +T+ + P+ RK L GI Sbjct: 10 FAVVDLETTGTRKEEGDRIIQFGCAIVKDGEVV-KTYSFMMNPH-RKIPLAVTNLTGIDQ 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + D+ F + + + N F ++ Sbjct: 68 KMVADQADFKHYAPKIREILQDTVFVAHNVNFDFPFLNYELTNAGFEALTCKAVDTVELA 127 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 IA PS + + H++ A + LL + K+ + Sbjct: 128 KIAFPTLPSYKLRDLTASLEIKHANPHKADSDAYGTAVLLLKIIDKLASLPQATLNVLGS 187 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPL 212 ++ + I+ R Sbjct: 188 LASGLIRDTGDVIKVIADQSRQSRR 212 >gi|260597773|ref|YP_003210344.1| ribonuclease T [Cronobacter turicensis z3032] gi|260216950|emb|CBA30569.1| Ribonuclease T [Cronobacter turicensis z3032] Length = 223 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL---DYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L D T + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAVTLKMDADGWLTPDETLHFHVEPFEGAILQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + N A +AHNA FD F+ A +R + Sbjct: 80 IDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCNRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L C G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLAKACIAAGMPFDSAQAHSALYDTEQTALLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|154487175|ref|ZP_02028582.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis L2-32] gi|154085038|gb|EDN84083.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis L2-32] Length = 261 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTGL ++ RIIE+GAV + K ++ + P + ++ GITD Sbjct: 99 YVAVDIETTGLG-RDARIIELGAVRIRHGRKVA-SYSQLVNPQ-IPIPAKVTQITGITDR 155 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE 93 +K KP+ +F+ F Sbjct: 156 NVKGKPTIDKALPKFYAFCGRDTWI 180 >gi|332312340|gb|EGJ25435.1| ATP-dependent helicase [Listeria monocytogenes str. Scott A] Length = 931 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + + R IV D+ETTG + + DRII+ A + + T+ FL P + Sbjct: 1 MEQMKQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 +L GI+ + +K+ P F + + + ++AHN FD F+ E+ Sbjct: 59 QELTGISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 107 >gi|163782941|ref|ZP_02177936.1| hypothetical protein HG1285_00160 [Hydrogenivirga sp. 128-5-R1-1] gi|159881621|gb|EDP75130.1| hypothetical protein HG1285_00160 [Hydrogenivirga sp. 128-5-R1-1] Length = 215 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPN 51 +VFD ETTGLD + ++ IGA+ +++YS + +F F+ P Sbjct: 40 FVVFDTETTGLDLRRAELVSIGALRVVNYSFNLSESFHRFVKPK 83 >gi|323339821|ref|ZP_08080090.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644] gi|323092694|gb|EFZ35297.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644] Length = 968 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 11/175 (6%) Query: 5 NKMR----KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 KM V D+E TG + +R+I+ V TF + P RK + Sbjct: 32 KKMSNLQTYAVVDLEMTGTNPNGSERLIQFSCVFTEGNKIV-NTFSTLINP-LRKIPEDV 89 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L ITD+ +K P+F + + ++ ++AHN + D F+N+E +RI LD Sbjct: 90 QNLTNITDKDVKSAPTFDEVAGTIYALLSD--TVFVAHNIELDYRFLNSEFERIGFPKLD 147 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I + L L G H H A D+ + ++++I + Sbjct: 148 LEGIDTVQLAQIAFPTLASYRLGDLAHFLGFKHKHP--HHADSDAFVTAELFILL 200 >gi|89894618|ref|YP_518105.1| hypothetical protein DSY1872 [Desulfitobacterium hafniense Y51] gi|89334066|dbj|BAE83661.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 929 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 12/185 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI+ +V DIETTG D ND IIE A+ + + + F V + P R+ L Sbjct: 1 MIKGK---IVVIDIETTGFDIYNDEIIEFAALCIEEGEE-AEAFSVLISP-RRQVPERIL 55 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GI+ E LK S + + D F + A + HN +FD+GF+ L ++ L Sbjct: 56 RLTGISPEELKQAGSLHAYRDKILDLFQD--AIIVGHNVEFDLGFLEQALTIHFENTLWD 113 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + I + L L K G+T ++ H AL D+ ++ G Sbjct: 114 TLEIA----RILYPNMPKYKLGDLTKSLGLTPLEKA-HRALFDARAAWELLQACWEKGLT 168 Query: 181 INFGF 185 ++ GF Sbjct: 169 LDLGF 173 >gi|110634574|ref|YP_674782.1| DNA polymerase III, epsilon subunit [Mesorhizobium sp. BNC1] gi|110285558|gb|ABG63617.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1] Length = 498 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 6/185 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD ETTGLD++ R++++ V + + + +F+ + P G P+++++HGITD Sbjct: 16 VAFDTETTGLDTRTARVVQVAGVAISRGAVRQDESFESLVHP-GMSIPPDSIRIHGITDG 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ P+F++++ F I + FD+ I E R P + Sbjct: 75 MLREAPAFAAVWRSF--EMFRGVRPLIGYAVGFDLAIIEREAARAGIRRKRPRTLCVRTL 132 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L +L G I R H AL D+ + V+ ++ + Sbjct: 133 SRIVNRDLRGHSLEALAAWLGFEIIGR--HQALDDAMAAAKVFTGLLPRLQAMGIRTFAE 190 Query: 189 EDRFF 193 +R Sbjct: 191 AERAS 195 >gi|313887234|ref|ZP_07820929.1| exonuclease [Porphyromonas asaccharolytica PR426713P-I] gi|312923325|gb|EFR34139.1| exonuclease [Porphyromonas asaccharolytica PR426713P-I] Length = 255 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 8/171 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIE TGLD NDRIIE+ ++L+ D + RT P E+ +HGITDE Sbjct: 10 VVFDIEATGLDITNDRIIELTILKLMPDGERIVRT--RRFNPE-MPIPAESTAIHGITDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F + + + + L+ + L + ID + Sbjct: 67 DVRDCPPFRACAKSLAELIDGCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLSRQHIDVQT 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I + P R+ H HGA D+ DV + + Sbjct: 127 IFHKMEP----RTLEGAVRFYCHREHIGAHGAEADTIATLDVLLAQLEKYG 173 >gi|226227968|ref|YP_002762074.1| exonuclease [Gemmatimonas aurantiaca T-27] gi|226091159|dbj|BAH39604.1| exonuclease [Gemmatimonas aurantiaca T-27] Length = 323 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 18/226 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR +V D+ETTGLD+ D IIE GAV + R + V + P + Sbjct: 47 MRGLVVDVETTGLDTARDVIIEFGAVPFDFDGE-GRVYTV--------HPPLSYFEDPGR 97 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + A A + V NA R + P+ Sbjct: 98 PIPAEASAITGITDDDVRGKRIDDAAVLAALDQAVLVIAHNAGFDRRMLERRLPAFAAKH 157 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + ++++ P R S Y + R+ H + + ++ ++ Sbjct: 158 WACSQQEVPWVRFGSRSQKLDYLLYRIARAFHTGHRAADDCL-ATLHLLASAHPVSPSDS 216 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRI----TKEE----LDEH 224 +++ + + P LL+ + R+ T E L H Sbjct: 217 SDDVEDVRSAVQIAPLQLLLQHARRRTYRLWATGTPIEVKDVLKAH 262 >gi|320161625|ref|YP_004174850.1| hypothetical protein ANT_22240 [Anaerolinea thermophila UNI-1] gi|319995479|dbj|BAJ64250.1| hypothetical protein ANT_22240 [Anaerolinea thermophila UNI-1] Length = 194 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 47/163 (28%), Gaps = 7/163 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ETTGL ++ D IIEI V + ++ + P ++ Sbjct: 26 IYLDTETTGLSAQ-DEIIEISIVN-DNGEVV---YESLVRPTRPIPPDAIAVHGISNEDV 80 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 K +P I + + +N +FD+ + R+ D R D + + Sbjct: 81 QKARP--WHIVWQEVRPILLNAGVVVIYNEEFDLRMMQQSHARLGLPWRDRFRTFDLMKL 138 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + +D + Sbjct: 139 YAEYYGEWDPKRRAYRYHSLDAAGKHCGITLPNAHRATADTLL 181 >gi|315224228|ref|ZP_07866068.1| exonuclease [Capnocytophaga ochracea F0287] gi|314945961|gb|EFS97970.1| exonuclease [Capnocytophaga ochracea F0287] Length = 258 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 75/222 (33%), Gaps = 19/222 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG+D DRI+EI +++ + +K ++T+ + P A +HGITDE Sbjct: 11 FFDLETTGIDITKDRIVEISILKVYPNGNKESKTW--LVNP-TIPIPKAASDVHGITDER 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + +P+F + + + + + + L+ L +D +I Sbjct: 68 VAGEPTFKELAKQIHNMIKDSDLAGYNSDRFDIPLLAEEMLRAEVDFDLGNRVSVDVQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + S ++ H A D++ ++ + + K Sbjct: 128 FHK----MEQRTLSAAYKFYCGKDLIDAHTASADTNATYEILKAQLDRYDSLENNIKKLS 183 Query: 190 D-----------RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + F K + K I EE Sbjct: 184 EFTYRKQIADFAGFIGYNDKGEEIFTFGKHKGKRVEDIFDEE 225 >gi|317047907|ref|YP_004115555.1| ribonuclease T [Pantoea sp. At-9b] gi|316949524|gb|ADU68999.1| ribonuclease T [Pantoea sp. At-9b] Length = 222 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 13/203 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A +++ D + T + P G +PEAL G Sbjct: 20 VVIDVETAGFNAKTDALLEIAATTLKMDDDGWLHCDETLHFHVEPFEGAILNPEALAFTG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A +AHNA FD F+ A +R+ Sbjct: 80 IDPSNPLRGAVSEYDALHAIFKMVRKGMKDSHCNRAIIVAHNATFDHNFLMAAAERVGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L CK G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACKAAGMDFDSTQAHSALYDTEQTAILFCELVN 199 Query: 177 GGSQINFGFKTNEDRFFKEEKKT 199 ++ D +E+ Sbjct: 200 RWKRLGGWPLAYSDDLSEEDAAE 222 >gi|307717338|gb|ADN88722.1| DNA polymerase III [Listeria welshimeri] gi|307717340|gb|ADN88723.1| DNA polymerase III [Listeria welshimeri] gi|307717362|gb|ADN88734.1| DNA polymerase III [Listeria welshimeri] gi|307717368|gb|ADN88737.1| DNA polymerase III [Listeria welshimeri] gi|307717392|gb|ADN88749.1| DNA polymerase III [Listeria welshimeri] Length = 231 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 6/194 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + F + + +AHNA FD+GFIN +++ + D + + Sbjct: 59 SDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKADNAVVDTLELARFL 116 Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDINFHDSLND 174 Query: 193 FKEEKKTVPNISLL 206 + E Sbjct: 175 YMGEGDAYKRARPF 188 >gi|307244994|ref|ZP_07527091.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854159|gb|EFM86367.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 218 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 14/197 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET GL+++ D ++E+ A+ + + ++ + P G +P++LK +G Sbjct: 21 VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + P + Q A +AHNA FD F+ A ++RIN Sbjct: 81 IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQAFVQAAVKRINAK 140 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I + H AL D+ ++++ M+ Sbjct: 141 RDPFHPFAMFDTATLAGFMFGQTVLVKACQMAKIPFDGKQAHSALYDTEKTTELFCAMVN 200 Query: 177 GGSQI-NFGFKTNEDRF 192 + F ++ + Sbjct: 201 RLKGLGGFPLVSDSESN 217 >gi|313123658|ref|YP_004033917.1| ATP-dependent DNA helicase ding [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280221|gb|ADQ60940.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 929 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 62/205 (30%), Gaps = 3/205 (1%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + DRII+ G + D +T+ + P+ RK L GI Sbjct: 9 FAVVDLETTGTRKEEGDRIIQFGCAIVKDGEVV-KTYSFMMNPH-RKIPLAVTNLTGIDQ 66 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + F + + ++ N F ++ Sbjct: 67 KMVAGQADFKHYAPKIREILQDKVFVAHNVNFDFPFLNYELTNAGFEALTCKAVDTVELA 126 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 IA PS + + H++ A + LL + K+ + Sbjct: 127 KIAFPTLPSYKLRDLTASLEIKHANPHKADSDAYGTAVLLLKIIDKLASLPQATLNVLGS 186 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPL 212 ++ + I+ R Sbjct: 187 LASGLIRDTGDVIKVIADQSRQSRR 211 >gi|284931104|gb|ADC31042.1| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma gallisepticum str. F] Length = 1494 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 15/228 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT---------FQVFLCPNG 52 ++ +K+ ++FDIETTGL++ ++IIEI AV + F+ + Sbjct: 403 LKLDKLSFVIFDIETTGLNAYYEQIIEIAAVRVKAELNETNHQLEFVQLGKFEKLIKNE- 461 Query: 53 RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + S +L G+ D LKD ++ EF +F + + +AHN Sbjct: 462 KPLSKFTTQLTGLKDSDLKDAQDEKTVLEEFANFIQK-DDVLVAHNGIDFDFIWINTKLD 520 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 K + ++D+L +A + + R L +L + G H A D+ LL+ + Sbjct: 521 KYKLKPLDNPMLDSLRLAYQLYQFKRYTLENLSLKLGYEYDKTLAHRANYDTELLAKCLM 580 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 M+ N+ + +++K + +S K +I E+ Sbjct: 581 IMLSQIYAKNWRSLLD----LNDQEKLLNYLSEKSLKKAANLKINDED 624 >gi|149276274|ref|ZP_01882418.1| DNA polymerase III epsilon subunit [Pedobacter sp. BAL39] gi|149232794|gb|EDM38169.1| DNA polymerase III epsilon subunit [Pedobacter sp. BAL39] Length = 334 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 72/191 (37%), Gaps = 8/191 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG++ +DRI+EI ++ + D ++ +T + + P + +HGI DE Sbjct: 11 FFDLETTGVNVGSDRIVEIAILKAMPDGTELIKTLR--INPE-MPIPLASSLIHGIYDEH 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + +P+F ++ +E +F + + N + L+ + + +D +I Sbjct: 68 IAAEPTFKAVAAEVAEFIGDADLAGYNSNRFDIPVLLEEFLRAGVDFDMSDRKFVDVQNI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + ++ + H A D V + + + +F K Sbjct: 128 FHQ----MEQRTLKAAYKFYCDKDIINAHSAEADITATYHVLLAQIERYADTDFEDKQGN 183 Query: 190 DRFFKEEKKTV 200 + Sbjct: 184 VSKPVQNSVEA 194 >gi|74316845|ref|YP_314585.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC 25259] gi|74056340|gb|AAZ96780.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans ATCC 25259] Length = 470 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 7/177 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R D+ETTG ++ DR+ EI ++ T+ + P R +L GI++ Sbjct: 9 RLAFVDLETTGANAARDRVTEI--GVVVVDGDRVETWSTLVNPE-RAIPQFIQQLTGISN 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + D P+F+ + E + + +IAHNA+FD GF+ + + ++ T+ Sbjct: 66 EMVADAPTFARVADELAERLDG--RLFIAHNARFDYGFLK--HEYQRLGRRFRADVLCTV 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 ++RR P + +H AL D+ L+ + + Sbjct: 122 RLSRRLFPEHYRHNLDSLIARHGLATEGDRHRALADADLIWQFWRTLQREHEAQALA 178 >gi|325686250|gb|EGD28293.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 930 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 3/205 (1%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + DRII+ G + D +T+ + P+ RK L GI Sbjct: 10 FAVVDLETTGTRKEEGDRIIQFGCAIVKDGEVV-KTYSFMMNPH-RKIPLAVTNLTGIDQ 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + F + + + N F ++ Sbjct: 68 KMVAGQADFKHYAPKIREILQDTVFVAHNVNFDFPFLNYELTNAGFEALTCKAVDTVELA 127 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 IA PS + + H++ A + LL + K+ + Sbjct: 128 KIAFPTLPSYKLRDLTASLEIKHANPHKADSDAYGTAVLLLKIIDKLASLPQATLNVLGS 187 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPL 212 ++ + I+ R Sbjct: 188 LASGLIRDTGDVIKVIADQSRQSRR 212 >gi|313204261|ref|YP_004042918.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter propionicigenes WB4] gi|312443577|gb|ADQ79933.1| Exonuclease RNase T and DNA polymerase III [Paludibacter propionicigenes WB4] Length = 255 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 61/206 (29%), Gaps = 8/206 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + DRI+EI ++ + + T + + P + +HGI D Sbjct: 10 VFFDLETTGTNIVTDRIVEIAYHKVSPNGRE--ETKSIRINPEMH-IPESSSAIHGIYDA 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F ++ E + N L+ L + +D Sbjct: 67 DVADCPTFKAVAKEIVRDIEGCDLAGYNSNRFDIPLLAEELLRADIDIDLMKRKFVDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + ++ HGA D+ +V + ++ Sbjct: 127 VFHK----MEQRTLGAAYKFYCDKDLVGAHGAEADTLATYEVLKAQLDRYPELKNDVDFL 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFT 214 + + Sbjct: 183 AKFTTQSNNVDFAGRIVYDDKGEEII 208 >gi|307717322|gb|ADN88714.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] gi|307717324|gb|ADN88715.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] gi|307717408|gb|ADN88757.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] gi|307717412|gb|ADN88759.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] gi|307717418|gb|ADN88762.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] Length = 231 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 6/194 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + F + + +AHNA FD+GFIN +++ + + Sbjct: 59 SDPIEVVLQRFKE--WSADDILVAHNASFDMGFINTAYEKVGIPKAKNAVVDTLELARFL 116 Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIEYHDSLND 174 Query: 193 FKEEKKTVPNISLL 206 + E Sbjct: 175 YMGEGDAYKRARPF 188 >gi|307545330|ref|YP_003897809.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581] gi|307217354|emb|CBV42624.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581] Length = 682 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 5/96 (5%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 + FD ETTGL + DR+I +GA +++ + TF+ + P R + +HG+ D Sbjct: 491 VAFDTETTGLALREGDRLISLGACRIVNGRLLADETFEQHVNPQ-RPIPSASTAIHGLGD 549 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103 + +++ P+ + F D+ A +AHNA FD+ Sbjct: 550 QDVENAPTAEQVLPRFRDYVGS--AVLLAHNAAFDM 583 >gi|300812428|ref|ZP_07092858.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496595|gb|EFK31687.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 930 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 3/205 (1%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + DRII+ G + D +T+ + P+ RK L GI Sbjct: 10 FAVVDLETTGTRKEEGDRIIQFGCAIVKDGEVV-KTYSFMMNPH-RKIPLAVTNLTGIDQ 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + F + + + N F ++ Sbjct: 68 KMVAGQADFKHYAPKIREILQDTVFVAHNVNFDFPFLNYELTNAGFEALTCKAVDTVELA 127 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 IA PS + + H++ A + LL + K+ + Sbjct: 128 KIAFPTLPSYKLRDLTASLEIKHANPHKADSDAYGTAVLLLKIIDKLASLPQATLNVLGS 187 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPL 212 ++ + I+ R Sbjct: 188 LASGLIRDTGDVIKVIADQSRQSRR 212 >gi|328956370|ref|YP_004373703.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2] gi|328456694|gb|AEB07888.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2] Length = 977 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGL ++D +IEI A L T R F+ F+ P + E ++L GI D Sbjct: 50 VVLDTETTGLSRQDDELIEISAAVLSGREVTER-FETFVRP-SKPIPAEIVELTGIRDAD 107 Query: 70 LKDKPS 75 ++D P Sbjct: 108 VRDAPP 113 >gi|320533426|ref|ZP_08034111.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337] gi|320134363|gb|EFW26626.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337] Length = 259 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 55/150 (36%), Gaps = 4/150 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL D I+E+ V + R++ + P G +HG+ E Sbjct: 42 YAVVDLETTGLSPATDSILEVALVVTDAAGRVERSWSTLVDP-GAGVDVGPTHIHGLVAE 100 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L P + +AHNA+FDVGF+ L + T+ Sbjct: 101 ELIGAPGLDDVADLLVADLAG--RAVVAHNARFDVGFLTQALGTRGLLDRGARVPRVCTM 158 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK 157 AR + L + C+ G+ I Sbjct: 159 EWARHFMTTPSRRLTTCCEVAGVEIGRHHN 188 >gi|307717320|gb|ADN88713.1| DNA polymerase III [Listeria monocytogenes] gi|307717330|gb|ADN88718.1| DNA polymerase III [Listeria monocytogenes] gi|307717378|gb|ADN88742.1| DNA polymerase III [Listeria monocytogenes] gi|307717380|gb|ADN88743.1| DNA polymerase III [Listeria monocytogenes] gi|307717394|gb|ADN88750.1| DNA polymerase III [Listeria monocytogenes] gi|307717396|gb|ADN88751.1| DNA polymerase III [Listeria monocytogenes] Length = 231 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 85/194 (43%), Gaps = 7/194 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + F + + +AHNA FD+GFIN +++ + + + + Sbjct: 59 SDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELARFL 116 Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKTNEDR 191 + LN+L K++ I H A+ D+ + + K++ ++ N F + + Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHDSLND 174 Query: 192 FFKEEKKTVPNISL 205 + E Sbjct: 175 YMGEGDAYKRARPF 188 >gi|294083688|ref|YP_003550445.1| DNA polymerase III subunit epsilon [Candidatus Puniceispirillum marinum IMCC1322] gi|292663260|gb|ADE38361.1| DNA polymerase III, epsilon subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 730 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 8/170 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + D+ETTGL + DRI++IGA+ + + ++ + P G + +HGI Sbjct: 34 VSLDLETTGLKPQTDRIVQIGAIGVDVAVAADRAEDDHIEMLVDP-GIAVPAASTAVHGI 92 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D L D + F N+ + +N FD+ F+ E +R + + Sbjct: 93 NDAMLADAKPIAVALPALRSFINK--RIILGYNIGFDLAFLTNEAKRQGLEWKWSGALCL 150 Query: 126 TLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P + + L + +H AL D+ + + VY KM Sbjct: 151 RQLATVLLGPEAMLMIADLDALAAHYGVPVIGRHTALGDATITAQVYHKM 200 >gi|212712065|ref|ZP_03320193.1| hypothetical protein PROVALCAL_03142 [Providencia alcalifaciens DSM 30120] gi|212685587|gb|EEB45115.1| hypothetical protein PROVALCAL_03142 [Providencia alcalifaciens DSM 30120] Length = 214 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + K D ++EI A+ L + + T + P G P AL+ G Sbjct: 20 VVIDVETGGFNPKTDGLLEIAAITLKMDKDGWLAIDETLHFHVEPFEGANLEPSALEFTG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A +AHNA FD F+ +R Sbjct: 80 IDPTNPLRGAVSEYDALHAIFKTIRKGMKNTDCNRAIMVAHNANFDHSFVMNAAERSGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI + HGAL D++ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVFGQTILAKACVTAGIPFDGKQAHGALYDTNRTALLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 KWKKLG 205 >gi|104774002|ref|YP_618982.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423083|emb|CAI97804.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325125707|gb|ADY85037.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 930 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 3/205 (1%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + DRII+ G + D +T+ + P+ RK L GI Sbjct: 10 FAVVDLETTGTRKEEGDRIIQFGCAIVKDGEVV-KTYSFMMNPH-RKIPLSVTNLTGIDQ 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + F + + + N F ++ Sbjct: 68 KMVAGQADFKHYAPKIREILQDTVFVAHNVNFDFPFLNYELTNAGFEALTCKAVDTVELA 127 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 IA PS + + H++ A + LL + K+ + Sbjct: 128 KIAFPTLPSYKLRDLTASLEIKHANPHKADSDAYGTAVLLLKIIDKLASLPQATLNVLGS 187 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPL 212 ++ + I+ R Sbjct: 188 LASGLIRDTGDVIKVIADQSRQSRR 212 >gi|78186872|ref|YP_374915.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273] gi|78166774|gb|ABB23872.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273] Length = 236 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 8/182 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +VFD ETTG D K D +I IGAV + S +F+V + + S + Sbjct: 48 RMVVFDTETTGFDLKTDGVISIGAVAINGLSINVADSFEVLVRQDRVGRSEAVAVHGLLK 107 Query: 67 DEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + + + + + +A + L D + Sbjct: 108 KDIAGGAGEVEAAEAFLEYIGSSILVAQHASFDVAMLNRILSETFRIRLFNGVVDTASLA 167 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + ++ H + L+ LC+RYGI +H A D+ L + + +++ G Sbjct: 168 KRLEKGPYYNLAHKAGEYRLDHLCQRYGIR--LYDRHTAAGDAFLTAQLLQRLLSKGRSA 225 Query: 182 NF 183 Sbjct: 226 GI 227 >gi|269960762|ref|ZP_06175133.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834426|gb|EEZ88514.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 238 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 63/168 (37%), Gaps = 2/168 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGIT 66 IV D+ETTGLDS+ D I+ IG V++ + T +++ + + A+ H Sbjct: 50 NYIVLDLETTGLDSEEDLILSIGWVDIANGKVDLATSQHMYINSDSQIKPETAVINHITP 109 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ + F + + + ++++ PL + Sbjct: 110 QMLSEGVSIHDAMRAFFHAAKGKILVAHACVVETQFINQYLHRVFKLSEPPLVWLDTMCI 169 Query: 127 LSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++ +P D+ R + + H AL D+ +++ + Sbjct: 170 EKHLQKAINPRDEIDVTLSGTRARYGLPEYNGHNALADAVATAELLLA 217 >gi|261335679|emb|CBH18673.1| exonuclease, putative [Trypanosoma brucei gambiense DAL972] Length = 366 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 7/73 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDY-------SKTNRTFQVFLCPNGRKNSPEALKL 62 + D+ETTG+ D II I VELL + R+F + P + +S Sbjct: 104 VCIDVETTGIAPTKDEIISIAVVELLFGAAGHNQWVLSGRSFHRLVKPTKKVSSSAYRVH 163 Query: 63 HGITDEFLKDKPS 75 + + P Sbjct: 164 KLTSKVLERQPPF 176 >gi|149375575|ref|ZP_01893345.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter algicola DG893] gi|149360280|gb|EDM48734.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter algicola DG893] Length = 240 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 56/185 (30%), Gaps = 7/185 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGLD I+ IG V L + + + P ++ +HGIT Sbjct: 50 FVAVDFETTGLDPDKHSIVSIGVVPFTLGRVQLGGSRHWLVKPQL-PLHQTSVTIHGITH 108 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P + E + N + + + + + + Sbjct: 109 TDIDKAPDLDDVLDEILKSLAGRIPVVHYRNIERPFLNMALKWRIGEEIRFPVMDTMAIE 168 Query: 128 SIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + S + + + H ++ + + ++++ Q + Sbjct: 169 AYLHPNRKRSWWQKLKGQQPISIRLADSRLRYGLPHYPPHNALVDALASAELLMAQVQHH 228 Query: 183 FGFKT 187 F +T Sbjct: 229 FSPET 233 >gi|307717390|gb|ADN88748.1| DNA polymerase III [Listeria welshimeri] Length = 231 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 84/194 (43%), Gaps = 6/194 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + F + + +AHNA FD+GFIN +++ + D + + Sbjct: 59 SDPIDVVLKRFKE--WSGDDILVAHNASFDMGFINTAYEKVGLEKADNAVVDTLELARFL 116 Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDINFHDSLND 174 Query: 193 FKEEKKTVPNISLL 206 + E + Sbjct: 175 YMGEGEAYKRARPF 188 >gi|221195203|ref|ZP_03568259.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626] gi|221185106|gb|EEE17497.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626] Length = 1031 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGL K +IEI A ++ R F+ F+ P + PE + L ITDE Sbjct: 65 VVLDTETTGLSFKTCGLIEISAAKISGREIVER-FETFVDP-RKPIPPEIVALTHITDED 122 Query: 70 LKDKP 74 + P Sbjct: 123 VAGAP 127 >gi|307717354|gb|ADN88730.1| DNA polymerase III [Listeria innocua] Length = 231 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 6/194 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + +F + + +AHNA FD+GFIN +++ + + + Sbjct: 59 SDPIDVVLKQFKE--WSGDNILVAHNASFDMGFINTAYEKVGIEKAKNAVVDTLELARFL 116 Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIEFHDSLND 174 Query: 193 FKEEKKTVPNISLL 206 + E Sbjct: 175 YMGEGDAYKRARPF 188 >gi|56965684|ref|YP_177418.1| hypothetical protein ABC3926 [Bacillus clausii KSM-K16] gi|56911930|dbj|BAD66457.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 238 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 6/165 (3%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ET+G + D I+ IGAV++ N F + P + E L+L G++ + Sbjct: 55 VVFDLETSGFHPDQGDGILSIGAVKVTGNEVHNDHFYETIKPK-QPPCEEVLRLTGLSLQ 113 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + + F+D A +AH+A + F+ + I T Sbjct: 114 ELDHSPPINDVLLRFYD--FAGAATLVAHHAAHERKFMRHATWQELGRTFTHRLIDTTFL 171 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L+ C YGI I +H AL D+ + + ++ K Sbjct: 172 TNITAAHQQFQTLDEWCDAYGIAI--NQRHHALADARMTAKLWAK 214 >gi|107022085|ref|YP_620412.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116689029|ref|YP_834652.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] gi|170732318|ref|YP_001764265.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3] gi|254246035|ref|ZP_04939356.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|105892274|gb|ABF75439.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116647118|gb|ABK07759.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] gi|124870811|gb|EAY62527.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|169815560|gb|ACA90143.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia MC0-3] Length = 375 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 8/165 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + RI EIG VE+ + T+ + P G+ P +L GI+D Sbjct: 16 VFVDLETTGGSLADHRITEIGVVEIGPLGVS--TWTSLVNP-GQAIPPFIQQLTGISDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D P+F+S+ ++ + ++AHNA FD GF+ AE +R Sbjct: 73 VRDAPTFASLAPALFERLDG--KLFVAHNASFDRGFLRAEFERAGLAFNPDVLCT-VRLS 129 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 SR+ L++L +R+G+ ++H AL D+ LL + ++ Sbjct: 130 RALFPRESRHGLDALIERHGLV--PAARHRALADADLLWQFWRQL 172 >gi|332299738|ref|YP_004441659.1| Exonuclease RNase T and DNA polymerase III [Porphyromonas asaccharolytica DSM 20707] gi|332176801|gb|AEE12491.1| Exonuclease RNase T and DNA polymerase III [Porphyromonas asaccharolytica DSM 20707] Length = 255 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 8/171 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIE TGLD NDRIIE+ ++L+ D + RT P E+ +HGITDE Sbjct: 10 VVFDIEATGLDITNDRIIELTILKLMPDGERIVRT--RRFNPE-MPIPAESTAIHGITDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F + + + + L+ + L + ID + Sbjct: 67 DVRDCPPFRACAKSLAELIDGCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLSRQHIDVQT 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I + P R+ H HGA D+ DV + + Sbjct: 127 IFHKMEP----RTLEGAVRFYCHREHIGAHGAEADTIATLDVLLAQLDKYG 173 >gi|238762495|ref|ZP_04623465.1| Ribonuclease T [Yersinia kristensenii ATCC 33638] gi|238699140|gb|EEP91887.1| Ribonuclease T [Yersinia kristensenii ATCC 33638] Length = 226 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L + + T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVEPFEGANLQPEALAFNG 90 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 91 IDPSNPLRGAVSEHDALHAIFKAVRKGLKDKGCNRAIIVAHNAHFDHSFVMAAAERASLK 150 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D+ + ++ +++ Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCELVN 210 Query: 177 GGSQIN 182 ++ Sbjct: 211 RWKKLG 216 >gi|310659214|ref|YP_003936935.1| helicase, uvrd/rep/exonuclease family protein [Clostridium sticklandii DSM 519] gi|308825992|emb|CBH22030.1| putative Helicase, UvrD/REP/exonuclease family protein [Clostridium sticklandii] Length = 828 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 77/214 (35%), Gaps = 12/214 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGLD K D+II+I A++ + + F+ F+ + + Sbjct: 469 VVFDVETTGLDIKKDKIIQIAALKGGKNGVL--QKFERFIKIDYSVGDSFKIHNISDEFL 526 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 F + S+I Q++ + HN +D+ + ++ I+ + S I Sbjct: 527 FQNGVDAKSAIDDFL---LFSQDSVIVGHNVSYDINILKENMKAIDLNIDKLSSKIFDTL 583 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY----IKMMVGG--SQIN 182 I RK +++H H A+ D +V K++ Q Sbjct: 584 ILTRKTYPGFFSYKLGNLFKEFSLNHTPTHNAMDDVICTLEVLEKVVAKLLEKQAKRQAV 643 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F + + +S KR + + Sbjct: 644 FTKYQDYFYPIARNLGILAELSKEKRPQDILHEA 677 >gi|163847184|ref|YP_001635228.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus J-10-fl] gi|222525025|ref|YP_002569496.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl] gi|163668473|gb|ABY34839.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus J-10-fl] gi|222448904|gb|ACM53170.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl] Length = 951 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL S D IIE+ AV + +R F+ + P + + +L GI Sbjct: 6 YVAIDVETTGLQSGLDEIIEVAAVTFRGHEILDR-FEQLVRP-RQAVPLKITRLTGIDPA 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE 93 L P F+ I ++ F + Sbjct: 64 ALAQAPRFNEIGADLARFIGNRPIV 88 >gi|223946833|gb|ACN27500.1| unknown [Zea mays] gi|224030613|gb|ACN34382.1| unknown [Zea mays] Length = 315 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 9/121 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTG ++DRIIE +L+ N TFQ + P + ++ Sbjct: 117 VFDIETTGFSRRDDRIIEFAVRDLMGGK--NSTFQTLINPEKDVKNTYVHGINNSMLCRP 174 Query: 71 KDKPSFSSIFSEFWDFFNEQNA-----EWIAHN-AKFDVGFINAELQRINKDPLDPSRII 124 D P F I + + W+AHN FDV F+ E +R + + Sbjct: 175 -DVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGDWLFV 233 Query: 125 D 125 D Sbjct: 234 D 234 >gi|288560027|ref|YP_003423513.1| exonuclease [Methanobrevibacter ruminantium M1] gi|288542737|gb|ADC46621.1| exonuclease [Methanobrevibacter ruminantium M1] Length = 261 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 49/167 (29%), Gaps = 1/167 (0%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I FD ET+GL+ +IIE+G + + D + + R +S D Sbjct: 45 RIIFFDTETSGLNPNYCKIIELGMLVIEDGKII-EEYDKLINIGERIDSTITRITGITND 103 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + S + + + + + + + L Sbjct: 104 MLIDEGVSEGDVAQDLKEKLISGTLMIAYNCQFDLSFAYGLLKRHYPHEAEAIIEDVKWL 163 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I + + H A+ D+ L +V + + Sbjct: 164 DPMTVFKDRKAYPHKFSDAVEHYDIRNVNFHRAIGDAKGLYEVCLSL 210 >gi|282878339|ref|ZP_06287131.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310] gi|281299525|gb|EFA91902.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310] Length = 904 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 2/105 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL+ D I++I AV + +F VF+ R + ++ Sbjct: 523 VVFDTETTGLNVFEDDIVQIAAVRMRQGKVVPGSSFVVFME-TDRDIPQQLGEIENPLIA 581 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 ++ S ++ + HNA +D ++ LQR Sbjct: 582 EMQRHVLHSHAEGLQMFMDYVGDSMLLGHNADYDYHILDFNLQRY 626 >gi|190895636|ref|YP_001985928.1| DNA polymerase III subunit epsilon [Rhizobium etli CIAT 652] gi|190699581|gb|ACE93665.1| probable polymerase protein, epsilon subunit [Rhizobium etli CIAT 652] Length = 326 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 64/187 (34%), Gaps = 15/187 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ ++D IIEIGAV D ++ L R PE +L GI Sbjct: 75 VVLDTETTGLNHRSDEIIEIGAVAFTFDDDGSIGDIVGIYGGLQQPSRPIPPEVTRLTGI 134 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD ++ + I E IAHNA FD F A Sbjct: 135 TDAMVEGQ----VIDIRSLSDLIEPADLIIAHNAGFDRPFCEAFSPLFTGKAW------- 183 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 S++ + + L G H A+ D H L ++ + G Sbjct: 184 ACSVSEIDWSARGFEGTKLGYLVGQAGYFHEGHRAVDDCHALLEILDRQQGEGESPFAEL 243 Query: 186 KTNEDRF 192 R Sbjct: 244 YRASQRS 250 >gi|90415683|ref|ZP_01223617.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2207] gi|90333006|gb|EAS48176.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2207] Length = 528 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 6/106 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 KM ++ D+ETTG + + RIIEIG + + R +Q F+ P P KL GI Sbjct: 23 KM--VLLDLETTGGKATHHRIIEIGLLVIEQGKVLER-WQSFVDPETV-LPPFIQKLTGI 78 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 L+ P FS + + N+ +AHNA+FD GF+ E Q Sbjct: 79 APSMLRGAPLFSEVAETLLTYLND--RTLVAHNARFDYGFLKNEFQ 122 >gi|320450504|ref|YP_004202600.1| putative DNA polymerase III subunit epsilon [Thermus scotoductus SA-01] gi|320150673|gb|ADW22051.1| putative DNA polymerase III, subunit epsilon [Thermus scotoductus SA-01] Length = 247 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + +IE+G V L + R+FQ + P R SP +L GI Sbjct: 74 VVLDLETTGLSPGLNEVIEVGLVRLEQGER--RSFQSLVRP-SRPPSPFIERLTGIRAWE 130 Query: 70 LKDKP 74 L++ P Sbjct: 131 LEEAP 135 >gi|261416372|ref|YP_003250055.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372828|gb|ACX75573.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326099|gb|ADL25300.1| exonuclease, DNA polymerase III, epsilon subunit family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 188 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 4/117 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + V D+ETTG +++RI+EIG + L+D S+ T+ + P G+ +P +L GITD Sbjct: 3 KFAVVDLETTGGHGEDNRIMEIG-IALMDGSEIVETYHALVDP-GKPITPFVRELTGITD 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 E + +P F I + ++AHN +FD ++ AEL+R Sbjct: 61 EMVSGQPQFGVIAEHVAALLQD--RIFVAHNVQFDCKYMTAELKRCCIKFNPARLCT 115 >gi|254495210|ref|ZP_05108134.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152] gi|85819562|gb|EAQ40719.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152] Length = 1445 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 34/244 (13%), Positives = 79/244 (32%), Gaps = 23/244 (9%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + R I+I + + + P G + Sbjct: 2 YLIFDTETTGLPKSWNAPITDTDNWPRCIQIAWQLHDEMGRVIEHNDFLIQPEGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ------- 111 A ++HGI+ E + + ++ ++ + N +FD+ + E Sbjct: 62 AERIHGISTELAQQEGITLEEGLALFNEVLQKTKFVVGQNVEFDLNIMGCEFHRLATETN 121 Query: 112 --RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ + I + + + ++ I H A D + Sbjct: 122 LNQLPVLDTCTEKTALLCQIPGGRGGKFKLPTLTELHKHLFGIDFAEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 +++++ +++ F ++ I L+ K+E D+ K ++ Sbjct: 182 CFLELIRIREFTKEELDVDQEYFKNFSEENPKPIQLIGLKHINL----KKESDKIRKRLE 237 Query: 230 TLGK 233 L Sbjct: 238 KLKD 241 >gi|311696841|gb|ADP99714.1| exonuclease, RNase T and DNA polymerase III [marine bacterium HP15] Length = 242 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 5/135 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGLD+ I+ IG V LD + + + P ++ +HGIT Sbjct: 52 FVALDFETTGLDANQHSIVSIGLVPFTLDGIQLGKARHWIVRPKL-PLHQTSITIHGITH 110 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P + I + + N + + + + +IDT+ Sbjct: 111 SDIDQAPDLNDILKDLFACLNGRIPVV---HYRNIERSFFDVALQWRLGEGIRFPLIDTM 167 Query: 128 SIARRKHPSSRNDLN 142 +I HP Sbjct: 168 AIEAHLHPDRNPSRW 182 >gi|160901390|ref|YP_001566972.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1] gi|160366974|gb|ABX38587.1| Exonuclease RNase T and DNA polymerase III [Delftia acidovorans SPH-1] Length = 212 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCP 50 + D ETTGLD + D+II IGAV ++ ++ ++ + P Sbjct: 34 WVALDCETTGLDVRCDQIISIGAVRIVGERILSSERLELLVRP 76 >gi|237794676|ref|YP_002862228.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum Ba4 str. 657] gi|229260614|gb|ACQ51647.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum Ba4 str. 657] Length = 855 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 85/213 (39%), Gaps = 11/213 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+E+TG+++ D I++I +++ + + +FQ FL P + Sbjct: 494 NVVVFDVESTGINTTEDEIVQIAGIKINNKGEAIESFQRFLNPKKSVGDSYLVHGFSDQF 553 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + ++ + HN FD+ +N+EL+R++ + DTL Sbjct: 554 LKENGENKKVVLKDFLK---FIKDTVIVGHNVTFDISILNSELERLSLEKASFKTYYDTL 610 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF---- 183 IARR +PS N + +S H A+ D D+ + M+ + Sbjct: 611 DIARRFYPSLTNHKLETLSKL-FNTETKSSHDAMDDILATKDILMVMLREKVKPTIINRM 669 Query: 184 ---GFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 G + + EE + +S +K K + Sbjct: 670 VVYGKYIKKFQPIYEEIANLKKLSYIKNPKDII 702 >gi|328943837|ref|ZP_08241302.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Atopobium vaginae DSM 15829] gi|327491806|gb|EGF23580.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Atopobium vaginae DSM 15829] Length = 337 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 3/142 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++ DIET+GL+ +D+IIEIGA+ + D + +Q + + SP +L G+TD Sbjct: 169 KFVILDIETSGLNETDDKIIEIGAIRICDKQVDD--YQCLIKRDSLNLSPAITQLTGLTD 226 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L ++ ++ F + +N FD+ FIN EL+ +N++ LD I Sbjct: 227 IELANRGVNPNLALNGLKQFIGHLPV-LGYNIAFDMRFINNELRSMNEELLDNREIDVMR 285 Query: 128 SIARRKHPSSRNDLNSLCKRYG 149 I + K L+++ K YG Sbjct: 286 FIKKEKMFLESYALDNVLKVYG 307 >gi|170744636|ref|YP_001773291.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] gi|168198910|gb|ACA20857.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] Length = 296 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 67/237 (28%), Gaps = 29/237 (12%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCPNGRKNSPEALKLHGI 65 V D ETTGLD D +IE+G V + F P G+ +L GI Sbjct: 43 VLDTETTGLDPACDEVIELGIVAFTYGQSGRIYRVRHRFNQLHQP-GKPIPEAVTRLTGI 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD + K + IAHNA+FD + S Sbjct: 102 TDADVAGKRI----DDAAVAALAAKARVVIAHNARFDRRMCEVRWPFFAELNWACSCHQI 157 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS------ 179 + L + + H A+ D L + + + Sbjct: 158 DWRDEGHEAARLGGLLADHGRFHNG-------HRAIDDCEALLWLLAQPLRRSGRLALAA 210 Query: 180 ------QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 + ++ F + + N R + + + + +++ + Sbjct: 211 LLEAARRPTVRLWASDAPFALKNRLKDRNYRWSSRRRCWYIDLDEAQIEIERSFLSR 267 >gi|269926118|ref|YP_003322741.1| DNA polymerase III, epsilon subunit [Thermobaculum terrenum ATCC BAA-798] gi|269789778|gb|ACZ41919.1| DNA polymerase III, epsilon subunit [Thermobaculum terrenum ATCC BAA-798] Length = 960 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 2/85 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+E TG D + D II+IGAV+ R + + P + +L GI Sbjct: 7 FVALDLEMTGHDPEQDEIIQIGAVKFTQTRVLGR-WGTLVRPKVK-LPFRIARLTGINPN 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE 93 L P F ++ + F + Sbjct: 65 DLNKAPVFDAVKDKLRSFVGDHPIV 89 >gi|319944252|ref|ZP_08018528.1| exonuclease [Lautropia mirabilis ATCC 51599] gi|319742547|gb|EFV94958.1| exonuclease [Lautropia mirabilis ATCC 51599] Length = 230 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 37/136 (27%), Gaps = 1/136 (0%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+ + D II IGA ++ T ++ + P + Sbjct: 47 WVALDCETTGLNVRQDEIIAIGATRIVGRRLMTRERLELLVRPEREVSPDSVAVHRLRAQ 106 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P ++ + + + + Sbjct: 107 DVADGLPLCEAMERLLMFIGSRPLVGYYLEFDVAMIDRALKRCFGLTLPQRKIEVSAMYY 166 Query: 128 SIARRKHPSSRNDLNS 143 R+ P + N+ Sbjct: 167 DWRFRQLPPYQQHDNA 182 >gi|313623167|gb|EFR93428.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria innocua FSL J1-023] Length = 928 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K R IV D+ETTG + + DRII+ A + + T+ FL P + +L Sbjct: 2 KKKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYSTFLNPE-KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 GI+ + +K+ P F + + ++AHN FD F+ E+ Sbjct: 60 GISPKDVKNAPLFEDVAPIIASLLED--TIFVAHNVSFDWTFLEREM 104 >gi|227485452|ref|ZP_03915768.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Anaerococcus lactolyticus ATCC 51172] gi|227236582|gb|EEI86597.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Anaerococcus lactolyticus ATCC 51172] Length = 295 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 6/150 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I+ D+ETTGLD NDRIIEIGA+++ K N+ + + K S + + GI+DE Sbjct: 129 YIIIDLETTGLDPINDRIIEIGAIKI---GKENKEYSSIIW-QDIKLSEKISNITGISDE 184 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + +EF DF E + +N FD+ FIN L+R K + Sbjct: 185 DIKKGKDEKNAINEFIDFIGE--DTLVGYNINFDIKFINESLKRQEKPKIKNMTYDVMQY 242 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKH 158 + K L ++ K YGI + + Sbjct: 243 VKNDKLFLKNYKLETVIKEYGINKNVPHRA 272 >gi|16801079|ref|NP_471347.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria innocua Clip11262] gi|16414514|emb|CAC97243.1| dinG [Listeria innocua Clip11262] Length = 928 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K R IV D+ETTG + + DRII+ A + + T+ FL P + +L Sbjct: 2 KKKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYSTFLNPE-KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 GI+ + +K+ P F + + ++AHN FD F+ E+ Sbjct: 60 GISPKDVKNAPLFEDVAPIIASLLED--TIFVAHNVSFDWTFLEREM 104 >gi|322392646|ref|ZP_08066106.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780] gi|321144638|gb|EFX40039.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780] Length = 1463 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 7/211 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNIIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLKQVLQEFQEFCQD--TVLVAHNATFDVGFMNANYERHGLPKITQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185 R+ L L KR+G+ H + + A LL ++ N Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALDHHHMANYDAEATGRLLFIFIKEVAEKHGVTNLARL 600 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + +K V + ++ +++ I Sbjct: 601 NIDLISPDSYKKARVKHATIYVKNQIGLKNI 631 >gi|158424105|ref|YP_001525397.1| putative exonuclease [Azorhizobium caulinodans ORS 571] gi|158330994|dbj|BAF88479.1| putative exonuclease [Azorhizobium caulinodans ORS 571] Length = 334 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 74/232 (31%), Gaps = 17/232 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL--LDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 ++ D ETTGLD D +IE+G V + F L SP KL GI Sbjct: 83 VIVDTETTGLDHTRDEVIELGMVAFTYREGGAIGDVVDTFSALREPTVPISPVITKLTGI 142 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E + + SI E F + + IAHNA+FD F ++ + P S + Sbjct: 143 TPEMVAGQ----SIDLEAAARFIQPASIVIAHNARFDRPFCEHLVEGFDVKPWACSVVEV 198 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS-----HLLSDVYIKMMVGGSQ 180 + + + + + H L + +++ + Sbjct: 199 PWADFGFEGTKLGYLIGQCGMFHNGHRAVDDCHALLEVLAAPLKEATGTAFGRLLETARR 258 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228 F F ++ R K + + E L E + Sbjct: 259 PRFRVWAENSPFDMKDALKARGYRWNDGSDGRPKSWYREVEDEALGEEIAFL 310 >gi|329946199|ref|ZP_08293812.1| exonuclease, DNA polymerase III, epsilon subunit family [Actinomyces sp. oral taxon 170 str. F0386] gi|328527797|gb|EGF54788.1| exonuclease, DNA polymerase III, epsilon subunit family [Actinomyces sp. oral taxon 170 str. F0386] Length = 276 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 57/150 (38%), Gaps = 4/150 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL D I+E+ V + R++ + P G ++HG+ E Sbjct: 56 YAVVDLETTGLSPTTDSILEVALVLTDAAGRVERSWSTLIDP-GAGVDVGPTRIHGLVAE 114 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDTL 127 L P + +AHNA+FDVGF+ R D + T+ Sbjct: 115 ELSGAPGLDDVADLLVADLAG--RAVVAHNARFDVGFLTQALGARGLLDRGARVPRVCTM 172 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK 157 AR + L + C+ G+ I Sbjct: 173 EWARHFMTTPSRRLTTCCEVAGVEIGRHHN 202 >gi|242041211|ref|XP_002468000.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor] gi|241921854|gb|EER94998.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor] Length = 583 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 3/82 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTG + DRIIE +L+ N TFQ + P + + Sbjct: 385 VFDIETTGFSRREDRIIEFAVRDLMGGK--NSTFQTLINPEKEVRNAYVHGISNSMLCRP 442 Query: 71 KDKPSFSSIFSEFWDFFNEQNA 92 D P F + + + Sbjct: 443 -DVPRFGELVPILLQYVWSRQM 463 >gi|29374711|ref|NP_813863.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583] gi|227555735|ref|ZP_03985782.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22] gi|256761903|ref|ZP_05502483.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|29342169|gb|AAO79935.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583] gi|227175140|gb|EEI56112.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22] gi|256683154|gb|EEU22849.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|315573941|gb|EFU86132.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecalis TX0309B] gi|315581892|gb|EFU94083.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecalis TX0309A] Length = 289 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FDIETTGLD D +I+I A +D + F + + E KL GIT++ Sbjct: 8 FIAFDIETTGLDFHQDAVIQISAARYVDGIEV-DYFDTLVNSDY--IPDEITKLTGITND 64 Query: 69 FLKDKPSFSSIFSEFWDFF 87 + + P+ + +D+ Sbjct: 65 QVLNAPTLDEVMPYLFDYL 83 >gi|295693537|ref|YP_003602147.1| DNA polymerase iii [Lactobacillus crispatus ST1] gi|295031643|emb|CBL51122.1| DNA polymerase III [Lactobacillus crispatus ST1] Length = 318 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 3/160 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 DIETTGL DRI E+G V++ + ++ + + + + P + E Sbjct: 36 LDIETTGLYPYRDRITELGGVKVRNGQIVDQ-YTNLVKFSKNNSVPAFITKLNGITEEQI 94 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 K + + + I +N FD+ F+ Q+ LD + Sbjct: 95 VKEGIPAEQAIREFREFIGDDVIIGYNVNFDLNFLYDLSQKYGLPVLDNDYVDVLRLART 154 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 N L +R GI H L DS VY Sbjct: 155 YYPRERHNRLLDCMQRAGIA--QVEAHHGLQDSLDTIKVY 192 >gi|323699453|ref|ZP_08111365.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio sp. ND132] gi|323459385|gb|EGB15250.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio desulfuricans ND132] Length = 178 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 5/159 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + D ET D K D +G V + R + + P + +P +++HGI Sbjct: 8 RFVAIDFET--ADPKRDSACALGIVVVDRGEIVARDY-RLIRPPRARFNPFCVRVHGIHW 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + ++PSF + +AHNA FD ++ + + T+ Sbjct: 65 EDVCNEPSF-GDLWPELEVHFRGADFLVAHNAAFDKSVLHTCCKESGWTAP-EQPFLCTV 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 +AR+ S N L ++C+ GI ++H + L Sbjct: 123 QLARKTWELSCNKLPNVCEYLGIELNHHNAASDAEACAL 161 >gi|282856872|ref|ZP_06266130.1| DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens W5455] gi|282585290|gb|EFB90600.1| DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens W5455] Length = 196 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 6/177 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 DIETTGL I+EI A+++ + R+FQ+ + P GR + +HGI D + Sbjct: 12 ALDIETTGLSPAFCGIVEIAALKIFPDG-SQRSFQMLVDP-GRPIPRDVSAIHGIDDAMV 69 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + +PS + + F + + HNA FD+ F+N ++R P+ Sbjct: 70 RGQPSAADAVAALVSFVGP--SPLVLHNAPFDMSFLNPVVRRQRLQWDSPAVFDTLRLSR 127 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + L SL + + H AL D ++ +++ ++ F Sbjct: 128 QAFPGLNSYSLESLSRFF--DFDAGGHHRALADCRYCVQLFARILRKIRGLDMDFAA 182 >gi|259503450|ref|ZP_05746352.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041] gi|259168528|gb|EEW53023.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041] Length = 929 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Query: 12 FDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG DRII++G V + D NR F+ + P R ++L GI + + Sbjct: 2 VDLETTGTSVNHGDRIIQVGCVLVQDGQVINR-FETKINPRER-IPRAVVQLTGIQERDV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 + P F + + N F Sbjct: 60 RKAPLFEDVAGTIYSLLTGTIFVAHNVNFDF 90 >gi|195646046|gb|ACG42491.1| DNA polymerase III subunit epsilon [Zea mays] Length = 315 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 9/121 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTG ++DRIIE +L+ N TFQ + P + ++ Sbjct: 117 VFDIETTGFSRRDDRIIEFAVRDLMGGK--NSTFQTLINPEKDVKNTYVHGINNSMLCRP 174 Query: 71 KDKPSFSSIFSEFWDFFNEQNA-----EWIAHN-AKFDVGFINAELQRINKDPLDPSRII 124 D P F I + + W+AHN FDV F+ E +R + + Sbjct: 175 -DVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGDWLFV 233 Query: 125 D 125 D Sbjct: 234 D 234 >gi|238792291|ref|ZP_04635926.1| Ribonuclease T [Yersinia intermedia ATCC 29909] gi|238728528|gb|EEQ20047.1| Ribonuclease T [Yersinia intermedia ATCC 29909] Length = 226 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L + + T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVEPFEGANLQPEALAFNG 90 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGLKDQGCNRAIIVAHNANFDHSFVMAAAERASLK 150 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D+ + ++ +++ Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCELVN 210 Query: 177 GGSQIN 182 ++ Sbjct: 211 RWKKLG 216 >gi|307717400|gb|ADN88753.1| DNA polymerase III [Listeria seeligeri] Length = 231 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 6/194 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + F + + +AHNA FD+GFIN +++ + + + Sbjct: 59 SDPIDVVLKRFKE--WSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLELARFL 116 Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLGWKLIKDAKEMHDIDYHDSLND 174 Query: 193 FKEEKKTVPNISLL 206 + E Sbjct: 175 YMGEGDAYKRARPF 188 >gi|307717344|gb|ADN88725.1| DNA polymerase III [Listeria innocua] gi|307717350|gb|ADN88728.1| DNA polymerase III [Listeria innocua] gi|307717352|gb|ADN88729.1| DNA polymerase III [Listeria innocua] gi|307717386|gb|ADN88746.1| DNA polymerase III [Listeria innocua] Length = 231 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 84/194 (43%), Gaps = 6/194 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + +F + + +AHNA FD+GFIN +++ + + + + Sbjct: 59 SDPIDVVLKQFRE--WSGDDILVAHNASFDMGFINTAYEKVGLEKANNAVVDTLELARFL 116 Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIEFHDSLND 174 Query: 193 FKEEKKTVPNISLL 206 + E Sbjct: 175 YMGEGDAYKRARPF 188 >gi|307326641|ref|ZP_07605834.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] gi|306887625|gb|EFN18618.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] Length = 638 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 9/175 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ET+GL ++ DR++ + + + D +T F L P P +K+HG+T E L Sbjct: 23 VDVETSGLMARRDRVLSVAVITVGPDGEQTGE-FSTLLNPG---CDPGPVKVHGLTVERL 78 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P+F + + +AHNA+FD F+ E R R+ Sbjct: 79 QGAPTFDQVAGRIGAMLQD--RVLVAHNAQFDYDFLAHEFARARTWLPVSQRLCTLALNR 136 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + P+ L +L YGI H AL D+ +L+ + + +Q++ Sbjct: 137 QVDPPTGDMKLGTLAAHYGIPQQRA--HDALDDTRVLAGILRASLREAAQLDLPL 189 >gi|227877650|ref|ZP_03995697.1| DNA polymerase [Lactobacillus crispatus JV-V01] gi|256850746|ref|ZP_05556169.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|227862746|gb|EEJ70218.1| DNA polymerase [Lactobacillus crispatus JV-V01] gi|256712459|gb|EEU27457.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] Length = 318 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 3/160 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 DIETTGL DRI E+G V++ + ++ + + + + P + E Sbjct: 36 LDIETTGLYPYRDRITELGGVKVRNGQIVDQ-YTNLVKFSKNNSVPAFITKLNGITEAQI 94 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 K + + + I +N FD+ F+ Q+ LD + Sbjct: 95 VKEGIPAEQAIREFREFIGDDVIIGYNVNFDLNFLYDLSQKYGLPVLDNDYVDVLRLART 154 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 N L +R GI H L DS VY Sbjct: 155 YYPRERHNRLLDCMQRAGIA--QVEAHHGLQDSLDTIKVY 192 >gi|319945650|ref|ZP_08019902.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641] gi|319748249|gb|EFW00491.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641] Length = 1463 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPISAFTTDLTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ + EF +F + A +AHNA FDVGF+NA +R + I Sbjct: 483 HVRNAKPLKQVLEEFQEFCQD--AVLVAHNATFDVGFMNANYERHGLPKITQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|254360642|ref|ZP_04976791.1| exoribonuclease T [Mannheimia haemolytica PHL213] gi|153091182|gb|EDN73187.1| exoribonuclease T [Mannheimia haemolytica PHL213] Length = 215 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET GL+++ D ++E+ A+ L Y ++ + P G +PE+LK +G Sbjct: 23 VVIDVETAGLNAQTDALLELAAITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNG 82 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + P + + Q A +AHNA FD GF+ A ++RIN Sbjct: 83 IDIDNPLRGAVAENIAIPEMFKMVRKAMKEQGCQRAVIVAHNAAFDQGFLQAAIKRINAK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I + H AL D+ ++++ M+ Sbjct: 143 RDPFHPFAMFDTATLAGFMYGQTVLVKACQVAKIPFDGKQAHSALYDTERTAELFCAMVN 202 Query: 177 GGSQIN 182 + Sbjct: 203 RLKDLG 208 >gi|257876620|ref|ZP_05656273.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20] gi|257810786|gb|EEV39606.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20] Length = 1449 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52 IVFD+ETTGL + D IIE+ AV + + +F F+ P Sbjct: 423 YIVFDVETTGLSAVYDTIIELAAVRMHKGN-VEASFDEFIDPGH 465 >gi|307717334|gb|ADN88720.1| DNA polymerase III [Listeria seeligeri] gi|307717336|gb|ADN88721.1| DNA polymerase III [Listeria seeligeri] gi|307717366|gb|ADN88736.1| DNA polymerase III [Listeria seeligeri] gi|307717402|gb|ADN88754.1| DNA polymerase III [Listeria seeligeri] gi|307717406|gb|ADN88756.1| DNA polymerase III [Listeria seeligeri] Length = 231 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 6/194 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + F + + +AHNA FD+GFIN +++ + + + Sbjct: 59 SDPIDVVLKRFKE--WSADDILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLELARFL 116 Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLGWKLIKDAKEMHDIDYHDSLND 174 Query: 193 FKEEKKTVPNISLL 206 + E Sbjct: 175 YMGEGDAYKRARPF 188 >gi|262047863|ref|ZP_06020812.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] gi|312976690|ref|ZP_07788439.1| DNA polymerase III [Lactobacillus crispatus CTV-05] gi|260571856|gb|EEX28428.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] gi|310896018|gb|EFQ45083.1| DNA polymerase III [Lactobacillus crispatus CTV-05] Length = 318 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 3/160 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 DIETTGL DRI E+G V++ + ++ + + + + P + E Sbjct: 36 LDIETTGLYPYRDRITELGGVKVRNGQIVDQ-YTNLVKFSKNNSVPAFITKLNGITEEQI 94 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 K + + + I +N FD+ F+ Q+ LD + Sbjct: 95 GKEGIPAEQAIREFREFIGDDVIIGYNVNFDLNFLYDLSQKYGLPVLDNDYVDVLRLART 154 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 N L +R GI H L DS VY Sbjct: 155 YYPRERHNRLLDCMQRAGIA--QVEAHHGLQDSLDTIKVY 192 >gi|240947949|ref|ZP_04752376.1| ribonuclease T [Actinobacillus minor NM305] gi|240297743|gb|EER48202.1| ribonuclease T [Actinobacillus minor NM305] Length = 216 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET GL+++ D ++EI A+ + + ++ + P G + ++LK +G Sbjct: 21 VIIDVETAGLNAQTDALLEIAAITVKMDENGYLVPDQKCHYHIQPFEGANINQDSLKFNG 80 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + P + + Q A +AHNA FD GF+ A +RIN Sbjct: 81 IDIDNPLRGAVPENIAIPEMFKMVRKAMKEQGCQRAVIVAHNAAFDQGFLQAAAKRINAK 140 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I + H AL D+ ++++ M+ Sbjct: 141 RDPFHPFAMFDTATLAGFMYGQTVLVKACQIANIAFDGKQAHSALYDTEKTTELFCTMVN 200 Query: 177 GGSQIN 182 + Sbjct: 201 RLKDLG 206 >gi|115460648|ref|NP_001053924.1| Os04g0623400 [Oryza sativa Japonica Group] gi|113565495|dbj|BAF15838.1| Os04g0623400 [Oryza sativa Japonica Group] Length = 282 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 16/190 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTG K+ RI+E +L N TF+ + P R L I + + Sbjct: 64 VFDLETTGYFHKDHRIVEFALCDLSGGK--NSTFETLVNPE-RTVPDYVEHLIKIGTDLV 120 Query: 71 KDK--PSFSSIFSEFWDFFNEQNAE-----WIAHN-----AKFDVGFINAELQRINKDPL 118 P FS + F + A W+AHN A+F + + D L Sbjct: 121 CRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPLPADWL 180 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++ + + + R L +L + YGI H A+ D +LS V+ KM Sbjct: 181 FFDTLLLAKKMVKAEGKKRRTSLEALREHYGIVSH-DDAHRAMRDVMILSQVFQKMTFDL 239 Query: 179 SQINFGFKTN 188 N Sbjct: 240 KLTNEELINE 249 >gi|119383203|ref|YP_914259.1| exonuclease, RNase T and DNA polymerase III [Paracoccus denitrificans PD1222] gi|119372970|gb|ABL68563.1| Exonuclease, RNase T and DNA polymerase III [Paracoccus denitrificans PD1222] Length = 303 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 60/232 (25%), Gaps = 5/232 (2%) Query: 3 RKNKMRKI-VFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCPNGRKNSP 57 R +MR + + D ETTGLD DR++EI V+ + + GR P Sbjct: 48 RSTEMRIVAIIDTETTGLDPTTDRLVEIAIERLSVDARGRIIEMEHPRSWREDPGRSMPP 107 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 L G+TD L + A A + F A + Sbjct: 108 RLTLLTGLTDADLAGCAFDDESIVAQLGEADVIIAHNAAFDRPFVDVRFPALQHQAWGCS 167 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L + R H + + ++ Sbjct: 168 LTQLDWLTLGFDGRALGHLLFQAGWYFKGHRAEQDVHALATLLGSVAGDGRTIMSHLLER 227 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 + NF F ++ + + I + LD + Sbjct: 228 CDRPNFRIAAIGAPFNAKDLLKSRGYRWDPTHRYWWREIDADVLDGEKDWLD 279 >gi|256844192|ref|ZP_05549679.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] gi|256614097|gb|EEU19299.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] Length = 318 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 3/160 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 DIETTGL DRI E+G V++ + ++ + + + + P + E Sbjct: 36 LDIETTGLYPYRDRITELGGVKVRNGQIVDQ-YTNLVKFSKNNSVPAFITKLNGITEAQI 94 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 K + + + I +N FD+ F+ Q+ LD + Sbjct: 95 VKEGIPAEQAIREFREFIGDDVIIGYNVNFDLNFLYDLSQKYGLPVLDNDYVDVLRLART 154 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 N L +R GI H L DS VY Sbjct: 155 YYPRERHNRLLDCMQRAGIA--QVEAHHGLQDSLDTIKVY 192 >gi|229544880|ref|ZP_04433605.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX1322] gi|256616762|ref|ZP_05473608.1| exonuclease [Enterococcus faecalis ATCC 4200] gi|256854034|ref|ZP_05559399.1| exonuclease [Enterococcus faecalis T8] gi|256963842|ref|ZP_05568013.1| exonuclease [Enterococcus faecalis HIP11704] gi|257081701|ref|ZP_05576062.1| exonuclease [Enterococcus faecalis E1Sol] gi|257420127|ref|ZP_05597121.1| exonuclease [Enterococcus faecalis T11] gi|307271788|ref|ZP_07553059.1| exonuclease [Enterococcus faecalis TX0855] gi|307278717|ref|ZP_07559784.1| exonuclease [Enterococcus faecalis TX0860] gi|307290260|ref|ZP_07570176.1| exonuclease [Enterococcus faecalis TX0411] gi|312900097|ref|ZP_07759413.1| exonuclease [Enterococcus faecalis TX0470] gi|229309981|gb|EEN75968.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX1322] gi|256596289|gb|EEU15465.1| exonuclease [Enterococcus faecalis ATCC 4200] gi|256710977|gb|EEU26020.1| exonuclease [Enterococcus faecalis T8] gi|256954338|gb|EEU70970.1| exonuclease [Enterococcus faecalis HIP11704] gi|256989731|gb|EEU77033.1| exonuclease [Enterococcus faecalis E1Sol] gi|257161955|gb|EEU91915.1| exonuclease [Enterococcus faecalis T11] gi|306498681|gb|EFM68182.1| exonuclease [Enterococcus faecalis TX0411] gi|306504578|gb|EFM73781.1| exonuclease [Enterococcus faecalis TX0860] gi|306511666|gb|EFM80665.1| exonuclease [Enterococcus faecalis TX0855] gi|311292732|gb|EFQ71288.1| exonuclease [Enterococcus faecalis TX0470] gi|315030443|gb|EFT42375.1| exonuclease [Enterococcus faecalis TX4000] gi|315032587|gb|EFT44519.1| exonuclease [Enterococcus faecalis TX0017] gi|315143870|gb|EFT87886.1| exonuclease [Enterococcus faecalis TX2141] gi|315148698|gb|EFT92714.1| exonuclease [Enterococcus faecalis TX4244] gi|315151771|gb|EFT95787.1| exonuclease [Enterococcus faecalis TX0012] gi|315170466|gb|EFU14483.1| exonuclease [Enterococcus faecalis TX1342] gi|315174930|gb|EFU18947.1| exonuclease [Enterococcus faecalis TX1346] gi|327535953|gb|AEA94787.1| exonuclease [Enterococcus faecalis OG1RF] Length = 188 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 7/167 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M FD ET I V++ + + F + P ++HGI Sbjct: 12 MNFYAFDFET--ASYDKHSACSIAIVKVENSRIVDE-FYTLIKPETPFF-WRNTQIHGIH 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + P F + + N +AHNA FD + L + + + Sbjct: 68 ESDVVNAPKF-PEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 126 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + + LN++C+ IT + H AL DS +++ ++ Sbjct: 127 KTSRKLFPEFPNHKLNTVCENLNIT--LNNHHDALEDSRACAEILLQ 171 >gi|300776313|ref|ZP_07086171.1| exonuclease [Chryseobacterium gleum ATCC 35910] gi|300501823|gb|EFK32963.1| exonuclease [Chryseobacterium gleum ATCC 35910] Length = 254 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 71/193 (36%), Gaps = 6/193 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 +FD+ETTG + DRI+EI + ++ + + + P E ++HGI DE + Sbjct: 11 IFDLETTGTNIGKDRIVEI-CILKVNPDASRESKTWRVNPE-MPIPKECSEIHGIYDEDV 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD P+F I ++ + + + N L+ L+ R++D +I Sbjct: 69 KDAPTFRDIAAKIMEMISGSDLGGFNSNRFDVPLLAEELLRVGMDFDLNKFRLVDAQTIF 128 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 +K P ++ + + H A D +V + I + Sbjct: 129 HKKEP----RNLGAAYQFYCGKTLENAHSAEADVMATFEVLDAQVGKYDDIPNEIAPLSE 184 Query: 191 RFFKEEKKTVPNI 203 F + + Sbjct: 185 FTFHNKNADLAGF 197 >gi|74026182|ref|XP_829657.1| exonuclease [Trypanosoma brucei TREU927] gi|70835043|gb|EAN80545.1| exonuclease, putative [Trypanosoma brucei] Length = 366 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 7/73 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDY-------SKTNRTFQVFLCPNGRKNSPEALKL 62 + D+ETTG+ D II I VELL + R+F + P + +S Sbjct: 104 VCIDVETTGIAPTKDEIISIAVVELLFGAAGHNQWELSGRSFHRLVKPTKKVSSSAYRVH 163 Query: 63 HGITDEFLKDKPS 75 + + P Sbjct: 164 KLTSKVLERQPPF 176 >gi|257867714|ref|ZP_05647367.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30] gi|257874041|ref|ZP_05653694.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10] gi|257801797|gb|EEV30700.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30] gi|257808205|gb|EEV37027.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10] Length = 1449 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52 IVFD+ETTGL + D IIE+ AV + + +F F+ P Sbjct: 423 YIVFDVETTGLSAVYDTIIELAAVRMHKGN-VEASFDEFIDPGH 465 >gi|331002519|ref|ZP_08326037.1| hypothetical protein HMPREF0491_00899 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410335|gb|EGG89769.1| hypothetical protein HMPREF0491_00899 [Lachnospiraceae oral taxon 107 str. F0167] Length = 235 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 89/231 (38%), Gaps = 15/231 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 I D+ET+G+ ++D+IIE+G +++ D T TF + P N E L+L GI Sbjct: 5 NYIAIDLETSGIKLRSDKIIEVGLLKIKDSHIT-DTFSCLINPEIEIN-EEILRLTGIKK 62 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L + S + + +F + + + HN FD FI E R Sbjct: 63 RELYNAESINEVIGHIVEFCEDYD--LLGHNTVFDYSFIKREASRAGLVFDKKGLDT-YK 119 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + +L C+ +GI ++ H A D++ ++ K+M NF + Sbjct: 120 LCKKILPADIKKNLTDACRYFGIE--RKNPHRAFSDAYYTHLLFQKIMENFPDFNFSPEH 177 Query: 188 NEDRFFKEEKKTVPNISLLKR--------DKPLFTRITKEELDEHDKTIQT 230 E + K L++ K +++ E I++ Sbjct: 178 MEVKLKKFIPIRKRTKEDLQKLLNCHRIGYKVNIDLLSESEAKRMMDKIKS 228 >gi|318041263|ref|ZP_07973219.1| putative DNA polymerase III, epsilon subunit [Synechococcus sp. CB0101] Length = 304 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 14/222 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R ++ D ETTGLD + DR IE+GAV ++ + L P + D Sbjct: 74 RLLILDTETTGLDPQRDRCIELGAVLFDVPRRSVLSQVSLLLP----CEQNPAQAVNGID 129 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L +P ++++ + +AHNA FD + + + ++ + Sbjct: 130 PRLTQQPQPWQQGLQWFEALLAASDVVVAHNAAFDRQWFG--IAPLPAIDKPWLCSMEDI 187 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQINFGF 185 +H S + L Y + + H AL D L+ V+ + + Q Sbjct: 188 RWPADRHLRSNPSVRDLALAYSVPVWAA--HRALTDCIYLAQVFERCSDLEPLLQQGLEP 245 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP----LFTRITKEELDE 223 + E++ + + ++P R+++ E Sbjct: 246 RRLYRARLSYEERHKAREAGFRWNEPVSGAWSRRLSEREAAL 287 >gi|294339674|emb|CAZ88034.1| putative protein fusion of DNA polymerase III, epsilon subunit and Excinuclease ABC, C subunit [Thiomonas sp. 3As] Length = 469 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 4/100 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG + DRI E+ + + + + + P G++ P +L GI D Sbjct: 5 YVLLDLETTGSNPVLDRITEVAVMRVEQGEVVAK-WSRLVNP-GQRIPPFIQQLTGIDDA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 + P+F + E + A +AHN +FD GF+ Sbjct: 63 MVAGAPAFGEVLPELLAALDG--AVLVAHNVRFDHGFLKQ 100 >gi|288800251|ref|ZP_06405709.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299 str. F0039] gi|288332464|gb|EFC70944.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299 str. F0039] Length = 896 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 55/181 (30%), Gaps = 9/181 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFL---CP-----NGRKNSPEAL 60 +VFD ETTGL+ D I++I AV++ N F++F+ P +N Sbjct: 515 VVFDTETTGLNVLEDDIVQIAAVKIAKGKVLENERFEIFIDTKRPIPAMLGDIENPLIEE 574 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + F + ++ + + +D Sbjct: 575 IKKHTLHTPAEALARFMEYIDGAMLVGHNATYDYQILYNNLLRYLPQYTFLQKHSSYIDT 634 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ L + + + + ++ H + H ++ + G S+ Sbjct: 635 LKLTRLLQPSLKNYKLKNLLQEFQLEGQNTHLADADVHATVGLVHFCYQQSVEKLKGQSE 694 Query: 181 I 181 Sbjct: 695 F 695 >gi|227519479|ref|ZP_03949528.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX0104] gi|257084298|ref|ZP_05578659.1| exonuclease [Enterococcus faecalis Fly1] gi|257416905|ref|ZP_05593899.1| exonuclease [Enterococcus faecalis AR01/DG] gi|257421652|ref|ZP_05598642.1| exonuclease [Enterococcus faecalis X98] gi|307288644|ref|ZP_07568625.1| exonuclease [Enterococcus faecalis TX0109] gi|227073091|gb|EEI11054.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX0104] gi|256992328|gb|EEU79630.1| exonuclease [Enterococcus faecalis Fly1] gi|257158733|gb|EEU88693.1| exonuclease [Enterococcus faecalis ARO1/DG] gi|257163476|gb|EEU93436.1| exonuclease [Enterococcus faecalis X98] gi|306500398|gb|EFM69734.1| exonuclease [Enterococcus faecalis TX0109] gi|315155598|gb|EFT99614.1| exonuclease [Enterococcus faecalis TX0043] gi|315165305|gb|EFU09322.1| exonuclease [Enterococcus faecalis TX1302] Length = 188 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 7/167 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M FD ET I V++ + + F + P ++HGI Sbjct: 12 MNFYAFDFET--ASYDKHSACSIAIVKVENSRIVDE-FYTLIKPETPFF-WRNTQIHGIH 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + P F + + N +AHNA FD + L + + + Sbjct: 68 ESDVANAPKF-PEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 126 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + + LN++C+ IT + H AL DS +++ ++ Sbjct: 127 KTSRKLFPEFPNHKLNTVCENLNIT--LNNHHDALEDSRACAEILLQ 171 >gi|224825206|ref|ZP_03698312.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] gi|224602877|gb|EEG09054.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] Length = 212 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 8/203 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTGL R EI V L + R FQ + G + P+ +L GI+ Sbjct: 12 RVAVIDFETTGLSPGIGCRATEIAVVLLENGRVAGR-FQSLMN-AGVRVPPDIERLTGIS 69 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + LK P ++ E +F + +AHNA FD F + EL + + Sbjct: 70 NAMLKAAPPADAVMREAAEFVGD--TPLVAHNAAFDRKFWDYELGQFGRTRRQDFACTLL 127 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS-QINFGF 185 L+ + + L +L + G+ + ++ + + + Q Sbjct: 128 LARRLLPA-APNHKLGTLTRWAGLPATGQAHRALADAEMAAN-LMAHLTRVLRVQHGLDR 185 Query: 186 KTNEDRFFKEEKKTVPNISLLKR 208 +++ ++ L+R Sbjct: 186 VSHQLLCGLQKVAAKQVPEYLRR 208 >gi|218670823|ref|ZP_03520494.1| DNA polymerase III subunit epsilon [Rhizobium etli GR56] Length = 164 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEAL 60 ++ D ETTGL+ +ND IIEIGAV D ++ L R PE Sbjct: 65 VILDTETTGLNHRNDEIIEIGAVAFTFDDDRAIGDIVGIYGGLQQPSRPIPPEIT 119 >gi|295106393|emb|CBL03936.1| exonuclease, DNA polymerase III, epsilon subunit family [Gordonibacter pamelaeae 7-10-1-b] Length = 1031 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 4/113 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D ETTG +D + +I A + F F+ P G+ + L I D Sbjct: 46 NIVVVDTETTGFSFNHDELTQIAAARMEQGRIV-DWFITFVNP-GKPIPEDVAYLTDIHD 103 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 E + D P S SE +F + A+ +AHNA+FD F Sbjct: 104 EDVADAPLPSEALSELAEFVGD--AKIVAHNAEFDRTFTTRHPSGYPLLENTW 154 >gi|219669053|ref|YP_002459488.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium hafniense DCB-2] gi|219539313|gb|ACL21052.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium hafniense DCB-2] Length = 929 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 12/185 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI+ +V DIETTG D ND IIE A+ + + + F V + P R+ L Sbjct: 1 MIKGK---IVVIDIETTGFDIYNDEIIEFAALCIEEGEE-AEAFSVLISP-RRQVPERIL 55 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GI+ E LK S + + D F + A + HN +FD+GF+ L ++ L Sbjct: 56 RLTGISPEELKQAGSLQAYRDKILDLFQD--AIIVGHNVEFDLGFLEQALTIHFENTLWD 113 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + I + L L K G+T ++ H AL D+ ++ G Sbjct: 114 TLEIA----RILYPNMPKYKLGDLTKSLGLTPLEKA-HRALFDARAAWELLQACWEKGLT 168 Query: 181 INFGF 185 ++ GF Sbjct: 169 LDLGF 173 >gi|255037648|ref|YP_003088269.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM 18053] gi|254950404|gb|ACT95104.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM 18053] Length = 269 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 8/162 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG++ DRI+EI V+ L++ RT + P E+ +HGI DE Sbjct: 12 FFDLETTGVNIVRDRIVEISVVKALVNGETEIRT--RRINPE-MPIPLESSLIHGIYDED 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P+F S+ F + N + L+ + R++D I Sbjct: 69 VKDAPTFKSVAKNLASFLEGCDLAGFNSNRFDIPMLVEEFLRVGVDFDVKNRRMVDVQRI 128 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P S ++ + + H A D+ +V Sbjct: 129 YHMMEP----RNLSAAYKFYCGKTLNNAHSAEADTIATFEVL 166 >gi|322374172|ref|ZP_08048705.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C150] gi|321276877|gb|EFX53949.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C150] Length = 1464 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 44/193 (22%), Positives = 68/193 (35%), Gaps = 6/193 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + F F+ P A Sbjct: 426 YVVFDVETTGLSAVHNDLIQIAASKMHKGNII-EQFDEFIDPG---YPLSAFTTELTGIT 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 K + + Q +AHNA FDVGF+NA +R + I Sbjct: 482 DNHVKGAKPLLQVLQEFQVFCQGTVLVAHNATFDVGFMNANYERNQLPTISQPVIDTLEF 541 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 R+ L L KR+G+ H + + A LL + N Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALDHHHMANYDAEATGRLLFIFIKDVFDKHGLTNLEQL 601 Query: 187 TNEDRFFKEEKKT 199 E KK+ Sbjct: 602 NTELVSEDSYKKS 614 >gi|256818856|ref|YP_003140135.1| Exonuclease RNase T and DNA polymerase III [Capnocytophaga ochracea DSM 7271] gi|256580439|gb|ACU91574.1| Exonuclease RNase T and DNA polymerase III [Capnocytophaga ochracea DSM 7271] Length = 258 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 75/222 (33%), Gaps = 19/222 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG+D DRI+EI +++ + +K ++T+ + P A +HGITDE Sbjct: 11 FFDLETTGIDITKDRIVEISILKVYPNGNKESKTW--LVNP-TIPIPKAASDVHGITDER 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + +P+F + + + + + + L+ L +D +I Sbjct: 68 VAGEPTFKELAKQIHNMIKDSDLAGYNSDRFDIPLLAEEMLRAEVDFDLGNRVSVDVQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + S ++ H A D++ ++ + + K Sbjct: 128 FHK----MEQRTLSAAYKFYCGKDLIDAHTASADTNATYEILKAQLDRYDNLENNIKKLS 183 Query: 190 D-----------RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + F K + K I EE Sbjct: 184 EFTYRKQIADFAGFIGYNDKGEEIFTFGKHKGKRVEDIFDEE 225 >gi|139439869|ref|ZP_01773234.1| Hypothetical protein COLAER_02268 [Collinsella aerofaciens ATCC 25986] gi|133774797|gb|EBA38617.1| Hypothetical protein COLAER_02268 [Collinsella aerofaciens ATCC 25986] Length = 964 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 68/178 (38%), Gaps = 10/178 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D ETTGL +++ +IEI A L +R F F+ P + E +L IT+ Sbjct: 39 IVLDTETTGLSVQDNELIEISAARLSGREVVDR-FDTFVHPK-QLIPAEITELTSITNAD 96 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D PS + DF IAHNA FD FI + +N + + + Sbjct: 97 VADAPSAVEAVAALADFVGG--CPVIAHNATFDRSFIESVKGGVNVSDIWIDSLALSRIA 154 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 R + + L H A D L V+ ++V + + G Sbjct: 155 LPRLASHKLSFMADL------FGCDSVSHRANADVDALCGVWRVLLVALTDLPQGLMA 206 >gi|307717346|gb|ADN88726.1| DNA polymerase III [Listeria innocua] gi|307717356|gb|ADN88731.1| DNA polymerase III [Listeria innocua] gi|307717358|gb|ADN88732.1| DNA polymerase III [Listeria innocua] gi|307717360|gb|ADN88733.1| DNA polymerase III [Listeria innocua] gi|307717374|gb|ADN88740.1| DNA polymerase III [Listeria innocua] gi|307717388|gb|ADN88747.1| DNA polymerase III [Listeria innocua] Length = 231 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 6/194 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + +F + + +AHNA FD+GFIN +++ + + + Sbjct: 59 SDPIDVVLKQFRE--WSGDDILVAHNASFDMGFINTAYEKVGLEKAKNAVVDTLELARFL 116 Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192 + LN+L K++ I H A+ D+ + + K++ +++ + Sbjct: 117 YPHFKNHRLNTLTKKFN--IILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIEFHDSLND 174 Query: 193 FKEEKKTVPNISLL 206 + E Sbjct: 175 YMGEGDAYKRARPF 188 >gi|238782582|ref|ZP_04626613.1| Ribonuclease T [Yersinia bercovieri ATCC 43970] gi|238796368|ref|ZP_04639877.1| Ribonuclease T [Yersinia mollaretii ATCC 43969] gi|238716509|gb|EEQ08490.1| Ribonuclease T [Yersinia bercovieri ATCC 43970] gi|238719813|gb|EEQ11620.1| Ribonuclease T [Yersinia mollaretii ATCC 43969] Length = 226 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L + + T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAQTDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGLKDQGCNRAIIVAHNANFDHSFVMAAAERASLK 150 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D+ + ++ +++ Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCELVN 210 Query: 177 GGSQIN 182 ++ Sbjct: 211 RWKKLG 216 >gi|332202187|gb|EGJ16256.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA41317] Length = 1463 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 7/211 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185 R+ L L KR+G+ H + + A LL ++ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLDRL 600 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + +K + + ++ +++ I Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631 >gi|260060780|ref|YP_003193860.1| DNA polymerase III subunit alpha [Robiginitalea biformata HTCC2501] gi|88784910|gb|EAR16079.1| DNA polymerase III, alpha subunit [Robiginitalea biformata HTCC2501] Length = 1453 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 19/228 (8%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + D R I+I + + + P+G + Sbjct: 2 YLIFDTETTGLPKRWDAPASDTDNWPRCIQIAWQLHDGEGRLVEQYDALVRPDGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A ++HGI+ + +++ E + + + N FD+ + AE R+ + Sbjct: 62 AEQIHGISTDLAREEGLPLEEVLEAFRGALSRTQFLVGQNVGFDINVMGAEFYRVADEDP 121 Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + H A D + Sbjct: 122 LEKFPVLDTCTESTAELCQLPGGRGGKFKLPTLTELHLHLFGEPFEEAHNATADVEATAR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 +++++ F ++ I+ + + + Sbjct: 182 CFLELLRRRQYSPEQLGVAPGYFEAFDRANPGTIAPIGIAHKNLKKAS 229 >gi|149020300|ref|ZP_01835192.1| hypothetical protein CGSSp23BS72_05994 [Streptococcus pneumoniae SP23-BS72] gi|147930602|gb|EDK81584.1| hypothetical protein CGSSp23BS72_05994 [Streptococcus pneumoniae SP23-BS72] Length = 308 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 9/175 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D+ET +S + IG V+ +D + +F + P K S +K+H I E Sbjct: 5 FIALDVET--ANSFRGSLCSIGLVKFIDGQEV-DSFYTLINPE-EKFSSRNIKIHAIKPE 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+F + E +F N +AHNA+FD + + + Sbjct: 61 DVIGAPTFPEVQKEIINFI--DNLPIVAHNARFDAYALQDVYLKYEIPFDNIQYFCSYQV 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L++L + + H AL D+ + ++++ Q + Sbjct: 119 CKIILTDLPNHKLHTLAEHF---KISLDHHNALSDARACGLILLEILKLSKQTSI 170 >gi|325912570|ref|ZP_08174953.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 60-B] gi|325477991|gb|EGC81120.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 60-B] Length = 241 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + N ++ ++ Sbjct: 69 QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175 IA PS + + HR+ AL+ + +L + I+M+ Sbjct: 129 QIAFPTIPSYKLQDITSTLHIKHANPHRADSDALVTAKMLLKIIDKIEML 178 >gi|219849043|ref|YP_002463476.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM 9485] gi|219543302|gb|ACL25040.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM 9485] Length = 934 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL S D IIE+ AV +R F+ + P + + +L GI Sbjct: 6 YVAIDVETTGLQSGLDEIIEVAAVTFRGRDILDR-FERLVRP-RQSVPLKITRLTGIDPA 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE 93 L P F+ I ++ F + Sbjct: 64 ALAQAPRFNEIGADLARFIGNRPIV 88 >gi|309805626|ref|ZP_07699668.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 09V1-c] gi|308165064|gb|EFO67305.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 09V1-c] Length = 225 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 72/217 (33%), Gaps = 10/217 (4%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + N ++ ++ Sbjct: 69 QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKM-----MVGGSQ 180 IA PS + + HR+ AL+ + +L + I+M + + Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIEKIEMLPTATLNSLTS 188 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 ++ G N F + + + +I+ Sbjct: 189 MSRGLLRNTYYIFSQVSTYARQEKRPLNNDLIQIKIS 225 >gi|302773125|ref|XP_002969980.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii] gi|300162491|gb|EFJ29104.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii] Length = 1208 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I KM IVFD+ETTG + DRIIE A +L ++ T + P GR Sbjct: 170 IPAPKMTIIVFDLETTGFRAAGDRIIEFAARDLAGGDRS--TISALVNP-GRTVPYLITA 226 Query: 62 LHGITDEFLKDKP 74 + GIT++ + Sbjct: 227 VTGITNQMVNKPH 239 >gi|302799380|ref|XP_002981449.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii] gi|300150989|gb|EFJ17637.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii] Length = 1254 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I KM IVFD+ETTG + DRIIE A +L ++ T + P GR Sbjct: 170 IPAPKMTIIVFDLETTGFRAAGDRIIEFAARDLAGGDRS--TISALVNP-GRTVPYLITA 226 Query: 62 LHGITDEFLKDKP 74 + GIT++ + Sbjct: 227 VTGITNQMVNKPH 239 >gi|15829146|ref|NP_326506.1| DNA polymerase III PolC [Mycoplasma pulmonis UAB CTIP] gi|14424449|sp|P47729|DPO3_MYCPU RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|14090090|emb|CAC13848.1| DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII) [Mycoplasma pulmonis] Length = 1435 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 4/188 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V+DIETTGL + +I+ GA + + T F+ P + +S Sbjct: 404 YVVYDIETTGLSPMLNELIQFGASVIKNGRII-ETHHFFIKPKSKLDS---FTTKLTGIT 459 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + + +AHNA FD F+ + N + + I Sbjct: 460 QEHLEKGYELQEALEKISSIFKARIMVAHNAAFDHNFLKQKFIDNNIEFEEMISIDTLNL 519 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L + + + H A DS +L++++I M + Sbjct: 520 AKVLNPIYRSYRLGEVASKLSVVYDPSIAHRADYDSSVLTNIFILQMSHLKEKGINLFKE 579 Query: 189 EDRFFKEE 196 + E+ Sbjct: 580 LNSLSSEK 587 >gi|487436|gb|AAA18178.1| DNA polymerase III [Mycoplasma pulmonis] gi|1090178|prf||2018296A DNA polymerase III Length = 1435 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 4/188 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V+DIETTGL + +I+ GA + + T F+ P + +S Sbjct: 404 YVVYDIETTGLSPMLNELIQFGASVIKNGRII-ETHHFFIKPKSKLDS---FTTKLTGIT 459 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + + +AHNA FD F+ + N + + I Sbjct: 460 QEHLEKGYELQEALEKISSIFKARIMVAHNAAFDHNFLKQKFIDNNIEFEEMISIDTLNL 519 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L + + + H A DS +L++++I M + Sbjct: 520 AKVLNPIYRSYRLGEVASKLSVVYDPSIAHRADYDSSVLTNIFILQMSHLKEKGINLFKE 579 Query: 189 EDRFFKEE 196 + E+ Sbjct: 580 LNSLSSEK 587 >gi|312978151|ref|ZP_07789895.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus CTV-05] gi|310894869|gb|EFQ43939.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus CTV-05] Length = 926 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 7/169 (4%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + II+ G + + +T+ + P+ R+ + L GI D Sbjct: 10 FAVVDLETTGTQRENGHHIIQFGCAIIKNRKVV-KTYSFLINPH-REIPQSVVNLTGIHD 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + F + QN ++AHN FD+ F+N EL + + L I Sbjct: 68 QDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEALTNKAIDTVE 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKM 174 L+ L + GI H++ A + LL +++ K+ Sbjct: 126 LAKIAFPTFPSYKLSDLTTQLGIKHLDPHKADSDAYGTAVLLLEIFNKL 174 >gi|148986116|ref|ZP_01819102.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP3-BS71] gi|149004079|ref|ZP_01828884.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69] gi|147757891|gb|EDK64900.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69] gi|147921830|gb|EDK72957.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP3-BS71] gi|301799167|emb|CBW31680.1| unnamed protein product [Streptococcus pneumoniae OXC141] Length = 307 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 73/215 (33%), Gaps = 6/215 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ET + + IG V+ D + TF + P + + +HGIT E Sbjct: 5 YVALDVET--ANDFRGSVCSIGLVKFKDGNIV-DTFYTLINPE-EEFDDFNIFIHGITPE 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + DF +AH A+FD+G + Q+ D + I Sbjct: 61 DVLDSPTFPEVRKSIVDFIGL--DIVVAHFAQFDMGALKDVYQKYELDFDNIEYICSYRL 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L L K I + H + S L+ + + F + Sbjct: 119 AKVALPGQLNYKLKRLAKNLNIELDHHNALSDARASGLILEYLLSTNSFSDLTAFLKEYR 178 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 ++ + + + L + T+EE Sbjct: 179 YNKTGLLGQYGFKRKKGYQYKENLIYQPTEEEKAA 213 >gi|325686582|gb|EGD28608.1| DNA polymerase III PolC [Streptococcus sanguinis SK72] Length = 1462 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 84/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 +++ + EF +F + + +AHNA FDVGF+N +R N + ++ Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHNLPKITQPVIDTLEF 539 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 ++ + + + H + + A LL + N Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T+ +K V + ++ +++ Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624 >gi|320539160|ref|ZP_08038831.1| ribonuclease T (RNase T) [Serratia symbiotica str. Tucson] gi|320030798|gb|EFW12806.1| ribonuclease T (RNase T) [Serratia symbiotica str. Tucson] Length = 248 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV ++ + + + T + P G PEAL +G Sbjct: 52 VVIDVETAGFNAKTDALLEIAAVTLKMDEGGWLQQDETLHFHVEPFEGANLQPEALAFNG 111 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + A +AHNA FD F+ A +R + Sbjct: 112 IDPHNPLRGAVSEYDALHAIFKTVRAGIKHRGCNRAIIVAHNANFDHSFLMAAAERASLK 171 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C G+ H AL D+ + ++ +++ Sbjct: 172 RNPFHPFATFDTAALSGLVLGQTVLAKACTAAGMPFDSSQAHSALYDTEQTALLFCELVN 231 Query: 177 GGSQIN 182 ++ Sbjct: 232 RWKRLG 237 >gi|262194253|ref|YP_003265462.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077600|gb|ACY13569.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 4/117 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNG-RKNSPEALKLHGITD 67 + D ETTGLD + I+EI A+ + + + RT + + P PEAL+++G Sbjct: 5 VFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERTLVLRVRPERLEDADPEALEVNGYHQ 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 D S +E A HN FD F+ A + P + Sbjct: 65 RVWVDAVSLDEALAELAPMLEG--AVLAGHNVAFDRRFLEAAWDYVGHRPENLDHHA 119 >gi|209519136|ref|ZP_03267941.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] gi|209500436|gb|EEA00487.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] Length = 382 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 7/103 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + RI E+G VE+ T T + + P + +L GIT++ Sbjct: 16 VFVDLETTGGSTSEHRITEVGVVEV---GPTGVTRWSSLIDPQ-QPIPSFIQQLTGITND 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 + P+F SI ++ N ++AHNA FD GF+ +E + Sbjct: 72 MVHGAPTFESIAPALYERLNG--KLFVAHNASFDRGFLRSEFR 112 >gi|160874893|ref|YP_001554209.1| ribonuclease T [Shewanella baltica OS195] gi|160860415|gb|ABX48949.1| ribonuclease T [Shewanella baltica OS195] gi|315267130|gb|ADT93983.1| ribonuclease T [Shewanella baltica OS678] Length = 223 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSKTN--RTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S+ D ++EI +++ + +T + P G PEAL +G Sbjct: 20 VVIDVETAGFNSQTDALLEIAVTLLKMDNEGVIGIDKTLHFHIEPFEGANLEPEALAFNG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + +AHNA FD GF++ ++R + Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L C GI ++ H AL D+ ++++ ++ Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCHIVN 199 Query: 177 GGSQIN 182 + Sbjct: 200 RWKSLG 205 >gi|153000260|ref|YP_001365941.1| ribonuclease T [Shewanella baltica OS185] gi|304409837|ref|ZP_07391457.1| ribonuclease T [Shewanella baltica OS183] gi|307304193|ref|ZP_07583946.1| ribonuclease T [Shewanella baltica BA175] gi|166200019|sp|A6WM39|RNT_SHEB8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|151364878|gb|ABS07878.1| ribonuclease T [Shewanella baltica OS185] gi|304352355|gb|EFM16753.1| ribonuclease T [Shewanella baltica OS183] gi|306913091|gb|EFN43514.1| ribonuclease T [Shewanella baltica BA175] Length = 223 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSKTN--RTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S+ D ++EI +++ + +T + P G PEAL +G Sbjct: 20 VVIDVETAGFNSQTDALLEIAVTLLKMDNEGVIGIDKTLHFHIEPFEGANLEPEALAFNG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + +AHNA FD GF++ ++R + Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L C GI ++ H AL D+ ++++ ++ Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCHIVN 199 Query: 177 GGSQIN 182 + Sbjct: 200 RWKSLG 205 >gi|126173968|ref|YP_001050117.1| ribonuclease T [Shewanella baltica OS155] gi|217973711|ref|YP_002358462.1| ribonuclease T [Shewanella baltica OS223] gi|166200018|sp|A3D3D5|RNT_SHEB5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|125997173|gb|ABN61248.1| RNAse T [Shewanella baltica OS155] gi|217498846|gb|ACK47039.1| ribonuclease T [Shewanella baltica OS223] Length = 223 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSKTN--RTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S+ D ++EI +++ + +T + P G PEAL +G Sbjct: 20 VVIDVETAGFNSQTDALLEIAVTLLKMDNEGVIGIDKTLHFHIEPFEGANLEPEALAFNG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + +AHNA FD GF++ ++R + Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L C GI ++ H AL D+ ++++ ++ Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCHIVN 199 Query: 177 GGSQIN 182 + Sbjct: 200 RWKSLG 205 >gi|149371249|ref|ZP_01890735.1| DNA Pol III Epsilon Chain [unidentified eubacterium SCB49] gi|149355387|gb|EDM43946.1| DNA Pol III Epsilon Chain [unidentified eubacterium SCB49] Length = 257 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD+ETTG++ DRI+EI +++ +F + P +HGITDE + Sbjct: 11 FFDLETTGINIAKDRIVEIAILKVFPNGN-KESFVWKVNP-TIPIPKVTSDIHGITDEMV 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK 100 ++P+F + + + + + N Sbjct: 69 VNEPTFKELAPKVFALIKDSDLAGFNSNRF 98 >gi|315634736|ref|ZP_07890020.1| ribonuclease T [Aggregatibacter segnis ATCC 33393] gi|315476684|gb|EFU67432.1| ribonuclease T [Aggregatibacter segnis ATCC 33393] Length = 217 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 72/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET GL++K D ++E+ A+ L ++ + P G PE++K +G Sbjct: 23 VVIDVETAGLNAKTDALLELAAITLKMDDAGNLVPDQKCHFHIHPFEGANIDPESIKFNG 82 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + Q + +AHNA FD GF+ A QR+N Sbjct: 83 IDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNASFDHGFVMAAAQRMNAK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I + H AL D+ ++++ M+ Sbjct: 143 RNPFHPFSTFDTATLSGFMFGQTVLVKACQAAKIPFDSQQAHSALYDTERTAELFCYMVN 202 Query: 177 GGSQIN 182 + Sbjct: 203 HLKHLG 208 >gi|260063099|ref|YP_003196179.1| hypothetical protein RB2501_15959 [Robiginitalea biformata HTCC2501] gi|88784668|gb|EAR15838.1| hypothetical protein RB2501_15959 [Robiginitalea biformata HTCC2501] Length = 375 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 7/169 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V DIETTG + I EI + TF + P R P KL GI Sbjct: 1 MTYAVLDIETTGGKFDEEGITEIAIHRFDGHEVV-DTFISLINPE-RPIQPYVQKLTGID 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ P F + + +++ +AHNA+FD + E +R+ + + Sbjct: 59 PKMVQTAPRFHQVAKRIVE--ITRDSVLVAHNAQFDYRILRTEFRRLGYNFERKTLCTVD 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 LS + + I ++H A D+ + ++ Sbjct: 117 LSQRLI---PDAESHSLGKLVRSLGIPVSNRHRANGDALATLKLLQHLL 162 >gi|309803980|ref|ZP_07698062.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus iners LactinV 11V1-d] gi|308163899|gb|EFO66164.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus iners LactinV 11V1-d] Length = 933 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + N ++ ++ Sbjct: 69 QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFDGKAIDTVELA 128 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175 IA PS + + HR+ AL+ + +L + I+M+ Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIDKIEML 178 >gi|149183101|ref|ZP_01861552.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. SG-1] gi|148849178|gb|EDL63377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. SG-1] Length = 933 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 5/101 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + +V D+ETTG K D+II++ A+ + + ++ F+ P G +L GI Sbjct: 5 KIVVVDLETTGNSPKKGDKIIQLAAMVVQGGAVV-DSYTTFVNP-GITIPSFIEELTGIH 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 D +KD P FS I + + + A + AHN +FD+GF+ Sbjct: 63 DGMVKDAPEFSEIAPKVLELLDG--AVFCAHNVQFDLGFLQ 101 >gi|146292700|ref|YP_001183124.1| ribonuclease T [Shewanella putrefaciens CN-32] gi|166200020|sp|A4Y5U2|RNT_SHEPC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|145564390|gb|ABP75325.1| RNAse T [Shewanella putrefaciens CN-32] Length = 224 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S+ D ++EI +++ D ++T + P G P AL +G Sbjct: 20 VVIDVETAGFNSQTDALLEIAVTLLKMDDEGMLGIDKTLHFHIEPFEGANLEPAALAFNG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + +AHNA FD GF++ ++R + Sbjct: 80 IDPNNPLRGAVSEKEAFLDIFKAVKKAQKAADCHRCIIVAHNAAFDHGFVSKAIERCDLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L C GI ++ H AL D+ ++++ ++ Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACMMAGIPFDNKEAHSALYDTERTAELFCYIVN 199 Query: 177 GGSQIN 182 Q+ Sbjct: 200 RWKQLG 205 >gi|258648468|ref|ZP_05735937.1| exonuclease [Prevotella tannerae ATCC 51259] gi|260851225|gb|EEX71094.1| exonuclease [Prevotella tannerae ATCC 51259] Length = 256 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 73/182 (40%), Gaps = 9/182 (4%) Query: 1 MIRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPE 58 M + N R I+F DIE TGL DRI+E+ +++ D + ++T + P S E Sbjct: 1 MTQLNLTRPIIFFDIEATGLQIARDRIVELSYIKVFPDGREESKTLRF--NPEMH-ISAE 57 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A ++GI DE + D P+F E F + N + + + + Sbjct: 58 ATAVNGIKDEDVADCPTFKEKSGELTAIFQSCDLAGFNSNVFDVPMLVEEFARAGSDFDI 117 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 S+++D +I + P + ++ + H A+ D+ +V + Sbjct: 118 TKSKLVDVQTIYHKLEPRNLIA----AYKFYCNKDLHNAHTAMADTQATYEVLKAQLDKY 173 Query: 179 SQ 180 + Sbjct: 174 GK 175 >gi|257090922|ref|ZP_05585283.1| exonuclease [Enterococcus faecalis CH188] gi|312902561|ref|ZP_07761767.1| exonuclease [Enterococcus faecalis TX0635] gi|256999734|gb|EEU86254.1| exonuclease [Enterococcus faecalis CH188] gi|310634231|gb|EFQ17514.1| exonuclease [Enterococcus faecalis TX0635] gi|315168719|gb|EFU12736.1| exonuclease [Enterococcus faecalis TX1341] gi|315579629|gb|EFU91820.1| exonuclease [Enterococcus faecalis TX0630] Length = 188 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 7/167 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M FD ET I V++ + + F + P ++HGI Sbjct: 12 MNFYAFDFET--ASYDKHSACSIAIVKVENSQIVDE-FYTLIKPETPFF-WRNTQIHGIH 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + P F + + N +AHNA FD + L + + + Sbjct: 68 ESDVVNAPKF-PEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 126 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + + LN++C+ IT + H AL DS +++ ++ Sbjct: 127 KTSRKLFPEFPNHKLNTVCENLNIT--LNNHHDALEDSRACAEILLQ 171 >gi|157736764|ref|YP_001489447.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018] gi|315635941|ref|ZP_07891202.1| exonuclease [Arcobacter butzleri JV22] gi|157698618|gb|ABV66778.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018] gi|315479725|gb|EFU70397.1| exonuclease [Arcobacter butzleri JV22] Length = 203 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 7/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+ K D I+ IGAV + + +TF +FL P + + E++K+H + Sbjct: 31 YVSLDCETTGLNPKKDEILSIGAVLIKDNKILMRKTFNIFLKP-SKDINIESIKVHHLRQ 89 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L D + DF + + +FD+ I+ ++ L + I + Sbjct: 90 IDLNDALEPEIGIYQLLDFIGS--RPIVGYYIEFDMAIISKYTKKYLGIKLPNTPIEVSS 147 Query: 128 SIARRKHPSSRNDLNSL---CKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +S L + I KH AL D+ + S +++K+ +Q Sbjct: 148 IYYDSRKSTSNYGFIDLKFDTIMKNLNIPVLGKHDALNDAIMTSMIFLKLKQFINQ 203 >gi|209546045|ref|YP_002277935.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538902|gb|ACI58835.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 326 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 63/187 (33%), Gaps = 15/187 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 ++ D ETTGL+ ++D IIEIGAV D ++ L R E +L GI Sbjct: 75 VILDTETTGLNHRSDEIIEIGAVAFTFDDDGGIGDIVGIYGGLQQPSRPIPAEITRLTGI 134 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD ++ + I E IAHNA FD F A Sbjct: 135 TDAMVEGQ----VIDMWSLSALIEPADLIIAHNAGFDRPFCEAFSTIFAGKAW------- 183 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 S++ + + L G H A+ D H L ++ + G Sbjct: 184 ACSVSEIDWSARGFEGTKLGYLVGQAGYFHDGHRAVDDCHALLEILDREQGDGESPFAEL 243 Query: 186 KTNEDRF 192 R Sbjct: 244 YRASQRS 250 >gi|168490120|ref|ZP_02714319.1| exonuclease family protein [Streptococcus pneumoniae SP195] gi|183571500|gb|EDT92028.1| exonuclease family protein [Streptococcus pneumoniae SP195] Length = 307 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 74/215 (34%), Gaps = 6/215 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ET + + IG V+ D + +F + P + + +HGIT E Sbjct: 5 YVALDVET--ANDFRGSVCSIGLVKFKDGNIV-DSFYTLINPE-EEFDDFNIFIHGITPE 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + DF +AH A+FD+G + Q+ D + I Sbjct: 61 DVLDSPTFPEVRKAIVDFIGS--DIVVAHFAQFDMGALKDVYQKYELDFDNIEYICSYRL 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L L K I + H + S L+ + + F + + Sbjct: 119 AKVALPGQLNYKLKRLAKNLNIELDHHNALSDARASGLILEYLLSTNSFSDLNAFLKEYS 178 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 ++ + + + L + T+EE Sbjct: 179 YNKTGLLGQYGFKRKKSYQYKENLIYQPTEEEKAA 213 >gi|212551002|ref|YP_002309319.1| DNA polymerase III epsilon subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549240|dbj|BAG83908.1| DNA polymerase III epsilon subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 258 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 82/215 (38%), Gaps = 11/215 (5%) Query: 2 IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 ++ N R IVF D+ETTG + +DRI+EI ++++ + K +T + P EA Sbjct: 1 MKLNLKRPIVFFDLETTGTNIISDRIVEISYLKVMPNDEKEIKT--RRINPE-IPIPKEA 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGIT+E +K+ F +I + N L+ Sbjct: 58 SDIHGITNEDVKNALPFKAIAKLLASQIEGCDLAGYNSNRFDIPILAEEFLRAGIDVDWT 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + +D +I +K P + ++ + H A D+ +V + Sbjct: 118 KQKFVDVQTIFHKKEPRTLLA----ALKFYCNRDLENAHSAAEDAKATYEVLKAQLDKYP 173 Query: 180 --QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 Q + F +N F K+ I ++ + L Sbjct: 174 DLQNDIIFLSNYSSFNKKNVDFAGRIVYNEKKQEL 208 >gi|167462368|ref|ZP_02327457.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae subsp. larvae BRL-230010] Length = 203 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Query: 7 MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 MR+I VFD+ETTGLD D+I EI A+ + R Sbjct: 1 MREIYTVFDLETTGLDPTKDQITEIAAIRTDLIREYGR 38 >gi|256847331|ref|ZP_05552777.1| helicase [Lactobacillus coleohominis 101-4-CHN] gi|256715995|gb|EEU30970.1| helicase [Lactobacillus coleohominis 101-4-CHN] Length = 950 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 61/207 (29%), Gaps = 4/207 (1%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG K DRII++G V + D F+ + P K +L GITD+ Sbjct: 18 VVDLETTGTSVKSGDRIIQVGLVMIQDGKII-NQFETRINP-LMKIPRSVQQLTGITDKD 75 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P I + N F + + + I Sbjct: 76 VSKAPLLEDIAPTLESLLSGTIFVAHNVNFDFPFINHELTRVGRDPLRISAIDTVTLSQI 135 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 S R + H + A LL D+ + + + Sbjct: 136 LMPTAKSYRLRDLTSYLHIEHDHPHSAVSDAEATGVLLKDL-LAKLRALPTVTLQTLVKM 194 Query: 190 DRFFKEEKKTVPNISLLKRDKPLFTRI 216 + + + L +R++ Sbjct: 195 EMQLPFQTANLFQRELDERNQHPLPLA 221 >gi|186475443|ref|YP_001856913.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815] gi|184191902|gb|ACC69867.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815] Length = 392 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 8/165 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + RI E+G VE+ + ++ + P G+ P +L GIT++ Sbjct: 16 VFVDLETTGGSVGDHRITEVGVVEVGPNGVS--SWTTLVDP-GQPIPPFIQQLTGITNDM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F +I ++ + + +IAHNA FD GF+ + ++ T+ + Sbjct: 73 VRGAPTFEAIAADLFARLDG--KLFIAHNASFDRGFLR--SEFQRAGFAFNPDVLCTVRL 128 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P+ + +H AL D+ LL + ++ Sbjct: 129 SRALFPAEKRHGLDALVERHAL-MPSDRHRALADADLLWQFWQRL 172 >gi|146311450|ref|YP_001176524.1| ribonuclease T [Enterobacter sp. 638] gi|166991090|sp|A4W9U3|RNT_ENT38 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|145318326|gb|ABP60473.1| RNAse T [Enterobacter sp. 638] Length = 224 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L T + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLTPDTTLHFHVDPFEGANLQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + N A +AHNA FD F+ A +R + Sbjct: 80 IDPHNPLRGAVSEYDALHAIYKMVRKGMKDSNCNRAIMVAHNATFDHSFMMAASERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C GI H AL D+ ++++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACITAGIDFDGNQAHSALYDTERTAELFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|251777997|ref|ZP_04820917.1| putative exonuclease [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082312|gb|EES48202.1| putative exonuclease [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 974 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 65/168 (38%), Gaps = 10/168 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 I DIETTGLD N IIEIGAV++ + S T T++V + P G G+ + Sbjct: 10 NVIYLDIETTGLDENNCEIIEIGAVKIKNLSVT--TYEVLIRPKGNVPVSIYKLCQGLKE 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L + I E ++ I HN F+ F++ + I D++ Sbjct: 68 EELMNSRHLEDIKKEL--LVFLEDLPLICHNGGFERKFLSYHIPEIKNQIF------DSM 119 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ P + + + H L DS V ++ Sbjct: 120 ELSAILEPWRKEYNLDSLIKSITILDKDEFHRGLEDSIDTLKVVNSLL 167 >gi|255974861|ref|ZP_05425447.1| exonuclease [Enterococcus faecalis T2] gi|256763360|ref|ZP_05503940.1| exonuclease [Enterococcus faecalis T3] gi|255967733|gb|EET98355.1| exonuclease [Enterococcus faecalis T2] gi|256684611|gb|EEU24306.1| exonuclease [Enterococcus faecalis T3] Length = 183 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 7/167 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M FD ET I V++ + + F + P ++HGI Sbjct: 7 MNFYAFDFET--ASYDKHSACSIAIVKVENSRIVDE-FYTLIKPETPFF-WRNTQIHGIH 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + P F + + N +AHNA FD + L + + + Sbjct: 63 ESDVVNAPKF-PEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + + LN++C+ IT + H AL DS +++ ++ Sbjct: 122 KTSRKLFPEFPNHKLNTVCENLNIT--LNNHHDALEDSRACAEILLQ 166 >gi|308807965|ref|XP_003081293.1| DNA helicase RecG (ISS) [Ostreococcus tauri] gi|116059755|emb|CAL55462.1| DNA helicase RecG (ISS) [Ostreococcus tauri] Length = 1259 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 46/200 (23%), Positives = 63/200 (31%), Gaps = 18/200 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--D 67 IVFD+ETTGL + RIIE+ A L D + F + P P L GIT Sbjct: 196 IVFDLETTGLSKEKSRIIELAAQSLTD---PSAAFSTLVNPGRFNIPPAIKALTGITNSM 252 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNA-------EWIAHNAKFDVGFINAELQRINKDPLDP 120 D PSF+ +F F + +AHNA+ R L Sbjct: 253 VSAPDVPSFAMAAEQFEMFIEQVRQSRPGAPVLLVAHNARQFDAAFIQYEYRRLGRELPS 312 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR------SKHGALLDSHLLSDVYIKM 174 S R+ H A D+ +L+D+ KM Sbjct: 313 SWRFCDTLPLARQLLRPDGLGKFSMDVLRGHYDIELEGGDVQMHRAGTDARVLADILNKM 372 Query: 175 MVGGSQINFGFKTNEDRFFK 194 + + E F Sbjct: 373 LEHPRAKGNELRCLEQFSFS 392 >gi|148379300|ref|YP_001253841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. ATCC 3502] gi|153931399|ref|YP_001383675.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. ATCC 19397] gi|153936519|ref|YP_001387223.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. Hall] gi|148288784|emb|CAL82868.1| putative DNA helicase [Clostridium botulinum A str. ATCC 3502] gi|152927443|gb|ABS32943.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. ATCC 19397] gi|152932433|gb|ABS37932.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. Hall] Length = 855 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 4/176 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+E+TG+++ D I++I +++ + + +FQ FL P + Sbjct: 494 NVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLTPKKFVGDSYLVH-GFSDQ 552 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ + + +F +F + + HN FD+ +N+EL+R++ + DTL Sbjct: 553 FLKENGENKKVVLKDFLEFIKD--TVIVGHNVAFDISILNSELERLSLEKASFKTYYDTL 610 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IARR +P+ N + +S H A+ D DV + M+ + Sbjct: 611 DIARRFYPNLTNHKLETLSKL-FNTETKSSHDAMDDILATKDVLMAMLKEKVKPTI 665 >gi|86360676|ref|YP_472564.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42] gi|86284778|gb|ABC93837.1| probable polymerase epsilon subunit protein [Rhizobium etli CFN 42] Length = 326 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 65/180 (36%), Gaps = 15/180 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 ++ D ETTGL+ ++D IIEIGAV D ++ L R P+ +L GI Sbjct: 75 VILDTETTGLNHRSDEIIEIGAVAFTFNDDGAVGDVVGIYGGLQQPSRPIPPDITRLTGI 134 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD ++ + +I + E IAHNA FD F A Sbjct: 135 TDVMVEGQ----TIDMPSLNALIEPADLIIAHNAGFDRPFCEAFSPIFAGKAW------- 183 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 S++ + + L G H A+ D H L ++ + G Sbjct: 184 ACSVSEIDWSARGFEGTKLGYLVGQAGYFHGGHRAVDDCHALLEILDRQQGDGESPFAEL 243 >gi|332877643|ref|ZP_08445386.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684392|gb|EGJ57246.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 258 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 69/181 (38%), Gaps = 8/181 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG+D DRI+EI +++ + +K ++T+ + P A +HGITDE Sbjct: 11 FFDLETTGIDITKDRIVEISILKVYPNGNKESKTW--LVNP-TIPIPAMASAVHGITDEK 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P+F + + + + + + L+ L +D +I Sbjct: 68 VANEPTFKELAKQIHNMIKDSDLAGYNSDRFDIPLLAEEMLRAGVDFDLGNRVTVDIQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + S ++ H A D++ ++ + + K Sbjct: 128 FHK----MEQRTLSAAYKFYCGKDLLEAHTAAADTNATYEILKAQLDKYDNLENNIKKLS 183 Query: 190 D 190 + Sbjct: 184 E 184 >gi|289167137|ref|YP_003445404.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6] gi|288906702|emb|CBJ21536.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6] Length = 1463 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNIVAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185 R+ L L KR+G+ H + + A LL ++ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + +K + + ++ +++ I Sbjct: 601 NVDLISPDSYKKARIKHATIYVKNQVGLKNI 631 >gi|330444105|ref|YP_004377091.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58] gi|328807215|gb|AEB41388.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58] Length = 249 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D E TGLD K DRIIEI V + + + P ++ S E+ ++H I++ Sbjct: 9 FVCLDCEMTGLDVKKDRIIEIAIVRFTFERIL-DSIEFLINPE-KEVSIESQRIHHISNA 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97 LK++P F++++ + F + + Sbjct: 67 MLKNQPKFAAVYPKIKAFLKDDDNIVGHS 95 >gi|325912075|ref|ZP_08174473.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus iners UPII 143-D] gi|325476025|gb|EGC79193.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus iners UPII 143-D] Length = 933 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + N ++ ++ Sbjct: 69 QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175 IA PS + + HR+ AL+ + +L + I+M+ Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIDKIEML 178 >gi|288922213|ref|ZP_06416412.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f] gi|288346447|gb|EFC80777.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f] Length = 565 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 4/114 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG I EIGAV++ + P L GITD Sbjct: 29 FVVVDLETTGGSPATSEITEIGAVKVRGGQVLGEM-SSLVR-ASTPIPPVVSVLTGITDS 86 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 L P+ + F + + A +AHNA FD+GF+ A Q Sbjct: 87 MLATAPTLDEVVPTFLE--FSRGAVLVAHNAAFDLGFLRAAAQACGYPVPAWEH 138 >gi|120599226|ref|YP_963800.1| ribonuclease T [Shewanella sp. W3-18-1] gi|166200022|sp|A1RKQ1|RNT_SHESW RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|120559319|gb|ABM25246.1| RNAse T [Shewanella sp. W3-18-1] gi|319426004|gb|ADV54078.1| ribonuclease T [Shewanella putrefaciens 200] Length = 223 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S+ D ++EI +++ D ++T + P G P AL +G Sbjct: 20 VVIDVETAGFNSQTDALLEIAVTLLKMDDEGMLGIDKTLHFHIEPFEGANLEPAALAFNG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + +AHNA FD GF++ ++R + Sbjct: 80 IDPNNPLRGAVSEKEAFLDIFKAVKKAQKAADCHRCIIVAHNAAFDHGFVSKAIERCDLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L C GI ++ H AL D+ ++++ ++ Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACMMAGIPFDNKEAHSALYDTERTAELFCYIVN 199 Query: 177 GGSQIN 182 Q+ Sbjct: 200 RWKQLG 205 >gi|315925789|ref|ZP_07921996.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263] gi|315620898|gb|EFV00872.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263] Length = 158 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 2/40 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 +V D+ET GLD+ +RIIEIGAV++ T TF+ + Sbjct: 48 YVVIDLETDGLDAAKNRIIEIGAVKVDGQ--TVSTFEQLI 85 >gi|291557306|emb|CBL34423.1| CRISPR-associated protein Cas2, E. coli subfamily [Eubacterium siraeum V10Sc8a] Length = 268 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 5/164 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTGL+ D IIE+GAV + + T+ V + +K ++L GIT+E L Sbjct: 107 VIDIETTGLNPD-DEIIELGAVTVENG-SVAETYSVLVK-TDKKIPEAIIRLTGITEELL 163 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + + S + + HN FD+ FI + D PS+IIDT+ I+ Sbjct: 164 ASEGTDKSKALSEFAM-RCNGKPLVGHNIGFDLNFIKSACAENKID-FVPSKIIDTVKIS 221 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R+ + L ++ + + + H AL D L +Y K+ Sbjct: 222 RKLLDINSYSLAAIADYFDLHYNKDRIHRALDDCLLTQRIYEKL 265 >gi|315604561|ref|ZP_07879624.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310] gi|315313573|gb|EFU61627.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310] Length = 525 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 4/166 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGL ++ I EIGAV + + F + P G Sbjct: 10 WVVVDLETTGLGAR-AEITEIGAVRVREGRLC-EEFSSLVRPVGPIPPAITALTGITPAM 67 Query: 69 FLKDKPSFSSIFSEFWD--FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 P + + F + +AHNA FD+GF+ + + Sbjct: 68 VRGADPIATVLDRFLTWAGFEAKDPVVLVAHNAPFDIGFLRRAAAACSLPWPRVRVVDTL 127 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + H AL D+ ++V + Sbjct: 128 ALARLALPRPIVRNHKLATVASYFGTATVPGHRALGDARATAEVLL 173 >gi|188589009|ref|YP_001921284.1| putative exonuclease [Clostridium botulinum E3 str. Alaska E43] gi|188499290|gb|ACD52426.1| putative exonuclease [Clostridium botulinum E3 str. Alaska E43] Length = 974 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 10/168 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 I DIETTGLD N IIEIGAV++ + S T T++V + P G G+ + Sbjct: 10 NVIYLDIETTGLDENNCEIIEIGAVKIKNLSVT--TYEVLIRPKGNVPVSIYKLCQGLKE 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L + I E ++ I HN F+ F++ + I + D++ Sbjct: 68 EDLMNSRHLEDIKKEL--LVFLEDLPLICHNGGFERKFLSYHIPEIKNEIF------DSM 119 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ P + + + H L DS V ++ Sbjct: 120 ELSAILEPWRKEYNLDSLIKSITILDKDEFHRGLEDSIDTLKVVNSLL 167 >gi|298207508|ref|YP_003715687.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus HTCC2559] gi|83850144|gb|EAP88012.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus HTCC2559] Length = 1454 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 75/237 (31%), Gaps = 19/237 (8%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + R I+I D K + + P+G + Sbjct: 2 YLIFDTETTGLPKNYNAPITDTDNWPRCIQIAWQLHDDMGKLVSHDDMLIKPDGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + ++HGI+ E ++ +Q + N FD+ + AE R D Sbjct: 62 SEQIHGISTELADKNGVDLVDSLHKFNEALKQTKFVVGQNVAFDINIMGAEFYRKGIDNP 121 Query: 119 ---------DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + I + + + ++ + H A D + Sbjct: 122 LQELPVLDTCTETTAELCKIPGGRGGKFKLPTLTELHQFLFNKAFNEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK 226 +++++ + D F ++ I L+ + +++ +K Sbjct: 182 CFLELIRKRIYTAEELDVSPDYFENFSEENPQTIQLIGLKHINLKKASEQIRKALEK 238 >gi|91785922|ref|YP_546874.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666] gi|91695147|gb|ABE41976.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666] Length = 203 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 6/102 (5%) Query: 7 MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+ I V D ETTGL DR E+ V + +R FQ + G + L G Sbjct: 1 MKPIAVIDFETTGLSPAMGDRATEVAIVLVEGGRVVDR-FQSLMN-AGVRIPAFITSLTG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 IT+ + P +++ ++ F NA +AHNA FD F Sbjct: 59 ITNAMVASAPDAATVMTDANRFV--GNAPLVAHNASFDRKFW 98 >gi|332705935|ref|ZP_08426009.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L] gi|332355339|gb|EGJ34805.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L] Length = 818 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 VFD+ETTG D ++EI A+ L+D K R F ++ Sbjct: 465 VFDVETTGFSVSQDEVVEIAAIRLVDGKKQAR-FHAYI 501 >gi|329117787|ref|ZP_08246504.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parauberis NCFD 2020] gi|326908192|gb|EGE55106.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parauberis NCFD 2020] Length = 1465 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 6/172 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMYKGNIL-EQFDEFIDP-GHPLSAFTTELTGITDN 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + EF F + +AHNA FDVGF+NA R N + I Sbjct: 485 HLVGAKPLHQVLVEFQAFCKD--TVLVAHNASFDVGFMNANYARENLPKITQPVIDTLEF 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ + + H H A D+ + + + Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVALDH--HHMANYDAEATGRLLFIFLKDARE 592 >gi|312871734|ref|ZP_07731822.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 3008A-a] gi|311092676|gb|EFQ51032.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 3008A-a] Length = 933 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + N ++ ++ Sbjct: 69 QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175 IA PS + + HR+ AL+ + +L + I+M+ Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIDKIEML 178 >gi|331265607|ref|YP_004325237.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5] gi|326682279|emb|CBY99896.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5] Length = 1463 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GIT + Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITYD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|302191304|ref|ZP_07267558.1| Rad3-related DNA helicase [Lactobacillus iners AB-1] Length = 933 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + N ++ ++ Sbjct: 69 QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175 IA PS + + HR+ AL+ + +L + I+M+ Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIEKIEML 178 >gi|162455854|ref|YP_001618221.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum 'So ce 56'] gi|161166436|emb|CAN97741.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum 'So ce 56'] Length = 258 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG D DRIIE+G V R + + P GR E+ +HGI D + Sbjct: 47 FVDVETTGRDPAGDRIIELGIVIGRSGEILTR-YNWLIHP-GRPIPAESTAIHGIKDADV 104 Query: 71 KDKPSF 76 + KPSF Sbjct: 105 EGKPSF 110 >gi|118471901|ref|YP_888535.1| hypothetical protein MSMEG_4259 [Mycobacterium smegmatis str. MC2 155] gi|118173188|gb|ABK74084.1| DNA polymerase III, epsilon subunit [Mycobacterium smegmatis str. MC2 155] Length = 672 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 78/224 (34%), Gaps = 17/224 (7%) Query: 9 KIVFDIETTGLDSKN-------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +V D+ETTG +K D I EIGAV++ + P GR P+ ++ Sbjct: 76 FVVVDLETTGGRAKATAPGGLCDAITEIGAVKVRGGEVLGE-LATLVDP-GRAIPPQIVE 133 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT ++D P ++ F + + A +AHNA FD+GF+ A +R P Sbjct: 134 LTGITTAMVRDAPRIDAVLPMFLE--FARGAVLVAHNAGFDIGFLRAAAERTQLTWPRPP 191 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + R + S H AL D+ DV ++ Sbjct: 192 VLCTVKLARRVLTRDEAPSVRLSELARLFGASTTPTHRALDDARATVDVLHGLIERVGNQ 251 Query: 182 NFGFKTN-----EDRFFKEEKKTVPNISLLKRDKPLFTR-ITKE 219 + D + + L R R + E Sbjct: 252 GVHTLADLRAYLPDTTPAQRRNRALADGLPNRPGVYLFRGPSDE 295 >gi|330985867|gb|EGH83970.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315] Length = 237 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 68/200 (34%), Gaps = 6/200 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ET+GL+ D+++ IGAV + D + + F+ L + + + + Sbjct: 42 RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVLIHGLAP 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +P+ + + + + +A FD ++ L+ L Sbjct: 102 SAIAAGCEPAEALLDFME----FVGESPILGFHAPFDQHMLSRALKESLDYRLRHPFFDA 157 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++ + +H A D+ + +++ + + + Sbjct: 158 AEIAPMLCEQANLRHAGLDDWTQFFGLHAEERHNASADALVTAELALILFSHARRQQIDS 217 Query: 186 KTNEDRFFKEEKKTVPNISL 205 + + ++ + S Sbjct: 218 PRLLEERLGQWRRRKQSHSF 237 >gi|302188448|ref|ZP_07265121.1| exonuclease [Pseudomonas syringae pv. syringae 642] Length = 237 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 68/200 (34%), Gaps = 6/200 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ET+GL+ D+++ IGAV + D + + F+ L + + + + Sbjct: 42 RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVLIHGLAP 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +P + + ++ + +A FD ++ L+ L Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLSRALKESLGYRLQHPFFDA 157 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++ + +H A D+ + +++ + + + Sbjct: 158 AEIAPMLCEHANLRHAGLDDWTRFFGLHAEERHHASADALVTAELALILFSHARRQQIDS 217 Query: 186 KTNEDRFFKEEKKTVPNISL 205 + + ++ + S Sbjct: 218 PLRLEEALGQWRRRRQSHSF 237 >gi|163787271|ref|ZP_02181718.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1] gi|159877159|gb|EDP71216.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1] Length = 1128 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 71/229 (31%), Gaps = 19/229 (8%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + D R I+I + P G + Sbjct: 2 YLIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDAMGNCIEHQDYLVKPEGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A K+HGI+ E +++ S E ++ + + N KFD+ + AE R + Sbjct: 62 AEKIHGISTELAQEQGVSLSEVLEKFNTALSKTKFVVGQNVKFDLNIMGAEFVREDVANP 121 Query: 119 ---------DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 I ++ + + ++ H A D + Sbjct: 122 LQELPVLDTCTEHTASLCQIPGGRYGKFKLPTLTELHQFLFNTPFGEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + +++ D F K ++ I L+ R + Sbjct: 182 CFFELIRKQQYTQEQLDVQPDYFQKFSEENPDTIQLIGLKHINLKRASA 230 >gi|325298421|ref|YP_004258338.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] gi|324317974|gb|ADY35865.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] Length = 258 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 63/171 (36%), Gaps = 8/171 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + DRI+EI +++ + ++ ++T + + P + +HGI DE Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKIYPNGNEESKT--MRINPEMH-IPETSTAIHGIHDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F I E + N + L+ L + ID Sbjct: 67 DVADCPTFKQIAKELAKSIEGADIAGFNSNRFDVPVLVEEFLRAGIDIDLSKRKFIDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I + S ++ + H A D+ +V + Sbjct: 127 IYHK----LEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLKAQLDRYP 173 >gi|169831719|ref|YP_001717701.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator MP104C] gi|169638563|gb|ACA60069.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator MP104C] Length = 236 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL D +I + V ++ N F + P R+ A + GIT E Sbjct: 51 VIDTETTGLRPDAGDEVISVACVRVVSAKIQNDYFYTLVDPE-REVPELAATITGITTER 109 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ +P + N +FD+ F+N L+R L+P ++D LS+ Sbjct: 110 VQGQPVLEKVLPRMLREMAG--GVITGFNIQFDLVFLNNGLKRKCGTTLNPPMVLDVLSL 167 Query: 130 ARRKHP 135 R P Sbjct: 168 CRILKP 173 >gi|306824435|ref|ZP_07457781.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433222|gb|EFM36192.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 1463 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185 R+ L L KR+G+ H + + A LL ++ N Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTNLARL 600 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + +K + + ++ +++ I Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631 >gi|126651265|ref|ZP_01723475.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. B14905] gi|126592103|gb|EAZ86169.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. B14905] Length = 914 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 8/175 (4%) Query: 13 DIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ETTG DR+I+I V + D + RT+ F+ P G+ L IT+E +K Sbjct: 2 DLETTGHSPANGDRMIQIAIVIMKD-WEIERTYTKFINP-GKAIPSFIQDLTHITNEDVK 59 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 D F ++ + ++AHNA FD+ F+ AE +R ++ Sbjct: 60 DSYPFEEHADYIYELLAD--CVFVAHNADFDLSFLQAEFKRAGLPKWQGKKMDTVELAKI 117 Query: 132 RKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 S L L I +HR+ A + L + +++ Q+ Sbjct: 118 LFPMSLGFKLGDLAADLNIELANAHRADDDARATAELFKCCWKELLNL-PQLTLE 171 >gi|330970909|gb|EGH70975.1| exonuclease [Pseudomonas syringae pv. aceris str. M302273PT] Length = 237 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 69/200 (34%), Gaps = 6/200 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ET+GL+ D+++ IGAV + D + + F+ L + + + + Sbjct: 42 RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVLIHGLAP 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +P + + ++ + +A FD ++ L+ L + Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLSRALKESLGYRLQHAFFDA 157 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++ + +H A D+ + +++ + + + Sbjct: 158 AEIAPMLCEHANLRHAGLDDWTRFFGLHAEQRHHASADALVTAELALILFSHARRQQIDS 217 Query: 186 KTNEDRFFKEEKKTVPNISL 205 + + ++ + S Sbjct: 218 PLRLEEALGQWRRRRQSHSF 237 >gi|326800820|ref|YP_004318639.1| DNA polymerase III subunit epsilon [Sphingobacterium sp. 21] gi|326551584|gb|ADZ79969.1| DNA polymerase III, epsilon subunit [Sphingobacterium sp. 21] Length = 463 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 7/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + DIETTG + I EI A+ + D + ++ + P L GI+ Sbjct: 1 MEYAIVDIETTGGHAAGHGITEI-AICIHDGAGICHRYETLVNPQAH-IPLHISALTGIS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + D P+F+ I + + ++AHN FD FI L P Sbjct: 59 NEMVADAPTFAEIAATVYQLLEG--RIFVAHNVNFDYSFIKHHLAFCGYSWNAPKLCTVR 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 LS + L LC++ I+I ++H A D+ ++ ++ G Sbjct: 117 LSRKVLPG-FASYSLGKLCQQLNISI--TNRHRAGGDATATGILFSLLLEKGP 166 >gi|312875685|ref|ZP_07735686.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2053A-b] gi|311088939|gb|EFQ47382.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2053A-b] Length = 933 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + N ++ ++ Sbjct: 69 QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175 IA PS + + HR+ AL+ + +L + I+M+ Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIEKIEML 178 >gi|228473352|ref|ZP_04058106.1| exonuclease [Capnocytophaga gingivalis ATCC 33624] gi|228275254|gb|EEK14052.1| exonuclease [Capnocytophaga gingivalis ATCC 33624] Length = 164 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 7/166 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + + IG V + + T+ + P SP ++HG++ Sbjct: 4 FVALDFET--ANQYRSSVCSIGLVFVENNEIV-DTYYQLIKPAPNYYSPFCTQVHGLSQY 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F ++ E + +AHN+ FD G + L + Sbjct: 61 DTEKAPLFPEVWKEILPKIKD--LPLVAHNSMFDEGCLREVLAYYALPQHTNPFFCTLRA 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + L+++ +G + H AL D+ + + +++ Sbjct: 119 ARKSLPQLVNHKLDTVSAYFGFD--LKQHHHALADAEACAHIALEL 162 >gi|125718854|ref|YP_001035987.1| DNA polymerase III PolC [Streptococcus sanguinis SK36] gi|166217455|sp|A3CQI2|DPO3_STRSV RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|125498771|gb|ABN45437.1| DNA polymerase III polC-type, putative [Streptococcus sanguinis SK36] Length = 1462 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 +++ + EF +F + + +AHNA FDVGF+N +R + ++ Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKIIQPVIDTLEF 539 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 ++ + + + H + + A LL + N Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T+ +K V + ++ +++ Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624 >gi|66047927|ref|YP_237768.1| exonuclease [Pseudomonas syringae pv. syringae B728a] gi|63258634|gb|AAY39730.1| Exonuclease [Pseudomonas syringae pv. syringae B728a] Length = 237 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 69/200 (34%), Gaps = 6/200 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ET+GL+ D+++ IGAV + D + + F+ L + + + + Sbjct: 42 RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVLIHGLAP 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +P + + ++ + +A FD ++ L+ L + Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLSRALKESLGYRLQHAFFDA 157 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++ + +H A D+ + +++ + + + Sbjct: 158 AEIAPMLCEHANLRHAGLDDWTRFFGLHAEQRHHASADALVTAELALILFSHARRQQIDS 217 Query: 186 KTNEDRFFKEEKKTVPNISL 205 + + ++ + S Sbjct: 218 PLRLEEALGQWRRRRQSHSF 237 >gi|29377213|ref|NP_816367.1| exonuclease [Enterococcus faecalis V583] gi|227554221|ref|ZP_03984268.1| DNA-directed DNA polymerase III [Enterococcus faecalis HH22] gi|229549147|ref|ZP_04437872.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 29200] gi|255971865|ref|ZP_05422451.1| exonuclease [Enterococcus faecalis T1] gi|256957963|ref|ZP_05562134.1| exonuclease [Enterococcus faecalis DS5] gi|256961017|ref|ZP_05565188.1| exonuclease [Enterococcus faecalis Merz96] gi|257079901|ref|ZP_05574262.1| exonuclease [Enterococcus faecalis JH1] gi|257087703|ref|ZP_05582064.1| exonuclease [Enterococcus faecalis D6] gi|293384593|ref|ZP_06630459.1| exonuclease [Enterococcus faecalis R712] gi|293386822|ref|ZP_06631393.1| exonuclease [Enterococcus faecalis S613] gi|294779917|ref|ZP_06745299.1| exonuclease [Enterococcus faecalis PC1.1] gi|300861254|ref|ZP_07107341.1| exonuclease [Enterococcus faecalis TUSoD Ef11] gi|307269234|ref|ZP_07550588.1| exonuclease [Enterococcus faecalis TX4248] gi|307276973|ref|ZP_07558083.1| exonuclease [Enterococcus faecalis TX2134] gi|312906419|ref|ZP_07765427.1| exonuclease [Enterococcus faecalis DAPTO 512] gi|312951911|ref|ZP_07770799.1| exonuclease [Enterococcus faecalis TX0102] gi|312979422|ref|ZP_07791110.1| exonuclease [Enterococcus faecalis DAPTO 516] gi|29344679|gb|AAO82437.1| exonuclease [Enterococcus faecalis V583] gi|227176668|gb|EEI57640.1| DNA-directed DNA polymerase III [Enterococcus faecalis HH22] gi|229305701|gb|EEN71697.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 29200] gi|255962883|gb|EET95359.1| exonuclease [Enterococcus faecalis T1] gi|256948459|gb|EEU65091.1| exonuclease [Enterococcus faecalis DS5] gi|256951513|gb|EEU68145.1| exonuclease [Enterococcus faecalis Merz96] gi|256987931|gb|EEU75233.1| exonuclease [Enterococcus faecalis JH1] gi|256995733|gb|EEU83035.1| exonuclease [Enterococcus faecalis D6] gi|291078139|gb|EFE15503.1| exonuclease [Enterococcus faecalis R712] gi|291083825|gb|EFE20788.1| exonuclease [Enterococcus faecalis S613] gi|294453029|gb|EFG21449.1| exonuclease [Enterococcus faecalis PC1.1] gi|295113676|emb|CBL32313.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Enterococcus sp. 7L76] gi|300850293|gb|EFK78043.1| exonuclease [Enterococcus faecalis TUSoD Ef11] gi|306506396|gb|EFM75556.1| exonuclease [Enterococcus faecalis TX2134] gi|306514453|gb|EFM83014.1| exonuclease [Enterococcus faecalis TX4248] gi|310627573|gb|EFQ10856.1| exonuclease [Enterococcus faecalis DAPTO 512] gi|310630100|gb|EFQ13383.1| exonuclease [Enterococcus faecalis TX0102] gi|311287793|gb|EFQ66349.1| exonuclease [Enterococcus faecalis DAPTO 516] gi|315025497|gb|EFT37429.1| exonuclease [Enterococcus faecalis TX2137] gi|315035108|gb|EFT47040.1| exonuclease [Enterococcus faecalis TX0027] gi|315154299|gb|EFT98315.1| exonuclease [Enterococcus faecalis TX0031] gi|315159608|gb|EFU03625.1| exonuclease [Enterococcus faecalis TX0312] gi|315162098|gb|EFU06115.1| exonuclease [Enterococcus faecalis TX0645] gi|315573774|gb|EFU85965.1| exonuclease [Enterococcus faecalis TX0309B] gi|315580288|gb|EFU92479.1| exonuclease [Enterococcus faecalis TX0309A] gi|323481659|gb|ADX81098.1| DNA polymerase III, epsilon subunit, 3'-5' exonuclease family protein [Enterococcus faecalis 62] gi|329578017|gb|EGG59432.1| exonuclease [Enterococcus faecalis TX1467] Length = 177 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 7/167 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M FD ET I V++ + + F + P ++HGI Sbjct: 1 MNFYAFDFET--ASYDKHSACSIAIVKVENSRIVDE-FYTLIKPETPFF-WRNTQIHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + P F + + N +AHNA FD + L + + + Sbjct: 57 ESDVVNAPKF-PEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + + LN++C+ IT + H AL DS +++ ++ Sbjct: 116 KTSRKLFPEFPNHKLNTVCENLNIT--LNNHHDALEDSRACAEILLQ 160 >gi|224023848|ref|ZP_03642214.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM 18228] gi|224017070|gb|EEF75082.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM 18228] Length = 258 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 12/200 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + DRI+EI +++ + ++ ++T + + P G + +HGI D Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKVYPNGNEESKT--MRINP-GMHIPEASSAIHGIYDA 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + + + N + L+ L + ID Sbjct: 67 DVADCPTFKEVAKDIARDLEGADIAGFNSNRFDVPVLVEEFLRAGIDIDLTRRKFIDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + S ++ + H A D+ +V + N Sbjct: 127 IYHK----LEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLKAQLDHYP----DVLEN 178 Query: 189 EDRFFKEEKKTVPNISLLKR 208 + F E N+ R Sbjct: 179 DINFLSEYSSYNKNVDFAGR 198 >gi|315653552|ref|ZP_07906472.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195] gi|315488914|gb|EFU78556.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195] Length = 936 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++DRII+ G + D T +T+ + P + L GI++ Sbjct: 14 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 71 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + N ++ ++ Sbjct: 72 QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 131 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175 IA PS + + HR+ AL+ + +L + I+M+ Sbjct: 132 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIEKIEML 181 >gi|259500615|ref|ZP_05743517.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335] gi|259167999|gb|EEW52494.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335] Length = 936 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++DRII+ G + D T +T+ + P + L GI++ Sbjct: 14 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 71 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + N ++ ++ Sbjct: 72 QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 131 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175 IA PS + + HR+ AL+ + +L + I+M+ Sbjct: 132 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIEKIEML 181 >gi|298372076|ref|ZP_06982066.1| exonuclease [Bacteroidetes oral taxon 274 str. F0058] gi|298274980|gb|EFI16531.1| exonuclease [Bacteroidetes oral taxon 274 str. F0058] Length = 252 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 79/204 (38%), Gaps = 10/204 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG++ DRI+E+ +++ + +KT++T + + P ++ +HGI D+ Sbjct: 10 VFFDLETTGINVSTDRIVELTYLKVEPNGNKTSKT--IKINPEMH-IPEQSSAIHGIYDQ 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F I + + + L+ L + +D + Sbjct: 67 DVADCPTFRQIAANLAKDIEGCDLAGFNSVNFDIPLLVEEFLRVGVDIDLKKRKFVDVMV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI--NFGFK 186 I +K P + ++ + + H + D+ ++ + + + + F Sbjct: 127 IFYKKEP----RNLAAAYKFYCDKTLENAHSSEADTLATFEILEEQLNKYPDLENSVDFL 182 Query: 187 TNEDRFFKEEKKTVPNISLLKRDK 210 + K I ++ + Sbjct: 183 SEFSSHNKHADYAGRIIYDSRKRE 206 >gi|289674377|ref|ZP_06495267.1| exonuclease [Pseudomonas syringae pv. syringae FF5] Length = 237 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 69/200 (34%), Gaps = 6/200 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ET+GL+ D+++ IGAV + D + + F+ L + + + + Sbjct: 42 RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVLIHGLAP 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +P + + ++ + +A FD ++ L+ L + Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLSRALKESLGYRLQHAFFDV 157 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++ + +H A D+ + +++ + + + Sbjct: 158 AEIAPMLCEHANLRHAGLDDWTRFFGLHAEQRHHASADALVTAELALILFSHARRQQIDS 217 Query: 186 KTNEDRFFKEEKKTVPNISL 205 + + ++ + S Sbjct: 218 PLRLEEALGQWRRRRQSHSF 237 >gi|329920271|ref|ZP_08277055.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus iners SPIN 1401G] gi|328936316|gb|EGG32764.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus iners SPIN 1401G] Length = 933 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + N ++ ++ Sbjct: 69 QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175 IA PS + + HR+ AL+ + +L + I+M+ Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIEKIEML 178 >gi|329955851|ref|ZP_08296654.1| exonuclease [Bacteroides clarus YIT 12056] gi|328525231|gb|EGF52281.1| exonuclease [Bacteroides clarus YIT 12056] Length = 256 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 8/173 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + +DRI+EI +++ + ++ +T + + P EA +HGI DE Sbjct: 10 VFFDLETTGTNINSDRIVEICYLKVYPNGNEETKTMR--INPEMH-IPAEASAVHGIYDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + + + N L+ + + +D Sbjct: 67 DVADCPTFKEVARGIANDIEGCDLAGFNSNRFDIPVLAEEFLRADVDIDMSRRKFVDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 I + S ++ + H A D+ +V + + + Sbjct: 127 IFHK----MEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLMSQLDRYPDL 175 >gi|39996485|ref|NP_952436.1| exonuclease [Geobacter sulfurreducens PCA] gi|39983365|gb|AAR34759.1| exonuclease [Geobacter sulfurreducens PCA] gi|298505487|gb|ADI84210.1| 3'-to-5' exonuclease, putative [Geobacter sulfurreducens KN400] Length = 181 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 5/172 (2%) Query: 4 KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 KN + D+ETTGL DR++E+ AV + + + F + + + Sbjct: 2 KNHHLQAAIDVETTGLFPGYGDRVVEVAAVLVDEGQIVSE-FSSLIR-VTKAIPRHVSMI 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGIT++ L D+P ++ DF A +AHNA+FD+ F+ E R+ S Sbjct: 60 HGITNDMLADQPLPEEVYPALGDFIGT--ALLVAHNARFDLAFLRHEFGRLGLSLNSRSA 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L+ R + +G H AL D+ L + V+ ++ Sbjct: 118 CTLELARRRLPELTDHRLETVYQHLFGAVPEGTRCHRALDDARLTARVWGEL 169 >gi|325695495|gb|EGD37395.1| DNA polymerase III PolC [Streptococcus sanguinis SK150] Length = 1462 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 +++ + EF +F + + +AHNA FDVGF+N +R + ++ Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 ++ + + + H + + A LL + N Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T+ +K V + ++ +++ Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624 >gi|324989747|gb|EGC21690.1| DNA polymerase III PolC [Streptococcus sanguinis SK353] Length = 1462 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 +++ + EF +F + + +AHNA FDVGF+N +R + ++ Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 ++ + + + H + + A LL + N Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T+ +K V + ++ +++ Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624 >gi|297584389|ref|YP_003700169.1| DnaQ family exonuclease/DinG family helicase [Bacillus selenitireducens MLS10] gi|297142846|gb|ADH99603.1| DnaQ family exonuclease/DinG family helicase [Bacillus selenitireducens MLS10] Length = 935 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 63/168 (37%), Gaps = 7/168 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++ D+ETTG+ K DRII+I L D R F ++ + L GI+ Sbjct: 3 RYVILDLETTGVAYDKGDRIIQIAYQVLEDQEVLKR-FSTYIN-YDKPVPAFIQSLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E LK+ P F + E E AHN +FD+ F+N L+ I Sbjct: 61 GEHLKNAPLFEEVAPEILSDLEEAYFV--AHNVEFDLKFLNESLEDAGYASFQGPVIDTV 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L+ L K T + H A D ++ ++ Sbjct: 119 ELARICLPSEDSYRLSDLAKTVQATH--TAPHQADSDVEATRALFNEL 164 >gi|152970543|ref|YP_001335652.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330015632|ref|ZP_08308213.1| ribonuclease T [Klebsiella sp. MS 92-3] gi|166228567|sp|A6TA01|RNT_KLEP7 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|150955392|gb|ABR77422.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328531231|gb|EGF58076.1| ribonuclease T [Klebsiella sp. MS 92-3] Length = 215 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ ++ ++ + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + + A +AHNA FD F +R Sbjct: 80 INPHDPQRGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACIAAGMPFDGAQAHSALYDTEQTAQLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|77461407|ref|YP_350914.1| exonuclease [Pseudomonas fluorescens Pf0-1] gi|77385410|gb|ABA76923.1| putative DNA poymerase [Pseudomonas fluorescens Pf0-1] Length = 235 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 69/200 (34%), Gaps = 6/200 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ETTGL+ DR++ IGAV + D + ++ F+ C + + Sbjct: 40 RWVVLDLETTGLNLSKDRVLSIGAVVIEDGAIDFSQQFERTLQCHELKLGPSVLIHGLAP 99 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +P + E +F + + +A +A FD + L+ L + Sbjct: 100 SAIAAGSEP--TEALVELLEFIGD--SPVLAFHASFDQHMLGRALKEHLGHKLQTVFLDV 155 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + + + +H A D+ +++ + + Q Sbjct: 156 AQIAPLVCPQAHIREAGLDEWIDWFKLEVFERHHASADALATAELALILFSRARQQQIHS 215 Query: 186 KTNEDRFFKEEKKTVPNISL 205 N + + K+ S Sbjct: 216 PLNLQQRLSQWKRRQQTHSF 235 >gi|332365112|gb|EGJ42875.1| DNA polymerase III PolC [Streptococcus sanguinis SK1059] Length = 1462 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 +++ + EF +F + + +AHNA FDVGF+N +R + ++ Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 ++ + + + H + + A LL + N Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T+ +K V + ++ +++ Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624 >gi|332359305|gb|EGJ37126.1| DNA polymerase III PolC [Streptococcus sanguinis SK49] Length = 1462 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 +++ + EF +F + + +AHNA FDVGF+N +R + ++ Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 ++ + + + H + + A LL + N Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T+ +K V + ++ +++ Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624 >gi|327472427|gb|EGF17858.1| DNA polymerase III PolC [Streptococcus sanguinis SK408] Length = 1462 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 +++ + EF +F + + +AHNA FDVGF+N +R + ++ Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 ++ + + + H + + A LL + N Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T+ +K V + ++ +++ Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624 >gi|152979466|ref|YP_001345095.1| ribonuclease T [Actinobacillus succinogenes 130Z] gi|150841189|gb|ABR75160.1| ribonuclease T [Actinobacillus succinogenes 130Z] Length = 226 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 72/188 (38%), Gaps = 15/188 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET GL+ + D ++E+ AV ++ D ++T+ + P G +PE++K++G Sbjct: 30 VVIDVETAGLNCQTDGLLELAAVTLKMNDRGDLLPDQTYHCHIRPFEGAGINPESMKING 89 Query: 65 ITDEFLKDKPS----------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 I E + Q + +AHNA FD GF+ A +R Sbjct: 90 IDLESPIRNAIAVSESEAITGLFQMVRRGQKNAGCQRSIIVAHNAAFDHGFVMAAAERTK 149 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + L C+ I H AL D+ ++++ M Sbjct: 150 IKRNPFHPFGSFDTATLSGLMFGQTVLIKACQSASIPFDSNQAHSALYDTERTAELFCYM 209 Query: 175 MVGGSQIN 182 + + Sbjct: 210 VNHLKALG 217 >gi|295693069|ref|YP_003601679.1| CRISPR-associated protein, cas2 [Lactobacillus crispatus ST1] gi|295031175|emb|CBL50654.1| CRISPR-associated protein, Cas2 [Lactobacillus crispatus ST1] Length = 298 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 65/168 (38%), Gaps = 7/168 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V DIETTGL+ + D+II IGA++ L + F + + Sbjct: 131 VLDIETTGLNLEKDKIISIGAIKYLENN--DCEKFYRLIKVDTEVPDNIEKITQLNKGVL 188 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + F + + +N FD+ F+N + ++ L + ++ Sbjct: 189 ANKGIDIKTALLDLRKFLAD--RIVVGYNLPFDINFLNRDFKKYCHYSLLNECVDLLSAV 246 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 ++ L+++ + Y I + + H +L D+ ++ K++ Sbjct: 247 KKKNVFLDNYHLSTVLENYNIK--NSNPHNSLADAVATMELLKKLIKN 292 >gi|282880255|ref|ZP_06288971.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1] gi|281305850|gb|EFA97894.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1] Length = 905 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 9/181 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGR--------KNSPEAL 60 +VFD ETTGL+ D I++I AV + F VF+ N N Sbjct: 523 VVFDTETTGLNVFEDDIVQIAAVRMRQGCVVPGSEFVVFMRTNREIPRKLGNIDNPLIEE 582 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 H + F + + ++ N + +L+ D Sbjct: 583 IQHHQLYSPSEGLKMFLEYVGNSRLLGHNADYDYHILNFNLQRYLPDIQLEERCNMYFDS 642 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++I L +++ + ++ H + + + Sbjct: 643 LKLIRLLEPNLKEYKLKYLLSVLHLEGQNSHLADADVHATCSVVRHCYEKAKLHINSQRE 702 Query: 181 I 181 Sbjct: 703 W 703 >gi|116873334|ref|YP_850115.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742212|emb|CAK21336.1| ATP-dependent helicase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 928 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 5/107 (4%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + R IV D+ETTG + + DRII+ A + + T+ FL P + +L Sbjct: 2 KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYSTFLNPE-KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 GI + +K+ P F + + ++AHN FD F+ E+ Sbjct: 60 GIAPKDVKNAPLFEDVAPIIASLLED--TIFVAHNVSFDWTFLEREM 104 >gi|330898819|gb|EGH30238.1| exonuclease [Pseudomonas syringae pv. japonica str. M301072PT] Length = 237 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 69/200 (34%), Gaps = 6/200 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ET+GL+ D+++ IGAV + D + + F+ L + + + + Sbjct: 42 RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVLIHGLAP 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +P + + ++ + +A FD ++ L+ L + Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLSRALKESLGYRLQHAFFDA 157 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++ + +H A D+ + +++ + + + Sbjct: 158 AEIAPMLCEHANLRHAGLDDWTRFFGLHAEQRHHASADALVTAELALILFSHARRQQIDS 217 Query: 186 KTNEDRFFKEEKKTVPNISL 205 + + ++ + S Sbjct: 218 PLRLEEALGQWRRRRQSHSF 237 >gi|312874151|ref|ZP_07734185.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2052A-d] gi|311090221|gb|EFQ48631.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2052A-d] Length = 933 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + N ++ ++ Sbjct: 69 QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175 IA PS + + HR+ AL+ + +L + I+M+ Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIDKIEML 178 >gi|294155324|ref|YP_003559708.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli MP145] gi|291600469|gb|ADE19965.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli MP145] Length = 1447 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 3/176 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FDIETTGL + +IE GA + + S +R Q F+ S + L GITD+ Sbjct: 416 YVCFDIETTGLSPRYHELIEFGATIIKNGSVISRE-QFFIK-AKNSLSAFTINLTGITDQ 473 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK++ E N +AHN+ FD+ F+ + + + I + Sbjct: 474 MLKNEGLELKPALLKISKLFE-NRIAVAHNSTFDMNFLFQKFLDNKMEIPKTTFIDTLVV 532 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 S++ L + R GI + + H A D+ +L++ +I M ++IN Sbjct: 533 SRLLFSKDSKHRLENYVGRLGIIYNSDAAHRADYDAEILANAWIPSMNLLAEININ 588 >gi|303228659|ref|ZP_07315484.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Veillonella atypica ACS-134-V-Col7a] gi|302516639|gb|EFL58556.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Veillonella atypica ACS-134-V-Col7a] Length = 861 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 4/163 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V+D+E+TG D+ DRII+I A+ + F+ F+ P S +L + Sbjct: 495 VVYDVESTGTDTTQDRIIQIAAMRIDKDGNEIERFERFINPG---KSVGTSQLVHGFTDA 551 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S N + HN +D+ ++ EL R N + DTL I Sbjct: 552 YLAEHGESPKVVLEAFKEFSNNRIIVGHNVNYDISILSHELARHNLGEPQFKAVYDTLDI 611 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 RR +P+ N +Y I+H H A+ D + I Sbjct: 612 FRRFYPTLENHKLGFLSKY-FPINHTPTHNAMDDIIATGQLLI 653 >gi|327460706|gb|EGF07041.1| DNA polymerase III PolC [Streptococcus sanguinis SK1] Length = 1462 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 +++ + EF +F + + +AHNA FDVGF+N +R + ++ Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 ++ + + + H + + A LL + N Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T+ +K V + ++ +++ Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624 >gi|146284212|ref|YP_001174365.1| exonuclease [Pseudomonas stutzeri A1501] gi|145572417|gb|ABP81523.1| exonuclease [Pseudomonas stutzeri A1501] gi|327482571|gb|AEA85881.1| exonuclease [Pseudomonas stutzeri DSM 4166] Length = 235 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 68/177 (38%), Gaps = 5/177 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D+ETTGL K D +I IGAV + D + ++ F+ LC + N + + Sbjct: 39 RLVVLDLETTGLHLKRDLVIAIGAVVIEDGAIDYSQQFECTLCRQVKVNESVLIHGIAPS 98 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + P+ + + + + +A +A FD + L+ L+ S + Sbjct: 99 ELANGLPPAEALLSFMEFA----AGSIVLAFHAPFDQRMLGRALKNELGYSLENSFLDVA 154 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + + I +H A D+ +++ + ++ +I Sbjct: 155 DLAPMLFPEAMIHRGSLDHWLDYFNIHIPQRHNASADAMATAEIALILLNRAQRIGL 211 >gi|327400242|ref|YP_004341081.1| DNA polymerase III subunit epsilon [Archaeoglobus veneficus SNP6] gi|327315750|gb|AEA46366.1| DNA polymerase III, epsilon subunit [Archaeoglobus veneficus SNP6] Length = 196 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 71/190 (37%), Gaps = 6/190 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D+E+TGL+ K D I+ I + ++ + F + P +K E++K HGI Sbjct: 8 RYSVIDVESTGLNPKKDEIVAIAVIPMVGSRIILSDYFFSLVRP--KKLKGESIKYHGID 65 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + P F SI S + + + L+ + ++ Sbjct: 66 IKAVSKAPEFQSIASRLKHMLEDSIIVSYTEFDAKILKSHFSRLKIRLELDCIDISQVEH 125 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + + + + K I H AL D++ + ++ + +V ++ + Sbjct: 126 WIARKEGRAENHDMDGLIKKYSLEEIYR---HSALADAYYTACIFQRQLVKLAEYGVTLQ 182 Query: 187 TNEDRFFKEE 196 + +E+ Sbjct: 183 ELKRIGKREK 192 >gi|325688979|gb|EGD30987.1| DNA polymerase III PolC [Streptococcus sanguinis SK115] Length = 1462 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 +++ + EF +F + + +AHNA FDVGF+N +R + ++ Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 ++ + + + H + + A LL + N Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T+ +K V + ++ +++ Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624 >gi|324992474|gb|EGC24395.1| DNA polymerase III PolC [Streptococcus sanguinis SK405] gi|324995996|gb|EGC27907.1| DNA polymerase III PolC [Streptococcus sanguinis SK678] gi|327488780|gb|EGF20579.1| DNA polymerase III PolC [Streptococcus sanguinis SK1058] Length = 1462 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 +++ + EF +F + + +AHNA FDVGF+N +R + ++ Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 ++ + + + H + + A LL + N Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T+ +K V + ++ +++ Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624 >gi|227890751|ref|ZP_04008556.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus salivarius ATCC 11741] gi|227867160|gb|EEJ74581.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus salivarius ATCC 11741] Length = 937 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 9/186 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 MI++ V D+ETTG D+II+ + + +K F + P G E Sbjct: 9 MIKERI--YAVVDLETTGPKQDGSDKIIQFSC-DFVQSNKIVNHFSTLINP-GMPIPAEV 64 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 KL GI D+ ++ P F + + AHN FD F+++EL+R L+ Sbjct: 65 KKLTGIKDKDVRYAPYFDEVAGTIYAMLQNTTFV--AHNVNFDYSFLSSELERAGYPELE 122 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + L + K ++ H H A D+ +++ I + Sbjct: 123 LPMMDTVQLTQIIYPTLVSYRLIDVSKYLQLSHIHP--HKADSDTKATAELLINLKKRIE 180 Query: 180 QINFGF 185 Sbjct: 181 TFPLIL 186 >gi|332971471|gb|EGK10424.1| ribonuclease T [Psychrobacter sp. 1501(2011)] Length = 268 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 67/205 (32%), Gaps = 16/205 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54 +V D+ET G D+K D ++E+ + ++ L P + Sbjct: 64 VVVDVETAGFDAKTDALLELACIPIIMDEQGKFIPGEALNAHLNPFEGANLEQRALDFTG 123 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P I +E + + HNA FD+ F+NA ++R N Sbjct: 124 IDPNNPMRKAIAEEEQPALRRIFKELKAVRKENDCLKCILVGHNAHFDLSFLNAAIERTN 183 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P L + + + CK GI S H AL D+ ++++ Sbjct: 184 SKNHNPFHQFSVLDTVTLSALAFGQTVLARACKAAGIEFSGTEAHSALYDTQKTAELFCH 243 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKK 198 ++ + + K + Sbjct: 244 ILNSYPMLTNALLEDNTANEKSGVE 268 >gi|330938574|gb|EGH42148.1| exonuclease [Pseudomonas syringae pv. pisi str. 1704B] Length = 237 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 24/200 (12%), Positives = 67/200 (33%), Gaps = 6/200 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ET+GL+ D+++ IGAV + D + + F+ L + + + + Sbjct: 42 RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVLIHGLAP 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +P +F +F + + + + + Sbjct: 102 SAIAAGSEP--VEALLDFMEFVGDSPILGFHAPFDQHMLSRALKESLGYRLQHAFFDTAE 159 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L+ + +G+ +H A D+ + +++ + + + Sbjct: 160 IAPMLCEHANLRHAGLDDWTRFFGL--HAEERHHASADALVTAELALILFSHARRQQIDS 217 Query: 186 KTNEDRFFKEEKKTVPNISL 205 + + ++ + S Sbjct: 218 PLRLEEALGQWRRRRQSHSF 237 >gi|288926239|ref|ZP_06420165.1| exonuclease [Prevotella buccae D17] gi|315606363|ref|ZP_07881379.1| DNA polymerase III epsilon chain [Prevotella buccae ATCC 33574] gi|288337018|gb|EFC75378.1| exonuclease [Prevotella buccae D17] gi|315252054|gb|EFU32027.1| DNA polymerase III epsilon chain [Prevotella buccae ATCC 33574] Length = 284 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 6/198 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGLD NDR+I++ +++ R + P G+ +PE L GI+D+ Sbjct: 10 VVFDLETTGLDLVNDRVIQLSYIKVCPDGTELRG-NEIINP-GKPIAPEITALTGISDDD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD+P+F + + F + N L+ R+ID +I Sbjct: 68 VKDRPAFKELAPRLAEEFKGCDFAGFNSNHFDIPMLAEEFLRAGIDFDFGKCRLIDAQAI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + ++ A Y +M + G + Sbjct: 128 FHK----MERRNLAAAYKFYTGRKMEEDFEAHRADQDTEATYRVLMGELDKYAPGVQEEP 183 Query: 190 DRFFKEEKKTVPNISLLK 207 DR + + S Sbjct: 184 DRVLHNDMDELAEFSKNN 201 >gi|291614958|ref|YP_003525115.1| DNA polymerase III, subunit epsilon [Sideroxydans lithotrophicus ES-1] gi|291585070|gb|ADE12728.1| DNA polymerase III, epsilon subunit [Sideroxydans lithotrophicus ES-1] Length = 235 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 4/178 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D+ETTGL+ D +I IGAV +++ +F V L + E + +HGI+ Sbjct: 42 RVVVVDVETTGLNLITDTLISIGAVAVVNGRIALGDSFSVVLK-QQESSDKENILVHGIS 100 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +D F ++ + IA + FD I +++ + Sbjct: 101 STAQRDGVDPVEALLTFLEYLGKSR--LIAFHVAFDETMIRRAMRQYLGLSFKHEWLDLA 158 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + N I ++H AL D+ + ++ + N Sbjct: 159 YVMPALNRSLMENHRVLDDWIGRFNIHIEARHNALADALATAQLFQIAISQARNKNIN 216 >gi|46198769|ref|YP_004436.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus HB27] gi|55980782|ref|YP_144079.1| DNA polymerase III subunit epsilon-like protein [Thermus thermophilus HB8] gi|46196392|gb|AAS80809.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus HB27] gi|55772195|dbj|BAD70636.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus HB8] Length = 624 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 4/93 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTGLD + D ++ + V +L F+ + P GR SP A +HG+T E Sbjct: 442 AFDLETTGLDPEQDAVVALAGVHVLGRRVLRQEVFEALVNP-GRPISPAATAVHGLTAEM 500 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 L+DKP ++ F F + +AHN FD Sbjct: 501 LRDKPPLEAVLPAFRAFVQD--TVLVAHNGAFD 531 >gi|254495198|ref|ZP_05108122.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] gi|85819550|gb|EAQ40707.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] Length = 461 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 68/178 (38%), Gaps = 7/178 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG K +I EI + + D K F + P + P L GIT+ + Sbjct: 4 VIDIETTGNGFKGQKITEIS-IFVFDGKKIIDEFTSLINPE-QNIPPFITNLTGITNAMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F I + + ++ ++AHN FD I E + + D Sbjct: 62 RYAPKFHEIAKKVEE--LTRDTIFVAHNVNFDYNIIRDEFKSLGFDFKRKKLCT-VRLSR 118 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L ++C I I+ R H A D+ ++++ +++ N Sbjct: 119 KIMPGLRSYSLGNICIDENIPINGR--HRAKGDAEATTELFRRLIERDDSFIINSFLN 174 >gi|312872972|ref|ZP_07733032.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2062A-h1] gi|311091494|gb|EFQ49878.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2062A-h1] Length = 933 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + N ++ ++ Sbjct: 69 QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175 IA PS + + HR+ AL+ + +L + I+M+ Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIDKIEML 178 >gi|157150704|ref|YP_001451113.1| DNA polymerase III PolC [Streptococcus gordonii str. Challis substr. CH1] gi|157075498|gb|ABV10181.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus gordonii str. Challis substr. CH1] Length = 1462 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 +++ + EF +F + + +AHNA FDVGF+N +R + ++ Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 ++ + + + H + + A LL + N Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKYGVTNLKDL 599 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T+ +K V + ++ +++ Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624 >gi|322494373|emb|CBZ29674.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania mexicana MHOM/GT/2001/U1103] Length = 347 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 85/234 (36%), Gaps = 63/234 (26%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVE-------------------------------LLDYS 38 +V D+ETTG + D I+E+ E +++ Sbjct: 108 VVVDLETTGFSATADEILEVACAELRWTPSSHTSSTGPKHTAPCAPSLGEQSVCGVIEGL 167 Query: 39 KT--NRTFQVFLCP-NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE------ 89 T R F ++ P + R+ S A +HGIT E ++ + + SE + Sbjct: 168 WTRGGRVFHRYVRPSDPRRISAAATAVHGITWETVQHCSPWPVVASELVAYMVLVGADGP 227 Query: 90 ------------------QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTLSI 129 Q +AHNA FD F+ L+R + T Sbjct: 228 FSASAQLEAAQAGGHRAVQLPPLVAHNASFDARFLEHHLRRCGYQIFWQPQYPLTCTRQW 287 Query: 130 ARRKHPSSRNDLNSLCKRYGIT---ISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 A+ +P N+L++LC GI + H AL D+ L + ++++M ++ Sbjct: 288 AQVAYPHLANNLDALCAFLGIDGAADRAANGHDALTDATLTALLFLQMCRRWTE 341 >gi|282890349|ref|ZP_06298877.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499731|gb|EFB42022.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 249 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 2/85 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGLD DRIIE+ F+ + P ++++H IT E Sbjct: 9 FVCIDCETTGLDVHADRIIEVAVARFTFDQIL-EQFESLINPEC-PIPESSIQIHHITAE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE 93 + DKP + + + D Sbjct: 67 MVADKPPITQVIPQILDAVRSHTIV 91 >gi|315126562|ref|YP_004068565.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913] gi|315015076|gb|ADT68414.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913] Length = 233 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGLD+ +D I+ +G V ++ + + P R S E++ +HGIT Sbjct: 44 FVALDFETTGLDANSDDIVSVGLVPFNVNRIYCKESRHWVVQP-RRDLSEESIVIHGITH 102 Query: 68 EFLKDKP 74 + + P Sbjct: 103 SEVDEAP 109 >gi|300214468|gb|ADJ78884.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius CECT 5713] Length = 929 Score = 59.2 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 9/186 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 MI++ V D+ETTG D+II+ + + +K F + P G E Sbjct: 1 MIKERI--YAVVDLETTGPKQDGSDKIIQFSC-DFVQSNKIVNHFSTLINP-GMPIPAEV 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 KL GI ++ ++ P F + + AHN FD F+++EL+R L+ Sbjct: 57 KKLTGIKNKDVRYAPYFDEVAGTIYAMLQNTTFV--AHNVNFDYSFLSSELERAGYPELE 114 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + L + K ++ H H A D+ +++ I + Sbjct: 115 LPMMDTVQLTQIIYPTLVSYRLIDVSKYLQLSHIHP--HKADSDTKATAELLINLKKRIE 172 Query: 180 QINFGF 185 Sbjct: 173 TFPLIL 178 >gi|32266846|ref|NP_860878.1| DNA polymerase III subunit epsilon [Helicobacter hepaticus ATCC 51449] gi|32262898|gb|AAP77944.1| DNA polymerase III [Helicobacter hepaticus ATCC 51449] Length = 266 Score = 59.2 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 5/104 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIET G + +IIEIGA+++ ++ F+ ++ + +L GI Sbjct: 74 VFVDIETNGAKPQQCQIIEIGALKVKGGEIIDK-FESYV--YADEVPENITQLTGICQAD 130 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 + PS + EF F ++AHN FD GF++ L++ Sbjct: 131 IAYAPSIKEVLGEFRAFLGT--DVFVAHNVNFDYGFVDYHLRQC 172 >gi|323350531|ref|ZP_08086193.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66] gi|322123213|gb|EFX94898.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66] Length = 1462 Score = 59.2 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 +++ + EF +F + + +AHNA FDVGF+N +R + ++ Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 ++ + + + H + + A LL + N Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T+ +K V + ++ +++ Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624 >gi|322386941|ref|ZP_08060565.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100] gi|321269223|gb|EFX52159.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100] Length = 1462 Score = 59.2 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 +++ + EF +F + + +AHNA FDVGF+N +R + ++ Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPQITQPVIDTLEF 539 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 ++ + + + H + + A LL + N Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T+ +K V + ++ +++ Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624 >gi|239638049|ref|ZP_04679008.1| exonuclease [Staphylococcus warneri L37603] gi|239596332|gb|EEQ78870.1| exonuclease [Staphylococcus warneri L37603] Length = 184 Score = 59.2 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V+++D T TF + PN S + + +HGI E Sbjct: 6 FVALDFET--ANGKRTSICSVGMVKVIDNQIT-ETFHTLVNPND-YFSEQNINVHGIYPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+FS +F F ++ +V + + + L Sbjct: 62 DVASSPNFSYVFPYMMQFIDQLPVVAHNAAFDMNVLHQSIQDIGLETPHLTYFCSYQLAK 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + H + + H AL D+ + + +++ + Sbjct: 122 RTVQSHRYGLKHMMDFYQL-----DFHGHHDALNDAKACAMITYRLLKHYDDL 169 >gi|257454452|ref|ZP_05619714.1| ribonuclease T [Enhydrobacter aerosaccus SK60] gi|257448218|gb|EEV23199.1| ribonuclease T [Enhydrobacter aerosaccus SK60] Length = 242 Score = 59.2 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 72/221 (32%), Gaps = 19/221 (8%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP--- 50 M N+ R +V D+ET G + K D ++EI + +L + P Sbjct: 8 MTIANRFRNYLPVVVDVETAGFNPKTDALLEIACIPILMDDTGLFYPGEAVNAHIEPFEG 67 Query: 51 --------NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 +P + I ++ + HNA FD Sbjct: 68 ANLEARALQFTGINPHSPMRKAIAEDEKTAIRRIFKYLKTVRQSTQCTKCILVGHNAHFD 127 Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGAL 161 + F+NA ++R N L + + + CK G+ H AL Sbjct: 128 LSFLNALIERTNSKNQSQFHQFSVLDTVTLSALAFGQTVLARACKLAGLEFDGNEAHSAL 187 Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPN 202 D+ ++++ ++ + ++E + + ++ + Sbjct: 188 YDTQKTAELFCYILNNYPMLTPNLASDEAKDEEYDEPQDSD 228 >gi|91215241|ref|ZP_01252213.1| DNA Pol III Epsilon Chain [Psychroflexus torquis ATCC 700755] gi|91186846|gb|EAS73217.1| DNA Pol III Epsilon Chain [Psychroflexus torquis ATCC 700755] Length = 256 Score = 59.2 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 6/171 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD+ETTG++ DRI+EI +++ + + ++ + P G E +HGI+DE + Sbjct: 11 FFDLETTGINISKDRIVEISILKVFENNN-KESYTWKVNP-GIPIPKETTAIHGISDEDV 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++P F + + + N L+ L +D +I Sbjct: 69 VNEPKFDELAPKINAMIKGCDLGGYNSNRFDIPLLAEEMLRTGIDFDLKKINAVDVQTIF 128 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + ++ H A D++ +V + + Sbjct: 129 HK----KEKRTLEAAYKFYCDKDLTDAHSAEADTNATYEVLKSQLDRYPDL 175 >gi|262368659|ref|ZP_06061988.1| ribonuclease T [Acinetobacter johnsonii SH046] gi|262316337|gb|EEY97375.1| ribonuclease T [Acinetobacter johnsonii SH046] Length = 219 Score = 59.2 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 66/197 (33%), Gaps = 16/197 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-----------NGRK 54 +V D+ET G +++ D ++EI A+ ++ + P + Sbjct: 23 VVVDVETAGFNAQTDALLEIAAIPIIYNEEGQFVPGPAHHAHINPFEGANLDRRSLDFIG 82 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P + ++ +E N +A + HNA FD+GF+ A + R Sbjct: 83 IDPFNPMRMAMAEDEKTALKRIFKAVNEVRRQQNCTHAVLVGHNAHFDLGFVQAAIARTG 142 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P + + C + GI R H AL D+ ++++ Sbjct: 143 TKNQNPFHSFSVFDTVTLSAVMFGQTVLAKSCIQAGIEFDGREAHSALYDTQKTAELFCY 202 Query: 174 MMVGGSQINFGFKTNED 190 ++ + + Sbjct: 203 ILNKLAPHLLDTLVADQ 219 >gi|149011144|ref|ZP_01832449.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP19-BS75] gi|147764780|gb|EDK71710.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP19-BS75] Length = 1463 Score = 59.2 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|15902295|ref|NP_357845.1| DNA polymerase III PolC [Streptococcus pneumoniae R6] gi|116515846|ref|YP_815772.1| DNA polymerase III PolC [Streptococcus pneumoniae D39] gi|32469721|sp|Q8DRA5|DPO3_STRR6 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|122279342|sp|Q04MH6|DPO3_STRP2 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|15457800|gb|AAK99055.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae R6] gi|116076422|gb|ABJ54142.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae D39] Length = 1463 Score = 59.2 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|325697436|gb|EGD39322.1| DNA polymerase III PolC [Streptococcus sanguinis SK160] Length = 1462 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 +++ + EF +F + + +AHNA FDVGF+N +R + ++ Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 ++ + + + H + + A LL + N Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T+ +K V + ++ +++ Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624 >gi|296135545|ref|YP_003642787.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] gi|295795667|gb|ADG30457.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] Length = 469 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 4/100 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG + DRI E+ + + + + L P G++ P +L GI D Sbjct: 5 YVLLDLETTGSNPVLDRITEVAVMRVEQGEVVAK-WSRLLNP-GQRIPPFIQQLTGIDDA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 + P+F + E + A +AHN +FD GF+ Sbjct: 63 MVAGAPAFGEVLPELLAVLDG--AVLVAHNVRFDHGFLKQ 100 >gi|168576299|ref|ZP_02722182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae MLV-016] gi|307066950|ref|YP_003875916.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae AP200] gi|183577861|gb|EDT98389.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae MLV-016] gi|306408487|gb|ADM83914.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae AP200] Length = 1463 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|168493969|ref|ZP_02718112.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC3059-06] gi|183576230|gb|EDT96758.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC3059-06] gi|332077575|gb|EGI88036.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA41301] Length = 1463 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|168484148|ref|ZP_02709100.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1873-00] gi|172042563|gb|EDT50609.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1873-00] Length = 1463 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|149006027|ref|ZP_01829756.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP18-BS74] gi|147762383|gb|EDK69344.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP18-BS74] Length = 1463 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|146328835|ref|YP_001209227.1| ribonuclease T [Dichelobacter nodosus VCS1703A] gi|146232305|gb|ABQ13283.1| ribonuclease T [Dichelobacter nodosus VCS1703A] Length = 206 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 15/185 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-----RTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G D + D ++E+ AV L+++++ TF + P G +P++LK++ Sbjct: 15 VVVDVETGGFDHEKDALLEVAAV-LVNFNEAGNLAPVETFHYHVKPFEGAHLNPDSLKIN 73 Query: 64 GITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 GI E+ + + + HNA FD+GFINA R N Sbjct: 74 GIDPFHPLRPALDEVTVAKQLFGAIREYQKAQSCTRSILVGHNAHFDLGFINALAARCNY 133 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +++ + L + K G HGA D+ L + ++ ++ Sbjct: 134 QHNPFHPFSSLDTVSLGALAYGQTVLARIAKAAGFEYDSERAHGAKYDTELTAQIFCHII 193 Query: 176 VGGSQ 180 S+ Sbjct: 194 NTWSE 198 >gi|15900208|ref|NP_344812.1| DNA polymerase III PolC [Streptococcus pneumoniae TIGR4] gi|111658314|ref|ZP_01409003.1| hypothetical protein SpneT_02000504 [Streptococcus pneumoniae TIGR4] gi|21263563|sp|Q97SQ2|DPO3_STRPN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|14971745|gb|AAK74452.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae TIGR4] Length = 1463 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|327468385|gb|EGF13870.1| DNA polymerase III PolC [Streptococcus sanguinis SK330] Length = 1462 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 +++ + EF +F + + +AHNA FDVGF+N +R + ++ Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 ++ + + + H + + A LL + N Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T+ +K V + ++ +++ Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624 >gi|319950859|ref|ZP_08024742.1| DNA polymerase III [Dietzia cinnamea P4] gi|319435472|gb|EFV90709.1| DNA polymerase III [Dietzia cinnamea P4] Length = 313 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 7/170 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ET+G+ DR++ + AV + D + F L P P + +HG+T Sbjct: 4 WVVVDVETSGMTPAVDRVLSVAAVVIGDDGEVVEEFATLLNPG---VDPGPVHVHGLTPA 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L KP FS + +E + + AHNA FD F+ AE +R P + Sbjct: 61 LLAGKPRFSDVAAELGRVLDGRTVV--AHNAAFDASFLAAEARRAGLAPPLERFVCTLDF 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 R ++ L++L +G+ H A D+ L+ V+ ++ Sbjct: 119 AGRLHLSTADLKLSTLAAHFGVRQRAA--HDAHDDALALAGVFAGLLEVA 166 >gi|307126490|ref|YP_003878521.1| DNA polymerase III subunit alpha, Gram-positive type [Streptococcus pneumoniae 670-6B] gi|306483552|gb|ADM90421.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae 670-6B] gi|332076720|gb|EGI87182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA17545] Length = 1463 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|262044634|ref|ZP_06017689.1| ribonuclease T [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038035|gb|EEW39251.1| ribonuclease T [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 215 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ ++ ++ + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDEFLK--------DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + + A +AHNA FD F +R Sbjct: 80 INPHDPQLGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACIAAGMPFDGAQAHSALYDTEQTAQLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|225860309|ref|YP_002741818.1| DNA polymerase III PolC [Streptococcus pneumoniae Taiwan19F-14] gi|298229634|ref|ZP_06963315.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada MDR_19F] gi|225727760|gb|ACO23611.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae Taiwan19F-14] Length = 1463 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|194397447|ref|YP_002036972.1| DNA polymerase III PolC [Streptococcus pneumoniae G54] gi|194357114|gb|ACF55562.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae G54] Length = 1463 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|168209034|ref|ZP_02634659.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens B str. ATCC 3626] gi|170712869|gb|EDT25051.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens B str. ATCC 3626] Length = 870 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 76/214 (35%), Gaps = 11/214 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IVFD+E+TG+D D II+I A++L + F+ FL K + Sbjct: 503 NIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLK---NKKPVKDSYYVHGFS 559 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + +++ + HN ++D+ + +EL+R N DTL Sbjct: 560 DEMLQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYDTL 619 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-------IKMMVGGSQ 180 I RR +P + N + H+ H A+ D ++ IK Sbjct: 620 DIYRRFYPGNINYKLENLSKV-YDTKHKPSHDAMDDIIATGELLVRAINEKIKETSMERM 678 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214 ++ + I+ KR L Sbjct: 679 ALMSKHLKAFTAISKKLNELFQIAESKRPYELVV 712 >gi|148988015|ref|ZP_01819478.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP6-BS73] gi|147926479|gb|EDK77552.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP6-BS73] Length = 1463 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|332653929|ref|ZP_08419673.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae bacterium D16] gi|332517015|gb|EGJ46620.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae bacterium D16] Length = 236 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 61/170 (35%), Gaps = 8/170 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLC-PNGRKNSPEALKLHG 64 +VFD ET+GLD ND+IIE+ A+ + + F+ P G + L G Sbjct: 15 VVFDTETSGLDFDNDQIIELAALRVERTATGGLRIAGKMDTFIKLPEGETLPENIVSLTG 74 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITDE L+ + + + + + + L R K Sbjct: 75 ITDERLQTEGVQPAKAASQIAKLMQNGPTLMIAHNAQFDACFLRGLLRGQKVGRIDWLDS 134 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ RR +P + G ++ H A+ D L +V M Sbjct: 135 LTVYKDRRAYPHKLANAIIAYDLTGK---VQNSHRAIDDVLALFEVLKAM 181 >gi|298256053|ref|ZP_06979639.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502091|ref|YP_003724031.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|298237686|gb|ADI68817.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] Length = 1463 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|182683255|ref|YP_001835002.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14] gi|303255179|ref|ZP_07341253.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455] gi|182628589|gb|ACB89537.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14] gi|301801215|emb|CBW33889.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV200] gi|302597812|gb|EFL64884.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455] Length = 1463 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 7/211 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185 R+ L L KR+G+ H + + A LL ++ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + +K + + ++ +++ I Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631 >gi|104773929|ref|YP_618909.1| hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423010|emb|CAI97696.1| Hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 290 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 19/185 (10%) Query: 3 RKNKMR----------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52 + KMR + DIETTGL+++ D+I+ IGAV+ F + Sbjct: 110 KAEKMRASAAAAKPKGFVAVDIETTGLNTETDQILSIGAVK-----HDGTEFYRLIK-QD 163 Query: 53 RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + ++L GIT E L + E F + +N +FD F+N + ++ Sbjct: 164 IDVPKQIVELTGITSEMLSKEGVPLQDALEELTDFVGNVPI-VGYNFRFDSAFLNRDYRK 222 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 L + R++ L ++ YGI H A+ D+ ++ + Sbjct: 223 CGMQELKNEIKDLLPVVKRKEKFLDNYKLQTVLSNYGIENKVP--HNAVSDARATKELAM 280 Query: 173 KMMVG 177 K++ Sbjct: 281 KLIKN 285 >gi|221135181|ref|ZP_03561484.1| ribonuclease T [Glaciecola sp. HTCC2999] Length = 212 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G +++ D ++EI AV + ++ + P G P A++ +G Sbjct: 17 VIIDVETAGFNAQTDALLEIAAVTVRMDEAGMLHPDQEIHYHINPFEGANIEPAAIEFNG 76 Query: 65 IT--------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + S S+ N Q + +AHNA FD+ F+NA L R N Sbjct: 77 IKVDCALRGAVDETEAMKGLSKAISKLQKAANCQRSVIVAHNASFDMSFVNAALARTNVK 136 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + + L C+ I + HGAL D+ ++++ MM Sbjct: 137 RSPFHPFVSFDTTSLAALTLGQTVLVKACEAANIAFDQKQAHGALYDAQRTAELFCFMMN 196 Query: 177 GGSQIN 182 + Sbjct: 197 RYQSLG 202 >gi|237654602|ref|YP_002890916.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|237625849|gb|ACR02539.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 502 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 8/163 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 DIETTG ++ + I EIG V++ + R + + P R +L GI D+ + Sbjct: 14 FVDIETTGGPAQRESITEIGIVQVDEDGV--REWSTLVRPASR-IPETIQRLTGIDDDMV 70 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D P F I E +D + ++AHNA+FD G + A +R D LS Sbjct: 71 ADAPRFEDIADEVFDRLDG--RLFVAHNARFDHGHLRAAFRRAGLDMRPQVLCTVKLS-R 127 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R R+ L+ L +R+G+ +H AL D+ LL + K Sbjct: 128 RLFPDHRRHGLDHLIERHGLA--VADRHRALGDARLLWQFWQK 168 >gi|189460117|ref|ZP_03008902.1| hypothetical protein BACCOP_00753 [Bacteroides coprocola DSM 17136] gi|189433159|gb|EDV02144.1| hypothetical protein BACCOP_00753 [Bacteroides coprocola DSM 17136] Length = 258 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 71/200 (35%), Gaps = 12/200 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + DRI+EI +++ + ++ ++T + + P + +HGI DE Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKVYPNGNEESKTMR--VNPEMH-IPEASTAIHGIHDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F I + + N + L+ L + ID Sbjct: 67 DVADCPTFKEIAKDIARDLEGADIAGFNSNRFDVPVLVEEFLRAGIDIDLTKRKFIDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + S ++ + H A D+ +V + N Sbjct: 127 IYHK----LEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLKAQLDHYP----DVLEN 178 Query: 189 EDRFFKEEKKTVPNISLLKR 208 + +F E N+ R Sbjct: 179 DIKFLSEYSTYSKNVDFAGR 198 >gi|307705682|ref|ZP_07642529.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK597] gi|307620762|gb|EFN99851.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK597] Length = 1463 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 7/211 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185 R+ L L KR+G+ H + + A LL ++ I+ Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVIDLARL 600 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + +K + + ++ +++ I Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631 >gi|307710886|ref|ZP_07647313.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK321] gi|307617331|gb|EFN96504.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK321] Length = 1463 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPRISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|238749424|ref|ZP_04610929.1| Ribonuclease T [Yersinia rohdei ATCC 43380] gi|238712079|gb|EEQ04292.1| Ribonuclease T [Yersinia rohdei ATCC 43380] Length = 226 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L + ++T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAQTDALLEIAAVTLRMDKDGWLLPDQTLHFHVEPFEGANLQPEALAFNG 90 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A +AHNA FD F+ A +R + Sbjct: 91 IDPTNPLRGAVSEYNALHAIFTAIRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASLK 150 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D+ + ++ +++ Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLTAGIPFDSSQAHSALYDTMQTATLFCELVN 210 Query: 177 GGSQIN 182 ++ Sbjct: 211 RWKKLG 216 >gi|225858122|ref|YP_002739632.1| DNA polymerase III PolC [Streptococcus pneumoniae 70585] gi|225720766|gb|ACO16620.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae 70585] Length = 1463 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 7/211 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185 R+ L L KR+G+ H + + A LL ++ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + +K + + ++ +++ I Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631 >gi|332204293|gb|EGJ18358.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA47901] Length = 1463 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 7/211 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185 R+ L L KR+G+ H + + A LL ++ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + +K + + ++ +++ I Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631 >gi|148656137|ref|YP_001276342.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1] gi|148568247|gb|ABQ90392.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1] Length = 233 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 2/67 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLC-PNGRKNSPEALKLHGITDE 68 V D+ETTGL+ + D ++ IG V++ D ++ + + P+ +PEA+++HG+ + Sbjct: 40 VIDVETTGLNPRRDALLAIGLVDIDDGRIRMDQRWYTLVRPPDDAPVNPEAIRVHGLLPQ 99 Query: 69 FLKDKPS 75 ++ P Sbjct: 100 DVEQAPP 106 >gi|301793541|emb|CBW35916.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV104] Length = 1463 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 7/211 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185 R+ L L KR+G+ H + + A LL ++ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + +K + + ++ +++ I Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631 >gi|149372989|ref|ZP_01891945.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] gi|149354349|gb|EDM42916.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] Length = 472 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 77/201 (38%), Gaps = 8/201 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG R+ EI + + + + + P L GITD+ + Sbjct: 10 VIDVETTGG-VGQGRMTEICIITVENMEIV-DVWSSLINPE-IYIPQHITALTGITDQMV 66 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D P F + + + ++A ++AHN FD GF+ E I LS Sbjct: 67 TDAPRFCDVAAIIEE--KTRDAIFVAHNVNFDYGFLKKEFDLIGASFSRKKLCTVRLSRK 124 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 L+ LC+ GI+ H A D+ + ++++++ S NF N Sbjct: 125 LIPG-LPSYSLSKLCRSIGIS--LLDAHRAEADTRATTTLFLQLLEKDSVANFEVFLNFL 181 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 E P+I+ ++ Sbjct: 182 NKSSREATLPPHINTEDFNRL 202 >gi|295136252|ref|YP_003586928.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87] gi|294984267|gb|ADF54732.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87] Length = 1462 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 72/242 (29%), Gaps = 23/242 (9%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + D R I+I + + P G + Sbjct: 2 YLIFDTETTGLPKRWDAPLTDSDNWPRCIQIAWQLHDEMGNLIEHQDYLVRPEGFDIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-- 116 A ++HGI+ + +++ E ++ + + N FDV + AEL R D Sbjct: 62 AERVHGISTDLAREEGISLEEMLEKFNEALGKTKFIVGQNLGFDVNIMGAELHRAGMDSQ 121 Query: 117 -------PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + I + + + Y H A D + Sbjct: 122 LLELPVLDTCTETTAEMCRIPGGRGGKFKLPTLTELHEYLFDEPFGEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 +++++ S F + + + ++ K ++ Sbjct: 182 CFLELVRKRSYSAEELNAAPGYFEDYIEANPEPFQPIGLKHINLKKASE----AIRKRLE 237 Query: 230 TL 231 L Sbjct: 238 KL 239 >gi|255014610|ref|ZP_05286736.1| putative exonuclease/DNA polymerase III epsilon c [Bacteroides sp. 2_1_7] gi|293373643|ref|ZP_06619990.1| exonuclease [Bacteroides ovatus SD CMC 3f] gi|292631298|gb|EFF49929.1| exonuclease [Bacteroides ovatus SD CMC 3f] Length = 163 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 65/170 (38%), Gaps = 8/170 (4%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+ D ET +++ + +G V + D T TF + P + ++HG+ Sbjct: 1 MKDFAAIDFET--ANNQRSSVCSVGIVIVRDGEIT-DTFYSLINPEPNYYNYWCSQVHGL 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + + P F ++ + +AHN FD G + A + D Sbjct: 58 TRKDTDNAPVFPEVWRQIEPLIEG--LPLVAHNRPFDEGCLKAVFRVYQMDYPCYEFYDT 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + R + L+++ + G ++ H AL D+ + + +++ Sbjct: 116 LSASRRALPCLPNHQLHTVAEACG--YQLKNHHHALADAEACAWIAREIL 163 >gi|239928032|ref|ZP_04684985.1| DNA polymerase III [Streptomyces ghanaensis ATCC 14672] gi|291436367|ref|ZP_06575757.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291339262|gb|EFE66218.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 631 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 9/175 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ET+GL ++ DR++ + + + D +T F L P P +++HG+T E L Sbjct: 23 VDVETSGLMARRDRVLSVAVITIGPDGEQTGE-FSTLLNPG---CDPGPVEVHGLTVERL 78 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P+F + +AHNA+FD F+ E R R+ Sbjct: 79 QGAPTFDQVAGRIGAMLQG--RVLVAHNAQFDYDFLAHEFARARMWLPVSQRLCTLALNR 136 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + P+ L +L YG++ H AL D+ +L+ + + ++++ Sbjct: 137 QVDPPTDDMKLGTLAAHYGVSRQRA--HDALDDTRVLAGILRASLREAARLDLPL 189 >gi|146308744|ref|YP_001189209.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp] gi|145576945|gb|ABP86477.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp] Length = 199 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 7/168 (4%) Query: 7 MRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M I V D ETTG+ R EIG + D +R +Q + +G P +L GI Sbjct: 1 MESIAVIDFETTGVSPSQARATEIGVAIIEDGRIVDR-YQSLMN-SGAWVPPFIEQLTGI 58 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLDPSRI 123 ++ L+ P + +E DF E +AHNA FD F +AEL R + + Sbjct: 59 SNAMLRKAPPSEQVMNEVADFIGE--RPLLAHNASFDQKFWDAELARVRRRRSQPFACSL 116 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + + +LN+ +HR+ A + ++L ++ Sbjct: 117 LLSRRLLPEAPSHKLGNLNAWAGLPDTGRAHRALADAEMAANLTLHLF 164 >gi|322377559|ref|ZP_08052049.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M334] gi|321281324|gb|EFX58334.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M334] Length = 1463 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185 R+ L L KR+G+ H + + A LL ++ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + +K + + ++ +++ I Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631 >gi|307707703|ref|ZP_07644182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis NCTC 12261] gi|307616201|gb|EFN95395.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis NCTC 12261] Length = 1463 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|260902236|ref|ZP_05910631.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|308110524|gb|EFO48064.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] Length = 236 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 4/167 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTG+D++ D+I+ IG V+L LD + + ++C A Sbjct: 52 FVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYICHGQFIKPETAQINGLTPQ 111 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + K P + + + + + +D + Sbjct: 112 DLAKGLP-LDEGMNRLLERITGKVVLAHGCCIEKAFIHAYFSSRYQVEDFPAYFIDTLQI 170 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYI 172 S + H A D+ +++++ Sbjct: 171 EKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAELFL 217 >gi|256828365|ref|YP_003157093.1| DNA polymerase III subunit epsilon [Desulfomicrobium baculatum DSM 4028] gi|256577541|gb|ACU88677.1| DNA polymerase III, epsilon subunit [Desulfomicrobium baculatum DSM 4028] Length = 244 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 13/174 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D E TGL ++ + I+ IGAV + + +F V + P + +H IT E Sbjct: 48 VLDTELTGLSARREEIVSIGAVRVRGLAIVPGESFSVLVRP-SIPLPKTSTLIHRITPEA 106 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR---IIDT 126 + P + + E +F + H+ D+ F+N ++ + PL + Sbjct: 107 IAQAPPLAEVLPELIEFCKG--TLIVGHHVGLDMSFLNRACRKNHGQPLANPCLDTMRMA 164 Query: 127 LSIARRKHPSSRNDLNSLCKR------YGITISHRSKHGALLDSHLLSDVYIKM 174 + ++ PS N + + + H AL D+ + ++I + Sbjct: 165 MLWREKRTPSHYEQFNLSISYVLTDLAHEFDLPRFTAHEALGDALQTAYLFIYL 218 >gi|221231173|ref|YP_002510325.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669] gi|220673633|emb|CAR68120.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669] Length = 1463 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|329942403|ref|ZP_08291213.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Chlamydophila psittaci Cal10] gi|332287044|ref|YP_004421945.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC] gi|313847640|emb|CBY16628.1| putative DNA polymerase III epsilon chain [Chlamydophila psittaci RD1] gi|325507354|gb|ADZ18992.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC] gi|328815313|gb|EGF85301.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Chlamydophila psittaci Cal10] gi|328914277|gb|AEB55110.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC] Length = 249 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D E TGLD K DRIIE A+ + + + P+ R S E+ ++H I+D Sbjct: 9 FVCLDCEMTGLDVKKDRIIEFAAIRFTFDRVI-DSMETLINPD-RVISAESQRIHHISDA 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97 LKD+P + +F + F E + Sbjct: 67 MLKDQPRIAEVFPKIKSFLKEGDYIVGHS 95 >gi|309807268|ref|ZP_07701238.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 03V1-b] gi|308166328|gb|EFO68537.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 03V1-b] Length = 233 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + N ++ ++ Sbjct: 69 QEAAKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFDGKAIDTVELA 128 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175 IA PS + + HR+ AL+ + +L + I+M+ Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIDKIEML 178 >gi|306830212|ref|ZP_07463396.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249] gi|304427738|gb|EFM30834.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249] Length = 1463 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185 R+ L L KR+G+ H + + A LL ++ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + +K + + ++ +++ I Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631 >gi|169833032|ref|YP_001693801.1| DNA polymerase III PolC [Streptococcus pneumoniae Hungary19A-6] gi|168995534|gb|ACA36146.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae Hungary19A-6] Length = 1463 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185 R+ L L KR+G+ H + + A LL ++ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + +K + + ++ +++ I Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631 >gi|295133359|ref|YP_003584035.1| exonuclease domain-containing protein [Zunongwangia profunda SM-A87] gi|294981374|gb|ADF51839.1| exonuclease domain-containing protein [Zunongwangia profunda SM-A87] Length = 475 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 7/171 (4%) Query: 7 MRKI---VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 M+++ + DIETTG K ++I EI V ++ + + + P G + L Sbjct: 1 MKEVKFAIIDIETTGGGIKGNKITEI-CVLVVQNGEVINEYTSLVNP-GTEIPLYIETLT 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 I D+ L D P FS I S+ + ++ ++AHN FD I AE + +N Sbjct: 59 NINDKMLVDAPKFSEIASKIQE--ITRDCIFVAHNVNFDYNIIKAEFESLNLSFQRKRLC 116 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L+ S + N + +G + L +I + Sbjct: 117 TVRLAKKLIPGLFSYSLGNLCTSINIPHDNKHRAYGDCEATVTLFKRFIDL 167 >gi|218514224|ref|ZP_03511064.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3] Length = 312 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 63/187 (33%), Gaps = 15/187 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ ++D IIEIGAV D ++ L R E +L GI Sbjct: 61 VVLDTETTGLNHRSDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIPREVTRLTGI 120 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD ++ + I E IAHNA FD F A Sbjct: 121 TDAMVEGQ----VIDIRSLSDLIEPADLIIAHNAGFDRPFCEAFSPLFTGKAW------- 169 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 S++ + + L G H A+ D H L ++ + G Sbjct: 170 ACSVSEIDWSARGFEGTKLGYLVGQAGYFHEGHRAVDDCHALLEILDRQQGEGESPFAEL 229 Query: 186 KTNEDRF 192 R Sbjct: 230 YRASQRS 236 >gi|319901725|ref|YP_004161453.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes P 36-108] gi|319416756|gb|ADV43867.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes P 36-108] Length = 256 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 8/173 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + +DRI+EI +++ + ++ +T + + P EA +HGI DE Sbjct: 10 VFFDLETTGTNINSDRIVEICYLKVYPNGNEEAKT--MRINPEMH-IPAEASAVHGIYDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+F + + + N L+ + + +D Sbjct: 67 DVAKCPTFKEVARNIANDIEGSDLAGFNSNRFDIPVLAEEFLRAGVDIDMSRRKFVDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 I + S ++ + H A D+ +V + + + Sbjct: 127 IFHK----MEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLMAQLDRYEDL 175 >gi|116513938|ref|YP_812844.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093253|gb|ABJ58406.1| 3'-5' exonuclease with to CRISPR-associated protein from COG1343 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 290 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 9/173 (5%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R + DIETTGL++++D+I+ IGAV+ F + + ++L G Sbjct: 122 KQKRFVAVDIETTGLNTESDQILSIGAVK-----HDGIEFYRLIK-QDIDVPKQIVELTG 175 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT E L + E F + +N +FD F+N + ++ L Sbjct: 176 ITSEMLSKEGVPLQDALEELTDFVGNVPI-VGYNFRFDSVFLNRDYRKCGMQELKNEIKD 234 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + RR+ L ++ YGI H A+ D+ ++ +K++ Sbjct: 235 LLPVVKRREKFLDNYKLQTVLSNYGIENKVP--HNAVSDARATKELAMKLIKN 285 >gi|238853316|ref|ZP_04643700.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 202-4] gi|300362992|ref|ZP_07059162.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri JV-V03] gi|238834110|gb|EEQ26363.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 202-4] gi|300353042|gb|EFJ68920.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri JV-V03] Length = 320 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 53/169 (31%), Gaps = 3/169 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ETTGL DRI E+G +++ TF + P + DE Sbjct: 36 IDVETTGLSPYRDRITEMGGLKVRHGEVVA-TFSELVKFPDNNKVPAFITKLNGIDEAAI 94 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 ++ + + + +N FD+ F+ ++ + L+ + Sbjct: 95 EEKGLPVQEAIKKYREFIGSDPIVGYNVNFDLNFVYDLAEKYHLTVLNNDYVDVYRLARS 154 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 N L R I +H L D V+ + Q Sbjct: 155 FYPQERHNRLLDCMHRMNIA--ENQEHRGLDDCLDTKKVFDEFHKLFKQ 201 >gi|322375786|ref|ZP_08050297.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C300] gi|321279054|gb|EFX56096.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C300] Length = 1463 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F +N +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFC--KNTVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|293364694|ref|ZP_06611411.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037] gi|307702942|ref|ZP_07639889.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus oralis ATCC 35037] gi|291316144|gb|EFE56580.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037] gi|307623335|gb|EFO02325.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus oralis ATCC 35037] Length = 1463 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|89072943|ref|ZP_01159490.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34] gi|89051161|gb|EAR56617.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34] Length = 249 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL++ D II +G V ++ ++ + P + +++ +HGIT Sbjct: 59 FVALDFETTGLNANKDDIISVGLVPFNINRIFCKQSQHWVVKPKAK-LDEDSVIIHGITH 117 Query: 68 EFLKDKPSFSS 78 ++ P Sbjct: 118 SDVQTAPDIRR 128 >gi|149017968|ref|ZP_01834427.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP23-BS72] gi|147931532|gb|EDK82510.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP23-BS72] Length = 1463 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|328944876|gb|EGG39036.1| DNA polymerase III PolC [Streptococcus sanguinis SK1087] Length = 1462 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ + EF +F + + +AHNA FDVGF+N +R + I Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+ I + H H A D+ + Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEH--HHMANYDAEATGRLL 580 >gi|322388734|ref|ZP_08062331.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779] gi|321140353|gb|EFX35861.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779] Length = 1464 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 426 YVVFDVETTGLSAIYNDLIQVAASKMYKGNIIAE-FDEFINP-GHPLSAFTTELTGITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 484 HVKNAKPLVQVLKEFQEFCKD--TVLVAHNASFDVGFMNANYERHGLPKITQPVIDTLEF 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 582 >gi|307131423|ref|YP_003883439.1| ribonuclease T (RNase T) [Dickeya dadantii 3937] gi|306528952|gb|ADM98882.1| ribonuclease T (RNase T) [Dickeya dadantii 3937] Length = 225 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L + + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDETLHFHIEPFEGAILRPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + N +AHNA FD F+ A +R Sbjct: 80 IDPANPLRGAVSEYEALHEIFKAVRKGIKDLNCNRGIIVAHNATFDHSFLMAAAERCGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C I H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACIAAEIPFDASQAHSALYDTERTAQLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRMG 205 >gi|303259383|ref|ZP_07345360.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293] gi|303261138|ref|ZP_07347087.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292] gi|303263466|ref|ZP_07349389.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397] gi|303265758|ref|ZP_07351656.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457] gi|303267811|ref|ZP_07353613.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458] gi|302637975|gb|EFL68461.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292] gi|302639317|gb|EFL69775.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293] gi|302642507|gb|EFL72852.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458] gi|302644666|gb|EFL74915.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457] gi|302647239|gb|EFL77463.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397] Length = 1463 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|270292055|ref|ZP_06198270.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M143] gi|270279583|gb|EFA25425.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M143] Length = 1463 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|262283487|ref|ZP_06061253.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA] gi|262260978|gb|EEY79678.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA] Length = 1462 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 84/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 +++ S + EF +F + + +AHNA FDVGF+N +R + ++ Sbjct: 482 HVRNAKSLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 ++ + + + H + + A LL + N Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T+ +K V + ++ +++ Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624 >gi|255531786|ref|YP_003092158.1| exonuclease RNase T and DNA polymerase III [Pedobacter heparinus DSM 2366] gi|255344770|gb|ACU04096.1| Exonuclease RNase T and DNA polymerase III [Pedobacter heparinus DSM 2366] Length = 328 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 75/201 (37%), Gaps = 9/201 (4%) Query: 2 IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEA 59 ++ N R + F D+ETTG++ DRI+EI ++ + D S+ +T + + P A Sbjct: 1 MKLNLKRPLAFFDLETTGVNVGADRIVEIAILKAMPDGSELIKTMR--INPE-MPIPLYA 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGI DE + ++P F + +E DF + + N + L+ + Sbjct: 58 SLIHGIYDEHIANEPIFKEVATELADFIGDADLAGYNSNRFDIPVLLEEFLRAGVDFDMS 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + +D +I + ++ + H A D V + + Sbjct: 118 DRKFVDVQNIFHQ----MEQRTLRAAYKFYCNKDIINAHSAEADITATYQVLLAQIERYK 173 Query: 180 QINFGFKTNEDRFFKEEKKTV 200 I+F K + Sbjct: 174 DIDFEDKQGNISRPVQNDVEA 194 >gi|227536554|ref|ZP_03966603.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] gi|227243631|gb|EEI93646.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] Length = 316 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 6/181 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD+ETTG++ DRI+EI ++++ + P G E+ HGI DE + Sbjct: 11 FFDLETTGVNIPLDRIVEISILKVMPDGN-KEVLTRRINP-GMPIPAESSMFHGIYDEDV 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD PSF + E DF + + N + L+ L+ +D +I Sbjct: 69 KDLPSFKELGQEIADFIGDADLAGYNSNKFDVPMLMEEFLRANVDFSLEGRNFVDVQNIF 128 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 + ++ + H A D +V + + + K Sbjct: 129 HQ----MEQRTLKAAYKFYCDQDLNNAHTAEADVTATYEVLKAQLSRYEDVVYEDKHGNK 184 Query: 191 R 191 Sbjct: 185 S 185 >gi|307297316|ref|ZP_07577122.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916576|gb|EFN46958.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 182 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNG 52 M +V D ETTG++ + ++IE+ V + ++ + F + P Sbjct: 1 MEFVVIDTETTGMNPYRGAKLIEVAGVRVKNWELCRDDFFDSLIDPEC 48 >gi|301300766|ref|ZP_07206950.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851616|gb|EFK79316.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 929 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 9/186 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 MI++ V D+ETTG D+II+ + + +K F + P G E Sbjct: 1 MIKERI--YAVVDLETTGPKQDGSDKIIQFSC-DFVQSNKIVNHFSTLINP-GMPIPVEV 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 KL GI D+ ++ P F + + AHN FD F+++EL+R L+ Sbjct: 57 KKLTGIKDKDVRYAPYFDEVAGTIYAMLQNTTFV--AHNVNFDYSFLSSELERAGYPELE 114 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + L + K ++ H H A D+ +++ I + Sbjct: 115 LPMMDTVQLTQIIYPTLVSYRLIDISKYLQLSHIHP--HKADSDTKATAELLINLKKRIE 172 Query: 180 QINFGF 185 Sbjct: 173 TFPLIL 178 >gi|168179984|ref|ZP_02614648.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum NCTC 2916] gi|182669095|gb|EDT81071.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum NCTC 2916] Length = 855 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 4/176 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+E+TG+++ D I++I +++ + + +FQ FL P + Sbjct: 494 NVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLTPKKSVGDSYLVH-GFSDQ 552 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ + + +F +F + + HN FD+ +N+EL+R++ + DTL Sbjct: 553 FLKENGENKKVVLKDFLEFIKD--TVIVGHNVAFDISILNSELERLSLEKASFKTYYDTL 610 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IARR +PS N + +S H A+ D DV + M+ + Sbjct: 611 DIARRFYPSLTNHKLETLSKL-FNTETKSSHDAMDDILATKDVLMAMLKEKVKPTI 665 >gi|149001610|ref|ZP_01826583.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69] gi|147760068|gb|EDK67057.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69] Length = 1113 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNAAFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|315611914|ref|ZP_07886833.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296] gi|315316092|gb|EFU64125.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296] Length = 1463 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|328469916|gb|EGF40827.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 10329] Length = 236 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 4/167 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTG+D++ D+I+ IG V+L LD + + ++C A Sbjct: 52 FVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYICHGQFIKPETAQINGLTPQ 111 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + K P + + + + + +D + Sbjct: 112 DLAKGLP-LDEGMNRLLERITGKVVLAHGCCIEKAFIHAYFSSRYQVEDFPAYFVDTLQI 170 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYI 172 S + H A D+ +++++ Sbjct: 171 EKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAELFL 217 >gi|257483040|ref|ZP_05637081.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624800|ref|ZP_06457754.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650623|ref|ZP_06481966.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250] gi|298489203|ref|ZP_07007222.1| Exonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156285|gb|EFH97386.1| Exonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330871170|gb|EGH05879.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330891299|gb|EGH23960.1| exonuclease [Pseudomonas syringae pv. mori str. 301020] gi|331011724|gb|EGH91780.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 237 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 68/200 (34%), Gaps = 6/200 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ET+GL+ D+++ IGAV + D + + F+ L + + + + Sbjct: 42 RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVLIHGLAP 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +P+ + + + + +A FD ++ L+ L Sbjct: 102 SAIAAGSEPAEALLDFME----FVGESPILGFHAPFDQHMLSRALKESLDYRLRHPFFDA 157 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++ + +H A D+ + +++ + + + Sbjct: 158 AEIAPMLCEQANLRHAGLDDWTQFFGLHAEERHNASADALVTAELALILFSHARRQQIDS 217 Query: 186 KTNEDRFFKEEKKTVPNISL 205 + + ++ + S Sbjct: 218 PRLLEERLGQWRRRKQSHSF 237 >gi|255038895|ref|YP_003089516.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM 18053] gi|254951651|gb|ACT96351.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM 18053] Length = 174 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 65/178 (36%), Gaps = 8/178 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG RI EI AV D ++ F + P P +L GI +E Sbjct: 2 YAIVDIETTGGG-GTSRITEI-AVFRHDGARIVDFFHSLINPE-IYIPPFITRLTGIDNE 58 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P+F + + AHNAKFD GFI + R + Sbjct: 59 MVKDAPTFYEVQDAVRAMTRDAWFV--AHNAKFDYGFIK---REFGALDEYFQRDLLCTV 113 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 RK + + I ++H A D+ ++ K+++ Q Sbjct: 114 QLSRKIFPGLKSYSLGNLCESLEIMIENRHRAHGDAEATVRLFEKLLLHDRQKLIPMD 171 >gi|148983680|ref|ZP_01816999.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP3-BS71] gi|147923827|gb|EDK74939.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP3-BS71] gi|301799415|emb|CBW31952.1| DNA polymerase III PolC-type [Streptococcus pneumoniae OXC141] Length = 1463 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185 R+ L L KR+G+ H + + A LL ++ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + +K + + ++ +++ I Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631 >gi|126695985|ref|YP_001090871.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9301] gi|126543028|gb|ABO17270.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9301] Length = 259 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 70/229 (30%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + ++ D ETTGLD D +IEIG + + +F + N + Sbjct: 37 KILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNNKAEYVNGISAEVT 96 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + +D +F + DF +AHN +FD + S Sbjct: 97 NISQPWEDGLNFFLKLVDSSDFI-------VAHNVEFDKKWFGKGRLPKLNKKWICSLED 149 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVGGSQIN 182 S + +L + HR+ S + ++++ ++ Sbjct: 150 INWSFQKSLKNRPSVTDLALSFSIPVWNLHRALSDCFYISEVFKKCDNLEELLLKATEPR 209 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 F +K + K ++T +E D ++ L Sbjct: 210 FLYKALISYEDRSLAKNAGFRWNSPVQGAWSRKLTTDEAKNLDFRVEIL 258 >gi|91070260|gb|ABE11179.1| putative DNA polymerase III, epsilon subunit [uncultured Prochlorococcus marinus clone HF10-11H7] Length = 259 Score = 58.8 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 69/230 (30%), Gaps = 12/230 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + ++ D ETTGLD D +IEIG + + +F + N + Sbjct: 37 KILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNNEAEYVNGISAEVT 96 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + +D F + DF +AHN +FD + S Sbjct: 97 NISQPWEDGLHFFLKLVDSSDFI-------VAHNVEFDKKWFGKGRLPKLNKKWICSLED 149 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVGGSQIN 182 S + +L + HR+ S + ++++ ++ Sbjct: 150 INWSFQKSLKTRPSVTDLALSFSIPVWNLHRALSDCFYISEVFKKCDNLEELLLKATEPR 209 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 F +K + K ++T +E D ++ L Sbjct: 210 FLYKALVSYEDRSLAKNAGFRWNSPVQGAWSRKLTTDEAKNLDFRVEILN 259 >gi|309809881|ref|ZP_07703731.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 2503V10-D] gi|308169833|gb|EFO71876.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 2503V10-D] Length = 233 Score = 58.4 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 5/170 (2%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + N ++ ++ Sbjct: 69 QEASKAQTFSFYAKKIQEILENTIFVAHNINFDLPFLNYELINAGLSPFAGKAIDTVELA 128 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMM 175 IA PS + + HR+ AL+ + +L + I+M+ Sbjct: 129 QIAFPTIPSYKLQDITNTLHIKHANPHRADSDALVTAKMLLKIIEKIEML 178 >gi|300773554|ref|ZP_07083423.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] gi|300759725|gb|EFK56552.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 316 Score = 58.4 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 6/181 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD+ETTG++ DRI+EI ++++ + P G E+ HGI DE + Sbjct: 11 FFDLETTGVNIPLDRIVEISILKVMPDGN-KEVLTRRINP-GMPIPAESSMFHGIYDEDV 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD PSF + E DF + + N + L+ L+ +D +I Sbjct: 69 KDLPSFKELGQEIADFIGDADLAGYNSNKFDVPMLMEEFLRANVDFSLEGRNFVDVQNIF 128 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 + ++ + H A D +V + + + K Sbjct: 129 HQ----MEQRTLKAAYKFYCDQDLNNAHTAEADVTATYEVLKAQLSRYEDVLYEDKHGNK 184 Query: 191 R 191 Sbjct: 185 S 185 >gi|238919999|ref|YP_002933514.1| ribonuclease T [Edwardsiella ictaluri 93-146] gi|238869568|gb|ACR69279.1| ribonuclease T, putative [Edwardsiella ictaluri 93-146] Length = 221 Score = 58.4 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D+ + ++EI AV + D +T++ + P G + SPEAL +G Sbjct: 20 VVIDVETAGFDANRNALLEIAAVTLRMNDDGWLETDQCLHFHIDPFEGAELSPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A +AHNA FD F+ A R Sbjct: 80 IDPHNPLRGAVSEYTALHAIFKMVRKGIKDQACNRAVVVAHNAHFDHSFLMAAAARAGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C I H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACISAQIPFDSAQAHSALYDTQQTATLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|90961663|ref|YP_535579.1| ATP-dependent helicase DinG [Lactobacillus salivarius UCC118] gi|90820857|gb|ABD99496.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius UCC118] Length = 929 Score = 58.4 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 9/186 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 MI++ V D+ETTG D+II+ + + +K F + P G E Sbjct: 1 MIKERI--YAVVDLETTGPKQDGSDKIIQFSC-DFVQSNKIVNHFSTLINP-GMPIPVEV 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 KL GI D+ ++ P F + + AHN FD F+++EL+R L+ Sbjct: 57 KKLTGIKDKDVRYAPYFDEVAGTIYAMLQNTTFV--AHNVNFDYSFLSSELERAGYPELE 114 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + L + K ++ H H A D+ +++ I + Sbjct: 115 LPMMDTVQLTQIIYPTLVSYRLIDISKYLQLSHIHP--HKADSDTKATAELLINLKKRIE 172 Query: 180 QINFGF 185 Sbjct: 173 TFPLIL 178 >gi|311896766|dbj|BAJ29174.1| putative exonuclease [Kitasatospora setae KM-6054] Length = 233 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 56/171 (32%), Gaps = 7/171 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+E TG R++E+ V+L +T R F + P G +HGI Sbjct: 4 YAVVDVEATGRSPWRHRVVEVAVVQLDAGLRTEREFATLVDPGG---PVGPTHVHGIAQA 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F I + + H+ D F+ E RI + Sbjct: 61 DVLGAPRFRQIAPRLLELLAG--RVLVGHHVTCDRAFLEREFARIGVALPQVPLLCTMRL 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 R+ + L++ G+ H AL D+ ++ G Sbjct: 119 ARRQLPEAGGYGLSACVDAAGLGWF--PAHTALGDARATVELLRHCRRTGG 167 >gi|325955495|ref|YP_004239155.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922] gi|323438113|gb|ADX68577.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922] Length = 466 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 69/182 (37%), Gaps = 7/182 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIET G + + I EI A+ L + + +Q + P + L GIT E Sbjct: 11 YAIVDIETNGSAAAHGGITEI-AIFLHNGKEIIDEYQTLVNPE-KPIPFHIQTLTGITPE 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P F + + + + + A ++AHN FD F+ ++ +D I Sbjct: 69 MLVDAPRFDEVAKDVYSYLEK--AIFVAHNVSFDFSFL---HKQFLDVGIDWKPIKLCTV 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 RK + + I +H A D+ + ++ +++ + + Sbjct: 124 RLARKIFPGYTSYSLGSLCKNLNIPLHDRHRAAGDAKATTILFEQLLQNDQERWIEKMSK 183 Query: 189 ED 190 + Sbjct: 184 TN 185 >gi|307709855|ref|ZP_07646304.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK564] gi|307619404|gb|EFN98531.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK564] Length = 1463 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLSKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|297530374|ref|YP_003671649.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp. C56-T3] gi|297253626|gb|ADI27072.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp. C56-T3] Length = 242 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 57/177 (32%), Gaps = 9/177 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++ D+ETTG + D I+ + A + + T + + P + L GI Sbjct: 62 FVIIDMETTGFSPEQGDEILAMAAAKTVGGVVT-DAYMTLVKPE-KPIPEHISALTGIEA 119 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P + F F I ++ D+ F+ L R + + Sbjct: 120 KDVVFAPPLAEALRTFVPFIAA--GVLIGYHIGHDLAFLRHALWRHYRQKWSGRFVDLQP 177 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + H D C I +H A D ++ ++ ++ Q Sbjct: 178 MMTLIGHSCPTFDDALAC----YGICCPRRHTADGDVEAMAKLWAILLDEFRQRGID 230 >gi|148994700|ref|ZP_01823804.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68] gi|168489751|ref|ZP_02713950.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP195] gi|147927100|gb|EDK78140.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68] gi|183571799|gb|EDT92327.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP195] gi|332075131|gb|EGI85601.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA17570] Length = 1463 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNAAFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185 R+ L L KR+G+ H + + A LL ++ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + +K + + ++ +++ I Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631 >gi|330956986|gb|EGH57246.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326] Length = 237 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 68/200 (34%), Gaps = 6/200 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ET+GL+ D+++ IGAV + D + + F+ L + + + + Sbjct: 42 RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVLIHGLAP 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +P+ + + ++ + +A FD + L+ L Sbjct: 102 STIAAGSEPAQALLDFME----FVGDSPILGFHAPFDQHMLARALKESLDYRLQHPFFDA 157 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++ + +H A D+ + +++ + + + Sbjct: 158 AEIAPMLFEQANLRHAGLDDWTRYFGLHAEERHNASADALVTAELALILFSHARRQQIDS 217 Query: 186 KTNEDRFFKEEKKTVPNISL 205 + + ++ + S Sbjct: 218 PLLLEEKLGQWRRRKQSHSF 237 >gi|253572229|ref|ZP_04849632.1| DNA Pol III epsilon chain [Bacteroides sp. 1_1_6] gi|298386580|ref|ZP_06996136.1| exonuclease [Bacteroides sp. 1_1_14] gi|251838004|gb|EES66092.1| DNA Pol III epsilon chain [Bacteroides sp. 1_1_6] gi|298260957|gb|EFI03825.1| exonuclease [Bacteroides sp. 1_1_14] Length = 259 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 8/191 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + DRI+EI +++ + ++ +T + + P + +HGI D Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKVYPNGNEETKTMR--INPEMH-IPEASSAVHGIYDA 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + + N L+ + + +D Sbjct: 67 DVADCPTFKEVAKNVARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMTKRKFVDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + S ++ S H A D+ +V + + Sbjct: 127 IFHK----MEQRTLSAAYKFYCEKSLEDAHTAEADTRATYEVLKAQLDRYPDLQNDIAFL 182 Query: 189 EDRFFKEEKKT 199 + + Sbjct: 183 AEYSSFTKNVD 193 >gi|261856008|ref|YP_003263291.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus c2] gi|261836477|gb|ACX96244.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus c2] Length = 481 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 6/147 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 DIETTG ++ DRI EIG V L T + + P G L GIT+E + Sbjct: 24 LDIETTGSHTERDRITEIGIVTLHPDG-TQSNWSCLIHP-GCAIPARITTLTGITNEMVA 81 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 D+P F+ + +N IAHNA+FD+GF+ +R ++ ++ ++R Sbjct: 82 DQPVFAHRAQALLERL--ENHIVIAHNARFDLGFLKQAFRREGIR--FNPSVLCSVKLSR 137 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKH 158 + P+ R + Sbjct: 138 QMFPAERRHNLDSVMQRMGLSCAARHR 164 >gi|254430147|ref|ZP_05043850.1| exonuclease [Cyanobium sp. PCC 7001] gi|197624600|gb|EDY37159.1| exonuclease [Cyanobium sp. PCC 7001] Length = 292 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 68/217 (31%), Gaps = 10/217 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCPNGRKNSPEALKLHGITDE 68 + D ETTGLD + D +E+GA+ + + FL P R+N EA+ Sbjct: 67 ILDTETTGLDPEQDHCLEVGAILF--HVPSRAVLSQISFLLP-VRENPAEAINGIAA--- 120 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P ++ +AHNA FD + P S Sbjct: 121 ATTRLPQPWRQGLSCFEAMAADADAVLAHNAAFDRQWFGRGELPALGAPWICSMEDIRWP 180 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVGGSQINFGFK 186 R P+ +L + +HR+ + + +L ++V + F+ Sbjct: 181 AERGLRPNPSVRDLALAYGVPVWAAHRALTDCIYLAQVLQRCEELEALLVVAREPRRLFR 240 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + + K R++ E+ Sbjct: 241 AQLSYAERHKAKQAGFRWNDPVPGAWSRRLSAREVSA 277 >gi|186895675|ref|YP_001872787.1| ribonuclease T [Yersinia pseudotuberculosis PB1/+] gi|186698701|gb|ACC89330.1| ribonuclease T [Yersinia pseudotuberculosis PB1/+] Length = 226 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++++D ++EI AV L + + T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 150 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D+ + ++ +++ Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCELVN 210 Query: 177 GGSQIN 182 ++ Sbjct: 211 RWKKLG 216 >gi|153949552|ref|YP_001400734.1| ribonuclease T [Yersinia pseudotuberculosis IP 31758] gi|166991091|sp|A7FHK6|RNT_YERP3 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|152961047|gb|ABS48508.1| ribonuclease T [Yersinia pseudotuberculosis IP 31758] Length = 215 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++++D ++EI AV L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 80 IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKKLG 205 >gi|51596620|ref|YP_070811.1| ribonuclease T [Yersinia pseudotuberculosis IP 32953] gi|81825791|sp|Q66A36|RNT_YERPS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|51589902|emb|CAH21534.1| ribonuclease T [Yersinia pseudotuberculosis IP 32953] Length = 215 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++++D ++EI AV L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 80 IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKKLG 205 >gi|22125847|ref|NP_669270.1| ribonuclease T [Yersinia pestis KIM 10] gi|45441960|ref|NP_993499.1| ribonuclease T [Yersinia pestis biovar Microtus str. 91001] gi|149365707|ref|ZP_01887742.1| ribonuclease T [Yersinia pestis CA88-4125] gi|218929473|ref|YP_002347348.1| ribonuclease T [Yersinia pestis CO92] gi|229837906|ref|ZP_04458065.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895067|ref|ZP_04510244.1| ribonuclease T (RNase T) [Yersinia pestis Pestoides A] gi|229898469|ref|ZP_04513615.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. India 195] gi|229902309|ref|ZP_04517429.1| ribonuclease T (RNase T) [Yersinia pestis Nepal516] gi|24638167|sp|Q8ZE08|RNT_YERPE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|21958778|gb|AAM85521.1|AE013798_8 RNase T, degrades tRNA [Yersinia pestis KIM 10] gi|45436823|gb|AAS62376.1| ribonuclease T [Yersinia pestis biovar Microtus str. 91001] gi|115348084|emb|CAL21010.1| ribonuclease T [Yersinia pestis CO92] gi|149292120|gb|EDM42194.1| ribonuclease T [Yersinia pestis CA88-4125] gi|229680644|gb|EEO76740.1| ribonuclease T (RNase T) [Yersinia pestis Nepal516] gi|229688513|gb|EEO80583.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. India 195] gi|229694272|gb|EEO84319.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701955|gb|EEO89977.1| ribonuclease T (RNase T) [Yersinia pestis Pestoides A] gi|320015036|gb|ADV98607.1| ribonuclease T [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 215 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++++D ++EI AV L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 80 IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKKLG 205 >gi|108807723|ref|YP_651639.1| ribonuclease T [Yersinia pestis Antiqua] gi|108811999|ref|YP_647766.1| ribonuclease T [Yersinia pestis Nepal516] gi|162420848|ref|YP_001606979.1| ribonuclease T [Yersinia pestis Angola] gi|165926445|ref|ZP_02222277.1| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016] gi|165938652|ref|ZP_02227208.1| ribonuclease T [Yersinia pestis biovar Orientalis str. IP275] gi|166010664|ref|ZP_02231562.1| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001] gi|166211013|ref|ZP_02237048.1| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004] gi|167400761|ref|ZP_02306267.1| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422151|ref|ZP_02313904.1| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424940|ref|ZP_02316693.1| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002] gi|270490511|ref|ZP_06207585.1| ribonuclease T [Yersinia pestis KIM D27] gi|294503612|ref|YP_003567674.1| ribonuclease T [Yersinia pestis Z176003] gi|108775647|gb|ABG18166.1| RNAse T [Yersinia pestis Nepal516] gi|108779636|gb|ABG13694.1| RNAse T [Yersinia pestis Antiqua] gi|162353663|gb|ABX87611.1| ribonuclease T [Yersinia pestis Angola] gi|165913526|gb|EDR32147.1| ribonuclease T [Yersinia pestis biovar Orientalis str. IP275] gi|165921666|gb|EDR38863.1| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016] gi|165990366|gb|EDR42667.1| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001] gi|166208193|gb|EDR52673.1| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004] gi|166958963|gb|EDR55984.1| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049614|gb|EDR61022.1| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056127|gb|EDR65905.1| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262361655|gb|ACY58376.1| ribonuclease T [Yersinia pestis D106004] gi|262365605|gb|ACY62162.1| ribonuclease T [Yersinia pestis D182038] gi|270339015|gb|EFA49792.1| ribonuclease T [Yersinia pestis KIM D27] gi|294354071|gb|ADE64412.1| ribonuclease T [Yersinia pestis Z176003] Length = 226 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++++D ++EI AV L + + T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 150 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D+ + ++ +++ Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCELVN 210 Query: 177 GGSQIN 182 ++ Sbjct: 211 RWKKLG 216 >gi|145598067|ref|YP_001162143.1| ribonuclease T [Yersinia pestis Pestoides F] gi|170024107|ref|YP_001720612.1| ribonuclease T [Yersinia pseudotuberculosis YPIII] gi|145209763|gb|ABP39170.1| RNAse T [Yersinia pestis Pestoides F] gi|169750641|gb|ACA68159.1| ribonuclease T [Yersinia pseudotuberculosis YPIII] Length = 226 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++++D ++EI AV L + + T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 150 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D+ + ++ +++ Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCELVN 210 Query: 177 GGSQIN 182 ++ Sbjct: 211 RWKKLG 216 >gi|168490797|ref|ZP_02714940.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC0288-04] gi|225853872|ref|YP_002735384.1| DNA polymerase III PolC [Streptococcus pneumoniae JJA] gi|183574875|gb|EDT95403.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC0288-04] gi|225723163|gb|ACO19016.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae JJA] Length = 1463 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNAAFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185 R+ L L KR+G+ H + + A LL ++ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + +K + + ++ +++ I Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631 >gi|149277808|ref|ZP_01883948.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39] gi|149231496|gb|EDM36875.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39] Length = 456 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 4/118 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V DIETTG + + I EI + + + + ++ + P G+ L GI+ Sbjct: 1 MLYAVVDIETTGGHASGNGITEIS-ILVHNGHSIVQNYETLINP-GQYIPAHIEALTGIS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 +E ++ PSF+ + +E + ++ ++AHN FD FI +L + Sbjct: 59 NEMVETAPSFNQVAAEVYQLLHD--KIFVAHNVNFDFSFIRHQLGVCGYELSCRKLCT 114 >gi|158316676|ref|YP_001509184.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec] gi|158112081|gb|ABW14278.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec] Length = 389 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 66/177 (37%), Gaps = 7/177 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL DR++ + V + L P P + +HG+T + Sbjct: 77 YAVVDVETTGLSPTRDRVLSVAVVLTAADGTVEHRWSTLLDPG---CDPGPVHIHGLTRQ 133 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P+F+++ E +AHNA FD + E RI R+ Sbjct: 134 RLAGSPTFAAVADEVAGLLAG--RVLVAHNAAFDWRMLAGEAMRIGTTIPVEWRLCTLTL 191 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +R L SL +G+ H A D+ +L+ + +++ + Sbjct: 192 ASRLGLELPSLRLASLAAYWGVVQRRA--HDAQDDAEVLAALLPRILQRAADQYLEL 246 >gi|120406462|ref|YP_956291.1| DNA polymerase III subunit epsilon [Mycobacterium vanbaalenii PYR-1] gi|119959280|gb|ABM16285.1| DNA polymerase III, epsilon subunit [Mycobacterium vanbaalenii PYR-1] Length = 333 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 74/201 (36%), Gaps = 7/201 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RI+ + A+ L D ++ L P P +HG+T E L Sbjct: 22 VVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPG---VDPGPTHVHGLTAEML 78 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +P+F + + + +AHN FD F+ AE + ++ + + + Sbjct: 79 AGQPAFGDVVGDLIEVLRG--RTLVAHNVGFDYSFLTAEAEMVHAELPVDTVMCTVELAR 136 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R L +L +G+T H AL D+ +L+ + ++V + + Sbjct: 137 RLDLGLDNLRLETLAAHWGVTQMKP--HDALDDAMVLAQILKPVLVRAQERRKWLPVHPV 194 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 + + Sbjct: 195 SRRTWPNGRITHDEFRPLKAL 215 >gi|88800698|ref|ZP_01116257.1| ribonuclease T [Reinekea sp. MED297] gi|88776562|gb|EAR07778.1| ribonuclease T [Reinekea sp. MED297] Length = 215 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 66/205 (32%), Gaps = 13/205 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVF-LCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L D F + P G AL G Sbjct: 11 VVIDVETAGFNAKTDALLEIAAVTLKMTDDGWLEQDECLFFNVEPFEGANLEQAALDFTG 70 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HNA FD F+ A +R N Sbjct: 71 IDPHNPLRGAVDEGDALKEIFKMIRKGMKAAGCKRAILVGHNANFDHNFLFAAAERANNK 130 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C+ G+ S + H A D+ ++++ M+ Sbjct: 131 RNPFHPFTTFDTAALSALVYGQTVLKRACQASGVEFSDKEAHNAEYDTRKTAELFCNMIN 190 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVP 201 + + E Sbjct: 191 QWKTLGGWPPAPVESTENAESGDNE 215 >gi|315500766|ref|YP_004089567.1| Exonuclease RNase T and DNA polymerase III [Asticcacaulis excentricus CB 48] gi|315418778|gb|ADU15416.1| Exonuclease RNase T and DNA polymerase III [Asticcacaulis excentricus CB 48] Length = 324 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 65/168 (38%), Gaps = 15/168 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 ++ D ETTGL+ D +IEIGA+ D +V+ L G +L GI Sbjct: 73 VIIDTETTGLNKAEDAVIEIGAIAFRFDDRGVVGDLIEVYGALQDPGFPIPANITELTGI 132 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D +K + SI + + IAHNA FD + +R++ D + Sbjct: 133 DDAMVKGQ----SIDFHVLEALIKPADLIIAHNAAFDRPY----CERLSPAFADKAWACS 184 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I + + L L + G H A+ D L +V ++ Sbjct: 185 NSEIDWKARGFEGSKLGYLITQSGYFH---DGHRAVDDCFALLEVLLQ 229 >gi|332203439|gb|EGJ17506.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA47368] Length = 1463 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNAAFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|262194125|ref|YP_003265334.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077472|gb|ACY13441.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 4/117 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNG-RKNSPEALKLHGITD 67 + D ETTGLD + I+EI A+ + + V + P PEAL+++G Sbjct: 5 VFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERALVLRVRPERLEDADPEALEVNGYRR 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 D S +E A HN FD F+ A + P + Sbjct: 65 RAWADAVSLGDAMAELAPMLEG--AVLAGHNVAFDRRFLEAAWDYVGHRPENLDHHA 119 >gi|170761478|ref|YP_001786710.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A3 str. Loch Maree] gi|169408467|gb|ACA56878.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A3 str. Loch Maree] Length = 855 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 4/176 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+E+TG+++ D I++I +++ + + +FQ FL P + Sbjct: 494 NVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLIPKKSVGDSYLVH-GFSDQ 552 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ + + +F +F + + HN FD+ +N+EL+R++ + DTL Sbjct: 553 FLKENGENKKVVLKDFLEFIKD--TVIVGHNVTFDISILNSELERLSLEKASFKTYYDTL 610 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IARR +PS N + +S H A+ D DV + M+ + Sbjct: 611 DIARRFYPSLTNHKLETLSKL-FNTETKSSHDAMDDILATKDVLMAMLKEKVKPTI 665 >gi|169627433|ref|YP_001701082.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus ATCC 19977] gi|169239400|emb|CAM60428.1| DNA polymerase III, epsilon subunit (DnaQ) [Mycobacterium abscessus] Length = 327 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 77/209 (36%), Gaps = 7/209 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +V D+ET+G R+I + A+ + + L P P +HG+T Sbjct: 13 KWVVVDLETSGFQPGRARVISVAALAMDADGTITDSVVSLLNPG---VDPGPTHVHGLTP 69 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L+ +P FS I + +AHN FD F+ AE + + + + + Sbjct: 70 EMLEGQPEFSDIAPDLIALLRG--RTLVAHNVGFDYSFLAAEAELVGAELPTEAVMCTVE 127 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 R + + L +L +G+ H A D+ +L++V K++ + Sbjct: 128 LTRRLELDTPNLRLETLAAHWGVE--QLKAHDAYDDARVLAEVLPKVLERARERGTWLPI 185 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 E + V + L + Sbjct: 186 RETTRKRWPNGRVTHDELRPLKTLASRQP 214 >gi|331018941|gb|EGH98997.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 204 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 3/168 (1%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R EI V + R FQ + G + L GI+ Sbjct: 4 RVAVIDFETTGISPNPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF + + ++ ++ Sbjct: 62 NNMIRTAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L S + +HR+ A + ++L + + ++ Sbjct: 122 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 169 >gi|237801479|ref|ZP_04589940.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6] gi|330873519|gb|EGH07668.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|331024338|gb|EGI04395.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6] Length = 203 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 3/168 (1%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R EI V + R FQ + G + L GI+ Sbjct: 3 RVAVIDFETTGISPNPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF + + ++ ++ Sbjct: 61 NNMIRTAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 120 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L S + +HR+ A + ++L + + ++ Sbjct: 121 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 168 >gi|237649657|ref|ZP_04523909.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974] gi|237821357|ref|ZP_04597202.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974M2] Length = 1463 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNAAFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|213966786|ref|ZP_03394937.1| exonuclease [Pseudomonas syringae pv. tomato T1] gi|301383295|ref|ZP_07231713.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13] gi|302062466|ref|ZP_07254007.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40] gi|302133448|ref|ZP_07259438.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928636|gb|EEB62180.1| exonuclease [Pseudomonas syringae pv. tomato T1] Length = 204 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 3/168 (1%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R EI V + R FQ + G + L GI+ Sbjct: 4 RVAVIDFETTGISPNPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF + + ++ ++ Sbjct: 62 NNMIRTAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L S + +HR+ A + ++L + + ++ Sbjct: 122 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 169 >gi|213162305|ref|ZP_03348015.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 83 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 HGALLD+ +L++VY+ M G + + F + R E + + + Sbjct: 1 MHGALLDAQILAEVYLAMTGGQTSMTFAMEGETQRQQGEATIQRI---VRQASRLRVVFA 57 Query: 217 TKEELDEHDKTIQTLGKN---AIWD 238 ++EEL H+ + + K +W Sbjct: 58 SEEELAAHESRLDLVQKKGGSCLWR 82 >gi|168494862|ref|ZP_02719005.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|168494874|ref|ZP_02719017.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|168495024|ref|ZP_02719167.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|183575147|gb|EDT95675.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|183575215|gb|EDT95743.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|183575301|gb|EDT95829.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] Length = 307 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 6/215 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ET + + IG V+ D + F + P + + +HGIT E Sbjct: 5 YVALDVET--ANDFRGSVCSIGLVKFKDGNIV-DAFYTLINPE-EEFDDFNIFIHGITPE 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + DF +AH A+FD+G + Q+ D + I Sbjct: 61 DVLDSPTFPEVRKAIVDFIGS--DIVVAHFAQFDMGALKDVYQKYELDFDNIEYICSYRL 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 L L K I + H + S L+ + + F + + Sbjct: 119 AKVALPGQLNYKLKRLAKNLNIELDHHNALSDARASGLILEYLLSTNSFSDLNAFLKEYS 178 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 ++ + + + L + T+EE Sbjct: 179 YNKTGLLGQYGFKRKKSYQYKENLIYQPTEEEKAA 213 >gi|117920981|ref|YP_870173.1| ribonuclease T [Shewanella sp. ANA-3] gi|166200021|sp|A0KY98|RNT_SHESA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|117613313|gb|ABK48767.1| RNAse T [Shewanella sp. ANA-3] Length = 222 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S+ D ++EI +++ D ++T + P G PEAL +G Sbjct: 20 VVIDVETAGFNSQTDALLEIAVTLLKMDDEGLLGIDKTLHFNIEPFEGANLEPEALAFNG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + +AHNA FD GF++ ++R + Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L C GI ++ H AL D+ ++++ ++ Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCHIVN 199 Query: 177 GGSQIN 182 Q+ Sbjct: 200 RWKQLG 205 >gi|333027027|ref|ZP_08455091.1| putative DNA polymerase III [Streptomyces sp. Tu6071] gi|332746879|gb|EGJ77320.1| putative DNA polymerase III [Streptomyces sp. Tu6071] Length = 611 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 9/175 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ET+GL ++ DR++ + V + D +T F + P P + +HG+T E L Sbjct: 23 VDVETSGLMARRDRVLSVAVVTMGPDGEQTGE-FSTLVDPG---CDPGPVDVHGLTRERL 78 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P+F I + +AHNA+FD F+ E R R+ Sbjct: 79 SGAPAFDQIAGRLGAMLQD--RVLVAHNAQFDYDFLAHEFARARLYLPVTRRLCTLALNR 136 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + P+ L+SL YG+ + H AL D+ +L+ ++ + ++++ Sbjct: 137 QVDPPTRDMKLDSLAAHYGVPRTRA--HDALDDTRVLAGIFRATLREAARLDLPL 189 >gi|300767360|ref|ZP_07077272.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495179|gb|EFK30335.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 936 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 71/184 (38%), Gaps = 7/184 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M K V DIETTG K DRII+IG + + TF + P Sbjct: 1 MTMKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFVKNNKII-NTFATDVNP-LTTVPAVI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L GI++ ++ P F + + ++AHN FD+ FIN+ELQR+ L Sbjct: 59 ENLTGISNARVRKAPPFDDLAGTVYSLLQG--TVFVAHNVNFDLPFINSELQRVGYPELP 116 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + +S L L I +H H A D+ + ++I + + Sbjct: 117 IQAVDTVSLSQILLPTASSFRLRDLSHLLAIDHNHP--HSADSDAIATAHLFITLQQRLA 174 Query: 180 QINF 183 + Sbjct: 175 HLPL 178 >gi|146309112|ref|YP_001189577.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp] gi|145577313|gb|ABP86845.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp] Length = 233 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 73/199 (36%), Gaps = 12/199 (6%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-----NRTFQVFLCPNGRKNSPEA 59 ++ R +V D+ETTGL+ + D+++ IGAV + + + RT + P+ + ++ Sbjct: 37 HQQRFVVLDLETTGLNMRRDQVLAIGAVVIDNGAIDLAQQFERTLHL---PDHQASASTL 93 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + ++ +P + + ++ +A +A+FD + L++ L Sbjct: 94 IHGIAPSEVARGVEPVEALLGFME----FVGSSPVLAFHAEFDQRMLARALKQHLGYRLQ 149 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 S S + +H A D+ + +++ + + Sbjct: 150 HSFFDVAEIAPLLCPQSRIRQGGLDEWVAEFGLQVHQRHNASADALVTAELALMLFSKAR 209 Query: 180 QINFGFKTNEDRFFKEEKK 198 + +R ++ Sbjct: 210 RQGIDSLCELERQLSSRRR 228 >gi|116493923|ref|YP_805657.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Lactobacillus casei ATCC 334] gi|116104073|gb|ABJ69215.1| 3'-5' exonuclease and CRISPR-associated protein cas2 [Lactobacillus casei ATCC 334] Length = 301 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50 + DIETTGLD++ D II IGAV+ ++T + F + P Sbjct: 130 FVALDIETTGLDAERDAIIAIGAVKGPSVNETEK-FTTLVNP 170 >gi|90579019|ref|ZP_01234829.1| DNA polymerase III subunit epsilon [Vibrio angustum S14] gi|90439852|gb|EAS65033.1| DNA polymerase III subunit epsilon [Vibrio angustum S14] Length = 249 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL++ D II +G V ++ ++ + P + +++ +HGIT Sbjct: 59 FVALDFETTGLNANKDDIISVGLVPFTINRIFCKQSQHWVVKPKAK-LDEDSVIIHGITH 117 Query: 68 EFLKDKPSFSS 78 ++ P Sbjct: 118 SDVQTAPDIRR 128 >gi|18309405|ref|NP_561339.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13] gi|18144081|dbj|BAB80129.1| probable ATP-dependent DNA helicase [Clostridium perfringens str. 13] Length = 870 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 76/213 (35%), Gaps = 11/213 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IVFD+E+TG+D D II+I A++L + F+ FL K + Sbjct: 503 NIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLK---NKKPVKDSYYVHGFS 559 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + +++ + HN ++D+ + +EL+R N DTL Sbjct: 560 DEMLQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERSNLGKPKFKTFYDTL 619 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-------IKMMVGGSQ 180 I RR +P + N + H+ H A+ D ++ I+ Sbjct: 620 DIYRRFYPGNINYKLENLSKV-YDTKHKPSHDAMDDIIATGELLVRAINEKIRETSMERM 678 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 ++ + I+ KR L Sbjct: 679 TLMSKHLKAFTAISKKLNELFQIAESKRPYELV 711 >gi|303271977|ref|XP_003055350.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545] gi|226463324|gb|EEH60602.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545] Length = 1468 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 17/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--D 67 IVFD+ETTGL DRIIEI A +L D T+ + P + + +L GIT Sbjct: 308 IVFDLETTGLAKLKDRIIEIAAYDLNDK--THAPMSTLVNPGRTYLTGQITRLTGITNAM 365 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNA-------EWIAHN-AKFDVGFINAELQRINKDPLD 119 PSF +F +E AHN +FD GF+ AE RI ++ D Sbjct: 366 VSNPGVPSFVRAAELLEEFVDEARRRGGGASVILAAHNARQFDAGFLKAEYDRIQREFPD 425 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK-----HGALLDSHLLSDVYIKM 174 R +DTL IAR+ P + + + + H A D+ +L ++ M Sbjct: 426 DWRFVDTLPIARKLVPKTEVFGSHKMEALATRYDVKPVDGETAHRAGADARVLGEIVEAM 485 Query: 175 MV 176 + Sbjct: 486 LG 487 >gi|153817923|ref|ZP_01970590.1| Gp39 [Vibrio cholerae NCTC 8457] gi|126511550|gb|EAZ74144.1| Gp39 [Vibrio cholerae NCTC 8457] Length = 184 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 7/125 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+ D ETTGLDS RI+E+ ++ + + + P SPE +HGIT++ Sbjct: 10 IILDTETTGLDSD-ARIVEVSIIDAQTGI---KLYSSLVNP-LCSISPEVTAIHGITNDM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+F ++++ + ++ A +N FD L+ + R Sbjct: 65 VIDMPTFDKVWNDIKGYLSD--AVIYVYNLDFDYRMFAQSLRPFGYPVANLVRFFGGGVC 122 Query: 130 ARRKH 134 R + Sbjct: 123 VMRWY 127 >gi|296110415|ref|YP_003620796.1| ATP-dependent helicase DinG [Leuconostoc kimchii IMSNU 11154] gi|295831946|gb|ADG39827.1| ATP-dependent helicase DinG [Leuconostoc kimchii IMSNU 11154] Length = 801 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 7/174 (4%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTG +K RII+IG + F+ F+ P G+ + +L I+ Sbjct: 7 FVVVDLETTGQSVAKGGRIIQIGMTFIKQRKIV-DHFESFVNP-GQLIARNIQQLTHISQ 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +K+ P F I + + N + K + Sbjct: 65 KEVKNAPYFEEIAPLLQNLLKDAVIIAHNINFDYPYLNDEFVRTGFQKLNSAAIDTVQLA 124 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 I P R + + I+ + H A D+H + +++K+ Q+ Sbjct: 125 QILLPTAPGYRLLDLTTY----LDITLNNAHRANADAHATALLFLKLWQRAEQL 174 >gi|283851810|ref|ZP_06369087.1| DNA polymerase III, epsilon subunit [Desulfovibrio sp. FW1012B] gi|283572726|gb|EFC20709.1| DNA polymerase III, epsilon subunit [Desulfovibrio sp. FW1012B] Length = 249 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 1/44 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN 51 + D E TG D + ++ IGAV L F + P Sbjct: 49 FVAVDTELTGFDPRRHALVSIGAVRLRGLSILPGEAFYTLVRPP 92 >gi|197337117|ref|YP_002157942.1| DNA polymerase III, epsilon chain [Vibrio fischeri MJ11] gi|197314369|gb|ACH63818.1| DNA polymerase III, epsilon chain [Vibrio fischeri MJ11] Length = 259 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 8/178 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-------LCPNGRKNS 56 N M V D ET+GL+ K D I+ IG V +++ + Q + Sbjct: 61 SNDMAFTVVDFETSGLNPKTDHIVSIGWVHIINGVIKLNSAQHHIINEPISINAEDEGEE 120 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + + K S + F N + + H A + F+ + Sbjct: 121 RDHTARSLHHILPEQQKMGISLEKAMECFFSNLPSNILVVHGATIEQRFLEQFFLSLQLP 180 Query: 117 PLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L + + + D R + H AL+D+ +++++ Sbjct: 181 NLPMIWLDTLRIEQNTIQQNRYQRDFRLFSLRRQYKLPDYPAHHALVDAISTAELFLA 238 >gi|149179899|ref|ZP_01858404.1| DNA polymerase III, alpha subunit [Bacillus sp. SG-1] gi|148852091|gb|EDL66236.1| DNA polymerase III, alpha subunit [Bacillus sp. SG-1] Length = 245 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 73/176 (41%), Gaps = 8/176 (4%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +FD+ETTG + D I+ IGA+++ + +TF + P + S E + G+ Sbjct: 65 IFDLETTGFFPEIGDEIVSIGAIKMQGNKILDQKTFYEVINP-LQNVSLETKRFTGLRRT 123 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +F +F +AH A FD+ F+ +++ + +P I Sbjct: 124 DFIKAKTLPVGLKDFLEFCKG--TILVAHPASFDINFLQKRIRKWDLPSFEPEYIDSYAL 181 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + + IS +++H AL D+ + ++V+ ++++ + Sbjct: 182 AKELLNEQKCYLDD---LVKKFQISEKTRHHALNDAIMTAEVFQELLILCKEKKVE 234 >gi|327462769|gb|EGF09091.1| DNA polymerase III PolC [Streptococcus sanguinis SK1057] Length = 1462 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GYPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 +++ + EF +F + + +AHNA FDVGF+N +R + ++ Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 ++ + + + H + + A LL + N Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T+ +K V + ++ +++ Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624 >gi|149927335|ref|ZP_01915591.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] gi|149824049|gb|EDM83272.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] Length = 248 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCP 50 D ETTGL+ + D II IGAV + + ++ L P Sbjct: 57 AIDFETTGLNPEYDDIISIGAVPLMSNRIMLGQSRYWILKP 97 >gi|110799207|ref|YP_694883.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens ATCC 13124] gi|110673854|gb|ABG82841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens ATCC 13124] Length = 870 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 4/166 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IVFD+E+TG+D D II+I A++L + F+ FL K + Sbjct: 503 NIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLK---NKKPVKDSYYVHGFS 559 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + +++ + HN ++D+ + +EL+R N DTL Sbjct: 560 DEMLQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYDTL 619 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I RR +P + N + H+ H A+ D ++ ++ Sbjct: 620 DIYRRFYPGNINYKLENLSKV-YDTKHKPSHDAMDDIIATGELLVR 664 >gi|330504960|ref|YP_004381829.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] gi|328919246|gb|AEB60077.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina NK-01] Length = 200 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 7/168 (4%) Query: 7 MRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M I V D ETTG+ R EIG + +R +Q + +G P +L GI Sbjct: 1 MESIAVIDFETTGVSPTQARATEIGVAIIEGGRIVDR-YQSLMN-SGAWVPPFIEQLTGI 58 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ L+ P + +E DF E +AHNA FD F +AEL R+ + L P Sbjct: 59 SNAMLRKAPPSDQVMNEVADFIGE--RPLLAHNASFDQKFWDAELARVRRRRLQPFACSL 116 Query: 126 TLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 LS S +LN+ +HR+ A + ++L ++ Sbjct: 117 LLSRRLLPEAPSHKLGNLNAWAGLPDTGRAHRALADAEMAANLTLHLF 164 >gi|224023901|ref|ZP_03642267.1| hypothetical protein BACCOPRO_00618 [Bacteroides coprophilus DSM 18228] gi|224017123|gb|EEF75135.1| hypothetical protein BACCOPRO_00618 [Bacteroides coprophilus DSM 18228] Length = 163 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 63/170 (37%), Gaps = 8/170 (4%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+ D ET +++ + +G V + + TF + P S ++HG+ Sbjct: 1 MKDFAAIDFET--ANNQRSSVCSVGIVVVRNDEIV-DTFYSLINPEPNYYSYWCSQVHGL 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E ++ P F ++ + + +AHN FD + A + D D Sbjct: 58 TREDTENAPVFPDVWKQIEPLIDG--LPLVAHNRPFDESCLKAVFRVYQMDYPDYEFYDT 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + L+++ G + H AL D+ + + +++ Sbjct: 116 LCVSRKVFPYLPNHQLHTVAAACG--YHLENHHHALADAEACAWIAREIL 163 >gi|28867700|ref|NP_790319.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000] gi|28850935|gb|AAO54014.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 237 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 67/200 (33%), Gaps = 6/200 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ET+GL+ D+++ IGAV + D + + F+ L + + + + Sbjct: 42 RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKLSPAVLIHGLAP 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +P + + ++ + +A FD + L+ L + Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLARALKESLDYRLQHAFFDA 157 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++ + +H A D+ + +++ + + + Sbjct: 158 AEIAPMLCEQANLRHAGLDDWTQFFGLHAEERHNASADALVTAELALILFSHARRQQIDS 217 Query: 186 KTNEDRFFKEEKKTVPNISL 205 + ++ + S Sbjct: 218 TLRLAESLGQWRRRKQSHSF 237 >gi|332365809|gb|EGJ43566.1| DNA polymerase III PolC [Streptococcus sanguinis SK355] Length = 1462 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSVFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 +++ + EF +F + + +AHNA FDVGF+N +R + ++ Sbjct: 482 HVRNAKPLEQVLKEFQEFCKD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 ++ + + + H + + A LL + N Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T+ +K V + ++ +++ Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624 >gi|255292918|dbj|BAH90017.1| DNA polymerase III epsilon subunit [uncultured bacterium] gi|255293172|dbj|BAH90263.1| DNA polymerase III epsilon subunit [uncultured bacterium] Length = 297 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 69/236 (29%), Gaps = 27/236 (11%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL---DYSK--TNRTFQVFLCPNGRKNSPEALKLHGI 65 V D+ETTGLD + D IIE+ D + +FQ P+ Sbjct: 45 VVDVETTGLDPQRDEIIELAMTPFNYGLDGTIFSVGDSFQRLRQPSKPIAPEITAITGIT 104 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + F + IAHNA FD F+ +R N Sbjct: 105 NEMVAGQ-----IVDPAAVASFAAPASLVIAHNAAFDRRFL----ERFNDVFSTKPWACS 155 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---------KMMV 176 I L L + G L + L +++ +++ Sbjct: 156 LSQIDWAAEGFEGTKLAYLAQAAGFFYDRHRAMHDCLATVELLAMWLPRSGATGLSRLLD 215 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVP----NISLLKRDKPLFTRITKEELDEHDKTI 228 G +++ F ++ N + + + + + + + + + Sbjct: 216 GARAVSWRIWAENAPFDLKDVLKARGYRWNGDPGPQPRAWYIDVPEAQCEAELRFL 271 >gi|169342971|ref|ZP_02863999.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens C str. JGS1495] gi|169298880|gb|EDS80954.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens C str. JGS1495] Length = 876 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 4/166 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IVFD+E+TG+D D II+I A++L + F+ FL K + Sbjct: 509 NIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLK---NKKPVKDSYYVHGFS 565 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + +++ + HN ++D+ + +EL+R N DTL Sbjct: 566 DEMLQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYDTL 625 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I RR +P + N + H+ H A+ D ++ ++ Sbjct: 626 DIYRRFYPGNINYKLENLSKV-YDTKHKPSHDAMDDIIATGELLVR 670 >gi|315303836|ref|ZP_07874324.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria ivanovii FSL F6-596] gi|313627797|gb|EFR96442.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria ivanovii FSL F6-596] Length = 928 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 5/163 (3%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + R IV D+ETTG + ++DRII+ A + + T+ FL P + +L Sbjct: 2 KQKRYIVVDLETTGNQASRDDRIIQFAACFVESGKRL-ETYATFLNPE-KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+ + ++D P F + + + ++AHN FD F+ E+ R ++ Sbjct: 60 GISPKDVRDAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREMNRAGISLGKMKKL 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 L L +G+ + + + Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFGLGHDKPHRADSDAEVTA 160 >gi|21592760|gb|AAM64709.1| unknown [Arabidopsis thaliana] Length = 316 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 61/181 (33%), Gaps = 13/181 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D+ETTGL KN+RIIEI A ++ + TFQ + P + + Sbjct: 112 IVSDLETTGLHRKNERIIEIAAQDIAGGGYS--TFQTLVNPGVVPITNAHIHGIRNDMVC 169 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + P + F + + +AHN K + + ++ Sbjct: 170 RPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNWLL 229 Query: 125 DTLSIARRKHPSSRNDLNSLCK------RYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 R++ S L Y H AL D LLS V+ K+ + Sbjct: 230 LDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLTIDL 289 Query: 179 S 179 Sbjct: 290 K 290 >gi|15240411|ref|NP_198046.1| exonuclease family protein [Arabidopsis thaliana] gi|30690464|ref|NP_851082.1| exonuclease family protein [Arabidopsis thaliana] gi|30690468|ref|NP_851083.1| exonuclease family protein [Arabidopsis thaliana] gi|42573491|ref|NP_974842.1| exonuclease family protein [Arabidopsis thaliana] gi|51968684|dbj|BAD43034.1| unknown protein [Arabidopsis thaliana] gi|108385373|gb|ABF85778.1| At5g26940 [Arabidopsis thaliana] gi|332006246|gb|AED93629.1| exonuclease family protein [Arabidopsis thaliana] gi|332006247|gb|AED93630.1| exonuclease family protein [Arabidopsis thaliana] gi|332006248|gb|AED93631.1| exonuclease family protein [Arabidopsis thaliana] gi|332006249|gb|AED93632.1| exonuclease family protein [Arabidopsis thaliana] Length = 316 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 61/181 (33%), Gaps = 13/181 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D+ETTGL KN+RIIEI A ++ + TFQ + P + + Sbjct: 112 IVSDLETTGLHRKNERIIEIAAQDIAGGGYS--TFQTLVNPGVVPITNAHIHGIRNDMVC 169 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + P + F + + +AHN K + + ++ Sbjct: 170 RPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNWLL 229 Query: 125 DTLSIARRKHPSSRNDLNSLCK------RYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 R++ S L Y H AL D LLS V+ K+ + Sbjct: 230 LDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLTIDL 289 Query: 179 S 179 Sbjct: 290 K 290 >gi|238927543|ref|ZP_04659303.1| possible exonuclease [Selenomonas flueggei ATCC 43531] gi|238884825|gb|EEQ48463.1| possible exonuclease [Selenomonas flueggei ATCC 43531] Length = 219 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 71/222 (31%), Gaps = 23/222 (10%) Query: 7 MRKIVFDIETTGLDSKN-----------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M+ IV D+E ++ IIEIGAV L + FQ ++CP Sbjct: 1 MKHIVVDLE---MNPVGKEYRDVRRKLNGEIIEIGAVRLNEDFVQEDEFQCYVCPEYGMV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA---KFDVGFINAELQR 112 +L GIT E + P+F+ F F + E + + + K +L Sbjct: 58 KKHITELTGITQEKVAGHPAFADSFHAFVAWIGEAETKIYSWSMSDIKQLRKECRLKLPD 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + LD + R + L G H AL D+ S V Sbjct: 118 FDVTWLDTRWVDLQQEFDDRLGLHNSLALKHALGAMGRRFEGSQ-HSALADAVNTSAVLA 176 Query: 173 KMMVGGS-----QINFGFKTNEDRFFKEEKKTVPNISLLKRD 209 M + D + P++ LKR+ Sbjct: 177 LMQDDAKFRETMRPVLEILEPSDGLSNSIGELFPDLEKLKRN 218 >gi|187932764|ref|YP_001885887.1| exonuclease [Clostridium botulinum B str. Eklund 17B] gi|187720917|gb|ACD22138.1| putative exonuclease [Clostridium botulinum B str. Eklund 17B] Length = 974 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 10/168 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 I DIETTGLD N IIEIGAV++ + + T T++V + P G+ + Sbjct: 10 NVIYLDIETTGLDENNCEIIEIGAVKIKNSNVT--TYEVLIRPKRNVPISIYKLCQGLKE 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L + I +E ++ I HN F+ F++ + I + D++ Sbjct: 68 EELMNSKYLEDIKNEL--LVFLEDLPLICHNGGFERKFLSCHIPEIKNEIF------DSM 119 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ P + + + H L DS V ++ Sbjct: 120 ELSAILEPWRKEYNLDSLIKSITILDKDEFHRGLEDSIDTLKVVNSLL 167 >gi|330874768|gb|EGH08917.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 237 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 66/200 (33%), Gaps = 6/200 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ET+GL+ D+++ IGAV + D + + F+ L + + + + Sbjct: 42 RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVLIHGLAP 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +P + + + + +A FD + L+ L + Sbjct: 102 SAIAAGSEPVEALLDFME----FVGESPILGFHAPFDQHMLARALKESLDYRLQHAFFDA 157 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++ + +H A D+ + +++ + + + Sbjct: 158 AEIAPMLCEQANLRHAGLDDWTQFFGLHAEERHNASADALVTAELALILFSHARRQQIDS 217 Query: 186 KTNEDRFFKEEKKTVPNISL 205 + ++ + S Sbjct: 218 PVRLAESLGQWRRRKQSHSF 237 >gi|303231325|ref|ZP_07318060.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6] gi|302514005|gb|EFL56012.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6] Length = 861 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 4/163 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V+D+E+TG D+ DRI++I A+ + F+ F+ P S +L + Sbjct: 495 VVYDVESTGTDTTEDRIVQIAAMRIDKDGNEIERFERFINPG---KSVGTSQLVHGFTDA 551 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S N + HN +D+ ++ EL R N + DTL I Sbjct: 552 YLAEHGESPKVVLEAFKEFSNNRIIVGHNVNYDISILSHELARHNLGEPQFKAVYDTLDI 611 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 RR +P+ N +Y I+H H A+ D + I Sbjct: 612 FRRFYPTLENHKLGFLSKY-FPINHTPTHNAMDDIIATGQLLI 653 >gi|269302439|gb|ACZ32539.1| exonuclease, DNA polymerase III, epsilon subunit family [Chlamydophila pneumoniae LPCoLN] Length = 249 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 5/170 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D E TGLD K DRIIEI AV S + + + + P R S E+ ++H I++ L+ Sbjct: 12 LDCEMTGLDVKKDRIIEIAAVRFTFDSVIS-SIEFLINPE-RVVSAESQRVHHISNAMLR 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 D+P + +F + FF E + + H+ FD+ ++ E++RI + L IIDTL +A+ Sbjct: 70 DQPKIAEVFPQIKAFFKEGDYI-VGHSVGFDLQVLSQEMERIGETFLSKYTIIDTLRLAK 128 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 S N L SL + + H A+ D + +++ + + Sbjct: 129 EYGDSPNNSLESLAVHFNVPY--DGNHRAMKDVEININIFKHLCKRFRTL 176 >gi|332534627|ref|ZP_08410459.1| ribonuclease T [Pseudoalteromonas haloplanktis ANT/505] gi|332035907|gb|EGI72388.1| ribonuclease T [Pseudoalteromonas haloplanktis ANT/505] Length = 234 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 73/186 (39%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++EI A +++ D + T + P G A+ +G Sbjct: 19 VVIDVETAGFNKETDALLEIAASVLKMDDEGLLSIDHTVHFHVQPFEGANIEQAAIDFNG 78 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q + +AHNA FD GF+NA ++R N Sbjct: 79 IDPFSPLRGAVPEDEVIKEICKVVRKAQKAAGCQRSVIVAHNAAFDHGFLNAAIERNNIK 138 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + + L C+ GI + H AL D+ +++Y ++ Sbjct: 139 RTPFHPFVSFDTTSLAGLALGQTVLAKACRAAGIEFDNSQAHSALYDTERTAELYCLIVN 198 Query: 177 GGSQIN 182 Q+ Sbjct: 199 RWQQLG 204 >gi|262193953|ref|YP_003265162.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077300|gb|ACY13269.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 4/117 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNG-RKNSPEALKLHGITD 67 + D ETTGLD + I+EI A+ + + V + P PEAL+++G Sbjct: 5 VFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERALVLRVRPERLEDADPEALEVNGYRR 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 D S SE A HN FD F+ A + P + Sbjct: 65 RAWADAVSLGDAMSELAPMLEG--AVLAGHNVAFDRSFLEAAWDYVGHRPENLDHHA 119 >gi|182624633|ref|ZP_02952415.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens D str. JGS1721] gi|177910237|gb|EDT72625.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens D str. JGS1721] Length = 876 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 4/166 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IVFD+E+TG+D D II+I A++L + F+ FL K + Sbjct: 509 NIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLK---NKKPVKDSYYVHGFS 565 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + +++ + HN ++D+ + +EL+R N DTL Sbjct: 566 DEMLQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYDTL 625 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I RR +P + N + H+ H A+ D ++ ++ Sbjct: 626 DIYRRFYPGNINYKLENLSKV-YDTKHKPSHDAMDDIIATGELLVR 670 >gi|162447750|ref|YP_001620882.1| DNA polymerase III subunit epsilon [Acholeplasma laidlawii PG-8A] gi|161985857|gb|ABX81506.1| DNA polymerase III, epsilon subunit [Acholeplasma laidlawii PG-8A] Length = 227 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 6/179 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV---ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + +VFD ETTGL K D++IE+GAV ++ D + + + L G Sbjct: 7 KILVFDFETTGLTPKRDKVIEVGAVLLEKIGDTYEIVQEIDYLIKQQTPITD-FISNLTG 65 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+E L D +++ +A+N FD+GF++A Q I Sbjct: 66 ITNEMLARDGVEEEYAFRQLDNLIDEDTLLVAYNLAFDIGFLSALYQTYVAHNYKIQNDI 125 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + L + R+ ++ + H A D+ V + + + Sbjct: 126 LDCMAVYKDRYPYPHKLENAVARFELS--NNQAHRASEDAKATFKVLDCLASEENNLKL 182 >gi|73662598|ref|YP_301379.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642618|sp|Q49XR1|DING_STAS1 RecName: Full=Probable ATP-dependent helicase dinG homolog gi|72495113|dbj|BAE18434.1| putative ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 900 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I ++ Sbjct: 6 YAVVDLETTGNQLDYDEIIQIGITFVRENKIIG-TYHSMIK-TDLEIPPFIQALTSIEED 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F I + + + ++AHN FD+ FI ++ + + + Sbjct: 64 MLNQAPYFHEIAEDIYKQIDG--CIFVAHNVAFDLNFIKKSFKQCHINYRPKKVMDTLEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L+ L + +G I + H A D+ + + I + Sbjct: 122 FKVAFPTDKSYQLSELAEAHG--IILNNAHRADEDAATTAQLMIIAFEKFESLPLD 175 >gi|15618565|ref|NP_224851.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae CWL029] gi|15836187|ref|NP_300711.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138] gi|16752385|ref|NP_444644.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39] gi|33242012|ref|NP_876953.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae TW-183] gi|4376954|gb|AAD18794.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029] gi|8163364|gb|AAF73628.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila pneumoniae AR39] gi|8979027|dbj|BAA98862.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138] gi|33236522|gb|AAP98610.1| DNA polymerase III [Chlamydophila pneumoniae TW-183] Length = 249 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 5/170 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D E TGLD K DRIIEI AV S + + + + P R S E+ ++H I++ L+ Sbjct: 12 LDCEMTGLDVKKDRIIEIAAVRFTFDSVIS-SIEFLINPE-RVVSAESQRVHHISNAMLR 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 D+P + +F + FF E + + H+ FD+ + E++RI + L IIDTL +A+ Sbjct: 70 DQPKIAEVFPQIKAFFKEGDYI-VGHSVGFDLQVLAQEMERIGETFLSKYTIIDTLRLAK 128 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 S N L SL + + H A+ D + +++ + + Sbjct: 129 EYGDSPNNSLESLAVHFNVPY--DGNHRAMKDVEININIFKHLCKRFRTL 176 >gi|47096482|ref|ZP_00234074.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a F6854] gi|254899404|ref|ZP_05259328.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes J0161] gi|254912457|ref|ZP_05262469.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818] gi|254936784|ref|ZP_05268481.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900] gi|284802344|ref|YP_003414209.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 08-5578] gi|284995486|ref|YP_003417254.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 08-5923] gi|47015135|gb|EAL06076.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a F6854] gi|258609379|gb|EEW21987.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900] gi|284057906|gb|ADB68847.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 08-5578] gi|284060953|gb|ADB71892.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 08-5923] gi|293590439|gb|EFF98773.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818] Length = 928 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + R IV D+ETTG + + DRII+ A + + T+ FL P + +L Sbjct: 2 KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 GI+ + +K+ P F + + + ++AHN FD F+ E+ Sbjct: 60 GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104 >gi|157413038|ref|YP_001483904.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9215] gi|157387613|gb|ABV50318.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9215] Length = 248 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 70/230 (30%), Gaps = 12/230 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + ++ D ETTGLD D +IEIG + + +F + N + Sbjct: 26 KILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNNEAEQVNGISADVT 85 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + +D +F ++ DF +AHN +FD + S Sbjct: 86 NISQPWEDGLNFFLKLVDYSDFI-------VAHNVEFDKKWFGKGRLPKLNKKWICSLED 138 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVGGSQIN 182 S + +L + HR+ S + ++++ ++ Sbjct: 139 INWSFQKSLKNRPSVTDLALSFSIPVWNLHRALSDCFYISEVFKKCDNLEELLLKATEPR 198 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 F +K + K ++T E D ++ L Sbjct: 199 FLYKALVSYEERSLAKNAGFRWNSHVQGAWSKKLTPNEAKNLDFRVEILN 248 >gi|206890301|ref|YP_002247886.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742239|gb|ACI21296.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 230 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 8/181 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D E TGL+ D II IGA+++ K F + P+ +K E++ +H IT Sbjct: 24 FVVVDTELTGLNEFRDNIIAIGAIKMKGRTIKIGDIFYRTVSPSTKKFRKESIMIHEITP 83 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L+ P I EF +N + H D+ F+ E++ ++ +P I L Sbjct: 84 SELEKCPQIEPILREFIK--FSKNCLVVGHCVDIDLTFLKKEIRNNLREIFEPFSIDTLL 141 Query: 128 SIARRKHPSSRNDLNSLCKRYGI-----TISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 S I + H AL D+ + + ++ +++ ++ Sbjct: 142 IYKWLIKKEILPSDFSNKNSLEDIALSLDIEPKELHDALSDAFITAQIFQRLLAYLGELK 201 Query: 183 F 183 Sbjct: 202 I 202 >gi|320096178|ref|ZP_08027770.1| DNA polymerase III PolC [Actinomyces sp. oral taxon 178 str. F0338] gi|319976891|gb|EFW08642.1| DNA polymerase III PolC [Actinomyces sp. oral taxon 178 str. F0338] Length = 210 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 56/177 (31%), Gaps = 3/177 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGL + I EIGA+ + + F+ + P+ TD Sbjct: 19 WLVVDVETTGLG-RACEITEIGALRMRGTQVVDE-FEELVRPSAPIPPFIEKMTGITTDM 76 Query: 69 FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 P W +AHNA FD+GF+ + + P + Sbjct: 77 VAGADPVQAVYPRFAAWAGAGAPGRVLVAHNADFDMGFLARAARACSMPWRTPPSVDTLS 136 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + + H AL D+ +V + ++ FG Sbjct: 137 LARLALPRPVVANHRLGTVARHFRTATAPGHRALGDARATGEVLCGLAGLAAEAGFG 193 >gi|298498457|ref|ZP_07008264.1| gp39 [Vibrio cholerae MAK 757] gi|297542790|gb|EFH78840.1| gp39 [Vibrio cholerae MAK 757] Length = 188 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+ D ETTGLDS RI+E+ ++ + + + P SPE +HGIT++ Sbjct: 13 IILDTETTGLDSD-ARILEVSIIDAQTGI---KLYSSLVNP-LCSISPEVTAIHGITNDM 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+F ++++ + ++ + +N FD L+ + Sbjct: 68 VIDMPTFDKVWNDIKGYLSD--SVIYVYNLDFDYRMFAQSLRPFGYPVANLVHFFGGGVC 125 Query: 130 ARRKH 134 R + Sbjct: 126 VMRWY 130 >gi|168485959|ref|ZP_02710467.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1087-00] gi|183570911|gb|EDT91439.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1087-00] Length = 1463 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSVFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|254827216|ref|ZP_05231903.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165] gi|258599599|gb|EEW12924.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165] Length = 928 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + R IV D+ETTG + + DRII+ A + + T+ FL P + +L Sbjct: 2 KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 GI+ + +K+ P F + + + ++AHN FD F+ E+ Sbjct: 60 GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104 >gi|51969194|dbj|BAD43289.1| unknown protein [Arabidopsis thaliana] Length = 316 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 61/181 (33%), Gaps = 13/181 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D+ETTGL +N+RIIEI A ++ + TFQ + P + + Sbjct: 112 IVSDLETTGLHRENERIIEIAAQDIAGGGYS--TFQTLVNPGVVPITNAHIHGIRNDMVC 169 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + P + F + + +AHN K + + ++ Sbjct: 170 RPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNWLL 229 Query: 125 DTLSIARRKHPSSRNDLNSLCK------RYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 R++ S L Y H AL D LLS V+ K+ + Sbjct: 230 LDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLTIDL 289 Query: 179 S 179 Sbjct: 290 K 290 >gi|332359968|gb|EGJ37782.1| DNA polymerase III PolC [Streptococcus sanguinis SK1056] Length = 866 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 +++ + EF +F + + +AHNA FDVGF+N +R + ++ Sbjct: 482 HVRNAKPLEQVLKEFQEFCQD--SVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEF 539 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 ++ + + + H + + A LL + N Sbjct: 540 ARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDL 599 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T+ +K V + ++ +++ Sbjct: 600 NTDLVDENSYKKARVKHATIYVKNQ 624 >gi|325978714|ref|YP_004288430.1| ATP-dependent DNA helicase DinG [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178642|emb|CBZ48686.1| ATP-dependent DNA helicase DinG [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 827 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 8/181 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ N + + D+E TG + II++G V + + +T+Q + P+ S + Sbjct: 1 MMQVNSQKYAIVDLEATGAHAM-AEIIQVGIVIIENDEIV-KTYQTDVNPHEA-LSEHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITDE L P FS + E + + ++AHN KFD + Q + Sbjct: 58 NLTGITDEQLAKAPDFSQVAQEVFSLIED--CVFVAHNVKFDANLLA--EQLFMEGYELR 113 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +DT+ +A+ +P+ + + H A+ D++ + +++K+ Sbjct: 114 TPRVDTVELAQVFYPTFEKYSL-GNLADALALDLADAHTAISDAYATTQLFLKLKAKMKS 172 Query: 181 I 181 + Sbjct: 173 L 173 >gi|262194078|ref|YP_003265287.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077425|gb|ACY13394.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 4/117 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNG-RKNSPEALKLHGITD 67 + D ETTGLD + I+EI A+ + + V + P PEAL+++G Sbjct: 5 VFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVNGYRR 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 D S +E A HN FD F+ A + P + Sbjct: 65 RAWADAVSLGDAMAELAPMLEG--AVLAGHNVAFDRRFLEAAWDCVGHRPENLDHHA 119 >gi|223043083|ref|ZP_03613130.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus capitis SK14] gi|222443294|gb|EEE49392.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus capitis SK14] Length = 900 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 6/178 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG D II+IG + ++ T+ + + P L I ++ Sbjct: 6 YAIVDLETTGNQLDYDEIIQIGITFVRNHKII-DTYHSMIR-TDLEIPPFIQALTSIEED 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ + + +D + ++AHN FD+ FI + + Sbjct: 64 MLAQAPYFNEVAEDIYDQIKD--CIFVAHNISFDLNFIKNAFNNCDIQFKPKKVMDTLEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L+ L + + I H A D+ + + IK + + Sbjct: 122 FKIAFPTDKSYQLSELAQAH--DIPLDKAHRADEDATTTAKLMIKAFKKFESLPLDTQ 177 >gi|224500250|ref|ZP_03668599.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes Finland 1988] gi|254831500|ref|ZP_05236155.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 10403S] Length = 928 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + R IV D+ETTG + + DRII+ A + + T+ FL P + +L Sbjct: 2 KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 GI+ + +K+ P F + + + ++AHN FD F+ E+ Sbjct: 60 GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104 >gi|226942744|ref|YP_002797817.1| DNA polymerase III subunit epsilon [Azotobacter vinelandii DJ] gi|226717671|gb|ACO76842.1| DNA polymerase III, epsilon subunit [Azotobacter vinelandii DJ] Length = 240 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLC 49 R +V D+ETTGL+ + D ++ IGAV + + + +R F+ L Sbjct: 43 RFVVLDLETTGLNVERDVVLSIGAVLIENDAIDLSRQFECTLR 85 >gi|154496866|ref|ZP_02035562.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC 29799] gi|150273824|gb|EDN00937.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC 29799] Length = 191 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 8/173 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I FD+ET + NDR+ IG + + + P R + L GIT Sbjct: 4 RYIAFDVET--PNYANDRMSAIGITVVEAGEIAGE-YYTLVNPEQR-FDRFNIALTGITP 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + DKP+F ++ E + IAHNA FD+ + L+ R T Sbjct: 60 EMVADKPTFPELWREIGPLMDS--GLLIAHNAPFDMSVLAKCLRDYGICWHPTVRYACTC 117 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++RR P N + Y H A DS ++ + + GG+ Sbjct: 118 QMSRRLLPQLPNHKLNTLSDY--LGLELDHHHAGSDSMACGEILLYHLRGGAS 168 >gi|86143556|ref|ZP_01061941.1| nuclease subunit Cho of the excinuclease complex (UvrC-like protein) [Leeuwenhoekiella blandensis MED217] gi|85830003|gb|EAQ48464.1| nuclease subunit Cho of the excinuclease complex (UvrC-like protein) [Leeuwenhoekiella blandensis MED217] Length = 519 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 80/232 (34%), Gaps = 23/232 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + + D+ETTG K ++I EI + L + + NR F + P GR+ KL GI D Sbjct: 49 KFAIIDVETTGGGIKGNKITEICIIVLQEGKEINR-FASLVNP-GREIPLYIEKLTGIND 106 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++D P F + + Q+ ++AHN FD + AE + D L Sbjct: 107 RMVEDAPYFDELAPQIDA--LTQDCIFVAHNVGFDYNVVRAEFKEAGLDFNRKRLCTVRL 164 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + L +LC I +H A D+ ++ + + + Sbjct: 165 AKKLIPG-LFSYSLGNLCTSINIPHY--DRHRATGDTEATVILFQRCLDLDPEY------ 215 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 E + N + P + + E H + + Sbjct: 216 -------EVIQGFLNRKSKESYFPPHFKASDFEELPHKAGVYFFKDKNGKPL 260 >gi|330965486|gb|EGH65746.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091] Length = 237 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 66/200 (33%), Gaps = 6/200 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ET+GL+ D+++ IGAV + D + + F+ L + + + + Sbjct: 42 RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVLIHGLAP 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +P + + + + +A FD + L+ L + Sbjct: 102 SAIAAGSEPVEALLDFME----FVGESPILGFHAPFDQHMLGRALKESLDYRLQHAFFDA 157 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++ + +H A D+ + +++ + + + Sbjct: 158 AEIAPMLCEQANLRHAGLDDWTQFFGLHAEERHNASADALVTAELALILFSHARRQQIDS 217 Query: 186 KTNEDRFFKEEKKTVPNISL 205 + ++ + S Sbjct: 218 PVRLAESLGKWRRRKQSHSF 237 >gi|226224503|ref|YP_002758610.1| ATP-dependent helicase [Listeria monocytogenes Clip81459] gi|254825606|ref|ZP_05230607.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194] gi|225876965|emb|CAS05674.1| Putative ATP-dependent helicase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293594849|gb|EFG02610.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194] gi|328466248|gb|EGF37405.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 1816] Length = 928 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + R IV D+ETTG + + DRII+ A + + T+ FL P + +L Sbjct: 2 KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 GI+ + +K+ P F + + + ++AHN FD F+ E+ Sbjct: 60 GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104 >gi|123968212|ref|YP_001009070.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. AS9601] gi|123198322|gb|ABM69963.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. AS9601] Length = 259 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 71/230 (30%), Gaps = 12/230 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + ++ D ETTGLD D +IEIG + + +F + N ++ Sbjct: 37 KILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNNEAEHVNGISAEVT 96 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + +D +F + DF +AHN +FD + S Sbjct: 97 NISQPWEDGLNFFLKLVDSSDFI-------VAHNVEFDKKWFGKGRLPKLNKKWICSLED 149 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVGGSQIN 182 S + +L + HR+ S + ++++ ++ Sbjct: 150 INWSFQKSLKTRPSVTDLALSFSIPVWNLHRALSDCFYLSEVFKKCDNLEELLLKATEPR 209 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 F +K + K ++T +E D ++ L Sbjct: 210 FLYKALVSYEDRSLPKNAGFKWNSPVQGAWSRKLTTDEAKNLDFRVEILN 259 >gi|16803938|ref|NP_465423.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes EGD-e] gi|224501301|ref|ZP_03669608.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes FSL R2-561] gi|16411352|emb|CAC99977.1| dinG [Listeria monocytogenes EGD-e] Length = 928 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + R IV D+ETTG + + DRII+ A + + T+ FL P + +L Sbjct: 2 KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 GI+ + +K+ P F + + + ++AHN FD F+ E+ Sbjct: 60 GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104 >gi|213967758|ref|ZP_03395905.1| exonuclease [Pseudomonas syringae pv. tomato T1] gi|301382395|ref|ZP_07230813.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13] gi|302061212|ref|ZP_07252753.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40] gi|302132416|ref|ZP_07258406.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927534|gb|EEB61082.1| exonuclease [Pseudomonas syringae pv. tomato T1] Length = 237 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 62/179 (34%), Gaps = 6/179 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ET+GL+ D+++ IGAV + D + + F+ L + + + + Sbjct: 42 RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKLSPAVLIHGLAP 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +P + + ++ + +A FD + L+ L + Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLARALKESLDYRLQHAFFDA 157 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 ++ + +H A D+ + +++ + + + Sbjct: 158 AEIAPMLCEQANLRHAGLDDWTQFFGLHAEERHNASADALVTAELTLILFSHARRQQID 216 >gi|212634649|ref|YP_002311174.1| ribonuclease T [Shewanella piezotolerans WP3] gi|212556133|gb|ACJ28587.1| Ribonuclease T [Shewanella piezotolerans WP3] Length = 235 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 77/210 (36%), Gaps = 13/210 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIG--AVELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +SK D ++EI +++ D ++T + P G PEAL +G Sbjct: 24 VVIDVETAGFNSKTDALLEIAVTMLKMDDDGVLQLDKTLHYHIEPFEGANLEPEALAFNG 83 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + +AHNA FD GF++ ++R Sbjct: 84 IDPTNPLRGAVSEKEAFLEIFKEVKKAQKASECHRSIIVAHNAAFDHGFVSEAIERNGLK 143 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI +R H AL D+ ++++ ++ Sbjct: 144 RTPFHPFATFDTAALAGLAIGQTVLAKACAMAGIPFDNREAHSALYDTERTAELFCLIVN 203 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLL 206 + ++ + E ++ + Sbjct: 204 RWKSLGGWPYIADESDPEAEDVAEADVKPI 233 >gi|47094224|ref|ZP_00231936.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858] gi|47017396|gb|EAL08217.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858] Length = 618 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + R IV D+ETTG + + DRII+ A + + T+ FL P + +L Sbjct: 2 KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 GI+ + +K+ P F + + + ++AHN FD F+ E+ Sbjct: 60 GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104 >gi|294675436|ref|YP_003576052.1| exonuclease [Prevotella ruminicola 23] gi|294473646|gb|ADE83035.1| exonuclease [Prevotella ruminicola 23] Length = 163 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 66/170 (38%), Gaps = 8/170 (4%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR D ET +++ + +G V + + TF + P + ++HG+ Sbjct: 1 MRDFAAIDFET--ANNERTSVCSVGVVIVRNGEIV-DTFYSLIQPEPNYYNYWCSQVHGL 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + E +D P F ++ + + +AHN FD + A + D D Sbjct: 58 SREDTEDAPVFPEVWKQIEPLIDG--LPLVAHNKSFDESCLKAVFRCYQMDYPDYPFYCT 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ + + L+++ + G + H AL D+ + + +++ Sbjct: 116 CVASRKAFPQLPNHQLHTVSEYCG--YHLENHHHALADAEACAWIAREIL 163 >gi|319788791|ref|YP_004090106.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7] gi|315450658|gb|ADU24220.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7] Length = 177 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 9/173 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R IVFD+ET + N+R+ IG + + + T F ++ P +L GI Sbjct: 3 RYIVFDVET--PNRYNNRMSAIGIAVIENGAVTEEYF-SYVDPQT-YFDRFNTQLTGINK 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P+F ++ + AHNA FD+G + L+ + + + T+ Sbjct: 59 YTVSGAPTFPELWERIEPIMSS--GVLAAHNAVFDLGVLKKCLKAYGIEWKNTVKYCCTV 116 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + RR P + LN LC+ YG H A DS +D+ ++ G+Q Sbjct: 117 QMGRRVLPGISHKLNVLCEHYG---IALDHHKADSDSRACADILLRYFESGAQ 166 >gi|254852803|ref|ZP_05242151.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503] gi|300763791|ref|ZP_07073788.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017] gi|258606130|gb|EEW18738.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503] gi|300515527|gb|EFK42577.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017] Length = 928 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + R IV D+ETTG + + DRII+ A + + T+ FL P + +L Sbjct: 2 KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 GI+ + +K+ P F + + + ++AHN FD F+ E+ Sbjct: 60 GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104 >gi|46908132|ref|YP_014521.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes serotype 4b str. F2365] gi|46881402|gb|AAT04698.1| ATP-dependent helicase DinG [Listeria monocytogenes serotype 4b str. F2365] Length = 928 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + R IV D+ETTG + + DRII+ A + + T+ FL P + +L Sbjct: 2 KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 GI+ + +K+ P F + + + ++AHN FD F+ E+ Sbjct: 60 GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104 >gi|330967688|gb|EGH67948.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091] Length = 203 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 3/168 (1%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R EI V + R FQ + G + L GI+ Sbjct: 3 RVAVIDFETTGISPSPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF + + ++ ++ Sbjct: 61 NNMIRTAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 120 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L S + +HR+ A + ++L + + ++ Sbjct: 121 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 168 >gi|157364228|ref|YP_001470995.1| DNA polymerase III, epsilon subunit [Thermotoga lettingae TMO] gi|157314832|gb|ABV33931.1| DNA polymerase III, epsilon subunit [Thermotoga lettingae TMO] Length = 188 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 10/167 (5%) Query: 13 DIETTGLDS-KNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDEFL 70 D ETTG+D DRI+E+ V + R+ + + P R K+H IT+E + Sbjct: 12 DTETTGIDPMNGDRIVEVAIVPVYKGRILYRSIYHTLVNPKIR-IPATIEKIHRITNEDI 70 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ P+ +F + F + + I+ + Sbjct: 71 ENAPTIEQVFGQMRSFMRRSIMIF-------HRAEFDLTFIDISAKEIGIFPPSIDYIDT 123 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R + +L + H AL D+ + +++KM Sbjct: 124 REISEIIFGEKKALSWLAERFGFEKPNHRALTDAITTAKLFLKMTRK 170 >gi|254931930|ref|ZP_05265289.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262] gi|293583482|gb|EFF95514.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262] Length = 928 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + R IV D+ETTG + + DRII+ A + + T+ FL P + +L Sbjct: 2 KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 GI+ + +K+ P F + + + ++AHN FD F+ E+ Sbjct: 60 GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104 >gi|228476288|ref|ZP_04060989.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis SK119] gi|314936052|ref|ZP_07843401.1| exonuclease [Staphylococcus hominis subsp. hominis C80] gi|228269571|gb|EEK11077.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis SK119] gi|313655869|gb|EFS19612.1| exonuclease [Staphylococcus hominis subsp. hominis C80] Length = 185 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 71/197 (36%), Gaps = 12/197 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ + I D ET + K I +G V+++D TF + P+ S + Sbjct: 1 MVKNS---FIALDFET--ANKKRTSICSVGMVKVVDNEIV-ETFYTLVNPHD-YFSETHI 53 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGI + +KD P F +F F +AHNA FD+G ++ L+ +N Sbjct: 54 HVHGIHPKDVKDAPDFKEVFPYMLQFI--NQLPVVAHNAAFDMGVLHQSLKHLNIAVPSL 111 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + R ++ H AL D+ + + +++ Sbjct: 112 TYFCSYQLARRTIKAYRYGL---KHLMNHYNLNFHGHHDALNDAKACAMITYRLLKHYDS 168 Query: 181 INFGFKTNEDRFFKEEK 197 + + + + Sbjct: 169 LQSVLQFHGKNLKDRNR 185 >gi|206889195|ref|YP_002247891.1| DNA polymerase III PolC-type, putative [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741133|gb|ACI20190.1| DNA polymerase III PolC-type, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 225 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D E TGLD KND II IGA+ + + F L P + +A+ +H +T Sbjct: 20 FVVIDTELTGLDEKNDSIISIGAITMRERSILIGDIFYRILNPQCKPKD-KAVLIHKLTS 78 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAE 93 L+ P I EF DF + Sbjct: 79 TELEQCPDIKLILKEFIDFIKNRPIV 104 >gi|91216678|ref|ZP_01253643.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC 700755] gi|91185147|gb|EAS71525.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC 700755] Length = 1452 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 73/231 (31%), Gaps = 21/231 (9%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSP 57 I+FD ETTGL + + R I+I V + + P G Sbjct: 2 YIIFDTETTGLPKRWNAPITDTDNWPRAIQIAWQVHDEWGNLVKAK-DYLIRPEGFDIPY 60 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 +A ++HGI+ K + ++ ++ + N FDV + AE R + Sbjct: 61 DAERIHGISTALALQKGESLDMVLAEFNEALSESKFVVGQNVGFDVNVMGAEFHRAQLES 120 Query: 118 LDPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLS 168 L S + + + +Y H A D + Sbjct: 121 LMASMPVLDTCTEKTAKLCQIPGGRGGKFKLPTLTELHQYLFGQPFNEAHNATADVEATT 180 Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 +++++ G+ + + + + +S + + + + + Sbjct: 181 RCFLELIRTGNYTENELQAERSYLQEFKSRHTGPLSKVGLNHINLKKASAQ 231 >gi|15891836|ref|NP_357508.1| DNA polymerase III subunit epsilon [Agrobacterium tumefaciens str. C58] gi|15160320|gb|AAK90293.1| polymerase epsilon subunit [Agrobacterium tumefaciens str. C58] Length = 326 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 68/207 (32%), Gaps = 16/207 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 ++ D ETTGLD + D IIEIG + D ++ L G + +L GI Sbjct: 74 VILDTETTGLDHRTDEIIEIGVITFTFDDQGAIGDVTGIYGGLRQPGVAIPEDITRLTGI 133 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE + + SI IAHNA FD F A Sbjct: 134 TDEMVAGQ----SIDMMRLTSLIAHADLIIAHNAGFDRPFCEAFSPIFRDKAW------- 182 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 S++ + N L G + H A+ D L +V ++ G I Sbjct: 183 ACSVSEIDWRVRGFEGNKLGYLIGQSGYFHDGHRAVDDCFALLEV-LEQRRSGQNITPFA 241 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPL 212 + E + N +D Sbjct: 242 ELYEASGRSRVRIYAENSPFDMKDHLK 268 >gi|306831779|ref|ZP_07464935.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425977|gb|EFM29093.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 827 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 8/181 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ N + + D+E TG + II++G V + + +T+Q + P+ S + Sbjct: 1 MMQVNSQKYAIVDLEATGAHAM-AEIIQVGIVIIENDEIV-KTYQTDVNPHEA-LSEHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITDE L P FS + E + + ++AHN KFD + Q + Sbjct: 58 NLTGITDEQLAKAPDFSQVAQEVFSLIED--CVFVAHNVKFDANLLA--EQLFMEGYELR 113 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +DT+ +A+ +P+ + + H A+ D++ + +++K+ Sbjct: 114 TPRVDTVELAQVFYPTFEKYSL-GNLADALALDLADAHTAISDAYATAQLFLKLKAKMKS 172 Query: 181 I 181 + Sbjct: 173 L 173 >gi|262194028|ref|YP_003265237.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077375|gb|ACY13344.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 4/117 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNG-RKNSPEALKLHGITD 67 + D ETTGLD + I+EI A+ + + V + P PEAL+++G Sbjct: 5 VFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVNGYRR 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 D S +E A HN FD F+ + P Sbjct: 65 RAWADAVSLGDAMAELAPMLEG--AVLAGHNVAFDRRFLEVAWDCVGHRPETLDHHA 119 >gi|119472859|ref|ZP_01614766.1| ribonuclease T [Alteromonadales bacterium TW-7] gi|119444691|gb|EAW25998.1| ribonuclease T [Alteromonadales bacterium TW-7] Length = 227 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 78/208 (37%), Gaps = 13/208 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIG--AVELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++EI +++ D ++T + P G A++ +G Sbjct: 19 VVIDVETAGFNKETDALLEIAVSVLKMDDDGLLSIDQTVHFHVEPFEGANIEQAAIEFNG 78 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q + +AHNA FD GF+NA ++R N Sbjct: 79 IDPFSPLRGAVAEEEAIKEICKVVRKAQKAAGCQRSVIVAHNAAFDHGFLNAAIERNNIK 138 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L C+ GI + H AL D+ +++Y ++ Sbjct: 139 RTPFHPFVSFDTTTLAGLALGQTVLAKACRAAGIEFDNSQAHSALYDTERTAELYCLIVN 198 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNIS 204 ++ D +E P + Sbjct: 199 RWQELGGWPLAPLDESGDDEAAKEPKTT 226 >gi|153838933|ref|ZP_01991600.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] gi|149747604|gb|EDM58532.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] Length = 236 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 4/167 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTG+D++ D+I+ IG V+L LD + + ++C A Sbjct: 52 FVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYICHGQFIKPETAKINGLTPQ 111 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + K P + + + + + +D + Sbjct: 112 DLAKGLP-LDEGMNRLLERITGKVVLAHGCCIEKAFIHAYFSSRYQVEDFPAYFIDTLQI 170 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYI 172 S + H A D+ +++++ Sbjct: 171 EKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAELFL 217 >gi|145298879|ref|YP_001141720.1| DNA polymerase III subunit epsilon [Aeromonas salmonicida subsp. salmonicida A449] gi|142851651|gb|ABO89972.1| DNA polymerase III, epsilon subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 208 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 7/174 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D ETT LD I+ IGAV + + T + + + +++ +HG+ + Sbjct: 32 IALDFETTSLDPARAEIVSIGAVRIKGNRILTGEALSLRVQ-APASLNAQSVVIHGLRHQ 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID--- 125 L+ + + F + + ++ +D+ +N Q+ L I Sbjct: 91 DLQQGMRLEAALRQLLAFIGPRE--LVGYHIAYDLRILNLACQKQWGLTLAQQGIEVSRL 148 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 R++P + DL+ R + + H AL D+ + +Y+++ GG Sbjct: 149 YHDHLYRRYPDAVIDLHLAAIRQHLNLPSLPVHDALSDAITAALIYLRLTQGGP 202 >gi|254227511|ref|ZP_04920943.1| exonuclease family [Vibrio sp. Ex25] gi|262396223|ref|YP_003288076.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] gi|151940123|gb|EDN58949.1| exonuclease family [Vibrio sp. Ex25] gi|262339817|gb|ACY53611.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] Length = 236 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 4/167 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTG+D++ D+I+ IG V+L LD + + ++C A Sbjct: 52 FVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYICHGQFIKPETAKINGLTPQ 111 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + K P + + + + + +D + Sbjct: 112 DLAKGLP-LDEGMNRLLERITGKVVLAHGCCIEKAFIHAYFSSRYQVEDFPAYFIDTLQI 170 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYI 172 S + H A D+ +++++ Sbjct: 171 EKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAELFL 217 >gi|327390689|gb|EGE89029.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA04375] Length = 1463 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GYPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185 R+ L L KR+G+ H + + A LL ++ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + +K + + ++ +++ I Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631 >gi|293372861|ref|ZP_06619235.1| exonuclease [Bacteroides ovatus SD CMC 3f] gi|292632150|gb|EFF50754.1| exonuclease [Bacteroides ovatus SD CMC 3f] Length = 266 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 8/190 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG + DRI+EI +++ + ++ +T + + P + +HGI D Sbjct: 18 FFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTLR--INPEMH-IPEASSAIHGIYDAD 74 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+F + + N L+ + + +D I Sbjct: 75 VVDCPTFKEVAKNIARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMTKRKFVDVQVI 134 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + S ++ + H A D+ +V + S + Sbjct: 135 FHK----MEQRTLSAAYKFYCDKNLEDAHTAEADTRATYEVLKAQLDRYSDLQNDIAFLA 190 Query: 190 DRFFKEEKKT 199 D + Sbjct: 191 DYSSFSKNVD 200 >gi|300773503|ref|ZP_07083372.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] gi|300759674|gb|EFK56501.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 469 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 86/219 (39%), Gaps = 18/219 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + N I EI A+ L D + ++Q + P+ ++ L GIT E Sbjct: 13 YAIVDIETTGGYAANSGITEI-AIYLHDGHQIIDSYQTLINPH-KEIPYHIQMLTGITPE 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D PSF + ++ + F +N ++AHN FD F+ A L+ P Sbjct: 71 MLTDAPSFEDVAADIYSFL--ENKVFVAHNVNFDYSFVYAHLKACGYQWKSPKLCT-VRL 127 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG---- 184 S L +LC+R I +H A D+ ++ +++ + Sbjct: 128 ARNIFKGFSSYSLGNLCQRL--DIPISDRHRAAGDAKATVILFERILSHDTNGLIDSFLQ 185 Query: 185 -------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 T+ D+ E P I + K +K + Sbjct: 186 THAKEQLLPTHIDKVVFERLPAKPGIYIFKNNKGKIIYV 224 >gi|284037590|ref|YP_003387520.1| exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM 74] gi|283816883|gb|ADB38721.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM 74] Length = 205 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGI 65 M +V D+E TG + + II+IGAV D + + P + S + K+H + Sbjct: 1 MPFLVLDLEMTGPEPDYNEIIQIGAVLFDDNWVERGQYLTNVYPENKDAFSSSSEKIHNL 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQ 90 + L+D P + E ++ Q Sbjct: 61 SLAELEDAPMIYDVLPEMEEWICTQ 85 >gi|225856031|ref|YP_002737542.1| DNA polymerase III PolC [Streptococcus pneumoniae P1031] gi|225725805|gb|ACO21657.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae P1031] Length = 1463 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 7/211 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GYPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-F 185 R+ L L KR+G+ H + + A LL ++ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARL 600 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + +K + + ++ +++ I Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNI 631 >gi|187932518|ref|YP_001886209.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum B str. Eklund 17B] gi|187720671|gb|ACD21892.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum B str. Eklund 17B] Length = 243 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 78/227 (34%), Gaps = 16/227 (7%) Query: 7 MRKIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KN 55 M IV+D+E + + II+IGAV+L + + TF + P + Sbjct: 1 MNYIVYDLE---FNHQYSKDNKVSNLTFEIIQIGAVKLNNKLEIVSTFNRLIKPTVHTEI 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 P L IT E + + FS ++++F F + + Sbjct: 58 HPFIKDLTQITTEMVNSEKHFSDVYNDFIKFIGNKEFTVCIWGTSDIKELLKNVKFHNLK 117 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 D L + L+ K P + + H A D++ + ++ K Sbjct: 118 EIDDLRKYIDVQNLASKYIKTPKGTKVGLKTAIEFFNLPIEKEFHDAFNDAYYTAQIFKK 177 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + + + R + ++K L + +K ++++EE Sbjct: 178 LYTSKIKSSIYNNPYSKRISEPKQKVDTKGLLRQFEKMYNRKLSEEE 224 >gi|148996698|ref|ZP_01824416.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70] gi|147757273|gb|EDK64312.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70] Length = 910 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + + I Sbjct: 483 HVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEF 540 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH--HHMANYDAEATGRLL 581 >gi|314933639|ref|ZP_07841004.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus caprae C87] gi|313653789|gb|EFS17546.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus caprae C87] Length = 900 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 6/178 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + ++ T+ + + P L I ++ Sbjct: 6 YAVVDLETTGNQLDYDEIIQIGITFVSNHKII-DTYHSMIR-TDLEIPPFIQALTSIEED 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ + + +D + ++AHN FD+ FI + + Sbjct: 64 MLAQAPYFNEVAEDIYDQIKD--CIFVAHNISFDLNFIKNAFNNCDIQFKPKKVMDTLEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L+ L + + I H A D+ + + IK + + Sbjct: 122 FKIAFPTDKSYQLSELAQAH--DIPLDKAHRADEDATTTAKLMIKAFKKFESLPLDTQ 177 >gi|242373764|ref|ZP_04819338.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis M23864:W1] gi|242348501|gb|EES40103.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis M23864:W1] Length = 900 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 62/178 (34%), Gaps = 6/178 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I +E Sbjct: 6 YAVVDLETTGNQLDYDEIIQIGITFVRNQQII-DTYHSMIR-TDLEIPPFIQALTSIEEE 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ + + ++ + ++AHN FD+ FI N + Sbjct: 64 MLAQAPYFNEVAEDIYNQIKD--CIFVAHNISFDLNFIKNAFDNCNIQFRPKKVMDTLEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L+ L + + I + H A D+ + + IK + + Sbjct: 122 FKIAFPTDKSYQLSELAQSHNIP--LTNAHRADEDATTTAKLMIKAFEKFENLPLDTQ 177 >gi|261419662|ref|YP_003253344.1| hypothetical protein GYMC61_2250 [Geobacillus sp. Y412MC61] gi|319766479|ref|YP_004131980.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp. Y412MC52] gi|261376119|gb|ACX78862.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp. Y412MC61] gi|317111345|gb|ADU93837.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp. Y412MC52] Length = 242 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 48/177 (27%), Gaps = 9/177 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++ D+ETTG + D I+ + A + + T + + P + L GI Sbjct: 62 FVIIDMETTGFSPEQGDEILAMAAAKTVGGVVT-DAYMTLVKPE-KPIPEHISALTGIEA 119 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P + F F S L Sbjct: 120 KDVVFAPPLAEALRTFVPFIAAGVLIGY----HIGHDLAFLRHALWRHYRQKWSGRFVDL 175 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 S + YGI +H A D ++ ++ ++ Q Sbjct: 176 QPMMTLIGHSCPTFDDALACYGIRC--PRRHTADGDVEAMAKLWAILLDEFRQRGID 230 >gi|318060238|ref|ZP_07978961.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG] gi|318076974|ref|ZP_07984306.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF] Length = 647 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 9/175 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ET+GL ++ DR++ + V + D +T F + P P + +HG+T E L Sbjct: 19 VDVETSGLMARRDRVLSVAVVTMGPDGEQTGE-FSTLVDPG---CDPGPVDVHGLTRERL 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P+F I + +AHNA+FD F+ E R R+ Sbjct: 75 SGAPAFGQIAGRLGAMLQD--RVLVAHNAQFDYDFLAHEFARARLYLPVTRRLCTLALNR 132 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + P+ L SL YG+ + H AL D+ +L+ ++ + ++++ Sbjct: 133 QVDPPTRDMKLGSLAAHYGVPRTRA--HDALDDTRVLAGIFRATLREAARLDLPL 185 >gi|262277835|ref|ZP_06055628.1| DNA polymerase III PolC-type (PolIII) [alpha proteobacterium HIMB114] gi|262224938|gb|EEY75397.1| DNA polymerase III PolC-type (PolIII) [alpha proteobacterium HIMB114] Length = 223 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 7/177 (3%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGL+ D+II + V++ ++ T F P + +PE ++H I++ Sbjct: 29 VFDTETTGLNYNSGDKIISVSGVKVQNFQIDTEGKLDEFCDP-MVEITPENEQIHHISNR 87 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTL 127 +K KP+ + S+F FF + + +AHN KFD F+ + L + + + +DT+ Sbjct: 88 MVKGKPNIYDLESKFRGFF--KRSVLVAHNVKFDCNFLISNLSHTKLESRIREAVKLDTV 145 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + +P +L++LC IT + +H +L DS + + ++I ++ N Sbjct: 146 LYSAGVYPDLKSYELSALCDELNITHHDQLRHSSLGDSIITARLFIHLLKKSKAQNI 202 >gi|331015013|gb|EGH95069.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 222 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 62/179 (34%), Gaps = 6/179 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ET+GL+ D+++ IGAV + D + + F+ L + + + + Sbjct: 27 RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKLSPAVLIHGLAP 86 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +P + + ++ + +A FD + L+ L + Sbjct: 87 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLARALKESLDYRLQHAFFDA 142 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 ++ + +H A D+ + +++ + + + Sbjct: 143 AEIAPMLCEQANLRHAGLDDWTQFFGLHAEERHNASADALVTAELALILFSHARRQQID 201 >gi|315222325|ref|ZP_07864231.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211] gi|315188658|gb|EFU22367.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211] Length = 1456 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 80/209 (38%), Gaps = 14/209 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 418 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTDLTGITDE 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF DF + +AHNA FDVGF+N +R + I Sbjct: 476 HVKNAKPLEQVLQEFQDFCQD--TVLVAHNATFDVGFMNVNYERHGLPRITQPVIDTLEF 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R+ L L KR+ +++ H H A D+ + I Sbjct: 534 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLF--------IFINDAAE 583 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + +K + K T Sbjct: 584 KRGVTNLQKLNTDLVDENSYKKARVKHAT 612 >gi|34556664|ref|NP_906479.1| DNA polymerase III subunit epsilon [Wolinella succinogenes DSM 1740] gi|34482378|emb|CAE09379.1| DNA POLYMERASE III EPSILON SUBUNIT DNAQ [Wolinella succinogenes] Length = 206 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + D+ET G D+IIEIGA+ +F+ ++ ++ K+ GIT Sbjct: 15 RFCIVDVETNGSLPAKDQIIEIGAILYQGGKII-DSFESYV--FCKEVPEYITKITGITS 71 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 E LKD PS + + F +A ++AHNA FD GF+ A ++R D L ++ Sbjct: 72 EELKDAPSMKEVLTRF--RLFLGDAVFVAHNALFDYGFLGAMMKRSGMDRLHNRKLC 126 >gi|319939893|ref|ZP_08014248.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV] gi|319810904|gb|EFW07223.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV] Length = 1464 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 80/209 (38%), Gaps = 14/209 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 426 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTDLTGITDE 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF DF + +AHNA FDVGF+N +R + I Sbjct: 484 HVKNAKPLEQVLQEFQDFCQD--TVLVAHNATFDVGFMNVNYERHGLPRITQPVIDTLEF 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R+ L L KR+ +++ H H A D+ + I Sbjct: 542 ARNLYPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLF--------IFINDAAE 591 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + +K + K T Sbjct: 592 KRGVTNLQKLNTDLVDENSYKKARVKHAT 620 >gi|332715841|ref|YP_004443307.1| DNA polymerase III subunit epsilon [Agrobacterium sp. H13-3] gi|325062526|gb|ADY66216.1| DNA polymerase III subunit epsilon [Agrobacterium sp. H13-3] Length = 326 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 71/207 (34%), Gaps = 16/207 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 ++ D ETTGL+ + D IIEIG + D V+ L G E +L GI Sbjct: 74 VILDTETTGLNHRTDEIIEIGVITFTFDDQGTIGDVTGVYGGLRQPGTSIPEEITRLTGI 133 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE + + +I + E IAHNA FD F A Sbjct: 134 TDEMVAGQ----TIDIDRLTSLVEGADLIIAHNAGFDRPFCEAFSPIFRNKAW------- 182 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 S++ + + L G + H A+ D L +V ++ + G Sbjct: 183 ACSVSEVDWSGRGFEGSKLAYLIGQSGYFHDGHRAVDDCFALLEV-LEQVRAGQSGTPFM 241 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPL 212 + +E + N +D Sbjct: 242 ELHEASQHSRVRIYAENSPFDMKDHLK 268 >gi|308180572|ref|YP_003924700.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046063|gb|ADN98606.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 934 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 7/176 (3%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V DIETTG K DRII+IG + + TF + P L GI++ Sbjct: 7 YAVVDIETTGTSVKDGDRIIQIGCAFVKNNKII-NTFATDVNP-LTTVPAVIENLTGISN 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P F + + ++AHN FD+ FIN+ELQR+ L + Sbjct: 65 ARVRKAPPFDDLAGTVYSLLQG--TVFVAHNVNFDLPFINSELQRVGYPELPIQAVDTVS 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +S L L I +H H A D+ + ++I + + + Sbjct: 123 LSQILLPTASSFRLRDLSHLLAIDHNHP--HSADSDAIATAHLFITLQQRLAHLPL 176 >gi|254556626|ref|YP_003063043.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1] gi|254045553|gb|ACT62346.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1] Length = 934 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 7/176 (3%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V DIETTG K DRII+IG + + TF + P L GI++ Sbjct: 7 YAVVDIETTGTSVKDGDRIIQIGCAFVKNNKII-NTFATDVNP-LTTVPAVIENLTGISN 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P F + + ++AHN FD+ FIN+ELQR+ L + Sbjct: 65 ARVRKAPPFDDLAGTVYSLLQG--TVFVAHNVNFDLPFINSELQRVGYPELPIQAVDTVS 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +S L L I +H H A D+ + ++I + + + Sbjct: 123 LSQILLPTASSFRLRDLSHLLAIDHNHP--HSADSDAIATAHLFITLQQRLAHLPL 176 >gi|28378418|ref|NP_785310.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1] gi|28271254|emb|CAD64158.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1] Length = 934 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 7/176 (3%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V DIETTG K DRII+IG + + TF + P L GI++ Sbjct: 7 YAVVDIETTGTSVKDGDRIIQIGCAFVKNNKII-NTFATDVNP-LTTVPAVIENLTGISN 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P F + + ++AHN FD+ FIN+ELQR+ L + Sbjct: 65 ARVRKAPPFDDLAGTVYSLLQG--TVFVAHNVNFDLPFINSELQRVGYPELPIQAVDTVS 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +S L L I +H H A D+ + ++I + + + Sbjct: 123 LSQILLPTASSFRLRDLSHLLAIDHNHP--HSADSDAIATAHLFITLQQRLAHLPL 176 >gi|302879448|ref|YP_003848012.1| Exonuclease RNase T and DNA polymerase III [Gallionella capsiferriformans ES-2] gi|302582237|gb|ADL56248.1| Exonuclease RNase T and DNA polymerase III [Gallionella capsiferriformans ES-2] Length = 303 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 6/62 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR------TFQVFLCPNGRKNSPEALK 61 R +V D ETTG++S D IIE+G V T +F P Sbjct: 41 RGVVVDTETTGINSAQDAIIELGMVLFEYDPDTGEAGRVLGSFDQLEDPGMAIPPESTEV 100 Query: 62 LH 63 Sbjct: 101 HG 102 >gi|227536604|ref|ZP_03966653.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] gi|227243681|gb|EEI93696.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] Length = 469 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 4/116 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + N I EI A+ L D + ++Q + P+ ++ L GIT E Sbjct: 13 YAIVDIETTGGYAANSGITEI-AIYLHDGHQVIDSYQTLINPH-KEIPYHIQMLTGITPE 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 L D PSF + ++ + F +N ++AHN FD FI A L+ P Sbjct: 71 MLTDAPSFEDVAADIYSFL--ENKVFVAHNVNFDYSFIYAHLKACGYQWKSPKLCT 124 >gi|329667930|gb|AEB93878.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii DPC 6026] Length = 320 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 5/170 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70 D+ETTGL DRI E+G +++ TF + P+ K KL+GI + + Sbjct: 36 IDVETTGLSPYRDRITEMGGLKVRHGEVVA-TFSELVKFPDSNKVPAFITKLNGIDEATI 94 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++K + + F + + +N FD+ F+ ++ + L+ + Sbjct: 95 EEKGLPVQEAIKKYREFIGSDPI-VGYNVNFDLNFVYDLAEKYHLTVLNNDYVDVYRLAR 153 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 N L + + I+ +H L D V+ + Q Sbjct: 154 SFYPQEQHNRLLDC--MHRLDIAETQEHRGLDDCLDTKKVFDEFHRLFRQ 201 >gi|253688762|ref|YP_003017952.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755340|gb|ACT13416.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 223 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 73/199 (36%), Gaps = 13/199 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++E+ AV L + + + T + P G P AL +G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + N A +AHNA FD F+ A +R + Sbjct: 80 IDPTNPLRGAVSEYDALHEIFKVVRKGIKEQNCNRAIIVAHNATFDHSFMMAAAERCSLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D++ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCELVN 199 Query: 177 GGSQINFGFKTNEDRFFKE 195 ++ E+ ++ Sbjct: 200 RWKRLGGWPIALEENSLED 218 >gi|225850393|ref|YP_002730627.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1] gi|225646485|gb|ACO04671.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1] Length = 206 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 9/172 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDEFL 70 FD+ETTGLD + D II IGAV++ + T F + P R E + +H IT + Sbjct: 38 FDLETTGLDVEKDEIISIGAVKIKEMKIDLSTSFYRIVKPE-RIPEKENILIHSITASEM 96 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K + +F ++ I + FD+ ++ Q+ P+ I + Sbjct: 97 KKGEDIRDVLPKFLEYIKG--TVLIGYFVSFDISMLSKYTQKFYGFPILNPYIDVSQLYI 154 Query: 131 RRKHPSSRNDLNSLCKRYGI-----TISHRSKHGALLDSHLLSDVYIKMMVG 177 ++K S K I R +H AL DS + +++ +M Sbjct: 155 KKKVKSYTPYEKIKEKSLDQIAEELNIPVRKRHNALYDSITTALIFLSLMKR 206 >gi|206580062|ref|YP_002238188.1| ribonuclease T [Klebsiella pneumoniae 342] gi|288935177|ref|YP_003439236.1| ribonuclease T [Klebsiella variicola At-22] gi|290509235|ref|ZP_06548606.1| ribonuclease T [Klebsiella sp. 1_1_55] gi|206569120|gb|ACI10896.1| ribonuclease T [Klebsiella pneumoniae 342] gi|288889886|gb|ADC58204.1| ribonuclease T [Klebsiella variicola At-22] gi|289778629|gb|EFD86626.1| ribonuclease T [Klebsiella sp. 1_1_55] Length = 215 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A +AHNA FD F +R Sbjct: 80 INPHDPERGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACIAAGMAFDGAQAHSALYDTEQTAQLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|117621105|ref|YP_856588.1| DNA polymerase III subunit epsilon [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562512|gb|ABK39460.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 208 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 3/173 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETT LD I+ IGAV + + T + + S ++ +HG+ Sbjct: 31 WVALDFETTSLDPAQAEIVAIGAVRIQGNRVLTGEALSIRVQ-APASLSEHSVVIHGLRH 89 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDT 126 + L+ + + F + + + Sbjct: 90 QDLQQGMTLEAALRLLLAFIGPRELVGYHIAYDLRILNLACQRCWGLTLAQRGIEVSRLY 149 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 R++P + DL+ I + H AL D+ + +++++ GG Sbjct: 150 HDHLYRRYPDAAIDLHLAAISSHIGLPTLPAHDALSDAITAALIFLRLTRGGP 202 >gi|295693033|ref|YP_003601643.1| ATP-dependent DNA helicase ding [Lactobacillus crispatus ST1] gi|295031139|emb|CBL50618.1| ATP-dependent DNA helicase DinG [Lactobacillus crispatus ST1] Length = 926 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 7/169 (4%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + II+ G + + +T+ + P+ R+ + L GI D Sbjct: 10 FAVVDLETTGTQRENGHHIIQFGCAIIKNLKVV-KTYSFLINPH-REIPQSVVNLTGIHD 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + F + QN ++AHN FD+ F+N EL + + L I Sbjct: 68 QDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEALTNKAIDTVE 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKM 174 L+ L + GI H++ A + LL +++ K+ Sbjct: 126 LAKIAFPTFPSYKLSDLTTQLGIKHLDPHKADSDAYGTAVLLLEIFNKL 174 >gi|126667590|ref|ZP_01738560.1| exonuclease [Marinobacter sp. ELB17] gi|126628016|gb|EAZ98643.1| exonuclease [Marinobacter sp. ELB17] Length = 232 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 4/177 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D+ETTGL+ D++I IGAV + + + F + L + + +HGI Sbjct: 37 RLIVLDLETTGLNPAKDQMIAIGAVAINNNAMPLDDQFDLILRRPELDI-RKTVLIHGIG 95 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E L D+ N + + + + Sbjct: 96 PEALTAGHETEDALLHLLDWMNGDPILAYHSAFDQKFLEKTLRAELGYGENHIWLDVAEL 155 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + R L++ +G+ ++H A D+ + +++ + + +Q Sbjct: 156 MPAFFPTANKQRKGLDNWADTFGLQ--ASARHHAAADAMVTAELTLIALNKAAQQGI 210 >gi|120553834|ref|YP_958185.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8] gi|120323683|gb|ABM17998.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8] Length = 235 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 4/174 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D+ETTGL++ D +I IGAV + N F + L E + +HGI Sbjct: 40 RLIVLDLETTGLNASKDEVIAIGAVAIEGGVIHLNDQFDLILRRPELDI-RETVLIHGIG 98 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E L ++ N + Q P + + Sbjct: 99 PEALTQGYETQDALLYLLEWMNGDPILAYHSAFDQKFLEKTLKSQLGYTLPHVWMDVAEL 158 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + K L+ +G+ I +H A D+ + +++ + + + Sbjct: 159 MPAFFPKATIKGRGLDDWADVFGLEI--SERHHAAADALVTAELALIALNKARK 210 >gi|113460646|ref|YP_718712.1| ribonuclease T [Haemophilus somnus 129PT] gi|123327179|sp|Q0I251|RNT_HAES1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|112822689|gb|ABI24778.1| RNAse T [Haemophilus somnus 129PT] Length = 218 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 70/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G +++ D ++E+ A+ L + + + P G +PE+LK +G Sbjct: 24 VIIDVETAGFNAQTDALLELAAITLKMDENGLLVPDEKCHFHIQPFEGANINPESLKFNG 83 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q + +AHNA FD F+ A +R Sbjct: 84 IDIDNPLRGAISENVAMSELFKMVRHGQKKADCQRSVIVAHNATFDQSFVMAAAERTKIK 143 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I+ + H AL D+ ++++ M+ Sbjct: 144 RNPFHPFSIFDTATLSGFMFGQTVLVKGCQVANISFDGKKAHSALYDAERTAELFCYMVN 203 Query: 177 GGSQIN 182 ++ Sbjct: 204 HLKKLG 209 >gi|213609103|ref|ZP_03368929.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 89 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 6/84 (7%) Query: 158 HGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 HGALLD+ +L++VY+ M G + + F + R E + + + + Sbjct: 8 HGALLDAQILAEVYLAMTGGQTSMTFAMEGETQRQQGEATIQRI---VRQASRLRVVFAS 64 Query: 218 KEELDEHDKTIQTLGKN---AIWD 238 +EEL H+ + + K +W Sbjct: 65 EEELAAHESRLDLVQKKGGSCLWR 88 >gi|150005410|ref|YP_001300154.1| DNA Pol III epsilon chain [Bacteroides vulgatus ATCC 8482] gi|212694908|ref|ZP_03303036.1| hypothetical protein BACDOR_04445 [Bacteroides dorei DSM 17855] gi|237727134|ref|ZP_04557615.1| DNA Pol III epsilon chain [Bacteroides sp. D4] gi|265750418|ref|ZP_06086481.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_33FAA] gi|294777188|ref|ZP_06742645.1| exonuclease [Bacteroides vulgatus PC510] gi|319640629|ref|ZP_07995346.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_40A] gi|149933834|gb|ABR40532.1| DNA Pol III epsilon chain [Bacteroides vulgatus ATCC 8482] gi|212662468|gb|EEB23042.1| hypothetical protein BACDOR_04445 [Bacteroides dorei DSM 17855] gi|229433990|gb|EEO44067.1| DNA Pol III epsilon chain [Bacteroides dorei 5_1_36/D4] gi|263237314|gb|EEZ22764.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_33FAA] gi|294449057|gb|EFG17600.1| exonuclease [Bacteroides vulgatus PC510] gi|317387750|gb|EFV68612.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_40A] Length = 258 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 62/172 (36%), Gaps = 8/172 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + DRI+EI +++ + ++ +T + + P ++ +HGI D Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKVYPNGNEETKT--MRINPEMH-IPEQSSAIHGIYDA 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + E + N L+ + + ID Sbjct: 67 DVADCPTFKEVAKEIARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMMKRKFIDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I + S ++ + H A D+ +V + + Sbjct: 127 IYHK----LEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLKSQLDRYPE 174 >gi|146299070|ref|YP_001193661.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101] gi|146153488|gb|ABQ04342.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101] Length = 1510 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 71/230 (30%), Gaps = 19/230 (8%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + D R I+I + + + P G + Sbjct: 2 YLIFDTETTGLPKRWDAPITDSDNWPRCIQIAWQLHDEMGQLIEHQDYLVKPEGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A ++HGI+ E + + E ++ + + N FDV + AE R+ + Sbjct: 62 AERIHGISTELAEADGITLAEVLEKFNIALSKTKFIVGQNLGFDVNIMGAEFHRMGVESQ 121 Query: 119 DPSRIIDTLSIARRKHP---------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 S + + + Y H A D + Sbjct: 122 MASMPVLDTCTEVTASLLQLPGGRGGKFKLPTLTELHSYLFDQPFAEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 +++++ ++ F + +++ L+ + + Sbjct: 182 CFLELVRREVFTKEELDVPKEYFKEFQERNAEPFKLIGLKHINLKAASDK 231 >gi|241896118|ref|ZP_04783414.1| DNA-directed DNA polymerase III epsilon subunit [Weissella paramesenteroides ATCC 33313] gi|241870632|gb|EER74383.1| DNA-directed DNA polymerase III epsilon subunit [Weissella paramesenteroides ATCC 33313] Length = 970 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 2/166 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETT S++ RII+I + + F + P+ ++L GI E Sbjct: 34 YAVVDLETTRTTSESGRIIQIAIAFVQNKKII-NQFSTLINPH-ESIPRNVVQLTGINAE 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + PSF + N + +N L + Sbjct: 92 MVAGAPSFEEVAESIHTMLTGTIFVAHNVNFDLPFLNAEFQRIGMNTLNLVAIDTVTLSQ 151 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I P R + H++ AL + LL ++ ++ Sbjct: 152 IVWPTAPGFRLVDLTSYLALVHGRPHQADSDALATAELLIQIFNRL 197 >gi|157962392|ref|YP_001502426.1| ribonuclease T [Shewanella pealeana ATCC 700345] gi|157847392|gb|ABV87891.1| ribonuclease T [Shewanella pealeana ATCC 700345] Length = 232 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 73/213 (34%), Gaps = 13/213 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIG--AVELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI +++ D ++T + P G PEAL G Sbjct: 20 VVIDVETAGFNAKTDALLEIAVSMLKMDDEGVLALDKTLHFNIEPFEGANLEPEALAFTG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + +AHNA FD GF+ ++R Sbjct: 80 IDPTSPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVTQAIERNALK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A L C GI +R H AL D+ ++++ ++ Sbjct: 140 RTPFHPFATFDTAALAGLAIGHTVLAKACAMAGIPFDNREAHSALYDTERTAELFCLIVN 199 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209 + ++ + + ++ Sbjct: 200 RWKALGGWPFIADETEEADTNSSEEKAEDYTKN 232 >gi|293396307|ref|ZP_06640585.1| ribonuclease T [Serratia odorifera DSM 4582] gi|291421096|gb|EFE94347.1| ribonuclease T [Serratia odorifera DSM 4582] Length = 226 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIET G +++ D ++EI AV L + + + T + P G PEAL +G Sbjct: 31 VVIDIETAGFNARTDALLEIAAVTLKMDQDGWLQQDETLHFHVEPFEGANLQPEALAFNG 90 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R Sbjct: 91 IDPHNPLRGAVSEYDALHAIFKAVRKGIKDQGCNRAIIVAHNANFDHSFLMAAAERAGLK 150 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C G+ H AL D+ + ++ +++ Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACIAAGMAFDSSQAHSALYDTEQTALLFCELVN 210 Query: 177 GGSQIN 182 ++ Sbjct: 211 RWKRLG 216 >gi|330829910|ref|YP_004392862.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565] gi|328805046|gb|AEB50245.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565] Length = 208 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 54/168 (32%), Gaps = 1/168 (0%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++ D ETT LD + I+ IGAV + + T + + P + Sbjct: 31 QVALDFETTSLDPEQAEIVSIGAVRIQGNRLLTGEALAIKVQPPASLTGQSVVIHGLRHQ 90 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + +++ + + + +L + Sbjct: 91 DLQQGMTLEAALRLLLHFIGPRELVGYHVAYDLRILNLACQKLWELTLPQRGIEVSQLYH 150 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R++P + DL+ + + H AL D+ + +Y+++ Sbjct: 151 DHLYRRYPDAAIDLHLSAICSHLELPSLPAHDALADATTAALIYLRLT 198 >gi|300811276|ref|ZP_07091776.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497736|gb|EFK32758.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 290 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 70/185 (37%), Gaps = 19/185 (10%) Query: 3 RKNKMR----------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52 + +MR + DIETTGL++++D+I+ IGAV+ F + Sbjct: 110 KAERMRVSVAATKQKDFVAVDIETTGLNTESDQILSIGAVK-----HDGTEFYRLIK-QD 163 Query: 53 RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + ++L GIT L F + +N +FD F+N E ++ Sbjct: 164 IDVPKQIVELTGITPAMLDKDGVPLQDVLGELTDFVGDVPI-VGYNFRFDSAFLNREYRK 222 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 L + R++ L ++ YGI H A+ D+ ++ + Sbjct: 223 CGMQELKNEIKDLLPVVKRKEKFLDNYKLQTVLSNYGIENKVP--HNAVSDARATKELAM 280 Query: 173 KMMVG 177 K++ Sbjct: 281 KLIKN 285 >gi|300722831|ref|YP_003712123.1| RNase T [Xenorhabdus nematophila ATCC 19061] gi|297629340|emb|CBJ89939.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Xenorhabdus nematophila ATCC 19061] Length = 211 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 67/200 (33%), Gaps = 13/200 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A+ L + T + P G P AL G Sbjct: 12 VVIDVETAGFNARTDALLEIAAITLKMDENGWLMPADTLHFHVDPFEGANLDPAALAFTG 71 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + N A +AHNA FD F+ A +R Sbjct: 72 IDPTNPLRGAVSEYTALHAIFKMIRKGMKDTNCNRAIMVAHNASFDHNFVMAAAERSGLK 131 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L C I H AL D+ + ++ +++ Sbjct: 132 RIPFHPFATFDTAALSGLVLGQTILAKACITAEIPFDSDQAHSALYDTDRTALLFCELVN 191 Query: 177 GGSQINFGFKTNEDRFFKEE 196 ++ + D Sbjct: 192 RWKRLGGWPLASADSAGDAS 211 >gi|307545334|ref|YP_003897813.1| ribonuclease T [Halomonas elongata DSM 2581] gi|307217358|emb|CBV42628.1| ribonuclease T [Halomonas elongata DSM 2581] Length = 221 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 67/188 (35%), Gaps = 15/188 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D I+EI AV L + T+ + P G AL G Sbjct: 20 VVVDLETGGFNAKGDAILEIAAVTLTMDPEGNLMPDATYAYHVTPFEGANVEQSALDFTG 79 Query: 65 ITDEFLKDKP----------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 I + + + A + HNA FD GF+NA ++R Sbjct: 80 IRLDDPLRRQVAVSEAEALGEIFRPVRKAIKAHGCTRAILVGHNAAFDHGFLNAAVERCA 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + + L C+ GI + + H A D+ ++++ M Sbjct: 140 IKRNPFHPFSSFDTASLAGLIYGQTVLARACRAAGIEFDNGAAHSARYDTERTAELFCAM 199 Query: 175 MVGGSQIN 182 + + Sbjct: 200 INRYKDLG 207 >gi|170727084|ref|YP_001761110.1| ribonuclease T [Shewanella woodyi ATCC 51908] gi|169812431|gb|ACA87015.1| ribonuclease T [Shewanella woodyi ATCC 51908] Length = 222 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 73/201 (36%), Gaps = 13/201 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIG--AVELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI +++ D ++T + P G PEAL G Sbjct: 22 VVIDVETAGFNAQTDALLEIAVTMLKMDDEGILSLDKTLHFHIEPFEGANLEPEALAFTG 81 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + +AHNA FD GF++ ++R Sbjct: 82 IDPTNPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVSQAIERCALK 141 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A L C GI + H AL D+ ++++ ++ Sbjct: 142 RTPFHPFATFDTAALSGLALGHTVLAKACAIAGIPFDNSEAHSALYDTERTAELFCLIVN 201 Query: 177 GGSQINFGFKTNEDRFFKEEK 197 + ++ +E++ Sbjct: 202 RWKALGGWPIAIDEESKEEQE 222 >gi|313123567|ref|YP_004033826.1| 3'-5' exonuclease with to crispr-associated protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280130|gb|ADQ60849.1| 3'-5' exonuclease with to CRISPR-associated protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 290 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 19/185 (10%) Query: 3 RKNKMR----------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52 + +MR + DIETTGL++++D+I+ IGAV+ F + Sbjct: 110 KAERMRASVAATKQKDFVAVDIETTGLNTESDQILSIGAVK-----HDGTEFYRLIK-QD 163 Query: 53 RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + ++L GIT L + F + +N +FD F+N E ++ Sbjct: 164 IDVPKQIVELTGITPAMLDKEGVPLQDVLGELTDFVGDVPI-VGYNFRFDSAFLNREYRK 222 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 L + R++ L ++ YGI H A+ D+ ++ + Sbjct: 223 CGMQELKNEIKDLLPVVKRKEKFLDNYKLQTVLSNYGIENKVP--HNAVSDARATKELAM 280 Query: 173 KMMVG 177 K++ Sbjct: 281 KLIKN 285 >gi|288905684|ref|YP_003430906.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gallolyticus UCN34] gi|288732410|emb|CBI13982.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gallolyticus UCN34] Length = 834 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 8/181 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ N + + D+E TG + II++G V + + +T+Q + P+ S + Sbjct: 8 MMQVNSQKYAIVDLEATGAHAM-AEIIQVGIVIIENDEIV-KTYQTDVNPHEA-LSEHII 64 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITDE L P FS + E + + ++AHN KFD + Q + Sbjct: 65 NLTGITDEQLAKAPDFSQVAQEVFSLIED--CVFVAHNVKFDANLLA--EQLFMEGYELR 120 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +DT+ +A+ +P+ + + H A+ D++ + +++K+ Sbjct: 121 TPRVDTVELAQVFYPTFEKYSL-GNLADALALDLADAHTAISDAYATAQLFLKLKAKMKS 179 Query: 181 I 181 + Sbjct: 180 L 180 >gi|78779006|ref|YP_397118.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9312] gi|78712505|gb|ABB49682.1| DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9312] Length = 259 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 73/230 (31%), Gaps = 12/230 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + ++ D ETTGLD D +IEIG + + +F + + N ++ Sbjct: 37 KILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLLPVNNNEAEHVNCISAEVT 96 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + +D +F + DF +AHN +FD + + S Sbjct: 97 NISQPWEDGLNFFLKLVDCSDFI-------VAHNVEFDKKWFGKGRLPMLNKKWICSLDD 149 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVGGSQIN 182 S + +L + HR+ S + ++++ ++ Sbjct: 150 INWSFQKSLKTRPSVTDLALSFSIPVWNLHRALSDCFYISEVFKKCDNLEELLLKATEPR 209 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 F +K + K ++T +E D ++ L Sbjct: 210 FLYKALVSYEDRSLAKNAGFRWNSPVQGAWSRKLTTDEAKNLDFRVEILN 259 >gi|56419989|ref|YP_147307.1| hypothetical protein GK1454 [Geobacillus kaustophilus HTA426] gi|56379831|dbj|BAD75739.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 242 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 48/177 (27%), Gaps = 9/177 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++ D+ETTG + D I+ + A + + T + + P + L GI Sbjct: 62 FVIIDMETTGFSPEQGDEILAMAAAKTVGGVVT-DAYMTLVKPE-KPIPEHISALTGIEA 119 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P + F F S L Sbjct: 120 KDVVFAPPLAEALRTFVPFIAAGVLIGY----HIGHDLAFLRHALWRHYRQKWSGRFLDL 175 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 S + YGI +H A D ++ ++ ++ Q Sbjct: 176 QPMMTLIGHSCPTFDDALACYGIRC--PRRHTADGDVEAMAKLWAILLDEFRQRGIE 230 >gi|240173340|ref|ZP_04751998.1| DNA polymerase III subunit epsilon [Mycobacterium kansasii ATCC 12478] Length = 329 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 72/201 (35%), Gaps = 7/201 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII I + L + ++ L P P + +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISIAVLGLDADGRVEQSLVSLLNPG---VDPGSTHIHGLTAGML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D+P F+ I + + +AHN FD F+ AE + + + + Sbjct: 75 EDQPQFADIVGDVVELLRG--RTLVAHNVAFDYAFLAAEAEMAGAELPVDTVMCTVELSR 132 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R + L +L +G+ H A D+ +L+ V + + + Sbjct: 133 RLELGVDNLRLETLAAHWGV--IQERPHDAFDDARVLTGVLAAALERAREREVWLPVHPV 190 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 + V + L Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211 >gi|28871797|ref|NP_794416.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000] gi|28855049|gb|AAO58111.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 204 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 3/168 (1%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R EI V + R FQ + G + L GI+ Sbjct: 4 RVAVIDFETTGISPNPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF + + ++ ++ Sbjct: 62 NNMIRTAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L S + +HR+ A + ++L + + ++ Sbjct: 122 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAIADAEMAANLTAYLTNEL 169 >gi|33151799|ref|NP_873152.1| ribonuclease T [Haemophilus ducreyi 35000HP] gi|54036330|sp|Q7VND8|RNT_HAEDU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|33148020|gb|AAP95541.1| ribonuclease T [Haemophilus ducreyi 35000HP] Length = 214 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET GL++K D ++E+ A+ + Y ++ + P + ++LK +G Sbjct: 21 VIIDVETAGLNAKTDALLELAAITVKMDQQGYLVPDQKCHFHIQPFENANINADSLKFNG 80 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I P + Q A +AHNA FD F+ A ++RIN Sbjct: 81 IDIHNPLRGAVAEAIAIPEMFKMVRRAIKEQGCQRAVIVAHNATFDQAFLQAAVKRINAK 140 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L C+ I + H AL D+ ++++ M+ Sbjct: 141 RDPFHPFAMFDTASLAGLMYGQTVLVKACQIANIAFDGKQAHSALYDTEKTTELFCAMVN 200 Query: 177 GGSQIN 182 + Sbjct: 201 RLKDLG 206 >gi|302342239|ref|YP_003806768.1| DNA polymerase III, subunit epsilon [Desulfarculus baarsii DSM 2075] gi|301638852|gb|ADK84174.1| DNA polymerase III, epsilon subunit [Desulfarculus baarsii DSM 2075] Length = 240 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 11/182 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTG+D D ++ GAV L + F + P G + Sbjct: 47 FVVLDLETTGVDLARDGVVSAGAVRLRGGRVLLGQYFDEMILPQGEVPASSITIHGLTPQ 106 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +P +AHNA FD+ FI+ ++ + L + Sbjct: 107 RLAAGRPLAQVFDDLAG---FIGADIVVAHNAGFDLHFIDRHMRAHHGLALQNLALCTLR 163 Query: 128 SIARRKHPSSRNDLNSLCKRY-------GITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 PS + + + +H A+ D+ + + ++ +M+ + Sbjct: 164 LCRALLLPSDPFGVGRHKGQCRLDAIAERFGLDTPQRHTAIGDALVTALIFQRMLAMMEE 223 Query: 181 IN 182 Sbjct: 224 RG 225 >gi|305680841|ref|ZP_07403648.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] gi|305659046|gb|EFM48546.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] Length = 2479 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 6/97 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG + DRI+E+ V L D + + + P R S A+ D Sbjct: 2085 YAVVDVETTGFSTA-DRIVELAIVVLDDDGENLYEWSTLINP-MRDISNGAIHGITAKDV 2142 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 P+F + + ++AHNA FDV Sbjct: 2143 A--VAPTFDQVADDVAALLEG--KIFVAHNAIFDVRM 2175 >gi|227878664|ref|ZP_03996579.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01] gi|256850383|ref|ZP_05555811.1| ATP-dependent DNA helicase [Lactobacillus crispatus MV-1A-US] gi|262046469|ref|ZP_06019431.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus MV-3A-US] gi|227861728|gb|EEJ69332.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01] gi|256712780|gb|EEU27773.1| ATP-dependent DNA helicase [Lactobacillus crispatus MV-1A-US] gi|260573340|gb|EEX29898.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus MV-3A-US] Length = 926 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 7/169 (4%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + II+ G + + +T+ + P+ R+ + L GI D Sbjct: 10 FAVVDLETTGTQRENGHHIIQFGCAIIKNLKVV-KTYSFLINPH-REIPQSVVNLTGIHD 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + F + QN ++AHN FD+ F+N EL + + L I Sbjct: 68 QDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEALTNKAIDTVE 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKM 174 L+ L + GI H++ A + LL +++ K+ Sbjct: 126 LAKIAFPTFPSYKLSDLTTQLGIKHLDPHKADSDAYGTAVLLLEIFNKL 174 >gi|225021279|ref|ZP_03710471.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC 33806] gi|224946012|gb|EEG27221.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC 33806] Length = 2493 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 6/97 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG + DRI+E+ V L D + + + P R S A+ D Sbjct: 2099 YAVVDVETTGFSTA-DRIVELAIVVLDDDGENLYEWSTLINP-MRDISNGAIHGITAKDV 2156 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 P+F + + ++AHNA FDV Sbjct: 2157 A--VAPTFDQVADDVAALLEG--KIFVAHNAIFDVRM 2189 >gi|308049484|ref|YP_003913050.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica DSM 9799] gi|307631674|gb|ADN75976.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica DSM 9799] Length = 249 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTG++ D II IG V + + + PN R + E++ +HGIT Sbjct: 59 FVALDFETTGMNPDQDAIISIGLVPFTQQRIQCKGSAHWIVNPN-RPLNEESVVIHGITH 117 Query: 68 EFLKDKP 74 L+ P Sbjct: 118 SDLEQAP 124 >gi|308190354|ref|YP_003923285.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER] gi|307625096|gb|ADN69401.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER] Length = 1461 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 2/188 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FDIETTGL + IIE G++ + K R Q F+ Sbjct: 426 YVSFDIETTGLCPRFAEIIEYGSLPIHSNMKYGRKTQFFIKCQEPIKPFTENLTGITNAM 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 K + ++ N +AHNA+FD F+ + ++ + + + I + Sbjct: 486 IEKSGLELKEALQKIYNDLNG--KIALAHNARFDFNFLKEKFRQAKIEFPNVTVIDTLIV 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + ++ L + R G+ H D+ +L++V++ +M + Sbjct: 544 SRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDYDAKVLAEVWVALMDELGKKGILTFNQ 603 Query: 189 EDRFFKEE 196 + + K++ Sbjct: 604 LNSYIKDD 611 >gi|312110613|ref|YP_003988929.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp. Y4.1MC1] gi|311215714|gb|ADP74318.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp. Y4.1MC1] Length = 245 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 8/175 (4%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + D I+ + A + + T+ +CP + P L GIT + Sbjct: 66 IIDMETTGFSPQHGDEILAMAAAKTV-RGAVKETYYTLVCPE-KAIPPHISALTGITAKD 123 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P F F + I ++ D+ F+N L + Sbjct: 124 VQYAPRLHEAMRSFLSFISG--GVMIGYHIGHDLSFLNHFLWTHYRTKWAARFFDMQPIA 181 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + ++L IS +H A D +++++ +++ + N Sbjct: 182 EMVQRRWFPTLDDAL---GHYGISCERRHTADGDVWAMAELWAQLLAELKRNNIE 233 >gi|127512449|ref|YP_001093646.1| ribonuclease T [Shewanella loihica PV-4] gi|126637744|gb|ABO23387.1| RNAse T [Shewanella loihica PV-4] Length = 257 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 73/208 (35%), Gaps = 13/208 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI +++ D ++T + P G PEAL +G Sbjct: 40 VVIDVETAGFNAQTDALLEIAVTLLKMDDNGDLVLDKTLHYHIEPFEGANLEPEALAFNG 99 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + N + +AHNA FD GF+ ++R Sbjct: 100 IDPSNPLRGAVSEKEAFLEIFKEVKKHQKASNCHRSIIVAHNAAFDHGFVTQAIERNALK 159 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A L C+ GI ++ H AL D+ ++++ ++ Sbjct: 160 RTPFHPFATFDTAALSGLALGHTVLAKACEIAGIPFDNKEAHSALYDTERTAELFCHIVN 219 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNIS 204 + ++ S Sbjct: 220 KWKALGGWPVATPSEETGSDEAASEPAS 247 >gi|330983976|gb|EGH82079.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M301315] Length = 551 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 5/121 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNR-TFQVFLCPNGRKNS-PEALKL 62 R VFD ETTGL + +D+I++ V L + + V + P+ + A+ Sbjct: 7 RLCVFDTETTGLSAHHDQIVQFAGVGLDPELNIIPGDEIVLDVLMRPDVVPSPGAFAVTG 66 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 I+ P F + F ++ +N + + N Sbjct: 67 ISISHLMQHGIPEFEAAGHIRNWFMRQEGTNITGYNTQRFDDEVIRNTFYRNMIDPYQHE 126 Query: 123 I 123 Sbjct: 127 W 127 >gi|29346773|ref|NP_810276.1| DNA Pol III epsilon chain [Bacteroides thetaiotaomicron VPI-5482] gi|29338670|gb|AAO76470.1| DNA Pol III Epsilon Chain [Bacteroides thetaiotaomicron VPI-5482] Length = 277 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 66/203 (32%), Gaps = 14/203 (6%) Query: 4 KNKMR------KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56 K +M+ + FD+ETTG + DRI+EI +++ + ++ +T + + P Sbjct: 16 KKEMKLNLKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEETKT--MRINPEMH-IP 72 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + +HGI D + D P+F + + N L+ Sbjct: 73 EASSAVHGIYDADVADCPTFKEVAKNVARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDI 132 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + +D I + S ++ S H A D+ +V + Sbjct: 133 DMTKRKFVDVQVIFHK----MEQRTLSAAYKFYCEKSLEDAHTAEADTRATYEVLKAQLD 188 Query: 177 GGSQINFGFKTNEDRFFKEEKKT 199 + + + Sbjct: 189 RYPDLQNDIAFLAEYSSFTKNVD 211 >gi|116630207|ref|YP_815379.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri ATCC 33323] gi|282852827|ref|ZP_06262168.1| exonuclease [Lactobacillus gasseri 224-1] gi|116095789|gb|ABJ60941.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus gasseri ATCC 33323] gi|282555935|gb|EFB61556.1| exonuclease [Lactobacillus gasseri 224-1] Length = 320 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 53/169 (31%), Gaps = 3/169 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ETTGL DRI E+G +++ TF + P + DE Sbjct: 36 IDVETTGLSPYRDRITEMGGLKVRHGEVVA-TFSELVKFPDSNKVPTFITKLNGIDEAAI 94 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 ++ + + + +N FD+ F+ ++ + L+ + Sbjct: 95 EEKGLPVQEAIKKYREFIGSDPIVGYNVNFDLNFVYDLAEKYHLTVLNNDYVDVYRLARS 154 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 N L R I +H L D V+ + Q Sbjct: 155 FYPQERHNRLLDCMHRMNIA--ENQEHRGLDDCLDTKKVFDEFHKLFKQ 201 >gi|293380924|ref|ZP_06626958.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus 214-1] gi|290922499|gb|EFD99467.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus 214-1] Length = 926 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 7/169 (4%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + II+ G + + +T+ + P+ R+ + L GI D Sbjct: 10 FAVVDLETTGTQRENGHHIIQFGCAIIKNLKVV-KTYSFLINPH-REIPQSVVNLTGIHD 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + F + QN ++AHN FD+ F+N EL + + L I Sbjct: 68 QDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEALTNKAIDTVE 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKM 174 L+ L + GI H++ A + LL +++ K+ Sbjct: 126 LAKIAFPTFPSYKLSDLTTQLGIKHLDPHKADSDAYGTAVLLLEIFNKL 174 >gi|262194304|ref|YP_003265513.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077651|gb|ACY13620.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 4/117 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNG-RKNSPEALKLHGITD 67 + D ETTGLD + I+EI A+ + + V + P PEAL+++G Sbjct: 5 VFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVNGYRR 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 D S +E A HN FD F+ A + P + Sbjct: 65 RVWADAVSLGDAMAELAPMLEG--AVLAGHNVAFDRRFLEAAWDYVGHRPENLDHHA 119 >gi|255522480|ref|ZP_05389717.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes FSL J1-175] Length = 807 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + R IV D+ETTG + + DRII+ A + + T+ FL P + +L Sbjct: 2 KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 GI+ + +K+ P F + + + ++AHN FD F+ E+ Sbjct: 60 GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104 >gi|238026493|ref|YP_002910724.1| exonuclease, DNA polymerase III subunit epsilon family/GIY-YIG catalytic domain-containing protein [Burkholderia glumae BGR1] gi|237875687|gb|ACR28020.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia glumae BGR1] Length = 381 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EIG VE+ + T+ + P + +L GITD + Sbjct: 21 FVDLETTGGSATEHRITEIGVVEVGPNGVS--TWSSLIDP-CQPIPAFIQQLTGITDAMV 77 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + PSF+SI + + + AHNA FD GF Sbjct: 78 RGAPSFASIAAALYARLEGRFFI--AHNASFDRGF 110 >gi|213964373|ref|ZP_03392587.1| exonuclease [Capnocytophaga sputigena Capno] gi|213952985|gb|EEB64353.1| exonuclease [Capnocytophaga sputigena Capno] Length = 164 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 7/166 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + + IG V + + T+ + P S ++HG++ Sbjct: 4 FVALDFET--ANQYRSSVCSIGLVFVENNEIV-DTYYQLIKPAPNFYSYFNTQVHGLSQY 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F +++E + +AHN+ FD G + L + Sbjct: 61 DTENAPLFPEVWTEILPKIKD--LPLVAHNSMFDEGCLREVLAYYALPQHTNPFFCTLRA 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + LN++ +G + H AL D+ + + +++ Sbjct: 119 ARKSLPQLVNHKLNTVSAYFGFD--LKQHHHALADAEACAHIALEL 162 >gi|71657888|ref|XP_817452.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL Brener] gi|70882645|gb|EAN95601.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma cruzi] Length = 1417 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFDIE+TGL++ D IIEI A +F + P R E + +H ITD Sbjct: 774 RLVVFDIESTGLNTATDAIIEIAAW----DPVEATSFSSLVDPE-RSIPQETMAIHHITD 828 Query: 68 EFLKDKPSFSSIFSEFWDFFNE 89 ++ P + + Sbjct: 829 GMVRGAPRLPEVTRALARYLRL 850 >gi|315658260|ref|ZP_07911132.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus lugdunensis M23590] gi|315496589|gb|EFU84912.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus lugdunensis M23590] Length = 893 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 2/165 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + D T+ + + P L I ++ Sbjct: 6 YAVVDLETTGNQLDYDEIIQIGITFVRDQKIVG-TYHSMIN-TDVEIPPFIQALTSIEED 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK P F + + + + + + I+ P ++ Sbjct: 64 MLKQAPYFHEVAEDVYKQLKDSVFVAHNVSFDLTFIKKAFKRNHIHFQPKKVIDTVELFK 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 IA S + + + +HR+ A + L+ + K Sbjct: 124 IAFPTDKSYQLSELAEAHHIPLDNAHRADEDATTTAKLMIKAFQK 168 >gi|309799630|ref|ZP_07693854.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302] gi|308116752|gb|EFO54204.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302] Length = 681 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 6/178 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 426 YVVFDVETTGLSAIYNDLIQVAASKMYKGNIIAE-FDEFINP-GHHLSAFTTELTGITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F + +AHNA FDVGF+NA +R + I Sbjct: 484 HVKNAKPLVQVLKEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKITQPVIDTLEF 541 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 R+ L L KR+G+ H + + A LL ++ N Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTNLA 599 >gi|307546031|ref|YP_003898510.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581] gi|307218055|emb|CBV43325.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581] Length = 240 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 62/194 (31%), Gaps = 17/194 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60 I + M + D+ETTGLD++ I+ IG V L + P R E++ Sbjct: 45 IGETPM--VALDMETTGLDARRHAIVSIGVVPFTLGRIALRERRYWIVRPQ-RTLHAESV 101 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-----------GFINAE 109 H IT ++ P F I + + + + + G + Sbjct: 102 TFHHITHTDIEQAPEFGEILGDLLEVLAGRLVVVHYRHIERLFLDDSVKARLGEGLMFPM 161 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + + P + L RYG+ H AL D+ ++ Sbjct: 162 IDTMAVEARFHRQSWLARFKRWIGRPPASIRLYDSRTRYGLP--LYQGHHALTDALATAE 219 Query: 170 VYIKMMVGGSQINF 183 + + Q Sbjct: 220 LLQAQIANHYQPEM 233 >gi|260913082|ref|ZP_05919564.1| ribonuclease T [Pasteurella dagmatis ATCC 43325] gi|260632669|gb|EEX50838.1| ribonuclease T [Pasteurella dagmatis ATCC 43325] Length = 221 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 70/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G ++K D ++E+ A V++ D ++ + P G +PE+L+ +G Sbjct: 28 VIIDVETAGFNAKTDALLELAAITVKMDDNGLLQPDQKCHFHIEPFEGANINPESLQFNG 87 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q + +AHNA FD FI A +R Sbjct: 88 IDIHNPLRGAVSETHAITELFRMVRKGQKDADCQRSIIVAHNAVFDQSFIMAAAERTGVK 147 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I + H AL D+ ++++ M+ Sbjct: 148 RNPFHPFGMFDTATLSGFMLGQTVLVKACQVAKIPFDGKQAHSALYDTERTTELFCYMVN 207 Query: 177 GGSQIN 182 + Sbjct: 208 HLKSLG 213 >gi|256843260|ref|ZP_05548748.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus 125-2-CHN] gi|256614680|gb|EEU19881.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus 125-2-CHN] Length = 926 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 7/169 (4%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + II+ G + + +T+ + P+ R+ + L GI D Sbjct: 10 FAVVDLETTGTQRENGHHIIQFGCAIIKNLKVV-KTYSFLINPH-REIPQSVVNLTGIHD 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + F + QN ++AHN FD+ F+N EL + + L I Sbjct: 68 QDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEALTNKAIDTVE 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKM 174 L+ L + GI H++ A + LL +++ K+ Sbjct: 126 LAKIAFPTFPSYKLSDLTTQLGIKHLDPHKADSDAYGTAVLLLEIFNKL 174 >gi|262194198|ref|YP_003265407.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077545|gb|ACY13514.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 4/117 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNG-RKNSPEALKLHGITD 67 + D ETTGLD + I+EI A+ + + V + P PEAL+++G Sbjct: 5 VFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVNGYRR 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 D S +E A HN FD F+ A + P + Sbjct: 65 RAWADAVSLGDAMAELAPMLEG--AVLAGHNVAFDRRFLEAAWDYVGHRPENLDHHA 119 >gi|254786953|ref|YP_003074382.1| ribonuclease T [Teredinibacter turnerae T7901] gi|237685615|gb|ACR12879.1| ribonuclease T [Teredinibacter turnerae T7901] Length = 211 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 62/186 (33%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCPNG---------RKNS 56 ++ D+ET G ++ D ++EI AV L + + TF + P Sbjct: 21 VIIDVETGGFNAATDALLEIAAVTLHMDDNGFLQRDETFSFHVEPFEGANIEKAALEFTG 80 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + + + + A + HNA FD+ F+NA R + Sbjct: 81 IDLESEDREAVPEAIALGDIFAGVRKAVKGYGCNRAVLVGHNAHFDLNFLNAAAARSDIK 140 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L + CK G+ S+R H A D+ +D++ M+ Sbjct: 141 RNPFHPFSCFDTATLCGLIFGHTVLATSCKLAGLEFSNREAHSAAYDAEKTADLFCLMVN 200 Query: 177 GGSQIN 182 + Sbjct: 201 KWKALG 206 >gi|226948601|ref|YP_002803692.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A2 str. Kyoto] gi|226844461|gb|ACO87127.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A2 str. Kyoto] Length = 855 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 89/213 (41%), Gaps = 11/213 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+E+TG++ D I++I +++ + + +FQ FL P + Sbjct: 494 NVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIPKKSVGDSYLVH-GFSDQ 552 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ + + +F +F + + HN FD+ +N+EL+R++ + + DTL Sbjct: 553 FLKENGENKKVVLKDFLEFIKD--TVIVGHNVTFDISILNSELERLSLEKANFKTYYDTL 610 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF---- 183 IARR +PS N + +S H A+ D DV + M+ + Sbjct: 611 DIARRFYPSLTNHKLETLSKL-FNTETKSSHDAMDDILATKDVLMAMLKEKVKPTIINRM 669 Query: 184 ---GFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 G + EE + +S +K K + Sbjct: 670 VVYGKYIKKFEPIYEEITNLKKLSYIKNPKDII 702 >gi|187780046|ref|ZP_02996519.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC 15579] gi|187773671|gb|EDU37473.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC 15579] Length = 855 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 4/176 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+E+TG+++ D I++I +++ + + F+ FL P + Sbjct: 494 NVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIEKFERFLTPKKYVGDSYLVHGFSDQF 553 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 K + + ++ I HN FD+ +N+ELQR+ + + DTL Sbjct: 554 LKEKGEDKERVLKDFLE---FVKDTVVIGHNITFDITILNSELQRLGLEKANFKTYYDTL 610 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IARR +PS N + +S H A+ D DV + M+ + Sbjct: 611 DIARRFYPSLTNHKLETLSKL-FNTETKSSHDAMDDILATKDVLMVMLKEKVEPTI 665 >gi|326800451|ref|YP_004318270.1| exonuclease RNase T and DNA polymerase III [Sphingobacterium sp. 21] gi|326551215|gb|ADZ79600.1| Exonuclease RNase T and DNA polymerase III [Sphingobacterium sp. 21] Length = 330 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 79/201 (39%), Gaps = 9/201 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG++ +DRI+EI ++ + D S+ +T + + P + LHG+ DE Sbjct: 11 FFDLETTGVNVASDRIVEISILKAMPDGSEQVKTMR--INPE-MPIPLSSSLLHGVYDED 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P+F + E DF + + N + L+ ++ + +D +I Sbjct: 68 IKDAPTFKQVAQEIADFLEDTDLAGYNSNKFDIPVLMEEFLRAGINFDIENRKFVDVQNI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + ++ + + H A D +V + + + + K+ Sbjct: 128 FHQ----MEQRTLKAAYKFYCDRTLENAHSAEADVRATYEVLLAQVQRYDGVEWEDKSGN 183 Query: 190 DRF-FKEEKKTVPNISLLKRD 209 K + + + L R Sbjct: 184 KSIPVKNDVDALHRFTNLNRP 204 >gi|70732988|ref|YP_262761.1| exonuclease [Pseudomonas fluorescens Pf-5] gi|68347287|gb|AAY94893.1| exonuclease [Pseudomonas fluorescens Pf-5] Length = 235 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSP 57 R +V D+ETTGL+ D+++ IGAV + D + ++ F+ L G K SP Sbjct: 40 RWVVVDVETTGLNLNRDQVLSIGAVVIEDGAIDFSQQFERTLQRQGHKLSP 90 >gi|332652795|ref|ZP_08418540.1| exonuclease [Ruminococcaceae bacterium D16] gi|332517941|gb|EGJ47544.1| exonuclease [Ruminococcaceae bacterium D16] Length = 195 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 10/176 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I FD+ET +S NDRI IG V +++ + P R S + L GIT Sbjct: 4 RYIAFDVET--PNSANDRISAIG-VTVVERGAVVEQHDYLVNPETRFAS-FNVALTGITP 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + DKP+F ++ E F+ IAHNA FD+ + L+ T Sbjct: 60 EMVADKPAFPQLWQELEPIFDS--GLLIAHNAPFDMSVLAKCLRDYGIRWRPSVSYACTC 117 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++RR P + LN+LC G+ H A DS ++ + + G+ + Sbjct: 118 QMSRRLLPQLPNHKLNTLCDFLGL---ELDHHRAGSDSLACGEILLHHLHSGADLT 170 >gi|240142188|ref|YP_002966698.1| putative Exonuclease [Methylobacterium extorquens AM1] gi|240012132|gb|ACS43357.1| putative Exonuclease [Methylobacterium extorquens AM1] Length = 190 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 8/63 (12%) Query: 11 VFDIETTGLD--------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 FD ETTG + RI+EIG V TF+ FL P+G E L Sbjct: 4 AFDTETTGTPAPGLPLRHPRQPRIVEIGCVLYYPDGAVADTFRTFLRPDGFTIPMEMRDL 63 Query: 63 HGI 65 HGI Sbjct: 64 HGI 66 >gi|110801811|ref|YP_697750.1| helicase/exonuclease [Clostridium perfringens SM101] gi|110682312|gb|ABG85682.1| helicase/exonuclease [Clostridium perfringens SM101] Length = 870 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 74/213 (34%), Gaps = 11/213 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IVFD+E+TG+D D II+I A++L + F+ FL + Sbjct: 503 NIIVFDVESTGVDVTEDEIIQIAAIKLNKNVEVVDKFEKFLKNKKSVKDSYYVHGFSDEM 562 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + +++ + HN ++D+ + +EL+R N DTL Sbjct: 563 LQRIGEEKEKVLKEFVE---YSKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYDTL 619 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-------IKMMVGGSQ 180 I RR +P + N + H+ H A+ D ++ IK Sbjct: 620 DIYRRFYPGNINYKLENLSKV-YDTKHKPSHDAMDDIIATGELLVRAINEKIKETSMERM 678 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 ++ + I+ KR L Sbjct: 679 ALMSKHLKAFTAISKKLNELFQIAERKRPYELV 711 >gi|72162746|ref|YP_290403.1| exonuclease [Thermobifida fusca YX] gi|71916478|gb|AAZ56380.1| exonuclease [Thermobifida fusca YX] Length = 313 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 9 KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCP 50 V D+ETTGL + R+ EI V + R F + P Sbjct: 31 YAVVDVETTGLRPEGGARVCEIAVVRMRGDGTVLREFTTLVDP 73 >gi|227510342|ref|ZP_03940391.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189994|gb|EEI70061.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 945 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 7/172 (4%) Query: 9 KIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V DIETTG D D RII+ + T+ + P R+ ++L GIT Sbjct: 7 YAVVDIETTGTDMSVDNRIIQFSCTLVAHGKIV-ETYVSDINPQ-REVPERIIQLTGITP 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E LK P+F + S+ + + ++AHN FD F+N E QR+ LD I Sbjct: 65 ERLKKAPTFDQVSSKLYKLLSG--TVFVAHNVNFDFPFLNGEFQRVGYPELDIEAIDTVT 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 S L L + I +H H A D+ + + + ++ Sbjct: 123 LSQILLPTLSSYRLQDLSAYFNIIHNHP--HTADSDALATAKLLLILLRQVK 172 >gi|170738412|ref|YP_001767067.1| DNA polymerase III subunit epsilon [Methylobacterium sp. 4-46] gi|168192686|gb|ACA14633.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] Length = 223 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 70/168 (41%), Gaps = 4/168 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGLD + D I+ + A+ + D T+ + + + + R +SPEA+K+H + + Sbjct: 32 VALDCETTGLDPRRDEIVAVAAIRIRGDRILTSESLRATVR-SDRPSSPEAIKVHRLLNA 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +++ ++ F + + + + + + +P + Sbjct: 91 EIREAEPLDAVLPALLRFIGGRPIVGYYTEFDVRMLDKSVRRQFGIRLPNPRIDVSSLYH 150 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + R + DL+ + + +H A D+ + + +Y+++ Sbjct: 151 AAKYRDAPDYVKIDLSFARILEDLGLPALPQHDAFNDALMTAMIYLQL 198 >gi|315446380|ref|YP_004079259.1| DNA polymerase III subunit epsilon [Mycobacterium sp. Spyr1] gi|315264683|gb|ADU01425.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. Spyr1] Length = 333 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 75/201 (37%), Gaps = 7/201 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RI+ + A+ L D ++ L P P +HG+T E L Sbjct: 22 VVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPG---VDPGPTHVHGLTAEML 78 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + +P+F + + + +AHN FD F++AE + + + + + Sbjct: 79 EGQPTFGDVVGDLCEVLRG--RTLVAHNVGFDYSFLSAEAELVGAELPIDTVMCTVELAR 136 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R L +L +G+T H AL D+ +L+ + ++V + + Sbjct: 137 RLDLGLENLRLETLAAHWGVTQMRP--HDALDDAMVLAQILKPVLVRAQERRKWLPVHPV 194 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 V + Sbjct: 195 GRRTWPNGRVTHDEFRPLKAL 215 >gi|295398569|ref|ZP_06808601.1| possible DNA-directed DNA polymerase III epsilon subunit [Aerococcus viridans ATCC 11563] gi|294973170|gb|EFG48965.1| possible DNA-directed DNA polymerase III epsilon subunit [Aerococcus viridans ATCC 11563] Length = 957 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 7/180 (3%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG DRII+IG + + ++ F + PN ++ E KL GIT+ Sbjct: 8 YAVLDLETTGSTYDNGDRIIQIGVAFVQNGQVVDQ-FATDIFPN-QEIPREITKLTGITN 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +K P F ++ W N +AHN FD F++ Q + R+ Sbjct: 66 EQVKRAPKFEAVAEILWQKL--SNTVIVAHNIGFDYKFLDKSFQAHGYPAMTHDRVDTVE 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + L C +G I + H A+ D+ + + I + + Sbjct: 124 MVRTLFPTADSYKLGEFCLAHG--IQLENAHTAIDDAVATAHILIMCQEKVATMPVELFA 181 >gi|307730690|ref|YP_003907914.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003] gi|307585225|gb|ADN58623.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003] Length = 383 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 7/103 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + RI E+G VE+ T T + + P + +L GIT+ Sbjct: 16 VFVDLETTGGSTNEHRITEVGVVEV---GPTGVTRWSSLVDPQ-QPIPSFIQQLTGITNA 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 ++ P+F +I E + N ++AHNA FD GF+ E + Sbjct: 72 MVRGAPTFDAIAPELFARLNG--KLFVAHNASFDRGFLRGEFR 112 >gi|254884285|ref|ZP_05256995.1| DNA Pol III epsilon chain [Bacteroides sp. 4_3_47FAA] gi|254837078|gb|EET17387.1| DNA Pol III epsilon chain [Bacteroides sp. 4_3_47FAA] Length = 260 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 14/182 (7%) Query: 6 KMR------KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPE 58 KM+ + FD+ETTG + DRI+EI +++ + ++ +T + + P + Sbjct: 2 KMKLNLKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEETKTMR--INPEMH-IPEQ 58 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + +HGI D + D P+F + E + N L+ + Sbjct: 59 SSAIHGIYDADVADCPTFKEVAKEIARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDM 118 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + ID I + S ++ + H A D+ +V + Sbjct: 119 MKRKFIDVQVIYHK----LEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLKSQLDRY 174 Query: 179 SQ 180 + Sbjct: 175 PE 176 >gi|222151870|ref|YP_002561030.1| hypothetical protein MCCL_1627 [Macrococcus caseolyticus JCSC5402] gi|222120999|dbj|BAH18334.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 297 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 66/211 (31%), Gaps = 9/211 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D ET + I +G V+++D T TF + P N+ + +H I E Sbjct: 4 FIALDFET--ANHNAASICSVGMVKVIDNMMT-ETFYTLVNPETNFNT-SNINVHNIKPE 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+F +++ F + V + + L Sbjct: 60 DVTAAPTFETVYPHMLSFIGDLPVVCHFAQFDMKVLHASIKRYHFEMPTLPYFCSCIMAR 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 H S ++ + H AL D+ + + ++++ +N Sbjct: 120 DTVTNHSYSLKNMMTYYNLE-----FHGHHHALNDAKACAMITVRLLKNYESLNQYLTYK 174 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + + + + R + RIT + Sbjct: 175 RRKKYISSVSLKSKRAQMARYQTDLNRITPD 205 >gi|167570838|ref|ZP_02363712.1| possible DNA polymerase/helicase [Burkholderia oklahomensis C6786] Length = 408 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EIG V + + T+ + P + P +L GITD+ + Sbjct: 17 FVDLETTGGSAVEHRITEIGVVVVSADHVS--TWTTLVNP-RQAIPPFIQQLTGITDDMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P+F+ + S ++ + ++AHNA FD GF Sbjct: 74 RGAPTFADVASALFERLDG--KLFVAHNASFDRGF 106 >gi|167563688|ref|ZP_02356604.1| possible DNA polymerase/helicase [Burkholderia oklahomensis EO147] Length = 405 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EIG V + + T+ + P + P +L GITD+ + Sbjct: 17 FVDLETTGGSAVEHRITEIGVVVVSADHVS--TWTTLVNP-RQAIPPFIQQLTGITDDMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P+F+ + S ++ + ++AHNA FD GF Sbjct: 74 RGAPTFADVASALFERLDG--KLFVAHNASFDRGF 106 >gi|145221884|ref|YP_001132562.1| DNA polymerase III subunit epsilon [Mycobacterium gilvum PYR-GCK] gi|145214370|gb|ABP43774.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK] Length = 345 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 75/201 (37%), Gaps = 7/201 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RI+ + A+ L D ++ L P P +HG+T E L Sbjct: 34 VVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPG---VDPGPTHVHGLTAEML 90 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + +P+F + + + +AHN FD F++AE + + + + + Sbjct: 91 EGQPTFGDVVGDLCEVLRG--RTLVAHNVGFDYSFLSAEAELVGAELPIDTVMCTVELAR 148 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R L +L +G+T H AL D+ +L+ + ++V + + Sbjct: 149 RLDLGLENLRLETLAAHWGVTQMRP--HDALDDAMVLAQILKPVLVRAQERRKWLPVHPV 206 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 V + Sbjct: 207 GRRTWPNGRVTHDEFRPLKAL 227 >gi|303233442|ref|ZP_07320110.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Atopobium vaginae PB189-T1-4] gi|302480450|gb|EFL43542.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Atopobium vaginae PB189-T1-4] Length = 539 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 53/176 (30%), Gaps = 10/176 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL +D + +I AV+ T TF F+ P + KL I + Sbjct: 84 VFLDTETTGLSFADDSLTQIAAVKRRADG-TFDTFCTFVHPP-KPIPAHISKLTNIYNAD 141 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P F + Q ++ +D + Sbjct: 142 VAAAPKPKEAVLALAQFVGGAPIVAHNAAFDKTFVEGVLQHQTVSSTWIDSLALSKIAFP 201 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + H + C R H A D L+DV+ MM Q+ Sbjct: 202 SFNTHKLEDLAVLFGCARV--------THRADDDCKALADVWHYMMRALCQLPESL 249 >gi|270261613|ref|ZP_06189886.1| ribonuclease T [Serratia odorifera 4Rx13] gi|270045097|gb|EFA18188.1| ribonuclease T [Serratia odorifera 4Rx13] Length = 226 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIET G ++K D ++EI AV L + + + T + P G PEAL +G Sbjct: 31 VVIDIETAGFNAKTDALLEIAAVTLKMDEEGWLQQDETLHFHVEPFEGANLQPEALAFNG 90 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 91 IDPHNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFLMAAAERASLK 150 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C I H AL D+ + ++ +++ Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACIAADIPFDSTQAHSALYDTEQTAQLFCELVN 210 Query: 177 GGSQIN 182 ++ Sbjct: 211 RWKRLG 216 >gi|268320049|ref|YP_003293705.1| hypothetical protein FI9785_1583 [Lactobacillus johnsonii FI9785] gi|262398424|emb|CAX67438.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus johnsonii FI9785] Length = 320 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 5/170 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70 D+ETTGL DRI E+G + + TF + P+ K KL+GI + + Sbjct: 36 IDVETTGLSPYRDRITEMGGLRVRHGEVVA-TFSELVKFPDSNKVPAFITKLNGIDEATI 94 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++K + + F + + +N FD+ F+ ++ + L+ + Sbjct: 95 EEKGLPVQEAIKKYREFIGSDPI-VGYNVNFDLNFVYDLAEKYHLTVLNNDYVDVYRLAR 153 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 N L + + I+ +H L D V+ + Q Sbjct: 154 SFYPQEQHNRLLDC--MHRLDIAETQEHRGLDDCLDTKKVFDEFHRLFRQ 201 >gi|170754352|ref|YP_001780953.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum B1 str. Okra] gi|169119564|gb|ACA43400.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum B1 str. Okra] Length = 855 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 88/213 (41%), Gaps = 11/213 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+E+TG++ D I++I +++ + + +FQ FL P + Sbjct: 494 NVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIPKKSVGDSYLVH-GFSDQ 552 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ + + +F +F + + HN FD+ +N+EL+R++ + DTL Sbjct: 553 FLKENGENKKVVLKDFLEFIKD--TVIVGHNVTFDISILNSELERLSLEKASFKTYYDTL 610 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF---- 183 IARR +PS N + +S H A+ D DV + M+ + Sbjct: 611 DIARRFYPSLTNHKLETLSKL-FNTETKSSHDAMDDILATKDVLMAMLKEKVKPTIINRM 669 Query: 184 ---GFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 G + EE + +S +K K + Sbjct: 670 VVYGKYIKKFEPIYEEITNLKKLSYIKNPKDII 702 >gi|227889381|ref|ZP_04007186.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii ATCC 33200] gi|227850183|gb|EEJ60269.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii ATCC 33200] Length = 320 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 5/170 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70 D+ETTGL DRI E+G + + TF + P+ K KL+GI + + Sbjct: 36 IDVETTGLSPYRDRITEMGGLRVRHGEVVA-TFSELVKFPDSNKVPAFITKLNGIDEATI 94 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++K + + F + + +N FD+ F+ ++ + L+ + Sbjct: 95 EEKGLPVQEAIKKYREFIGSDPI-VGYNVNFDLNFVYDLAEKYHLTVLNNDYVDVYRLAR 153 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 N L + + I+ +H L D V+ + Q Sbjct: 154 SFYPQEQHNRLLDC--MHRLDIAETQEHRGLDDCLDTKKVFDEFHRLFRQ 201 >gi|168184157|ref|ZP_02618821.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf] gi|182672739|gb|EDT84700.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf] Length = 855 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 84/213 (39%), Gaps = 11/213 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+E+TG+++ D I++I +++ + +FQ FL P + Sbjct: 494 NVVVFDVESTGINTTEDEIVQIAGIKINSKGEAIESFQRFLNPKKSVGDSYLVHGFSDQF 553 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + ++ + HN FD+ +N+EL+R++ + DTL Sbjct: 554 LKENGENKKVVLKDFLK---FIKDTVIVGHNVTFDISILNSELERLSLEKASFKTYYDTL 610 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF---- 183 IARR +PS N + +S H A+ D D+ + M+ + Sbjct: 611 DIARRFYPSLTNHKLETLSKL-FNTETKSSHDAMDDILATKDILMVMLREKVKPTIINRM 669 Query: 184 ---GFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 G + + EE + +S +K K + Sbjct: 670 VVYGKYIKKFQPIYEEIANLKKLSYIKNPKDII 702 >gi|144900310|emb|CAM77174.1| DNA polymerase III, epsilon subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 459 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGLD+ D I+ +GAV + + P GR+ A +HGI + Sbjct: 258 VVLDTETTGLDAARDAIVSVGAVRCHGSRIYRAAMLDLLVNP-GRRIPARATAIHGIDES 316 Query: 69 FLKDKP 74 + KP Sbjct: 317 MVAGKP 322 >gi|325269040|ref|ZP_08135661.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella multiformis DSM 16608] gi|324988661|gb|EGC20623.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella multiformis DSM 16608] Length = 284 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 66/195 (33%), Gaps = 8/195 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+E TGLD NDRII+I ++ K R +F+ P G+ E +L GI+DE Sbjct: 10 VIFDLEATGLDLVNDRIIQISFIKAYPDGKEERE-NIFINP-GKPIPSEVTQLTGISDED 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P+F E D F+ + N FDV + E R D + Sbjct: 68 VAEAPTFKQKAKELADKFSGCDFAGFNSNR-FDVPMLAEEFLRAGVDFDFTKSRLIDAQN 126 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-----VGGSQINFG 184 K H A D+ V + + Sbjct: 127 IYHKMERRNLAAAYKFYCGRKMEEDFEAHRADQDTEATWRVLQGELDMYAPGRQEEPERV 186 Query: 185 FKTNEDRFFKEEKKT 199 + D + + Sbjct: 187 LNNDMDELAEFSRMN 201 >gi|310823691|ref|YP_003956049.1| exonuclease [Stigmatella aurantiaca DW4/3-1] gi|309396763|gb|ADO74222.1| Exonuclease [Stigmatella aurantiaca DW4/3-1] Length = 982 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 57/162 (35%), Gaps = 4/162 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + D+ETTGLD + D +IE+GA+ + R +++ R +L GI D Sbjct: 10 RHVFLDLETTGLDPRVDEVIELGALFFEHGREVRRIARMY--APSRPLPITIRRLTGIED 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L KP F S E + AHNA F+ GF+ L I LD ++ L Sbjct: 68 AMLAGKPRFGSDLDELREALTGWTVV--AHNAPFEKGFLPKLLGPIRAPVLDSCELLHYL 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 H + K + Sbjct: 126 HPELSSHSLEAMMRWAGLKPRSTHRVETDCEATYAVLSRALE 167 >gi|330961648|gb|EGH61908.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326] Length = 203 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 3/168 (1%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 3 RIAVIDFETTGISPNHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF + + ++ ++ Sbjct: 61 NNMIRTAPSAERVMGDVADFVGATPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 120 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L S + +HR+ A + ++L + + ++ Sbjct: 121 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 168 >gi|27468497|ref|NP_765134.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus epidermidis ATCC 12228] gi|57867358|ref|YP_189001.1| exonuclease [Staphylococcus epidermidis RP62A] gi|251809901|ref|ZP_04824374.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis BCM-HMP0060] gi|282874556|ref|ZP_06283441.1| exonuclease [Staphylococcus epidermidis SK135] gi|293367792|ref|ZP_06614441.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis M23864:W2(grey)] gi|27316044|gb|AAO05178.1|AE016749_124 DNA polymerase III, alpha chain PolC-type [Staphylococcus epidermidis ATCC 12228] gi|57638016|gb|AAW54804.1| exonuclease [Staphylococcus epidermidis RP62A] gi|251806566|gb|EES59223.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis BCM-HMP0060] gi|281296695|gb|EFA89204.1| exonuclease [Staphylococcus epidermidis SK135] gi|291318131|gb|EFE58528.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis M23864:W2(grey)] gi|329726906|gb|EGG63364.1| exonuclease [Staphylococcus epidermidis VCU144] gi|329734711|gb|EGG71017.1| exonuclease [Staphylococcus epidermidis VCU045] gi|329734804|gb|EGG71109.1| exonuclease [Staphylococcus epidermidis VCU028] Length = 184 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 9/178 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET +SK I +G V+++D T +F + P + + +HGI E Sbjct: 6 FVALDFET--ANSKRTSICSVGMVKVIDNQIT-ESFHTLVNPFD-YFTETNITVHGIHPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F ++ F +AHNA FD+ ++ L+ N D + Sbjct: 62 DVQDAPGFKHVYPYMLKFI--DQLPVVAHNAAFDMNVLHQSLKSHNIDTPSLTYFCSYQL 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 R + + H AL D+ + + +++ + Sbjct: 120 AKRTINAYRYGL---KHLMNHYHLDFHGHHDALNDAKACAMITYRLLKHYDDLQSMLS 174 >gi|329946892|ref|ZP_08294304.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328526703|gb|EGF53716.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 552 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 68/205 (33%), Gaps = 4/205 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + EIGAV+ F + P G + L GIT+ Sbjct: 22 FVVVDLETTGGAPGAQALTEIGAVKARGGQVLTDFF-TLVNP-GVAIPAQITMLTGITNA 79 Query: 69 FLKDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + P + F D+ + +AHNA+FDVG + + + +P + Sbjct: 80 MVAGAPGVRTCVEAFLDWADLLAGDVVLVAHNARFDVGHLRGAAAALGLEWPEPRVLDTL 139 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + S + + R H AL D+ DV + + + Sbjct: 140 ALARKAWTRSEVPNHKLGTLAAFVGSQTRPTHRALDDACATVDVLHAALEVMAPLGVTHL 199 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211 + S L D P Sbjct: 200 EDLATASDPVPVRRRAKSRLADDLP 224 >gi|119478307|ref|ZP_01618338.1| ribonuclease T [marine gamma proteobacterium HTCC2143] gi|119448647|gb|EAW29892.1| ribonuclease T [marine gamma proteobacterium HTCC2143] Length = 235 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 73/201 (36%), Gaps = 13/201 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D + D I+EI A + + D ++TF + P G P AL+ G Sbjct: 35 VVIDVETGGFDCQTDAILEIAASTLTMNDEGIICIDKTFSFNVAPFEGANLEPAALEFTG 94 Query: 65 ITDEFLKD-----KPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116 I + F+ + + + + HNA FD GF+ A ++R Sbjct: 95 IDPYHPFREADPEEVVFTDLLNAIRKQVKVHDCTRAVLVGHNAHFDHGFVMAAVERCQIK 154 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI+ ++ H A D+ ++++ ++ Sbjct: 155 RNPFHPFSVFDTATLAGLAFGQTVLAKACQTAGISFNNAEAHSAAYDTGKTAELFCLIVN 214 Query: 177 GGSQINFGFKTNEDRFFKEEK 197 + N+ Sbjct: 215 KWKDLGGWNIENDSMADMTND 235 >gi|83311148|ref|YP_421412.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] gi|82945989|dbj|BAE50853.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] Length = 216 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 75/194 (38%), Gaps = 22/194 (11%) Query: 8 RKIVFDIETTGLD-SKNDRI-------------IEIGAVEL---LDYSKTNRTFQVFLCP 50 R I D ETTG I IEIG VEL D KT ++ + P Sbjct: 13 RLIAIDAETTGFRVPTAAEIKKMPKGLRLPGVMIEIGCVELLRGEDGWKTGESWHRRIQP 72 Query: 51 NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA---KFDVGFIN 107 G + ++ +HGIT LKD P F + EF F + + + + Sbjct: 73 GG-PIAKASIAVHGITPAELKDAPQFRDVLDEFETFIGQDMLLAHSAENEIEFLNFEYAR 131 Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDSHL 166 + + + T ++R+ P L+ LC R I HGALLD+ L Sbjct: 132 VGRCGFDDVIFSDNDFVCTQELSRQFFPGVPGSLDVLCDRLWIDRSDRFEHHGALLDAIL 191 Query: 167 LSDVYIKMMVGGSQ 180 ++ ++KM G Q Sbjct: 192 TAEAFMKMAGGFVQ 205 >gi|304406144|ref|ZP_07387801.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus curdlanolyticus YK9] gi|304344728|gb|EFM10565.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus curdlanolyticus YK9] Length = 223 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 72/199 (36%), Gaps = 11/199 (5%) Query: 7 MR-KIVFDIETTGLDSKN--DRIIEIGAVELLDYS---KTNRTFQVFLCPNGRK-NSPEA 59 MR IV+D+E T L + IIEIGAV+L D FQ ++ P K + Sbjct: 1 MRTYIVYDLEFTVLRKQQYAADIIEIGAVKLTDGDQGPIEIDRFQTYVKPERNKVITTHT 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPL 118 + GIT E + P+F F + + + F+ + + L Sbjct: 61 TEFTGITQEQVDAAPTFPDAIDLFRQWIGDTTYYLCSWGPDDKQHFVRQCRDMKIELNWL 120 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + + + +S+ + + ++H AL D+ + ++++M Sbjct: 121 RNMNDLQLYYTKLQGNDASKRIGLARALETAGFVFDGAQHRALDDAANTARLFVRM---F 177 Query: 179 SQINFGFKTNEDRFFKEEK 197 QI D E K Sbjct: 178 DQITLEQNNAADDPLYETK 196 >gi|255068237|ref|ZP_05320092.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sicca ATCC 29256] gi|255047507|gb|EET42971.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sicca ATCC 29256] Length = 449 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 70/174 (40%), Gaps = 8/174 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+E+TG + DR+ EI + + ++ + P G+ ++L GIT+E + Sbjct: 2 VVDLESTGGNLYQDRVTEIAFLRFENGRV--EHYEQLINP-GKPIPEFVVQLTGITNEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P+F I + + +AHN++FD F+ + + + T+ ++ Sbjct: 59 AQAPAFDQIAPDILPLLRG--SLIVAHNSRFDYTFLR--HEFYRAGIDFAAPALCTVQLS 114 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 RR +P + I +H AL D L+D + + + Sbjct: 115 RRLYPQFYKHNLDSI-ISRMGIQTDDRHRALADVLALADYLEHSLKEKTSDEWD 167 >gi|168216491|ref|ZP_02642116.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens NCTC 8239] gi|182381517|gb|EDT78996.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens NCTC 8239] Length = 870 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 74/213 (34%), Gaps = 11/213 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IVFD+E+TG+D D II+I A++L + F+ FL K + Sbjct: 503 NIIVFDVESTGVDVIEDEIIQIAAIKLNKKGEVVDKFEKFLK---NKKPVKDSYYVHGFS 559 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + K + + + HN ++D+ + +EL+R N DTL Sbjct: 560 DEMLQKIGEDKEKVLKEFVEYSKGSIIVGHNVQYDINILCSELERSNLGKPKFKTFYDTL 619 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-------IKMMVGGSQ 180 I RR +P + N H+ H A+ D ++ I+ Sbjct: 620 DIYRRFYPGNINYKLENLSNV-YDTKHKPSHDAMDDIIATGELLVRAINEKIRETSMERM 678 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 ++ + IS KR L Sbjct: 679 ALMSKHLKAFTAISKKLNELFKISESKRPYELV 711 >gi|153939167|ref|YP_001390679.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum F str. Langeland] gi|152935063|gb|ABS40561.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum F str. Langeland] Length = 855 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 88/213 (41%), Gaps = 11/213 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+E+TG++ D I++I +++ + + +FQ FL P + Sbjct: 494 NVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIPKKSVGDSYLVH-GFSDQ 552 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ + + +F +F + + HN FD+ +N+EL+R++ + DTL Sbjct: 553 FLKENGENKKVVLKDFLEFIKD--TVIVGHNVTFDISILNSELERLSLEKASFKTYYDTL 610 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF---- 183 IARR +PS N + +S H A+ D DV + M+ + Sbjct: 611 DIARRFYPSLTNHKLETLSKL-FNTETKSSHDAMDDILATKDVLMAMLKEKVKPTIINRM 669 Query: 184 ---GFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 G + EE + +S +K K + Sbjct: 670 VVYGKYIKKFEPIYEEITNLKKLSYIKNPKDII 702 >gi|227524493|ref|ZP_03954542.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus hilgardii ATCC 8290] gi|227088363|gb|EEI23675.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus hilgardii ATCC 8290] Length = 945 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 7/172 (4%) Query: 9 KIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V DIETTG D D RII+ + T+ + P R+ ++L GIT Sbjct: 7 YAVVDIETTGTDMSVDNRIIQFSCTLVAHGKIV-ETYVSDINPQ-REVPERIIQLTGITP 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E LK P+F + S+ + + ++AHN FD F+N E QR+ LD I Sbjct: 65 ERLKKAPTFDQVSSKLYKLLSG--TVFVAHNVNFDFPFLNGEFQRVGYPELDIEAIDTVT 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 S L L + I +H H A D+ + + + ++ Sbjct: 123 LSQILLPTLSSYRLQDLSTYFNIIHNHP--HTADSDALATAKLLLILLRQVK 172 >gi|227513350|ref|ZP_03943399.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus buchneri ATCC 11577] gi|227083223|gb|EEI18535.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus buchneri ATCC 11577] Length = 945 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 7/172 (4%) Query: 9 KIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V DIETTG D D RII+ + T+ + P R+ ++L GIT Sbjct: 7 YAVVDIETTGTDMSVDNRIIQFSCTLVAHGKIV-ETYVSDINPQ-REVPERIIQLTGITP 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E LK P+F + S+ + + ++AHN FD F+N E QR+ LD I Sbjct: 65 ERLKKAPTFDQVSSKLYKLLSG--TVFVAHNVNFDFPFLNGEFQRVGYPELDIEAIDTVT 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 S L L + I +H H A D+ + + + ++ Sbjct: 123 LSQILLPTLSSYRLQDLSTYFNIIHNHP--HTADSDALATAKLLLILLRQVK 172 >gi|332290155|ref|YP_004421007.1| ribonuclease T [Gallibacterium anatis UMN179] gi|330433051|gb|AEC18110.1| ribonuclease T [Gallibacterium anatis UMN179] Length = 224 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 72/187 (38%), Gaps = 13/187 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLC-PNGRKNSPEALKLHG 64 ++ D+ET+GL+++ D ++E+ A V++ + + + G P +LK++G Sbjct: 33 VIVDVETSGLNAQTDGLLELAAITVKMDEQGLLHPDEKCHFQIKLFEGANVDPNSLKING 92 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + F + + + +AHNA FD F+ A + R Sbjct: 93 INPDDPQREAVDELTALTGFFQMVRRGQKAAECKRSILVAHNAMFDYNFLMAAINRTGIK 152 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L + C GI H AL D+ ++++ M+ Sbjct: 153 RNPFHPFSTFDTATLAGFMFGQTVLRTACDNAGIPFEPSKAHSALYDTEKTAELFCLMVN 212 Query: 177 GGSQINF 183 Q N Sbjct: 213 KLKQANI 219 >gi|300727261|ref|ZP_07060677.1| exonuclease [Prevotella bryantii B14] gi|299775499|gb|EFI72093.1| exonuclease [Prevotella bryantii B14] Length = 163 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 7/167 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET +++ + +G V + + +F + P + ++HG+ E Sbjct: 4 FVSIDFET--ANNERSSVCSVGIVIVRNGEIV-DSFYSLIQPEPNYYNYWCSQVHGLCHE 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 D P F ++++ +N +AHN FD G + A + D D Sbjct: 61 DTDDAPVFPKVWAQIEPLI--ENLPLVAHNKPFDEGCLKAVFRVYQMDYPDYEFYDTLCV 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + L ++ G H AL D+ + + +++ Sbjct: 119 SRRVLPDLENHQLQTVAAACG--YCLEDHHHALADAEACAWIAREIL 163 >gi|313632670|gb|EFR99647.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria seeligeri FSL N1-067] Length = 928 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 5/163 (3%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + R IV D+ETTG + + DRII+ A + + T+ FL P + +L Sbjct: 2 KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYATFLNPE-KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+ + +KD P F + + ++AHN FD F+ E+ R ++ Sbjct: 60 GISPKDVKDAPLFEDVAPIIAGLLED--TIFVAHNVSFDWTFLEREMTRAGISLGKMKKL 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 L L +G+ + + + Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFGLGHDKPHQADSDAEVTA 160 >gi|289435248|ref|YP_003465120.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171492|emb|CBH28036.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 928 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 5/163 (3%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + R IV D+ETTG + + DRII+ A + + T+ FL P + +L Sbjct: 2 KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYATFLNPE-KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+ + +KD P F + + ++AHN FD F+ E+ R ++ Sbjct: 60 GISPKDVKDAPLFEDVAPIIAGLLED--TIFVAHNVSFDWTFLEREMTRAGISLGKMKKL 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 L L +G+ + + + Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFGLGHDKPHQADSDAEVTA 160 >gi|255100360|ref|ZP_05329337.1| putative exonuclease [Clostridium difficile QCD-63q42] Length = 258 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 81/236 (34%), Gaps = 23/236 (9%) Query: 7 MRKIVFDIETTGLDSKND--------------RIIEIGAVELLDYSKTNRTFQVFLCPN- 51 M I+FD+E + D II+IGA++L TF ++ P Sbjct: 1 MEYIIFDLE---FNQGFDKKLNKTVSNEKCPFEIIQIGAIKLDSKFNIIDTFNSYVKPTI 57 Query: 52 GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAE 109 + P ++ I + D P+F +++ F F + Q+ A ++ Sbjct: 58 YKDIHPFISRMTNIKNSDFNDSPTFPEVYNNFIKFISSQDPILCVWGAGDLKELYRNINY 117 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + I + +P+ ++ S H AL D++ + Sbjct: 118 HKLPSNSLPKSYINIQQHASKYFNNPAGKSIGLQNAISILELDEKMSYHNALNDAYYTAK 177 Query: 170 VYIKMMVGGSQINFGFKTN--EDRFFKEEKKTVPNISLLKRDKPLFTR-ITKEELD 222 V+IK+ + T+ KK V L + + R +TK+E Sbjct: 178 VFIKIYNPSIVPDIYLYTSIKPKTIRYSNKKRVDYDKLFDEFRKILNRELTKDEKK 233 >gi|332829625|gb|EGK02271.1| hypothetical protein HMPREF9455_01541 [Dysgonomonas gadei ATCC BAA-286] Length = 256 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 68/199 (34%), Gaps = 8/199 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG D+ DRI+EI +++ + + +T L P P A +HGI+DE Sbjct: 10 VFFDLETTGTDTVKDRIVEISYLKVYPNGKQEVKT--KRLNPE-MPIPPGATAVHGISDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P+F I D + + L+ ++ID Sbjct: 67 DVKDCPTFKQIAKSLADQMEGCDLAGFNSSRFDIPLLAEEFLRAGVDIDFSKRKMIDVQI 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + ++ H A D+ +V + + + Sbjct: 127 IFHK----KEQRTLEAAYKFYCDKELTDAHSAEADTLATFEVLKAQLDKYPDLVNDMEKL 182 Query: 189 EDRFFKEEKKTVPNISLLK 207 + F ++K Sbjct: 183 AEEFSFFNNNVDLAGRIIK 201 >gi|304437456|ref|ZP_07397414.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369506|gb|EFM23173.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 219 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 71/222 (31%), Gaps = 23/222 (10%) Query: 7 MRKIVFDIETTGLDSKN-----------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M+ IV D+E ++ IIEIGAV L + FQ ++CP Sbjct: 1 MKHIVVDLE---MNPVGKEYRDVRRKLNGEIIEIGAVRLNEDFVQEDEFQCYVCPEYGMV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA---KFDVGFINAELQR 112 +L GIT E + P+F+ F F + E + + + K +L Sbjct: 58 KKHITELTGITQEKVAGHPAFADSFHAFVVWIGEAETKIYSWSMSDIKQLRKECRLKLPD 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + LD + R + L G H AL D+ S V Sbjct: 118 FDVTWLDARWVDLQQEFDDRLGLHNSLALKHALGAMGRRFEGSQ-HSALADAVNTSAVLA 176 Query: 173 KMMVGGS-----QINFGFKTNEDRFFKEEKKTVPNISLLKRD 209 M + D + P++ LKR+ Sbjct: 177 LMQDDAKFRETMRPVLEILEPSDGLSNSIGELFPDLEKLKRN 218 >gi|52424757|ref|YP_087894.1| ribonuclease T [Mannheimia succiniciproducens MBEL55E] gi|52306809|gb|AAU37309.1| DnaQ protein [Mannheimia succiniciproducens MBEL55E] Length = 223 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 70/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G ++K D ++E+ A+ L + ++ + P G +PE++K +G Sbjct: 30 VIIDVETAGFNAKTDALLELAAITLKMDENGLLVPDQKCHFHIKPFEGANINPESIKFNG 89 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + Q + +AHNA FD F+ A R Sbjct: 90 IDIDNPLRGAVPESEAITGLFQMVRKGQKNAGCQRSIIVAHNATFDQSFVMAAADRTKIK 149 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L C+ I + H AL D+ ++++ M+ Sbjct: 150 RNPFHPFSSFDTASLSGLMFGQTVLVKACQAAHIAFDGKQAHSALYDTERTAELFCYMVN 209 Query: 177 GGSQIN 182 + Sbjct: 210 HLKALG 215 >gi|326803711|ref|YP_004321529.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae ACS-120-V-Col10a] gi|326651377|gb|AEA01560.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae ACS-120-V-Col10a] Length = 890 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 3/95 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + V D+ETTG + DRII+IG V L K F+ + P L GI Sbjct: 4 KYAVVDLETTGTKYNRGDRIIQIGVVFLEGQKKIGE-FKSNIQP-LIPVPKNISDLTGIQ 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 E L+D P F I + + + N + Sbjct: 62 TEDLRDAPLFEDIAPDLFQQLQDCVFVAHNINFDY 96 >gi|301066539|ref|YP_003788562.1| Rad3-like DNA helicase [Lactobacillus casei str. Zhang] gi|300438946|gb|ADK18712.1| Rad3-related DNA helicase [Lactobacillus casei str. Zhang] Length = 931 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 7/101 (6%) Query: 6 KMR----KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 KM V D+ETTG K DR+I+ G + +T + P+ R Sbjct: 3 KMNAETIFAVVDLETTGTSVKDGDRMIQFGCALMQHGKII-QTISQLVNPD-RSVPVAIQ 60 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 +L G+ L P F I + N + Sbjct: 61 RLTGLDPNRLVAAPYFEEIAKTLHQLLTDTVFVAHNVNFDY 101 >gi|239631428|ref|ZP_04674459.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525893|gb|EEQ64894.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 931 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 7/101 (6%) Query: 6 KMR----KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 KM V D+ETTG K DR+I+ G + +T + P+ R Sbjct: 3 KMNAETIFAVVDLETTGTSVKDGDRMIQFGCALMQHGKII-QTISQLVNPD-RSVPVAIQ 60 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 +L G+ L P F I + N + Sbjct: 61 RLTGLDPNRLVAAPYFEEIAKTLHQLLTDTVFVAHNVNFDY 101 >gi|227535024|ref|ZP_03965073.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187339|gb|EEI67406.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 931 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 7/101 (6%) Query: 6 KMR----KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 KM V D+ETTG K DR+I+ G + +T + P+ R Sbjct: 3 KMNAETIFAVVDLETTGTSVKDGDRMIQFGCALMQHGKII-QTISQLVNPD-RSVPVAIQ 60 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 +L G+ L P F I + N + Sbjct: 61 RLTGLDPNRLVAAPYFEEIAKTLHQLLTDTVFVAHNVNFDY 101 >gi|217963949|ref|YP_002349627.1| DnaQ family exonuclease/DinG family helicase [Listeria monocytogenes HCC23] gi|217333219|gb|ACK39013.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria monocytogenes HCC23] gi|307571481|emb|CAR84660.1| ATP-dependent helicase [Listeria monocytogenes L99] Length = 928 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + R IV D+ETTG + + DRII+ A + + T+ FL P + +L Sbjct: 2 KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 GI+ + +K+ P F + + ++AHN FD F+ E+ Sbjct: 60 GISPKDVKNAPLFEDVAPIIAGLLED--TIFVAHNVSFDWTFLEREM 104 >gi|323527026|ref|YP_004229179.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001] gi|323384028|gb|ADX56119.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001] Length = 386 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 7/103 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + RI E+G VE+ T T + + P + +L GIT+ Sbjct: 16 VFVDLETTGGSTNEHRITEVGVVEV---GPTGVTRWSSLVDPQ-QPIPSFIQQLTGITNA 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 ++ P+F +I E + + ++AHNA FD GF+ E + Sbjct: 72 MVRGAPTFEAIAPELFARLDG--KLFVAHNASFDRGFLRGEFR 112 >gi|237802391|ref|ZP_04590852.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025248|gb|EGI05304.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6] Length = 237 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 67/200 (33%), Gaps = 6/200 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ET+GL+ D+++ IGAV + D + + F+ L + + + + Sbjct: 42 RWVVLDLETSGLNMSRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVLIHGLAP 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +P + F + + + + I + Sbjct: 102 SAIAAGSEP--VEALLDLMAFIGDSPVLGFHAPFDQHMLSRALKESLGYRLQHPFFDIAE 159 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + + L+ + +G+ +H A D+ + +++ + + + Sbjct: 160 LAPMLCEQANLRHAGLDDWTRFFGLQ--AEERHHASADALVTAELALILFSHARRKQIDS 217 Query: 186 KTNEDRFFKEEKKTVPNISL 205 D + ++ + S Sbjct: 218 PLLLDERLGQWRRRTQSHSF 237 >gi|299132474|ref|ZP_07025669.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2] gi|298592611|gb|EFI52811.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2] Length = 297 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 52/228 (22%), Gaps = 9/228 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL---DYSKTN--RTFQVFLCPNGRKNSPEALKLHGIT 66 D+ETTGLD D IIE+ V D + F P+ +S + Sbjct: 46 VDVETTGLDPDRDEIIELAMVPFRYALDGTVVEVLEPFDRLREPSKPISSEITVLTGITD 105 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 S + + + + + Sbjct: 106 AMVAGKSIDPSEVTMFAAPAAVVIAHNAAFDRRFLERFSPVFSTKPWACSMSEIDWAAEG 165 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 A+ + + R + A + K++ + Sbjct: 166 FEGAKLSYLAMALGFFYDRHRAANDCLAAIELLARELPRARAPALAKLLERARLPTWRIW 225 Query: 187 TNEDRFFKEEKKTVP----NISLLKRDKPLFTRITKEELDEHDKTIQT 230 F ++ N + + + ++ E + + Sbjct: 226 AENSPFEFKDLLKARGYRWNGEENGKPRSWYVDVSDAEKEAEISYLAR 273 >gi|77461145|ref|YP_350652.1| exonuclease [Pseudomonas fluorescens Pf0-1] gi|77385148|gb|ABA76661.1| putative exonuclease [Pseudomonas fluorescens Pf0-1] Length = 203 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 7/173 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V L + R +Q + G + +L GI+ Sbjct: 3 RIAVIDFETTGISPSSSCRATEIAVVMLENGRIVER-YQSLMN-AGVRIPAFIEQLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + L+ PS + +E +F +AHNA FD F + EL RI + L + Sbjct: 61 NAMLRTAPSAEKVMNEVNEFV--GCTPLLAHNAAFDQKFWDFELGRIKRTRL--QNFACS 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 L +ARR P++ N + H A+ D+ + +++ + + Sbjct: 117 LLLARRLMPAAPNHKLGTLTTFAQLPHTGQAHRAMADAEMAANLMVHLAGELR 169 >gi|330685586|gb|EGG97232.1| exonuclease [Staphylococcus epidermidis VCU121] Length = 184 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 59/173 (34%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V++++ T +F + PN S + + +HGI E Sbjct: 6 FVALDFET--ANGKRTSICSVGMVKVIENQIT-ESFHTLVNPND-YFSEQNISVHGIHPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+FS ++ F ++ +V + + + L Sbjct: 62 DVASSPNFSYVYPYMMQFIDQLPVVAHNAAFDMNVLHQSIQAIGLETPHLTYFCSYQLAK 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + H + + H AL D+ + + +++ + Sbjct: 122 RTVQSHRYGLKHMMDYYQL-----DFHGHHDALNDAKACAMITFRLLKHYDDL 169 >gi|282921701|ref|ZP_06329418.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9765] gi|282593963|gb|EFB98952.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9765] Length = 897 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D + ++AHN FD+ FI + N I Sbjct: 64 MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L+ L + +GIT + H A D+ + + I ++ Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175 >gi|260753544|ref|YP_003226437.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552907|gb|ACV75853.1| Exonuclease RNase T and DNA polymerase III [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 297 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 69/236 (29%), Gaps = 27/236 (11%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL---DYSK--TNRTFQVFLCPNGRKNSPEALKLHGI 65 V D+ETTGLD + D IIE+ D + +FQ P+ Sbjct: 45 VVDVETTGLDPQRDEIIELAMTPFNYGLDGTIFSVGDSFQGLRQPSKPIAPEITAITGIT 104 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + F + IAHNA FD F+ +R N Sbjct: 105 NEMVAGQ-----IVDPAAVASFAAPASLVIAHNAAFDRRFL----ERFNDVFSTKPWACS 155 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---------KMMV 176 I L L + G L + L +++ +++ Sbjct: 156 LSQIDWAAEGFEGTKLAYLAQAAGFFYDRHRAMHDCLATVELLAMWLPRSGATGLSRLLD 215 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVP----NISLLKRDKPLFTRITKEELDEHDKTI 228 G +++ F ++ N + + + + + + + + + Sbjct: 216 GARTVSWRIWAENAPFDLKDVLKARGYRWNGDPGPQPRAWYIDVPEAQCEAELRFL 271 >gi|156979774|ref|YP_001442033.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus Mu3] gi|156721909|dbj|BAF78326.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus Mu3] Length = 897 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D + ++AHN FD+ FI + N I Sbjct: 64 MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L+ L + +GIT + H A D+ + + I ++ Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175 >gi|322829565|gb|EFZ32905.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma cruzi] Length = 1404 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFDIE+TGL++ D IIEI A +F + P R E + +H ITD Sbjct: 761 RLVVFDIESTGLNTATDAIIEIAAW----DPVEATSFSSLVDPE-RAIPQETMAIHHITD 815 Query: 68 EFLKDKPSFSSIFSEFWDFFNE 89 ++ P + + Sbjct: 816 GMVRGAPRLPEVTRALARYLRL 837 >gi|21283074|ref|NP_646162.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus MW2] gi|49486295|ref|YP_043516.1| hypothetical protein SAS1398 [Staphylococcus aureus subsp. aureus MSSA476] gi|253732097|ref|ZP_04866262.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733298|ref|ZP_04867463.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus TCH130] gi|297207885|ref|ZP_06924318.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911970|ref|ZP_07129413.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus TCH70] gi|81827855|sp|Q6G9A7|DING_STAAS RecName: Full=Probable ATP-dependent helicase dinG homolog gi|81847815|sp|Q8NWP2|DING_STAAW RecName: Full=Probable ATP-dependent helicase dinG homolog gi|21204514|dbj|BAB95210.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus MW2] gi|49244738|emb|CAG43174.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253724144|gb|EES92873.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728838|gb|EES97567.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus TCH130] gi|296887459|gb|EFH26359.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886216|gb|EFK81418.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus TCH70] Length = 897 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D + ++AHN FD+ FI + N I Sbjct: 64 MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L+ L + +GIT + H A D+ + + I ++ Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175 >gi|71414478|ref|XP_809340.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL Brener] gi|70873706|gb|EAN87489.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma cruzi] Length = 1473 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFDIE+TGL++ D IIEI A +F + P R E + +H ITD Sbjct: 830 RLVVFDIESTGLNTATDAIIEIAAW----DPVEATSFSSLVDPE-RAIPQETMAIHHITD 884 Query: 68 EFLKDKPSFSSIFSEFWDFFNE 89 ++ P + + Sbjct: 885 GMVRGAPRLPEVTRALARYLRL 906 >gi|332520058|ref|ZP_08396522.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4] gi|332044617|gb|EGI80811.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4] Length = 1453 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 74/241 (30%), Gaps = 23/241 (9%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + D R I+I + + P G + Sbjct: 2 YLIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDAMGNCIESEDYLVKPEGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI---------NAE 109 A K+HGI+ E +++ E ++ + + N KFD+ + + Sbjct: 62 AEKIHGISTELAQEQGVELIEVLEKFNIALNKTKFVVGQNVKFDLNIMGAEFVREDIANQ 121 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 LQ + I + + + +Y H A D + Sbjct: 122 LQELPVLDTCTEHTASLCQIPGGRGGRFKLPTLTELHQYLFNQPFAEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 +++++ D F + I L+ K+E + + +Q Sbjct: 182 CFLELIRRQQYTKEQLDVQPDYFENFSEANPQPIQLIGLKHINL----KKESAKINARLQ 237 Query: 230 T 230 Sbjct: 238 K 238 >gi|323442219|gb|EGA99850.1| ATP-dependent DNA helicase [Staphylococcus aureus O46] Length = 897 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D + ++AHN FD+ FI + N I Sbjct: 64 MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L+ L + +GIT + H A D+ + + I ++ Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175 >gi|312829847|emb|CBX34689.1| dnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus ECT-R 2] Length = 897 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D + ++AHN FD+ FI + N I Sbjct: 64 MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L+ L + +GIT + H A D+ + + I ++ Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175 >gi|302333066|gb|ADL23259.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus JKD6159] Length = 897 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D + ++AHN FD+ FI + N I Sbjct: 64 MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L+ L + +GIT + H A D+ + + I ++ Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175 >gi|283770528|ref|ZP_06343420.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus H19] gi|283460675|gb|EFC07765.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus H19] Length = 897 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D + ++AHN FD+ FI + N I Sbjct: 64 MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L+ L + +GIT + H A D+ + + I ++ Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175 >gi|282916722|ref|ZP_06324480.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus D139] gi|282319209|gb|EFB49561.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus D139] gi|298694746|gb|ADI97968.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus ED133] gi|323439542|gb|EGA97263.1| ATP-dependent DNA helicase [Staphylococcus aureus O11] Length = 897 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D + ++AHN FD+ FI + N I Sbjct: 64 MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L+ L + +GIT + H A D+ + + I ++ Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175 >gi|221140978|ref|ZP_03565471.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302751286|gb|ADL65463.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 897 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D + ++AHN FD+ FI + N I Sbjct: 64 MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L+ L + +GIT + H A D+ + + I ++ Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175 >gi|62184729|ref|YP_219514.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3] gi|62147796|emb|CAH63542.1| putative DNA polymerase III epsilon chain [Chlamydophila abortus S26/3] Length = 249 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D E TGLD K DRIIE A+ S + + + P+ R S E+ ++H I+D Sbjct: 9 FVCLDCEMTGLDVKKDRIIEFAAIRFTFDSVI-DSMETLINPD-RVISAESQRIHHISDA 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97 LKD+P + +F + F E + Sbjct: 67 MLKDQPRIAEVFPKIKSFLKEGDYIVGHS 95 >gi|15924445|ref|NP_371979.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|15927036|ref|NP_374569.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus N315] gi|57650410|ref|YP_186339.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus COL] gi|87161026|ref|YP_494043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195189|ref|YP_499990.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267941|ref|YP_001246884.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus JH9] gi|150394004|ref|YP_001316679.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus JH1] gi|151221578|ref|YP_001332400.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|161509623|ref|YP_001575282.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253315964|ref|ZP_04839177.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006242|ref|ZP_05144843.2| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795489|ref|ZP_05644468.1| DnaQ family protein [Staphylococcus aureus A9781] gi|258413298|ref|ZP_05681574.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9763] gi|258420595|ref|ZP_05683537.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9719] gi|258426791|ref|ZP_05688011.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9299] gi|258444789|ref|ZP_05693118.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8115] gi|258447377|ref|ZP_05695521.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A6300] gi|258449738|ref|ZP_05697839.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A6224] gi|258451113|ref|ZP_05699148.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A5948] gi|258454593|ref|ZP_05702557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A5937] gi|269203080|ref|YP_003282349.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp. aureus ED98] gi|282892951|ref|ZP_06301186.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8117] gi|282927982|ref|ZP_06335591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A10102] gi|284024454|ref|ZP_06378852.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp. aureus 132] gi|294848419|ref|ZP_06789165.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9754] gi|295407205|ref|ZP_06817005.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8819] gi|296275347|ref|ZP_06857854.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp. aureus MR1] gi|297244629|ref|ZP_06928512.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8796] gi|304380963|ref|ZP_07363621.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81832505|sp|Q7A5K4|DING_STAAN RecName: Full=Probable ATP-dependent helicase dinG homolog gi|81855933|sp|Q99U34|DING_STAAM RecName: Full=Probable ATP-dependent helicase dinG homolog gi|81859586|sp|Q5HFW8|DING_STAAC RecName: Full=Probable ATP-dependent helicase dinG homolog gi|122539544|sp|Q2FYH5|DING_STAA8 RecName: Full=Probable ATP-dependent helicase dinG homolog gi|123485907|sp|Q2FGY5|DING_STAA3 RecName: Full=Probable ATP-dependent helicase dinG homolog gi|13701253|dbj|BAB42548.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus N315] gi|14247226|dbj|BAB57617.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|57284596|gb|AAW36690.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus COL] gi|87127000|gb|ABD21514.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202747|gb|ABD30557.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741010|gb|ABQ49308.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus aureus subsp. aureus JH9] gi|149946456|gb|ABR52392.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus aureus subsp. aureus JH1] gi|150374378|dbj|BAF67638.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|160368432|gb|ABX29403.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257789461|gb|EEV27801.1| DnaQ family protein [Staphylococcus aureus A9781] gi|257839862|gb|EEV64330.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9763] gi|257843543|gb|EEV67950.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9719] gi|257849952|gb|EEV73910.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9299] gi|257850282|gb|EEV74235.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8115] gi|257853568|gb|EEV76527.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A6300] gi|257856986|gb|EEV79886.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A6224] gi|257861168|gb|EEV83981.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A5948] gi|257862976|gb|EEV85740.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A5937] gi|262075370|gb|ACY11343.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp. aureus ED98] gi|269940948|emb|CBI49332.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282590279|gb|EFB95359.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A10102] gi|282764948|gb|EFC05073.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8117] gi|285817135|gb|ADC37622.1| DinG family ATP-dependent helicase YoaA [Staphylococcus aureus 04-02981] gi|294824445|gb|EFG40868.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9754] gi|294967918|gb|EFG43947.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8819] gi|297178659|gb|EFH37905.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8796] gi|304340488|gb|EFM06424.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315129170|gb|EFT85165.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus CGS03] gi|315197799|gb|EFU28133.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus CGS01] gi|320140373|gb|EFW32229.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus MRSA131] gi|320142700|gb|EFW34503.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314132|gb|AEB88545.1| Probable ATP-dependent helicase dinG -like protein [Staphylococcus aureus subsp. aureus T0131] gi|329723190|gb|EGG59721.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus subsp. aureus 21189] gi|329727432|gb|EGG63888.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus subsp. aureus 21172] Length = 897 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D + ++AHN FD+ FI + N I Sbjct: 64 MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L+ L + +GIT + H A D+ + + I ++ Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175 >gi|293374981|ref|ZP_06621276.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909] gi|325843349|ref|ZP_08167932.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1] gi|292646391|gb|EFF64406.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909] gi|325489378|gb|EGC91751.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1] Length = 306 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 76/227 (33%), Gaps = 13/227 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + K D IG + + + + + PN + +P + +HGI Sbjct: 1 MNFIAIDFET--ANEKRDSACSIGLTVVKNNQIIEQKYY-LIKPNELRFAPINISIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +K+ +F ++ E +F N +AHNA FD+ + L + + Sbjct: 58 ASDVKNAKTFDQLWPELLPYF--TNNIIMAHNAAFDLSVLRHTLDAYHIPYPNCRYGCTM 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL--------LSDVYIKMMVGG 178 + LN++ G+ +H L ++ + Sbjct: 116 ILSRNFFPHLENAKLNTVNHHLGLEFNHHHASADAHACANIVLKMQEELQCADLEELCQM 175 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 + + G + ++ K PL +K ++ +H Sbjct: 176 AGLKLGTLHDAGYIPAKKLKKTVTSKRNFTPSPLPFISSKSDVFKHK 222 >gi|254448582|ref|ZP_05062041.1| ribonuclease T [gamma proteobacterium HTCC5015] gi|198261771|gb|EDY86057.1| ribonuclease T [gamma proteobacterium HTCC5015] Length = 212 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 67/183 (36%), Gaps = 13/183 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIET G +++ D ++EI AV + + T + P G P++L++ G Sbjct: 17 VVIDIETGGFNAQTDAVLEIAAVMIDMDHQGRLRVGETISTHVEPFQGANIEPKSLEITG 76 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + A + HN+ FD+ F+NA + R Sbjct: 77 IDLNNPLRGAVSEREALDKLLKPIRSAVKNHGCTRAILVGHNSFFDLNFLNAAIDRCTYK 136 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ + L C+ G+ ++ H A+ D+ + ++ K++ Sbjct: 137 RNPFHAFSSFDTVTIAGLAYGQTVLARACEAAGLGWNNSEAHSAVYDAEQTARLFCKVIN 196 Query: 177 GGS 179 Sbjct: 197 QWD 199 >gi|228471317|ref|ZP_04056120.1| exonuclease [Porphyromonas uenonis 60-3] gi|228306894|gb|EEK16002.1| exonuclease [Porphyromonas uenonis 60-3] Length = 255 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 8/171 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FDIE TGLD NDRIIE+ ++L+ D + RT P E+ +HGITD+ Sbjct: 10 VFFDIEATGLDITNDRIIELTILKLMPDGERIVRT--RRFNPE-MPIPAESTAIHGITDD 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F + + + + L+ + L + ID + Sbjct: 67 DVRDCPPFRACAKSLAELIDGCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLAMQHIDVQT 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I + P R+ H HGA D+ DV + + Sbjct: 127 IFHKMEP----RTLEGAVRFYCHREHIGAHGAEADTIATLDVLMAQLDKYG 173 >gi|188528322|ref|YP_001911009.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470] gi|188144562|gb|ACD48979.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470] gi|308064307|gb|ADO06194.1| DNA polymerase III subunit epsilon [Helicobacter pylori Sat464] Length = 287 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYITELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 132 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177 >gi|326791308|ref|YP_004309129.1| exonuclease RNase T and DNA polymerase III [Clostridium lentocellum DSM 5427] gi|326542072|gb|ADZ83931.1| Exonuclease RNase T and DNA polymerase III [Clostridium lentocellum DSM 5427] Length = 248 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 83/234 (35%), Gaps = 20/234 (8%) Query: 7 MRKIVFDIETTGLD----SKND----------RIIEIGAVELLDYSKTNRTFQVFLCPN- 51 M IVFD+E + ++ D II+IGAV+L + T TF + P Sbjct: 1 MNYIVFDLE---FNQDFSARKDVVNKENPYTFEIIQIGAVKLDENFHTIDTFNRLIKPTI 57 Query: 52 GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAE 109 + +P L GIT E L + SFS ++ + +F + A + Sbjct: 58 YEEMNPFVSYLTGITIEQLAQEESFSEVYKAYIEFIGSRKAICCIWGTSDMKILFKNILY 117 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + I + PS + + + H AL D++ ++ Sbjct: 118 HKLDPAPFPRMFINIQPYTSIYLGLPSKKLLRLQDAVNMLQIPTSTAFHLALSDAYYTAE 177 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 ++ K+ N + + KK + +L+K+ ++ R EE Sbjct: 178 IFKKVYQPSITPNCYDPYEASKLSRPAKKHIDFDALIKQFVKMYHRPMTEEEQA 231 >gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM 43183] gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM 43183] Length = 328 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 5/148 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+GL R++ + + L F L P P + +HG+T E L Sbjct: 18 VVDVETSGLRPDRHRVLSLAVLTLRPDGHLVEEFSTLLDPG---CDPGPVHIHGLTPERL 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P+F + + + +AHNA FD F+ E R R+ Sbjct: 75 RGAPTFDRVAERVAELLSG--RVMVAHNAAFDYAFLAHEFGRAGLHLPVEQRLCTLALGR 132 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKH 158 R P+ L++L YG+ Sbjct: 133 RIGLPTPDLRLSTLAAHYGVPQHRAHDA 160 >gi|237654661|ref|YP_002890975.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|237625908|gb|ACR02598.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 482 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 7/163 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R D+E+TG DRI EI + + D R ++ + P G+ P ++ GI+D Sbjct: 6 RLAFIDVESTGAHPVRDRITEIAILRVEDGEVVAR-WESLVAP-GQPIPPLIEEVTGISD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P+F + ++AH+A+FD GFI RI ++ P L Sbjct: 64 AMVAEAPAFEVLADTVAALLEG--CVFVAHSARFDYGFIRNAFTRIGREFEAPVLCTVKL 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 S A R+ L++L +R+G+ ++H A+ D +L Sbjct: 122 SRA-LYPEHHRHGLDALIERHGLVC--AARHRAMGDVEVLWQF 161 >gi|187478996|ref|YP_787020.1| exonuclease [Bordetella avium 197N] gi|115423582|emb|CAJ50118.1| putative exonuclease [Bordetella avium 197N] Length = 193 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 2/116 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGL + I+E AV + + + + NGR S A E Sbjct: 28 FVVADLETTGLSAHACEILEFAAVRVDTEGQIASEYSQLVRINGRVPSFIARLTGISQQE 87 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ++D F F DF A HNA FD F+ A R + + + Sbjct: 88 VIRDGKPIDEAFRAFCDFVGT--APVFFHNASFDTRFLRATASRCGQAFDNDTHCT 141 >gi|268611881|ref|ZP_06145608.1| hypothetical protein RflaF_20541 [Ruminococcus flavefaciens FD-1] Length = 176 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 9/170 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ET + NDR+ IG + D F + P +L GI E Sbjct: 4 YIVFDVET--PNHANDRMSAIGITAVKDNKIVANYF-SLVDPETH-FDSFNTQLTGIDAE 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P+F + + + +AHNA FD+ + + L+ + + T+ Sbjct: 60 KVKDAPNF-AELWKKIEPIMS-KGILVAHNAVFDMSVLRSCLRSYGITWKPTAEYLCTVQ 117 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 I RR P+ +++LN +C YG H A D+H +++ ++ M G Sbjct: 118 IGRRVLPNMKHNLNVMCDHYG---IALDHHQADSDAHACAEILLRYMESG 164 >gi|156743855|ref|YP_001433984.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM 13941] gi|156235183|gb|ABU59966.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM 13941] Length = 232 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 2/67 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDE 68 V D+ETTGL+ + D ++ IG VE+ + +R + + P+ +PE++++HG+ + Sbjct: 37 VMDVETTGLNPRRDALLAIGLVEIDEGRIRMDRRWYTLVHPPDDAPINPESIRIHGLLPQ 96 Query: 69 FLKDKPS 75 ++ P Sbjct: 97 DVEHAPP 103 >gi|28899929|ref|NP_799584.1| putative DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD 2210633] gi|260363223|ref|ZP_05776092.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] gi|260880510|ref|ZP_05892865.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|260898537|ref|ZP_05907033.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|28808212|dbj|BAC61417.1| putative DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD 2210633] gi|308085005|gb|EFO34700.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|308092696|gb|EFO42391.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|308112379|gb|EFO49919.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] Length = 236 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 48/167 (28%), Gaps = 4/167 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTG+D++ D+I+ IG V+L LD + + ++C A Sbjct: 52 FVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYICHGQFIKPETAKINGLTPQ 111 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + K P + + + + +D + Sbjct: 112 DLAKGLP-LDEGMNRLLKRITGKVVLAHGCCIEKAFIHAYFSSRYQVEDFPAYFIDTLQI 170 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYI 172 S + H A D+ +++++ Sbjct: 171 EKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAELFL 217 >gi|24374295|ref|NP_718338.1| ribonuclease T [Shewanella oneidensis MR-1] gi|54036332|sp|Q8EDJ2|RNT_SHEON RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|24348836|gb|AAN55782.1|AE015715_1 ribonuclease T [Shewanella oneidensis MR-1] Length = 222 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 74/203 (36%), Gaps = 15/203 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S+ D ++EI +++ D ++T + P G PEAL +G Sbjct: 20 VVIDVETAGFNSQTDALLEIAVTLLKMDDEGLLGIDKTLHFHIEPFEGANLEPEALAFNG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + +AHNA FD GF++ ++R + Sbjct: 80 IDPTNPLRGAVSEKDAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L C GI ++ H AL D+ ++++ ++ Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCYIVN 199 Query: 177 GGSQINFG--FKTNEDRFFKEEK 197 + T+E E+ Sbjct: 200 RWKTLGGWPLLATSESEDMDSEE 222 >gi|325286963|ref|YP_004262753.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489] gi|324322417|gb|ADY29882.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489] Length = 221 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALK 61 +V D ETTG + DR++ IGA++L + +F+VF+ + + Sbjct: 36 FVVLDTETTGFSYQEDRMLCIGALKLKNNDINIGDSFEVFIHQDHYNQETAEIH 89 >gi|321309654|ref|YP_004191983.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str. Langford 1] gi|319801498|emb|CBY92144.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma haemofelis str. Langford 1] Length = 1393 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 53/192 (27%), Gaps = 9/192 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFDIETTGL+ D I EI + + + T+ + + Sbjct: 351 YCVFDIETTGLNPLFDEITEIAIYKYSNKRRIA-TYHSYFK---ISEPLKQHIKDLTHIT 406 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI----I 124 + + + + + + F + I S + Sbjct: 407 DELLAEKGQDLEVVLKEVKDFTQGSVLVAHNGIEFDFPFLNAKYIKLGMEPLSNPLIDTL 466 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV-GGSQINF 183 + + L ++CKR G+ H A D +L V++ + + Sbjct: 467 RLSQTIFSEEKYKSHSLGAICKRVGVEYDLEHAHSADFDVDVLWQVFMYSLEPKLKEWGV 526 Query: 184 GFKTNEDRFFKE 195 + Sbjct: 527 NLEDGLKEANDA 538 >gi|254974887|ref|ZP_05271359.1| putative exonuclease [Clostridium difficile QCD-66c26] gi|255092274|ref|ZP_05321752.1| putative exonuclease [Clostridium difficile CIP 107932] gi|255314014|ref|ZP_05355597.1| putative exonuclease [Clostridium difficile QCD-76w55] gi|255516694|ref|ZP_05384370.1| putative exonuclease [Clostridium difficile QCD-97b34] gi|255649792|ref|ZP_05396694.1| putative exonuclease [Clostridium difficile QCD-37x79] gi|306519894|ref|ZP_07406241.1| putative exonuclease [Clostridium difficile QCD-32g58] Length = 258 Score = 57.3 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 80/236 (33%), Gaps = 23/236 (9%) Query: 7 MRKIVFDIETTGLDSKND--------------RIIEIGAVELLDYSKTNRTFQVFLCPN- 51 M I+FD+E + D II+IGA++L TF ++ P Sbjct: 1 MEYIIFDLE---FNQGFDKKLNKTVSNEKCPFEIIQIGAIKLDSKFNIIDTFNSYVKPTI 57 Query: 52 GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAE 109 + P ++ I + D P+F +++ F F + Q+ ++ Sbjct: 58 YKDIHPFISRMTNIKNSDFNDSPTFPEVYNNFIKFISSQDPILCVWGVGDLKELYRNINY 117 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + I + +P+ ++ S H AL D++ + Sbjct: 118 HKLPSSSLPKSYINIQQHASKYFNNPAGKSIGLQNAISILELDEKMSYHNALNDAYYTAK 177 Query: 170 VYIKMMVGGSQINFGFKTN--EDRFFKEEKKTVPNISLLKRDKPLFTR-ITKEELD 222 V+IK+ + T+ KK V L + + R +TK+E Sbjct: 178 VFIKIYNPSIVPDIYLYTSIKPKTIRYSNKKRVDYDKLFDEFRKILNRELTKDEKK 233 >gi|255534253|ref|YP_003094624.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium 3519-10] gi|255340449|gb|ACU06562.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium 3519-10] Length = 407 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 80/224 (35%), Gaps = 8/224 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIE+ G + + IIEI + + ++ F + P KL I+ + + Sbjct: 4 VIDIESNGAGFRKESIIEIAVYKYDGHEIVDQ-FISLVNPESEITP-FVQKLTKISPKMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K P F I + +N + HN FD + E +R+ D + L+ Sbjct: 62 KTAPKFPEIARRVIE--ITRNTILVGHNIDFDYRMLRQEFKRLGYDFTINTLDTIPLAKK 119 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 + L L K GI +H A D+ D++ +++ + +E+ Sbjct: 120 LIPE-AESYSLGKLVKSLGIP--LVDQHRASGDARATLDLFKLLLIKDKNSEIIQQHHEE 176 Query: 191 RFFKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTLGK 233 K V N++ L + + E + + L K Sbjct: 177 SNGKTYLNKVRNLTQDLPAARGIIYMQNAEGKIIYFDFVDDLSK 220 >gi|256381025|ref|YP_003104685.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM 43827] gi|255925328|gb|ACU40839.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM 43827] Length = 382 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 6/71 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M V D+ETTG ++DR++E+ V+L D T + L P +H I Sbjct: 1 MGYAVVDVETTGFR-RSDRVVEVAVVQLDRDRRVTGE-WCTLLNPGRDLGP---QHVHRI 55 Query: 66 TDEFLKDKPSF 76 + P+F Sbjct: 56 RAADVWGAPTF 66 >gi|300779647|ref|ZP_07089503.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] gi|300533757|gb|EFK54816.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] Length = 238 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG+ ND I+EIG V L T++ + P+ + + + + Sbjct: 20 YAVIDFETTGMR-DNDAIVEIGVVLLDKDLSVEDTWEALVNPHRLILNTDVHGIEEDDVD 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P+ + F +AH+A ++ ++ E +R D P IDT+ Sbjct: 79 RGLTFPALAGYFKHL-----LHGRTLVAHDATYEKRYLRYEFERWGMDDTVPDTWIDTMQ 133 Query: 129 IARRK 133 ++ R Sbjct: 134 LSSRY 138 >gi|255029619|ref|ZP_05301570.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes LO28] Length = 132 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + R IV D+ETTG + + DRII+ A + + T+ FL P + +L Sbjct: 2 KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL-ETYTTFLNPE-KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 GI+ + +K+ P F + + + ++AHN FD F+ E+ Sbjct: 60 GISPKDVKNAPLFEDVAPIIANLLED--TIFVAHNVSFDWTFLEREM 104 >gi|42519676|ref|NP_965606.1| hypothetical protein LJ0649 [Lactobacillus johnsonii NCC 533] gi|41583965|gb|AAS09572.1| hypothetical protein LJ_0649 [Lactobacillus johnsonii NCC 533] Length = 320 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 5/170 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70 D+ETTGL DRI E+G +++ TF + P+ K KL+GI + + Sbjct: 36 IDVETTGLSPYRDRITEMGGLKVRHGEVVA-TFSELVKFPDSNKVPAFITKLNGIDETTI 94 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++K + + F + + +N FD+ F+ ++ + L+ + Sbjct: 95 EEKGLPVQEAIKKYREFIGSDPI-VGYNVNFDLNFVYDLAEKYHLTVLNNDYVDVYRLAR 153 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 N L + + I+ +H L D V+ + Q Sbjct: 154 SFYPQEQHNRLLDC--MHRLDIAETQEHRGLDDCLDTKKVFDEFHKLFKQ 201 >gi|306833904|ref|ZP_07467028.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis ATCC 700338] gi|304423905|gb|EFM27047.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis ATCC 700338] Length = 827 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 8/181 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ N + + D+E TG + II++G V + + +T+Q + P+ S + Sbjct: 1 MMQVNSQKYAIVDLEATGAHAM-AEIIQVGIVIIENDEIV-KTYQTDVNPHEA-LSEHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITDE L P FS + E ++ + ++AHN KFD + Q + Sbjct: 58 NLTGITDEQLAKAPDFSQVAQEIFNLIED--CVFVAHNVKFDANLLA--EQLFMEGYELR 113 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +DT+ +A+ +P+ + + H A+ D++ + +++K+ Sbjct: 114 TPRVDTVELAQVFYPTFEKYSLGNLADV-LALDLADAHTAISDAYATAQLFLKLKAKMKS 172 Query: 181 I 181 + Sbjct: 173 L 173 >gi|227328518|ref|ZP_03832542.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 223 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 72/199 (36%), Gaps = 13/199 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++E+ AV L + K + T + P G P AL +G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLKPDETLHFHVEPFEGAILEPAALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 80 IDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAAERCSLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D++ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCELVN 199 Query: 177 GGSQINFGFKTNEDRFFKE 195 ++ E+ ++ Sbjct: 200 RWKRLGGWPIALEENSLED 218 >gi|86130781|ref|ZP_01049380.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134] gi|85818192|gb|EAQ39352.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134] Length = 1463 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 67/229 (29%), Gaps = 19/229 (8%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + R I+I + + + P+G + Sbjct: 2 YLIFDTETTGLPKNWNAPITDSDNWPRCIQIAWQLHDEMGQVIEHQDYLVKPDGFDIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A ++HGI+ + S E ++ Q + N FD + AE R+N Sbjct: 62 AERIHGISTALAEKDGVALSEVLENFNIALSQAKYVVGQNVGFDTNIMGAEFHRLNIGND 121 Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + ++ H A D + Sbjct: 122 LQELPVLDTCTEKTATLCQLPGGRGGKFKLPTLTELHKHLFGEGFGEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 +++++ D F + + I + + ++ Sbjct: 182 CFLELIRQRVYTKEELDVQPDYFDRFSQANPQPIEFIGLKHINLKKASE 230 >gi|262274601|ref|ZP_06052412.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] gi|262221164|gb|EEY72478.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] Length = 245 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D+ETTGLD + II IG V LD + P R E++ HGIT Sbjct: 55 FVALDLETTGLDPSQNDIISIGLVPFTLDRIYCRDAKHWIVKP-RRPLEAESVVFHGITH 113 Query: 68 EFLKDKP 74 + D P Sbjct: 114 SDVSDAP 120 >gi|271500216|ref|YP_003333241.1| ribonuclease T [Dickeya dadantii Ech586] gi|270343771|gb|ACZ76536.1| ribonuclease T [Dickeya dadantii Ech586] Length = 226 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L + + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDDTLHFHIEPFEGAILRPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + N A +AHNA FD F+ A +R Sbjct: 80 IDPSNPLRGAVSEYDALHDIFKAVRKGIKDQNCNRAIIVAHNATFDHSFLMAAAERCGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C I H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACIAAEIPFDASQAHSALYDTERTAQLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRMG 205 >gi|153008625|ref|YP_001369840.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC 49188] gi|151560513|gb|ABS14011.1| Exonuclease RNase T and DNA polymerase III [Ochrobactrum anthropi ATCC 49188] Length = 332 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF 47 +V D ETTGL+ + IIEIGAV D F Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATF 113 >gi|330888790|gb|EGH21451.1| exonuclease [Pseudomonas syringae pv. mori str. 301020] gi|330987665|gb|EGH85768.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011360|gb|EGH91416.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 203 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 3/168 (1%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 3 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF + + ++ ++ Sbjct: 61 NNMIRTAPSAERVMGDVADFVGATPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 120 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L S + +HR+ A + ++L + + ++ Sbjct: 121 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 168 >gi|330870427|gb|EGH05136.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 203 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 3/168 (1%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 3 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF + + ++ ++ Sbjct: 61 NNMIRTAPSAERVMGDVADFVGATPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 120 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L S + +HR+ A + ++L + + ++ Sbjct: 121 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 168 >gi|330812208|ref|YP_004356670.1| DNA polymerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380316|gb|AEA71666.1| putative DNA polymerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 235 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 63/177 (35%), Gaps = 4/177 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D+ETTGL+ D+++ IGAV + D + ++ F+ L + +K P L Sbjct: 40 RWVVLDLETTGLNLNKDQVLSIGAVVIEDGAIDFSQQFERTLQCDKQKLGPSVLIHGLAP 99 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ + ++ +A +A FD + L+ L S + Sbjct: 100 SAIAAGSDPAEALLAFME---FVGDSPLLAFHAPFDSHMLGRALKDYLGYRLQHSFLDVA 156 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++ + +H A D+ +++ + + Q Sbjct: 157 DLAPMLCPQANLRKSGLDEWIDWFKLQVFDRHNASADALATAELALILFSRARQQQI 213 >gi|289649837|ref|ZP_06481180.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250] Length = 204 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 3/168 (1%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 4 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF + + ++ ++ Sbjct: 62 NNMIRTAPSAERVMGDVADFVGATPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L S + +HR+ A + ++L + + ++ Sbjct: 122 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 169 >gi|289627588|ref|ZP_06460542.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 204 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 3/168 (1%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 4 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF + + ++ ++ Sbjct: 62 NNMIRTAPSAERVMGDVADFVGATPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L S + +HR+ A + ++L + + ++ Sbjct: 122 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 169 >gi|257482174|ref|ZP_05636215.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298488861|ref|ZP_07006886.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156614|gb|EFH97709.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 204 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 3/168 (1%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 4 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF + + ++ ++ Sbjct: 62 NNMIRTAPSAERVMGDVADFVGATPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L S + +HR+ A + ++L + + ++ Sbjct: 122 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 169 >gi|258422513|ref|ZP_05685421.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9635] gi|257847270|gb|EEV71276.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9635] Length = 897 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I ++ Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEK 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D + ++AHN FD+ FI + N I Sbjct: 64 MLQQAPYFNQVAQEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L+ L + +GIT + H A D+ + + I ++ Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175 >gi|257430810|ref|ZP_05607192.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 68-397] gi|257278938|gb|EEV09557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 68-397] Length = 905 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D + ++AHN FD+ FI + N I Sbjct: 64 MLQQAPYFNQVAEEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L+ L + +GIT + H A D+ + + I ++ Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175 >gi|89890830|ref|ZP_01202339.1| DNA polymerase III [Flavobacteria bacterium BBFL7] gi|89516975|gb|EAS19633.1| DNA polymerase III [Flavobacteria bacterium BBFL7] Length = 453 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 74/195 (37%), Gaps = 7/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + I EI + + ++ F + P +KL GI ++ Sbjct: 2 YAIVDVETTGGKFNEEGITEIAIYKFDGHEIVDQ-FASLVNPEKEIQP-FVVKLTGINNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F + + +AHNA FD + E +R+ + ++ + T+ Sbjct: 60 MLARAPKFYEVAKRIIEIMQG--TVLVAHNANFDYRMLRIEFERLGYE--FHTQTLCTVE 115 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +A++ P + R + I +H A D+ ++ +M S + Sbjct: 116 LAQQLMPEEESYSLGKLTRS-LGIPITDRHRATGDALATVKLFKMLMAKDSDKTIISTSL 174 Query: 189 EDRFFKEEKKTVPNI 203 + K+ + + + Sbjct: 175 KSETRKKVEPNLKKL 189 >gi|328951319|ref|YP_004368654.1| Exonuclease RNase T and DNA polymerase III [Marinithermus hydrothermalis DSM 14884] gi|328451643|gb|AEB12544.1| Exonuclease RNase T and DNA polymerase III [Marinithermus hydrothermalis DSM 14884] Length = 185 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 61/178 (34%), Gaps = 10/178 (5%) Query: 7 MRKIV---FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALK 61 MR++V D+ET+GL+ + D+I+ +G V + + F + P LK Sbjct: 1 MRRVVYWALDVETSGLNPRRDQILAVGMVPVRGGAVRCREAFYSLVRPPSPAVVPLWGLK 60 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINKD 116 H I L+ P + + E +A + + Sbjct: 61 AHHIRPVELRGAPPLAEVLREVDRRLRGGALLVHHAAVDVAFLRRAYRALGWPWPAPRVV 120 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 A + + L+ R + + +H AL+D+ +++++ + Sbjct: 121 DTARLLERLARRRALLEPYRAPPPLDLAGARAYLGLPPYPQHHALVDALATAELFLAL 178 >gi|295400147|ref|ZP_06810127.1| Exonuclease RNase T and DNA polymerase III [Geobacillus thermoglucosidasius C56-YS93] gi|294977926|gb|EFG53524.1| Exonuclease RNase T and DNA polymerase III [Geobacillus thermoglucosidasius C56-YS93] Length = 245 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 64/175 (36%), Gaps = 8/175 (4%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + D I+ + A + + T+ +CP + P L GIT + Sbjct: 66 IIDMETTGFSPQHGDEILAMAAAKTV-RGAVKETYYTLVCPE-KAIPPHISALTGITAKD 123 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P F F + I ++ D+ F+N L + + Sbjct: 124 VQYAPRLHEALRSFLSFISG--GVMIGYHIGHDLAFLNHFLWTHYRTKWAARFFDMQPIV 181 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + ++L IS +H A D +++++ +++ + N Sbjct: 182 EMVQRRWFPTLDDAL---GHYGISCERRHTADGDVWAMAELWAQLLAELKRNNIE 233 >gi|294789265|ref|ZP_06754503.1| exonuclease, DNA polymerase III, epsilon subunit family [Simonsiella muelleri ATCC 29453] gi|294482690|gb|EFG30379.1| exonuclease, DNA polymerase III, epsilon subunit family [Simonsiella muelleri ATCC 29453] Length = 450 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D+E TG +DRI EI + + F + P ++ S +L GI++E Sbjct: 20 VILDLEATGGHFMHDRITEIAFLRFDGQNV--ERFTQLVNPQ-KEISEFVTQLTGISNEM 76 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P+F+ + + +AHN++FD + + + + T+ + Sbjct: 77 VANAPTFADVIPHILPMLRG--SLLVAHNSRFD--YTLLRNEFRRAGVPFATPTLCTVKL 132 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R +P+ S +H A D +L+D + Sbjct: 133 SRTLYPNEHKHNLDAVANRFGLTSDGKRHRAWADVAILADFLQAAL 178 >gi|260221319|emb|CBA29763.1| hypothetical protein Csp_A13780 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 307 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 63/231 (27%), Gaps = 16/231 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTN------RTFQVFLCPNGRKNSPEALKLHG 64 V D ETTGLD ++IIE+ + + + T + + P G+ PE + + G Sbjct: 41 VLDTETTGLDQAKEKIIELALLRVDIDTATGLPVGPVQVYDGLEDP-GKAIPPEVVAITG 99 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I D ++ + + +E + A + F + A Sbjct: 100 IQDADVQGQALDEARVAELMQGVDVVIAHNAGFDRPFVESRLPAFAALPWACSFADLDWK 159 Query: 125 DTLSIARRKH--------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + C ++ ++ Sbjct: 160 SLGRSSAKLESLAQELGLFYDAHRAEMDCHALLAVLAAPLPQTQSTSPGANRTGLAHLLQ 219 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 ++ F ++ + R++ ++ H + Sbjct: 220 SARNPSYRLSATNAPFEAKDLLKARGYRWNADQRVWAARLS-DDAALHAEF 269 >gi|330969506|gb|EGH69572.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. aceris str. M302273PT] Length = 203 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 7/207 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 3 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 61 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRT--REQSFACS 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +ARR P + N RY H A+ D+ + +++ + Q + Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTAHLTNELRQTHGISA 176 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLF 213 + +K IS + + Sbjct: 177 ISHQMLCSLQKVPAAKISETLKRQRGV 203 >gi|228470614|ref|ZP_04055471.1| exonuclease [Porphyromonas uenonis 60-3] gi|228307741|gb|EEK16717.1| exonuclease [Porphyromonas uenonis 60-3] Length = 189 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 62/168 (36%), Gaps = 8/168 (4%) Query: 9 KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 I D ET TG + I E+G + + + T + P G + S ++ HGI Sbjct: 6 FIAIDFETATG---QRTSICEVGICLVRNG-EIAETRSWLVQPEGNRYSYWNMQCHGIRP 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E K PSF+ ++ E + + + A +AHN FD + Q + Sbjct: 62 EDTKRAPSFAEVWQEIAEQYIGEGALLVAHNVPFDRSCLEQAAQLYELTLPELQWDCSLR 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + ++I H A D+ + + +Y++ + Sbjct: 122 RARQIYDYGCHTL---AYLCEQLSIPEGRHHRAGDDAEMCARLYLREL 166 >gi|66047527|ref|YP_237368.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. syringae B728a] gi|63258234|gb|AAY39330.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. syringae B728a] Length = 204 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 7/207 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 4 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 62 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRT--REQSFACS 117 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +ARR P + N RY H A+ D+ + +++ + Q + Sbjct: 118 LLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTAHLTNELRQTHGISA 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLF 213 + +K IS + + Sbjct: 178 ISHQMLCSLQKVPAAKISETLKRQRGV 204 >gi|326407322|gb|ADZ64393.1| ATP-dependent DNA helicase DinG [Lactococcus lactis subsp. lactis CV56] Length = 794 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 21/229 (9%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 KN R V D+E T S ++II+IG V + D TF + P+ +L Sbjct: 2 KNMTRYAVVDLEATDAHSSENKIIQIGIVLVEDGEIV-ETFSTEVNPHEPLLP-RISELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 G++D+ LK P FS + ++ + + + ++AHNA+FD G + + + R+ Sbjct: 60 GLSDKQLKTAPEFSEVAAKVRELLTD--SVFVAHNARFDYGLLEKSFLNAGLEFNEMLRV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI----------- 172 + L SL ++ + H H A+ D++ +++ + Sbjct: 118 DTVDLARVFYPTFEKYGLESLSEKLDLAHDHP--HAAVSDAYATAELLLKIEAKIQKLPR 175 Query: 173 ----KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 +++ + F KT + K ++ R + Sbjct: 176 SVLEELLRHSDNLLFESKTFLQEQLDKTKIRPAGFKVVHNIATRKFRAS 224 >gi|281492444|ref|YP_003354424.1| ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Lactococcus lactis subsp. lactis KF147] gi|281376108|gb|ADA65599.1| ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit [Lactococcus lactis subsp. lactis KF147] Length = 794 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 21/229 (9%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 KN R V D+E T S ++II+IG V + D TF + P+ +L Sbjct: 2 KNMTRYAVVDLEATDAHSSENKIIQIGIVLVEDGEIV-ETFSTEVNPHEPLLP-RISELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 G++D+ LK P FS + + + + + ++AHNA+FD G + + + R+ Sbjct: 60 GLSDKQLKTAPEFSEVAGKVRELLTD--SVFVAHNARFDYGLLEKSFLNAGLEFNEMLRV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI----------- 172 + L SL ++ + H H A+ D++ +++ + Sbjct: 118 DTVDLARVFYPTFEKYGLESLSEKLDLAHDHP--HAAVSDAYATAELLLKIEAKIQKLPR 175 Query: 173 ----KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 +++ + F KT + K ++ R + Sbjct: 176 SVLEELLRHSDNLLFESKTFLQEQLDKTKIRPAGFKVVHNIATRKFRAS 224 >gi|191638483|ref|YP_001987649.1| ATP-dependent helicase DinG [Lactobacillus casei BL23] gi|190712785|emb|CAQ66791.1| ATP-dependent helicase DinG [Lactobacillus casei BL23] gi|327382518|gb|AEA53994.1| ATP-dependent helicase [Lactobacillus casei LC2W] gi|327385715|gb|AEA57189.1| ATP-dependent helicase [Lactobacillus casei BD-II] Length = 928 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 3/94 (3%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K DR+I+ G + +T + P+ R +L G+ Sbjct: 7 FAVVDLETTGTSVKDGDRMIQFGCALMQHGKII-QTISQLVNPD-RSVPVAIQRLTGLDP 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 L P F I + N + Sbjct: 65 NRLVAAPYFEEIAKTLHQLLTDTVFVAHNVNFDY 98 >gi|15673814|ref|NP_267989.1| DinG [Lactococcus lactis subsp. lactis Il1403] gi|12724861|gb|AAK05930.1|AE006413_6 ATP-dependent helicase DinG [Lactococcus lactis subsp. lactis Il1403] Length = 794 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 21/229 (9%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 KN R V D+E T S ++II+IG V + D TF + P+ +L Sbjct: 2 KNMTRYAVVDLEATDAHSSENKIIQIGIVLVEDGEIV-ETFSTEVNPHEPLLP-RISELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 G++D+ LK P FS + ++ + + + ++AHNA+FD G + + + R+ Sbjct: 60 GLSDKQLKTAPEFSEVAAKVRELLTD--SVFVAHNARFDYGLLEKSFLNAGLEFNEMLRV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI----------- 172 + L SL ++ + H H A+ D++ +++ + Sbjct: 118 DTVDLARVFYPTFEKYGLESLSEKLDLAHDHP--HAAVSDAYATAELLLKIEAKIQKLPR 175 Query: 173 ----KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 +++ + F KT + K ++ R + Sbjct: 176 SVLEELLRHSDNLLFESKTFLQEQLDKTKIRPAGFKVVHNIATRKFRAS 224 >gi|116494972|ref|YP_806706.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334] gi|116105122|gb|ABJ70264.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334] Length = 928 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 3/94 (3%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K DR+I+ G + +T + P+ R +L G+ Sbjct: 7 FAVVDLETTGTSVKDGDRMIQFGCALMQHGKII-QTISQLVNPD-RSVPVAIQRLTGLDP 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 L P F I + N + Sbjct: 65 NRLVAAPYFEEIAKTLHQLLTDTVFVAHNVNFDY 98 >gi|330684981|gb|EGG96656.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus epidermidis VCU121] Length = 902 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + T+ + P L I + Sbjct: 6 YAVVDLETTGNQLDYDDIIQIGITFVRQNKIIG-TYHSMIR-TDLDIPPFIQALTSIEET 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I + + + ++AHN FD+ FI + N + Sbjct: 64 MLEQAPYFKEIAQDIYQQLQD--CVFVAHNVAFDLNFIKKAFKNCNIKYRPKRVMDTLEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L+ L + + I + H A D+ + + IK Q+ Sbjct: 122 FKIAFPTDKSYQLSELAEAH--DIPLNNAHRADEDATTTAHLMIKAFEKFEQLPLD 175 >gi|49483644|ref|YP_040868.1| hypothetical protein SAR1466 [Staphylococcus aureus subsp. aureus MRSA252] gi|257425521|ref|ZP_05601946.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 55/2053] gi|257428180|ref|ZP_05604578.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 65-1322] gi|257433568|ref|ZP_05609926.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus E1410] gi|257436410|ref|ZP_05612457.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus M876] gi|282904038|ref|ZP_06311926.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C160] gi|282905803|ref|ZP_06313658.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908773|ref|ZP_06316591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911034|ref|ZP_06318836.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914246|ref|ZP_06322033.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus M899] gi|282919169|ref|ZP_06326904.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C427] gi|282924353|ref|ZP_06332027.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C101] gi|283958220|ref|ZP_06375671.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus A017934/97] gi|293501272|ref|ZP_06667123.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 58-424] gi|293510233|ref|ZP_06668941.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus M809] gi|293526828|ref|ZP_06671512.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus M1015] gi|295427965|ref|ZP_06820597.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591065|ref|ZP_06949703.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus MN8] gi|81828017|sp|Q6GGV4|DING_STAAR RecName: Full=Probable ATP-dependent helicase dinG homolog gi|49241773|emb|CAG40464.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271978|gb|EEV04116.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 55/2053] gi|257275021|gb|EEV06508.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 65-1322] gi|257281661|gb|EEV11798.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus E1410] gi|257284692|gb|EEV14812.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus M876] gi|282313740|gb|EFB44133.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C101] gi|282316979|gb|EFB47353.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C427] gi|282322314|gb|EFB52638.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus M899] gi|282324729|gb|EFB55039.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327037|gb|EFB57332.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331095|gb|EFB60609.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595656|gb|EFC00620.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C160] gi|283790369|gb|EFC29186.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920386|gb|EFD97450.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus M1015] gi|291096277|gb|EFE26538.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 58-424] gi|291467177|gb|EFF09695.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus M809] gi|295128323|gb|EFG57957.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575951|gb|EFH94667.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus MN8] gi|312438140|gb|ADQ77211.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus TCH60] gi|315195353|gb|EFU25740.1| hypothetical protein CGSSa00_06780 [Staphylococcus aureus subsp. aureus CGS00] Length = 897 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D + ++AHN FD+ FI + N I Sbjct: 64 MLQQAPYFNQVAEEIYDKIKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L+ L + +GIT + H A D+ + + I ++ Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175 >gi|289550389|ref|YP_003471293.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01] gi|315660145|ref|ZP_07913002.1| exonuclease [Staphylococcus lugdunensis M23590] gi|289179921|gb|ADC87166.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01] gi|315494826|gb|EFU83164.1| exonuclease [Staphylococcus lugdunensis M23590] Length = 186 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 51/173 (29%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V+++D T +F + P S + + +HGI E Sbjct: 8 FVALDFET--ANGKRTSICSVGMVKVIDNQIT-ESFHTLINPQD-YFSKKNINVHGINPE 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F +F F +V + + I L Sbjct: 64 DVIHAPQFDYVFPYMLQFIANLPVVAHNAAFDMNVLHQSLKQAGIITPDLTYFCSYQLAK 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + H AL D+ + + +++ + Sbjct: 124 RTIDAPRYGLKHMMDFYNL-----DFHGHHDALNDAKACAMITFRLLQHYDDL 171 >gi|269139030|ref|YP_003295731.1| ribonuclease T [Edwardsiella tarda EIB202] gi|267984691|gb|ACY84520.1| ribonuclease T [Edwardsiella tarda EIB202] gi|304558963|gb|ADM41627.1| Ribonuclease T [Edwardsiella tarda FL6-60] Length = 254 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D+ + ++EI AV + D +T++ + P G SPEAL +G Sbjct: 53 VVIDVETAGFDANRNALLEIAAVTLRMNDDGWLETDQCLHFHITPFEGAVLSPEALAFNG 112 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A +AHNA FD F+ A +R Sbjct: 113 IDPHNPLRGAVSEYTALHAIFKMVRKGIKDQACNRAVVVAHNAHFDHSFLMAAAERAGLK 172 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C I H AL D+ + ++ +++ Sbjct: 173 RNPFHPFATFDTAALSGLVLGQTVLAKACLSAEIPFDSAQAHSALYDTQQTATLFCELVN 232 Query: 177 GGSQIN 182 ++ Sbjct: 233 RWKRLG 238 >gi|170764037|ref|ZP_02630402.2| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens E str. JGS1987] gi|170664085|gb|EDT16768.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens E str. JGS1987] Length = 876 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 11/213 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IVFD+E+TG+D D II+I A++L + F+ FL K S + Sbjct: 509 NIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLK---NKKSVKDSYYVHGFS 565 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + +++ + HN ++D+ + +EL+R N DTL Sbjct: 566 DEMLQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERSNLGKPKFKTFYDTL 625 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-------IKMMVGGSQ 180 I RR +P + N + H+ H A+ D ++ I+ Sbjct: 626 DIYRRFYPGNINYKLENLSKV-YDTKHKPSHDAMDDIIATGELLVRAINEKIRETSMERM 684 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 ++ + I+ KR L Sbjct: 685 ALMSKHLKAFTAISKKLNELFKIAESKRPYELV 717 >gi|167816919|ref|ZP_02448599.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 91] Length = 346 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EIG V + + T+ + P + P +L GITD + Sbjct: 17 FVDLETTGGSAAEHRITEIGVVVVNANGTS--TWTTLVDPQ-QPIPPFIQQLTGITDAMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P+F+ I ++ + ++AHNA FD GF Sbjct: 74 RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106 >gi|53720167|ref|YP_109153.1| DNA polymerase/helicase [Burkholderia pseudomallei K96243] gi|52210581|emb|CAH36564.1| possible DNA polymerase/helicase [Burkholderia pseudomallei K96243] Length = 381 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EIG V + + T+ + P + P +L GITD + Sbjct: 17 FVDLETTGGSAAEHRITEIGVVVVNANGTS--TWTTLVDPQ-QPIPPFIQQLTGITDAMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P+F+ I ++ + ++AHNA FD GF Sbjct: 74 RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106 >gi|302184787|ref|ZP_07261460.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. syringae 642] Length = 203 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 7/175 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 3 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 61 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRT--REQSFACS 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L +ARR P + N RY H A+ D+ + +++ + + Q Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTVHLTNELRQT 171 >gi|260591576|ref|ZP_05857034.1| exonuclease [Prevotella veroralis F0319] gi|260536376|gb|EEX18993.1| exonuclease [Prevotella veroralis F0319] Length = 164 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 6/167 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D ET + + + +G V + +F + P ++HG+T Sbjct: 4 FAAIDFET--ANFERCSVCSVGMVIVRGGEIV-DSFYSLIQPEPNYYHWRCTQVHGLTCA 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P F ++ + +AHNA FD G + A L D L+ + Sbjct: 61 DTDGAPVFCEVWKQIEPMIEG--LPLVAHNAPFDKGCLRACLMTYQMDYLNYEFFDTLKA 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + L ++ G +++ H AL D+ + + +++ Sbjct: 119 ARHILPHLPNHQLQTVAAACGYDLTNH-HHHALADAEACAWIAKEIL 164 >gi|222151350|ref|YP_002560506.1| hypothetical protein MCCL_1103 [Macrococcus caseolyticus JCSC5402] gi|222120475|dbj|BAH17810.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 850 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 6/166 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + V DIETTG + +D II++G + + T+ F+ + L I Sbjct: 4 KYAVVDIETTGNNLDSDEIIQVGIAIVQNKKII-ETYDTFI-ACNNEIPAFIQSLTKIDA 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L D P+FS + S + ++AHN +FD+ F+ I Sbjct: 62 FDLVDAPNFSHVASHIIKLLDG--CVFVAHNVQFDLRFLQKYFSEAGHKFQPRYIIDTVD 119 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R L S+ GI S H A+ D+ ++V+I+ Sbjct: 120 WFKIVYPSLERYQLKSIADDLGIE--LSSAHRAIDDAVATAEVFIE 163 >gi|251793080|ref|YP_003007806.1| ribonuclease T [Aggregatibacter aphrophilus NJ8700] gi|247534473|gb|ACS97719.1| ribonuclease T [Aggregatibacter aphrophilus NJ8700] Length = 217 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLD--YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET GL++K + ++E+ A V++ D + ++ + P G PE++K +G Sbjct: 23 VIIDVETAGLNAKTNALLELAAITVKMDDNGHLVPDQKCHFHIQPFEGANIDPESIKFNG 82 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + Q + +AHNA FD GFI A QR N Sbjct: 83 IDIDNPLRGAISENIAISEMFKMVRRAQKDAECQRSIIVAHNAAFDQGFIMAAAQRTNAK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I H AL D+ ++++ M+ Sbjct: 143 RNPFHPFSTFDTATLSGFMFGQTVLIKACQAAKIPFDGSQAHSALYDTERTAELFCYMVN 202 Query: 177 GGSQIN 182 + Sbjct: 203 HLKTLG 208 >gi|254525958|ref|ZP_05138010.1| exonuclease [Prochlorococcus marinus str. MIT 9202] gi|221537382|gb|EEE39835.1| exonuclease [Prochlorococcus marinus str. MIT 9202] Length = 259 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 71/230 (30%), Gaps = 12/230 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + ++ D ETTGLD D +IEIG + + +F + N ++ Sbjct: 37 KILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNNEAEHVNGISADVT 96 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + +D +F ++ DF +AHN +FD + S Sbjct: 97 NISQPWEDGLNFFLKLVDYSDFI-------VAHNVEFDKKWFGKGRLPKLNKKWICSLED 149 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVGGSQIN 182 S + +L + HR+ S + ++++ ++ Sbjct: 150 INWSFQKSLKSRPSVTDLALSFSIPVWNLHRALSDCFYISEVFKKCDNLEELLLKATEPR 209 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 F +K + K ++T E D ++ L Sbjct: 210 FLYKALVSYEERSLAKNAGFRWNSHVQGAWSRKLTTNEAKNLDFRVEILN 259 >gi|183599959|ref|ZP_02961452.1| hypothetical protein PROSTU_03480 [Providencia stuartii ATCC 25827] gi|188022234|gb|EDU60274.1| hypothetical protein PROSTU_03480 [Providencia stuartii ATCC 25827] Length = 234 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 5/163 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTGLD + DRI+ IG V + D ++ ++ N P + I Sbjct: 55 IDLETTGLDPEKDRILSIGMVTIADSKILLKSAQHYYVN----DNEPVKAETAVINHITP 110 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + S+ F +E + I + ++ I + PL ++ Sbjct: 111 EQLSDGVSLPHAIASFLHEAKGKCILAHGSAIEHAFLSKALNIKELPLLWFDTLNIEKTL 170 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +RND + R + H AL D+ +++++ Sbjct: 171 LSHKNINRNDFSLSALRSRYQLPDYDAHNALSDAIATAELFLA 213 >gi|325288177|ref|YP_004263967.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489] gi|324323631|gb|ADY31096.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489] Length = 454 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 71/195 (36%), Gaps = 7/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ DIETTG + I EI + ++ F + P +KL GI D+ Sbjct: 2 YVILDIETTGGKFNEEGITEIAIHRFDGHKVVDK-FISLVNPEKEIQP-FVVKLTGINDK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I + ++A +AHNA+FD + E +R+ + + LS Sbjct: 60 MLRTAPKFYEIAKRIVE--ITEDAVLVAHNAQFDYRILRTEFRRLGYNFERKTLCTVNLS 117 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + + I +H A D+ ++ ++ S + Sbjct: 118 KELIPDKESYSL---GKLVRSLGIPVSDRHRANGDALATLQLFKLLLAKDSNKSIIKTVI 174 Query: 189 EDRFFKEEKKTVPNI 203 ++ E N+ Sbjct: 175 KEGSMGELSDRQINL 189 >gi|296102681|ref|YP_003612827.1| ribonuclease T [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057140|gb|ADF61878.1| ribonuclease T [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 216 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + T + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEEGWLTPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + N A +AHNA FD F A +R + Sbjct: 80 IDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCSRAIMVAHNATFDHSFTMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C GI H AL D+ ++++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACITAGIEFDGTQAHSALYDTERTAELFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|330815857|ref|YP_004359562.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia gladioli BSR3] gi|327368250|gb|AEA59606.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia gladioli BSR3] Length = 388 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 5/114 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + + RI EIG VE+ + T+ + P + +L GI+DE + Sbjct: 17 FVDLETTGGSAADHRITEIGVVEVGPQGVS--TWTSLIDPQ-QPIPAFIQQLTGISDEMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + P+FSSI +E + +IAHNA FD GF+ AE +R Sbjct: 74 RGAPTFSSIAAELFARLEG--RLFIAHNASFDRGFLRAEFERAGFAFNPDMLCT 125 >gi|313768005|ref|YP_004061436.1| hypothetical protein BpV1_006c [Bathycoccus sp. RCC1105 virus BpV1] gi|312599612|gb|ADQ91633.1| hypothetical protein BpV1_006c [Bathycoccus sp. RCC1105 virus BpV1] Length = 432 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 63/221 (28%), Gaps = 15/221 (6%) Query: 7 MRKIVFDIETTGLD-------------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53 M I +D ETTGL R++ + V+ + ++ + P+ Sbjct: 1 MNYIAWDTETTGLPMGYKKATPDNIHLFDKCRMLTLAFVKYSSKGRELSSYHGLVYPDTF 60 Query: 54 KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQR 112 E+ +HGIT E K + + +AHN+ FD +R Sbjct: 61 DVPQESTNVHGITHEHAIHKGQPFGYVYAAFKEAVSNTSILVAHNSSFDENCFFSECYRR 120 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 R + L H AL DS +Y Sbjct: 121 GFDTEPFKHVHFVDTLKMARSVLPGLFNHKLLTVYKHYFGKEFDAHDALNDSRACGTIYP 180 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 ++ + + ++ ++ K+ K + Sbjct: 181 -LLRDNEFKMKDVGIEKVTLKASDIASIIGMNPYKKPKEVL 220 >gi|225010791|ref|ZP_03701259.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium MS024-3C] gi|225004999|gb|EEG42953.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium MS024-3C] Length = 204 Score = 56.9 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61 + IV D ETTG D + +RI+ IGAV L +F+V+L + + + Sbjct: 18 KFIVIDTETTGFDYEKERILCIGAVLLEKSQIAVKDSFEVYLTQDHYNSDSTPIH 72 >gi|329298346|ref|ZP_08255682.1| ribonuclease T [Plautia stali symbiont] Length = 222 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A +++ + + T + P G +PEAL G Sbjct: 20 VVIDVETAGFNAQTDALLEIAATTLKMDEDGWLHRDETLHFHVEPFEGAILNPEALAFTG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A +AHNA FD F+ A +R Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGTKDSGCNRAIIVAHNATFDHNFLMATAERTGMK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L CK GI H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACKAAGIDFDSTQAHSALYDTKQTATLFCELVN 199 Query: 177 GGSQINFGFKTNEDRFFKEEKKT 199 ++ + +++ Sbjct: 200 RWKRLGGWPLAVSEEPAEDDASA 222 >gi|261821926|ref|YP_003260032.1| ribonuclease T [Pectobacterium wasabiae WPP163] gi|261605939|gb|ACX88425.1| ribonuclease T [Pectobacterium wasabiae WPP163] Length = 223 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 71/199 (35%), Gaps = 13/199 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++E+ AV L + + + T + P G P AL +G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A R + Sbjct: 80 IDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAADRCSLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D++ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCELVN 199 Query: 177 GGSQINFGFKTNEDRFFKE 195 ++ E+ ++ Sbjct: 200 RWKRLGGWPLALEENAAED 218 >gi|119946100|ref|YP_943780.1| ribonuclease T [Psychromonas ingrahamii 37] gi|119864704|gb|ABM04181.1| RNAse T [Psychromonas ingrahamii 37] Length = 207 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVE--LL--DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ DIET+GL+++ D I+EI A+ + Y + P G P+AL G Sbjct: 15 VIIDIETSGLNAQTDAILEIAAILPAMDSQGYLFAAEKIHFNVLPFEGANLDPKALAFTG 74 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + +AHNA FD GFIN +R N Sbjct: 75 IDPFNPLRAAVDERDALTEIFKLVRKHQKQNLCNRSIIVAHNATFDQGFINKATERCNLK 134 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + + + L C++ I ++ H AL D+ + +D++ M+ Sbjct: 135 RMPFHPFVSFDTASMAGLILGQTVLAKACQQASIPYDNKQAHSALYDTEVTADLFFYMVN 194 Query: 177 GGSQIN 182 + Sbjct: 195 KLKALG 200 >gi|50120858|ref|YP_050025.1| ribonuclease T [Pectobacterium atrosepticum SCRI1043] gi|81827142|sp|Q6D5W0|RNT_ERWCT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|49611384|emb|CAG74831.1| ribonuclease T [Pectobacterium atrosepticum SCRI1043] Length = 223 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 72/199 (36%), Gaps = 13/199 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++E+ AV L + + + T + P G P AL +G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 80 IDPTNPLRGAVSEYDALHEIFKVVRKGIKDRGCNRAIIVAHNATFDHSFMAAAAERCSLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D++ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCELVN 199 Query: 177 GGSQINFGFKTNEDRFFKE 195 ++ E+ ++ Sbjct: 200 RWKRLGGWPLALEESSLED 218 >gi|88860421|ref|ZP_01135059.1| RNase T [Pseudoalteromonas tunicata D2] gi|88817619|gb|EAR27436.1| RNase T [Pseudoalteromonas tunicata D2] Length = 221 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 75/203 (36%), Gaps = 13/203 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI +++ D ++T + P G A++ +G Sbjct: 19 VVIDVETAGFNNQTDALLEIAVTTLKMDDEGVLSLDKTLHFHITPFEGANIEQAAIEFNG 78 Query: 65 ITDE--------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I S+ Q + +AHNA FD GF+NA ++R Sbjct: 79 IDPFSALRGAVEESIAFKEICKFVSKSQKDAGCQRSVIVAHNAAFDQGFVNAAVERCKIK 138 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + + L C GI + H A+ D+ ++++ ++ Sbjct: 139 RTPFHPFVSFDTTSLAGLALGQTVLAKACIAAGIEFDNSQAHSAVYDTERTAELFCFIVN 198 Query: 177 GGSQINFGFKTNEDRFFKEEKKT 199 + NE +E Sbjct: 199 KWQALGGWPIINEQEETSDEDVN 221 >gi|289550764|ref|YP_003471668.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis HKU09-01] gi|289180296|gb|ADC87541.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis HKU09-01] Length = 893 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 2/165 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + T+ + + P L I ++ Sbjct: 6 YAVVDLETTGNQLDYDEIIQIGITFVRGQKIVG-TYHSMIN-TDVEIPPFIQALTSIEED 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK P F + + + + + + I+ P ++ Sbjct: 64 MLKQAPYFHEVAEDVYKQLKDSVFVAHNVSFDLTFIKKAFKRNHIHFQPKKVIDTVELFK 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 IA S + + + +HR+ A + L+ + K Sbjct: 124 IAFPTDKSYQLSELAEAHHIPLDNAHRADEDATTTAKLMIKAFQK 168 >gi|109948241|ref|YP_665469.1| DNA polymerase III subunit epsilon [Helicobacter acinonychis str. Sheeba] gi|109715462|emb|CAK00470.1| DNA polymerase III [Helicobacter acinonychis str. Sheeba] Length = 282 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + L GI E Sbjct: 70 FIDLETTGSCPLKHEILEIGAVQVSGGKIINR-FETLVK--VKSVPDYISDLTGIAYEDT 126 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 127 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 172 >gi|324990933|gb|EGC22868.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK353] Length = 814 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S +II+IG V + + T +T++ + P+ + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-GAKIIQIGIVLIENGIIT-KTYETDVNPH-EDLDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ + A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ + L +LC IS + H AL D+ + +++K+ + Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172 Query: 182 NFGF 185 Sbjct: 173 PKAL 176 >gi|261363839|ref|ZP_05976722.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria mucosa ATCC 25996] gi|288568430|gb|EFC89990.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria mucosa ATCC 25996] Length = 479 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 8/175 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + DR+ E+ + S ++ + P + +L GI+++ Sbjct: 34 VVVDLETTGGNLYQDRVTEVALLRFDGQSVC--RYEWLVNP-CKPIPEFVAQLTGISNKM 90 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K P F I S+ A +AHN++FD F+ E +R D + + T+ + Sbjct: 91 VKTAPLFEEIASQLLPLLQG--AVVVAHNSRFDYTFLRHEFRRAGID--FAAPALCTVQL 146 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 +RR +P I+ ++H A+ D LSD + + ++ Sbjct: 147 SRRLYPEFYKHNLDSIIERN-AIAVENRHRAMTDVLALSDYLEHSLREKNTEDWD 200 >gi|227111797|ref|ZP_03825453.1| ribonuclease T [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 223 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 13/198 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++E+ AV L + + + T + P G P AL +G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 80 IDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAAERCSLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI H AL D++ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCELVN 199 Query: 177 GGSQINFGFKTNEDRFFK 194 ++ E+ + Sbjct: 200 RWKRLGGWPIALEENSLE 217 >gi|167628537|ref|YP_001679036.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1] gi|167591277|gb|ABZ83025.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1] Length = 255 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 15/182 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-------TN--RTFQVFLCPNGRKNSPEA 59 +VFD ETTGL ND +I +G V L + T R F + P+ R A Sbjct: 62 FVVFDTETTGLSVPNDDVIALGGVALPPGGEGAEWTEDTGKVRVFDRLVNPH-RPIPVLA 120 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 ++ GI D+ + +P+ + +F DF + A +AH FDVGF++ L+ + Sbjct: 121 REITGIDDDMVFSQPTIYPVLDDFLDFIDG--AVLVAHGIAFDVGFLDKYLRPLRTK--L 176 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +IDT++++R P I+ R +H AL D+ + +D++ M+V Sbjct: 177 YHPVIDTITLSRVLEPFRAEHSLD-ALVADYGITPRRRHSALGDAQMTADLFAAMLVRLQ 235 Query: 180 QI 181 ++ Sbjct: 236 KL 237 >gi|170764220|ref|ZP_02638287.2| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|170715785|gb|EDT27967.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens CPE str. F4969] Length = 876 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 4/166 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IVFD+E+TG+D D II+I A++L + F+ FL K S + Sbjct: 509 NIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLK---NKKSVKDSYYVHGFS 565 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + +++ + HN ++D+ + +EL+R N DTL Sbjct: 566 DEMLQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERSNLGKPKFKTFYDTL 625 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I RR +P + N + H+ H A+ D ++ ++ Sbjct: 626 DIYRRFYPGNINYKLENLSKV-YDTKHKPSHDAMDDIIATGELLVR 670 >gi|317010079|gb|ADU80659.1| DNA polymerase III subunit epsilon [Helicobacter pylori India7] Length = 287 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYISDLTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS + N+ ++AHNA FD F+ PL Sbjct: 132 LNAPSVHEALQKL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177 >gi|317154702|ref|YP_004122750.1| exonuclease RNase T and DNA polymerase III [Desulfovibrio aespoeensis Aspo-2] gi|316944953|gb|ADU64004.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio aespoeensis Aspo-2] Length = 179 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 56/153 (36%), Gaps = 4/153 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + D ET D+K D +G V + R + + P R+ +P +++HGI Sbjct: 9 RFVAIDFET--ADAKRDSACAVGLVVVDRGEIVARDY-RLIRPPRRRFNPFCVQVHGIHW 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + D+P+F ++ + E +AHNA FD + A + P + Sbjct: 66 EDVADQPAFGELWPDLS-PLFEGADFLVAHNASFDKSVLAACCRESRCLPPVQPFLCTVQ 124 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 S N C H + A Sbjct: 125 LARTTWQLPSNKLPNVCCHLGITLTHHHAASDA 157 >gi|255655351|ref|ZP_05400760.1| putative exonuclease [Clostridium difficile QCD-23m63] Length = 258 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 84/233 (36%), Gaps = 17/233 (7%) Query: 7 MRKIVFDIE-TTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPN-GRK 54 M I+FD+E G D K + II+IGA++L TF ++ P ++ Sbjct: 1 MEYIIFDLEFNQGFDKKFNKTISNKKCPFEIIQIGAIKLDSKFNIIDTFNSYVKPTIYKE 60 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQR 112 P ++ I D D P+F +++ F F + Q+ A ++ + Sbjct: 61 IHPFISRMTNIKDSDFNDSPTFPEVYNNFIKFISSQDPILCVWGAGDLKELYRNINYHKL 120 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + I + +P+ ++ S H AL D++ + V+I Sbjct: 121 PSNSLPKSYINIQQHASKYFNNPAGKSIGLQNAISILELDEKMSYHNALNDAYYTAKVFI 180 Query: 173 KMMVGGSQINFGFKTN--EDRFFKEEKKTVPNISLLKRDKPLFTR-ITKEELD 222 K+ + T+ KK V L + + R +TK+E Sbjct: 181 KIYNPSIVPDIYLYTSIKPKTIRYSNKKRVDYDKLFDEFRKILNRELTKDEKK 233 >gi|144898742|emb|CAM75606.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum gryphiswaldense MSR-1] Length = 173 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 10/183 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET D+ D + + + + T+ + P + S +HGIT Sbjct: 1 MDFIALDFET--ADNGRDSACSLALAVVKNGT-VAETWHRLIRPP--RASQMFTHIHGIT 55 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +KD+P F + E D + AHNA FD G + + + + T Sbjct: 56 WDMVKDQPDFGHFWPEIRDLIDAAPF-LAAHNAPFDKGVLAECCRAHGHGAP-LTPFVCT 113 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + +AR L +C+ + H AL D+ +++ + + G Sbjct: 114 VRVARDTWNLRPTKLPDVCRFL---AQPLNHHDALSDAVACAEIMLAALRDGYDPKRQLG 170 Query: 187 TNE 189 ++ Sbjct: 171 PHQ 173 >gi|315585931|gb|ADU40312.1| DNA polymerase III subunit epsilon [Helicobacter pylori 35A] Length = 287 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVRGGGIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 132 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177 >gi|261868521|ref|YP_003256443.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413853|gb|ACX83224.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D11S-1] Length = 217 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLC-PNGRKNSPEALKLHG 64 +V D+ET GL++K D ++E+ A+ L ++ + G PE+LK +G Sbjct: 23 VVIDVETAGLNAKTDALLELAAITLKMDENGNLLPDQKCHFHIQAFEGANIDPESLKFNG 82 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + Q + +AHNA FD GF+ A QR+N Sbjct: 83 IDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNAAFDQGFLMAAAQRMNAK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I + H AL D+ ++++ M+ Sbjct: 143 RNPFHPFSTFDTATLSGFMFGQTVLVKACQAAKIPFDSQQAHSALYDTERTAELFCYMVN 202 Query: 177 GGSQIN 182 Q+ Sbjct: 203 HLKQLG 208 >gi|332291494|ref|YP_004430103.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332169580|gb|AEE18835.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 1463 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 36/260 (13%), Positives = 77/260 (29%), Gaps = 36/260 (13%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + R I+I + + P+G + Sbjct: 2 YLIFDTETTGLPKNWNAPLTDSDNWPRAIQIAWQLHDEMGNVIEHQDYLIKPDGFDIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A ++HGI+ + S ++ ++ + N FD + AE R+N Sbjct: 62 AERIHGISTALAERDGIELSEVLSKFNIALSKSKYVVGQNVGFDTNIMGAEFHRLNIGND 121 Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + ++ H A D + Sbjct: 122 LQELPVLDTCTEKTATLCQLPGGRGGKFKLPTLTELHKHLFGEGFGEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL-------LKRDKPLF--------- 213 +++++ D F + + I+ LK+ Sbjct: 182 CFLELIRQRVYTKEELDVAPDYFERFSQSNPQPITFIGLKHINLKKASAKIAQALAAQDD 241 Query: 214 -TRITKEELDEHDKTIQTLG 232 I+K E++E+ + + + Sbjct: 242 TPEISKAEIEENKEQLSDVK 261 >gi|255523029|ref|ZP_05390001.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans P7] gi|255513144|gb|EET89412.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans P7] Length = 862 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 4/166 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IVFD+E+TG+D D II+I A+++ + F+ FL S + + Sbjct: 496 NIIVFDVESTGVDVTEDEIIQIAAIKVNKNGQVTEKFERFLK---NNKSVKNSEHVHGFS 552 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + K +++ + HN ++D+ + +ELQR DTL Sbjct: 553 DEFLKKNGEDKNTVLKEFVKFSEDSVIVGHNVQYDINILTSELQRAGLGEPKFKAFYDTL 612 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I RR HP+ RN ++ H A+ D D+ ++ Sbjct: 613 DIYRRFHPNLRNHKLETLSHI-FETENKPSHDAMDDIQATKDILVR 657 >gi|317014965|gb|ADU82401.1| DNA polymerase III subunit epsilon [Helicobacter pylori Gambia94/24] Length = 287 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVRGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 132 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177 >gi|307638212|gb|ADN80662.1| DNA polymerase III epsilon subunit [Helicobacter pylori 908] gi|325996805|gb|ADZ52210.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2018] gi|325998398|gb|ADZ50606.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2017] Length = 287 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVRGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 132 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177 >gi|296451339|ref|ZP_06893077.1| exonuclease superfamily protein [Clostridium difficile NAP08] gi|296880311|ref|ZP_06904276.1| exonuclease superfamily protein [Clostridium difficile NAP07] gi|296259755|gb|EFH06612.1| exonuclease superfamily protein [Clostridium difficile NAP08] gi|296428754|gb|EFH14636.1| exonuclease superfamily protein [Clostridium difficile NAP07] Length = 258 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 84/233 (36%), Gaps = 17/233 (7%) Query: 7 MRKIVFDIE-TTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPN-GRK 54 M I+FD+E G D K + II+IGA++L TF ++ P ++ Sbjct: 1 MEYIIFDLEFNQGFDKKFNKTISNEKCPFEIIQIGAIKLDSKFNIIDTFNSYVKPTIYKE 60 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQR 112 P ++ I D D P+F +++ F F + Q+ A ++ + Sbjct: 61 IHPFISRMTNIKDSDFNDSPTFPEVYNNFIKFISSQDPILCVWGAGDLKELYRNINYHKL 120 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + I + +P+ ++ S H AL D++ + V+I Sbjct: 121 PSNSLPKSYINIQQHASKYFNNPAGKSIGLQNAISILELDEKMSYHNALNDAYYTAKVFI 180 Query: 173 KMMVGGSQINFGFKTN--EDRFFKEEKKTVPNISLLKRDKPLFTR-ITKEELD 222 K+ + T+ KK V L + + R +TK+E Sbjct: 181 KIYNPSIVPDIYLYTSIKPKTIRYSNKKRVDYDKLFDEFRKILNRELTKDEKK 233 >gi|150024446|ref|YP_001295272.1| DNA polymerase III, alpha and epsilon subunits [Flavobacterium psychrophilum JIP02/86] gi|149770987|emb|CAL42454.1| Probable DNA polymerase III, alpha and epsilon subunits [Flavobacterium psychrophilum JIP02/86] Length = 1508 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 67/230 (29%), Gaps = 19/230 (8%) Query: 9 KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL D R I+I + + P G + Sbjct: 2 YLIFDTETTGLPRSWSAPITDTNNWPRCIQIAWQLHDEMGNLIEHQDYLIKPEGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A ++HGI+ E ++ E ++ + + N FDV + E R N Sbjct: 62 AERIHGISTELAIEQGVSLQEVLEQFNIALSKTKFIVGQNVGFDVNIMGCEFYRANISSD 121 Query: 119 DPSRIIDTLSIARRKHP---------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + +Y I H A D + Sbjct: 122 MVKMPVLDTCTEVTASLLKLPGGRGGRFKLPTLTELHQYLFQIPFSEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 +++++ F + ++K I L+ + E Sbjct: 182 CFLELIKREVFTKEELDVEAHYFHEFQRKNQGEIQLIGLKHINLKEASAE 231 >gi|157370439|ref|YP_001478428.1| ribonuclease T [Serratia proteamaculans 568] gi|157322203|gb|ABV41300.1| ribonuclease T [Serratia proteamaculans 568] Length = 226 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIET G ++K D ++EI AV L + + + T + P G PEAL +G Sbjct: 31 VVIDIETAGFNAKTDALLEIAAVTLKMDEDGWLQQDETLHFHVEPFEGANLQPEALAFNG 90 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 91 IDPSNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFLMAAAERASLK 150 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C I H AL D+ + ++ +++ Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKACIAADIPFDSAQAHSALYDTEQTAQLFCELVN 210 Query: 177 GGSQIN 182 ++ Sbjct: 211 RWKRLG 216 >gi|261880650|ref|ZP_06007077.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332603|gb|EFA43389.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 907 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 60/181 (33%), Gaps = 11/181 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD ETTGL+ +D +I+I A + + ++ F V + GR+ + Sbjct: 528 VVFDTETTGLNVFDDDVIQIAAERIRNGKTVDK-FSVHIE-TGREIPKMLGDIPNPIIGE 585 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---------LQRINKDPLDP 120 + + + I HNA++D ++ Q+ + LD Sbjct: 586 REHQTIRPHEEGLQMFLDFVGSDVLIGHNAEYDYRIMDYNLRRYLPHVDWQKEHPVCLDS 645 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +II L + + ++ + + + +++ + Sbjct: 646 LKIIRLLRPELKAFKLKLLLQELHLEGTNSHLADDDVNATVSLLRYCNTRAQELLNSQKE 705 Query: 181 I 181 Sbjct: 706 F 706 >gi|218548753|ref|YP_002382544.1| ribonuclease T [Escherichia fergusonii ATCC 35469] gi|218356294|emb|CAQ88912.1| ribonuclease T (RNase T) [Escherichia fergusonii ATCC 35469] gi|324113426|gb|EGC07401.1| ribonuclease T [Escherichia fergusonii B253] gi|325497162|gb|EGC95021.1| ribonuclease T [Escherichia fergusonii ECD227] Length = 215 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDNTLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A +AHNA FD GF+ A R + Sbjct: 80 IDPNDPQRGAVREYDALHAIFKMVRKGIKDTGCNRAIMVAHNATFDHGFLMAAANRASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACTAAGMAFDSTQAHSALYDTEQTAMLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|171056716|ref|YP_001789065.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6] gi|170774161|gb|ACB32300.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6] Length = 210 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 6/170 (3%) Query: 7 MRKI-VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M I V D ETTG+ + R EIGAV + + +Q + +G P +L G Sbjct: 1 METIAVIDFETTGMTPSQGARATEIGAVLVRGGEIVGQ-YQSLMY-SGVHIPPFIEQLTG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I++ L+D P + E + +AHNA FD GF AE +R +P Sbjct: 59 ISNAMLRDAPPAEQVMREVAA--FTRGCPMVAHNAAFDRGFWLAERERAGCEPDLAQEFA 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ ++RR + + N + ++ H AL D+ + + +++ Sbjct: 117 CTVLLSRRLNTEAPNHKLGTLASWFGLPNNGRAHRALADALTTAHLLVRL 166 >gi|261840222|gb|ACX99987.1| DNA polymerase III subunit epsilon [Helicobacter pylori 52] Length = 323 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 111 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYITELTGIAYEDT 167 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 168 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 213 >gi|239636871|ref|ZP_04677870.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus warneri L37603] gi|239597545|gb|EEQ80043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus warneri L37603] Length = 902 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 59/176 (33%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + T+ + P L I + Sbjct: 6 YAVVDLETTGNQLDYDDIIQIGITFVRQNKIIG-TYHSMIR-TDLDIPPFIQALTSIEET 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I + + E ++AHN FD+ FI + N + Sbjct: 64 MLEKAPYFKEIAHDIYQQLQE--CVFVAHNVAFDLNFIKKAFKNCNIKYRPKRVLDTLEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L+ L + + I + H A D+ + + IK Q+ Sbjct: 122 FKIAFPTDKSYQLSELAEAH--DIPLNNAHRADEDATTTAQLMIKAFEKFEQLPLD 175 >gi|149926803|ref|ZP_01915062.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] gi|149824355|gb|EDM83573.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] Length = 308 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 55/187 (29%), Gaps = 13/187 (6%) Query: 1 MIRKNKMR------------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 ++R+ +MR +V D ETTGLD +IE+GAV + T V Sbjct: 26 VLRRIQMRSSFGGQINSPVKVLVVDTETTGLDYATCEVIEVGAVLIEVDQDTGAIGAVLG 85 Query: 49 CPNGRKNSP-EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 G + + + + A ++AHNA FD F+ Sbjct: 86 TFGGLEEPKVAITPENSAIHGITNEMVKGQRFDEAALKALCSEAALFVAHNAAFDKPFML 145 Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 + K + + L+ +G + + + Sbjct: 146 RRFPWLEKSIWACTFRELPWTQENYSGRKLEYLLSDCGYFHGAHRAVEDCNALVHVLAQP 205 Query: 168 SDVYIKM 174 +M Sbjct: 206 MKTSQRM 212 >gi|126665981|ref|ZP_01736961.1| ribonuclease T [Marinobacter sp. ELB17] gi|126629303|gb|EAZ99920.1| ribonuclease T [Marinobacter sp. ELB17] Length = 214 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 64/186 (34%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + D ++EI AV + + T+ + P G +L G Sbjct: 21 VVVDVETAGFNPAKDALLEIAAVMVTMDENGFLHRGETYLQQIDPFEGANFEQSSLDFTG 80 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + S + F+ + A + HNA FD F+ A +R + Sbjct: 81 IDPWDPEREAVPEREGLSEIFSPIRKAMKAFDCKRAVLVGHNATFDHNFVFAASERADIK 140 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L CK I + H A D+ +D++ ++ Sbjct: 141 RNPFHPFSTFDTATLAGLAYGHTVLAQACKLARIPFDSKEAHSAAYDAEKTADLFCSIVN 200 Query: 177 GGSQIN 182 ++ Sbjct: 201 RWQELG 206 >gi|294629410|ref|ZP_06707970.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14] gi|292832743|gb|EFF91092.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14] Length = 653 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 9/172 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ET+GL ++ DRI+ I + D ++T + + P P + +HG+T E L Sbjct: 22 VDVETSGLIARRDRILSIAVLTFGPDGTQTGE-YSTLVNPG---CDPGPVHIHGLTAERL 77 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D P+F + + +AHNA+FD F+ E R R+ Sbjct: 78 RDAPAFEQVAGRIGALLQD--RVMVAHNAQFDYDFLAHEFARARLCLPVNQRLCTLALNR 135 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R + P++ L SL YG+ + H AL D+ +L+ ++ + ++++ Sbjct: 136 RVEPPAADLSLASLAAHYGVPQTRA--HDALDDTRVLAGIFRSSLSEAARLD 185 >gi|208435412|ref|YP_002267078.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27] gi|208433341|gb|ACI28212.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27] Length = 264 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 52 FIDLETTGSCPIKHEILEIGAVQVRGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 108 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 109 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 154 >gi|118580761|ref|YP_902011.1| DNA-directed DNA polymerase [Pelobacter propionicus DSM 2379] gi|118503471|gb|ABK99953.1| DNA-directed DNA polymerase [Pelobacter propionicus DSM 2379] Length = 170 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 5/165 (3%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ET+GL + R+IE+ AV L + + L N + A ++HGI E Sbjct: 7 VVDVETSGLSPRGGGRVIEVAAVLLREGKVVGE-LESLLRVNCSIHPAAA-RVHGIGWEM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ P ++ F F +AHNA FD+GFI EL + + S ++ Sbjct: 65 LRHAPEPEDVWRRFLSFV--GRRPLVAHNAPFDMGFIRHELALLGLPLANRSICTLRMAR 122 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R +S G H AL D+ L + V++ M Sbjct: 123 RRFPELASHRLEALARHLLGSIPEDCRLHRALGDARLAARVWLAM 167 >gi|157151695|ref|YP_001450717.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gordonii str. Challis substr. CH1] gi|157076489|gb|ABV11172.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus gordonii str. Challis substr. CH1] Length = 824 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 5/111 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +++ M+ + D+E TG S +II++G V L D + T+Q + P+ + Sbjct: 1 MKRKNMKYAIVDLEATGTGS-TAKIIQVGIVILEDG-EIKETYQTDINPHEALE-EHIKQ 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 L G++D+ L P FS + E ++ + A ++AHN KFD + L Sbjct: 58 LTGLSDQRLSQAPDFSQVAREIYELIED--AVFVAHNVKFDANLLAESLFW 106 >gi|255306302|ref|ZP_05350473.1| putative exonuclease [Clostridium difficile ATCC 43255] Length = 258 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 82/236 (34%), Gaps = 23/236 (9%) Query: 7 MRKIVFDIETTGLDSKND--------------RIIEIGAVELLDYSKTNRTFQVFLCPN- 51 M I+FD+E + D II+IGA++L TF ++ P Sbjct: 1 MEYIIFDLE---FNQGFDKKLNKTVSNEKCPFEIIQIGAIKLDSKFNIIDTFNSYIKPTI 57 Query: 52 GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAE 109 ++ P ++ I + D P+F +++ F F + Q+ A ++ Sbjct: 58 YKEIHPFISRMTNIKNSDFNDSPTFPEVYNNFIKFISSQDPILCVWGAGDLKELYRNINY 117 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + I + +P+ ++ S H AL D++ + Sbjct: 118 HKLPSNSLPKSYINIQQHASKYFNNPAGKSIGLQNAISILELDEKMSYHNALNDAYYTAK 177 Query: 170 VYIKMMVGGSQINFGFKTN--EDRFFKEEKKTVPNISLLKRDKPLFTR-ITKEELD 222 V+IK+ + T+ KK V L + + R +TK+E Sbjct: 178 VFIKIYNPSIVPDIYLYTSIKPKTIRYSNKKRVDYDKLFDEFRKILNRELTKDEKK 233 >gi|302519143|ref|ZP_07271485.1| DNA polymerase III [Streptomyces sp. SPB78] gi|302428038|gb|EFK99853.1| DNA polymerase III [Streptomyces sp. SPB78] Length = 664 Score = 56.5 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 9/165 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ET+GL ++ DR++ + V + D +T F + P P + +HG+T E L Sbjct: 75 VDVETSGLMARRDRVLSVAVVTMGPDGEQTGE-FSTLVDPG---CDPGPVDVHGLTRERL 130 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P+F I + +AHNA+FD F+ E R R+ Sbjct: 131 SGAPAFGQIAGRLGAMLQD--RVLVAHNAQFDYDFLAHEFARARLYLPVTRRLCTLALNR 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + P+ L SL YG+ + H AL D+ +L+ ++++ Sbjct: 189 QVDPPTRDMKLGSLAAHYGVPRTRA--HDALDDTRVLAGIFLRAT 231 >gi|94499178|ref|ZP_01305716.1| ribonuclease T [Oceanobacter sp. RED65] gi|94428810|gb|EAT13782.1| ribonuclease T [Oceanobacter sp. RED65] Length = 222 Score = 56.5 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 69/203 (33%), Gaps = 13/203 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S+ D ++EI V + + P G AL G Sbjct: 19 VVVDVETAGFNSQTDALLEIAMVIMDMDEQGNMLPGPAMSAHIKPFEGANLEQSALDFTG 78 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HNA FD+GF+NA ++R N Sbjct: 79 IDPFDPDRRAEDEGPALKDMFKTIRKAMKVKGCKRAILVGHNAHFDLGFLNAAIERNNIK 138 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L CK GI + S H AL D+ ++++ ++ Sbjct: 139 RSPFHPFSGFDTATLSGLALGHTVLARSCKLAGIDFDNHSAHSALYDTQKTAELFALIVN 198 Query: 177 GGSQINFGFKTNEDRFFKEEKKT 199 Q+ E + EK Sbjct: 199 KWKQLGGWDWAYEQHVKENEKDE 221 >gi|229552292|ref|ZP_04441017.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus rhamnosus LMS2-1] gi|258539701|ref|YP_003174200.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus rhamnosus Lc 705] gi|229314364|gb|EEN80337.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus rhamnosus LMS2-1] gi|257151377|emb|CAR90349.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus rhamnosus Lc 705] Length = 933 Score = 56.5 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 8/209 (3%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K DR+I+ G + +T + P+ R +L GI+ Sbjct: 7 FAVVDLETTGTSVKDGDRMIQFGCALVRHGKII-QTISQMINPD-RSVPQTIQRLTGISP 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L P F + + ++AHN FD F+NAE +RI L I Sbjct: 65 ERLVAAPYFDEVAPALHQVLTK--TVFVAHNVNFDYPFLNAEFERIGLPKLQLEAIDTVE 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-MVGGSQINFGFK 186 S L+ L I H + H A D+ + + +++ + + Sbjct: 123 LAQVLLPEISSFRLSDL--TTHFAIQHDNPHQADSDATSTAKLLLQLKARFQALPTPTQQ 180 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 R ++T + ++ + Sbjct: 181 ALIQRHDGFIRETGDYLKMIASPPRPLKK 209 >gi|199598401|ref|ZP_03211820.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001] gi|258508490|ref|YP_003171241.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus rhamnosus GG] gi|199590720|gb|EDY98807.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001] gi|257148417|emb|CAR87390.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus rhamnosus GG] gi|259649800|dbj|BAI41962.1| DNA helicase [Lactobacillus rhamnosus GG] Length = 933 Score = 56.5 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 8/209 (3%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K DR+I+ G + +T + P+ R +L GI+ Sbjct: 7 FAVVDLETTGTSVKDGDRMIQFGCALVRHGKII-QTISQMINPD-RSVPQTIQRLTGISP 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L P F + + ++AHN FD F+NAE +RI L I Sbjct: 65 ERLVAAPYFDEVAPALHQVLTK--TVFVAHNVNFDYPFLNAEFERIGLPKLQLEAIDTVE 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-MVGGSQINFGFK 186 S L+ L I H + H A D+ + + +++ + + Sbjct: 123 LAQVLLPEISSFRLSDL--TTHFAIQHDNPHQADSDATSTAKLLLQLKARFQALPTPTQQ 180 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 R ++T + ++ + Sbjct: 181 ALIQRHDGFIRETGDYLKMIASPPRPLKK 209 >gi|315268227|gb|ADT95080.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS678] Length = 201 Score = 56.5 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 57/171 (33%), Gaps = 11/171 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTGL+ ++EI +E T + P EA +HGIT+E Sbjct: 33 VILDTETTGLEW-GCEVVEISIIEARTGLILMNTLVRPINP----IPAEATAIHGITNEM 87 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P F I + + + +A ++ L+ Sbjct: 88 VADAPLFFDIAISVAQILSGRTVIAYNSAFDKKMLCSSAAYSSGEPPYVNSDFQCAMLAY 147 Query: 130 ARRKHPSSR------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 A+ K + + + H AL D L ++ +KM Sbjct: 148 AQYKGDWNHGHGDFKWHSLVNAAKQQGIALEGTAHRALYDCQLTRELILKM 198 >gi|58337449|ref|YP_194034.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM] gi|58254766|gb|AAV43003.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM] Length = 927 Score = 56.5 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 79/209 (37%), Gaps = 7/209 (3%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + II+ G + + +T+ + P+ R+ + L GI++ Sbjct: 10 FAVVDLETTGTQRENGHHIIQFGCAIIKNMKVV-KTYSFLINPH-REIPQSVVNLTGISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIID 125 E ++ + F + + ++AHN FD+ F+N EL + D L ++ Sbjct: 68 EDVQKQKDFDYYAPKIVSILQD--TVFVAHNVDFDLPFLNYELTQHGYDALTNKAIDTVE 125 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 IA PS + + + H++ A + LL ++ K+ Sbjct: 126 LAKIAFPTLPSYKLGDLTSQLKIKHLNPHKADSDAYGTAVLLIEIIKKLTNLPQATLNTL 185 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFT 214 + ++ + I+ R + Sbjct: 186 SSLSHGLIRDTSWIITTIADDLRKEKRPL 214 >gi|170724006|ref|YP_001751694.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida W619] gi|169762009|gb|ACA75325.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida W619] Length = 236 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCP 50 R +V D+ET+GL+ D+++ IGAV + D + ++ F+ P Sbjct: 40 RWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFSQQFERTLHRP 84 >gi|46402125|ref|YP_006619.1| Gp39 [Klebsiella phage phiKO2] gi|40218269|gb|AAR83055.1| Gp39 [Klebsiella phage phiKO2] Length = 202 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 10/146 (6%) Query: 1 MIRKNKMR--KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M+ N +R ++ D ETTGL D IIEI + + + P R PE Sbjct: 11 MMMANWLRSDHVIIDTETTGL-MDFDEIIEITIINMRGEIL----LNSLVKP-SRPIPPE 64 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A K++ IT+E + D P++S +F + +W+A N+ FD + + Sbjct: 65 ATKINHITNEMVADAPTWSDVFPAVLKIIWK--YKWLAWNSSFDARLMVQSCLKTWFFDD 122 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSL 144 I ++ +A + Sbjct: 123 LKPHRITSIIMAIETRHIDAKAVYDQ 148 >gi|326794723|ref|YP_004312543.1| ribonuclease T [Marinomonas mediterranea MMB-1] gi|326545487|gb|ADZ90707.1| Ribonuclease T [Marinomonas mediterranea MMB-1] Length = 224 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 76/208 (36%), Gaps = 13/208 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + K D ++EI A L + T + + P G AL G Sbjct: 16 VVIDVETAGFNEKTDALLEIAASILRMDENGDLYIHETLEYIVQPFEGANLEKAALDFTG 75 Query: 65 ITDEFLKDKPSFSSIFSEFW--------DFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I S + A + HN+ FD GF+NA ++R + Sbjct: 76 IDPFDPDRNDMPESEALTQMLSKVRKELKSVGCKRAILVGHNSSFDHGFLNAAIERCSIK 135 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L C+ I S+ H A D+ ++++ +++ Sbjct: 136 RNPFHPFSSFDTASLAGLAYGQTVLAKACEAANIPFSNSQAHSAKYDTEKTAELFCEIVN 195 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNIS 204 Q+ + +E + E +++ N + Sbjct: 196 RWKQMGGWSQFSESQESAETMESLFNSN 223 >gi|227904085|ref|ZP_04021890.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796] gi|227868104|gb|EEJ75525.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796] Length = 927 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 79/209 (37%), Gaps = 7/209 (3%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + II+ G + + +T+ + P+ R+ + L GI++ Sbjct: 10 FAVVDLETTGTQRENGHHIIQFGCAIIKNMKVV-KTYSFLINPH-REIPQSVVNLTGISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIID 125 E ++ + F + + ++AHN FD+ F+N EL + D L ++ Sbjct: 68 EDVQKQKDFDYYAPKIVSILQD--TVFVAHNVDFDLPFLNYELTQHGYDALTNKAIDTVE 125 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 IA PS + + + H++ A + LL ++ K+ Sbjct: 126 LAKIAFPTLPSYKLGDLTSQLKIKHLNPHKADSDAYGTAVLLIEIIKKLTNLPQATLNTL 185 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFT 214 + ++ + I+ R + Sbjct: 186 SSLSHGLIRDTSWIITTIADDLRKEKRPL 214 >gi|303240841|ref|ZP_07327353.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio cellulolyticus CD2] gi|302591569|gb|EFL61305.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio cellulolyticus CD2] Length = 182 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 8/101 (7%) Query: 7 MRKIVFDIETTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEAL 60 M I+FD+E T +ND IIEIGAV+L D + TF F+ P S + Sbjct: 1 MNYIIFDLEAT--CWENDKSKTSEIIEIGAVKLNDRLEVVDTFSKFIKPAIYPVLSDFCI 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 +L I + + F ++ EF ++ + E + F Sbjct: 59 RLTSIEQKDVDTADIFKNVMVEFENWITSSDTEVALCSWGF 99 >gi|163937886|ref|YP_001642772.1| exonuclease RNase T and DNA polymerase III [Bacillus weihenstephanensis KBAB4] gi|163865741|gb|ABY46797.1| Exonuclease RNase T and DNA polymerase III [Bacillus weihenstephanensis KBAB4] Length = 271 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 65/201 (32%), Gaps = 13/201 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEF 69 VFD+ETTGLD KN++++EI A+ + R + + G+K + + D Sbjct: 16 VFDLETTGLDYKNEQVVEIAAIRTDLEQELGRM-HILVKLNEGKKLPDFLVDNTDLRDYM 74 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L + F N+ + + + K + P + T SI Sbjct: 75 LVNGMVEHQALINLMAFMG---------NSIVVAHYAPFDFAYLFKALIAPELFLCTRSI 125 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 R P L +R G+ H A+ D V + + + Sbjct: 126 ERLLTPDKSASLAPTAERRGVK--LEGAHRAMNDIEATIGVLKSQLSEIKERGIKRSVVQ 183 Query: 190 DRFFKEEKKTVPNISLLKRDK 210 + ++ + K Sbjct: 184 NMIVDSPERPNKFTPRHAKVK 204 >gi|314936410|ref|ZP_07843757.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus hominis subsp. hominis C80] gi|313655029|gb|EFS18774.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus hominis subsp. hominis C80] Length = 905 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 2/163 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG ++D II+IG + D + T+ + + P L I + Sbjct: 6 FAVVDLETTGNQLEHDEIIQIGITFVRDNKISG-TYHSMIR-TDLEIPPFIQALTSIEET 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I + ++ + + + E I+ P ++ Sbjct: 64 MLEQAPYFHEIADDIYEQLKDCIFVAHNVDFDLNFIKKAFEKSNIHFKPKKVLDTLELFK 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 IA S + + +T +HR+ A ++L+ + Sbjct: 124 IAFPTEKSYQLSELANAHNIPLTNAHRADEDATTTAYLMIKAF 166 >gi|326789827|ref|YP_004307648.1| exonuclease RNase T and DNA polymerase III [Clostridium lentocellum DSM 5427] gi|326540591|gb|ADZ82450.1| Exonuclease RNase T and DNA polymerase III [Clostridium lentocellum DSM 5427] Length = 305 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 64/178 (35%), Gaps = 9/178 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M +V D ET +S +G V++ + + +F + P L GIT Sbjct: 1 MNYVVIDFET--ANSSRSSACSLGMVKVHEGNIV-DSFYSLINPED-DFDLFNTSLTGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + P+F+ ++ + F ++ + + + P+ T Sbjct: 57 QDMVCNSPTFNELWPDILSFISDHMIVA---HYASFDLSVLRNVLLKYNIPIPTLSYCCT 113 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 +++++ P+ N Y + H A D+H + + + + + +F Sbjct: 114 RNLSKKTFPNLINYRLDTVASY--LDIEFNHHHAFEDAHATAVLLNHIFIQNTTSSFE 169 >gi|171743164|ref|ZP_02918971.1| hypothetical protein BIFDEN_02291 [Bifidobacterium dentium ATCC 27678] gi|283455845|ref|YP_003360409.1| DNA polymerase III, subunit epsilon [Bifidobacterium dentium Bd1] gi|171278778|gb|EDT46439.1| hypothetical protein BIFDEN_02291 [Bifidobacterium dentium ATCC 27678] gi|283102479|gb|ADB09585.1| DNA polymerase III, epsilon subunit [Bifidobacterium dentium Bd1] Length = 212 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 8/178 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGIT 66 ++ D ETTGL + IIEIGA+ + ++ R F+ + P R +L GI+ Sbjct: 25 YVMLDTETTGLHPEEGATIIEIGALLVTPGNENARPRFEQLVDPQ-RPLPEFISRLTGIS 83 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPS 121 D L+DKP+ + F + ++ IAHNA+FD+GF++A + + D + Sbjct: 84 DGMLRDKPTADAAMLRFHQWLDDVWPTGKPLTIIAHNAEFDIGFLDAAERAHDPDANEFD 143 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + + I +H AL D+ +Y + S Sbjct: 144 CRWLCTKEMSWELNPRKRHHRVSDLIVDYRIGDVEEHRALSDAIQEQMIYRALCREAS 201 >gi|27468061|ref|NP_764698.1| dinG protein [Staphylococcus epidermidis ATCC 12228] gi|57866955|ref|YP_188602.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus epidermidis RP62A] gi|251810883|ref|ZP_04825356.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis BCM-HMP0060] gi|282876111|ref|ZP_06284978.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus epidermidis SK135] gi|293366576|ref|ZP_06613253.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|81819394|sp|Q5HP88|DING_STAEQ RecName: Full=Probable ATP-dependent helicase dinG homolog gi|81842831|sp|Q8CP71|DING_STAES RecName: Full=Probable ATP-dependent helicase dinG homolog gi|27315606|gb|AAO04740.1|AE016747_237 dinG protein [Staphylococcus epidermidis ATCC 12228] gi|57637613|gb|AAW54401.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus epidermidis RP62A] gi|251805563|gb|EES58220.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis BCM-HMP0060] gi|281295136|gb|EFA87663.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus epidermidis SK135] gi|291319345|gb|EFE59714.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|329725381|gb|EGG61864.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus epidermidis VCU144] gi|329735254|gb|EGG71546.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus epidermidis VCU045] gi|329737465|gb|EGG73719.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus epidermidis VCU028] Length = 902 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 6/178 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + T+ + + P L I +E Sbjct: 6 FAVVDLETTGNQLDYDEIIQIGITFVRQNQVI-DTYHSMIR-TDLEIPPFIQALTSIEEE 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ + + + + ++AHN FD+ FI ++ N + Sbjct: 64 MLVQAPYFNEVADDIYQLIKD--CVFVAHNISFDLNFIKKAFEKCNIQFKPKRVMDTLEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++L + + I + H A D+ + + IK Q++ + Sbjct: 122 FKIAFPTDKSYQLSALAESHHIP--LNNAHRADEDATTTAKLMIKAFEKFEQLHLDTQ 177 >gi|81428950|ref|YP_395950.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus sakei subsp. sakei 23K] gi|78610592|emb|CAI55643.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus sakei subsp. sakei 23K] Length = 178 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 7/167 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + + D I V + + ++ F + P S ++HGI Sbjct: 1 MNFVAMDFET--ANGQRDSACSIALVVVRNDQIVDQ-FYTLIKPET-YFSSRNSQIHGIY 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ + P F F +AHNA FD+G + + LQ + + Sbjct: 57 EDDVAQAPKF-DQVWPHIAPFFTPQKLVVAHNATFDIGVLRSTLQHYDIPEPHYLALDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + R + LN+LC + I + H AL DS + + IK Sbjct: 116 TTSRRLYPQFKNHKLNTLC--TNLEIPLENHHNALADSIACAKILIK 160 >gi|333030485|ref|ZP_08458546.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis DSM 18011] gi|332741082|gb|EGJ71564.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis DSM 18011] Length = 164 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 5/150 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ET ++ I +G V + + +R F + P + ++HG+TD Sbjct: 3 NFVAIDFET--ANANRSSICSVGIVIVKNGEVVDR-FYQLIRPIPNFYTYWNTRVHGLTD 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 P F ++S +AHN+ FD + + + Sbjct: 60 YDTAMAPRFPEVWSSIAPKLQG--LPLVAHNSAFDESCLKKAFEAYQLIYPNYIFYCTLK 117 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK 157 + + + L ++ G ++ + Sbjct: 118 ASRKSLPRLINHQLGTVASCCGYSLQNHHN 147 >gi|317011686|gb|ADU85433.1| DNA polymerase III subunit epsilon [Helicobacter pylori SouthAfrica7] Length = 287 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + L GI E Sbjct: 75 FIDLETTGSCPIKHEILEIGAVQVSGGKIINR-FETLVK--VKSVPDYISDLTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 132 LNAPSVYEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177 >gi|281424647|ref|ZP_06255560.1| putative ATP-dependent DNA helicase [Prevotella oris F0302] gi|281401235|gb|EFB32066.1| putative ATP-dependent DNA helicase [Prevotella oris F0302] Length = 906 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 21/30 (70%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 +FD ETTGLD +D I++I AV++ + + Sbjct: 509 IFDTETTGLDVFHDDILQIAAVKVRNGAVV 538 >gi|295135069|ref|YP_003585745.1| exonuclease family protein [Zunongwangia profunda SM-A87] gi|294983084|gb|ADF53549.1| exonuclease family protein [Zunongwangia profunda SM-A87] Length = 457 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 88/236 (37%), Gaps = 12/236 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + ++ F + P R P + L GI +E Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKFDGEKVVDQ-FISLINPE-RPIQPFVVGLTGINNE 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ P F + + + +AHNAKFD + E +R+ + + + T+ Sbjct: 60 MLRNAPKFYEVAKRIVE--ITTDCIIVAHNAKFDYRILRTEFKRLGFE--FQRKSLCTVE 115 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++++ P + + I +H A D+ ++ ++ ++ + Sbjct: 116 LSKKLIPDMPSYSL-GKLVRALGIPLSDRHRANGDAQATVKLFKMLLAKDTKKDILKDNV 174 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 ++ + I + E+ + I +GK+ + I+ + Sbjct: 175 RQEPKRQLDSKLVYILDDLPAITGIYYLHDEDGE-----IIYIGKSKNIKKRINQH 225 >gi|294140554|ref|YP_003556532.1| ribonuclease T [Shewanella violacea DSS12] gi|293327023|dbj|BAJ01754.1| ribonuclease T [Shewanella violacea DSS12] Length = 223 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 72/204 (35%), Gaps = 13/204 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIG--AVELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S+ D ++EI +++ D ++T + P G P+AL +G Sbjct: 20 VVIDVETAGFNSQTDALLEIAVTMLKMDDEGILSLDKTLHYHIEPFEGANLEPDALAFNG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + +AHNA FD GF++ ++R Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKEVKKAQKAVGCHRSIIVAHNAAFDHGFVSKAIERCALK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A L C GI + H AL D+ ++++ ++ Sbjct: 140 RTPFHPFATFDTAALSGLALGHTVLAKACSIAGIDFDNNEAHSALYDTERTAELFCHIVN 199 Query: 177 GGSQINFGFKTNEDRFFKEEKKTV 200 + + ++T Sbjct: 200 KWKALGGWPLAVNHDIDEASEETK 223 >gi|228476066|ref|ZP_04060774.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus hominis SK119] gi|228269889|gb|EEK11369.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus hominis SK119] Length = 905 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 2/163 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG ++D II+IG + D + T+ + + P L I + Sbjct: 6 FAVVDLETTGNQLEHDEIIQIGITFVRDNKISG-TYHSMIR-TDLEIPPFIQALTSIEET 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I + ++ + + + E I+ P ++ Sbjct: 64 MLEQAPYFHEIADDIYEQLKDCIFVAHNVDFDLNFIKKAFEKSNIHFKPKKVLDTLELFK 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 IA S + + +T +HR+ A ++L+ + Sbjct: 124 IAFPTEKSYQLSELANAHNIPLTNAHRADEDATTTAYLMIKAF 166 >gi|261339587|ref|ZP_05967445.1| ribonuclease T [Enterobacter cancerogenus ATCC 35316] gi|288318408|gb|EFC57346.1| ribonuclease T [Enterobacter cancerogenus ATCC 35316] Length = 216 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L T + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLTPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + + A +AHNA FD F A +R + Sbjct: 80 IDPKNPLRGAVSEYDALHAIFKMVRKGMKDNDCSRAIMVAHNATFDHSFTMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C GI H AL D+ ++++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACITAGIEFDGTQAHSALYDTERTAELFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|157374989|ref|YP_001473589.1| ribonuclease T [Shewanella sediminis HAW-EB3] gi|157317363|gb|ABV36461.1| ribonuclease T [Shewanella sediminis HAW-EB3] Length = 223 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 68/204 (33%), Gaps = 13/204 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIG--AVELLDYSKTN--RTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI +++ D +T + P G PEAL G Sbjct: 20 VVIDVETAGFNAQTDALLEIAVTMLKMDDEGVLGLDKTLHYHIEPFEGANLEPEALAFTG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + +AHNA FD GF++ ++R Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVSKAVERNGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L C GI + H AL D+ ++++ ++ Sbjct: 140 RTPFHPFATFDTATLAGLAIGHTVLAKACSIAGIPFDNNEAHSALYDTERTAELFCLIVN 199 Query: 177 GGSQINFGFKTNEDRFFKEEKKTV 200 + D E + Sbjct: 200 RWKALGGWPLATPDESTLETESEA 223 >gi|292669904|ref|ZP_06603330.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648701|gb|EFF66673.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 219 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 73/219 (33%), Gaps = 17/219 (7%) Query: 7 MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M+ IV D+E + + N IIEIGAV L + + FQ ++CP Sbjct: 1 MKHIVVDLEMNPVSKEYREVRRKLNGEIIEIGAVRLNENYEQEDEFQCYVCPEYGMVKKH 60 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA---KFDVGFINAELQRINK 115 +L GIT E ++ P+FS F F + + + + K +L + Sbjct: 61 ITELTGITQEKVEGHPAFSDSFHSFVAWIGAAETKIYSWSMSDIKQLRKECRLKLPDFDV 120 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + LD + R + L G H AL D+ S V M Sbjct: 121 NWLDTRWVDLQQEFDDRLGLHNSLALKHALGAMGRRFEGSQ-HSALADAVNTSAVLALMQ 179 Query: 176 VGGS-----QINFGFKTNEDRFFKEEKKTVPNISLLKRD 209 + + P++ LK++ Sbjct: 180 DDAKFRETMRPVLEILAPSEGLSNSIGDLFPDLEKLKKN 218 >gi|183598873|ref|ZP_02960366.1| hypothetical protein PROSTU_02308 [Providencia stuartii ATCC 25827] gi|188021081|gb|EDU59121.1| hypothetical protein PROSTU_02308 [Providencia stuartii ATCC 25827] Length = 213 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 72/194 (37%), Gaps = 13/194 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L D + + T + P G P AL G Sbjct: 20 VVIDVETGGFNAKTDGLLEIAAITLKMDKDGWLSPDETLHFHVEPFEGANLEPAALAFTG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + + A +AHNA FD F+ +R Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKMVRKGMKATDCNRAIIVAHNATFDHSFVMNAAERAGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI + HGAL D++ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVFGQTILAKACVAAGIPFDGKQAHGALYDTNRTALLFCELVN 199 Query: 177 GGSQINFGFKTNED 190 ++ ++ Sbjct: 200 KWKKLGGWPPAEQE 213 >gi|113970710|ref|YP_734503.1| ribonuclease T [Shewanella sp. MR-4] gi|114047939|ref|YP_738489.1| ribonuclease T [Shewanella sp. MR-7] gi|122944589|sp|Q0HTX3|RNT_SHESR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|123029558|sp|Q0HHM1|RNT_SHESM RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|113885394|gb|ABI39446.1| RNAse T [Shewanella sp. MR-4] gi|113889381|gb|ABI43432.1| RNAse T [Shewanella sp. MR-7] Length = 222 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 70/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S+ D ++EI +++ D ++T + P G PEAL +G Sbjct: 20 VVIDVETAGFNSQTDALLEIAVTLLKMDDEGLLGIDKTLHFNIEPFEGANLEPEALAFNG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + +AHNA FD GF++ ++R + Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L C GI ++ H AL D+ ++++ ++ Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCYIVN 199 Query: 177 GGSQIN 182 + Sbjct: 200 RWKHLG 205 >gi|188533941|ref|YP_001907738.1| ribonuclease T [Erwinia tasmaniensis Et1/99] gi|188028983|emb|CAO96849.1| Ribonuclease T [Erwinia tasmaniensis Et1/99] Length = 218 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D+K + ++EI AV ++ + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFDAKTNALLEIAAVTLKMDNDGWLVKDETLHFHVEPFPGSILLPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A +AHNA FD+ F+NA +R + Sbjct: 80 IDPANPLRGAVSEYESLHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L C G+T H AL D+ +D++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLVLGQTVLAKACHAAGMTFDSSQAHSALYDTLQTADLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|149371985|ref|ZP_01891304.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49] gi|149355125|gb|EDM43686.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49] Length = 1476 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 69/237 (29%), Gaps = 22/237 (9%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + R I+I + + P G + Sbjct: 2 YLIFDTETTGLPRNWNAPLSDSDNWPRCIQIAWQLHDEMGNVIEHQDYLVQPEGFNIPFD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI---------NAE 109 A K+HGI+ E K + + + N FD+ + Sbjct: 62 AEKIHGISTELAAAKGISLEDMMAKFQEVLGKTKFLVGQNVGFDLNIMGAEFLRLGLENP 121 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 L + IA ++ + + ++ H A D + Sbjct: 122 LPDMPLLDTCTEATAQLCQIAGGRYGKFKLPTLTELHQFLFNSPFGEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE---ELDE 223 + +++ D F K+ I ++ + +++ EL++ Sbjct: 182 CFFELIRRQVFKAEELGVESDYFENFSKENPAPIEVIGLKHINLKKASEKIRRELEK 238 >gi|330952959|gb|EGH53219.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae Cit 7] Length = 203 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 77/207 (37%), Gaps = 7/207 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 3 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 61 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRT--REQSFACS 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +ARR P + N RY H A+ D+ + +++ + Q + Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTAYLTNELRQTHGISA 176 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLF 213 + +K I+ + + Sbjct: 177 ISHQMLCSLQKVPAAKINETLKRQRGV 203 >gi|319400807|gb|EFV89026.1| putative dnaQ family exonuclease/DinG family helicase [Staphylococcus epidermidis FRI909] Length = 902 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 6/178 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + T+ + + P L I +E Sbjct: 6 FAVVDLETTGNQLDYDEIIQIGITFVRQNQVI-DTYHSMIR-TDLEIPPFIQALTSIEEE 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ + + + + ++AHN FD+ FI ++ N + Sbjct: 64 MLVQAPYFNEVADDIYQLIKD--CVFVAHNISFDLNFIKKAFEKCNIQFKPKRVMDTLEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++L + + I + H A D+ + + IK Q++ + Sbjct: 122 FKIAFPTDKSYQLSALAESHHIP--LNNAHRADEDATTTAKLMIKAFEKFEQLHLDTQ 177 >gi|86157195|ref|YP_463980.1| exonuclease [Anaeromyxobacter dehalogenans 2CP-C] gi|85773706|gb|ABC80543.1| Exonuclease [Anaeromyxobacter dehalogenans 2CP-C] Length = 207 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 67/179 (37%), Gaps = 14/179 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALKLHGITD 67 D+ET GLD + D I+ +G V + + +F + P P +++ H + Sbjct: 21 ALDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFSTLIRPEAAAAAIDPGSIRAHQLVP 80 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS------ 121 + PS S+ ++ + + H A DV F+ +R + +P Sbjct: 81 HDVATAPSLDSVLADV--DLRAREGALLVHQASLDVAFLKRAYRRCGRRWPEPPVVDTVA 138 Query: 122 ---RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + PS DLN L R + +H AL D+ +++++ + Sbjct: 139 LLIKAAKRQRFVNPDAPSMEPDLNLLAARRQRGLPDYGQHDALTDAVATAELFLVLRRQ 197 >gi|328480154|gb|EGF49106.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus rhamnosus MTCC 5462] Length = 106 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 3/94 (3%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K DR+I+ G + +T + P+ R +L GI+ Sbjct: 7 FAVVDLETTGTSVKDGDRMIQFGCALVRHGKII-QTISQMINPD-RSVPQTIQRLTGISP 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 E L P F + + N + Sbjct: 65 ERLVAAPYFDEVAPALHQVLTKTVFVAHNVNFDY 98 >gi|326801307|ref|YP_004319126.1| DNA polymerase III subunit alpha [Sphingobacterium sp. 21] gi|326552071|gb|ADZ80456.1| DNA polymerase III, alpha subunit [Sphingobacterium sp. 21] Length = 1493 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 70/230 (30%), Gaps = 19/230 (8%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + D R ++I D + + P+G + Sbjct: 2 YLIFDTETTGLPKRWDAPITDTDNWPRCVQIAWQLHDDMGRLIEHQDYLVKPDGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A ++HGI+ E ++ E ++ ++ + N FD+ + E R+ Sbjct: 62 AERVHGISTELALEQGIDLVEVLEKFNIALDKAKFIVGQNIGFDINIMGCEFHRMGIATT 121 Query: 119 DPSRIIDTLSIARRKHP---------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + + + Y + H A D + Sbjct: 122 MGEKAVLDTCTEVTANLLQLPGGRGGKFKLPNLTELHAYLFGVPFAEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 +++++ + ED F I+ + + Sbjct: 182 CFLELIKKNIFTAAELQVQEDYFEVFRTNNPDPIAAVGLQHVNLKAASDA 231 >gi|308185320|ref|YP_003929453.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180] gi|308061240|gb|ADO03136.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180] Length = 287 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 75 FVDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 132 LNAPSTHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177 >gi|256424475|ref|YP_003125128.1| DNA polymerase III subunit epsilon [Chitinophaga pinensis DSM 2588] gi|256039383|gb|ACU62927.1| DNA polymerase III, epsilon subunit [Chitinophaga pinensis DSM 2588] Length = 456 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 4/101 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + + I EI A+ + D + ++ + P G L GITDE Sbjct: 2 YAIVDIETTGGHASANGITEI-AIYIYDGRNIVQQYETLINP-GVPIPRYIQSLTGITDE 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 + + P+F + + + ++ ++AHN FD FI Sbjct: 60 MVANAPAFDEVAGDIFALLHD--KIFVAHNVNFDYSFIQYH 98 >gi|41406411|ref|NP_959247.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp. paratuberculosis K-10] gi|254773395|ref|ZP_05214911.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp. avium ATCC 25291] gi|41394760|gb|AAS02630.1| DnaQ [Mycobacterium avium subsp. paratuberculosis K-10] Length = 329 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 76/207 (36%), Gaps = 11/207 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L K ++ L P P +HG+T L Sbjct: 19 VIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPG---VDPGPTHVHGLTAAML 75 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D+P F+ I + + +AHN FD F+ AE + + + + Sbjct: 76 EDQPQFADIAGDVVEVLRG--RTLVAHNVAFDYAFLAAEAELAGIELPVDTVMCTVELAR 133 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R L +L +G+T H A D+ +L+ V + + + + Sbjct: 134 RLDLGIDNLRLETLAAHWGVTQQRP--HDAFDDAMVLTGVLASALQRARERDIWLPVHPV 191 Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRIT 217 + V + L +PL + Sbjct: 192 TRRRWPNGRVTHDEL----RPLKVLAS 214 >gi|299142339|ref|ZP_07035471.1| ATP-dependent DNA helicase [Prevotella oris C735] gi|298576061|gb|EFI47935.1| ATP-dependent DNA helicase [Prevotella oris C735] Length = 906 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 21/30 (70%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 +FD ETTGLD +D I++I AV++ + + Sbjct: 509 IFDTETTGLDVFHDDILQIAAVKVRNGAVV 538 >gi|217033856|ref|ZP_03439281.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10] gi|216943754|gb|EEC23197.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10] Length = 287 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 132 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177 >gi|312868001|ref|ZP_07728205.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parasanguinis F0405] gi|311096405|gb|EFQ54645.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parasanguinis F0405] Length = 1464 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GIT+E Sbjct: 426 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVI-EEFDEFIDP-GHPLSAFTTQLTGITNE 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + EF F +AHNA FDVGF+NA +R + I Sbjct: 484 HVRGAKPLVQVLKEFQAFCEG--TVLVAHNATFDVGFMNANYERHGLPKITQPVIDTLEF 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 542 ARNLYPDFKRHGLGPLTKRFGVGLEH--HHMANYDAEATGRLL 582 >gi|295135414|ref|YP_003586090.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87] gi|294983429|gb|ADF53894.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87] Length = 282 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 80/214 (37%), Gaps = 24/214 (11%) Query: 1 MIRKNKMRKIVFDIETT-GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 MI +VFD ET G + +G VE + K R F + P +P A Sbjct: 1 MIED----FVVFDFETARGKNP-----CSLGMVEYKNGKK-YREFYELINPEVAYFNPFA 50 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPL 118 +++HGIT E ++ + +FS ++ F +AHNAKFD + + P Sbjct: 51 IQIHGITYEDVQHERNFSELWDAMLPFIEG--KTLVAHNAKFDNAVLLYSLQRYGIDVPP 108 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---- 174 S + PS + + + H AL D+ + ++++K+ Sbjct: 109 YASFCTLQRARRLVALPSYKLSSLA----NFFEVPQLRHHNALEDAFVCGELFLKLNRVE 164 Query: 175 --MVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206 + + F ++ + E++ I Sbjct: 165 EELKLQEEHGMDFPSDYLDWIAEKQGQNVQIRRK 198 >gi|283470668|emb|CAQ49879.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus aureus subsp. aureus ST398] Length = 897 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNHII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D + ++AHN FD+ FI + N I Sbjct: 64 MLQQAPYFNQVAEEIYDKIKD--CIFVAHNVDFDLNFIKKAFKNCNIQYRPKKVIDTLEI 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L+ L + +GIT + H A D+ + + I ++ Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175 >gi|242242736|ref|ZP_04797181.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis W23144] gi|242233872|gb|EES36184.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis W23144] Length = 902 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 6/178 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + T+ + + P L I +E Sbjct: 6 FAVVDLETTGNQLDYDEIIQIGITFVRQNQVI-DTYHSMIR-TDLEIPPFIQALTSIEEE 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ + + + + ++AHN FD+ FI ++ N + Sbjct: 64 MLVQAPYFNEVADDIYQLIKD--CVFVAHNISFDLNFIKKAFEKCNIQFKPKRVMDTLEL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++L + + I + H A D+ + + IK Q++ + Sbjct: 122 FKIAFPTDKSYQLSALAESHHIP--LNNAHRADEDATTTAKLMIKAFEKFEQLHLDTQ 177 >gi|15612503|ref|NP_224156.1| DNA polymerase III subunit epsilon [Helicobacter pylori J99] gi|4156060|gb|AAD07016.1| DNA POLYMERASE III [Helicobacter pylori J99] Length = 323 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 111 FVDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 168 LNAPSAHEALQEL--RIFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 213 >gi|86141808|ref|ZP_01060332.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis MED217] gi|85831371|gb|EAQ49827.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis MED217] Length = 1460 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 72/259 (27%), Gaps = 35/259 (13%) Query: 9 KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL D R I+I D + P+G + Sbjct: 2 YLIFDTETTGLPKNWSAPITDSDNWPRAIQIAWQLHDDMGNCIEHEDYLIRPDGFDIPFD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP- 117 A ++HGI+ E + + E+ + N FDV + AE R++ Sbjct: 62 AERIHGISTELAQRDGLPLGEVLGKFKAALERTKFVVGQNVGFDVNIMGAEFHRLDVTNQ 121 Query: 118 --------LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 I + + + +Y H A D + Sbjct: 122 LQELPVLDTCTETTAQLCQIPGGRGGKFKLPTLTELHQYLFNQPFAEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI------------- 216 + +++ F + I + + Sbjct: 182 CFFELVRRRIFTQEELDVPAGYFENFSEANPQPIEFIGLKHINLKKASDEIRKELQKADQ 241 Query: 217 ---TKEELDEHDKTIQTLG 232 +KEE+ E+ + + + Sbjct: 242 ADISKEEIKENKEQLAKVD 260 >gi|117924351|ref|YP_864968.1| exonuclease, RNase T and DNA polymerase III [Magnetococcus sp. MC-1] gi|117608107|gb|ABK43562.1| Exonuclease, RNase T and DNA polymerase III [Magnetococcus sp. MC-1] Length = 230 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 48/169 (28%), Gaps = 3/169 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGIT 66 + + D+ETTGLD I+ +G V + + + P G + A+ Sbjct: 43 KFLALDLETTGLDPNKSEILSVGFVPVYNGRVVLSGCAHYLVQPEGAISHASAVVHGITD 102 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D S + + + + + + Sbjct: 103 DHAEAYGEPLSVVLPRVLKALKGHVLLAHHCPIELNFIRKACQRLYGEMPLIPAVDTLVI 162 Query: 127 --LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + RR L R + + H AL+D+ ++++ Sbjct: 163 ERQIMDRRSGTYEPGALRLFTARTRYNLPRYAAHDALMDAIACGELFLA 211 >gi|217032955|ref|ZP_03438429.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128] gi|216945324|gb|EEC23998.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128] Length = 287 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 75 FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 132 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177 >gi|167581005|ref|ZP_02373879.1| possible DNA polymerase/helicase [Burkholderia thailandensis TXDOH] Length = 379 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EIG V + + T+ + P + P +L GITD + Sbjct: 17 FVDLETTGGSAVEHRITEIGVVVVNANHVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P+F+ I + + ++AHNA FD GF Sbjct: 74 RGAPTFADIAPALLERLDG--KLFVAHNASFDRGF 106 >gi|83720800|ref|YP_442134.1| DNA polymerase/helicase [Burkholderia thailandensis E264] gi|167619083|ref|ZP_02387714.1| possible DNA polymerase/helicase [Burkholderia thailandensis Bt4] gi|257138320|ref|ZP_05586582.1| DNA polymerase/helicase [Burkholderia thailandensis E264] gi|83654625|gb|ABC38688.1| possible DNA polymerase/helicase [Burkholderia thailandensis E264] Length = 379 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EIG V + + T+ + P + P +L GITD + Sbjct: 17 FVDLETTGGSAVEHRITEIGVVVVNANHVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P+F+ I + + ++AHNA FD GF Sbjct: 74 RGAPTFADIAPALLERLDG--KLFVAHNASFDRGF 106 >gi|33861178|ref|NP_892739.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639910|emb|CAE19080.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 270 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 69/215 (32%), Gaps = 6/215 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++ D ETTGLD D IIE+G + +K+ + FL P S + Sbjct: 48 NILILDTETTGLDENKDEIIEVGCILFNVNTKSVLSQVSFLFP----VSSNEAEHVNGIS 103 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + F+ + + +AHN +FD + + S Sbjct: 104 AEVTNIKQPWEDGLNFFLKLVDCSDLIVAHNVEFDKKWFGKGRLPKLEKKWICSLEDINW 163 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL--SDVYIKMMVGGSQINFGF 185 S + +L + HR+ S + + +++ ++ F + Sbjct: 164 SFQKNLKNRPSVTDLALSFSIPVWSLHRALSDCFYISEVFKKCENLEELLCKATEPRFLY 223 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 K + K + + ++T EE Sbjct: 224 KALVSYEERSLAKKAGFLWNNPKQGAWAKKLTVEE 258 >gi|269104806|ref|ZP_06157502.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268161446|gb|EEZ39943.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 249 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + D+ETTGLDS+ D+II +G V LD ++ + P+ N + Sbjct: 59 FVALDLETTGLDSQQDQIISVGLVPFTLDRIYCRQSAHWVVNPHRLLNEESVVIHG 114 >gi|327183531|gb|AEA31978.1| hypothetical protein LAB52_05120 [Lactobacillus amylovorus GRL 1118] Length = 298 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 64/175 (36%), Gaps = 6/175 (3%) Query: 1 MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 MI+ I D+ETTGL++ +II IGA++ + F + N Sbjct: 121 MIKGAIKNDFIAVDLETTGLNTSRSKIISIGAIK-ENLKGEEEQFYRLIKINEAIPEKIT 179 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + + + +EF F + +N FD F+ I + L Sbjct: 180 ELTGLTSKVLNERGVTLEQALNEFRKFVGSEMIV--GYNLSFDNNFLLKAYLSIGQRALV 237 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 S + + DL ++ K YGI + ++H AL D+ + ++ Sbjct: 238 NSMKDLMGIVKEKDIFLDNYDLETVLKEYGIK--NDNRHNALSDARATFKLAKEL 290 >gi|323464450|gb|ADX76603.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus pseudintermedius ED99] Length = 900 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 4/109 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG + D II+IG + + + + L I +E Sbjct: 7 YAVVDLETTGNQADYDEIIQIGITFVRNNQII-DHYHSMIK-TDLTIPTFIQALTSIEEE 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 L P F + + + + ++AHN FD+ F+ ++ + Sbjct: 65 MLNQAPYFKEVAHKIYSKIKD--CIFVAHNVNFDLNFLKRSFKKCHIHY 111 >gi|294636395|ref|ZP_06714781.1| ribonuclease T [Edwardsiella tarda ATCC 23685] gi|291090340|gb|EFE22901.1| ribonuclease T [Edwardsiella tarda ATCC 23685] Length = 221 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D+ + ++EI AV L + +T++ + P G SPEAL +G Sbjct: 20 VVIDVETAGFDANRNALLEIAAVTLRMNDAGWLETDQCLHFHIEPFEGAILSPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A +AHNA FD F+ A +R Sbjct: 80 IDPHNPLRGAVSEYEALHAIFKVVRKGIKDQECNRAVIVAHNAHFDHSFLMAAAERAKLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C I H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACISAEIPFDSSQAHSALYDTQQTALLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|94676709|ref|YP_588563.1| ribonuclease T [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|166228561|sp|Q1LU01|RNT_BAUCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|94219859|gb|ABF14018.1| ribonuclease T [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 218 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 13/198 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI A+ L + KT++T + P G PEAL +G Sbjct: 20 VVIDVETAGFNSGTDALLEIAAITLQMDHHGWLKTHKTLHFNIEPFPGSILQPEALIFNG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + +I + + A +AHNA FD F+ A R Sbjct: 80 IDPDNPLRYAVTEREALYELFTIVHQGIKDDDCHRAILVAHNAAFDHSFLMAAANRTKIK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI + H AL D+ ++++ +++ Sbjct: 140 HNPFHPFATFDTAALSGLVLGQTVLLKACLTAGIPFNTSEAHSALYDAERTAELFCELVN 199 Query: 177 GGSQINFGFKTNEDRFFK 194 ++ K Sbjct: 200 RWKRLGGWTKVTTSSIHS 217 >gi|149408370|ref|YP_001294473.1| hypothetical protein ORF056 [Pseudomonas phage F8] gi|219523927|ref|YP_002455988.1| hypothetical protein PB1_gp58 [Pseudomonas phage PB1] gi|190333523|gb|ACE73778.1| conserved hypothetical protein [Pseudomonas phage PB1] Length = 184 Score = 56.1 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 64/175 (36%), Gaps = 10/175 (5%) Query: 7 MRKIVFDIETTGLDS-------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 MR V+D ETTGL K RIIE V + + F+C G Sbjct: 1 MRFAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGETILDEV--EFICNPGIVIEEII 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+ G+ +E L PSF + DF + IAHN FD + +L R + Sbjct: 59 TKITGLKNEDLIKHPSFLDQRQKVRDF-FSKADANIAHNLPFDKFMLTCDLARGKLGLEE 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + P + + + KH AL D LL +V +M Sbjct: 118 VNFPSLDICTVEESAPLFGHRMRLQHLYEHYCGPYVQKHRALDDVRLLHEVCKRM 172 >gi|322390849|ref|ZP_08064359.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903] gi|321142519|gb|EFX37987.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903] Length = 1464 Score = 56.1 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GIT+E Sbjct: 426 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVI-EEFDEFIDP-GHPLSAFTTQLTGITNE 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + EF F +AHNA FDVGF+NA +R + I Sbjct: 484 HVRGAKPLVQVLKEFQAFCEG--TVLVAHNATFDVGFMNANYERHGLPKITQPVIDTLEF 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 542 ARNLYPDFKRHGLGPLTKRFGVGLEH--HHMANYDAEATGRLL 582 >gi|295424856|ref|ZP_06817571.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664] gi|295065422|gb|EFG56315.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664] Length = 934 Score = 56.1 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 63/207 (30%), Gaps = 3/207 (1%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + N+ II+ G + + +T+ + P+ R+ L I + Sbjct: 10 FAVVDLETTGTQRENNNHIIQFGCAIIKNMKVV-KTYSFMINPH-REIPLSVQNLTRIHN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ P FS + + N ++ Sbjct: 68 EDVEKAPDFSHYAKKIIAILEDTVFVAHNVNFDLPFLNYELMQHGYPALTNKAIDTVELA 127 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 IA PS + + H++ A + LL D+ ++ + Sbjct: 128 KIAFPTLPSYKLSDLTSRLAIKHLNPHKADSDAYGTAILLIDIIHRLEKLPQATLNTLGS 187 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFT 214 ++ + I+ R + Sbjct: 188 LSSGLVRDTSWVLNKIADYYRKQKRPL 214 >gi|239906614|ref|YP_002953355.1| DNA polymerase III epsilon subunit [Desulfovibrio magneticus RS-1] gi|239796480|dbj|BAH75469.1| DNA polymerase III epsilon subunit [Desulfovibrio magneticus RS-1] Length = 242 Score = 56.1 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNG 52 +V D E TG D K D I+ + AV L S TF P Sbjct: 46 FVVLDTELTGFDPKRDAIVSVAAVRLRGLSIMAGETFAALTRPQR 90 >gi|254447860|ref|ZP_05061325.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium HTCC5015] gi|198262640|gb|EDY86920.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium HTCC5015] Length = 238 Score = 56.1 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 DIETTGL+++ D+I+ IG VE + P +S + Sbjct: 52 AIDIETTGLNAERDKIVSIGLVEFDASRVYLASAKHWLVNPGELSDSSVIVHGITH 107 >gi|254519350|ref|ZP_05131406.1| helicase [Clostridium sp. 7_2_43FAA] gi|226913099|gb|EEH98300.1| helicase [Clostridium sp. 7_2_43FAA] Length = 872 Score = 56.1 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 26/42 (61%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 IVFD+E+TG D D II+I A+++ Y + +F+ FL Sbjct: 496 NIIVFDVESTGTDVTEDEIIQIAAIKINKYGEVIDSFEKFLK 537 >gi|296877258|ref|ZP_06901298.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912] gi|296431778|gb|EFH17585.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912] Length = 1464 Score = 56.1 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 6/163 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GIT+E Sbjct: 426 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVI-EEFDEFIDP-GHPLSAFTTQLTGITNE 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + EF F +AHNA FDVGF+NA +R + I Sbjct: 484 HVRGAKPLVQVLKEFQAFCEG--TVLVAHNATFDVGFMNANYERHGLPKITQPVIDTLEF 541 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ L L KR+G+ + H H A D+ + Sbjct: 542 ARNLYPDFKRHGLGPLTKRFGVGLEH--HHMANYDAEATGRLL 582 >gi|262274550|ref|ZP_06052361.1| ribonuclease T [Grimontia hollisae CIP 101886] gi|262221113|gb|EEY72427.1| ribonuclease T [Grimontia hollisae CIP 101886] Length = 223 Score = 56.1 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 73/187 (39%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++EI AV L D + ++T + P G EAL +G Sbjct: 20 VVIDVETAGFNPQTDALLEICAVTLKMDEDGWLSPDKTIHFHVTPFEGANLEQEALAFNG 79 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + Q A +AHNA FD F+ A +R N Sbjct: 80 IKDPFSPLRGAVDEEHALKEIFKLIRKEQKASGCQRAIMVAHNANFDHSFVMAASERANL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + A + L CK GI + H AL D+ ++++ +++ Sbjct: 140 KRNPFHPFATFDTAALSGLALGQTVLAKACKTAGIAFDNNEAHSALYDTERTAELFCEIV 199 Query: 176 VGGSQIN 182 ++ Sbjct: 200 NRWKKLG 206 >gi|319892447|ref|YP_004149322.1| DinG family ATP-dependent helicase YoaA [Staphylococcus pseudintermedius HKU10-03] gi|317162143|gb|ADV05686.1| DinG family ATP-dependent helicase YoaA [Staphylococcus pseudintermedius HKU10-03] Length = 900 Score = 56.1 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 4/109 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG + D II+IG + + + + L I +E Sbjct: 7 YAVVDLETTGNQADYDEIIQIGITFVRNNQII-DHYHSMIK-TDLTIPTFIQALTSIEEE 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 L P F + + + + ++AHN FD+ F+ ++ + Sbjct: 65 MLNQAPYFKEVAHKIYSKIKD--CIFVAHNVNFDLNFLKRSFKKCHIHY 111 >gi|149197350|ref|ZP_01874401.1| DNA polymerase III [Lentisphaera araneosa HTCC2155] gi|149139368|gb|EDM27770.1| DNA polymerase III [Lentisphaera araneosa HTCC2155] Length = 210 Score = 56.1 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D E TGL K D+++ I AV++ ++ +F + +K E + +H + Sbjct: 30 YVVIDCEMTGLKPKQDKLLSIAAVKISQGRIQSQESFYRVIFQEKQKLRDETILIHRLNH 89 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + ++ EF DF QN + H D+ F+N + L P L Sbjct: 90 EQISTGSDQIAVLKEFSDFC--QNCIPVGHFFDIDLSFLNP---VMPLPFLYPHLDTRLL 144 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + PSS LC Y + H AL D+ + +++K++ + Sbjct: 145 VKTLQPCPSSIQLNE-LCDFYNLP--SFEAHNALGDATSTACLFLKILSELRK 194 >gi|312599149|gb|ADQ91172.1| hypothetical protein BpV2_005c [Bathycoccus sp. RCC1105 virus BpV2] Length = 432 Score = 56.1 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 15/221 (6%) Query: 7 MRKIVFDIETTGLD-------------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53 M I +D ETTGL R++ + V+ + ++ + P+ Sbjct: 1 MNYISWDTETTGLPMGYTKSTPDNVHLFDRCRMLTLAFVKYSSKGRELSSYHGLVYPDTF 60 Query: 54 KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQR 112 E+ +HGIT E K + + +AHN+ FD +R Sbjct: 61 NVPQESTNVHGITHEHALHKGQPFGYVYAAFKEAVSNTSILVAHNSSFDENCFFSECYRR 120 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 R ++ L H AL DS +Y Sbjct: 121 GFDTEPFKHVHFVDTLKMARSVLPGLHNHKLLTVYKYYFGHEFDAHDALNDSRACGKIYF 180 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 ++ + + ++ ++ K+ K + Sbjct: 181 -LLRDNEFKMKDVGIEKVTLKASDIASIIGMNPYKKPKEVL 220 >gi|332674336|gb|AEE71153.1| DNA-directed DNA polymerase III epsilon subunit [Helicobacter pylori 83] Length = 287 Score = 56.1 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 132 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177 >gi|317182753|dbj|BAJ60537.1| DNA polymerase III subunit epsilon [Helicobacter pylori F57] Length = 287 Score = 56.1 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 132 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177 >gi|317181232|dbj|BAJ59018.1| DNA polymerase III subunit epsilon [Helicobacter pylori F32] Length = 287 Score = 56.1 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 132 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177 >gi|317179729|dbj|BAJ57517.1| DNA polymerase III subunit epsilon [Helicobacter pylori F30] Length = 287 Score = 56.1 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 132 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177 >gi|317178251|dbj|BAJ56040.1| DNA polymerase III subunit epsilon [Helicobacter pylori F16] Length = 287 Score = 56.1 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 132 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177 >gi|308062811|gb|ADO04699.1| DNA polymerase III subunit epsilon [Helicobacter pylori Cuz20] Length = 287 Score = 56.1 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 132 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177 >gi|319399859|gb|EFV88106.1| exonuclease family protein [Staphylococcus epidermidis FRI909] Length = 184 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 9/188 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V+++D T +F + P + + +HGI E Sbjct: 6 FVALDFET--ANGKRTSICSVGMVKVIDNQIT-ESFHTLVNPFD-YFTETNINVHGIHPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F ++ F +AHNA FD+ ++ L+ +N D + Sbjct: 62 DVQDAPGFKHVYPYMLQFI--DQLPVVAHNAAFDMNVLHQSLKSLNIDTPSLTYFCSYQL 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R + + H AL D+ + + +++ + Sbjct: 120 AKRTINAYRYGL---KHLMNHYHLDFHGHHDALNDAKACAMITYRLLKHYDDLQSMLNIY 176 Query: 189 EDRFFKEE 196 E + Sbjct: 177 EKNLKDKG 184 >gi|254490869|ref|ZP_05104052.1| exonuclease superfamily [Methylophaga thiooxidans DMS010] gi|224464041|gb|EEF80307.1| exonuclease superfamily [Methylophaga thiooxydans DMS010] Length = 240 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 17/178 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + D ETTGLD + + I+ G V L ++ +QV + PN S E++ H IT Sbjct: 50 FVALDFETTGLDPRYNEIVSFGLVPFTLRGIRPSDGHYQV-VKPNCV-LSEESIAFHRIT 107 Query: 67 DEFLKDKPSFSS-----------IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 + P E+ +A + + + + Sbjct: 108 HSQVDTAPPLEKVLDELLGRLSGCIVVVHYQQIERPFLDLACRKLWGEHCLFPLIDTMAI 167 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + L+ +RYG+ H A +D+ +++++ Sbjct: 168 EARWQRSGWKHRLKKTLGLQPVSIRLDDSRRRYGLPSYSA--HHAKVDAMATAELFLA 223 >gi|71414299|ref|XP_809256.1| exonuclease [Trypanosoma cruzi strain CL Brener] gi|70873611|gb|EAN87405.1| exonuclease, putative [Trypanosoma cruzi] Length = 316 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 7/51 (13%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-------NRTFQVFLCP 50 M I D+ETTG ++ D I+ IGAVEL T R+F + P Sbjct: 94 MSAICVDLETTGFSAQRDDIVSIGAVELRWDGTTLQQWVLGARSFFRTVRP 144 >gi|313496718|gb|ADR58084.1| DNA polymerase III, epsilon subunit [Pseudomonas putida BIRD-1] Length = 236 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-----NRTFQV 46 R +V D+ET+GL+ D+++ IGAV + D + RT Sbjct: 40 RWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHR 83 >gi|167031397|ref|YP_001666628.1| DNA polymerase IIIsubunit epsilon [Pseudomonas putida GB-1] gi|166857885|gb|ABY96292.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1] Length = 236 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-----NRTFQV 46 R +V D+ET+GL+ D+++ IGAV + D + RT Sbjct: 40 RWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHR 83 >gi|26987095|ref|NP_742520.1| DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440] gi|24981722|gb|AAN65984.1|AE016227_5 exonuclease [Pseudomonas putida KT2440] Length = 236 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-----NRTFQV 46 R +V D+ET+GL+ D+++ IGAV + D + RT Sbjct: 40 RWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHR 83 >gi|148545634|ref|YP_001265736.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1] gi|148509692|gb|ABQ76552.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1] Length = 236 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-----NRTFQV 46 R +V D+ET+GL+ D+++ IGAV + D + RT Sbjct: 40 RWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHR 83 >gi|82548268|gb|ABB82959.1| putative DNA polymerase type III, exonuclease domain [uncultured organism HF70_19B12] Length = 270 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 81/204 (39%), Gaps = 10/204 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV--FLCPNGRKNSPEALKLHGITDEF 69 FD ETTGL+ + DRI++ + + + P G K ++ +HGI++E Sbjct: 12 FDTETTGLNPRKDRILQYA---FIGRDVDGSSVCQVELIDP-GIKIPEASMNVHGISNED 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + SF ++ + + NA FD FI E R+ + P ++DTL + Sbjct: 68 VTGRGSFGMHSNDIAELIDGAIIVGHNINA-FDWRFIEFEFMRVGEAVPSPYALVDTLEL 126 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 AR R+ L LCKRYG + + + + + M+ G+Q Sbjct: 127 ARGLRIPGRHTLGHLCKRYG---IGLDRAHSADADAAATLILLWKMIEGNQSILEDGLEG 183 Query: 190 DRFFKEEKKTVPNISLLKRDKPLF 213 + + +I + L Sbjct: 184 IQDLCNRNRKSSSIRKEGLRRVLP 207 >gi|171780060|ref|ZP_02920964.1| hypothetical protein STRINF_01848 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281408|gb|EDT46843.1| hypothetical protein STRINF_01848 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 827 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 80/185 (43%), Gaps = 8/185 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ N + V D+E TG + II++G V + + +T+Q + P+ + Sbjct: 1 MMQVNSQKYAVVDLEATGAHAM-AEIIQVGIVIIENDQIV-KTYQTDVNPHEALT-EHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITDE L P FS + E + ++ ++AHN KFD + + + Sbjct: 58 HLTGITDEQLAKAPDFSKVAQEIYHLISD--CVFVAHNVKFDANLLA--EKLFLEGYELR 113 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + ++DT+ +++ +P+ + + H A+ D++ + + +K+ Sbjct: 114 TPLVDTVELSQVFYPTLEKYTLGHLADV-LQLDLTDAHTAISDAYATAQLLLKLKEKMES 172 Query: 181 INFGF 185 + Sbjct: 173 LPKEL 177 >gi|118463087|ref|YP_879676.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104] gi|118164374|gb|ABK65271.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104] Length = 329 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 76/207 (36%), Gaps = 11/207 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L K ++ L P P +HG+T L Sbjct: 19 VIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPG---VDPGPTHVHGLTAAML 75 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D+P F+ I + + +AHN FD F+ AE + + + + Sbjct: 76 EDQPQFADIAGDVVEVLRG--RTLVAHNVAFDYAFLAAEAELAGIELPVDTVMCTVELAR 133 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R L +L +G+T H A D+ +L+ V + + + + Sbjct: 134 RLDLGIDNLRLETLAAYWGVTQQRP--HDAFDDAMVLTGVLASALQRARERDIWLPVHPV 191 Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRIT 217 + V + L +PL + Sbjct: 192 TRRRWPNGRVTHDEL----RPLKVLAS 214 >gi|330448832|ref|ZP_08312478.1| exonuclease family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493023|dbj|GAA06975.1| exonuclease family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 376 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 8/165 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ETTGLD + ++EI V+ + P ++ EA +HGI+ E Sbjct: 2 IYLDTETTGLDPDFNEVLEIAIVDREGKIL----LNTLVKPQRNESWHEAQVIHGISPEM 57 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P+ + D Q+ +N +FD F++ + + Sbjct: 58 VANAPTMEDLKPTINDIVKGQHVR--IYNKEFDAAFVDLSAAEKTSCVMRDMAKFNGYWN 115 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + K + H AL D+ + V M Sbjct: 116 NWHCDYRLLRLSEAASKMS--LSWDGTAHRALADTQMTRLVDNAM 158 >gi|308183650|ref|YP_003927777.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4] gi|308065835|gb|ADO07727.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4] Length = 287 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 132 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177 >gi|297380606|gb|ADI35493.1| DNA polymerase III polC-type [Helicobacter pylori v225d] Length = 287 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 132 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177 >gi|254780064|ref|YP_003058171.1| DNA polymerase III subunit epsilon [Helicobacter pylori B38] gi|254001977|emb|CAX30236.1| DNA polymerase III epsilon subunit [Helicobacter pylori B38] Length = 287 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 132 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177 >gi|218265111|ref|ZP_03478699.1| hypothetical protein PRABACTJOHN_04409 [Parabacteroides johnsonii DSM 18315] gi|218221600|gb|EEC94250.1| hypothetical protein PRABACTJOHN_04409 [Parabacteroides johnsonii DSM 18315] Length = 174 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 7/170 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R D ET + K I IG + D + + + P + +HGIT Sbjct: 3 RFAAIDFET--ANGKRSSICSIGIAIIEDNKVIDSIY-TLVRPYPNFYTRFTTAVHGITM 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P F ++SE + +AHN+ FD G + A + + Sbjct: 60 QDTIDSPDFEEVWSEIAGKLQD--IPLVAHNSPFDEGCLRAAHEAYDLAYPKYQFYCTCR 117 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R + L ++ G +++ H A+ D++ + + MM Sbjct: 118 LSRRMYPFLVNHQLQTVAAHCGYDLTY--HHHAMADAYACAHIAATMMRE 165 >gi|319892935|ref|YP_004149810.1| DNA polymerase III polC-type [Staphylococcus pseudintermedius HKU10-03] gi|317162631|gb|ADV06174.1| DNA polymerase III polC-type [Staphylococcus pseudintermedius HKU10-03] gi|323464018|gb|ADX76171.1| conserved hypothetical protein [Staphylococcus pseudintermedius ED99] Length = 186 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 71/196 (36%), Gaps = 12/196 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ + + D ET + K I +G V+++ TF + PN + Sbjct: 1 MMENS---FVALDFET--ANYKRTSICSVGMVKVVANEIV-ETFYTLVNPNDFFA-ARNI 53 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HGI + ++ P+F+ ++ F + +AHNA FD+ + I + L Sbjct: 54 EVHGIQAKDVQHSPNFAYVYPYMMQFIGD--LPVVAHNAAFDMSVL---HASIQAENLIT 108 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + S K S + H AL D+ + + +++ Sbjct: 109 PPMTYFCSYQLAKRTVSARRHGLKHMMSHFNLDFHGHHDALNDAKACAMITYRLLKHYPS 168 Query: 181 INFGFKTNEDRFFKEE 196 +N + + ++ Sbjct: 169 LNNVLQVYGKQLTDKD 184 >gi|317013348|gb|ADU83956.1| DNA polymerase III subunit epsilon [Helicobacter pylori Lithuania75] Length = 287 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 132 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 177 >gi|221633099|ref|YP_002522324.1| DNA polymerase III subunit epsilon [Thermomicrobium roseum DSM 5159] gi|221156634|gb|ACM05761.1| DNA polymerase III epsilon subunit [Thermomicrobium roseum DSM 5159] Length = 228 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 1/65 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D E TGLD + D ++ +GAV ++ +F + P + + Sbjct: 35 VLDAEMTGLDPERDELLALGAVRMVGTRLLLGASFYQLIRPQRQGWGQSVTVHGIRPVDV 94 Query: 70 LKDKP 74 + P Sbjct: 95 VGAPP 99 >gi|296166805|ref|ZP_06849223.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897821|gb|EFG77409.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 330 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 75/207 (36%), Gaps = 11/207 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G R+I + + L D + ++ L P P +HG+T L Sbjct: 19 VIDVETSGFRPGQARVISLAVLGLDDDGRVEQSVVSLLNPG---VDPGPTHVHGLTAAML 75 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D+P F+ + + +AHN FD F+ AE + + S + Sbjct: 76 EDQPQFADVVDDVVK--VLDGRTLVAHNVAFDYAFLAAEAELAEAELPIDSVMCTVELAR 133 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R L +L +G+ H A D+ +L+ V + Q + + Sbjct: 134 RLDLGIDNLRLETLAAHWGVP--QERPHDAFDDAMVLTGVLASALERARQRDIWLPVHPV 191 Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRIT 217 + V + L +PL + Sbjct: 192 TRRRWPNGRVTHDEL----RPLKVLAS 214 >gi|308186683|ref|YP_003930814.1| ribonuclease T [Pantoea vagans C9-1] gi|308057193|gb|ADO09365.1| ribonuclease T [Pantoea vagans C9-1] Length = 222 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 72/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A+ L + + ++T + P G PEAL G Sbjct: 20 VVIDVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHPEALAFTG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A +AHNA FD+ F++A +R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFDLNFMSAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACIAAGMEFDSTQAHSALYDTQQTATLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|304397653|ref|ZP_07379530.1| ribonuclease T [Pantoea sp. aB] gi|304354825|gb|EFM19195.1| ribonuclease T [Pantoea sp. aB] Length = 222 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 72/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A+ L + + ++T + P G PEAL G Sbjct: 20 VVIDVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHPEALAFTG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A +AHNA FD+ F++A +R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFDLNFMSAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACIAAGMEFDSTQAHSALYDTQQTATLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|170693649|ref|ZP_02884807.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] gi|170141431|gb|EDT09601.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] Length = 423 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 5/102 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + RI E+G VE+ T + + P + +L GIT+ Sbjct: 55 VFVDLETTGGSTSEHRITEVGVVEVGPAGVT--RWSSLVDPQ-QPIPSFIQQLTGITNAM 111 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 ++ P+F +I E + N ++AHNA FD GF+ E + Sbjct: 112 VRGAPTFDAIAPELFARLNG--KLFVAHNASFDRGFLRGEFR 151 >gi|309811312|ref|ZP_07705099.1| exonuclease [Dermacoccus sp. Ellin185] gi|308434619|gb|EFP58464.1| exonuclease [Dermacoccus sp. Ellin185] Length = 221 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 7/172 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ET+GLD R+IE+ +L R + + G + +HG++D Sbjct: 15 FAVVDVETSGLDPLRHRVIEVAVTQLTPSGGLEREWSSLVRARGGTGP---VHIHGLSDY 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F+ + E + + +AHNA FD F+ AE +R ++ R+ Sbjct: 72 DVRDAPGFADLVDELSELLDG--RILVAHNAAFDWAFLAAEARRAGRELPVSERLCTWHL 129 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + P+ L +L + + +I + H A D +L +V + + + Sbjct: 130 ARGLELPTDNLRLGTLAEYW--SIPVENAHRAGDDVRVLVEVLRRCLDEAGR 179 >gi|330976913|gb|EGH76936.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 203 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 7/207 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 3 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 61 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIERT--REQSFACS 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +ARR P + N RY H A+ D+ + +++ + Q + Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTAYLTNELRQTHGISA 176 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLF 213 + +K IS + + Sbjct: 177 ISHKMLCSLQKVPAAKISETLKRQRGV 203 >gi|289675841|ref|ZP_06496731.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. syringae FF5] Length = 204 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 7/207 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 4 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 62 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIERT--REQSFACS 117 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +ARR P + N RY H A+ D+ + +++ + Q + Sbjct: 118 LLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTAYLTNELRQTHGISA 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLF 213 + +K IS + + Sbjct: 178 ISHKMLCSLQKVPAAKISETLKRQRGV 204 >gi|298528189|ref|ZP_07015593.1| DNA polymerase III, epsilon subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298511841|gb|EFI35743.1| DNA polymerase III, epsilon subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 249 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 65/175 (37%), Gaps = 12/175 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D E TGL+ K D I+ IGA+ + + ++F CP R +++ +HGIT Sbjct: 52 FVVLDTELTGLNVKKDEIVTIGALRISEMRIDMEQSFYFCACP-TRDVPKQSIVIHGITP 110 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P DF N+ + HN D+ IN EL++ L I Sbjct: 111 SEAQKAPPLKEALQGLLDFC--GNSIIVGHNINLDISVINRELKKEFGGELHNPCIDTMR 168 Query: 128 SIARRKHPSSRNDLNSLCKRYGITI--------SHRSKHGALLDSHLLSDVYIKM 174 + + + ++H A D+ + ++I + Sbjct: 169 LARQYREGQWTGAYECYEEYSYNLRKLSREFGLPLFTEHNAFTDALQTAYLFIYL 223 >gi|73662206|ref|YP_300987.1| exonuclease [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494721|dbj|BAE18042.1| putative exonuclease [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 184 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 66/173 (38%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D ET + K I +G V+++++ T +F + PN S + + +H I E Sbjct: 6 FIALDFET--ANGKRTSICAVGMVKVVNHQIT-ESFYTLVNPND-YFSQQNIAVHSIHPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P+F +++ F + +AHNA FD+ ++ + D + + Sbjct: 62 QVEDAPTFQTVYPYMLQFIGD--LPVVAHNAAFDMNVLHESISAFGFDTPNMTYFCSLQL 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + H AL D+ + + +++ + Sbjct: 120 SRRTVENHRYGLN---YMMQYYNLDFHGHHDALNDAKACAMITFRLLKHYDDL 169 >gi|213964476|ref|ZP_03392676.1| DNA polymerase III epsilon subunit [Corynebacterium amycolatum SK46] gi|213952669|gb|EEB64051.1| DNA polymerase III epsilon subunit [Corynebacterium amycolatum SK46] Length = 195 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64 + D+ETTGLD D+++ IG V + + + + P + S Sbjct: 21 WLAVDVETTGLDPSKDQLLSIGWVAVEGRDIVLEESGHLIIRPEREEVSVGESATVH 77 >gi|154246978|ref|YP_001417936.1| DNA polymerase III subunit epsilon [Xanthobacter autotrophicus Py2] gi|154161063|gb|ABS68279.1| Exonuclease RNase T and DNA polymerase III [Xanthobacter autotrophicus Py2] Length = 298 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 70/241 (29%), Gaps = 33/241 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL---DYSK--TNRTFQVFLCPNGRKNSPEALKLHGI 65 V D+ETTGLD + D IIE+ D + +FQ P+ Sbjct: 46 VVDVETTGLDPQRDEIIELAMTPFSYGLDGTIFSVGDSFQGLRQPSEPILPEITAITGIT 105 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + I F + +IAHNA FD F + P Sbjct: 106 NEMVAGQ-----IIDPAVVATFAAPASLFIAHNAAFDRRFFERFSDVFSTKPW------- 153 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI------------K 173 S+++ + L +H A+ D ++ + Sbjct: 154 ACSLSQIDWAAEGFQGAKLAYLAQAAGFFYDRHRAMHDCLATIELLAMQLPRSGVTGLSR 213 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVP----NISLLKRDKPLFTRITKEELDEHDKTIQ 229 ++ G +++ F ++ N + + + + + + + + Sbjct: 214 LLDGARTVSWRIWAENSPFDLKDVLKARGYRWNGDPGPHPRAWYIDVPEAQREAEVRFLS 273 Query: 230 T 230 T Sbjct: 274 T 274 >gi|325271479|ref|ZP_08137997.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. TJI-51] gi|324103369|gb|EGC00698.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. TJI-51] Length = 236 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 22/33 (66%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 R +V D+ET+GL+ D+++ IGAV + D + Sbjct: 40 RWVVLDLETSGLNPNRDQVLSIGAVAIEDGAID 72 >gi|311746871|ref|ZP_07720656.1| exonuclease [Algoriphagus sp. PR1] gi|126578557|gb|EAZ82721.1| exonuclease [Algoriphagus sp. PR1] Length = 267 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 79/199 (39%), Gaps = 9/199 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+E TG + DRI+EI V+L +D + + P G EA +HG+ D+ Sbjct: 11 FFDLEATGTNISTDRIVEISIVKLKIDGG--QEIYTRRVNP-GVPIPLEASLIHGLYDKD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LKD+PSF I E + F + I ++ + ++ L Sbjct: 68 LKDEPSFKDIAKEVYQFIGGSDLSGFN----VLKYDIPLLVEEFLRAGIEFELDKRNLLD 123 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS-QINFGFKTN 188 A++ + ++ + + H A D+ DV+I + + + + N Sbjct: 124 AQKIFHMMEKRNLTAAYKFYCGKTLENAHSAEADTLATMDVFISQVERYNGEEAIDLQGN 183 Query: 189 EDRFFKEEKKTVPNISLLK 207 + F+ + K + ++ K Sbjct: 184 KLGVFENDMKKIHDLVNEK 202 >gi|242241732|ref|ZP_04796177.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144] gi|242234822|gb|EES37133.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144] Length = 184 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 9/178 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V+++D T +F + P + + +HGI E Sbjct: 6 FVALDFET--ANGKRTSICSVGMVKVIDNQIT-ESFHTLVNPFD-YFTETNINVHGIHPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F ++ F +AHNA FD+ ++ L+ +N D + Sbjct: 62 DVQDAPGFKHVYPYMLQFI--DQLPVVAHNAAFDMNVLHQSLKSLNIDTPSLTYFCSYQL 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 R + + H AL D+ + + +++ + Sbjct: 120 AKRTINAYRYGL---KHLMNHYHLDFHGHHDALNDAKACAMITYRLLKHYDDLQSMLS 174 >gi|71738029|ref|YP_276841.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558582|gb|AAZ37793.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326412|gb|EFW82465.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076] Length = 237 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 24/200 (12%), Positives = 68/200 (34%), Gaps = 6/200 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ET+GL+ D+++ +GAV + D + + F+ L + + + + Sbjct: 42 RWVVLDLETSGLNMNRDQVLSMGAVVIEDGAIDLGQQFERTLLRVDHKISPAVLIHGLAP 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +P + + ++ + +A FD ++ L+ L Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLSRALKESLGYRLQHPFFDA 157 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++ + +H A D+ + +++ + + + Sbjct: 158 AEIAPMLCEHANLRHAGLDDWTRFFGLHAEERHHASADALVTAELALILFSHARRQQIDS 217 Query: 186 KTNEDRFFKEEKKTVPNISL 205 + + ++ + S Sbjct: 218 PLRLEEALGQWRRRRQSHSF 237 >gi|172057786|ref|YP_001814246.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Exiguobacterium sibiricum 255-15] gi|171990307|gb|ACB61229.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium sibiricum 255-15] Length = 937 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 5/96 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + +V D+ETTG K D +IEIG + D T R F+ P + P +L GIT Sbjct: 4 KFVVVDLETTGHSIKSGDEMIEIGVAVIEDGQITER-LSAFVRPQ-KPIPPFISQLTGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 DE + SF++I + ++AHN +FD Sbjct: 62 DEDVAQAESFATIAPRVLQLLDG--GVFVAHNVQFD 95 >gi|220915934|ref|YP_002491238.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter dehalogenans 2CP-1] gi|219953788|gb|ACL64172.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter dehalogenans 2CP-1] Length = 207 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 14/179 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALKLHGITD 67 D+ET GLD + D I+ +G V + + +F + P P ++ H + Sbjct: 21 ALDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFSTLIRPEAAAAAIDPGSILAHQLVP 80 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS------ 121 + PS S+ ++ + + H A DV F+ +R + +P Sbjct: 81 HDVATAPSLDSVLADV--DLRAREGALLVHQASLDVAFLKRAYRRCGRRWPEPPVVDTVA 138 Query: 122 ---RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + PS DLN L R + +H AL D+ +++++ + Sbjct: 139 LLIKAAKRQRFVNPDAPSMEPDLNLLAARRQRGLPDYGQHDALTDAVATAELFLVLRRQ 197 >gi|295096042|emb|CBK85132.1| RNAse T [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 219 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 72/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLVPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + + A +AHNA FD F A +R + Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKMVRKGMKENDCSRAIMVAHNATFDHSFTMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C GI H AL D+ ++++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACITAGIAFDGTQAHSALYDTERTAELFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|167837493|ref|ZP_02464376.1| possible DNA polymerase/helicase [Burkholderia thailandensis MSMB43] Length = 379 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EIG V + + T+ + P + P +L GITD + Sbjct: 17 FVDLETTGGSAAEHRITEIGVVVVNASHVS--TWTTLVDP-RQPIPPFIQQLTGITDAMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P+F+ I S ++ + ++AHNA FD GF Sbjct: 74 RGAPTFADIASALFERLDG--KLFVAHNASFDRGF 106 >gi|309789846|ref|ZP_07684425.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] gi|308228150|gb|EFO81799.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] Length = 230 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%) Query: 8 RKI---VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN 51 R++ V DIET+GL+ K D ++ IG VE+ NR + + P Sbjct: 30 REVGYSVLDIETSGLNHKRDALLAIGLVEIEEGRIHLNRHWYTLVRPP 77 >gi|330954936|gb|EGH55196.1| exonuclease [Pseudomonas syringae Cit 7] Length = 237 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 24/200 (12%), Positives = 68/200 (34%), Gaps = 6/200 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ET+GL+ D+++ +GAV + D + + F+ L + + + + Sbjct: 42 RWVVLDLETSGLNMNRDQVLSMGAVVIEDGAIDLGQQFERTLLRVDHKISPAVLIHGLAP 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +P + + ++ + +A FD ++ L+ L Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLSRALKESLGYRLQHPFFDA 157 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++ + +H A D+ + +++ + + + Sbjct: 158 AEIAPMLCEHANLRHAGLDDWTRFFGLHAEERHHASADALVTAELALILFSHARRQQIDS 217 Query: 186 KTNEDRFFKEEKKTVPNISL 205 + + ++ + S Sbjct: 218 PLRLEEALGQWRRRRQSHSF 237 >gi|320547177|ref|ZP_08041471.1| DNA polymerase III [Streptococcus equinus ATCC 9812] gi|320448164|gb|EFW88913.1| DNA polymerase III [Streptococcus equinus ATCC 9812] Length = 827 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 5/104 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ N + V D+E TG + II++G V + + +T+Q + P+ + + Sbjct: 1 MMQVNSQKYAVVDLEATGAHAM-AEIIQVGIVIIENKKIV-KTYQTDVNPH-EPLTEHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 L GITDE L P FS + + ++ ++ ++AHN KFD Sbjct: 58 NLTGITDEQLAKAPDFSQVAQKIYNMISD--CVFVAHNVKFDAN 99 >gi|323351851|ref|ZP_08087502.1| DNA polymerase III [Streptococcus sanguinis VMC66] gi|322121908|gb|EFX93640.1| DNA polymerase III [Streptococcus sanguinis VMC66] Length = 814 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S N +II+IG V + + T +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-NAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ + A ++AHN KFD + L D L P Sbjct: 58 LTGLNDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ + L +LC IS + H AL D+ + +++K+ + Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172 Query: 182 NFGF 185 Sbjct: 173 PKAL 176 >gi|229592763|ref|YP_002874882.1| putative exonuclease [Pseudomonas fluorescens SBW25] gi|229364629|emb|CAY52540.1| putative exonuclease [Pseudomonas fluorescens SBW25] Length = 203 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 74/197 (37%), Gaps = 9/197 (4%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V L +R +Q + G + +L GI+ Sbjct: 3 RIAVIDFETTGITPNSHCRATEIAVVILERGQIVDR-YQSLMN-AGVRVPGFIEQLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--I 124 + L+ P + +E +F +AHNA FD F + EL I + L + Sbjct: 61 NAMLRSAPPAERVMNEVNEFVGT--TPLMAHNAAFDQKFWDYELGLIRRTRLQKFACSLL 118 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQIN 182 + LN+ + +HR+ A + ++L + + ++ G +++ Sbjct: 119 LARRLMPTAPNHKLGTLNAFAQLPHTGKAHRAMADAEMAANLTAHLAQELRSTHGLRELS 178 Query: 183 FGFKTNEDRFFKEEKKT 199 + + Sbjct: 179 HELLCTLQKVPAAKINE 195 >gi|228473001|ref|ZP_04057758.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC 33624] gi|228275583|gb|EEK14360.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC 33624] Length = 453 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 66/172 (38%), Gaps = 7/172 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI T+R F + P +K ++L GI+++ Sbjct: 2 YAIIDIETTGGKMGEEAITEIAIYRFDGQKVTDR-FISLINPE-KKIDDFVVRLTGISNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + ++ +AHNA FD ++ E + + D R Sbjct: 60 TVRQAPKFYEVAKRIVE--ITEDCILVAHNASFDYRVLSLEFR---RLGFDYQRSTLCTV 114 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ + + I ++H A D+ ++ ++ +Q Sbjct: 115 EMSQRLLPDEPSYSLGKLTRSLGIPLLNRHRANGDAMATVHLFKLLLDRDTQ 166 >gi|260769062|ref|ZP_05877996.1| ribonuclease T [Vibrio furnissii CIP 102972] gi|260617092|gb|EEX42277.1| ribonuclease T [Vibrio furnissii CIP 102972] gi|315180803|gb|ADT87717.1| ribonuclease T [Vibrio furnissii NCTC 11218] Length = 219 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 70/200 (35%), Gaps = 14/200 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++EI AV L T + P G AL+ +G Sbjct: 20 VVIDVETAGFNPQTDALLEICAVTLAMDENGDLHPASTIHFHVEPFEGANLEKAALEFNG 79 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + A +AHNA FD GF+ A +R Sbjct: 80 IYDPFSPLRGAVSEEHALKEIYKQVRKEQKAADCSRAIIVAHNAAFDHGFVMAASERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKAAGMAFDNREAHSALYDTQQTAELFCGIV 199 Query: 176 VGGSQINFGFKTNEDRFFKE 195 + ++ + Sbjct: 200 NQWKALGGWPLADDHNLNNK 219 >gi|146309558|ref|YP_001190023.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina ymp] gi|145577759|gb|ABP87291.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina ymp] Length = 235 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 5/138 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGLD + I+ +G V L + + + P G + S E++ H IT Sbjct: 46 VALDVETTGLDPREHAIVSLGLVPLNLQRIRCSEARYWVVKPAG-ELSAESVTFHHITHS 104 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P +S+ E + + + + + R + IIDT+ Sbjct: 105 DIRHAPRLASVLDELLEALAGKVVVA---HYRHIERSFLDQALRRHLGEGLIFPIIDTME 161 Query: 129 IARRKHPSSRNDLNSLCK 146 + R HP R + + Sbjct: 162 LEARLHPKRRVSWWNRLR 179 >gi|330938176|gb|EGH41873.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. pisi str. 1704B] Length = 203 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 77/207 (37%), Gaps = 7/207 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 3 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 61 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIERT--REQSFACS 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +ARR P + N RY H A+ D+ + +++ + Q + Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTAYLTNELRQTHGISA 176 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLF 213 + +K I+ + + Sbjct: 177 ISHKMLCSLQKVPAAKINETLKRQRGV 203 >gi|303246654|ref|ZP_07332932.1| DNA polymerase III, epsilon subunit [Desulfovibrio fructosovorans JJ] gi|302491994|gb|EFL51872.1| DNA polymerase III, epsilon subunit [Desulfovibrio fructosovorans JJ] Length = 240 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D E TG D + ++ IGAV L + +F + P R +A +HG+TD Sbjct: 43 FVVVDTELTGFDPRRHAMVAIGAVRLRGLTLLPGESFFSLVRP-SRDVPRDASLIHGLTD 101 Query: 68 EFLKDKP 74 L D P Sbjct: 102 AALADAP 108 >gi|290475494|ref|YP_003468382.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Xenorhabdus bovienii SS-2004] gi|289174815|emb|CBJ81616.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Xenorhabdus bovienii SS-2004] Length = 208 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 64/186 (34%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A+ L + T + P G P AL G Sbjct: 12 VVIDVETGGFNAQTDALLEIAAITLKMDEEGWLMPADTLHFHIDPFEGANLDPAALAFTG 71 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + N A +AHNA FD F+ A +R Sbjct: 72 IDPTNPLRGAVSEYTALHAIFKMIRKGMKDNNCNRAIIVAHNASFDHNFVMAAAERSGLK 131 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C I H AL D+ + ++ +++ Sbjct: 132 RNPFHPFATFDTAALSGLVLGQTILAKACITAEIPFDSNQAHSALYDTDRTALLFCELVN 191 Query: 177 GGSQIN 182 ++ Sbjct: 192 RWKRLG 197 >gi|237710744|ref|ZP_04541225.1| DNA Pol III epsilon chain [Bacteroides sp. 9_1_42FAA] gi|229455466|gb|EEO61187.1| DNA Pol III epsilon chain [Bacteroides sp. 9_1_42FAA] Length = 260 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 62/181 (34%), Gaps = 12/181 (6%) Query: 6 KMR------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 KM+ + FD+ETTG + DRI+EI +++ S T + + P ++ Sbjct: 2 KMKLNLKNPIVFFDLETTGTNINTDRIVEICYLKVYPNSN-EETKTMRINPEMH-IPEQS 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGI D + D P+F + E + N L+ + Sbjct: 60 SAIHGIYDADVADCPTFKEVAKEIARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMM 119 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ID I + S ++ + H A D+ +V + Sbjct: 120 KRKFIDVQVIYHK----LEQRTLSAAYKFYCGKNLEDAHTAEADTRATYEVLKSQLDRYP 175 Query: 180 Q 180 + Sbjct: 176 E 176 >gi|123965921|ref|YP_001011002.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9515] gi|123200287|gb|ABM71895.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9515] Length = 270 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 67/217 (30%), Gaps = 10/217 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCPNGRKNSPEALKLHGI 65 + ++ D ETTGLD D IIEIG + + + FL P S + Sbjct: 48 KILILDTETTGLDENKDEIIEIGCILF--HVTSKSVLSQVSFLFP----VSSNEAEHVNG 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + F+ + +AHN +FD + + S Sbjct: 102 ISAEVSNIKQPWEEGLNFFLKLVDCADLIVAHNVEFDKKWFGKGRLPNLEKNWICSLEDI 161 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL--SDVYIKMMVGGSQINF 183 S + +L + HR+ S + + ++++ ++ F Sbjct: 162 NWSFQKNLKNRPSVTDLALSFSIPVWSLHRALSDCFYISEVFKKCENLEELLIKATEPRF 221 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 +K + K + ++T EE Sbjct: 222 LYKALVTYSERSLAKKAGFRWNNPAEGAWARKLTVEE 258 >gi|33865550|ref|NP_897109.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8102] gi|33632719|emb|CAE07531.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8102] Length = 256 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 78/218 (35%), Gaps = 14/218 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ETTGLD + DR +E+GA+ +++ Q FL P + + Sbjct: 29 IIDTETTGLDPEKDRCLEVGAILFDVSTRSVLAQQSFLLPVETNAAEP----INRIPASV 84 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P + ++D + +AHNA FD + + ++ L Sbjct: 85 TRLPQPWTGALRWFDELLTASDVLVAHNAVFDRQWFGRDPLPAVSH--PWLCSMEDLRWP 142 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------MMVGGSQINFG 184 + SR + L YG+ + H AL D + L++V+ + M++ G + Sbjct: 143 AERQLRSRPSVRDLALAYGVPVWSA--HRALTDCNYLAEVFARCDDLETMLLHGLEPRQL 200 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222 + + + R+++ E+ Sbjct: 201 MRARVSYDNRHLAREAGFRWNDPVKGAWTRRLSQREVK 238 >gi|329731357|gb|EGG67723.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus subsp. aureus 21193] Length = 784 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQII-DTYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E + + ++AHN FD+ FI + N I Sbjct: 64 MLQQAPYFNQVAQEIYGKIKD--CIFVAHNVDFDLNFIKKAFKDYNIQYRPKKVIDTLEI 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L+ L + +GIT + H A D+ + + I ++ Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175 >gi|312795413|ref|YP_004028335.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454] gi|312167188|emb|CBW74191.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454] Length = 281 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 5/102 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG DRI E+G +E+ R + + P + P +L GITD + Sbjct: 47 FVDLETTGGRPGLDRITEVGVIEVDRDGV--RRWSTLVDP-LQPIPPFVQQLTGITDAMV 103 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + P+F ++ +E + +IAHNA+FD GF+ ++ Sbjct: 104 RGAPTFDALAAELARRLDG--KLFIAHNARFDHGFLKKAFEQ 143 >gi|167772669|ref|ZP_02444722.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM 17241] gi|167665147|gb|EDS09277.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM 17241] Length = 866 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 25/43 (58%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50 R +VFD+E+TG D D I++I AV L F+ FLCP Sbjct: 511 RVVVFDVESTGADVYTDDIVQIAAVRLSPGGGEAVRFERFLCP 553 >gi|159897533|ref|YP_001543780.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus ATCC 23779] gi|159890572|gb|ABX03652.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 282 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++FD+E+TGLD + RI E+ A+ + +R + + P R+ P A ++GI+ Sbjct: 26 FVLFDMESTGLDVQIGHRICEMAAMRIQGREIIDRC-EFLVNPQ-REIDPAAFAVNGISA 83 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + + PSF I+ + F+E A +AHNA FD+GF+ +EL RI+ PL + Sbjct: 84 EMVANAPSFGEIWPKVNKLFHE--AVLVAHNAYFDIGFLTSELSRIDLPPL----ETPVI 137 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +L H A+ D L V+ ++ Sbjct: 138 DTLALARRYITARRYNLTSLATNLGEKAPSHRAMSDVVALRPVFEHLL 185 >gi|325297487|ref|YP_004257404.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] gi|324317040|gb|ADY34931.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] Length = 183 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 9/178 (5%) Query: 8 RKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 I D ET TG K I E G + + T +T + P G + S +++HGI Sbjct: 5 NFIAIDFETATG---KRASICEAGICVVRNGEVT-KTRSWLVRPQGNRYSYWNMQIHGIR 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D P F +++E ++ + +AHNA FDVG I L+ + D + Sbjct: 61 PNDTVDSPEFPEVWAEISEYLKD-IPILVAHNAAFDVGCIRHSLELYGMEKPDITYYCSL 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + + + I + H A D+ + + ++++ + Sbjct: 120 RAARKLYDFGCNSLD---YLCDQFKIPYGRHHRAGDDAEMCARLFLREIKDFGLCGLE 174 >gi|90417008|ref|ZP_01224937.1| ribonuclease T [marine gamma proteobacterium HTCC2207] gi|90331355|gb|EAS46599.1| ribonuclease T [marine gamma proteobacterium HTCC2207] Length = 221 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 13/193 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S+ D ++EI AV L + T + P G AL+ G Sbjct: 29 VVVDVETGGFNSRTDAMLEIAAVILEMDAQGNIQIKETHSKNIDPFPGAVVEKAALEFTG 88 Query: 65 ITDEFLKDKP--------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + P + +AHNA FD+GF+NA + R Sbjct: 89 IDIYDPERMPEEEGEALRDIFRPIRHEISATGCTRSVMVAHNAHFDLGFVNAAVNRNQIK 148 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ + +RS H AL D+ ++++ ++ Sbjct: 149 RNPFHPFSCFDTSTLAGLAYGQTVLAKACQAAKMDFDNRSAHSALYDAVKTAELFCGIVN 208 Query: 177 GGSQINFGFKTNE 189 + E Sbjct: 209 RWKDLGGWPTETE 221 >gi|324993194|gb|EGC25114.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK405] gi|327461463|gb|EGF07794.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK1] gi|327489318|gb|EGF21111.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK1058] Length = 814 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S N +II+IG V + + T +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-NAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ + A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ + L +LC IS + H AL D+ + +++K+ + Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172 Query: 182 NFGF 185 Sbjct: 173 PKAL 176 >gi|297566007|ref|YP_003684979.1| exonuclease RNase T and DNA polymerase III [Meiothermus silvanus DSM 9946] gi|296850456|gb|ADH63471.1| Exonuclease RNase T and DNA polymerase III [Meiothermus silvanus DSM 9946] Length = 203 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 13/177 (7%) Query: 9 KIV---FDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKN-SPEALKLH 63 ++V D+ET+GL + D+I+ +G V + F + P+ S E L+ H Sbjct: 16 EVVYWALDLETSGLKPQ-DQILSVGMVPIRKGVIRYGEHFYSLVRPHRFDTLSLEGLRAH 74 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFN------EQNAEWIAHNAKFDVGFINAELQRINKDP 117 I L++ P + E +A + + D Sbjct: 75 QIRPFELREAPPLCQVLREVHQRLKEGVLLVHHALVDVAFLRRAYARCDLVWPEPQVVDT 134 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + HP + + + + + + + + H AL D+ +++++ + Sbjct: 135 VKLLHKLGQRRALLEPHPETPPENLAKARAF-LDLPPYTAHHALTDALATAEIFLVL 190 >gi|88797051|ref|ZP_01112641.1| DNA polymerase III subunit epsilon [Reinekea sp. MED297] gi|88779920|gb|EAR11105.1| DNA polymerase III subunit epsilon [Reinekea sp. MED297] Length = 236 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 3/87 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 + DIETTGL+++ D II IG V T + + R + E++ +H IT Sbjct: 48 FVAVDIETTGLNAEQDDIISIGLVPFTAQRITLAKARHWLVR--TRNLTSESVVVHRITH 105 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEW 94 + P ++ SE + Sbjct: 106 SDIAQAPPLRAVLSEVIPCLQGRQVVV 132 >gi|295690334|ref|YP_003594027.1| exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC 21756] gi|295432237|gb|ADG11409.1| Exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC 21756] Length = 297 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 36/118 (30%), Gaps = 6/118 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCPNGRKNSPEALKLHGI 65 D+ETTGLD K IIE+ + + F F P+G PE L GI Sbjct: 45 FVDVETTGLDPKQHEIIELAMIPFRYGLDGVIYEVLEPFHGFRQPSG-PIPPEITALTGI 103 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 D + + + A + +F F + + Sbjct: 104 DDAMVAGQSINPDAVAAAAAPAALIIAHNAGFDRRFLERFCATFTTKPWACSMREVDW 161 >gi|254240149|ref|ZP_04933471.1| exonuclease [Pseudomonas aeruginosa 2192] gi|126193527|gb|EAZ57590.1| exonuclease [Pseudomonas aeruginosa 2192] Length = 201 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 15/179 (8%) Query: 11 VFDIETTGL--------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +FD ETTG+ D I+E+ A+ T F+ + PNG + +PE + Sbjct: 5 IFDFETTGIPEWKLPSEDPCQPHIVEVAALLCDAAGNTIDRFEAIVRPNGWEITPEMTAI 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+ E D + E + N + A AHN FD L R + Sbjct: 65 HGISHEQAMDVGISEAEALEGFLAINGRAARRAAHNISFDDRITRIALMRYQDEDAANAF 124 Query: 121 -----SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 S A+ P ++ + ++ H A+ D+ + +Y + Sbjct: 125 KESGEKFCTCYRSRAQVALPRNKLPTLAEAYKHFTGEDLVEAHRAMPDAQACARIYFAL 183 >gi|77412699|ref|ZP_00788952.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae CJB111] gi|77161250|gb|EAO72308.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae CJB111] Length = 240 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52 +VFD+ETTGL + N+ +I+I A ++ + F F+ P Sbjct: 130 YVVFDVETTGLSAANNDLIQIAASKMFKGNII-EQFDEFIDPGH 172 >gi|251789330|ref|YP_003004051.1| ribonuclease T [Dickeya zeae Ech1591] gi|247537951|gb|ACT06572.1| ribonuclease T [Dickeya zeae Ech1591] Length = 226 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L + + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDATLHFHIEPFEGAILRPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A +AHNA FD F+ A +R Sbjct: 80 IDPTNPLRGAVSEYEALHEIFKSVRKGIKEQDCNRAIIVAHNATFDHSFLMAAAERCGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C I H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACIAADIPFDASQAHSALYDTERTAQLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRMG 205 >gi|238898583|ref|YP_002924264.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466342|gb|ACQ68116.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 221 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 66/186 (35%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L + ++ + P +G PEAL +G Sbjct: 27 VVIDVETAGFNTKTDALLEIAAVTLFMDKEGWLHIEQSMHFHVEPFSGANFEPEALAFNG 86 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ +R Sbjct: 87 IDPHSPLRDAKSEFEVLKKIFKWVQKGMKEQYCKRAIIVAHNAGFDHAFVMNAAKRTGLK 146 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C G+ H AL D+ + ++ +++ Sbjct: 147 QNPFHPFSTFDTAALSGLALGQTVLAKACLTAGLNFDMSRAHSALYDTQQTARLFCELVN 206 Query: 177 GGSQIN 182 ++ Sbjct: 207 RWKRLG 212 >gi|29839853|ref|NP_828959.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC] gi|29834200|gb|AAP04837.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC] Length = 249 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D E TGLD K DRIIE A+ + + + P+ R S E+ ++H I+D Sbjct: 9 FVCLDCEMTGLDVKKDRIIEFAAMRFTFDKVI-DSMETLINPD-RVISAESQRIHRISDA 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97 LKD+P + +F + F E + Sbjct: 67 MLKDQPRIAEVFPKIKSFLKEGDYIVGHS 95 >gi|88802679|ref|ZP_01118206.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii 23-P] gi|88781537|gb|EAR12715.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii 23-P] Length = 1445 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 34/244 (13%), Positives = 74/244 (30%), Gaps = 23/244 (9%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + R ++I + P+G + Sbjct: 2 YLIFDTETTGLPKTWNAPITNTENWPRCVQIAWQLHDKMGNIIEHNDFLIKPDGYNIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A ++HGI+ E +++ + ++ + + N FD+ + E R+ + Sbjct: 62 AERIHGISTELAEEQGISLAEGLLLFNEVLSKTTFIVGQNLNFDLNIMGCEFYRLGVEDK 121 Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169 I + + ++ H A D + Sbjct: 122 MTPLPILDTCTEKTALMCQIPGGRGGKFKLPTLTELHQHLFGAGFGDAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 +++++ K + F K + I +L K+E D+ + + Sbjct: 182 CFLELIRIREFTKEQLKEDVAYFKKYSEANPKPIQVLGLKHINL----KKESDKIRQRLD 237 Query: 230 TLGK 233 L Sbjct: 238 KLKD 241 >gi|290970730|ref|XP_002668233.1| predicted protein [Naegleria gruberi] gi|284081517|gb|EFC35489.1| predicted protein [Naegleria gruberi] Length = 1135 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 76/217 (35%), Gaps = 17/217 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + I+++G + L + F +++ P S A KLH Sbjct: 890 VVLDLETTGLMPNDHEIVQVGMISL----ISKCAFSIYIKPKYHDWSSHAKKLHVDKMNE 945 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + I ++ + N+ N ++ + K L R + +I Sbjct: 946 INNGKQLDQIIIPIHNYLTKNNSCTAVVLVHSTSLDRNFLMKALTKHGLPIDRYMIVNTI 1005 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + P + L +L + ++ +K + D M+ + FG + Sbjct: 1006 SEEFFP--KQKLETLFNQVNKPMNTTTKDIIGVAHDAAFDT--AMLFDIIKHKFGDNIDG 1061 Query: 190 ---------DRFFKEEKKTVPNISLLKRDKPLFTRIT 217 R ++K+ PN + + K T Sbjct: 1062 VLEACMCFHGRLCGDKKRKKPNHDINTKRKKKKTEPN 1098 >gi|197121230|ref|YP_002133181.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K] gi|196171079|gb|ACG72052.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K] Length = 206 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKLHGITDE 68 D+ET GLD + D I+ +G V + + +F + P P +++ H + Sbjct: 21 ALDLETGGLDPRRDAILAVGMVPVRLGSVRLGESFSTLIRPEATAAIDPGSIRAHQLVPH 80 Query: 69 FLKDKP 74 + P Sbjct: 81 DVASAP 86 >gi|56692916|ref|YP_164280.1| exonuclease [Pseudomonas phage F116] gi|48527502|gb|AAT45877.1| exonuclease [Pseudomonas phage F116] Length = 201 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 15/179 (8%) Query: 11 VFDIETTGL--------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +FD ETTG+ D I+E+ A+ T F+ + PNG + +PE + Sbjct: 5 IFDFETTGIPEWKLPSEDPCQPHIVEVAALLCDAAGNTIDRFEAIVRPNGWEITPEMTAI 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+ E D + E + N + A AHN FD L R + Sbjct: 65 HGISHEQAMDVGISEAEALEGFLAINGRAARRAAHNISFDDRITRIALMRYQDEDAANAF 124 Query: 121 -----SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 S A+ P ++ + ++ H A+ D+ + +Y + Sbjct: 125 KESGEKFCTCYRSRAQVALPRNKLPTLAEAYKHFTGEDLVEAHRAMPDAQACARIYFAL 183 >gi|319938082|ref|ZP_08012482.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1] gi|319806988|gb|EFW03627.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1] Length = 221 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 55/169 (32%), Gaps = 4/169 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 I++D+ETTGL + D IIEIGA+ + D + +F P Sbjct: 39 NYIMYDLETTGL-TNKDHIIEIGAIYVEDNTIV-DSFSALCNPGIFITQRIVEITGITNK 96 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 P + + +++ + + N + + K R +DTL Sbjct: 97 MLSDKPPEYDVVKQFVEWCNSKETSLAVGQNINSFDNRMLKVATKRFKLNFPFERSLDTL 156 Query: 128 SIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A + N + H A+ D L ++ + Sbjct: 157 KMAINMKLKEKGLVASNQQSDLGKLYGIEYVAHRAINDVEALYQIFEHL 205 >gi|302346278|ref|YP_003814576.1| exonuclease [Prevotella melaninogenica ATCC 25845] gi|302150299|gb|ADK96560.1| exonuclease [Prevotella melaninogenica ATCC 25845] Length = 163 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 54/167 (32%), Gaps = 7/167 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D ET + + + +G V + +F + P ++HG+T Sbjct: 4 FAAIDFET--ANFERCSVCSVGVVIVRGGEIV-DSFYSLIQPEPNYYHWRCTQVHGLTCA 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P F ++ + +AHNA FD + A D D + + Sbjct: 61 DTDGAPVFCEVWKQIEPMIEG--LPLVAHNASFDKSCLKASFYTYQMDYPDYEFLDTLKA 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + L ++ G H AL D+ + + +++ Sbjct: 119 ARRHFPHLPDHQLQTVSSACGYE--LTDHHHALADAEACAWIAREIL 163 >gi|332291057|ref|YP_004429666.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332169143|gb|AEE18398.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 458 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 66/175 (37%), Gaps = 7/175 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + + ++ F + P R + L GI + Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKFDGHQVVDQ-FITLVNPE-RPIQAFVVGLTGINNG 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P F I + + +AHNA+FD ++ L+ + ++ Sbjct: 60 MLTDAPKFHEIAKRIIE--ITEGCIIVAHNAQFDYRILS--LEFDRLGYPYERTTLCSVE 115 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +++ P + + + I+ ++H A D+ ++ ++ + Sbjct: 116 LSQELLPGHDSYSLGKLTKT-LGIAMSNRHRADGDAIATVKLFKLLLEKDPEKTI 169 >gi|261838819|gb|ACX98585.1| DNA polymerase III epsilon subunit [Helicobacter pylori 51] Length = 323 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 111 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 168 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 213 >gi|110637752|ref|YP_677959.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC 33406] gi|110280433|gb|ABG58619.1| DNA polymerase III epsilon subunit [Cytophaga hutchinsonii ATCC 33406] Length = 283 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 5/159 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 FD+ETTG++ DRIIEI V + D +TF+ + P G ++ +HGI D+ Sbjct: 24 FFDLETTGVNISTDRIIEICIVRVSPPDEKVEVKTFR--VNP-GMPIPDQSSAIHGIYDK 80 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + DKP+F+ I + F + + I + + + +++D+ Sbjct: 81 DVADKPTFTEIAHQINQFMKDCDLGGFNSIRFDIPLLIEEFFRAGIEFDITKRKLVDSQR 140 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 I P + + +H ++ L ++L Sbjct: 141 IFHLMEPRTLGAAYKFYCNKDLENAHSAEADTLATYYIL 179 >gi|325269989|ref|ZP_08136598.1| exonuclease [Prevotella multiformis DSM 16608] gi|324987712|gb|EGC19686.1| exonuclease [Prevotella multiformis DSM 16608] Length = 163 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 7/167 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D ET + + + +G V + TF + P +++HG+T Sbjct: 4 FAAIDFET--ANFERCSVCSVGVVIVRGGEIV-DTFYSLIQPEPNYYHWRCVQVHGLTCA 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 D P FS ++ +AHNA FD G + A D D + Sbjct: 61 DTDDAPVFSEVWKVIEPMIEG--LPLVAHNAPFDKGCLKAAFYTYQMDYPDYEFFDTLKA 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 RR + L ++ G + H AL D+ + + +++ Sbjct: 119 ARRRLPDLPDHQLQTVAAECG--YDLSNHHHALADAEACAWIAREIL 163 >gi|322822112|gb|EFZ28257.1| exonuclease, putative [Trypanosoma cruzi] Length = 271 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 7/75 (9%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-------NRTFQVFLCPNGRKNSPEA 59 M I D+ETTG ++ D I+ IGAVEL T R+F + P+ + Sbjct: 49 MSAICVDLETTGFSAQCDDIVSIGAVELRWDGTTLQQWVLGARSFFRTVRPSKPSSHQAE 108 Query: 60 LKLHGITDEFLKDKP 74 + P Sbjct: 109 AVHGLSFEMLRDAPP 123 >gi|125717716|ref|YP_001034849.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK36] gi|125497633|gb|ABN44299.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit, putative [Streptococcus sanguinis SK36] Length = 814 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V + + T +T++ + P+ + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EDLDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ + A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ + L +LC IS + H AL D+ + +++K+ + Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172 Query: 182 NFGF 185 Sbjct: 173 PKAL 176 >gi|108563906|ref|YP_628222.1| DNA polymerase III subunit epsilon [Helicobacter pylori HPAG1] gi|107837679|gb|ABF85548.1| DNA polymerase III epsilon subunit [Helicobacter pylori HPAG1] Length = 323 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 111 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 168 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 213 >gi|306823007|ref|ZP_07456383.1| epsilon subunit family exonuclease [Bifidobacterium dentium ATCC 27679] gi|304553639|gb|EFM41550.1| epsilon subunit family exonuclease [Bifidobacterium dentium ATCC 27679] Length = 186 Score = 55.3 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 8/175 (4%) Query: 12 FDIETTGLDS-KNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITDEF 69 D ETTGL + IIEIGA+ + ++ R F+ + P R +L GI+D Sbjct: 2 LDTETTGLHPEEGATIIEIGALLVTPGNENARPRFEQLVDPQ-RPLPEFISRLTGISDGM 60 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124 L++KP+ + F + ++ IAHNA+FD+GF++A + + D + Sbjct: 61 LRNKPTADAAMLRFHQWLDDVWPAGRPLTVIAHNAEFDIGFLDAAERAHDPDANEFDCRW 120 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + + I +H AL D+ +Y + S Sbjct: 121 LCTKEMSWELNPQKRHHRVSDLIVDYRIGDVEEHRALSDAIQEQMIYRALCREAS 175 >gi|253580938|ref|ZP_04858200.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847780|gb|EES75748.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 319 Score = 55.3 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 65/217 (29%), Gaps = 10/217 (4%) Query: 7 MRKIVFDIE----TTGLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M IVFD+E +G ++NDR IIEIGAV++ + F + P K + Sbjct: 1 MNYIVFDLEWNQNPSGKKTRNDRLPFEIIEIGAVKVNSKKEITDHFHRLIKPQVYKWIHD 60 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 ++ H + KD +F + +W + Sbjct: 61 SI--HEVIHVDYKDLMKGVPFEQAVREFIDWCGEDWYFFTWGNQDVMELQRNMKFYGLLD 118 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + + + S + + + I K + + K++ Sbjct: 119 LLPGPVTYYDVQKLYSISYDDGTHRCALEHAIDELKIEKSRGFHRALADAWYTAKVLEKI 178 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 + I + D + +KK +R Sbjct: 179 NNIIIINHPSLDVYQNPKKKKDEIHISYPDHDKYVSR 215 >gi|27904678|ref|NP_777804.1| ribonuclease T [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29611836|sp|P59497|RNT_BUCBP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|27904075|gb|AAO26909.1| ribonuclease T [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 217 Score = 55.3 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 73/186 (39%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRT--FQVFLCP-NGRKNSPEALKLHG 64 +V DIET G + + D I+EI + ++ ++ + + P G + +A++ HG Sbjct: 20 VVIDIETAGFNPETDAILEIAIITLKMNEFGLLEKEHLLHFHIQPFKGSRIDKKAIEFHG 79 Query: 65 ITDE--------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + S ++ + N + +AHNA FD F+ A + R Sbjct: 80 IDPFSPLRRAISEYEALYSIFNLIHKGIKSNNCTKSIIVAHNAIFDYNFLTAAITRTKIK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L CK G+T + H AL D+ ++++ K++ Sbjct: 140 NNPFHSFVIFDTATLSGLAVGQTVLARACKAIGLTFDNNQAHSALYDTQQTANLFCKIVN 199 Query: 177 GGSQIN 182 + Sbjct: 200 RWKTLG 205 >gi|269837944|ref|YP_003320172.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter thermophilus DSM 20745] gi|269787207|gb|ACZ39350.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter thermophilus DSM 20745] Length = 197 Score = 55.3 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 66/186 (35%), Gaps = 13/186 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+R+ + D ETTGLD I+EI V+ + P R PE Sbjct: 18 MLRRRD--VLFLDTETTGLD-GQAEIVEIAVVDAQGTVL----LDTLVRP-LRPIPPEVQ 69 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGITD + P + + +E + + +NA FD I Q+ P Sbjct: 70 AIHGITDRMVAGAPRWPEVHAELV-RLFRERPRAVVYNAAFDRRVIAQTAQQHCLPPPTA 128 Query: 121 SRIIDTLSIA----RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 L A R + + + L + R H AL D+ + V M Sbjct: 129 EWHCAMLRYAAYAGERHPVTGKYRWHRLDRAAAALGIPRPTHRALGDALVCRGVVAAMAG 188 Query: 177 GGSQIN 182 G ++ Sbjct: 189 LGGRLG 194 >gi|330804902|ref|XP_003290428.1| hypothetical protein DICPUDRAFT_154946 [Dictyostelium purpureum] gi|325079439|gb|EGC33039.1| hypothetical protein DICPUDRAFT_154946 [Dictyostelium purpureum] Length = 175 Score = 55.3 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 4/40 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50 D ETTGL D IIE+ ++L D F + P Sbjct: 32 FLDTETTGLSVATDEIIEVSIIDLYD----GSHFYKLINP 67 >gi|213962688|ref|ZP_03390949.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena Capno] gi|213954683|gb|EEB66004.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena Capno] Length = 442 Score = 55.3 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 7/175 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + ++ T++ F + P R KL GI ++ Sbjct: 2 YAILDIETTGGKYDEEGITEIAIYQFDGHTITDQ-FISLINPE-RPIQDYVTKLTGINNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ P F I + + + HNA FD + E +R+ + + + LS Sbjct: 60 MLRNAPKFYEIAKRIVE--ITEGCIIVGHNAAFDYRILQTEFRRLGYEYIKTTLCTVELS 117 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 S + + I +H A D+ +++ ++ ++ + Sbjct: 118 QQLIPDKESYSL---GKLVRSLGIPMSERHRASGDAMATLNLFKYLLEKDTKKSI 169 >gi|298737180|ref|YP_003729710.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8] gi|298356374|emb|CBI67246.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8] Length = 323 Score = 55.3 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 111 FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 168 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 213 >gi|42524627|ref|NP_970007.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100] gi|39576837|emb|CAE78066.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100] Length = 276 Score = 55.3 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 6/168 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD ET+G ++E GAV+ + R Q P + + +HGIT+E Sbjct: 12 YVAFDTETSGAYPVGHDVVEFGAVKWYKGEEVGR-LQFLFKP-REPMTDFIIGIHGITNE 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P + E +FF A +AH+A FD+GF+ + ++ L + +L Sbjct: 70 MVADAPLITEKIREIHEFFKG--AIVMAHHAPFDLGFMAIDFEKNQLPLLPEPALCTSLL 127 Query: 129 IARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKM 174 + H + L +L + I +HR+ A H+ + KM Sbjct: 128 SRKWIHGVENHKLQTLVRHLNIDGGQAHRAYDDAKACLHVGLACFAKM 175 >gi|295677334|ref|YP_003605858.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] gi|295437177|gb|ADG16347.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] Length = 382 Score = 55.3 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + RI E+G VE+ + + + P + +L GIT++ Sbjct: 16 VFVDLETTGGSTSEHRITEVGVVEVGPAGVS--RWSSLVDPQ-QPIPSFIQQLTGITNDM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 ++ P+F SI ++ N ++AHNA FD GF+ +E + Sbjct: 73 VRGAPTFESIAPALFERLNG--KLFVAHNASFDRGFLRSEFR 112 >gi|302879827|ref|YP_003848391.1| Exonuclease RNase T and DNA polymerase III [Gallionella capsiferriformans ES-2] gi|302582616|gb|ADL56627.1| Exonuclease RNase T and DNA polymerase III [Gallionella capsiferriformans ES-2] Length = 234 Score = 55.3 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ 45 R +V D+ET+GL+ DR+I IGAV +++ +F Sbjct: 41 RCVVVDVETSGLNLWEDRLISIGAVAVVNGKIELGDSFY 79 >gi|320330625|gb|EFW86603.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4] Length = 237 Score = 55.3 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 24/200 (12%), Positives = 68/200 (34%), Gaps = 6/200 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ET+GL+ D+++ +GAV + D + + F+ L + + + + Sbjct: 42 RWVVLDLETSGLNMNRDQVLSMGAVVIEDGAIDLGQQFERTLLRVDHKISPAVLIHGLAP 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +P + + ++ + +A FD ++ L+ L Sbjct: 102 SAIAAGSEPVEALLDFME----FVGDSPILGFHAPFDQHMLSRALKESLGYRLQHPFFDA 157 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++ + +H A D+ + +++ + + + Sbjct: 158 AEIAPMLCEHANLRHAGLDDWTRFFGLHAEERHHASADALVTAELALILFSDARRQQIDS 217 Query: 186 KTNEDRFFKEEKKTVPNISL 205 + + ++ + S Sbjct: 218 PLRLEEALGQWRRRRQSHSF 237 >gi|320322651|gb|EFW78744.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076] gi|320330564|gb|EFW86543.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4] Length = 204 Score = 55.3 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 3/168 (1%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + FQ + G + L GI+ Sbjct: 4 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIV-ELFQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF + + ++ ++ Sbjct: 62 NNMIRTAPSAERVMGDVADFVGATPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLLA 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L S + +HR+ A + ++L + + ++ Sbjct: 122 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 169 >gi|260102659|ref|ZP_05752896.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260083529|gb|EEW67649.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 249 Score = 55.3 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 1/94 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIETTGLD D+II IGAV+ + SK R F + + + + +++ Sbjct: 128 VALDIETTGLDITKDQIISIGAVKYISKSKCER-FYRLIKTDYEIPTHISKITQLTSEKL 186 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103 + + F ++ N + Sbjct: 187 NQSGIELFDALEDLKKFLADRLIVGYNLNFDINF 220 >gi|146301193|ref|YP_001195784.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] gi|146155611|gb|ABQ06465.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] Length = 453 Score = 55.3 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 7/212 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + + ++ F + P P +KL GI + Sbjct: 2 YAILDIETTGGQFNEEGITEIAIYKFDGHEVVDQ-FISLVNPE-IPIQPFVVKLTGINNA 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + + + +AHNA FD + E +R+ D + L+ Sbjct: 60 MLRSAPKFYEVAKRIIE--ITTDCVIVAHNASFDYRILRTEFRRLGYDFEAKTLCTVELA 117 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + + I +H A D+ + ++ ++ + Sbjct: 118 KKLIPEQPSYSL---GKLVRALGIPMADRHRASGDAMATTKLFKMLLEKDVEKTIVKDFI 174 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + K +I K I KE+ Sbjct: 175 KLEVEKGISPKFLDIVNQMPAKTGVYYIYKED 206 >gi|163756168|ref|ZP_02163283.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] gi|161323780|gb|EDP95114.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] Length = 454 Score = 55.3 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 7/187 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + ++ F + P R+ P + L GI Sbjct: 2 YAIVDIETTGGKYNEEGITEIAIYRFDGHEVVDQ-FISLVNPE-REIQPFVVNLTGINSR 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P F + + ++ +AHNA FD + E +R+ + S LS Sbjct: 60 MLRDAPKFYEVAKRIVE--ITEDCIIVAHNASFDYRILQLEFKRLGFEYKRKSLCTVELS 117 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + I +H A D+ ++ ++ S+ N + Sbjct: 118 KKLIPEMESYKL---GKLVRALGIPMSDRHRASGDALATVKLFQLLLDKDSEKNIIQQAV 174 Query: 189 EDRFFKE 195 + K+ Sbjct: 175 KTEIKKK 181 >gi|87118535|ref|ZP_01074434.1| exonuclease [Marinomonas sp. MED121] gi|86166169|gb|EAQ67435.1| exonuclease [Marinomonas sp. MED121] Length = 230 Score = 55.3 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 52/175 (29%), Gaps = 6/175 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTGLD+ DR+I +G V + + K + + L + + + +H ITD Sbjct: 38 YLVLDMETTGLDATKDRVISLGWVLIKNGAIKLSSARHILL--DNGPVDEKTVAIHMITD 95 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + S+ + + H + Sbjct: 96 QDISELGRNPSVAMRYLRQLLLDKVLVVHHAPIEQAFLEKLWQAHKLNPLTQVMLDTLAM 155 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL---DSHLLSDVYIKMMVGGS 179 + ++ + D+ +++ + + Sbjct: 156 ERDTQMRKQYMLTSDAFRLGECRKRYGLPDYQGHDALGDAQATAELLLAQLNHAG 210 >gi|312128938|ref|YP_003996278.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella byssophila DSM 17132] gi|311905484|gb|ADQ15925.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella byssophila DSM 17132] Length = 303 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 74/215 (34%), Gaps = 10/215 (4%) Query: 7 MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M + D ET T ++ D EIG + D T + P + + +HGI Sbjct: 1 MEFVTIDFETAT---AQRDSPCEIGLTFVQDGQII-DTKSWLIKPMYDEFDYFNILIHGI 56 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 E + DKP F+ ++SE + IAHNA FD+ + L+ + Sbjct: 57 RPEHVADKPEFNELWSEIKPLVENKF--LIAHNAGFDISVLRRTLEAYQLPFPTLNYSCS 114 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + + DL +LCK + H A DS +++ +K + Sbjct: 115 YIFSKKVWQGLPAYDLKTLCKVNN---INLKHHRAGADSKATAELTLKAFEIAGVSSIDD 171 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + + + + +TK E Sbjct: 172 FPEKLKTTVGQLYNGGYKPAETKRIYKAKDLTKIE 206 >gi|227488080|ref|ZP_03918396.1| DNA polymerase III epsilon subunit (exonuclease) [Corynebacterium glucuronolyticum ATCC 51867] gi|227091942|gb|EEI27254.1| DNA polymerase III epsilon subunit (exonuclease) [Corynebacterium glucuronolyticum ATCC 51867] Length = 427 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 6/174 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + + D ET + + +I V++ +R F L P + E HGI+ Sbjct: 253 KFVAVDFET--ANRSSRSACQIAMVKVEYGQIVDR-FSTLLKPPPGHDEFEFTYFHGISA 309 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D PS+ + F AHNA FD G + L Sbjct: 310 RDVADAPSWKFVEPYIRAFV--DRLPVYAHNASFDRGVWVSMDSYYGTRTLPEEFYCSYR 367 Query: 128 SIARRKHPSSRNDLNSLCKRYG-ITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + R L ++ K + + ++ L + ++M+ S+ Sbjct: 368 TAKRLIPGLENYKLPTVTKAIAPWFRLDHHRADSDAEACALIVIGLQMLESYSE 421 >gi|288818861|ref|YP_003433209.1| exonuclease [Hydrogenobacter thermophilus TK-6] gi|288788261|dbj|BAI70008.1| exonuclease [Hydrogenobacter thermophilus TK-6] gi|308752448|gb|ADO45931.1| Exonuclease RNase T and DNA polymerase III [Hydrogenobacter thermophilus TK-6] Length = 216 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPN 51 +V D ETTGLD K D I IGA+++ D +++F + P Sbjct: 42 FVVCDTETTGLDLKKDEPIAIGALKVKDLCIDLSQSFYRLIKPQ 85 >gi|197285252|ref|YP_002151124.1| ribonuclease T [Proteus mirabilis HI4320] gi|227355678|ref|ZP_03840072.1| exoribonuclease T [Proteus mirabilis ATCC 29906] gi|194682739|emb|CAR42945.1| ribonuclease T [Proteus mirabilis HI4320] gi|227164285|gb|EEI49178.1| exoribonuclease T [Proteus mirabilis ATCC 29906] Length = 212 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 72/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + K + T + P G P AL+ G Sbjct: 20 VVIDVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVDPFEGANLEPAALEFTG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + N A +AHNA FD F+ A +R Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKMVRKGMKDANCNRAIIVAHNANFDHSFVMAAAERAGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI + HGAL D++ S ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTILAKACITAGIPFDSKLAHGALYDTNRTSLLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKKLG 205 >gi|313674243|ref|YP_004052239.1| exonuclease RNAse t and DNA polymerase iii [Marivirga tractuosa DSM 4126] gi|312940941|gb|ADR20131.1| Exonuclease RNase T and DNA polymerase III [Marivirga tractuosa DSM 4126] Length = 267 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTG + NDRI+E V+++ D T + P R E+ +HGI D+ Sbjct: 10 VIFDLETTGTNVVNDRIVEYSFVKVMPDGDVIKNT--EKVNPE-RPIPLESSLIHGIYDK 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIA 96 +KDKP+F ++ E F + + Sbjct: 67 DVKDKPTFKAMAKELSSFLHGCDLAGFN 94 >gi|92114250|ref|YP_574178.1| ribonuclease T [Chromohalobacter salexigens DSM 3043] gi|122419726|sp|Q1QVM9|RNT_CHRSD RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|91797340|gb|ABE59479.1| RNAse T [Chromohalobacter salexigens DSM 3043] Length = 221 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 67/202 (33%), Gaps = 15/202 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-----------NGRK 54 +V D+ET G +++ D ++EI AV L + T + P + Sbjct: 20 VVVDLETGGFNAQRDALLEIAAVTLTMDAQGNLMPDDTHAFHVRPFEGANIEQAALDFTG 79 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 ++ + + A + HNA FD GF+NA ++R Sbjct: 80 IDLDSPLRQQVALSEHDALGEIFKPVRKAIKANQCTRAILVGHNAAFDQGFLNAAVERNG 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + L C+ GI + S H A D+ ++++ M Sbjct: 140 IKRNPFHPFSCFDTATLGGLVYGQTVLARACRAAGIEFDNASAHSARYDTERTAELFCAM 199 Query: 175 MVGGSQINFGFKTNEDRFFKEE 196 + + +++ E+ Sbjct: 200 VNRYKNLGGWDLALKEQGMDED 221 >gi|68248930|ref|YP_248042.1| ribonuclease T [Haemophilus influenzae 86-028NP] gi|81336659|sp|Q4QNL5|RNT_HAEI8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|68057129|gb|AAX87382.1| ribonuclease T [Haemophilus influenzae 86-028NP] Length = 229 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G D+K D ++E+ A+ L Y ++ + P G +PE+LK +G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + Q + +AHNA FD F+ A +R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAERTGVK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L C+ I + H AL D+ + ++ M+ Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQAAKIPFDGKQAHSALYDTERTAKLFCYMVN 202 Query: 177 GGSQIN 182 + Sbjct: 203 HLKDLG 208 >gi|145628675|ref|ZP_01784475.1| ribonuclease T [Haemophilus influenzae 22.1-21] gi|145638764|ref|ZP_01794373.1| ribonuclease T [Haemophilus influenzae PittII] gi|144979145|gb|EDJ88831.1| ribonuclease T [Haemophilus influenzae 22.1-21] gi|145272359|gb|EDK12267.1| ribonuclease T [Haemophilus influenzae PittII] gi|309750254|gb|ADO80238.1| Ribonuclease T [Haemophilus influenzae R2866] Length = 229 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G D+K D ++E+ A+ L Y ++ + P G +PE+LK +G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + Q + +AHNA FD F+ A +R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRRQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L C+ I + H AL D+ + ++ M+ Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQAAKIPFDGKQAHSALYDTERTAKLFCYMVN 202 Query: 177 GGSQIN 182 + Sbjct: 203 HLKDLG 208 >gi|297194325|ref|ZP_06911723.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] gi|297152225|gb|EFH31608.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] Length = 658 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 9/175 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ET+GL ++ DR++ + V + D ++T F L P P + +HG+T E L Sbjct: 23 VDVETSGLVARRDRVLSVAVVTVGPDGAQTGE-FSTLLDPG---CDPGPVHVHGLTAERL 78 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P+F + +AHNA+FD F+ E R R+ Sbjct: 79 HGAPAFEEVAQRISQMLEG--RVLVAHNAQFDYDFLAHEFARAGVSLPVARRLCTLALNR 136 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 R P+ L +L YG+ H AL D+ +L+ V + ++++ Sbjct: 137 RVDPPTQDLRLGTLAAHYGVP--QLRAHDALDDTRVLAGVLRASLREAARLDLRL 189 >gi|85713183|ref|ZP_01044214.1| 3'-5' exonuclease [Idiomarina baltica OS145] gi|85693007|gb|EAQ30974.1| 3'-5' exonuclease [Idiomarina baltica OS145] Length = 217 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 52/182 (28%), Gaps = 6/182 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNR-TFQVF-LCPNGRKNSPEALKLHGI 65 I DIETTGLD ND+I+ I V + + F + P+ + Sbjct: 29 YIAIDIETTGLDPINDQILSIAWVPIKPPMILIGEAQYHEFCVDPDVDLQQSPTIHGLTK 88 Query: 66 TDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 K + + + + + + D S Sbjct: 89 AQLSSGGDVKKVLKDLEDKLYGCVMVCHHRSLDWSYLRDNRLTENLHFEPLGVFDTLSFE 148 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + +S + + + C+ + H A+ D+ +++++ N Sbjct: 149 KNKMSFDNEFQLHNSSLTLAACRTRHGLPI-YTSHHAMDDAIACAELFLAQATKIKPHNE 207 Query: 184 GF 185 Sbjct: 208 KL 209 >gi|330446342|ref|ZP_08309994.1| exonuclease family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490533|dbj|GAA04491.1| exonuclease family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 249 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL++ D II +G V + ++ + P + E++ +HGIT Sbjct: 59 FVALDFETTGLNANKDDIISVGLVPFTIHRIYCKQSQHWVVKPKSK-LDEESVIIHGITH 117 Query: 68 EFLKDKP 74 ++ P Sbjct: 118 SDVQTAP 124 >gi|153829541|ref|ZP_01982208.1| ribonuclease T [Vibrio cholerae 623-39] gi|148875001|gb|EDL73136.1| ribonuclease T [Vibrio cholerae 623-39] Length = 243 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 72/203 (35%), Gaps = 14/203 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L T + P G AL+ G Sbjct: 39 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD F+ A +R Sbjct: 99 IYDPFSPLRGAVSEDHALKEIYRLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 159 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 218 Query: 176 VGGSQINFGFKTNEDRFFKEEKK 198 + N+D + + Sbjct: 219 NQWKALGGWPLVNDDEDYNNDAD 241 >gi|269102313|ref|ZP_06155010.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268162211|gb|EEZ40707.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 242 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+SK D I+ IG + + + + + P R + E++ +HGIT Sbjct: 52 FVALDFETTGLNSKTDDIVSIGLIPFTIHRIYSKQAQHWVVKPK-RPLAEESVVIHGITH 110 Query: 68 EFLKDKPSFSSIFSEFWDFF 87 ++ P I + D Sbjct: 111 SDIQAAPDLRRILDQVLDAL 130 >gi|153836296|ref|ZP_01988963.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810] gi|149750571|gb|EDM61316.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810] Length = 247 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 68/180 (37%), Gaps = 17/180 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+++ D I+ IG V +D + + + + PN R+ + E++ +HGITD Sbjct: 57 FVSVDFETTGLNAEEDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITD 115 Query: 68 EFLKDKPSFSSIFSE------------FWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 +K+ P + I E + Q N + + Sbjct: 116 SEVKNAPQLTQILGEILDALAGKVVLVHYKNIERQFFYNALLNTIGEGIQFPVVDTLDIE 175 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L + + K P S ++ + + H AL D+ ++++ + Sbjct: 176 YALQRRECSGIWNKLKGKKPGSVRLGHARERYG---LPAYQPHHALTDALATAELFQAQL 232 >gi|91792755|ref|YP_562406.1| ribonuclease T [Shewanella denitrificans OS217] gi|123356922|sp|Q12PE3|RNT_SHEDO RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|91714757|gb|ABE54683.1| RNAse T [Shewanella denitrificans OS217] Length = 226 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 73/206 (35%), Gaps = 13/206 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++ D ++EI +++ D ++T + P G PEAL +G Sbjct: 20 VVIDVETAGFNANTDALLEIAVTLLKMNDDGILVLDKTVHFHIEPFEGANLEPEALAFNG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + +AHNA FD+ F+N ++R + Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKTVKKGQKASDCHRSIIVAHNAAFDLSFVNKAIERNDLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L CK GI ++ H AL D+ ++++ ++ Sbjct: 140 RSPFHPFASFDTATLAGLSIGHTVLAKACKMAGIDFDNKEAHSALYDTERTAELFCHIVN 199 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 + ++ E Sbjct: 200 RWKALGGWPLATPEQSAIENTDEKIE 225 >gi|319777750|ref|YP_004137401.1| DNA polymerase iii alpha subunit [Mycoplasma fermentans M64] gi|318038825|gb|ADV35024.1| DNA polymerase III alpha subunit [Mycoplasma fermentans M64] Length = 1461 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 2/188 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FDIETTGL + IIE G++ + K R Q F+ Sbjct: 426 YVSFDIETTGLCPRFAVIIEYGSLPIHSNMKYGRKTQFFIKCQEPIKPFTENLTGITNAM 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 K + ++ N +AHNA+FD F+ + ++ + + + I + Sbjct: 486 IEKSGLELKEALQKIYNDLNG--KIALAHNARFDFNFLKEKFRQAKIEFPNVTVIDTLIV 543 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + ++ L + R G+ H D+ +L++V++ +M + Sbjct: 544 SRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDYDAKVLAEVWVALMDELGKKGILTFNQ 603 Query: 189 EDRFFKEE 196 + + K++ Sbjct: 604 LNSYIKDD 611 >gi|330903518|gb|EGH34090.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. japonica str. M301072PT] Length = 147 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 3/144 (2%) Query: 35 LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW 94 + T R F V+L P+ R++ A+ +HGIT+EFL KP F+ + EF++F Sbjct: 1 IGRRLTGRHFHVYLQPD-RESDEGAIGVHGITNEFLVGKPRFAEVADEFFEFIKGAQLII 59 Query: 95 --IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152 A + F + D ++DTL +AR +HP RN L++LCKRYG+ Sbjct: 60 HNAAFDVGFINNEFALMGSQDRADITQHCSVLDTLMMARERHPGQRNSLDALCKRYGVDN 119 Query: 153 SHRSKHGALLDSHLLSDVYIKMMV 176 S R HGALLDS +L+DVY+ M Sbjct: 120 SGRELHGALLDSEILADVYLAMTG 143 >gi|77359544|ref|YP_339119.1| DNA polymerase [Pseudoalteromonas haloplanktis TAC125] gi|76874455|emb|CAI85676.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas haloplanktis TAC125] Length = 207 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 7/172 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K R +V D+E TGLD+K I+ + V + + Q + + + + HGI Sbjct: 22 KQRYLVIDLELTGLDAKQHEIVSLAWVVIENQCIKMSQSQHLINKEVKNLAQSPVY-HGI 80 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRII 124 ++ + S SI + FN+ + HNA D GF+ L+ Sbjct: 81 NNDNVAAGQSLHSILEHLSEHFND--CILVFHNAMLDWGFLKPALKNANITTRPKLILCT 138 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL---DSHLLSDVYIK 173 + R +H + L + D+ +++++ Sbjct: 139 LQIEKKRLQHQGVEIKQDDLTLNECRNRYELPSYHCHHALTDAQATAELFLA 190 >gi|16272277|ref|NP_438489.1| ribonuclease T [Haemophilus influenzae Rd KW20] gi|260581209|ref|ZP_05849028.1| ribonuclease T [Haemophilus influenzae RdAW] gi|1173107|sp|P44639|RNT_HAEIN RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|1573293|gb|AAC21987.1| ribonuclease T (rnt) [Haemophilus influenzae Rd KW20] gi|260092134|gb|EEW76078.1| ribonuclease T [Haemophilus influenzae RdAW] Length = 229 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G D+K D ++E+ A+ L Y ++ + P G +PE+LK +G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + Q + +AHNA FD F+ A +R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L C+ I + H AL D+ + ++ M+ Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQAAKIPFDGKQAHSALYDTERTAKLFCYMVN 202 Query: 177 GGSQIN 182 + Sbjct: 203 HLKDLG 208 >gi|257094710|ref|YP_003168351.1| Exonuclease RNase T and DNA polymerase III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047234|gb|ACV36422.1| Exonuclease RNase T and DNA polymerase III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 469 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 8/171 (4%) Query: 14 IETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDK 73 +ETTG + DRI +IG +E + T+ + P R +L+G D + D Sbjct: 11 LETTGANPLRDRITKIGVLEAEGDRVS--TWSTLVNPQ-RPIPEFIQQLNGSRDATVADA 67 Query: 74 PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK 133 P+F+ + +E D + + + + + + ++ T+ ++R+ Sbjct: 68 PTFAQVAAELADRLHGRLFIA----HHARFNYAFVKREFQRLGKSFRADVLCTVRLSRKL 123 Query: 134 HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 P + + GAL +HLL + + + Sbjct: 124 FPEHQKHHLESLMVRHDL-TTGVHSGALAAAHLLGQFWCVLKRERGEEALA 173 >gi|238810189|dbj|BAH69979.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 1467 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 2/188 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FDIETTGL + IIE G++ + K R Q F+ Sbjct: 432 YVSFDIETTGLCPRFAVIIEYGSLPIHSNMKYGRKTQFFIKCQEPIKPFTENLTGITNAM 491 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 K + ++ N +AHNA+FD F+ + ++ + + + I + Sbjct: 492 IEKSGLELKEALQKIYNDLNG--KIALAHNARFDFNFLKEKFRQAKIEFPNVTVIDTLIV 549 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + ++ L + R G+ H D+ +L++V++ +M + Sbjct: 550 SRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDYDAKVLAEVWVALMDELGKKGILTFNQ 609 Query: 189 EDRFFKEE 196 + + K++ Sbjct: 610 LNSYIKDD 617 >gi|311110686|ref|ZP_07712083.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri MV-22] gi|311065840|gb|EFQ46180.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri MV-22] Length = 937 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 9 KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++ D II+ G + +T+ + P+ R+ L I++ Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKKRKVV-KTYSFLINPH-REIPQAVENLTHISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 + F+ + N Sbjct: 68 RDVAQARDFNYYAPKIRKILENTIFVAHNVNF 99 >gi|116629671|ref|YP_814843.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323] gi|238854243|ref|ZP_04644587.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri 202-4] gi|116095253|gb|ABJ60405.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323] gi|238833054|gb|EEQ25347.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri 202-4] Length = 937 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 9 KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++ D II+ G + +T+ + P+ R+ L I++ Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKKRKVV-KTYSFLINPH-REIPQAVENLTHISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 + F+ + N Sbjct: 68 RDVAQARDFNYYAPKIRKILENTIFVAHNVNF 99 >gi|153839656|ref|ZP_01992323.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810] gi|260900787|ref|ZP_05909182.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|149746830|gb|EDM57818.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810] gi|308106848|gb|EFO44388.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] Length = 239 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+ + II IG V + P +K +++ +HGIT Sbjct: 49 FVALDFETTGLNPEKHDIITIGLVPFNLRRIFLRDARHWKVRPQ-KKLDEDSVIIHGITH 107 Query: 68 EFLKDKP 74 L D P Sbjct: 108 SELIDAP 114 >gi|149377478|ref|ZP_01895220.1| exonuclease [Marinobacter algicola DG893] gi|149358245|gb|EDM46725.1| exonuclease [Marinobacter algicola DG893] Length = 236 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP 57 R IV D+ETTGL+ D +I IGAV + + + F + L S Sbjct: 40 RLIVLDLETTGLNPAKDNVIAIGAVAIRHNAIDLSDQFDLILRRPELDISE 90 >gi|27365569|ref|NP_761097.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6] gi|37680285|ref|NP_934894.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016] gi|320155964|ref|YP_004188343.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O] gi|27361717|gb|AAO10624.1| DNA polymerase III epsilon subunit [Vibrio vulnificus CMCP6] gi|37199032|dbj|BAC94865.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016] gi|319931276|gb|ADV86140.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O] Length = 238 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+ I+ IG V + + + P + + E++ +HGIT Sbjct: 49 VALDFETTGLNPNQHDILSIGLVPFDLHRIRLQQARYWTVKPEDQLH-EESVVIHGITHS 107 Query: 69 FLKDKPSFSSIFSEFWDFF 87 ++ P + E D Sbjct: 108 KVQRAPDLIDVLDEVLDCL 126 >gi|332885444|gb|EGK05693.1| hypothetical protein HMPREF9456_02495 [Dysgonomonas mossii DSM 22836] Length = 256 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 64/190 (33%), Gaps = 8/190 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTG D+ DRI+E+ +++ + + +T + P A +HGI+DE Sbjct: 10 IFFDLETTGTDTVKDRIVELSYLKVYPNGKEEMKT--RRINPE-MPIPAGATAIHGISDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P+F I D + + L+ ++ID Sbjct: 67 DVKDCPTFKQIAKSLADQMEGCDLAGFNSSRFDIPLLAEEFLRADVDIDFSKRKMIDVQI 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I + ++ + H A D+ +V + + + Sbjct: 127 IFHK----KEQRTLEAAYKFYCDKDLDNAHSAEADTLATYEVLKAQLDKYPDLENDMEKL 182 Query: 189 EDRFFKEEKK 198 F Sbjct: 183 AAEFSFFNNN 192 >gi|59713532|ref|YP_206307.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) [Vibrio fischeri ES114] gi|59481780|gb|AAW87419.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) [Vibrio fischeri ES114] Length = 259 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 51/178 (28%), Gaps = 8/178 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62 N M V D ET+GL+ K D I+ +G V ++D + + ++ + + Sbjct: 61 SNDMAFTVVDFETSGLNPKTDHIVSVGWVHIIDGVIKLSSAQHHIINEPTSISAEDGHEE 120 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK------- 115 L + E + N G + Sbjct: 121 REHIARSLHHILPEQQKMGISLEEAMECFFSNLPSNILVVHGATIEQRFLEQFILSLQLP 180 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + + + D R + H AL+D+ +++++ Sbjct: 181 NLPIIWLDTLRIEQNTIQQNRYQRDFRLFSLRRQYKLPDYPAHHALVDAISTAELFLA 238 >gi|325128513|gb|EGC51390.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis N1568] Length = 470 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+IE+ V+ + + P + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVIEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + +AHN++FD F+ + S + + Sbjct: 85 DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRVGIGFSSPALCS 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192 >gi|82751054|ref|YP_416795.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122] gi|123549199|sp|Q2YY51|DING_STAAB RecName: Full=Probable ATP-dependent helicase dinG homolog gi|82656585|emb|CAI81008.1| probable ATP-dependent DNA helicase [Staphylococcus aureus RF122] Length = 897 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 6/176 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRN-IQIIDTYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + +D + ++AHN FD+ FI + N I Sbjct: 64 MLQQAPYFNQVAQGIYDNMKD--CIFVAHNVDFDLNFIKKAFKDCNIQYRPKRVIDTLEI 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L+ L + +GIT + H A D+ + + I ++ Sbjct: 122 FKIAFPTDKSYQLSELAEAHGIT--LANAHRADEDAATTAKLMILAFEKFEKLPLD 175 >gi|163800687|ref|ZP_02194587.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4] gi|159175036|gb|EDP59833.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4] Length = 239 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+ + + II IG V + + + P K E++ +HGIT Sbjct: 49 FVALDFETTGLNPQKNGIITIGLVPFSLNRIFLRQARHWKVRPQ-EKLDEESVIIHGITH 107 Query: 68 EFLKDKPSFSSIFSEFWDFF 87 L D P I + Sbjct: 108 NELVDAPDLDEILGPLLESL 127 >gi|309801335|ref|ZP_07695464.1| exonuclease [Bifidobacterium dentium JCVIHMP022] gi|308222224|gb|EFO78507.1| exonuclease [Bifidobacterium dentium JCVIHMP022] Length = 187 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 8/175 (4%) Query: 12 FDIETTGLDS-KNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITDEF 69 D ETTGL + IIEIGA+ + ++ R F+ + P R +L GI+D Sbjct: 3 LDTETTGLHPEEGATIIEIGALLVTPGNENARPRFEQLVDPQ-RPLPEFISRLTGISDGM 61 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124 L++KP+ + F + ++ IAHNA+FD+GF++A + + D + Sbjct: 62 LRNKPTADAAMLRFHQWLDDVWPAGRPLTVIAHNAEFDIGFLDAAERAHDPDANEFDCRW 121 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + + I +H AL D+ +Y + S Sbjct: 122 LCTKEMSWELNPQKRHHRVSDLIVDYRIGDVEEHRALSDAIQEQMIYRALCREAS 176 >gi|260364890|ref|ZP_05777461.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] gi|260879709|ref|ZP_05892064.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|260898816|ref|ZP_05907257.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|308086617|gb|EFO36312.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|308093346|gb|EFO43041.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|308111638|gb|EFO49178.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] Length = 239 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+ + II IG V + P +K +++ +HGIT Sbjct: 49 FVALDFETTGLNPEKHDIITIGLVPFNLRRIFLRDARHWKVRPQ-KKLDEDSVIIHGITH 107 Query: 68 EFLKDKP 74 L D P Sbjct: 108 SELIDAP 114 >gi|289209028|ref|YP_003461094.1| exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp. K90mix] gi|288944659|gb|ADC72358.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp. K90mix] Length = 246 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 19/33 (57%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 R + D+ETTGLD ++D I+ IG V + Sbjct: 55 RFLAVDLETTGLDPEHDAILSIGWVAMDGVRID 87 >gi|46198514|ref|YP_004181.1| hypothetical protein TTC0206 [Thermus thermophilus HB27] gi|55980543|ref|YP_143840.1| DNA polymerase III subunit epsilon [Thermus thermophilus HB8] gi|46196136|gb|AAS80554.1| hypothetical conserved protein [Thermus thermophilus HB27] gi|55771956|dbj|BAD70397.1| probable DNA polymerase III epsilon subunit [Thermus thermophilus HB8] Length = 247 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 +V D+ETTGL D +IE+G + L + FQ + P+ + Sbjct: 74 VVLDLETTGLAPGLDEVIEVGLLRLEGGRRL--PFQSLVRPSRPPSPF 119 >gi|315127531|ref|YP_004069534.1| DNA polymerase, exonuclease activity [Pseudoalteromonas sp. SM9913] gi|315016045|gb|ADT69383.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas sp. SM9913] Length = 207 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 54/183 (29%), Gaps = 4/183 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K R +V D+E TGLD K I+ + V + + N Q + + + Sbjct: 17 MQSALKQRYLVIDLELTGLDPKQHEIVSVAWVLIDNECIKNSLSQHLVNKEVKSLEQSPV 76 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLD 119 TD + + S + + + HNA D GF+ L+ Sbjct: 77 FHGISTDSVAQGQ---SLQSIITSLSAHFSDCILVFHNAMLDWGFLKLALKNAGITQRPK 133 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + R SS L+ L + ++ Sbjct: 134 LIIDTLQIEKKRLLKHSSDIKLDDLTLNECRKRYDLPSYHCHHALTDAQATAELLLAQCH 193 Query: 180 QIN 182 QI+ Sbjct: 194 QIS 196 >gi|226311041|ref|YP_002770935.1| hypothetical protein BBR47_14540 [Brevibacillus brevis NBRC 100599] gi|226093989|dbj|BAH42431.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 113 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 8/95 (8%) Query: 7 MRKIVFDIETTGLDSKNDR-----IIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEAL 60 M I+FD+E T +NDR IIEIGAV+L + FQ F+ P S Sbjct: 1 MNYIIFDLEAT--CWENDRTKQNEIIEIGAVKLNENLAVIGEFQTFIKPKLNPILSDFCK 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI 95 KL I+ + + PSF S F ++ + Sbjct: 59 KLTSISQKEVDQAPSFGEAISHFQNWIGSEYHLCS 93 >gi|210135714|ref|YP_002302153.1| DNA polymerase III subunit epsilon [Helicobacter pylori P12] gi|210133682|gb|ACJ08673.1| DNA polymerase III epsilon subunit [Helicobacter pylori P12] Length = 323 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 111 FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 167 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 168 LNAPSVHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 213 >gi|71667552|ref|XP_820724.1| exonuclease [Trypanosoma cruzi strain CL Brener] gi|70886080|gb|EAN98873.1| exonuclease, putative [Trypanosoma cruzi] Length = 223 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 7/75 (9%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-------NRTFQVFLCPNGRKNSPEA 59 M I D+ETTG ++ D ++ IGAVEL T R+F + P+ + Sbjct: 1 MSAICVDLETTGFSAQRDDVVSIGAVELRWDGTTLQQWVLGARSFFRTVRPSKPSSHQAE 60 Query: 60 LKLHGITDEFLKDKP 74 + P Sbjct: 61 AVHGLSFEMLRDAPP 75 >gi|282877400|ref|ZP_06286223.1| DNA polymerase III subunit epsilon domain protein [Prevotella buccalis ATCC 35310] gi|281300452|gb|EFA92798.1| DNA polymerase III subunit epsilon domain protein [Prevotella buccalis ATCC 35310] Length = 194 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 5/167 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D ET +S + +G V + + T ++ + P P + +HGI Sbjct: 33 FAAIDFET--ANSCRSSVCSVGVVIVENGKIT-DSYYHLIRPYPNYYHPRNIAVHGILPS 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +D P+F ++++ ++ +AHN FD + A L+ ++ Sbjct: 90 DTQDAPTFPEVWAQIAPLI--KHLPLVAHNKAFDESCLKACFATYGMAYLNYPFYCTLIA 147 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + + + + H AL D+ S + + ++ Sbjct: 148 SRRVFCHHELANHQLHTVAAHLGYNLVNHHHALADAEACSVIALNIL 194 >gi|227541474|ref|ZP_03971523.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51866] gi|227182756|gb|EEI63728.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51866] Length = 427 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 6/174 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + + D ET + + +I V++ +R F L P + E LHGI+ Sbjct: 253 KFVAVDFET--ANRSSRSACQIAMVKVEYGQIVDR-FSTLLKPPPGHDEFEFTYLHGISA 309 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D PS+ + F AHNA FD G + L Sbjct: 310 RDVADAPSWKFVEPYIRAFV--DRLPVYAHNASFDRGVWVSMDSYYGTRTLPEEFYCSYR 367 Query: 128 SIARRKHPSSRNDLNSLCKRYG-ITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + R L ++ K + + ++ L + ++M+ S+ Sbjct: 368 TAKRLIPGLENYKLPTVTKAIAPWFRLDHHRADSDAEACALIVIGLQMLENYSE 421 >gi|325281116|ref|YP_004253658.1| Exonuclease RNase T and DNA polymerase III [Odoribacter splanchnicus DSM 20712] gi|324312925|gb|ADY33478.1| Exonuclease RNase T and DNA polymerase III [Odoribacter splanchnicus DSM 20712] Length = 163 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 7/168 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 D ET +++ + IG V + TF + P + ++HG+ Sbjct: 3 NFAAIDFET--ANNERSSVCSIGIVIVRGEEIV-DTFYSLIKPEPEYYNYWCSQVHGLCS 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 D P F ++ + +AHN FD + A + D D Sbjct: 60 NDTTDAPIFPEVWKQIEPLIKG--LPLVAHNKPFDESCLKAVFRVYQMDYPDYEFYDTLC 117 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L+++ G + H AL D+ + + +++ Sbjct: 118 ASRQAFPELENHQLHTVAATCG--YQLENHHHALADAEACAWIAREIL 163 >gi|121607002|ref|YP_984331.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2] gi|120595971|gb|ABM39410.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2] Length = 203 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 5/98 (5%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ DR E+ V L +R FQ + G + +L GIT+ Sbjct: 6 VIDFETTGISPGCGDRATEVAIVLLEGGRVVDR-FQSLMN-AGVRIPSFITQLTGITNAM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 + P + + ++ F + A +AHNA FD F Sbjct: 64 VAGAPDAAQVMTQASRFVGD--APLVAHNAAFDRKFWQ 99 >gi|119775228|ref|YP_927968.1| ribonuclease T [Shewanella amazonensis SB2B] gi|119767728|gb|ABM00299.1| RNAse T [Shewanella amazonensis SB2B] Length = 258 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 14/209 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI L + ++T + P G P AL +G Sbjct: 40 VVIDVETAGFNAQTDALLEIAVTLLTMDDNGMLALDKTLHFHIEPFEGANLEPAALAFNG 99 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A +AHNA FD GF+ + R Sbjct: 100 IDPSNPLRGAVSEKEAMLEIFKAVRKGMKAADCHRAVIVAHNAAFDHGFVTKAIDRSGVK 159 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L CK GI ++ H AL D+ ++++ ++ Sbjct: 160 RSPFHPFATFDTACLSGLALGHTVLAQACKIAGIPFDNKEAHSALYDTERTAELFCYIVN 219 Query: 177 GGSQI-NFGFKTNEDRFFKEEKKTVPNIS 204 + + E E I Sbjct: 220 RWKSLGGWPLLGAEALDDAENTAADKEID 248 >gi|70726458|ref|YP_253372.1| ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435] gi|123660231|sp|Q4L6F9|DING_STAHJ RecName: Full=Probable ATP-dependent helicase dinG homolog gi|68447182|dbj|BAE04766.1| probable ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435] Length = 900 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 4/109 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + T+ + P L I D Sbjct: 6 YAVVDLETTGNQLDYDEIIQIGITFVSNNKISG-TYHSMIR-TDLDIPPFIQALTSIEDT 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 L+ P F I E + + ++AHN FD+ FI Q N D Sbjct: 64 MLEQAPYFHEIAQEIYKQLKD--RVFVAHNVDFDLNFIKKAFQNCNIDF 110 >gi|296160037|ref|ZP_06842857.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] gi|295889783|gb|EFG69581.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] Length = 383 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 5/102 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + RI E+G VE+ + + + P + +L GIT+ Sbjct: 16 VFVDLETTGGSTAEHRITEVGVVEVGPAGVS--RWSSLVDPQ-QPIPSFIQQLTGITNAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 ++ P+F +I ++ N ++AHNA FD GF+ E + Sbjct: 73 VRGAPTFEAIAPALFERLNG--KLFVAHNASFDRGFLRGEFR 112 >gi|169347300|ref|ZP_02866238.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552] gi|169293917|gb|EDS76050.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552] Length = 261 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 7/165 (4%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + +V D ETTG++ ND ++++ V D N P + P A +++GI+ Sbjct: 4 KYVVLDFETTGVNRYHNDEVVQVAIVNQDDEVLINE----LCKPKHHFSWPSAQRINGIS 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +KDK F S + + + + +N F+ G + I+K Sbjct: 60 PLMVKDKLCFESYIDRIIE-IFDNSEFIVCYNIAFEQGMLKNYGIDISKYVFKDPMKDFA 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R + SL + + H AL D + Sbjct: 119 YIYGERGY-HGGYKWQSLSTCAKYFGYNFAAHDALEDVKATRYCF 162 >gi|91784877|ref|YP_560083.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400] gi|91688831|gb|ABE32031.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400] Length = 395 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 5/102 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + RI E+G VE+ + + + P + +L GIT+ Sbjct: 28 VFVDLETTGGSTAEHRITEVGVVEVGPAGVS--RWSSLVDPQ-QPIPSFIQQLTGITNAM 84 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 ++ P+F +I ++ N ++AHNA FD GF+ E + Sbjct: 85 VRGAPTFEAIAPALFERLNG--KLFVAHNASFDRGFLRGEFR 124 >gi|33596994|ref|NP_884637.1| putative exonuclease [Bordetella parapertussis 12822] gi|33566445|emb|CAE37698.1| putative exonuclease [Bordetella parapertussis] Length = 247 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 22/49 (44%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 +V D+ETTGL I+E AV + + R F + +GR Sbjct: 80 FVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVRTDGRVPPF 128 >gi|33600836|ref|NP_888396.1| putative exonuclease [Bordetella bronchiseptica RB50] gi|33568436|emb|CAE32348.1| putative exonuclease [Bordetella bronchiseptica RB50] Length = 247 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 22/49 (44%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 +V D+ETTGL I+E AV + + R F + +GR Sbjct: 80 FVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVRTDGRVPPF 128 >gi|28898677|ref|NP_798282.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD 2210633] gi|28806895|dbj|BAC60166.1| putative DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD 2210633] Length = 243 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+ + II IG V + P +K +++ +HGIT Sbjct: 53 FVALDFETTGLNPEKHDIITIGLVPFNLRRIFLRDARHWKVRPQ-KKLDEDSVIIHGITH 111 Query: 68 EFLKDKP 74 L D P Sbjct: 112 SELIDAP 118 >gi|323492356|ref|ZP_08097509.1| ribonuclease T [Vibrio brasiliensis LMG 20546] gi|323313403|gb|EGA66514.1| ribonuclease T [Vibrio brasiliensis LMG 20546] Length = 219 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L + T + P G EAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLKMDENGDLVPASTIHFHVEPFEGANLEKEALDFNG 79 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD F+ +R Sbjct: 80 IRDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIMVAHNANFDHSFVMEASERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ ++ H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKTAGMEFDNKEAHSALYDTQKTAELFCGIV 199 Query: 176 VGGSQIN 182 + Sbjct: 200 NKWKALG 206 >gi|300361735|ref|ZP_07057912.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus gasseri JV-V03] gi|300354354|gb|EFJ70225.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus gasseri JV-V03] Length = 937 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 3/92 (3%) Query: 9 KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++ D II+ G + +T+ + P+ R+ L I++ Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKKRKVV-KTYSFLINPH-REIPQAVENLTHISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 + F + N Sbjct: 68 RDVAQARDFKYYAPKIRKILENTIFVAHNVNF 99 >gi|104784044|ref|YP_610542.1| exonuclease [Pseudomonas entomophila L48] gi|95113031|emb|CAK17759.1| putative exonuclease [Pseudomonas entomophila L48] Length = 236 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCP 50 R +V D+ET+GL+ D+++ IGAV + D + R F+ P Sbjct: 40 RWVVLDLETSGLNLNRDQVLSIGAVAIEDGAIDLGRPFERTLHRP 84 >gi|91227218|ref|ZP_01261677.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] gi|91188746|gb|EAS75034.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] Length = 239 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+ + II IG V + + P R +++ +HGIT Sbjct: 49 FVALDFETTGLNPEKHDIITIGLVPFNLKRIFLRNSRHWKVRPQ-RALDEDSVIIHGITH 107 Query: 68 EFLKDKP 74 L D P Sbjct: 108 SELIDAP 114 >gi|85713236|ref|ZP_01044262.1| RNase T, degrades tRNA [Idiomarina baltica OS145] gi|85692931|gb|EAQ30903.1| RNase T, degrades tRNA [Idiomarina baltica OS145] Length = 222 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 70/187 (37%), Gaps = 15/187 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-----RTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++ D ++EI AV +L++ + + Q + P G A++ + Sbjct: 31 VVIDVETAGFNASTDALLEIAAV-ILNFDEHGQLKPVESHQFHVEPFEGANIEQAAIEFN 89 Query: 64 GITDE--------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 GI + + + Q + + HN+ FD F+ +R N Sbjct: 90 GIDPHSELRGALPEDEVLKALFKPIRKAQKAAGCQRSVLVGHNSNFDHSFLMRAAERANI 149 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + + L CK GI + H AL D+ ++++ M+ Sbjct: 150 KRNPFHPFVSFDTTSLAALTLGQTVLIKACKAAGIEFDQKQAHSALYDTEKTAELFCWMV 209 Query: 176 VGGSQIN 182 + Sbjct: 210 NKWKALG 216 >gi|328474758|gb|EGF45563.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329] Length = 239 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+ + II IG V + P +K +++ +HGIT Sbjct: 49 FVALDFETTGLNPEKHDIITIGLVPFNLRRIFLRDARHWKVRPQ-KKLDEDSVIIHGITH 107 Query: 68 EFLKDKP 74 L D P Sbjct: 108 SELIDAP 114 >gi|328468890|gb|EGF39850.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329] Length = 248 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 71/192 (36%), Gaps = 17/192 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL++++D I+ IG V +D + + + + PN R+ + E++ +HGITD Sbjct: 58 FVSVDFETTGLNAEDDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITD 116 Query: 68 EFLKDKPSFSSIFSE------------FWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 +K+ P + I E + Q N + + Sbjct: 117 SEVKNAPQLTQILGEILDALAGKVVLVHYKNIERQFFYNALLNTIGEGIQFPVVDTLDIE 176 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L + + K P S ++ + + H AL D+ ++++ + Sbjct: 177 YALQRRECSGIWNKLKGKKPGSVRLGHARERYG---LPAYQPHHALTDALATAELFQAQL 233 Query: 176 VGGSQINFGFKT 187 + + Sbjct: 234 QYHFNRDMPISS 245 >gi|288802870|ref|ZP_06408307.1| exonuclease [Prevotella melaninogenica D18] gi|288334687|gb|EFC73125.1| exonuclease [Prevotella melaninogenica D18] Length = 163 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 7/167 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D ET + + + +G V + +F + P ++HG+T Sbjct: 4 FAAIDFET--ANFERCSVCSVGLVIVRGGEIV-DSFYSLIQPEPNYYHWRCTQVHGLTCA 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P F I+ + +AHNA FD + A D D + + Sbjct: 61 DTDGAPVFCEIWKQIEPMIEG--LPLVAHNASFDKSCLKASFYTYQMDYPDYEFLDTLKA 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + L+++ G H AL D+ + + +++ Sbjct: 119 ARRHFPHLPDHQLHTVSSACGYE--LTDHHHALADAEACAWIAREIL 163 >gi|315650299|ref|ZP_07903371.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315487410|gb|EFU77720.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 236 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 58/179 (32%), Gaps = 6/179 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELL--DYSKTNRTFQVFLCPNGRKNSPE 58 I + + I FD ETTG + D+IIE+ A+ + + F Sbjct: 5 IFEKYNQIIFFDTETTGFHPERLDQIIELAAISIDKTGRQQEMDEFIKLFRVQELPQQIT 64 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI---NAELQRINK 115 L + K F+ + IAHNA+FD+ F+ + Sbjct: 65 ELTGISSDTLSAQGKDEFAVLNKFIDMIQGNGKTLLIAHNAQFDLKFMAYAIHRNKNKEW 124 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + + L S +Y + ++ H A+ D L +V M Sbjct: 125 MQVFNDCDYLDTLTVYKDRRQYPHRLESAIVQYHLINKVKNSHRAIDDCRALIEVTRCM 183 >gi|255689883|ref|ZP_05413558.1| exonuclease [Bacteroides finegoldii DSM 17565] gi|260624488|gb|EEX47359.1| exonuclease [Bacteroides finegoldii DSM 17565] Length = 183 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 66/182 (36%), Gaps = 9/182 (4%) Query: 8 RKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 I D ET TG K I E G + D T + P G S +++HGI Sbjct: 5 NFIAIDFETATG---KRASICEAGICVVRDGKIV-ETRSWLVRPQGNSYSYWNMQIHGIR 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D P F +++E + + +AHNA FD+G I L+ + L+ + Sbjct: 61 PNDTADSPEFPEVWTEISKYLKD-IPVLVAHNAAFDIGCIRHSLELYGMEKLEITYYCSL 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + + + I + H A D+ + + +++K + + Sbjct: 120 RAARKLYSFGCNSLD---YLCDQFRIPYGQHHRAGDDAEMCARLFLKELEDAGWCGWEEM 176 Query: 187 TN 188 N Sbjct: 177 GN 178 >gi|308125815|ref|ZP_05777630.2| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] gi|308111533|gb|EFO49073.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] Length = 247 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 69/180 (38%), Gaps = 17/180 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL++++D I+ IG V +D + + + + PN R+ + E++ +HGITD Sbjct: 57 FVSVDFETTGLNAEDDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITD 115 Query: 68 EFLKDKPSFSSIFSE------------FWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 +K+ P + I E + Q N + + Sbjct: 116 SEVKNAPQLTQILGEILDALAGKVVLVHYKNIERQFFYNALLNTIGEGIQFPVVDTLDIE 175 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L + + K P S ++ + + H AL D+ ++++ + Sbjct: 176 YALQRRECSGIWNKLKGKKPGSVRLGHARERYG---LPAYQPHHALTDALATAELFQAQL 232 >gi|269967099|ref|ZP_06181167.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B] gi|269828358|gb|EEZ82624.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B] Length = 239 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+ + II IG V + + P R +++ +HGIT Sbjct: 49 FVALDFETTGLNPEKHDIITIGLVPFNLKRIFLRNSRHWKVRPQ-RALDEDSVIIHGITH 107 Query: 68 EFLKDKP 74 L D P Sbjct: 108 SELIDAP 114 >gi|255615473|ref|XP_002539676.1| DNA polymerase III epsilon subunit, putative [Ricinus communis] gi|223503630|gb|EEF22707.1| DNA polymerase III epsilon subunit, putative [Ricinus communis] Length = 205 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 52/212 (24%), Positives = 78/212 (36%), Gaps = 19/212 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR------TFQVFLCPNGRKNSPEALK 61 R ++ D ETTG D D++IE+G V +T TF P G PE+ K Sbjct: 3 RAVILDTETTGTDYVQDKVIELGMVAFDYCPQTGMIGDVHGTFNQLEDP-GFPIPPESTK 61 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +H ITDE + K SI E + F + + IAHN++FD F+ P Sbjct: 62 VHHITDEMVAGK----SINDEEVEAFIKPASIIIAHNSRFDRRFVEPRWPIFQSKPW--- 114 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + A+ + + L + H H A D H L +V Sbjct: 115 ----ACTFAQIDWDAEGLGSSKLEFLAYRSGFHYEGHRASTDCHALLEVLHCATTESGVS 170 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 + ++ KE K + N +D Sbjct: 171 PMK-QMLDNARQKEYKVSALNAPFDSKDLLKL 201 >gi|260901010|ref|ZP_05909405.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|308110780|gb|EFO48320.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] Length = 248 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 68/180 (37%), Gaps = 17/180 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+++ D I+ IG V +D + + + + PN R+ + E++ +HGITD Sbjct: 58 FVSVDFETTGLNAEEDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITD 116 Query: 68 EFLKDKPSFSSIFSE------------FWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 +K+ P + I E + Q N + + Sbjct: 117 SEVKNAPQLTQILGEILDALAGKVVLVHYKNIERQFFYNALLNTIGEGIQFPVVDTLDIE 176 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L + + K P S ++ + + H AL D+ ++++ + Sbjct: 177 YALQRRECSGIWNKLKGKKPGSVRLGHARERYG---LPAYQPHHALTDALATAELFQAQL 233 >gi|312963467|ref|ZP_07777949.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6] gi|311282273|gb|EFQ60872.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6] Length = 235 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 63/199 (31%), Gaps = 4/199 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+ET+GL+ D+++ IGAV + D + F ++ + I Sbjct: 40 RWVVVDLETSGLNLNRDQVLSIGAVVIEDGAVD---FSQLFERTLQRTDTKLSPSVLIHG 96 Query: 68 EFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + S DF ++ +A +A FD + L+ L + Sbjct: 97 LGPSAIAAGSDPVEALLDFMEFVGDSPLLAFHAPFDQHMLGRALKDSLGYRLAHPFLDVA 156 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + + + +H A D+ +++ + + Q + Sbjct: 157 DIAPLLCPEAHIREAGLDDWINHFKLQVGERHHASADALATAELMLILFSRARQQHIDTP 216 Query: 187 TNEDRFFKEEKKTVPNISL 205 + K+ S Sbjct: 217 HALQTRLSQWKRRKQAPSF 235 >gi|163751265|ref|ZP_02158493.1| ribonuclease T [Shewanella benthica KT99] gi|161328979|gb|EDQ00053.1| ribonuclease T [Shewanella benthica KT99] Length = 225 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIG--AVELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++EI +++ D ++T + P G P+AL +G Sbjct: 20 VVIDVETAGFNCQTDALLEIAVTMLKMDDEGILSLDKTLHYHIEPFEGANLEPDALAFNG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + +AHNA FD GF++ ++R Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKEVKKAQKAVGCHRSIIVAHNAAFDHGFVSKAIERCALK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A L C GI + H AL D+ ++++ ++ Sbjct: 140 RTPFHPFATFDTAALSGLALGHTVLAKACSIAGIDFDNSEAHSALYDTERTAELFCHIVN 199 Query: 177 GGSQIN 182 + Sbjct: 200 KWKTLG 205 >gi|71734762|ref|YP_276473.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555315|gb|AAZ34526.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A] Length = 204 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 3/168 (1%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + FQ + G + L GI+ Sbjct: 4 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIV-ELFQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF + + + ++ Sbjct: 62 NNMIRTAPSAERVMGDVADFVGATPLVAHNASFDQKFWDYELSRIQRKLEQSFACSMLLA 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L S + +HR+ A + ++L + + ++ Sbjct: 122 RRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNEL 169 >gi|324995504|gb|EGC27416.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK678] Length = 814 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V + + T +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ + A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLSQAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAESLFWEGFDLLTPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ + L +LC IS + H AL D+ + +++K+ + Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172 Query: 182 NFGF 185 Sbjct: 173 PKAL 176 >gi|323344490|ref|ZP_08084715.1| DNA polymerase III, epsilon subunit [Prevotella oralis ATCC 33269] gi|323094617|gb|EFZ37193.1| DNA polymerase III, epsilon subunit [Prevotella oralis ATCC 33269] Length = 899 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 3/108 (2%) Query: 8 RKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGI 65 R+IV FD ETTGL D I++I AV + F+VF+ R+ + + Sbjct: 516 REIVIFDTETTGLSVFEDDILQIAAVTICRGEVVRGSEFKVFIATE-REIPRKLGDIDNP 574 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 E +K + + + HNA +D ++ L+R Sbjct: 575 IIEEMKHNRLLGHAEALQLFMNYVGDRTLLGHNADYDYHILDYNLRRY 622 >gi|322372929|ref|ZP_08047465.1| putative CRISPR-associated protein Cas2 [Streptococcus sp. C150] gi|321277971|gb|EFX55040.1| putative CRISPR-associated protein Cas2 [Streptococcus sp. C150] Length = 301 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53 +V DIET GLD K + IIEIGAV+ F + + Sbjct: 131 YVVIDIETDGLDEKKNTIIEIGAVKFNGQQV--EEFNSLIKYEEK 173 >gi|224372263|ref|YP_002606635.1| exonuclease [Nautilia profundicola AmH] gi|223589603|gb|ACM93339.1| exonuclease [Nautilia profundicola AmH] Length = 293 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ ++ D ETTG + + DRII++ + L + + + P + H Sbjct: 1 MKIVILDTETTG-NKEEDRIIQLSYLVLNENLEIEEIHDELVKPPLPISFEAMAVHHITN 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + N + HNAKFD+ + E +D R++ Sbjct: 60 EMVEDKPLIKHTESYKRLKELNSPENLLVIHNAKFDLDMLKKEGFNSFFKLIDTFRVLKH 119 Query: 127 LSIARRKHPSSRND-------LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 L + +C++Y I I+ G ++ LL + + Sbjct: 120 LIPEGKFSLQYNRYALGLYKKEKDICEKYNIQINAHDALGDVIVLGLLFEYLV 172 >gi|207092434|ref|ZP_03240221.1| DNA polymerase III subunit epsilon [Helicobacter pylori HPKX_438_AG0C1] Length = 160 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 D+ETTG I+EIGAV++ NR F+ + Sbjct: 75 FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK 112 >gi|167035772|ref|YP_001671003.1| DNA polymerase IIIsubunit epsilon [Pseudomonas putida GB-1] gi|166862260|gb|ABZ00668.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1] Length = 201 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 7/174 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R E+ V L R +Q + G L GIT Sbjct: 3 RIAVIDFETTGVSPGAGCRATEVAVVMLEGGRIVER-YQSLMN-AGVPVPAFVAGLTGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ P + +E +F +AHNA FD F + EL RI + + Sbjct: 61 TAMLRTAPPVDKVMNEVAEFVGG--TPLLAHNAAFDQKFWDYELSRIGRS--RSQPFACS 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L ++RR P++ N R+ + H A+ D+ + +++ + Q Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMADAEMAANLLQHLTGVLRQ 170 >gi|88812259|ref|ZP_01127510.1| putative DNA polymerase III epsilon chain [Nitrococcus mobilis Nb-231] gi|88790510|gb|EAR21626.1| putative DNA polymerase III epsilon chain [Nitrococcus mobilis Nb-231] Length = 186 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 18 GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77 G D R++EIG VE+ D T R+F + P GR AL+ G++ E L DKP F Sbjct: 13 GDDPTTSRVVEIGCVEMHDDHPTGRSFHSYANP-GRDLDVAALQAKGLSTEALADKPRFG 71 Query: 78 SIFSEFWDFFNE 89 I + Sbjct: 72 DIAYGLICVIRD 83 >gi|167464941|ref|ZP_02330030.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae subsp. larvae BRL-230010] Length = 89 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Query: 7 MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 MR+I VFD+ETTGLD D+I EI A+ + R Sbjct: 1 MREIYTVFDLETTGLDPTKDQITEITAIRTDLIREYGR 38 >gi|15645997|ref|NP_208178.1| DNA polymerase III subunit epsilon [Helicobacter pylori 26695] gi|2314554|gb|AAD08426.1| DNA polymerase III epsilon subunit (dnaQ) [Helicobacter pylori 26695] Length = 350 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 5/108 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 111 FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + PS E N+ ++AHNA FD F+ PL Sbjct: 168 LNAPSAHEALQEL--RLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPL 213 >gi|330836252|ref|YP_004410893.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM 17374] gi|329748155|gb|AEC01511.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM 17374] Length = 231 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 80/217 (36%), Gaps = 11/217 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + ++ +G + K T+ + P P +++HGIT Sbjct: 24 MEFVALDFET--ANGTHESACSLGLALMDGTGKLIDTWYQLIKPPSSFFDPANIEIHGIT 81 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + D PSF ++S +F + IAHNA FD+ + A L + Sbjct: 82 PENVADAPSFDKVWSAAREFIAD--RLVIAHNATFDMTILKAMLHWYKMEIPRIGYACTL 139 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + + L +L + +G H AL D+ + ++ K + + Sbjct: 140 RLSRKVWPEMNNYKLTTLSEVFGFDYRA---HYALDDAVNCAKLFYKECGS----SLSSR 192 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 +RF + + ++ + + + ELD Sbjct: 193 DALERFLERNGLPILDLDTGEPFAKVVVDDSDGELDL 229 >gi|146279555|ref|YP_001169713.1| transposase [Rhodobacter sphaeroides ATCC 17025] gi|145557796|gb|ABP72408.1| Transposase and inactivated derivatives-like protein [Rhodobacter sphaeroides ATCC 17025] Length = 282 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 5/179 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ +V D+ET + + I +IG V + + P P + +HGIT Sbjct: 1 MKFVVLDVET--ANPRMSSICQIGLVTFEGGVEVAAESH-LIDPEDH-FDPVNVAIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +P+F ++ D + EL + Sbjct: 57 AAAVVGEPTFREVYGRVCD-LTAGTVVACHTHFDRVALSRVCELHALPTLSCSWLDTARV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 A + S L++L + +GIT H + L+ I+ Sbjct: 116 ARRAWVEFSKSGYGLSNLARHFGITFQHHDALHDARAAGLILARAIEETGHDPSEWIRL 174 >gi|212702995|ref|ZP_03311123.1| hypothetical protein DESPIG_01033 [Desulfovibrio piger ATCC 29098] gi|212673583|gb|EEB34066.1| hypothetical protein DESPIG_01033 [Desulfovibrio piger ATCC 29098] Length = 173 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 10/167 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + D ET+G +G + D + T +F + P + +HG+T Sbjct: 5 RYVALDFETSG--YAAHSACAVGLCRIEDGAVT-DSFYSLIRPPSSRV--LFTHVHGLTW 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 LKD P+F+ ++ + F E + +AHNA FD ++A Q + + TL Sbjct: 60 PLLKDAPTFTEVWPQLAAF-MEGSRAILAHNAGFDRRVLHASCQALGLVQP-QLPFLCTL 117 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ARR P + L+S+C +G H A D+ +++Y+++ Sbjct: 118 KGARRSLPLASRALDSVCDYFG---IPLDHHHAGSDARACAEIYLRL 161 >gi|303229201|ref|ZP_07316002.1| DNA polymerase III, epsilon subunit domain protein [Veillonella atypica ACS-134-V-Col7a] gi|303230531|ref|ZP_07317286.1| DNA polymerase III, epsilon subunit domain protein [Veillonella atypica ACS-049-V-Sch6] gi|302514814|gb|EFL56801.1| DNA polymerase III, epsilon subunit domain protein [Veillonella atypica ACS-049-V-Sch6] gi|302516214|gb|EFL58155.1| DNA polymerase III, epsilon subunit domain protein [Veillonella atypica ACS-134-V-Col7a] Length = 209 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 7/175 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + + + + + + T + + + P PE +++HGI + Sbjct: 4 FVALDFET--ANKYKNSACSLAVITVENGQITKKAY-SLIKPPFMSFDPECIEIHGIEPK 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +F ++ ++ + + IAHNAKFD+ + A L N + Sbjct: 61 EVLHEKTFDQLWPAIYEN-HLKGKIMIAHNAKFDMNVLRATLDYYNIPWPELDYACTVKI 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + LN++ G+ H AL D+ + V I+ + Sbjct: 120 SRAVWPDLVNHKLNTMAAYLGVEF---KHHYALDDAETCAKVAIEAARLKGANSL 171 >gi|145589827|ref|YP_001156424.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048233|gb|ABP34860.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 466 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 DIETTG DRI EIG L + + ++ + P +L GI+ + + Sbjct: 13 FVDIETTGSHFDRDRITEIGIKTLANDGI--QVWERLINPQT-FIPQNIQRLTGISPQMV 69 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 + +PSF + E ++AHNA+FD GFI A + Sbjct: 70 EGQPSFDQVAKELKQELEG--KIFVAHNARFDYGFIKASFK 108 >gi|329667338|gb|AEB93286.1| ATP dependent helicase [Lactobacillus johnsonii DPC 6026] Length = 938 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 3/92 (3%) Query: 9 KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++ D II+ G + +T+ + P+ R+ L I++ Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKKRKVV-KTYSFLINPH-REIPQAVENLTHISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 E + FS + N Sbjct: 68 EDVAQAHDFSYYAPKIRKILENTIFVAHNVNF 99 >gi|311745409|ref|ZP_07719194.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1] gi|126577956|gb|EAZ82176.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1] Length = 223 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK---TNRTFQ 45 +V D ETTGL+ D I+ GAV++ D T + Sbjct: 39 FVVLDTETTGLNPSVDHILSFGAVKIEDQMIQISTGVEWY 78 >gi|42519127|ref|NP_965057.1| hypothetical protein LJ1202 [Lactobacillus johnsonii NCC 533] gi|41583414|gb|AAS09023.1| hypothetical protein LJ_1202 [Lactobacillus johnsonii NCC 533] Length = 938 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 3/92 (3%) Query: 9 KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++ D II+ G + +T+ + P+ R+ L I++ Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKKRKVV-KTYSFLINPH-REIPQAVENLTHISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 E + FS + N Sbjct: 68 EDVAQAHDFSYYAPKIRKILENTIFVAHNVNF 99 >gi|89898728|ref|YP_515838.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56] gi|89332100|dbj|BAE81693.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56] Length = 249 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 4/179 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D E TGLD K DRIIE A + + + + P+ R S E+ ++H I+D Sbjct: 9 FVCLDCEMTGLDVKKDRIIEFAAKRFTFDNVI-DSMETLINPD-RVISAESQRIHRISDA 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD+P S +F + F E + + H+ FD+ + E +RI + L IIDTL Sbjct: 67 MLKDQPRISEVFPKIQAFLKEGDYI-VGHSVGFDLQVLTQEAERIGETFLSKYCIIDTLR 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL-LSDVYIKMMVGGSQINFGFK 186 +A+ S N L +L + + + ++ ++ + + K Q+ Sbjct: 126 LAKEYGDSPNNSLEALAVHFNVPYDGNHRAMKDVEININIFKHFCKRFRTIEQLKQVLS 184 >gi|310641105|ref|YP_003945863.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2] gi|309246055|gb|ADO55622.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2] Length = 177 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 8/129 (6%) Query: 7 MRKIVFDIETTGLDSKNDR-----IIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEAL 60 M I+FD+E T +NDR IIEIGAV++ + FQ F+ P S Sbjct: 1 MNYIIFDLEAT--CWENDRTRQNEIIEIGAVKVNVNLEIIGEFQTFIKPKLNPQLSDFCK 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L I+ + + F +F ++ ++ + + Sbjct: 59 SLTSISQQDIDMATYFPQAIYKFQEWIGKEPYYLCSWGFYDKSQLKKDCELHKIRTEWIR 118 Query: 121 SRIIDTLSI 129 + I Sbjct: 119 NHISIKHQH 127 >gi|332882730|ref|ZP_08450341.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679232|gb|EGJ52218.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 442 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 4/116 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + T++ F + P R KL GI ++ Sbjct: 2 YAILDIETTGGKYDEEGITEIAIYRFDGHELTDQ-FISLINPE-RPIQDFVTKLTGINNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 L++ P F + + Q+ + HNA FD + E +R+ D + + Sbjct: 60 MLRNAPKFYEVAKRIVE--ITQDTIIVGHNAAFDYRILQTEFRRLGYDYIRTTLCT 113 >gi|332359593|gb|EGJ37411.1| DNA polymerase III [Streptococcus sanguinis SK49] Length = 814 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V + + T +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ + A ++AHN KFD + L D L P Sbjct: 58 LTGLNDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ + L +LC IS + H AL D+ + +++K+ + Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172 Query: 182 NFGF 185 Sbjct: 173 PKAL 176 >gi|325694226|gb|EGD36142.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK150] Length = 814 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V + + T +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ + A ++AHN KFD + L D L P Sbjct: 58 LTGLNDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ + L +LC IS + H AL D+ + +++K+ + Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172 Query: 182 NFGF 185 Sbjct: 173 PKAL 176 >gi|302873810|ref|YP_003842443.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] gi|307689948|ref|ZP_07632394.1| DNA polymerase III subunit epsilon [Clostridium cellulovorans 743B] gi|302576667|gb|ADL50679.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] Length = 306 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 8/208 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + K + IG V + + R + P + P + +HGI Sbjct: 1 MNFIAIDFET--ANEKRNSPCSIGIVVVKNGEVVERI-HHLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++++P F ++++ FNE + IAHNA FD+ + + + + I Sbjct: 58 PAMVENEPEFHEVWAKIKHHFNE--SLVIAHNASFDISVLRKSAELYDIELPSFKYICTM 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LN++ G H AL D+ S++ + + + Sbjct: 116 RLAKNFYRGIENAKLNTVNDFLG---YEFKHHDALYDALACSNILLNISEELRCKDIDEI 172 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFT 214 + +P+ Sbjct: 173 SKLIGVTIGAVDNDDYKPSKAEGRPIKI 200 >gi|254228134|ref|ZP_04921563.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp. Ex25] gi|262393911|ref|YP_003285765.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] gi|151939207|gb|EDN58036.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp. Ex25] gi|262337505|gb|ACY51300.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] Length = 239 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+ + II IG V + + P R +++ +HGIT Sbjct: 49 FVALDFETTGLNPEKHDIITIGLVPFNLKRIFLRNSRHWKVRPQ-RALDEDSVIIHGITH 107 Query: 68 EFLKDKP 74 L D P Sbjct: 108 SELIDAP 114 >gi|294673890|ref|YP_003574506.1| exonuclease [Prevotella ruminicola 23] gi|294473761|gb|ADE83150.1| exonuclease [Prevotella ruminicola 23] Length = 163 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 67/170 (39%), Gaps = 8/170 (4%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+ D ET +++ + +G V + D +F + P + ++HG+ Sbjct: 1 MKDFAAIDFET--ANNERTSVCSVGVVIVRDGEIV-DSFYSLIQPEPNYYNYWCSQVHGL 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + ++ P F ++ + +AHN FD + A + D D Sbjct: 58 TRQDTEEAPIFPEVWKQIEPMIEG--LPLVAHNKAFDESCLKAVFRCYQMDYPDYQFYCT 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ + ++ + L+++ K G + H AL D+ + + +++ Sbjct: 116 CVASRKAFPNAANHQLHTISKLCGYE--LENHHHALADAEACAWIAREIL 163 >gi|213692117|ref|YP_002322703.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523578|gb|ACJ52325.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458233|dbj|BAJ68854.1| hypothetical protein BLIJ_1267 [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 185 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 1/64 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D ETTGLD + D I+EIG + D + F + G+ + Sbjct: 16 VDTETTGLDPRKDPILEIGMIATGPDLKPVDDGFHTTVHWEGKPSEFIQSMHGPNGLLAE 75 Query: 71 KDKP 74 P Sbjct: 76 CAHP 79 >gi|28898498|ref|NP_798103.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD 2210633] gi|260879545|ref|ZP_05891900.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|260894980|ref|ZP_05903476.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|28806716|dbj|BAC59987.1| putative DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD 2210633] gi|308086038|gb|EFO35733.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|308093371|gb|EFO43066.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] Length = 248 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 69/180 (38%), Gaps = 17/180 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL++++D I+ IG V +D + + + + PN R+ + E++ +HGITD Sbjct: 58 FVSVDFETTGLNAEDDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITD 116 Query: 68 EFLKDKPSFSSIFSE------------FWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 +K+ P + I E + Q N + + Sbjct: 117 SEVKNAPQLTQILGEILDALAGKVVLVHYKNIERQFFYNALLNTIGEGIQFPVVDTLDIE 176 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L + + K P S ++ + + H AL D+ ++++ + Sbjct: 177 YALQRRECSGIWNKLKGKKPGSVRLGHARERYG---LPAYQPHHALTDALATAELFQAQL 233 >gi|330505332|ref|YP_004382201.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] gi|328919618|gb|AEB60449.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina NK-01] Length = 233 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 67/193 (34%), Gaps = 6/193 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ETTGL+ + D+++ IGAV + + F+ P+ + ++ + Sbjct: 40 RLVVLDLETTGLNMRRDQVLAIGAVVIDHGAIDFAEQFECTLHQPDHQASASTLIHGIAP 99 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ P+ + ++ +A +A FD + L++ L S Sbjct: 100 SEVARGVDPAEGLLDFME----FVGSSPLLAFHAGFDQRMLARALRQSLGYRLQHSFFDV 155 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + + +H A D+ + +++ + + + Sbjct: 156 AEIAPLLCPQARIRQGGLDDWVAEFGLQVHQRHNASADALVTAELALMLFSKARRQGIDS 215 Query: 186 KTNEDRFFKEEKK 198 +R ++ Sbjct: 216 LCELERQLASRRR 228 >gi|188588313|ref|YP_001920971.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str. Alaska E43] gi|188498594|gb|ACD51730.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str. Alaska E43] Length = 309 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 64/178 (35%), Gaps = 8/178 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + P + P + +HGI Sbjct: 1 MNFVAIDFET--ANEKRNSPCSIGIVVVKDGKIIEEV-HHLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D+ F ++ + +FNE IAHNA FD+ + L+ N + I Sbjct: 58 PRMVQDELEFDKVWEKIKHYFNE--NLVIAHNASFDISVLRNTLELYNIEMPSFQYICTM 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 LN++ G H AL D+ ++ + + + + Sbjct: 116 KLSKNFYSNLDNARLNTVNNFLG---YEFKHHDALADAMACGNILLNICEELNTRDIN 170 >gi|328473671|gb|EGF44506.1| hypothetical protein VP10329_13450 [Vibrio parahaemolyticus 10329] Length = 254 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 59/189 (31%), Gaps = 21/189 (11%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + + I+ D ETTGL S+ I+E A+ + P EA Sbjct: 48 MKKLSTQNAIILDTETTGLGSQ-AEIVEFTAICAHTGKVIVNE---LVKPTC-SIPAEAT 102 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI----------------AHNAKFDVG 104 +HGITDE +KD P F +FS + I NA + Sbjct: 103 AIHGITDEDVKDAPDFHLVFSNHFLPLLNGRPIIIYNSDFDTRLIIQSLDKHCNAAYVQS 162 Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 + + L++ C + + +S + H AL D Sbjct: 163 VHDLFFKFCVPQCAMLWYAEFFGVWNEHHEDYKWQSLSNACAQQNVDVSDLTAHRALADC 222 Query: 165 HLLSDVYIK 173 + + Sbjct: 223 EMTRRLIHA 231 >gi|323497526|ref|ZP_08102544.1| putative exonuclease [Vibrio sinaloensis DSM 21326] gi|323317609|gb|EGA70602.1| putative exonuclease [Vibrio sinaloensis DSM 21326] Length = 238 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 4/168 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTGLD+++D I+ +G VE+ + T +L + A+ + IT Sbjct: 51 YLVLDLETTGLDAESDLILSMGWVEISNGVIDLSTAQHFYLSNESQIKPETAVI-NHITP 109 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L+D S + ++ + + + + + + Sbjct: 110 QMLEDGISIHDAMNALFEVAQGKVLVAHSCSVENSFIQRYLSYRFQINAVPLMWLDTLCI 169 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYIK 173 + ++ DL+ H AL+D+ +++ + Sbjct: 170 EKKLARAINNHQDLDVSLGATRERYQLPEYIEHNALMDAVATAELLLA 217 >gi|284040773|ref|YP_003390703.1| exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM 74] gi|283820066|gb|ADB41904.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM 74] Length = 270 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 6/229 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD+ETTG++ DRII+I ++ L + T + P G E+ +HGI D+ + Sbjct: 13 FFDLETTGINIAKDRIIDICIIKALPGGEVI-TKNQRVHP-GMPIPLESSLIHGIYDDDV 70 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D P F ++ F + + N + L+ + R++D I Sbjct: 71 QDAPPFKTVARTLAQFLDGCDLAGFNCNRFDVPLLVEEFLRANVDFDMKNRRLVDAQRIF 130 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 P + + + +H ++ + +L + M ++ + G + Sbjct: 131 HLMEPRNLSAAYKFYCNKDLVGAHGAEADTIATLEVLDAQVQRYMGMVAKSDSGADVVFE 190 Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEELD--EHD--KTIQTLGKNA 235 N ++ + + +E + +H ++ L K Sbjct: 191 NDVDMLHSLTANKNIDLAGRMVINEKGEEVFNFGKHKGAPVLEVLKKEP 239 >gi|163753129|ref|ZP_02160253.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1] gi|161326861|gb|EDP98186.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1] Length = 1460 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 71/230 (30%), Gaps = 19/230 (8%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + D R I+I + + P+G + Sbjct: 2 YLIFDTETTGLPKRWDAPISDTDNWPRCIQIAWQLHDELGNLIEHQDYLVQPDGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP- 117 A K+HGI+ E ++ E ++ + + N FDV + AE R N Sbjct: 62 AEKIHGISTELAAEQGISLQEVLEKFNIALSKTKFIVGQNVGFDVNIMGAEFYRENVANK 121 Query: 118 --------LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 I + + + +Y + H A D + Sbjct: 122 LQELPVLDTCTEDTAQLCQIPGGRGGKFKLPTLTELHQYLFGVGFGEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 +++++ D F + + I ++ +++ Sbjct: 182 CFLELIRRKEYTIEQLDVAPDYFERFSENNPQPIEMIGLKHINLKAASEK 231 >gi|149190815|ref|ZP_01869080.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1] gi|148835377|gb|EDL52349.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1] Length = 239 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 1/64 (1%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLH 63 N++ + D ETTGL+ D I+ IG V + + + P + + Sbjct: 45 NELEFVALDFETTGLNPDKDGILSIGLVPFNASRIRLKQAAHWTIRPKAKLEEESVVIHG 104 Query: 64 GITD 67 + Sbjct: 105 ITHN 108 >gi|319896653|ref|YP_004134846.1| ribonuclease t [Haemophilus influenzae F3031] gi|317432155|emb|CBY80506.1| ribonuclease T [Haemophilus influenzae F3031] Length = 229 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G D+K D ++E+ A+ L Y ++ + P G +PE+LK +G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + Q + +AHNA FD F+ A +R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L C I + H AL D+ ++++ M+ Sbjct: 143 RNPFHPFGMFDTASLSGLMFGQTVLVKACLAAKIPFDGKQAHSALYDTERTAELFCYMVN 202 Query: 177 GGSQIN 182 + Sbjct: 203 HLKDLG 208 >gi|313889930|ref|ZP_07823570.1| putative ATP-dependent DNA helicase DinG [Streptococcus pseudoporcinus SPIN 20026] gi|313121696|gb|EFR44795.1| putative ATP-dependent DNA helicase DinG [Streptococcus pseudoporcinus SPIN 20026] Length = 820 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 10/181 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 + + + V D+E T ++ +D RII+IG V + + +R FQ + P+ + S Sbjct: 1 MTEQLTKYAVIDLEAT--NAGSDARIIQIGIVIVENKKIIDR-FQTDINPHSK-LSEHIK 56 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS + S+ ++ + ++AHN KFD + L + L P Sbjct: 57 SLTGITDQQLASAPEFSQVASQIFELIKD--CVFVAHNVKFDANLLAEALFFEGFELLTP 114 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L+ + N + + H A+ D+ + ++IK+ Sbjct: 115 RMDTVELAQVFFPNLEKYNL---GHLAKNMDLHLAHAHTAIDDALATAKLFIKIQKKIES 171 Query: 181 I 181 + Sbjct: 172 L 172 >gi|239944923|ref|ZP_04696860.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998] gi|239991387|ref|ZP_04712051.1| DNA polymerase III [Streptomyces roseosporus NRRL 11379] gi|291448385|ref|ZP_06587775.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291351332|gb|EFE78236.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 641 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 9/175 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ET+GL ++ DR++ + + + D +T F L P P +++HG+T E L Sbjct: 23 VDVETSGLVARRDRVLSVAVITIGPDGEQTGE-FSTLLDPG---CDPGPVEVHGLTAERL 78 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P+F + + +AHNA+FD F+ E R R+ Sbjct: 79 RGAPTFDQVAGRIGAMLQD--RVLVAHNAQFDYDFLAHEFARARMWLPVSQRLCTLALNR 136 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + P+ L +L Y + H AL D+ +L+ + + ++++ Sbjct: 137 QVDPPTDDMKLGTLATHYDVPQQRA--HDALDDTRVLAGILRASLREAARLDLPL 189 >gi|187925051|ref|YP_001896693.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN] gi|187716245|gb|ACD17469.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans PsJN] Length = 383 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + RI E+G VE+ + + + P + +L GIT+ Sbjct: 16 VFVDLETTGGSTAEHRITEVGVVEIGPAGVS--RWSSLVDPQ-QPIPSFIQQLTGITNAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 ++ P+F I E + N ++AHNA FD GF+ E + Sbjct: 73 VRGAPTFDVIAPELFKRLNG--KLFVAHNASFDRGFLRGEFR 112 >gi|120553208|ref|YP_957559.1| DNA polymerase III subunit epsilon [Marinobacter aquaeolei VT8] gi|120323057|gb|ABM17372.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei VT8] Length = 240 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 2/133 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL++ I+ IG V L + + + + P ++ +HGIT Sbjct: 51 VALDFETTGLEADQHSIVSIGLVPFTLTGIQLGQCWHQVVRP-RLPLHKTSVTIHGITHS 109 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P + ++ N + N + + + + + + Sbjct: 110 EIENAPDLEDVLDPLFEHLNGRIPVVHYRNIERPFLNTALQWRLNEQLRFPVIDTMAIEA 169 Query: 129 IARRKHPSSRNDL 141 SR Sbjct: 170 HLHPNRNPSRWQQ 182 >gi|258545959|ref|ZP_05706193.1| ribonuclease T [Cardiobacterium hominis ATCC 15826] gi|258518837|gb|EEV87696.1| ribonuclease T [Cardiobacterium hominis ATCC 15826] Length = 212 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 15/185 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G D+K D ++E+ AV L+++ + R T + P G PEALK+ Sbjct: 16 VVIDVETGGFDAKKDALLELAAV-LVNFDENQRLCRTHTIHYHIHPFPGANIDPEALKIT 74 Query: 64 GITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 GI F + + + HNA FD+GFINA +R + Sbjct: 75 GIDPYHPLRPAYHEDKAAERFFDEIRAYQKQQECTRSILVGHNATFDLGFINALAERTDY 134 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +++ + L + ++ G HGA D+ L +D++ ++ Sbjct: 135 KRNPFHPFSVLDTVSLGALAYGQTVLARIARQGGFEYDSSKAHGAKYDAELTADIFCHIV 194 Query: 176 VGGSQ 180 ++ Sbjct: 195 NTWAE 199 >gi|323439142|gb|EGA96870.1| DNA polymerase III alpha chain [Staphylococcus aureus O11] gi|323441573|gb|EGA99223.1| DNA polymerase III alpha chain [Staphylococcus aureus O46] Length = 157 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 9/127 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI+ + D ET + K I +G V+++D T TF + P S + + Sbjct: 1 MIQDA---FVALDFET--ANGKRTSICSVGMVKVIDSQIT-ETFHTLVNPQD-YFSQQNI 53 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K+HGI E +++ P+F +F F + +AHNA FD+ ++ +Q I + Sbjct: 54 KVHGIQPEDVENAPTFDYVFPYMMQFIAD--LPVVAHNAAFDMNVLHQSIQNIGLPTPNL 111 Query: 121 SRIIDTL 127 + Sbjct: 112 TYFCSYQ 118 >gi|251779366|ref|ZP_04822286.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083681|gb|EES49571.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 309 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 64/178 (35%), Gaps = 8/178 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + P + P + +HGI Sbjct: 1 MNFVAIDFET--ANEKRNSPCSIGIVVVKDGKIIEEV-HHLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D+ F ++ + +FNE IAHNA FD+ + L+ N + I Sbjct: 58 PRMVQDELEFDKVWEKIKHYFNE--NLVIAHNASFDISVLRNTLELYNIEMPSFQYICTM 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 LN++ G H AL D+ ++ + + + + Sbjct: 116 KLSKNFYSNLDNARLNTVNNFLG---YEFKHHDALADAMACGNILLNICEELNTRDIN 170 >gi|268592614|ref|ZP_06126835.1| ribonuclease T [Providencia rettgeri DSM 1131] gi|291311752|gb|EFE52205.1| ribonuclease T [Providencia rettgeri DSM 1131] Length = 214 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 13/195 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L D + + T + P G P AL G Sbjct: 20 VVIDVETGGFNAKTDGLLEIAAITLKMDKDGWLSMDETLHFHVEPFEGANLEPSALAFTG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + + A +AHNA FD F+ +R Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKVIRKGMKNTDCNRAIIVAHNANFDHSFVMNAAERAGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI + HGAL D++ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVFGQTILAKACVSAGIPFDGKQAHGALYDTNRTALLFCEIVN 199 Query: 177 GGSQINFGFKTNEDR 191 ++ E + Sbjct: 200 KWKKLGGWPIIEESQ 214 >gi|330979930|gb|EGH78228.1| exonuclease [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 95 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSP 57 R +V D+ET+GL+ D+++ IGAV + D + + F+ L + + + Sbjct: 42 RWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPA 93 >gi|291544952|emb|CBL18061.1| DNA polymerase III, alpha subunit (gram-positive type) [Ruminococcus sp. 18P13] Length = 176 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 9/170 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ET + NDR+ IG + D F + P KL GI + Sbjct: 4 YIVFDVET--PNRSNDRMSAIGISAIKDNKIVANYF-SLVDPETH-FDYFNTKLTGIDAD 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K P+F+ ++ + ++ +AHNA F++ + A L+ ++ + + Sbjct: 60 KVKGAPNFAELWKKIDPIMSK--GILVAHNAVFNMSVLRACLRDYGISWKPTAKYLCMVR 117 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 I RR P +++LN +C YG H A DSH +++ ++ + G Sbjct: 118 IGRRVLPDMKHNLNVMCDHYG---IALDHHQADSDSHACAEILLRYIESG 164 >gi|332366322|gb|EGJ44074.1| DNA polymerase III [Streptococcus sanguinis SK1059] Length = 267 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V + + T +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ + A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ + L +LC IS + H AL D+ + +++K+ + Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172 Query: 182 NFGF 185 Sbjct: 173 PKAL 176 >gi|332362812|gb|EGJ40606.1| DNA polymerase III [Streptococcus sanguinis SK355] Length = 814 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V + + T +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ + A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ + L +LC IS + H AL D+ + +++K+ + Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172 Query: 182 NFGF 185 Sbjct: 173 PKAL 176 >gi|328945970|gb|EGG40117.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK1087] Length = 814 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V + + T +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ + A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ + L +LC IS + H AL D+ + +++K+ + Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172 Query: 182 NFGF 185 Sbjct: 173 PKAL 176 >gi|327473768|gb|EGF19186.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK408] Length = 814 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V + + T +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ + A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ + L +LC IS + H AL D+ + +++K+ + Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172 Query: 182 NFGF 185 Sbjct: 173 PKAL 176 >gi|327459895|gb|EGF06235.1| DNA polymerase III [Streptococcus sanguinis SK1057] Length = 814 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V + + T +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ + A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ + L +LC IS + H AL D+ + +++K+ + Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172 Query: 182 NFGF 185 Sbjct: 173 PKAL 176 >gi|325689970|gb|EGD31974.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK115] Length = 814 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V + + T +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ + A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ + L +LC IS + H AL D+ + +++K+ + Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172 Query: 182 NFGF 185 Sbjct: 173 PKAL 176 >gi|268319456|ref|YP_003293112.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785] gi|262397831|emb|CAX66845.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785] Length = 938 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 3/92 (3%) Query: 9 KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++ D II+ G + +T+ + P+ R+ L I++ Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKKRKVV-KTYSFLINPH-REIPQAVENLTHISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 E + FS + N Sbjct: 68 EDVAKAHDFSYYAPKIRKILENTIFVAHNVNF 99 >gi|256390076|ref|YP_003111640.1| exonuclease RNase T and DNA polymerase III [Catenulispora acidiphila DSM 44928] gi|256356302|gb|ACU69799.1| Exonuclease RNase T and DNA polymerase III [Catenulispora acidiphila DSM 44928] Length = 204 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 5/141 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ET+G I+E+ V + + ++ L P G A ++HGIT E Sbjct: 12 YAVVDVETSGFQPPIAEILEVAIVHVDATGQVTGSWDSLLRPQG---GVGATRVHGITRE 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + E + +AHN FD F+ + R+ + + TL Sbjct: 69 MVEPAPRFEDVGMELHGLLVD--RVVVAHNLAFDAKFLVTQFARLGVHSPEIAGGACTLR 126 Query: 129 IARRKHPSSRNDLNSLCKRYG 149 ++ P L C+ G Sbjct: 127 TSQAMLPGPSYKLLDCCEAVG 147 >gi|305665420|ref|YP_003861707.1| DNA polymerase III subunit alpha [Maribacter sp. HTCC2170] gi|88710175|gb|EAR02407.1| DNA polymerase III alpha subunit [Maribacter sp. HTCC2170] Length = 1478 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 36/250 (14%), Positives = 76/250 (30%), Gaps = 31/250 (12%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + + R I+I + + + P+G + Sbjct: 2 YLIFDTETTGLPKRWNAPITDTDNWPRCIQIAWQLHDEMGNLVESQDYLVQPDGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A ++HGI+ E + + E ++ + + N FDV + AE R+ + Sbjct: 62 AEQIHGISTELAAQEGVPLAEVLEKFNVAMSKTKFIVGQNVGFDVNIMGAEFHRMGVENP 121 Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + Y H A D + Sbjct: 122 LQELPVLDTCTEESALLCQIPGGRGGKFKLPTLTELHEYLFNAPFAEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 +++++ G D F + I L+ + + + Sbjct: 182 CFLELVRRGHYTIEQLDVQPDYFKNFSEVHPQTIELIGLKHINLKKAS-----------K 230 Query: 230 TLGKNAIWDR 239 + +A+W++ Sbjct: 231 KIA-DALWEK 239 >gi|325579056|ref|ZP_08149012.1| ribonuclease T [Haemophilus parainfluenzae ATCC 33392] gi|325159291|gb|EGC71425.1| ribonuclease T [Haemophilus parainfluenzae ATCC 33392] Length = 229 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G D+K D ++E+ A+ L ++ + P G +PE+LK +G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDGNGNLHPDQKCHFHIEPFEGANINPESLKFNG 82 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + Q + +AHNA FD F+ A +R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRGQKDAECQRSIIVAHNAAFDQSFVMAAAERTGVK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I + H AL D+ ++++ M+ Sbjct: 143 RNPFHPFGMFDTATLAGFMFGQTVLVKACQAAKIPFDGKQAHSALYDTERTAELFCYMVN 202 Query: 177 GGSQIN 182 ++ Sbjct: 203 HLKELG 208 >gi|319954745|ref|YP_004166012.1| exonuclease rnase t and DNA polymerase iii [Cellulophaga algicola DSM 14237] gi|319423405|gb|ADV50514.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga algicola DSM 14237] Length = 220 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALK 61 V D ETTG D NDRI+ IGAV+L+ F+VF+ + Sbjct: 38 VLDTETTGFDYSNDRILCIGAVKLVQQQIAIRDGFEVFVTQQVYGKDAAPIH 89 >gi|237746008|ref|ZP_04576488.1| exonuclease [Oxalobacter formigenes HOxBLS] gi|229377359|gb|EEO27450.1| exonuclease [Oxalobacter formigenes HOxBLS] Length = 305 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 69/239 (28%), Gaps = 29/239 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL S+ D IIE+G V +F P+ +K L D Sbjct: 57 VFLDTETTGLSSETDVIIELGLVR--------ASFS----PSKKKLVSLDAILSAYEDPG 104 Query: 70 LKDKPSFSSIFSEFWD-----FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 P + + + +E+ NA V A + + Sbjct: 105 KPLSPFITELTGITDEKVRGQRIDEKTVAGFLENAALIVAHNAAFDRPFFEKRFKGFDDR 164 Query: 125 DT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 S+A S L + + H A LD L+ ++ + + + Sbjct: 165 KWACSLAGINWNSLGFKNLKLEELLLKSGYFYEAHRASLDCLALAWLFHVQNRAFADLLY 224 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKR-----------DKPLFTRITKEELDEHDKTIQTL 231 + SL R ++ + I +EEL + L Sbjct: 225 QAEKKTVTVRAFGAPFEVRDSLKTRGYRWHDGTTGPNRHWWKEIPEEELAAEKNFLDEL 283 >gi|8134659|sp|O54364|RNT_PASHA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|2731432|gb|AAB93471.1| RNAse T [Mannheimia haemolytica] Length = 216 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET GL+++ D ++E+ A+ L Y ++ + P G +PE+LK +G Sbjct: 23 VVIDVETAGLNAQTDALLELAAITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNG 82 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINK 115 I + P + + Q +AHNA D GF ++RIN Sbjct: 83 IDIDNPLRGAVAENIAIPGMFIMVRKAMKEQGCQRGVIVAHNAASDPGFFYRAAIKRINA 142 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + L C+ I + H AL D+ ++++ M+ Sbjct: 143 KRDPFHPFAMFDTATLAGFMYGQTVLVKACQVAKIPFDGKQAHSALYDTERTAELFCAMV 202 Query: 176 VGGSQIN 182 + Sbjct: 203 NRLKDLG 209 >gi|269961702|ref|ZP_06176063.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833567|gb|EEZ87665.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 239 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+ + + II IG V + + + P K E++ +HGIT Sbjct: 49 FVALDFETTGLNPQKNGIITIGLVPFNLNRIFLRQAKHWKVRPQ-EKLDEESVIIHGITH 107 Query: 68 EFLKDKP 74 L D P Sbjct: 108 SELIDAP 114 >gi|227890026|ref|ZP_04007831.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC 33200] gi|227849470|gb|EEJ59556.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC 33200] Length = 938 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 3/92 (3%) Query: 9 KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++ D II+ G + +T+ + P+ R+ L I++ Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKKRKVV-KTYSFLINPH-REIPQAVENLTHISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 E + FS + N Sbjct: 68 EDVAKAHDFSYYAPKIRKILENTIFVAHNVNF 99 >gi|224417820|ref|ZP_03655826.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] gi|253827160|ref|ZP_04870045.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] gi|313141361|ref|ZP_07803554.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] gi|253510566|gb|EES89225.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] gi|313130392|gb|EFR48009.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] Length = 247 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 5/117 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + DIET G + + IEIGA+ +F F+ + KL GIT Sbjct: 70 RFCIVDIETNGHNPFVHQPIEIGAIVYQGGKIC-ESFHSFV--FCEEIPEYITKLTGITS 126 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 L+ P + F + ++AHN FD F++ L L R+ Sbjct: 127 PMLEKAPKIHQVLESF--KLFLSDCVFVAHNVNFDYQFLSNALYHYGFGYLYNPRLC 181 >gi|33593048|ref|NP_880692.1| putative exonuclease [Bordetella pertussis Tohama I] gi|33563423|emb|CAE42302.1| putative exonuclease [Bordetella pertussis Tohama I] gi|332382461|gb|AEE67308.1| putative exonuclease [Bordetella pertussis CS] Length = 224 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 22/49 (44%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 +V D+ETTGL I+E AV + + R F + +GR Sbjct: 57 FVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVRTDGRVLPF 105 >gi|152990271|ref|YP_001355993.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2] gi|151422132|dbj|BAF69636.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2] Length = 197 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 62/176 (35%), Gaps = 4/176 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGLD KND I+ I + + D ++ + L P + S +++K+H + Sbjct: 25 VFIDCETTGLDPKNDEILSIACLPVKKDKILLSKALYLELKPQ-KDISAQSIKIHHLRAC 83 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ F +N + +FDV I+ ++ L +I + Sbjct: 84 DLQGAMEPKEAIERVLYFI--KNRPVAGYYVEFDVKMISKYTKKFFGFTLPNKQIEVSGL 141 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 K + L + + K A + + + + +G Sbjct: 142 YYDYKQKAIPQGFIDLKFDTILKDLNLPKLKAHNALNDTIMSAMIYLKLIKRRQYG 197 >gi|167645985|ref|YP_001683648.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31] gi|167348415|gb|ABZ71150.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31] Length = 296 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 57/228 (25%), Gaps = 11/228 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTGLD++ D IIE+ + R ++V +G + + + Sbjct: 44 FVDVETTGLDTRRDEIIELAMIPFRYG-LVGRIYEVMEPFHGYRQPARPISAEITALTGI 102 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D A + + + + + + Sbjct: 103 DDAMVEGQSIDPEAVAAFAAPAALVIAHNASFDRRLLERFSPVFQTKPWACSMSQIDWKD 162 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL------SDVYIKMMVGGSQINFG 184 L + + + A ++ +++ ++ Sbjct: 163 EGHEGVKLAYLAAGAGFFYDRHRATNDCAAAIELLARDLPKSGQPALARLLEQARTPSWR 222 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRD----KPLFTRITKEELDEHDKTI 228 F ++K D + + + + + D + Sbjct: 223 IWAENSPFAMKDKLKARGYRWSGDDAVPSRCWYVDVAEADKDAELLFL 270 >gi|170755669|ref|YP_001779899.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str. Okra] gi|169120881|gb|ACA44717.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str. Okra] Length = 309 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 72/215 (33%), Gaps = 17/215 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +KD+ F I+ + D+F N IAHNA FD+ + + L+ N I Sbjct: 58 PHMVKDELEFDKIWQKIKDYF--NNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTM 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-- 184 LN++ G H AL D+ S++ + + + N Sbjct: 116 KLSKNFYSNIDNARLNTINNFLG---YKFKHHDALADAMACSNILLNISKELNSKNINEI 172 Query: 185 -------FKTNEDRFFKEEKKTVPNISLLKRDKPL 212 + +K + R P Sbjct: 173 SKLIGVTLGYVNENGYKPSSTKGRILKRSNRQAPR 207 >gi|241589662|ref|YP_002979687.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii 12D] gi|240868374|gb|ACS66033.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii 12D] Length = 330 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 60/170 (35%), Gaps = 8/170 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D ETTGL + D ++E+ ++ F+ + PN P A +HGIT Sbjct: 159 RTVYLDTETTGLSAASGDELLELAVIDDAGKVL----FETLIRPNHLTEWPAAQVIHGIT 214 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + PS S++ E + NA FD+GF+ L+ + K + Sbjct: 215 PADVAGAPSLSAVLQGLAAAI-EGAEALVIFNADFDLGFLPEPLRPLAKQKARCAMQAFA 273 Query: 127 LSIARRKHPSSRNDLNS--LCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L + + H A D+ + V+ + Sbjct: 274 LWCGEWDDYRYSYRWQNLQQAAAIAGHVWEGRAHRARADAFAVRTVWHWL 323 >gi|153006661|ref|YP_001380986.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] gi|152030234|gb|ABS28002.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] Length = 200 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 4/110 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLC-PNGRKNSPEALKLHGITDE 68 D+ET GLD++ D II IG + + + + + P GR P++++ H + Sbjct: 15 ALDLETGGLDARRDPIIAIGMLPIRHGTLRLGEAYYSLVRPPPGRIIDPDSVRAHQLVAG 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 L++ P+ + E E + H+ DV F+ +R Sbjct: 75 ELREAPAIGEVLREVDRRLRE--GVLLVHHRALDVAFLKDAYRRCGMRWP 122 >gi|310830415|ref|YP_003965516.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2] gi|309249882|gb|ADO59448.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2] Length = 193 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 8/128 (6%) Query: 7 MRKIVFDIETTGLDSKNDR-----IIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEAL 60 M I+ D+E T +NDR IIEIGAV+L D+ FQ F+ P S + Sbjct: 1 MNYIIVDLEAT--CWENDRSKRNEIIEIGAVKLDDHLNVVSEFQAFVKPKLYPQLSEFCM 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L I + +F ++ +F + + +L + L Sbjct: 59 QLTSIEQHDVDHAATFETVLEDFQSWMGSNYWLCSWGYYDKKQLKSDCDLHKQPTSWLRN 118 Query: 121 SRIIDTLS 128 I Sbjct: 119 HISIKHQH 126 >gi|251772732|gb|EES53294.1| DNA polymerase III, epsilon subunit [Leptospirillum ferrodiazotrophum] Length = 288 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 5/109 (4%) Query: 11 VFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTGL +ND RI+EIG + + D + P G P ++HGI D Sbjct: 33 FVDVETTGLLFENDARIVEIG-ISVWDSFGLKERMTSLINP-GSPIPPMYTRIHGIDDVM 90 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 ++ P+F + + Q IAHN FD+G IN EL R + PL Sbjct: 91 VEHSPTF--LEFWMENGIRFQGKVVIAHNLSFDMGMINRELMRRDMAPL 137 >gi|229844583|ref|ZP_04464723.1| ribonuclease T [Haemophilus influenzae 6P18H1] gi|229812832|gb|EEP48521.1| ribonuclease T [Haemophilus influenzae 6P18H1] gi|301169030|emb|CBW28627.1| ribonuclease T (RNase T) [Haemophilus influenzae 10810] Length = 229 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G D+K D ++E+ A+ L Y ++ + P G +PE+LK +G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + Q + +AHNA FD F+ A +R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAERTGVK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L C I + H AL D+ + ++ M+ Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACLAAKIPFDGKQAHSALYDTERTAKLFCYMVN 202 Query: 177 GGSQIN 182 + Sbjct: 203 HLKDLG 208 >gi|327469619|gb|EGF15088.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK330] Length = 814 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 8/180 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V + + T +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ + A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ + L +LC IS + H AL D+ + +++K+ + Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCNLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172 >gi|12044881|ref|NP_072691.1| DNA polymerase III PolC [Mycoplasma genitalium G37] gi|1352298|sp|P47277|DPO3_MYCGE RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|3844641|gb|AAC71247.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma genitalium G37] gi|166078825|gb|ABY79443.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic Mycoplasma genitalium JCVI-1.0] Length = 1451 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 63/189 (33%), Gaps = 5/189 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL + D +IE A ++ + S+ Q FL Sbjct: 416 FVIFDIETTGLHGRYDDVIEFSARKIKNNSEI-DHQQFFLK---IDKPIPKTITEITKIT 471 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +AHN + +IDTL Sbjct: 472 DEMLEGGIDQQQGLEKIRNYLDDCVMVAHNGINFDLPFLQTQFEKYNIKPLTNPLIDTLC 531 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++ +P S + L+++C + + H A D+ L V+ ++ T Sbjct: 532 LSWALNPLFSSHTLSNICSKLKLEFDDERLHRAEYDTEALKKVFFYFKKQLKEMGINTLT 591 Query: 188 NEDRFFKEE 196 D+ ++ Sbjct: 592 EIDQNLNKK 600 >gi|328958152|ref|YP_004375538.1| DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4] gi|328674476|gb|AEB30522.1| DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4] Length = 177 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 5/167 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + I + + + + P +++HGIT Sbjct: 1 MNFVALDFET--ASHQRHSACSIALTVVKNSQIV-DHYYSLIKPETEFF-WRNVQIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ ++ PSF E F ++N +AHN FD G + L + Sbjct: 57 EDDVQTAPSF-PEVWEKIKPFFKENKLIVAHNLPFDRGVLQGCLDYYQLQQPHFQTLCTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 S + + LN++C GI + + ++ +Y++ Sbjct: 116 QSSRKLITEIPNHKLNTVCDHLGIRLDNHHNALEDSNACAAILLYLE 162 >gi|326335468|ref|ZP_08201655.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692234|gb|EGD34186.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 453 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 7/172 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI T+R F + P +K L GI+++ Sbjct: 2 YAILDIETTGGKLNEESITEIAIYRFDGNEVTDR-FISLINPE-KKIDDFVAHLTGISNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P F + + +AHNA FD + E +R+ D I T+ Sbjct: 60 MVRNAPKFYEVAKRIIE--ITDGCIIVAHNAAFDYRILRLEFRRLGFD--FHRNTICTVE 115 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +++R P + R + I +H A D+ ++ ++ +Q Sbjct: 116 MSQRLLPQESSYSLGKLTRS-LGIPLLGRHRANGDAMATVHLFKLLLTKDTQ 166 >gi|167623615|ref|YP_001673909.1| ribonuclease T [Shewanella halifaxensis HAW-EB4] gi|167353637|gb|ABZ76250.1| ribonuclease T [Shewanella halifaxensis HAW-EB4] Length = 231 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIG--AVELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI +++ D ++T + P G PEAL G Sbjct: 20 VVIDVETAGFNAKTDALLEIAVSMLKMDDEGVLSLDKTLHFNIEPFEGSNLEPEALAFTG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + +AHNA FD GF+ ++R Sbjct: 80 IDPTSPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVTQAIERNALK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A L C GI +R H AL D+ ++++ ++ Sbjct: 140 RTPFHPFATFDTAALAGLAIGHTVLAKACAMAGIAFDNREAHSALYDTERTAELFCLIVN 199 Query: 177 GGSQIN 182 + Sbjct: 200 RWKALG 205 >gi|90412153|ref|ZP_01220159.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK] gi|90326877|gb|EAS43262.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK] Length = 238 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+ K D II IG V L+ NR + P + N + + + Sbjct: 48 FVAMDFETTGLNVKKDGIITIGLVPFTLNRVYINRAQHWIVRPRQKLNEQSVVIHNITHN 107 >gi|260768304|ref|ZP_05877238.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] gi|260616334|gb|EEX41519.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] Length = 193 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M + D ETTGL D II IG V L+ NR + P +K ++ +HGI Sbjct: 1 MEFVAMDFETTGLSVDKDEIITIGLVPFTLERIYLNRAKHWTVRP-RQKLDEHSIVIHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFF 87 T + D P S IF E + Sbjct: 60 THNDIMDAPDLSDIFEEVLEHL 81 >gi|120436992|ref|YP_862678.1| exonuclease domain-containing protein [Gramella forsetii KT0803] gi|117579142|emb|CAL67611.1| protein containing exonuclease domain [Gramella forsetii KT0803] Length = 507 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 5/160 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + + DIETTG K +RI EI + + + + + + P + L GI D Sbjct: 5 KFAITDIETTGNGIKGNRITEICVIVVQNGKVIDE-YSSLVNP-SQAIPLYIETLTGIND 62 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + + P FS I E ++ ++AHN FD I AE +++D L Sbjct: 63 EMVFNAPQFSEIADEITK--ITKDCIFVAHNVNFDYNIIRAEFASLDRDFKRKRLCTVRL 120 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 + L ++C I R + D+ + Sbjct: 121 TKKLIPG-LFSYSLGNICTSINIPHIDRHRAKGDCDATVT 159 >gi|126437831|ref|YP_001073522.1| DNA polymerase III subunit epsilon [Mycobacterium sp. JLS] gi|126237631|gb|ABO01032.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS] Length = 330 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 71/190 (37%), Gaps = 7/190 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RI+ + A+ + D ++ L P P +HG+T E L Sbjct: 19 VVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATLLNPG---VDPGPTHVHGLTAEML 75 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F I ++ + +AHN FD F+ AE + + + S + Sbjct: 76 EGAPRFGDIVADLAELLRG--RTLVAHNVGFDYSFLTAEAELVGAELPIDSVMCTVELAR 133 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R + L +L +G+ H AL D+ +L+ + + + T Sbjct: 134 RLDLGTENLRLETLAAHWGVP--QLKPHDALDDAQVLAQILKPTLARARERRAWLPTRSV 191 Query: 191 RFFKEEKKTV 200 + V Sbjct: 192 SRRRWPNGRV 201 >gi|15602853|ref|NP_245925.1| ribonuclease T [Pasteurella multocida subsp. multocida str. Pm70] gi|13431828|sp|P57896|RNT_PASMU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|12721315|gb|AAK03072.1| Rnt [Pasteurella multocida subsp. multocida str. Pm70] Length = 220 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 70/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G ++K D ++E+ A+ + D ++T + P G +PE+L+ +G Sbjct: 24 VIIDVETAGFNAKTDALLELAAITVKMNEDGLLVPDQTCHFHIEPFAGANINPESLQFNG 83 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q + +AHNA FD F+ A +R Sbjct: 84 IDIHNPLRGAVSETVAITELFKMVRKAQKAADCQRSIIVAHNAAFDQSFLMAAAERTGVK 143 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I + H AL D+ ++++ M+ Sbjct: 144 RNPFHPFGMFDTATLSGFMFGQTVLVKACQAAQIAFDGKQAHSALYDTERTAELFCYMVN 203 Query: 177 GGSQIN 182 + Sbjct: 204 HLKHLG 209 >gi|320529722|ref|ZP_08030801.1| exonuclease [Selenomonas artemidis F0399] gi|320138083|gb|EFW29986.1| exonuclease [Selenomonas artemidis F0399] Length = 221 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 68/219 (31%), Gaps = 15/219 (6%) Query: 6 KMRKIVFDIETT--GLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 +M+ IV D+E G + K N IIEIGAV L + FQ ++CP Sbjct: 2 RMKHIVVDLEMNPIGKEYKEIRRKLNGEIIEIGAVRLSEKFVQEDKFQCYVCPEYGLVKK 61 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA---KFDVGFINAELQRIN 114 +L GIT E + + F+ F F D+ + + + K ++ + Sbjct: 62 HITELTGITQEKVSGQRVFAESFKNFVDWIGASETKIYSWSMSDIKQLRKECRLKVPDFD 121 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK----HGALLDSHLLSDV 170 + LD + + R + L G + L Sbjct: 122 VNWLDMRWVDLQQAFDDRLGLHNSLALKHALGAMGRRFEGTQHSALADAINTSAVLTLMQ 181 Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209 + + + P++ LK + Sbjct: 182 DDEKFRETMRPVLEILEPSEGLSDAIGDLFPDLEKLKNN 220 >gi|325687825|gb|EGD29845.1| DNA polymerase III [Streptococcus sanguinis SK72] Length = 814 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V + + T +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIVLIENGIIT-KTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ + A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ + L +LC IS + H AL D+ + +++K+ + Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCGLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172 Query: 182 NFGF 185 Sbjct: 173 PKAL 176 >gi|260779364|ref|ZP_05888256.1| ribonuclease T [Vibrio coralliilyticus ATCC BAA-450] gi|260605528|gb|EEX31823.1| ribonuclease T [Vibrio coralliilyticus ATCC BAA-450] Length = 219 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 14/200 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L + T + P G EAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLKMDENGELQPASTIHFHVEPFEGANLEKEALDFNG 79 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + + A +AHNA FD F+ A +R Sbjct: 80 IHDPFSPLRGAVPESEALKEIYKLVRKEQKAADCSRAIMVAHNATFDHNFVMAASERSKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ ++ H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKTAGMDFDNKEAHSALYDTLKTAELFCGIV 199 Query: 176 VGGSQINFGFKTNEDRFFKE 195 + +ED + Sbjct: 200 NKWKALGGWPLIDEDAENNK 219 >gi|108801863|ref|YP_642060.1| DNA polymerase III subunit epsilon [Mycobacterium sp. MCS] gi|119871016|ref|YP_940968.1| DNA polymerase III subunit epsilon [Mycobacterium sp. KMS] gi|108772282|gb|ABG11004.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS] gi|119697105|gb|ABL94178.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS] Length = 330 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 7/190 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RI+ + A+ + D ++ L P P +HG+T E L Sbjct: 19 VVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATLLNPG---VDPGPTHVHGLTAEML 75 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F + ++ + +AHN FD F+ AE + + + S + Sbjct: 76 EGAPRFGDVVADLAELLRG--RTLVAHNVGFDYSFLTAEAELVGAELPIDSVMCTVELAR 133 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R + L +L +G+ H AL D+ +L+ + + + T Sbjct: 134 RLDLGTENLRLETLAAHWGVP--QLKPHDALDDAQVLAQILKPTLARARERRAWLPTRSV 191 Query: 191 RFFKEEKKTV 200 + V Sbjct: 192 SRRRWPNGRV 201 >gi|330895532|gb|EGH27842.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. japonica str. M301072PT] Length = 203 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 7/207 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 3 RIAVIDFETTGISPGHSCRATEIAVVIMAQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 61 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIERT--REQSFACS 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +ARR P + N RY H A+ D+ + +++ + Q + Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTAYLTNELRQTHGISA 176 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLF 213 + +K IS + + Sbjct: 177 ISHKMLCSLQKVPAAKISETLKRQRGV 203 >gi|302554712|ref|ZP_07307054.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736] gi|302472330|gb|EFL35423.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736] Length = 623 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 7/201 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ET+GL DR++ + + L F L P P + +HG+T L Sbjct: 35 VDVETSGLRPGRDRVLSLAILTLDARGNQTGEFATLLNPG---CDPGPVHIHGLTPARLA 91 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 P+F I + + +AHNA+FD F+ E + R+ Sbjct: 92 GAPTFEEIAPQVGALLSG--RVLVAHNAQFDYDFLAHEFAHVRSWVPVSRRLCTLALNRL 149 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191 + L +L YG+ H A D +LS + + ++ + Sbjct: 150 VGSATPDLKLGTLAAHYGVR--QERAHDAQDDVRVLSGILRGSLGAAERLGLSLPLLDCP 207 Query: 192 FFKEEKKTVPNISLLKRDKPL 212 ++ + VP R+ Sbjct: 208 PRQDYQPYVPKTPCAYRNPGR 228 >gi|253700819|ref|YP_003022008.1| exonuclease RNase T and DNA polymerase III [Geobacter sp. M21] gi|251775669|gb|ACT18250.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M21] Length = 312 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 19/33 (57%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44 D ETTGLD K D++IE+G V +T F Sbjct: 57 LDTETTGLDYKRDKVIELGIVAFEYDPETGEIF 89 >gi|308535281|ref|YP_002138830.2| 3'-to-5' exonuclease [Geobacter bemidjiensis Bem] gi|308052626|gb|ACH39034.2| 3'-to-5' exonuclease, putative [Geobacter bemidjiensis Bem] Length = 312 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 19/33 (57%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44 D ETTGLD K D++IE+G V +T F Sbjct: 57 LDTETTGLDYKRDKVIELGIVAFEYDPETGEIF 89 >gi|254228313|ref|ZP_04921740.1| DNA polymerase III subunit epsilon [Vibrio sp. Ex25] gi|262394378|ref|YP_003286232.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] gi|151939119|gb|EDN57950.1| DNA polymerase III subunit epsilon [Vibrio sp. Ex25] gi|262337972|gb|ACY51767.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] Length = 248 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 71/192 (36%), Gaps = 17/192 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+++ D I+ IG V +D + + + + PN R+ + E++ +HGITD Sbjct: 58 FVSVDFETTGLNAEEDAILTIGLVPFTIDRVQCSGSAHWVVNPN-RELNEESVVIHGITD 116 Query: 68 EFLKDKPSFSSIFSE------------FWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 +K+ P + I E + Q N+ + + Sbjct: 117 SEVKNAPQLTHILGEILDALSGKVVLVHYKNIERQFFNNALLNSIGEGIHFPVVDTLDIE 176 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + K P S ++ + + H AL D+ ++++ + Sbjct: 177 HAIQRRECSGLFNKLKGKKPGSVRLGHARERYR---LPAYQPHHALTDALATAELFQAQL 233 Query: 176 VGGSQINFGFKT 187 + + Sbjct: 234 QYHFNRSMPISS 245 >gi|322804522|emb|CBZ02073.1| putative DNA polymerase III epsilon chain [Clostridium botulinum H04402 065] Length = 309 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 66/212 (31%), Gaps = 11/212 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +KD+ F I+ + D+F N IAHNA FD+ + + L+ N I Sbjct: 58 PHMVKDELEFDKIWGKIKDYF--NNNLVIAHNASFDMSVLKSTLKLYNIKMPSFEYICTM 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG------SQ 180 LN++ G H + + K + Sbjct: 116 KLSKNFYSNIDNARLNTVNNFLGYKFKHHDALADAMACSNILINISKELNSKDINEISKL 175 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 I + +K + R P Sbjct: 176 IGVTLGYVNENGYKPSSTKGRILKRSNRQAPK 207 >gi|300813469|ref|ZP_07093813.1| CRISPR-associated endoribonuclease Cas2 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512418|gb|EFK39574.1| CRISPR-associated endoribonuclease Cas2 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 297 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 + N +V DIET GLD + IIEIGAV++ + F + Sbjct: 124 KNNLKPYVVIDIETDGLDFDKNLIIEIGAVKVENEKF--EEFTRLIK 168 >gi|121635139|ref|YP_975384.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18] gi|120866845|emb|CAM10604.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18] gi|325132197|gb|EGC54893.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M6190] gi|325138130|gb|EGC60703.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis ES14902] gi|325198587|gb|ADY94043.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis G2136] Length = 470 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVVGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + +AHN++FD F+ + S ++ + Sbjct: 85 DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRVGIGFSSPVLCS 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192 >gi|298208469|ref|YP_003716648.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Croceibacter atlanticus HTCC2559] gi|83848392|gb|EAP86261.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Croceibacter atlanticus HTCC2559] Length = 457 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 4/103 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + + ++ + P R P + L GI ++ Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKFDGHEVVDQVI-SLVNPE-RPIQPFVVGLTGINND 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 L++ P F I + Q+ +AHNAKFD + E + Sbjct: 60 MLRNAPKFYEIAKRILE--ITQDCILVAHNAKFDYRILRTEFR 100 >gi|312963198|ref|ZP_07777682.1| DNA polymerase III epsilon subunit [Pseudomonas fluorescens WH6] gi|311282464|gb|EFQ61061.1| DNA polymerase III epsilon subunit [Pseudomonas fluorescens WH6] Length = 203 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 75/197 (38%), Gaps = 9/197 (4%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EIG V L +R +Q + G + +L GI+ Sbjct: 3 RIAVIDFETTGITPSSHCRATEIGVVILERGHIVDR-YQSLMN-AGVRVPAFIEQLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--I 124 + L+ P + +E +F +AHNA FD F + EL I + L + Sbjct: 61 NAMLRSAPPAERVMNEVNEFVGT--TPLMAHNAAFDQKFWDYELGLIRRTRLQKFACSLL 118 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQIN 182 + LNS + +HR+ A + ++L + + ++ G +++ Sbjct: 119 LARRLMPAAPNHKLGTLNSYAQLPHTGQAHRALADAEMAANLTTHLARELRQTHGLRELS 178 Query: 183 FGFKTNEDRFFKEEKKT 199 + + Sbjct: 179 HDLLCTLQKVPAAKINE 195 >gi|307300662|ref|ZP_07580437.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti BL225C] gi|306904196|gb|EFN34781.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti BL225C] Length = 325 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 18/25 (72%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R ++ D ETTGLD++ IIEIG V Sbjct: 69 RGVILDTETTGLDARKCEIIEIGLV 93 >gi|16262589|ref|NP_435382.1| DNA polymerase III subunit epsilon [Sinorhizobium meliloti 1021] gi|307319072|ref|ZP_07598502.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti AK83] gi|14523204|gb|AAK64794.1| conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306895179|gb|EFN25935.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti AK83] Length = 325 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 18/25 (72%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R ++ D ETTGLD++ IIEIG V Sbjct: 69 RGVILDTETTGLDARKCEIIEIGLV 93 >gi|325696784|gb|EGD38672.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK160] Length = 814 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S +II+IG V + + S T +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-GAKIIQIGIVLIENGSIT-KTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ + A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ + L +LC IS + H AL D+ + +++K+ + Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCDLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172 Query: 182 NFGF 185 Sbjct: 173 PKAL 176 >gi|168182135|ref|ZP_02616799.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum Bf] gi|237793573|ref|YP_002861125.1| DNA polymerase III subunit epsilon [Clostridium botulinum Ba4 str. 657] gi|182674639|gb|EDT86600.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum Bf] gi|229262587|gb|ACQ53620.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum Ba4 str. 657] Length = 309 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 71/215 (33%), Gaps = 17/215 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFET--ANEKRNSPCSIGIVVVKDGKIVEKV-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +KD+ F I+ + +F N IAHNA FD+ + + L+ N I Sbjct: 58 PHMVKDELEFDKIWEKIKGYF--NNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTM 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-- 184 LN++ G H AL D+ S++ + + + N Sbjct: 116 KLSKNFYSSIDNARLNTVNNFLG---YKFQHHDALADAMACSNILLNISKELNSKNINEI 172 Query: 185 -------FKTNEDRFFKEEKKTVPNISLLKRDKPL 212 + +K + R P Sbjct: 173 SKLVGVTLGYVNENGYKPSSTKGRILKRSNRQAPK 207 >gi|150025957|ref|YP_001296783.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] gi|149772498|emb|CAL43981.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] Length = 453 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 7/211 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + + ++ F + P P +KL GI + Sbjct: 2 YAILDIETTGGQFNEEGITEIAIYKFDGHQIVDQ-FISLVNPE-IPIQPFVVKLTGINNA 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F + + ++ +AHN FD + E R+ D Sbjct: 60 MLVSAPKFHEVAKRIVE--ITKDCIIVAHNTVFDYRILRTEFSRLGYD---FQAKTLCTV 114 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + + + I ++H A D+ ++ ++ + + Sbjct: 115 ELAKILIPEQPSYSLGKLVRALGIPITNRHRAEGDALATVKLFKMLLDKDLEKIIVKEQI 174 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + K + NI +K I KE Sbjct: 175 KTEITKGIAPKLLNIIESLPNKTGVYYIHKE 205 >gi|119471955|ref|ZP_01614240.1| DNA polymerase III subunit epsilon [Alteromonadales bacterium TW-7] gi|119445213|gb|EAW26504.1| DNA polymerase III subunit epsilon [Alteromonadales bacterium TW-7] Length = 234 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+SK D I+ +G V L ++ + P R S ++ +HGIT Sbjct: 45 FVALDFETTGLNSKADDIVSVGLVPFTLARIYCKQSKHWVVQP-RRNLSESSIVIHGITH 103 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEW 94 + + P F +I + D + Sbjct: 104 NDVDNAPDFDNIIAPLLDALRSKVIVV 130 >gi|319948216|ref|ZP_08022374.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4] gi|319438119|gb|EFV93081.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4] Length = 240 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 20/35 (57%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 R + D+ETTGLD + DR++ +G V + R Sbjct: 44 RLLAVDVETTGLDPRRDRVVSVGFVPVDGDRIVLR 78 >gi|307578072|gb|ADN62041.1| ribonuclease T [Xylella fastidiosa subsp. fastidiosa GB514] Length = 198 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 62/183 (33%), Gaps = 13/183 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + ++EI + + + P G P++L++ G Sbjct: 11 VVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTDIDPKSLEVTG 70 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q A + HNA FD+ F+NA + R Sbjct: 71 IILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTAYK 130 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + ++ + L + G+ + H A+ D+ + ++ + Sbjct: 131 RNPFHQFSVFDTVTLAGMAYGQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFCTITN 190 Query: 177 GGS 179 Sbjct: 191 IWP 193 >gi|241767097|ref|ZP_04764869.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] gi|241362329|gb|EER58323.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] Length = 153 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 5/98 (5%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ + R E+ V L + +R FQ + G P +L GIT+ Sbjct: 7 VIDFETTGMGPGQGARATEVAIVLLDNGVVVDR-FQSLMK-TGAWIPPFITQLTGITNAM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 + P +++ E F NA +AHNA FD F Sbjct: 65 VNAAPQAAAVMREAARFV--GNAPMVAHNAAFDRKFWQ 100 >gi|319440529|ref|ZP_07989685.1| DNA polymerase III subunit epsilon [Corynebacterium variabile DSM 44702] Length = 214 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 17/30 (56%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 D+ETTGLD K DR++ IG V L Sbjct: 28 AVDVETTGLDPKRDRLLSIGWVPLDGRVID 57 >gi|313895399|ref|ZP_07828956.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430] gi|312976294|gb|EFR41752.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430] Length = 219 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 67/218 (30%), Gaps = 15/218 (6%) Query: 7 MRKIVFDIETT--GLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M+ IV D+E G + K N IIEIGAV L + FQ ++CP Sbjct: 1 MKHIVVDLEMNPIGKEYKEIRRKLNGEIIEIGAVRLSEKFVQEDKFQCYVCPEYGLVKKH 60 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA---KFDVGFINAELQRINK 115 +L GIT E + + F+ F F D+ + + + K ++ + Sbjct: 61 ITELTGITQEQVSGQRVFAESFKNFVDWIGASETKIYSWSMSDIKQLRKECRLKVPDFDV 120 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK----HGALLDSHLLSDVY 171 + LD + + R + L G + L Sbjct: 121 NWLDMRWVDLQQAFDDRLGLHNSLALKHALGAMGRRFEGTQHSALADAINTSAVLTLMQD 180 Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209 + + + P++ LK + Sbjct: 181 DEKFRETMRPVLEILEPSEGLSDAIGDLFPDLEKLKNN 218 >gi|268609211|ref|ZP_06142938.1| exonuclease [Ruminococcus flavefaciens FD-1] Length = 179 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 9/171 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R IVFD+ET + N+ + IG + D +F + P ++L GI Sbjct: 3 RYIVFDVET--PNFANNHMSAIGITVVEDGR-IADSFFSLVDPETH-FDHFNIRLTGIDP 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++ P+F+ ++ + N +AHNA FD+ + L + ++ + T+ Sbjct: 59 KKVQGAPNFAQLWQKIEPIMNS--GILVAHNAVFDMSVLKKCLSAYGIEWKSTAKYLCTV 116 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 R+ P + LN +C YG H A DS +++ ++ + G Sbjct: 117 QAGRKLLPGRGHKLNEMCDYYG---ISLDHHQADSDSRACAEILLRYIESG 164 >gi|149195052|ref|ZP_01872144.1| Exonuclease [Caminibacter mediatlanticus TB-2] gi|149134765|gb|EDM23249.1| Exonuclease [Caminibacter mediatlanticus TB-2] Length = 293 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 8/174 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I+ D ETTG + + DRI ++ + L + + + P + H Sbjct: 1 MKIIILDTETTG-NKQEDRICQLSYLVLNEDLEIEEIHNELVKPPIPISYEAMAVHHITN 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + N + HN++FD+ + E +D R++ Sbjct: 60 EMVEDKPQIKFTNSYKRLKELNSPENIIVIHNSEFDLEMLRKEGFNPFFKLIDTFRVLKH 119 Query: 127 LSIARRKHPSSRND-------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + +CK+Y ITI+ G ++ +LL + +K Sbjct: 120 ILPDGKFGLQYNRYALGLYKKEKDICKKYNITINAHDALGDVVVLYLLFEYILK 173 >gi|224476950|ref|YP_002634556.1| hypothetical protein Sca_1466 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421557|emb|CAL28371.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 185 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 9/188 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V+++D TF + PN S + + +HGI E Sbjct: 7 FVALDFET--ANGKRTSICSVGMVKVVDNEIV-ETFYTLVNPND-YFSQQNINVHGIQPE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F+ + F +N +AHNA FD+ ++A +Q + D + + Sbjct: 63 DVATAPVFNFVLPYMLQFI--ENLPVVAHNAAFDMTVLHASIQALGLDTPEMTYFCSLQL 120 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R + + + + H AL D+ + + +++ +N Sbjct: 121 ARRTVNANRYGLNH---MMEYYHLDFHGHHDALNDAKACAMITFRLLKNYDSLNDMLAVY 177 Query: 189 EDRFFKEE 196 + Sbjct: 178 GKNLIDKG 185 >gi|218295556|ref|ZP_03496369.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23] gi|218244188|gb|EED10714.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23] Length = 247 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + IIE+ V L + FQ P R SP +L GIT E Sbjct: 74 VVLDLETTGLAPGLNEIIEVALVRLEGERRV--AFQSLARP-RRPPSPFIQRLTGITLEE 130 Query: 70 LKDKPS 75 L+ P Sbjct: 131 LEKAPP 136 >gi|295395919|ref|ZP_06806104.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Brevibacterium mcbrellneri ATCC 49030] gi|294971192|gb|EFG47082.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Brevibacterium mcbrellneri ATCC 49030] Length = 536 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 7/212 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDEF 69 FD+ETTG D I+ +++ T+ T++ + P G + + + Sbjct: 321 AFDLETTGRDPHTAHIVSAALIDMR----THETWEWLIYPEGEIPAEASAVHGITTEYAR 376 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 P +I F A +AHNA +D+ E L +IDTL I Sbjct: 377 ENGMPRAQAIAQIHQVFAERTPACIVAHNAPYDLTIFARECA-QYGLALPDFFVIDTLVI 435 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFKTN 188 + P + +S + H A D+ V + + ++ + Sbjct: 436 DKHAEPFRKGPRTLDAVCARWGVSLDNAHDATADARASGLVALAIADAFPELAQLSAEQI 495 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + ++ + R + + + E Sbjct: 496 HGAQKEWKRDQAARLQEYLRTRRNPNAVVEHE 527 >gi|156974173|ref|YP_001445080.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116] gi|156525767|gb|ABU70853.1| hypothetical protein VIBHAR_01887 [Vibrio harveyi ATCC BAA-1116] Length = 239 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+ + + II IG V + + + P K +++ +HGIT Sbjct: 49 FVALDFETTGLNPQKNGIITIGLVPFNLNRIFLRQAKHWKVRPQ-EKLDEDSVIIHGITH 107 Query: 68 EFLKDKP 74 L D P Sbjct: 108 SELIDAP 114 >gi|331701432|ref|YP_004398391.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus buchneri NRRL B-30929] gi|329128775|gb|AEB73328.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus buchneri NRRL B-30929] Length = 945 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 7/172 (4%) Query: 9 KIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V DIETTG D D R I+ + + +TF + P R+ ++L GIT+ Sbjct: 7 FAVVDIETTGTDISADNRTIQFSCCLVSNNKII-KTFVTDINPQ-REVPNRIVQLTGITN 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L+ +F + ++ + N ++AHN FD F+N+E QR+ L I Sbjct: 65 ERLQKAKTFDQVAAQLYSLL--NNTVFVAHNVNFDFPFLNSEFQRVGYPELQIEAIDTVT 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 S L L + I H H A D+ + + + ++ Sbjct: 123 LSQILLPTLSSYRLQDLSSYFNIEHDHP--HTADSDALATAKLLLILLRQIK 172 >gi|331082129|ref|ZP_08331257.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405724|gb|EGG85254.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium 6_1_63FAA] Length = 405 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 66/205 (32%), Gaps = 7/205 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ET + NDRI + L+ + + + + P R L GI Sbjct: 112 YIAFDVET--PNKNNDRI-SYAGILLVCNGEIIKNYSTLINPETR-FDHFNTVLTGIDAS 167 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+F + D F + IAHNA FD+ ++ L + Sbjct: 168 AVCHAPTFKEYWPSIEDLFKK--YVIIAHNANFDLSVLSKTLLHYGLKVPPIKYVCTYNE 225 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + + L S+ + + I + + + IK F+ + Sbjct: 226 SRNKFPQLGKYSLKSMAEYFDIPLENHHDAKSDAQVCSSIFEAIKSQNYMFTPK-EFEFH 284 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLF 213 E++ + N+ L Sbjct: 285 EEKTSEFNISPATNVETFALPYSLP 309 >gi|296283456|ref|ZP_06861454.1| exonuclease, RNase T and DNA polymerase III [Citromicrobium bathyomarinum JL354] Length = 261 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 24/211 (11%), Positives = 56/211 (26%), Gaps = 11/211 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT------FQVFLCPNGRKNSPEALKLHGI 65 D+ETT LD IIE+ A+EL+ S + P + Sbjct: 16 VDVETTSLDPATGEIIEL-AIELVWISHEGEVEAQLGPWSWLNDPGEPLTPEISTITGLH 74 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+ + + D + + + + Sbjct: 75 DDDLRGQAIDDRKVRALLGRADWLCAHNARFDVQWIDRRYPEFADKPWACSCSEIAWADL 134 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISH----RSKHGALLDSHLLSDVYIKMMVGGSQI 181 + +++ L R G + + DS + + +++ +Q Sbjct: 135 GFEGRSQPFLLAQHGLFGRAHRAGDDVWSLLQLLQQRRPDPDSLQVRSHFARLLEHAAQP 194 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 + + F +++ R++ Sbjct: 195 SVKLSASGAPFAAKDELKARGYRWNARERVW 225 >gi|54303407|ref|YP_133400.1| putative DNA polymerase III [Photobacterium profundum SS9] gi|46916837|emb|CAG23600.1| putative DNA polymerase III [Photobacterium profundum SS9] Length = 236 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 55/168 (32%), Gaps = 4/168 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + D ETTGL+ + D+I+ IG V L D + + ++++ +G E+ +++ IT Sbjct: 50 NFVAIDFETTGLNCQQDKILSIGVVNLTTDMIELASSEEIYIR-HGEFIKAESAQINEIT 108 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + L + + + N + + Sbjct: 109 PKQLHKGVDIDTAIDWLLERIQGKIVLAHCANIEKQFIESYLKDTYQLNTFPCYFIDTLQ 168 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYI 172 L S + + + H A D+ +++++ Sbjct: 169 LEKHHSYAGKSNQHTSYQLDDLRQYHNLPAYYSHSAASDAVACAELFL 216 >gi|119944727|ref|YP_942407.1| DNA polymerase III subunit epsilon [Psychromonas ingrahamii 37] gi|119863331|gb|ABM02808.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas ingrahamii 37] Length = 238 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + D ETTGLDS+ + II IG V + + ++ P + Sbjct: 48 FVALDFETTGLDSQQNGIISIGLVPFNLQRIFCRKVKEWYINPQDNLQENSIIIHG 103 >gi|71901523|ref|ZP_00683608.1| Ribonuclease T [Xylella fastidiosa Ann-1] gi|71728710|gb|EAO30856.1| Ribonuclease T [Xylella fastidiosa Ann-1] Length = 210 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 62/183 (33%), Gaps = 13/183 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + ++EI + + + P G P++L++ G Sbjct: 23 VVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTDIDPKSLEVTG 82 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q A + HNA FD+ F+NA + R Sbjct: 83 IILDHPFRFAKEEKLALEHIFTPVRATMKKYKCQRAILVGHNAHFDLNFLNAAVTRTAYK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + ++ + L + G+ + H A+ D+ + ++ + Sbjct: 143 RNPFHQFSVFDTVTLAGMAYGQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFCTITN 202 Query: 177 GGS 179 Sbjct: 203 IWP 205 >gi|256822949|ref|YP_003146912.1| ribonuclease T [Kangiella koreensis DSM 16069] gi|256796488|gb|ACV27144.1| ribonuclease T [Kangiella koreensis DSM 16069] Length = 200 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 72/201 (35%), Gaps = 21/201 (10%) Query: 1 MIRKNKMRK-------IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLC 49 MI + M++ ++ D+ET G ++ D ++E+ AV + ++ + Sbjct: 1 MINLS-MKERFRGFFPVIIDVETGGFNAATDALLELAAVTTGFNEQGKLEIKNSYHFNVE 59 Query: 50 P-NGRKNSPEALKLHGITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK 100 P G +AL GI + K S + HN+ Sbjct: 60 PFEGANIEQKALDFTGIDPDNPLRGAISEHKALKSLFKDLRTEQKDAECNRCVLVGHNSW 119 Query: 101 FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 FD+ F+NA +R++ + + L C GI S + H A Sbjct: 120 FDLSFLNAASERVDIKRNPFHPFTSFDTASLSALMLGHTVLAQACDLAGIEFSQKEAHSA 179 Query: 161 LLDSHLLSDVYIKMMVGGSQI 181 L D+ ++++ ++ +Q Sbjct: 180 LYDATKTAELFCLLVNRANQF 200 >gi|15838737|ref|NP_299425.1| ribonuclease T [Xylella fastidiosa 9a5c] gi|24638168|sp|Q9PBJ8|RNT_XYLFA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|9107281|gb|AAF84945.1|AE004029_5 ribonuclease T [Xylella fastidiosa 9a5c] Length = 211 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 62/183 (33%), Gaps = 13/183 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + ++EI + + + P G P++L++ G Sbjct: 24 VVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTDIDPKSLEVTG 83 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q A + HNA FD+ F+NA + R Sbjct: 84 IILDHPFRFAKEEKLALEHIFTPVRATMKKYKCQRAILVGHNAHFDLNFLNAAVTRTAYK 143 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + ++ + L + G+ + H A+ D+ + ++ + Sbjct: 144 RNPFHQFSVFDTVTLAGMAYGQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFCTITN 203 Query: 177 GGS 179 Sbjct: 204 TWP 206 >gi|54309681|ref|YP_130701.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9] gi|46914119|emb|CAG20899.1| putative DNA polymerase III, epsilon subunit [Photobacterium profundum SS9] Length = 239 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL++K D II IG V L+ NR + P + N + + + Sbjct: 49 FVAMDFETTGLNAKKDGIITIGLVPFTLNRVYINRAQHWTVRPRQKLNEQSVVIHNITHN 108 >gi|301155716|emb|CBW15184.1| ribonuclease T (RNase T) [Haemophilus parainfluenzae T3T1] Length = 229 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G D+K D ++E+ A+ L + ++ + P G +PE+LK +G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGNLQPDQKCHFHIEPFEGANINPESLKFNG 82 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + Q + +AHNA FD F+ A +R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRGQKDAECQRSIIVAHNAAFDQSFVMAAAERTGVK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I + H AL D+ ++++ M+ Sbjct: 143 RNPFHPFGMFDTATLAGFMFGQTVLVKACQAAKIPFDGKQAHSALYDTERTAELFCYMVN 202 Query: 177 GGSQIN 182 + Sbjct: 203 HLKDLG 208 >gi|226330322|ref|ZP_03805840.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198] gi|225201117|gb|EEG83471.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198] Length = 212 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + K + T + P G P AL+ G Sbjct: 20 VVIDVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVEPFEGANLEPAALEFTG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + + A +AHNA FD F+ A +R Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKMVRKGMKDADCNRAIIVAHNANFDHSFVMAAAERAGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI + HGAL D++ S ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTILAKACITAGIPFDSKLAHGALYDTNRTSLLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKKLG 205 >gi|296273686|ref|YP_003656317.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM 7299] gi|296097860|gb|ADG93810.1| DNA polymerase III, epsilon subunit [Arcobacter nitrofigilis DSM 7299] Length = 279 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 79/210 (37%), Gaps = 12/210 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIET G + ++IEIGAV+L + +++ + + P ++ IT L Sbjct: 81 IVDIETNGSNVNKGQVIEIGAVKLKNGEII-DSYESLV--YAKDVPPYIQEVTNITPSML 137 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD P ++ EF ++ ++AH+ KFD FI+ ++ N L ++ Sbjct: 138 KDAPVLKTVLEEF--KIFLEDDVFVAHDIKFDYRFISESFKKYNLGELHNRKLCTIDLSK 195 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R + + I ++H A D+ + + + + + + Sbjct: 196 RTIEAQRYGLDF---LKDLLHIDIDTQHRAYSDALSTTYILKESLSKLPEKILTAEDLIA 252 Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + N + + T++E Sbjct: 253 FSKSDNIINSKNNQAKQNRENK----TEKE 278 >gi|114776398|ref|ZP_01451443.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans PV-1] gi|114553228|gb|EAU55626.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans PV-1] Length = 310 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 26/46 (56%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 V D ETTGLD+ D IIE+G V + + R ++V +G ++ Sbjct: 41 VIDTETTGLDTTADTIIELGFVAFSYDAGSGRIYEVLHNYDGFEDP 86 >gi|119896359|ref|YP_931572.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] gi|119668772|emb|CAL92685.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] Length = 231 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 5/100 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D ETTG+ + R EI V + + +R +Q + G E L GIT+ Sbjct: 31 YAVIDFETTGMAPEHGARPTEIAVVLVRNGCVIDR-YQSLMN-AGVHVPYEIQALTGITN 88 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ++ P + + ++ DF +AHNA FD F + Sbjct: 89 AMVRAAPPLAQVMAQAADFVGS--HALVAHNAAFDRKFWD 126 >gi|326314849|ref|YP_004232521.1| DNA-directed DNA polymerase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371685|gb|ADX43954.1| DNA-directed DNA polymerase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 222 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 5/100 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R E+ V + + +R FQ + G P ++L GIT Sbjct: 5 RIAVIDFETTGMTPSQGARATEVAIVLMEEGRPVDR-FQSLMK-TGAWLPPFIVQLTGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 L P S+ E F + AHNA FD F Sbjct: 63 PAMLDTAPPAESVMREAARFVGDAPMV--AHNASFDSRFW 100 >gi|119504386|ref|ZP_01626466.1| ribonuclease T [marine gamma proteobacterium HTCC2080] gi|119459894|gb|EAW40989.1| ribonuclease T [marine gamma proteobacterium HTCC2080] Length = 216 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 70/201 (34%), Gaps = 20/201 (9%) Query: 2 IRKNKMR-------KIVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP 50 + +MR ++ D+ET G ++ D ++E+ A + + D + T + P Sbjct: 4 MPDYRMRDRFRGFLPVIVDVETGGFNAATDALLEVAATLIHVDDRGEVVLGDTISFNVEP 63 Query: 51 -NGRKNSPEALKLHGITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 G AL+ GI E + + A + HNA F Sbjct: 64 FEGANIEASALEFTGIDPENPLRAALPEAIALGDLFTRIRKEVRDTGCNRAILVGHNAHF 123 Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 D GFIN+ R + + L C+R GI ++ H A Sbjct: 124 DAGFINSASLRCDIKRNPFHPFSHFDTATLAGLAFGHTVLAQACRRAGIEFNNSEAHSAA 183 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ ++ Sbjct: 184 YDATKTAELFCCIVNQWQRLG 204 >gi|282852211|ref|ZP_06261563.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri 224-1] gi|282556630|gb|EFB62240.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri 224-1] Length = 937 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 3/92 (3%) Query: 9 KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++ D II+ G + + + + P+ R+ L I++ Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKKRKVV-KIYSFLINPH-REIPQAVENLTHISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 + F+ + N Sbjct: 68 RDVAQARDFNYYAPKIRKILENTIFVAHNVNF 99 >gi|260773225|ref|ZP_05882141.1| ribonuclease T [Vibrio metschnikovii CIP 69.14] gi|260612364|gb|EEX37567.1| ribonuclease T [Vibrio metschnikovii CIP 69.14] Length = 218 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++EI A+ L T + P G AL+ +G Sbjct: 20 VVIDVETAGFNPQTDALLEICAITLCMDEQGDLHPASTLHFHIEPFEGANIEKAALEFNG 79 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + A +AHNA FD GF+ A +R Sbjct: 80 IHDPFSALRGAVTEEYALKEIYKQVRKEQKAADCSRAIIVAHNASFDHGFVMAANERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + A + L CK G+ +R H AL D+ + ++ ++ Sbjct: 140 KRVPFHPFATFDTAALSGLAYGQTVLAKACKAAGMEFDNREAHSALYDTQQTAALFCGII 199 Query: 176 VGGSQIN 182 + Sbjct: 200 NKWKALG 206 >gi|229593001|ref|YP_002875120.1| putative DNA poymerase [Pseudomonas fluorescens SBW25] gi|229364867|emb|CAY52927.1| putative DNA poymerase [Pseudomonas fluorescens SBW25] Length = 235 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 64/193 (33%), Gaps = 6/193 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALKLHGI 65 R +V D+ET+GL+ D+++ IGAV + D + ++ F+ + + + G Sbjct: 40 RWVVLDLETSGLNLNRDQVLSIGAVVIEDGAVDFSQLFERTLQRAETKLSPSVLIHGLGP 99 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + P + + ++ +A +A FD + L+ L + Sbjct: 100 SAIAAGSDPVEALLDFMA----FVGDSPLLAFHAPFDQHMLCRALKDSLGYRLAHPFLDV 155 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + + + +H A D+ +++ + + + Sbjct: 156 ADIAPLLCPQAHIREAGLDDWINHFNLHVGERHHASADALATAELMLILFSRARAQHIDT 215 Query: 186 KTNEDRFFKEEKK 198 + K+ Sbjct: 216 PQALQERLSQWKR 228 >gi|71276282|ref|ZP_00652560.1| Ribonuclease T [Xylella fastidiosa Dixon] gi|71898489|ref|ZP_00680661.1| Ribonuclease T [Xylella fastidiosa Ann-1] gi|182681822|ref|YP_001829982.1| ribonuclease T [Xylella fastidiosa M23] gi|71162890|gb|EAO12614.1| Ribonuclease T [Xylella fastidiosa Dixon] gi|71731802|gb|EAO33861.1| Ribonuclease T [Xylella fastidiosa Ann-1] gi|182631932|gb|ACB92708.1| ribonuclease T [Xylella fastidiosa M23] Length = 210 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 62/183 (33%), Gaps = 13/183 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + ++EI + + + P G P++L++ G Sbjct: 23 VVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTDIDPKSLEVTG 82 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q A + HNA FD+ F+NA + R Sbjct: 83 IILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTAYK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + ++ + L + G+ + H A+ D+ + ++ + Sbjct: 143 RNPFHQFSVFDTVTLAGMAYGQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFCTITN 202 Query: 177 GGS 179 Sbjct: 203 IWP 205 >gi|307823995|ref|ZP_07654222.1| ribonuclease T [Methylobacter tundripaludum SV96] gi|307734779|gb|EFO05629.1| ribonuclease T [Methylobacter tundripaludum SV96] Length = 207 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 15/186 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V DIET G + K + ++EI AV + D T R + + P + ALK + Sbjct: 18 VVVDIETAGFNPKKNALLEIAAVIVELNSNSDLEITER-YTTHVIPFKNAELDEAALKFN 76 Query: 64 GITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 GI E N A + HN FD+GF+NA +QR Sbjct: 77 GIDPHHPFRMAIEEKDALHMLFKPIKEAVKRNNCTRAILVGHNPAFDIGFLNAAIQRTQI 136 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + L + + G+ + H AL D+ ++++ ++ Sbjct: 137 KRSPFHPFSTFDTATLGGLVYQQTVLAKIAQTAGLDWDNEKAHSALYDAEKTAELFCMIV 196 Query: 176 VGGSQI 181 Q+ Sbjct: 197 NRWKQL 202 >gi|170730478|ref|YP_001775911.1| ribonuclease T [Xylella fastidiosa M12] gi|167965271|gb|ACA12281.1| ribonuclease T [Xylella fastidiosa M12] Length = 210 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 62/183 (33%), Gaps = 13/183 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + ++EI + + + P G P++L++ G Sbjct: 23 VVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTDIDPKSLEVTG 82 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q A + HNA FD+ F+NA + R Sbjct: 83 IILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTAYK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + ++ + L + G+ + H A+ D+ + ++ + Sbjct: 143 RNPFHQFSVFDTVTLAGMAYGQTVLARAVQAAGLDWNATDAHSAVYDAEKTAHLFCTITN 202 Query: 177 GGS 179 Sbjct: 203 IWP 205 >gi|187251744|ref|YP_001876226.1| DNA polymerase III subunit epsilon [Elusimicrobium minutum Pei191] gi|186971904|gb|ACC98889.1| DNA polymerase III, epsilon subunit [Elusimicrobium minutum Pei191] Length = 201 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 10/175 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGI 65 + D ETTGL R+ EI + + + ++ + + P S E + +HGI Sbjct: 12 KFAFLDTETTGLSPYDGARLCEIAVIT--NGALIAKSEYGTIINP-RCVISQEVINIHGI 68 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+E P F I + + + HNA FD+ F+ AE R + I+D Sbjct: 69 TNEMAAQAPYFEDIAPLLIGLLTD--SVIVCHNADFDIPFLAAEFARCGLRMP-QTVILD 125 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 TL AR+ +N+L + G++ + H A+ D+ + V+ + Q Sbjct: 126 TLKFARKNGNFKKNNLGFIVSELGLS--NEGWHRAMADAKMTEKVFYHFLAAFKQ 178 >gi|332667991|ref|YP_004450779.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter hydrossis DSM 1100] gi|332336805|gb|AEE53906.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter hydrossis DSM 1100] Length = 180 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 6/179 (3%) Query: 7 MRKIVFDIETT---GLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALK 61 M I+FD+E T G +IEIGAV + Y + F + P S + Sbjct: 1 MNFIIFDLEATCWEGRPPSKVQEVIEIGAVLMNGYGEVEAEFSRMVRPILNPRLSAYCQE 60 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDF-FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L I + F + F D+ + D + + Q + + Sbjct: 61 LTNIKQTEVDRASIFPVVVESFQDWGLMLDEDYILCSWGGMDKKLLLQDCQLHDIEDEWV 120 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I+ R +H AL D+ L+ +++K + Sbjct: 121 DAHINIKHQYMELKRMRRPKGLRASVEAEGFDFTGPQHRALADAQNLAKIFLKYLDMWQ 179 >gi|325102919|ref|YP_004272573.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145] gi|324971767|gb|ADY50751.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145] Length = 1454 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 19/230 (8%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + D R I+I + + P+G + Sbjct: 2 YLIFDTETTGLPKRWDAPITDVDNWPRCIQIAWQLHDEMGNLIEHQDYLISPDGFDIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----- 113 A ++HGI+ + +++ + ++ + + N FD+ + AE R Sbjct: 62 AERIHGISTDLAREQGVPLLEILDKFNEALSKTKFVVGQNIGFDINIMGAEFHRYGVESA 121 Query: 114 ----NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + L + + + + Y + H A D + Sbjct: 122 LSKLPVLDTCTEITANLLQLPGGRGGRFKLPTLTELHEYLFNVPFAEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 +++++ + + F K ++ I L + Sbjct: 182 CFLELIKREVFTVEELQVDTTYFLKFQEYNAGIIQPLGLQHVNLKEASDA 231 >gi|312870744|ref|ZP_07730851.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF 3008A-a] gi|312873738|ref|ZP_07733783.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF 2052A-d] gi|329919615|ref|ZP_08276604.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners SPIN 1401G] gi|311090736|gb|EFQ49135.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF 2052A-d] gi|311093756|gb|EFQ52093.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF 3008A-a] gi|328937420|gb|EGG33842.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners SPIN 1401G] Length = 299 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 I N ++ D+ETTGLD N+ IIEIGA+++ + + Sbjct: 124 IDTNTKPYVIIDLETTGLDYINNNIIEIGAIKIAKNI---EEYSCIVK 168 >gi|220904848|ref|YP_002480160.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869147|gb|ACL49482.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 176 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 10/165 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET+G +G + D T F + P + ++HG+T Sbjct: 10 VAIDFETSG--YAAHSACAVGLARIEDGRVT-EQFYSLVRPPSSRV--LFTEIHGLTWPM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LK+ P F + F + +AHNA FD + A + + TL Sbjct: 65 LKNAPVF-GDVWPQMESFMKGAGVLLAHNASFDRRVLLACCREAGAGVP-EQHFLCTLKG 122 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ARR P LN +C+ +G H A D+ ++VY+ + Sbjct: 123 ARRSLPLPSKKLNHVCEHFG---IALEHHHAGSDAAACAEVYLHL 164 >gi|78777804|ref|YP_394119.1| DNA polymerase III subunit epsilon [Sulfurimonas denitrificans DSM 1251] gi|78498344|gb|ABB44884.1| Exonuclease [Sulfurimonas denitrificans DSM 1251] Length = 266 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 78/200 (39%), Gaps = 15/200 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIET G + +IIEI A+++ + R F+ + + +P ++ GI+ Sbjct: 73 IVDIETNGSKIEKHQIIEIAALKVKNGLVVER-FESLV--ECHEINPHITEITGISTNET 129 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D P+ + +F F + A +IAH+ KFD FI+ +Q+I PL Sbjct: 130 IDAPNLKKVMYDFRTFLGD--AVFIAHDVKFDYKFISLSMQKIGLPPLLNRS--LCSLSL 185 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 + S S + H A+ D +++ +++ E Sbjct: 186 AERTIESYRYALSYLNTIFNLHPEATHHRAMSDVITTYELF--------KLSLNSVDKEV 237 Query: 191 RFFKEEKKTVPNISLLKRDK 210 + ++ + LKR K Sbjct: 238 KTVEDLIRFSKEAKRLKRPK 257 >gi|294792957|ref|ZP_06758103.1| exonuclease [Veillonella sp. 6_1_27] gi|294455902|gb|EFG24266.1| exonuclease [Veillonella sp. 6_1_27] Length = 209 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 63/165 (38%), Gaps = 7/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + + + + + D T + + + P E +++HGI + Sbjct: 4 FVALDFET--ANKFKNSACSLAVITVKDGQITKKAY-SLIKPPFMSFDDECIEIHGIQPK 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +F +++ ++ + + +AHNAKFD+ + A L + Sbjct: 61 DVLHEKTFDQLWNAIYEN-HLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKL 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + LN++ G+ H AL D+ + V ++ Sbjct: 120 SRAVWPDLVNHKLNTMAAYIGVEF---KHHYALDDAETCAKVVLE 161 >gi|257870106|ref|ZP_05649759.1| exonuclease [Enterococcus gallinarum EG2] gi|257804270|gb|EEV33092.1| exonuclease [Enterococcus gallinarum EG2] Length = 180 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 67/169 (39%), Gaps = 7/169 (4%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M I D ET + + + V + D + + P + +++HG Sbjct: 2 KAMNFIAMDFET--ANYQKHSACSLALVMVRDSKIVGE-YYTLIQPET-DFFWKNIQIHG 57 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I E + + P F I+ + ++N + +AHNA FD G + L + + + Sbjct: 58 IHPEDVVNAPKFPDIWKQIQQYYNLNSLI-VAHNAGFDTGVLAGCLDYYGIEQPNYLSLC 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + + LN++C++ I + H AL DS + + ++ Sbjct: 117 TVRTSRKLYPEFENHKLNTVCQQLQIP--LLNHHDALEDSRACAQILLR 163 >gi|312875182|ref|ZP_07735195.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF 2053A-b] gi|311089289|gb|EFQ47720.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF 2053A-b] Length = 299 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 I N ++ D+ETTGLD N+ IIEIGA+++ + + Sbjct: 124 IDTNTKPYVIIDLETTGLDYINNNIIEIGAIKIAKNI---EEYSCIVK 168 >gi|83649371|ref|YP_437806.1| putative exonuclease [Hahella chejuensis KCTC 2396] gi|83637414|gb|ABC33381.1| putative exonuclease [Hahella chejuensis KCTC 2396] Length = 189 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 8/123 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGLD +IE+ +++ F + P EA +HGIT E Sbjct: 19 VVLDTETTGLD-DQAEVIEVSVMDMRGKVL----FDQLVRP-LNPVPDEAADIHGITSES 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L DKP+F ++ + + A+NA FD + ++ + Sbjct: 73 LADKPNFPDVYHSLKRVISGKTVV--AYNADFDSRLLMQTCAAYGLPVIEADWQCAMNAY 130 Query: 130 ARR 132 R Sbjct: 131 TRY 133 >gi|313206116|ref|YP_004045293.1| DNA polymerase iii, alpha subunit [Riemerella anatipestifer DSM 15868] gi|312445432|gb|ADQ81787.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer DSM 15868] gi|315022923|gb|EFT35946.1| DNA polymerase III alpha subunit [Riemerella anatipestifer RA-YM] gi|325336439|gb|ADZ12713.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer RA-GD] Length = 1550 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 71/225 (31%), Gaps = 22/225 (9%) Query: 9 KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL +D R+++I + + P G Sbjct: 2 YLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDEEGNLVENQDYIIKPEGYDIPFN 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A ++HGI+ + ++ E + ++ HN +FD + AE R + + + Sbjct: 62 ATRIHGISTKMAHEQGRDLVEILEEFKEVLKKTKIVAGHNIEFDYNIVGAEFYRKSIENV 121 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCK--------RYGITISHRSKHGALLDSHLLSDV 170 + N K H A D + + V Sbjct: 122 LEKIPSADTMALGTDYCQLGGGRNGKYKPPKLEELYEKLYGEKFDEAHNAAADVNATAQV 181 Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 + +MM G K +E++ ++ I R + R Sbjct: 182 FFEMMRVGIIPAETLKISEEQLKVYQENHPSPI----RPFAIVIR 222 >gi|221632413|ref|YP_002521634.1| putative DNA polymerase III, epsilon chain [Thermomicrobium roseum DSM 5159] gi|221156357|gb|ACM05484.1| putative DNA polymerase III, epsilon chain (EC ) [Thermomicrobium roseum DSM 5159] Length = 190 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 7/137 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTG+ S+ D++IE+ ++ + + P+ + Sbjct: 21 VILDTETTGIRSQ-DQVIELAVLDTHGNVL----LETLVKPSCPIDPAALRVHGLSEAHL 75 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++ + +NA FD I + D S Sbjct: 76 AHAPE--WPVVYRELRVIFDRARLIVTYNAPFDRRLIEQTCRCYGLSLPDLSWDCAMRRF 133 Query: 130 ARRKHPSSRNDLNSLCK 146 A P + + Sbjct: 134 AEYAGPPPTESWRNYHR 150 >gi|115452527|ref|NP_001049864.1| Os03g0301400 [Oryza sativa Japonica Group] gi|108707691|gb|ABF95486.1| exonuclease family protein, expressed [Oryza sativa Japonica Group] gi|113548335|dbj|BAF11778.1| Os03g0301400 [Oryza sativa Japonica Group] gi|215678888|dbj|BAG95325.1| unnamed protein product [Oryza sativa Japonica Group] Length = 313 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 3/84 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTG + +RIIE +L+ N T Q + P + + Sbjct: 115 VFDIETTGFSRRYERIIEFAVRDLMGGK--NSTIQTLINPEREIKNAYVHGISSSMVCKP 172 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW 94 D P F + + Sbjct: 173 -DIPRFREFIPLLLQYVLSRQMAD 195 >gi|70732717|ref|YP_262480.1| exonuclease [Pseudomonas fluorescens Pf-5] gi|68347016|gb|AAY94622.1| exonuclease [Pseudomonas fluorescens Pf-5] Length = 203 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 5/102 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V L R +Q + G + +L GI+ Sbjct: 3 RIAVIDFETTGISPSSSCRATEIAVVILEQGRIVER-YQSLMN-AGVRVPAFIEQLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 + L+ P + +E +F +AHNA FD F + Sbjct: 61 NAMLRSAPPAEQVMNEVNEFV--GITPLLAHNAAFDQKFWDF 100 >gi|330505789|ref|YP_004382658.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] gi|328920075|gb|AEB60906.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] Length = 235 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 5/142 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGLD I+ +G V + + + P + S E++ H IT Sbjct: 46 VALDVETTGLDPHQHAIVSLGLVPMDLQRIRCAEARYWVVKPTS-ELSAESVTFHHITHS 104 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P +S+ E + + + + + R++ IIDT+ Sbjct: 105 DIRHAPRLASVLDELLEALAGKVVVA---HYRKIERNFLDQALRLHLGEGLMFPIIDTME 161 Query: 129 IARRKHPSSRNDLNSLCKRYGI 150 + R HP + Sbjct: 162 LEARLHPRRSISWWDRLRGRQP 183 >gi|313144535|ref|ZP_07806728.1| DNA polymerase III [Helicobacter cinaedi CCUG 18818] gi|313129566|gb|EFR47183.1| DNA polymerase III [Helicobacter cinaedi CCUG 18818] Length = 254 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIET G ++ IIEIGA+ + + +F+ ++ +L GI E Sbjct: 73 FVFVDIETNGAKPQSSEIIEIGALRVKNSQIL-ESFESYV--YAPFVPENITELTGIRQE 129 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 +++ P + F +F ++AHN FD F++ L++ Sbjct: 130 DIQNAPQSKEVLRAFREFLGG--GVFVAHNVNFDFSFLDYHLRQN 172 >gi|224438091|ref|ZP_03659030.1| DNA polymerase III subunit epsilon [Helicobacter cinaedi CCUG 18818] Length = 233 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIET G ++ IIEIGA+ + + +F+ ++ +L GI E Sbjct: 52 FVFVDIETNGAKPQSSEIIEIGALRVKNSQIL-ESFESYV--YAPFVPENITELTGIRQE 108 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 +++ P + F +F ++AHN FD F++ L++ Sbjct: 109 DIQNAPQSKEVLRAFREFLGG--GVFVAHNVNFDFSFLDYHLRQN 151 >gi|282849129|ref|ZP_06258514.1| DNA polymerase III subunit epsilon domain protein [Veillonella parvula ATCC 17745] gi|282580833|gb|EFB86231.1| DNA polymerase III subunit epsilon domain protein [Veillonella parvula ATCC 17745] Length = 209 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 63/165 (38%), Gaps = 7/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + + + + + D T + + + P E +++HGI + Sbjct: 4 FVALDFET--ANKFKNSACSLAVITVKDGQITKKAY-SLIKPPFMSFDDECIEIHGIQPK 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +F +++ ++ + + +AHNAKFD+ + A L + Sbjct: 61 DVLHEKTFDQLWNAIYEN-HLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKL 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + LN++ G+ H AL D+ + V ++ Sbjct: 120 SRAVWPDLVNHKLNTMAAYIGVEF---KHHYALDDAETCAKVVLE 161 >gi|310640616|ref|YP_003945374.1| exonuclease rnase t and DNA polymerase iii [Paenibacillus polymyxa SC2] gi|309245566|gb|ADO55133.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus polymyxa SC2] Length = 223 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 83/239 (34%), Gaps = 28/239 (11%) Query: 7 MRKIVFDIE-TTGLDSK-NDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRK-NSPEAL 60 M+ I++D+E T +++ + II+IGAV+++ D TF F+ P+ R S + + Sbjct: 1 MQYIIYDLEFTVSRNARYSSEIIDIGAVKVIHGEDGLFVADTFHSFVRPSNRPVISTDTV 60 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + GIT + P F +F + + A ++ Sbjct: 61 QFTGITQRDIDAAPLFPEAVKQFIAWLGTDSTYYLCAWGPDDRQKLVSHCRTHHVDLGWI 120 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCK--RYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + I+R + + SL + +H AL D+ + V+ M Sbjct: 121 HNTNDIQKQISRLFSSNGKYRQLSLSQALELCNIEFDGQQHRALDDAVNTAQVF---MHH 177 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT--IQTLGKN 234 ++ +D R L +EE +++ + L K+ Sbjct: 178 FDRLTLVHNAADDEES--------------RGSKLVYSSPEEEQEQYSPFGNLANLFKD 222 >gi|291617286|ref|YP_003520028.1| Rnt [Pantoea ananatis LMG 20103] gi|291152316|gb|ADD76900.1| Rnt [Pantoea ananatis LMG 20103] gi|327393738|dbj|BAK11160.1| ribonuclease T Rnt [Pantoea ananatis AJ13355] Length = 223 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++E+ A+ ++ D ++T + P G PEAL G Sbjct: 20 VVIDVETAGFNAQTDALLEVAAITLKMDDEGWLHHDQTLHFHVEPFVGALLHPEALAFTG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A +AHNA FD+ F+NA +R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKLVRKGIKDTGCNRAIMVAHNATFDLNFMNAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L CK G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACKAAGMEFDSSQAHSALYDTQQTATLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|262190277|ref|ZP_06048547.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93] gi|262033843|gb|EEY52313.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93] Length = 233 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 52/184 (28%), Gaps = 16/184 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57 + D ETTGL+++ D I+ IG V ++ + P +G +S Sbjct: 45 VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEEESIVFHGITHSE 104 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + I + I+ N + + Sbjct: 105 LQHAQAPEQVLKELLEALHGKIVVVHFRHIERDFLRQISLNIWGEAIEFPVLDTLEIERQ 164 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L + I RR PS R R + S H AL D+ ++++ Sbjct: 165 LLDKQRSLWQRITRRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 220 Query: 178 GSQI 181 Sbjct: 221 HLPP 224 >gi|164688494|ref|ZP_02212522.1| hypothetical protein CLOBAR_02139 [Clostridium bartlettii DSM 16795] gi|164602907|gb|EDQ96372.1| hypothetical protein CLOBAR_02139 [Clostridium bartlettii DSM 16795] Length = 252 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 21/234 (8%) Query: 7 MRKIVFDIETTGLDSKNDR--------------IIEIGAVELLDYSKTNRTFQVFLCPN- 51 M I+FD+E + DR II+IGA++L TF ++ Sbjct: 1 MNYIIFDLE---FNQGFDRLNNKTVSNAKCPFEIIQIGAIKLDSELNILDTFSSYIKSEI 57 Query: 52 GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH--NAKFDVGFINAE 109 + P K+ GIT+ LK+ PSF ++ +F F +N+ + N ++ Sbjct: 58 YKDIHPFVKKMTGITNSNLKNAPSFKEVYEDFLKFIGIKNSIFGTWGTNDLKELHRNILF 117 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ I + +P + + H AL D++ + Sbjct: 118 YNLSLENVPTMYINIQQHASKFFNNPVGKCIGLQNAISILQLEQDKQYHNALNDAYYTAL 177 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR-ITKEELD 222 V+ K+ + + ++++ + +L K + R ++KE+ Sbjct: 178 VFQKINNKNIKAETYTYNLSKKEKQKQRLKIDYDNLFAEFKTILKRELSKEDKK 231 >gi|269965971|ref|ZP_06180063.1| ribonuclease T [Vibrio alginolyticus 40B] gi|269829367|gb|EEZ83609.1| ribonuclease T [Vibrio alginolyticus 40B] Length = 214 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 14/195 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV ++ ++ T + P G EAL+ +G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLKMDEHGVLHPASTIHFHVEPFEGANLEKEALEFNG 79 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + + A +AHNA FD+GF+NA +R Sbjct: 80 IRDPFSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLGFVNAANERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCGIV 199 Query: 176 VGGSQINFGFKTNED 190 + +E+ Sbjct: 200 NKWKALGGWPLVDEE 214 >gi|313893912|ref|ZP_07827478.1| putative DNA polymerase III, epsilon subunit [Veillonella sp. oral taxon 158 str. F0412] gi|313441476|gb|EFR59902.1| putative DNA polymerase III, epsilon subunit [Veillonella sp. oral taxon 158 str. F0412] Length = 209 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 63/165 (38%), Gaps = 7/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + + + + + D T + + + P E +++HGI + Sbjct: 4 FVALDFET--ANKFKNSACSLAVITVKDGQITKKAY-SLIKPPFMSFDDECIEIHGIQPK 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +F +++ ++ + + +AHNAKFD+ + A L + Sbjct: 61 DVLHEKTFDQLWNAIYEN-HLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKL 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + LN++ G+ H AL D+ + + ++ Sbjct: 120 SRAVWPDLVNHKLNTMAAYMGVEF---KHHYALDDAETCAKIVLE 161 >gi|317050855|ref|YP_004111971.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] gi|316945939|gb|ADU65415.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] Length = 250 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 1/54 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLH 63 D ETTG D K I+ IG V + + + P + S + Sbjct: 62 ALDFETTGFDPKRHGIVSIGLVPMSLQRIRCAEARHWIVKPRVQLESQSIVVHG 115 >gi|317492115|ref|ZP_07950545.1| ribonuclease T [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919820|gb|EFV41149.1| ribonuclease T [Enterobacteriaceae bacterium 9_2_54FAA] Length = 218 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 70/199 (35%), Gaps = 13/199 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D+ + ++EI AV L + + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFDANTNALLEIAAVTLRMTDDGWLEPDETLHFHVEPFVGSVLVPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I E + + + + A +AHNA FD F+ A +R+ Sbjct: 80 IDPENPLRGAVSEYEALHAIFKAVRKGIKEHDCNRAVIVAHNAHFDHSFVMAAAERVGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C I H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACIAANIPFDSTQAHSALYDTEQTATLFCELVN 199 Query: 177 GGSQINFGFKTNEDRFFKE 195 ++ E Sbjct: 200 RWKRMGGWPLPANAEESAE 218 >gi|269102191|ref|ZP_06154888.1| ribonuclease T [Photobacterium damselae subsp. damselae CIP 102761] gi|268162089|gb|EEZ40585.1| ribonuclease T [Photobacterium damselae subsp. damselae CIP 102761] Length = 221 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 75/202 (37%), Gaps = 14/202 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV ++ D T + P G EAL+ +G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLKMDDDGWLHPATTLHFHVTPFEGAILHKEALEFNG 79 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD F+ A +R Sbjct: 80 IRDPFSPLRGAVSEDTALKEIFKQIRKEQKNADCSRAIMVAHNANFDHSFVMAAAERAKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + A + L C+ I ++ H AL D+ ++++ K++ Sbjct: 140 KRNPFHPFATFDTAALSGLALGQTVLAKACQTANIPFDNKEAHSALYDTERTAELFCKIV 199 Query: 176 VGGSQINFGFKTNEDRFFKEEK 197 + +++ + Sbjct: 200 NKWKALGGWPLVDDETEENQND 221 >gi|215405762|ref|ZP_03417943.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 02_1987] gi|215413638|ref|ZP_03422306.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 94_M4241A] gi|215448050|ref|ZP_03434802.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85] gi|289747550|ref|ZP_06506928.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 02_1987] gi|289759871|ref|ZP_06519249.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85] gi|294995379|ref|ZP_06801070.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 210] gi|298527188|ref|ZP_07014597.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis 94_M4241A] gi|289688078|gb|EFD55566.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 02_1987] gi|289715435|gb|EFD79447.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85] gi|298496982|gb|EFI32276.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis 94_M4241A] gi|326905550|gb|EGE52483.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis W-148] Length = 329 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 71/201 (35%), Gaps = 7/201 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D+P F+ I E D +AHN FD F+ AE + + + Sbjct: 75 DDQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R + L +L +G+ H A D +L+ + + +++ + Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDVRVLTGILAAALESARELDVWLPVHPV 190 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 + V + L Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211 >gi|260061966|ref|YP_003195046.1| DNA polymerase III subunit epsilon [Robiginitalea biformata HTCC2501] gi|88783528|gb|EAR14699.1| DNA polymerase III, epsilon subunit [Robiginitalea biformata HTCC2501] Length = 456 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 2/91 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG +RI EI + ++ + P G + L GIT + Sbjct: 4 VVDIETTGNGIYGNRITEIALFNIDQGR-IADSYSTLVNP-GCEIPAFITGLTGITTAMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 ++ P FS I + F + + + N + Sbjct: 62 RNAPDFSEIAPKIDAFSSGRVFVAHSVNFDY 92 >gi|215432688|ref|ZP_03430607.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis EAS054] Length = 347 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 7/201 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D+P F+ I E D +AHN FD F+ AE + + + Sbjct: 75 DDQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R + L +L +G+ H A D+ +L+ + + +++ + Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDARVLTGILAAALESARELDVWLPVHPV 190 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 + V + L Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211 >gi|167999243|ref|XP_001752327.1| predicted protein [Physcomitrella patens subsp. patens] gi|162696722|gb|EDQ83060.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1960 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 91/236 (38%), Gaps = 19/236 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDE 68 IVFDIETTG +I+E+ ++ + T + + P + A+ Sbjct: 252 IVFDIETTGFLKPGSKIVELACRDIAGGDCS--TLETLVNPYQPVPIASTAVHKITSEMV 309 Query: 69 FLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSR 122 D PS++ + + F DF + +AHN +FDV FI E + + Sbjct: 310 NRDDIPSWTEVMTAFVDFVESRRIGNSDVILVAHNGRRFDVPFIMKECYECSMEIPSHWY 369 Query: 123 IIDTLSIARRKHPSSR-----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDT+ +A+ +L L H A +D +L+ V+ K+++ Sbjct: 370 FIDTIDLAKAMLKKRFGKTKLYNLQFLYYDCYKLPRLEDAHRAGVDVDMLASVFGKLLM- 428 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE--ELDEHDKTIQTL 231 ++ D+ FK + LL+ + +T ++KE E + + Sbjct: 429 --ELEMPVSELLDQAFKASHIELKPDLLLRENNDRYTSLSKEVDETLLEQSMVDVI 482 >gi|76363558|sp|P0C0B7|DPO3_STRPY RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|9789541|gb|AAF98345.1| DNA polymerase III alpha chain [Streptococcus pyogenes] Length = 1465 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 6/168 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + N+ +I+I A ++ + F F+ P G S +L GITD+ L+ Sbjct: 431 DVETTGLSAMNNDLIQIAASKMFKGNIV-EQFDEFIDP-GHPLSAFTTELTGITDKHLQG 488 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 ++ F DF + + +AHNA FDVGF+NA +R + + I Sbjct: 489 AKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEFARNL 546 Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L L KR+ +++ H H A D+ + + + Sbjct: 547 YPEYKRHGLGPLTKRFQVSLDH--HHMANYDAEATGRLLFIFLKDARE 592 >gi|219559793|ref|ZP_03538869.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T17] gi|289571955|ref|ZP_06452182.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T17] gi|289545709|gb|EFD49357.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T17] Length = 284 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 7/201 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D+P F+ I E D +AHN FD F+ AE + + + Sbjct: 75 DDQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R + L +L +G+ H A D+ +L+ + + +++ + Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDARVLTGILAAALESARELDVWLPVHPV 190 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 + V + L Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211 >gi|188582299|ref|YP_001925744.1| DNA polymerase III subunit epsilon [Methylobacterium populi BJ001] gi|179345797|gb|ACB81209.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi BJ001] Length = 298 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 68/238 (28%), Gaps = 33/238 (13%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK-----TNRTFQVFLCPNGRKNSPEALKLHGIT 66 D+ETTGLD + D IIE+ +FQ P S Sbjct: 47 VDVETTGLDPQRDEIIELAMTPFNYGLDGTVFSVGDSFQGLRQP-----SEPITPEITAI 101 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + I F + IAHNA FD F+ + P Sbjct: 102 TGITNEMVAGQVIDPAEVAKFAAPASLVIAHNAAFDRRFLERFSDVFSTKPW-------A 154 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI------------KM 174 S+++ + + L +H A+ D ++ ++ Sbjct: 155 CSLSQIDWAAEGFEGAKLAYLAQAAGFFYDRHRAMHDCLATVELLAMRLPRSGVTGLSRL 214 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP----NISLLKRDKPLFTRITKEELDEHDKTI 228 + G + + F ++ N + + + + + + + + + Sbjct: 215 LDGARTVAWRIWAENSPFDLKDVLKARGYRWNGDPGPQPRAWYIDVPEAQREAELRFL 272 >gi|311694884|gb|ADP97757.1| exonuclease RNase T and DNA polymerase III [marine bacterium HP15] Length = 190 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 53/169 (31%), Gaps = 10/169 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTGL + D I+EI + + + P+ N A +HGIT Sbjct: 20 VIIDTETTGL-TDTDEIVEISVINCHGTTL----LDTLIRPSSEINPA-AQAVHGITLAE 73 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 D P+F + + + + + +A + L P + T + Sbjct: 74 TADAPTFDQVLPDLLRVIQGKTVVMYNSSYDARLIQQSAMKRGCRAPTLYPHCAMKTYAK 133 Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + R + H AL D V M Sbjct: 134 FYGQWDDYRESWKWQSLDKAARQCGVTVDGNAHRALTDCFTTLGVIKAM 182 >gi|289755840|ref|ZP_06515218.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon [Mycobacterium tuberculosis EAS054] gi|289696427|gb|EFD63856.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon [Mycobacterium tuberculosis EAS054] Length = 330 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 7/201 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D+P F+ I E D +AHN FD F+ AE + + + Sbjct: 75 DDQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R + L +L +G+ H A D+ +L+ + + +++ + Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDARVLTGILAAALESARELDVWLPVHPV 190 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 + V + L Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211 >gi|262393711|ref|YP_003285565.1| ribonuclease T [Vibrio sp. Ex25] gi|262337305|gb|ACY51100.1| ribonuclease T [Vibrio sp. Ex25] Length = 214 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 77/195 (39%), Gaps = 14/195 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L D T + P G EAL+ +G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLKMDEDGVLHPASTIHFHVEPFEGANLEKEALEFNG 79 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D + + + + + A +AHNA FD+GF+NA +R Sbjct: 80 IRDPYSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLGFVNAANERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCGIV 199 Query: 176 VGGSQINFGFKTNED 190 + +E+ Sbjct: 200 NKWKALGGWPLVDEE 214 >gi|260198755|ref|ZP_05766246.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T46] gi|289441146|ref|ZP_06430890.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T46] gi|289414065|gb|EFD11305.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T46] Length = 319 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 7/201 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D+P F+ I E D +AHN FD F+ AE + + + Sbjct: 75 DDQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R + L +L +G+ H A D+ +L+ + + +++ + Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDARVLTGILAAALESARELDVWLPVHPV 190 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 + V + L Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211 >gi|254558840|ref|YP_003065935.1| hypothetical protein METDI0201 [Methylobacterium extorquens DM4] gi|254266118|emb|CAX21870.1| hypothetical protein, putative exonuclease domain [Methylobacterium extorquens DM4] Length = 297 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 72/211 (34%), Gaps = 8/211 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ET + + D +G + R + P + SP +++HGI Sbjct: 1 MKVVAIDFET--ANERRDSACAVGLAWIEGGRVVRRE-SRLIRPPQLRFSPGNIRVHGIL 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D P+F + +EF + +AHNA FD+G + A L + D + Sbjct: 58 PADVRDAPTFPEVIAEFLPDLSG--GLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 R + + L K G H A D+ +++ + + + Sbjct: 116 QIARRVFPDPAGHGL---AKVAGRLGIRFEHHDAGEDAFACAEIALAALRETGAADIADL 172 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 T P + + R + Sbjct: 173 ARGLGLTPIRALTTPRRDMTRSTSAKALRAS 203 >gi|269797470|ref|YP_003311370.1| exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM 2008] gi|269094099|gb|ACZ24090.1| Exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM 2008] Length = 209 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 63/165 (38%), Gaps = 7/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + + + + + D T + + + P E +++HGI + Sbjct: 4 FVALDFET--ANKFKNSACSLAVITVKDGQITKKAY-SLIKPPFMSFDDECIEIHGIQPK 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +F +++ ++ + + +AHNAKFD+ + A L + Sbjct: 61 DVLHEKTFDQLWNAIYEN-HLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKL 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + LN++ G+ H AL D+ + V ++ Sbjct: 120 SRAVWPDLVNHKLNTMAAYIGVEF---KHHYALDDAETCAKVVLE 161 >gi|215424954|ref|ZP_03422873.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T92] gi|289748229|ref|ZP_06507607.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T92] gi|289688816|gb|EFD56245.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T92] Length = 329 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 7/201 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D+P F+ I E D +AHN FD F+ AE + + + Sbjct: 75 DDQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R + L +L +G+ H A D+ +L+ + + +++ + Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDARVLTGILAAALESARELDVWLPVHPV 190 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 + V + L Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211 >gi|31794883|ref|NP_857376.1| DNA polymerase III subunit epsilon [Mycobacterium bovis AF2122/97] gi|121639627|ref|YP_979851.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224992123|ref|YP_002646812.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str. Tokyo 172] gi|260184632|ref|ZP_05762106.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis CPHL_A] gi|289445310|ref|ZP_06435054.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis CPHL_A] gi|31620481|emb|CAD95924.1| PUTATIVE DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ [Mycobacterium bovis AF2122/97] gi|121495275|emb|CAL73761.1| Putative dna polymerase III (epsilon subunit) dnaQ [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224775238|dbj|BAH28044.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str. Tokyo 172] gi|289418268|gb|EFD15469.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis CPHL_A] Length = 329 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 7/201 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D+P F+ I E D +AHN FD F+ AE + + + Sbjct: 75 DDQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R + L +L +G+ H A D+ +L+ + + +++ + Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDARVLTGILAAALESARELDVWLPVHPV 190 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 + V + L Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211 >gi|187932792|ref|YP_001886212.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str. Eklund 17B] gi|187720945|gb|ACD22166.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str. Eklund 17B] Length = 309 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 8/178 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + P + P + +HGI Sbjct: 1 MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIIEEV-HHLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D+ F ++ + +FN+ IAHNA FD+ + L+ N + I Sbjct: 58 PRMVQDELEFDKVWEKIKHYFNK--NLVIAHNASFDISVLRNTLELYNLEMPSFQYICTM 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 LN++ G H AL D+ S++ + + + + Sbjct: 116 KLSRNFYSNLDNARLNTVNNFLG---YEFKHHDALADAMACSNILLNICEELNTRDIN 170 >gi|83647725|ref|YP_436160.1| putative exonuclease [Hahella chejuensis KCTC 2396] gi|83635768|gb|ABC31735.1| putative exonuclease [Hahella chejuensis KCTC 2396] Length = 230 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 69/178 (38%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D+ETTGL+ K D +I IGAVE+ D S ++F++ + + S L Sbjct: 35 RWVAADVETTGLNIKKDVVIAIGAVEINDLSICLEQSFELLIDADTHLESDNILIHGLSQ 94 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRII 124 + +I S A +A +A FD + E + L + Sbjct: 95 QTLSQGAHPKEAIHSFLS---YAHGAALLAFHAPFDKAMLEKEARTHLGVSSRLPFYDVA 151 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + L + PS L+ +G+ + +H A D+ +++ + + + Sbjct: 152 EWLKALCPEAPSHLRSLDDWSHYFGL--YNDQRHHAACDAMAAAELALICLQKARSLG 207 >gi|322806628|emb|CBZ04197.1| putative DNA polymerase III epsilon chain [Clostridium botulinum H04402 065] Length = 253 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 69/207 (33%), Gaps = 15/207 (7%) Query: 7 MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNS 56 M I+FD+E + + II+IGA++L + T TF + P + Sbjct: 1 MNYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSDLN 57 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAELQRIN 114 P L +T + L SF ++ +F F N+ + ++ + Sbjct: 58 PFVKNLTNLTMDSLNKAKSFREVYKDFLKFLNKDRNIFCIWGMTDMKELFRNIVYYEFHT 117 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + + +P S N S + H A D+ ++V+ K+ Sbjct: 118 ESMPKEYINVQAYTGKYLNYPKSINVGLSNAVELFHITKNNDFHNAFNDAFYTAEVFKKI 177 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP 201 + TN ++ + Sbjct: 178 YSEKIKTKIYKPTNNSTTYRTKNTKTK 204 >gi|308067866|ref|YP_003869471.1| Inhibitor of the KinA pathway to sporulation, exonuclease [Paenibacillus polymyxa E681] gi|305857145|gb|ADM68933.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Paenibacillus polymyxa E681] Length = 230 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 82/240 (34%), Gaps = 30/240 (12%) Query: 7 MRKIVFDIE-TTGLDSK-NDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKN-SPEAL 60 M+ I++D+E T +++ + II+IGAV++ D TF F+ P+ R S + + Sbjct: 8 MQYIIYDLEFTVSRNARYSSEIIDIGAVKVVQGDDGLYVADTFHSFVRPSNRPVLSTDTV 67 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + GIT + P F +F + ++ + D R + L Sbjct: 68 QFTGITQRDIDAAPLFPEAVKQFVTWLGT-DSPYYLCAWGPDDRQKLVSHCRTHHVDLGW 126 Query: 121 SRIIDTLSIARRK----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + + R S +H AL D+ + V+ M Sbjct: 127 IHNTNDIQKQISRLLSSNGKYRQLSLSQALELCNIDFDGQQHRALDDAVNTAQVF---MY 183 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT--IQTLGKN 234 +I +D R L +EE +++ + L K+ Sbjct: 184 HFDRITLVHNAADDEES--------------RGSKLVYSSPEEEQEQYSPFGNLANLFKD 229 >gi|229521403|ref|ZP_04410822.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80] gi|229341501|gb|EEO06504.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80] Length = 233 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 52/184 (28%), Gaps = 16/184 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57 + D ETTGL+++ D I+ IG V N+ + P +G +S Sbjct: 45 VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQARYWLVKPSQPLEDESIVFHGITHSE 104 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + I + I+ N + + Sbjct: 105 LQHAQAPEQVLKELLEALHGKIVVVHFRHIERDFLRQISLNIWGEAIEFPVLDTLEIERQ 164 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L + I RR PS R R + S H AL D+ ++++ Sbjct: 165 LLDKQRSLWQRITRRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 220 Query: 178 GSQI 181 Sbjct: 221 HLPP 224 >gi|312884148|ref|ZP_07743860.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC BAA-2122] gi|309368196|gb|EFP95736.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC BAA-2122] Length = 239 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 9 KIVF---DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 ++VF D ETTGLDS +D II IG V +D N+ + P ++ E++ +HG Sbjct: 46 QVVFLAMDFETTGLDSNDDDIITIGTVPFTIDRIMINKAKHWTVKP-RKQLPEESVVIHG 104 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEW 94 IT + D P S ++ E + + Sbjct: 105 ITHSDILDAPDLSGVYREVLEQMAGKVMVV 134 >gi|269213464|ref|ZP_05982022.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria cinerea ATCC 14685] gi|269146173|gb|EEZ72591.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria cinerea ATCC 14685] Length = 470 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVSGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + IAHN++FD F+ + S + + Sbjct: 85 DGMVADAPVFAEIAGELFSVLKG--CVLIAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192 >gi|284040095|ref|YP_003390025.1| DNA polymerase III subunit epsilon [Spirosoma linguale DSM 74] gi|283819388|gb|ADB41226.1| DNA polymerase III, epsilon subunit [Spirosoma linguale DSM 74] Length = 180 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 7/172 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG R+ EI D + +F L P G P L GI+DE Sbjct: 2 YCIVDVETTGGVKGPTRLTEIAIFR-HDGQQVVDSFHSLLNP-GCPIPPFIRHLTGISDE 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P+F+ + ++ + Q+A ++AHN FD FI EL + D L + + Sbjct: 60 MVQDAPTFADVANDVLN--ITQDAIFVAHNVGFDFSFIQKELNWLGHDFLRRTLCT-VRT 116 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + L LC+ I +H A D+ ++ ++ +Q Sbjct: 117 SRKLLPGYPSYSLGKLCRSL--EIPLNGRHRAQGDAAATVLLFEMLLKNDAQ 166 >gi|312881846|ref|ZP_07741617.1| ribonuclease T [Vibrio caribbenthicus ATCC BAA-2122] gi|309370492|gb|EFP97973.1| ribonuclease T [Vibrio caribbenthicus ATCC BAA-2122] Length = 215 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++ D ++EI A+ L T + P G EAL+ +G Sbjct: 20 VVIDVETAGFNADTDALLEICAITLTMDEFGNLIPASTLHFHVEPFEGANIEKEALEFNG 79 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + + A +AHNA FD F+ A +R Sbjct: 80 IRDPFSPLRGAVTEAEALKEIYKLVRKEQKAADCNRAIIVAHNATFDHNFVMAASERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ ++ H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKTAGMEFDNKEAHSALYDTQKTAELFCGIV 199 Query: 176 VGGSQIN 182 + Sbjct: 200 NKWKSLG 206 >gi|237731384|ref|ZP_04561865.1| ribonuclease T [Citrobacter sp. 30_2] gi|226906923|gb|EEH92841.1| ribonuclease T [Citrobacter sp. 30_2] Length = 215 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A +AHNA FD F+ A +R + Sbjct: 80 IDPNNPLRGAVSEYDALHAIFKMVRKGIKDSGCNRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLSLGQTVLSKACLAAGMEFDGNQAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|269838290|ref|YP_003320518.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter thermophilus DSM 20745] gi|269787553|gb|ACZ39696.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter thermophilus DSM 20745] Length = 335 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 53/176 (30%), Gaps = 16/176 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL I++I V+ + P EA ++HGIT++ Sbjct: 25 VYLDTETTGLGPD-AEIVDIAVVDQAGRVL----LNSLVQP-RNPIPAEATRVHGITNKM 78 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT--- 126 + + P + + I +NA +D I+ +R Sbjct: 79 VMNAPE-WPEVYQELARIIQDYPTLIIYNAAYDRRLISQTCRRYGISVPRADWQCAMLNY 137 Query: 127 ----LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 R + L G + H AL D+ V + M Sbjct: 138 AAYRGEWNARYGNHRWHTLEKAAIETGAPM--PPTHRALDDAQACRHVVLSMAGVA 191 >gi|156974590|ref|YP_001445497.1| hypothetical protein VIBHAR_02308 [Vibrio harveyi ATCC BAA-1116] gi|156526184|gb|ABU71270.1| hypothetical protein VIBHAR_02308 [Vibrio harveyi ATCC BAA-1116] Length = 217 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 59/189 (31%), Gaps = 21/189 (11%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + + I+ D ETTGL S IIE A+ + P EA Sbjct: 11 MKKLSTENAIIIDTETTGLGSDT-EIIEFTAICADSGKVIVNE---LVKPTC-SIPAEAT 65 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI----------------AHNAKFDVG 104 +HGITDE +KD P F +FS ++ I NA + Sbjct: 66 AIHGITDEDVKDAPDFHLVFSNYFLPLLNGRPIIIYNSDFDTRLIIQSLDKHCNAAYVQS 125 Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 + + + L + C + + +S + H AL D Sbjct: 126 VHDLFFKFCVPQCAMLWYAEFFGVLNEHHEDYKWQSLTNACAQQQVDVSDLTAHRALADC 185 Query: 165 HLLSDVYIK 173 + + Sbjct: 186 EMTRRLIHA 194 >gi|314934059|ref|ZP_07841422.1| exonuclease [Staphylococcus caprae C87] gi|313653170|gb|EFS16929.1| exonuclease [Staphylococcus caprae C87] Length = 184 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 66/173 (38%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V++++ T +F + P + + +HGI E Sbjct: 6 FVALDFET--ANGKRTSICSVGMVKVINNQIT-ESFYTLVNPFD-YFTETNINVHGIRPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D PSF ++ F NE +AHNA FD+ ++ L+ +N + + Sbjct: 62 DVEDAPSFEYVYPYMLQFINE--LPVVAHNAAFDMNVLHQSLKSLNIETPSMTYFCSYQL 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + H AL D+ + + +++ + Sbjct: 120 AKRTIDAYRYGL---KHLMNHYQLDFHGHHDALNDAKACAMITFRLLKHYDDL 169 >gi|222149472|ref|YP_002550429.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4] gi|221736455|gb|ACM37418.1| polymerase epsilon subunit [Agrobacterium vitis S4] Length = 326 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVF 47 I+ D ETTGL+ + D IIEIG + +V+ Sbjct: 74 IILDTETTGLNWRKDEIIEIGLIAFTFDSNGNIGDVTEVY 113 >gi|153938164|ref|YP_001389626.1| DNA polymerase III subunit epsilon [Clostridium botulinum F str. Langeland] gi|152934060|gb|ABS39558.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum F str. Langeland] gi|295317718|gb|ADF98095.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum F str. 230613] Length = 309 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 65/212 (30%), Gaps = 11/212 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D+ F I+ + +F N IAHNA FD+ + + L+ N I Sbjct: 58 PHMVQDELEFDKIWGKIKGYF--NNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTM 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG------SQ 180 LN++ G H + + K + Sbjct: 116 KLSKNFYSNIDNARLNTVNNFLGYKFKHHDALADAMACSNILINISKELNSKDINEISKL 175 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 I + +K + R P Sbjct: 176 IGVTLGYVNENGYKPSSTKGRILKRSNRQAPK 207 >gi|89094681|ref|ZP_01167617.1| ribonuclease T [Oceanospirillum sp. MED92] gi|89081027|gb|EAR60263.1| ribonuclease T [Oceanospirillum sp. MED92] Length = 209 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 71/199 (35%), Gaps = 13/199 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S+ D ++EI AV L + +++F+ + P G AL G Sbjct: 11 VVVDVETAGFNSRTDALLEIAAVTLTMDENGFLMIDQSFEAQVEPFEGANLEQSALDFTG 70 Query: 65 ITDEFLKD--------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A + HNA FD GF+NA R + Sbjct: 71 IDPYDPDREAVPERDAMEEIFKPVRKAIKAHGCKRAVLVGHNASFDQGFVNAAANRADIK 130 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI + H AL D+ ++++ ++ Sbjct: 131 RNPFHPFSTFDTATLGGLAFGQTVLARACQVAGIEFDGKQAHSALYDTMKTAELFCLIVN 190 Query: 177 GGSQINFGFKTNEDRFFKE 195 ++ + +E Sbjct: 191 RWKELGGWEMAESFQDDEE 209 >gi|86144205|ref|ZP_01062541.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Leeuwenhoekiella blandensis MED217] gi|85829335|gb|EAQ47801.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Leeuwenhoekiella blandensis MED217] Length = 458 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 7/195 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + + E+ + + ++ F + P R + L GI + Sbjct: 2 YAILDLETTGGKYNEEGVTEVAIYKFDGHKVVDQ-FISLVNPE-RPIQAFVVGLTGINNA 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ P F + + Q+ +AHNA+FD + E R+ D S L+ Sbjct: 60 MLRNAPKFYEVAKRIIE--ITQDCIIVAHNAQFDYRILQLEFDRLGYDYQRKSLCTVELA 117 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + + I +H A D+ ++ ++ S+ + Sbjct: 118 QELLPGQESYSL---GKLVRNLGIPITDRHRANGDALATVKLFKLLLAKDSKKTIIQEAV 174 Query: 189 EDRFFKEEKKTVPNI 203 + K+ + +I Sbjct: 175 KLNPRKQIDTKLRDI 189 >gi|330799210|ref|XP_003287640.1| hypothetical protein DICPUDRAFT_151766 [Dictyostelium purpureum] gi|325082367|gb|EGC35851.1| hypothetical protein DICPUDRAFT_151766 [Dictyostelium purpureum] Length = 557 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 7/198 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D ETTGL D I EI ++L D F + P +S A + Sbjct: 286 DTETTGLSVATDEITEISIIDLYD----GSHFYKLINPTTTVSSASASIHGHTNKSLAGN 341 Query: 73 KPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + E+ + + A IAHN KFD G + +++ + I + Sbjct: 342 EYWCDIEPSLIEYLSKYQKSGAYIIAHNEKFDRGILASQIGKNAASVPSMFPSIVFVDSI 401 Query: 131 RRKHPSSRNDL-NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + + D+ + + ++ + + Sbjct: 402 PIFKRFVKKLEGGYSMSSLIDHYQIPKSDKSHSSCQDVLDLVLLLKEHKNKEGKNIEADL 461 Query: 190 DRFFKEEKKTVPNISLLK 207 +F + K + N LK Sbjct: 462 AKFLNDTIKEIKNKHNLK 479 >gi|120608729|ref|YP_968407.1| DNA-directed DNA polymerase [Acidovorax citrulli AAC00-1] gi|120587193|gb|ABM30633.1| DNA-directed DNA polymerase [Acidovorax citrulli AAC00-1] Length = 221 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 5/100 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R E+ V + + +R FQ + G P ++L GIT Sbjct: 4 RIAVIDFETTGMTPSQGARATEVAIVLMEEGRPVDR-FQSLMR-TGAWLPPFIIQLTGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 L P S+ E F + AHNA FD F Sbjct: 62 PAMLDTAPPAESVMREAARFVGDAPMV--AHNASFDSRFW 99 >gi|255745686|ref|ZP_05419634.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101] gi|255736761|gb|EET92158.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101] Length = 233 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 53/176 (30%), Gaps = 16/176 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57 + D ETTGL+++ D I+ IG V ++ + P +G +S Sbjct: 45 VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEDESIVFHGITHSE 104 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + I + I+ N + + Sbjct: 105 LQHAQAPEQVLKELLEALHGKIVVVHFRHIERDFLRQISLNIWGEAIEFPVLDTLEIERQ 164 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L + IARR PS R R + S H AL D+ ++++ Sbjct: 165 LLDKQRSLWQRIARRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQA 216 >gi|56460528|ref|YP_155809.1| DNA polymerase III subunit epsilon [Idiomarina loihiensis L2TR] gi|56179538|gb|AAV82260.1| 3'-5' exonuclease/DnaQ family enzyme [Idiomarina loihiensis L2TR] Length = 248 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60 I K M + D ETTGLD + I+ I A+ + + + + P R + E++ Sbjct: 53 INKTPM--VAVDFETTGLDPEQHGIVSIAAIPMTTERILFSEAKSWVVKP-RRSLTDESV 109 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW 94 +HGIT ++ P SI E + + Sbjct: 110 VIHGITHSEIEHAPDLESIIDELLELVAGKVWVV 143 >gi|77361037|ref|YP_340612.1| ribonuclease T [Pseudoalteromonas haloplanktis TAC125] gi|76875948|emb|CAI87170.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Pseudoalteromonas haloplanktis TAC125] Length = 232 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 72/213 (33%), Gaps = 17/213 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIG--AVELLDYSK--TNRTFQVFLCP-----------NGRK 54 +V D+ET G + D ++EI +++ D + T + P Sbjct: 19 VVIDVETGGFNKDTDALLEIAVSVLKMDDEGLLSIDHTVHFHVEPFADANIEQAAIEFNG 78 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P + + + + Q + +AHNA FD GF+NA ++R N Sbjct: 79 IDPFSALRGAV--PEEHAIKEICKVVRKAQKAAGCQRSVVVAHNAAFDHGFLNAAIERNN 136 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + + + L C+ GI + H AL D+ +++Y + Sbjct: 137 IKRTPFHPFVSFDTTSLAGLALGQTVLAKACRAAGIEFDNSQAHSALYDTERTAELYCLI 196 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207 + Q+ + E + + K Sbjct: 197 VNRWQQLGGWPLAPLENTDTELQVDDIDSDDAK 229 >gi|209695329|ref|YP_002263258.1| ribonuclease T [Aliivibrio salmonicida LFI1238] gi|208009281|emb|CAQ79547.1| ribonuclease T [Aliivibrio salmonicida LFI1238] Length = 221 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 45/202 (22%), Positives = 72/202 (35%), Gaps = 14/202 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +SK D ++EI AV L Y K T + P G EAL G Sbjct: 20 VVIDVETAGFNSKTDALLEICAVTLAMDDEGYLKPATTIHFHVTPFEGANLEQEALDFIG 79 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + + + A +AHNA FD F+ +R Sbjct: 80 IRDPFSPLRGAVTEDVALKEIFKLIRKEQKQHDCRRAIMVAHNANFDHSFVMEAAERTKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + A + L CK G+ + H AL D+ ++++ ++ Sbjct: 140 KRIPFHPFCTFDTAAISGLALGQTVLAKACKTAGMDFDGKEAHSALYDTEKTAELFCHIV 199 Query: 176 VGGSQINFGFKTNEDRFFKEEK 197 + E K Sbjct: 200 NKWKDLGGWPLAPEPENDTNNK 221 >gi|294795062|ref|ZP_06760197.1| exonuclease [Veillonella sp. 3_1_44] gi|294454424|gb|EFG22798.1| exonuclease [Veillonella sp. 3_1_44] Length = 209 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 63/165 (38%), Gaps = 7/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + + + + + D T + + + P E +++HGI + Sbjct: 4 FVALDFET--ANKFKNSACSLAVITVKDGQITKKAY-SLIKPPFMSFDDECIEIHGIQPK 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +F +++ ++ + + +AHNAKFD+ + A L + Sbjct: 61 DVLHEKTFDELWNAIYEN-HLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKL 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + LN++ G+ H AL D+ + V ++ Sbjct: 120 SRAVWPDLVNHKLNTMAAYIGVEF---KHHYALDDAETCAKVVLE 161 >gi|223044042|ref|ZP_03614082.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus capitis SK14] gi|222442585|gb|EEE48690.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus capitis SK14] Length = 184 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 66/173 (38%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V++++ T +F + P + + +HGI E Sbjct: 6 FVALDFET--ANGKRTSICSVGMVKVINNQIT-ESFYTLVNPFD-YFTETNINVHGIRPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D PSF ++ F NE +AHNA FD+ ++ L+ +N + + Sbjct: 62 NVEDAPSFEYVYPYMLKFINE--LPVVAHNAAFDMNVLHQSLKSLNIETPSMTYFCSYQL 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + H AL D+ + + +++ + Sbjct: 120 AKRTIDAYRYGL---KHLMNHYQLDFHGHHDALNDAKACAMITFRLLKHYDDL 169 >gi|28199095|ref|NP_779409.1| ribonuclease T [Xylella fastidiosa Temecula1] gi|32129969|sp|Q87C86|RNT_XYLFT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|28057193|gb|AAO29058.1| ribonuclease T [Xylella fastidiosa Temecula1] Length = 211 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 62/183 (33%), Gaps = 13/183 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + ++EI + + + P G P++L++ G Sbjct: 24 VVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTDIDPKSLEVTG 83 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q A + HNA FD+ F+NA + R Sbjct: 84 IILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTAYK 143 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + ++ + L + G+ + H A+ D+ + ++ + Sbjct: 144 RNPFHQFSVFDTVTLAGMAYGQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFCTITN 203 Query: 177 GGS 179 Sbjct: 204 IWP 206 >gi|283833269|ref|ZP_06353010.1| ribonuclease T [Citrobacter youngae ATCC 29220] gi|291070906|gb|EFE09015.1| ribonuclease T [Citrobacter youngae ATCC 29220] Length = 215 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A +AHNA FD F+ A +R + Sbjct: 80 IDPNNPLRGAVSEYDALHAIFKMVRKGIKESGCNRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLSLGQTVLSKACLAAGMEFDGNQAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|305667231|ref|YP_003863518.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170] gi|88708165|gb|EAR00403.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170] Length = 454 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 4/114 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I EI + + ++ F + P + P + L GI ++ L Sbjct: 4 ILDIETTGGKYNEEGITEIAIHKFDGHQVVDK-FISLVNPE-KDIQPFVVNLTGINNKML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + P F + + +++ +AHNA+FD + E +R+ + + Sbjct: 62 RTAPKFHEVAKRIVE--ITEDSVLVAHNAQFDYRILRTEFRRLGYNFERKTLCT 113 >gi|309807670|ref|ZP_07701611.1| putative CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LactinV 01V1-a] gi|308169103|gb|EFO71180.1| putative CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LactinV 01V1-a] Length = 275 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 I N ++ D+ETTGLD N+ IIEIGA+++ + + Sbjct: 102 IDTNTKPYVIIDLETTGLDYINNNIIEIGAIKIAKNI---EEYSCIVK 146 >gi|304383875|ref|ZP_07366332.1| exonuclease [Prevotella marshii DSM 16973] gi|304334953|gb|EFM01226.1| exonuclease [Prevotella marshii DSM 16973] Length = 163 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 67/170 (39%), Gaps = 8/170 (4%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+ D ET +++ + +G V + + TF + P S +++HG+ Sbjct: 1 MKDFAAIDFET--ANNERSSVCSVGLVIVRNG-AVADTFYSLIQPEPNYYSYWCVRVHGL 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T P FS ++ + +AHN++FD + A + D D S Sbjct: 58 THADTDAAPVFSEVWKQIEPLIEG--LPLVAHNSRFDESCLRAVFRVYQMDYPDYSFFDT 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + R S + L+++ G ++ H AL D+ + + K++ Sbjct: 116 LTAARRTFPHLSNHQLHTVATECG--YDLKNHHHALADAEACAWIARKIL 163 >gi|290962326|ref|YP_003493508.1| DNA polymerase III subunit epsilon [Streptomyces scabiei 87.22] gi|260651852|emb|CBG74981.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7) [Streptomyces scabiei 87.22] Length = 613 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 74/202 (36%), Gaps = 9/202 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ET+GL DR++ + + L ++T F L P P + +HG+T + L Sbjct: 22 VDVETSGLRPGRDRVLSLSILTLDAQGNQTGE-FSTLLNP---DCDPGPVHVHGLTADRL 77 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P+F I + + +AHNA+FD F+ E ++ R+ Sbjct: 78 AGAPAFEEIAPQVGALLSS--RVLVAHNAQFDYDFLAHEFAQVRSWAPVSRRLCTLALNR 135 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 + L +L YG+ H A D +LS + + Q+ Sbjct: 136 LVGPATPDLKLGTLAAHYGVRQEKA--HDAQDDVRVLSGILRGSLSAAEQLGLALPVLGC 193 Query: 191 RFFKEEKKTVPNISLLKRDKPL 212 ++ + VP R+ Sbjct: 194 PPRQDYRPYVPKTPCAYRNPGR 215 >gi|254233206|ref|ZP_04926532.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis C] gi|124602999|gb|EAY61274.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis C] Length = 329 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 7/201 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +P F+ I E D +AHN FD F+ AE + + + Sbjct: 75 DGQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R + L +L +G+ H A D +L+ + + +++ + Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDVRVLTGILAAALESARELDVWLPVHPV 190 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 + V + L Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211 >gi|15843331|ref|NP_338368.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis CDC1551] gi|148824916|ref|YP_001289670.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis F11] gi|218755494|ref|ZP_03534290.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis GM 1503] gi|254366256|ref|ZP_04982300.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis str. Haarlem] gi|254552821|ref|ZP_05143268.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289763891|ref|ZP_06523269.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis GM 1503] gi|306778600|ref|ZP_07416937.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu002] gi|306786623|ref|ZP_07424945.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu003] gi|306790989|ref|ZP_07429311.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu004] gi|306791307|ref|ZP_07429609.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu005] gi|306795373|ref|ZP_07433675.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu006] gi|306801344|ref|ZP_07438012.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu008] gi|306805555|ref|ZP_07442223.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu007] gi|306969951|ref|ZP_07482612.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu009] gi|13883693|gb|AAK48182.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis CDC1551] gi|134151768|gb|EBA43813.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis str. Haarlem] gi|148723443|gb|ABR08068.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis F11] gi|289711397|gb|EFD75413.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis GM 1503] gi|308328330|gb|EFP17181.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu002] gi|308328734|gb|EFP17585.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu003] gi|308332576|gb|EFP21427.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu004] gi|308340068|gb|EFP28919.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu005] gi|308344057|gb|EFP32908.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu006] gi|308347855|gb|EFP36706.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu007] gi|308351843|gb|EFP40694.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu008] gi|308352508|gb|EFP41359.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu009] gi|323717575|gb|EGB26777.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis CDC1551A] Length = 329 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 7/201 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +P F+ I E D +AHN FD F+ AE + + + Sbjct: 75 DGQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R + L +L +G+ H A D +L+ + + +++ + Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDVRVLTGILAAALESARELDVWLPVHPV 190 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 + V + L Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211 >gi|322691183|ref|YP_004220753.1| hypothetical protein BLLJ_0994 [Bifidobacterium longum subsp. longum JCM 1217] gi|320456039|dbj|BAJ66661.1| hypothetical protein BLLJ_0994 [Bifidobacterium longum subsp. longum JCM 1217] Length = 185 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 1/70 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D ETTGLD + D I+EIG + D + F + G+ + Sbjct: 16 VDTETTGLDPRKDPILEIGMIATGPDLKPVDDGFHTTVHWEGKPSEFIQGMHGPNGLLAE 75 Query: 71 KDKPSFSSIF 80 PS +F Sbjct: 76 CAHPSAPHMF 85 >gi|226949657|ref|YP_002804748.1| exonuclease family protein [Clostridium botulinum A2 str. Kyoto] gi|226843422|gb|ACO86088.1| exonuclease family protein [Clostridium botulinum A2 str. Kyoto] Length = 253 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 70/207 (33%), Gaps = 15/207 (7%) Query: 7 MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-S 56 M I+FD+E + + II+IGA++L + T TF + P N + Sbjct: 1 MNYIIFDLE---FNQGYNNKIEIKCPFEIIQIGAIKLNENFTTIDTFNALIKPEIYSNLN 57 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAELQRIN 114 P L +T + L F ++ +F +F N+ + ++ + Sbjct: 58 PFVKNLTNLTMDSLNKANPFREVYKDFLEFLNKNRNIFCIWGMTDMKELFRNIVYYELDT 117 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + + +P S N S + H A D+ ++V+ K+ Sbjct: 118 ESMPKEYINVQAYTGKYLNYPKSINVGLSNAVELFHITKNNDFHNAFNDAFYTAEVFKKI 177 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP 201 + TN ++ + Sbjct: 178 YSEKIKTKIYKPTNNSTTYRNKNTKTR 204 >gi|149190247|ref|ZP_01868521.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1] gi|148835854|gb|EDL52817.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1] Length = 144 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 5/96 (5%) Query: 145 CKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204 K Y I S R HGALLD+ +L+DVY+ M Q + F + + +T+ ++ Sbjct: 51 AKHYTIDTSARVLHGALLDAEILADVYLAMTG--GQTSMQFNAGQSDGDESGGETIKRLT 108 Query: 205 LLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWD 238 R + +E++ H+ + + K + +W Sbjct: 109 -TGRKSLKILHASADEIEAHNSRLDIVEKGGSCLWR 143 >gi|78485464|ref|YP_391389.1| DNA polymerase III subunit epsilon [Thiomicrospira crunogena XCL-2] gi|78363750|gb|ABB41715.1| Exonuclease [Thiomicrospira crunogena XCL-2] Length = 207 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 5/177 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQ-VFLCPNGRKNSPEALKLHGITD 67 + FD ETTGL+ + DRI+ + A+++ + T+ F+ S E++K+H I + Sbjct: 32 VCFDCETTGLNPRKDRIVSLSAIKIRGNEVLTSEALNLTFV--QEAAISEESIKIHWIRN 89 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRIIDT 126 E K S F F + + I I Sbjct: 90 EDTKAGLSEQEGIEAFLHFIGSRPLVGYYLEFDVAMVNQIIKPWLGITLPNAQIEVSSRY 149 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 P DL + + + +H A D+ + S +YIK+ + Sbjct: 150 YDYKEEIIPKKIIDLTFDAILKDLELPNLGQHDAFSDAFMTSLIYIKLKSLENYQGL 206 >gi|229826629|ref|ZP_04452698.1| hypothetical protein GCWU000182_02005 [Abiotrophia defectiva ATCC 49176] gi|229789499|gb|EEP25613.1| hypothetical protein GCWU000182_02005 [Abiotrophia defectiva ATCC 49176] Length = 313 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 71/220 (32%), Gaps = 10/220 (4%) Query: 7 MRKIVFDIE-TTGLDSKND-------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 MR IVFD+E G SK + IIEIGAV+L ++ K +F + P + Sbjct: 1 MRYIVFDLEWNQGYPSKEESEKSLPFEIIEIGAVKLDEHFKIIDSFHRIIKPVVYPELFK 60 Query: 59 ALKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 K +T++ L F + EF + + + + + Sbjct: 61 YTKELIPLTEKDLSKGTDFVTACKEFLKWCRKGDRNYSFATWGTLDLLELQRNMAFFEVY 120 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKMMV 176 SR + ++ + ++ + A + ++ +++ Sbjct: 121 NCFSRPLYYYNVQYLFNIFMEKYDETVFSLENAIKYLELDEDKAFHSAISDAEYTAEILR 180 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 S IN + D + K + K TR Sbjct: 181 HISDINIRLYPSVDTYKFPLNKNQEVSIIYPDHKLSITRA 220 >gi|332307350|ref|YP_004435201.1| ribonuclease T [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174679|gb|AEE23933.1| ribonuclease T [Glaciecola agarilytica 4H-3-7+YE-5] Length = 211 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 74/184 (40%), Gaps = 13/184 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELL-DYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G +++ D ++E+ A+ ++ D T ++TF + P G AL+ +G Sbjct: 18 VIVDVETAGFNAQTDALLEVAAITTKMDADGYLTPDKTFHYHVVPFEGANLEKAALEFNG 77 Query: 65 ITDE--------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q + +AHNA FD+GFINA ++R Sbjct: 78 IDPWCALRGALDETEVMKDLCKQIRKEQKDADCQRSVMVAHNAAFDLGFINAAIERSKIK 137 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L C+ I+ H AL D+ +++Y ++ Sbjct: 138 RTPFHPFVSFDTTTLAGLALGQTVLVKACQAANISFDQSEAHSALYDTQKTAELYCYIVN 197 Query: 177 GGSQ 180 Sbjct: 198 KWHS 201 >gi|148549845|ref|YP_001269947.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1] gi|148513903|gb|ABQ80763.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1] Length = 211 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 7/174 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R E+ V L R +Q + G L GIT Sbjct: 3 RIAVIDFETTGISPGTGCRATEVAVVMLEGGRIVER-YQSLMN-AGVPVPAFVAGLTGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ P + +E +F +AHNA FD F + EL RI + + Sbjct: 61 TAMLRSAPPVDKVMNEVAEFVGG--TPLLAHNAAFDQKFWDYELSRIGRS--RSQPFACS 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L ++RR P++ N R+ + H A+ D+ + +++ + Q Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMADAEMAANLLQHLAGVLRQ 170 >gi|74316107|ref|YP_313847.1| exonuclease [Thiobacillus denitrificans ATCC 25259] gi|74055602|gb|AAZ96042.1| Exonuclease [Thiobacillus denitrificans ATCC 25259] Length = 233 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 21/32 (65%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39 R +V D+ET+GLD + DR+I IGAV + Sbjct: 41 RCVVVDVETSGLDPRRDRLIAIGAVAVSRGKV 72 >gi|332523978|ref|ZP_08400230.1| exonuclease DnaQ family/helicase DinG family [Streptococcus porcinus str. Jelinkova 176] gi|332315242|gb|EGJ28227.1| exonuclease DnaQ family/helicase DinG family [Streptococcus porcinus str. Jelinkova 176] Length = 820 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 7/104 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 + + + V D+E T ++ +D RII+IG V + D +FQ + P+ + S Sbjct: 1 MTEKLTKYAVIDLEAT--NAGSDARIIQIGIVIVEDKKII-NSFQTDINPHSK-LSEHIK 56 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 L GITD+ L P FS + E ++ + ++AHN KFD Sbjct: 57 SLTGITDQQLATAPEFSQVAGEIFELIKD--CVFVAHNVKFDAN 98 >gi|210622633|ref|ZP_03293293.1| hypothetical protein CLOHIR_01241 [Clostridium hiranonis DSM 13275] gi|210154134|gb|EEA85140.1| hypothetical protein CLOHIR_01241 [Clostridium hiranonis DSM 13275] Length = 273 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 76/235 (32%), Gaps = 18/235 (7%) Query: 6 KMRKIVFDIE-TTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPN-GR 53 M IVFD+E G + K + II++GAV+L F F+ P Sbjct: 4 MMEYIVFDLEFNQGFNKKTNKTFSDNACPFEIIQLGAVKLDSNFNIIAAFDTFIKPCLYT 63 Query: 54 KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQ 111 P K+ GI E L++ P+F F +F +F + + ++ Sbjct: 64 SMHPYVAKITGICMEDLENAPTFKEAFKKFTEFVASDDPIFCVWGKSDLRELYRNIKYHN 123 Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + + H ++++ + H AL D++ + V+ Sbjct: 124 LPDLSLPKSYIDVQYYASDFINHTTAQSIGLENAVIALNLEDTVAYHNALNDAYYTAKVF 183 Query: 172 IKMMVGGSQINF----GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222 + + N + + V K L ++K+E Sbjct: 184 ASINPKAIKPNIYIYTNLSDSSSFGLDPLDEDVFLKECDDFSKVLNRNLSKDEKK 238 >gi|313500723|gb|ADR62089.1| DNA polymerase III, epsilon subunit [Pseudomonas putida BIRD-1] Length = 203 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 7/174 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R E+ V L R +Q + G L GIT Sbjct: 3 RIAVIDFETTGISPGTGCRATEVAVVMLEGGRIVER-YQSLMN-AGVPVPAFVAGLTGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ P + +E +F +AHNA FD F + EL RI + + Sbjct: 61 TAMLRSAPPVEKVMNEVAEFVGG--TPLLAHNAAFDQKFWDYELSRIGRS--RSQPFACS 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L ++RR P++ N R+ + H A+ D+ + +++ + Q Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMADAEMAANLLQHLAGVLRQ 170 >gi|325678237|ref|ZP_08157866.1| exonuclease [Ruminococcus albus 8] gi|324110129|gb|EGC04316.1| exonuclease [Ruminococcus albus 8] Length = 651 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 56/179 (31%), Gaps = 15/179 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDE 68 I+ D ETTGL D +++ V +++ F + PN H + Sbjct: 206 IILDTETTGLSPSYDELLQ---VSIINGK--GEVLFDSYFKPNAASWDEAQAVNHISPEM 260 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + ++ + + +N FD+ F+ + D ++ + Sbjct: 261 VKNSPR--LNEKAYEISQILDKAHKIVGYNVDFDLDFLWLNGAGGSNDNFKKVDVMQMFA 318 Query: 129 IAR-----RKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYIKMMVGGSQ 180 + L YG ++ H +L D + VY ++ + Sbjct: 319 PIYGEINEKYGGYKWQKLTKAADYYGYDWDSHAESAHNSLGDCYATLHVYKSVLSDLKK 377 >gi|83591972|ref|YP_425724.1| DNA polymerase III subunit epsilon [Rhodospirillum rubrum ATCC 11170] gi|83574886|gb|ABC21437.1| Exonuclease [Rhodospirillum rubrum ATCC 11170] Length = 209 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Query: 9 KIV-FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50 ++V D ETTGLD ND II + AV + + T++ + + P Sbjct: 30 EVVSVDCETTGLDRHNDDIITLAAVRVRGNRVLTSQKLDLVVKP 73 >gi|325271798|ref|ZP_08138267.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51] gi|324103069|gb|EGC00447.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51] Length = 201 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 7/174 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R E+ V L R +Q + G L GIT Sbjct: 3 RIAVIDFETTGISPGAGCRATEVAVVMLEGGRIVER-YQSLMN-AGVPVPAFVAGLTGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ P + +E +F E +AHNA FD F + EL RI + + Sbjct: 61 TAMLRSAPPVDKVMNEVAEFVGE--TPLLAHNAAFDQKFWDYELARIGRS--RSQSFACS 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L ++RR P++ N R+ + H A+ D+ + +++ + + Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLPDTGNAHRAMADAEMAANLMQHLAGVLRE 170 >gi|120437353|ref|YP_863039.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803] gi|117579503|emb|CAL67972.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803] Length = 1461 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 72/230 (31%), Gaps = 19/230 (8%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + R I+I + + P+G + Sbjct: 2 YLIFDTETTGLPKNWNAPLTDSDNWPRCIQIAWQVHDEMGNLIENQDYLVQPDGFDIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + ++HGI+ + K++ E ++ +++ + N FD+ + AE R + + Sbjct: 62 SERIHGISTDLAKEQGVPLDEVLEKFNIALQKSKFVVGQNVGFDLNIMGAEFIRRDFENS 121 Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + + + H A D + Sbjct: 122 LQEMPVLDTCTEVTANLCKIPGGRGGKFKLPTLTELHEFLFEEAFGEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 +++++ D F + I L+ + +++ Sbjct: 182 CFLELIRQRIYTIEELDVPVDYFENFSEANPKRIQLIGLKHINLKKASEK 231 >gi|329964271|ref|ZP_08301372.1| exonuclease [Bacteroides fluxus YIT 12057] gi|328525576|gb|EGF52619.1| exonuclease [Bacteroides fluxus YIT 12057] Length = 168 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 8/168 (4%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR D ET + + + +G V + + T ++ + P + ++HG+ Sbjct: 1 MRNFAAIDFET--ANEQRCSVCSVGVVIVKEGEIT-DSYYSLIRPEPEYYTYWTTRVHGL 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII- 124 T P F ++ E +AHN FD + A + + D D Sbjct: 58 TLADTAGAPVFPDVWREIAPRIEG--LPLVAHNKAFDESCLKAVFRTYSMDYPDYDFYCT 115 Query: 125 -DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + P + + C Y + H + A + + V+ Sbjct: 116 LQASRRVIKGLPDYQLHTVAACCGYKLERHHNALADAEACAWIAKAVF 163 >gi|254226650|ref|ZP_04920229.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V51] gi|125620819|gb|EAZ49174.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V51] Length = 236 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 52/184 (28%), Gaps = 16/184 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57 + D ETTGL+++ D I+ IG V ++ + P +G +S Sbjct: 48 VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEEESIVFHGITHSE 107 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + I + I+ N + + Sbjct: 108 LQHAQAPEQVLKELLEALHGKIVVVHFRHIERDFLRQISLNIWGEAIEFPVLDTLEIERQ 167 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L + I R+ PS R R + S H AL D+ ++++ Sbjct: 168 LLDKQRSLWQRITRQPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 223 Query: 178 GSQI 181 Sbjct: 224 HLPP 227 >gi|261253571|ref|ZP_05946144.1| ribonuclease T [Vibrio orientalis CIP 102891] gi|260936962|gb|EEX92951.1| ribonuclease T [Vibrio orientalis CIP 102891] Length = 218 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 72/199 (36%), Gaps = 14/199 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L T + P G EAL+ +G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLKMDENGDLAPASTIHFHVEPFEGANLEKEALEFNG 79 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + + A +AHNA FD F+ +R Sbjct: 80 IRDPFSPLRGAVTEAEALKEIYKLVRKEQKAADCSRAIMVAHNATFDHSFVMEASERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + A + L CK G+ ++ H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTAALSGLAYGQTVLAKACKTAGMDFDNKEAHSALYDTQKTAELFCGIV 199 Query: 176 VGGSQINFGFKTNEDRFFK 194 + D K Sbjct: 200 NKWKALGGWPVVEPDTDKK 218 >gi|192289550|ref|YP_001990155.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris TIE-1] gi|192283299|gb|ACE99679.1| Exonuclease RNase T and DNA polymerase III [Rhodopseudomonas palustris TIE-1] Length = 276 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 54/187 (28%), Gaps = 17/187 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNR-TFQVFLCPNGRKNSPEALKLHG 64 I+ DIETTGLD D IIE+G V+ R TF F E + G Sbjct: 23 IMLDIETTGLDHSTDEIIELGMVKFDYSAEGRILGVRGTFSAF-NEPSVPIPREITAITG 81 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITD + F + IAHN+ FD F Sbjct: 82 ITDGMVAG----HGFDVHAVAAFVDDAVIVIAHNSGFDRKFAERYWPVFEHRAW------ 131 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 S+ + L H A+ D H L ++ + Sbjct: 132 -ACSVTEVDWGAHGFADAQLGYLLNGAGFFHQAHRAVDDCHALLEILDFTLPTTGAPALA 190 Query: 185 FKTNEDR 191 + R Sbjct: 191 LLLDNAR 197 >gi|262159037|ref|ZP_06030149.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1] gi|262169396|ref|ZP_06037088.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27] gi|262022209|gb|EEY40918.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27] gi|262029222|gb|EEY47874.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1] Length = 233 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 53/184 (28%), Gaps = 16/184 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57 + D ETTGL+++ D I+ IG V ++ + P +G +S Sbjct: 45 VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEDESIVFHGITHSE 104 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + I + I+ N + + Sbjct: 105 LQHAQAPEQVLKELLEALHGKIVVVHFRHIERDFLRQISLNIWGEAIEFPVLDTLEIERQ 164 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L + IARR PS R R + S H AL D+ ++++ Sbjct: 165 LLDKQRSLWQRIARRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 220 Query: 178 GSQI 181 Sbjct: 221 HLPP 224 >gi|227892520|ref|ZP_04010325.1| possible DNA-directed DNA polymerase III epsilon subunit [Lactobacillus ultunensis DSM 16047] gi|227865641|gb|EEJ73062.1| possible DNA-directed DNA polymerase III epsilon subunit [Lactobacillus ultunensis DSM 16047] Length = 370 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 8/213 (3%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + II+ G + + +T+ + P+ R+ + L GI + Sbjct: 10 FAVVDLETTGTQRENGHHIIQFGCAIIKNLKVV-KTYSFMINPH-REIPQSVVNLTGIHN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIID 125 E + + F + QNA ++AHN FD+ F+N EL + D L ++ Sbjct: 68 EDVAKEKDFKFYAPKIVKIL--QNAVFVAHNVDFDLPFLNYELTQHGYDALTNKAIDTVE 125 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 IA PS + + H++ A + LL + IK + Q Sbjct: 126 LAKIAFPTLPSYKLSDLTSQLEIKHLNPHKADSDAYGTAILLIKI-IKQLEKLPQATLNT 184 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 ++ + V K ++ Sbjct: 185 LSSLSHGLIRDTSWVITTIADNLRKEKRPLGSE 217 >gi|238020074|ref|ZP_04600500.1| hypothetical protein VEIDISOL_01954 [Veillonella dispar ATCC 17748] gi|237863598|gb|EEP64888.1| hypothetical protein VEIDISOL_01954 [Veillonella dispar ATCC 17748] Length = 209 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 62/165 (37%), Gaps = 7/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + + + + + D + + + P E +++HGI + Sbjct: 4 FVALDFET--ANKFKNSACSLAVITVKDGQIIKKAY-SLIKPPFMSFDDECIEIHGIQPK 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +F +++ ++ + + +AHNAKFD+ + A L D Sbjct: 61 DVIHEKTFDQLWNAIYEN-HLKGNIMVAHNAKFDMNVLRATLDYYKIPWPDLDYACTVKL 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + LN++ G+ H AL D+ + V ++ Sbjct: 120 SRAVWPDLVNHKLNTMAAYIGVEF---KHHYALDDAETCAKVVLE 161 >gi|212639167|ref|YP_002315687.1| hypothetical protein Aflv_1334 [Anoxybacillus flavithermus WK1] gi|212560647|gb|ACJ33702.1| 3'-5' exonuclease related protein [Anoxybacillus flavithermus WK1] Length = 240 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 67/177 (37%), Gaps = 8/177 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 I+ D ETTG + D I + A++ + + P R+ + L GIT+ Sbjct: 58 FILLDTETTGFSPQRGDEIFSLAALKTKNGEPL-DLYCSNFRPK-RRIPEHVVTLTGITN 115 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P F ++ + ++ + DV F+N L R + L + I Sbjct: 116 DDVAYAPLLEEEIHHILSFL--NHSILLGYHIQHDVAFLNEFLSRNYRTVLQQTTIEMRK 173 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + H S ++L ++ +H A D L +++ ++ + Q+ Sbjct: 174 IMECIYHESFPTLDDAL---SFYHLTPIDRHTAKGDVMSLFEMWKRVFIELQQLQID 227 >gi|109897723|ref|YP_660978.1| ribonuclease T [Pseudoalteromonas atlantica T6c] gi|109700004|gb|ABG39924.1| RNAse T [Pseudoalteromonas atlantica T6c] Length = 211 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 13/184 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL---DYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G +++ D ++E+ A+ D T ++TF + P G AL+ +G Sbjct: 18 VIVDVETAGFNAQTDALLEVAAITTQMDADGFLTPDKTFHYHVVPFEGANLEKAALEFNG 77 Query: 65 ITDE--------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q + +AHNA FD+GFINA ++R Sbjct: 78 IDPWCALRGALDETEVMKDLCKQIRKEQKDADCQRSVMVAHNAAFDLGFINAAIERSKIK 137 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L C+ I+ H AL D+ +++Y ++ Sbjct: 138 RTPFHPFVSFDTTTLSGLALGQTVLVKACQAANISFDQSEAHSALYDTQKTAELYCYIVN 197 Query: 177 GGSQ 180 Sbjct: 198 KWQS 201 >gi|325970703|ref|YP_004246894.1| exonuclease RNase T and DNA polymerase III [Spirochaeta sp. Buddy] gi|324025941|gb|ADY12700.1| Exonuclease RNase T and DNA polymerase III [Spirochaeta sp. Buddy] Length = 197 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 56/179 (31%), Gaps = 7/179 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + + T+ + P P +H + Sbjct: 1 MNYVAIDFETANGYPGGA--CSVALARFDEEGMLLDTYYSLIHPKHPYFDPSMTAVHQLK 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE P F I+ + DF + +AHNA FD+G + + + + + + Sbjct: 59 DEECLAAPEFDVIWPQMRDFIGK--DLLVAHNAVFDMGVLKGCFEVYDLEARQMTYLCTL 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L+ L YG H AL D+ + + K+ G Sbjct: 117 TIARKVWPKMLSYKLSYLVDYYG---MEYQAHYALDDAIMCGKMMHKLCYGHLYEMLDL 172 >gi|269214643|ref|ZP_05986966.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria lactamica ATCC 23970] gi|269209302|gb|EEZ75757.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria lactamica ATCC 23970] Length = 470 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + +L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAELTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + IAHN++FD F+ + S + + Sbjct: 85 DGMVADAPVFAEIAGELFSVLKG--CVLIAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192 >gi|114319997|ref|YP_741680.1| DNA polymerase III subunit epsilon [Alkalilimnicola ehrlichii MLHE-1] gi|114226391|gb|ABI56190.1| Exonuclease, RNase T and DNA polymerase III [Alkalilimnicola ehrlichii MLHE-1] Length = 240 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + D+ETTGLD I+ IG V + L P S Sbjct: 51 VALDMETTGLDPDRHAIVSIGLVPFDLQRIRLPDRRHWLLQPPRPLLSESITLHG 105 >gi|15641303|ref|NP_230935.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586529|ref|ZP_01676315.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae 2740-80] gi|121728837|ref|ZP_01681848.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52] gi|147673833|ref|YP_001216855.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395] gi|153801317|ref|ZP_01955903.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae MZO-3] gi|153819755|ref|ZP_01972422.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC 8457] gi|153823215|ref|ZP_01975882.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33] gi|227081461|ref|YP_002810012.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2] gi|229505123|ref|ZP_04394633.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286] gi|229511206|ref|ZP_04400685.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33] gi|229518325|ref|ZP_04407769.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9] gi|229608142|ref|YP_002878790.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236] gi|254848414|ref|ZP_05237764.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10] gi|298498618|ref|ZP_07008425.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757] gi|9655777|gb|AAF94449.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549208|gb|EAX59240.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae 2740-80] gi|121628884|gb|EAX61341.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52] gi|124123142|gb|EAY41885.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae MZO-3] gi|126509702|gb|EAZ72296.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC 8457] gi|126519275|gb|EAZ76498.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33] gi|146315716|gb|ABQ20255.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395] gi|227009349|gb|ACP05561.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2] gi|227013207|gb|ACP09417.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395] gi|229345040|gb|EEO10014.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9] gi|229351171|gb|EEO16112.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33] gi|229357346|gb|EEO22263.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286] gi|229370797|gb|ACQ61220.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236] gi|254844119|gb|EET22533.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10] gi|297542951|gb|EFH79001.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757] Length = 236 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 53/184 (28%), Gaps = 16/184 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57 + D ETTGL+++ D I+ IG V ++ + P +G +S Sbjct: 48 VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEDESIVFHGITHSE 107 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + I + I+ N + + Sbjct: 108 LQHAQAPEQVLKELLEALHGKIVVVHFRHIERDFLRQISLNIWGEAIEFPVLDTLEIERQ 167 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L + IARR PS R R + S H AL D+ ++++ Sbjct: 168 LLDKQRSLWQRIARRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 223 Query: 178 GSQI 181 Sbjct: 224 HLPP 227 >gi|302541826|ref|ZP_07294168.1| putative DNA polymerase III epsilon subunit [Streptomyces hygroscopicus ATCC 53653] gi|302459444|gb|EFL22537.1| putative DNA polymerase III epsilon subunit [Streptomyces himastatinicus ATCC 53653] Length = 239 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 2/84 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG D + RI+ VE+ R + P +A+ +HGIT+E Sbjct: 11 FDLETTGTDPRTARIVTAAVVEVRGGEPIGRH-EWLAAPE-VPIPDDAVAVHGITNERAA 68 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWI 95 + E D Sbjct: 69 AGRPIREVADEIADVLVAHWRAGA 92 >gi|209696236|ref|YP_002264166.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238] gi|208010189|emb|CAQ80516.1| putative exonuclease [Aliivibrio salmonicida LFI1238] Length = 210 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 1/166 (0%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETT LD + ++ I A+++ + T++T + L P S + Sbjct: 31 VSIDCETTSLDPNHAELVSIAAIKIKQNRVLTSQTIHLKLRPPHNLTSESVKIHQLRHHD 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +I N + H K + Sbjct: 91 LSHGLSEKDAIIQLLQFIGNRPIVGYHIHYDKKILDRSCLRHCGHPFPNRLIEVCHIYHH 150 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P++ DL+ + + +H AL D+ + +Y+++ Sbjct: 151 KLECLLPNAYYDLSIEAISTHLDLPQAERHDALQDAIAAALIYVRL 196 >gi|88859048|ref|ZP_01133689.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas tunicata D2] gi|88819274|gb|EAR29088.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas tunicata D2] Length = 210 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 9/175 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + +V D+E TGLD K D I+ + + + R+ F+ + + Sbjct: 27 KYLVIDLELTGLDPKVDEIVSLAWLPIEEQRIIVGRSEH-FINCEVNELKQSPIFHGIDR 85 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSR 122 P ++ + + HNA+ D F+ A Q N + + Sbjct: 86 FAVKGGVPLRQALLELQP---LLDDHVLVFHNAELDWAFLKAAFQNANLLLSSSVMLDTM 142 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 I+ + + H + +DLN R + H AL D+ +++++ + Sbjct: 143 KIEYKRLMNQGHEIASDDLNLARCRSRYQLPEYLTHNALTDALATAELFLAQLNQ 197 >gi|327483977|gb|AEA78384.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4] Length = 233 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 53/184 (28%), Gaps = 16/184 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57 + D ETTGL+++ D I+ IG V ++ + P +G +S Sbjct: 45 VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEDESIVFHGITHSE 104 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + I + I+ N +V + Sbjct: 105 LQHAQAPEQVLKELLEALHGKIVVVHFRHIERDFLRQISLNIWGEVIEFPVLDTLEIERQ 164 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L + I RR PS R R + S H AL D+ ++++ Sbjct: 165 LLDKQRSLWQRITRRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 220 Query: 178 GSQI 181 Sbjct: 221 HLPP 224 >gi|242077240|ref|XP_002448556.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor] gi|241939739|gb|EES12884.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor] Length = 283 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52 +VFD+ETTG ++RI+E +L + TFQ + P Sbjct: 85 FLVFDLETTGFFHVDNRIVEFALRDLSGGK--DCTFQTLINPER 126 >gi|168177595|ref|ZP_02612259.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum NCTC 2916] gi|182670548|gb|EDT82522.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum NCTC 2916] Length = 309 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 68/219 (31%), Gaps = 11/219 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D+ F I+ + +F N IAHNA FD+ + + L+ N I Sbjct: 58 PHMVQDELEFDKIWGKIKGYF--NNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTM 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG------SQ 180 LN++ G H + + K + Sbjct: 116 KLSKNFYSNIDNARLNTVNNFLGYKFKHHDALADAMACSNILINISKELNSKDINEISKL 175 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 I + +K + R P + T E Sbjct: 176 IGVTLGYVNEDGYKPSSTKGRILKRSNRQAPRENKKTIE 214 >gi|149910647|ref|ZP_01899284.1| DNA polymerase III subunit epsilon [Moritella sp. PE36] gi|149806274|gb|EDM66250.1| DNA polymerase III subunit epsilon [Moritella sp. PE36] Length = 239 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR 53 + D ETTGLDS+ + II IG V + ++ P + Sbjct: 48 FVALDFETTGLDSEQNSIISIGLVPFNLQRIFCRQAQHWYIEPEDK 93 >gi|325858421|ref|ZP_08172583.1| exonuclease [Prevotella denticola CRIS 18C-A] gi|325483059|gb|EGC86047.1| exonuclease [Prevotella denticola CRIS 18C-A] Length = 178 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 7/174 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +++ D ET + + + +G V + + TF + P + Sbjct: 12 LQEIMQNFAAIDFET--ANFERSSVCSVGVVIVRGG-EVADTFYSLVHPEPNYYQWRCTQ 68 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG+T E P FS +++ +AHNA FD G + A Q D D Sbjct: 69 VHGLTREDTDGAPVFSKVWARIEPLIEG--LPLVAHNAPFDKGCLRACFQTYRMDYPDYE 126 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + R S + L+++ G H AL D+ + + +++ Sbjct: 127 FLDTLRAARRVFPHLSNHQLHTVSAACG--YDLSRHHHALADAEACAWIAREIL 178 >gi|317128841|ref|YP_004095123.1| exonuclease RNase T and DNA polymerase III [Bacillus cellulosilyticus DSM 2522] gi|315473789|gb|ADU30392.1| Exonuclease RNase T and DNA polymerase III [Bacillus cellulosilyticus DSM 2522] Length = 256 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 14/196 (7%) Query: 7 MRKIVFDIETTGLDSKNDR-----IIEIGAVELLDYS---KTNRTFQVFLCPNGRKNSPE 58 M IVFD+ETT +R IIEIGAV+L++ + FQ ++ P + S Sbjct: 1 MDVIVFDLETT---RNMNRSSMQYIIEIGAVKLVNRGGKLSYHSRFQAYVLPPNKYVSKA 57 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + + K +F + + A + + + + Sbjct: 58 DREFIHASKMDFKHAKKLRDTMRQFIHWIGNKPYYLCAWSTSDLHILVRNYVYGQKYNLS 117 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D +R + + ++H A+ D+ + + ++ Sbjct: 118 WIENYNDLQQKFGEMININRQISLTDSLKMSGIKLEGNQHSAIDDAMNTAKI---LLTYQ 174 Query: 179 SQINFGFKTNEDRFFK 194 S I + F + Sbjct: 175 SHIPLDMNSQSSLFSQ 190 >gi|332969609|gb|EGK08627.1| DNA polymerase III, epsilon subunit [Kingella kingae ATCC 23330] Length = 463 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M ++ D+ETTG DRI E+ + ++ + P ++ SP KL GI Sbjct: 26 MPVVILDLETTGGHFVQDRITEVAFLRFWQGDVQRVSY--LVNPQ-KEISPFVQKLTGID 82 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ ++ P+ + I + A +IAHN++FD + + + + + Sbjct: 83 NQMVRRAPALAKILPDLLPLLRG--ALFIAHNSRFD--YTFWRNECQRAGVAFAALTLCS 138 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R+ +P S+H A+ D L+ + + Sbjct: 139 VQLSRKLYPQYHKHSLDSIIERNGL-IVPSRHRAMADVDALAQFLQQALQEHG 190 >gi|297578613|ref|ZP_06940541.1| ribonuclease T [Vibrio cholerae RC385] gi|297536207|gb|EFH75040.1| ribonuclease T [Vibrio cholerae RC385] Length = 249 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L T + P G AL+ G Sbjct: 39 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD F+ A +R Sbjct: 99 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 159 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 218 Query: 176 VGGSQIN 182 + Sbjct: 219 NQWKALG 225 >gi|258622020|ref|ZP_05717049.1| ribonuclease T [Vibrio mimicus VM573] gi|258627109|ref|ZP_05721905.1| ribonuclease T [Vibrio mimicus VM603] gi|262171988|ref|ZP_06039666.1| ribonuclease T [Vibrio mimicus MB-451] gi|258580627|gb|EEW05580.1| ribonuclease T [Vibrio mimicus VM603] gi|258585773|gb|EEW10493.1| ribonuclease T [Vibrio mimicus VM573] gi|261893064|gb|EEY39050.1| ribonuclease T [Vibrio mimicus MB-451] Length = 224 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L T + P G AL+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD F+ A +R Sbjct: 80 IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 199 Query: 176 VGGSQIN 182 + Sbjct: 200 NQWKALG 206 >gi|242309952|ref|ZP_04809107.1| DNA polymerase III subunit epsilon [Helicobacter pullorum MIT 98-5489] gi|239523249|gb|EEQ63115.1| DNA polymerase III subunit epsilon [Helicobacter pullorum MIT 98-5489] Length = 247 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 7/123 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I++ K + DIET G + + IEIGA+ + + FQ F+ + K Sbjct: 66 IKEQK--FCIVDIETNGHNPFLHQPIEIGAILYQNGM-VQKEFQSFV--FCEEIPEYITK 120 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + IT E L++ P + F + ++AHN FD GF++ L L Sbjct: 121 ITNITTEMLRNAPPIHQVLESF--RIFLGDCVFVAHNVGFDYGFLSNSLHHYGFGYLYNP 178 Query: 122 RII 124 + Sbjct: 179 SLC 181 >gi|254291880|ref|ZP_04962663.1| ribonuclease T [Vibrio cholerae AM-19226] gi|150422240|gb|EDN14204.1| ribonuclease T [Vibrio cholerae AM-19226] Length = 224 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L T + P G AL+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD F+ A +R Sbjct: 80 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 199 Query: 176 VGGSQIN 182 + Sbjct: 200 NQWKALG 206 >gi|153823922|ref|ZP_01976589.1| ribonuclease T [Vibrio cholerae B33] gi|126518562|gb|EAZ75785.1| ribonuclease T [Vibrio cholerae B33] Length = 227 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L T + P G AL+ G Sbjct: 23 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 82 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD F+ A +R Sbjct: 83 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 142 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 143 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 202 Query: 176 VGGSQIN 182 + Sbjct: 203 NQWKALG 209 >gi|121728127|ref|ZP_01681163.1| ribonuclease T [Vibrio cholerae V52] gi|121629595|gb|EAX62017.1| ribonuclease T [Vibrio cholerae V52] Length = 212 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L T + P G AL+ G Sbjct: 8 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 67 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD F+ A +R Sbjct: 68 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 127 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 128 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 187 Query: 176 VGGSQIN 182 + Sbjct: 188 NQWKALG 194 >gi|229505395|ref|ZP_04394905.1| ribonuclease T [Vibrio cholerae BX 330286] gi|229510935|ref|ZP_04400414.1| ribonuclease T [Vibrio cholerae B33] gi|229512432|ref|ZP_04401905.1| ribonuclease T [Vibrio cholerae TMA 21] gi|229518056|ref|ZP_04407500.1| ribonuclease T [Vibrio cholerae RC9] gi|229529900|ref|ZP_04419290.1| ribonuclease T [Vibrio cholerae 12129(1)] gi|229608414|ref|YP_002879062.1| ribonuclease T [Vibrio cholerae MJ-1236] gi|255744788|ref|ZP_05418739.1| ribonuclease T [Vibrio cholera CIRS 101] gi|262151277|ref|ZP_06028413.1| ribonuclease T [Vibrio cholerae INDRE 91/1] gi|262167159|ref|ZP_06034872.1| ribonuclease T [Vibrio cholerae RC27] gi|14548237|sp|Q9KT97|RNT_VIBCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|229333674|gb|EEN99160.1| ribonuclease T [Vibrio cholerae 12129(1)] gi|229344771|gb|EEO09745.1| ribonuclease T [Vibrio cholerae RC9] gi|229350513|gb|EEO15460.1| ribonuclease T [Vibrio cholerae TMA 21] gi|229350900|gb|EEO15841.1| ribonuclease T [Vibrio cholerae B33] gi|229357618|gb|EEO22535.1| ribonuclease T [Vibrio cholerae BX 330286] gi|229371069|gb|ACQ61492.1| ribonuclease T [Vibrio cholerae MJ-1236] gi|255737819|gb|EET93213.1| ribonuclease T [Vibrio cholera CIRS 101] gi|262024380|gb|EEY43068.1| ribonuclease T [Vibrio cholerae RC27] gi|262030968|gb|EEY49596.1| ribonuclease T [Vibrio cholerae INDRE 91/1] Length = 224 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L T + P G AL+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD F+ A +R Sbjct: 80 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 199 Query: 176 VGGSQIN 182 + Sbjct: 200 NQWKALG 206 >gi|291067016|gb|ADD74132.1| DNA polymerase III epsilon subunit-like protein [Rickettsia felis] Length = 377 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 71/231 (30%), Gaps = 11/231 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK--TNRTFQVFLCPNGRKNSPEALKLHG 64 I D ETTGL + D+I+E+G V+ D + P + +L G Sbjct: 126 IFLDTETTGLSHEKDKILELGMVKFEYTEDGRIYQIVDELNQYQDPQ-QPIPLRITELTG 184 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITDE ++ K ++F + + A A + F + ++ Sbjct: 185 ITDEMVQGKAIDQEAVTQFLEEVDIIIAHNAAFDRPFFDRMFPEVITKVWGCSRVDIDWK 244 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK-MMVGGSQINF 183 + + + + H + + +K ++ + F Sbjct: 245 AEKIESHKLEYLTYKYNFFYEGHRAVIDCRAGLHLLAQTLPITKTLVLKQLLNNCHKTRF 304 Query: 184 GFKTNEDRFFKEEKKTVP----NISLLKRDKPLFTRITKEELDEHDKTIQT 230 + + ++ +I+ K + ++ L+ + + Sbjct: 305 NVWVHNAPYDSKDLLKSRGYRWSINPQANYKAWMIEVFEDTLETELTFLNS 355 >gi|240136987|ref|YP_002961456.1| hypothetical protein MexAM1_META1p0217 [Methylobacterium extorquens AM1] gi|240006953|gb|ACS38179.1| hypothetical protein, putative exonuclease domain [Methylobacterium extorquens AM1] Length = 297 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 8/211 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ET + + D +G + R + P + SP +++HGI Sbjct: 1 MKVVAIDFET--ANERRDSACAVGLAWIEGGRVVRRE-SRLIRPPQLRFSPGNIRVHGIL 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D P+F + +EF + +AHNA FD+G + A L + D + Sbjct: 58 PADVRDAPTFPEVIAEFLPDLSG--GLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 R + + L + R GI H A D+ +++ + + + Sbjct: 116 QIARRVFPDPAGHGLAKVASRLGIRF---EHHDAGEDAFACAEIALAALRETGAADIADL 172 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 T P + + R + Sbjct: 173 ARGLGLTPIRALTTPRRDMTRSTSAKALRAS 203 >gi|89890222|ref|ZP_01201732.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7] gi|89517137|gb|EAS19794.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7] Length = 466 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 7/172 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG +R+ EI V + + ++ + + P L GI + Sbjct: 8 YCVVDIETTGNRMTGNRMTEICIVRMRGDTILDK-YSSLIDPE-VLIPDYITTLTGIDNA 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F+ + E + ++ ++AHN FD + E +R++ D LS Sbjct: 66 MVASAPVFADVAEEILN--FTKDYIFVAHNVNFDYNVLRNEFKRLHHDFKRKKLCTVRLS 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L LC GI ++H A D+ ++ K++ + Sbjct: 124 RELIPG-MRSYSLGKLCDDIGIP--LINRHRAEGDTDATVILFQKLITIDQE 172 >gi|319956599|ref|YP_004167862.1| exonuclease rnase t and DNA polymerase iii [Nitratifractor salsuginis DSM 16511] gi|319419003|gb|ADV46113.1| Exonuclease RNase T and DNA polymerase III [Nitratifractor salsuginis DSM 16511] Length = 294 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 1/128 (0%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I+ D ETTG D++ DRI ++ + L + + + P H Sbjct: 1 MKTIILDTETTGTDAE-DRICQLAYLVLDESGEVVEHYNELCTPPLEIKYDAMAIHHITP 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + N + NA FD+ + E +D R++ Sbjct: 60 EMLEGKPACTETEGFRRLRELNSPENLLVIQNAPFDLAMLEKEGFENRMRLIDTFRLVRK 119 Query: 127 LSIARRKH 134 +H Sbjct: 120 FMPDSPQH 127 >gi|226947476|ref|YP_002802567.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A2 str. Kyoto] gi|226841365|gb|ACO84031.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A2 str. Kyoto] Length = 309 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 65/212 (30%), Gaps = 11/212 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D+ F I+ + +F N IAHNA FD+ + + L+ N I Sbjct: 58 PHMVQDELEFDKIWGKIKGYF--NNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTM 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG------SQ 180 LN++ G H + + K + Sbjct: 116 KLSKNFYSNIDNARLNTVNNFLGYKFKHHDALADAMACSNILINISKELNSKDINEISKL 175 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 I + +K + R P Sbjct: 176 IGVTLGYINENGYKPSSTKGRILKRSNRQSPR 207 >gi|59711532|ref|YP_204308.1| ribonuclease T [Vibrio fischeri ES114] gi|197335112|ref|YP_002155688.1| ribonuclease T [Vibrio fischeri MJ11] gi|59479633|gb|AAW85420.1| ribonuclease T (RNase T) [Vibrio fischeri ES114] gi|197316602|gb|ACH66049.1| ribonuclease T [Vibrio fischeri MJ11] Length = 222 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 72/202 (35%), Gaps = 14/202 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L K T + P G EAL+ +G Sbjct: 21 VVIDVETAGFNAKTDALLEICAVTLAMDEQGNLKPATTIHFHVTPFEGANIEKEALEFNG 80 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + + Q A +AHNA FD F+ R Sbjct: 81 IRDPFSPLRGAVTEDVALKEIFKLVRKEQKQHDCQRAIMVAHNAHFDHSFVMEAAARTKL 140 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + A + L CK G+ + H AL D+ ++++ +++ Sbjct: 141 KRIPFHPFCTFDTAAISGLALGQTVLAKACKTAGMDFDGKEAHSALYDTEKTAELFCRIV 200 Query: 176 VGGSQINFGFKTNEDRFFKEEK 197 + E Sbjct: 201 NKWKDLGGWPVMPEPENDTNNN 222 >gi|170758900|ref|YP_001785582.1| DNA polymerase III subunit epsilon [Clostridium botulinum A3 str. Loch Maree] gi|169405889|gb|ACA54300.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A3 str. Loch Maree] Length = 309 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 69/221 (31%), Gaps = 5/221 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D+ F I+ + +F N AHNA FD+ + L+ N I Sbjct: 58 PRMVQDELEFDKIWGKIKHYF--NNNLVTAHNASFDISVLRNTLKLYNIKMPSFDYICTM 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LN++ G H + + K + + Sbjct: 116 KLSKNFYSNIDNVRLNTVNNFLGYKFKHHDALADAMACSNILLNISKELNSKNINEISKL 175 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 + E P+ + + K + +KE + Sbjct: 176 VGVTLGYVNENGYKPSSTKGRILKRSNRQASKENKKIIENF 216 >gi|229525881|ref|ZP_04415286.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis VL426] gi|229339462|gb|EEO04479.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis VL426] Length = 236 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 52/184 (28%), Gaps = 16/184 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+++ D I+ IG V ++ + P+ + + Sbjct: 48 VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEDESIVFHGITHSD 107 Query: 69 FLKDKPS-----------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + I + I+ N + + Sbjct: 108 LQHAQAPEQVLKELLEALHGKIVVVHFRHIERDFLRQISLNIWGEAIEFPVLDTLEIERQ 167 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L + IARR PS R R + S H AL D+ ++++ Sbjct: 168 LLDKQRSLWQRIARRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 223 Query: 178 GSQI 181 Sbjct: 224 HLPP 227 >gi|88802793|ref|ZP_01118320.1| DNA polymerase III subunit [Polaribacter irgensii 23-P] gi|88781651|gb|EAR12829.1| DNA polymerase III subunit [Polaribacter irgensii 23-P] Length = 361 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 9/196 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + +S ++ F + P ++ ++L GI ++ Sbjct: 2 YAILDIETTGGKFNEEGITEIAIYKFDGHSVVDQ-FISLVNPE-KEIQQFVVRLTGINNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-INAELQRINKDPLDPSRIIDTL 127 L+ P F I + ++ +AHN FD + + ++ Sbjct: 60 MLRSAPKFYEIAKRIIE--ITKDCTLVAHNTTFDYRILSTEFDRLGYDFNRNTLCTVELS 117 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 PS + + I +H A D+ ++ ++ S Sbjct: 118 KQLILDQPSYSLGKLTKA----LGIPMTDRHRASGDALATVQLFKLLLEKDSTKTIIQNF 173 Query: 188 NEDRFFKEEKKTVPNI 203 + + EK+ + + Sbjct: 174 VKHHDQRFEKERLQKL 189 >gi|319952129|ref|YP_004163396.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM 14237] gi|319420789|gb|ADV47898.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM 14237] Length = 457 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 68/166 (40%), Gaps = 7/166 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + ++I EI + Y F + P + L GI + + Sbjct: 4 IIDIETTGNGIQGNKITEISIFKYDGYDVI-EEFTTLINPE-AEIPYFITGLTGIDNTMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ P FS + + + ++AHN FD I E + I D + + + T+ ++ Sbjct: 62 RNAPKFSEVADQILK--ITEETIFVAHNVSFDYNIIKHEFKAIGVDFI--RQKLCTVRLS 117 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 R+ P + + I +H A D+ + ++ K++ Sbjct: 118 RKLFPGYNSYSL-GKLCTALKIPLTDRHRARGDAEATTILFEKLLR 162 >gi|297578875|ref|ZP_06940803.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297536469|gb|EFH75302.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 236 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 55/184 (29%), Gaps = 16/184 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57 + D ETTGL+++ D I+ IG V N+ + P +G +S Sbjct: 48 VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQARYWLVKPSQPLEEESIVFHGITHSE 107 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + I + + + I+ N + + Sbjct: 108 LQHAQAPEQVLKELLEALHGKIVVVHFRYIEREFLRQISLNIWGEAIEFPVLDTLEIERQ 167 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L + IARR PS R R + S H AL D+ ++++ Sbjct: 168 LLDKQRSLWQRIARRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 223 Query: 178 GSQI 181 Sbjct: 224 HLPP 227 >gi|283785135|ref|YP_003365000.1| ribonuclease T [Citrobacter rodentium ICC168] gi|282948589|emb|CBG88180.1| ribonuclease T [Citrobacter rodentium ICC168] Length = 214 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNARTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A +AHNA FD F+ A +R + Sbjct: 80 IDPNNPLRGAVSEYDALHAIFKMVRKGIKDNGCNRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGTQAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|237738098|ref|ZP_04568579.1| predicted protein [Fusobacterium mortiferum ATCC 9817] gi|229419978|gb|EEO35025.1| predicted protein [Fusobacterium mortiferum ATCC 9817] Length = 474 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 81/212 (38%), Gaps = 11/212 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 I+ +ETTGL+ D I++I A+ + + + TF+ F+ P + EA +++GIT Sbjct: 6 NYIIVSLETTGLNHLVDEILKIEAIRIENGNIV-DTFKEFIKPK-FEIPKEASRINGITF 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +K+ PS + + + F ++ +A+NA+F FI +R I Sbjct: 64 EDVKNSPSIEDVL-DKFKNFRKKGDILVAYNAEFVSKFIGFNFKRYKNSIFSHEFIDLLS 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + +L + I +++ K + + + F Sbjct: 123 LVRYIYKNIPSYNLKYVATYLKIDSTNKDKTIICYEI---LKNLKNKIGDNQEKIFNGSE 179 Query: 188 -----NEDRFFKEEKKTVPNISLLKRDKPLFT 214 +++ K+ K +K+ L Sbjct: 180 CIIKYLDEKKLKKLNKDSGYKKEVKKKWLLII 211 >gi|54309733|ref|YP_130753.1| ribonuclease T [Photobacterium profundum SS9] gi|54036326|sp|Q6LP25|RNT_PHOPR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|46914171|emb|CAG20951.1| putative ribonuclease T [Photobacterium profundum SS9] Length = 223 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 16/204 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L + K T + P G EAL+ +G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPASTIHFHVAPFEGAVLHKEALEFNG 79 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD F+ +R Sbjct: 80 IRDPFSPLRGAVSEETALKEIYKQIRKEQKTADCSRAIMVAHNANFDHSFVMEASERARL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + A + L CK GI ++ H AL D+ ++++ +++ Sbjct: 140 KRNPFHPFATFDTAALSGLAFGQTVLAKACKTAGIAFDNKEAHSALYDTERTAELFCEIV 199 Query: 176 VGGSQINFG--FKTNEDRFFKEEK 197 ++ F++ + K + Sbjct: 200 NKWKKLGGWPLFESQTEEIDKSQN 223 >gi|42523607|ref|NP_968987.1| DNA polymerase III subunit epsilon [Bdellovibrio bacteriovorus HD100] gi|39575813|emb|CAE79980.1| DNA polymerase III polC-type [Bdellovibrio bacteriovorus HD100] Length = 295 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 78/231 (33%), Gaps = 16/231 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNR------TFQVFLCPNGRKNSPEALKLHG 64 + D+ETTGL+ D IIEIG + L + ++ F P G+ SPE L G Sbjct: 48 ILDVETTGLNQTEDTIIEIGIRQFLFNKNSGEVLAVTKSYSSFQDP-GKPISPEIQALTG 106 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITDE + K I D + IAHNAKFD FI+ + + S Sbjct: 107 ITDEMVAGK----QIDWTAVDALLNECQLIIAHNAKFDRPFIDRRSKTSPERVWACSFKQ 162 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL----LSDVYI-KMMVGGS 179 S P + L L Y+ +++ Sbjct: 163 VEWSDKGFTSPKLELLNIYHGFFTDSHRAINDVDALLYLLSLPDAETQKPYLFELISNAR 222 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 + F ++ + ++ I K+E+ + K ++ Sbjct: 223 RPMTHVIATSAPFESKDHLKGRGYNWDSINRFWSKIIFKDEVADETKWLEE 273 >gi|291276271|ref|YP_003516043.1| DNA polymerase III subunit epsilon [Helicobacter mustelae 12198] gi|290963465|emb|CBG39295.1| Putative dna polymerase III epsilon subunit [Helicobacter mustelae 12198] Length = 247 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 37/114 (32%), Positives = 51/114 (44%), Gaps = 5/114 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 DIETTG + IIEIGA++ TF+ + + +L GI L Sbjct: 69 FVDIETTGSKPNHSSIIEIGAIKYHGGEII-DTFETLV--FSQSVPENITELTGIDAGML 125 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 D PS + F F N+ ++AHN FD GFI+ L R N+ L R+ Sbjct: 126 ADAPSEREVLQRFRKFL--GNSVFVAHNVVFDYGFISDRLLRYNEPYLLNPRLC 177 >gi|156975262|ref|YP_001446170.1| ribonuclease T [Vibrio harveyi ATCC BAA-1116] gi|269962098|ref|ZP_06176452.1| ribonuclease T [Vibrio harveyi 1DA3] gi|166200023|sp|A7MUL2|RNT_VIBHB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|156526856|gb|ABU71942.1| hypothetical protein VIBHAR_02991 [Vibrio harveyi ATCC BAA-1116] gi|269833182|gb|EEZ87287.1| ribonuclease T [Vibrio harveyi 1DA3] Length = 214 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 14/195 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L T + P G EAL+ +G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHIEPFEGANLEKEALEFNG 79 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + + A +AHNA FD+ F+NA +R Sbjct: 80 IRDPFSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKAAGMEFDNREAHSALYDTQQTAELFCGIV 199 Query: 176 VGGSQINFGFKTNED 190 + +E+ Sbjct: 200 NKWKALGGWPLVDEE 214 >gi|307720491|ref|YP_003891631.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas autotrophica DSM 16294] gi|306978584|gb|ADN08619.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas autotrophica DSM 16294] Length = 269 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 16/212 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIET G + +IIE+ AV++ + +R F+ + + ++ +P ++ GI + Sbjct: 71 IVDIETNGSKIEKHQIIELAAVKVKNGQIIDR-FESLV--HTKEINPHITEITGIAADDT 127 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P + F NA ++AH+ KFD FI+ LQ+I +PL Sbjct: 128 TNAPQLKDVLIRF--KLFLGNAVFVAHDVKFDYSFISKSLQKIGLEPLLNRS--LCSLAL 183 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 + S S H A+ D +++ ++ Sbjct: 184 AERTVVSYRYALSYLNETLKLNPKARHHRAMSDVITTYGLFL--------LSLDNLDENI 235 Query: 191 RFFKEEKKTVPNISLLKRDKP-LFTRITKEEL 221 + ++ K LKR K + +EE Sbjct: 236 KTVEDLIKFSKEAPRLKRPKFDPLLEVKQEEK 267 >gi|304387160|ref|ZP_07369404.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC 13091] gi|304338764|gb|EFM04874.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC 13091] gi|325201850|gb|ADY97304.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240149] Length = 470 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + +AHN++FD F+ + S + + Sbjct: 85 DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRVGIGFSSPALCS 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192 >gi|254805232|ref|YP_003083453.1| putative DNA polymerase III subunit [Neisseria meningitidis alpha14] gi|254668774|emb|CBA06684.1| putative DNA polymerase III subunit [Neisseria meningitidis alpha14] Length = 461 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + +AHN++FD F+ + S + + Sbjct: 76 DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRVGIGFSSPALCS 131 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 132 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 183 >gi|161870321|ref|YP_001599491.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442] gi|161595874|gb|ABX73534.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442] Length = 461 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + +AHN++FD F+ + S + + Sbjct: 76 DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRVGIGFSSPALCS 131 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 132 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 183 >gi|15610847|ref|NP_218228.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis H37Rv] gi|148663576|ref|YP_001285099.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis H37Ra] gi|167970866|ref|ZP_02553143.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis H37Ra] gi|306778068|ref|ZP_07416405.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu001] gi|306974185|ref|ZP_07486846.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu010] gi|307081893|ref|ZP_07491063.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu011] gi|307086506|ref|ZP_07495619.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu012] gi|2960135|emb|CAA18033.1| PROBABLE DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ [Mycobacterium tuberculosis H37Rv] gi|148507728|gb|ABQ75537.1| DNA polymerase III subunit epsilon DnaQ [Mycobacterium tuberculosis H37Ra] gi|308213597|gb|EFO72996.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu001] gi|308356458|gb|EFP45309.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu010] gi|308360405|gb|EFP49256.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu011] gi|308364101|gb|EFP52952.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu012] Length = 329 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 7/197 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +P F+ I E D +AHN FD F+ AE + + + Sbjct: 75 DGQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R + L +L +G+ H A D +L+ + + +++ + Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDVRVLTGILAAALESARELDVWLPVHPV 190 Query: 191 RFFKEEKKTVPNISLLK 207 + V + L Sbjct: 191 TRRRWPNGRVTHDELRP 207 >gi|157165763|ref|YP_001466765.1| DNA polymerase III subunit epsilon [Campylobacter concisus 13826] gi|112800127|gb|EAT97471.1| DNA polymerase III subunit epsilon [Campylobacter concisus 13826] Length = 267 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 6/98 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG + N +IIEIGA+++ + ++ R F+ F+ +L GI L Sbjct: 78 VVDIETTGG-TTNGQIIEIGAIKMKNGTEIGR-FESFV--AASVVPENITELTGIRASDL 133 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 P+ ++ F + +IAHN FD GFI+ Sbjct: 134 VGAPNLLNVLERF--KIFLGTSVFIAHNVNFDYGFISH 169 >gi|229529628|ref|ZP_04419018.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)] gi|229333402|gb|EEN98888.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)] Length = 236 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 53/184 (28%), Gaps = 16/184 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57 + D ETTGL+++ D I+ IG V ++ + P +G +S Sbjct: 48 VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEEESIVFHGITHSE 107 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + I + + I+ N + + Sbjct: 108 LQHAQAPEQVLKELLEALHGKIVVVHFRHIEREFLRQISLNIWGEAIEFPVLDTLEIERQ 167 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L + I R+ PS R R + S H AL D+ ++++ Sbjct: 168 LLDKQRSLWQRITRQPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 223 Query: 178 GSQI 181 Sbjct: 224 HLPP 227 >gi|15616807|ref|NP_240019.1| ribonuclease T [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681560|ref|YP_002467946.1| ribonuclease T [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682118|ref|YP_002468502.1| ribonuclease T [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471245|ref|ZP_05635244.1| ribonuclease T [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11387052|sp|P57285|RNT_BUCAI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|25356015|pir||A84952 ribonuclease T [imported] - Buchnera sp. (strain APS) gi|10038870|dbj|BAB12905.1| ribonuclease T [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621851|gb|ACL30007.1| ribonuclease T [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624403|gb|ACL30558.1| ribonuclease T [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085930|gb|ADP66012.1| ribonuclease T [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086501|gb|ADP66582.1| ribonuclease T [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087083|gb|ADP67163.1| ribonuclease T [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087635|gb|ADP67714.1| ribonuclease T [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 221 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 58/208 (27%), Gaps = 27/208 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCPNGRKNSPEALKLHGI 65 +V DIET G ++ D ++EI + L T + P + Sbjct: 20 VVIDIETAGFNANTDAVLEIAIITLKMDELGWLHKEDTLHFHIEP-------FKGSIINS 72 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 F+ + + Q+ N G + N + + Sbjct: 73 DAIAFNKIDPFNPLRGAISEKIAIQSILKKVRNGIKIQGCSRGIVVAHNANFDHNFLMAA 132 Query: 126 TLSIARRKHPSSRNDLNSL----------------CKRYGITISHRSKHGALLDSHLLSD 169 + + +P CK G++ + H AL D+ ++ Sbjct: 133 IQRVKIKNNPFHPFATFDTAALSGLVVGQTVLSKACKAIGLSFDNHQAHSALYDTLQTAN 192 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEK 197 ++ +++ ++ + K Sbjct: 193 LFCELVNRWKRLGGWPVDIKKNNSTSNK 220 >gi|88811452|ref|ZP_01126707.1| ribonuclease T [Nitrococcus mobilis Nb-231] gi|88791341|gb|EAR22453.1| ribonuclease T [Nitrococcus mobilis Nb-231] Length = 222 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIET GL++ D ++++ AV + T+ + P +G P++L+ + Sbjct: 28 VVVDIETGGLNASTDALLQLAAVIVRMDEDKRVFPAGTYSTHVEPFDGANIDPKSLEFNR 87 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I A + HN+ FD+ F+NA + R Sbjct: 88 IDPNHPLRMAKPEEEALRHIFRPIRREIRETGCTRAILVGHNSWFDLCFLNAAVARTGIR 147 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L K G + R H A+ D+ ++++ ++ Sbjct: 148 RNPFHPFTSFDTATLGGLAFGQTVLARAVKASGASWDGREAHSAIYDAEKTAELFCTIVN 207 Query: 177 GGSQIN 182 ++N Sbjct: 208 RWDRLN 213 >gi|323496850|ref|ZP_08101887.1| ribonuclease T [Vibrio sinaloensis DSM 21326] gi|323318109|gb|EGA71083.1| ribonuclease T [Vibrio sinaloensis DSM 21326] Length = 220 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 71/201 (35%), Gaps = 14/201 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L + T + P G EAL G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLKMDENGDLQPASTIHFHVEPFEGANIEKEALDFIG 79 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 + D F + + + + A +AHNA+FD F+ +R Sbjct: 80 LRDPFSPLRGAIPESEALKEIYKLVRKEQKAADCSRAIIVAHNAQFDHSFVMQASERSKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ ++ H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKAAGMDFDNKEAHSALYDTQKTAELFCGIV 199 Query: 176 VGGSQINFGFKTNEDRFFKEE 196 + D E Sbjct: 200 NKWKALGGWPLVEPDANNNNE 220 >gi|222109241|ref|YP_002551505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY] gi|221728685|gb|ACM31505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY] Length = 218 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 5/115 (4%) Query: 11 VFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG + ++ R E+ V + +R +Q + G + P +L GIT+ Sbjct: 8 VIDFETTGMMPAQGARATEVAIVLMEGGRVVDR-YQSLMR-TGVRIPPFITQLTGITNAM 65 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ++ P +++ E F + AHNA FD F AE+Q P Sbjct: 66 VEAAPDAAAVMREAARFVGDAPMV--AHNAAFDRKFWQAEMQHAGLAAPHPFACT 118 >gi|168180760|ref|ZP_02615424.1| exonuclease family protein [Clostridium botulinum NCTC 2916] gi|182668520|gb|EDT80499.1| exonuclease family protein [Clostridium botulinum NCTC 2916] Length = 253 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 70/207 (33%), Gaps = 15/207 (7%) Query: 7 MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-S 56 M I+FD+E + + II+IGA++L + T TF + P N + Sbjct: 1 MNYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSNLN 57 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAELQRIN 114 P L +T + L F ++ +F +F N+ + ++ + Sbjct: 58 PFVKNLTNLTMDSLNKANPFREVYKDFLEFLNKNRNIFCIWGMTDMKELFRNIVYYELDT 117 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + + +P S N S + H A D+ ++V+ K+ Sbjct: 118 ESMPKEYINVQAYTGKYLNYPKSINVGLSNAVELFHITKNNDFHNAFNDAFYTAEVFKKI 177 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP 201 + TN ++ + Sbjct: 178 YSEKIKTKIYKPTNNSTTYRNKNTKTR 204 >gi|297184143|gb|ADI20262.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 442 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 6/134 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR V DIE TG ++RII++ L + ++ + P + P KL GIT Sbjct: 1 MRFAVIDIECTGGTFGSERIIDVAIFVLENGEVVDQ-LVSLVNPE-KGIDPYVTKLTGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ ++ P F + ++ ++AHN FD E + + D +DT Sbjct: 59 NKMVRTAPKFYELAKRVVK--ITEDCTFVAHNISFDYRVFQQEFESMEFD--YHRATLDT 114 Query: 127 LSIARRKHPSSRND 140 + R P N Sbjct: 115 IPYCERIFPDWENY 128 >gi|257867351|ref|ZP_05647004.1| exonuclease [Enterococcus casseliflavus EC30] gi|257873684|ref|ZP_05653337.1| exonuclease [Enterococcus casseliflavus EC10] gi|257877427|ref|ZP_05657080.1| exonuclease [Enterococcus casseliflavus EC20] gi|257801407|gb|EEV30337.1| exonuclease [Enterococcus casseliflavus EC30] gi|257807848|gb|EEV36670.1| exonuclease [Enterococcus casseliflavus EC10] gi|257811593|gb|EEV40413.1| exonuclease [Enterococcus casseliflavus EC20] Length = 180 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 68/178 (38%), Gaps = 10/178 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + + + V + D + + P + +++HGI Sbjct: 4 MNFIAMDFET--ANYQKHSACSLALVMVQDSKIVGE-YYTLIQPETEFF-WKNIQIHGIR 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +++ P F ++ + ++ + +AHNA FD G + L + + Sbjct: 60 PEDVQEAPKFPDVWKQIQQYYQLNSLI-VAHNAGFDTGVLAGCLDYYGLSQPNYLSLCTV 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + + + + LN++C++ I + H AL DS + + ++ + Sbjct: 119 RTSRKLYPEFTNHKLNTVCEQLQIP--LLNHHDALEDSRACAQI---LLRQEEEFGID 171 >gi|219852875|ref|YP_002467307.1| Exonuclease RNase T and DNA polymerase III [Methanosphaerula palustris E1-9c] gi|219547134|gb|ACL17584.1| Exonuclease RNase T and DNA polymerase III [Methanosphaerula palustris E1-9c] Length = 193 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 10/67 (14%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 + FD ETTGL K RI+E+G V + + P+G E Sbjct: 2 YLFFDTETTGLPKKKHASMHRVANWPRIVELGWVLTDTKGTVIEEAGLLVRPDGFSVPAE 61 Query: 59 ALKLHGI 65 + +HGI Sbjct: 62 STAIHGI 68 >gi|85059419|ref|YP_455121.1| ribonuclease T [Sodalis glossinidius str. 'morsitans'] gi|84779939|dbj|BAE74716.1| ribonuclease T [Sodalis glossinidius str. 'morsitans'] Length = 234 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 73/211 (34%), Gaps = 13/211 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++ D ++EI AV ++ D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAVTDALLEIAAVTLKMDDDGWLQADSTLHFHVDPFPGALLQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A +AHNA FD GF+ A + R Sbjct: 80 IDPHNPLRGAVGEYEALHEIFKMVRKGIKDQGCNRAIIVAHNAAFDHGFLMAAVSRAGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C GI + H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKACAAAGIAFNSGEAHSALYDTERTATLFCELVN 199 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207 ++ EE+ Sbjct: 200 RWKRLGGWPVAMPAPGDAEEEAVAAQDRANP 230 >gi|325288090|ref|YP_004263880.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489] gi|324323544|gb|ADY31009.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489] Length = 447 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 7/105 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D+ETTG + ++I EI + + F + P L GI Sbjct: 1 MMYTIIDVETTG---QTNKITEISIFKFDGDKVVDE-FTSLVNPEDV-IPYYITTLTGID 55 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 + + + P+F+ I + D ++ ++AHN FD I E + Sbjct: 56 NAMVANAPTFAEIAQQVLD--ITEDTIFVAHNVNFDYNVIRNEFK 98 >gi|255530778|ref|YP_003091150.1| DNA polymerase III subunit alpha [Pedobacter heparinus DSM 2366] gi|255343762|gb|ACU03088.1| DNA polymerase III, alpha subunit [Pedobacter heparinus DSM 2366] Length = 1476 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 73/230 (31%), Gaps = 19/230 (8%) Query: 9 KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL D R I+I + + P+G + Sbjct: 2 YLIFDTETTGLPRNWNAPITDTDNWPRCIQIAWQLHDELGNMIEHQDYLVKPDGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---------E 109 A ++HGI+ E ++ + E ++ + + N FDV + Sbjct: 62 AERIHGISTELATEQGIELAEVLEKFNIALSKAKFVVGQNIGFDVNIMGCELYRLGVESP 121 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++ + L + + + + +Y H A D + Sbjct: 122 MAQMPVLDTCTEITAELLKLPGGRGGKFKLPNLTELHQYLFGEPFAEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 +++++ + + ++ + ++ T + + + E Sbjct: 182 CFLQLIKIDAFRPEQLQADQQYITRFKQNTPQVFERVGLNHINLKAASDE 231 >gi|153830906|ref|ZP_01983573.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39] gi|229515666|ref|ZP_04405125.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21] gi|148873606|gb|EDL71741.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39] gi|229347435|gb|EEO12395.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21] Length = 236 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 53/184 (28%), Gaps = 16/184 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57 + D ETTGL+++ D I+ IG V N+ + P +G +S Sbjct: 48 VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQARYWLVKPSQPLEEESIVFHGITHSE 107 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + I + + I+ N + + Sbjct: 108 LQYAQAPEQVLKELLEALNGKIVVVHFRHIEREFLRQISLNIWGEAIEFPVLDTLEIERQ 167 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L + I RR PS R R + S H AL D+ ++++ Sbjct: 168 LLDKQRSLWQRITRRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 223 Query: 178 GSQI 181 Sbjct: 224 HLPP 227 >gi|120435022|ref|YP_860708.1| exonuclease family protein [Gramella forsetii KT0803] gi|117577172|emb|CAL65641.1| exonuclease family protein [Gramella forsetii KT0803] Length = 457 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 4/116 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + ++ F + P + P + L GI ++ Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKFDGQKVVDQ-FISLVNPE-QPIQPFVVNLTGINND 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 LK+ P F + + ++ +AHNAKFD + E +R+ + S Sbjct: 60 MLKNAPKFYEVAKRIVE--ITEDCILVAHNAKFDYRILRTEFRRLGFEYERKSLCT 113 >gi|187777136|ref|ZP_02993609.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC 15579] gi|187774064|gb|EDU37866.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC 15579] Length = 309 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 75/212 (35%), Gaps = 11/212 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIIEKV-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D+ F I+ + +F N IAHNA FD+ + + L+ N I Sbjct: 58 PHMVQDELEFDKIWGKIKGYF--NNNLVIAHNASFDMSVLRSTLELYNIKMPSFEYICTM 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSK-HGALLDSHLLSDVYIKM-MVGGSQIN-- 182 LN++ G H A+ S++L ++ ++ + ++I+ Sbjct: 116 KLSKNFYSNIDNAKLNTVNNFLGYKFQHHDALADAMACSNILLNISKELNLKNINEISKL 175 Query: 183 --FGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 + +K + R P Sbjct: 176 VGVTLGYVNENGYKPSSTKGRILKRSNRQAPK 207 >gi|325208398|gb|ADZ03850.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis NZ-05/33] Length = 469 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 27 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 83 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + +AHN++FD F+ + S + + Sbjct: 84 DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 139 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 140 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 191 >gi|325204438|gb|ADY99891.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240355] Length = 470 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + +AHN++FD F+ + S + + Sbjct: 85 DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192 >gi|325140605|gb|EGC63125.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis CU385] Length = 469 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 27 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 83 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + +AHN++FD F+ + S + + Sbjct: 84 DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 139 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 140 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 191 >gi|325136504|gb|EGC59108.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M0579] Length = 469 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 27 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 83 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + +AHN++FD F+ + S + + Sbjct: 84 DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 139 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 140 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 191 >gi|325134568|gb|EGC57212.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M13399] gi|325144729|gb|EGC67024.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240013] gi|325205795|gb|ADZ01248.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M04-240196] Length = 470 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + +AHN++FD F+ + S + + Sbjct: 85 DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192 >gi|325130506|gb|EGC53261.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis OX99.30304] Length = 470 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + +AHN++FD F+ + S + + Sbjct: 85 DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192 >gi|319410698|emb|CBY91078.1| putative DnaQ-like exonuclease [Neisseria meningitidis WUE 2594] Length = 461 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + +AHN++FD F+ + S + + Sbjct: 76 DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 132 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 183 >gi|308389143|gb|ADO31463.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis alpha710] Length = 461 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + +AHN++FD F+ + S + + Sbjct: 76 DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 132 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 183 >gi|261392288|emb|CAX49811.1| putative DnaQ-like exonuclease [Neisseria meningitidis 8013] Length = 470 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + +AHN++FD F+ + S + + Sbjct: 85 DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192 >gi|254672325|emb|CBA05474.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria meningitidis alpha275] Length = 312 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + +AHN++FD F+ + S + + Sbjct: 76 DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 132 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 183 >gi|254670274|emb|CBA05558.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria meningitidis alpha153] Length = 461 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + +AHN++FD F+ + S + + Sbjct: 76 DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 132 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 183 >gi|15677307|ref|NP_274462.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58] gi|7226692|gb|AAF41810.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58] gi|316984587|gb|EFV63552.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Neisseria meningitidis H44/76] gi|325199934|gb|ADY95389.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76] Length = 470 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + +AHN++FD F+ + S + + Sbjct: 85 DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192 >gi|15641021|ref|NP_230652.1| ribonuclease T [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227081180|ref|YP_002809731.1| ribonuclease T [Vibrio cholerae M66-2] gi|254848136|ref|ZP_05237486.1| ribonuclease T [Vibrio cholerae MO10] gi|298498880|ref|ZP_07008687.1| ribonuclease T [Vibrio cholerae MAK 757] gi|9655469|gb|AAF94167.1| ribonuclease T [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227009068|gb|ACP05280.1| ribonuclease T [Vibrio cholerae M66-2] gi|254843841|gb|EET22255.1| ribonuclease T [Vibrio cholerae MO10] gi|297543213|gb|EFH79263.1| ribonuclease T [Vibrio cholerae MAK 757] Length = 243 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L T + P G AL+ G Sbjct: 39 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD F+ A +R Sbjct: 99 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 159 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 218 Query: 176 VGGSQIN 182 + Sbjct: 219 NQWKALG 225 >gi|218768453|ref|YP_002342965.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491] gi|121052461|emb|CAM08798.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491] Length = 470 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + +AHN++FD F+ + S + + Sbjct: 85 DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192 >gi|317505660|ref|ZP_07963563.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM 15606] gi|315663245|gb|EFV03009.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM 15606] Length = 901 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 21/30 (70%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 +FD ETTGLD +D I++I AV+L + + Sbjct: 509 IFDTETTGLDVFSDDILQIAAVQLKNGAVV 538 >gi|51849608|dbj|BAD42331.1| DNA helicase RecG [Nannochloris bacillaris] Length = 1341 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 IVFD+ETTGL + D +EI A + + RTF + Sbjct: 137 IVFDLETTGLSKEKDHPVEIAA----EAPLSGRTFSTLIR 172 >gi|325279480|ref|YP_004252022.1| Exonuclease RNase T and DNA polymerase III [Odoribacter splanchnicus DSM 20712] gi|324311289|gb|ADY31842.1| Exonuclease RNase T and DNA polymerase III [Odoribacter splanchnicus DSM 20712] Length = 190 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 62/182 (34%), Gaps = 16/182 (8%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 + FD ETTGL + + R++++ + D + V + P G PE Sbjct: 2 YLFFDTETTGLPKRWNAPVTDLENWPRLVQLAWIMYDDRGNMLESRDVIVKPEGFTIPPE 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV---GFINAELQRINK 115 A ++HGIT ++K E + ++ + HN FD G L+ + Sbjct: 62 ASRVHGITTLVAREKGEPLQEVMEQFARKIDEATALVGHNISFDECIVGAEFERLRMMTT 121 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL---DSHLLSDVYI 172 L P LS K P + + + A D + + Sbjct: 122 LFLKPKYCTMKLSTDYCKLPGKKGFKSPRLAELHQVLFGSGFDNAHNALADVEATARCFW 181 Query: 173 KM 174 ++ Sbjct: 182 EL 183 >gi|153829717|ref|ZP_01982384.1| Gp39 [Vibrio cholerae 623-39] gi|148874796|gb|EDL72931.1| Gp39 [Vibrio cholerae 623-39] Length = 192 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 61/178 (34%), Gaps = 23/178 (12%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ETTGLDSK+ +I+E+ A+ + + P G EA ++HGIT+ + Sbjct: 11 ILDTETTGLDSKS-QIVEVTAICAKSGELI---YSSLVRPQG-FIPAEATRIHGITNSDV 65 Query: 71 KDKPSF------------------SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 D P+F + + F + + + + Sbjct: 66 ADAPTFLDIIYPLSLALRNRTGIIYNADFDSRMFIQSYERNLQISHLDLRSAYFALKHKL 125 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +N L + C++ GI IS + H AL D + + Sbjct: 126 LNSQCAMNWYAQFWGEFDTTNGGYRWQRLTNACQQQGIDISDLTAHRALADCEMTRRL 183 >gi|330004210|ref|ZP_08304836.1| exonuclease [Klebsiella sp. MS 92-3] gi|328536727|gb|EGF63048.1| exonuclease [Klebsiella sp. MS 92-3] Length = 180 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 61/165 (36%), Gaps = 6/165 (3%) Query: 12 FDIETTGLD-SKNDRIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 DIETTGLD +IIEI V EL K N + P R +A +H I+ E Sbjct: 7 IDIETTGLDVYSGHKIIEIALVSYELETSRKINEV-SLRFNP-RRNIDAKAQAVHHISLE 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P F + W+AHN + + R L +IDT+ Sbjct: 65 MLADCPLFEDKAASLAKA-LAAADVWVAHNGRQFDIPFITKQMRDCGVELIQRPLIDTMD 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L L G HGAL D+ L+ +IK Sbjct: 124 ARWACESGKIPRLQELAVAMGFVYDEEKAHGALYDTDLMMQCFIK 168 >gi|259908542|ref|YP_002648898.1| ribonuclease T [Erwinia pyrifoliae Ep1/96] gi|224964164|emb|CAX55671.1| Ribonuclease T [Erwinia pyrifoliae Ep1/96] gi|283478503|emb|CAY74419.1| ribonuclease T [Erwinia pyrifoliae DSM 12163] Length = 219 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 66/186 (35%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP--NGRKNSPEALKLH 63 +V D+ET G D+K + ++EI AV L + + + T + P Sbjct: 20 VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDDTLHFHVEPFAGSVLLPEALTFNG 79 Query: 64 GITDEF-------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + + + + A +AHNA FD+ F+NA +R + Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L C G+ H AL D+ +D++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLAKACHAAGMAFDSAQAHSALYDTLQTADLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|153826601|ref|ZP_01979268.1| DNA polymerase III subunit epsilon [Vibrio cholerae MZO-2] gi|149739613|gb|EDM53833.1| DNA polymerase III subunit epsilon [Vibrio cholerae MZO-2] Length = 233 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 54/184 (29%), Gaps = 16/184 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57 + D ETTGL+++ D I+ IG V N+ + P +G +S Sbjct: 45 VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQARYWLVKPSQPLEEGSIVFHGITHSE 104 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + + I + + I+ N + + Sbjct: 105 LQHAQAPEQVLKELLEALYGKIVVVHFRHIEREFLRQISLNIWDEAIEFPVLDTLEIERQ 164 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L + I RR PS R R + S H AL D+ ++++ Sbjct: 165 LLDKQRSLWQRITRRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 220 Query: 178 GSQI 181 Sbjct: 221 HLPP 224 >gi|153212279|ref|ZP_01948067.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae 1587] gi|124116657|gb|EAY35477.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae 1587] Length = 236 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 55/184 (29%), Gaps = 16/184 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57 + D ETTGL+++ D I+ IG V N+ + P +G +S Sbjct: 48 VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQARYWLVKPSQPLEEGSIVFHGITHSE 107 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + + I + + I+ N + + Sbjct: 108 LQHAQAPEQVLKELLEALYGKIVVVHFRHIEREFLRQISLNIWDEAIEFPVLDTLEIERQ 167 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L + IARR PS R R + S H AL D+ ++++ Sbjct: 168 LLDKQRSLWQRIARRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 223 Query: 178 GSQI 181 Sbjct: 224 HLPP 227 >gi|262402653|ref|ZP_06079214.1| ribonuclease T [Vibrio sp. RC586] gi|262351435|gb|EEZ00568.1| ribonuclease T [Vibrio sp. RC586] Length = 224 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L T + P G AL+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD F+ A +R Sbjct: 80 IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + A + L CK G+ +R H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTAALSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 199 Query: 176 VGGSQIN 182 + Sbjct: 200 NRWKALG 206 >gi|261211954|ref|ZP_05926240.1| ribonuclease T [Vibrio sp. RC341] gi|260838562|gb|EEX65213.1| ribonuclease T [Vibrio sp. RC341] Length = 224 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L T + P G AL+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD F+ A +R Sbjct: 80 IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + A + L CK G+ +R H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTAALSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 199 Query: 176 VGGSQIN 182 + Sbjct: 200 NRWKALG 206 >gi|170758360|ref|YP_001787672.1| putative exonuclease [Clostridium botulinum A3 str. Loch Maree] gi|169405349|gb|ACA53760.1| putative exonuclease [Clostridium botulinum A3 str. Loch Maree] Length = 200 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 15/177 (8%) Query: 7 MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-S 56 M I+FD+E + + II+IGA++L + T TF + P N + Sbjct: 1 MNYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALIKPEIYSNLN 57 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAELQRIN 114 P L +T + L F ++ +F +F N+ ++ + Sbjct: 58 PFVKNLTNLTMDSLNKANPFREVYKDFLEFLNKDKNILCIWGMTDMKELFRNIVYYELDT 117 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + + +P S N S + H A D+ ++V+ Sbjct: 118 ESMPKEYINVQAYTGKYLNYPKSINVGLSNAVELFHITKNNDFHNAFNDAFYTAEVF 174 >gi|170727178|ref|YP_001761204.1| exonuclease RNase T and DNA polymerase III [Shewanella woodyi ATCC 51908] gi|169812525|gb|ACA87109.1| Exonuclease RNase T and DNA polymerase III [Shewanella woodyi ATCC 51908] Length = 226 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 1/171 (0%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+E TGLD++ D+I+ IG V + ++ + G + Sbjct: 45 AIDLEMTGLDAQFDQILSIGIVPIEKGRLILSKAEHKLVKIEGSVGQSATIHGILDHHLN 104 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 P + + A + F ++ ++ + I+ + Sbjct: 105 SAVSPEEAMTWFLERCQGQMLVAHHSPLDLAFLQKGLSTHFRQRVTLMAIDTLAIEKRRL 164 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ L R + + H AL+D+ ++ + + Q Sbjct: 165 MRQHEVLKEGALRLGASRARYGLPVYAAHNALIDAIACGELLLAQISAIGQ 215 >gi|70726060|ref|YP_252974.1| hypothetical protein SH1059 [Staphylococcus haemolyticus JCSC1435] gi|68446784|dbj|BAE04368.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 219 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 9/178 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D ET + K I +G V++++ +F + P S +++HGIT E Sbjct: 41 FIALDFET--ANGKRTSICSVGMVKVVNNEIV-ESFYTLVNPFD-YFSQTNIEVHGITPE 96 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D PSF +F F ++ +AHNA FD+ ++ L+++N + Sbjct: 97 DVIDAPSFEYVFPYMMQFIDK--LPVVAHNAAFDMNVLHQSLKQLNIETPSMIYFCSYQL 154 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 R + H AL D+ + + +++ + + Sbjct: 155 AKRTIDAYRYGL---KHLMKHYKLDFHGHHDALNDAKACAMITFRLLKHYDNLQSMLQ 209 >gi|89073343|ref|ZP_01159867.1| ribonuclease T [Photobacterium sp. SKA34] gi|89050830|gb|EAR56304.1| ribonuclease T [Photobacterium sp. SKA34] Length = 221 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 72/202 (35%), Gaps = 14/202 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L + K T + P G EAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVSPFEGAILHKEALDFNG 79 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + A +AHNA FD F+ A +R Sbjct: 80 IRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHSFVMAASERAKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + A + L C+ I +R H AL D+ ++++ +++ Sbjct: 140 KRNPFHPFATFDTAALSGLAFGQTVLAKACQTANIPFDNREAHSALYDTERTAELFCEIV 199 Query: 176 VGGSQINFGFKTNEDRFFKEEK 197 ++ T + Sbjct: 200 NKWKKLGGWPLTAPQTDESDNN 221 >gi|227432020|ref|ZP_03914039.1| DNA-directed DNA polymerase III [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352218|gb|EEJ42425.1| DNA-directed DNA polymerase III [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 177 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 5/165 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + + + I V + D ++ F + P S +HG+ Sbjct: 1 MNFVAMDFET--ANREKHSAVSIALVIVRDNQVVDK-FYSLIKPET-TFSSYNTAIHGLH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P F + F +N +AHNA FD + LQ + D + Sbjct: 57 RQDVADAPKF-PEVWQTISPFFTENKLVVAHNASFDNSILKGTLQYYDIDEPHYLLLDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + + LN++ GIT+ H + +Y Sbjct: 116 QTSRKLFPNFENHKLNTVAGNLGITLDHHHNALDDAVAAANILIY 160 >gi|221316927|ref|YP_002533071.1| bacteriophage 186 Orf81-like protein [Bacillus cereus Q1] gi|221243259|gb|ACM15967.1| bacteriophage 186 Orf81-like protein [Bacillus cereus Q1] Length = 288 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 67/179 (37%), Gaps = 11/179 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I KNK I+ D ETTGL I+EI A++L + F+ P ++ K Sbjct: 120 IEKNKDNYIILDTETTGLG-LGHEIVEIAAIDLYGNTL----LNTFVTP-TIPIPADSTK 173 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGITD+ +KD PS+ + + + E+ I L Sbjct: 174 IHGITDDMVKDAPSWEETYMKLLTISQGKTILIYNAAFDIPKISYTCEVHNIAPKKLKSE 233 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I++ + + G SHR+ + +L +++ ++ +Q Sbjct: 234 CIMELYAEYIDSQYWVPLSEAA-----GTITSHRAINDCKSVLIVLENIWNEIQHTLNQ 287 >gi|197261475|ref|YP_002154290.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage LMA2] gi|197244565|emb|CAR31299.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage LMA2] Length = 184 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 62/175 (35%), Gaps = 10/175 (5%) Query: 7 MRKIVFDIETTGLDS-------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M V+D ETTGL K RIIE V + F+C G Sbjct: 1 MIFAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGEKILDEV--EFICNPGIVIEEII 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+ G+ +E L PSF + DF + IAHN FD + +L R + Sbjct: 59 TKITGLKNEDLIKHPSFLDQRQKVRDF-FSRADANIAHNLPFDKFMLTCDLARGKFGLDE 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + P + + + KH AL D LL +V +M Sbjct: 118 VNFPSLDICTVEESAPLFGHRMRLQHLYEHYCGPYVQKHRALDDVRLLHEVCKRM 172 >gi|90022074|ref|YP_527901.1| ribonuclease T [Saccharophagus degradans 2-40] gi|89951674|gb|ABD81689.1| RNAse T [Saccharophagus degradans 2-40] Length = 231 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP---NGRKNSPEALKL 62 ++ D+ET G +S D ++EI AV L D + TF + P + S Sbjct: 26 VIVDVETGGFNSHTDALLEIAAVTLRMDEDGVLHRHETFDFHVDPFEGANIEQSALDFTG 85 Query: 63 HGITDEFLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + + P + A +AHNA FD+GF+NA R + Sbjct: 86 IDLDSDDRCAVPEDIAINEIFRSVRKAVKENGCNRAVMVAHNAHFDLGFVNAASNRCDVK 145 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L C+ I S+R H A D+ +D++ ++ Sbjct: 146 RNPFHPFSCFDTATLSGLAFGHTVLARACQLAKIEFSNREAHSAAYDAEKTADLFCTIVN 205 Query: 177 GGSQIN 182 + Sbjct: 206 RWKDLG 211 >gi|254286611|ref|ZP_04961567.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae AM-19226] gi|150423369|gb|EDN15314.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae AM-19226] Length = 236 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 54/184 (29%), Gaps = 16/184 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-----------NGRKNSP 57 + D ETTGL+++ D I+ IG V N+ + P +G +S Sbjct: 48 VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQARYWLVKPSQPLEEGSIVFHGITHSE 107 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + + I + + I+ N + + Sbjct: 108 LQHAQAPEQVLKELLETLYGKIVVVHFRHIEREFLRQISLNIWDEAIEFPVLDTLEIERQ 167 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L + I RR PS R R + S H AL D+ ++++ Sbjct: 168 LLDKQRSLWQRITRRPLPSIRLGQ----SRMRYHLPPYSPHHALTDAIATAELFQAQCAH 223 Query: 178 GSQI 181 Sbjct: 224 HLPP 227 >gi|38234148|ref|NP_939915.1| putative DNA polymerase III epsilon subunit [Corynebacterium diphtheriae NCTC 13129] gi|38200410|emb|CAE50098.1| Putative DNA polymerase III epsilon subunit [Corynebacterium diphtheriae] Length = 448 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 9/182 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEALKLHGIT 66 + D+ETT +S I +IGA ++ D T + P G + +HGIT Sbjct: 105 FVAVDVETT--NSDWGSICQIGAAKVRDGHVV-ETKEWLCTPPGDLNSFDEANIAIHGIT 161 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + PSF+ + +F D + AHNA+FD+ Q + + Sbjct: 162 ADMVATAPSFAECYDQFAD--FAGDLPLAAHNAQFDMTAFLRATQAADIRLRTTNFGCSL 219 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + P + + L ++ + + R+ H A D+ + + I + + F Sbjct: 220 AAARAAHLPIANHKLPTVSQHLHVE--LRNHHNACADAEACAGILIALTQRLNTEITDFT 277 Query: 187 TN 188 + Sbjct: 278 SA 279 >gi|325103944|ref|YP_004273598.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM 12145] gi|324972792|gb|ADY51776.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM 12145] Length = 315 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 68/184 (36%), Gaps = 7/184 (3%) Query: 2 IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ N R + F D+E TG++ DRI+EI +++ + P E Sbjct: 1 MKLNLKRPLAFFDLEATGVNLGIDRIVEISILKINVDGSEEVKTHR-INP-TIPIPYEVS 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGI D+ ++++P+F + E DF + + N + L+ LD Sbjct: 59 IIHGIYDKDIENEPTFKDLAQEIADFIGDADLAGYNSNKFDIPMLMEEFLKAGVNFDLDN 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +D +I + ++ + H A D+ +V + + Sbjct: 119 RHFVDVQNIFHQ----MEQRTLKAAYKFYCDKEIVNAHSAEADTRATYEVLLAQLKKYEG 174 Query: 181 INFG 184 ++ Sbjct: 175 HDWE 178 >gi|307565507|ref|ZP_07627990.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii CRIS 21A-A] gi|307345787|gb|EFN91141.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii CRIS 21A-A] Length = 183 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 9/170 (5%) Query: 5 NKMRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N + I D ET T +K I E G + T + P + S +++H Sbjct: 2 NNINFIAIDFETAT---AKRSSICEAGICVVKGGKVV-ETKSWLVRPEDNRYSYWNIQIH 57 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + P+F ++ E + + +AHNA FD+ I LQ + D Sbjct: 58 GIRPQDTAYAPTFPKVWEEITTYLRD-CPVLVAHNAAFDMSCIRHTLQLHHLPCPDIDYY 116 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + +IS+ + H A D+ + + ++++ Sbjct: 117 CSLRAARHIYDFGCNTLD---YLCDHFSISYGTHHRAGDDAEMCARLFLQ 163 >gi|307328999|ref|ZP_07608167.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] gi|306885361|gb|EFN16379.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] Length = 240 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 FD+ETTG D + RI+ VE+ D R + P Sbjct: 11 FDLETTGTDPRTSRIVTAAVVEVRDGEPIGRR-EWLADPQ 49 >gi|262165240|ref|ZP_06032977.1| ribonuclease T [Vibrio mimicus VM223] gi|262024956|gb|EEY43624.1| ribonuclease T [Vibrio mimicus VM223] Length = 224 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L + + T + P G AL+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGNLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD F+ A +R Sbjct: 80 IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 199 Query: 176 VGGSQIN 182 + Sbjct: 200 NQWKALG 206 >gi|188589093|ref|YP_001920974.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum E3 str. Alaska E43] gi|188499374|gb|ACD52510.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum E3 str. Alaska E43] Length = 243 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 72/229 (31%), Gaps = 16/229 (6%) Query: 7 MRKIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KN 55 M IV+D+E + + +I+IGAV+L + TF + P + Sbjct: 1 MNYIVYDLE---FNHQYSKDDKASNITFEVIQIGAVKLNSNLEVVSTFNRLIKPTVHTEI 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 P L IT E + + FS ++ +F F + + Sbjct: 58 HPFIKDLTQITTEMVNSEKYFSDVYDDFIKFIGNKEFTVCIWGTSDIKELLKNVKFHNLE 117 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L + L+ K + + H A D++ + ++ K Sbjct: 118 EIYDLRKYIDVQNLASKYIKTQKGTKVGLKAAIEFFNLPIEKEFHDAFNDAYYTAQIFKK 177 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222 + + + R + + K + +K ++++EE Sbjct: 178 LYTSKVKSSTYNNPYSKRISESKPKVDTKGLFRQFEKMYSKKLSEEEKK 226 >gi|149190366|ref|ZP_01868638.1| ribonuclease T [Vibrio shilonii AK1] gi|148835745|gb|EDL52710.1| ribonuclease T [Vibrio shilonii AK1] Length = 241 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 73/198 (36%), Gaps = 14/198 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + P G EAL+ G Sbjct: 44 VVVDVETAGFNAKTDALLEICAITLTMDDQGNLQPASVLHFHIEPFEGANLEKEALEFTG 103 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + + A +AHNA FD F++A +R Sbjct: 104 IRDPFSPLRGAVSEQEALKEIYKVIRKEQKQHDCSRAIMVAHNANFDHSFVSAANERAKL 163 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ +++ Sbjct: 164 KRVPFHPFATFDTATLSGLAYGQTVLAKACKAAGMEFDNREAHSALYDTQKTAELFCRIV 223 Query: 176 VGGSQINFGFKTNEDRFF 193 + +E Sbjct: 224 NKWKALGGWPIVDEQAQE 241 >gi|21672469|ref|NP_660536.1| ribonuclease T [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009131|sp|Q8K9V5|RNT_BUCAP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|21623085|gb|AAM67747.1| ribonuclease T [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 219 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIET G + K D ++EI + L + P G + +A+ + Sbjct: 20 VVIDIETAGFNPKTDAVLEIALITLKMDKLGWLHKEDILHFHIKPFKGSIINSDAIAFNK 79 Query: 65 ITDEFLKD--------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I S + +AHNA FD F+ A +QR+ Sbjct: 80 IDPFNPLRGAISETLAIESILEKVNYGIKIQGCTRGIVVAHNAHFDHNFLMAAIQRVKIK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L CK G++ + H AL DS ++++ K++ Sbjct: 140 NNPFHPFVTFDTAALSGLAVGQTVLAKACKAIGLSFDNNQAHSALYDSLQTANLFCKIVN 199 Query: 177 GGSQIN 182 + Sbjct: 200 RWKGLG 205 >gi|260582581|ref|ZP_05850371.1| ribonuclease T [Haemophilus influenzae NT127] gi|319775811|ref|YP_004138299.1| ribonuclease T [Haemophilus influenzae F3047] gi|329123653|ref|ZP_08252213.1| ribonuclease T [Haemophilus aegyptius ATCC 11116] gi|260094392|gb|EEW78290.1| ribonuclease T [Haemophilus influenzae NT127] gi|317450402|emb|CBY86618.1| ribonuclease T [Haemophilus influenzae F3047] gi|327469852|gb|EGF15317.1| ribonuclease T [Haemophilus aegyptius ATCC 11116] Length = 229 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G D+K D ++E+ A+ L Y ++ + P G +PE+LK +G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + Q + +AHNA FD F+ A +R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAERTGVK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L C+ I + H AL D+ + ++ M+ Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQAAKIPFDGKQAHSALYDTERTAKLFCYMVN 202 Query: 177 GGSQIN 182 + Sbjct: 203 HLKDLG 208 >gi|88797304|ref|ZP_01112894.1| putative DNA polymerase, exonuclease activity [Reinekea sp. MED297] gi|88780173|gb|EAR11358.1| putative DNA polymerase, exonuclease activity [Reinekea sp. MED297] Length = 192 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 70/178 (39%), Gaps = 7/178 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGI 65 R +V D+E TGL+++ D II G V + + + + P S A + Sbjct: 16 RVLVLDLEMTGLNAQEDSIISAGWVVIEQGRIELSLAGHQYFQPTAMMASDVSASAHIHM 75 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121 + L ++ + W+ H+A D+ F+ QR++ ++ + Sbjct: 76 ITDHLLEQQGQPLGHWLQRLNGDLLADRWVFHHAPIDMAFLKMFSQRLDIVLPSVTIEDT 135 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +++ + S + + C+ ++R H AL D+ +++Y+ +M Sbjct: 136 VLLEQKRFSDLTLESQQQLSLTACRARHRLPAYRQ-HHALSDALATAELYLALMTDSQ 192 >gi|87302291|ref|ZP_01085116.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH 5701] gi|87283216|gb|EAQ75172.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH 5701] Length = 297 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 14/27 (51%), Positives = 18/27 (66%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL 34 R ++ D ETTGLD + D IE+GAV Sbjct: 66 RLLILDTETTGLDPERDHCIEVGAVLF 92 >gi|147675730|ref|YP_001216478.1| ribonuclease T [Vibrio cholerae O395] gi|153216049|ref|ZP_01950254.1| ribonuclease T [Vibrio cholerae 1587] gi|153826220|ref|ZP_01978887.1| ribonuclease T [Vibrio cholerae MZO-2] gi|124114499|gb|EAY33319.1| ribonuclease T [Vibrio cholerae 1587] gi|146317613|gb|ABQ22152.1| ribonuclease T [Vibrio cholerae O395] gi|149740080|gb|EDM54249.1| ribonuclease T [Vibrio cholerae MZO-2] gi|227012823|gb|ACP09033.1| ribonuclease T [Vibrio cholerae O395] Length = 243 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L T + P G AL+ G Sbjct: 39 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD F+ A +R Sbjct: 99 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 159 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 218 Query: 176 VGGSQIN 182 + Sbjct: 219 NQWKALG 225 >gi|224372066|ref|YP_002606231.1| predicted type III DNA polymerase PolC [Desulfobacterium autotrophicum HRM2] gi|223694785|gb|ACN18067.1| predicted type III DNA polymerase PolC [Desulfobacterium autotrophicum HRM2] Length = 290 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 48/167 (28%), Gaps = 5/167 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D+ET + I +IG + R + + P P + +HGI Sbjct: 1 MEFVSIDVET--ANPDMASICQIGIACFNNGQL-EREWSSLVNP-RDYFDPINVSVHGIN 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + PSF I+ E + + + ++ + Sbjct: 57 ETSVSSAPSFEEIYHEIRSLLSGKICV-SHTHFDRISMDKAIRKHSLDPIDVVWLDSARI 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A + L ++CK G H + ++ Sbjct: 116 ARRAWEECAWKGYGLANVCKIIGFEFKHHDALEDAKACGAIVHAAVE 162 >gi|148827473|ref|YP_001292226.1| ribonuclease T [Haemophilus influenzae PittGG] gi|166228566|sp|A5UGD7|RNT_HAEIG RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|148718715|gb|ABQ99842.1| ribonuclease T [Haemophilus influenzae PittGG] Length = 229 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G D+K D ++E+ A+ L Y ++ + P G +PE+LK +G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + Q + +AHNA FD F+ A +R Sbjct: 83 IDIHNPLRGAVSELNAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L C+ I + H AL D+ + ++ M+ Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQAAKIPFDGKQAHSALYDTERTAKLFCYMVN 202 Query: 177 GGSQIN 182 + Sbjct: 203 HLKDLG 208 >gi|120555417|ref|YP_959768.1| ribonuclease T [Marinobacter aquaeolei VT8] gi|166228568|sp|A1U3L2|RNT_MARAV RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|120325266|gb|ABM19581.1| RNAse T [Marinobacter aquaeolei VT8] Length = 221 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++EI AV L + + T + P G AL G Sbjct: 21 VVVDVETAGFNPERDALLEIAAVMLTMDEDGWLRRGETHVQQIDPFEGANLEQSALDFTG 80 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + S + + + A + HNA FD F+ A R + Sbjct: 81 IDPWNPEREAVPEREGLSEIFSPIRKAVKEHDCKRAVLVGHNATFDHNFVFAAALRADIK 140 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L CK GI S++ H A D+ +D++ ++ Sbjct: 141 RNPFHPFSTFDTATLAGLAYGHTVLAQACKLAGIPFSNKEAHSAAYDAEKTADLFCGIVN 200 Query: 177 GGSQIN 182 ++ Sbjct: 201 RWRELG 206 >gi|309379715|emb|CBX21704.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 326 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + +L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPK-KPIPQFVAELTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + IAHN++FD F+ + S + + Sbjct: 76 DGMVVDAPVFAEIAGELFSVLKG--CVLIAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 132 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 183 >gi|262402358|ref|ZP_06078919.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586] gi|262351140|gb|EEZ00273.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586] Length = 233 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50 + D ETTGL+++ D I+ IG V + + P Sbjct: 45 VALDFETTGLNAQQDDILSIGLVPFNTQRIALKQARYWLVKP 86 >gi|220936287|ref|YP_002515186.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sp. HL-EbGR7] gi|219997597|gb|ACL74199.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sp. HL-EbGR7] Length = 240 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG+D++ D I+ IG V + + P R S ++K H IT Sbjct: 52 ALDLETTGMDAERDVIVSIGIVPFDLRRIRPAEGYYWVVKPP-RPLSEASIKFHRITHSE 110 Query: 70 LKDKP 74 + P Sbjct: 111 VAAAP 115 >gi|110805628|ref|YP_689148.1| ribonuclease T [Shigella flexneri 5 str. 8401] gi|123147001|sp|Q0T4C2|RNT_SHIF8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|110615176|gb|ABF03843.1| RNase T [Shigella flexneri 5 str. 8401] Length = 215 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 80 IDPNDPDRGAVSEYEALHEICKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L+ C+ G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|23012539|ref|ZP_00052599.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum magnetotacticum MS-1] Length = 218 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 26/196 (13%) Query: 8 RKIVFDIETTGLD----------SKNDR----IIEIGAVELL---DYSKTNRTFQVFLCP 50 R I D ETTG K R +IEIG +EL+ + KT +++Q + P Sbjct: 12 RIIAIDAETTGFQVPTPAEIRKMPKGLRLPGIVIEIGCLELVRSEEGWKTGKSWQRRIQP 71 Query: 51 NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 G S ++++HGI+ LK+ PSF I EF F +AH+A+ ++ F+N E Sbjct: 72 GG-PVSKASVEVHGISPAELKNAPSFRDILDEFEAFI--GQDVLLAHSAENEMAFLNFEY 128 Query: 111 QRINKDPLDPS-----RIIDTLSIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDS 164 R + D + T ++R+ P L+ LC R + HGALLD+ Sbjct: 129 ARAGRCGFDEMIFSVDDFVCTQDLSRQFFPGVPGSLDVLCDRLWVDRSDRFEHHGALLDA 188 Query: 165 HLLSDVYIKMMVGGSQ 180 L ++ ++KM G Q Sbjct: 189 ILTAEAFMKMAGGFVQ 204 >gi|229051643|ref|ZP_04195113.1| exonuclease [Bacillus cereus AH676] gi|228721754|gb|EEL73228.1| exonuclease [Bacillus cereus AH676] Length = 287 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 11/144 (7%) Query: 5 NKM-----RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 NKM + ++ D ETTGL + D+IIEI ++L + P EA Sbjct: 122 NKMFINKDQFVILDTETTGL-TLRDQIIEISVIDLAGKIL----LNSLVKP-TIIIPAEA 175 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGIT+E + D PS+ I+ E + + + + Sbjct: 176 TSIHGITNEMVHDAPSWIEIYKELCEVTAGKTLLIYNAEFDLGMIESTCITNNVEFKSFK 235 Query: 120 PSRIIDTLSIARRKHPSSRNDLNS 143 + I+ + + + Sbjct: 236 STCIMKMYADFIDSKRWISLNDAT 259 >gi|160931331|ref|ZP_02078731.1| hypothetical protein CLOLEP_00168 [Clostridium leptum DSM 753] gi|156869715|gb|EDO63087.1| hypothetical protein CLOLEP_00168 [Clostridium leptum DSM 753] Length = 172 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 45/129 (34%), Gaps = 10/129 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDE 68 ++ D ETT LD RIIEI + + T + P G EA +H I+ + Sbjct: 17 VILDTETTDLD---GRIIEISII----DAATGTVLMDQLINPQGAPICAEARTVHHISPD 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P+F+ + D + +A NA FD I AE D Sbjct: 70 DLATAPTFTQVRPRLEDVVAD--RVVMAWNAPFDRERIEAEYALAGLDAPAWPWCCLMRL 127 Query: 129 IARRKHPSS 137 A Sbjct: 128 EASVMGCQW 136 >gi|289664483|ref|ZP_06486064.1| exonuclease, RNase T and DNA polymerase III [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 322 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 67/220 (30%), Gaps = 15/220 (6%) Query: 10 IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D ETTGL+ D ++EI V +CP PEA +HGI+ + Sbjct: 51 IFVDTETTGLNQDGRDEVLEIAIVNADGTIL----LNTLVCPARNTAWPEAQAIHGISPQ 106 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + PS+S + + + + +NA FD F + + ++ Sbjct: 107 DVAGAPSWSGLLPKIASICAGKTVVF--YNAPFDTSFFPTRFFPNVECAMRSYSEVNPGH 164 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL-----LSDVYIKMMVGGSQINF 183 K S S G A L L Y + Sbjct: 165 SGWVK--LSDAASESGYTSTGAFHRALEDALACRHIWLFGIPILKKTYPPLTNPRITAEL 222 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + R + + + + + TK++ +E Sbjct: 223 ALEAGGHRPLVFKALFIDQLRFVAINDVCVLW-TKDDREE 261 >gi|323143472|ref|ZP_08078155.1| putative DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT 12066] gi|322416757|gb|EFY07408.1| putative DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT 12066] Length = 321 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 75/221 (33%), Gaps = 12/221 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK---TNRTFQVFLCPNGRKNSPEALKLH 63 + D ETTG+D ++IIE+G V + D +R + F P G+K E +L Sbjct: 79 VFLDTETTGMDCNQEKIIELGMVRVTYSFDRKLMLSIDRIYDEFEDP-GKKIPLEIQQLT 137 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 ITDE + ++ +AHNAKFD F + ++ S Sbjct: 138 HITDEMVAG----HRFDNDSVSQILAGRPLVVAHNAKFDRPFFDRRFPTLSDLSWACSLS 193 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 Y ++ L H+ + + ++ + + Sbjct: 194 GVNWDALGDNGRKLEFLCQVRGWFYDAHRAYDDCLALLWLMHIEPEAFEMLINSALRHEY 253 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI-TKEELDE 223 F ++K N K + + +++E+ + Sbjct: 254 KIYAVGSPFDIKDKLKALNYRFDPARKCWYINVQSEDEVKK 294 >gi|308050117|ref|YP_003913683.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica DSM 9799] gi|307632307|gb|ADN76609.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica DSM 9799] Length = 223 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFL 48 R+ M + D+E TGLD + D I+ I AV ++ +++ + Sbjct: 33 REQPM--LALDLELTGLDVRQDAILSIAAVPIIRGRLVLAQSWHQLV 77 >gi|327483724|gb|AEA78131.1| Ribonuclease T [Vibrio cholerae LMA3894-4] Length = 224 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L T + P G AL+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD F+ A +R Sbjct: 80 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGVEFDNREAHSALYDTQKTAELFCTIV 199 Query: 176 VGGSQIN 182 + Sbjct: 200 NQWKALG 206 >gi|304310986|ref|YP_003810584.1| hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1] gi|301796719|emb|CBL44931.1| Hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1] Length = 300 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 2/157 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ETTGL++ + I EIGAV+ + F++F P G +L GITDE Sbjct: 36 IAIDFETTGLEASSAAITEIGAVKFKISGEIVDQFEMFAYP-GTPIPVRIQELTGITDEM 94 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++ +F D+ + +IAHNA F+ F+ A ++ + P +S Sbjct: 95 VTGCEPPLFVWKKFLDW-ADGANTFIAHNAPFEARFVRALYEKEGEMPNIYFIDTLQISR 153 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 R SS + N + + G + A + Sbjct: 154 NRLPEESSYSLKNLVKFKEGEPHRALADAKACSTLYC 190 >gi|160891538|ref|ZP_02072541.1| hypothetical protein BACUNI_03990 [Bacteroides uniformis ATCC 8492] gi|317478357|ref|ZP_07937521.1| exonuclease [Bacteroides sp. 4_1_36] gi|156858945|gb|EDO52376.1| hypothetical protein BACUNI_03990 [Bacteroides uniformis ATCC 8492] gi|316905516|gb|EFV27306.1| exonuclease [Bacteroides sp. 4_1_36] Length = 163 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 8/167 (4%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+ D ET + + + +G V + D + + P + ++HG+ Sbjct: 1 MKDFAAIDFET--ANEQRTSVCSVGVVIVRDGEIV-DHYYSLIRPEPEYYTYWNTRVHGL 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII- 124 T +D P F ++ E +AHN FD + A + D D Sbjct: 58 TLADTQDAPIFPVVWQEIAPRIEG--LPLVAHNKAFDESCLKAVFRTYCMDYPDYEFYCT 115 Query: 125 -DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 A + P+ + ++C Y + H + A + + V Sbjct: 116 LQASRRAIKGLPNYQLHTVAVCCGYQLEHHHHALADAEACAWIAKQV 162 >gi|325956898|ref|YP_004292310.1| ATP-dependent DNA helicase [Lactobacillus acidophilus 30SC] gi|325333463|gb|ADZ07371.1| ATP-dependent DNA helicase [Lactobacillus acidophilus 30SC] gi|327183677|gb|AEA32124.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1118] Length = 926 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 9/212 (4%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + II+ G + + +T+ + P+ R+ + L GI++ Sbjct: 10 FAVVDLETTGTQRENGHHIIQFGCAIIKNLKVV-KTYSFMINPH-REIPQSVVNLTGISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIID 125 ++ + F + QN ++AHN FD+ F+N EL + D L ++ Sbjct: 68 GDVQKQKDFDFYAPKIVKIL--QNTVFVAHNVDFDLPFLNYELTQHGYDALTNKAIDTVE 125 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG- 184 IA PS + + H++ A + LL + IK + Q Sbjct: 126 LAKIAFPTLPSYKLSDLTAQLEIKHLNPHKADSDAYGTAILLIKI-IKQLETLPQATLNT 184 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + ++ + I+ R + Sbjct: 185 LSSLAHGLIRDTSWVITTIADSLRQEKRPLPA 216 >gi|314976530|gb|EFT20625.1| exonuclease [Propionibacterium acnes HL045PA1] Length = 169 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 8/128 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETT LD RIIEI ++ + + P G EA +H I+ + Sbjct: 17 VILDTETTDLD---GRIIEISIIDAATGTVLMN---QLINPQGAPIYAEARTVHHISPDD 70 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L P+F+ + D + +A NA FD G I AE D Sbjct: 71 LATAPTFTQVRPRLEDVVAD--RVVMAWNAPFDQGRIEAEYGLAGLDAPAWPWCCLMRLE 128 Query: 130 ARRKHPSS 137 A Sbjct: 129 AAMMGCRW 136 >gi|163814599|ref|ZP_02205988.1| hypothetical protein COPEUT_00750 [Coprococcus eutactus ATCC 27759] gi|158450234|gb|EDP27229.1| hypothetical protein COPEUT_00750 [Coprococcus eutactus ATCC 27759] Length = 227 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 10/175 (5%) Query: 7 MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 MR + D E +DS+ IIEIGAV+L D +F+ ++ P + Sbjct: 9 MRYVFVDFEMNLIDSEHKQEKKICKSEIIEIGAVKLDDEYNEIDSFKSYVKPAYGNMASR 68 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFF--NEQNAEWIAHNAKFDVGFINAELQRINKD 116 +KL GITDE L+ PS+ F ++ + W ++ + G + + Sbjct: 69 IIKLTGITDEMLETAPSYEDAVGRFIEWCADADVIYAWSENDLRQLRGETRLKQYTHPEL 128 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ++ D R +SR S Y ++H AL D+ ++V+ Sbjct: 129 ERVFAKWQDFQKEYARMIGTSRRISLSDAVFYLGENFQGAEHDALWDARNTAEVF 183 >gi|325568813|ref|ZP_08145106.1| exonuclease [Enterococcus casseliflavus ATCC 12755] gi|325157851|gb|EGC70007.1| exonuclease [Enterococcus casseliflavus ATCC 12755] Length = 177 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 68/178 (38%), Gaps = 10/178 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + + + V + D + + P + +++HGI Sbjct: 1 MNFIAMDFET--ANYQKHSACSLALVMVQDSKIVGE-YYTLIQPETEFF-WKNIQIHGIR 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +++ P F ++ + ++ + +AHNA FD G + L + + Sbjct: 57 PEDVQEAPKFPDVWKQIQQYYQLNSLI-VAHNAGFDTGVLAGCLDYYGLSQPNYLSLCTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + + + + LN++C++ I + H AL DS + + ++ + Sbjct: 116 RTSRKLYPEFTNHKLNTVCEQLQIP--LLNHHDALEDSRACAQI---LLRQEEEFGID 168 >gi|294140465|ref|YP_003556443.1| exonuclease [Shewanella violacea DSS12] gi|293326934|dbj|BAJ01665.1| exonuclease [Shewanella violacea DSS12] Length = 232 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNG 52 R N M D+E TGLD +D+I+ IG + + +R + +G Sbjct: 44 RANLM---ALDLEMTGLDPNHDQILSIGIIPIEAGMLKLDRAQHKLIRVHG 91 >gi|114562633|ref|YP_750146.1| ribonuclease T [Shewanella frigidimarina NCIMB 400] gi|122300177|sp|Q084K7|RNT_SHEFN RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|114333926|gb|ABI71308.1| RNAse T [Shewanella frigidimarina NCIMB 400] Length = 221 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL---DYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++ D ++EI L D +RT + P G P AL +G Sbjct: 20 VVIDVETAGFNANTDALLEIAVSLLKMNSDGVIVLDRTLHFNIEPFEGANLEPAALAFNG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + +AHNA FD+GF+N ++R Sbjct: 80 IDPTNPLRGAVDEKVAFLEIFKEVKKAQKAADCHRSIIVAHNAAFDLGFVNKAIERNGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L CK GI ++ H AL D+ ++++ ++ Sbjct: 140 RSPFHPFASFDTATLAGLAIGHTVLAKACKMAGIDFDNKEAHSALYDTERTAELFCLIVN 199 Query: 177 GGSQIN 182 + Sbjct: 200 RWKALG 205 >gi|315038483|ref|YP_004032051.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1112] gi|312276616|gb|ADQ59256.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1112] Length = 926 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 9/212 (4%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + II+ G + + +T+ + P+ R+ + L GI++ Sbjct: 10 FAVVDLETTGTQRENGHHIIQFGCAIIKNLKVV-KTYSFMINPH-REIPQSVVNLTGISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIID 125 ++ + F + QN ++AHN FD+ F+N EL + D L ++ Sbjct: 68 GDVQKQKDFDFYAPKIVKIL--QNTVFVAHNVDFDLPFLNYELTQHGYDALTNKAIDTVE 125 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG- 184 IA PS + + H++ A + LL + IK + Q Sbjct: 126 LAKIAFPTLPSYKLSDLTAQLEIKHLNPHKADSDAYGTAILLIKI-IKQLETLPQATLNT 184 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + ++ + I+ R + Sbjct: 185 LSSLAHGLIRDTSWVITTIADSLRQEKRPLPA 216 >gi|260881564|ref|ZP_05404714.2| helicase, UvrD/REP/exonuclease family protein [Mitsuokella multacida DSM 20544] gi|260848768|gb|EEX68775.1| helicase, UvrD/REP/exonuclease family protein [Mitsuokella multacida DSM 20544] Length = 874 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 4/164 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+E TG+D D II+I + L K F+ L + S Sbjct: 512 NIVVFDVEATGVDPTRDEIIQIAGLRLGRDGKAKAEFKRLLR---ARRSVGDSYRVHKIS 568 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + + A + HN +D+ + +EL R+ PL R DTL Sbjct: 569 DAILQQEGEEPEAVLREFCAFAEGAVIVGHNVTYDLSILGSELARLGLPPLSYQRYYDTL 628 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I RR +P+ N + + H A+ D +++ Sbjct: 629 DIFRRFYPNLPNHKLEYLGEFCKVSHRST-HDAMDDVCATAEIL 671 >gi|225012865|ref|ZP_03703298.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium MS024-2A] gi|225002987|gb|EEG40964.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium MS024-2A] Length = 458 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 4/116 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + + K F + P KL GI + Sbjct: 2 YAILDIETTGGKYDEEGITEIAIYKY-NGQKVVDQFSSLINPQKEIQP-FVEKLTGINSK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 L+ P F + + ++ +AHNA FD + E +R+ S Sbjct: 60 MLRSAPKFYEVAKRIVE--LTEDCILVAHNASFDYRILQTEFRRLGFPFERKSICT 113 >gi|92115957|ref|YP_575686.1| exonuclease [Nitrobacter hamburgensis X14] gi|91798851|gb|ABE61226.1| Exonuclease [Nitrobacter hamburgensis X14] Length = 334 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D+ET ++ I +IG VE++ ++ + + P+ +HGIT + Sbjct: 6 FIVLDVET--ANADYASICQIGLVEVVAGEVVSQE-AILVNPDD-YFDGFNTSIHGITAD 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F + + + I H+ FD I+ +R + + +D Sbjct: 62 HVCGAPLFHEVHAALSQRLSGS---IIVHHGPFDRVSISRACERCGIESF-DVQWLDNQR 117 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + RR +L H AL D+ ++++ + + Sbjct: 118 VVRRVWEQFSKSGYALKSLAAFFGIEFQHHDALQDAIATNEIFRRALNESGTT 170 >gi|224476576|ref|YP_002634182.1| hypothetical protein Sca_1089 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421183|emb|CAL27997.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 895 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 2/166 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + ++ + + P L I D+ Sbjct: 6 YAVVDLETTGNQKDYDDIIQIGITFVKGFEIVG-SYHSLIK-TDLEIPPFIQALTSIEDQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ + E ++ + + I P ++ Sbjct: 64 MLTQAPYFNEVAEEIYELMKDSVFVAHNVAFDLTFLKKAFKKSNITYQPRKVIDTVELFK 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IA S + + + +HR+ A + L+ + + Sbjct: 124 IAFPTDKSYQLSELAEYHDIPLENAHRADEDAATTAKLMIKAFNVL 169 >gi|262276726|ref|ZP_06054519.1| exodeoxyribonuclease I [alpha proteobacterium HIMB114] gi|262223829|gb|EEY74288.1| exodeoxyribonuclease I [alpha proteobacterium HIMB114] Length = 473 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 2/92 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCPNGRKNSPEALKLHG 64 M + +D ETTG S D+II++GA+ + D F+ L P L Sbjct: 1 MNYVFYDFETTGRSSTWDQIIQVGAILVNDTFDILDRFEARCSLKPGTVPEPGALLVNKT 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96 D K S + + F + + Sbjct: 61 TPDMLKKTNLSHFGMVQMMKETFEKWSPAMFI 92 >gi|260772908|ref|ZP_05881824.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] gi|260612047|gb|EEX37250.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] Length = 238 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGLD D II IG V L R + P +K ++ +HGIT Sbjct: 48 FVAMDFETTGLDENKDEIITIGLVPFTLQRVYLKRAQHWIVRP-RQKLDEGSVIIHGITH 106 Query: 68 EFLKDKP 74 + P Sbjct: 107 SDIMHAP 113 >gi|77360378|ref|YP_339953.1| DNA polymerase III subunit epsilon [Pseudoalteromonas haloplanktis TAC125] gi|76875289|emb|CAI86510.1| putative DNA polymerase III, epsilon subunit [Pseudoalteromonas haloplanktis TAC125] Length = 236 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGLDS+ D I+ +G V + + P R E++ +HGIT Sbjct: 47 FVAMDFETTGLDSEADDIVSVGLVPFNLQRIYCKHSRHWVVQP-RRNLHEESIIIHGITH 105 Query: 68 EFLKDKPSFSS 78 + D P F+ Sbjct: 106 SEVDDAPDFNR 116 >gi|28898888|ref|NP_798493.1| ribonuclease T [Vibrio parahaemolyticus RIMD 2210633] gi|260879442|ref|ZP_05891797.1| ribonuclease T [Vibrio parahaemolyticus AN-5034] gi|29611937|sp|P46232|RNT_VIBPA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|28807107|dbj|BAC60377.1| ribonuclease T [Vibrio parahaemolyticus RIMD 2210633] gi|308093530|gb|EFO43225.1| ribonuclease T [Vibrio parahaemolyticus AN-5034] gi|328474555|gb|EGF45360.1| ribonuclease T [Vibrio parahaemolyticus 10329] Length = 214 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 76/195 (38%), Gaps = 14/195 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L + T + P G EAL+ +G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLRMDEEGVLHPASTIHFHIEPFEGANLEKEALEFNG 79 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + + A +AHNA FD+ F+NA +R Sbjct: 80 IRDPFSPLRGAVSEQEALKEIYKLIRKEQKASDCSRAIMVAHNAAFDLSFVNAANERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCGIV 199 Query: 176 VGGSQINFGFKTNED 190 + NE+ Sbjct: 200 NKWKALGGWPLVNEE 214 >gi|315221792|ref|ZP_07863704.1| DnaQ family exonuclease/DinG family helicase [Streptococcus anginosus F0211] gi|315189025|gb|EFU22728.1| DnaQ family exonuclease/DinG family helicase [Streptococcus anginosus F0211] Length = 819 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 84/185 (45%), Gaps = 9/185 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M ++ + + V D+E T S N +II++G V + + +T++ + P+ K P Sbjct: 1 MTQEKR-KYAVVDLEATSASS-NAKIIQVGIVLIENGQIV-KTYETDVNPH-EKLDPHIR 56 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+TD+ L+ P FS + E ++ + A ++AHN KFD + + Sbjct: 57 QLTGLTDKRLRKAPDFSQVAREIYELIED--AIFVAHNVKFDANLLA--EALFWEGFELV 112 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +DT+ +A+ P+ + I + H AL D+ + +++K+ + Sbjct: 113 TPRVDTVELAQVFFPTFEKYNL-GILCEQLDIPLKHAHTALADASATATLFLKIQEKIQK 171 Query: 181 INFGF 185 + Sbjct: 172 LPKEL 176 >gi|312172307|emb|CBX80564.1| ribonuclease T [Erwinia amylovora ATCC BAA-2158] Length = 224 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D+K + ++EI AV L + + + T + P G EAL +G Sbjct: 22 VVIDVETAGFDAKTNALLEIAAVTLKMDSEGWLEKDETLHFNVEPFPGSVMLAEALAFNG 81 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A +AHNA FD+ F+NA +R + Sbjct: 82 IDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 141 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L C G++ H AL D+ +D++ +++ Sbjct: 142 RNPFHPFVTFDTAALSGLVLGQTVLAKACNAAGMSFDSAQAHSALYDTLQTADLFCELVN 201 Query: 177 GGSQIN 182 ++ Sbjct: 202 RWKRLG 207 >gi|254293981|ref|YP_003060004.1| exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC 49814] gi|254042512|gb|ACT59307.1| Exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC 49814] Length = 298 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 65/229 (28%), Gaps = 11/229 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL---DYSKT--NRTFQVFLCPNGRKNSPEALKLHGIT 66 D ETTGLD + +IEI V + + F P S E KL GIT Sbjct: 45 IDTETTGLDYREAELIEIALVPFEYSTEGKLVTFGKALDQFQQPKS-PISEEITKLTGIT 103 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIID 125 +E + + + + A A + F + + +D + Sbjct: 104 NEMVAGQKIDIPAVEQLIKESDLIIAHNAAFDRPFAERLTPAFKAKPWACSLVDIDWKEE 163 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + + + R I K A ++ + + Sbjct: 164 GYESPKLSFLAMEHGFYYKAHRADIDCWATIKLLAQRLKTSGDRAMAHLLTSAREERWRI 223 Query: 186 KTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQT 230 F K++ + K + I ++ + + +++ Sbjct: 224 WATNTNFAKKDILKNRGYRWESGENGKPKSWYADIAAKDKEAELEFLKS 272 >gi|319955723|ref|YP_004166990.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM 14237] gi|319424383|gb|ADV51492.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM 14237] Length = 456 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 4/116 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + + ++ F + P + L GIT++ Sbjct: 2 YAILDIETTGGKYNEEGITEIAIHKFDGHQVVDQ-FISLVNPEKEIQP-FVVNLTGITNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 L P F + + + IAHNA+FD + E +R+ + + Sbjct: 60 MLVTAPKFYEVAKRIVE--ITEGTVLIAHNAQFDYRILRTEFRRLGFNFERKTICT 113 >gi|306829204|ref|ZP_07462394.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis ATCC 6249] gi|304428290|gb|EFM31380.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis ATCC 6249] Length = 830 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 89/233 (38%), Gaps = 15/233 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ R +V D+E T SK +II++G V + + ++ + + P+ Sbjct: 1 MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIVDQ-YATDVNPH-EPLDSHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+TD+ L P FS + + ++ + ++AHN +FD + L + P Sbjct: 58 ELTGLTDQRLAAAPEFSQVAGKIFELVKD--GVFVAHNVQFDANLLAEFLFFEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +L LC+ GI H AL D+ +++ + M Q Sbjct: 116 RVDT-VELAQVLYPQFEKYNLGILCQELGIE--LEQAHTALSDAQATAELLLYM----RQ 168 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR--ITKEEL-DEHDKTIQT 230 F + + S L ++ + ++ EL + H ++ Sbjct: 169 KLFELPKGLLESLLDLADNLLYESYLVIEEVYQQQFLLSSSELIELHGLFLRK 221 >gi|218148597|ref|YP_002364365.1| hypothetical protein PP141_gp57 [Pseudomonas phage 14-1] gi|218059793|emb|CAU13913.1| hypothetical protein [Pseudomonas phage 14-1] gi|294663797|gb|ADF29351.1| putative DNA polymerase III epsilon subunit [Pseudomonas phage JG024] Length = 184 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 62/175 (35%), Gaps = 10/175 (5%) Query: 7 MRKIVFDIETTGLDS-------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M V+D ETTGL K RIIE V + F+C G Sbjct: 1 MIFAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGEKILDEV--EFICNPGIVIEEII 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+ G+ +E L PSF + DF + IAHN FD + +L R + Sbjct: 59 TKITGLKNEDLIKHPSFLDQRQKVRDF-FARADANIAHNLPFDKFMLTCDLARGKLGLEE 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + P + + + KH AL D LL +V +M Sbjct: 118 VNFPSLDICTVEESAPLFGHRMRLQHLYEHYCGPYVQKHRALDDVRLLHEVCKRM 172 >gi|53803894|ref|YP_114507.1| ribonuclease T [Methylococcus capsulatus str. Bath] gi|53757655|gb|AAU91946.1| ribonuclease T [Methylococcus capsulatus str. Bath] Length = 209 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 63/186 (33%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET+G D + ++EI AV L RT Q+ + P G K AL + Sbjct: 18 VVVDVETSGFDPHANALLEIAAVHLDMDESGNLHPVRTHQLHVKPFEGAKLDEAALNFNK 77 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + A + HN FD+ F+NA R Sbjct: 78 INPFHPFRFAVDEREALSQIFDAVQQSIRQHGCTRAILVGHNPAFDIAFLNAASSRARIK 137 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L + G++ H+ H A D++ + ++ ++ Sbjct: 138 KNPFHPFSTFDTATLGGLAYGQTVLARAAQAAGLSWDHQEAHSAAYDANQTARLFCTIVN 197 Query: 177 GGSQIN 182 ++ Sbjct: 198 RWKRMT 203 >gi|301633239|gb|ADK86793.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma pneumoniae FH] Length = 1443 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 80/201 (39%), Gaps = 11/201 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL + D +IE +++ + R Q FL +G ++ IT Sbjct: 408 FVIFDIETTGLHGRYDSVIEFAGIKVKHNREVERM-QFFLKIDG-PLPAAVTEITKITQA 465 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D + + + + +AHN + +IDTL+ Sbjct: 466 QLEDGMEQQAGLEKLRAWLDG--CVMVAHNGLSFDLPFLQTQFEKYNIAPLTNPLIDTLA 523 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY------IKMMVGGSQI 181 ++ +P + + L+++C + H A D+ L V+ +++M + Sbjct: 524 LSWALNPGFASHTLSNICAKLKFDFDDERLHRADYDTQALKKVFDYFKEQVELMGITNLE 583 Query: 182 NFGFKTNEDRFFKEEKKTVPN 202 + N+ F+ K+T N Sbjct: 584 QLDQELNQQCHFELLKRTFTN 604 >gi|300716497|ref|YP_003741300.1| ribonuclease T [Erwinia billingiae Eb661] gi|299062333|emb|CAX59450.1| Ribonuclease T [Erwinia billingiae Eb661] Length = 215 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D+K + ++EI AV L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFDAKTNALLEIAAVTLKMDENGWLEKDETLHFHVEPFEGSILQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A +AHNA FD+ F NA R Sbjct: 80 IDPSNPLRGAVSEYDALHAIFKLVRKGIKDHGCNRAIMVAHNATFDLNFTNAAADRAGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L C G+ H AL D+ +D++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLVLGQTVLAKACAAAGMAFDSSQAHSALYDTVQTADLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|148378258|ref|YP_001252799.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A str. ATCC 3502] gi|148287742|emb|CAL81808.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502] Length = 309 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 64/212 (30%), Gaps = 11/212 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D+ F I+ + +F N IAHNA FD+ + + L+ N I Sbjct: 58 PHMVQDELEFDKIWGKIKGYF--NNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTM 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG------SQ 180 LN++ G H + + K + Sbjct: 116 KLSKNFYSNIDNARLNTVNNFLGYKFKHHDALADAMACSNILINISKELNSKDINEISKL 175 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 I + K + R P Sbjct: 176 IGVTLGYVNEDGCKPSSIKGRILKRSNRQAPR 207 >gi|189463384|ref|ZP_03012169.1| hypothetical protein BACCOP_04103 [Bacteroides coprocola DSM 17136] gi|189429813|gb|EDU98797.1| hypothetical protein BACCOP_04103 [Bacteroides coprocola DSM 17136] Length = 164 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 6/167 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D ET + + + +G V + + T + + P S ++HG+T + Sbjct: 4 FAAIDFET--ANKERSSVCSVGIVIVRNGEITEK-LYRLIRPYPNYYSYWNTQVHGLTFQ 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P+F ++ E +AHN+ FD G + A Q N + D + + Sbjct: 61 DTACAPTFPEVWKEIDPIIAG--LPLVAHNSPFDEGCLKAAFQAYNMEYPDYTFHCTCRA 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R S N H AL D+ + + I ++ Sbjct: 119 SRRTFGKSLPNHQLQTVALK-CGYDLSHHHHALCDAEACAQIAINIL 164 >gi|158335553|ref|YP_001516725.1| exonuclease [Acaryochloris marina MBIC11017] gi|158305794|gb|ABW27411.1| exonuclease [Acaryochloris marina MBIC11017] Length = 168 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 10/166 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ET D + D IG + + + +R+ + P +K + +HGIT Sbjct: 9 NFVAIDFET--ADYQRDSACAIGVIRVENDQIVDRS-HFLIRPPRQKF--QFTYIHGITW 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +K P+F+ ++ F + AHNA FD +NA Q + P + T+ Sbjct: 64 SDVKHHPTFAELWPNLQPKFAGSDFV-AAHNANFDRSVLNACCQ-AAELDPMPLPFLCTV 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +AR L ++C+ H AL D+ + + I Sbjct: 122 KLAREVWNIRPTKLPNVCEFL---DIPLQHHQALSDAEACAKIVIA 164 >gi|222624763|gb|EEE58895.1| hypothetical protein OsJ_10524 [Oryza sativa Japonica Group] Length = 901 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 2/65 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTG + +RIIE +L+ N T Q + P + + Sbjct: 703 VFDIETTGFSRRYERIIEFAVRDLMGGK--NSTIQTLINPEREIKNAYVHGISSSMVCKP 760 Query: 71 KDKPS 75 Sbjct: 761 DIPRF 765 >gi|254458194|ref|ZP_05071620.1| exonuclease [Campylobacterales bacterium GD 1] gi|207085030|gb|EDZ62316.1| exonuclease [Campylobacterales bacterium GD 1] Length = 272 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 68/197 (34%), Gaps = 7/197 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIET G +IIEIGAV++ D ++ F+ + R+ + ++ GI+ E Sbjct: 71 IVDIETNGSKIDKHQIIEIGAVKVRDGVIIDK-FESLV--YCREINKHITEITGISVEDT 127 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K+ P+ + EF F + ++ + + + Sbjct: 128 KNAPNLKKVLYEFKSFLGNAIFVAHDVKFDYKFISLSMQKIGLEPLLNRSICSLALAERT 187 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 + + + LN + + H A+ D +++ + ++ KT ED Sbjct: 188 IESYRYALSYLNDSLH----LNPNATHHRAMSDVITTYGLFMLSLHNLKSLDKDVKTAED 243 Query: 191 RFFKEEKKTVPNISLLK 207 ++ Sbjct: 244 LIKFSKEAKRFKRPKFD 260 >gi|26991449|ref|NP_746874.1| DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440] gi|24986524|gb|AAN70338.1|AE016675_8 exonuclease [Pseudomonas putida KT2440] Length = 203 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 64/174 (36%), Gaps = 7/174 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R E+ V L R +Q + G L GIT Sbjct: 3 RIAVIDFETTGISPGTGCRATEVAVVMLEGGRIVER-YQSLMN-AGVPVPAFVAGLTGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ P + +E +F +AHNA FD F + + + Sbjct: 61 TAMLRSAPPVEKVMNEVAEFVGG--TPLLAHNAAFDQKFWD--YELGRIGRSRSQPFACS 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L ++RR P++ N R+ + H A+ D+ + +++ + Q Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMADAEMAANLLQYLAGVLRQ 170 >gi|197261383|ref|YP_002154199.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage LBL3] gi|197244473|emb|CAR31208.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage LBL3] Length = 184 Score = 52.2 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 63/175 (36%), Gaps = 10/175 (5%) Query: 7 MRKIVFDIETTGLDS-------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M V+D ETTGL K RIIE V + F+C G Sbjct: 1 MIFAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGEKILDEV--EFICNPGIVIEEII 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+ G+ +E L PSF + DF + IAHN FD + +L R + Sbjct: 59 TKITGLKNEDLIKHPSFLDQRQKVRDF-FARADANIAHNLPFDKFMLTCDLARGKLGLEE 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + P + + + KH AL D LL++V +M Sbjct: 118 VNFPSLDICTVEESAPLFGHRMRLQHLYEHYCGPYVQKHRALDDVRLLNEVCKRM 172 >gi|153933783|ref|YP_001382659.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str. ATCC 19397] gi|153935123|ref|YP_001386211.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str. Hall] gi|152929827|gb|ABS35327.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A str. ATCC 19397] gi|152931037|gb|ABS36536.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A str. Hall] Length = 309 Score = 52.2 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 64/212 (30%), Gaps = 11/212 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFET--ANEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D+ F I+ + +F N IAHNA FD+ + + L+ N I Sbjct: 58 PHMVQDELEFDKIWGKIKGYF--NNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTM 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG------SQ 180 LN++ G + + + K + Sbjct: 116 KLSKNFYSNIDNARLNTVNNFLGYKFKYHDALADAMACSNILINISKELNSKDINEISKL 175 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 I + K + R P Sbjct: 176 IGVTLGYVNEDGCKPSSIKGRILKRSNRQAPR 207 >gi|67459827|ref|YP_247450.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2] gi|67005360|gb|AAY62285.1| DNA polymerase III, epsilon subunit-like protein [Rickettsia felis URRWXCal2] Length = 377 Score = 52.2 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 66/229 (28%), Gaps = 11/229 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK--TNRTFQVFLCPNGRKNSPEALKLHG 64 I D ETTGL + D+I+E+G V+ D + P + +L G Sbjct: 126 IFLDTETTGLSHEKDKILELGMVKFEYTEDGRIYQIVDELNQYQDPQ-QPIPLRITELTG 184 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITDE ++ K ++F + + A + + F + Sbjct: 185 ITDEMVQGKAIDQEAVTQFLENVDIIIAHNASFDRPFFDKMFLHLPPKAWGCSRADIDWK 244 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK-MMVGGSQINF 183 + + + +T H + +K ++V ++ F Sbjct: 245 AEKIESHKLEYLAYKYNFFYEGHRAVTDCLAGLHLLAQTLPIAKQPVLKQLLVNCNKTRF 304 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRD----KPLFTRITKEELDEHDKTI 228 + ++ K + ++ L+ + Sbjct: 305 KIWAKNAPYDTKDLLKARGYRWSTHPQDNYKAWIIEVFEDNLEIELAFL 353 >gi|86133336|ref|ZP_01051918.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] gi|85820199|gb|EAQ41346.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] Length = 359 Score = 52.2 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 72/196 (36%), Gaps = 9/196 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + D + F + P + ++L GI ++ Sbjct: 2 YAILDIETTGGKFNEEGITEIAIYKY-DGQEIVDQFISLINPE-KPIQEFVVRLTGINNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTL 127 LK+ P F + + +N +AHN+ FD + E R+ D + ++ Sbjct: 60 MLKNAPKFYEVAKRIVE--ITKNCIIVAHNSAFDYRILRTEFDRLGFDFERNTLCTVELS 117 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 PS + + I +H A D+ ++ ++ + Sbjct: 118 QALILDQPSYSLGKLTKS----LGIPISDRHRATGDALATVKLFKLLLEKDHKKTIIQNA 173 Query: 188 NEDRFFKEEKKTVPNI 203 + + EK+ + N+ Sbjct: 174 IKYFDKRLEKQKLKNL 189 >gi|323340217|ref|ZP_08080481.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus ruminis ATCC 25644] gi|323092408|gb|EFZ35016.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus ruminis ATCC 25644] Length = 180 Score = 52.2 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 68/177 (38%), Gaps = 8/177 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + FD ET ++K + + + + + + P + +HGI Sbjct: 1 MNFVAFDFET--ANAKRNSACSLALTVVQNNQIVDE-LYSLINPKTN-FDYRNIAIHGIK 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P F S + F + +AHNA FD + L++ +IDT Sbjct: 57 PQMVADSPDF-SELWPHIESFFTPESLVVAHNAPFDCSVLTRTLEKYGIAAP-HFNVIDT 114 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + +++ + N L++LC+ + I H AL DS + + + + Sbjct: 115 VKTSKQFYDFQDNKLDTLCQ--NLDIDLAHHHNALDDSQACAKILLSQLQNFGSDTL 169 >gi|315224650|ref|ZP_07866473.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga ochracea F0287] gi|314945278|gb|EFS97304.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga ochracea F0287] Length = 1485 Score = 52.2 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 67/200 (33%), Gaps = 19/200 (9%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + D R ++I ++ + P+G + Sbjct: 2 YLIFDTETTGLPRRWDAPLSDSDNWPRAVQIAWQLHDEWGALIEHQDFLIKPDGFDVPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----- 113 A K+HGI+ + + + + + ++ + + N FD+ + AE R Sbjct: 62 AEKVHGISTQLAEAQGMPIAEVFKAFNEALSKAQYVVGQNIGFDINIMGAEFYRYGVESP 121 Query: 114 --NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSD 169 +D R L +L + + H A D + Sbjct: 122 LTQMPVIDTCTEATANLCQIAGGKGGRYKLPTLTELHSFLFGIPFAEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNE 189 + +++ G G +++ Sbjct: 182 CFFELIRRGEGFQEGTFSSD 201 >gi|251780665|ref|ZP_04823585.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084980|gb|EES50870.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 243 Score = 52.2 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 74/229 (32%), Gaps = 16/229 (6%) Query: 7 MRKIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KN 55 M IV+D+E + + +I+IGAV+L + TF + P + Sbjct: 1 MNYIVYDLE---FNHQYSKDDKASNITFEVIQIGAVKLNSNLEVVSTFNRLIKPTVHTEI 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 P L IT E + + FS ++ +F +F + + Sbjct: 58 HPFIKDLTQITTEMVNSEKYFSDVYDDFIEFIGNKEFTVCIWGTSDIKELLKNVKFHNLE 117 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 D L + L+ K + + H A D+H + ++ K Sbjct: 118 EIDDLRKYIDVQNLASKYIKTQKGTKVGLKTAIEFFNLPIEKEFHDAFNDAHYTAQIFKK 177 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222 + + + R + + K + +K ++++EE Sbjct: 178 LYTSKVKSSTYNNPYSKRISEPKSKVDTKGLFRQFEKMYSKKLSEEEKK 226 >gi|283798273|ref|ZP_06347426.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1] gi|291074053|gb|EFE11417.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1] Length = 244 Score = 52.2 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 8/173 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLC-PNGRKNSPEALKLHG 64 + FD ETTGL++++ +IIE+ A+ + + + VF+ P G + + ++L G Sbjct: 15 VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQKIVELTG 74 Query: 65 ITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 ITDE + + + + F + +AHNA+FD+ F L+R + + Sbjct: 75 ITDEQLENEGITETEAAARFTELIGGGRVLLVAHNAQFDLLFTAEMLRRHGNGGPEVLKA 134 Query: 124 IDTLS--IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D L + + + L + Y + ++ H A+ D L +V M Sbjct: 135 ADYLDSLTVYKDRRAYPHKLANAILTYKLEDKVQNSHRAIDDVAALFEVCKAM 187 >gi|148380237|ref|YP_001254778.1| exonuclease family protein [Clostridium botulinum A str. ATCC 3502] gi|153931193|ref|YP_001384542.1| exonuclease family protein [Clostridium botulinum A str. ATCC 19397] gi|153935233|ref|YP_001388058.1| exonuclease family protein [Clostridium botulinum A str. Hall] gi|148289721|emb|CAL83826.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502] gi|152927237|gb|ABS32737.1| exonuclease family protein [Clostridium botulinum A str. ATCC 19397] gi|152931147|gb|ABS36646.1| exonuclease family protein [Clostridium botulinum A str. Hall] Length = 253 Score = 52.2 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 70/207 (33%), Gaps = 15/207 (7%) Query: 7 MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNS 56 M I+FD+E + + II+IGA++L + T TF + P + Sbjct: 1 MSYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSDLN 57 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAELQRIN 114 P L +T + L SF ++ +F +F N+ + ++ Q Sbjct: 58 PFVKNLTNLTMDSLNKAKSFREVYKDFLEFLNKDRNIFCIWGMTDMKELFRNIVYYQLDT 117 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + + +P S N S + H A D+ ++V+ K+ Sbjct: 118 ESMPKEYINVQAYTGKYLNYPKSINVGLSNAVELFHITKNNDFHNAFNDAFYTAEVFKKI 177 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP 201 + TN ++ + Sbjct: 178 YSEKIKTKIYKPTNNSTTYRTKNTKTK 204 >gi|313108556|ref|ZP_07794557.1| putative nuclease [Pseudomonas aeruginosa 39016] gi|310881059|gb|EFQ39653.1| putative nuclease [Pseudomonas aeruginosa 39016] Length = 208 Score = 52.2 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 60/168 (35%), Gaps = 3/168 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D+ETT LD + I+ IGAV + ++++ P E++++H + Sbjct: 33 ISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPP-SLDAESIRIHKLRRA 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIIDTL 127 L+ + + F ++ + + +L Sbjct: 92 DLEGQLQLEQALRQLLAFIGDRPLLGYYLSFDVAVLNRHLRQLFDRQLHNPSIEISSLYH 151 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R P + DL + + +H AL D+ ++ ++++++ Sbjct: 152 RKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLL 199 >gi|182417499|ref|ZP_02948826.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum 5521] gi|237666097|ref|ZP_04526085.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378668|gb|EDT76195.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum 5521] gi|237659044|gb|EEP56596.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum E4 str. BoNT E BL5262] Length = 270 Score = 52.2 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 66/200 (33%), Gaps = 3/200 (1%) Query: 25 RIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83 II+IGAV+L D + TF + P+ ++ P +L GI E + + F S++ EF Sbjct: 54 EIIQIGAVKLNDNFEIIATFNRLIKPSLYKEIHPFIEELTGINTEMVATEKHFPSVYKEF 113 Query: 84 WDFFNEQNAEWIAHNAKFDVG--FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDL 141 F + + + I L+ P Sbjct: 114 LKFIGSNDFVMCVWGIDDIKQLIRNIHYHSLNIHNNIKKYIDIQNLASKEFNTPKGNRLG 173 Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP 201 + H AL D+ V+ K+ + + N +R K Sbjct: 174 LKTAVEFWNIPIQNDFHNALNDAVYTCHVFKKVFNKNLKPSIYSNPNYNRIPTNSLKVDT 233 Query: 202 NISLLKRDKPLFTRITKEEL 221 + + +K ++TKEE Sbjct: 234 EKLISQFEKMFGRKMTKEEK 253 >gi|90408436|ref|ZP_01216597.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3] gi|90310470|gb|EAS38594.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3] Length = 237 Score = 52.2 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITD 67 +V D ETTGL +K + II IG VE+ + + +++ + + N A+ H + Sbjct: 50 FLVVDFETTGLIAKYNDIISIGWVEISNLQVVCASQEHIYINNDKKINHETAVINHIVPQ 109 Query: 68 E 68 Sbjct: 110 M 110 >gi|90407122|ref|ZP_01215310.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3] gi|90311698|gb|EAS39795.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3] Length = 238 Score = 52.2 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR 53 + D ETTGLDSK + II IG V + + ++ P Sbjct: 48 FVALDFETTGLDSKQNSIISIGLVPFDLQRIYCRKAKKWYINPEDN 93 >gi|229004425|ref|ZP_04162172.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides Rock1-4] gi|228756825|gb|EEM06123.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides Rock1-4] Length = 44 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 8 RKIVFDIETTGLDSK--NDRIIEIGAVELLDYSK 39 R +V D+ETTG K DRI +I AV + D Sbjct: 4 RYVVVDLETTGNSWKDGKDRITQIAAVVVEDGEI 37 >gi|118577408|ref|YP_899648.1| exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus DSM 2379] gi|118504913|gb|ABL01395.1| Exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus DSM 2379] Length = 304 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 73/234 (31%), Gaps = 17/234 (7%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNR------TFQVFLCPNGRKNSPEALKLHGI 65 D ETTG + +D IIE+G V + T T+ F P R PE + GI Sbjct: 50 IDTETTGFNFSDDVIIELGIVAFEYDAMTGEISRIVDTYSGFEDP-CRPLDPEVTAVTGI 108 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ----RINKDPLDPS 121 TD+ L + + + + + F + + Sbjct: 109 TDDMLAGQSLDDAAVGKIVSQASLCFCHNCKFDRSFLERRFPEFEKLPFACTMSQIDWKN 168 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++ + ++ + +++ L S L V+ ++ + Sbjct: 169 ELVTSRTLEYLLYKCGACFIDAHRALNDAEGLLGLLLENLPVSKLS--VFKTVLENARKP 226 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231 +F + ++ + K +T +++++LD + + Sbjct: 227 SFKIMAYNSAYSAKDSLRDRKYHWEPGGDGKIKTWWTVVSEKDLDNEITFLNNI 280 >gi|13507773|ref|NP_109722.1| DNA polymerase III PolC [Mycoplasma pneumoniae M129] gi|2494192|sp|P75080|DPO3_MYCPN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|1673778|gb|AAB95768.1| DNA polymerase III (dnaE) alpha chain [Mycoplasma pneumoniae M129] Length = 1443 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 80/201 (39%), Gaps = 11/201 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL + D +IE +++ + R Q FL +G ++ IT Sbjct: 408 FVIFDIETTGLHGRYDSVIEFAGIKVKHNREVERM-QFFLKIDG-PLPAAVTEITKITQA 465 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D + + + + +AHN + +IDTL+ Sbjct: 466 QLEDGMEQQAGLEKLRAWLDG--CVMVAHNGLSFDLPFLQTQFEKYNIAPLTNPLIDTLA 523 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY------IKMMVGGSQI 181 ++ +P + + L+++C + H A D+ L V+ +++M + Sbjct: 524 LSWALNPGFASHTLSNICAKLKFDFDDERLHRADYDTQALKKVFDYFKEQVELMGITNLE 583 Query: 182 NFGFKTNEDRFFKEEKKTVPN 202 + N+ F+ K+T N Sbjct: 584 QLDQELNQQCHFELLKRTFTN 604 >gi|90579159|ref|ZP_01234969.1| ribonuclease T [Vibrio angustum S14] gi|90439992|gb|EAS65173.1| ribonuclease T [Vibrio angustum S14] Length = 221 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 71/202 (35%), Gaps = 14/202 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L + K T + P G EAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVSPFEGAILHKEALDFNG 79 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + A +AHNA FD F+ A +R Sbjct: 80 IRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHSFVMAASERAKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + A + L C+ I +R H AL D+ ++++ +++ Sbjct: 140 KRNPFHPFATFDTAALSGLAFGQTVLAKACQTANIPFDNREAHSALYDTERTAELFCEIV 199 Query: 176 VGGSQINFGFKTNEDRFFKEEK 197 ++ + Sbjct: 200 NKWKKLGGWPLMAPQTDESDNN 221 >gi|213963506|ref|ZP_03391759.1| putative DNA polymerase III, alpha subunit subfamily [Capnocytophaga sputigena Capno] gi|213953786|gb|EEB65115.1| putative DNA polymerase III, alpha subunit subfamily [Capnocytophaga sputigena Capno] Length = 1485 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 67/200 (33%), Gaps = 19/200 (9%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + D R ++I ++ + P+G + Sbjct: 2 YLIFDTETTGLPRRWDAPLTDSDNWPRAVQIAWQLHDEWGALIEHQDFLIKPDGFDVPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----- 113 A K+HGI+ + + + + + ++ + + N FD+ + AE R Sbjct: 62 AEKVHGISTQLAETQGVPIAEVFKAFNEALSKAKYVVGQNIGFDINIMGAEFHRYGVESP 121 Query: 114 --NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSD 169 +D R L +L + + H A D + Sbjct: 122 LTQMPVIDTCTETTANLCQIAGGKGGRYKLPTLTELHSFLFGVPFAEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNE 189 + +++ G G +++ Sbjct: 182 CFFELIRRGEGFQEGTFSSD 201 >gi|239927654|ref|ZP_04684607.1| exonuclease RNase T and DNA polymerase III [Streptomyces ghanaensis ATCC 14672] gi|291435992|ref|ZP_06575382.1| exonuclease RNase T and DNA polymerase III [Streptomyces ghanaensis ATCC 14672] gi|291338887|gb|EFE65843.1| exonuclease RNase T and DNA polymerase III [Streptomyces ghanaensis ATCC 14672] Length = 204 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 2/115 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D ETTGLD EI + L +T++ +L P+ P+AL+++ + Sbjct: 15 FVDTETTGLDPFQHDAWEIAVI-LRKPGETDQESVFYLEPDLINADPKALEINRYHERVK 73 Query: 71 KDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + ++ D + I N FD I R P Sbjct: 74 TEDWTWGKPQDVARDLYRLLDGTVLIGSNPPFDADMIANIFGRYYWHPKPWHYRT 128 >gi|153940748|ref|YP_001391589.1| exonuclease family protein [Clostridium botulinum F str. Langeland] gi|152936644|gb|ABS42142.1| exonuclease family protein [Clostridium botulinum F str. Langeland] gi|295319617|gb|ADF99994.1| exonuclease family protein [Clostridium botulinum F str. 230613] Length = 253 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 70/207 (33%), Gaps = 15/207 (7%) Query: 7 MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNS 56 M I+FD+E + + II+IGA++L + T TF + P + Sbjct: 1 MNYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSDLN 57 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAELQRIN 114 P L +T + L SF ++ +F F N+ + ++ Q Sbjct: 58 PFVKNLTNLTMDSLNKAKSFREVYKDFLKFLNKDRNIFCIWGMTDMKELFRNIVYYQLDT 117 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + + +P S N S + + H A D+ ++V+ K+ Sbjct: 118 ESMPKEYINVQAYTGKYLNYPKSINVGLSNAVQLFHITKNNDFHNAFNDAFYTAEVFKKI 177 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP 201 + TN ++ + Sbjct: 178 YSEKMRTKIYKPTNNSTTYRTKNTKTK 204 >gi|497127|gb|AAA21572.1| RNase T [Vibrio parahaemolyticus] Length = 214 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 14/195 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L + T + P G EAL+ +G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLRMDEEGVLHPASTIHFHIEPFEGANLEKEALEFNG 79 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + + A +AHNA FD+ F+NA +R Sbjct: 80 IRDPFSPLRGAISEQEALKEIYKLIRKEQKASDCSRAIMVAHNAAFDLSFVNAANERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCGIV 199 Query: 176 VGGSQINFGFKTNED 190 + +E+ Sbjct: 200 NKWKALGGWPLVDEE 214 >gi|332090790|gb|EGI95882.1| ribonuclease T [Shigella boydii 5216-82] Length = 215 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L+ C+ G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTTALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|315180012|gb|ADT86926.1| DNA polymerase III subunit epsilon [Vibrio furnissii NCTC 11218] Length = 238 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL D II IG V L+ NR + P +K ++ +HGIT Sbjct: 48 FVAMDFETTGLSVDKDEIITIGLVPFTLERIYLNRAKHWTVRP-RQKLDEHSIVIHGITH 106 Query: 68 EFLKDKPSFSSIFSEFWDFF 87 + D P S IF E + Sbjct: 107 NDIMDAPDLSDIFEEVLEHL 126 >gi|110833585|ref|YP_692444.1| ribonuclease T [Alcanivorax borkumensis SK2] gi|110646696|emb|CAL16172.1| Ribonuclease T [Alcanivorax borkumensis SK2] Length = 228 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 15/187 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCP------NGRKNSPE 58 +V D+ET G +S+ D ++EI AV + + + R Q + P Sbjct: 24 VVIDVETGGFNSQTDALLEIAAVLIEMDAQGNLRPSTRI-QFHVDPFPGANLEQAALDFT 82 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINK 115 + + + ++ + +F + + HN+ FD GF+NA R + Sbjct: 83 GIDPNNPLRGAVPEETALKGVFDPVRKAIKQHACSRAVLVGHNSFFDQGFLNAATDRTDI 142 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + L C+ GI S R H AL D+ ++++ M+ Sbjct: 143 KRNPFHPFSSFDTATLAGLVYGQTVLAKACEAAGIRFSQREAHSALYDATRTAELFCSMV 202 Query: 176 VGGSQIN 182 + Sbjct: 203 NRFKTLG 209 >gi|90410853|ref|ZP_01218868.1| ribonuclease T [Photobacterium profundum 3TCK] gi|90328484|gb|EAS44782.1| ribonuclease T [Photobacterium profundum 3TCK] Length = 223 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +SK D ++EI AV L + K T + P G EAL+ +G Sbjct: 20 VVIDVETAGFNSKTDALLEICAVTLQMDEDGWLKPASTIHFHVAPFEGAVLHKEALEFNG 79 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD F+ +R Sbjct: 80 IRDPFSPLRGAVSEETALKEIYKQIRKEQKAADCSRAIMVAHNANFDHSFVMEASERARL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + A + L CK G+ ++ H AL D+ ++++ +++ Sbjct: 140 KRNPFHPFATFDTAALSGLAFGQTVLAKACKTAGVAFDNKEAHSALYDTERTAELFCEIV 199 Query: 176 VGGSQIN 182 ++ Sbjct: 200 NKWKKLG 206 >gi|163849777|ref|YP_001637820.1| exonuclease RNase T and DNA polymerase III [Methylobacterium extorquens PA1] gi|163661382|gb|ABY28749.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium extorquens PA1] Length = 297 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 72/211 (34%), Gaps = 8/211 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ET + + D +G + R + P + SP +++HGI Sbjct: 1 MKVVAIDFET--ANERRDSACAVGLAWIEGGRVVRRE-SRLIRPPQLRFSPGNIRVHGIL 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D P+F + +EF + +AHNA FD+G + A L + D + Sbjct: 58 PADVRDAPTFPEVIAEFLPDLSG--GLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 R + + L K G H A D+ +++ + + + Sbjct: 116 QIARRVFPDPAGHGL---AKVAGRLGIRFEHHDAGEDAFACAEIALAALHETGAADIADL 172 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 T P + + R + Sbjct: 173 ARGLGLTPIRALTTPRRDMTRSTSAKALRAS 203 >gi|295108760|emb|CBL22713.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Ruminococcus obeum A2-162] Length = 319 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 66/210 (31%), Gaps = 12/210 (5%) Query: 7 MRKIVFDIE---TTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M IVFD+E + G ++ IIEIGAV++ + + FQ + P + Sbjct: 1 MNYIVFDLEWNQSPGGKKYSNSRLPFEIIEIGAVKMNEQREVLDVFQRLVKPQVYNWIHD 60 Query: 59 ALKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD 116 ++ + + L D F EF D+ E+ N ++ + K Sbjct: 61 SIHEVIHVDYKDLADGVPFPQAVEEFLDWCGEERVFCTWGNQDVMELQRNMKYYGLLKKI 120 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKM 174 + + H AL D+ +++ + M Sbjct: 121 KGPVTYYDAQKIYGICYKEDPCRRSLEYAIDKMRLPKAQEFHRALTDAKYTGEIFKRLDM 180 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204 V + + N +E + PN Sbjct: 181 QVVLANPSIDVYQNPKTRKEEIYLSYPNYD 210 >gi|308049989|ref|YP_003913555.1| RNAse T [Ferrimonas balearica DSM 9799] gi|307632179|gb|ADN76481.1| RNAse T [Ferrimonas balearica DSM 9799] Length = 222 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 78/199 (39%), Gaps = 14/199 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L + + ++T + P G P AL+ +G Sbjct: 20 VVIDVETAGFNAQTDALLEIAAVTLKMDEQGWLQPDQTIHFHVAPFEGANLEPAALEFNG 79 Query: 65 ITDEFLKDKP---------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 ITD F + + + + +AHNA FD F+NA +R Sbjct: 80 ITDPFSALRGAVSEREALSEIFKLVRKGQKAAGCNRSIIVAHNATFDQSFVNAASERTKM 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + A + L C+ GI ++ H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFGTFDTAALSGLALGQTVLAKACRAAGIPFDNKEAHSALYDTQRTAELFCYIV 199 Query: 176 VGGSQINFGFKTNEDRFFK 194 + + K Sbjct: 200 NRWKALGGWPMVPGEEAGK 218 >gi|38232702|ref|NP_938469.1| hypothetical protein DIP0068 [Corynebacterium diphtheriae NCTC 13129] gi|38198960|emb|CAE48575.1| Hypothetical protein DIP0068 [Corynebacterium diphtheriae] Length = 102 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 21/43 (48%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 V D TTG + + D IIE+ AV Y K ++ L P+ Sbjct: 31 FAVIDTGTTGFNKRYDHIIELAAVRADAYFKPVDSWHALLNPD 73 >gi|332829852|gb|EGK02494.1| hypothetical protein HMPREF9455_01451 [Dysgonomonas gadei ATCC BAA-286] Length = 164 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 7/167 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D ET + + + +G V + + +R F + P +HG+T E Sbjct: 5 FAAIDFET--ANEQMSSVCSVGIVIVRNGIICDR-FYSLIQPEPNYYIYGNSNVHGLTYE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + FS ++ E +AHN FD + A + D D + Sbjct: 62 DTINADVFSKVWMLIEPLIGE--LPLVAHNKGFDETCLKAVFKTYRMDYPDYRFYCTLAA 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R+ S + L+++ + G + H AL D+ +++ ++++ Sbjct: 120 SRRQLRHLSNHQLHTVAEDCG--YILTNHHNALADAEACAEIALQLL 164 >gi|296119586|ref|ZP_06838144.1| exonuclease [Corynebacterium ammoniagenes DSM 20306] gi|295967469|gb|EFG80736.1| exonuclease [Corynebacterium ammoniagenes DSM 20306] Length = 212 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 56/187 (29%), Gaps = 12/187 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYS--KTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + D+ETTGL K +I+ IG V + + + + V + G A H Sbjct: 29 FLAVDMETTGLKPKQHQIVSIGWVPIKNNRVQLSGAQY-VLIK--GVDVGESATIHHLRD 85 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + K I D + +AH A + F + +++ + Sbjct: 86 SDLEKGMELEEGIDKLTAD---LRGKAMLAHFAPIETSFYSHACKKLWGKEPHLEVVDTF 142 Query: 127 LSIARRKHPSSRNDLNS----LCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R S R + + H AL D+ +++Y+ M Sbjct: 143 ALERRHMERMSTYPRGEDLRLSRVRARYGLPNYPSHNALTDAIACAELYLAMAAHRPPTK 202 Query: 183 FGFKTNE 189 Sbjct: 203 LKDMQKN 209 >gi|292488168|ref|YP_003531050.1| ribonuclease T [Erwinia amylovora CFBP1430] gi|291553597|emb|CBA20642.1| ribonuclease T [Erwinia amylovora CFBP1430] Length = 226 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNG---------RKNS 56 +V D+ET G D+K + ++EI AV L + + + T + P N Sbjct: 22 VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDETLHFNVEPFPGSVLLAEALAFNG 81 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + + + + + A +AHNA FD+ F+NA +R + Sbjct: 82 IDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 141 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L C G++ H AL D+ +D++ +++ Sbjct: 142 RNPFHPFVTFDTAALSGLVLGQTVLAKACNAAGMSFDSAQAHSALYDTLQTADLFCELVN 201 Query: 177 GGSQIN 182 ++ Sbjct: 202 RWKRLG 207 >gi|292899378|ref|YP_003538747.1| ribonuclease T [Erwinia amylovora ATCC 49946] gi|291199226|emb|CBJ46341.1| ribonuclease T [Erwinia amylovora ATCC 49946] Length = 224 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNG---------RKNS 56 +V D+ET G D+K + ++EI AV L + + + T + P N Sbjct: 20 VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDETLHFNVEPFPGSVLLAEALAFNG 79 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + + + + + A +AHNA FD+ F+NA +R + Sbjct: 80 IDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L C G++ H AL D+ +D++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLVLGQTVLAKACNAAGMSFDSAQAHSALYDTLQTADLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|34498206|ref|NP_902421.1| exonuclease [Chromobacterium violaceum ATCC 12472] gi|34104060|gb|AAQ60420.1| probable exonuclease [Chromobacterium violaceum ATCC 12472] Length = 207 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 7/105 (6%) Query: 7 MRK--IVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 MR+ V D ET G D R EIG + D +R F + G P +L Sbjct: 1 MRQRVAVIDFETNGATPGGDCRATEIGVAMVEDGRVVDR-FHSLMN-AGVWVPPMIERLT 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 GI++ LKD P + + F + A AHNA FD F + Sbjct: 59 GISNAMLKDAPPAERVMRDAAHFVGD--APLAAHNAGFDRKFWDY 101 >gi|310767562|gb|ADP12512.1| ribonuclease T [Erwinia sp. Ejp617] Length = 219 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 65/186 (34%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNR--TFQVFLCP--NGRKNSPEALKLH 63 +V D+ET G D+K + ++EI AV ++ + T + P Sbjct: 20 VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLGKDDTLHFHVEPFAGSVLLPEALTFNG 79 Query: 64 GITDEF-------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + + + + A +AHNA FD+ F+NA +R + Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L C G+ H AL D+ +D++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLAKACHAAGMAFDSAQAHSALYDTLQTADLFCELVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|156974738|ref|YP_001445645.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116] gi|156526332|gb|ABU71418.1| hypothetical protein VIBHAR_02456 [Vibrio harveyi ATCC BAA-1116] Length = 249 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + D ETTGL+++ D I+ IG V L + + + + PN N + Sbjct: 59 FVSVDFETTGLNAEQDAILTIGLVPFTLGRVQCSGSRHWVVNPNRELNEESVVIHG 114 >gi|94501813|ref|ZP_01308325.1| DNA polymerase III subunit epsilon [Oceanobacter sp. RED65] gi|94426034|gb|EAT11030.1| DNA polymerase III subunit epsilon [Oceanobacter sp. RED65] Length = 238 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 2/85 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D ETTGL+ +D II IG V N + PN S E++ +H I Sbjct: 48 ALDFETTGLNPNDDSIISIGMVPFSLQRIYCNNAVYWVVRPNT-PLSEESILIHHIKHSE 106 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEW 94 ++ P + + +E Sbjct: 107 IQSAPRIERLLEPLLEKLSEHILVV 131 >gi|259502638|ref|ZP_05745540.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259169453|gb|EEW53948.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 224 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 + D+ET+GL+ +II IGAV+ + T TF + Sbjct: 55 FVSLDLETSGLNPTTAQIISIGAVKRIAGHTT--TFYRLVK 93 >gi|37679366|ref|NP_933975.1| ribonuclease T [Vibrio vulnificus YJ016] gi|54036328|sp|Q7MM91|RNT_VIBVY RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|37198109|dbj|BAC93946.1| ribonuclease T [Vibrio vulnificus YJ016] Length = 217 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 73/197 (37%), Gaps = 14/197 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L T + P G EAL+ +G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKEALEFNG 79 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD+ F+NA +R Sbjct: 80 IRDPFSPLRGAVTEQEALKEIYKLIRREQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKTAGMEFDNREAHSALYDTEKTAELFCGIV 199 Query: 176 VGGSQINFGFKTNEDRF 192 + ++ Sbjct: 200 NKWKALGGWPLIEDENE 216 >gi|323163498|gb|EFZ49324.1| ribonuclease T [Escherichia coli E128010] Length = 215 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R++ Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERVSLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L+ C+ G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|322805638|emb|CBZ03203.1| ATP-dependent DNA helicase UvrD/PcrA,clostridial paralog [Clostridium botulinum H04402 065] Length = 549 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 25/40 (62%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF 47 +VFD+E+TG++ D I++I +++ + + +FQ F Sbjct: 494 NVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRF 533 >gi|327313911|ref|YP_004329348.1| exonuclease [Prevotella denticola F0289] gi|326945021|gb|AEA20906.1| exonuclease [Prevotella denticola F0289] Length = 163 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 7/168 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 D ET + + + +G V + + TF + P ++HG+T Sbjct: 3 NFAAIDFET--ANFERSSVCSVGVVIVRGG-EVADTFYSLVHPEPNYYQWRCTQVHGLTR 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E D P FS +++ +AHNA FD G + A Q D D + Sbjct: 60 EDTDDAPVFSKVWARIEPLIEG--LPLVAHNAPFDKGCLRACFQTYRMDYPDYEFLDTLR 117 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + R S + L+++ G H AL D+ + + +++ Sbjct: 118 AARRVFPRLSNHQLHTVSAACG--YDLSRHHHALADAEACAWIAREIL 163 >gi|242371797|ref|ZP_04817371.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis M23864:W1] gi|242350498|gb|EES42099.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis M23864:W1] Length = 213 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V+++D T +F + P + + +HGI E Sbjct: 35 FVALDFET--ANGKRTSICSVGMVKVIDNQIT-ESFYTLVNPFD-YFTETNINVHGIKPE 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PSF ++ F +AHNA FD+ ++ L+++N + + Sbjct: 91 DVEGAPSFEYVYPYMLQFI--DQLPVVAHNAAFDMNVLHQSLKQLNIETPSMTYFCSYQL 148 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + H AL D+ + + +++ + Sbjct: 149 AKRTIDAYRYGL---KHLMNHYKLDFHGHHDALNDAKACAMITFRLLKHYDDL 198 >gi|229525619|ref|ZP_04415024.1| ribonuclease T [Vibrio cholerae bv. albensis VL426] gi|229339200|gb|EEO04217.1| ribonuclease T [Vibrio cholerae bv. albensis VL426] Length = 224 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L T + P G AL+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTVHFHVEPFEGANLEKAALEFTG 79 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD F+ A +R Sbjct: 80 IYDPFSPLRGAVSEDHALKEIYRLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 199 Query: 176 VGGSQIN 182 + Sbjct: 200 NQWKALG 206 >gi|307709092|ref|ZP_07645551.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK564] gi|307620038|gb|EFN99155.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK564] Length = 816 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIV-DHYSTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + L + +P Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAENLFFEGYELRNPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ + L LC+ GI + H H AL D+ +++ + + +Q+ Sbjct: 116 VDTVELAQVFFPE-MEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKIAQL 172 Query: 182 NFGF 185 G Sbjct: 173 PKGL 176 >gi|148825392|ref|YP_001290145.1| ribonuclease T [Haemophilus influenzae PittEE] gi|229846411|ref|ZP_04466519.1| ribonuclease T [Haemophilus influenzae 7P49H1] gi|166228565|sp|A5UAG1|RNT_HAEIE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|148715552|gb|ABQ97762.1| ribonuclease T [Haemophilus influenzae PittEE] gi|229810504|gb|EEP46222.1| ribonuclease T [Haemophilus influenzae 7P49H1] Length = 229 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G D+K D ++E+ A+ L Y ++ + P G +PE+LK +G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + Q + +AHNA FD F+ A +R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMIRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L C I + H AL D+ ++++ M+ Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACLAAKIPFDGKQAHSALYDTERTAELFCYMVN 202 Query: 177 GGSQIN 182 + Sbjct: 203 HLKDLG 208 >gi|331683160|ref|ZP_08383761.1| ribonuclease T [Escherichia coli H299] gi|331079375|gb|EGI50572.1| ribonuclease T [Escherichia coli H299] Length = 215 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHNFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L+ C+ G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|83312383|ref|YP_422647.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] gi|82947224|dbj|BAE52088.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] Length = 215 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 22/194 (11%) Query: 8 RKIVFDIETTGLD----------SKNDR----IIEIGAVELLDYSK---TNRTFQVFLCP 50 R + D ETTG K R +IEIG +EL+ + T ++Q L P Sbjct: 12 RIVAIDAETTGFKVPTPAEIKKMPKGLRLPGVVIEIGCLELVRGDEGWKTGESWQRRLQP 71 Query: 51 NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 G S ++ +HGI+ LK PSF + +F F + + + + Sbjct: 72 GG-PISKASIDVHGISPAELKTAPSFRDVLDDFEAFIGQDALLAHSAENEMEFLNFEYAR 130 Query: 111 QRINKDPLDPS---RIIDTLSIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDSHL 166 + T ++R+ P L+ LC R + HGALLD+ L Sbjct: 131 AGRCGFDEMIFGDGDFVCTQELSRQFFPGVPGSLDVLCDRLWVDRSDRFEHHGALLDAIL 190 Query: 167 LSDVYIKMMVGGSQ 180 ++ ++KM G Q Sbjct: 191 TAEAFMKMAGGFVQ 204 >gi|229523203|ref|ZP_04412610.1| ribonuclease T [Vibrio cholerae TM 11079-80] gi|229339566|gb|EEO04581.1| ribonuclease T [Vibrio cholerae TM 11079-80] Length = 224 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L T + P G AL+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTVHFHVEPFEGANLEKAALEFTG 79 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD F+ A +R Sbjct: 80 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIV 199 Query: 176 VGGSQIN 182 + Sbjct: 200 NQWKALG 206 >gi|260587155|ref|ZP_05853068.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] gi|260542350|gb|EEX22919.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] Length = 244 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 8/173 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLC-PNGRKNSPEALKLHG 64 + FD ETTGL++++ +IIE+ A+ + + + VF+ P G + + ++L G Sbjct: 15 VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQKIVELTG 74 Query: 65 ITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 ITDE + + + + F + +AHNA+FD+ F L+R + + Sbjct: 75 ITDEQLENEGITEAEAAARFTELIGGGRVLLVAHNAQFDLLFTAEMLRRHGNGGPEALKA 134 Query: 124 IDTLS--IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D L + + + L + Y + ++ H A+ D L +V M Sbjct: 135 ADYLDSLTVYKDRRAYPHKLANAILTYKLEDKVQNSHRAIDDVAALFEVCKAM 187 >gi|51597447|ref|YP_071638.1| bacteriophage protein [Yersinia pseudotuberculosis IP 32953] gi|186896564|ref|YP_001873676.1| exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis PB1/+] gi|51590729|emb|CAH22374.1| putative conserved bacteriophage protein [Yersinia pseudotuberculosis IP 32953] gi|186699590|gb|ACC90219.1| Exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis PB1/+] Length = 233 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 6/90 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++ D ETTGLD I+EI ++ + + P G + +HGIT+ Sbjct: 59 NYLILDTETTGLD-NAAEIVEISIIDCMGNVL----LDTLIKPLG-FIPSDVEAIHGITN 112 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97 + + + P + I +F + +N Sbjct: 113 KMVDNAPHWCDIHEKFIEIIKSRNFVAYNS 142 >gi|330838686|ref|YP_004413266.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena ATCC 35185] gi|329746450|gb|AEB99806.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena ATCC 35185] Length = 186 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 7/162 (4%) Query: 6 KMRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M I D ET TG + + VE+ D + + P G + + +HG Sbjct: 1 MMNYIAIDFETATG---SMNSACSVATVEVRDGQL-KEGWTTLIQPPGLRFDSFNIGIHG 56 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + + D P+F+ ++ E + +AHNA FD+G + A L Sbjct: 57 ISPKDVTDAPTFAEVWEELKERLAG--KIVVAHNASFDMGVLKASLLANRLQAPYFRTCC 114 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + + LN++ I H Sbjct: 115 TVRIARKVWPALDDHKLNTVGAHLNINFRHHRALDDARTCAA 156 >gi|170768829|ref|ZP_02903282.1| ribonuclease T [Escherichia albertii TW07627] gi|170122377|gb|EDS91308.1| ribonuclease T [Escherichia albertii TW07627] Length = 215 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A +AHNA FD F+ A +R + Sbjct: 80 IDPNDPERGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L+ C+ G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMEFDSNQAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|170755896|ref|YP_001781901.1| exonuclease family protein [Clostridium botulinum B1 str. Okra] gi|169121108|gb|ACA44944.1| exonuclease family protein [Clostridium botulinum B1 str. Okra] Length = 253 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 15/207 (7%) Query: 7 MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-S 56 M I+FD+E + + II+IGAV+L + T TF + P N + Sbjct: 1 MNYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAVKLNENLTTIDTFNALVKPEIYSNLN 57 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAELQRIN 114 P L +T + L F ++ +F F N+ + ++ + Sbjct: 58 PFIKNLTNLTMDSLNKAKPFREVYKDFLKFLNKDRNIFCIWGMTDMKELFRNIVYYELDT 117 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + + P S N S + H A D+ + ++ K+ Sbjct: 118 ESIPKEYINVQAYTGKYLNFPKSINVGLSNAVELFHITKNNDFHNAFNDAFYTAKIFKKI 177 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP 201 + N ++ + Sbjct: 178 YSEKIKTKIYKPANNSNTYRTKNTKTK 204 >gi|332343370|gb|AEE56704.1| ribonuclease T [Escherichia coli UMNK88] Length = 215 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L+ C+ G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|323462912|pdb|3NH0|A Chain A, Crystal Structure Of Rnase T In Complex With A Non-Preferred Ssdna (Aac) gi|323462913|pdb|3NH0|B Chain B, Crystal Structure Of Rnase T In Complex With A Non-Preferred Ssdna (Aac) gi|323462916|pdb|3NH1|A Chain A, Crystal Structure Of Rnase T In Complex With A Preferred Ssdna (Tagg) With Two Mg In The Active Site gi|323462917|pdb|3NH1|B Chain B, Crystal Structure Of Rnase T In Complex With A Preferred Ssdna (Tagg) With Two Mg In The Active Site gi|323462918|pdb|3NH1|C Chain C, Crystal Structure Of Rnase T In Complex With A Preferred Ssdna (Tagg) With Two Mg In The Active Site gi|323462919|pdb|3NH1|D Chain D, Crystal Structure Of Rnase T In Complex With A Preferred Ssdna (Tagg) With Two Mg In The Active Site gi|323462924|pdb|3NH2|A Chain A, Crystal Structure Of Rnase T In Complex With A Stem Dna With A 3' Overhang gi|323462925|pdb|3NH2|B Chain B, Crystal Structure Of Rnase T In Complex With A Stem Dna With A 3' Overhang gi|323462928|pdb|3NH2|E Chain E, Crystal Structure Of Rnase T In Complex With A Stem Dna With A 3' Overhang gi|323462929|pdb|3NH2|F Chain F, Crystal Structure Of Rnase T In Complex With A Stem Dna With A 3' Overhang Length = 235 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 40 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 99 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 100 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 159 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L+ C+ G+ H AL D+ + ++ +++ Sbjct: 160 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 219 Query: 177 GGSQIN 182 ++ Sbjct: 220 RWKRLG 225 >gi|323462903|pdb|3NGY|A Chain A, Crystal Structure Of Rnase T (E92g Mutant) gi|323462904|pdb|3NGY|B Chain B, Crystal Structure Of Rnase T (E92g Mutant) gi|323462905|pdb|3NGY|C Chain C, Crystal Structure Of Rnase T (E92g Mutant) gi|323462906|pdb|3NGY|D Chain D, Crystal Structure Of Rnase T (E92g Mutant) gi|323462908|pdb|3NGZ|A Chain A, Crystal Structure Of Rnase T In Complex With A Non-Preferred Ssdna (Gc) With One Mg In The Active Site gi|323462909|pdb|3NGZ|B Chain B, Crystal Structure Of Rnase T In Complex With A Non-Preferred Ssdna (Gc) With One Mg In The Active Site Length = 235 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 40 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 99 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 100 IDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 159 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L+ C+ G+ H AL D+ + ++ +++ Sbjct: 160 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 219 Query: 177 GGSQIN 182 ++ Sbjct: 220 RWKRLG 225 >gi|323187079|gb|EFZ72395.1| ribonuclease T [Escherichia coli RN587/1] Length = 215 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 80 IDPNDPDRGAISEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L+ C+ G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|300904499|ref|ZP_07122340.1| ribonuclease T [Escherichia coli MS 84-1] gi|300918020|ref|ZP_07134642.1| ribonuclease T [Escherichia coli MS 115-1] gi|301303165|ref|ZP_07209291.1| ribonuclease T [Escherichia coli MS 124-1] gi|300403565|gb|EFJ87103.1| ribonuclease T [Escherichia coli MS 84-1] gi|300414762|gb|EFJ98072.1| ribonuclease T [Escherichia coli MS 115-1] gi|300841574|gb|EFK69334.1| ribonuclease T [Escherichia coli MS 124-1] gi|315257547|gb|EFU37515.1| ribonuclease T [Escherichia coli MS 85-1] Length = 215 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L+ C+ G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|215486829|ref|YP_002329260.1| ribonuclease T [Escherichia coli O127:H6 str. E2348/69] gi|312966583|ref|ZP_07780803.1| ribonuclease T [Escherichia coli 2362-75] gi|331647141|ref|ZP_08348235.1| ribonuclease T [Escherichia coli M605] gi|331657625|ref|ZP_08358587.1| ribonuclease T [Escherichia coli TA206] gi|215264901|emb|CAS09287.1| ribonuclease T (RNase T) [Escherichia coli O127:H6 str. E2348/69] gi|281178725|dbj|BAI55055.1| ribonuclease T [Escherichia coli SE15] gi|312288693|gb|EFR16593.1| ribonuclease T [Escherichia coli 2362-75] gi|315299705|gb|EFU58947.1| ribonuclease T [Escherichia coli MS 16-3] gi|330911459|gb|EGH39969.1| ribonuclease T [Escherichia coli AA86] gi|331043924|gb|EGI16060.1| ribonuclease T [Escherichia coli M605] gi|331055873|gb|EGI27882.1| ribonuclease T [Escherichia coli TA206] Length = 215 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L+ C+ G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|16129610|ref|NP_416169.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. MG1655] gi|89108494|ref|AP_002274.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. W3110] gi|170081315|ref|YP_001730635.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B] gi|238900868|ref|YP_002926664.1| ribonuclease T (RNase T) [Escherichia coli BW2952] gi|300951237|ref|ZP_07165090.1| ribonuclease T [Escherichia coli MS 116-1] gi|300958527|ref|ZP_07170660.1| ribonuclease T [Escherichia coli MS 175-1] gi|301027673|ref|ZP_07190989.1| ribonuclease T [Escherichia coli MS 196-1] gi|301647832|ref|ZP_07247616.1| ribonuclease T [Escherichia coli MS 146-1] gi|307138309|ref|ZP_07497665.1| ribonuclease T [Escherichia coli H736] gi|331642247|ref|ZP_08343382.1| ribonuclease T [Escherichia coli H736] gi|266952|sp|P30014|RNT_ECOLI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|147688|gb|AAC37008.1| RNaseT [Escherichia coli] gi|1787941|gb|AAC74724.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. MG1655] gi|85675063|dbj|BAA15418.2| ribonuclease T (RNase T) [Escherichia coli str. K12 substr. W3110] gi|169889150|gb|ACB02857.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B] gi|238863473|gb|ACR65471.1| ribonuclease T (RNase T) [Escherichia coli BW2952] gi|260449223|gb|ACX39645.1| ribonuclease T [Escherichia coli DH1] gi|299879216|gb|EFI87427.1| ribonuclease T [Escherichia coli MS 196-1] gi|300314801|gb|EFJ64585.1| ribonuclease T [Escherichia coli MS 175-1] gi|300449493|gb|EFK13113.1| ribonuclease T [Escherichia coli MS 116-1] gi|301074022|gb|EFK88828.1| ribonuclease T [Escherichia coli MS 146-1] gi|309701879|emb|CBJ01191.1| ribonuclease T [Escherichia coli ETEC H10407] gi|315136293|dbj|BAJ43452.1| ribonuclease T [Escherichia coli DH1] gi|315618843|gb|EFU99426.1| ribonuclease T [Escherichia coli 3431] gi|323937257|gb|EGB33536.1| ribonuclease T [Escherichia coli E1520] gi|323940680|gb|EGB36871.1| ribonuclease T [Escherichia coli E482] gi|331039045|gb|EGI11265.1| ribonuclease T [Escherichia coli H736] Length = 215 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L+ C+ G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|15802066|ref|NP_288088.1| ribonuclease T [Escherichia coli O157:H7 EDL933] gi|15831615|ref|NP_310388.1| ribonuclease T [Escherichia coli O157:H7 str. Sakai] gi|24113043|ref|NP_707553.1| ribonuclease T [Shigella flexneri 2a str. 301] gi|26247900|ref|NP_753940.1| ribonuclease T [Escherichia coli CFT073] gi|30063168|ref|NP_837339.1| ribonuclease T [Shigella flexneri 2a str. 2457T] gi|74312020|ref|YP_310439.1| ribonuclease T [Shigella sonnei Ss046] gi|82777129|ref|YP_403478.1| ribonuclease T [Shigella dysenteriae Sd197] gi|91210866|ref|YP_540852.1| ribonuclease T [Escherichia coli UTI89] gi|110641774|ref|YP_669504.1| ribonuclease T [Escherichia coli 536] gi|117623836|ref|YP_852749.1| ribonuclease T [Escherichia coli APEC O1] gi|157159164|ref|YP_001462944.1| ribonuclease T [Escherichia coli E24377A] gi|157161115|ref|YP_001458433.1| ribonuclease T [Escherichia coli HS] gi|168752335|ref|ZP_02777357.1| ribonuclease T [Escherichia coli O157:H7 str. EC4113] gi|168759015|ref|ZP_02784022.1| ribonuclease T [Escherichia coli O157:H7 str. EC4401] gi|168765301|ref|ZP_02790308.1| ribonuclease T [Escherichia coli O157:H7 str. EC4501] gi|168771196|ref|ZP_02796203.1| ribonuclease T [Escherichia coli O157:H7 str. EC4486] gi|168775884|ref|ZP_02800891.1| ribonuclease T [Escherichia coli O157:H7 str. EC4196] gi|168783923|ref|ZP_02808930.1| ribonuclease T [Escherichia coli O157:H7 str. EC4076] gi|168789491|ref|ZP_02814498.1| ribonuclease T [Escherichia coli O157:H7 str. EC869] gi|168802776|ref|ZP_02827783.1| ribonuclease T [Escherichia coli O157:H7 str. EC508] gi|170019996|ref|YP_001724950.1| ribonuclease T [Escherichia coli ATCC 8739] gi|170681755|ref|YP_001743601.1| ribonuclease T [Escherichia coli SMS-3-5] gi|187731741|ref|YP_001880408.1| ribonuclease T [Shigella boydii CDC 3083-94] gi|188496363|ref|ZP_03003633.1| ribonuclease T [Escherichia coli 53638] gi|191165895|ref|ZP_03027732.1| ribonuclease T [Escherichia coli B7A] gi|191173445|ref|ZP_03034973.1| ribonuclease T [Escherichia coli F11] gi|193064949|ref|ZP_03046025.1| ribonuclease T [Escherichia coli E22] gi|193070264|ref|ZP_03051208.1| ribonuclease T [Escherichia coli E110019] gi|194426088|ref|ZP_03058644.1| ribonuclease T [Escherichia coli B171] gi|194436646|ref|ZP_03068747.1| ribonuclease T [Escherichia coli 101-1] gi|195940215|ref|ZP_03085597.1| ribonuclease T [Escherichia coli O157:H7 str. EC4024] gi|208810464|ref|ZP_03252340.1| ribonuclease T [Escherichia coli O157:H7 str. EC4206] gi|208816877|ref|ZP_03257997.1| ribonuclease T [Escherichia coli O157:H7 str. EC4045] gi|208820253|ref|ZP_03260573.1| ribonuclease T [Escherichia coli O157:H7 str. EC4042] gi|209396384|ref|YP_002270721.1| ribonuclease T [Escherichia coli O157:H7 str. EC4115] gi|209918966|ref|YP_002293050.1| ribonuclease T [Escherichia coli SE11] gi|217328725|ref|ZP_03444806.1| ribonuclease T [Escherichia coli O157:H7 str. TW14588] gi|218554220|ref|YP_002387133.1| ribonuclease T [Escherichia coli IAI1] gi|218558523|ref|YP_002391436.1| ribonuclease T [Escherichia coli S88] gi|218689598|ref|YP_002397810.1| ribonuclease T [Escherichia coli ED1a] gi|218695215|ref|YP_002402882.1| ribonuclease T [Escherichia coli 55989] gi|218699780|ref|YP_002407409.1| ribonuclease T [Escherichia coli IAI39] gi|218705152|ref|YP_002412671.1| ribonuclease T [Escherichia coli UMN026] gi|227885930|ref|ZP_04003735.1| exoribonuclease T [Escherichia coli 83972] gi|237705597|ref|ZP_04536078.1| ribonuclease T [Escherichia sp. 3_2_53FAA] gi|253773389|ref|YP_003036220.1| ribonuclease T [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161714|ref|YP_003044822.1| ribonuclease T [Escherichia coli B str. REL606] gi|254793269|ref|YP_003078106.1| ribonuclease T [Escherichia coli O157:H7 str. TW14359] gi|256018153|ref|ZP_05432018.1| ribonuclease T [Shigella sp. D9] gi|260843958|ref|YP_003221736.1| ribonuclease T [Escherichia coli O103:H2 str. 12009] gi|260855477|ref|YP_003229368.1| ribonuclease T [Escherichia coli O26:H11 str. 11368] gi|260868144|ref|YP_003234546.1| ribonuclease T [Escherichia coli O111:H- str. 11128] gi|261227902|ref|ZP_05942183.1| ribonuclease T (RNase T) [Escherichia coli O157:H7 str. FRIK2000] gi|261258364|ref|ZP_05950897.1| ribonuclease T [Escherichia coli O157:H7 str. FRIK966] gi|291282784|ref|YP_003499602.1| Ribonuclease T [Escherichia coli O55:H7 str. CB9615] gi|293405152|ref|ZP_06649144.1| ribonuclease T [Escherichia coli FVEC1412] gi|293409965|ref|ZP_06653541.1| ribonuclease T [Escherichia coli B354] gi|293414968|ref|ZP_06657611.1| ribonuclease T [Escherichia coli B185] gi|293446028|ref|ZP_06662450.1| ribonuclease T [Escherichia coli B088] gi|297520520|ref|ZP_06938906.1| ribonuclease T [Escherichia coli OP50] gi|298380798|ref|ZP_06990397.1| ribonuclease T [Escherichia coli FVEC1302] gi|300819590|ref|ZP_07099783.1| ribonuclease T [Escherichia coli MS 107-1] gi|300821475|ref|ZP_07101622.1| ribonuclease T [Escherichia coli MS 119-7] gi|300901538|ref|ZP_07119609.1| ribonuclease T [Escherichia coli MS 198-1] gi|300924684|ref|ZP_07140632.1| ribonuclease T [Escherichia coli MS 182-1] gi|300930881|ref|ZP_07146250.1| ribonuclease T [Escherichia coli MS 187-1] gi|300939029|ref|ZP_07153724.1| ribonuclease T [Escherichia coli MS 21-1] gi|300987874|ref|ZP_07178425.1| ribonuclease T [Escherichia coli MS 200-1] gi|300995389|ref|ZP_07181069.1| ribonuclease T [Escherichia coli MS 45-1] gi|301026836|ref|ZP_07190236.1| ribonuclease T [Escherichia coli MS 69-1] gi|301051019|ref|ZP_07197863.1| ribonuclease T [Escherichia coli MS 185-1] gi|301326587|ref|ZP_07219926.1| ribonuclease T [Escherichia coli MS 78-1] gi|306813383|ref|ZP_07447573.1| ribonuclease T [Escherichia coli NC101] gi|307310775|ref|ZP_07590421.1| ribonuclease T [Escherichia coli W] gi|309788378|ref|ZP_07682982.1| ribonuclease T [Shigella dysenteriae 1617] gi|309793418|ref|ZP_07687845.1| ribonuclease T [Escherichia coli MS 145-7] gi|312969674|ref|ZP_07783857.1| ribonuclease T [Escherichia coli 1827-70] gi|331653048|ref|ZP_08354053.1| ribonuclease T [Escherichia coli M718] gi|331663127|ref|ZP_08364037.1| ribonuclease T [Escherichia coli TA143] gi|331668331|ref|ZP_08369179.1| ribonuclease T [Escherichia coli TA271] gi|332279200|ref|ZP_08391613.1| ribonuclease T [Shigella sp. D9] gi|54039257|sp|P66682|RNT_ECO57 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|54039258|sp|P66683|RNT_SHIFL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|54042001|sp|P66681|RNT_ECOL6 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|122423656|sp|Q1RBE3|RNT_ECOUT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|123148046|sp|Q0THH6|RNT_ECOL5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|123562458|sp|Q32FB8|RNT_SHIDS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|123617229|sp|Q3Z208|RNT_SHISS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|166228563|sp|A1ABJ5|RNT_ECOK1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|166991088|sp|A7ZMB5|RNT_ECO24 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|166991089|sp|A8A0J6|RNT_ECOHS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|12515647|gb|AAG56641.1|AE005388_6 RNase T, degrades tRNA [Escherichia coli O157:H7 str. EDL933] gi|26108303|gb|AAN80505.1|AE016761_80 Ribonuclease T [Escherichia coli CFT073] gi|13361828|dbj|BAB35784.1| RNase T [Escherichia coli O157:H7 str. Sakai] gi|24052011|gb|AAN43260.1| RNase T [Shigella flexneri 2a str. 301] gi|30041420|gb|AAP17148.1| RNase T [Shigella flexneri 2a str. 2457T] gi|73855497|gb|AAZ88204.1| RNase T [Shigella sonnei Ss046] gi|81241277|gb|ABB61987.1| RNase T [Shigella dysenteriae Sd197] gi|91072440|gb|ABE07321.1| RNase T, degrades tRNA [Escherichia coli UTI89] gi|110343366|gb|ABG69603.1| ribonuclease T [Escherichia coli 536] gi|115512960|gb|ABJ01035.1| RNase T [Escherichia coli APEC O1] gi|157066795|gb|ABV06050.1| ribonuclease T [Escherichia coli HS] gi|157081194|gb|ABV20902.1| ribonuclease T [Escherichia coli E24377A] gi|169754924|gb|ACA77623.1| ribonuclease T [Escherichia coli ATCC 8739] gi|170519473|gb|ACB17651.1| ribonuclease T [Escherichia coli SMS-3-5] gi|187428733|gb|ACD08007.1| ribonuclease T [Shigella boydii CDC 3083-94] gi|187768648|gb|EDU32492.1| ribonuclease T [Escherichia coli O157:H7 str. EC4196] gi|188013802|gb|EDU51924.1| ribonuclease T [Escherichia coli O157:H7 str. EC4113] gi|188491562|gb|EDU66665.1| ribonuclease T [Escherichia coli 53638] gi|188998818|gb|EDU67804.1| ribonuclease T [Escherichia coli O157:H7 str. EC4076] gi|189354299|gb|EDU72718.1| ribonuclease T [Escherichia coli O157:H7 str. EC4401] gi|189360025|gb|EDU78444.1| ribonuclease T [Escherichia coli O157:H7 str. EC4486] gi|189364907|gb|EDU83323.1| ribonuclease T [Escherichia coli O157:H7 str. EC4501] gi|189370964|gb|EDU89380.1| ribonuclease T [Escherichia coli O157:H7 str. EC869] gi|189375329|gb|EDU93745.1| ribonuclease T [Escherichia coli O157:H7 str. EC508] gi|190904026|gb|EDV63738.1| ribonuclease T [Escherichia coli B7A] gi|190906287|gb|EDV65898.1| ribonuclease T [Escherichia coli F11] gi|192927436|gb|EDV82054.1| ribonuclease T [Escherichia coli E22] gi|192956445|gb|EDV86904.1| ribonuclease T [Escherichia coli E110019] gi|194416143|gb|EDX32409.1| ribonuclease T [Escherichia coli B171] gi|194424678|gb|EDX40664.1| ribonuclease T [Escherichia coli 101-1] gi|208724980|gb|EDZ74687.1| ribonuclease T [Escherichia coli O157:H7 str. EC4206] gi|208731220|gb|EDZ79909.1| ribonuclease T [Escherichia coli O157:H7 str. EC4045] gi|208740376|gb|EDZ88058.1| ribonuclease T [Escherichia coli O157:H7 str. EC4042] gi|209157784|gb|ACI35217.1| ribonuclease T [Escherichia coli O157:H7 str. EC4115] gi|209769438|gb|ACI83031.1| RNase T [Escherichia coli] gi|209769440|gb|ACI83032.1| RNase T [Escherichia coli] gi|209769442|gb|ACI83033.1| RNase T [Escherichia coli] gi|209769444|gb|ACI83034.1| RNase T [Escherichia coli] gi|209769446|gb|ACI83035.1| RNase T [Escherichia coli] gi|209912225|dbj|BAG77299.1| ribonuclease T [Escherichia coli SE11] gi|217318072|gb|EEC26499.1| ribonuclease T [Escherichia coli O157:H7 str. TW14588] gi|218351947|emb|CAU97679.1| ribonuclease T (RNase T) [Escherichia coli 55989] gi|218360988|emb|CAQ98561.1| ribonuclease T (RNase T) [Escherichia coli IAI1] gi|218365292|emb|CAR03013.1| ribonuclease T (RNase T) [Escherichia coli S88] gi|218369766|emb|CAR17537.1| ribonuclease T (RNase T) [Escherichia coli IAI39] gi|218427162|emb|CAR08045.2| ribonuclease T (RNase T) [Escherichia coli ED1a] gi|218432249|emb|CAR13139.1| ribonuclease T (RNase T) [Escherichia coli UMN026] gi|222033411|emb|CAP76152.1| ribonuclease T [Escherichia coli LF82] gi|226900354|gb|EEH86613.1| ribonuclease T [Escherichia sp. 3_2_53FAA] gi|227837109|gb|EEJ47575.1| exoribonuclease T [Escherichia coli 83972] gi|242377382|emb|CAQ32129.1| RNase T [Escherichia coli BL21(DE3)] gi|253324433|gb|ACT29035.1| ribonuclease T [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973615|gb|ACT39286.1| ribonuclease T [Escherichia coli B str. REL606] gi|253977810|gb|ACT43480.1| ribonuclease T [Escherichia coli BL21(DE3)] gi|254592669|gb|ACT72030.1| ribonuclease T (RNase T) [Escherichia coli O157:H7 str. TW14359] gi|257754126|dbj|BAI25628.1| ribonuclease T [Escherichia coli O26:H11 str. 11368] gi|257759105|dbj|BAI30602.1| ribonuclease T [Escherichia coli O103:H2 str. 12009] gi|257764500|dbj|BAI35995.1| ribonuclease T [Escherichia coli O111:H- str. 11128] gi|281601087|gb|ADA74071.1| Ribonuclease T [Shigella flexneri 2002017] gi|284921576|emb|CBG34648.1| ribonuclease T [Escherichia coli 042] gi|290762657|gb|ADD56618.1| Ribonuclease T [Escherichia coli O55:H7 str. CB9615] gi|291322858|gb|EFE62286.1| ribonuclease T [Escherichia coli B088] gi|291427360|gb|EFF00387.1| ribonuclease T [Escherichia coli FVEC1412] gi|291432616|gb|EFF05595.1| ribonuclease T [Escherichia coli B185] gi|291470433|gb|EFF12917.1| ribonuclease T [Escherichia coli B354] gi|294491548|gb|ADE90304.1| ribonuclease T [Escherichia coli IHE3034] gi|298278240|gb|EFI19754.1| ribonuclease T [Escherichia coli FVEC1302] gi|300297314|gb|EFJ53699.1| ribonuclease T [Escherichia coli MS 185-1] gi|300306022|gb|EFJ60542.1| ribonuclease T [Escherichia coli MS 200-1] gi|300355068|gb|EFJ70938.1| ribonuclease T [Escherichia coli MS 198-1] gi|300395276|gb|EFJ78814.1| ribonuclease T [Escherichia coli MS 69-1] gi|300406150|gb|EFJ89688.1| ribonuclease T [Escherichia coli MS 45-1] gi|300419111|gb|EFK02422.1| ribonuclease T [Escherichia coli MS 182-1] gi|300456057|gb|EFK19550.1| ribonuclease T [Escherichia coli MS 21-1] gi|300461297|gb|EFK24790.1| ribonuclease T [Escherichia coli MS 187-1] gi|300525978|gb|EFK47047.1| ribonuclease T [Escherichia coli MS 119-7] gi|300527838|gb|EFK48900.1| ribonuclease T [Escherichia coli MS 107-1] gi|300846749|gb|EFK74509.1| ribonuclease T [Escherichia coli MS 78-1] gi|305853128|gb|EFM53568.1| ribonuclease T [Escherichia coli NC101] gi|306908953|gb|EFN39449.1| ribonuclease T [Escherichia coli W] gi|307553675|gb|ADN46450.1| ribonuclease T [Escherichia coli ABU 83972] gi|307626861|gb|ADN71165.1| ribonuclease T [Escherichia coli UM146] gi|308123005|gb|EFO60267.1| ribonuclease T [Escherichia coli MS 145-7] gi|308923760|gb|EFP69263.1| ribonuclease T [Shigella dysenteriae 1617] gi|310337959|gb|EFQ03048.1| ribonuclease T [Escherichia coli 1827-70] gi|312946253|gb|ADR27080.1| ribonuclease T [Escherichia coli O83:H1 str. NRG 857C] gi|313648931|gb|EFS13368.1| ribonuclease T [Shigella flexneri 2a str. 2457T] gi|315060959|gb|ADT75286.1| ribonuclease T (RNase T) [Escherichia coli W] gi|315286357|gb|EFU45793.1| ribonuclease T [Escherichia coli MS 110-3] gi|320174139|gb|EFW49304.1| Ribonuclease T [Shigella dysenteriae CDC 74-1112] gi|320181325|gb|EFW56244.1| Ribonuclease T [Shigella boydii ATCC 9905] gi|320188340|gb|EFW63002.1| Ribonuclease T [Escherichia coli O157:H7 str. EC1212] gi|320195450|gb|EFW70075.1| Ribonuclease T [Escherichia coli WV_060327] gi|320197835|gb|EFW72443.1| Ribonuclease T [Escherichia coli EC4100B] gi|320642007|gb|EFX11371.1| ribonuclease T [Escherichia coli O157:H7 str. G5101] gi|320647324|gb|EFX16132.1| ribonuclease T [Escherichia coli O157:H- str. 493-89] gi|320652618|gb|EFX20887.1| ribonuclease T [Escherichia coli O157:H- str. H 2687] gi|320653004|gb|EFX21200.1| ribonuclease T [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658687|gb|EFX26364.1| ribonuclease T [Escherichia coli O55:H7 str. USDA 5905] gi|323152841|gb|EFZ39111.1| ribonuclease T [Escherichia coli EPECa14] gi|323169213|gb|EFZ54889.1| ribonuclease T [Shigella sonnei 53G] gi|323169961|gb|EFZ55617.1| ribonuclease T [Escherichia coli LT-68] gi|323180968|gb|EFZ66506.1| ribonuclease T [Escherichia coli 1180] gi|323186075|gb|EFZ71431.1| ribonuclease T [Escherichia coli 1357] gi|323378470|gb|ADX50738.1| ribonuclease T [Escherichia coli KO11] gi|323948052|gb|EGB44044.1| ribonuclease T [Escherichia coli H120] gi|323952162|gb|EGB48035.1| ribonuclease T [Escherichia coli H252] gi|323956663|gb|EGB52400.1| ribonuclease T [Escherichia coli H263] gi|323962144|gb|EGB57739.1| ribonuclease T [Escherichia coli H489] gi|323968420|gb|EGB63826.1| ribonuclease T [Escherichia coli M863] gi|323973968|gb|EGB69140.1| ribonuclease T [Escherichia coli TA007] gi|323978209|gb|EGB73295.1| ribonuclease T [Escherichia coli TW10509] gi|324007017|gb|EGB76236.1| ribonuclease T [Escherichia coli MS 57-2] gi|324011423|gb|EGB80642.1| ribonuclease T [Escherichia coli MS 60-1] gi|324016541|gb|EGB85760.1| ribonuclease T [Escherichia coli MS 117-3] gi|324119138|gb|EGC13026.1| ribonuclease T [Escherichia coli E1167] gi|326342019|gb|EGD65800.1| Ribonuclease T [Escherichia coli O157:H7 str. 1044] gi|326343571|gb|EGD67333.1| Ribonuclease T [Escherichia coli O157:H7 str. 1125] gi|327252769|gb|EGE64423.1| ribonuclease T [Escherichia coli STEC_7v] gi|331049146|gb|EGI21218.1| ribonuclease T [Escherichia coli M718] gi|331058926|gb|EGI30903.1| ribonuclease T [Escherichia coli TA143] gi|331063525|gb|EGI35436.1| ribonuclease T [Escherichia coli TA271] gi|332101552|gb|EGJ04898.1| ribonuclease T [Shigella sp. D9] gi|332756966|gb|EGJ87309.1| ribonuclease T [Shigella flexneri 4343-70] gi|332758172|gb|EGJ88497.1| ribonuclease T [Shigella flexneri 2747-71] gi|332758486|gb|EGJ88807.1| ribonuclease T [Shigella flexneri K-671] gi|332767056|gb|EGJ97255.1| ribonuclease T [Shigella flexneri 2930-71] gi|333004001|gb|EGK23536.1| ribonuclease T [Shigella flexneri K-218] gi|333005308|gb|EGK24828.1| ribonuclease T [Shigella flexneri VA-6] gi|333005888|gb|EGK25404.1| ribonuclease T [Shigella flexneri K-272] gi|333017888|gb|EGK37193.1| ribonuclease T [Shigella flexneri K-304] gi|333018868|gb|EGK38161.1| ribonuclease T [Shigella flexneri K-227] Length = 215 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L+ C+ G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|268601098|ref|ZP_06135265.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18] gi|268585229|gb|EEZ49905.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18] Length = 264 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPQFVAELTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + +AHN++FD F+ + S + + Sbjct: 85 DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++RR +P + I +H A+ D L D + Sbjct: 141 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 192 >gi|240115419|ref|ZP_04729481.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID18] Length = 255 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPQFVAELTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + +AHN++FD F+ + S + + Sbjct: 76 DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++RR +P + I +H A+ D L D + Sbjct: 132 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 183 >gi|119468877|ref|ZP_01611902.1| putative DNA polymerase, exonuclease activity [Alteromonadales bacterium TW-7] gi|119447529|gb|EAW28796.1| putative DNA polymerase, exonuclease activity [Alteromonadales bacterium TW-7] Length = 207 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 53/176 (30%), Gaps = 4/176 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E TGLDSK I+ + V + + Q F+ + + + TD Sbjct: 24 RYLVIDLELTGLDSKQHEIVSVAWVVIDNQCIKMSESQHFINKDVKSLEQSPVFHGISTD 83 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDT 126 + + S + + + HNA D GF+ L+ Sbjct: 84 SVAQGQ---SLQSILMSLSAHFSDCILVFHNAMLDWGFLKLALKNAGVTQRPKLIIDTLQ 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + R +S L+ L + ++ QI Sbjct: 141 IEKKRLLQHASDIKLDDLTLNECRNRYDLPSYHCHHALTDAQATAELLLAQCHQIG 196 >gi|332687228|ref|YP_004457002.1| exonuclease [Melissococcus plutonius ATCC 35311] gi|332371237|dbj|BAK22193.1| exonuclease [Melissococcus plutonius ATCC 35311] Length = 176 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 8/166 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + + V++ + + + + P + + +++HGI Sbjct: 1 MNFIAMDFET--ASHERHSACSLALVKVENSRIVDE-YYTLIQPETQFF-WKNIQIHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + D P F + F + N +AHNA FD + + L + + Sbjct: 57 PEDVTDAPKF-PEIWQGIQLFFQLNQLIVAHNAAFDCNVLASCLNYYKLPQPNYLSLCTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + + L+++C+ + H AL DS + + + Sbjct: 116 KTSRKFFRELPNHKLDTICRALN---IPLNHHNALDDSRACAKILL 158 >gi|153834777|ref|ZP_01987444.1| gp41 [Vibrio harveyi HY01] gi|148868812|gb|EDL67880.1| gp41 [Vibrio harveyi HY01] Length = 218 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 58/189 (30%), Gaps = 21/189 (11%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + + I+ D ETTGL S I+E A+ + P +A Sbjct: 12 MKKLSTENAIIIDTETTGLGSD-AEIVEFTAICADSGKVIVNE---LVKPTC-SIPADAT 66 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI----------------AHNAKFDVG 104 +HGIT+E +KD P F +FS + I NA + Sbjct: 67 AIHGITNEDVKDAPDFHLVFSNHFLPLLNGRPIIIYNSDFDTRLIIQSLDKHCNAAYVQS 126 Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 + + L++ C + + +S + H AL D Sbjct: 127 VHDLFFKFCIPQCAMLWYAEFFGVWNEHHEDYKWQSLSNACAQQSVDVSDLTAHRALADC 186 Query: 165 HLLSDVYIK 173 + + Sbjct: 187 EMTRRLIHA 195 >gi|124002773|ref|ZP_01687625.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134] gi|123992001|gb|EAY31388.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134] Length = 270 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 69/204 (33%), Gaps = 10/204 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG + DRI+E ++ L + + P E+ +HGI DE Sbjct: 12 VFFDLETTGTNIAKDRIVEWAFIKALPNGEIEKDV--KKINPE-MPIPIESSLVHGIYDE 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P+F SI F + + L+ ++ +++D Sbjct: 69 HVKDAPTFKSIAKNLVKFLEGCDLAGYNIVRFDVPVLVEEFLRVGVDFSVNNRKLVDAQK 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 I P + ++ S H A D+ +V + K Sbjct: 129 IFFMMEP----RTLTAAYKFYCNKSLEDAHTAEADTVATLEVLNAQIHHYE--GVEIKDK 182 Query: 189 EDRFFKEEKKTVPNISLLKRDKPL 212 E F V + L DK + Sbjct: 183 EGNSFVPVHNDVNKLHELVNDKIV 206 >gi|78486054|ref|YP_391979.1| DNA polymerase III subunit epsilon [Thiomicrospira crunogena XCL-2] gi|78364340|gb|ABB42305.1| conserved hypothetical protein containing exonuclease domain [Thiomicrospira crunogena XCL-2] Length = 293 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 66/226 (29%), Gaps = 17/226 (7%) Query: 11 VFDIETTGLDSKNDRIIEIG--AVELLD-----YSKTNRTFQVFLCPNGRKNSPEALKLH 63 + D ETTGLD++ IIE+G VE T + F L + S E ++ Sbjct: 45 IIDTETTGLDTRVCEIIELGYQIVEFDSQGNFYQILTAKNF---LNEPEGEISAEVTQVT 101 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDP 120 G+T + +K + A A + + + + ++ +D Sbjct: 102 GLTLDDVKGHQIPWAEVEADMADVQLCVAHNAAFDRPVVERYSDCFIDKVWGCSAVQVDW 161 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + S ++ R + + S + ++ Q Sbjct: 162 FHLAKVGSRSQEFLCWKVGQFFYGAHRALDDVQALTHLLTFPISEAALPAFHFLLASVRQ 221 Query: 181 INFGFKTNEDRFFKEEKKTVP--NISLLKRDKPLFTRIT--KEELD 222 K F ++ +R + +EE+ Sbjct: 222 QKVLIKATSAPFELKDDLKQRGYRWQPTERVWQKVFEASQQQEEIA 267 >gi|93006690|ref|YP_581127.1| ribonuclease T [Psychrobacter cryohalolentis K5] gi|92394368|gb|ABE75643.1| RNAse T [Psychrobacter cryohalolentis K5] Length = 246 Score = 51.9 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 67/207 (32%), Gaps = 16/207 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-----------NGRK 54 +V D+ET G +++ D ++EI + +L + F + P Sbjct: 40 VVVDVETAGFNAQTDALLEIACIPVLLNEQGVFYPGEAFNAHIEPFEGANLEPSALAFTG 99 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P I ++ E + + I HNA FD+ F+NA + R N Sbjct: 100 IDPNNPLRKAIAEDEKTALRRIFKGLKEVRRIEDCRQCVLIGHNAHFDLAFLNAAVLRTN 159 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P + + + CK G+ H AL D+ ++++ Sbjct: 160 NKSHNPFHNFSVFDTVTLSALAFGQTVLARACKAAGLDFDGNDAHSALYDTQKTAELFCY 219 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTV 200 ++ + + + + Sbjct: 220 ILNNYPMLANAMHSEPEITETATDNSK 246 >gi|269966452|ref|ZP_06180536.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B] gi|269828909|gb|EEZ83159.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B] Length = 248 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + D ETTGL+S+ D I+ IG V +D + N + + PN N + Sbjct: 58 FVSVDFETTGLNSEEDVILTIGLVPFTIDRVQCNGSAHWVVNPNRELNHESVIIHG 113 >gi|227538997|ref|ZP_03969046.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] gi|227241200|gb|EEI91215.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] Length = 203 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 69/203 (33%), Gaps = 10/203 (4%) Query: 9 KIVFDIE--TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 I D E T + + + +G V + T+ F + P + + ++HGI Sbjct: 6 FIAIDFELAT----AAYNSVCSVGIVRVDQGVITDE-FYSLVKPPKNEYMWQTTRVHGIK 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D P+F I+ + D + +V + ++ L + + Sbjct: 61 PKDTADAPTFEEIYPKIKDLLQNKKMVAHNEKFDREVLSKTMKACGLDYRELHLPVMWEC 120 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 S R + LN C+ G + H AL D+ + +Y+K ++ Sbjct: 121 TSKIYRDKGFKKTKLNLCCEIMG---IDLNHHEALSDAKAAAFLYLKQNEVTQELLDRVF 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRD 209 E+ + ++ RD Sbjct: 178 PAEELLIQPDEVAKKGEPDNGRD 200 >gi|121596441|ref|YP_988337.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42] gi|120608521|gb|ABM44261.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42] Length = 218 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 5/115 (4%) Query: 11 VFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG + ++ R E+ V + +R +Q + G + P +L GIT+ Sbjct: 8 VIDFETTGMMPAQGARATEVAIVLMEGGRVVDR-YQSLMR-TGVRIPPFITQLTGITNAM 65 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ++ P +++ E F + AHNA FD F AELQ P Sbjct: 66 VEAAPDAAAVMREAARFVGDAPMV--AHNAAFDRKFWQAELQHAGLAAPHPFACT 118 >gi|49079546|gb|AAT49904.1| PA3232 [synthetic construct] Length = 209 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 60/168 (35%), Gaps = 3/168 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D+ETT LD + I+ IGAV + ++++ P E++++H + Sbjct: 33 ISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPP-SLDAESIRIHKLRRA 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIIDTL 127 L+ + + F ++ + + +L Sbjct: 92 DLEGQLQLEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISSLYH 151 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R P + DL + + +H AL D+ ++ ++++++ Sbjct: 152 RKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLL 199 >gi|15598428|ref|NP_251922.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO1] gi|107102762|ref|ZP_01366680.1| hypothetical protein PaerPA_01003829 [Pseudomonas aeruginosa PACS2] gi|218890575|ref|YP_002439439.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa LESB58] gi|254236194|ref|ZP_04929517.1| hypothetical protein PACG_02159 [Pseudomonas aeruginosa C3719] gi|254241920|ref|ZP_04935242.1| hypothetical protein PA2G_02641 [Pseudomonas aeruginosa 2192] gi|9949354|gb|AAG06620.1|AE004746_4 probable nuclease [Pseudomonas aeruginosa PAO1] gi|126168125|gb|EAZ53636.1| hypothetical protein PACG_02159 [Pseudomonas aeruginosa C3719] gi|126195298|gb|EAZ59361.1| hypothetical protein PA2G_02641 [Pseudomonas aeruginosa 2192] gi|218770798|emb|CAW26563.1| probable nuclease [Pseudomonas aeruginosa LESB58] Length = 208 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 60/168 (35%), Gaps = 3/168 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D+ETT LD + I+ IGAV + ++++ P E++++H + Sbjct: 33 ISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPP-SLDAESIRIHKLRRA 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIIDTL 127 L+ + + F ++ + + +L Sbjct: 92 DLEGQLQLEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISSLYH 151 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R P + DL + + +H AL D+ ++ ++++++ Sbjct: 152 RKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLL 199 >gi|260887789|ref|ZP_05899052.1| exonuclease [Selenomonas sputigena ATCC 35185] gi|260862465|gb|EEX76965.1| exonuclease [Selenomonas sputigena ATCC 35185] Length = 202 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 7/162 (4%) Query: 6 KMRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M I D ET TG + + VE+ D + + P G + + +HG Sbjct: 17 MMNYIAIDFETATG---SMNSACSVATVEVRDGQL-KEGWTTLIQPPGLRFDSFNIGIHG 72 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + + D P+F+ ++ E + +AHNA FD+G + A L Sbjct: 73 ISPKDVTDAPTFAEVWEELKERLAG--KIVVAHNASFDMGVLKASLLANRLQAPYFRTCC 130 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + + LN++ I H Sbjct: 131 TVRIARKVWPALDDHKLNTVGAHLNINFRHHRALDDARTCAA 172 >gi|163751907|ref|ZP_02159120.1| exonuclease [Shewanella benthica KT99] gi|161328190|gb|EDP99355.1| exonuclease [Shewanella benthica KT99] Length = 227 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNG 52 + I D+E TGL+ +D+I+ IG + + + ++ Q + +G Sbjct: 41 KLIALDLEMTGLNPNHDQILSIGLIPIENNLLLLDKAEQKLIKVDG 86 >gi|312868848|ref|ZP_07729034.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus oris PB013-T2-3] gi|311095588|gb|EFQ53846.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus oris PB013-T2-3] Length = 282 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 4/171 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ET+GL+ + +II IGAV+ + T TF + K P + + Sbjct: 113 FVSLDLETSGLNPSSAQIISIGAVKRVAGHTT--TFYRLVKLESGKKVPVDIARMTGLNN 170 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + +N FD F+ + R + + Sbjct: 171 ERLAAEGVLVKEALIDLQAFTKGLPIVGYNLLFDERFLQTAVIRTGIVQFNNKMVDVLPY 230 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + L ++ +YG+ + H +L D+ ++ K++ Sbjct: 231 VKTTDKFCDNYHLTTVLAKYGVK--NEQPHNSLADATATMELVDKLIKIYG 279 >gi|311279484|ref|YP_003941715.1| ribonuclease T [Enterobacter cloacae SCF1] gi|308748679|gb|ADO48431.1| ribonuclease T [Enterobacter cloacae SCF1] Length = 217 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++E+ A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAITLKMDEQGWLMPDTTLHFHVEPFEGANLMPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + N A +AHNA FD F+ A +R Sbjct: 80 IDPSNPLRGAVSEYDALHAIFKAVRKGIKDQNCNRAIMVAHNATFDHSFVMAAAERAGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACIAAGMAFDGAQAHSALYDTEQTAQLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|152990071|ref|YP_001355793.1| DNA polymerase III subunit epsilon [Nitratiruptor sp. SB155-2] gi|151421932|dbj|BAF69436.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2] Length = 276 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 5/98 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIET G + ++IEIGA++ + +R F+ F+ KL GI E Sbjct: 70 FVVVDIETNGSKPEFSQVIEIGAIKFKGNTIIDR-FESFI--YAEDVPEYISKLTGILQE 126 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 L++ PS + F +F + A ++AHN +FD FI Sbjct: 127 DLENAPSQKEVLLSFKEFLQD--AVFVAHNVRFDYNFI 162 >gi|290991983|ref|XP_002678614.1| predicted protein [Naegleria gruberi] gi|284092227|gb|EFC45870.1| predicted protein [Naegleria gruberi] Length = 302 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 1/122 (0%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V DIE T ++ R+IE+ ++D + + +F + + ++ IT Sbjct: 80 NVVVLDIEGTSTNTSYCRMIEVACARIVDGTSIS-SFTSLVNADIDYIPEPVQEITKITK 138 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P + S+ ++F + Q + + HN +FD I E R + + D + Sbjct: 139 AMIDLSPPPQIVLSQLYNFLSSQPSLVVGHNVRFDASVIYNEFVRYKIINNEVHKPDDFI 198 Query: 128 SI 129 S Sbjct: 199 SH 200 >gi|145631430|ref|ZP_01787200.1| ribonuclease T [Haemophilus influenzae R3021] gi|145632574|ref|ZP_01788308.1| ribonuclease T [Haemophilus influenzae 3655] gi|145640270|ref|ZP_01795854.1| ribonuclease T [Haemophilus influenzae R3021] gi|144982967|gb|EDJ90476.1| ribonuclease T [Haemophilus influenzae R3021] gi|144986769|gb|EDJ93321.1| ribonuclease T [Haemophilus influenzae 3655] gi|145274856|gb|EDK14718.1| ribonuclease T [Haemophilus influenzae 22.4-21] Length = 229 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G D+K D ++E+ A+ L Y ++ + P G +PE+LK +G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + Q + +AHNA FD F+ A +R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAERTGVK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L C I + H AL D+ + ++ M+ Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACLAAKIPFDGKQAHSALYDTERTAKLFCYMVN 202 Query: 177 GGSQIN 182 + Sbjct: 203 HLKDLG 208 >gi|91223850|ref|ZP_01259114.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] gi|91191342|gb|EAS77607.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] Length = 248 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + D ETTGL+S+ D I+ IG V +D + N + + PN N + Sbjct: 58 FVSVDFETTGLNSEEDVILTIGLVPFTIDRVQCNGSAHWVVNPNRELNHESVIIHG 113 >gi|320668677|gb|EFX35482.1| ribonuclease T [Escherichia coli O157:H7 str. LSU-61] Length = 215 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDITLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L+ C+ G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|257439307|ref|ZP_05615062.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii A2-165] gi|257198182|gb|EEU96466.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii A2-165] Length = 244 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 8/173 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLC-PNGRKNSPEALKLHG 64 + FD ETTGL++++ +IIE+ A+ + + + VF+ P G + + ++L G Sbjct: 15 VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQKIVELTG 74 Query: 65 ITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 ITDE + + + + F + + +AHNA+FD+ F L+R + + Sbjct: 75 ITDEQLENEGITEAEAAARFTELISGGRVLLVAHNAQFDLLFTAEMLRRHGNGGPEALKA 134 Query: 124 IDTLS--IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D L + + + L + Y + ++ H A+ D L +V M Sbjct: 135 ADYLDSLTVYKDRRAYPHKLANAILTYKLEGKVQNSHRAIDDVAALFEVCKAM 187 >gi|153832018|ref|ZP_01984685.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01] gi|148872016|gb|EDL70839.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01] Length = 249 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + D ETTGL+++ D I+ IG V L + + + + PN N + Sbjct: 59 FVSVDFETTGLNAEQDAILTIGLVPFTLGRVQCSGSRHWVVNPNRELNEESVVIHG 114 >gi|326791343|ref|YP_004309164.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM 5427] gi|326542107|gb|ADZ83966.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM 5427] Length = 837 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 5/173 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+E+TGL + D +I+I A+ ++ + L P S Sbjct: 475 NIVVLDVESTGLSTIKDDVIQIAAIRYGKEGVVDQ-LDILLKP---TKSVGESYYVHGFS 530 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L K + Q A + HN +D+ I + + R +P+ ++ DTL Sbjct: 531 DDLLQKEGMEPKEALKQFVHFIQGAVLVGHNVNYDLQIIKSMMSRYKLEPIGEYQVYDTL 590 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +A + +P N + I H A+ D S+V ++ + Sbjct: 591 DLAYKVYPKLSNHKLETLSKL-IVTETIPTHNAMQDILATSEVLSHLLKHIEE 642 >gi|260101291|ref|ZP_05751528.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075] gi|260084876|gb|EEW68996.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075] Length = 929 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 7/169 (4%) Query: 9 KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K II+ G + + +T+ + P+ R+ + L GI + Sbjct: 10 FAVVDLETTGTQREKGHHIIQFGCAIIKNMKVV-KTYSFMINPH-REIPQSVVNLTGIHN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIID 125 E ++ K FS + + ++AHN FD+ F+N EL + + L ++ Sbjct: 68 EDVQGKDDFSVYAPKIIEILKG--TVFVAHNVDFDLPFLNYELVQHGYEALTNKAIDTVE 125 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IA PS + + + H++ A + LL + K+ Sbjct: 126 LAKIAFPTLPSYKLSDLTAQLKIKHLNPHKADSDAYGTAVLLIKIIHKL 174 >gi|294506958|ref|YP_003571016.1| DNA polymerase III polC-type [Salinibacter ruber M8] gi|294343286|emb|CBH24064.1| DNA polymerase III polC-type [Salinibacter ruber M8] Length = 258 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA---VELLDYSKTNRTFQVFLCPN 51 + FD+E TG D + RII+IG V D + + T V + P Sbjct: 18 VFFDLEATGTDPQAARIIQIGMQRFVPSEDGAALDETIDVLVDPE 62 >gi|145634678|ref|ZP_01790387.1| ribonuclease T [Haemophilus influenzae PittAA] gi|145268223|gb|EDK08218.1| ribonuclease T [Haemophilus influenzae PittAA] gi|309972517|gb|ADO95718.1| Ribonuclease T [Haemophilus influenzae R2846] Length = 229 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G D+K D ++E+ A+ L Y ++ + P G +PE+LK +G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + Q + +AHNA FD F+ A +R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L C I + H AL D+ + ++ M+ Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACLAAKIPFDGKQAHSALYDTERTAKLFCYMVN 202 Query: 177 GGSQIN 182 + Sbjct: 203 HLKDLG 208 >gi|330811888|ref|YP_004356350.1| exonuclease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379996|gb|AEA71346.1| Putative exonuclease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 203 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 7/170 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V L +R +Q + G + +L GI+ Sbjct: 3 RIAVIDFETTGITPSSSCRATEIAVVMLEQGRIVDR-YQSLMN-AGVRVPAFIEQLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--I 124 + L+ PS + +E +F +AHNA FD F + EL RI + L + Sbjct: 61 NAMLRSAPSAEKVMNEVNEFV--GITPLLAHNAAFDQKFWDFELGRIKRTRLQNFACSLL 118 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + LN+ +HR+ A + ++L + + ++ Sbjct: 119 LARRLMPAAPNHKLGTLNTFAGLPHTGQAHRAMADAEMAANLTAHLASQL 168 >gi|325508152|gb|ADZ19788.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum EA 2018] Length = 317 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 10/161 (6%) Query: 1 MIRKNK-----MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI+ K M+ D ET + K + IG V + D ++ + P + Sbjct: 1 MIKTKKIWRKEMKFTAIDFET--ANEKRNSPCSIGIVVVKDGHVVEKS-HHLIRPKEMRF 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P + +HGI ++ +P F ++ + +F++ IAHNA FD+ + + N Sbjct: 58 MPINIGIHGIRPAMVEKEPEFDKVWEKIKHYFDD--TLVIAHNASFDISVLRKSAELYNI 115 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156 + + + I LN++ G H Sbjct: 116 ELPEFNYICTMKLARNFYKGIENAKLNTVNNFLGYEFRHHD 156 >gi|152988293|ref|YP_001347274.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PA7] gi|150963451|gb|ABR85476.1| probable nuclease [Pseudomonas aeruginosa PA7] Length = 208 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNG 52 I D+ETT LD + I+ IGAV + ++++ P Sbjct: 33 ISLDLETTSLDPRRADILSIGAVLVRRGKLVLGERLELYVEPPP 76 >gi|126661817|ref|ZP_01732816.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38] gi|126625196|gb|EAZ95885.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38] Length = 453 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 82/238 (34%), Gaps = 16/238 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + + ++ F + P + P +KL GI + Sbjct: 2 YAIIDIETTGGQFNEEGITEIAIYKFDGHEVVDQ-FISLVNPE-KPIQPFVVKLTGINNA 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + + + +AHNA FD + E +R+ D + LS Sbjct: 60 MLRSAPKFYEVAKRIIE--ITEGCVIVAHNASFDYRILKTEFRRLGYDFKKQTLCTVELS 117 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 S + + I +H A D+ ++ ++V + Sbjct: 118 KKLIPEQPSYSL---GKLVRALGIPMADRHRANGDALATVKLFKMLLVKDIEKEIVKSFI 174 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT--IQTLGKNAIWDRYISSN 244 + + +I K I H++ + +GK+ + ++ + Sbjct: 175 KTEIKSGISPKLLDIVESLPSKTGIYYI-------HNEKGDLIYIGKSKNIKKRVNQH 225 >gi|160895546|ref|YP_001561128.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1] gi|160361130|gb|ABX32743.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1] Length = 211 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 5/98 (5%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ ++ R E+ V + +R FQ + G P +L GIT+ Sbjct: 7 VIDFETTGMAPAQGARATEVAIVLIEGGQVVDR-FQSLMR-TGAWIPPFITRLTGITNAM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 + P + + F AHNA FD F Sbjct: 65 VAAAPPAEEVMRDAARFVGSAPMV--AHNAAFDSKFWQ 100 >gi|258624472|ref|ZP_05719419.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus VM603] gi|258583319|gb|EEW08121.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus VM603] Length = 233 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50 + D ETTGL+++ D I+ IG V N+ + P Sbjct: 45 VALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQP 86 >gi|325954953|ref|YP_004238613.1| DNA polymerase III subunit alpha [Weeksella virosa DSM 16922] gi|323437571|gb|ADX68035.1| DNA polymerase III, alpha subunit [Weeksella virosa DSM 16922] Length = 1463 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 71/230 (30%), Gaps = 19/230 (8%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + R I+I + + P+G + Sbjct: 2 YLIFDTETTGLPKDWNAPITDSDNWPRCIQIAWQLHDELGNLVEHQDYLVKPDGFDIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP- 117 + ++HGI+ ++ + + + + N FD+ + AE R + Sbjct: 62 SERIHGISTALATEQGVPLEEVLDKFQKALAKTKFIVGQNLGFDINIMAAEFYRKGVENK 121 Query: 118 --------LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + L + + + + + + H A D + Sbjct: 122 LDQLPVLDTCTETTAELLKLPGGRGGRYKLPTLTELHEFLFQVPFSEAHNATADVEATAR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + +++ G + +E+ F + I+ + + ++ Sbjct: 182 CFFELIRTGVFTLQDLQKDENYFTRFRTANPTEIASIGLKHTNLKKASEA 231 >gi|254426843|ref|ZP_05040550.1| ribonuclease T [Alcanivorax sp. DG881] gi|196193012|gb|EDX87971.1| ribonuclease T [Alcanivorax sp. DG881] Length = 228 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRT-FQVFLCPNGRKNSPEALKLH 63 +V D+ET G +S+ D ++EI AV + + + R F V P Sbjct: 24 VVIDVETGGFNSQTDALLEIAAVLIEMDAQGNLRPSTRIQFHVDPFPGANLEQAALDFTG 83 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAELQRINKD 116 L+ S + ++ A + HN+ FD GF+NA R + Sbjct: 84 IDPSNPLRGAVSEETALKGVFEPIRKAVKQHGCSRAVLVGHNSFFDQGFLNAATDRADIK 143 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI S R H AL D+ ++++ M+ Sbjct: 144 RSPFHPFSSFDTATLAGLVYGQTVLAKACEAAGIRFSQREAHSALYDATRTAELFCSMVN 203 Query: 177 GGSQIN 182 + Sbjct: 204 RFKTLG 209 >gi|148979109|ref|ZP_01815317.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3] gi|145961975|gb|EDK27264.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3] Length = 238 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+ D II IG V L+ + L P +K E++ +HGIT Sbjct: 48 FLALDFETTGLNPSKDGIITIGLVPFTLNRIYLRQARHWTLRP-RQKLEEESVVIHGITH 106 Query: 68 EFLKDKP 74 + D P Sbjct: 107 NDIIDAP 113 >gi|323466410|gb|ADX70097.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus H10] Length = 927 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 7/169 (4%) Query: 9 KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K II+ G + + +T+ + P+ R+ + L GI + Sbjct: 10 FAVVDLETTGTQREKGHHIIQFGCAIIKNMKVV-KTYSFMINPH-REIPQSVVNLTGIHN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIID 125 E ++ + FS + + ++AHN FD+ F+N EL + + L ++ Sbjct: 68 EDVQGEDDFSVYAPKIIEILKG--TVFVAHNVDFDLPFLNYELVQHGYEALTNKAIDTVE 125 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IA PS + + + H++ A + LL + K+ Sbjct: 126 LAKIAFPTLPSYKLSDLTAQLKIKHLNPHKADSDAYGTAVLLIKIIHKL 174 >gi|254509159|ref|ZP_05121258.1| ribonuclease T [Vibrio parahaemolyticus 16] gi|219547910|gb|EED24936.1| ribonuclease T [Vibrio parahaemolyticus 16] Length = 213 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 71/200 (35%), Gaps = 14/200 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTN--RTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV ++ D T + P G EAL G Sbjct: 14 VVIDVETAGFNAKTDALLEICAVTLKMDDSGDLQPASTIHFHVEPFEGANIEKEALDFIG 73 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 + D F + + + + A +AHNA+FD F+ R Sbjct: 74 LRDPFSPLRGAIPESEALKEIYKLVRKEQKAADCSRAIIVAHNAQFDHSFVMEASDRSKL 133 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ ++ H AL D+ ++++ ++ Sbjct: 134 KRVPFHPFATFDTATLSGLAYGQTVLAKACKAAGMEFDNKEAHSALYDTKKTAELFCGIV 193 Query: 176 VGGSQINFGFKTNEDRFFKE 195 + + D Sbjct: 194 NKWKALGGWPLIDADAENNN 213 >gi|71064966|ref|YP_263693.1| DNA polymerase III subunit epsilon [Psychrobacter arcticus 273-4] gi|71037951|gb|AAZ18259.1| probable DNA polymerase III, epsilon subunit [Psychrobacter arcticus 273-4] Length = 203 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 1/66 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D E TGL+ K ++ + A+ + T + P S + T Sbjct: 35 WVAIDCEMTGLNPKKHHLLSVAAIHINGDKIDTGNGLHLLCRPPVMPKSDTIVIHGLRTA 94 Query: 68 EFLKDK 73 + Sbjct: 95 DVEHAM 100 >gi|84393001|ref|ZP_00991768.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01] gi|84376355|gb|EAP93236.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01] Length = 238 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+ D II IG V L+ + L P +K +++ +HGIT Sbjct: 48 FLAVDFETTGLNPNKDGIITIGLVPFTLNRIYLRQAKHWTLRPK-QKLEEDSVVIHGITH 106 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEW 94 + D P S + E + Sbjct: 107 NDIIDAPDLSEVLDEILESLAGHIPVV 133 >gi|332534821|ref|ZP_08410645.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332035733|gb|EGI72220.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 207 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 56/169 (33%), Gaps = 5/169 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL---HG 64 R +V D+E TGLD+K I+ + V + + Q + + + + + Sbjct: 24 RYLVIDLELTGLDAKQHEIVSVAWVIIDNQCIKMSKSQHLINKDVKSLAQSPVFHGISDD 83 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + L + + F D + + + F + I + + I Sbjct: 84 AIAKGLSLNSILMQLSNHFSDCILVFHNAML--DWVFLKIALKNANITIRPKLILDTLHI 141 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + ++DL R + H AL D+ +++ + Sbjct: 142 EQKRLLHHSTEIKQDDLTLNACRTRYELPSYHCHHALTDAQATAELLLA 190 >gi|163802823|ref|ZP_02196712.1| ribonuclease T [Vibrio sp. AND4] gi|159173363|gb|EDP58186.1| ribonuclease T [Vibrio sp. AND4] Length = 214 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 74/195 (37%), Gaps = 14/195 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L T + P G EAL+ +G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLSMDDTGNLHPASTIHFHIEPFEGANLEKEALEFNG 79 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + + A +AHNA FD+ F+NA +R Sbjct: 80 IRDPFSPLRGAISEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKAAGMEFDNREAHSALYDTQQTAELFCGIV 199 Query: 176 VGGSQINFGFKTNED 190 + +E Sbjct: 200 NKWKALGGWPLVDEK 214 >gi|152995559|ref|YP_001340394.1| ribonuclease T [Marinomonas sp. MWYL1] gi|150836483|gb|ABR70459.1| ribonuclease T [Marinomonas sp. MWYL1] Length = 222 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 68/198 (34%), Gaps = 13/198 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELL--DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + K D ++E+ A + + + T + P G AL G Sbjct: 16 VVIDVETAGFNQKTDALLEMAASILRMDENGDLYIHETLDFLIKPFEGANLEKAALDFTG 75 Query: 65 ITDEFLKDKPSFSSIFSEFW--------DFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HNA FD GF+NA ++R + Sbjct: 76 IDPFAPGRQDMPETEALNQMFSKVRKELKSVGCKRAILVGHNAAFDHGFLNAAIERADIK 135 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L C+ I S+ H A D+ ++++ +M+ Sbjct: 136 RNPFHPFSSFDTASLAGLVFGQTVLAKACEAASIPFSNSEAHSAKYDTEKTAELFCEMVN 195 Query: 177 GGSQINFGFKTNEDRFFK 194 ++ + Sbjct: 196 RLKRLGGWPLVENEAEDS 213 >gi|67077901|ref|YP_245521.1| DNA polymerase III fragment [Bacillus cereus E33L] gi|66970207|gb|AAY60183.1| possible exonuclease [Bacillus cereus E33L] Length = 287 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 11/137 (8%) Query: 5 NKM-----RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 NKM + ++ D ETTGL + D+IIEI ++L + P EA Sbjct: 122 NKMFINRDQFVILDTETTGL-TLRDQIIEICVIDLTGKIL----LNSLVKP-TINIPAEA 175 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGIT++ + D PS+ I+ E + + + + Sbjct: 176 ASIHGITNKMVHDAPSWIEIYKELCEVTAGKTLLIYNAEFDLGMIESTCIANNVEFKNFK 235 Query: 120 PSRIIDTLSIARRKHPS 136 + I+ + Sbjct: 236 STCIMKMYADYVDSKRW 252 >gi|319939450|ref|ZP_08013810.1| DNA polymerase III [Streptococcus anginosus 1_2_62CV] gi|319811436|gb|EFW07731.1| DNA polymerase III [Streptococcus anginosus 1_2_62CV] Length = 819 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 83/185 (44%), Gaps = 9/185 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M ++ + + V D+E T S N +II++G V + + +T++ + P+ K Sbjct: 1 MTQEKR-KYAVVDLEATSASS-NAKIIQVGIVLIENGQIV-KTYETDVNPH-EKLDSHIC 56 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+TD+ L+ P FS + E ++ + A ++AHN KFD + + Sbjct: 57 QLTGLTDKRLRRAPDFSQVAREIYELIED--AIFVAHNVKFDANLLA--EALFWEGFELV 112 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +DT+ +A+ P+ + I + H AL D+ + +++K+ + Sbjct: 113 TPRVDTVELAQVFFPTFEKYNL-GILCEQLDIPLKHAHTALADASATATLFLKIQEKIQK 171 Query: 181 INFGF 185 + Sbjct: 172 LPKEL 176 >gi|145636543|ref|ZP_01792211.1| ribonuclease T [Haemophilus influenzae PittHH] gi|145270368|gb|EDK10303.1| ribonuclease T [Haemophilus influenzae PittHH] Length = 229 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G D+K D ++E+ A+ L Y ++ + P G +PE+LK +G Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + Q + +AHNA FD F+ A +R Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMIRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L C I + H AL D+ + ++ M+ Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACLAAKIPFDGKQAHSALYDTERTAKLFCYMVN 202 Query: 177 GGSQIN 182 + Sbjct: 203 HLKDLG 208 >gi|315612858|ref|ZP_07887769.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus sanguinis ATCC 49296] gi|315314968|gb|EFU63009.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus sanguinis ATCC 49296] Length = 830 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 8/188 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ R +V D+E T SK +II++G V + + ++ + + P+ Sbjct: 1 MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIIDQ-YATDVNPH-EPLDSHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+TD+ L P FS + + ++ + ++AHN +FD + L + P Sbjct: 58 ELTGLTDQRLAAAPEFSQVAGKIFELVKD--GIFVAHNVQFDANLLAEFLFFEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +L LC+ GI + H H AL D+ +++ + M + Sbjct: 116 RVDT-VELAQVLYPQFEKYNLGILCQELGIELEHA--HTALSDAQATAELLLYMRQKLFE 172 Query: 181 INFGFKTN 188 + G + Sbjct: 173 LPKGLLES 180 >gi|293365088|ref|ZP_06611805.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus oralis ATCC 35037] gi|291316538|gb|EFE56974.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus oralis ATCC 35037] Length = 830 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 8/188 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ R +V D+E T SK +II++G V + + ++ + + P+ Sbjct: 1 MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIIDQ-YATDVNPH-EPLDSHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+TD+ L P FS + + ++ + ++AHN +FD + L + P Sbjct: 58 ELTGLTDQRLAVAPEFSQVAGKIFELVKD--GIFVAHNVQFDANLLAEFLFFEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +L LC+ GI + H H AL D+ +++ + M + Sbjct: 116 RVDT-VELAQVLYPQFEKYNLGILCQELGIELEHA--HTALSDAQATAELLLYMRQKLFE 172 Query: 181 INFGFKTN 188 + G + Sbjct: 173 LPKGLLES 180 >gi|218708963|ref|YP_002416584.1| ribonuclease T [Vibrio splendidus LGP32] gi|218321982|emb|CAV17988.1| Ribonuclease T (RNase T) [Vibrio splendidus LGP32] Length = 241 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 14/195 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A+ L T + P G AL +G Sbjct: 47 VVIDVETAGFNAETDALLEICAITLRMDENGDLHPASTLHFHIEPFEGANIEQAALDFNG 106 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + + A +AHNA FD+ F+NA +R Sbjct: 107 IKDPFSPLRGAVSEQEALKEIYKLVRKEQKASDCSRAIMVAHNATFDLNFVNAASERCKL 166 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + A + L C+ G+ ++ H AL D+ ++++ ++ Sbjct: 167 KRVPFHPFATFDTAALSGLAYGQTVLAKACRTAGMEFDNKEAHSALYDTQKTTELFCGIV 226 Query: 176 VGGSQINFGFKTNED 190 + +E+ Sbjct: 227 NKWKALGGWPLVDEE 241 >gi|104774090|ref|YP_619070.1| putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423171|emb|CAI97964.1| Putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 261 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 10/165 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTG +II+IGA+++ D + F ++ P + N L GI++ Sbjct: 10 VFDLETTGK-----KIIQIGALKVRDDQTVAK-FSTYVNPLEKINDY-VSHLTGISNYQT 62 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P + +F DF + + ++ S Sbjct: 63 DAAPLIDEVMPDFLDFVGDDTLVG---HNILSFDCNVLADNGYPVANPKLDTLLLANSYK 119 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + L + + H A+ D + VY K++ Sbjct: 120 KRGLFADPIPNVRLSTLKEYYGININFHIAISDCITNNIVYQKLL 164 >gi|329903276|ref|ZP_08273408.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium IMCC9480] gi|327548440|gb|EGF33116.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium IMCC9480] Length = 216 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 14 IETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 ETTG+ DR+ E+ A+ ++ +R F + + R + + + Sbjct: 4 FETTGMSPALGDRVTEVAALRIVGGVVVDR-FVSLINCDVRISPFISQLTGITQAMVDRA 62 Query: 73 KP 74 P Sbjct: 63 PP 64 >gi|315290558|gb|EFU49932.1| ribonuclease T [Escherichia coli MS 153-1] Length = 215 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 80 IDPSDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L+ C+ G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|258620167|ref|ZP_05715206.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus VM573] gi|262165546|ref|ZP_06033283.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223] gi|258587525|gb|EEW12235.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus VM573] gi|262025262|gb|EEY43930.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223] Length = 233 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50 + D ETTGL+++ D I+ IG V N+ + P Sbjct: 45 VALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQP 86 >gi|27366371|ref|NP_761899.1| ribonuclease T [Vibrio vulnificus CMCP6] gi|320156882|ref|YP_004189261.1| ribonuclease T [Vibrio vulnificus MO6-24/O] gi|29611837|sp|Q8D882|RNT_VIBVU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|27362572|gb|AAO11426.1| ribonuclease T [Vibrio vulnificus CMCP6] gi|319932194|gb|ADV87058.1| ribonuclease T [Vibrio vulnificus MO6-24/O] Length = 217 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 14/197 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L T + P +G EAL+ +G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFDGANLEKEALEFNG 79 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + A +AHNA FD+ F+NA +R Sbjct: 80 IRDPFSPLRGAVTEQEALKEIYKLIRREQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L CK G+ +R H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACKTAGMEFDNREAHSALYDTEKTAELFCGIV 199 Query: 176 VGGSQINFGFKTNEDRF 192 + ++ Sbjct: 200 NKWKALGGWPLIEDENE 216 >gi|194333877|ref|YP_002015737.1| Exonuclease RNase T and DNA polymerase III [Prosthecochloris aestuarii DSM 271] gi|194311695|gb|ACF46090.1| Exonuclease RNase T and DNA polymerase III [Prosthecochloris aestuarii DSM 271] Length = 189 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 20/180 (11%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP--------EALKLHG 64 D+ETTG + II+IGA+ +D G + SP E +L Sbjct: 11 DVETTGTNPAKHGIIQIGAIIEVDGVVVEECNLKCAPHEGAEISPDALAISGTERSELES 70 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP------- 117 + + E +N FD+ FI A + Sbjct: 71 RMTSHEAYTQFRHFLSRHIEQYDREDKCYPAGYNIHFDLNFIQAWFRHHGDKYGIGSFIN 130 Query: 118 --LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + R+ L ++C+ +GI + H A+ D ++ +K++ Sbjct: 131 WRMLDPLPLLFIKDFTRQITLPDYRLETVCRHFGIALHA---HDAMSDIRATRELLLKLL 187 >gi|332703188|ref|ZP_08423276.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio africanus str. Walvis Bay] gi|332553337|gb|EGJ50381.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio africanus str. Walvis Bay] Length = 246 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D E TG+D + D I+ IGAV + + + + P+ +H IT Sbjct: 51 VLDTELTGMDHRRDEIVSIGAVRIRGMAIQPGANWYAVVRPSC--LPKACTLIHRITPSE 108 Query: 70 LKDKPSFSSIFSEFWDFF 87 ++ P S + EF D+ Sbjct: 109 VEAAPELSDVLPEFADYL 126 >gi|325125846|gb|ADY85176.1| DNA polymerase III, epsilon subunit [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 286 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTG +II+IGA+++ D + F ++ P + N L GI++ Sbjct: 35 VFDLETTGK-----KIIQIGALKVRDDQTVAK-FSTYVNPLEKINDY-VSHLTGISNYQT 87 Query: 71 KDKPSFSSIFSEFWDFF 87 P + +F DF Sbjct: 88 DAAPLIDEVMPDFLDFV 104 >gi|291044082|ref|ZP_06569798.1| DNA polymerase III [Neisseria gonorrhoeae DGI2] gi|291012545|gb|EFE04534.1| DNA polymerase III [Neisseria gonorrhoeae DGI2] Length = 264 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + +AHN++FD F+ + S + + Sbjct: 85 DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++RR +P + I +H A+ D L D + Sbjct: 141 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 192 >gi|268686367|ref|ZP_06153229.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035] gi|268626651|gb|EEZ59051.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035] Length = 264 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + +AHN++FD F+ + S + + Sbjct: 85 DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++RR +P + I +H A+ D L D + Sbjct: 141 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 192 >gi|268684113|ref|ZP_06150975.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679] gi|268624397|gb|EEZ56797.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679] Length = 264 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + +AHN++FD F+ + S + + Sbjct: 85 DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++RR +P + I +H A+ D L D + Sbjct: 141 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 192 >gi|268603417|ref|ZP_06137584.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1] gi|268587548|gb|EEZ52224.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1] Length = 264 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + +AHN++FD F+ + S + + Sbjct: 85 DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++RR +P + I +H A+ D L D + Sbjct: 141 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 192 >gi|260440770|ref|ZP_05794586.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI2] Length = 255 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + +AHN++FD F+ + S + + Sbjct: 76 DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++RR +P + I +H A+ D L D + Sbjct: 132 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 183 >gi|240127974|ref|ZP_04740635.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035] Length = 255 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + +AHN++FD F+ + S + + Sbjct: 76 DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++RR +P + I +H A+ D L D + Sbjct: 132 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 183 >gi|240125521|ref|ZP_04738407.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679] Length = 255 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + +AHN++FD F+ + S + + Sbjct: 76 DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++RR +P + I +H A+ D L D + Sbjct: 132 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 183 >gi|240117716|ref|ZP_04731778.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID1] Length = 255 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + +AHN++FD F+ + S + + Sbjct: 76 DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++RR +P + I +H A+ D L D + Sbjct: 132 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 183 >gi|240016771|ref|ZP_04723311.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA6140] gi|240112673|ref|ZP_04727163.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae MS11] Length = 255 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + +AHN++FD F+ + S + + Sbjct: 76 DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++RR +P + I +H A+ D L D + Sbjct: 132 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 183 >gi|239998744|ref|ZP_04718668.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae 35/02] gi|240014337|ref|ZP_04721250.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI18] gi|240080968|ref|ZP_04725511.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA19] gi|240121900|ref|ZP_04734862.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID24-1] gi|240123269|ref|ZP_04736225.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID332] gi|268594593|ref|ZP_06128760.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268597081|ref|ZP_06131248.1| DNA polymerase III [Neisseria gonorrhoeae FA19] gi|268547982|gb|EEZ43400.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268550869|gb|EEZ45888.1| DNA polymerase III [Neisseria gonorrhoeae FA19] Length = 255 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + +AHN++FD F+ + S + + Sbjct: 76 DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 131 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++RR +P + I +H A+ D L D + Sbjct: 132 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 183 >gi|254493534|ref|ZP_05106705.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291] gi|268681897|ref|ZP_06148759.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332] gi|226512574|gb|EEH61919.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291] gi|268622181|gb|EEZ54581.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332] gi|317164039|gb|ADV07580.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae TCDC-NG08107] Length = 264 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + +AHN++FD F+ + S + + Sbjct: 85 DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++RR +P + I +H A+ D L D + Sbjct: 141 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 192 >gi|194098334|ref|YP_002001392.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae NCCP11945] gi|268598740|ref|ZP_06132907.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11] gi|193933624|gb|ACF29448.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae NCCP11945] gi|268582871|gb|EEZ47547.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11] Length = 264 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + +AHN++FD F+ + S + + Sbjct: 85 DGMVADAPVFAEIAGGLFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++RR +P + I +H A+ D L D + Sbjct: 141 VQLSRRLYPQFYKHSLDGI-IERLGIVVEDRHRAMADVSALCDYLEYSLSAHG 192 >gi|157375459|ref|YP_001474059.1| DNA polymerase III subunit epsilon [Shewanella sediminis HAW-EB3] gi|157317833|gb|ABV36931.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis HAW-EB3] Length = 238 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 1/56 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + D ETTGLD+ + II IG V L + F+ P + + Sbjct: 48 FVALDFETTGLDANQNSIISIGLVPFTLQRIACRQAKHWFVTPEDKLQEDSIIIHG 103 >gi|116514157|ref|YP_813063.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093472|gb|ABJ58625.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 261 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTG +II+IGA+++ D + F ++ P + N L GI++ Sbjct: 10 VFDLETTGK-----KIIQIGALKVRDDQTVAK-FSTYVNPLEKINDY-VSHLTGISNYQT 62 Query: 71 KDKPSFSSIFSEFWDFF 87 P + +F DF Sbjct: 63 DAAPLIDEVMPDFLDFV 79 >gi|226355514|ref|YP_002785254.1| ATP-dependent DNA helicase [Deinococcus deserti VCD115] gi|226317504|gb|ACO45500.1| putative ATP-dependent DNA helicase [Deinococcus deserti VCD115] Length = 1683 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 68/217 (31%), Gaps = 14/217 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN--GRKNSPEALKLHGIT 66 ++ D ETT +D R++E+ AV + D T Q+ + R+ + Sbjct: 9 YVILDTETTSVDRAEARLLEVAAVRVEDGRIC-DTLQLLVSGERIPREVAELTGIRQEEL 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + P F + + + + + ++ Sbjct: 68 DRDGQPLPDVLKQVLAFMGDLPVVGHNAQGFDVPLLKRLCREQSLKFQVPFVFDTLLLAP 127 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L+ A P L L R+ H H L D S + M+ + Sbjct: 128 LAFAAVVPPVEGYGLEGLHARF-CGDVHDDAHRTLADCAATSRLLAYMVERLRALP---- 182 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 ED+ VP ++L + + ITK EL+ Sbjct: 183 --EDQKALISALPVPELALAFQPRS----ITKAELER 213 >gi|93005267|ref|YP_579704.1| DNA polymerase III subunit epsilon [Psychrobacter cryohalolentis K5] gi|92392945|gb|ABE74220.1| Exonuclease [Psychrobacter cryohalolentis K5] Length = 203 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 53/169 (31%), Gaps = 4/169 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D E TGL+ K ++ + A+ + T + P + + +HG+ Sbjct: 35 WVAIDCEMTGLNPKKHHLLSVAAIHINGDKIDTGNGLHLLCRPPVMPE-GDTIVIHGLRT 93 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINKDPLDPSRIID 125 ++ S+ + F + + F + + + + R + Sbjct: 94 ADVEHAMSYDEMLGLLLPFISNRPLVGFCPQIDVGFLNPLVKHYMGTHLPNEIIDIRPLY 153 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + R S + I H A D+ + + ++ M Sbjct: 154 SRRMMGRSQGLSSQAQHLNSILAHYNIPELGTHDAYNDAIMTAMAFLHM 202 >gi|94499932|ref|ZP_01306467.1| exonuclease [Oceanobacter sp. RED65] gi|94427790|gb|EAT12765.1| exonuclease [Oceanobacter sp. RED65] Length = 224 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 46/167 (27%), Gaps = 1/167 (0%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTGL K++ ++ IG V + + ++ + Sbjct: 42 RYLVIDTETTGLSPKDNTLLSIGWVAIESGKVKLNSARHRYIKVKEGVGQSATIHQIRDC 101 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + + + F + PL + I+ Sbjct: 102 ELQDGVTINQAMAEVLTAMKDSVLVFHHAPMDMAFLNKYCRQLYNAPLLMPLVDTLNIEK 161 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R +S H AL D+ +++ + Sbjct: 162 SRHMHNDQARKNGFFRLAHCRQRYGLSAHQGHNALTDAIATAELLLA 208 >gi|319653481|ref|ZP_08007580.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2] gi|317394680|gb|EFV75419.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2] Length = 202 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 20/177 (11%), Positives = 47/177 (26%), Gaps = 5/177 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K KM + D+ETTGL +D IIE+ + T + + Sbjct: 1 MRNKEKMGLL-LDVETTGLGPNSDEIIELALKLFSYRADTGEILDIKDKAAFLREPISKS 59 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + + F + ++ + +D + +A + + Sbjct: 60 AKNNYSRAFRVHGIPYEAVSGKCFDDIKIKK---YFFHADSVFAHNASFDRSFLYRMYPE 116 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R P + ++ ++ ++++ Sbjct: 117 DINELKWYCTMRSVPWKEYGFTDSKLLTLLQSHQIAESQTHRAMDDIT-YLLELLKK 172 >gi|262171676|ref|ZP_06039354.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451] gi|261892752|gb|EEY38738.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451] Length = 233 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50 + D ETTGL+++ D I+ IG V N+ + P Sbjct: 45 VALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQP 86 >gi|326562712|gb|EGE13014.1| ribonuclease T [Moraxella catarrhalis 103P14B1] gi|326568721|gb|EGE18791.1| ribonuclease T [Moraxella catarrhalis BC8] gi|326574186|gb|EGE24134.1| ribonuclease T [Moraxella catarrhalis 101P30B1] gi|326575625|gb|EGE25549.1| ribonuclease T [Moraxella catarrhalis O35E] Length = 232 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 72/211 (34%), Gaps = 16/211 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-----------NGRK 54 +V D+ET G ++ D ++EI V + + P Sbjct: 22 VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 +P++ I+++ + + + HNA FD+GF+NA + R N Sbjct: 82 INPDSPFRKAISEDEKTALRRIFKALKALKKEHSCRQCILVGHNAHFDLGFLNAAIARTN 141 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNS-LCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P L + + + + C G+ ++ H AL D+ ++++ Sbjct: 142 SKNHSPFHTFSVLDTVSFAALTYGHTVLAKTCMIAGLEFDNQHAHSALYDAQKTAELFCH 201 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204 ++ + ++ P+++ Sbjct: 202 IVNQNTLLSTNHANLTQNDTPTNSHQTPSLT 232 >gi|82543982|ref|YP_407929.1| ribonuclease T [Shigella boydii Sb227] gi|194434706|ref|ZP_03066959.1| ribonuclease T [Shigella dysenteriae 1012] gi|123559690|sp|Q321A7|RNT_SHIBS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|81245393|gb|ABB66101.1| RNase T [Shigella boydii Sb227] gi|194417044|gb|EDX33160.1| ribonuclease T [Shigella dysenteriae 1012] gi|320186326|gb|EFW61062.1| Ribonuclease T [Shigella flexneri CDC 796-83] gi|332093985|gb|EGI99038.1| ribonuclease T [Shigella dysenteriae 155-74] gi|332096070|gb|EGJ01075.1| ribonuclease T [Shigella boydii 3594-74] Length = 215 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F+ A +R + Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMIAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L+ C+ G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|159903267|ref|YP_001550611.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9211] gi|159888443|gb|ABX08657.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9211] Length = 245 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 63/212 (29%), Gaps = 6/212 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ETTGLDS D+ +EIGA+ + KT + + + Sbjct: 25 ILDTETTGLDSDKDQCLEIGAILF--HVKTRSVLAQ--NSFLLPVDENSAESINRIPAEI 80 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + ++++ + +AHN FD + + P S + Sbjct: 81 TRIFQPWEMGMKYFEELVDCAEAVVAHNVAFDKQWFGSPPLPKLIKPWICSMEDISWPSH 140 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--KMMVGGSQINFGFKTN 188 + +L + +HR+ + + + ++V G + + Sbjct: 141 LQLRSRPSVRDLALAYEIPVWSAHRALTDCIYLAEVFRRCDQLETLLVHGLEPRMLMRAQ 200 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + K R++ E Sbjct: 201 VSYEQRHLAKNAGFRWNDPVHGAWTRRLSARE 232 >gi|88705709|ref|ZP_01103419.1| Ribonuclease T [Congregibacter litoralis KT71] gi|88700222|gb|EAQ97331.1| Ribonuclease T [Congregibacter litoralis KT71] Length = 210 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 67/198 (33%), Gaps = 16/198 (8%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLD--YSKTNRTFQVFLCP-NG 52 M K++ R ++ D+ET G S D I+EI A V + D + T + P G Sbjct: 1 MSMKSRFRGFLPVIVDMETGGFSSSTDAILEIAATVVRMDDTGQIAVHETHSFNVAPFEG 60 Query: 53 RKNSPEALKLHGITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 AL GI + I A + HNA FD G Sbjct: 61 ANIEQSALDFTGIDPWHPFREALAEKEALGELFQIIRREIRDQECTRAILVGHNAHFDAG 120 Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 F+NA ++R + + L C GI + H A D+ Sbjct: 121 FLNAAVERCEIKRNPFHPFSHFDTATLSGLAYGQTVLAKSCYEAGIPFDNEQAHSAAYDA 180 Query: 165 HLLSDVYIKMMVGGSQIN 182 ++++ ++ ++ Sbjct: 181 ERTAELFCGIVNTWQKLG 198 >gi|253800757|ref|YP_003033758.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 1435] gi|289555976|ref|ZP_06445186.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 605] gi|297636389|ref|ZP_06954169.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN 4207] gi|297733383|ref|ZP_06962501.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN R506] gi|313660714|ref|ZP_07817594.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN V2475] gi|253322260|gb|ACT26863.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 1435] gi|289440608|gb|EFD23101.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 605] gi|328460485|gb|AEB05908.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 4207] Length = 329 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 70/201 (34%), Gaps = 7/201 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +P F+ I E D +AHN FD F+ AE + + + Sbjct: 75 DGQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R + L +L + + + H A D +L+ + + +++ + Sbjct: 133 RLQLGVDNLRLETLAAHW--RVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPVHPV 190 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 + V + L Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211 >gi|322419698|ref|YP_004198921.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M18] gi|320126085|gb|ADW13645.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M18] Length = 314 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 19/35 (54%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44 I D ETTGL+ K D++IE+G V + + Sbjct: 57 ICLDTETTGLNHKEDKVIELGIVAFEFDPLSGEIY 91 >gi|149374321|ref|ZP_01892095.1| ribonuclease T [Marinobacter algicola DG893] gi|149361024|gb|EDM49474.1| ribonuclease T [Marinobacter algicola DG893] Length = 211 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNR--TFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++EI AV + D R T + P G AL G Sbjct: 11 VVVDVETGGFNPEKDALLEIAAVILTMDDDGWLKRAETHVQQIDPFEGANLEQSALDFTG 70 Query: 65 ITDEFLKD--------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A + HNA FD F+ A R + Sbjct: 71 IDPWNPEREAVPEREGMSEIFGPIRKAVKAHDCKRAVLVGHNATFDHNFVFAAALRSDIR 130 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L CK GI S++ H A D+ +D++ ++ Sbjct: 131 RNPFHPFSTFDTATLAGLAYGHTVLAQACKLAGIPFSNKDAHSAAYDAEKTADLFCGIVN 190 Query: 177 GGSQIN 182 +I Sbjct: 191 RWREIG 196 >gi|218528419|ref|YP_002419235.1| exonuclease RNase T and DNA polymerase III [Methylobacterium chloromethanicum CM4] gi|218520722|gb|ACK81307.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium chloromethanicum CM4] Length = 297 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 72/211 (34%), Gaps = 8/211 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ET + + D +G + R + P + SP +++HGI Sbjct: 1 MKVVAIDFET--ANERRDSACAVGLAWIEGGRVARRE-SRLIRPPQLRFSPGNIRVHGIL 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D P+F + +EF + +AHNA FD+G + A L + D + Sbjct: 58 PADVRDAPTFPEVIAEFLPDLSG--GLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 R + + L K G H A D+ +++ + + + Sbjct: 116 QIARRVFPDPAGHGL---AKVAGRLGIRFEHHDAGEDAFACAEIALAALRETGAADIADL 172 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 T P + + R + Sbjct: 173 ARGLGLTPIRALTTPRRDMTRSTSAKALRAS 203 >gi|331701662|ref|YP_004398621.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri NRRL B-30929] gi|329129005|gb|AEB73558.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri NRRL B-30929] Length = 177 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 54/160 (33%), Gaps = 5/160 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET ++K I + D T F + P S + +HGI Sbjct: 1 MNFVAMDFET--ANAKRASACSIALAIVRDNQIT-NEFYSLINPE-MDFSWRNINVHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P+F N IAHNA FD + L+R P + Sbjct: 57 ERDVVDAPTF-PEVWRHIQPLFSANKLVIAHNASFDNSVLKRTLERYEVQPPHYLTLDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + + + LN+LC + I + H + Sbjct: 116 RTSKQFYPTLENHKLNTLCDKLNIVLKHHHNALDDSVACA 155 >gi|326565468|gb|EGE15639.1| ribonuclease T [Moraxella catarrhalis 12P80B1] gi|326572590|gb|EGE22579.1| ribonuclease T [Moraxella catarrhalis CO72] Length = 232 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 71/211 (33%), Gaps = 16/211 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-----------NGRK 54 +V D+ET G ++ D ++EI V + + P Sbjct: 22 VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 +P++ I+++ + + HNA FD+GF+NA + R N Sbjct: 82 INPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLNAAIARTN 141 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNS-LCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P L + + + + C G+ ++ H AL D+ ++++ Sbjct: 142 SKNHSPFHTFSVLDTVSFAALTYGHTVLAKTCMIAGLEFDNQHAHSALYDAQKTAELFCH 201 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204 ++ + ++ P+++ Sbjct: 202 IVNQNTLLSTNHANLTQNDTPTNSHQTPSLT 232 >gi|224535480|ref|ZP_03676019.1| hypothetical protein BACCELL_00343 [Bacteroides cellulosilyticus DSM 14838] gi|224522946|gb|EEF92051.1| hypothetical protein BACCELL_00343 [Bacteroides cellulosilyticus DSM 14838] Length = 243 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 8/186 (4%) Query: 15 ETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDK 73 ETTG DRI+EI +++ + ++ +T + + P A +HGI D+ + D Sbjct: 2 ETTGTSINVDRIVEICYLKVHPNGNEEAKTLR--INPEMH-IPEGASAVHGIYDKDVADC 58 Query: 74 PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK 133 P+F + + + N L+ L + +D I + Sbjct: 59 PTFKEVARTIANDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDLSRRKFVDVQVIFHK- 117 Query: 134 HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFF 193 S ++ + H A D+ +V + + S++ D Sbjct: 118 ---LEQRTLSAAYKFYCGKNLEDAHTAAADTQATYEVLMAQLDRYSELQNDIAFLADYSS 174 Query: 194 KEEKKT 199 + Sbjct: 175 FNKNVD 180 >gi|254282911|ref|ZP_04957879.1| ribonuclease T [gamma proteobacterium NOR51-B] gi|219679114|gb|EED35463.1| ribonuclease T [gamma proteobacterium NOR51-B] Length = 214 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 65/186 (34%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++ D ++EI A + D T +T + P G P AL+ G Sbjct: 19 VVIDVETGGFNADTDAVLEIAATLVGMNDDGILTPKQTLCHNVEPFEGANLEPSALEFTG 78 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I E S + A + HNA FD GFINA R + Sbjct: 79 IDPESPLRDAVPEAIAFGEIFSAIRKEIREQGCNRAILVGHNAHFDAGFINAASMRADIK 138 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI + H A D+ ++++ ++ Sbjct: 139 RNPFHPFSHFDTATLAGLAYGQTVLAKACRTAGIDFDNNEAHSAAYDAAKTAELFCNIVN 198 Query: 177 GGSQIN 182 + Sbjct: 199 RWQALG 204 >gi|330829256|ref|YP_004392208.1| ribonuclease T [Aeromonas veronii B565] gi|328804392|gb|AEB49591.1| Ribonuclease T [Aeromonas veronii B565] Length = 225 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A +++ + ++ F + P G AL+ G Sbjct: 18 VVIDVETAGFNAKTDALLEIAAYTLKMDEQGWLVPDQVFHFHVEPFEGANLEKAALEFTG 77 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A +AHNA FD GF+ A +R Sbjct: 78 IDPYNPLRGAVSEKEALTEIFKGIRKGMKEQDCGRAIIVAHNATFDHGFVMAAAERAGLK 137 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C+ I ++ H AL D+ ++++ ++ Sbjct: 138 RNPFHPFATFDTAALSGLALGQTVLAKACQSARIPFDNKEAHSALYDTERTTELFCHIVN 197 Query: 177 GGSQIN 182 + Sbjct: 198 RWKSMG 203 >gi|126668711|ref|ZP_01739661.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] gi|126626811|gb|EAZ97458.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] Length = 294 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 20/25 (80%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL 35 + D+ETTGL + ND+IIE+G V++ Sbjct: 51 ILDLETTGLSAANDKIIELGLVKVR 75 >gi|119474667|ref|ZP_01615020.1| putative exonuclease [marine gamma proteobacterium HTCC2143] gi|119450870|gb|EAW32103.1| putative exonuclease [marine gamma proteobacterium HTCC2143] Length = 255 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 70/205 (34%), Gaps = 12/205 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTGL + ++IEI ++ N + P+ + S A ++HGI Sbjct: 43 VILDTETTGLS-ETAQLIEICILDFEGNILLNER----VKPSVK-VSKGAREVHGIKARD 96 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LK S+ ++ ++ + +A+NAKFD I + N L+ Sbjct: 97 LKSCRSWPDVYRDYVE--VTAGKNIVAYNAKFDRRIITQTCRAFNLTMKKRKWYCLMLAF 154 Query: 130 ARR----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + ++ + S + H A D V + + +++ Sbjct: 155 SELVGRTRYGDYKWHKLSTAAWVFDVPPNDDAHSAYGDCETTLAVAKEFLQFDPELSLPL 214 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 + +D KR Sbjct: 215 EDYKDIDSLYLLLDEKERQKSKRAN 239 >gi|330989528|gb|EGH87631.1| ribonuclease T [Pseudomonas syringae pv. lachrymans str. M301315] Length = 225 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + + T+ + P G P AL+ G Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFEGANVEPAALEFTG 92 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI R H A D+ ++++ ++ Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212 Query: 177 GGSQIN 182 ++ Sbjct: 213 RWKEMG 218 >gi|254818513|ref|ZP_05223514.1| DNA polymerase III subunit epsilon [Mycobacterium intracellulare ATCC 13950] Length = 330 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P P +HG+T L Sbjct: 19 VIDVETSGFRPGQARIISLAVLGLDADGEVEQSVVSLLNPG---VDPGPTHVHGLTAAML 75 Query: 71 KDKPSFSSIFSEFWDFF 87 +D+P F+ I + D Sbjct: 76 EDQPQFADIAPDVIDVL 92 >gi|256819216|ref|YP_003140495.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM 7271] gi|256580799|gb|ACU91934.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM 7271] Length = 1485 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 67/200 (33%), Gaps = 19/200 (9%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + D R ++I ++ + P+G + Sbjct: 2 YLIFDTETTGLPRRWDAPLTDSDNWPRAVQIAWQLHDEWGALIEHQDFLIKPDGFDVPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----- 113 A K+HGI+ + + + + + ++ + + N FD+ + AE R Sbjct: 62 AEKVHGISTQLAEAQGLPIAEVFKAFNEALSKAQYVVGQNIGFDINIMGAEFYRYGVESP 121 Query: 114 --NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSD 169 +D R L +L + + H A D + Sbjct: 122 LTQMPVIDTCTEATANLCQIAGGKGGRYKLPTLTELHSFLFGVPFAEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNE 189 + +++ G G +++ Sbjct: 182 CFFELIRRGEGFQEGTFSSD 201 >gi|153832837|ref|ZP_01985504.1| gp41 [Vibrio harveyi HY01] gi|148870971|gb|EDL69861.1| gp41 [Vibrio harveyi HY01] Length = 207 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 58/189 (30%), Gaps = 21/189 (11%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + + I+ D ETTGL S I+E A+ + P +A Sbjct: 1 MKKLSTENAIIIDTETTGLGSD-AEIVEFTAICADSGKVIVNE---LVKPTC-SIPADAT 55 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI----------------AHNAKFDVG 104 +HGIT+E +KD P F +FS + I NA + Sbjct: 56 AIHGITNEDVKDAPDFHLVFSNHFLPLLNGRPIIIYNSDFDTRLIIQSLDKHCNAAYVQS 115 Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 + + L++ C + + +S + H AL D Sbjct: 116 VHDLFFKFCIPQCAMLWYAEFFGVWNEHHEDYKWQSLSNACAQQSVDVSDLTAHRALADC 175 Query: 165 HLLSDVYIK 173 + + Sbjct: 176 EMTRRLIHA 184 >gi|304413849|ref|ZP_07395266.1| ribonuclease T [Candidatus Regiella insecticola LSR1] gi|304283569|gb|EFL91964.1| ribonuclease T [Candidatus Regiella insecticola LSR1] Length = 210 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 70/187 (37%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET+G D++ + ++EI AV ++ D T + P G ++L +G Sbjct: 20 VVIDVETSGFDAQTNALLEIAAVTLQMNDGGWLHPAETLHFHVAPFEGAILEQKSLSFNG 79 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + K + + A +AHNA FD F+ A +R Sbjct: 80 INLDNPLRGAISEHKALQTIFETVKKRMKGEGCTRAVVVAHNATFDHRFVMAAAERTGLI 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +P T A + + C GI H AL D+ + ++ +++ Sbjct: 140 KHNPFHSFVTFDTAALSALVLGQTVLAKACLEAGIDFESSQAHSALYDTKQTAKLFCELV 199 Query: 176 VGGSQIN 182 ++ Sbjct: 200 NRWKRLG 206 >gi|270290674|ref|ZP_06196898.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4] gi|270280734|gb|EFA26568.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4] Length = 178 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 56/165 (33%), Gaps = 5/165 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET I + + T+ + P + +++HGI Sbjct: 1 MNFVAIDFET--AAPARASACSIALTVVQNDQITDE-LYSLINPETK-FHWRNVQVHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++D P+F F + +AHNA FD + L+R + L + Sbjct: 57 EADVQDAPTF-PELWPILQPFFTPDQLVVAHNANFDNSVLKKTLERYELNRLPYQTLDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + LN+LC GI + H + +Y Sbjct: 116 RTSRSFFPNYPNHKLNTLCDNLGIELEHHHNALDDSLACANILLY 160 >gi|296114717|ref|ZP_06833368.1| DNA polymerase III subunit epsilon [Gluconacetobacter hansenii ATCC 23769] gi|295978751|gb|EFG85478.1| DNA polymerase III subunit epsilon [Gluconacetobacter hansenii ATCC 23769] Length = 298 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 5/48 (10%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSK-TNRTFQVFLCP 50 R I+ D+ETTGLD + D IIE+ V F+ P Sbjct: 40 RAILVDVETTGLDCEKDEIIELAMVPFFYTHFGEIVGIGAPFEGLRKP 87 >gi|210614957|ref|ZP_03290405.1| hypothetical protein CLONEX_02619 [Clostridium nexile DSM 1787] gi|210150481|gb|EEA81490.1| hypothetical protein CLONEX_02619 [Clostridium nexile DSM 1787] Length = 190 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 8/177 (4%) Query: 10 IVFDIETTGLDSK----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 IV+D+ETTGL D I+ + ++L F+ + P ++ +A ++GI Sbjct: 17 IVYDLETTGLYPFSPELGDEILSMCIMDLQGSVL----FEHYFKPEHTESWSKAAAINGI 72 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E ++++ FS E F+ + + FD F+ A I + Sbjct: 73 TPEKVENEKPFSFYRDEVQRIFDAADILITYNGIHFDDSFLEAAGIEIPDVMQFDVMLKF 132 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + + L H A D Y +MM S+ + Sbjct: 133 AWLMHEWDDYHKSWRWHKLINCAAYYNYEFPAHDATEDVRATLHCYTEMMFQKSKRS 189 >gi|307704598|ref|ZP_07641501.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK597] gi|307621843|gb|EFO00877.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK597] Length = 816 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 84/185 (45%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D +R + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIVDR-YTTDVNPH-EPLDAHIQE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMAQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|170016856|ref|YP_001727775.1| DNA polymerase III, epsilon subunit [Leuconostoc citreum KM20] gi|169803713|gb|ACA82331.1| DNA polymerase III, epsilon subunit [Leuconostoc citreum KM20] Length = 177 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 54/165 (32%), Gaps = 5/165 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M D ET + + + I + D + F + P S +HGIT Sbjct: 1 MNFTALDFET--ANHEKHSAVSIALAVVRDNQVVDE-FYSLIKPET-YFSARNTAIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + P F + ++ +AHNA FD G + L + + Sbjct: 57 AADVAQAPKF-PEIWDMIAPLFTEDKLVVAHNAAFDNGILKGTLDYYDIAEPHYMLLDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 S + + LN++ + GIT+ H + +Y Sbjct: 116 RSSRQLFPDFKNHKLNTVAQNLGITLDHHHNALDDAVAAANILIY 160 >gi|149278873|ref|ZP_01885008.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39] gi|149230492|gb|EDM35876.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39] Length = 1477 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 72/230 (31%), Gaps = 19/230 (8%) Query: 9 KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL D R I+I ++ K + P G + Sbjct: 2 YLIFDTETTGLPRNWNAPITDTDNWPRCIQIAWQLHDEFGKLVEHQDYLVKPEGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A ++HGI+ E +++ + E ++ + + N FDV + E R+ D Sbjct: 62 AERIHGISTELAEEQGISLAEVVEKFNEALSKARFVVGQNIGFDVNIMGCEFHRLGVDSP 121 Query: 119 DPSRIIDTLSIARRKHP---------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 S + + + +Y + H A D + Sbjct: 122 MSSMPVLDTCTEVTAELLKLPGGRGGKFKLPNLTELHQYLFGVPFAEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 +++++ + + + F + I + + E Sbjct: 182 CFLQLIKMEVFSVEQLQCDTNYFRVFREHNPEVIERIGLSHVNLKSASDE 231 >gi|269964031|ref|ZP_06178337.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831250|gb|EEZ85403.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 249 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + D ETTGL+++ D I+ IG V L + + + + PN N + Sbjct: 59 FVSVDFETTGLNAEEDAILTIGLVPFTLGRVQCSGSRHWVVNPNRELNEESVVIHG 114 >gi|301167502|emb|CBW27085.1| putative exonuclease [Bacteriovorax marinus SJ] Length = 963 Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 48/215 (22%), Positives = 85/215 (39%), Gaps = 15/215 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V DIETTG+D D+II++G ++ + R + + +G+ S KL GI Sbjct: 7 RWAVIDIETTGIDPSYDQIIDVGYLQFEGTTLV-RKYSSLVQYDGK-LSQFIKKLTGIDS 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L + PS+ + E D IAHNA+F+ F++ RI+ S Sbjct: 65 KMLINAPSWQVVSPEVMDV---FGHHLIAHNAEFERSFLSDHFARIDDGSGRESYEDSLY 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++ S L + I+ +H DS L V +++ + + + Sbjct: 122 FLSLLFPKMSSLKLENFI--CDWKIAEHEEHRGFQDSLDLLKV---LLIAVATVRRDVEL 176 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222 N +K + + K ++ EE+ Sbjct: 177 NATLGALFKKYNLTDYWYYKFFS-----LSDEEIA 206 >gi|229119030|ref|ZP_04248372.1| exonuclease [Bacillus cereus Rock1-3] gi|228664421|gb|EEL19920.1| exonuclease [Bacillus cereus Rock1-3] Length = 240 Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 11/144 (7%) Query: 5 NKM-----RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 NKM + ++ D ETTGL + D+IIEI ++L + P EA Sbjct: 75 NKMFINRDQFVILDTETTGL-TLRDQIIEICVIDLTGKIL----LNSLVKP-TINIPAEA 128 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGIT+E + D PS+ I+ + + + + + Sbjct: 129 ASIHGITNEMVHDAPSWIEIYIKLCEVTAGKTLLIYNAEFDLGMIESTCIANNVEFKNFK 188 Query: 120 PSRIIDTLSIARRKHPSSRNDLNS 143 + I+ + + Sbjct: 189 STCIMKMYADYVDSKRWISLSDAT 212 >gi|169347247|ref|ZP_02866186.1| exonuclease family protein [Clostridium perfringens C str. JGS1495] gi|169296643|gb|EDS78774.1| exonuclease family protein [Clostridium perfringens C str. JGS1495] Length = 302 Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 68/182 (37%), Gaps = 8/182 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG + + + + P + P + +HGI Sbjct: 1 MDFVAIDFET--ANEKRNSACSIGLTVVKNNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++++ +F+ I+ E D+ + IAHNA FD+ + L + D Sbjct: 58 PEDVENERTFNEIWEEIKDYIDG--NLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + + L ++ + G S H A D+ +++ + + + Sbjct: 116 VMAKNYYKSLPNHKLGTVSEALGFEF---SHHHAGEDARACANILLNICKDLDIESIEEL 172 Query: 187 TN 188 ++ Sbjct: 173 SD 174 >gi|168183921|ref|ZP_02618585.1| exonuclease family protein [Clostridium botulinum Bf] gi|237795808|ref|YP_002863360.1| exonuclease family protein [Clostridium botulinum Ba4 str. 657] gi|182672939|gb|EDT84900.1| exonuclease family protein [Clostridium botulinum Bf] gi|229261869|gb|ACQ52902.1| exonuclease family protein [Clostridium botulinum Ba4 str. 657] Length = 253 Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 68/207 (32%), Gaps = 15/207 (7%) Query: 7 MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNS 56 M I+FD+E + + II+IGA++L + T TF + P + Sbjct: 1 MNYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSDLN 57 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAELQRIN 114 P L +T + L +F ++ +F F N+ ++ + Sbjct: 58 PFVKNLTNLTMDSLNKANTFREVYKDFLKFLNKDKNILCIWGMTDMKELFRNIVYYELDT 117 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + + +P S N S + H A D+ ++V+ K+ Sbjct: 118 ESIPKEYINVQAYTGKYLNYPKSINVGLSNAVELFHITKNNDFHNAFNDAFYTAEVFKKI 177 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP 201 + TN ++ + Sbjct: 178 YSEKIKTKIYKPTNNSTTYRNKNTKTK 204 >gi|163839979|ref|YP_001624384.1| DNA polymerase III subunit epsilon [Renibacterium salmoninarum ATCC 33209] gi|162953455|gb|ABY22970.1| DNA polymerase III, epsilon chain [Renibacterium salmoninarum ATCC 33209] Length = 228 Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 59/202 (29%), Gaps = 3/202 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD+ETTG D + R++ V + + + + P L T Sbjct: 11 AFDVETTGRDPRQARLVSASIVLVDANNDVVESHEWLADPGVEIPEAVTLIHGISTARAR 70 Query: 71 KDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++ +E +A NA +D + AE RI +ID Sbjct: 71 AEGAPIGAVVTEVAQVLRSYFAAGTPVMAFNAPYDFTVLAAECARIGVSAPTAFPVIDPF 130 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + ++ R + I H + D+ + + +++ + Sbjct: 131 VLDKQVDGFRRGKRTLVAICEHYNIPLIDAHTSAADALATIKLAEALARRFPELSIPAEE 190 Query: 188 NEDRFFKEEKKTVPNISLLKRD 209 + + + R Sbjct: 191 LHAQQIVWAAEQAASFQEYLRR 212 >gi|326568596|gb|EGE18667.1| ribonuclease T [Moraxella catarrhalis BC7] Length = 232 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 71/211 (33%), Gaps = 16/211 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-----------NGRK 54 +V D+ET G ++ D ++EI V + + P Sbjct: 22 VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 +P++ I+++ + + HNA FD+GF+NA + R N Sbjct: 82 INPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLNAAIARTN 141 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNS-LCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P L + + + + C GI ++ H AL D+ ++++ Sbjct: 142 SKNHSPFHTFSVLDTVSFAALTYGHTVLAKTCMIAGIEFDNQHAHSALYDAQKTAELFCH 201 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204 ++ + ++ P+++ Sbjct: 202 IVNQNTLLSTNHANLTQNDTPTSPHQTPSLT 232 >gi|331266715|ref|YP_004326345.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5] gi|326683387|emb|CBZ01005.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5] Length = 830 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 8/188 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ R +V D+E T SK +II++G V + + ++ + + P+ Sbjct: 1 MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGDIIDQ-YATDVNPH-EPLDSHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+TD+ L P FS + + ++ + ++AHN +FD + L + P Sbjct: 58 ELTGLTDQRLAAAPEFSQVAGKIFELVKD--GIFVAHNVQFDANLLAEFLFFEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +L LC+ GI + H H AL D+ +++ + M + Sbjct: 116 RVDT-VELAQVLYPQFEKYNLGILCQELGIELEHA--HTALSDAQATAELLLYMRQKLFE 172 Query: 181 INFGFKTN 188 + G + Sbjct: 173 LPKGLLES 180 >gi|315641337|ref|ZP_07896413.1| exonuclease [Enterococcus italicus DSM 15952] gi|315482910|gb|EFU73430.1| exonuclease [Enterococcus italicus DSM 15952] Length = 177 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 7/167 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + + + V + D + + P +++HGI Sbjct: 1 MNFIAMDFET--ANHQRHSACSLALVMVRDSKIVGE-YYSLIQPETSFF-WRNIQIHGIK 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +K P F ++ +FN + IAHNA FD G + L N + + Sbjct: 57 PQDVKTAPKFPEVWESIAQYFNPYSLI-IAHNAPFDNGVLAGCLDYYNLEQPHYLTLDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + + LN++C I + H AL DS +++ + Sbjct: 116 RTSRKFYQNLPNHRLNTVCGYL--DIPLLNHHDALEDSRACAEILLA 160 >gi|306825581|ref|ZP_07458920.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431942|gb|EFM34919.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 830 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 8/188 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ R +V D+E T SK +II++G V + + + + P+ Sbjct: 1 MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEII-NQYATDVNPH-EPLDSHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+TD L P FS + + ++ + ++AHN +FD + L + P Sbjct: 58 ELTGLTDRRLAAAPEFSQVAGKIFELVKD--GIFVAHNVQFDANLLAEFLFFEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +L LC+ GI + H H AL D+ +++ + M + Sbjct: 116 RVDT-VELAQVLYPQFEKYNLGILCQELGIELEHA--HTALSDAQATAELLLYMRQKLFE 172 Query: 181 INFGFKTN 188 + G + Sbjct: 173 LPKGLLES 180 >gi|259046854|ref|ZP_05737255.1| DnaQ family exonuclease/DinG family helicase [Granulicatella adiacens ATCC 49175] gi|259036477|gb|EEW37732.1| DnaQ family exonuclease/DinG family helicase [Granulicatella adiacens ATCC 49175] Length = 875 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 7/176 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + V D+ETTG + DRI + G + D+ + + P + E L G+T Sbjct: 4 KYAVIDLETTGPKYEQGDRIFQFGCTLITDHKIV-EHITLNINPE-QSIPFEIQLLTGVT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ P F + ++ +AHN FD FI L+ L+ I Sbjct: 62 NADVEKAPYFDEVAMNIYNLLEG--RTLVAHNVGFDGPFIITALKEALGIELEVPFIDTV 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + L+ L I H A D+ + +++ + + Sbjct: 120 QLAQICYPSAISYRLSDLTNMLKIPH--TQVHTAGSDARATAQLFLILQEKIRSFS 173 >gi|91216470|ref|ZP_01253436.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC 700755] gi|91185264|gb|EAS71641.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC 700755] Length = 454 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 73/212 (34%), Gaps = 7/212 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIE+TG + I EI + ++ F + P + S + L GI +E Sbjct: 2 YAILDIESTGGKYNEEGITEIAIYKFDGNEIVDQ-FISLINPERKIQS-FVVGLTGINNE 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F I + + +AHNAKFD + L+ L + + T+ Sbjct: 60 MLHQAPKFYEIAKRIIE--ITEGCTIVAHNAKFDYRMLK--LEFDRLGYLYERKTLCTVK 115 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++++ P + + I +H A D+ ++ ++ + Sbjct: 116 LSKKLLPDFESYSL-GKLVKKLGIPITDRHRASGDALATVKLFKLLLEKDTDKEIISSHL 174 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + K + + + + +E Sbjct: 175 KLNAVSSIDKKLIRLIDDLPNAVGVYYFSNKE 206 >gi|332637276|ref|ZP_08416139.1| DNA-directed DNA polymerase III subunit epsilon [Weissella cibaria KACC 11862] Length = 177 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 7/163 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET ++ + + V + D + F + P K+HGIT Sbjct: 1 MNFVAMDFET--ASAQRHSAVSMALVVVRDNILVDE-FYTLIKPES-YFDARNTKIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124 + + D P F E F N IAHNA FD G + L + Sbjct: 57 EADVVDAPKF-PEVWEQIKQFYTANQLVIAHNAPFDNGVLRETLGHYGISAPHYLSLDTV 115 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 T + P+ + + + + + H + + + +L Sbjct: 116 RTSRKLYPQLPNHKLNTVADALQIDLKHHHNALDDTVAAARIL 158 >gi|114707008|ref|ZP_01439907.1| exodeoxyribonuclease X [Fulvimarina pelagi HTCC2506] gi|114537558|gb|EAU40683.1| exodeoxyribonuclease X [Fulvimarina pelagi HTCC2506] Length = 266 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 40/104 (38%), Gaps = 5/104 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF---QVFLCPNGRKNSPEALKLHGITD 67 V D ET GL + D +IEIG+V+L T F Q F P G S A ++H ITD Sbjct: 25 VIDTETAGLRLEEDAVIEIGSVDLD--LVTGAIFNPMQTFCDPGGAVISDGARRVHQITD 82 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 E L P FS F + G + Sbjct: 83 EMLVGAPPFSDAVKPFNTETYAAQRADFDRSRLRLTGRWLCTHK 126 >gi|46371957|gb|AAS90610.1| conserved hypothetical protein [uncultured soil bacterium] Length = 195 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 53/175 (30%), Gaps = 8/175 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL D +++IG ++ + + P R ++HG+T+E Sbjct: 26 FVVLDTETTGLGP-TDEVVQIGIIDSKGRTV----LNTMVRP-TRPVPSVVTRIHGLTNE 79 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + FS ++ A+N FD + + Sbjct: 80 KLAEASPFSDLYVSLSSILAGVTVI--AYNMDFDWRMLVQSAGLYGLPAFRTGDRQCAMK 137 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + H + K + LSD + + + F Sbjct: 138 AYAQGHGMFDLKRRTYAYHKLGEACRHQKIPVVQAHDALSDARMTLALVRKMAEF 192 >gi|86136890|ref|ZP_01055468.1| hypothetical protein MED193_14487 [Roseobacter sp. MED193] gi|85826214|gb|EAQ46411.1| hypothetical protein MED193_14487 [Roseobacter sp. MED193] Length = 202 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 12/191 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R I D+ET DS + I +IG V ++ R+F ++ P + +P +LHGI Sbjct: 16 RFIALDVETASRDSAS--ICQIGIACVCHDNHI---RSFTTYVNPE-QSFAPFNTELHGI 69 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + P F ++ + + ++ FD ++A + D S Sbjct: 70 DAQTVATAPRFPEAWTMLKPLLELHH---LVQHSSFDSRAVSAACRAYRMPNADLSWSDS 126 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + N + L H A D+ + V + + +F Sbjct: 127 VKIARKAWPEFKGNGGHGLANLKQELGLSFQHHDAGEDARAAAQVVL-LAENRLGQSFDL 185 Query: 186 KTNEDRFFKEE 196 + R + Sbjct: 186 ISGTTRKAQFN 196 >gi|297156451|gb|ADI06163.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis BCW-1] Length = 254 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 1/84 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG D RI+ VE+ R + P T+ Sbjct: 11 FDLETTGTDPGEARIVTAAVVEVRGGEPVGRR-EWLADPGVTIPDDAVAVHGITTEWAAA 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWI 95 + + E D Sbjct: 70 EGRPSREVADEIADVLVAHWQAGA 93 >gi|110802120|ref|YP_698713.1| DNA polymerase III subunit epsilon [Clostridium perfringens SM101] gi|110682621|gb|ABG85991.1| exonuclease family protein [Clostridium perfringens SM101] Length = 302 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 68/182 (37%), Gaps = 8/182 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG + D + + P + P + +HGI Sbjct: 1 MDFVAIDFET--ANEKRNSACSIGLTVVKDNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++++ +F+ I+ E D+ + IAHNA FD+ + L + D Sbjct: 58 PEDVENERTFNEIWKEIKDYIDG--NLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + + L ++ + G S H A D+ +++ + + + Sbjct: 116 VMAKNYYKSLPNHKLGTVSEALGFEF---SHHHAGEDARACANILLNICKDLDIESIEEL 172 Query: 187 TN 188 ++ Sbjct: 173 SD 174 >gi|189465280|ref|ZP_03014065.1| hypothetical protein BACINT_01626 [Bacteroides intestinalis DSM 17393] gi|189437554|gb|EDV06539.1| hypothetical protein BACINT_01626 [Bacteroides intestinalis DSM 17393] Length = 164 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 5/159 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 D ET + + + +G V + D + + + P S ++HG+T Sbjct: 3 NFAAIDFET--ANEQRTSVCSVGVVIVRDGEIVDN-YYSLIRPEPEYYSYWNTRVHGLTL 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P F ++ E +AHN FD + A + D D Sbjct: 60 ADTAEAPVFPVVWQEIAPLIEG--LPLVAHNKGFDESCLKAVFKTYCLDYPDYEFHCTLS 117 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + RR L+++ G + A ++ Sbjct: 118 TARRRIKGLPSYQLHTVAAYVGYELEQHHHALADAEACA 156 >gi|260583570|ref|ZP_05851318.1| DnaQ family exonuclease/DinG family helicase [Granulicatella elegans ATCC 700633] gi|260158196|gb|EEW93264.1| DnaQ family exonuclease/DinG family helicase [Granulicatella elegans ATCC 700633] Length = 873 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 9/178 (5%) Query: 7 MR--KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 M+ V D+ETTG + RI + G + + +++ P E +L Sbjct: 1 MKTSYAVVDLETTGPKFEEGGRIFQFGCSIIEQGEIVTQV-DLYINPET-TIPYEIQQLT 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 G+ + +K P F + S + + AHN FD ++ + + + Sbjct: 59 GVDKKEVKQAPYFDEVASTIFQLLEGKTFV--AHNISFDYSYLVESFRELAGIEWSAPCV 116 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L L + I + H A D++ + +++ + Q+ Sbjct: 117 DTVQLAQICYPTIESYRLQDLTQLLEIPH--QQIHSAGSDAYATAQLFLNCLEELEQL 172 >gi|296113547|ref|YP_003627485.1| ribonuclease T [Moraxella catarrhalis RH4] gi|295921241|gb|ADG61592.1| ribonuclease T [Moraxella catarrhalis RH4] gi|326559550|gb|EGE09964.1| ribonuclease T [Moraxella catarrhalis 7169] gi|326564652|gb|EGE14870.1| ribonuclease T [Moraxella catarrhalis 46P47B1] gi|326567767|gb|EGE17873.1| ribonuclease T [Moraxella catarrhalis BC1] Length = 232 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 71/211 (33%), Gaps = 16/211 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-----------NGRK 54 +V D+ET G ++ D ++EI V + + P Sbjct: 22 VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 +P++ I+++ + + HNA FD+GF+NA + R N Sbjct: 82 INPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLNAAIARTN 141 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNS-LCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P L + + + + C G+ ++ H AL D+ ++++ Sbjct: 142 SKNHSPFHTFSVLDTVSFAALTYGHTVLAKTCMIAGLEFDNQHAHSALYDAQKTAELFCH 201 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204 ++ + ++ P+++ Sbjct: 202 IVNQNTLLSTNHANLTQNDTPTSPHQTPSLT 232 >gi|188026358|ref|ZP_02961799.2| hypothetical protein PROSTU_03865 [Providencia stuartii ATCC 25827] gi|188020096|gb|EDU58136.1| hypothetical protein PROSTU_03865 [Providencia stuartii ATCC 25827] Length = 181 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/30 (53%), Positives = 21/30 (70%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M++KN+ I D+E TGLD + DRIIEI Sbjct: 1 MMQKNENNLIWIDLEMTGLDPERDRIIEIA 30 >gi|332534582|ref|ZP_08410417.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332036002|gb|EGI72481.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 236 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+S+ND I+ +G V + + + P R E++ +HGIT Sbjct: 47 FVAMDFETTGLNSQNDDIVSVGLVPFNLERIYCKHSRHWVVQP-RRNLHEESILIHGITH 105 Query: 68 EFLKDKPSFSSIFSEFWDFF 87 + D P + I + Sbjct: 106 SEVDDAPDLNQIIEPLLEAL 125 >gi|226314204|ref|YP_002774100.1| hypothetical protein BBR47_46190 [Brevibacillus brevis NBRC 100599] gi|226097154|dbj|BAH45596.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 239 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 10/131 (7%) Query: 7 MRKIVFDIETTGLDSKND---RIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ IVFD+ETT L + D IIEIGA +++ + + TFQ + P + E Sbjct: 1 MQIIVFDLETT-LTYQRDKIPEIIEIGAAKVVPGKNGVEV-DTFQRYTFPAIERRISERT 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + ++ P+F F +F + + + ++ + LD Sbjct: 59 R--KFIGLDKENMPTFIPFRRAFAEFLKWIGNDSEYYLCTWGQDDKRLMIEHCARFGLDF 116 Query: 121 SRIIDTLSIAR 131 + + + I Sbjct: 117 NWMRNYNDIQP 127 >gi|153003684|ref|YP_001378009.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] gi|152027257|gb|ABS25025.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] Length = 200 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKLHGITDE 68 D+ET GLD K+D I+ +G V + + ++ + P+ R+ P++++ H + Sbjct: 15 ALDLETGGLDPKSDPILAVGMVPIRGGAIRLAESYASLVRPDVREGIRPDSMRAHHLVPR 74 Query: 69 FLKDKPSFSSIFSEFWDFFNE 89 + + P ++ + E Sbjct: 75 DVAEAPPLETVLDQIDARIRE 95 >gi|320007769|gb|ADW02619.1| Exonuclease RNase T and DNA polymerase III [Streptomyces flavogriseus ATCC 33331] Length = 241 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 7 MRKI-----VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 M I FD+ETTG D + DRI+ V L + L P Sbjct: 1 MSWISGPLLAFDLETTGTDVETDRIVTAAVVRLEADGSVSAELTWLLDPG 50 >gi|170739695|ref|YP_001768350.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] gi|168193969|gb|ACA15916.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] Length = 222 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 59/175 (33%), Gaps = 10/175 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + D+ETTGL ++ DR++ GAV L S + P + Sbjct: 21 RLLAVDVETTGLGAE-DRVVSFGAVLLDTATLLGGSPVLACHHLIFDPGRPSHPRAEAVH 79 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 P + + +AHNA FD+GF+ E + + Sbjct: 80 GYDDWLLRHQDP--ARGHLDAVAALLAGADLVVAHNAAFDLGFLAREFRAAGRPDPARPT 137 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + RR P S + ++HGAL D+ L VY+ + Sbjct: 138 YCTMEAYRRRGEPGSSALDAVCRRVK--LARAGARHGALEDAWLALRVYLWLQGC 190 >gi|255535519|ref|YP_003095890.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium 3519-10] gi|255341715|gb|ACU07828.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium 3519-10] Length = 1567 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 60/227 (26%), Gaps = 18/227 (7%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + R+++I + P+G Sbjct: 18 YLIFDTETTGLPKNYNAPLTDSDNWPRMVQIAWQLHDRDGNLLENQDYIIKPDGYDIPFN 77 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A ++HGI+ + + + ++ HN FD AE R + D + Sbjct: 78 ASRIHGISTKMAHAEGRDLREVLIEFGEVLKKAEVVAGHNIDFDYKIAGAEYHRQSLDNI 137 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCK--------RYGITISHRSKHGALLDSHLLSDV 170 + N K H A D + + + Sbjct: 138 LEKIPSADTMELGTDYCKLGGGKNGRYKSPKLEELYTTLFNERFDEAHNAAADVNATAQI 197 Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + +MM + + E + + + Sbjct: 198 FFEMMRLRIIPSEKLRITEPELDEFIRSHPNPFRPFGIIIRRQVAAS 244 >gi|290580136|ref|YP_003484528.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025] gi|254997035|dbj|BAH87636.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025] Length = 300 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 +V DIET GLD + IIEIGAV++ F + Sbjct: 131 YVVIDIETDGLDENENSIIEIGAVKIDPSQL--EEFNYLVK 169 >gi|300214810|gb|ADJ79226.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus salivarius CECT 5713] Length = 177 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 5/175 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + + + F + P+ S +++HGIT Sbjct: 1 MNFVAIDFET--ANPKRYSACSLALTVVKNN-LIADQFYSLIKPDT-DFSWRNIQVHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ +++ PSF ++ +F N +AHNA FD + L+ + + Sbjct: 57 EKQVQNAPSFPELWPHIQNF-FTPNNLIVAHNASFDSSVLLRTLEHYDITLPHYQLLDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + + + L+++C I + H + +Y + G Q+ Sbjct: 116 RTSKKFFKDFENHKLDTICNNLNIDLKHHHNALFDSTACAEILLYQANLFGEDQL 170 >gi|226939937|ref|YP_002795010.1| DNA polymerase III subunit epsilon [Laribacter hongkongensis HLHK9] gi|226714863|gb|ACO74001.1| Probable DNA polymerase III [Laribacter hongkongensis HLHK9] Length = 202 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 9 KIV-FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++V D ETT L+ + ++ IGAV + + + + + P + Sbjct: 28 EVVSLDCETTSLNVREAELLSIGAVRIRRGRILASESLYLLVRPEHLPAPGSVVVHG 84 >gi|212636083|ref|YP_002312608.1| DNA polymerase III subunit epsilon [Shewanella piezotolerans WP3] gi|212557567|gb|ACJ30021.1| Exonuclease [Shewanella piezotolerans WP3] Length = 238 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 1/56 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLH 63 + D ETTGLD+ + II IG V R F+ P + + Sbjct: 48 FVALDFETTGLDANENSIISIGLVPFTLRRIACRQAKHWFITPEDKLKEDSIIIHG 103 >gi|172040446|ref|YP_001800160.1| hypothetical protein cur_0766 [Corynebacterium urealyticum DSM 7109] gi|171851750|emb|CAQ04726.1| hypothetical protein cu0766 [Corynebacterium urealyticum DSM 7109] Length = 239 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 16/29 (55%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK 39 D+ETTGLD K D I+ IG V + Sbjct: 45 AVDVETTGLDPKKDLILSIGWVPMTGGRI 73 >gi|291295679|ref|YP_003507077.1| Exonuclease RNase T and DNA polymerase III [Meiothermus ruber DSM 1279] gi|290470638|gb|ADD28057.1| Exonuclease RNase T and DNA polymerase III [Meiothermus ruber DSM 1279] Length = 200 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 53/180 (29%), Gaps = 8/180 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCP-NGRKNSPEALKLHGITDE 68 D+ET+GL+ +D+I+ +G V + + + P + S E ++ H I Sbjct: 18 ALDLETSGLEP-SDQILSVGMVPIRGGVIEFGAHYYSLVRPVRPQALSVEGIQAHHILPS 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P + + E + + + + L+ Sbjct: 77 ELEAAPPLAQVLDEMEQRIGQDVLILHFSSIDLSFLRQSYKTLGRPWPKPLVVDTAVLLA 136 Query: 129 IARRKHPSSRNDLNSLCKRYGITI-----SHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + G +H AL D+ +++++ + Sbjct: 137 RLNERKRWLEPHSQPYPGALGAARATFGLPGHLEHHALWDALATAELFLVLRHRLQAHTL 196 >gi|117620471|ref|YP_857153.1| ribonuclease T [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561878|gb|ABK38826.1| ribonuclease T [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 240 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 73/202 (36%), Gaps = 13/202 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A +++ + ++ F + P G AL+ G Sbjct: 39 VVIDVETAGFNARTDALLEIAAYTLKMDEQGWLVPDQIFHFHVEPFEGANLEKAALEFTG 98 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A +AHNA FD GF+ A +R Sbjct: 99 IDPFNPLRGAVSEKEALTEIFKGIRKGMKEQDCGRAIIVAHNATFDHGFVMAAAERAGLK 158 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C+ I ++ H AL D+ ++++ ++ Sbjct: 159 RNPFHPFATFDTAALSGLALGQTVLAKACQSARIPFDNKEAHSALYDTERTTELFCHIVN 218 Query: 177 GGSQINFGFKTNEDRFFKEEKK 198 + + D + + Sbjct: 219 RWKSLGGWPPAHPDEVADDASE 240 >gi|322376366|ref|ZP_08050859.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. M334] gi|321282173|gb|EFX59180.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. M334] Length = 816 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D +R + + P+ K Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIVDR-YTTDVNPH-EPLDAHIKK 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD L P FS + + +D +N ++AHN +FD + L + +P Sbjct: 58 LTGLTDRRLAQAPDFSQVARKIFDLV--ENGIFVAHNVQFDANLLAENLFFEGYELRNPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ + L LC+ GI + H H AL D+ +++ + + +Q+ Sbjct: 116 VDTVELTQVFFPE-LEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMAQL 172 Query: 182 NFGF 185 Sbjct: 173 PKEL 176 >gi|291542505|emb|CBL15615.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Ruminococcus bromii L2-63] Length = 296 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 58/175 (33%), Gaps = 10/175 (5%) Query: 7 MRKIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEA 59 M ++ D+E G L + IIEIGAV+L D TF + + P + S Sbjct: 1 MSYVILDLEWNGSYSKVLHKFVNEIIEIGAVKLDDELNVCDTFTMLVAPKIGKKLCSKVK 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKD 116 +E + SF S F DF + +A + R+ Sbjct: 61 QLTKITNEELKDEGVSFIRAISLFSDFLGDGVLMTWSDSDLHALIENYSYYTGRTRLPFL 120 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + S + L + + G+ S +H AL D +L + Sbjct: 121 SRYCNLQSYCEDCLDLHDSSCQLGLGACAEMAGVDFSEDDQHRALADVYLTLECM 175 >gi|41057226|ref|NP_958252.1| hypothetical protein VWBp10 [Streptomyces phage VWB] gi|39656049|gb|AAR29700.1| hypothetical protein [Streptomyces phage VWB] Length = 263 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 5/73 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K +M + FD+ETTG+D + DRI+ A++L T + P G + A Sbjct: 1 MWHKARM--VAFDLETTGVDVEQDRIVTAAAIDLGAEKPL--TLEWLADP-GIEIPEGAT 55 Query: 61 KLHGITDEFLKDK 73 +HGIT E ++ Sbjct: 56 AVHGITTEHAREH 68 >gi|229060993|ref|ZP_04198347.1| exonuclease [Bacillus cereus AH603] gi|228718362|gb|EEL69996.1| exonuclease [Bacillus cereus AH603] Length = 221 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 11/144 (7%) Query: 5 NKM-----RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 NKM + ++ D ETTGL + D+IIEI ++L + P EA Sbjct: 56 NKMFINRDQFVILDTETTGL-TLRDQIIEISVIDLAGKIL----LDSLVKPTTN-IPAEA 109 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGIT+E + D PS+++I+ E + + + + Sbjct: 110 ASIHGITNEMVHDAPSWTAIYKELREVTVGKTLLIYNAEFDLGMIENTCIANNVEFKNFK 169 Query: 120 PSRIIDTLSIARRKHPSSRNDLNS 143 + I++ + Sbjct: 170 STCIMEMYVDYVDSKRWISLSDAT 193 >gi|294632065|ref|ZP_06710625.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] gi|292835398|gb|EFF93747.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] Length = 240 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 FD+ETTG D + RI+ +E+ D R + P G P+A+ +HGI Sbjct: 11 FDLETTGTDPRTARIVTAAVIEVRDGEPAGRR-EWLADP-GVPIPPDAVAVHGI 62 >gi|218709810|ref|YP_002417431.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32] gi|218322829|emb|CAV19006.1| DNA polymerase III polC-type [Vibrio splendidus LGP32] Length = 238 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+ D II IG V L+ + L P +K +++ +HGIT Sbjct: 48 FLAVDFETTGLNPNKDGIITIGLVPFTLNRIYLRQAKHWTLRPK-QKLEEDSVVIHGITH 106 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEW 94 + D P S + E + Sbjct: 107 NDIIDAPDLSEVLDEILESMGGHIPVV 133 >gi|146386891|pdb|2IS3|A Chain A, Crystal Structure Of Escherichia Coli Rnase T gi|146386892|pdb|2IS3|B Chain B, Crystal Structure Of Escherichia Coli Rnase T gi|146386893|pdb|2IS3|C Chain C, Crystal Structure Of Escherichia Coli Rnase T gi|146386894|pdb|2IS3|D Chain D, Crystal Structure Of Escherichia Coli Rnase T Length = 215 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKXDEQGWLXPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F A +R + Sbjct: 80 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIXVAHNANFDHSFXXAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L+ C+ G H AL D+ + ++ +++ Sbjct: 140 RNPFHPFATFDTAALAGLALGQTVLSKACQTAGXDFDSTQAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|145299434|ref|YP_001142275.1| ribonuclease T [Aeromonas salmonicida subsp. salmonicida A449] gi|142852206|gb|ABO90527.1| ribonuclease T [Aeromonas salmonicida subsp. salmonicida A449] Length = 223 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A +++ + ++ F + P G AL+ G Sbjct: 18 VVIDVETAGFNARTDALLEIAAYTLKMDEDGWLAPDQVFHFHVEPFEGANLEKAALEFTG 77 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A +AHNA FD GF+ A +R Sbjct: 78 IDPFNPLRGAVSEKEALTEIFKGIRKGMKESDCNRAIIVAHNATFDHGFVMAAAERAGLK 137 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C+ I ++ H AL D+ ++++ ++ Sbjct: 138 RNPFHPFATFDTAALSGLALGQTVLAKACQSARIPFDNKEAHSALYDTERTTELFCHIVN 197 Query: 177 GGSQIN 182 + Sbjct: 198 RWKSLG 203 >gi|322392254|ref|ZP_08065715.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus peroris ATCC 700780] gi|321144789|gb|EFX40189.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus peroris ATCC 700780] Length = 823 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-EQYATDVNPHEH-LDSHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + ++ + ++AHN +FD + L + P L Sbjct: 64 KRLAKAPEFSQVAGKIFELVKD--GIFVAHNVQFDANLLAEFLFFEGYELRTPRIDTVEL 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + + +L LC+ GI H AL D+ +++++ M Q+ G Sbjct: 122 AQVFYPQ-LEKYNLGILCQELGIP--LEQAHTALSDAQATAELFLCMRQKMFQLPKGL 176 >gi|168206308|ref|ZP_02632313.1| exonuclease family protein [Clostridium perfringens E str. JGS1987] gi|170662180|gb|EDT14863.1| exonuclease family protein [Clostridium perfringens E str. JGS1987] Length = 302 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 55/164 (33%), Gaps = 3/164 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG + + + + P + P + +HGI Sbjct: 1 MDFVAIDFET--ANEKRNSACSIGLTVVKNNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++++ +F+ I+ E D+ + V + I + + + Sbjct: 58 PEDVENERTFNEIWEEIKDYIDGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVM 117 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + P+ + S + + H + + LL+ Sbjct: 118 AKNYYKSLPNHKLGTVSEALGFEFSHHHAGEDARACANILLNIC 161 >gi|319760755|ref|YP_004124692.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC] gi|317115316|gb|ADU97804.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC] Length = 209 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 5/115 (4%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ ++ R E+ V + +R F + G P +L GIT+ Sbjct: 7 VIDFETTGMTPAQGARATEVAIVLMEGERVVDR-FASLMK-TGVWIPPFITRLTGITNAM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + P+ + E F + AHNA FD F +EL+ D P Sbjct: 65 VDAAPAAEPVMREAARFVGDAPMV--AHNAAFDSRFWQSELRHAGLDAPHPFACT 117 >gi|157145913|ref|YP_001453232.1| ribonuclease T [Citrobacter koseri ATCC BAA-895] gi|166228562|sp|A8AH33|RNT_CITK8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|157083118|gb|ABV12796.1| hypothetical protein CKO_01664 [Citrobacter koseri ATCC BAA-895] Length = 215 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++E+ A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A +AHNA FD F+ A +R + Sbjct: 80 IDPSNPLRGAVSEYDALHAIFKMVRKGIKDSGCNRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGTQAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|167032729|ref|YP_001667960.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida GB-1] gi|166859217|gb|ABY97624.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida GB-1] Length = 203 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 8/130 (6%) Query: 11 VFDIETTGLD--------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 VFD ETTG I++I A+ + +F+ + P+G E + Sbjct: 7 VFDTETTGFPNFKAPSDHPDQPHIVDICALLYTPEGELVDSFEAMVRPDGWSIPNEVAVI 66 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGIT+E + ++ E + Q +AHN FD + L+R + + Sbjct: 67 HGITNELALEHGIPEALAIEGFLNIWNQAGLRVAHNVSFDDRIMRIALKRFQDAWVAETF 126 Query: 123 IIDTLSIARR 132 + Sbjct: 127 RDSPKFCTCQ 136 >gi|332361545|gb|EGJ39349.1| DNA polymerase III [Streptococcus sanguinis SK1056] Length = 814 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG + + T +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIALIENGIIT-KTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ + A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELIQD--AIFVAHNVKFDANLLAEALFWEGFDLLTPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L+ + L +LC IS + H AL D+ + +++K+ + Sbjct: 116 VDTVELAQVFYPT-FDKYSLGNLCGLL--DISLENAHTALADAQATAQLFLKIQDKIKSL 172 Query: 182 NFGF 185 Sbjct: 173 PKAL 176 >gi|192362510|ref|YP_001983050.1| ribonuclease T [Cellvibrio japonicus Ueda107] gi|190688675|gb|ACE86353.1| ribonuclease T [Cellvibrio japonicus Ueda107] Length = 223 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 13/200 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G +++ D ++EI AV + + + TF + P G AL G Sbjct: 24 VIVDVETGGFNAQTDALLEIAAVTIRMDEDGFLHRHETFAFQVEPFEGANIEQAALDFTG 83 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + S A + HNA FD+GF+NA ++R N Sbjct: 84 IDPDSPDRIAEPELMVMTDLFSAVRRAVKESGCTRAVMVGHNAHFDLGFVNAAVERCNIK 143 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L CK GI S+ + H A D+ +D++ ++ Sbjct: 144 RNPFHPFSVFDTATLAGLAFGQTVLAKACKTAGIEFSNSAAHCAAYDAEKTADLFCLIVN 203 Query: 177 GGSQINFGFKTNEDRFFKEE 196 + ++++ E Sbjct: 204 RWQTLGGWCASDDELDEDAE 223 >gi|23098512|ref|NP_691978.1| hypothetical protein OB1057 [Oceanobacillus iheyensis HTE831] gi|22776738|dbj|BAC13013.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 195 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 71/172 (41%), Gaps = 9/172 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ET + K + +G V +++ ++ F + P S + +HGIT+ Sbjct: 3 KFAAIDFET--ANEKRNSACSVGVV-IMNDTEIIDEFYTLINPLASFRS-GNVFIHGITE 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ P+F+ ++ + + IAHNA FD+ + L + + + + + Sbjct: 59 EQVQEAPTFAELWPTLSAYLED--TILIAHNASFDMSVLRQSLNKYDIPCPNYTSLCTVK 116 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + L+++ +G + H A+ D+ + +++ + Sbjct: 117 ISRLIWPQLENHKLHTVANHHG---IALNHHHAMDDARASAKIFLASLAEQK 165 >gi|148980340|ref|ZP_01816006.1| DNA polymerase III, epsilon subunit [Vibrionales bacterium SWAT-3] gi|145961282|gb|EDK26593.1| DNA polymerase III, epsilon subunit [Vibrionales bacterium SWAT-3] Length = 238 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITD 67 IV D+ETTGLDS+ D I+ +G V+++ + ++L + + N+ A+ H Sbjct: 51 YIVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAKHIYLNNDSQINAETAVINHITPQ 110 Query: 68 E 68 Sbjct: 111 M 111 >gi|86146291|ref|ZP_01064616.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222] gi|85836002|gb|EAQ54135.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222] Length = 238 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+ D II IG V L+ + L P +K +++ +HGIT Sbjct: 48 FLAVDFETTGLNPNKDGIITIGLVPFTLNRIYLRQAKHWTLRPK-QKLEEDSVVIHGITH 106 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEW 94 + D P S + E + Sbjct: 107 NDIIDAPDLSEVLDEILESMGGHIPVV 133 >gi|71066188|ref|YP_264915.1| ribonuclease T [Psychrobacter arcticus 273-4] gi|71039173|gb|AAZ19481.1| RNAse T [Psychrobacter arcticus 273-4] Length = 239 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 66/204 (32%), Gaps = 16/204 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-----------NGRK 54 +V D+ET G +++ D ++EI + + ++ + P Sbjct: 36 VVVDVETAGFNAQTDALLEIACIPVLMNEQGVFYPGEALNAHIEPFEGANLEPSALAFTG 95 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P I ++ E + + I HNA FD+ F+NA + R N Sbjct: 96 IDPNNPLRKAIAEDEKTALRRIFKGLKEVRRNEDCRQCVLIGHNAHFDLAFLNAAVLRTN 155 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P + + + CK G+ H AL D+ ++++ Sbjct: 156 NKSHNPFHNFSVFDTVTLSALAFGQTVLARACKAAGLDFDGNDAHSALYDTQKTAELFCY 215 Query: 174 MMVGGSQINFGFKTNEDRFFKEEK 197 ++ + + + K Sbjct: 216 ILNNYPMLANAMHSEPETAADNNK 239 >gi|270295360|ref|ZP_06201561.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274607|gb|EFA20468.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 163 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 6/161 (3%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+ D ET + + + +G V + D + + P + ++HG+ Sbjct: 1 MKDFAAIDFET--ANEQRTSVCSVGVVIVRDGEIV-DHYYNLIRPEPEYYTYWNTRVHGL 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T +D P F ++ E +AHN FD + A + D D Sbjct: 58 TLADTRDAPIFPVVWQEIAPRIEG--LPLVAHNKAFDESCLKAVFRTYCMDYPDYEFHCT 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + R L+++ G + A ++ Sbjct: 116 LQTSRRVLKGLPNYQLHTVAACCGYQLEQHHHALADAEACA 156 >gi|161507623|ref|YP_001577577.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus DPC 4571] gi|160348612|gb|ABX27286.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus DPC 4571] Length = 927 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 7/169 (4%) Query: 9 KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K II+ G + + +T+ + P+ + + L GI + Sbjct: 10 FAVVDLETTGTQREKGHHIIQFGCAIIKNMKVV-KTYSFMINPH-HEIPQSVVNLTGIHN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIID 125 E ++ K FS + + ++AHN FD+ F+N EL + + L ++ Sbjct: 68 EDVQGKDDFSVYAPKIIEILKG--TVFVAHNVDFDLPFLNYELVQHGYEALTNKAIDTVE 125 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IA PS + + + H++ A + LL + K+ Sbjct: 126 LAKIAFPTLPSYKLSDLTAQLKIKHLNPHKADSDAYGTAVLLIKIIHKL 174 >gi|87121336|ref|ZP_01077226.1| ribonuclease T [Marinomonas sp. MED121] gi|86163493|gb|EAQ64768.1| ribonuclease T [Marinomonas sp. MED121] Length = 216 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 74/186 (39%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A + + + + + T + + P G AL+ G Sbjct: 14 VVIDVETAGFNNKTDALLEIAASILRMDENGELYIHETIEFNVRPFEGANLEKSALEFTG 73 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + K S + + A + HNA FD GF+NA ++R + Sbjct: 74 IDPFDPERKDVVEAEVLGQIFSKVRKELKSVGCKRAILVGHNAAFDHGFLNAAIERCDIK 133 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + + L C+ I S+ H A D+ ++++ +++ Sbjct: 134 RNPFHPFSSFDTASLAGLAFGQTVLAKACEAAAIPFSNAEAHSAKYDTEKTAELFCEIVN 193 Query: 177 GGSQIN 182 ++ Sbjct: 194 RWKRLG 199 >gi|254419026|ref|ZP_05032750.1| exonuclease family [Brevundimonas sp. BAL3] gi|196185203|gb|EDX80179.1| exonuclease family [Brevundimonas sp. BAL3] Length = 476 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCPNGRKNSPEA 59 M + +D ETTGL D+I++ A+ F+ L P+ + Sbjct: 1 MGFVFYDTETTGLSKGFDQIVQFAAIHTDGDLNELDRFELRCRLQPHVVPHPKAM 55 >gi|83814553|ref|YP_445082.1| exonuclease, putative [Salinibacter ruber DSM 13855] gi|83755947|gb|ABC44060.1| exonuclease, putative [Salinibacter ruber DSM 13855] Length = 249 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPN 51 + FD+E TG D + RII+IG + D + + T V + P Sbjct: 9 VFFDLEATGTDPQAARIIQIGMQRFVPSGDGAALDETIDVLVDPQ 53 >gi|34540075|ref|NP_904554.1| exonuclease [Porphyromonas gingivalis W83] gi|34396386|gb|AAQ65453.1| exonuclease [Porphyromonas gingivalis W83] Length = 163 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 63/167 (37%), Gaps = 7/167 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D ET +++ + +G + + +R + + P + ++HG+T Sbjct: 4 FAAIDFET--ANAERTSVCSVGIIVVRGGQIVHR-YYSLIRPEPDYYNYHNTRVHGLTAA 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + F +++E +AHN FD G + A + D D + Sbjct: 61 DTESARIFPDVWAEVEPLIAG--LPLVAHNKPFDEGCLKAVFRMYRMDYPDYPFFCTLQA 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R+ S + L ++ + G + H AL D+ + + +K++ Sbjct: 119 ARRQLRHLSDHRLPTVAQCCG--YTLAQHHQALADAEACAAIALKLL 163 >gi|228477577|ref|ZP_04062210.1| DnaQ family exonuclease/DinG family helicase [Streptococcus salivarius SK126] gi|228250721|gb|EEK09919.1| DnaQ family exonuclease/DinG family helicase [Streptococcus salivarius SK126] Length = 828 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 75/181 (41%), Gaps = 8/181 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M KN + + D+E T S II++G V + + + F + P+ ++ + Sbjct: 1 MSEKNTNKYAIVDLEATSASS-TASIIQVGIVIMQNGQVIDE-FASDVNPH-QELDDHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I ++ + ++AHN KFD + + Sbjct: 58 HLTGITDQQLAQAPDFSEIARTIFELIED--CIFVAHNVKFDANLLA--EALFMEGFELR 113 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +DT+ +A+ +P+ S + + + H A+ D+ + +M + Sbjct: 114 TPRVDTVELAQVFYPTLEQYKLSHLSKV-LNLDLAQAHTAIEDARATGQLLFHLMDKITS 172 Query: 181 I 181 + Sbjct: 173 L 173 >gi|325989695|ref|YP_004249394.1| DNA polymerase III polC-type [Mycoplasma suis KI3806] gi|323574780|emb|CBZ40440.1| DNA polymerase III, polC-type [Mycoplasma suis] Length = 1438 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 +FD+ETTGL+ D IIEI ++ + + + Sbjct: 396 IFDLETTGLNPIFDEIIEIFVLKYSSGTVI-DHYYSLIR 433 >gi|325973260|ref|YP_004250324.1| DNA polymerase III PolC [Mycoplasma suis str. Illinois] gi|323651862|gb|ADX97944.1| DNA polymerase III, PolC [Mycoplasma suis str. Illinois] Length = 1438 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 +FD+ETTGL+ D IIEI ++ + + + Sbjct: 396 IFDLETTGLNPIFDEIIEIFVLKYSSGTVI-DHYYSLIR 433 >gi|332977795|gb|EGK14553.1| DNA-directed DNA polymerase III epsilon subunit [Psychrobacter sp. 1501(2011)] Length = 201 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 61/170 (35%), Gaps = 4/170 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + + D E TGL+ K D ++ I A+ + ++ + +C + E + +HG+ Sbjct: 32 KWVAIDCEMTGLNPKKDHLLSIAAIHINGSNIQSGQGLH-LICRPPVMPTKETIVIHGLR 90 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH--NAKFDVGFINAELQRINKDPLDPSRII 124 +++ S+ + F + + + F + + +P+ R + Sbjct: 91 PIDVENGLSYEQMLERLLPFIDNRPIVGYCPQLDMGFLNKISKSYMGTALPNPIIDIRDL 150 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R S + + + H A D+ + + V++ + Sbjct: 151 YNRYSGNRTQGISHQAQQLSSIATQLQLPELAAHDAYNDALMTAMVFLHL 200 >gi|329956618|ref|ZP_08297191.1| DNA polymerase III, epsilon subunit family protein [Bacteroides clarus YIT 12056] gi|328523990|gb|EGF51066.1| DNA polymerase III, epsilon subunit family protein [Bacteroides clarus YIT 12056] Length = 163 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 5/159 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 D ET + + + +G V + D + + + P + ++HG+T Sbjct: 3 NFAAIDFET--ANEQRTSVCSVGVVIVRDGEIVDN-YYSLIRPEPEYYTYWNTRVHGLTL 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 P F +++ E +AHN FD + A + D D Sbjct: 60 ADTACAPVFPTVWQEIAPRIEG--LTLVAHNKAFDESCLKAVFRTYGMDYPDYDFRCTLQ 117 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + R L+++ G + A ++ Sbjct: 118 ASRRAIKGLPDYQLHTVAAWCGYRLEQHHHALADAEACA 156 >gi|300770507|ref|ZP_07080386.1| DNA-directed DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] gi|300762983|gb|EFK59800.1| DNA-directed DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 203 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 65/200 (32%), Gaps = 11/200 (5%) Query: 9 KIVFDIE--TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 I D E T + + + +G V + T+ F + P + + ++HGI Sbjct: 6 FIAIDFELAT----AAYNSVCSVGIVRVDQGVITDE-FYSLVKPPKNEYMWQTTRVHGIK 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D P+F I+ + D + +V + ++ L + + Sbjct: 61 PKDTADAPTFEEIYPKIKDLLQNRKMVAHNEKFDREVLSKTMKACGLDYRELHLPVMWEC 120 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS----DVYIKMMVGGSQIN 182 S R + LN C+ GI ++H + L +V +++ Sbjct: 121 TSKIYRDKGFKKTKLNLCCEIMGIDLNHHEALSDAKAAAFLYLKQNEVTQELLDRVFPAE 180 Query: 183 FGFKTNEDRFFKEEKKTVPN 202 ++ K E + Sbjct: 181 ELLIQPDEIAKKSESHNGSD 200 >gi|220913226|ref|YP_002488535.1| DNA polymerase III subunit epsilon [Arthrobacter chlorophenolicus A6] gi|219860104|gb|ACL40446.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter chlorophenolicus A6] Length = 236 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 62/214 (28%), Gaps = 3/214 (1%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M N + + FD+ETTG +S+ RI+ + + R + P + + Sbjct: 1 MSTWNTLPRAAFDLETTGRNSRAARIVTASVTVVDHRGEVIREHEWLADPGVEIPTEASD 60 Query: 61 KLHGITDEFLKDKPSFSSIFSEFW---DFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 T++ KD + E + IA NA +D + AE R Sbjct: 61 VHGVTTEQARKDGRPAHEVTRELAAVLQELFDTGVPVIAFNASYDFTVLAAESARYGVPQ 120 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L ++D + ++ + + + H + D+ V M Sbjct: 121 LTRFPVLDPYIMNKQVDRYRKGKRTLTALCEEYGVVLDNAHTSAADALATLKVLDAMAGK 180 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 ++ + R Sbjct: 181 FPKLMMPASQLHQLQVDWAVTQAADFQGYLRKTK 214 >gi|148239379|ref|YP_001224766.1| DNA polymerase III epsilon subunit [Synechococcus sp. WH 7803] gi|147847918|emb|CAK23469.1| DNA polymerase III epsilon subunit [Synechococcus sp. WH 7803] Length = 272 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 10/167 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++ D ETTGLD+ D+ +E+GA+ + + + L N EA+ Sbjct: 43 RLLIVDTETTGLDADRDQCLELGAILFSIPHRQVLAQMSCLL--PVDHNPAEAINRIPAE 100 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L +++ +AHNA FD + + + ++ Sbjct: 101 VSRLDQP---WGDGLAWFERMMASADYLVAHNAAFDRQWFGRG--SLPEATRPWLCTLED 155 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + ++ +R + L YGI + H AL D L++V+ + Sbjct: 156 VRWPEARNLRARPSVIDLALAYGIPVWSA--HRALTDCMYLAEVFQR 200 >gi|282880819|ref|ZP_06289515.1| DNA polymerase III subunit epsilon domain protein [Prevotella timonensis CRIS 5C-B1] gi|281305353|gb|EFA97417.1| DNA polymerase III subunit epsilon domain protein [Prevotella timonensis CRIS 5C-B1] Length = 183 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 61/167 (36%), Gaps = 9/167 (5%) Query: 8 RKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 I D ET TG K + E G + D T + P S +++HGI Sbjct: 5 NFIAIDFETATG---KRASVCEAGICVVKDGKIV-ETKSWLIRPEDNAYSYWNIQIHGIH 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++ PSF ++ E + E +AHNA FD+ I L+ + D LD Sbjct: 61 PEDTENAPSFPCVWQEILTYLKE-TPILVAHNAAFDISCIRKSLELYHLDTLDVDYYCTL 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + I + H A D+ + + ++++ Sbjct: 120 RAARHHYDFECHTL---GYLCEQFEIPEGTHHRAGDDAEMCARLFLR 163 >gi|269103713|ref|ZP_06156410.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268163611|gb|EEZ42107.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 237 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 7/171 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITD 67 +V D ETTG D + D I+ +G V + T ++ + + +K PE ++ IT Sbjct: 52 YLVLDFETTGFDPEQDDILSVGFVTISQQRIDLSTATELLIKDSQQKVKPETAIINHITT 111 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L + ++ +AH A + F+N L + P P +DTL Sbjct: 112 EKLAHGVELDCAMAALFNAMKG--KIMVAHGAMIEQRFLNHYLATRYQLPPLPIIWLDTL 169 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISH----RSKHGALLDSHLLSDVYIKM 174 +I + + + + I H HGA++D+ +++ + + Sbjct: 170 TIEKSLSIHRQQLKANDYRLAQIRQRHGLPAYPAHGAVIDAIATAELLLVL 220 >gi|258647163|ref|ZP_05734632.1| exonuclease [Prevotella tannerae ATCC 51259] gi|260853133|gb|EEX73002.1| exonuclease [Prevotella tannerae ATCC 51259] Length = 163 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 5/149 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D ET + + IG V + + +F + P ++HG+ Sbjct: 4 FAAIDFET--ANQARSSVCSIGLVVVRGGEQV-DSFYALIRPEPNYYCYWNSRIHGLRQS 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P FS +++E +AHN +FD G + A Q D D + + + Sbjct: 61 DTENAPVFSKVWTEIAPLIEG--LPLVAHNCRFDQGCLKAVFQVYQMDYPDYTFLDTLTA 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSK 157 + L+++ G + Sbjct: 119 ARHALPHLDNHQLHTVAAACGYQLEQHHH 147 >gi|238895034|ref|YP_002919768.1| ribonuclease T [Klebsiella pneumoniae NTUH-K2044] gi|238547350|dbj|BAH63701.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 197 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 13/177 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ ++ ++ + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + + A +AHNA FD F +R Sbjct: 80 INPHDPQRGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + A + L+ C G+ + + + Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACIAAGMPFDGAQLTPPCMIPSRRRSCFAR 196 >gi|126665477|ref|ZP_01736459.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] gi|126630105|gb|EBA00721.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] Length = 245 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 4/137 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL + II +G V L+ + + + P + ++ +HGIT Sbjct: 56 VAIDFETTGLSATEHSIISVGLVPFTLEGIQLSAARHWLVKPKLALH-QTSVTIHGITHA 114 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P I E + + H + F++ L+ ++ + + Sbjct: 115 DLEQAPDLVDILPELLECLAG--RLPVVHYRDIERPFLDVALRHRLQEGIQFPLLDTMAI 172 Query: 129 IARRKHPSSRNDLNSLC 145 A + Sbjct: 173 EAHLHPDRRPTFWQTWR 189 >gi|330991910|ref|ZP_08315859.1| DNA polymerase III polC-type [Gluconacetobacter sp. SXCC-1] gi|329760931|gb|EGG77426.1| DNA polymerase III polC-type [Gluconacetobacter sp. SXCC-1] Length = 309 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 5/52 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL---DYSKTN--RTFQVFLCPNGRKNSP 57 D+ETTGL + D IIE G V + + F P+ Sbjct: 57 FLDLETTGLSAAKDEIIEFGIVPFVYTLEGKILGTLEPFSRLREPSCPIPPQ 108 >gi|330822675|ref|YP_004385978.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601] gi|329308047|gb|AEB82462.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601] Length = 209 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 5/115 (4%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ ++ R E+ V + +R F + G P +L GIT+ Sbjct: 7 VIDFETTGMTPAQGARATEVAIVLMEGERVVDR-FASLMK-TGVWIPPFITRLTGITNAM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + P+ S+ E F + AHNA FD F +EL+ D P Sbjct: 65 VDAAPAAESVMREAARFVGDAPMV--AHNAAFDSRFWQSELRHAGLDAPHPFACT 117 >gi|289207535|ref|YP_003459601.1| ribonuclease T [Thioalkalivibrio sp. K90mix] gi|288943166|gb|ADC70865.1| ribonuclease T [Thioalkalivibrio sp. K90mix] Length = 228 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 71/183 (38%), Gaps = 13/183 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D + ++++ AV L D+ +RT + + P G + P++L+++G Sbjct: 24 VVVDVETGGFDCRRHALLQVAAVFLRRDENDHLVRDRTVSLHVRPYEGSEMDPKSLEVNG 83 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + S + + A + HNA FD+GF++ +R Sbjct: 84 IDPYHPLRAAYPEDQAMGRLFSEVRREVKINHCKRAILVGHNAHFDLGFVHTAAERCGIK 143 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +++ + L G+ + H A D+ +D++ ++ Sbjct: 144 RNPFHPFSSLDTVSLAALAFGQTVLARAADAAGLGWDAEAAHSAAFDAEKTADIFCQIAN 203 Query: 177 GGS 179 Sbjct: 204 RWQ 206 >gi|262283016|ref|ZP_06060783.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp. 2_1_36FAA] gi|262261268|gb|EEY79967.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp. 2_1_36FAA] Length = 818 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 5/106 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D+E TG S +II++G V L D + +T+Q + P+ +L G++ Sbjct: 1 MKYAIVDLEATGTGS-TAKIIQVGIVILEDG-EIKQTYQTDINPHEALE-EHIKQLTGLS 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 D+ L P FS + E ++ + A ++AHN KFD + L Sbjct: 58 DQRLSQAPDFSQVAREIYELIED--AVFVAHNVKFDANLLAESLFW 101 >gi|149926412|ref|ZP_01914673.1| Exonuclease [Limnobacter sp. MED105] gi|149824775|gb|EDM83989.1| Exonuclease [Limnobacter sp. MED105] Length = 244 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 64/179 (35%), Gaps = 14/179 (7%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D+E++GL+ K DR+I + A ++ TF+V + + Sbjct: 36 RWVVLDVESSGLNPKKDRLISVAATAIVFDAQRRPRISLTDTFEVVIKQPPEIVDMIEFE 95 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFF------NEQNAEWIAHNAKFDVGFINAELQRINK 115 + + + + ++ IA ++ FD IN L+++ Sbjct: 96 AIDKNNILIHGIGIGAQQKGVKAEVALSEFLRYVGHSPLIAFHSWFDEILINKALRKVLG 155 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + A + + L+ +RYGI +H A D + + +K+ Sbjct: 156 RTTHRHWLDLEHLAAVLHKENHQLPLDVWMQRYGIEC--EQRHQAAADVLATAQLLMKL 212 >gi|330446493|ref|ZP_08310145.1| ribonuclease T [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490684|dbj|GAA04642.1| ribonuclease T [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 218 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L + K T + P G + EAL+ +G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVAPFEGAILNKEALEFNG 79 Query: 65 ITDEF---------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + A +AHNA FD F+ A +R Sbjct: 80 IRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHSFVMAASERAKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + A + L C+ I +R H AL D+ ++++ +++ Sbjct: 140 KRNPFHPFATFDTAALSGLAFGQTVLAKACQTANIPFDNREAHSALYDTERTAELFCEIV 199 Query: 176 VGGSQIN 182 ++ Sbjct: 200 NKWKKLG 206 >gi|121997525|ref|YP_001002312.1| ribonuclease T [Halorhodospira halophila SL1] gi|121588930|gb|ABM61510.1| RNAse T [Halorhodospira halophila SL1] Length = 226 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 69/184 (37%), Gaps = 14/184 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-----QVFLCP-NGRKNSPEALKLH 63 +V D+ET GL ++ D +++I AV L T R + + P G + P+AL+L+ Sbjct: 34 VVVDVETGGLQAETDALLQIAAVILRAEEGTGRLYPAETHTCHVQPFEGARIDPKALELN 93 Query: 64 GITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 GI E + + A + HNA FD+ F+NA + R Sbjct: 94 GIDPEHPLRMAVPERDALGKMFNPVRQELRNTGCNRAVLVGHNAFFDLAFLNAAVTRTGF 153 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + L K GI + H A+ D+ ++++ ++ Sbjct: 154 KRNPFHPFSSFDTATLGGLAYGQTVLAKAVKAAGIEWDAKEAHSAIYDAEKTAELFCAIV 213 Query: 176 VGGS 179 Sbjct: 214 NCWD 217 >gi|18310383|ref|NP_562317.1| DNA polymerase III subunit epsilon [Clostridium perfringens str. 13] gi|18145063|dbj|BAB81107.1| probable DNA polymerase III epsilon chain [Clostridium perfringens str. 13] Length = 302 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 3/164 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG + D + + P + P + +HGI Sbjct: 1 MDFVAIDFET--ANEKRNSACSIGLTVVKDNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++++ +F+ I+ E D+ + V + I + + + Sbjct: 58 PEDVENERTFNEIWEEIKDYIDGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVM 117 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + P+ + S + + H + + LL+ Sbjct: 118 AKNYYKSLPNHKLGTVSEALDFEFSHHHAGEDARACANILLNIC 161 >gi|188579669|ref|YP_001923114.1| exonuclease RNase T and DNA polymerase III [Methylobacterium populi BJ001] gi|179343167|gb|ACB78579.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi BJ001] Length = 297 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 70/211 (33%), Gaps = 8/211 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + + D +G + R + P + SP +++HGI Sbjct: 1 MSVVAIDFET--ANERRDSACAVGLAWIEGGRVVRRE-TRLIRPPQMRFSPGNIRIHGIL 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D P+F +F+EF A +AHNA FD+G + A L + D + Sbjct: 58 PADVRDAPTFPEVFAEFRPDLTG--ALLLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 R + + L K G H A D+ +++ + + + Sbjct: 116 QIARRIFPDPAGHGL---AKVAGRLGIRFEHHDAGEDAFACAEIALAALRETGAADIADL 172 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 P + R + Sbjct: 173 ARGLGLMPIRAVAGPRRDFTRSTSAHALRAS 203 >gi|300858320|ref|YP_003783303.1| hypothetical protein cpfrc_00902 [Corynebacterium pseudotuberculosis FRC41] gi|300685774|gb|ADK28696.1| hypothetical protein cpfrc_00902 [Corynebacterium pseudotuberculosis FRC41] gi|302206036|gb|ADL10378.1| Putative DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis C231] gi|302330589|gb|ADL20783.1| Putative DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis 1002] gi|308276273|gb|ADO26172.1| Putative DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis I19] Length = 203 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 57/177 (32%), Gaps = 5/177 (2%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALK 61 + +K R + D+ETT L +I+ IG V + D VF+ ++ Sbjct: 25 KNDKTRFLAVDMETTALLPTKGKILSIGWVPIEDGRVQLADAGHVFIRSENLEHDSVGNS 84 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 S + + + +AH A ++ F +A +R PL Sbjct: 85 AALHNITDTMLAEGESEHSAMEMLLSSLRGRVLLAHFAPIELRFGDAACRRHFGAPLRVP 144 Query: 122 RIIDTLSIARRKHPSSRNDLNS----LCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + R R + H H AL D+ +++Y+ + Sbjct: 145 YVDTMELERRHMERMGTYPRGEDLRLARVRKRYGLPHYRSHNALTDALACAELYLAL 201 >gi|188994191|ref|YP_001928443.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis ATCC 33277] gi|188593871|dbj|BAG32846.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis ATCC 33277] Length = 163 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 62/167 (37%), Gaps = 7/167 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D ET +++ + +G + + +R + + P + ++HG+T Sbjct: 4 FAAIDFET--ANAERTSVCSVGIIVVRGGEIVHR-YYSLIRPEPDYYNYHNTRVHGLTAA 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + F +++E +AHN FD G + A + D D + Sbjct: 61 DTESARIFPDVWAEVEPLIAG--LPLVAHNKPFDEGCLKAVFRMYRMDYPDYPFFCTLQA 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R+ S + L ++ + G H AL D+ + + +K++ Sbjct: 119 ARRQLRHLSDHRLPAVAQCCG--YILAQHHQALADAEACAAIALKLL 163 >gi|32491084|ref|NP_871338.1| ribonuclease T [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173142|sp|Q8D2L9|RNT_WIGBR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|25166291|dbj|BAC24481.1| rnt [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 215 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCPNG---------RKNS 56 +V D+ET G D D ++EI + L + + + P + N Sbjct: 21 VVIDVETAGFDPYRDALLEIAIITLRMDDNGFLRIDNKLHFNIIPTPGLNIKKSALKFNK 80 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + K + + A +AHNA FD F+ + + R Sbjct: 81 IDPYNPFRAAINERKAIKEIFNTVRLGIKKQSCSKAVVVAHNAYFDHSFLMSAVDRSKIK 140 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L+ C GI ++ H AL DS ++++ +++ Sbjct: 141 YNPFHSFSTFDTATLSGLVLGQTVLSKACIIAGIEFNNNYAHSALYDSKKTAELFCEIVN 200 Query: 177 GGSQIN 182 ++ Sbjct: 201 RWKKMG 206 >gi|168215255|ref|ZP_02640880.1| exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|168216790|ref|ZP_02642415.1| exonuclease family protein [Clostridium perfringens NCTC 8239] gi|170713347|gb|EDT25529.1| exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|182381117|gb|EDT78596.1| exonuclease family protein [Clostridium perfringens NCTC 8239] Length = 302 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 3/164 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG + D + + P + P + +HGI Sbjct: 1 MDFVAIDFET--ANEKRNSACSIGLTVVKDNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++++ +F+ I+ E D+ + V + I + + + Sbjct: 58 PEDVENERTFNEIWEEIKDYIDGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVM 117 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + P+ + S + + H + + LL+ Sbjct: 118 AKNYYKSLPNHKLGTVSEALGFEFSHHHAGEDARACANILLNIC 161 >gi|148242440|ref|YP_001227597.1| DNA polymerase III epsilon subunit [Synechococcus sp. RCC307] gi|147850750|emb|CAK28244.1| DNA polymerase III epsilon subunit [Synechococcus sp. RCC307] Length = 264 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 63/216 (29%), Gaps = 8/216 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGLD + D+++E+GA+ + L P G Sbjct: 42 ILDTETTGLDPEVDQVLEVGAILFSVPQRAVLAQLSFLLPVEANAAEPLNGIRAGA---- 97 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 P + F +AHNA FD + P + Sbjct: 98 -TQAPQPWQPSLQLLQQFASCAQLAVAHNAAFDRQWFGHGALPDLPLPWLCTMEDIHWPA 156 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--KMMVGGSQINFGFKT 187 R P +L + +HR+ + + + +++ G + ++ Sbjct: 157 DRLLRPRPSVRDLALAYGVPVWAAHRALTDCIYLAQVFERCDQLEQLIAEGREPRHLYRA 216 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + + R+++ +L+ Sbjct: 217 QVSYDERHLAREAGFRWNDPVHGAWSRRLSERQLEA 252 >gi|87302916|ref|ZP_01085720.1| exonuclease [Synechococcus sp. WH 5701] gi|87282412|gb|EAQ74371.1| exonuclease [Synechococcus sp. WH 5701] Length = 187 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 7/148 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + D + + + + +RT+ + P +HGIT Sbjct: 26 FVALDFET--ANYSRDSVCSLAIIRVESLKVVSRTY-RLIRPP--SPHFMFTDIHGITWG 80 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K +P+F + E + AHNA FD + A + + T+ Sbjct: 81 DVKSEPTF-KELWHEFRPLFEGISFIAAHNASFDSSVMRACCDTYRIV-PPGAPYLCTVK 138 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRS 156 +AR+ +L S+C G+ + H + Sbjct: 139 LARQTWQLRPANLPSVCAYLGLHLEHHN 166 >gi|307708507|ref|ZP_07644972.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus mitis NCTC 12261] gi|307615423|gb|EFN94631.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus mitis NCTC 12261] Length = 816 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + L + +P Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAENLFFEGYELRNPR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + L LC+ GI + H H AL D+ +++ + + +Q+ Sbjct: 116 VDT-VELAQVFFPKLEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLQEKMAQL 172 Query: 182 NFGF 185 G Sbjct: 173 PKGL 176 >gi|197336459|ref|YP_002157302.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11] gi|197317949|gb|ACH67396.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11] Length = 238 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC 49 + D ETTGLD+ + II IG V L+ ++ F+ Sbjct: 48 FVALDFETTGLDANQNSIISIGLVPFTLERIFCRQSQHWFVK 89 >gi|225868805|ref|YP_002744753.1| ATP-dependent DNA helicase [Streptococcus equi subsp. zooepidemicus] gi|225702081|emb|CAW99711.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. zooepidemicus] Length = 821 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 8/181 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI + + V D+E T II++G V +++ + ++Q + P+ S Sbjct: 1 MINEFSQKYAVIDLEATSPGP-TASIIQVGIV-IIEGKEIVDSYQTDVNPH-EPLSDHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS + ++ + ++AHN FD + L D L Sbjct: 58 ALTGITDQQLAQAPDFSQVARTIFELIED--CVFVAHNVTFDANLLAEALFLEGYDLL-- 113 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +DT+ +A+ +P S + ++ H A+ D+ ++++IK++ Sbjct: 114 TPRVDTVELAQIFYPCLEKYSLSHLSEV-LDLNLSDAHTAIADAQATANLFIKLLHKIES 172 Query: 181 I 181 + Sbjct: 173 L 173 >gi|300934269|ref|ZP_07149525.1| DNA polymerase III subunit epsilon [Corynebacterium resistens DSM 45100] Length = 225 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 19/30 (63%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 D+ETTGLDS+ DR++ IG + + + Sbjct: 45 AVDVETTGLDSRKDRLLSIGWIPVDGHEID 74 >gi|260202912|ref|ZP_05770403.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis K85] gi|289572362|ref|ZP_06452589.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis K85] gi|289536793|gb|EFD41371.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis K85] Length = 329 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 71/201 (35%), Gaps = 7/201 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETLGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D+P F+ I E D +AHN FD F+ AE + + + Sbjct: 75 DDQPQFADIAGEVVDVLRG--RTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELAR 132 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R + L +L +G+ H A D+ +L+ + + +++ + Sbjct: 133 RLQLGVDNLRLETLAAHWGVPQQRP--HDAFDDARVLTGILAAALESARELDVWLPVHPV 190 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 + V + L Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211 >gi|227548071|ref|ZP_03978120.1| DNA polymerase III, epsilon subunit [Corynebacterium lipophiloflavum DSM 44291] gi|227079869|gb|EEI17832.1| DNA polymerase III, epsilon subunit [Corynebacterium lipophiloflavum DSM 44291] Length = 188 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 17/30 (56%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 D+ETTGL + D+++ IG V + D Sbjct: 18 AVDVETTGLKPERDQLVSIGWVPVNDRVID 47 >gi|110799993|ref|YP_696096.1| DNA polymerase III subunit epsilon [Clostridium perfringens ATCC 13124] gi|168209994|ref|ZP_02635619.1| exonuclease family protein [Clostridium perfringens B str. ATCC 3626] gi|110674640|gb|ABG83627.1| exonuclease family protein [Clostridium perfringens ATCC 13124] gi|170711840|gb|EDT24022.1| exonuclease family protein [Clostridium perfringens B str. ATCC 3626] Length = 302 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 3/164 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG + D + + P + P + +HGI Sbjct: 1 MDFVAIDFET--ANEKRNSACSIGLTVVKDNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++++ +F+ I+ E D+ + V + I + + + Sbjct: 58 PEDVENERTFNEIWEEIKDYIDGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVM 117 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + P+ + S + + H + + LL+ Sbjct: 118 AKNYYKSLPNHKLGTVSEALGFEFSHHHAGEDARACANILLNIC 161 >gi|311694106|gb|ADP96979.1| ribonuclease T [marine bacterium HP15] Length = 208 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++E+ AV + D T + P G AL G Sbjct: 11 VVVDVETAGFNPERDALLEVAAVILTMDDDGWVRRAETHVQQIDPFEGANLEQSALDFTG 70 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + S + + + A + HNA FD FI A R + Sbjct: 71 IDPWNPEREAVPEREGLSEIFSPIRKAVKNHDCKRAVLVGHNATFDHNFIFAAALRADIR 130 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L CK GI S++ H A D+ +D++ ++ Sbjct: 131 RNPFHPFSTFDTATLAGLAYGHTVLAQACKLAGIPFSNKEAHSAAYDAEKTADLFCGIVN 190 Query: 177 GGSQIN 182 ++ Sbjct: 191 RWKELG 196 >gi|90962124|ref|YP_536040.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus salivarius UCC118] gi|227891147|ref|ZP_04008952.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus salivarius ATCC 11741] gi|90821318|gb|ABD99957.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus salivarius UCC118] gi|227867021|gb|EEJ74442.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus salivarius ATCC 11741] Length = 177 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 5/175 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + + + F + P+ S +++HGIT Sbjct: 1 MNFVAIDFET--ANPKRYSACSLALTVVKNNQ-IADQFYSLIKPDT-DFSWRNIQVHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ +++ PSF ++ +F N +AHNA FD + L+ + + Sbjct: 57 EKQVQNAPSFPELWPHIQNF-FTPNNLIVAHNASFDSSVLLRTLEHYDITLPHYQLLDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + + + L+++C I + H + +Y + G Q+ Sbjct: 116 RTSKKFFKDFENHKLDTICNNLNIDLKHHHNALFDSTACAEILLYQANLFGEDQL 170 >gi|330719279|ref|ZP_08313879.1| DNA polymerase III, epsilon subunit [Leuconostoc fallax KCTC 3537] Length = 177 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 5/150 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + + + I + D + F + P S + +HGI Sbjct: 1 MNFIAMDFET--ANHERHSAVSIALAIVRDDKIVDE-FYSLIRPET-YFSRRNVAIHGIE 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P F S ++ +AHNA FD G + L + + Sbjct: 57 EHDVLDAPKF-SELWPVIQPLFTEDKLVVAHNAPFDNGVLKGTLNYYGLEEPHYMLLDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156 + + + + LN++ + GI++ H Sbjct: 116 RTSRQFFPSFNNHKLNTVAENLGISLVHHH 145 >gi|194445493|ref|YP_002040683.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404156|gb|ACF64378.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 215 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A +AHNA FD F+ A +R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|16760479|ref|NP_456096.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764782|ref|NP_460397.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141761|ref|NP_805103.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413597|ref|YP_150672.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167551596|ref|ZP_02345350.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994263|ref|ZP_02575355.1| ribonuclease T [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168229807|ref|ZP_02654865.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235505|ref|ZP_02660563.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240948|ref|ZP_02665880.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264727|ref|ZP_02686700.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194451220|ref|YP_002045472.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469134|ref|ZP_03075118.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737431|ref|YP_002114446.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251543|ref|YP_002146611.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264202|ref|ZP_03164276.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362521|ref|YP_002142158.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200389402|ref|ZP_03216013.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|213426003|ref|ZP_03358753.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586461|ref|ZP_03368287.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609934|ref|ZP_03369760.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649691|ref|ZP_03379744.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855187|ref|ZP_03383427.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238913165|ref|ZP_04657002.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289805704|ref|ZP_06536333.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289824912|ref|ZP_06544333.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54039259|sp|P66685|RNT_SALTI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|54042002|sp|P66684|RNT_SALTY RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|81821446|sp|Q5PH07|RNT_SALPA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|25356018|pir||AD0695 ribonuclease T [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419954|gb|AAL20356.1| RNase T [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502775|emb|CAD01933.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi] gi|29137389|gb|AAO68952.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127854|gb|AAV77360.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194409524|gb|ACF69743.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455498|gb|EDX44337.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712933|gb|ACF92154.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197093998|emb|CAR59494.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197215246|gb|ACH52643.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242457|gb|EDY25077.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291124|gb|EDY30477.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199601847|gb|EDZ00393.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205323544|gb|EDZ11383.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327828|gb|EDZ14592.1| ribonuclease T [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335262|gb|EDZ22026.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339447|gb|EDZ26211.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205346854|gb|EDZ33485.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261246638|emb|CBG24448.1| Exoribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993323|gb|ACY88208.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157967|emb|CBW17462.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912417|dbj|BAJ36391.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224052|gb|EFX49115.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129704|gb|ADX17134.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988319|gb|AEF07302.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 215 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A +AHNA FD F+ A +R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|326527927|dbj|BAJ89015.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 259 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 + KM + D+E TGLD + DRI+EI + + D T R Sbjct: 66 EYKMPLVWIDLEMTGLDIRKDRILEIACI-ITDGKLTKR 103 >gi|315650464|ref|ZP_07903534.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Eubacterium saburreum DSM 3986] gi|315487260|gb|EFU77572.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Eubacterium saburreum DSM 3986] Length = 299 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52 ++ DIET GLD++ + IIE+GA++ + + FQ + G Sbjct: 130 FVIVDIETDGLDNEKNVIIEVGAIKSVSGVLS--EFQSLVNYEG 171 >gi|298369304|ref|ZP_06980622.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sp. oral taxon 014 str. F0314] gi|298283307|gb|EFI24794.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sp. oral taxon 014 str. F0314] Length = 463 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 83/215 (38%), Gaps = 13/215 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+E+TG + DRI E+ + + + ++ + P + L GITDE + Sbjct: 23 VVDLESTGGNFYRDRITEVAVLRFERGAA--KRYEWLVNPQ-QPIPKFVADLTGITDEAV 79 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P FS I ++ + A +AHN++FD F+ E +R D + + T+ ++ Sbjct: 80 SGAPVFSDIAADLLPLLHG--AVVVAHNSRFDYTFLRHEFRRAGMD--FAAPALCTVQLS 135 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG-----F 185 RR +P I+ S+H A+ D LSD + +V + Sbjct: 136 RRLYPQFYRHNLDSI-IERFGIAVESRHRAMADVAALSDFLERSLVEKGAEEWERHCRSL 194 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + + + L + + + E Sbjct: 195 MNPKMLPASLPEGLSRRLYRLPDSSGVLIWLDESE 229 >gi|269963087|ref|ZP_06177423.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832219|gb|EEZ86342.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 217 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 58/189 (30%), Gaps = 21/189 (11%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + + I+ D ETTGL S I+E A+ + P +A Sbjct: 11 MKKLSTENAIIIDTETTGLGSD-AEIVEFTAICADSGKVIVNE---LVKPTC-SIPADAT 65 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI----------------AHNAKFDVG 104 +HGIT+E +KD P F +FS + I NA + Sbjct: 66 AIHGITNEDVKDAPDFHLVFSNHFLPXLNGRLIIIYNSDFDTRLIIQSLDKHCNAVYVQS 125 Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 + + L++ C + + +S + H AL D Sbjct: 126 VHDLFFKFCVPQCAMLWYAEFFGVWNEHHEDYKWQSLSNACAQQSVDVSDLTAHRALADC 185 Query: 165 HLLSDVYIK 173 + + Sbjct: 186 EMTRRLIHA 194 >gi|152993730|ref|YP_001359451.1| DNA polymerase III subunit epsilon [Sulfurovum sp. NBC37-1] gi|151425591|dbj|BAF73094.1| DNA polymerase III, epsilon subunit [Sulfurovum sp. NBC37-1] Length = 272 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 3/94 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V DIET G ++IEIGAV + +R + F+ K+ GI Sbjct: 73 RYCVIDIETNGSKPGTSQVIEIGAVMVEKGEIVDR-LETFV--ECAFLPEYITKITGIEP 129 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 LKD P+ + ++ F + N + Sbjct: 130 IDLKDAPTRRAALTQLRQFMGDAVFVAHNANFDY 163 >gi|312131463|ref|YP_003998803.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella byssophila DSM 17132] gi|311908009|gb|ADQ18450.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella byssophila DSM 17132] Length = 270 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTG++ DRI+EI + + T T + P E +HGI DE + Sbjct: 14 IIDLETTGVNITRDRIVEI-CIAKANLDGTVETRTKKVNP-TIPIPLETSLIHGIYDEDV 71 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK 100 ++P+F + F + N Sbjct: 72 ANEPTFKQLARSLAQFLEGCDLAGFNSNRF 101 >gi|327537942|gb|EGF24639.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica WH47] Length = 355 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 57/151 (37%), Gaps = 7/151 (4%) Query: 7 MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M D ET T ++D ++ AV + + + P SP +++HGI Sbjct: 1 MDFTAIDFETAT---RRSDSACQLAAVRVRGGEIVDSA-CWLIRPRPFVFSPANIQIHGI 56 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T ++++P F ++ E + IAHNA FD+G + A L+ + D Sbjct: 57 TPGMVREEPEFGELWPEIQSTLGDDC--LIAHNASFDLGVLMACLESHDHPVPDMQYSCT 114 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRS 156 R R L L GI H Sbjct: 115 RAIARRTWPQQPRFGLKPLSDWLGIRFRHHD 145 >gi|317057849|ref|YP_004106316.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7] gi|315450118|gb|ADU23682.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7] Length = 295 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+ D ETTGL +D ++++ ++ + +L P + EA ++ IT Sbjct: 128 IIIDTETTGLSELDDELLQVSIIDDAGNVL----YNSYLRPLYHTSWKEAECVNNITPRM 183 Query: 70 LKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + P+ + N + G I+ + + + I Sbjct: 184 VAEAPTIYDEMPKINAIIKAAKKIIGFNTGFDENFLYFSGGISWMNKEVVDVMTMFAPIY 243 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 S + + Y + H +L D + VY Sbjct: 244 GEWSEQYDDYKWQNLIKAADYYDYDWSSRPGEAHNSLADCYATLYVY 290 >gi|24379729|ref|NP_721684.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus mutans UA159] gi|24377689|gb|AAN58990.1|AE014965_11 putative ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit (3'-5' exonuclease) [Streptococcus mutans UA159] Length = 820 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 81/174 (46%), Gaps = 8/174 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K + V D+E TG + II++G V + + +T+ + P+ + S + Sbjct: 1 MTEKKTRKYAVVDLEATGASH-SASIIQVGIVIIENEQII-QTYTTDVNPH-KPLSKAII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GITD L+ P FS + ++ + ++ ++AHN KFD + L + L Sbjct: 58 RLTGITDAQLQQAPDFSEVAADIYHLIDD--CVFVAHNVKFDANLLAEHLFLEGFELL-- 113 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +DT+ +A+ +P+ + I H A+ D+ +++++K+ Sbjct: 114 TPRVDTVELAQVFYPTFEKYSL-GNLTELLKIDLSDAHTAIADAKATAELFLKL 166 >gi|32477333|ref|NP_870327.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica SH 1] gi|32447884|emb|CAD77402.1| probable DNA polymerase III polC-type [Rhodopirellula baltica SH 1] Length = 355 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 57/151 (37%), Gaps = 7/151 (4%) Query: 7 MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M D ET T ++D ++ AV + + + P SP +++HGI Sbjct: 1 MDFTAIDFETAT---RRSDSACQLAAVRVRGGEIVDSA-CWLIRPRPFVFSPANIQIHGI 56 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T ++++P F ++ E + IAHNA FD+G + A L+ + D Sbjct: 57 TPGMVREEPEFGELWPEIQSTLGDDC--LIAHNASFDLGVLMACLESHDHPVPDMQYSCT 114 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRS 156 R R L L GI H Sbjct: 115 RAIARRTWPQQPRFGLKPLSDWLGIRFRHHD 145 >gi|167763751|ref|ZP_02435878.1| hypothetical protein BACSTE_02131 [Bacteroides stercoris ATCC 43183] gi|167697867|gb|EDS14446.1| hypothetical protein BACSTE_02131 [Bacteroides stercoris ATCC 43183] Length = 163 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 5/159 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 D ET + + + +G V + + + ++ + P + ++HG+T Sbjct: 3 NFAAIDFET--ANEQRTSVCSVGVVIVRNG-EIADSYYSLIRPEPEYYTYWNTRVHGLTL 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 P F +++ E +AHN FD + A + D D Sbjct: 60 ADTSRSPVFPAVWQEIAPRIEG--LTLVAHNKAFDESCLKAVFRMYGMDYPDYDFRCTLQ 117 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + R L+++ G + A ++ Sbjct: 118 ASRRAIKGLPDYQLHTVAAWCGYRLEQHHHALADAEACA 156 >gi|148977600|ref|ZP_01814176.1| ribonuclease T [Vibrionales bacterium SWAT-3] gi|145963115|gb|EDK28383.1| ribonuclease T [Vibrionales bacterium SWAT-3] Length = 211 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 14/188 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A+ L + T + P G AL +G Sbjct: 20 VVIDVETAGFNAETDALLEICAITLKMDENGDLQPASTLHFHIEPFEGANIEQAALDFNG 79 Query: 65 ITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I D F + + + + A +AHNA FD+ F+NA +R Sbjct: 80 IKDPFSPLRGAVSEQEALKEIYKLVRKEQKASDCSRAIMVAHNATFDLNFVNAASERCKL 139 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + A + L C+ G+ ++ H AL D+ ++++ ++ Sbjct: 140 KRVPFHPFATFDTAALSGLAYGQTVLAKACRTAGMEFDNKEAHSALYDTQKTTELFCGIV 199 Query: 176 VGGSQINF 183 + Sbjct: 200 NKVESPWW 207 >gi|182626433|ref|ZP_02954185.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721] gi|177908230|gb|EDT70788.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721] Length = 302 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 55/164 (33%), Gaps = 3/164 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG + + + + P + P + +HGI Sbjct: 1 MDFVAIDFET--ANEKRNSACSIGLTVVKNNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++++ +F+ I+ E D+ + V + I + + + Sbjct: 58 PEDVENERTFNEIWEEIKDYIDGNLVIAHNAAFDISVLRKTLDFYDILYPDFEYACTVVM 117 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + P+ + S + + H + + LL+ Sbjct: 118 AKNYYKSLPNHKLGTVSEALGFEFSHHHAGEDARACANILLNIC 161 >gi|317969731|ref|ZP_07971121.1| putative DNA polymerase III, epsilon subunit [Synechococcus sp. CB0205] Length = 302 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 14/24 (58%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL 34 + D ETTGL R IE+GAV Sbjct: 75 ILDTETTGLSPAEHRCIEVGAVLF 98 >gi|218190704|gb|EEC73131.1| hypothetical protein OsI_07145 [Oryza sativa Indica Group] Length = 247 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 +M + D+E TGLD DRI+EI + + D T + Sbjct: 65 QMPLVWIDLEMTGLDVAKDRILEIACI-ITDGKLTKQ 100 >gi|304311282|ref|YP_003810880.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma proteobacterium HdN1] gi|301797015|emb|CBL45228.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma proteobacterium HdN1] Length = 297 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 5/148 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ET ++ I +IG VE + + R + ++ P + +HGIT+ Sbjct: 9 FVAIDVET--ANANMASICQIGLVEYSNGTPI-REWSSYVNPED-YFDGMNVSVHGITEG 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P FS + E + + Sbjct: 65 TVIGAPVFSEVSEVLRSML-EGRVVVCHTHFDRAAISKAFRKSGATELSCQWLDSAKVAR 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRS 156 A L+++ K G T H Sbjct: 124 RAWEVCAEKGYGLSAVSKMLGYTFQHHD 151 >gi|168463155|ref|ZP_02697086.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195634173|gb|EDX52525.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 215 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A +AHNA FD F+ A +R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|161503473|ref|YP_001570585.1| ribonuclease T [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|204927787|ref|ZP_03218988.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352852|ref|YP_002226653.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857062|ref|YP_002243713.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|160864820|gb|ABX21443.1| hypothetical protein SARI_01547 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|204323129|gb|EDZ08325.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272633|emb|CAR37543.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708865|emb|CAR33195.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326627923|gb|EGE34266.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 215 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A +AHNA FD F+ A +R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|59713121|ref|YP_205897.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114] gi|59481222|gb|AAW87009.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) [Vibrio fischeri ES114] Length = 238 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC 49 + D ETTGLD+ + II IG V L+ ++ F+ Sbjct: 48 FVALDFETTGLDANQNSIISIGLVPFTLERIFCRQSQHWFVK 89 >gi|62180023|ref|YP_216440.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614147|ref|YP_001588112.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168819183|ref|ZP_02831183.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|198245565|ref|YP_002215700.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|81309702|sp|Q57PK2|RNT_SALCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|62127656|gb|AAX65359.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161363511|gb|ABX67279.1| hypothetical protein SPAB_01887 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197940081|gb|ACH77414.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205343777|gb|EDZ30541.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086089|emb|CBY95863.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322714491|gb|EFZ06062.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326623447|gb|EGE29792.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 215 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A +AHNA FD F+ A +R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|322388190|ref|ZP_08061794.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus infantis ATCC 700779] gi|321140862|gb|EFX36363.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus infantis ATCC 700779] Length = 816 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 75/174 (43%), Gaps = 9/174 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +N R +V D+E T SK +II++G V + D + + P+ R Sbjct: 1 MNFRNN-RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-EQYATDVNPHER-LDSHIK 56 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+TD+ L P FS + + ++ + ++AHN +FD + + Sbjct: 57 ELTGLTDKRLAKAPEFSQVAEKIFELVKD--GIFVAHNVQFDANLLAEF--LFFEGYELR 112 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + IDT+ +A+ +P + I H AL D+ +++++ M Sbjct: 113 TPRIDTVELAQIFYPQLEKYNL-GILCQELGIPLEQAHSALSDAQATAELFLCM 165 >gi|323498776|ref|ZP_08103762.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326] gi|323316138|gb|EGA69163.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326] Length = 210 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 75/181 (41%), Gaps = 8/181 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETT LD ++ I A +++ + T+R F+V L + ++K+H I Sbjct: 30 YVSLDCETTSLDPNRAELVTIAAAKIIDNRIITSRPFEVRLR-APQSLDSNSVKIHQIRH 88 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L D + +F N + ++ ++D ++ +R PL I + Sbjct: 89 KDLVDGIDEKQALIQLLEFI--GNRPLVGYHIRYDKKILDLACRRHLGFPLPNPLIEVSQ 146 Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 R P++ DL+ + + ++KH AL D+ + V++++ G + Sbjct: 147 IYHDKLERHLPNAYFDLSLEAICKHLDLPMQNKHDALQDAISAALVFVRLT-KGDLPSLN 205 Query: 185 F 185 Sbjct: 206 L 206 >gi|89098850|ref|ZP_01171731.1| DNA polymerase III subunit epsilon [Bacillus sp. NRRL B-14911] gi|89086526|gb|EAR65646.1| DNA polymerase III subunit epsilon [Bacillus sp. NRRL B-14911] Length = 214 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 33/124 (26%), Gaps = 5/124 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ-----VFLCPNGRKNSPEALKLHGIT 66 D+ETTGL D IIE+ + T Q FL + Sbjct: 10 VDVETTGLAPGGDEIIELAFILFSYDGATGEILQVEEKESFLREPLSSRALRNYSSAYRI 69 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + E F + AHNA FD F+ +N + Sbjct: 70 HGIPFEMVRGQVFHDESVQSFLNKADSVFAHNASFDRSFMYQMYPEVNDLKWYCTMKGVQ 129 Query: 127 LSIA 130 Sbjct: 130 WKKY 133 >gi|294508356|ref|YP_003572414.1| DNA helicase II [Salinibacter ruber M8] gi|294344684|emb|CBH25462.1| DNA helicase II [Salinibacter ruber M8] Length = 1227 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 3/168 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67 ++ D+E T D ++ R+ EIGA+++ D + +R F + P Sbjct: 827 YVMVDLEATSTDPRHCRVAEIGALKVRDGTVVDR-FSELVQLPEDLTADERETLRTVCGL 885 Query: 68 EFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D + DF A +AHN + + L ++ + D Sbjct: 886 DPASDFDEARPEADVWADFCDFADTAPLVAHNGQRYDFRVLRRLANTHEADARWATTYDL 945 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L A P R + + + + H AL D + +M Sbjct: 946 LPAAHELFPDLRRYDAAHLRETLLDDDADTAHRALADCEDQQRILARM 993 >gi|322374613|ref|ZP_08049127.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. C300] gi|321280113|gb|EFX57152.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. C300] Length = 829 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 89/226 (39%), Gaps = 9/226 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + + ++ + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIENGEIIDQ-YATDVNPH-EPLDSHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + ++ + ++AHN +FD + L + P Sbjct: 64 QRLAAAPEFSQVAGKIFELVKD--GIFVAHNVQFDANLLAEFLFFEGYELRTPRVDT-VE 120 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + +L LC+ GI + H H AL D+ +++ + M ++ G Sbjct: 121 LAQVLYPQFEKYNLGILCQELGIELEHA--HTALSDAQATAELLLYMRQKLFELPKGLLE 178 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + + + + + + + + ++ H ++ K Sbjct: 179 SL-LNLADNLLYESYLVIEEVYQQQSLLSSPDLMELHGLFLKKESK 223 >gi|115446061|ref|NP_001046810.1| Os02g0465500 [Oryza sativa Japonica Group] gi|47496882|dbj|BAD19846.1| putative oligoribonuclease [Oryza sativa Japonica Group] gi|47497504|dbj|BAD19557.1| putative oligoribonuclease [Oryza sativa Japonica Group] gi|113536341|dbj|BAF08724.1| Os02g0465500 [Oryza sativa Japonica Group] gi|215687346|dbj|BAG91911.1| unnamed protein product [Oryza sativa Japonica Group] Length = 247 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 +M + D+E TGLD DRI+EI + + D T + Sbjct: 65 QMPLVWIDLEMTGLDVAKDRILEIACI-ITDGKLTKQ 100 >gi|197286329|ref|YP_002152201.1| plasmid-related exonuclease [Proteus mirabilis HI4320] gi|194683816|emb|CAR44904.1| putative plasmid-related exonuclease [Proteus mirabilis HI4320] Length = 301 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 79/237 (33%), Gaps = 15/237 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPE 58 + M ++ D ETTGL + ++ IIE+G V++L + G+ Sbjct: 49 EQPM--VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIIDLISLYEDPGKPIPEL 106 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 +L GITD+ ++ + S+ + + + +AHNA+FD F + Sbjct: 107 ITELTGITDDMVQGQHIDDSLVASW----LSDDPLVVAHNAQFDRPFFENRFAALGHLSW 162 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 S + L L Y + +LL + ++ Sbjct: 163 ACSASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFYLLPESVANLLSEA 222 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231 + + F ++ +K + I+++EL + + L Sbjct: 223 DRRTVLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279 >gi|298485963|ref|ZP_07004037.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159440|gb|EFI00487.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 244 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 64/194 (32%), Gaps = 11/194 (5%) Query: 4 KNKMRK-IVF-DIETTGL--------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53 +N+M + I F D ETTGL D + +++I + + +F+ + P G Sbjct: 37 ENQMSQLIAFYDTETTGLPRFKDPSDDPRQPHLVDICILLYTPQGELVDSFEAMIKPEGW 96 Query: 54 KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 E +HGIT E ++ + EQ +AHN FD + ++R Sbjct: 97 TIPDEVAAIHGITTEMALEQGIPELEALGGFLRVYEQAGLRVAHNVSFDDRIMRIAIKRF 156 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + + + K + + L + Sbjct: 157 IGEQAANEFKAMPNYCTCQSSKNIVKCPPT-AKMIAAGFGRPGMYKVPTVAEALRHFTGE 215 Query: 174 MMVGGSQINFGFKT 187 +VGG + + Sbjct: 216 ELVGGHRARPDTEA 229 >gi|209693722|ref|YP_002261650.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238] gi|208007673|emb|CAQ77784.1| putative exonuclease [Aliivibrio salmonicida LFI1238] Length = 238 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC 49 + D ETTGLD+ + II IG V L+ + + F+ Sbjct: 48 FVALDFETTGLDANQNSIISIGLVPFTLERIRCRESQHWFVK 89 >gi|254286229|ref|ZP_04961188.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae AM-19226] gi|150423644|gb|EDN15586.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae AM-19226] Length = 209 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 73/171 (42%), Gaps = 7/171 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETT LD K ++ I A ++ + T++ F+V LC + ++++H I Sbjct: 30 YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLC-APQSLDSGSVRIHRIRH 88 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L D S + +F N + ++ +D ++ ++ PL I + Sbjct: 89 QDLHDGLSEKEALLQLIEFI--GNRPLVGYHIHYDKTILDIACRKHLGFPLPNRLIEVSQ 146 Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + P++ DL+ + + + KH AL D+ + V++++ Sbjct: 147 IYHDKLEKHLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIAAALVFVRLT 197 >gi|150025263|ref|YP_001296089.1| DNA polymerase III, epsilon subunit [Flavobacterium psychrophilum JIP02/86] gi|149771804|emb|CAL43278.1| Probable DNA polymerase III, epsilon subunit [Flavobacterium psychrophilum JIP02/86] Length = 160 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 10/167 (5%) Query: 7 MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M D ET T +G V + + + F + P + SP + +HGI Sbjct: 1 MTFTAIDFETATAFHP-----CSVGIVTVQNGVIVDE-FVTLIKPPNNQYSPFTIAVHGI 54 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + SF ++ E + + +V + L ++ + L+ S + Sbjct: 55 RPRDTVNAKSFLEVYPEIKKRLQNKTVVAHNESFDRNVLAKSMALYGLDYETLNISNRWE 114 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + L+ C+ + H AL D+ + +Y+ Sbjct: 115 CTLKIYKAKGFKPTKLSDCCQEMN---IKLNHHEALSDARACAKLYL 158 >gi|312278202|gb|ADQ62859.1| ATP-dependent DNA helicase [Streptococcus thermophilus ND03] Length = 828 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 76/181 (41%), Gaps = 8/181 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K+ + + D+E T S II++G V + + + F + P+ +K + Sbjct: 1 MSEKSTNKYAIVDLEATSASS-TACIIQVGIVIMQNGRVIDE-FASDVNPH-QKLDNHIV 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I ++ + ++AHN KFD + + Sbjct: 58 HLTGITDQQLSQAPDFSEIARTIFELIED--CIFVAHNVKFDANLLA--EALFMEGFELR 113 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +DT+ +A+ +P+ S R + + H A+ D+ + + +M + Sbjct: 114 TPRVDTVELAQVFYPTLEQYNLSYLSRV-LNLDLAQAHTAIEDARATGKLLLHLMDKIAS 172 Query: 181 I 181 + Sbjct: 173 L 173 >gi|83815933|ref|YP_446416.1| DNA helicase II [Salinibacter ruber DSM 13855] gi|83757327|gb|ABC45440.1| DNA helicase II [Salinibacter ruber DSM 13855] Length = 1084 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 58/168 (34%), Gaps = 3/168 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67 ++ D+E T D ++ R+ EIGA+++ D + +R F + P Sbjct: 689 YVMVDLEATSTDPRHCRVAEIGALKVRDGTVVDR-FSELVQLPEDLTADERETLRTVCGL 747 Query: 68 EFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D + + DF A +AHN + + L ++ + D Sbjct: 748 DPASDFDEARPEAAVWADFCAFVDGAPLVAHNGQRYDFRVLRRLANTHEADAHWATTYDL 807 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L A P R + + + + H AL D + +M Sbjct: 808 LPAAHELFPDLRRYDAAHLRETLLDDDADTAHRALADCEDQQRILARM 855 >gi|229113222|ref|ZP_04242717.1| exonuclease [Bacillus cereus Rock1-15] gi|228670248|gb|EEL25596.1| exonuclease [Bacillus cereus Rock1-15] Length = 288 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 11/144 (7%) Query: 5 NKM-----RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 NKM + ++ D ETTGL + D+IIEI ++L + P EA Sbjct: 122 NKMFINKDQFVILDTETTGL-TLRDQIIEISVIDLAGKIL----LNSLVKP-TIIIPAEA 175 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGIT+E + S+++I+ E + + + + Sbjct: 176 TSIHGITNEMIHGAQSWTTIYQELLEVTVGKTILIYNAEFDLGMIENTCIANNVEFKDFK 235 Query: 120 PSRIIDTLSIARRKHPSSRNDLNS 143 + ++ + + Sbjct: 236 STCVMKMYADYVDSKKWISLSDAT 259 >gi|154252272|ref|YP_001413096.1| exodeoxyribonuclease I [Parvibaculum lavamentivorans DS-1] gi|154156222|gb|ABS63439.1| Exodeoxyribonuclease I [Parvibaculum lavamentivorans DS-1] Length = 468 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 4/96 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHG 64 M + FD ETTGL D+I+ A+ F L P+ + Sbjct: 1 MSFVFFDTETTGLRHGFDQIVHFAAIRTDADLNEIDRFEAHSRLLPHVVPHPFALYTNGL 60 Query: 65 ITDEFLKD--KPSFSSIFSEFWDFFNEQNAEWIAHN 98 D + + + + + ++ +N Sbjct: 61 SIGRLTDDGLPSHYVMVQTIRRKLLSWSPSIFVGYN 96 >gi|115524481|ref|YP_781392.1| exodeoxyribonuclease I [Rhodopseudomonas palustris BisA53] gi|115518428|gb|ABJ06412.1| Exodeoxyribonuclease I subunit C [Rhodopseudomonas palustris BisA53] Length = 490 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 32/111 (28%), Gaps = 4/111 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + FD ETTGL D+I+ A+ + F+V R + Sbjct: 1 MGFVFFDTETTGLRHGFDQIVHFAAIRTDNDLNETDRFEV----RSRLLPHVVPHPSALR 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 L + ++ +A + VG+ + Sbjct: 57 TNRLSIERLIDGTLPSHYEMVRAIQRTLLAWSPSIFVGYNSIRFDEEMLRH 107 >gi|220920536|ref|YP_002495837.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] gi|219945142|gb|ACL55534.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] Length = 189 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 8/176 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR + D ET + + D +G + D R + P + SP +++HGI Sbjct: 1 MRTLAIDFET--ANERRDSACAVGLAWIEDGRVVRRE-ARLIRPAEMRFSPFNVRVHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + D P F++ + F A +AHNA FD+G + A L D + + Sbjct: 58 PEDVADAPDFAAAMAPFLPEIAG--ALVLAHNASFDIGVLAAALAACGLPQPDYTSLCTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R+ R L +L R GI H A D+ + ++V + M + Sbjct: 116 QLARRQWPGQERYRLPALAARLGIAF---RHHDAGEDAFVCAEVALAAMREAGAPD 168 >gi|116051228|ref|YP_789941.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa UCBPP-PA14] gi|296388274|ref|ZP_06877749.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAb1] gi|115586449|gb|ABJ12464.1| putative nuclease [Pseudomonas aeruginosa UCBPP-PA14] Length = 208 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 60/168 (35%), Gaps = 3/168 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D+ETT LD + ++ IGAV + ++++ P E++++H + Sbjct: 33 ISLDLETTSLDPRRADVLSIGAVLVRRGKLVMGERLELYVEPPP-SLDAESIRIHKLRRA 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIIDTL 127 L+ + + F ++ + + +L Sbjct: 92 DLEGQLQLEQALRQLLAFIGDRPLLGYYLSFDVAVLNRHLRQLFDRQLHNPSIEISSLYH 151 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R P + DL + + +H AL D+ ++ ++++++ Sbjct: 152 RKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLL 199 >gi|330873568|gb|EGH07717.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4] Length = 206 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + FQ + G + L GI+ Sbjct: 3 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIV-ELFQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKP 74 + ++ P Sbjct: 61 NNMIRTAP 68 >gi|55822780|ref|YP_141221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus thermophilus CNRZ1066] gi|55738765|gb|AAV62406.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066] Length = 828 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 76/181 (41%), Gaps = 8/181 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K+ + + D+E T S II++G V + + + F + P+ +K + Sbjct: 1 MSEKSTNKYAIVDLEATSASS-TACIIQVGIVIMQNGRVIDE-FASDVNPH-QKLDNHIV 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I ++ + ++AHN KFD + + Sbjct: 58 HLTGITDQQLSQAPDFSEIARTIFELIED--CIFVAHNVKFDANLLA--EALFMEGFELR 113 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +DT+ +A+ +P+ S R + + H A+ D+ + + +M + Sbjct: 114 TPRVDTVELAQVFYPTLEQYNLSYLSRV-LNLDLAQAHTAIEDARATGKLLLHLMDKIAS 172 Query: 181 I 181 + Sbjct: 173 L 173 >gi|299142345|ref|ZP_07035477.1| exonuclease [Prevotella oris C735] gi|298576067|gb|EFI47941.1| exonuclease [Prevotella oris C735] Length = 162 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 7/152 (4%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+ D ET +++ + +G V + D +R F + P + ++HG+ Sbjct: 1 MKDFAAIDFET--ANNERTSVCSVGLVVMRDGKIADR-FYSLIHPEPDYYTYWNTRVHGL 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T P F ++ + N +AHN FD + A + D D S Sbjct: 58 TQADTNHAPIFPEVWCKVEPLI--VNLPLVAHNKAFDESCLKAVFRCYQMDYPDYSFYC- 114 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSK 157 TL+ +RR P ++L+ + R G +++ Sbjct: 115 TLAQSRRVWPQGHHNLDIIAARCGYDLTNHHH 146 >gi|290580273|ref|YP_003484665.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025] gi|254997172|dbj|BAH87773.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025] Length = 842 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 81/174 (46%), Gaps = 8/174 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K + V D+E TG + II++G V + + +T+ + P+ + S + Sbjct: 23 MTEKKTRKYAVVDLEATGASH-SASIIQVGIVIIENEQII-QTYTTDVNPH-KPLSKAII 79 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GITD L+ P FS + ++ + ++ ++AHN KFD + L + L Sbjct: 80 RLTGITDAQLQQAPDFSEVAADIYHLIDD--CVFVAHNVKFDANLLAEHLFLEGFELL-- 135 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +DT+ +A+ +P+ + I H A+ D+ +++++K+ Sbjct: 136 TPRVDTVELAQVFYPTFEKYSL-GNLTELLKIDLSDAHTAIADAKATAELFLKL 188 >gi|294791718|ref|ZP_06756866.1| putative exonuclease family protein [Veillonella sp. 6_1_27] gi|294456948|gb|EFG25310.1| putative exonuclease family protein [Veillonella sp. 6_1_27] Length = 327 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 25/205 (12%) Query: 7 MRKIVFDIE--------------T----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 M IVFD+E T TG II+IGAV+L + F +F+ Sbjct: 1 MNYIVFDLEWNQPYSNDISFMKRTKMPLTG------EIIQIGAVKLNEKMDIIDHFTMFI 54 Query: 49 CPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 P + +L GIT L F + F + ++ + + N Sbjct: 55 KPQYLTRMHKHVRELTGITTHELNHGVPFKTAMQYFQKWCGDEYMLLSWGSDDILILREN 114 Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 L ++ D + +R + + + + I+ H S H AL D+ Sbjct: 115 LMLHKMKALSYDQWVDAQMIYSYQRYGTNQQYSVAHAMENLNISTEHLSAHNALHDAVFT 174 Query: 168 SDVYIKMMVGGSQINFGFKTNEDRF 192 + + + + +++ E Sbjct: 175 AHICQSLDIAQGILHYDLIRKESSN 199 >gi|182418640|ref|ZP_02949917.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521] gi|237668503|ref|ZP_04528487.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377502|gb|EDT75056.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521] gi|237656851|gb|EEP54407.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 308 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 5/150 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + K IG V + + + + P + P + +HGI Sbjct: 1 MDYIAIDFET--ANEKRSSPCSIGIVVVKNSEVVEKI-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++++P F I+ +F+ AHNA FD+ + ++ N +P+ I Sbjct: 58 PGMVENEPEFDEIWKRIKGYFDNGFVI--AHNASFDISVLRRTMELYNIEPVSFKYICTM 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156 + LN++ + G H Sbjct: 116 KLSKNFYPQIENSKLNTVNRFLGYEFDHHD 145 >gi|254229568|ref|ZP_04922981.1| DNA polymerase III, alpha subunit [Vibrio sp. Ex25] gi|151937941|gb|EDN56786.1| DNA polymerase III, alpha subunit [Vibrio sp. Ex25] Length = 226 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 55/189 (29%), Gaps = 21/189 (11%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + I+ D ETTGL + I+E A+ + P +A Sbjct: 22 MKKLPTENAIIIDTETTGLGAD-AEIVEFTAICANSGEVIVDE---LVKPTC-SIPADAT 76 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI----------------AHNAKFDVG 104 +HGIT+E +KD P F +FS + I NA + Sbjct: 77 AIHGITNEDVKDAPDFHLMFSNRFLPLLNGRPIIIYNSDFDTRLIIQSLDKHCNAAYVQS 136 Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 + + L + C + + +S H AL D Sbjct: 137 VHDLFFKFCVPQCAMLWYAEFYGVWNEYHEDYKWQSLTNACAQQHVDVSDLIAHRALADC 196 Query: 165 HLLSDVYIK 173 + + Sbjct: 197 EMTRRLIHA 205 >gi|108802442|ref|YP_642638.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS] gi|119855268|ref|YP_935871.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS] gi|108772861|gb|ABG11582.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS] gi|119697985|gb|ABL95056.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS] Length = 193 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 21/58 (36%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +V D+ET+G D RI+ + A+ + T L P + L Sbjct: 7 FVVVDVETSGFDPHTARILSVAALVVTTNGVTTTALHTLLDPGVDPGPTDIHGLTTAM 64 >gi|313808696|gb|EFS47150.1| exonuclease [Propionibacterium acnes HL087PA2] Length = 210 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 58/176 (32%), Gaps = 13/176 (7%) Query: 9 KIVFDIET----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + D ET G+ + ++ V++LD +R + P +S E LHG Sbjct: 43 FVAVDFETANRMGGVSA-----CQVAMVKVLDGQIVDR-LNTLIRPPKGWDSFEFTYLHG 96 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + D P + +I F + A AHNA FD + L Sbjct: 97 ISAADVADAPGWINIADTVSHFVDG--ATVYAHNAAFDSRVWRQLDEHFGTTTLPAPFFC 154 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + A+R P N + H A D+ + + ++ Sbjct: 155 -SYRTAQRLIPGLPNYKLPTVLHACAPNYQLNHHRADSDAKACALIVCELQRRAQT 209 >gi|323343969|ref|ZP_08084196.1| exonuclease [Prevotella oralis ATCC 33269] gi|323095788|gb|EFZ38362.1| exonuclease [Prevotella oralis ATCC 33269] Length = 165 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 5/168 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 D ET ++ + +G V + D T ++ +CP + +HG+T Sbjct: 3 NFAAIDFET--ANAARTSVCSVGMVIVEDGEIT-DSYYHLICPLPNYYTLWTTAVHGLTF 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E P+F +++E + +AHN FD + A + D L Sbjct: 60 EDTAGAPTFPDVWAEIAPKI--RYLPLVAHNKAFDESCLKAVFKAYGMQYPDYKFYCTLL 117 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + S H AL D+ + + +K++ Sbjct: 118 GARRTFRKGMLPNYQLQTVAQYCGYSLSHHHHALADAEACAHIALKIL 165 >gi|289425017|ref|ZP_06426796.1| exonuclease [Propionibacterium acnes SK187] gi|289427636|ref|ZP_06429348.1| exonuclease [Propionibacterium acnes J165] gi|295131251|ref|YP_003581914.1| exonuclease [Propionibacterium acnes SK137] gi|289154716|gb|EFD03402.1| exonuclease [Propionibacterium acnes SK187] gi|289159127|gb|EFD07319.1| exonuclease [Propionibacterium acnes J165] gi|291376299|gb|ADE00154.1| exonuclease [Propionibacterium acnes SK137] gi|313763263|gb|EFS34627.1| exonuclease [Propionibacterium acnes HL013PA1] gi|313773241|gb|EFS39207.1| exonuclease [Propionibacterium acnes HL074PA1] gi|313793400|gb|EFS41458.1| exonuclease [Propionibacterium acnes HL110PA1] gi|313801125|gb|EFS42391.1| exonuclease [Propionibacterium acnes HL110PA2] gi|313810334|gb|EFS48050.1| exonuclease [Propionibacterium acnes HL083PA1] gi|313812157|gb|EFS49871.1| exonuclease [Propionibacterium acnes HL025PA1] gi|313814708|gb|EFS52422.1| exonuclease [Propionibacterium acnes HL059PA1] gi|313817876|gb|EFS55590.1| exonuclease [Propionibacterium acnes HL046PA2] gi|313819789|gb|EFS57503.1| exonuclease [Propionibacterium acnes HL036PA1] gi|313823447|gb|EFS61161.1| exonuclease [Propionibacterium acnes HL036PA2] gi|313824920|gb|EFS62634.1| exonuclease [Propionibacterium acnes HL063PA1] gi|313828254|gb|EFS65968.1| exonuclease [Propionibacterium acnes HL063PA2] gi|313830174|gb|EFS67888.1| exonuclease [Propionibacterium acnes HL007PA1] gi|313833097|gb|EFS70811.1| exonuclease [Propionibacterium acnes HL056PA1] gi|313838091|gb|EFS75805.1| exonuclease [Propionibacterium acnes HL086PA1] gi|314914476|gb|EFS78307.1| exonuclease [Propionibacterium acnes HL005PA4] gi|314917800|gb|EFS81631.1| exonuclease [Propionibacterium acnes HL050PA1] gi|314919473|gb|EFS83304.1| exonuclease [Propionibacterium acnes HL050PA3] gi|314925898|gb|EFS89729.1| exonuclease [Propionibacterium acnes HL036PA3] gi|314930232|gb|EFS94063.1| exonuclease [Propionibacterium acnes HL067PA1] gi|314957046|gb|EFT01152.1| exonuclease [Propionibacterium acnes HL027PA1] gi|314957661|gb|EFT01764.1| exonuclease [Propionibacterium acnes HL002PA1] gi|314960727|gb|EFT04828.1| exonuclease [Propionibacterium acnes HL002PA2] gi|314963399|gb|EFT07499.1| exonuclease [Propionibacterium acnes HL082PA1] gi|314968946|gb|EFT13044.1| exonuclease [Propionibacterium acnes HL037PA1] gi|314972968|gb|EFT17064.1| exonuclease [Propionibacterium acnes HL053PA1] gi|314975485|gb|EFT19580.1| exonuclease [Propionibacterium acnes HL045PA1] gi|314979437|gb|EFT23531.1| exonuclease [Propionibacterium acnes HL072PA2] gi|314984227|gb|EFT28319.1| exonuclease [Propionibacterium acnes HL005PA1] gi|314986027|gb|EFT30119.1| exonuclease [Propionibacterium acnes HL005PA2] gi|314988810|gb|EFT32901.1| exonuclease [Propionibacterium acnes HL005PA3] gi|315077249|gb|EFT49311.1| exonuclease [Propionibacterium acnes HL053PA2] gi|315079928|gb|EFT51904.1| exonuclease [Propionibacterium acnes HL078PA1] gi|315083258|gb|EFT55234.1| exonuclease [Propionibacterium acnes HL027PA2] gi|315086971|gb|EFT58947.1| exonuclease [Propionibacterium acnes HL002PA3] gi|315089896|gb|EFT61872.1| exonuclease [Propionibacterium acnes HL072PA1] gi|315096775|gb|EFT68751.1| exonuclease [Propionibacterium acnes HL038PA1] gi|315097845|gb|EFT69821.1| exonuclease [Propionibacterium acnes HL059PA2] gi|315100750|gb|EFT72726.1| exonuclease [Propionibacterium acnes HL046PA1] gi|315109298|gb|EFT81274.1| exonuclease [Propionibacterium acnes HL030PA2] gi|327325340|gb|EGE67145.1| putative DNA polymerase III epsilon subunit [Propionibacterium acnes HL096PA2] gi|327325497|gb|EGE67300.1| putative DNA polymerase III epsilon subunit [Propionibacterium acnes HL096PA3] gi|327443771|gb|EGE90425.1| exonuclease [Propionibacterium acnes HL043PA1] gi|327449167|gb|EGE95821.1| exonuclease [Propionibacterium acnes HL043PA2] gi|327449503|gb|EGE96157.1| exonuclease [Propionibacterium acnes HL013PA2] gi|327451349|gb|EGE98003.1| exonuclease [Propionibacterium acnes HL087PA3] gi|327451673|gb|EGE98327.1| exonuclease [Propionibacterium acnes HL092PA1] gi|327452136|gb|EGE98790.1| exonuclease [Propionibacterium acnes HL083PA2] gi|328752391|gb|EGF66007.1| exonuclease [Propionibacterium acnes HL087PA1] gi|328755047|gb|EGF68663.1| exonuclease [Propionibacterium acnes HL025PA2] gi|328755908|gb|EGF69524.1| exonuclease [Propionibacterium acnes HL020PA1] gi|328761056|gb|EGF74607.1| putative DNA polymerase III epsilon subunit [Propionibacterium acnes HL099PA1] gi|332676124|gb|AEE72940.1| putative DNA polymerase III epsilon subunit [Propionibacterium acnes 266] Length = 210 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 58/176 (32%), Gaps = 13/176 (7%) Query: 9 KIVFDIET----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + D ET G+ + ++ V++LD +R + P +S E LHG Sbjct: 43 FVAVDFETANRMGGVSA-----CQVAMVKVLDGQIVDR-LNTLIRPPKGWDSFEFTYLHG 96 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + D P + +I F + A AHNA FD + L Sbjct: 97 ISAADVADAPGWINIADTVSHFVDG--ATVYAHNAAFDSRVWRQLDEHFGTTTLPAPFFC 154 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + A+R P N + H A D+ + + ++ Sbjct: 155 -SYRTAQRLIPGLPNYKLPTVLHACAPNYQLNHHRADSDAEACALIVCELQRRAQT 209 >gi|164686248|ref|ZP_02210278.1| hypothetical protein CLOBAR_02686 [Clostridium bartlettii DSM 16795] gi|164601850|gb|EDQ95315.1| hypothetical protein CLOBAR_02686 [Clostridium bartlettii DSM 16795] Length = 174 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 17/178 (9%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD------YSKTNRTFQVFLCPNGRK 54 M + N + IV D+ETTGLD + G + +K R + + P G Sbjct: 1 MNKYNDDKYIVVDLETTGLDPFS------GCEIIEIGITEIVNNKIGRNYSRLVKPKGI- 53 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 + IT++ ++D S ++ F + + AHNAKFD+ F+N L + Sbjct: 54 IPSHITNITSITNDMVEDAESLETVLPNFRKYVGDTTII--AHNAKFDLKFLNYYLDLLG 111 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + ++ + + + L + C Y I H H A D+ + +++ Sbjct: 112 LEKINNHICTLEMLKRCKSYKGKNKKLETACNYYNIVNEHA--HRANSDTLATAKLFL 167 >gi|223933999|ref|ZP_03625955.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis 89/1591] gi|223897336|gb|EEF63741.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis 89/1591] Length = 822 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+E TG + +II+IG V + + ++ + P L GITD Sbjct: 12 RYAVVDLEATGTGTD-AKIIQIGIVLVENGEII-DSYATDINP-YELLDDHIKNLTGITD 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 + L P F + S +D + A ++AHN KFD Sbjct: 69 QQLSQAPDFGQVASTIYDMIGD--AIFVAHNVKFDAN 103 >gi|296876164|ref|ZP_06900218.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit [Streptococcus parasanguinis ATCC 15912] gi|296432875|gb|EFH18668.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit [Streptococcus parasanguinis ATCC 15912] Length = 817 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 84/187 (44%), Gaps = 13/187 (6%) Query: 1 MIRKNKMRKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M R+ + + + D+E T G ++K II++G V + D T ++++ + P+ R Sbjct: 1 MTRQKR-KYAIVDLEATSAGSNAK---IIQVGIVIIEDGRIT-QSYETDVNPHER-LDEH 54 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 +L G+TD L+ P F+ + E ++ + A ++AHN KFD + + Sbjct: 55 IKQLTGLTDARLRKAPEFAQVAKEIFELIED--AVFVAHNVKFDANLLA--EALFWEGFE 110 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + IDT+ +++ +P+ + I H AL D+ + + +K+ Sbjct: 111 LTTPRIDTVELSQIFYPTLERYNL-GALAAELEIELHHAHSALADAMATAQLLLKLREKI 169 Query: 179 SQINFGF 185 + + G Sbjct: 170 ASLPRGL 176 >gi|218457859|ref|YP_002418864.1| putative DEDDH exonuclease [Pseudomonas phage SN] gi|218379127|emb|CAT99715.1| putative DEDDH exonuclease [Pseudomonas phage SN] Length = 184 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 61/175 (34%), Gaps = 10/175 (5%) Query: 7 MRKIVFDIETTGLDS-------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M V+D ETTGL K RIIE V + F+C G Sbjct: 1 MIFAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGEKILDEV--EFICNPGIVIEEII 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+ G+ +E L PSF + DF + IAHN FD + +L R + Sbjct: 59 TKITGLKNEDLVKHPSFLDQRHKVRDF-FSRADANIAHNLPFDKFMLTCDLARGKLGLEE 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + + + + KH AL D LL +V +M Sbjct: 118 VNFPSLDICTVEESARLFGHRMRLQHLYEHYCGPYVQKHRALDDVRLLHEVCKRM 172 >gi|118619457|ref|YP_907789.1| DNA polymerase III subunit epsilon [Mycobacterium ulcerans Agy99] gi|118571567|gb|ABL06318.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium ulcerans Agy99] Length = 329 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 7/201 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G + R+I + A+ L + L P G P +HG+T L Sbjct: 18 VVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGG---DPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D+P F+ I + + +AHN FD F+ AE + + + S + Sbjct: 75 EDQPQFADIVGDLTELLRG--RTLVAHNVAFDYSFLAAEAELTDAELPVDSVMCTVELAR 132 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R + L +L +G+T H A D+ +LS + + + + + Sbjct: 133 RLELGIDNLRLETLAAHWGVT--QERPHDAFDDALVLSGILAPALQRARERDVWLPIHPV 190 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 + V + L Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211 >gi|153821463|ref|ZP_01974130.1| exonuclease family [Vibrio cholerae B33] gi|229509131|ref|ZP_04398618.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases [Vibrio cholerae B33] gi|229608803|ref|YP_002879451.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Vibrio cholerae MJ-1236] gi|126521063|gb|EAZ78286.1| exonuclease family [Vibrio cholerae B33] gi|229353888|gb|EEO18823.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases [Vibrio cholerae B33] gi|229371458|gb|ACQ61881.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Vibrio cholerae MJ-1236] Length = 301 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 82/238 (34%), Gaps = 17/238 (7%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSK-TNRTFQVFLCPNGRKNSP 57 + M ++ D ETTGL ++++ IIE+G V++L ++ P G+ Sbjct: 49 EQPM--VLLDTETTGLSAEDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDP-GKPIPE 105 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 +L GITD+ ++ + S+ + + + +AHNA+FD F + Sbjct: 106 LITELTGITDDMVQGQHIDDSLVASW----LSDDPLVVAHNAQFDRPFFEKRFAALGHLS 161 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S + L L Y + HLL + ++ Sbjct: 162 WACSASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSE 221 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231 + + F ++ +K + I+++EL + + L Sbjct: 222 ADRRTVLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279 >gi|71737285|ref|YP_276026.1| ribonuclease T [Pseudomonas syringae pv. phaseolicola 1448A] gi|257486623|ref|ZP_05640664.1| ribonuclease T [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624955|ref|ZP_06457909.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650468|ref|ZP_06481811.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. 2250] gi|298488734|ref|ZP_07006763.1| Ribonuclease T [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|123635391|sp|Q48F11|RNT_PSE14 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|71557838|gb|AAZ37049.1| ribonuclease T [Pseudomonas syringae pv. phaseolicola 1448A] gi|298156807|gb|EFH97898.1| Ribonuclease T [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325627|gb|EFW81689.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. B076] gi|320327089|gb|EFW83103.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. race 4] gi|330867245|gb|EGH01954.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330879065|gb|EGH13214.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. race 4] gi|330889564|gb|EGH22225.1| ribonuclease T [Pseudomonas syringae pv. mori str. 301020] gi|331010105|gb|EGH90161.1| ribonuclease T [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 225 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + + T+ + P G AL+ G Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI R H A D+ ++++ ++ Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212 Query: 177 GGSQIN 182 ++ Sbjct: 213 RWKEMG 218 >gi|315224304|ref|ZP_07866138.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga ochracea F0287] gi|314945694|gb|EFS97709.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga ochracea F0287] Length = 442 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 7/175 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I +I + + T++ F + P R KL GI ++ Sbjct: 2 YAILDIETTGGKYNEEGITDIAIYQFNGHEITDQ-FISLINPE-RPIQEFVTKLTGINNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ P F + + + + HNA FD + E +R+ D + + LS Sbjct: 60 MLRNAPKFYEVAKRIVE--ITTDCIIVGHNAAFDYRILQTEFRRLGYDFVRTTLCTVELS 117 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + S + + I +H A D+ ++ ++ ++ + Sbjct: 118 ERLIPNKESYSL---GKLVRSLGIPVSDRHRASGDALATLKLFKYLLEKDTKKDI 169 >gi|291548714|emb|CBL24976.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Ruminococcus torques L2-14] Length = 168 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 6/168 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + FDIE+TGLD D I+++ + + F ++ K EA K++ I+ Sbjct: 1 MK-VFFDIESTGLDPVRDEILQLSIINENEEVL----FSDYIRLVRHKTWNEAEKINHIS 55 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +KDK +F S E +Q E IA+NA FD+ F+ A + P+ I + Sbjct: 56 PEMVKDKQTFESRKQEIQK-IFDQATELIAYNANFDISFLKAVGIVLPDVPISDPMIDFS 114 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L H +L D VY KM Sbjct: 115 FVYREYSEKYGIFKWQKLVVAARYYGYEFDAHDSLEDIKATKFVYDKM 162 >gi|183985197|ref|YP_001853488.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium marinum M] gi|183178523|gb|ACC43633.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium marinum M] Length = 329 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 74/201 (36%), Gaps = 7/201 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G + R+I + A+ L + L P P +HG+T L Sbjct: 18 VVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPG---VDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D+P F+ I + + +AHN FD F+ AE + + + S + Sbjct: 75 EDQPQFADIVGDLTELLRG--RTLVAHNVAFDYSFLAAEAELADAELPVDSVMCTVELAR 132 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R + L +L +G+T H A D+ +LS + + + + + Sbjct: 133 RLELGIDNLRLETLAAHWGVT--QERPHDAFDDALVLSGILAPALQRARERDVWLPIHPV 190 Query: 191 RFFKEEKKTVPNISLLKRDKP 211 + V + L Sbjct: 191 TRRRWPNGRVTHDELRPLKAL 211 >gi|281424653|ref|ZP_06255566.1| exonuclease [Prevotella oris F0302] gi|281401241|gb|EFB32072.1| exonuclease [Prevotella oris F0302] Length = 162 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 7/152 (4%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+ D ET +++ + +G V + D +R F + P + ++HG+ Sbjct: 1 MKDFAAIDFET--ANNERTSVCSVGLVVIRDGEIADR-FYSLIHPEPDYYTYWNTRVHGL 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T P F ++ + + +AHN FD + A + D D S Sbjct: 58 TQADTNHAPIFPEVWRKVESLIVD--LPLVAHNKAFDESCLKAVFRCYQMDYPDYSFYC- 114 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSK 157 TL+ +RR P ++LN + R G ++ Sbjct: 115 TLAQSRRVWPQGHHNLNIIAARCGYDFTNHHH 146 >gi|93007423|ref|YP_579187.1| DNA polymerase III [Streptomyces phage mu1/6] gi|90568501|gb|ABD94180.1| DNA polymerase III [Streptomyces phage mu1/6] Length = 238 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R FD ETTG+D ++DRI+ AV L+ + T P G A +HG+ Sbjct: 7 RLCAFDTETTGVDVESDRIVT-AAVLLVGGGQPTETHTWLADP-GIDIPEAASAVHGV 62 >gi|327402957|ref|YP_004343795.1| DNA polymerase III subunit alpha [Fluviicola taffensis DSM 16823] gi|327318465|gb|AEA42957.1| DNA polymerase III, alpha subunit [Fluviicola taffensis DSM 16823] Length = 1463 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 68/247 (27%), Gaps = 30/247 (12%) Query: 9 KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL D R I+I + + P+G + Sbjct: 2 FLIFDTETTGLPRDWNAPLTDLDNWPRAIQIAWQLHDELGNLIEAKDYLIRPDGFDIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A ++HGI+ E ++ ++ ++ + N FD+ + AE R Sbjct: 62 AERIHGISTELALEQGQDLEDVIAEFNEVLRKSQFVVGQNIGFDLNIMGAEFLRTQVATN 121 Query: 119 DPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + + + H A D + Sbjct: 122 MHDLPVLDTCTEVTANLCKIPGGRGGKFKLPTLTELHSFLFNVPFGEAHNATADVEATTR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 + +++ K + F + + I + + Sbjct: 182 CFFELVRREVFTAEELKVELEFFNRFKIANPDFIQPIGLTHLNLKEASA----------- 230 Query: 230 TLGKNAI 236 L K A+ Sbjct: 231 KLKKQAV 237 >gi|282855067|ref|ZP_06264399.1| exonuclease [Propionibacterium acnes J139] gi|282581655|gb|EFB87040.1| exonuclease [Propionibacterium acnes J139] gi|314982129|gb|EFT26222.1| exonuclease [Propionibacterium acnes HL110PA3] gi|315090368|gb|EFT62344.1| exonuclease [Propionibacterium acnes HL110PA4] gi|315093651|gb|EFT65627.1| exonuclease [Propionibacterium acnes HL060PA1] gi|315103870|gb|EFT75846.1| exonuclease [Propionibacterium acnes HL050PA2] gi|327325415|gb|EGE67219.1| putative DNA polymerase III epsilon subunit [Propionibacterium acnes HL103PA1] Length = 210 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 13/175 (7%) Query: 9 KIVFDIET----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + D ET G+ + ++ V++ D +R + P +S E LHG Sbjct: 43 FVAVDFETANRMGGVSA-----CQVAMVKVCDGQIVDR-LNTLIRPPKGWDSFEFTYLHG 96 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + D PS+++I F + AHNA FD + L Sbjct: 97 ISAADVADAPSWTNIADTVSHFVDG--VTVYAHNAAFDSRVWRQLDEHFGTTTLPAPFFC 154 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + A+R P N + H A D+ + + ++ Sbjct: 155 -SYRTAQRLIPGLPNYKLPTVLHACAPNYQLNHHRADSDAEACALIVCELQRRAQ 208 >gi|260777448|ref|ZP_05886342.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260607114|gb|EEX33388.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 239 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGLDS+ D II IG V + N+ + P ++ + E++ +HGIT Sbjct: 49 FLAMDFETTGLDSEQDDIITIGTVPFNLNRIFINQAHHWTVRP-RQQLAEESVIIHGITH 107 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEW 94 + D P S ++ + + + Sbjct: 108 SDILDAPDLSEVYDQVLEQMAGKIMVV 134 >gi|256818923|ref|YP_003140202.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM 7271] gi|256580506|gb|ACU91641.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM 7271] Length = 442 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 7/175 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I +I + + T++ F + P R KL GI ++ Sbjct: 2 YAILDIETTGGKYNEEGITDIAIYQFNGHEITDQ-FISLINPE-RPIQEFVTKLTGINNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ P F + + + + HNA FD + E +R+ D + + LS Sbjct: 60 MLRNAPKFYEVAKRIVE--ITTDCIIVGHNAAFDYRILQTEFRRLGYDFVRTTLCTVELS 117 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + S + + I +H A D+ ++ ++ ++ + Sbjct: 118 ERLIPNKESYSL---GKLVRSLGIPVSDRHRASGDALATLKLFKYLLEKDTKKDI 169 >gi|257791384|ref|YP_003181990.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM 2243] gi|257475281|gb|ACV55601.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM 2243] Length = 367 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 76/211 (36%), Gaps = 8/211 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M FD+ET + +NDRI IGAV + P +++HGI Sbjct: 1 MLYTFFDVET--PNRRNDRICSIGAVVTDQDGTVVEKKSYLVNPES-SFDDINVRIHGIA 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +++ +F ++ + F + +AHNA+FD+ + L + T Sbjct: 58 PVDVRNAKTFPELWYDSLSAFFPVDGV-VAHNARFDLSVLTKTLVSYDIPSP-KMSYACT 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS-QINFGF 185 L ++++ L +C+ GI H A D+ V+ ++ +F Sbjct: 116 LDMSKKIDFIGGGKLPHVCEALGIE--LERHHQAESDATACMRVFWTLVGMAGCMPSFIA 173 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + K+ +IS + + Sbjct: 174 YEPGAKSCKKSGGRYRSISDKTKAMQWLIPL 204 >gi|220935624|ref|YP_002514523.1| ribonuclease T [Thioalkalivibrio sp. HL-EbGR7] gi|219996934|gb|ACL73536.1| ribonuclease T [Thioalkalivibrio sp. HL-EbGR7] Length = 216 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 68/187 (36%), Gaps = 13/187 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++++ AV L ++T + P G P++L+++G Sbjct: 20 VVVDVETGGFNPRTDALLQVAAVLLRMDPEGQLYRHQTLSFHVQPFEGANLDPKSLEVNG 79 Query: 65 ITDEFLKDKPSF--------SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I E + A + HNA FD+ FI+ +R Sbjct: 80 INPWHPLRIAHPEKDALATVFRGVREEMKLNACKRAILVGHNAGFDLSFIHQGAERAGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ + L + G+ S+ H A+ D+ +D++ ++ Sbjct: 140 RNPFHPFSSLDTVTLSAMAFGQTVLARAVQAAGMEWSNSEAHSAVYDAEKTADLFCHVIN 199 Query: 177 GGSQINF 183 + Sbjct: 200 RWGPVAM 206 >gi|50843187|ref|YP_056414.1| putative DNA polymerase III epsilon subunit (exonuclease) [Propionibacterium acnes KPA171202] gi|50840789|gb|AAT83456.1| putative DNA polymerase III epsilon subunit (exonuclease) [Propionibacterium acnes KPA171202] gi|314924210|gb|EFS88041.1| exonuclease [Propionibacterium acnes HL001PA1] gi|314964999|gb|EFT09098.1| exonuclease [Propionibacterium acnes HL082PA2] gi|315106149|gb|EFT78125.1| exonuclease [Propionibacterium acnes HL030PA1] Length = 236 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 13/175 (7%) Query: 9 KIVFDIET----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + D ET G+ + ++ V++ D +R + P +S E LHG Sbjct: 69 FVAVDFETANRMGGVSA-----CQVAMVKVCDGQIVDR-LNTLIRPPKGWDSFEFTYLHG 122 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + D PS+++I F + AHNA FD + L Sbjct: 123 ISAADVADAPSWTNIADTVSHFVDG--VTVYAHNAAFDSRVWRQLDEHFGTTTLPAPFFC 180 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + A+R P N + H A D+ + + ++ Sbjct: 181 -SYRTAQRLIPGLPNYKLPTVLHACAPNYQLNHHRADSDAEACALIVCELQRRAQ 234 >gi|85860590|ref|YP_462792.1| exonuclease [Syntrophus aciditrophicus SB] gi|85723681|gb|ABC78624.1| exonuclease [Syntrophus aciditrophicus SB] Length = 88 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%) Query: 3 RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFL 48 +++ R +V DIETTGL K II+IGAV L + +++ FQ + Sbjct: 27 KESDQRIVVLDIETTGLIPKRGHCIIKIGAVALKNNEISSK-FQNLI 72 >gi|261749409|ref|YP_003257094.1| bifunctional DNA polymerase III subunit alpha/DNA polymerase III, epsilon subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497501|gb|ACX83951.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase III, epsilon subunit (dnaQ) fusion protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 1435 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 67/213 (31%), Gaps = 17/213 (7%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++ D ETTGL + R+++I + P+ Sbjct: 2 YLIVDTETTGLPVNYNFPISNTENWPRVVQIAWQLHDFSGNLVEFKNFIIKPDHYDIPFN 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A K+HGIT+E + + + E++ I HN +FD+ I E R + Sbjct: 62 AFKIHGITNEIAEKNGEDLIFVLKEFKKSFEKSKYLIGHNLEFDIKVIECEFFRKKEQIS 121 Query: 119 DPSRIIDTLSIARRKHPS-------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + I + + + H A D + + Sbjct: 122 FKRKKILDTKEVSVSYCQLPGIRKKFKWPTLTELYYKLFGTKLSHSHNAANDVKATARCF 181 Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204 ++++ G + K +E+ + K IS Sbjct: 182 LELLRLGIISSENLKIDENFILQFRKLHQSTIS 214 >gi|311232722|gb|ADP85576.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio vulgaris RCH1] Length = 251 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPN 51 +V D+E TGL + D II + V + R F+ + P+ Sbjct: 48 FVVLDLEMTGLVPRRDAIIAVAGVTMRGERILAGRCFEAKMRPH 91 >gi|120603536|ref|YP_967936.1| exonuclease, RNase T and DNA polymerase III [Desulfovibrio vulgaris DP4] gi|120563765|gb|ABM29509.1| Exonuclease, RNase T and DNA polymerase III [Desulfovibrio vulgaris DP4] Length = 251 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPN 51 +V D+E TGL + D II + V + R F+ + P+ Sbjct: 48 FVVLDLEMTGLVPRRDAIIAVAGVTMRGERILAGRCFEAKMRPH 91 >gi|46578859|ref|YP_009667.1| exonulcease [Desulfovibrio vulgaris str. Hildenborough] gi|46448271|gb|AAS94926.1| exonulcease, putative [Desulfovibrio vulgaris str. Hildenborough] Length = 244 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPN 51 +V D+E TGL + D II + V + R F+ + P+ Sbjct: 41 FVVLDLEMTGLVPRRDAIIAVAGVTMRGERILAGRCFEAKMRPH 84 >gi|303240250|ref|ZP_07326769.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio cellulolyticus CD2] gi|302592160|gb|EFL61889.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio cellulolyticus CD2] Length = 211 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 81/215 (37%), Gaps = 13/215 (6%) Query: 7 MRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEA 59 M I++D+E L+SK + IIEIGA++L K TFQ F+ P+ +K P Sbjct: 1 MNYIIYDLE---LNSKPFKSKLPNEIIEIGAIKLDSDLKEIDTFQAFIKPHYFKKLFPVV 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + IT E + + SF I S F + + + + +N + +I L Sbjct: 58 KRKTKITQEDVNNAESFKEIISSFRKWIGDNSILISWGHDDVHHLLVNCKNNKITTSWLK 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + + + + P+ + S H AL D+ + ++ K Sbjct: 118 KNIDLQKQVSSIYEVPAGQRYSLENAINVLEIDVGESFHRALADARYTAQIFSK---TFD 174 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214 +++ + + K K ++ + + Sbjct: 175 RLDLSVFNSLEVKKKSIPKPKAIVAEKTKIELSVI 209 >gi|290968369|ref|ZP_06559909.1| exonuclease [Megasphaera genomosp. type_1 str. 28L] gi|290781556|gb|EFD94144.1| exonuclease [Megasphaera genomosp. type_1 str. 28L] Length = 221 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 9/143 (6%) Query: 7 MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSP 57 M+ + D E +D + IIEIGAV+L + K ++ ++CP + + Sbjct: 1 MKAVFVDFEMNPIDRRHQEARRICQGEIIEIGAVKLDEDGKEIGAYKEYICPEYTSQMNA 60 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 L GIT + L F ++F+ F + NE A + + + K Sbjct: 61 TCQALTGITMDMLTPAAHFQTVFAHFLAWCNEDAPNAYEMYAWSENDWHQLTCEMRLKQS 120 Query: 118 LDPSRIIDTLSIARRKHPSSRND 140 I + + + Sbjct: 121 DMNDPQIRWMLDHWQNFQQIFCN 143 >gi|237649440|ref|ZP_04523692.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae CCRI 1974] Length = 831 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 10/186 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 +++ R +V D+E T SK +II++G V + D + + P+ Sbjct: 15 IMKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIK 71 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+TD+ L P FS + + +D + ++AHN +FD + + Sbjct: 72 ELTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELR 127 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + + Sbjct: 128 NPRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMT 185 Query: 180 QINFGF 185 Q+ G Sbjct: 186 QLPKGL 191 >gi|301301275|ref|ZP_07207430.1| exonuclease [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851151|gb|EFK78880.1| exonuclease [Lactobacillus salivarius ACS-116-V-Col5a] Length = 177 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 5/175 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + + + F + P+ S +++HGIT Sbjct: 1 MNFVAIDFET--ANPKRYSACSLALTVVKNNQ-IADQFYSLIKPDT-DFSWRNIQVHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ +++ PSF ++ +F N +AHNA FD + L+ + + Sbjct: 57 EKQVQNAPSFPELWPHIQNF-FTPNNLIVAHNASFDSSVLLRTLEHYDITLPHYQLLDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + + + L+++C I + H + +Y + G Q+ Sbjct: 116 RTSKKFFKDLENHKLDTICNNLNIDLKHHHNALFDSTACAEILLYQANLFGEDQL 170 >gi|187777769|ref|ZP_02994242.1| hypothetical protein CLOSPO_01361 [Clostridium sporogenes ATCC 15579] gi|187774697|gb|EDU38499.1| hypothetical protein CLOSPO_01361 [Clostridium sporogenes ATCC 15579] Length = 286 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 71/187 (37%), Gaps = 19/187 (10%) Query: 7 MRKIVFDIETTGL-DSKN---------------DRIIEIGAVELLDYSKTNRTFQVFLCP 50 M I+FD+E + KN D IIEIGA++L D + +F+V++ P Sbjct: 1 MNYIIFDLEWNSFRNVKNHINYYKKFNKKTRFFDEIIEIGAMKLNDELECVDSFRVYIKP 60 Query: 51 N-GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN--AEWIAHNAKFDVGFIN 107 ++ +P ++L GI +E LK F F ++ + W + K I Sbjct: 61 TIYKELNPRIIELTGINNEDLKYGFDFKKALKHFKEWIGKDYILCSWCDSDIKVLKKNIE 120 Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 + I R L+ + I S + H AL DS L Sbjct: 121 YYNPNYKVESFLVPYIDIQKYCCEILEYGRRVSLHDIISTENIVPSTDTFHQALDDSKLT 180 Query: 168 SDVYIKM 174 DV+ KM Sbjct: 181 VDVFRKM 187 >gi|170752204|ref|YP_001783349.1| exonuclease RNase T and DNA polymerase III [Methylobacterium radiotolerans JCM 2831] gi|170659331|gb|ACB28381.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium radiotolerans JCM 2831] Length = 298 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 60/226 (26%), Gaps = 7/226 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHGI 65 V D+ETTG D D +IE+G ++ + R ++V L + E +L GI Sbjct: 43 VVDVETTGTDFGTDEVIELGILKFEYG-ASGRIYRVLDTLNQLQEPRKPIPVEITRLTGI 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRII 124 TD + + + + A + + + + Sbjct: 102 TDADVAGQRIDDAAVARIAADAAVVIAHNASFDWQMCEPRWPVFREKNWGCSCHQIPWRA 161 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + + + S R A ++ + Sbjct: 162 EGHEGLKLGYLLSDCGFFHRGHRAIDDCHALLALLARPLQASGQLALAALLATARKPTVR 221 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 +E R + + + +++++ + Sbjct: 222 LWAQGSPIETKELLKARRYRWSGRRRCWYVDLDEDQIEIERTFLSE 267 >gi|326335784|ref|ZP_08201964.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692023|gb|EGD33982.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 1485 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 71/230 (30%), Gaps = 20/230 (8%) Query: 9 KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL +D R ++I + + P+G + Sbjct: 2 YLIFDTETTGLPRNYNAPISDSENWPRAVQIAWQLHDHKGQLLEHKDFLITPDGFTIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----- 113 A ++HGI+ E + E ++ + + N FD+ + AE R Sbjct: 62 AERIHGISTELATKRGVSIHHVFEEFEKALAKTQYIVGQNIGFDIHIMGAEFYRYGVSSV 121 Query: 114 ----NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + I + + + + H A D + Sbjct: 122 LSKLPVLDTCTELTAELCRIPGGRAGKFKYPNLTELHEFLFGTPFAEAHNATADVEATAR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + +++ G + + +E ++K + I L +++ Sbjct: 182 CFFELLRRGEGFSPS-QVSEQAIRLIQEKYLSPIPLWGLHHINLKVASEK 230 >gi|253751390|ref|YP_003024531.1| ATP-dependent DNA helicase [Streptococcus suis SC84] gi|253753291|ref|YP_003026431.1| ATP-dependent DNA helicase [Streptococcus suis P1/7] gi|253755878|ref|YP_003029018.1| ATP-dependent DNA helicase [Streptococcus suis BM407] gi|251815679|emb|CAZ51270.1| putative ATP-dependent DNA helicase [Streptococcus suis SC84] gi|251818342|emb|CAZ56163.1| putative ATP-dependent DNA helicase [Streptococcus suis BM407] gi|251819536|emb|CAR45129.1| putative ATP-dependent DNA helicase [Streptococcus suis P1/7] Length = 822 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+E TG + +II+IG V + + ++ + P L GITD Sbjct: 12 RYAVVDLEATGTGTD-AKIIQIGIVLVENGEII-DSYATDINP-YELLDDHIKNLTGITD 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 + L P F + S +D + A ++AHN KFD Sbjct: 69 QQLSQAPDFGQVASTIYDMIGD--AIFVAHNVKFDAN 103 >gi|254850923|ref|ZP_05240273.1| exonuclease family [Vibrio cholerae MO10] gi|21885332|gb|AAL59738.1| unknown [Vibrio cholerae] gi|254846628|gb|EET25042.1| exonuclease family [Vibrio cholerae MO10] gi|259156302|gb|ACV96248.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ind4] Length = 302 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 82/238 (34%), Gaps = 17/238 (7%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSK-TNRTFQVFLCPNGRKNSP 57 + M ++ D ETTGL ++++ IIE+G V++L ++ P G+ Sbjct: 49 EQPM--VLLDTETTGLSAEDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDP-GKPIPE 105 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 +L GITD+ ++ + S+ + + + +AHNA+FD F + Sbjct: 106 LITELTGITDDMVQGQHIDDSLVASW----LSDDPLVVAHNAQFDRPFFEKRFAALGHLS 161 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S + L L Y + HLL + ++ Sbjct: 162 WACSASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSE 221 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231 + + F ++ +K + I+++EL + + L Sbjct: 222 ADRRAVLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279 >gi|254506426|ref|ZP_05118568.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 16] gi|219550600|gb|EED27583.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 16] Length = 210 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66 + D ETT LD ++ I A +++ + T+R F+V L P +S + Sbjct: 30 YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSRPFEVRLRAPQSLDSSSVKIHQMRHQ 89 >gi|160932735|ref|ZP_02080124.1| hypothetical protein CLOLEP_01576 [Clostridium leptum DSM 753] gi|156867809|gb|EDO61181.1| hypothetical protein CLOLEP_01576 [Clostridium leptum DSM 753] Length = 293 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 77/214 (35%), Gaps = 8/214 (3%) Query: 7 MRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEAL 60 M ++ D+E G SK + IIE GAV++ D TF V + P G+K S + Sbjct: 1 MEFVILDLEWNGTYSKRKSGFFNEIIEFGAVKVNDRLCVEDTFSVVVKPQIGKKLSSKVK 60 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L I+ E L +++ S+F F N W + + D ++ Sbjct: 61 NLTNISSEELGLGVTYTRAVSKFKKFLGNAVLMTWGTSDILALMENHQYYWGTDRLDYIE 120 Query: 120 PSRIID-TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + + L++ + GI + H AL DS L + ++ Sbjct: 121 GYVNLQSFCERRVYYERGKQMGLSTAAQLLGIDVQGMEHHRALDDSLLALACFRRLYDEE 180 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 F ++D+F+ + + + L Sbjct: 181 ELKPFFEDASKDQFYDKMRFKTTILCDLSNPLLK 214 >gi|145295430|ref|YP_001138251.1| hypothetical protein cgR_1367 [Corynebacterium glutamicum R] gi|140845350|dbj|BAF54349.1| hypothetical protein [Corynebacterium glutamicum R] Length = 197 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 16/33 (48%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 + + D+ETTGL +I+ IG V + Sbjct: 14 KLLAVDVETTGLKPHRHQIVSIGWVPINGDVID 46 >gi|62390175|ref|YP_225577.1| DNA polymerase III, epsilon subunit [Corynebacterium glutamicum ATCC 13032] gi|41325511|emb|CAF19991.1| DNA POLYMERASE III, EPSILON SUBUNIT, PUTATIVE [Corynebacterium glutamicum ATCC 13032] Length = 197 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 16/33 (48%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 + + D+ETTGL +I+ IG V + Sbjct: 14 KLLAVDVETTGLKPHRHQIVSIGWVPINGDVID 46 >gi|19552509|ref|NP_600511.1| DNA polymerase III epsilon subunit [Corynebacterium glutamicum ATCC 13032] gi|21324057|dbj|BAB98682.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases [Corynebacterium glutamicum ATCC 13032] Length = 218 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 16/33 (48%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 + + D+ETTGL +I+ IG V + Sbjct: 35 KLLAVDVETTGLKPHRHQIVSIGWVPINGDVID 67 >gi|119774662|ref|YP_927402.1| DNA polymerase III subunit epsilon-related 3'-5' exonuclease-like protein [Shewanella amazonensis SB2B] gi|119767162|gb|ABL99732.1| DNA polymerase III epsilon subunit-related 3'-5' exonuclease-like protein [Shewanella amazonensis SB2B] Length = 228 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39 M M + D+E TGLD D+I+ IG V + Sbjct: 37 MAESAPM--LALDLEMTGLDPGRDQILAIGVVPIDGGII 73 >gi|332204813|gb|EGJ18878.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA47901] Length = 816 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|332202666|gb|EGJ16735.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA41317] Length = 816 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|307127646|ref|YP_003879677.1| DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae 670-6B] gi|306484708|gb|ADM91577.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae 670-6B] Length = 816 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|303255784|ref|ZP_07341825.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS455] gi|303260270|ref|ZP_07346241.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP-BS293] gi|303261476|ref|ZP_07347424.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP14-BS292] gi|303264144|ref|ZP_07350065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS397] gi|303266246|ref|ZP_07352137.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS457] gi|303268684|ref|ZP_07354474.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS458] gi|301801646|emb|CBW34344.1| putative exonuclease [Streptococcus pneumoniae INV200] gi|302597168|gb|EFL64273.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS455] gi|302637610|gb|EFL68097.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP14-BS292] gi|302638594|gb|EFL69058.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP-BS293] gi|302641744|gb|EFL72101.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS458] gi|302644176|gb|EFL74432.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS457] gi|302646549|gb|EFL76775.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS397] Length = 816 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|301793959|emb|CBW36355.1| putative exonuclease [Streptococcus pneumoniae INV104] Length = 816 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|225861294|ref|YP_002742803.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae Taiwan19F-14] gi|298230625|ref|ZP_06964306.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255368|ref|ZP_06978954.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503192|ref|YP_003725132.1| DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae TCH8431/19A] gi|225726410|gb|ACO22261.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae Taiwan19F-14] gi|298238787|gb|ADI69918.1| DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae TCH8431/19A] Length = 816 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|225856476|ref|YP_002737987.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae P1031] gi|225724714|gb|ACO20566.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae P1031] Length = 816 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|225858612|ref|YP_002740122.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae 70585] gi|225720171|gb|ACO16025.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae 70585] Length = 816 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|182683721|ref|YP_001835468.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14] gi|182629055|gb|ACB90003.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14] Length = 816 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|169833275|ref|YP_001694265.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae Hungary19A-6] gi|168995777|gb|ACA36389.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae Hungary19A-6] gi|327390159|gb|EGE88502.1| putative dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA04375] Length = 816 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|168490899|ref|ZP_02715042.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC0288-04] gi|221231602|ref|YP_002510754.1| exonuclease [Streptococcus pneumoniae ATCC 700669] gi|225854318|ref|YP_002735830.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae JJA] gi|183574742|gb|EDT95270.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC0288-04] gi|220674062|emb|CAR68575.1| putative exonuclease [Streptococcus pneumoniae ATCC 700669] gi|225723482|gb|ACO19335.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae JJA] Length = 816 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|168486184|ref|ZP_02710692.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC1087-00] gi|183570792|gb|EDT91320.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC1087-00] Length = 816 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|168484461|ref|ZP_02709413.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC1873-00] gi|172042316|gb|EDT50362.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC1873-00] gi|332203958|gb|EGJ18025.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA47368] Length = 816 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|148985845|ref|ZP_01818939.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP3-BS71] gi|148990415|ref|ZP_01821581.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP6-BS73] gi|168575465|ref|ZP_02721401.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae MLV-016] gi|194397188|ref|YP_002037447.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae G54] gi|307067407|ref|YP_003876373.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200] gi|147921991|gb|EDK73115.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP3-BS71] gi|147924320|gb|EDK75413.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP6-BS73] gi|183578476|gb|EDT99004.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae MLV-016] gi|194356855|gb|ACF55303.1| Dna polymerase III, epsylon subunit/ATP-dependent helicase DinG [Streptococcus pneumoniae G54] gi|301799817|emb|CBW32386.1| putative exonuclease [Streptococcus pneumoniae OXC141] gi|306408944|gb|ADM84371.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200] Length = 816 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|149010565|ref|ZP_01831936.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP19-BS75] gi|147765046|gb|EDK71975.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP19-BS75] Length = 816 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|149003435|ref|ZP_01828324.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP14-BS69] gi|237821000|ref|ZP_04596845.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae CCRI 1974M2] gi|147758618|gb|EDK65616.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP14-BS69] Length = 816 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|148997118|ref|ZP_01824772.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP11-BS70] gi|147756818|gb|EDK63858.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP11-BS70] Length = 816 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|148992472|ref|ZP_01822167.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP9-BS68] gi|149007688|ref|ZP_01831305.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP18-BS74] gi|168489814|ref|ZP_02714013.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae SP195] gi|147760843|gb|EDK67814.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP18-BS74] gi|147928789|gb|EDK79802.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP9-BS68] gi|183571801|gb|EDT92329.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae SP195] gi|332077219|gb|EGI87681.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA17545] Length = 816 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|297581761|ref|ZP_06943683.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297534168|gb|EFH73007.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 209 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 74/171 (43%), Gaps = 7/171 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETT LD K ++ I A ++ + T++ F+V LC + ++++H I Sbjct: 30 YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLC-APQSLDSGSVRIHRIRH 88 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L D S + +F N + ++ ++D ++ ++ PL I + Sbjct: 89 QDLHDGLSEKEALIQLIEFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQ 146 Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + P++ DL+ + + + KH AL D+ + V++++ Sbjct: 147 IYHDKLEKHLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIAAALVFVRLT 197 >gi|325297417|ref|YP_004257334.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] gi|324316970|gb|ADY34861.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] Length = 183 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 9/172 (5%) Query: 8 RKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 I D ET T K I E G + + T + P G S +++HGI Sbjct: 5 NFIAIDFETAT---RKRASICEAGICVVRNGK-VAETRSWLIRPEGNYYSYWNMQIHGIR 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ P F I+++ ++ E +AHNA FD+G I LQ + D + Sbjct: 61 PSDTENAPEFPEIWTKITEYLGE-CPVLVAHNAIFDIGCIRHSLQFYHIKKPDITYYCSL 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + + + I +R H A D+ + + ++++ + Sbjct: 120 RAARKLYNFDCNKLD---YLCDQFEIPYRLHHRAGDDAEMCARLFLREIRDA 168 >gi|303235494|ref|ZP_07322106.1| exonuclease [Prevotella disiens FB035-09AN] gi|302484293|gb|EFL47276.1| exonuclease [Prevotella disiens FB035-09AN] Length = 183 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 7/170 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 I D ET + I E + ++ K T + P G + ++HGIT Sbjct: 5 NFIAIDFET--ASNAQAAICE-AGISIVKGGKVVETRSWLVRPEGNAYNYWNTRVHGITA 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P F +++E + + +AHNA FD+G I L + + Sbjct: 62 KDTAHAPEFPQVWNEIMTYLAD-CPILVAHNAGFDMGCIRRSLAFYGLKTPEITYYCSLR 120 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + I + H A D+ + + ++++ + Sbjct: 121 AARKIYDFECNKLEF---LCQKFEIPYGQHHRAGDDAAMCAHLFLRELKD 167 >gi|261250461|ref|ZP_05943036.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891] gi|260939030|gb|EEX95017.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891] Length = 210 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 75/181 (41%), Gaps = 8/181 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETT LD ++ I A +++ + T++ F+V L + ++K+H I Sbjct: 30 FVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLR-APQSLDSGSVKIHHIRH 88 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L D + +F N + ++ ++D ++ ++ PL I + Sbjct: 89 QDLADGIDEKQALIQLLEFI--GNRPLVGYHIRYDKKILDLACRKQLGFPLPNPLIEVSQ 146 Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + P++ DL+ + + ++KH AL D+ + +++++ G + Sbjct: 147 IYHDKLEKHLPNAYFDLSLDAICKHLDLPLQNKHDALQDAIAAALIFVRLT-KGDLPSLN 205 Query: 185 F 185 Sbjct: 206 L 206 >gi|88808413|ref|ZP_01123923.1| Exonuclease [Synechococcus sp. WH 7805] gi|88787401|gb|EAR18558.1| Exonuclease [Synechococcus sp. WH 7805] Length = 272 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 10/167 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++ D ETTGLD+ D+ +E+GA+ + + + L N E++ Sbjct: 43 RLLIVDTETTGLDADRDQCLEVGAILFSVPHRQVLAQMSCLL--PVDSNPAESINRIPAE 100 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ +++ +AHNA FD + + + ++ Sbjct: 101 VSRVEQP---WGDGLAWFERMMMSADYLVAHNAAFDRQWFGRG--ALPEAKRPWLCTLED 155 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + ++ +R + L YGI + H AL D L++V+ + Sbjct: 156 IRWPEARNLKARPSVIDLALAYGIPVWSA--HRALTDCIYLAEVFQR 200 >gi|161833722|ref|YP_001597918.1| putative DNA polymerase III subunit alpha (dnaE)/DNA polymerase III, epsilon subunit (dnaQ) fusion [Candidatus Sulcia muelleri GWSS] gi|152206212|gb|ABS30522.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase III, epsilon subunit (dnaQ) fusion [Candidatus Sulcia muelleri GWSS] Length = 1411 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 69/187 (36%), Gaps = 17/187 (9%) Query: 9 KIVFDIETTGLDSKND------------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 I+FD ETTGL D R++++ V L + + + P G + Sbjct: 2 YIIFDTETTGLPLPKDFNPPIINIINLPRLVKLSWVLLDEKLQLIELKDYIIKPEGYEIP 61 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + K+HGI+ ++ +K + E ++ +++ I HN FD+ + AE RINK Sbjct: 62 FNSTKIHGISTKYAIEKGIKINFVLEEFNLIIKKSNFLIGHNVFFDIKIVCAEFIRINKK 121 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVY 171 + I + + + + H + D + + Sbjct: 122 ISFFKKKIIDTKEISINYCAIKMGEKFKWPTLTELYKKLFNDTFIAHDSKSDVLATTKCF 181 Query: 172 IKMMVGG 178 +++ G Sbjct: 182 FELLRIG 188 >gi|322373090|ref|ZP_08047626.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. C150] gi|321278132|gb|EFX55201.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. C150] Length = 828 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 8/181 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M KN + + D+E T S II++G V + + + F + P+ +K + Sbjct: 1 MSEKNTNKYAIVDLEAT-FASSMASIIQVGIVIMQNGQVIDE-FASDVNPH-QKLDDHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I + +D + ++AHN KFD ++ + Sbjct: 58 HLTGITDQQLAQAPDFSEIARKIFDLIED--CIFVAHNVKFDANLLS--EALFMEGYELR 113 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +DT+ +A+ +P+ + S + + + H A+ D+ + +M + Sbjct: 114 TPRVDTVELAQVFYPTLEHYKLSHLSKV-LNLDLAQAHTAIEDARATGQLLFHLMDKIAS 172 Query: 181 I 181 + Sbjct: 173 L 173 >gi|237749183|ref|ZP_04579663.1| oligoribonuclease [Oxalobacter formigenes OXCC13] gi|229380545|gb|EEO30636.1| oligoribonuclease [Oxalobacter formigenes OXCC13] Length = 206 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 20/29 (68%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +++M I D+E TGLD + DRIIE+ V Sbjct: 28 RSEMNLIWVDLEMTGLDPETDRIIEVAVV 56 >gi|227548945|ref|ZP_03978994.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum DSM 44291] gi|227078970|gb|EEI16933.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum DSM 44291] Length = 472 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 76/209 (36%), Gaps = 7/209 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITD 67 + FD+ET + I +IG V ++D + R T+ P + P + +HGI+ Sbjct: 122 FVGFDVET--ANPAWGSICQIGLVRVIDGREVERVTWLCTPPPGLDEFDPSNVAIHGISA 179 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ P + E +F E +AHNA+FD + + + +D + Sbjct: 180 ETVEGSPPAAQRIDELVEFVGE--LPVVAHNAQFDATALREACRAVGRDIPNIMFACTLA 237 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 K + L +L + +G+ H A D+ + + + + Sbjct: 238 QSRAAKLKVQNHRLPTLAEHFGVQ--LEKHHDAGEDAAACAGILVGLARDAGHEGSVMSF 295 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F ++ + RD+ R Sbjct: 296 VHATGFTLGVINDERVTPVLRDRSGTARA 324 >gi|254425359|ref|ZP_05039077.1| exonuclease family [Synechococcus sp. PCC 7335] gi|196192848|gb|EDX87812.1| exonuclease family [Synechococcus sp. PCC 7335] Length = 273 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 57/171 (33%), Gaps = 6/171 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG N R+IE+ + L D + ++ + P + ++ GIT E Sbjct: 33 VVDVETTGALGHNARVIEVSVLHASLADGLEHQESY--LINPQVK-IPEYITRITGITPE 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P E + + AHN FD F+ E +R+ P Sbjct: 90 MVYSSPP-PEEIWPKCQPLLEGDRVFTAHNLDFDYSFLRTEYKRLGIRFYKPPLQKLCTV 148 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I R + + + H A D+ + ++ Sbjct: 149 ILSRMLLADLPSRSLPNLIKHFNFDIDTSHRAEADTKACWLLAKTLLTQIQ 199 >gi|302023531|ref|ZP_07248742.1| ATP-dependent DNA helicase [Streptococcus suis 05HAS68] Length = 822 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+E TG + +II+IG V + + ++ + P L GITD Sbjct: 12 RYAVVDLEATGTGTD-AKIIQIGIVLVENGEII-DSYATDINP-YELLDDHIKNLTGITD 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 + L P F + S +D + A ++AHN KFD Sbjct: 69 QQLSQAPDFGQVASTIYDMIGD--AIFVAHNVKFDAN 103 >gi|237750780|ref|ZP_04581260.1| DNA polymerase III subunit epsilon [Helicobacter bilis ATCC 43879] gi|229373225|gb|EEO23616.1| DNA polymerase III subunit epsilon [Helicobacter bilis ATCC 43879] Length = 268 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 5/114 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 DIETT KN +IIEIGA+ + TF + + + L GI L Sbjct: 82 FVDIETTSASVKNGQIIEIGAIIAQNGEIL-DTFDTLVYSP--FVPEDIIDLTGIDSYML 138 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 +D P + +F F + + ++AHN FD FI L + PL R+ Sbjct: 139 EDAPRLEQVLKQFRAFLGD--SVFVAHNVSFDYNFIAESLHEYDMPPLFNPRLC 190 >gi|227524779|ref|ZP_03954828.1| DNA-directed DNA polymerase III [Lactobacillus hilgardii ATCC 8290] gi|227088056|gb|EEI23368.1| DNA-directed DNA polymerase III [Lactobacillus hilgardii ATCC 8290] Length = 177 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 58/176 (32%), Gaps = 10/176 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M D ET ++K + V + + T+ F + P S + +HGI Sbjct: 1 MNFAAMDFET--ANAKRASACSLALVIVRNNQVTHE-FYSLINPET-DFSWRNINVHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + P+F + N +AHNA FD + L+R + + Sbjct: 57 KQDVANAPTF-PELWDHIAPLFTANKLVVAHNASFDNSVLKRTLERYDLLLPHYLTLDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + + + LN++C I + H + ++ Q Sbjct: 116 KTSKQFYPQMVNHKLNTVCDELHIELEHHHNALDDSVACANI-----LLTQQQQFG 166 >gi|126010887|ref|YP_001039857.1| putative exonuclease [Vibrio phage VP882] gi|123203897|gb|ABM73410.1| putative exonuclease [Vibrio phage VP882] Length = 206 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 14/174 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ETTGLDSK IIEI ++ + P +A ++HGIT+E + Sbjct: 17 ILDTETTGLDSK-AEIIEISIIDCAGNVL----LDTLVKP-TAPIPEDATRIHGITNEMV 70 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P++ ++ F + + +NA +D+ I +R + + L+ A Sbjct: 71 ANAPTWPEVYDLFVPLVEGRE--LVIYNADYDLRMIRQADERNDLLNIRTQADCAMLAYA 128 Query: 131 RRKHPS------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + + + H AL D + V M Sbjct: 129 EFYGQWDDYRGQWKWQRLGNAAKQQGVVIEGKAHRALADCQMTLGVIASMAGQW 182 >gi|330973093|gb|EGH73159.1| ribonuclease T [Pseudomonas syringae pv. aceris str. M302273PT] Length = 213 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 13/193 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + + T+ + P G AL+ G Sbjct: 21 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 80 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HNA FD+GF+NA + R++ Sbjct: 81 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 140 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI R H A D+ ++++ ++ Sbjct: 141 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 200 Query: 177 GGSQINFGFKTNE 189 ++ ++ Sbjct: 201 RWKEMGGWQDFDD 213 >gi|66047122|ref|YP_236963.1| ribonuclease T [Pseudomonas syringae pv. syringae B728a] gi|302184721|ref|ZP_07261394.1| ribonuclease T [Pseudomonas syringae pv. syringae 642] gi|75500938|sp|Q4ZPJ7|RNT_PSEU2 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|63257829|gb|AAY38925.1| Ribonuclease T [Pseudomonas syringae pv. syringae B728a] Length = 225 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 13/193 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + + T+ + P G AL+ G Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI R H A D+ ++++ ++ Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212 Query: 177 GGSQINFGFKTNE 189 ++ ++ Sbjct: 213 RWKEMGGWQDFDD 225 >gi|182435215|ref|YP_001822934.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp. griseus NBRC 13350] gi|326775853|ref|ZP_08235118.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf. griseus XylebKG-1] gi|178463731|dbj|BAG18251.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656186|gb|EGE41032.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf. griseus XylebKG-1] Length = 236 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 18/40 (45%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 FD+ETTG D +NDRI+ V L L P Sbjct: 11 FDLETTGTDVENDRIVTAALVRLDADGTVAEQRTWLLDPG 50 >gi|264676215|ref|YP_003276121.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2] gi|262206727|gb|ACY30825.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2] Length = 214 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 5/115 (4%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ ++ R E+ V L +R FQ + G SP +L GIT+ Sbjct: 8 VIDFETTGMTPAQGARATEVAIVLLEQGRVVDR-FQSLMQ-TGAWVSPFITELTGITNAM 65 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 L+ P + + + F AHNA FD F AEL + Sbjct: 66 LRTAPPAAEVMRDAARFVGAAPMV--AHNASFDSKFWQAELALAGEAAPQLFACT 118 >gi|168492961|ref|ZP_02717104.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC3059-06] gi|183577104|gb|EDT97632.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC3059-06] Length = 816 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D +N ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLV--ENGIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|299531122|ref|ZP_07044534.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44] gi|298720825|gb|EFI61770.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44] Length = 213 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 5/115 (4%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ ++ R E+ V L +R FQ + G SP +L GIT+ Sbjct: 7 VIDFETTGMTPAQGARATEVAIVLLEQGRVVDR-FQSLMQ-TGAWVSPFITELTGITNAM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 L+ P + + + F AHNA FD F AEL + Sbjct: 65 LRTAPPAAEVMRDAARFVGAAPMV--AHNASFDSKFWQAELALAGEAAPQLFACT 117 >gi|237798772|ref|ZP_04587233.1| ribonuclease T [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021625|gb|EGI01682.1| ribonuclease T [Pseudomonas syringae pv. oryzae str. 1_6] Length = 225 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 13/193 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP------NGRKNSPEA 59 +V D+ET G +S D ++EI AV + + T+ + P Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116 +KL + ++ + + IF + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAINDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI R H A D+ ++++ ++ Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212 Query: 177 GGSQINFGFKTNE 189 ++ ++ Sbjct: 213 RWKEMGGWQDFDD 225 >gi|330950000|gb|EGH50260.1| ribonuclease T [Pseudomonas syringae Cit 7] Length = 225 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + + T+ + P G AL+ G Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI R H A D+ ++++ ++ Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212 Query: 177 GGSQIN 182 ++ Sbjct: 213 RWKEMG 218 >gi|317505657|ref|ZP_07963560.1| exonuclease [Prevotella salivae DSM 15606] gi|315663242|gb|EFV03006.1| exonuclease [Prevotella salivae DSM 15606] Length = 175 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 7/158 (4%) Query: 1 MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 +I M+ D ET + K + +G V + + +R F + P + Sbjct: 8 LIFAVIMKDFAAIDFET--ANGKRTSVCSVGVVIVRNGMIVDR-FYSLIHPEPDYYTYWN 64 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HG+T + P F ++ + +AHN FD + A + D Sbjct: 65 TKMHGLTQADTNNAPIFPEVWRKIMPLI--DQLPLVAHNKAFDESCLKAVFKCYQMTYPD 122 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK 157 L P R++L + R G ++ Sbjct: 123 YIFHCTLLKSRSV-WPQGRHNLGIIAARCGYNLTQHHH 159 >gi|289676753|ref|ZP_06497643.1| ribonuclease T [Pseudomonas syringae pv. syringae FF5] Length = 225 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + + T+ + P G AL+ G Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI R H A D+ ++++ ++ Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212 Query: 177 GGSQIN 182 ++ Sbjct: 213 RWKEMG 218 >gi|255021102|ref|ZP_05293155.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC 51756] gi|254969516|gb|EET27025.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC 51756] Length = 475 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+E TG + DRIIE+G + + + + + P R SP L GI L Sbjct: 11 FIDLENTGGHLERDRIIEVGIILVAPAGEP-EVWSTLINPEIR-LSPAISTLTGIDPADL 68 Query: 71 KDKPSFSSIFSEFWDFF 87 P+F+ + + Sbjct: 69 AHAPTFAQVAEPLREKL 85 >gi|294793582|ref|ZP_06758719.1| putative exonuclease family protein [Veillonella sp. 3_1_44] gi|294455152|gb|EFG23524.1| putative exonuclease family protein [Veillonella sp. 3_1_44] Length = 327 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 25/205 (12%) Query: 7 MRKIVFDIE--------------T----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 M IVFD+E T TG II+IGAV+L + F +F+ Sbjct: 1 MNYIVFDLEWNQPYSNDISFMKRTKMPLTG------EIIQIGAVKLNEKMDIIDHFTMFI 54 Query: 49 CPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 P + +L GIT L F + F + ++ + + N Sbjct: 55 KPQYLTRMHKHVRELTGITTHELNHGVPFKTAMQYFQKWCGDEYMLLSWGSDDILILREN 114 Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 L ++ D + +R S + + + I+ H S H AL D+ Sbjct: 115 LMLHKMKALSYDQWVDAQMIYSYQRYGTSQQYSVAHAMEDLNISTEHLSAHNALHDAVFT 174 Query: 168 SDVYIKMMVGGSQINFGFKTNEDRF 192 + + + + +++ E Sbjct: 175 AHICQTLDIAQGILHYDLIRKESSN 199 >gi|255743723|ref|ZP_05417681.1| polymerase epsilon subunit like protein [Vibrio cholera CIRS 101] gi|255738584|gb|EET93971.1| polymerase epsilon subunit like protein [Vibrio cholera CIRS 101] gi|259156231|gb|ACV96178.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ban5] gi|259156377|gb|ACV96322.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ind5] Length = 301 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 80/238 (33%), Gaps = 17/238 (7%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSK-TNRTFQVFLCPNGRKNSP 57 + M ++ D ETTGL + ++ IIE+G V++L ++ P G+ Sbjct: 49 EQPM--VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDP-GKPIPE 105 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 +L GITDE ++ + ++ + + + +AHNA+FD F Sbjct: 106 LITELTGITDEIVQGQRIDDAMVASW----LSDDPLVVAHNAQFDRPFFEKRFAAFGHLS 161 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S + L L Y + HLL + ++ Sbjct: 162 WACSASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSE 221 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231 + + F ++ +K + I+++EL + + L Sbjct: 222 ADRRTVLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279 >gi|238022741|ref|ZP_04603167.1| hypothetical protein GCWU000324_02650 [Kingella oralis ATCC 51147] gi|237865944|gb|EEP67080.1| hypothetical protein GCWU000324_02650 [Kingella oralis ATCC 51147] Length = 464 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 67/175 (38%), Gaps = 8/175 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D+ETTG DRI E+ + T Q + PN S L GI+DE Sbjct: 25 VILDLETTGGHFYADRITELAFLHFWQGKITAV--QQLVQPN-MPISGFVRDLTGISDEM 81 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ +P+F+ + + IAHN++FD F+ E +R + + ++ + Sbjct: 82 LQGQPTFAQFAPQVLPLLRG--SLLIAHNSRFDYTFLRHECRRNGFA--FATAGLCSVQL 137 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 +R+ +P H A+ D +++ + G Sbjct: 138 SRKLYPEFFKHNLDSIIERHGLAVASR-HRAMSDVLAVAEYLQLALREKGAPLLG 191 >gi|229187939|ref|ZP_04315044.1| exonuclease [Bacillus cereus BGSC 6E1] gi|228595536|gb|EEK53251.1| exonuclease [Bacillus cereus BGSC 6E1] Length = 181 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 11/144 (7%) Query: 5 NKM-----RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 NKM + ++ D ETTGL + D+IIEI ++L + P EA Sbjct: 16 NKMFINRDQFVILDTETTGL-TLRDQIIEICVIDLTGKIL----LNSLVKP-TINIPAEA 69 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGIT+E + D PS+ I+ E + + + + Sbjct: 70 ASIHGITNEKVHDAPSWIEIYKELCEVTAGKTLLIYNAEFDLGMIESTCFANNVEFKNFK 129 Query: 120 PSRIIDTLSIARRKHPSSRNDLNS 143 + I+ + + Sbjct: 130 STFIMKMYADYVDSKRWISLSDAT 153 >gi|159904464|ref|YP_001548126.1| hypothetical protein MmarC6_0068 [Methanococcus maripaludis C6] gi|159885957|gb|ABX00894.1| hypothetical protein MmarC6_0068 [Methanococcus maripaludis C6] Length = 153 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 14/28 (50%), Positives = 16/28 (57%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL 35 IV D ETTGL+ DRII IG + Sbjct: 3 NIIVLDTETTGLNPLTDRIITIGLWHVN 30 >gi|85711670|ref|ZP_01042727.1| DNA polymerase III subunit epsilon [Idiomarina baltica OS145] gi|85694530|gb|EAQ32471.1| DNA polymerase III subunit epsilon [Idiomarina baltica OS145] Length = 244 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 4/143 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 +I+ M + D ETTGLD + + I+ I V + ++ Q + P + + E+ Sbjct: 48 LIKDAPM--VAVDFETTGLDCQRNSIVSIAVVPMSAQRIFMSQARQWVVKP-RQDLTDES 104 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + +HGIT ++ P +I E D + + + + + Sbjct: 105 VVIHGITHSDIQSAPDIEAILPELLDLVAGKIWVVHYNGIERPFLQKAMDARFNEHIHFP 164 Query: 120 PSRIIDTLSIARRKHPSSRNDLN 142 + + R+ S + L Sbjct: 165 VIDTMAIEARFHRQRRSFWSRLM 187 >gi|313681496|ref|YP_004059234.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense DSM 16994] gi|313154356|gb|ADR33034.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense DSM 16994] Length = 267 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 + D+E+ G + +IIEIGAV+L + T++ + Sbjct: 67 IVDVESNGSKPAHHQIIEIGAVKLQNGKII-DTYESLV 103 >gi|227513634|ref|ZP_03943683.1| DNA-directed DNA polymerase III [Lactobacillus buchneri ATCC 11577] gi|227083150|gb|EEI18462.1| DNA-directed DNA polymerase III [Lactobacillus buchneri ATCC 11577] Length = 177 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 58/176 (32%), Gaps = 10/176 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M D ET ++K + V + + T+ F + P S + +HGI Sbjct: 1 MNFAAMDFET--ANAKRASACSLALVIVRNNQVTHE-FYSLINPET-DFSWRNINVHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + P+F + N +AHNA FD + L+R + + Sbjct: 57 KQDVANAPTF-PELWDHIAPLFTANKLVVAHNASFDNSVLKRTLERYDLLLPHFLTLDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + + + LN++C I + H + ++ Q Sbjct: 116 KTSKQFYPQMVNHKLNTVCDELHIELEHHHNALDDSVACANI-----LLTQQQQFG 166 >gi|222622820|gb|EEE56952.1| hypothetical protein OsJ_06659 [Oryza sativa Japonica Group] Length = 348 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 +M + D+E TGLD DRI+EI + + D T + Sbjct: 166 QMPLVWIDLEMTGLDVAKDRILEIACI-ITDGKLTKQ 201 >gi|307706367|ref|ZP_07643179.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK321] gi|307618285|gb|EFN97440.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK321] Length = 816 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLVQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMAQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|146318210|ref|YP_001197922.1| Rad3-related DNA helicase [Streptococcus suis 05ZYH33] gi|146320404|ref|YP_001200115.1| Rad3-related DNA helicase [Streptococcus suis 98HAH33] gi|145689016|gb|ABP89522.1| Rad3-related DNA helicase [Streptococcus suis 05ZYH33] gi|145691210|gb|ABP91715.1| Rad3-related DNA helicase [Streptococcus suis 98HAH33] gi|292558009|gb|ADE31010.1| DnaQ exonuclease [Streptococcus suis GZ1] Length = 837 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+E TG + +II+IG V + + ++ + P L GITD Sbjct: 27 RYAVVDLEATGTGTD-AKIIQIGIVLVENGEII-DSYATDINP-YELLDDHIKNLTGITD 83 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 + L P F + S +D + A ++AHN KFD Sbjct: 84 QQLSQAPDFGQVASTIYDMIGD--AIFVAHNVKFDAN 118 >gi|15640327|ref|NP_229954.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153822831|ref|ZP_01975498.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33] gi|153827159|ref|ZP_01979826.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae MZO-2] gi|153831076|ref|ZP_01983743.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39] gi|227080513|ref|YP_002809064.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2] gi|229524741|ref|ZP_04414146.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis VL426] gi|9654711|gb|AAF93473.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126519649|gb|EAZ76872.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33] gi|148873443|gb|EDL71578.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39] gi|149738956|gb|EDM53274.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae MZO-2] gi|227008401|gb|ACP04613.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2] gi|227012158|gb|ACP08368.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395] gi|229338322|gb|EEO03339.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis VL426] Length = 223 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 74/171 (43%), Gaps = 7/171 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETT LD K ++ I A ++ + T++ F+V LC + ++++H I Sbjct: 44 YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLC-APQSLDSGSVRIHRIRH 102 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L D S + +F N + ++ ++D ++ ++ PL I + Sbjct: 103 QDLHDGLSEKEALLQLIEFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQ 160 Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + P++ DL+ + + + KH AL D+ + V++++ Sbjct: 161 IYHDKLEKHLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIAAALVFVRLT 211 >gi|121591065|ref|ZP_01678378.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae 2740-80] gi|121729644|ref|ZP_01682121.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52] gi|147675462|ref|YP_001218570.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395] gi|153803140|ref|ZP_01957726.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae MZO-3] gi|153819596|ref|ZP_01972263.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC 8457] gi|229506903|ref|ZP_04396411.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286] gi|229509276|ref|ZP_04398759.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33] gi|229512692|ref|ZP_04402160.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21] gi|229516220|ref|ZP_04405668.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9] gi|229520981|ref|ZP_04410402.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80] gi|229527205|ref|ZP_04416598.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)] gi|229606416|ref|YP_002877064.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236] gi|254851434|ref|ZP_05240784.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10] gi|255744098|ref|ZP_05418052.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101] gi|262161990|ref|ZP_06031007.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1] gi|262167979|ref|ZP_06035678.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27] gi|262192561|ref|ZP_06050711.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93] gi|298500931|ref|ZP_07010733.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757] gi|121547098|gb|EAX57233.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae 2740-80] gi|121628578|gb|EAX61057.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52] gi|124121331|gb|EAY40074.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae MZO-3] gi|126509852|gb|EAZ72446.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC 8457] gi|146317345|gb|ABQ21884.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395] gi|229335213|gb|EEO00697.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)] gi|229341866|gb|EEO06867.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80] gi|229346646|gb|EEO11616.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9] gi|229350202|gb|EEO15154.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21] gi|229353591|gb|EEO18528.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33] gi|229356008|gb|EEO20927.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286] gi|229369071|gb|ACQ59494.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236] gi|254847139|gb|EET25553.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10] gi|255738363|gb|EET93754.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101] gi|262023512|gb|EEY42214.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27] gi|262028368|gb|EEY47024.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1] gi|262031606|gb|EEY50194.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93] gi|297540435|gb|EFH76494.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757] gi|327483170|gb|AEA77577.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4] Length = 209 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 74/171 (43%), Gaps = 7/171 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETT LD K ++ I A ++ + T++ F+V LC + ++++H I Sbjct: 30 YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLC-APQSLDSGSVRIHRIRH 88 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L D S + +F N + ++ ++D ++ ++ PL I + Sbjct: 89 QDLHDGLSEKEALLQLIEFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQ 146 Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + P++ DL+ + + + KH AL D+ + V++++ Sbjct: 147 IYHDKLEKHLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIAAALVFVRLT 197 >gi|15900695|ref|NP_345299.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae TIGR4] gi|111658147|ref|ZP_01408844.1| hypothetical protein SpneT_02000672 [Streptococcus pneumoniae TIGR4] gi|149021672|ref|ZP_01835703.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72] gi|14972279|gb|AAK74939.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Streptococcus pneumoniae TIGR4] gi|147930133|gb|EDK81119.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72] Length = 816 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLRKKMTQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|153811608|ref|ZP_01964276.1| hypothetical protein RUMOBE_02000 [Ruminococcus obeum ATCC 29174] gi|149832349|gb|EDM87434.1| hypothetical protein RUMOBE_02000 [Ruminococcus obeum ATCC 29174] Length = 319 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 10/178 (5%) Query: 7 MRKIVFDIE---TTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M IVFD+E + G ++ IIEIGAV++ + + FQ + P + Sbjct: 1 MNYIVFDLEWNQSPGGKKYSNSRLPFEIIEIGAVKMNEQREVVDVFQRLVKPQVYNWIHD 60 Query: 59 ALKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD 116 ++ + + L D F EF + E+ N ++ ++ Sbjct: 61 SIHEVIHVDYKDLADGEPFQQAVREFLKWCGEEYVFCTWGNQDVMELQRNMKYYGMLSLL 120 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P + + + H AL D+ D++ + Sbjct: 121 PGPVTYYDVQKIYGICHEEAGGRRSLEFAIDQMGIPKAQDFHRALTDARYTGDIFKTL 178 >gi|86145828|ref|ZP_01064156.1| DNA polymerase III, epsilon chain [Vibrio sp. MED222] gi|85836283|gb|EAQ54413.1| DNA polymerase III, epsilon chain [Vibrio sp. MED222] Length = 238 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 21/32 (65%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 IV D+ETTGLDS+ D I+ +G V+++ Sbjct: 51 YIVLDLETTGLDSEQDLILSMGWVDVVKGRID 82 >gi|313668201|ref|YP_004048485.1| DNA polymerase III subunit [Neisseria lactamica ST-640] gi|313005663|emb|CBN87106.1| putative DNA polymerase III subunit [Neisseria lactamica 020-06] Length = 470 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 64/173 (36%), Gaps = 8/173 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + D + E+ V+ ++ + P + +L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDMVTEVALVKFEQGRA--ERYEWLVNPQ-KPIPKFVAELTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + +AHN++FD F+ + S + + Sbjct: 85 DGMVADAPVFAEIAGELFSVLKG--CVLVAHNSRFDYTFLK--HEFHRAGIGFSSPALCS 140 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++R +P + I +H A+ D L D + Sbjct: 141 VQLSRCLYPQFYKHSLDSI-IERLGIVVEDRHRAMADVSALCDYLEYSLSEHG 192 >gi|55820864|ref|YP_139306.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311] gi|55736849|gb|AAV60491.1| ATP-dependent DNA helicase, truncated [Streptococcus thermophilus LMG 18311] Length = 557 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 76/181 (41%), Gaps = 8/181 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K+ + + D+E T S II++G V + + + F + P+ +K + Sbjct: 12 MSEKSTNKYAIVDLEATSASS-TACIIQVGIVIMQNGRVIDE-FASDVNPH-QKLDNHIV 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I ++ + ++AHN KFD + + Sbjct: 69 HLTGITDQQLSQAPDFSEIARTIFELIED--CIFVAHNVKFDANLLA--EALFMEGFELR 124 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +DT+ +A+ +P+ S R + + H A+ D+ + + +M + Sbjct: 125 TPRVDTVELAQVFYPTLEQYNLSYLSRV-LNLDLAQAHTAIEDARATGKLLLHLMDKIAS 183 Query: 181 I 181 + Sbjct: 184 L 184 >gi|319757677|gb|ADV69619.1| Rad3-related DNA helicase [Streptococcus suis JS14] Length = 837 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+E TG + +II+IG V + + ++ + P L GITD Sbjct: 27 RYAVVDLEATGTGTD-AKIIQIGIVLVENGEII-DSYATDINP-YELLDDHIKNLTGITD 83 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 + L P F + S +D + A ++AHN KFD Sbjct: 84 QQLSQAPDFGQVASTIYDMIGD--AIFVAHNVKFDAN 118 >gi|332520671|ref|ZP_08397133.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4] gi|332044024|gb|EGI80219.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4] Length = 444 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 8/187 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D+ET+G + +RI EI + + + F + PN L GI Sbjct: 1 MFYTIIDVETSG---RTNRITEISIFKYHENKIIDE-FTSLVNPNC-YIPEHITALTGID 55 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + P FS I ++ + ++ ++AHN FD I E +R+ D Sbjct: 56 NNTVANAPEFSEIANKVLE--ITKDCIFVAHNVNFDYNVIRKEFKRLEIDFTRKKLCTVR 113 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS L LCK I I+ R + ++ ++ ++ +I F Sbjct: 114 LSRKLLPG-HRSYSLGKLCKDLNICINGRHRARGDAEATVILFKKLQAQENAKEIFLKFL 172 Query: 187 TNEDRFF 193 + Sbjct: 173 NKNSKQA 179 >gi|312863243|ref|ZP_07723481.1| putative ATP-dependent DNA helicase DinG [Streptococcus vestibularis F0396] gi|311100779|gb|EFQ58984.1| putative ATP-dependent DNA helicase DinG [Streptococcus vestibularis F0396] Length = 839 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 12/224 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M KN + + D+E T S II++G V + + + F + P+ ++ + Sbjct: 12 MSEKNTNKYAIVDLEATSASS-TACIIQVGIVIMQNGLVIDE-FASDVNPH-QELDDHIV 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I ++ + ++AHN KFD + + Sbjct: 69 HLTGITDQQLSQAPDFSEIARTIFELIED--CIFVAHNVKFDANLLA--EALFMEGFELR 124 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG-- 178 + +DT+ +A+ +P+ S + + + H A+ D+ + +M Sbjct: 125 TPRVDTVELAQVFYPTLEQYKLSYLSQV-LNLDLAQAHTAIEDARATGQLLFHLMDKIAS 183 Query: 179 --SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 Q T D E + + + K + + EE Sbjct: 184 LPRQTIDMLLTFSDNLLFESELVIRDAIKGKTNSLSKKYVMLEE 227 >gi|87124219|ref|ZP_01080068.1| Exonuclease [Synechococcus sp. RS9917] gi|86167791|gb|EAQ69049.1| Exonuclease [Synechococcus sp. RS9917] Length = 261 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 58/217 (26%), Gaps = 10/217 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHGITDE 68 + D ET+GLD + D+ +E+GA+ Q FL P + Sbjct: 35 ILDTETSGLDPEQDQCLEVGAILFD--VPEREVLVQQSFLLPVEHN----PAQAINHIAA 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P + + +AH+A FD + + + Sbjct: 89 SATRCPQPWREGLRYLQALMDTADLLVAHHAAFDRQWFGRGHLPAARAAWLCTMDDIRWP 148 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL--SDVYIKMMVGGSQINFGFK 186 + P +L + HR+ + + + D ++ G + + Sbjct: 149 AELQLRPRPSVRDLALAHGIPVWAVHRALADCVYIAEVFKRRDDLEVLIRLGLEPRLLMR 208 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + + R++ E Sbjct: 209 AQVSFEQRHLAREAGFRWNDPVAGAWTRRLSAREAQA 245 >gi|116618623|ref|YP_818994.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097470|gb|ABJ62621.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 177 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 5/165 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + + + I + D ++ F + P S +HG+ Sbjct: 1 MNFVAMDFET--ANREKHSAVSIALAIVRDNQVVDK-FYSLIKPET-TFSSYNTAIHGLH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P F + F +N +AHNA FD + LQ + D + Sbjct: 57 RQDVADAPKF-PEVWQTISPFFTENKLVVAHNASFDNSILKGTLQYYDIDEPHYLLLDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + + LN++ GIT+ H + +Y Sbjct: 116 QTSRKLFPNFENHKLNTVAGNLGITLDHHHNALDDAVAAANILIY 160 >gi|322516980|ref|ZP_08069870.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus vestibularis ATCC 49124] gi|322124463|gb|EFX95958.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus vestibularis ATCC 49124] Length = 828 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 75/181 (41%), Gaps = 8/181 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M KN + + D+E T S II++G V + + + F + P+ ++ + Sbjct: 1 MSEKNTNKYAIVDLEATSASS-TACIIQVGIVIMQNGLVIDE-FASDVNPH-QELDDHIV 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I ++ + ++AHN KFD + + Sbjct: 58 HLTGITDQQLSQAPDFSEIARTIFELIED--CIFVAHNVKFDANLLA--EALFMEGFELR 113 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +DT+ +A+ +P+ S + + + H A+ D+ + +M + Sbjct: 114 TPRVDTVELAQVFYPTLEQYKLSYLSQV-LNLDLAQAHTAIEDARATGQLLFHLMDKIAS 172 Query: 181 I 181 + Sbjct: 173 L 173 >gi|91202954|emb|CAJ72593.1| strongly similar DNA polymerase epsilon subunit (3'-5' exonuclease) [Candidatus Kuenenia stuttgartiensis] Length = 204 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 71/207 (34%), Gaps = 11/207 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ET ++K + +G + + + RT + P P + +HGI+ Sbjct: 1 MKCVAIDFET--ANAKRSSVCSLGLAIIEEQTIVKRT-SWLIRPPELYFDPFSTYIHGIS 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++DKP F ++ E + F +AHNA FD+ + L + Sbjct: 58 AKDVEDKPEFYQLWDEIFPFLEGSY--LVAHNASFDMSVLCCILDVYKIPYPPLNYFCTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 R +L K H A D+ + + ++ +++ Sbjct: 116 AIAKRV---WPGLLGYALNKISRYLEIEFKHHDAEEDAVACAKI---LLHAYNELGVNNL 169 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLF 213 + K +K + + P Sbjct: 170 EELAKKIKLPEKYLLPDNFTPTLNPQV 196 >gi|304312854|ref|YP_003812452.1| Ribonuclease T [gamma proteobacterium HdN1] gi|301798587|emb|CBL46817.1| Ribonuclease T [gamma proteobacterium HdN1] Length = 223 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 63/186 (33%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTN-RTFQVFLCP----NGRKNSPEALK 61 +V D+ET G +S+ D ++EI A+ L + RT + P N K S E Sbjct: 19 VVIDVETGGFNSQTDALLEIAAISLHFDENGWLKKYRTSHFHVSPFAGANIEKASLEFTG 78 Query: 62 LHGITDEFLKDKPS-----FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + + + A + HNA FD F+ A QR Sbjct: 79 IDPWHPFRNAVDEKVALTEIFGEVRKALSNLECKRAILVGHNAFFDHQFLFAATQRAAIK 138 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C GI+ + + H AL D+ +D++ ++ Sbjct: 139 RNPFHPFSCFDTATLGGVALGQTVLARACIAAGISFNQKEAHSALYDADKTADLFCHIVN 198 Query: 177 GGSQIN 182 + Sbjct: 199 RWRALG 204 >gi|311739312|ref|ZP_07713148.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311305610|gb|EFQ81677.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 65 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 16/25 (64%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVE 33 V D ETTG + + DRIIE+ AV Sbjct: 31 FAVIDTETTGFNKRYDRIIELTAVR 55 >gi|21220034|ref|NP_625813.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)] gi|256788866|ref|ZP_05527297.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|289772754|ref|ZP_06532132.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|6822230|emb|CAB70936.1| putative DNA polymerase III [Streptomyces coelicolor A3(2)] gi|289702953|gb|EFD70382.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] Length = 241 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D++ DRI+ V R + + P G A +HG+T+E++ Sbjct: 11 AFDTETTGVDTETDRIVSAALVVQDAPGLRPRVTRWLVNP-GVPVPESATAVHGLTEEYV 69 Query: 71 KDKPSFSSIFSEFWD 85 + + + Sbjct: 70 QRHGRWPAPVMYEMA 84 >gi|120597914|ref|YP_962488.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. W3-18-1] gi|120558007|gb|ABM23934.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. W3-18-1] Length = 301 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 81/238 (34%), Gaps = 17/238 (7%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSK-TNRTFQVFLCPNGRKNSP 57 + M ++ D ETTGL + ++ IIE+G V++L ++ P G+ Sbjct: 49 ERPM--VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDP-GKPIPE 105 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 +L GITD+ ++ + S+ + + + +AHNA+FD F + Sbjct: 106 LITELTGITDDMVQGQHIDDSLVASW----LSDDPLVVAHNAQFDRPFFEKRFAALGHLS 161 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S + L L Y + HLL + ++ Sbjct: 162 WACSASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCFAMAWLFHLLPESVANLLSE 221 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231 + + F ++ +K + I+++EL + + L Sbjct: 222 ADRRTVLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279 >gi|225870177|ref|YP_002746124.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047] gi|225699581|emb|CAW93205.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047] Length = 823 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 8/181 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI + + V D+E T II++G V +++ + ++Q + P+ S Sbjct: 1 MINEFSQKYAVIDLEATSPGP-TASIIQVGIV-IVEGKEIVDSYQTDINPH-EPLSDHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS + ++ + ++AHN FD + L D L Sbjct: 58 ALTGITDQQLAQAPDFSQVARTIFELIED--CVFVAHNVTFDANLLAEALFLEGYDLL-- 113 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +DT+ +A+ +PS S + ++ H A+ D+ ++++IK++ Sbjct: 114 TPRVDTVELAQIFYPSLEKYSLSHLSEV-LDLNLSDAHTAIADAQATANLFIKLLHKIES 172 Query: 181 I 181 + Sbjct: 173 L 173 >gi|163789521|ref|ZP_02183959.1| exonuclease [Carnobacterium sp. AT7] gi|159875053|gb|EDP69119.1| exonuclease [Carnobacterium sp. AT7] Length = 177 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 5/167 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET ++ + + + + P +++HGIT Sbjct: 1 MNFVALDFET--ASNQRHSACSVALTVVRKSKIV-DHYYSLIKPETEFF-WRNVQVHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +KD PSF E F +N +AHN FD G + L + + Sbjct: 57 ENDVKDAPSF-PEVWEQIKPFFTENKLIVAHNLPFDRGVLQGCLDYYDLPQPHFQTLCTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 S + + LN++C I++ + ++ +Y++ Sbjct: 116 QSSRKLITEIPNHKLNTVCDHLNISLKNHHNALEDSNACAAILLYLE 162 >gi|15894025|ref|NP_347374.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum ATCC 824] gi|15023620|gb|AAK78714.1|AE007589_2 DNA polymerase III epsilon subunit (3'-5' exonuclease) containing BRCT domain [Clostridium acetobutylicum ATCC 824] Length = 306 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 5/150 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ D ET + K + IG V + D ++ + P + P + +HGI Sbjct: 1 MKFTAIDFET--ANEKRNSPCSIGIVVVKDGHVVEKS-HHLIRPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ +P F ++ + +F++ IAHNA FD+ + + N + + + I Sbjct: 58 PAMVEKEPEFDKVWEKIKHYFDD--TLVIAHNASFDISVLRKSAELYNIELPEFNYICTM 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156 LN++ G H Sbjct: 116 KLARNFYKGIENAKLNTVNNFLGYEFRHHD 145 >gi|330877336|gb|EGH11485.1| ribonuclease T [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966675|gb|EGH66935.1| ribonuclease T [Pseudomonas syringae pv. actinidiae str. M302091] Length = 225 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP------NGRKNSPEA 59 +V D+ET G +S D ++EI AV + + T+ + P Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFAGANIEAAALEFTG 92 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116 +KL + ++ + + IF + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI R H A D+ ++++ ++ Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212 Query: 177 GGSQIN 182 ++ Sbjct: 213 RWKEMG 218 >gi|323492075|ref|ZP_08097237.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546] gi|323313636|gb|EGA66738.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546] Length = 210 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 72/171 (42%), Gaps = 7/171 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETT LD ++ I A +++ + T++ F+V L + ++K+H I Sbjct: 30 YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLR-APQSLDSGSVKIHKIRH 88 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L D + +F N + ++ ++D ++ Q+ PL I + Sbjct: 89 QDLVDGIDEKQALIQLLEFI--GNRPLVGYHIRYDKKILDLACQKQLGFPLPNPLIEVSQ 146 Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + P++ DL+ + + + KH AL D+ + V++++ Sbjct: 147 IYHDKLEKHLPNAYFDLSLDAICRHLDLPMQDKHDALQDAISAALVFVRLT 197 >gi|300778928|ref|ZP_07088786.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910] gi|300504438|gb|EFK35578.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910] Length = 1555 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 63/201 (31%), Gaps = 18/201 (8%) Query: 9 KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL +D R+++I D + P G Sbjct: 2 YLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDDDGNLIENQDYIIKPEGYDIPFN 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-----FINAELQRI 113 A ++HGIT + ++ E + E+ HN +FD F L+ Sbjct: 62 AARIHGITTKIANEEGRDLQEILEEFSKVLEKVRVVSGHNVEFDYNIVGAEFYRKNLKDN 121 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL---DSHLLSDV 170 ++ +I + + + A D + + Sbjct: 122 LQEKPKADTMILGADFCQLGGGRGGRFKPPKLEELYEKLYGSKFDEAHNAAADVNATARA 181 Query: 171 YIKMMVGGSQINFGFKTNEDR 191 + +M+ G K +ED+ Sbjct: 182 FFEMVRIGVVPAETLKISEDQ 202 >gi|213970865|ref|ZP_03398988.1| ribonuclease T [Pseudomonas syringae pv. tomato T1] gi|213924388|gb|EEB57960.1| ribonuclease T [Pseudomonas syringae pv. tomato T1] Length = 203 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP------NGRKNSPEA 59 +V D+ET G +S D ++EI AV + + T+ + P Sbjct: 11 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFTG 70 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116 +KL + ++ + + IF + HNA FD+GF+NA + R++ Sbjct: 71 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 130 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI R H A D+ ++++ ++ Sbjct: 131 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 190 Query: 177 GGSQIN 182 ++ Sbjct: 191 RWKEMG 196 >gi|160893764|ref|ZP_02074548.1| hypothetical protein CLOL250_01318 [Clostridium sp. L2-50] gi|156864749|gb|EDO58180.1| hypothetical protein CLOL250_01318 [Clostridium sp. L2-50] Length = 216 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 8/88 (9%) Query: 7 MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M I D E +D+ + IIEIGAV+L D K +F+ ++ P + Sbjct: 1 MEYIFVDFEMNQIDNSHPDELKICKNEIIEIGAVKLDDTYKEIDSFKTYVKPGITPVTSR 60 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDF 86 L GIT+E + D P F+ F + Sbjct: 61 ITNLTGITNEMVDDAPDFAIAMDRFIAW 88 >gi|15902755|ref|NP_358305.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae R6] gi|116516668|ref|YP_816199.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae D39] gi|15458302|gb|AAK99515.1| ATP-dependent DNA helicase [Streptococcus pneumoniae R6] gi|116077244|gb|ABJ54964.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae D39] Length = 816 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMAQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|28871300|ref|NP_793919.1| ribonuclease T [Pseudomonas syringae pv. tomato str. DC3000] gi|301384500|ref|ZP_07232918.1| ribonuclease T [Pseudomonas syringae pv. tomato Max13] gi|302130507|ref|ZP_07256497.1| ribonuclease T [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999382|sp|Q87XM0|RNT_PSESM RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|28854550|gb|AAO57614.1| ribonuclease T [Pseudomonas syringae pv. tomato str. DC3000] gi|331015669|gb|EGH95725.1| ribonuclease T [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 225 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP------NGRKNSPEA 59 +V D+ET G +S D ++EI AV + + T+ + P Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFTG 92 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116 +KL + ++ + + IF + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI R H A D+ ++++ ++ Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212 Query: 177 GGSQIN 182 ++ Sbjct: 213 RWKEMG 218 >gi|114321417|ref|YP_743100.1| ribonuclease T [Alkalilimnicola ehrlichii MLHE-1] gi|114227811|gb|ABI57610.1| RNAse T [Alkalilimnicola ehrlichii MLHE-1] Length = 216 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 13/184 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET GL++ D +++I AV L T + P G P+AL+L+G Sbjct: 25 VVVDVETGGLNAATDALLQIAAVVLRMDENGRLYPAATHTCHVKPFEGANIDPKALELNG 84 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A I HN+ FD+GF+NA +QR Sbjct: 85 IDPDHPLRMALPEDEALKKVFRPIRQEVRQTGCNRAVLIGHNSFFDLGFLNAAVQRCGIK 144 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L G ++ H A+ D+ +D++ ++ Sbjct: 145 RNPFHPFTSFDTATLAGLAYGQTVLAKALVASGEEWDGKAAHSAIYDAEKTADLFCGIVN 204 Query: 177 GGSQ 180 + Sbjct: 205 RWDE 208 >gi|313768210|ref|YP_004061890.1| hypothetical protein MpV1_007c [Micromonas sp. RCC1109 virus MpV1] gi|312598906|gb|ADQ90930.1| hypothetical protein MpV1_007c [Micromonas sp. RCC1109 virus MpV1] Length = 443 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 89/263 (33%), Gaps = 29/263 (11%) Query: 7 MRKIVFDIETTGLD-------------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53 M+ I FD ET+GL + R + + A + TF + PN Sbjct: 4 MQYIAFDFETSGLPEGRRPVTPETLHQFDSCRAVSLSAARFSSRGRLVDTFDAIVYPNDF 63 Query: 54 KNSPEALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + S ++ +HGIT + ++ F+ +F +F F + +AHNAKFD + +E+ R Sbjct: 64 QISQGSIDVHGITQQRAEREGRPFTEVFLDFVRFIGPRTTTMVAHNAKFDTSVLRSEMIR 123 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 D + ++ + + + + H +L D VY Sbjct: 124 HRLDLHLIENLNFRCTMELYRERFLKPIKLGVLYEQIFGQPFENAHNSLADCIACGRVYP 183 Query: 173 KMMVGGSQINF---------GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR-ITKEELD 222 ++ + +K+ L K+ P TK+E Sbjct: 184 YIIGHERTLKPIGVPKVIIGASSVASAIGIGFKKQPELVEELWKKYSPKTFEGQTKDEKA 243 Query: 223 EHDKTIQTLGKNAIWDRYISSNQ 245 +Q L ++ + + Sbjct: 244 -----LQILNSKPNLEKILKDAE 261 >gi|282848807|ref|ZP_06258200.1| exonuclease [Veillonella parvula ATCC 17745] gi|282581461|gb|EFB86851.1| exonuclease [Veillonella parvula ATCC 17745] Length = 327 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 25/205 (12%) Query: 7 MRKIVFDIE--------------T----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 M IVFD+E T TG II+IGAV+L + F +F+ Sbjct: 1 MNYIVFDLEWNQPYSNDISFMKRTKMPLTG------EIIQIGAVKLNEKMDIIDHFTMFI 54 Query: 49 CPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 P + +L GIT L F + F + ++ + + N Sbjct: 55 KPQYLPRMHKHVRELTGITTHELNHGVPFKTAMQYFQKWCGDEYMLLSWGSDDILILREN 114 Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 L ++ D + +R S + + + I+ H S H AL D+ Sbjct: 115 LMLHKMKALSYDQWVDAQMIYSYQRYGTSQQYSVAHAMEDLNISTEHLSAHNALHDAVFT 174 Query: 168 SDVYIKMMVGGSQINFGFKTNEDRF 192 + + + + +++ E Sbjct: 175 AHICQTLDIAQGILHYDLIRKESSN 199 >gi|218709246|ref|YP_002416867.1| putative exonuclease [Vibrio splendidus LGP32] gi|218322265|emb|CAV18390.1| putative exonuclease [Vibrio splendidus LGP32] Length = 238 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 21/32 (65%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 IV D+ETTGLDS+ D I+ +G V+++ Sbjct: 51 YIVLDLETTGLDSEQDLILSMGWVDVVKGRID 82 >gi|317485586|ref|ZP_07944462.1| exonuclease [Bilophila wadsworthia 3_1_6] gi|316923123|gb|EFV44333.1| exonuclease [Bilophila wadsworthia 3_1_6] Length = 169 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 64/171 (37%), Gaps = 10/171 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET D + D +G ++ T + P R+ +HGIT + Sbjct: 6 YVALDFET--ADYQPDSACAVGLAKVRGGEVV-DTLYSLIRPPRRRV--LFTWVHGITWK 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+F + + F +AHNA FD + A Q L + TL Sbjct: 61 DVQGSPTFLEFWPQMASFLQGVTH-LVAHNAPFDRRVLEACCQSNGIA-LPDLPFVCTLR 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +RRK + L+++C+ G H A D+ + + I + Sbjct: 119 ESRRKLKLPSHKLDAVCRCCG---IPLDHHHAGSDAIAAARILIYLQGESQ 166 >gi|257068061|ref|YP_003154316.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Brachybacterium faecium DSM 4810] gi|256558879|gb|ACU84726.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Brachybacterium faecium DSM 4810] Length = 238 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 1/53 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLH 63 FD ETTG + DRI+ + V + + T + P P Sbjct: 16 FDTETTGTNVARDRIVTVALVHSVGPGREGETVATWLIDPEMEIPEPAQRVHG 68 >gi|94502355|ref|ZP_01308822.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451087|gb|EAT14045.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 511 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 69/187 (36%), Gaps = 17/187 (9%) Query: 9 KIVFDIETTGLDSKND------------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 I+FD ETTGL D R++++ V L + + + P G + Sbjct: 2 YIIFDTETTGLPLPKDFNPPIINIINLPRLVKLSWVLLDEKLQLIELKDYIIKPEGYEIP 61 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + K+HGI+ ++ +K + E ++ +++ I HN FD+ + AE RINK Sbjct: 62 FNSTKIHGISTKYAIEKGIKINFVLEEFNLIIKKSNFLIGHNVFFDIKIVCAEFIRINKK 121 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVY 171 + I + + + + H + D + + Sbjct: 122 ISFFKKKIIDTKEISINYCAIKMGEKFKWPTLTELYKKLFNDTFIAHDSKSDVLATTKCF 181 Query: 172 IKMMVGG 178 +++ G Sbjct: 182 FELLRIG 188 >gi|289167702|ref|YP_003445971.1| ATP-dependent helicase DinG [Streptococcus mitis B6] gi|288907269|emb|CBJ22104.1| ATP-dependent helicase DinG [Streptococcus mitis B6] Length = 816 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIV-DHYTSDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + +D + ++AHN +FD + + + Sbjct: 58 LTGLTDKRLAQAPDFSQVARKIFDLVKD--GIFVAHNVQFDANLLAEN--LFFEGYELRN 113 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + +Q Sbjct: 114 PRVDTVELAQVFFPELEKYSLPILCRELGIPLKHA--HTALSDAQATAELLLFLREKMAQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|254429651|ref|ZP_05043358.1| exonuclease superfamily [Alcanivorax sp. DG881] gi|196195820|gb|EDX90779.1| exonuclease superfamily [Alcanivorax sp. DG881] Length = 215 Score = 49.2 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 17/30 (56%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK 39 + D ETTGLDS+ ++ I AV + D Sbjct: 46 VAIDCETTGLDSRTAELVSIAAVVIKDGRV 75 >gi|84386996|ref|ZP_00990019.1| DNA polymerase III, epsilon chain [Vibrio splendidus 12B01] gi|84378071|gb|EAP94931.1| DNA polymerase III, epsilon chain [Vibrio splendidus 12B01] Length = 238 Score = 49.2 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 59/167 (35%), Gaps = 2/167 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITD 67 IV D+ETTGLDS+ D I+ +G V+++ + ++L + + N+ A+ H Sbjct: 51 YIVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAKHIYLDNDSQINAETAVINHITPQ 110 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++ + F + + + + PL + Sbjct: 111 MLEEGASIHDAMLTFFEAAKGKIIVAHACMVEERFISQYLLRCYGLRAIPLLWLDTLCIE 170 Query: 128 SIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDSHLLSDVYIK 173 + + +L + H AL D+ +++++ Sbjct: 171 KSMEKAISNHEEVDLTLAGTRERYGLPEYNNHNALADAVSTAELFLA 217 >gi|330832545|ref|YP_004401370.1| Rad3-related DNA helicase [Streptococcus suis ST3] gi|329306768|gb|AEB81184.1| Rad3-related DNA helicase [Streptococcus suis ST3] Length = 837 Score = 49.2 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+E TG + +II+IG V + + ++ + P L GITD Sbjct: 27 RYAVVDLEATGTGTD-AKIIQIGIVLVENGEII-DSYATDINP-YELLDDHIKNLTGITD 83 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 + L P F + S +D + A ++AHN KFD Sbjct: 84 QQLSQAPDFGQVASTIYDMIGD--AIFVAHNVKFDAN 118 >gi|77543206|gb|ABA87018.1| hypothetical protein [Vibrio cholerae] gi|259156499|gb|ACV96443.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Mex1] Length = 301 Score = 49.2 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 81/238 (34%), Gaps = 17/238 (7%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSK-TNRTFQVFLCPNGRKNSP 57 + M ++ D ETTGL + ++ IIE+G V++L ++ P G+ Sbjct: 49 EQPM--VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDP-GKPIPE 105 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 +L GITD+ ++ + S+ + + + +AHNA+FD F + Sbjct: 106 LITELTGITDDMVRGQRIDDSLVASW----LSDDPLVVAHNAQFDRPFFEKRFAALGHLS 161 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S + L L Y + HLL + ++ Sbjct: 162 WACSASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSE 221 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231 + + F ++ +K + I+++EL + + L Sbjct: 222 ADRRTVLVRAFGAPFEVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279 >gi|322650293|gb|EFY46707.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 205 Score = 49.2 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 10 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 69 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A +AHNA FD F+ A R + Sbjct: 70 IDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAGRASLK 129 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C G+ H AL D+ + ++ +++ Sbjct: 130 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVN 189 Query: 177 GGSQIN 182 ++ Sbjct: 190 RWKRLG 195 >gi|322615086|gb|EFY12009.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619925|gb|EFY16798.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622237|gb|EFY19082.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627759|gb|EFY24549.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632896|gb|EFY29640.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636613|gb|EFY33316.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641194|gb|EFY37836.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644871|gb|EFY41404.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322655865|gb|EFY52167.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660193|gb|EFY56432.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665242|gb|EFY61430.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669499|gb|EFY65647.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673425|gb|EFY69527.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677353|gb|EFY73417.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679984|gb|EFY76023.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687456|gb|EFY83428.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194090|gb|EFZ79289.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198572|gb|EFZ83673.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202899|gb|EFZ87934.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208618|gb|EFZ93556.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211154|gb|EFZ96001.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217595|gb|EGA02310.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218944|gb|EGA03454.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227078|gb|EGA11258.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229397|gb|EGA13520.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236896|gb|EGA20968.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240342|gb|EGA24386.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242669|gb|EGA26690.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250235|gb|EGA34126.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252445|gb|EGA36292.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256463|gb|EGA40196.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261433|gb|EGA45016.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267209|gb|EGA50694.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272728|gb|EGA56133.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 215 Score = 49.2 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A +AHNA FD F+ A R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAGRASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + A + L+ C G+ H AL D+ + ++ +++ Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVN 199 Query: 177 GGSQIN 182 ++ Sbjct: 200 RWKRLG 205 >gi|195977857|ref|YP_002123101.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974562|gb|ACG62088.1| probable ATP-dependent helicase DinG [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 821 Score = 49.2 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 8/181 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI + + V D+E T II++G V +++ + ++Q + P+ S Sbjct: 1 MINEFSQKYAVIDLEATSPGP-TASIIQVGIV-IIEGKEIVDSYQTDVNPH-EPLSDHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS + ++ + ++AHN FD + L D L Sbjct: 58 ALTGITDQQLAQAPDFSQVARTIFELIED--CVFVAHNVTFDANLLAEALFLEGYDLL-- 113 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +DT+ +A+ +PS S + ++ H A+ D+ ++++IK++ Sbjct: 114 TPRVDTVELAQIFYPSLEKYSLSHLSEV-LDLNLSDAHTAIADAQATANLFIKLLHKIES 172 Query: 181 I 181 + Sbjct: 173 L 173 >gi|313892759|ref|ZP_07826340.1| exonuclease [Veillonella sp. oral taxon 158 str. F0412] gi|313442690|gb|EFR61101.1| exonuclease [Veillonella sp. oral taxon 158 str. F0412] Length = 327 Score = 49.2 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 71/205 (34%), Gaps = 25/205 (12%) Query: 7 MRKIVFDIE--------------T----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 M IVFD+E T TG II+IGAV+L D F +F+ Sbjct: 1 MNYIVFDLEWNQPYSNDISFMKRTKMPLTG------EIIQIGAVKLNDEMDIVDHFTMFI 54 Query: 49 CPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 P + +L GIT L F + F ++ ++ + + N Sbjct: 55 KPQYLPRMHKHVRELTGITSRELDHGVPFKTAMQHFQNWCGDEYMLLSWGSDDILILREN 114 Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 L ++ D + +R + + + + I+ H S H AL D+ Sbjct: 115 LMLHKMKALSYDQWVDAQMIYAYQRYGTNQQYSVAHAMEDLNISTEHLSAHNALHDAVFT 174 Query: 168 SDVYIKMMVGGSQINFGFKTNEDRF 192 + + K+ + +++ E Sbjct: 175 ARICQKLDIPQGILHYDQIRKESSN 199 >gi|302561692|ref|ZP_07314034.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] gi|302479310|gb|EFL42403.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] Length = 241 Score = 49.2 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D +NDRI+ V R + + P G A ++HG+T+E L Sbjct: 11 AFDTETTGVDVENDRIVSAALVVQDASGARPRVTRWLVNP-GVPVPAAATEVHGLTEEHL 69 Query: 71 KDKPSFSSIFSEFWD 85 + + + Sbjct: 70 QRNGRWPAPVMYEMA 84 >gi|268680225|ref|YP_003304656.1| DNA polymerase III subunit epsilon [Sulfurospirillum deleyianum DSM 6946] gi|268618256|gb|ACZ12621.1| DNA polymerase III, epsilon subunit [Sulfurospirillum deleyianum DSM 6946] Length = 260 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 11/202 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + + DIE G D IIEIGAV + F ++L GIT Sbjct: 70 KFCIVDIEANGSKPALDAIIEIGAVMVEKGKIVGE-FSSLAK--TDVLPESIVQLTGITL 126 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L PS +S+ F F + A ++AHN FD FI+ L+ PL +R +DT+ Sbjct: 127 EELSFAPSLNSVLEGFRLFIKD--AVFVAHNVNFDYYFISHSLEMAGFGPL-LNRRLDTI 183 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR+ + + L++L + GIT + H AL D+ ++V ++ + + +T Sbjct: 184 DLARKCIEAPKYGLSALAEHLGITF--ENHHRALYDAKATTEV---LLHVFNNLPHEVQT 238 Query: 188 NEDRFFKEEKKTVPNISLLKRD 209 E + ++ Sbjct: 239 VEQLIAFSRPQNQRKKKKESKN 260 >gi|78184888|ref|YP_377323.1| exonuclease [Synechococcus sp. CC9902] gi|78169182|gb|ABB26279.1| DNA polymerase III, epsilon subunit [Synechococcus sp. CC9902] Length = 307 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 10/164 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL+ +N +E+GA+ L P Sbjct: 80 ILDTETTGLEPENHCCVEVGAILFDVQSRAVLAQQSFLLPAETNAAEP-----INRIPAA 134 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P ++ + +AHNA FD + ++ + Sbjct: 135 VTRLPQPWKQALLWFQNLLDAADVLVAHNAAFDRQWFGRGELPTVTQ--PWLCSMEDMRW 192 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + SR + L YG+ + H AL D L++V+ + Sbjct: 193 PADRQLRSRPSVRDLALAYGVPVWAA--HRALTDCIYLAEVFAR 234 >gi|291547443|emb|CBL20551.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Ruminococcus sp. SR1/5] Length = 318 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 62/194 (31%), Gaps = 22/194 (11%) Query: 7 MRKIVFDIETTGL---DSKNDR---------IIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 M IVFD+E + R IIEIGAV+L + + TFQ + P Sbjct: 1 MNYIVFDLE----WNQNPDGRRHPDSRLPFEIIEIGAVKLNEKREIVDTFQCLIKPKVYH 56 Query: 55 NSPEALKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-----AHNAKFDVGFINA 108 +++ + L+ F F ++ E+ + + ++ + N Sbjct: 57 WIHDSIHEVIHVDYHELEKGIPFPRAIRRFLEWCGEEYRFFTWGDQDVMELQRNMKYYNL 116 Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 + + ++ S + HR+ A + +L Sbjct: 117 LKLMPGPVHYYDVQKLFSIKFEDGISRRSLEYATDYLQLPKNRDFHRALADASYTARILL 176 Query: 169 DVYIKMMVGGSQIN 182 ++ M+ ++ Sbjct: 177 EIDEACMIRHPSLD 190 >gi|51244817|ref|YP_064701.1| DNA polymerase III subunit epsilon [Desulfotalea psychrophila LSv54] gi|50875854|emb|CAG35694.1| probable DNA polymerase III, epsilon chain [Desulfotalea psychrophila LSv54] Length = 239 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPN 51 + D ETTGLD + D I+ IG + + + + P+ Sbjct: 49 FVALDFETTGLDLQKDGILSIGLIPFDTHRIYCKKAAYWVINPH 92 >gi|152994734|ref|YP_001339569.1| exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1] gi|150835658|gb|ABR69634.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1] Length = 220 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 18/35 (51%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT 43 +V DIET+GLD K D I+ G V + T Sbjct: 28 YLVLDIETSGLDPKQDHIVSFGWVCIHKGVIELDT 62 >gi|153005992|ref|YP_001380317.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] gi|152029565|gb|ABS27333.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] Length = 213 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 6/170 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN--GRKNSPEALKLHGITD 67 D+ET GLD+K D ++ IG V + + ++ + P+ R S +++ Sbjct: 31 AIDVETGGLDAKRDPLLAIGMVPVRAGRIRLGECYRTLVRPHAGTRITSASVTAHQLVSN 90 Query: 68 EFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 +F P + + + I ++ Sbjct: 91 DFEAAPPLGDVLPEVERRAREGALLFHHAAIDVAFLRRDFARTGLTWPSCPVVDTARLLV 150 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + P LN R + + H AL D+ +++++ + Sbjct: 151 RHAQLRDPTRPRDHIALNLSVARAELGLPEYQAHDALSDAIATAELFLAL 200 >gi|221069684|ref|ZP_03545789.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1] gi|220714707|gb|EED70075.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1] Length = 213 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 5/115 (4%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ ++ R E+ V L +R FQ + G SP +L GIT+ Sbjct: 7 VIDFETTGMTPAQGARATEVAIVLLEQGRVVDR-FQSLMQ-AGAWVSPFITELTGITNAM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 L+ P + + + F AHNA FD F AEL + Sbjct: 65 LRTAPPAAEVMRDAARFVGGAPMV--AHNASFDSKFWQAELALAGEAAPQLFACT 117 >gi|89094457|ref|ZP_01167397.1| DNA polymerase III subunit epsilon [Oceanospirillum sp. MED92] gi|89081349|gb|EAR60581.1| DNA polymerase III subunit epsilon [Oceanospirillum sp. MED92] Length = 209 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Query: 9 KIV-FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPN 51 ++V D ETT LD K I+ IGAV++ ++ + L P Sbjct: 32 EVVSLDCETTSLDVKQGEIVSIGAVKIKGRKVLSSDRLDIKLKPP 76 >gi|261251373|ref|ZP_05943947.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891] gi|260938246|gb|EEX94234.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891] Length = 239 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGLDS ND II IG V + N+ + P ++ + E++ +HGIT Sbjct: 49 FLAMDFETTGLDSDNDDIITIGTVPFNLNRIFINQAQHWTVRP-RKQLAEESVVIHGITH 107 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEW 94 + D P S I+ + + + + Sbjct: 108 SDVLDAPDLSGIYEQVLEQMSGKIMVV 134 >gi|311113524|ref|YP_003984746.1| exonuclease [Rothia dentocariosa ATCC 17931] gi|310945018|gb|ADP41312.1| exonuclease [Rothia dentocariosa ATCC 17931] Length = 409 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 5/164 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET +I +++ + +R +L P E LHGI+ Sbjct: 242 YVAVDFETA-NSVSGASACQIALIKVQNGLVVDR-LVSYLKPPAELRRFEFTHLHGISAR 299 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P++ + F AHNA FD N + T Sbjct: 300 TVRVAPTWVEVLPAITAFIGS--FPVYAHNASFDSKVWQELDDYYNVHTVPTHFFC-TYR 356 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +A++ P N + H A D+ + + + Sbjct: 357 MAKKALPHLENHKLPTVIKACAPKFKLKHHKADSDAEACAYIVL 400 >gi|253572302|ref|ZP_04849705.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251838077|gb|EES66165.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 188 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 63/190 (33%), Gaps = 9/190 (4%) Query: 1 MIRK--NKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 M +K +M+ D ET + K + +G V + + + + + P + Sbjct: 1 MFQKTAKRMKDFAAIDFET--ANGKRTSVCSVGVVIVRNGKIVKKIY-RLIRPCPNYYTQ 57 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 +HG+T ++ F +++E + +AHN+ FD G + A + Sbjct: 58 WTTAVHGLTYADTEEAEDFPDVWAEIKPLIDG--LPLVAHNSPFDEGCLKAVHELYEMTY 115 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + + N + H AL D+ + + + ++ Sbjct: 116 PNYKFYCTCRTSRKVFGKELPNHQLHTVAAR-CGYDLTNHHHALADAEACAQIALLIIPE 174 Query: 178 GSQINFGFKT 187 + T Sbjct: 175 PKKPKVDLHT 184 >gi|172051553|emb|CAQ34948.1| hypothetical protein [Photobacterium damselae subsp. piscicida] Length = 302 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 78/232 (33%), Gaps = 15/232 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSK-TNRTFQVFLCPNGRKNSPEALKLH 63 ++ D ETTGL + ++ IIE+G V++L ++ P G+ +L Sbjct: 53 VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDP-GKPIPELITELT 111 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD+ ++ + + + + + +AHNA+FD F + S Sbjct: 112 GITDDMVQGQHIDDLLVASW----LSDDPLVVAHNAQFDRPFFEKRFAALGHLSWACSAS 167 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L L Y + HLL + ++ + Sbjct: 168 GIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSEADRRTV 227 Query: 184 GFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231 + F ++ +K + I+++EL + + L Sbjct: 228 LVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279 >gi|269968066|ref|ZP_06182103.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269827312|gb|EEZ81609.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 238 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IV D+ETTGLDS+ + I+ +G VE+ + + +++ + + + H Sbjct: 51 FIVLDLETTGLDSEEEVILSMGWVEIRQGHIDLATSQHLYVHSDSKIKPETIVVNHITQQ 110 Query: 68 E 68 Sbjct: 111 M 111 >gi|317126517|ref|YP_004100629.1| exonuclease RNase T and DNA polymerase III [Intrasporangium calvum DSM 43043] gi|315590605|gb|ADU49902.1| Exonuclease RNase T and DNA polymerase III [Intrasporangium calvum DSM 43043] Length = 228 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 18/33 (54%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 R + D+ETTGLD + D I+ +G V + Sbjct: 43 RLLAVDLETTGLDPRTDHILTVGFVPVDGLVID 75 >gi|254516595|ref|ZP_05128654.1| ribonuclease T [gamma proteobacterium NOR5-3] gi|219675018|gb|EED31385.1| ribonuclease T [gamma proteobacterium NOR5-3] Length = 209 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 66/195 (33%), Gaps = 16/195 (8%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLD--YSKTNRTFQVFLCP-NG 52 M K++ R ++ D+ET G S D I+E+ A + + D + + T + P G Sbjct: 1 MAMKSRFRGFLPVIIDMETGGFSSSTDAILELAATIIRMDDSGHVAVHETHSFNVAPFEG 60 Query: 53 RKNSPEALKLHGITDEFLKDKPS--------FSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 AL GI + + A + HNA FD G Sbjct: 61 ANIEQSALDFTGIDPWHPFREAHSEKDALAELFQVVRREIRDQECNRAILVGHNAHFDAG 120 Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 F+NA ++R + + L C GI + H A D+ Sbjct: 121 FLNAAVERCEIKRNPFHPFSHFDTATLSGLAYGQTVLAKSCLEAGIPFDNEQAHSAAYDA 180 Query: 165 HLLSDVYIKMMVGGS 179 ++++ ++ Sbjct: 181 ERTAELFCSIVNRWQ 195 >gi|25027941|ref|NP_737995.1| putative DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] gi|259506334|ref|ZP_05749236.1| DNA polymerase III, epsilon subunit [Corynebacterium efficiens YS-314] gi|23493224|dbj|BAC18195.1| putative DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] gi|259166114|gb|EEW50668.1| DNA polymerase III, epsilon subunit [Corynebacterium efficiens YS-314] Length = 227 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 14/29 (48%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK 39 D+ETTGL +I+ IG V + Sbjct: 47 AVDVETTGLKPDEHQIVSIGWVPVTGRVI 75 >gi|114562985|ref|YP_750498.1| DNA polymerase III subunit epsilon [Shewanella frigidimarina NCIMB 400] gi|114334278|gb|ABI71660.1| Exonuclease, RNase T and DNA polymerase III [Shewanella frigidimarina NCIMB 400] Length = 238 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + D ETTGLDS+ + II IG V L + + +L P + + Sbjct: 48 FVALDFETTGLDSQKNSIISIGLVPFTLQRIFCRKAKKWYLNPKDKLQEDSIIIHG 103 >gi|307327522|ref|ZP_07606708.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] gi|306886921|gb|EFN17921.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] Length = 274 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTGLD DRI++ V + + R + + P G EA K+HGIT + Sbjct: 15 FDTETTGLDVFKDRIVQAALVGQDRSGREVFRE-EWLINP-GILIPREATKIHGITSDRA 72 Query: 71 K 71 Sbjct: 73 M 73 >gi|302668948|ref|YP_003832773.1| exonuclease family protein [Butyrivibrio proteoclasticus B316] gi|302397288|gb|ADL36191.1| exonuclease family protein [Butyrivibrio proteoclasticus B316] Length = 302 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 73/194 (37%), Gaps = 12/194 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPE 58 ++R NK+ I++D ETTG K I++I A++L + T ++ P Sbjct: 25 VLRNNKVPIIIYDTETTGTG-KKAYIVQISALKLSPGNPYYIVDTLDQYIRPP-IPMPAA 82 Query: 59 ALKLHGITDEFLKDKP-------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 A ++ ITDEFL+DKP + F + D N + + A Sbjct: 83 ASAVNHITDEFLEDKPSEEIALSWIQNFFGDPNDSVIAGYNHISFDNKMMNNMYQRAAGL 142 Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK-HGALLDSHLLSDV 170 + + ++ + R + R L S+ + YGI + H A+ D + V Sbjct: 143 TFDPKWNVDALVMARCLVDRNEITDGRFTLASIAETYGIKTDEDQQLHNAMTDIQVTMKV 202 Query: 171 YIKMMVGGSQINFG 184 ++ Sbjct: 203 MWALINDYVDSGLE 216 >gi|305665063|ref|YP_003861350.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170] gi|88709815|gb|EAR02047.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170] Length = 461 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 8/170 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M IV DIETTG K ++I EI + Y + F + P + L GI Sbjct: 1 MYTIV-DIETTGNGIKGNKITEISIFKYDGYDIIDE-FTSLVNPEC-EIPYFITGLTGID 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ ++D P I + + ++ ++AH+ FD G I EL+ I D + + T Sbjct: 58 NDLVRDAPKLIEISHKILE--ITKDTIFVAHSVGFDYGVIKNELKTIGLD--FTRKKLCT 113 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + ++R+ P + + I +H A D+H + ++ K++ Sbjct: 114 VRLSRKLIPGYNSYSLGKI-CSALKIPLTDRHRARGDAHATTLLFQKLLR 162 >gi|322380763|ref|ZP_08054869.1| DNA polymerase III subunit epsilon [Helicobacter suis HS5] gi|321146767|gb|EFX41561.1| DNA polymerase III subunit epsilon [Helicobacter suis HS5] Length = 219 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 13/178 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPEALKL 62 DIETTG +N +IEI A+ + R+F + + + P+ +L Sbjct: 36 YCFVDIETTGSKPENSSMIEIAALLYEPPKNPMHKGQIIRSFSSLI--HCLEVPPKITEL 93 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 G++ + LK+ P ++ +F F + ++AHNA FD FI+A ++ L + Sbjct: 94 TGLSTDDLKEAPPLEAVLQDFKLFIQD--HIFVAHNADFDFHFISACCAQVLDSAL-SNA 150 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + TL++AR+ PS R+ L L G+ I H A D+ V+ + Q Sbjct: 151 KLCTLNLARKCIPSPRHGLQFLNTFLGLDIPIS--HRAYADALASLRVFEHCLRVLPQ 206 >gi|320332661|ref|YP_004169372.1| Exonuclease RNase T and DNA polymerase III [Deinococcus maricopensis DSM 21211] gi|319753950|gb|ADV65707.1| Exonuclease RNase T and DNA polymerase III [Deinococcus maricopensis DSM 21211] Length = 183 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 7/178 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--D 67 I D ET G+D ++ +G V L D T R + + + PEA++++GI Sbjct: 7 IFLDTETGGMDPAVHPLLTVGLVTLQDGEIT-RPLHLRVRHDTYTVDPEAMRVNGIDLLT 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF----INAELQRINKDPLDPSRI 123 + P + HN FD+GF + + +D Sbjct: 66 HHDEAHPPAEVAAAIRAYAAEVGRVMLGGHNFAFDLGFLRTLLPDRSRVFRCGHVDTKTT 125 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L A L+ L K +GI + ++ + ++K++ Sbjct: 126 AQFLIHAGILPKKVGTALDQLAKHFGIEYQAHDALEDARTTAIVYNEFLKLVRAAPTT 183 >gi|227502443|ref|ZP_03932492.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC 49725] gi|306835006|ref|ZP_07468054.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49726] gi|227076812|gb|EEI14775.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC 49725] gi|304569114|gb|EFM44631.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49726] Length = 479 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 3/105 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + ++TTG+ RI+ I AV + + F L P LHG+T Sbjct: 113 YVALTLQTTGIHPSTGRIVTIDAVAFDNAGDIGQRFHAVLKP---DIDAGPHHLHGLTVA 169 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 ++ P+FS I + + + A + Sbjct: 170 DIEQAPAFSRILKSLDKLIDGRTLVVHDIPYTWGFIVAEARRAMM 214 >gi|152970907|ref|YP_001336016.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895421|ref|YP_002920156.1| exodeoxyribonuclease X [Klebsiella pneumoniae NTUH-K2044] gi|150955756|gb|ABR77786.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238547738|dbj|BAH64089.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 219 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 62/162 (38%), Gaps = 17/162 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++D T + P+ R SP+A+ +H IT+E + Sbjct: 4 VIDTETCGL---QGGIVEIASVDIVDGQIT-NPMSHLVRPD-RPISPQAMAIHRITEEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I + + ++AHNA FD + + Sbjct: 59 ADKPWIEEIIPHYH-----GSPWYVAHNASFDRRVLPEMHGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S L K T H AL D ++ + + + Sbjct: 107 WPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYITAALLL 148 >gi|19069923|emb|CAC38117.2| polymerase epsilon subunit like protein [Providencia rettgeri] gi|19882268|gb|AAM01212.1| putative 3'-5'exonuclease [IncJ plasmid R391] gi|20095154|gb|AAM08020.1| hypothetical protein [Providencia rettgeri] gi|262318129|dbj|BAI48455.1| hypothetical protein [Proteus mirabilis] Length = 302 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 80/238 (33%), Gaps = 17/238 (7%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSK-TNRTFQVFLCPNGRKNSP 57 + M ++ D ETTGL + ++ IIE+G V++L ++ P G+ Sbjct: 49 EQPM--VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDP-GKPIPE 105 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 +L GITDE ++ + ++ + + + +AHNA+FD F + Sbjct: 106 LITELTGITDEMVQGQRIDDALVASW----LSDDPLVVAHNAQFDRPFFEKRFAALGHLS 161 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S + L L Y + LL + ++ Sbjct: 162 WACSASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFQLLPESVANLLSE 221 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231 + + F ++ +K + I+++EL + + L Sbjct: 222 ADRRTVLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279 >gi|242064994|ref|XP_002453786.1| hypothetical protein SORBIDRAFT_04g017420 [Sorghum bicolor] gi|241933617|gb|EES06762.1| hypothetical protein SORBIDRAFT_04g017420 [Sorghum bicolor] Length = 246 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 +M + D+E TGLD DRI+EI + + D T + Sbjct: 64 RMPLVWIDLEMTGLDITKDRILEIACI-ITDGKLTKQ 99 >gi|59712989|ref|YP_205765.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114] gi|59481090|gb|AAW86877.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) [Vibrio fischeri ES114] Length = 213 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 75/170 (44%), Gaps = 7/170 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETT L+ + ++ I A+++ + T++T + L P + + +++K+H + + Sbjct: 31 VSIDCETTSLNPNHAELVSIAAIKIKNNRVLTSQTIHLKLTPP-QSLNSDSIKIHQLRHQ 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L S ++ +F ++ ++ ++D ++ R PL S I + Sbjct: 90 DLHHGLSEQQAMTQLLEFIGNRHIV--GYHIRYDKKILDRACLRHFSHPLPNSLIEVSHI 147 Query: 129 IARRKH---PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + P++ DL+ + + +H AL D+ + +Y+++ Sbjct: 148 YHNKLERLLPNAYYDLSIEAISKHLGLPQADRHDALEDAIAAALIYVRLT 197 >gi|330957749|gb|EGH58009.1| ribonuclease T [Pseudomonas syringae pv. maculicola str. ES4326] Length = 225 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP------NGRKNSPEA 59 +V D+ET G +S D ++EI AV + + T+ + P Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFAGANIEAAALEFTG 92 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116 +KL + ++ + + IF + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETALNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI R H A D+ ++++ ++ Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212 Query: 177 GGSQIN 182 ++ Sbjct: 213 RWKEMG 218 >gi|326385272|ref|ZP_08206935.1| DNA polymerase III subunit epsilon [Gordonia neofelifaecis NRRL B-59395] gi|326196015|gb|EGD53226.1| DNA polymerase III subunit epsilon [Gordonia neofelifaecis NRRL B-59395] Length = 236 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 21/34 (61%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN 41 R + D+ETTGL++ +EIGAVE+L+ Sbjct: 4 RYVALDLETTGLNTLTACPLEIGAVEILENDPRG 37 >gi|313906420|ref|ZP_07839758.1| Exonuclease RNase T and DNA polymerase III [Eubacterium cellulosolvens 6] gi|313468755|gb|EFR64119.1| Exonuclease RNase T and DNA polymerase III [Eubacterium cellulosolvens 6] Length = 221 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 8/101 (7%) Query: 7 MRKIVFDIETTGLDSKND--RI-----IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M+ IV D+E + K++ RI IEIGAV L D + F+ ++ P Sbjct: 1 MKHIVVDLEMNSISRKSEARRICNLETIEIGAVMLDDDLQEISCFRTYVKPEYADGIAGN 60 Query: 60 LKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 + + GITD+ +++ P F+ F ++ H Sbjct: 61 ITILTGITDDMVENAPKFNEALRMFTNWCLGTGDAVTIHAW 101 >gi|317052331|ref|YP_004113447.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] gi|316947415|gb|ADU66891.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] Length = 166 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 5/164 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D ET + + IG V + + R + + P + + +HG+T + Sbjct: 6 AIDFET--ANEQRTSACAIGVVVVENRQIV-RQYARLIRPEPMRFASFNTAVHGLTAADV 62 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P F ++ E +AHN FD+ + L+ P + Sbjct: 63 AGAPVFGELWPEIAADIVS-APLLVAHNTSFDMSVLQHCLRSSGIAANIPDAVCSCRMAK 121 Query: 131 RRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIK 173 + + LN+LCK +GI H + A + ++ ++Y + Sbjct: 122 KLLPQLVNHKLNTLCKHFGIPLNHHDALSDAQAAARIILELYQE 165 >gi|269797822|ref|YP_003311722.1| exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM 2008] gi|269094451|gb|ACZ24442.1| Exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM 2008] Length = 327 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 25/205 (12%) Query: 7 MRKIVFDIE--------------T----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 M IVFD+E T TG II+IGAV+L + F +F+ Sbjct: 1 MNYIVFDLEWNQPYSNDISFMKRTKMPLTG------EIIQIGAVKLNEKMDIIDHFTMFI 54 Query: 49 CPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 P + +L GIT L F + F + ++ + + N Sbjct: 55 KPQYLPRMHKHVRELTGITTHELNHGVPFKTAMQYFQKWCGDEYMLLSWGSDDILILREN 114 Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 L ++ D + +R S + + + I+ H S H AL D+ Sbjct: 115 LMLHKMKALSYDQWVDAQIIYSYQRYGTSQQYSVAHAMEDLNISTEHLSAHNALHDAVFT 174 Query: 168 SDVYIKMMVGGSQINFGFKTNEDRF 192 + + + + +++ E Sbjct: 175 AHICQTLDIAQGILHYDLIRKESSN 199 >gi|260779555|ref|ZP_05888445.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260604364|gb|EEX30668.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 210 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC-PNGRKNSPEALKLHGI 65 + D ETT LD K ++ I A +++ + T++ F+V L P ++ + Sbjct: 30 YVSLDCETTSLDPKRAELVTIAATKIIDNRIITSQPFEVRLRAPQSLDSNSVKIHQIRH 88 >gi|27364640|ref|NP_760168.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6] gi|320155034|ref|YP_004187413.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O] gi|27360785|gb|AAO09695.1| DNA polymerase III epsilon subunit [Vibrio vulnificus CMCP6] gi|319930346|gb|ADV85210.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O] Length = 211 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 73/176 (41%), Gaps = 7/176 (3%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N + D ETT LD ++ I A +++ + T++ F+V L + ++K+H Sbjct: 26 NNKEYVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLR-APQSLDSGSVKIH 84 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 I + L D S + DF N + ++ ++D ++ R PL + Sbjct: 85 KIRHQDLVDGLSEKEALLKLIDFI--GNRPLVGYHIRYDKKILDLACLRHLGFPLANPLV 142 Query: 124 IDTLSIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + P++ DL+ + + + KH AL D+ + V++++ Sbjct: 143 EVSQIYHDKLEKHLPNAYFDLSLDAICRHLDLPIQDKHDALQDAIAAALVFVRLTR 198 >gi|78212673|ref|YP_381452.1| DNA polymerase III, epsilon subunit [Synechococcus sp. CC9605] gi|78197132|gb|ABB34897.1| Exonuclease [Synechococcus sp. CC9605] Length = 280 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 67/219 (30%), Gaps = 14/219 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHGITDE 68 + D ET+GLD + D+ +E+G + + Q FL P A + Sbjct: 53 IIDTETSGLDPQQDQCLELGCILFD--VPSRSVLAQQSFLLP----VDSNAAEPINRIPA 106 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P +++ + +AHNA FD + + +D + Sbjct: 107 AVTRRPQPWREALVWFEHLLDAADLLVAHNAAFDRQWFGLG--VVPATATPWLCTMDDIR 164 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALL----DSHLLSDVYIKMMVGGSQINFG 184 + R + L YG+ + + + D D ++ G + Sbjct: 165 WPAERQLRLRPSVRDLALAYGVPVWAAHRALSDCIYIADVFARCDDLEHLLKRGLEPRQL 224 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + + K R++ E+ E Sbjct: 225 MRARVSFDERHLAKAAGFHWNDPIKGAWTRRLSAREVAE 263 >gi|37681316|ref|NP_935925.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016] gi|37200067|dbj|BAC95896.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016] Length = 213 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 73/176 (41%), Gaps = 7/176 (3%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N + D ETT LD ++ I A +++ + T++ F+V L + ++K+H Sbjct: 28 NNKEYVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLR-APQSLDSGSVKIH 86 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 I + L D S + DF N + ++ ++D ++ R PL + Sbjct: 87 KIRHQDLVDGLSEKEALLKLIDFI--GNRPLVGYHIRYDKKILDLACLRHLGFPLANPLV 144 Query: 124 IDTLSIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + P++ DL+ + + + KH AL D+ + V++++ Sbjct: 145 EVSQIYHDKLEKHLPNAYFDLSLDAICRHLDLPIQDKHDALQDAIAAALVFVRLTR 200 >gi|307702203|ref|ZP_07639163.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis ATCC 35037] gi|307624216|gb|EFO03193.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis ATCC 35037] Length = 829 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 76/181 (41%), Gaps = 8/181 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + + ++ + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIENGEIIDQ-YATDVNPH-EPLDSHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + ++ + ++AHN +FD + L + P Sbjct: 64 QRLAVAPEFSQVAGKIFELVKD--GIFVAHNVQFDANLLAEFLFFEGYELRTPRVDT-VE 120 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + +L LC+ GI + H H AL D+ +++ + M ++ G Sbjct: 121 LAQVLYPQFEKYNLGILCQELGIELEHA--HTALSDAQATAELLLYMRQKLFELPKGLLE 178 Query: 188 N 188 + Sbjct: 179 S 179 >gi|218548595|ref|YP_002382386.1| exodeoxyribonuclease X [Escherichia fergusonii ATCC 35469] gi|218356136|emb|CAQ88753.1| DNA exonuclease X [Escherichia fergusonii ATCC 35469] gi|324113580|gb|EGC07555.1| exonuclease [Escherichia fergusonii B253] gi|325497013|gb|EGC94872.1| exodeoxyribonuclease X [Escherichia fergusonii ECD227] Length = 220 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 17/166 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++D T + P+ R +P+A+ +H IT+ + Sbjct: 4 VIDTETCGL---QGGIVEIASVDVVDGKIT-NPMSHLVRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEEVIPHYY-----GSDWYVAHNASFDRRVLPEMPGEWICT-------MKLSRHL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKSRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 >gi|323499174|ref|ZP_08104152.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326] gi|323315807|gb|EGA68840.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326] Length = 239 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGLDS+ D II IG V L+ N+ + P + + E++ +HGIT Sbjct: 49 FLAMDFETTGLDSEQDDIITIGTVPFTLNRILVNQAKHWTVRP-RKPLAEESVVIHGITH 107 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEW 94 + D P + ++ + + + Sbjct: 108 SDVLDAPDLTEVYPQVLAEMSNRIMVV 134 >gi|239939981|ref|ZP_04691918.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] gi|239986465|ref|ZP_04707129.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 11379] gi|291443411|ref|ZP_06582801.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] gi|291346358|gb|EFE73262.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] Length = 241 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ V R + + P G P A ++HG+ D+ L Sbjct: 11 AFDTETTGVDVERDRIVSAALVAQDTAGGRVRVTRWLVNP-GIPVPPGATEIHGLADDHL 69 Query: 71 KDKPSFSSIFS 81 + + + Sbjct: 70 QRNGRWPAPVM 80 >gi|150390277|ref|YP_001320326.1| exonuclease, RNase T and DNA polymerase III [Alkaliphilus metalliredigens QYMF] gi|149950139|gb|ABR48667.1| Exonuclease, RNase T and DNA polymerase III [Alkaliphilus metalliredigens QYMF] Length = 192 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 62/188 (32%), Gaps = 22/188 (11%) Query: 7 MRKIVFDIE------------------TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 M+ I+FD E T L + IIEIGAV+ D + TFQ+F+ Sbjct: 1 MKYIIFDFEFNSAFRIDRKTKRLMKGNTNPLCPQ--EIIEIGAVKTNDEFEIEETFQMFV 58 Query: 49 CPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 P K P+ K IT+E L S +S + + NE + Sbjct: 59 RPVLYTKLHPKVKKKTQITNEDLLGGKSLNSSITALQHWINEDEFIMCSWGKDDINELKR 118 Query: 108 AE-LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 I + +D I + + P + H AL DS Sbjct: 119 NCSFFEIQTNWIDKYCDIQKMCMNYLDLPKGKQIGLKKAVETFNIEIDSRFHKALNDSIY 178 Query: 167 LSDVYIKM 174 + + K+ Sbjct: 179 TAKILKKL 186 >gi|325963971|ref|YP_004241877.1| DNA polymerase III subunit epsilon [Arthrobacter phenanthrenivorans Sphe3] gi|323470058|gb|ADX73743.1| DNA polymerase III, epsilon subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 236 Score = 48.8 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 69/215 (32%), Gaps = 5/215 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEA 59 M N + + FD+ETTG +S+ RI+ +V ++D+ + R + P + + Sbjct: 1 MSTWNTLPRAAFDLETTGRNSRAARIVT-ASVTVVDHQAEVMREHEWLADPGVEIPTEAS 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFW---DFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 T++ ++ + E + N IA NA +D + AE R Sbjct: 60 DVHGITTEQARREGRPAHEVTREVAAALQELFDSNIPVIAFNASYDFTVLAAESARYGIP 119 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 L ++D + ++ + + + H + D+ V M Sbjct: 120 QLTRFPVLDPYIMNKQVDRYRKGKRTLTALCEEYGVVLDNAHTSAADALATLRVLDAMAG 179 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 +++ + R Sbjct: 180 KFPKLSMPASQLHQLQVDWAVSQAADFQGYLRKTK 214 >gi|148977184|ref|ZP_01813811.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3] gi|145963466|gb|EDK28729.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3] Length = 210 Score = 48.8 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66 + D ETT LD ++ I A +++ + T++ F+V L P + + Sbjct: 30 YVSLDCETTSLDPNQAELVTIAATKIIGNRIITSKPFEVRLRAPQSLDCNSIKIHRIRHQ 89 >gi|260774372|ref|ZP_05883286.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] gi|260610499|gb|EEX35704.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] Length = 215 Score = 48.8 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQ 45 I D ETT LD + ++ I A +++ + T++ F Sbjct: 31 ISLDCETTSLDPQRAELVSIAATKIIDNRILTSQAFH 67 >gi|149912277|ref|ZP_01900850.1| exonuclase [Moritella sp. PE36] gi|149804647|gb|EDM64704.1| exonuclase [Moritella sp. PE36] Length = 234 Score = 48.8 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFL 48 D ETTGL++K D I+ IG VEL + + + Sbjct: 48 AVDFETTGLNAKQDNILSIGYVELAGSKIRLDSCYHQIV 86 >gi|320159156|ref|YP_004191534.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O] gi|319934468|gb|ADV89331.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O] Length = 238 Score = 48.8 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 14/26 (53%), Positives = 20/26 (76%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL 34 + D ETTGLD+K+D+I+ IG V+L Sbjct: 52 FLALDFETTGLDAKHDKILSIGMVDL 77 >gi|262041960|ref|ZP_06015142.1| exodeoxyribonuclease 10 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040658|gb|EEW41747.1| exodeoxyribonuclease 10 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 219 Score = 48.8 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 62/162 (38%), Gaps = 17/162 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++D T + P+ R SP+A+ +H IT+E + Sbjct: 4 VIDTETCGL---QGGIVEIASVDIVDGQIT-NPMSHLVRPD-RPISPQAMAIHRITEEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I + + ++AHNA FD + + Sbjct: 59 ADKPWIEEIIPHYH-----GSRWYVAHNASFDRRVLPEMHGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S L K T H AL D ++ + + + Sbjct: 107 WPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYITAALLL 148 >gi|27367317|ref|NP_762844.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6] gi|27358886|gb|AAO07834.1| DNA polymerase III epsilon subunit [Vibrio vulnificus CMCP6] Length = 245 Score = 48.8 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 14/26 (53%), Positives = 20/26 (76%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL 34 + D ETTGLD+K+D+I+ IG V+L Sbjct: 53 FLALDFETTGLDAKHDKILSIGMVDL 78 >gi|259156611|gb|ACV96554.1| exonuclease, RNase T and DNA polymerase III [Vibrio fluvialis Ind1] Length = 301 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 81/238 (34%), Gaps = 17/238 (7%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSK-TNRTFQVFLCPNGRKNSP 57 + M ++ D ETTGL + ++ IIE+G V++L ++ P G+ Sbjct: 49 EQPM--VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDP-GKPIPE 105 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 +L GITDE ++ + ++ + + + +AHNA+FD F + Sbjct: 106 LITELTGITDEMVQGQHIDDALVASW----LSDDPLVVAHNAQFDRPFFEKRFAALGHLS 161 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S + L L Y + HLL + ++ Sbjct: 162 WACSASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSE 221 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231 + + F ++ +K + I+++EL + + L Sbjct: 222 ADRRTVLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279 >gi|222152791|ref|YP_002561968.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus uberis 0140J] gi|222113604|emb|CAR41463.1| putative ATP-dependent DNA helicase [Streptococcus uberis 0140J] Length = 831 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 16/228 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 MI++ + + V D+E T ++ II++G V +L + TFQ + P+ S Sbjct: 12 MIKEFEKKYAVIDLEAT--NAGSTASIIQVGIV-ILQGGEIRETFQTDVNPH-EPLSEHI 67 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L GI+DE L P FS + +D ++ ++AHN KFD + + Sbjct: 68 KSLTGISDEQLSKAPDFSQVAKTIYDLIHD--CIFVAHNVKFDANLLA--ESLFFEGFEL 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + IDT+ +A+ +P+ S+ + + H A+ D+ + +++K+ S Sbjct: 124 RTPRIDTVELAQVFYPTFEKYNLSVLSSE-LGLDLSDAHTAIADAIATAKLFLKLQEKIS 182 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE---ELDEH 224 QI + + + RD + + E E H Sbjct: 183 QIPLE---TLEGLADLSDNLIFETGQMIRDALIEAKPYDERIYEKVNH 227 >gi|182439793|ref|YP_001827512.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780457|ref|ZP_08239722.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf. griseus XylebKG-1] gi|178468309|dbj|BAG22829.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660790|gb|EGE45636.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf. griseus XylebKG-1] Length = 241 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ V R + + P G P A ++HG+TD+ L Sbjct: 11 AFDTETTGVDVEQDRIVSAALVAQDTAGGRVRVTRWLVNP-GVPVPPGATEVHGLTDDHL 69 Query: 71 KDKPSFSSIFS 81 + + + Sbjct: 70 QRNGRWPAPVM 80 >gi|163857665|ref|YP_001631963.1| putative exonuclease [Bordetella petrii DSM 12804] gi|163261393|emb|CAP43695.1| putative exonuclease [Bordetella petrii] Length = 177 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 19/45 (42%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 D+ETTGL + + I+E AV + R F + G Sbjct: 12 DLETTGLSTASCEILEFAAVHVGPDGAIEREFSQVVRTRGTVPPF 56 >gi|319760500|ref|YP_004124438.1| ribonuclease T [Candidatus Blochmannia vafer str. BVAF] gi|318039214|gb|ADV33764.1| ribonuclease T [Candidatus Blochmannia vafer str. BVAF] Length = 221 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 18/191 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLC--PNGRKNSPEALKLH 63 +V D+ET GL++ D ++EI + L + + + P + Sbjct: 21 VVIDVETAGLNANTDALLEIATITLKMDSDGWLCMDNVLHFNIKSFPGANLHPSALALNK 80 Query: 64 -------GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ----- 111 + + + A +AHNA FD FI A ++ Sbjct: 81 IDPNNPLRFAVTEQEALNEIFKMVNMGIKIHECHKAIIVAHNASFDHSFIMAAIERISDT 140 Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 N + + + A + L + CK GI H AL D+ + ++ Sbjct: 141 NNNMNVNPFHPFVTFDTAALSGLVFGQTVLATACKHAGIVFDKSKAHSALYDTEKTAILF 200 Query: 172 IKMMVGGSQIN 182 +++ ++ Sbjct: 201 CELVNIWKRLG 211 >gi|323526920|ref|YP_004229073.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. CCGE1001] gi|323383922|gb|ADX56013.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. CCGE1001] Length = 203 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTF 44 ++ M + D+E TGLD +DRIIEI V D F Sbjct: 15 RSDMNLVWLDMEMTGLDPDSDRIIEIAVVVTNSTLDRMVEGPVF 58 >gi|212212262|ref|YP_002303198.1| exodeoxyribonuclease I [Coxiella burnetii CbuG_Q212] gi|212010672|gb|ACJ18053.1| exodeoxyribonuclease I [Coxiella burnetii CbuG_Q212] Length = 458 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 44/155 (28%), Gaps = 3/155 (1%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEA 59 + ++ + +D+ETTGL+ D+II+ A+ + ++ + P+ + Sbjct: 1 MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILIRLNPDVIPSPEAM 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + H + + + + E N + +N N P Sbjct: 61 II-HRFSIDQMLSGKAEIEAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPPY 119 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154 + + + L Sbjct: 120 THQYDNFCRRMDLYPLTILYYLFKPNALNWPDPFD 154 >gi|113955550|ref|YP_730762.1| DNA polymerase III subunit epsilon [Synechococcus sp. CC9311] gi|113882901|gb|ABI47859.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. CC9311] Length = 263 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 76/220 (34%), Gaps = 16/220 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET+GLD + +EIGA+ + L A + Sbjct: 42 IIDTETSGLDPEAHHCLEIGAILFDVSSRQILAQMSCLL-----PVESNAAEAINRIPAA 96 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P ++ + +AHNA FD + + L ++ + Sbjct: 97 VTRLPQPWEPGLHYFQELLKAADLLVAHNAAFDQQWFGRG--HLPATDLPWLCSMEDMRW 154 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQINFGFKT 187 + K SR + L Y I + H AL D L++V+ + + + ++ Sbjct: 155 PKEKQLRSRPSVRDLALAYEIPVWAA--HRALSDCIYLAEVFRRCDQLEQLIERGLEPRS 212 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF----TRITKEELDE 223 + + + + + + P+ R+++ E++E Sbjct: 213 LMKAQVSYDDRQLARDAGFRWNDPVKGAWTRRLSEREVNE 252 >gi|94496850|ref|ZP_01303425.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease [Sphingomonas sp. SKA58] gi|94423863|gb|EAT08889.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease [Sphingomonas sp. SKA58] Length = 312 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 16/26 (61%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL 35 + D+ETTGLD + DRIIE+ Sbjct: 67 VAVDVETTGLDRETDRIIELAVQRFR 92 >gi|154174963|ref|YP_001408508.1| DNA polymerase III subunit epsilon [Campylobacter curvus 525.92] gi|112803051|gb|EAU00395.1| nickel transport permease component NikD [Campylobacter curvus 525.92] Length = 273 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 15/210 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIET+G + +IIEIGA+++ + + R F+ F+ + +L GI+ L Sbjct: 78 IVDIETSGGITSG-QIIEIGALKIKNGVEIGR-FESFV--DAPFVPENITQLTGISQSDL 133 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 PS S+ F + ++AHN FD GFI+ L I L +R + T+ ++ Sbjct: 134 TGAPSLKSVLERF--KIFLGTSVFVAHNVNFDYGFISQSLSNIGLGML-LNRKLCTIDLS 190 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 RR S + L SL + G + + H AL D+ +++ + + S++ F ++ ED Sbjct: 191 RRTIASQKYGLGSLKELLG---INNTHHRALNDAIAATEI---LKICISRLPFSIQSVED 244 Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 KT P++ L + +E Sbjct: 245 LINFS--KTAPSMKLKPEPSLQNSDAIADE 272 >gi|197335542|ref|YP_002157176.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11] gi|197317032|gb|ACH66479.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11] Length = 213 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 75/170 (44%), Gaps = 7/170 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETT L+ + ++ I A+++ + T++T + L P + + +++K+H + + Sbjct: 31 VSIDCETTSLNPNHAELVSIAAIKIKNNRVLTSQTIHLKLTPP-QSLNSDSIKIHQLRHQ 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L S ++ +F N + ++ ++D ++ R PL S I + Sbjct: 90 DLHHGLSEQQAMTQLLEFI--GNRPIVGYHIRYDKKILDRACLRHFSHPLPNSLIEVSHI 147 Query: 129 IARRKH---PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + P++ DL+ + + +H AL D+ + +Y+++ Sbjct: 148 YHNKLERLLPNAYYDLSIEAISKHLGLPQTERHDALEDAIAAALIYVRLT 197 >gi|170696330|ref|ZP_02887460.1| Exonuclease RNase T and DNA polymerase III [Burkholderia graminis C4D1M] gi|170138736|gb|EDT06934.1| Exonuclease RNase T and DNA polymerase III [Burkholderia graminis C4D1M] Length = 203 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 51/195 (26%), Gaps = 9/195 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ M + D+E TGLD +DRIIEI V D ++ Sbjct: 15 RSDMNLVWLDMEMTGLDPDSDRIIEIAVVVTNSTLDRMAEGPVL------AIHQSDETLA 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K+ + + G I +D Sbjct: 69 KMDQWNQNTHGRSGLIDRVKASTVSEIEATEQIRAFLAQYVPPGKSPMCGNSICQDRRFM 128 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +R + L + L LC+R+ I + A+ + I + + Sbjct: 129 ARWMPELETFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYRE 188 Query: 181 INFGFKTNEDRFFKE 195 + E Sbjct: 189 HFLIPPAPDASMNAE 203 >gi|37677065|ref|NP_937461.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016] gi|37201610|dbj|BAC97431.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016] Length = 239 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 14/26 (53%), Positives = 20/26 (76%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL 34 + D ETTGLD+K+D+I+ IG V+L Sbjct: 53 FLALDFETTGLDAKHDKILSIGMVDL 78 >gi|167752075|ref|ZP_02424202.1| hypothetical protein ALIPUT_00317 [Alistipes putredinis DSM 17216] gi|167660316|gb|EDS04446.1| hypothetical protein ALIPUT_00317 [Alistipes putredinis DSM 17216] Length = 164 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 49/169 (28%), Gaps = 6/169 (3%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+ + D ET + + I +G V + + + + + P S ++HG+ Sbjct: 1 MKDFVAIDFET--ANRERTSICSVGLVRVENGDIREKIY-RLIRPYPDYYSSWNTRIHGL 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T F ++++ +AHN+ FD G + A ++ D Sbjct: 58 TYRDTAHAAPFPEVWADISPELAG--LPLVAHNSPFDEGCLKAAFRQYGMAYPDYRFFCT 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + R N H + + Sbjct: 116 CRASRRVFGRELPNHQLQTVAARCGFDLRDHHHALADAEACAWIARLIL 164 >gi|315182194|gb|ADT89107.1| DNA polymerase III, alpha subunit [Vibrio furnissii NCTC 11218] Length = 184 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 8/161 (4%) Query: 23 NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSE 82 DR IEIGAV+L+D TFQ + P G + S GIT+ L+ P + +E Sbjct: 2 GDRAIEIGAVKLVDGQVAG-TFQQLMNP-GFRVSGFIEGYTGITNTMLRTAPRCEEVMAE 59 Query: 83 FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTLSIARRKHPSSRNDL 141 F F + +AHNA FD F++AE RI + + + P+ + Sbjct: 60 FAHFIGD--TPLVAHNASFDKRFLDAEFDRIGVRYPGQFACSMLIARRLIQNAPTHKLGD 117 Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 K+ + + H AL DS + + +++ M+ + Sbjct: 118 LVRFKQI---ENDGTFHRALADSQMTASLWMLMVNDLRERG 155 >gi|261210416|ref|ZP_05924710.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341] gi|260840474|gb|EEX67040.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341] Length = 209 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 76/171 (44%), Gaps = 7/171 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETT LD K ++ I A +++ + T++ F+V LC + ++++H I Sbjct: 30 YVSLDCETTSLDPKRAELVTIAATKIIDNRILTSQPFEVRLC-APQSLDSGSVRIHKIRH 88 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L+D S + DF N + ++ ++D ++ ++ PL I + Sbjct: 89 QDLQDGLSEKEALIQLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQ 146 Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + P++ DL+ + + + KH AL D+ + V++++ Sbjct: 147 IYHDKLEKHLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIAAALVFVRLT 197 >gi|254507936|ref|ZP_05120065.1| exonuclease, RNase T and DNA polymerase III [Vibrio parahaemolyticus 16] gi|219549172|gb|EED26168.1| exonuclease, RNase T and DNA polymerase III [Vibrio parahaemolyticus 16] Length = 239 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP 50 + D ETTGLDS+ D II IG V L+ N+ + P Sbjct: 49 FLAMDFETTGLDSEQDDIITIGTVPFTLNRVLINQAKHWTVRP 91 >gi|160935985|ref|ZP_02083359.1| hypothetical protein CLOBOL_00882 [Clostridium bolteae ATCC BAA-613] gi|158441227|gb|EDP18944.1| hypothetical protein CLOBOL_00882 [Clostridium bolteae ATCC BAA-613] Length = 337 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 57/180 (31%), Gaps = 12/180 (6%) Query: 7 MRKIVFDIE-TTGLDSKND-------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M IVFD+E + K D IIEIGAV+L + TF + P K Sbjct: 1 MNYIVFDLEWNQSPNGKEDSVEHLPFEIIEIGAVKLNGNFEQTGTFHKLIRPKVYKKMHF 60 Query: 59 ALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRIN 114 + D ++ F + + F + E+ + + ++ A + N Sbjct: 61 KISEVTHMDMAELRQEGEPFDVVMNRFLAWCGEEEYCFCTWGSMDLTELQRNMAYHKLPN 120 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P + + + + R H AL D++ + + Sbjct: 121 PFPRPLLYLDIQKLYCLQYGDGKNKVSLDMAVQIQGMEEERPFHRALDDAYYTGRILSVL 180 >gi|54301691|ref|YP_131684.1| hypothetical protein PBPRB0011 [Photobacterium profundum SS9] gi|46915111|emb|CAG21884.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 191 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 5/156 (3%) Query: 8 RKIVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + FD+E G D K IIEIG EL D + R Q ++ P + S +L Sbjct: 10 RIVCFDLEMCCWNDGRDPKTGEIIEIGLAELDLDTGEIVRRTQHYVKPEHDEISEFCTEL 69 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI + + + + + A D + K P Sbjct: 70 TGIKPQVIHKNGKPLAEILRSMESKFGGKHKIYAAWGHDDRILHAECAAKGLKVPFTEYI 129 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158 + + +R R + + G+ R Sbjct: 130 NLAMIFRLQRHVKKKRCGQRAAMEIAGLEWEGRQHS 165 >gi|261210981|ref|ZP_05925271.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341] gi|260839956|gb|EEX66556.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341] Length = 233 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP 50 + D ETTGL+ + + I+ +G V + P Sbjct: 45 VALDFETTGLNPQQEAILSVGLVPFTTSRIALKEARYWLVKP 86 >gi|330720110|gb|EGG98518.1| Ribonuclease T [gamma proteobacterium IMCC2047] Length = 187 Score = 48.4 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 62/184 (33%), Gaps = 13/184 (7%) Query: 15 ETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF 69 ET G ++ D ++EI AV + T + P G A+K GI Sbjct: 2 ETGGFNAATDALLEIAAVPIQMDEQGLLYPGETLSFHVKPFEGANIEEAAIKFTGIDPYH 61 Query: 70 --------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + + + A + HNA FD GF+NA +R + Sbjct: 62 PLRIANTEQEAMDGIFRTVRKAVKASGCKRAILVGHNAHFDHGFVNAAAERCDIKRNPFH 121 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + +++ + L C+ I S+ H A D+ ++++ + ++ Sbjct: 122 PFSNFDTVSLAGLAVGQTVLARACEVAEIEFSNEEAHSARYDTEKTAELFCFIANRWREL 181 Query: 182 NFGF 185 Sbjct: 182 GGWL 185 >gi|297195480|ref|ZP_06912878.1| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis ATCC 25486] gi|297152819|gb|EFH32011.1| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis ATCC 25486] Length = 241 Score = 48.4 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 7/74 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD---YSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 FD ETTG+D + DRI+ AV + D R + + P G P A+++HG+TD Sbjct: 11 AFDTETTGVDVEEDRIVS-AAVVVQDSPGGRP--RITRWLVNP-GVPVPPGAIEVHGLTD 66 Query: 68 EFLKDKPSFSSIFS 81 + L+ + + Sbjct: 67 DHLQRNGRWPAPVM 80 >gi|288923046|ref|ZP_06417199.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f] gi|288345596|gb|EFC79972.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f] Length = 296 Score = 48.4 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 7/171 (4%) Query: 15 ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP 74 ETTGL DR++ + V + L P P + +HG+T E L P Sbjct: 2 ETTGLWPARDRVLSVAVVLTAPDGAVQGRWSTLLDPG---CDPGPVHIHGLTRERLAGSP 58 Query: 75 SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH 134 +F+++ E + +AHNA FD + E RI + R+ +R Sbjct: 59 TFAAVVDELSELLAG--RVLVAHNAAFDWRMLAGEALRIGRTLPVEWRLCTLTLASRLGL 116 Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L +L + +G+T H A D+ +L+ + +++ ++ Sbjct: 117 ELASLRLAALAEHWGVTQRRA--HDAEDDAEVLAALLPRILSRAAEQFLEL 165 >gi|119944051|ref|YP_941731.1| exonuclease, RNase T and DNA polymerase III [Psychromonas ingrahamii 37] gi|119862655|gb|ABM02132.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas ingrahamii 37] Length = 228 Score = 48.4 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNG 52 DIE TGLD K D+++ IG + +++ F + G Sbjct: 45 ALDIEMTGLDPKKDQMVSIGIIPIINAK-IQPEFAQHKLIKIQG 87 >gi|125973027|ref|YP_001036937.1| exonuclease, RNase T and DNA polymerase III [Clostridium thermocellum ATCC 27405] gi|256004824|ref|ZP_05429799.1| Exonuclease RNase T and DNA polymerase III [Clostridium thermocellum DSM 2360] gi|281417237|ref|ZP_06248257.1| Exonuclease RNase T and DNA polymerase III [Clostridium thermocellum JW20] gi|125713252|gb|ABN51744.1| Exonuclease, RNase T and DNA polymerase III [Clostridium thermocellum ATCC 27405] gi|255991274|gb|EEU01381.1| Exonuclease RNase T and DNA polymerase III [Clostridium thermocellum DSM 2360] gi|281408639|gb|EFB38897.1| Exonuclease RNase T and DNA polymerase III [Clostridium thermocellum JW20] gi|316940738|gb|ADU74772.1| Exonuclease RNase T and DNA polymerase III [Clostridium thermocellum DSM 1313] Length = 215 Score = 48.4 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 81/216 (37%), Gaps = 10/216 (4%) Query: 7 MRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M IV+D+E L+SK + IIEIGA++L + + F F+ P K + Sbjct: 1 MNYIVYDLE---LNSKPFKSSIPNEIIEIGAIKLNENLQEIGMFSSFIKPKYFKKLFSVV 57 Query: 61 -KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + IT E + SF ++ +F + + + +N + RI D L Sbjct: 58 KQKTKITQEQINSADSFRNVIKQFIRWIGDDYLLISWGHDDVLNLILNCKFNRIKIDWLK 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + I A PS + + H AL D+ + ++ + Sbjct: 118 RNIDIQKQFSAIYHLPSGQRYSLENALALIGVEIDENLHRALTDAQYTAKIFKSIFDKLD 177 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 + +D++ + KK + LK+ K + + Sbjct: 178 LEVYNTVHIKDKYKRNIKKLIKTKPKLKQSKLVIEK 213 >gi|195651097|gb|ACG45016.1| oligoribonuclease [Zea mays] Length = 249 Score = 48.4 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 +M + D+E TGLD DRI+EI + + D T + Sbjct: 67 RMPLVWIDLEMTGLDITKDRILEIACI-ITDGKLTKQ 102 >gi|212721064|ref|NP_001131502.1| hypothetical protein LOC100192839 [Zea mays] gi|194691708|gb|ACF79938.1| unknown [Zea mays] Length = 249 Score = 48.4 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 +M + D+E TGLD DRI+EI + + D T + Sbjct: 67 RMPLVWIDLEMTGLDITKDRILEIACI-ITDGKLTKQ 102 >gi|148925831|ref|ZP_01809518.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni CG8486] gi|145844817|gb|EDK21921.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni CG8486] Length = 256 Score = 48.4 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 6/122 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIE+TG I+EIGAV++ + + R FQ F+ ++ +L GIT E + Sbjct: 74 IVDIESTG-SVSKGEILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYEMV 129 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ PS + + S+F +++ ++AHN +FD FI+ L L RI Sbjct: 130 ENAPSLTKVLSDF--RLFLKDSIFVAHNVRFDYSFISKALNECGFGILLNRRICTIEFAQ 187 Query: 131 RR 132 Sbjct: 188 CC 189 >gi|325293446|ref|YP_004279310.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3] gi|325061299|gb|ADY64990.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3] Length = 202 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 5/150 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I D ET + + IG + D R + + P + SP + +HGI Sbjct: 1 MKTIAIDFET--ANEERGSACSIGLAWIEDGEIV-RVEERLIRPKDMRFSPFNIAVHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D P F + EF D F+ AHNA FD + A + + D S + Sbjct: 58 PADVEDAPEFPDVMEEFIDDFHGATMI--AHNAAFDFSVMRASFDKYRQSYPDLSYLCSV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156 + + LN + + H + Sbjct: 116 KIARHVWPQLASHKLNVIAHHLQLRFVHHN 145 >gi|294626315|ref|ZP_06704917.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665592|ref|ZP_06730872.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599316|gb|EFF43451.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604641|gb|EFF48012.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 213 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 13/185 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D ++EI V + T L P G + P++L++ G Sbjct: 28 VVVDVETGGFDWNKHALLEIACVPIEMGADGRFFPGETASAHLVPAPGLEIDPKSLEITG 87 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q A + HNA FD+ F+NA + R+ Sbjct: 88 IVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 147 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ + L + G+ + H A+ D+ + ++ K+ Sbjct: 148 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCKIAN 207 Query: 177 GGSQI 181 Sbjct: 208 AWPGP 212 >gi|259156119|gb|ACV96067.1| exonuclease, RNase T and DNA polymerase III [Providencia alcalifaciens Ban1] Length = 301 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 81/238 (34%), Gaps = 17/238 (7%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSK-TNRTFQVFLCPNGRKNSP 57 + M ++ D ETTGL + ++ IIE+G V++L ++ P G+ Sbjct: 49 EQPM--VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDP-GKPIPE 105 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 +L GITD+ ++ + ++ + + + +AHNA+FD F + Sbjct: 106 LITELTGITDDMVRGQHIDDALVASW----LSDDPLVVAHNAQFDRPFFEKRFAALGHLS 161 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S + L L Y + HLL + ++ Sbjct: 162 WACSASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSE 221 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQTL 231 + + F ++ +K + I+++EL + + L Sbjct: 222 ADRRTVLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDL 279 >gi|189423312|ref|YP_001950489.1| exonuclease RNase T and DNA polymerase III [Geobacter lovleyi SZ] gi|189419571|gb|ACD93969.1| Exonuclease RNase T and DNA polymerase III [Geobacter lovleyi SZ] Length = 302 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 15/23 (65%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL 34 D ETTGL+ D+IIE+G V Sbjct: 47 LDTETTGLNPACDKIIELGIVAF 69 >gi|78047167|ref|YP_363342.1| ribonuclease T [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925832|ref|ZP_08187202.1| RNAse T [Xanthomonas perforans 91-118] gi|123585431|sp|Q3BV71|RNT_XANC5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|78035597|emb|CAJ23268.1| ribonuclease T [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543767|gb|EGD15180.1| RNAse T [Xanthomonas perforans 91-118] Length = 213 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 13/185 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D ++EI V + T L P G + P++L++ G Sbjct: 28 VVVDVETGGFDWNKHALLEIACVPIEMDTDGRFFPGETASAHLVPAPGLEIDPKSLEITG 87 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q A + HNA FD+ F+NA + R+ Sbjct: 88 IVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 147 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ + L + G+ + H A+ D+ + ++ K+ Sbjct: 148 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCKIAN 207 Query: 177 GGSQI 181 Sbjct: 208 AWPGP 212 >gi|21242321|ref|NP_641903.1| ribonuclease T [Xanthomonas axonopodis pv. citri str. 306] gi|24638164|sp|Q8PM62|RNT_XANAC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|21107753|gb|AAM36439.1| ribonuclease T [Xanthomonas axonopodis pv. citri str. 306] Length = 213 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 13/185 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D ++EI V + T L P G + P++L++ G Sbjct: 28 VVVDVETGGFDWNKHALLEIACVPIEMGADGRFFPGETASAHLVPAPGLEIDPKSLEITG 87 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q A + HNA FD+ F+NA + R+ Sbjct: 88 IVLDHPFRFAKQEKEALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 147 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ + L + G+ + H A+ D+ + ++ K+ Sbjct: 148 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCKIAN 207 Query: 177 GGSQI 181 Sbjct: 208 AWPGP 212 >gi|86147892|ref|ZP_01066197.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222] gi|218710857|ref|YP_002418478.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32] gi|85834319|gb|EAQ52472.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222] gi|218323876|emb|CAV20237.1| putative DNA polymerase III, epsilon subunit [Vibrio splendidus LGP32] Length = 210 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66 + D ETT LD ++ I A +++ + T++ F+V L P + + Sbjct: 30 YVSLDCETTSLDPNQAELVTIAATKIIGNRIITSQPFEVRLRAPQSLDCNSIKIHRIRHQ 89 >gi|300717064|ref|YP_003741867.1| exodeoxyribonuclease X [Erwinia billingiae Eb661] gi|299062900|emb|CAX60020.1| Exodeoxyribonuclease X [Erwinia billingiae Eb661] Length = 221 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 18/183 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+E+ +V+++D +CP+ R SP A+ +H IT+ + Sbjct: 4 VIDTETCGL---QGGIVEVASVDVIDGKIV-NPMSDLICPD-RPISPHAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + + + + Sbjct: 59 ADKPPIEHAIGRYH-----GSPYYVAHNASFDRRMLPEMHGEWICTMTLARGLWPGIKYS 113 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGA--------LLDSHLLSDVYIKMMVGGSQIN 182 + + + + + +++ +M+V GS Sbjct: 114 NQALRETLKLEVTPPADLHAHRALYDCYVTAALLIRIMDYSGWDAAEMIRRMLVKGSSTT 173 Query: 183 FGF 185 F F Sbjct: 174 FPF 176 >gi|289804727|ref|ZP_06535356.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 63 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 4/63 (6%) Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---A 235 Q + F + ++ + T+ I + + + ++EEL H+ + + K Sbjct: 1 GQTSMTFAMEGETQRQQGEATIQRI-VRQASRLRVVFASEEELAAHESRLDLVQKKGGSC 59 Query: 236 IWD 238 +W Sbjct: 60 LWR 62 >gi|330998364|ref|ZP_08322188.1| exonuclease [Paraprevotella xylaniphila YIT 11841] gi|329568470|gb|EGG50275.1| exonuclease [Paraprevotella xylaniphila YIT 11841] Length = 164 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 52/167 (31%), Gaps = 6/167 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D ET + + I +G V + + T R + + P + ++HG++ + Sbjct: 4 FAAIDFET--ANGQRSSICSVGLVVVRNREITIRHY-RLVRPYPNYYNYWNTQVHGLSFQ 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 F ++ E +AHN FD G + A Q + + Sbjct: 61 DTAHAAPFPEVWREIIPLIEG--LPLVAHNRPFDEGCLKAAFQAYGMEYPGYPFHCTLRA 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 N H AL D+ + + +K++ Sbjct: 119 SRLAFGRDLPNHQLQTVALR-CGYDLTQHHHALADAEACARIALKIL 164 >gi|33240227|ref|NP_875169.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237754|gb|AAP99821.1| DNA polymerase III epsilon subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 236 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 17/24 (70%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL 34 + D ETTGLD + D+ IE+GA+ Sbjct: 16 IVDTETTGLDPEKDQCIEVGAILF 39 >gi|84393062|ref|ZP_00991828.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01] gi|84376314|gb|EAP93196.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01] Length = 210 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66 + D ETT LD ++ I A +++ + T++ F+V L P + + Sbjct: 30 YVSLDCETTSLDPNQAELVTIAATKIIGNRIITSQPFEVRLRAPQSLDCNSIKIHRIRHQ 89 >gi|294811599|ref|ZP_06770242.1| Putative DNA polymerase III epsilon subunit [Streptomyces clavuligerus ATCC 27064] gi|294324198|gb|EFG05841.1| Putative DNA polymerase III epsilon subunit [Streptomyces clavuligerus ATCC 27064] Length = 287 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 FD ETTG+D +NDRI+ V ++ R + + P G P A ++HG+TD+ Sbjct: 57 AFDTETTGVDVENDRIVAAAVVVQDMAGGRP--RITRWLINP-GIPVPPGATEVHGLTDD 113 Query: 69 FLKDKPSFSSI 79 ++ + + Sbjct: 114 HVQRNGRWPAP 124 >gi|262275580|ref|ZP_06053389.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] gi|262219388|gb|EEY70704.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] Length = 239 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 51/164 (31%), Gaps = 1/164 (0%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ET+GLD + D+++ +G VE+ + + + + A H + Sbjct: 55 VLDFETSGLDPEQDKVLSMGWVEIRQSQIRLSSARHILVNQPVLNGYESARIHHLRPETL 114 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 S FS+ +D + + L + + Sbjct: 115 RNCGVSEHHAFSQLFDVMKGKVIVAHGSVIEKRFLARYLTLHYGQINLPLVWLDTLKIEQ 174 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R + D R + H AL D+ +++Y+ Sbjct: 175 YREQLRQVCRDWRLSSVRAAHGLPDYQAHNALNDAIATAELYLA 218 >gi|254391300|ref|ZP_05006504.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|326440213|ref|ZP_08214947.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|197704991|gb|EDY50803.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] Length = 241 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 FD ETTG+D +NDRI+ V ++ R + + P G P A ++HG+TD+ Sbjct: 11 AFDTETTGVDVENDRIVAAAVVVQDMAGGRP--RITRWLINP-GIPVPPGATEVHGLTDD 67 Query: 69 FLKDKPSFSSI 79 ++ + + Sbjct: 68 HVQRNGRWPAP 78 >gi|323493392|ref|ZP_08098514.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546] gi|323312215|gb|EGA65357.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546] Length = 239 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50 + D ETTGL S +D II IG V + N+ + P Sbjct: 49 FLAMDFETTGLSSDDDDIITIGTVPFNLNRIYINQAQHWTVKP 91 >gi|149912028|ref|ZP_01900621.1| ribonuclease T [Moritella sp. PE36] gi|149804889|gb|EDM64924.1| ribonuclease T [Moritella sp. PE36] Length = 231 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 64/186 (34%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIET G +++ D ++EI A +E+ + K + T + P G AL G Sbjct: 19 VVIDIETAGFNAQTDAMLEIAASILEMDEDGYLKISHTLHFNVEPFEGANLEQAALDFTG 78 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A +AHNA FD F++A R Sbjct: 79 IDPTNPLRGAVPEREAITEIYKAVRKGLKDTGCHRAIMVAHNAAFDHAFLSAASNREKIK 138 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C GI H+ H A D+ ++++ ++ Sbjct: 139 RNPFHPFATFDTTTLAGLAVGQTVLAKACVAAGIPFDHKQAHSAKYDTEQTAELFCYIVN 198 Query: 177 GGSQIN 182 + Sbjct: 199 KWKDMG 204 >gi|114562725|ref|YP_750238.1| exonuclease, RNase T and DNA polymerase III [Shewanella frigidimarina NCIMB 400] gi|114334018|gb|ABI71400.1| Exonuclease, RNase T and DNA polymerase III [Shewanella frigidimarina NCIMB 400] Length = 229 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 11/29 (37%), Positives = 18/29 (62%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK 39 D+E TGLD +D++I IG V +++ Sbjct: 45 AIDLEMTGLDPIHDQVISIGLVPIINGVI 73 >gi|90409780|ref|ZP_01217797.1| hypothetical protein P3TCK_03416 [Photobacterium profundum 3TCK] gi|90329133|gb|EAS45390.1| hypothetical protein P3TCK_03416 [Photobacterium profundum 3TCK] Length = 186 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 5/156 (3%) Query: 8 RKIVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + FD+E G D K IIEIG EL D + R Q ++ P + S +L Sbjct: 5 RIVCFDLEMCCWNDGRDPKTGEIIEIGLAELDLDTGEIVRRTQHYVKPEHDEISEFCTEL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI + + + + + A D + K P Sbjct: 65 TGIKPQVIHKNGKPLAEILRSMESKFGGKHKIYAAWGHDDRILHAECAAKGLKVPFTEYI 124 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158 + + +R R + + G+ R Sbjct: 125 NLAMIFRLQRHVKKKRCGQRAAMEIAGLEWEGRQHS 160 >gi|225420339|ref|ZP_03762642.1| hypothetical protein CLOSTASPAR_06683 [Clostridium asparagiforme DSM 15981] gi|225041025|gb|EEG51271.1| hypothetical protein CLOSTASPAR_06683 [Clostridium asparagiforme DSM 15981] Length = 323 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 55/212 (25%), Gaps = 11/212 (5%) Query: 7 MRKIVFDIE-TTGLDSKND-------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M IV D+E + K D IIEIGAV+L + + F + P + Sbjct: 1 MDYIVLDLEWNQSPNGKEDSVEHLPFEIIEIGAVKLDEGFRQKGEFHRLIRPQVYRQLHF 60 Query: 59 ALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINK 115 + D +F + EF D+ + + + N Sbjct: 61 KISEVTHMDMGELKHRGKNFKQVMREFLDWCGTEYCFCTWGSMDLTELQRNMDYFKVPNP 120 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P + R H AL D+ V M Sbjct: 121 FPRPLLYYDVQKLYCMEYGDGKNKPSLDQAVQERGIRQERPFHRALSDAFYTGRVLAVMD 180 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207 + KEE+ ++ K Sbjct: 181 FEQVRPYISVDYFRLPRNKEEEVSLRFPDYAK 212 >gi|300904709|ref|ZP_07122542.1| exonuclease [Escherichia coli MS 84-1] gi|301304416|ref|ZP_07210528.1| exonuclease [Escherichia coli MS 124-1] gi|300403376|gb|EFJ86914.1| exonuclease [Escherichia coli MS 84-1] gi|300840267|gb|EFK68027.1| exonuclease [Escherichia coli MS 124-1] gi|315257344|gb|EFU37312.1| exonuclease [Escherichia coli MS 85-1] Length = 220 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSQLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|239928182|ref|ZP_04685135.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291436512|ref|ZP_06575902.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291339407|gb|EFE66363.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] Length = 238 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 3/106 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL---HGITD 67 FD+ETTG D + DRI+ V L + L P A Sbjct: 11 AFDLETTGTDIETDRIVTAAVVRLEPDGAVSAERTWLLDPGVVIPEQAAAIHGIPTEHAR 70 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 P + + NA++D+ ++ E +R Sbjct: 71 AHGVPAPRAIEEITRAVAEVLRAGTPLVVMNARYDLSLLDRECRRY 116 >gi|302550179|ref|ZP_07302521.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] gi|302467797|gb|EFL30890.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] Length = 242 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 28/83 (33%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ V R + + P + + Sbjct: 12 AFDTETTGVDVETDRIVSAAVVVQDAPGVRPRVSRWLVNPGVPVPAEATAVHGLTEEHLQ 71 Query: 71 KDKPSFSSIFSEFWDFFNEQNAE 93 ++ + + E + EQ Sbjct: 72 RNGRWPAPVVYEIAETLAEQAHA 94 >gi|184200503|ref|YP_001854710.1| DNA polymerase III subunit epsilon [Kocuria rhizophila DC2201] gi|183580733|dbj|BAG29204.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila DC2201] Length = 232 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 65/202 (32%), Gaps = 3/202 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG D + RI+ V + + ++ P A TD Sbjct: 15 FDLETTGRDPQQARIVTASVVLVSPAGDVLQEWEWLADPGVEIPEEAAAVHGVSTDRARA 74 Query: 72 DKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + +E + +A NA +D+ + E +R +P ++D Sbjct: 75 EGRPVAEVAAELSEVLAGFWREGVPVLAFNAAYDLTVLTRETERHGLPAPEPFPVLDPFV 134 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + ++ H R + + H + D+ + + +++ Sbjct: 135 LNKQVHRYRRGKRTLGALCEEYGVVLDAAHTSAEDALATERLAAALADRFAELRQPAAAL 194 Query: 189 EDRFFKEEKKTVPNISLLKRDK 210 + + ++ R K Sbjct: 195 HEAQIGWAAEQAASLQEYFRRK 216 >gi|167621824|ref|YP_001676609.1| exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31] gi|167351565|gb|ABZ74295.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31] Length = 299 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 58/236 (24%), Gaps = 22/236 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK-----TNRTFQVFLCPNGRKNSPEALKLHG 64 I D+ETTG + D IIE+ V F R+ S Sbjct: 47 IYLDVETTGKNPVRDEIIELAMVPFQYDEAGRLCGVGAPFVAL-----REPSAPISAEIT 101 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + SI F A +AHNA FD F + S Sbjct: 102 RITGITNAMVAGQSIDPAMVAAFIAPAAVIVAHNASFDRRFTERFCEAFQAKGWACSMSQ 161 Query: 125 DTLSIARRKHPS------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + + + ++ L S +M+ Sbjct: 162 VDWAGEGFEGTKLSYLASQCGFFFDGHRAENDCLAGLEILARPLASGRT--ALAQMLEAA 219 Query: 179 SQINFGFKTNEDRFFKEEKKTVP----NISLLKRDKPLFTRITKEELDEHDKTIQT 230 ++ + +++ N K + + + + + + + Sbjct: 220 RAPSWRIWAERAPYDFKDRLKDRGYRWNGEDGPTPKAWYIDVPEAQREAELEFLHK 275 >gi|296110637|ref|YP_003621018.1| exonuclease [Leuconostoc kimchii IMSNU 11154] gi|295832168|gb|ADG40049.1| exonuclease [Leuconostoc kimchii IMSNU 11154] Length = 177 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 5/165 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + + + I + ++ F + P S +HG+ Sbjct: 1 MNFIAMDFET--ANHEKHSAVSIAIAVVRHNQVVDK-FYSLIKPET-YFSARNTAVHGLK 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + P F + +++ +AHNA FD + L + + Sbjct: 57 ESDVAQAPKF-PEVWKIIAPLFKEDKLVVAHNAAFDNSILKGTLAYYGIEEPHYMLLDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + + LN++ + +GIT+ H + +Y Sbjct: 116 RTSRKLLPDFKNHKLNTVAENFGITLDHHHNALDDAVAAANILIY 160 >gi|228471624|ref|ZP_04056398.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC 33624] gi|228277043|gb|EEK15729.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC 33624] Length = 1484 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 80/252 (31%), Gaps = 30/252 (11%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + R ++I + + P+G + Sbjct: 2 YLIFDTETTGLPRNYNAPISDSENWPRAVQIAWQLHDEKGALLEHKDFLIIPDGYTIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----- 113 A ++HGI+ E ++ E ++ + + N FD+ + AE R Sbjct: 62 AERIHGISTELATEQGVSIHKVFEEFEKALSKTQYIVGQNIGFDIHIMGAEFYRYGVSTV 121 Query: 114 ----NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + I + + + + H A D + Sbjct: 122 LDKLPILDTCSELTAELCKIPGGRAGKFKYPNLTELHEFLFGTPFAEAHNATADVEATAR 181 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP-------NISLLKRDKPLFTR----ITK 218 + +++ + + E +E P +I+L + L ++ ++ Sbjct: 182 CFFELLRRNEGFSSSAISPEAILLIQENHPSPISLWGLKHINLKSASEKLKSKEQRGLSD 241 Query: 219 EELDEHDKTIQT 230 E+ E+ +Q+ Sbjct: 242 SEISENLALLQS 253 >gi|331002829|ref|ZP_08326343.1| hypothetical protein HMPREF0491_01205 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413318|gb|EGG92686.1| hypothetical protein HMPREF0491_01205 [Lachnospiraceae oral taxon 107 str. F0167] Length = 220 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 9/89 (10%) Query: 7 MRKIVFDIETTGLDSKNDRI-------IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M+ IV D+E G++ K RI IEIGA+ L + + +F+ ++ P + Sbjct: 1 MKHIVVDLEMNGIE-KKHRIFGCTMETIEIGAIMLDENYQEISSFKTYVKPEYNSKIEKN 59 Query: 60 LKL-HGITDEFLKDKPSFSSIFSEFWDFF 87 + GIT+ + + P F+ +F D+ Sbjct: 60 ISRLTGITNNMVVNAPKFNEALKKFSDWC 88 >gi|323144276|ref|ZP_08078898.1| exonuclease [Succinatimonas hippei YIT 12066] gi|322415946|gb|EFY06658.1| exonuclease [Succinatimonas hippei YIT 12066] Length = 232 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLH 63 D ETTGLD D I+ +G V++ + F F+ + S A+ H Sbjct: 49 ALDFETTGLDFNEDLILSMGWVDINRGEIDFSSGFHTFINIADKVKSHSAVINH 102 >gi|258623764|ref|ZP_05718722.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM603] gi|258583961|gb|EEW08752.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM603] Length = 209 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 7/171 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETT LD K ++ I A ++ + T++ F+V LC + ++++H I Sbjct: 30 YVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLC-APQSLDSGSVRIHKIRH 88 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L+D S + DF N + ++ ++D ++ ++ PL I + Sbjct: 89 QDLQDGLSEKEALIQLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQ 146 Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + P++ DL+ + + + KH AL D+ + V++++ Sbjct: 147 IYHDKLEKHLPNAYFDLSLDAICRHLDLPLQDKHDALQDAIAAALVFVRLT 197 >gi|297203185|ref|ZP_06920582.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] gi|197717364|gb|EDY61398.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] Length = 240 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53 FD+ETTG D + RI+ +EL D R + P Sbjct: 11 FDLETTGTDPREARIVTAAVIELRDGQSLGRR-EWLADPGME 51 >gi|58582091|ref|YP_201107.1| ribonuclease T [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623997|ref|YP_451369.1| ribonuclease T [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576299|ref|YP_001913228.1| ribonuclease T [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426685|gb|AAW75722.1| ribonuclease T [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367937|dbj|BAE69095.1| ribonuclease T [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520751|gb|ACD58696.1| ribonuclease T [Xanthomonas oryzae pv. oryzae PXO99A] Length = 211 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 65/185 (35%), Gaps = 13/185 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G DS ++EI V + T L P G + P++L++ G Sbjct: 26 VVVDVETGGFDSNKHALLEIACVPIEMDADGRFFPGDTASAHLVPAPGLEIDPKSLEITG 85 Query: 65 ITDEFLKD--------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q A + HNA FD+ F+NA + R+ Sbjct: 86 IVLDHPFRLAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 145 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ + L + G+ + H A+ D+ + ++ K+ Sbjct: 146 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCKIAN 205 Query: 177 GGSQI 181 Sbjct: 206 AWPGP 210 >gi|258620661|ref|ZP_05715698.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM573] gi|262172598|ref|ZP_06040276.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451] gi|258587176|gb|EEW11888.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM573] gi|261893674|gb|EEY39660.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451] Length = 209 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 7/171 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETT LD K ++ I A ++ + T++ F+V LC + ++++H I Sbjct: 30 YVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLC-APQSLDSGSVRIHKIRH 88 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L+D S + DF N + ++ ++D ++ ++ PL I + Sbjct: 89 QDLQDGLSEKEALIQLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQ 146 Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + P++ DL+ + + + KH AL D+ + V++++ Sbjct: 147 IYHDKLEKHLPNAYFDLSLDAICRHLDLPLQDKHDALQDAIAAALVFVRLT 197 >gi|288941633|ref|YP_003443873.1| ribonuclease T [Allochromatium vinosum DSM 180] gi|288897005|gb|ADC62841.1| ribonuclease T [Allochromatium vinosum DSM 180] Length = 226 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 13/188 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDY----SKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D++ ++E+ AV + + T + P G + P AL +G Sbjct: 21 VVVDVETAGFDAQRHALLEVAAVIIRQRSDGLLEPAPTLACHVLPFVGSELDPRALAFNG 80 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + A + HNA FD+GFI A ++R Sbjct: 81 IDPHHPFRDAISEHDALERILTPIRKAVKSTGCNRAILVGHNAHFDLGFIKAAVERTGYK 140 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ + L + G+ H H A D+ + ++ ++ Sbjct: 141 RNPFHAFSVFDTVTLGGLMFGQTVLAKASRAAGLHWKHSEAHSAAYDAEQTARLFCAVVN 200 Query: 177 GGSQINFG 184 +++ Sbjct: 201 RWRELDPE 208 >gi|254457641|ref|ZP_05071069.1| exonuclease [Campylobacterales bacterium GD 1] gi|207086433|gb|EDZ63717.1| exonuclease [Campylobacterales bacterium GD 1] Length = 231 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 7/176 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D+ETTGL+ + DR+ IG V D NRT + G+K A ++ IT+E Sbjct: 3 IFLDVETTGLE-EIDRVCSIGIVWSEDGE--NRTIYELVN-EGKKIPSLASSINHITNEM 58 Query: 70 LKDKPSFSSIF-SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK KP F + N ++ + HN KFD+ + + +D R+ L Sbjct: 59 LKGKPKFQESEAYKLLTQHNNEDTTIVGHNIKFDLAMLKKSGFNFIGEIIDTLRVTKHLV 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + S L K Y H AL D+ + ++Y ++ + Sbjct: 119 SECEQ--FSLQFLRYELKLYKEEKELLQAHHALSDATIAKNLYEYLLEIQPKEKLA 172 >gi|297198375|ref|ZP_06915772.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] gi|197714433|gb|EDY58467.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] Length = 241 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD ETTG+D + DRI+ AV + D + T R + + P G A +HG+T+E Sbjct: 11 AFDTETTGVDVETDRIVS-AAVVVQDAAGTRPRVSRWLVNP-GVPVPAGATAVHGLTEEH 68 Query: 70 LKDKPSFSSIFSEFWD 85 L+ + + Sbjct: 69 LQRNGRWPAPVMFEIA 84 >gi|302533422|ref|ZP_07285764.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] gi|302442317|gb|EFL14133.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] Length = 241 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 FD ETTG+D + DRI+ V E R+ + + P G P A ++HG+TDE Sbjct: 11 AFDTETTGVDVEQDRIVSAALVVQECAGGRV--RSTRWLVNP-GVPVPPGATEVHGLTDE 67 Query: 69 FLKDKPSFSSI 79 L+ + + Sbjct: 68 HLQRNGRWPAP 78 >gi|167647058|ref|YP_001684721.1| exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31] gi|167349488|gb|ABZ72223.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31] Length = 201 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 46/158 (29%), Gaps = 5/158 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + + IG + + T ++ P + S + +HGI Sbjct: 1 MPVVAIDFET--ANEQRSSPCAIGLAWIENGRIT-EVEHHYIRPIDMRFSGWNIAVHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D +F + AHNA FD+ + + I Sbjct: 58 PADVEDADAFPDVLGRLQARIERATVI--AHNAAFDISVMRRTCELYGLPFPCFDYICTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 LN++C G+ H Sbjct: 116 QVAKNTWPGLPSAKLNAVCDFLGVEFKHHDAAQDAFAC 153 >gi|124268095|ref|YP_001022099.1| oligoribonuclease [Methylibium petroleiphilum PM1] gi|124260870|gb|ABM95864.1| putative oligoribonuclease protein [Methylibium petroleiphilum PM1] Length = 191 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD NDRIIEI V Sbjct: 21 IDLEMTGLDPLNDRIIEIAVV 41 >gi|21230975|ref|NP_636892.1| ribonuclease T [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769021|ref|YP_243783.1| ribonuclease T [Xanthomonas campestris pv. campestris str. 8004] gi|188992135|ref|YP_001904145.1| ribonuclease T [Xanthomonas campestris pv. campestris str. B100] gi|24638163|sp|Q8PAG3|RNT_XANCP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|81305015|sp|Q4UT60|RNT_XANC8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|21112595|gb|AAM40816.1| ribonuclease T [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574353|gb|AAY49763.1| ribonuclease T [Xanthomonas campestris pv. campestris str. 8004] gi|167733895|emb|CAP52101.1| Ribonuclease T [Xanthomonas campestris pv. campestris] Length = 216 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 65/185 (35%), Gaps = 13/185 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D ++EI V + + T L P G + P++L++ G Sbjct: 28 VVVDVETGGFDWNKHALLEIACVPIEMDAQGHFFPGETASAHLVPAPGLEIDPKSLEITG 87 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q A + HNA FD+ F+NA + R+ Sbjct: 88 IVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 147 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ + L + G+ + H A+ D+ + ++ K+ Sbjct: 148 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNSADAHSAVYDTEQTARLFCKIAN 207 Query: 177 GGSQI 181 Sbjct: 208 AWPGP 212 >gi|257468536|ref|ZP_05632630.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium ulcerans ATCC 49185] gi|317062795|ref|ZP_07927280.1| exonuclease [Fusobacterium ulcerans ATCC 49185] gi|313688471|gb|EFS25306.1| exonuclease [Fusobacterium ulcerans ATCC 49185] Length = 190 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 23/192 (11%) Query: 7 MRKIVFDIETTGLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-----------NGRK 54 M+ + D ET GL+ K +I++ G V + K F F+ P + Sbjct: 1 MKILFIDTETGGLNPKESALIQLSGIVRID--KKDVEEFNFFIKPFAESEVNAKALEVQG 58 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 + + L+ E + + +N KFD+ + + +R Sbjct: 59 RTEKELETEKYRPEKEVYTDFKKILDRYIDKYDKTDKFIVAGYNVKFDIDMLQSFFKRNG 118 Query: 115 KDPLDPS---------RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 + L I L + N L + C+ +GI + + Sbjct: 119 DNFLFSYISSSVLDPLPCIGMLQLCEVLPELKNNKLETWCEYFGIGFKAHDSLEDIKATK 178 Query: 166 LLSDVYIKMMVG 177 L K++ Sbjct: 179 ELIFKIAKLIRK 190 >gi|322378997|ref|ZP_08053400.1| DNA polymerase III subunit epsilon (DnaQ) [Helicobacter suis HS1] gi|321148489|gb|EFX42986.1| DNA polymerase III subunit epsilon (DnaQ) [Helicobacter suis HS1] Length = 219 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 13/178 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPEALKL 62 DIETTG +N +IEI A+ + R+F + + + P+ +L Sbjct: 36 YCFVDIETTGSKPENSSMIEIAALLYEPPKNPMHKGQIIRSFSSLI--HCLEVPPKITEL 93 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 G++ + LK+ P ++ +F F + ++AHNA FD FI+A ++ L + Sbjct: 94 TGLSTDDLKEAPPLEAVLQDFKLFIQD--HIFVAHNADFDFHFISACCVQVLDSAL-SNA 150 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + TL++AR+ PS R+ L L G+ I H A D+ V+ + Q Sbjct: 151 KLCTLNLARKCIPSPRHGLQFLNTFLGLDIPIS--HRAYADALASLRVFEHCLRVLPQ 206 >gi|260436194|ref|ZP_05790164.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8109] gi|260414068|gb|EEX07364.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8109] Length = 297 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 18/221 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHGITDE 68 + D ET+GLD D+ +E+G + + Q FL P A + Sbjct: 70 IIDTETSGLDPLQDQCLELGCILFD--VPSRSVLAQQSFLLP----VDSNAAEAINRIPA 123 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P +++ + +AHNA FD + + ++ + Sbjct: 124 AVTRRPQPWREALVWFEHLLDAADLLVAHNAAFDRQWFGLG--VVPATATPWLCTMEDIR 181 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQINFGFK 186 + SR + L YG+ + H AL D +++V+ + + + + Sbjct: 182 WPAERQLRSRPSVRDLALAYGVPVWAA--HRALSDCIYIAEVFARCDDLEQLLERGLEPR 239 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLF----TRITKEELDE 223 E++ + + + + P+ R++ E+ E Sbjct: 240 QLMRARVSFEERHLAKAAGFRWNDPIKGAWTRRLSDREVAE 280 >gi|237731882|ref|ZP_04562363.1| exodeoxyribonuclease X [Citrobacter sp. 30_2] gi|226907421|gb|EEH93339.1| exodeoxyribonuclease X [Citrobacter sp. 30_2] Length = 226 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 18/177 (10%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +++ M +I+ D ET GL I+EI +V+++D + P+ R SP+A+ Sbjct: 1 MGQEHGMLRII-DTETCGL---QGGIVEIASVDVVDGKIV-NPMSHLVRPD-RPISPQAM 54 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +H IT+ + DKP + +++ + ++AHNA FD + Sbjct: 55 AIHRITEAMVADKPWIEDVIPQYY-----GSEWYVAHNASFDRRVLPDMPGEWICT---- 105 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + S L K T + H AL D ++ + + I +M Sbjct: 106 ---MKLSRRLWPGIKYSNMALYKSRKLSVQTPAGLHHHRALYDCYITAALLIDIMQT 159 >gi|327332353|gb|EGE74089.1| putative DNA polymerase III epsilon subunit [Propionibacterium acnes HL097PA1] Length = 210 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 13/175 (7%) Query: 9 KIVFDIET----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + D ET G+ + ++ V++LD +R + P + E LHG Sbjct: 43 FVAVDFETANRMGGVSA-----CQVAMVKVLDGQIVDR-LNTLIRPPKGWDFFEFTYLHG 96 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + + P +++I + F + A AHNA FD + L Sbjct: 97 ISATDVAEAPGWTNIANAVSHFVDG--ATVYAHNAAFDSRVWRQLDEHFGTTTLPAPFFC 154 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + A+R P N + H A D+ + + ++ Sbjct: 155 -SYRTAQRLIPGLPNYKLPTVLHACAPNYQLNHHRADSDAEACALIVCELQRRAQ 208 >gi|312867475|ref|ZP_07727684.1| putative ATP-dependent DNA helicase DinG [Streptococcus parasanguinis F0405] gi|311097176|gb|EFQ55411.1| putative ATP-dependent DNA helicase DinG [Streptococcus parasanguinis F0405] Length = 817 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 10/106 (9%) Query: 1 MIRKNKMRKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M R+ + + + D+E T G ++K II++G V + D T ++++ + P+ R Sbjct: 1 MTRQKR-KYAIVDLEATSAGSNAK---IIQVGIVIVEDGVIT-QSYETDVNPHER-LDEH 54 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 +L G+TD L+ P F+ + E ++ + A ++AHN KFD Sbjct: 55 IKQLTGLTDARLRKAPEFAQVAKEIFELIED--AVFVAHNVKFDAN 98 >gi|110636436|ref|YP_676643.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC 33406] gi|110279117|gb|ABG57303.1| DNA polymerase III, epsilon subunit [Cytophaga hutchinsonii ATCC 33406] Length = 183 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 5/150 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M D ET ++ I +G + D +T + P S +++HGIT Sbjct: 1 MNFTALDFET--ANTHKTSICAVGMAIVEDGKVV-KTISKLIKPVPDFYSYWNVQIHGIT 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D P F ++ E + + +AHNA FDVG + + L Sbjct: 58 PDMTADAPYFIDVWQELKQYI--DYSTLVAHNAAFDVGALRSILTTHEVSFPKTDYFCSC 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156 + + L+++C+ + ++H Sbjct: 116 SVSRKVFKEIENHKLSTVCRHIDVPLNHHE 145 >gi|308446414|ref|XP_003087176.1| hypothetical protein CRE_18392 [Caenorhabditis remanei] gi|308260385|gb|EFP04338.1| hypothetical protein CRE_18392 [Caenorhabditis remanei] Length = 137 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 5/114 (4%) Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + DTL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M Q Sbjct: 20 CEVTDTLAMAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILSDVYLAMTG--GQ 77 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++F + ++ T + + EEL+ H+ ++ + Sbjct: 78 VSFDMDALSAHTDQAQRNTTRKKIEINAP---IILPSDEELEAHENWVKQFQEK 128 >gi|153209510|ref|ZP_01947415.1| exonuclease [Coxiella burnetii 'MSU Goat Q177'] gi|212218768|ref|YP_002305555.1| exodeoxyribonuclease I [Coxiella burnetii CbuK_Q154] gi|120575335|gb|EAX31959.1| exonuclease [Coxiella burnetii 'MSU Goat Q177'] gi|212013030|gb|ACJ20410.1| exodeoxyribonuclease I [Coxiella burnetii CbuK_Q154] Length = 458 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 3/128 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEA 59 + ++ + +D+ETTGL+ D+II+ A+ + ++ + P+ + Sbjct: 1 MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILIRLNPDVIPSPEAM 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + H + + + + E N + +N N P Sbjct: 61 II-HRFSIDQMLSGKAEIEAIREIHQSVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPPY 119 Query: 120 PSRIIDTL 127 + + Sbjct: 120 THQYDNFC 127 >gi|18466779|ref|NP_569586.1| hypothetical protein HCM2.0114c [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16506095|emb|CAD09981.1| hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] Length = 185 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 66/188 (35%), Gaps = 9/188 (4%) Query: 7 MRKIV--FDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVF---LCPNGRKNSPEAL 60 M IV DIE+TGLD + +IIEI +T + P R P+A Sbjct: 1 MTTIVGGVDIESTGLDFTSGHKIIEIAITRYE--LETQKHIDSLEMRFNP-RRSIDPKAQ 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGI+ E L +P + + + +A + FD+ FI E D Sbjct: 58 AVHGISLEDLATEPLLADHAGKIAAYMGACSALVAHNGEAFDLPFIRHEFGSYGVKLPDI 117 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + L R L L G T H AL D+ L+ + K Sbjct: 118 PLVDSMLDGLWATEDGKRPRLEELAFSLGFTYDREKAHSALYDTDLMMQCFFKAREKYGF 177 Query: 181 INFGFKTN 188 F++ Sbjct: 178 FKLPFESA 185 >gi|167554101|ref|ZP_02347842.1| YacC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321613|gb|EDZ09452.1| YacC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 287 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 60/188 (31%), Gaps = 13/188 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGLD+ + +EIG V R F+ L P P A +HGI+DE Sbjct: 106 VFLDTETTGLDA-GAQALEIGLVNARG----ERIFETRLKPTVA-IDPAAAAVHGISDED 159 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L PS+ I + + NA+FD + N + ++ Sbjct: 160 LVRAPSWPDIAQQLQHHI--GRRPLVIFNAEFDTRILKQTAAAHNDPASWLDSLTVYCAM 217 Query: 130 ARRKHPSSRNDLNSLCKRYGIT-----ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + G H A+ D+ + + V + ++ Sbjct: 218 WLAAGYYGPTNRYGTISLSGAVSQAGLSWIGEAHSAVTDAVMTAQVVNNIAGYWHELQCE 277 Query: 185 FKTNEDRF 192 + Sbjct: 278 MNDDAGSE 285 >gi|262394233|ref|YP_003286087.1| DNA polymerase III subunit alpha [Vibrio sp. Ex25] gi|262337827|gb|ACY51622.1| DNA polymerase III alpha subunit (gram-positive type) [Vibrio sp. Ex25] Length = 205 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 55/189 (29%), Gaps = 21/189 (11%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + I+ D ETTGL + I+E A+ + P +A Sbjct: 1 MKKLPTENAIIIDTETTGLGAD-AEIVEFTAICANSGEVIVDE---LVKPTC-SIPADAT 55 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI----------------AHNAKFDVG 104 +HGIT+E +KD P F +FS + I NA + Sbjct: 56 AIHGITNEDVKDAPDFHLMFSNRFLPLLNGRPIIIYNSDFDTRLIIQSLDKHCNAAYVQS 115 Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 + + L + C + + +S H AL D Sbjct: 116 VHDLFFKFCVPQCAMLWYAEFYGVWNEYHEDYKWQSLTNACAQQHVDVSDLIAHRALADC 175 Query: 165 HLLSDVYIK 173 + + Sbjct: 176 EMTRRLIHA 184 >gi|239945175|ref|ZP_04697112.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] gi|239991636|ref|ZP_04712300.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 11379] gi|291448639|ref|ZP_06588029.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998] gi|291351586|gb|EFE78490.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998] Length = 237 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 18/40 (45%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 FD+ETTG D ++DRI+ V L L P Sbjct: 11 FDLETTGTDVESDRIVTAALVRLDPDGTVAEQRTWLLDPG 50 >gi|196248455|ref|ZP_03147156.1| conserved hypothetical protein [Geobacillus sp. G11MC16] gi|196212180|gb|EDY06938.1| conserved hypothetical protein [Geobacillus sp. G11MC16] Length = 112 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 ++ D+ETTG + D I+ + A + ++ T T+ + N +N Sbjct: 62 FVIIDMETTGFSPQQGDEILAMAAAKTVNGLVTG-TYMTLVKRNRFRN 108 >gi|300864441|ref|ZP_07109312.1| Exonuclease RNase T and DNA polymerase III [Oscillatoria sp. PCC 6506] gi|300337585|emb|CBN54460.1| Exonuclease RNase T and DNA polymerase III [Oscillatoria sp. PCC 6506] Length = 192 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 59/180 (32%), Gaps = 7/180 (3%) Query: 9 KIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKN-SPEALK 61 +V D+E T ++ ++ IIEIGAV + + T FQ F+ P + Sbjct: 13 YLVLDLEATCCDRETINREHMEIIEIGAVMVEPKNLTIVDEFQTFIKPVRHPILTEFCKS 72 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L I+ + + P++ + ++ + + +D + Sbjct: 73 LTSISQKQVDLAPTYPEAIALLKNWLSGYSNAVFGSWGDYDRKQFQQDSNFHKVPFPIAY 132 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++ + + + + + + H + D+ ++ + ++ Sbjct: 133 PHVNLKQLFTEQQGLRKRPGMAKALQLVGLPLEGTHHRGIDDARNIAKLLPYILGEKQLP 192 >gi|320011855|gb|ADW06705.1| Exonuclease RNase T and DNA polymerase III [Streptomyces flavogriseus ATCC 33331] Length = 241 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ V R + + P G P A ++HG+TD+ L Sbjct: 11 AFDTETTGVDVEEDRIVSAALVVQDAAGGRLRVTRWLVNP-GIPVPPGATEIHGLTDDHL 69 Query: 71 KDKPSFSSI 79 + + + Sbjct: 70 QRNGRWPAP 78 >gi|293606916|ref|ZP_06689263.1| DNA polymerase III [Achromobacter piechaudii ATCC 43553] gi|292814648|gb|EFF73782.1| DNA polymerase III [Achromobacter piechaudii ATCC 43553] Length = 208 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 19/41 (46%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 IV D+ETTGL + I+E AV + R + + Sbjct: 39 FIVADLETTGLSTATCEILEFAAVRVETCGTLAREYTQVVR 79 >gi|330001239|ref|ZP_08303928.1| exodeoxyribonuclease 10 [Klebsiella sp. MS 92-3] gi|328537753|gb|EGF63955.1| exodeoxyribonuclease 10 [Klebsiella sp. MS 92-3] Length = 219 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 62/162 (38%), Gaps = 17/162 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++D T + P+ R SP+A+ +H IT+E + Sbjct: 4 VIDTETCGL---QGGIVEIASVDIVDGQIT-NPMSHLVRPD-RPISPQAMAIHRITEEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I + + ++AHNA FD + + Sbjct: 59 ADKPWIEEIIPHYH-----GSPWYVAHNASFDRRVLPEMHGEGICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S L K T H AL D ++ + + + Sbjct: 107 WPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYITAALLL 148 >gi|299532537|ref|ZP_07045927.1| oligoribonuclease [Comamonas testosteroni S44] gi|298719484|gb|EFI60451.1| oligoribonuclease [Comamonas testosteroni S44] Length = 202 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D E TGL+ DRIIEI V Sbjct: 32 LDCEMTGLNPDRDRIIEIAVV 52 >gi|221068763|ref|ZP_03544868.1| Exonuclease RNase T and DNA polymerase III [Comamonas testosteroni KF-1] gi|220713786|gb|EED69154.1| Exonuclease RNase T and DNA polymerase III [Comamonas testosteroni KF-1] Length = 202 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D E TGL+ DRIIEI V Sbjct: 32 LDCEMTGLNPDRDRIIEIAVV 52 >gi|329116348|ref|ZP_08245065.1| exonuclease DnaQ family/helicase DinG family [Streptococcus parauberis NCFD 2020] gi|326906753|gb|EGE53667.1| exonuclease DnaQ family/helicase DinG family [Streptococcus parauberis NCFD 2020] Length = 834 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 12/183 (6%) Query: 1 MIRKNKMRKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M ++ + V D+E T G +K II++G V + T T+Q + P+ S Sbjct: 15 MTKEKNPKYAVIDLEATSAGTAAK---IIQVGIVIVEGGKIT-NTYQTDVNPH-EDLSDH 69 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 L GI+D+ L P FS I +D + ++AHN KFD + + Sbjct: 70 IKLLTGISDQQLASAPEFSQIAGTIFDLIKD--CIFVAHNVKFDANLLA--EALFFEGFE 125 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + +DT+ +A+ P + + + H A+ D+ +++ + + Sbjct: 126 LRTPRVDTVELAQVFFPHLEKYNLTYLSTE-LNLELSDAHTAIADAMATANLLLVLQDKI 184 Query: 179 SQI 181 + Sbjct: 185 KSL 187 >gi|223040436|ref|ZP_03610710.1| mature parasite-infected erythrocyte surface antigen [Campylobacter rectus RM3267] gi|222878286|gb|EEF13393.1| mature parasite-infected erythrocyte surface antigen [Campylobacter rectus RM3267] Length = 289 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 6/96 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIET+G + +IIEIGA++L + + F+ F+ + +L GIT E L Sbjct: 75 VVDIETSGG-INSGQIIEIGALKLQNGEIIGK-FETFV--HAPYVPENISELTGITAEHL 130 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 K+ P+ + + +F + ++AHN +FD GFI Sbjct: 131 KNAPNLAFVMEKF--KVFLGQSVFVAHNVRFDYGFI 164 >gi|226943525|ref|YP_002798598.1| ribonuclease T [Azotobacter vinelandii DJ] gi|226718452|gb|ACO77623.1| ribonuclease T [Azotobacter vinelandii DJ] Length = 202 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVF-LCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI A+ + F + P G AL+ G Sbjct: 11 VVVDVETGGFNSATDALLEIAAITIGMDEQGLLFPEHSHFFRVEPFEGANIEAAALEFTG 70 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HN+ FD+ F+NA + R + Sbjct: 71 IKLDHPLRMAVSEEHALQEIFRGVRKAVKSHGCKRAILVGHNSSFDLAFLNAAVARCDIK 130 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI R H A D+ ++++ ++ Sbjct: 131 RNPFHPFSSFDTATLAGLAYGQTVLAKACQSAGIEFDGREAHSARYDTEKTAELFCGIVN 190 Query: 177 GGSQIN 182 ++ Sbjct: 191 RWKEMG 196 >gi|256827957|ref|YP_003156685.1| Exonuclease RNase T and DNA polymerase III [Desulfomicrobium baculatum DSM 4028] gi|256577133|gb|ACU88269.1| Exonuclease RNase T and DNA polymerase III [Desulfomicrobium baculatum DSM 4028] Length = 177 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 57/156 (36%), Gaps = 5/156 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET DS D +G ++ +R + P + SP + +HGI Sbjct: 7 YVAIDFET--ADSCRDSACAVGLTKVQGGEIVDR-LYGLIRPPRSRFSPFCVNVHGIHWS 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P+F + E F + AHNA FD + A + T+ Sbjct: 64 DVKDAPAFREFWIENAGFLEGADF-LAAHNASFDRSVLGACCTMAGLPAP-SLPFVCTVE 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 +AR + L +C+ G+ ++H Sbjct: 122 LARNQWNLRPTKLPDVCRHLGLDLNHHHAGSDAEAC 157 >gi|153834926|ref|ZP_01987593.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01] gi|156972536|ref|YP_001443443.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116] gi|148868652|gb|EDL67736.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01] gi|156524130|gb|ABU69216.1| hypothetical protein VIBHAR_00168 [Vibrio harveyi ATCC BAA-1116] Length = 210 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66 + D ETT LD ++ I A +++ + T++ F+V L P + + Sbjct: 30 FVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLRAPQSLDSGSVKIHHIRHQ 89 >gi|302554973|ref|ZP_07307315.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] gi|302472591|gb|EFL35684.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] Length = 238 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 FD+ETTG D + RI+ +E+ + R + P G +A+ +HGI Sbjct: 11 FDLETTGTDPREARIVTGAVIEVRGGEPSGRR-EWLADP-GVPIPEDAVAVHGI 62 >gi|311896062|dbj|BAJ28470.1| putative exonuclease [Kitasatospora setae KM-6054] Length = 617 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 9/175 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ET+GL ++ DR++ I + D ++T + L P P + +HG+T E L Sbjct: 22 VDVETSGLVARRDRVLSIAVLTFAPDGTQTGE-YTTLLDPG---CDPGPVHVHGLTAERL 77 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P+F + + +AHNA+FD F+ E R R+ Sbjct: 78 RGAPAFEQVADRIGALLDG--RVMVAHNAQFDYDFLAHEFARARLHLPVARRLCTLALNR 135 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 R + P + L SL YG+ + H AL D+ +L+ ++ + +++ Sbjct: 136 RVEPPVAGLSLASLAAYYGVPQTRA--HDALDDTRVLAGIFRSSLAEAARLGVPL 188 >gi|283954255|ref|ZP_06371779.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 414] gi|283794273|gb|EFC33018.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 414] Length = 253 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 6/122 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIE+TG I+EIGAV++ + + R FQ F+ ++ +L GIT E + Sbjct: 74 IVDIESTGG-VSKGEILEIGAVKIQNSKEIGR-FQSFIK--VKEIPENITELTGITYEMV 129 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ P + + S+F +++ ++AHN +FD FI+ L L RI Sbjct: 130 ENAPILAKVLSDF--RLFLKDSIFVAHNVRFDYSFISKALNECGFGILLNRRICTIEFAQ 187 Query: 131 RR 132 Sbjct: 188 CC 189 >gi|255658850|ref|ZP_05404259.1| putative exonuclease [Mitsuokella multacida DSM 20544] gi|260849253|gb|EEX69260.1| putative exonuclease [Mitsuokella multacida DSM 20544] Length = 219 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 21/221 (9%) Query: 7 MRKIVFDIETTGLDSK-----------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M+ +V D+E ++ N+ +IEIGAV L + + FQ ++ P Sbjct: 1 MKHVVVDLE---MNPVSREFREVRRKLNEEVIEIGAVRLDENFQQEAEFQCYVKPEYGPI 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA--KFDVGFINAELQRI 113 L GIT + DK ++++ F +F D+ E+ + + + + Sbjct: 58 KKHITSLTGITQAMVADKKTYAACFQDFVDWVGEEETKIYSWSMSDIKQLRSECRYKLPD 117 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R +D + + ++H AL D+ S + Sbjct: 118 FDIEWLNERWVDLQQEFDDRLGLHNSLALKHALGAMDHKFEGTQHTALADAINTSAILTL 177 Query: 174 MMVGGS-----QINFGFKTNEDRFFKEEKKTVPNISLLKRD 209 M + +D P ++ L++D Sbjct: 178 MQDDAKFKETMKPVLEILQPKDDLSSSIGDLCPELAKLQKD 218 >gi|154493796|ref|ZP_02033116.1| hypothetical protein PARMER_03139 [Parabacteroides merdae ATCC 43184] gi|154086409|gb|EDN85454.1| hypothetical protein PARMER_03139 [Parabacteroides merdae ATCC 43184] Length = 174 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 9/171 (5%) Query: 8 RKIVFDIE-TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R D E G K I IG + D + + + + P + +HGIT Sbjct: 3 RFAAIDFEIANG---KRSSICSIGVAIIEDNKVIDSVY-MLVRPYPNFYTRFTTAIHGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D P F ++ + +AHN+ FD G + A + + Sbjct: 59 MQDTIDSPDFEEAWTRIAGRLQD--IPLVAHNSSFDEGCLRAAHEAYDLAYPKYQFYCTC 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R + + L ++ G +++ H A+ D++ + + MM Sbjct: 117 RLSRRMYPFLANHQLQTVAAHCGYDLTY--HHHAMADAYACAHIAATMMRE 165 >gi|29833361|ref|NP_827995.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis MA-4680] gi|29610484|dbj|BAC74530.1| putative DNA polymerase III epsilon subunit [Streptomyces avermitilis MA-4680] Length = 241 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 5/116 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ V R + + P G A +HG+TDE L Sbjct: 11 AFDTETTGVDVETDRIVSAAVVVQDAPGARPRVSRWLVNP-GVPVPAGATAVHGLTDEHL 69 Query: 71 KDKPSFSSIFSEFWDF----FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + + S + + NA FD+ ++ EL+R LD Sbjct: 70 QRNGRWPSPVMDEIARELGEQATAGRPLVVMNAPFDLTLLDRELRRHRASCLDHWF 125 >gi|297181362|gb|ADI17552.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [uncultured alpha proteobacterium HF0130_06E21] Length = 309 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 6/161 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+ETTGL + D ++++ + +T R V+ + + EAL+ Sbjct: 48 RALVVDVETTGLSQETDDVMQLAMLPFDYEVETGRILTVY-----KDEAFEALREPAAPI 102 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + + + NA + + + + D Sbjct: 103 SEEASIITGITADMVAGTTIDAEAVAGMVENADLVIAHNAKFDRPMAEKNWDCFVNKPWA 162 Query: 128 SIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDSHLL 167 + + G+ H AL D Sbjct: 163 CTLDGVNWLRQGYSAGKLDYLGMQFGWFYDGHQALADCEAC 203 >gi|210620723|ref|ZP_03292209.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275] gi|210155224|gb|EEA86230.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275] Length = 179 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 33/179 (18%) Query: 9 KIVFDIETTGLDS--------------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 IV D+ETTGL+ +N +I+ R++ F+ P ++ Sbjct: 13 FIVVDLETTGLNPFEGNEIIEIGITEIRNGKIV--------------RSYSRFVKPE-QE 57 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P +L GI++E + ++ + + F F AHNAKFD+ F+N L ++ Sbjct: 58 IPPFITELTGISNEMVANEDTIEQVLPRFRKFIGSNTII--AHNAKFDIKFLNYYLNKLG 115 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + L + L + C+ YGI +++ H A D+ +++++K Sbjct: 116 LEEIKDYICTLELLKKVSSYGGKNKKLATACEYYGIE--NKNAHRASSDTQATAELFLK 172 >gi|239631926|ref|ZP_04674957.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526391|gb|EEQ65392.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 172 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 48/132 (36%), Gaps = 5/132 (3%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+ ++ D E +S ++R I+I AV + D F F+ + + ++ + Sbjct: 1 MKEYVIMDTE---FNSTSNRAIQISAVRIRDGLHIADQFNRFIPSPDKFDQLHIIRTSNM 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 PS ++ + + + + D G I ++ + + ID Sbjct: 58 RYSDYLALPSLQQTVRDYVAWMRTTTDI-VGWSIEGDAGRIRETFKQGSHGIPKNWKFID 116 Query: 126 TLSIARRKHPSS 137 I +++ + Sbjct: 117 IADIVGKQYNFN 128 >gi|254383630|ref|ZP_04998980.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] gi|194342525|gb|EDX23491.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] Length = 241 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 FD ETTG+D + DRI+ + E R+ + + P G P A ++HG+TD+ Sbjct: 11 AFDTETTGVDVEQDRIVSAALIVQECAGGRV--RSTRWLVNP-GIPVPPGATEVHGLTDD 67 Query: 69 FLKDKPSFSSI 79 L+ + + Sbjct: 68 HLQRNGRWPAP 78 >gi|157961523|ref|YP_001501557.1| exonuclease RNase T and DNA polymerase III [Shewanella pealeana ATCC 700345] gi|157846523|gb|ABV87022.1| Exonuclease RNase T and DNA polymerase III [Shewanella pealeana ATCC 700345] Length = 228 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 52/164 (31%), Gaps = 1/164 (0%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+E TGL+S+ D+I+ IG + + + + + + + +G + Sbjct: 47 AVDLEMTGLNSQFDQILSIGLIPIRNGLLQVSHSKHLLVSIDGSVGDSAVIHGIVDNQLT 106 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 P + + + A + F I + + + ++ + Sbjct: 107 QAVSPKLAMAWFLEQTQGHVLVAHHAPLDLCFLKAEIQRCYGQTIQFVAIDTMAVEKRRL 166 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + L R + + H A +D+ ++ + Sbjct: 167 LMQIDVIKEGSLRLDACRQRYGLPVYAAHNAAIDALACGELLLA 210 >gi|303326602|ref|ZP_07357044.1| exonuclease [Desulfovibrio sp. 3_1_syn3] gi|302862590|gb|EFL85522.1| exonuclease [Desulfovibrio sp. 3_1_syn3] Length = 175 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 10/169 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET+G +G + D T F L P + ++HG+T Sbjct: 9 VAIDFETSG--YAAHSACAVGLARIEDGRVT-DCFYRLLRPPSARV--LFTEIHGLTWPM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+D PSF+ + E + +AHNA FD + A + + + TL Sbjct: 64 LRDAPSFAQAWPEAGAILCGAHF-LLAHNASFDRRVLLACCRAAGLPAP-EAPFLCTLKG 121 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +RR P LN +C+ +G H A D+ ++VY+++ G Sbjct: 122 SRRSLPLPSKKLNLVCEYFG---IALKHHNAASDAQACAEVYLRLRGLG 167 >gi|332878163|ref|ZP_08445892.1| DNA polymerase III, alpha subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683901|gb|EGJ56769.1| DNA polymerase III, alpha subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1486 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 33/248 (13%), Positives = 73/248 (29%), Gaps = 33/248 (13%) Query: 9 KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL +D R ++I + + P+G + Sbjct: 2 YLIFDTETTGLPRNYNAPISDSNNWPRAVQIAWQLHDQWGALIEHQDFLIAPDGFDIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A K+HGI+ + + + ++ + + N FD+ + AE R + Sbjct: 62 AEKVHGISTLLAEKQGVPIAEVFAAFNEALSKAQYVVGQNIGFDINIMGAEFYRYGVESP 121 Query: 119 ---------DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + I + + + + + H A D + Sbjct: 122 LDKLPVIDTCTEATANLCKIEGGRGGKYKFPSLTELHSFLFGVPFAEAHNATADVEATAR 181 Query: 170 VYIKMMVGG---------SQINFGFKTNEDRFFKEEKKTVPNIS-----LLKRDKPLFTR 215 + +++ G + F+ + N+ L + Sbjct: 182 CFFELIRRGEGFKEGTFSREYIENFQAHHSSPIGLIGLKHVNLKEASEALRSKGSTPEIT 241 Query: 216 ITKEELDE 223 ++EE+ Sbjct: 242 ASEEEIAL 249 >gi|220918921|ref|YP_002494225.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter dehalogenans 2CP-1] gi|219956775|gb|ACL67159.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter dehalogenans 2CP-1] Length = 200 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEF 69 D+ET GLD++ D I+ +G + + + + ++ + P G+ SP +++ H + Sbjct: 16 LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEHGKAVSPRSVQAHQLVAGD 75 Query: 70 LKDKPS 75 + P Sbjct: 76 TRGAPP 81 >gi|189463165|ref|ZP_03011950.1| hypothetical protein BACCOP_03876 [Bacteroides coprocola DSM 17136] gi|189430144|gb|EDU99128.1| hypothetical protein BACCOP_03876 [Bacteroides coprocola DSM 17136] Length = 163 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 64/169 (37%), Gaps = 11/169 (6%) Query: 9 KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 D ET + R + +G V + D +R F + P + ++HG+T Sbjct: 4 FAAIDFET----ANQCRSSVCSVGVVIVHDGMIVDR-FYSLIQPTPNYYTHWTTEIHGLT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + P F ++ + +AHN+ FD G + + + + + Sbjct: 59 HNDTDNAPIFPEVWKQINPLIKG--LPLVAHNSPFDEGCLRSVFKTYEMEYPEYPFYCTL 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + + L+++ + + + H A+ D+ + + +K++ Sbjct: 117 KASRKLQPELPNHRLDTVAETCN--FNLTNHHNAIADAEACAAIALKLL 163 >gi|23013261|ref|ZP_00053177.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum magnetotacticum MS-1] Length = 302 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 16/25 (64%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL 35 V D+ETTGLD D IIE+G V Sbjct: 44 VVDVETTGLDLVKDEIIELGMVLFE 68 >gi|328881184|emb|CCA54423.1| putative DNA polymerase III [Streptomyces venezuelae ATCC 10712] Length = 242 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ V R + + P G A +HG+TD+ L Sbjct: 12 AFDTETTGVDVEEDRIVSAALVVQDTVGARPRVTRWLVNP-GIPVPEGATAVHGLTDDHL 70 Query: 71 KDKPSFSSIFS 81 + + + Sbjct: 71 QRYGRWPAPVM 81 >gi|325921138|ref|ZP_08183009.1| RNAse T [Xanthomonas gardneri ATCC 19865] gi|325548410|gb|EGD19393.1| RNAse T [Xanthomonas gardneri ATCC 19865] Length = 213 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 13/185 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D ++EI V + T L P G + P++L++ G Sbjct: 28 VVVDVETGGFDWNKHALLEIACVPIEMDAEGRFFPGDTASAHLVPAPGLEIDPKSLEITG 87 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q A + HNA FD+ F+NA + R+ Sbjct: 88 IVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 147 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ + L + G+ + H A+ D+ + ++ K+ Sbjct: 148 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCKIAN 207 Query: 177 GGSQI 181 Sbjct: 208 AWPGP 212 >gi|294634445|ref|ZP_06712981.1| oligoribonuclease [Edwardsiella tarda ATCC 23685] gi|291092155|gb|EFE24716.1| oligoribonuclease [Edwardsiella tarda ATCC 23685] Length = 181 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + ++ R I D+E TGLD + DRIIEI Sbjct: 1 MSASETRLIWIDLEMTGLDPERDRIIEIA 29 >gi|197124141|ref|YP_002136092.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K] gi|196173990|gb|ACG74963.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K] Length = 200 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEF 69 D+ET GLD++ D I+ +G + + + + ++ + P G+ SP +++ H + Sbjct: 16 LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEQGKAVSPRSVQAHQLVAGD 75 Query: 70 LKDKP 74 + P Sbjct: 76 TRGAP 80 >gi|86160112|ref|YP_466897.1| exonuclease [Anaeromyxobacter dehalogenans 2CP-C] gi|85776623|gb|ABC83460.1| Exonuclease [Anaeromyxobacter dehalogenans 2CP-C] Length = 200 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEF 69 D+ET GLD++ D I+ +G + + + + ++ + P G+ SP +++ H + Sbjct: 16 LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEQGKAVSPRSVQAHQLVAGD 75 Query: 70 LKDKP 74 + P Sbjct: 76 TRGAP 80 >gi|297559294|ref|YP_003678268.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843742|gb|ADH65762.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 243 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD E+TGLD NDRI+ + ++T + P G EA +H IT E Sbjct: 20 AFDTESTGLDLANDRIVTAALWRIDPAARTKEVTTWLIDP-GIDIPQEATDIHHITTEHA 78 Query: 71 KDK 73 ++ Sbjct: 79 REH 81 >gi|29654660|ref|NP_820352.1| exonuclease [Coxiella burnetii RSA 493] gi|161831411|ref|YP_001597205.1| exonuclease [Coxiella burnetii RSA 331] gi|165924153|ref|ZP_02219985.1| exonuclease [Coxiella burnetii RSA 334] gi|29541928|gb|AAO90866.1| exodeoxyribonuclease I [Coxiella burnetii RSA 493] gi|161763278|gb|ABX78920.1| exonuclease [Coxiella burnetii RSA 331] gi|165916402|gb|EDR35006.1| exonuclease [Coxiella burnetii RSA 334] Length = 458 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 3/128 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEA 59 + ++ + +D+ETTGL+ D+II+ A+ + ++ + P+ + Sbjct: 1 MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILIRLNPDVIPSPEAM 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + H + + + + E N + +N N P Sbjct: 61 II-HRFSIDQMLSGKAEIEAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPPY 119 Query: 120 PSRIIDTL 127 + + Sbjct: 120 THQYDNFC 127 >gi|260912289|ref|ZP_05918840.1| exonuclease [Prevotella sp. oral taxon 472 str. F0295] gi|260633590|gb|EEX51729.1| exonuclease [Prevotella sp. oral taxon 472 str. F0295] Length = 165 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 6/170 (3%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+ D ET + + + + +G V + + + + P + +HG+ Sbjct: 1 MKDFAAIDFET--ANFRRESVCSVGLVLVEEGKVVGSYYH-LIQPTPNYFEERCVTVHGL 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T +P+F +++E +N +AHN FD + A + + D Sbjct: 58 TTADTNGQPTFPDVWAEIAPLI--RNKPLVAHNKAFDESCLKAAFAAYDMEYPDYPFYCT 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L+ + + D H AL D+ + + +K++ Sbjct: 116 LLTARHKLKEAGLADFKLPTVASHCGYELDKHHHALADAEACAAIALKIL 165 >gi|311108015|ref|YP_003980868.1| exonuclease family protein [Achromobacter xylosoxidans A8] gi|310762704|gb|ADP18153.1| exonuclease family protein [Achromobacter xylosoxidans A8] Length = 207 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 IV D+ETTGL + I+E AV + + R + + Sbjct: 39 FIVADLETTGLSTATCEILEFAAVRVGEAGALEREYTQVVR 79 >gi|307730586|ref|YP_003907810.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. CCGE1003] gi|307585121|gb|ADN58519.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. CCGE1003] Length = 203 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 19/29 (65%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 ++ M + D+E TGL+ +DRIIEI V Sbjct: 15 RSDMNLVWLDMEMTGLNPDSDRIIEIAVV 43 >gi|255034947|ref|YP_003085568.1| Exonuclease RNase T and DNA polymerase III [Dyadobacter fermentans DSM 18053] gi|254947703|gb|ACT92403.1| Exonuclease RNase T and DNA polymerase III [Dyadobacter fermentans DSM 18053] Length = 195 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 71/194 (36%), Gaps = 17/194 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGI 65 M +V DIE TG + + II+IGA D ++ T+ + P + S ++ ++HG+ Sbjct: 1 MSFLVLDIEMTGPEPGWNEIIQIGAEFFDDNWRSLGTYLQNVYPENEEAFSVKSEEVHGL 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFN--------EQNAEWIAHNAKFDVGFINAELQRINKDP 117 + + L+D P + EF + N + D+ F+ + Sbjct: 61 SLDDLEDAPMIYDVLPEFEKWIKKLNAGKPSLANVVICGQSVINDINFLRFAYRNEKMKW 120 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCK--------RYGITISHRSKHGALLDSHLLSD 169 ++ +D +++ + + + Y H AL D+ L + Sbjct: 121 GFSNKQLDLHTVSYLFFQILEKNGKQVPRSLSLGSVASYFGFEREEETHNALEDARLTAK 180 Query: 170 VYIKMMVGGSQINF 183 + + Q+ Sbjct: 181 CFKEFFKLIDQVKL 194 >gi|150005552|ref|YP_001300296.1| putative exonuclease/DNA polymerase III epsilon c [Bacteroides vulgatus ATCC 8482] gi|254884534|ref|ZP_05257244.1| exonuclease [Bacteroides sp. 4_3_47FAA] gi|294778642|ref|ZP_06744064.1| exonuclease [Bacteroides vulgatus PC510] gi|319640774|ref|ZP_07995487.1| exonuclease/DNA polymerase III epsilon c [Bacteroides sp. 3_1_40A] gi|149933976|gb|ABR40674.1| putative exonuclease/DNA polymerase III epsilon c [Bacteroides vulgatus ATCC 8482] gi|254837327|gb|EET17636.1| exonuclease [Bacteroides sp. 4_3_47FAA] gi|294447591|gb|EFG16169.1| exonuclease [Bacteroides vulgatus PC510] gi|317387586|gb|EFV68452.1| exonuclease/DNA polymerase III epsilon c [Bacteroides sp. 3_1_40A] Length = 162 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 6/159 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 D ET +++ I +G V + + +R F + P ++HG+T Sbjct: 3 NFAAIDFET--ANNERTSICSVGVVIVRNGEIADR-FYSLVHPEPDYYLYWNTRIHGLTQ 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E P FS ++ + +AHN FD G + A + D D T Sbjct: 60 EDTAHAPVFSEVWKQVAPKIEG--LPLVAHNKAFDEGCLKAVFRTYCMDYPDYDFYC-TY 116 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 +R+ + L+++ +G + + A ++ Sbjct: 117 QASRKLKGLRNHQLHTVAGFFGFELENHHHALADAEACA 155 >gi|312131819|ref|YP_003999159.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella byssophila DSM 17132] gi|311908365|gb|ADQ18806.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella byssophila DSM 17132] Length = 180 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 8/167 (4%) Query: 7 MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M + D ET T ++ D +G V + + + P + + K+HGI Sbjct: 1 MEFVAIDFETAT---AQKDSACAVGVVWVKGLDII-EEYYTLIQPPNNEYNFYNTKVHGI 56 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ P+F I+ + + DV + ++ L+ + D Sbjct: 57 RARDTENAPTFKDIYPKLKSILQGKKIVAHNSAFDKDVLYYTMLSAGLDYSELELPKKWD 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 RK + +L + K YG + H AL D+ + +Y+ Sbjct: 117 CTVKIYRKKGLPKVNLAACSKLYG---IDLTHHNALSDAMACAKLYM 160 >gi|269137702|ref|YP_003294402.1| hypothetical protein ETAE_0344 [Edwardsiella tarda EIB202] gi|267983362|gb|ACY83191.1| conserved hypothetical protein [Edwardsiella tarda EIB202] gi|304557757|gb|ADM40421.1| Oligoribonuclease [Edwardsiella tarda FL6-60] Length = 181 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + ++ R I D+E TGLD + DRIIEI Sbjct: 1 MSASETRLIWIDLEMTGLDPQRDRIIEIA 29 >gi|269962464|ref|ZP_06176813.1| putative DNA polymerase III, epsilon subunit [Vibrio harveyi 1DA3] gi|269832760|gb|EEZ86870.1| putative DNA polymerase III, epsilon subunit [Vibrio harveyi 1DA3] Length = 210 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66 + D ETT LD ++ I A +++ + T++ F+V L P + + Sbjct: 30 FVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLRAPQSLDSGSVKIHHIRHQ 89 >gi|237785812|ref|YP_002906517.1| putative DNA polymerase III subunit epsilon [Corynebacterium kroppenstedtii DSM 44385] gi|237758724|gb|ACR17974.1| putative DNA polymerase III epsilon subunit [Corynebacterium kroppenstedtii DSM 44385] Length = 256 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHG 64 D+ETTGLD+ DR++ +G V + + + S Sbjct: 66 AVDVETTGLDADRDRLLSVGMVAINGRAIPLATADHWLVRYHEGDVSVGQSATIH 120 >gi|221369901|ref|YP_002520997.1| Exonuclease [Rhodobacter sphaeroides KD131] gi|221162953|gb|ACM03924.1| Exonuclease [Rhodobacter sphaeroides KD131] Length = 293 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 11/124 (8%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPE 58 MI + R I D+ET D+ + I +IG V + T F + P R P Sbjct: 4 MIPEGDFRFIALDVETACSDAGS--ICQIGLACVFPDNRIHT---FSTLVNPGTR-FDPF 57 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 ++LHGI + + F + + + + + ++ FD +NA + ++P Sbjct: 58 NVRLHGIGPDHVSGALRFDELLDHLFPLLSRHH---LVQHSNFDKQALNAACRSCGREPP 114 Query: 119 DPSR 122 D Sbjct: 115 DFRW 118 >gi|113969858|ref|YP_733651.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4] gi|113884542|gb|ABI38594.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4] Length = 228 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNG 52 D+E TGLD ND+I+ IG V + + Q + G Sbjct: 46 DLEMTGLDPLNDQILSIGLVPIENGTIPLGSAQQKLVQIQG 86 >gi|114047088|ref|YP_737638.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7] gi|113888530|gb|ABI42581.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7] Length = 228 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNG 52 D+E TGLD ND+I+ IG V + + Q + G Sbjct: 46 DLEMTGLDPLNDQILSIGLVPIENGTIPLGSAQQKLVQIQG 86 >gi|167771957|ref|ZP_02444010.1| hypothetical protein ANACOL_03330 [Anaerotruncus colihominis DSM 17241] gi|167665755|gb|EDS09885.1| hypothetical protein ANACOL_03330 [Anaerotruncus colihominis DSM 17241] Length = 270 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 5/170 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQVFLC-PNGRKNSPEALKLHG 64 I+FD ET+GLD D+IIE+ A+ + + F+ P G++ + + ++L G Sbjct: 39 ILFDTETSGLDFDKDQIIELAALRIEQTAAKGLRIAGQMDQFIRLPEGQQLTEKIVELTG 98 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITD L+ + + + + A + + L P Sbjct: 99 ITDRILEAEGVAPHKAATAFAKLINAGDGPVLLVAHNAQFDLLFVRSLLKGVKLAPRLEF 158 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + L Y + ++ H A+ D + +V M Sbjct: 159 LDTLTVYKDRRPYPHKLADAIIAYDLDGKVKNSHRAIDDVTAMLEVLRAM 208 >gi|332882889|ref|ZP_08450497.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679166|gb|EGJ52155.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 182 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 7/170 (4%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+ D ET + + I +G V + D T R + + P + ++HG+ Sbjct: 19 MKDFAAIDFET--ANGQRSSICSVGLVVVRDGEITIRHY-RLVRPYPNYYNYWNTQVHGM 75 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + F ++ E +AHN FD G + A Q + Sbjct: 76 SFQDTAHAAPFPEVWREIIPLIEG--LPLVAHNRPFDEGCLKAAFQAYGMEYPGYPFHCT 133 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + N H AL D+ + + +K++ Sbjct: 134 LRASRLAFGRDLPNHQLQTVALR-CGYDLTQHHHALTDAEACARIALKIL 182 >gi|328873520|gb|EGG21887.1| nucleotide binding protein 1-like protein [Dictyostelium fasciculatum] Length = 879 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 M R N R I D+E TGLD DRI+EI + D + Sbjct: 98 MSRDN--RLIWVDLEMTGLDITKDRIMEIACIVTDDNLQVIE 137 >gi|262405023|ref|ZP_06081575.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586] gi|262348862|gb|EEY98003.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586] Length = 209 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 7/171 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETT LD K ++ I A ++ + T++ F+V LC + ++++H I Sbjct: 30 YVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLC-APQSLDSGSVRIHKIRH 88 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L+D S DF N + ++ ++D ++ ++ PL I + Sbjct: 89 QDLQDGLSEKEALILLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQ 146 Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + P++ DL+ + + ++KH AL D+ + V++++ Sbjct: 147 IYHDKLEKHLPNAYFDLSLDAICRHLDLPLQNKHDALQDAIAAALVFVRLT 197 >gi|260770659|ref|ZP_05879590.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] gi|260614385|gb|EEX39573.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] gi|315178389|gb|ADT85303.1| DNA polymerase III subunit epsilon [Vibrio furnissii NCTC 11218] Length = 212 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 73/171 (42%), Gaps = 7/171 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETT LD ++ I A +++ + T++ F+V L + ++++H I Sbjct: 30 FVSLDCETTSLDPNRAELVTIAATKIIGNRILTSQPFEVRLR-APQSLDSGSVRIHRIRH 88 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L D S + F N + ++ ++D ++ +R PL S I + Sbjct: 89 QDLVDGISEQDALTRLIAFI--GNRPLVGYHIRYDKKILDIACRRHLGFPLPNSLIEVSH 146 Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + P++ DL+ + + + KH AL D+ + VY+++ Sbjct: 147 IYHDKLEKHLPNAYFDLSLDAICRHLDLPLQDKHDALQDAITAALVYVRLT 197 >gi|253773201|ref|YP_003036032.1| exodeoxyribonuclease X [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161904|ref|YP_003045012.1| exodeoxyribonuclease X [Escherichia coli B str. REL606] gi|297519020|ref|ZP_06937406.1| exodeoxyribonuclease X [Escherichia coli OP50] gi|242377565|emb|CAQ32320.1| exonuclease X [Escherichia coli BL21(DE3)] gi|253324245|gb|ACT28847.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973805|gb|ACT39476.1| exodeoxyribonuclease X [Escherichia coli B str. REL606] gi|253977999|gb|ACT43669.1| exodeoxyribonuclease X [Escherichia coli BL21(DE3)] Length = 220 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAIAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|154705994|ref|YP_001424798.1| exodeoxyribonuclease I [Coxiella burnetii Dugway 5J108-111] gi|154355280|gb|ABS76742.1| exodeoxyribonuclease I [Coxiella burnetii Dugway 5J108-111] Length = 458 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 3/128 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEA 59 + ++ + +D+ETTGL+ D+II+ A+ + ++ + P+ + Sbjct: 1 MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILIRLNPDVIPSPEAM 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + H + + + + E N + +N N P Sbjct: 61 II-HRFSIDQMLSGKAEIEAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPPY 119 Query: 120 PSRIIDTL 127 + + Sbjct: 120 THQYDNFC 127 >gi|254784370|ref|YP_003071798.1| exonuclease [Teredinibacter turnerae T7901] gi|237683955|gb|ACR11219.1| putative exonuclease [Teredinibacter turnerae T7901] Length = 235 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 61/176 (34%), Gaps = 5/176 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEA 59 ++R+N R +V D E +GLD+ +++ IG V + + T+ + + + + + + ++ Sbjct: 37 LMREN--RFLVVDCEMSGLDANRSQLLSIGWVVIENARITHASGKHLLI--HADRGAGDS 92 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 ++HG+ D + S ++ + + A Sbjct: 93 TRIHGLHDATIAGAKSAAAAITLLAKQVPGSVLVFHHAPLDLRFLQQTAYENFRCPLLFG 152 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + + C+ H A+ D+ +++ + Sbjct: 153 YVDTMLIEQRRLQLQGAESGLRLAQCRERYGLPPISGHHNAMTDARATAELLLAQT 208 >gi|293977832|ref|YP_003543262.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri DMIN] gi|292667763|gb|ADE35398.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri DMIN] Length = 1405 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 72/187 (38%), Gaps = 17/187 (9%) Query: 9 KIVFDIETTGLDSKND------------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 I+FD ETTGL + R++++ V L + + + P G + Sbjct: 2 YIIFDTETTGLPLDFNTPIINIINLPLPRLVKLSWVLLDEKLQLIELKDYIIKPEGYEIP 61 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + K+HGI+ ++ +K + E ++ +++ I HN FD+ + AE RI+K Sbjct: 62 FNSTKIHGISTKYAIEKGIKINFVLEEFNLIIKKSNFLIGHNVFFDIKIVCAEFIRIHKK 121 Query: 117 PLDPSRIIDTLSIARRKHPSSRN----DLNSLCKRYGI-TISHRSKHGALLDSHLLSDVY 171 + I + + + +L + Y H + D + + Sbjct: 122 ISFFKKKIIDTKEISINYCAIKMGEKLKWPTLTELYKKLFNDTFIAHDSKSDVLATTKCF 181 Query: 172 IKMMVGG 178 +++ G Sbjct: 182 FELLRIG 188 >gi|163735140|ref|ZP_02142576.1| Exonuclease [Roseobacter litoralis Och 149] gi|161391598|gb|EDQ15931.1| Exonuclease [Roseobacter litoralis Och 149] Length = 287 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 55/180 (30%), Gaps = 11/180 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D+ET ++ I +G + + + + P + +HGI Sbjct: 1 MKFVAIDVET--ANANMASICSVGVAVFENGEL-AQEWYSLIDP-RDYFDGMNVSIHGID 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + P+F+ I + ++ + R P +D+ Sbjct: 57 ETQVVGAPTFAEITEQLGAMLSDNVVVT----HTHFDRVAMHQAARHWSVPPVTCTWLDS 112 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +ARR L + H AL D+ V ++ ++ F Sbjct: 113 ARVARRTWEECAQRGYGLANVCKLIGHTFEHHNALEDAKASGVV---LLAAMNKSGFDLD 169 >gi|116492274|ref|YP_804009.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Pediococcus pentosaceus ATCC 25745] gi|116102424|gb|ABJ67567.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Pediococcus pentosaceus ATCC 25745] Length = 178 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 7/167 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET I + + T+ + P + + +++HGI Sbjct: 1 MNFIAMDFET--AAPTRASACSIALTVVQNDVITDE-LYSLINPET-EFNWRNVQVHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D P+F F + +AHNA FD + L+R + L + Sbjct: 57 QADVSDAPTF-PELWPVVKQFFTPDKLVVAHNATFDNSVLKKTLERYQINRLPYQTLDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + + LN++C GI + H H AL DS +++ + Sbjct: 116 RTSKSFYPDYTNHKLNTICDNLGIDLQH--HHNALDDSRACANILLH 160 >gi|305681196|ref|ZP_07404003.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] gi|305659401|gb|EFM48901.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] Length = 444 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 9/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN--GRKNSPEALKLHGIT 66 + D+ET ++ I +IG V + D + + + P +++HGIT Sbjct: 101 FVGVDVET--ANADWGSICQIGVVRVTDGMQVDSH-EWLCRPPAGIDHFDEGNIRIHGIT 157 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P F+++F E + + +AHNA+FD+ + Sbjct: 158 PDMVTDAPDFAAVFPEVVAYVAD--QVLVAHNAQFDLTAFSRACHATGTPVPHWKFACSL 215 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + K + + L + + G+ + H A+ D+ + +++++ + Sbjct: 216 AASRAAKLGITSHRLPVVAQHLGVE--LDNHHDAVADARACAGIFVQLALRAHATGDIET 273 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F I + + P T Sbjct: 274 VFTTLGFSLGDLNTERIYPVLSNPPTVTVA 303 >gi|154504776|ref|ZP_02041514.1| hypothetical protein RUMGNA_02285 [Ruminococcus gnavus ATCC 29149] gi|153794950|gb|EDN77370.1| hypothetical protein RUMGNA_02285 [Ruminococcus gnavus ATCC 29149] Length = 300 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 4/165 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV+D+ETTG++ D + + ++L F+ + P K+ P+A +HGIT E Sbjct: 135 IVYDLETTGVNPWKDEPLSMCIMDLQGKVI----FEHYFRPEHTKSWPDAAAIHGITPEK 190 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++ S + F+ + + FD F+ A ++ + I Sbjct: 191 VANESPMSFYRDQIQKIFDASDILITYNGINFDDSFLEAAGIKLPEVMQFDVMREYAWLI 250 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L S H A D Y KM Sbjct: 251 HDWDEYHQGWRWWRLIDCAAYYGYEFSAHDAAEDVKATLYCYKKM 295 >gi|116515062|ref|YP_802691.1| ribonuclease T [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285542|sp|Q057V1|RNT_BUCCC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|116256916|gb|ABJ90598.1| exoribonuclease T [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 221 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 65/186 (34%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIE+ G + D ++EI V L + K + + P G E++ + Sbjct: 21 VVIDIESAGFQADTDALLEIAIVTLKMNKSGWLKIDDRLHFHIIPFKGSIIKAESVAFNK 80 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + + +AHNA FD F+ A +R+ Sbjct: 81 IDPFNPLRGAVSEKNALKNIFKLVRKKININKCRKGILVAHNANFDHNFLMAASKRVGNL 140 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L CK GI H AL D+ + ++ +++ Sbjct: 141 NNPFHPFTTFDTAALSGLIFGQTVLAKACKLAGIPFDTNQAHSALYDTIQTAYLFCELVN 200 Query: 177 GGSQIN 182 ++ Sbjct: 201 RWKRLG 206 >gi|194365080|ref|YP_002027690.1| ribonuclease T [Stenotrophomonas maltophilia R551-3] gi|194347884|gb|ACF51007.1| ribonuclease T [Stenotrophomonas maltophilia R551-3] Length = 194 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 13/184 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G DS+ + ++EI AV + + +T + P G + P++L++ G Sbjct: 11 VVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHVVPAEGLEIDPKSLEVTG 70 Query: 65 ITDEFLKD--------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q A + HNA FD+GF+NA + R Sbjct: 71 IILDHPFRLAKEEKAALDHIFTPVRAAMKKYGCQRAILVGHNAHFDLGFVNAAVARTGHK 130 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ + L G+ H A+ D+ + ++ + Sbjct: 131 RNPFHPFSVFDTVTLAGIAYGQTVLARAANAAGLGWDANEAHSAVYDTEQTARLFCTIAN 190 Query: 177 GGSQ 180 + Sbjct: 191 AWPR 194 >gi|313637226|gb|EFS02740.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria seeligeri FSL S4-171] Length = 921 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 5/156 (3%) Query: 12 FDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + + DRII+ A + + T+ FL P + +L GI+ + + Sbjct: 2 VDLETTGNQASREDRIIQFAACFVESGKRL-ETYATFLNPE-KPIPAFIQELTGISPKDV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD P F + + ++AHN FD F+ E+ R ++ Sbjct: 60 KDAPLFEDVAPIIAGLLED--TIFVAHNVSFDWTFLEREMTRAGISLGKMKKLDTVELAR 117 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 L L +G+ + + + Sbjct: 118 IMYPGIDSYKLQDLSDEFGLGHDKPHQADSDAEVTA 153 >gi|300781342|ref|ZP_07091196.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] gi|300533049|gb|EFK54110.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] Length = 194 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 D+ETTGL ++ IG V + D Sbjct: 24 AVDVETTGLKPDKHHLVSIGWVPVTDRVID 53 >gi|149188401|ref|ZP_01866694.1| DNA polymerase III, epsilon subunit [Vibrio shilonii AK1] gi|148837619|gb|EDL54563.1| DNA polymerase III, epsilon subunit [Vibrio shilonii AK1] Length = 197 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 19/28 (67%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLD 36 +V D ETTGLD+ + I+ +G VE+ + Sbjct: 10 YLVLDFETTGLDANTNTILSLGWVEIAN 37 >gi|166711531|ref|ZP_02242738.1| ribonuclease T [Xanthomonas oryzae pv. oryzicola BLS256] Length = 211 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 56/185 (30%), Gaps = 13/185 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNG--RKNSPEALKLH 63 +V D+ET G DS ++EI V + T L P Sbjct: 26 VVVDVETGGFDSNKHALLEIACVPIEMDADGRFFPGDTASAHLVPAPGLEIEPKSLEITG 85 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAELQRINKD 116 + D + + Q A + HNA FD+ F+NA + R+ Sbjct: 86 IVLDHPFRLAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 145 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ + L + G+ + H A+ D+ + ++ K+ Sbjct: 146 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCKIAN 205 Query: 177 GGSQI 181 Sbjct: 206 AWPGP 210 >gi|15668541|ref|NP_247339.1| hypothetical protein MJ_0365 [Methanocaldococcus jannaschii DSM 2661] gi|2495934|sp|Q57811|Y365_METJA RecName: Full=Uncharacterized protein MJ0365 gi|1499152|gb|AAB98356.1| hypothetical protein MJ_0365 [Methanocaldococcus jannaschii DSM 2661] Length = 176 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLC 49 M K + DIETTGL+ RI+ IG V+L D + + + Sbjct: 1 MAKAIIDIETTGLNPMEHRIVAIG-VKLGDRDIILMDESEYYLLVN 45 >gi|333023692|ref|ZP_08451756.1| putative DNA polymerase III subunit epsilon [Streptomyces sp. Tu6071] gi|332743544|gb|EGJ73985.1| putative DNA polymerase III subunit epsilon [Streptomyces sp. Tu6071] Length = 239 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 FD+ETTG D + DRI+ + L T L P G + EA +HGI Sbjct: 11 FDLETTGTDVEQDRIVTAAVIRLDSSGAVAHTRTWLLDP-GVEIPAEATAIHGIP 64 >gi|300310766|ref|YP_003774858.1| oligoribonuclease [Herbaspirillum seropedicae SmR1] gi|300073551|gb|ADJ62950.1| oligoribonuclease (3'->5' exoribonuclease) protein [Herbaspirillum seropedicae SmR1] Length = 189 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/31 (51%), Positives = 20/31 (64%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +R N+M I D+E TGLD DRIIE+ V Sbjct: 9 VRPNEMNLIWVDMEMTGLDPDKDRIIEVAVV 39 >gi|220980061|emb|CAP72253.1| Hypothetical protein [Escherichia coli LF82] gi|323934293|gb|EGB30715.1| exonuclease [Escherichia coli E1520] Length = 185 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 66/173 (38%), Gaps = 9/173 (5%) Query: 7 MRKIV--FDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVF---LCPNGRKNSPEAL 60 M IV DIE+TGLD +IIEI +T R P R P+A Sbjct: 1 MTTIVAGIDIESTGLDFLAGHKIIEIAITRYE--LETQRHIDSLEMRFNP-RRNIDPKAQ 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGI+ E L +P S+ SE + +A + FD+ FI E D Sbjct: 58 AVHGISLEQLAAEPLLSNHASEIGAYMEACSAWVAHNGEAFDIPFIRHEFSGYGVRLPDV 117 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I LS R L L G H H AL D++L+ + K Sbjct: 118 PVIDTMLSGLWATEDGKRPRLEELAFSLGFIYDHAKAHSALYDTNLMMQCFFK 170 >gi|186475543|ref|YP_001857013.1| oligoribonuclease [Burkholderia phymatum STM815] gi|184192002|gb|ACC69967.1| Exonuclease RNase T and DNA polymerase III [Burkholderia phymatum STM815] Length = 207 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 51/180 (28%), Gaps = 9/180 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGI 65 M + D+E TGLD NDRIIEI V TN T + P + + Sbjct: 17 MNLVWLDMEMTGLDPDNDRIIEIAVV------VTNSTLDKMVEGPVLAIHQSDETLGKMD 70 Query: 66 TDEFLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 S + + + G I +D +R Sbjct: 71 DWNKNTHGRSGLIDRVRASTVTEADATERIRAFLGQHVPPGKSPMCGNSICQDRRFMARW 130 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L + L LC+R+ I + A+ + I + + Sbjct: 131 MPELETFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELRYYREHFL 190 >gi|145600855|ref|YP_001164931.1| oligoribonuclease [Yersinia pestis Pestoides F] gi|108777113|gb|ABG19632.1| oligoribonuclease [Yersinia pestis Nepal516] gi|108781821|gb|ABG15879.1| oligoribonuclease [Yersinia pestis Antiqua] gi|145212551|gb|ABP41958.1| oligoribonuclease [Yersinia pestis Pestoides F] Length = 227 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 20/30 (66%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 ++ +N+ I D+E TGLD + DRIIEI Sbjct: 46 IMAENQNNLIWIDLEMTGLDPERDRIIEIA 75 >gi|21957334|gb|AAM84211.1|AE013664_6 hypothetical protein y0623 [Yersinia pestis KIM 10] gi|45435231|gb|AAS60791.1| Oligoribonuclease (3'->5' exoribonuclease) [Yersinia pestis biovar Microtus str. 91001] Length = 230 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 20/30 (66%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 ++ +N+ I D+E TGLD + DRIIEI Sbjct: 49 IMAENQNNLIWIDLEMTGLDPERDRIIEIA 78 >gi|325955054|ref|YP_004238714.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922] gi|323437672|gb|ADX68136.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922] Length = 453 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 73/195 (37%), Gaps = 8/195 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIE TG + II+I D T F + P RK P KL ITD+ Sbjct: 2 FAILDIEATGGKVGEESIIDIAIFRY-DGQTTVDQFISLVNP-MRKIDPFVQKLTNITDK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F I + ++ + HN KFD + E +++ D IDT Sbjct: 60 MVLTAPKFHEIAKRIVE--ITEDCILVGHNVKFDYRMLRQEFKKLGYD--YEKDWIDTFE 115 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 A++ P+ + + I +H A D+ ++ +++ K + Sbjct: 116 FAQKLIPNMESYSL-GKLTNALGIPITDRHRASGDARATLKLF-QLLRDKDSEKIIQKKS 173 Query: 189 EDRFFKEEKKTVPNI 203 R K+ K+ + Sbjct: 174 GLRTEKKVKEKYQKL 188 >gi|255719107|ref|XP_002555834.1| KLTH0G18590p [Lachancea thermotolerans] gi|238937218|emb|CAR25397.1| KLTH0G18590p [Lachancea thermotolerans] Length = 323 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 3/62 (4%) Query: 8 RKIV-FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHG 64 R IV D E TGLD ND IIEI + ++ + + + Sbjct: 74 RPIVWVDCEMTGLDHVNDHIIEICCIITDGDLNIIDEAGYESVIHCDKKIMDAMNEWCID 133 Query: 65 IT 66 Sbjct: 134 HH 135 >gi|260773739|ref|ZP_05882654.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] gi|260610700|gb|EEX35904.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] Length = 237 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 52/165 (31%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ET+GL+ + D I+ +G + + + T Q + + E ++ I E Sbjct: 53 VVLDFETSGLNPRQDEILSVGMINIHYPVMSLATAQHYYVESEHCIEAETAVVNHIVPET 112 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L S + + + + + L+ PL + Sbjct: 113 LLGGISRHELIECLVESLSGKVVIAHGAEIEKQFLRQLLSLEDSLPLPLIFLDTMRLERS 172 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + DL R + H A D ++++ + Sbjct: 173 LIKYRGIMYPDLRLAHIREQKGLPPYLAHNAFADVVATGELFLAL 217 >gi|262199242|ref|YP_003270451.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262082589|gb|ACY18558.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 308 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 6/102 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 VFD+ETTG D + D+IIE+ V+ L NR ++ + P+ A ++HGI+ + Sbjct: 8 VFDVETTGTDRRRDQIIEL-CVQFGLGDDAPNRVWR--IRPDVAIEPA-AQEVHGISMDD 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 L + P F + E + + +N FD+G + AE + Sbjct: 64 LAECPRFPEVADELRE-LFASATVLVGYNVSFDIGMLQAEYE 104 >gi|317407747|gb|EFV87675.1| exonuclease [Achromobacter xylosoxidans C54] Length = 183 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 20/41 (48%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 +V D+ETTGL + + I+E AV + R + + Sbjct: 17 FVVADLETTGLSTASCEILEFAAVRVGADGAAEREYAQVVR 57 >gi|307326746|ref|ZP_07605938.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] gi|306887509|gb|EFN18503.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] Length = 241 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 22/77 (28%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D ++DRI+ V + + P Sbjct: 11 AFDTETTGVDVEHDRIVSAALVVQRGTGSLPEIRRWLVSPGVPVPPAATEIHGLTDAHLQ 70 Query: 71 KDKPSFSSIFSEFWDFF 87 + + + E Sbjct: 71 RHGRWPAPVMDEMARAI 87 >gi|15607062|ref|NP_214444.1| hypothetical protein aq_2108 [Aquifex aeolicus VF5] gi|2984321|gb|AAC07843.1| putative protein [Aquifex aeolicus VF5] Length = 210 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLC 49 R +VFD E T LD K +++ IGAVE+ + +++F L Sbjct: 36 RFVVFDCEATELDVKKAKLLSIGAVEVKNLEIDLSKSFYEILK 78 >gi|329938978|ref|ZP_08288352.1| exonuclease [Streptomyces griseoaurantiacus M045] gi|329301863|gb|EGG45756.1| exonuclease [Streptomyces griseoaurantiacus M045] Length = 242 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 5/115 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ V R + + P G EA +HG+T+E L Sbjct: 11 AFDTETTGVDVEGDRIVSAAVVVQEAAGARPRVRRWLVDP-GVPVPAEATAVHGLTEEHL 69 Query: 71 KDKPSFSSIFSEFW----DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + + + + + NA FD+ ++ EL+R LD Sbjct: 70 RRNGRWPAPVMREMADELQYLAAAGRPLVVMNAPFDLTLLDRELRRHRASSLDRW 124 >gi|304411957|ref|ZP_07393568.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS183] gi|307303275|ref|ZP_07583030.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica BA175] gi|304349817|gb|EFM14224.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS183] gi|306913635|gb|EFN44057.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica BA175] Length = 228 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK 39 + D+E TGL+ + D+I+ IG V + Sbjct: 43 VAMDLEMTGLNPQQDQILSIGLVPIEHGEI 72 >gi|16082354|ref|NP_394831.1| hypothetical protein Ta1376 [Thermoplasma acidophilum DSM 1728] gi|10640719|emb|CAC12497.1| hypothetical protein [Thermoplasma acidophilum] Length = 188 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 15/27 (55%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLD 36 I D ETTGLD +I +GAV D Sbjct: 2 IFIDTETTGLDPTKCSVISVGAVVYED 28 >gi|304386198|ref|ZP_07368531.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus acidilactici DSM 20284] gi|304327555|gb|EFL94782.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus acidilactici DSM 20284] Length = 181 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 8/171 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI N + D ET I + + T+ + P + + Sbjct: 1 MIFLN---FVAIDFET--AAPARASACSIALTVVQNDQITDE-LYSLINPETK-FHWRNV 53 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HGI + ++D P+F F + +AHNA FD + L+R + L Sbjct: 54 QVHGIHEADVQDAPTF-PELWPILQPFFTPDQLVVAHNANFDNSVLKKTLERYELNRLPY 112 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + + LN+LC GI + H + +Y Sbjct: 113 QTLDTLRTSRSFFPNYPNHKLNTLCDNLGIELEHHHNALDDSLACANILLY 163 >gi|297625330|ref|YP_003687093.1| DNA polymerase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921095|emb|CBL55640.1| DNA polymerase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 522 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 54/170 (31%), Gaps = 13/170 (7%) Query: 9 KIVFDIET----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + D ET +G+ + +I V + +R F L P + E LHG Sbjct: 348 FVAADFETANRSSGVSA-----CQIALVRVESGRVVDR-FNTLLKPPSGFDDFEFTYLHG 401 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + PS+ I +A AHNA FD + + L Sbjct: 402 ISARDTRTAPSWPDIIPAIRG--FAGDATVYAHNAPFDSRVWRQLDEFFHTRSLPDHFFC 459 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L+ ARR P N H A D+ + + + Sbjct: 460 SYLT-ARRMMPGLDNYRLPTVLERCAPHFVLDHHKADSDAEACALIVAAL 508 >gi|218885422|ref|YP_002434743.1| exonuclease RNase T and DNA polymerase III [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756376|gb|ACL07275.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 267 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPE 58 M + D E TGL+ D ++ +GAV L + TF+ L P Sbjct: 23 MVFVSLDCEMTGLNPARDDLLAVGAVVLRGMRLDLSATFRGLLRPACPVRPEG 75 >gi|117920025|ref|YP_869217.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. ANA-3] gi|117612357|gb|ABK47811.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. ANA-3] Length = 228 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 18/30 (60%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK 39 I D+E TGL+ D+I+ IG V + + + Sbjct: 43 IAMDLEMTGLNPLQDQILSIGLVPIENGAI 72 >gi|238793401|ref|ZP_04637027.1| Oligoribonuclease [Yersinia intermedia ATCC 29909] gi|238727370|gb|EEQ18898.1| Oligoribonuclease [Yersinia intermedia ATCC 29909] Length = 181 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + +N+ I D+E TGLD + DRIIEI Sbjct: 1 MAENQNNLIWIDLEMTGLDPERDRIIEIA 29 >gi|237710481|ref|ZP_04540962.1| exonuclease [Bacteroides sp. 9_1_42FAA] gi|237726988|ref|ZP_04557469.1| exonuclease [Bacteroides sp. D4] gi|265756507|ref|ZP_06090713.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229433844|gb|EEO43921.1| exonuclease [Bacteroides dorei 5_1_36/D4] gi|229455203|gb|EEO60924.1| exonuclease [Bacteroides sp. 9_1_42FAA] gi|263233695|gb|EEZ19310.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 162 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 6/159 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 D ET +++ I +G V + + +R F + P ++HG+T Sbjct: 3 NFAAIDFET--ANNERTSICSVGVVIVRNGEIADR-FYSLVHPEPDYYLYWNTRIHGLTQ 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E P FS ++ + +AHN FD + A + D D T Sbjct: 60 EDTAHAPVFSEVWKQVAPKIEG--LPLVAHNKAFDERCLKAVFRTYCMDYPDYDFYC-TY 116 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 +R+ + L+++ +G + + A ++ Sbjct: 117 QASRKLKGLRNHQLHTVAGFFGFELENHHHALADAEACA 155 >gi|222628577|gb|EEE60709.1| hypothetical protein OsJ_14204 [Oryza sativa Japonica Group] Length = 142 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 D+E TGLD DRI+EI + + D T R Sbjct: 74 IDLEMTGLDITKDRILEIACI-ITDGKLTKR 103 >gi|304440352|ref|ZP_07400241.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371104|gb|EFM24721.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 296 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 + DIET GLD K ++IIEIGA++ + F + Sbjct: 129 FVFLDIETDGLDEKTNKIIEIGAIKSD----SKEEFHKIVK 165 >gi|296158296|ref|ZP_06841128.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. Ch1-1] gi|295891632|gb|EFG71418.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. Ch1-1] Length = 207 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 9/199 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKL 62 ++ M + D+E TGL+ +DRIIEI V TN T + P + + Sbjct: 15 RSDMNLVWLDMEMTGLEPDSDRIIEIAVV------VTNSTLDRMVEGPVLAIHQSDETLA 68 Query: 63 HGITDEFLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 S + + + + G I +D Sbjct: 69 GMDQWNQNTHGRSGLIDRVKASTVSEADATEQIRDFLSVYVPPGKSPMCGNSICQDRRFM 128 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +R + L + L LC+R+ I + A+ + I + + Sbjct: 129 ARWMPDLERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYRE 188 Query: 181 INFGFKTNEDRFFKEEKKT 199 + E+ Sbjct: 189 HFLIPSAPDAVNGAEKAAE 207 >gi|262392974|ref|YP_003284828.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] gi|262336568|gb|ACY50363.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] Length = 209 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC 49 + D ETT LD ++ I A +++ + T++ F+V L Sbjct: 30 YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSQPFEVRLR 71 >gi|332073070|gb|EGI83549.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Streptococcus pneumoniae GA17570] Length = 168 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 5/103 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 L G+TD+ L P FS + + +D + ++AHN +FD Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDAN 98 >gi|212693424|ref|ZP_03301552.1| hypothetical protein BACDOR_02940 [Bacteroides dorei DSM 17855] gi|212664068|gb|EEB24642.1| hypothetical protein BACDOR_02940 [Bacteroides dorei DSM 17855] Length = 162 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 6/159 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 D ET +++ I +G V + + +R F + P ++HG+T Sbjct: 3 NFAAIDFET--ANNERTSICSVGVVIVRNGEIADR-FYSLVHPEPDYYLYWNTRIHGLTQ 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E P FS ++ + +AHN FD + + D D T Sbjct: 60 EDTAHAPVFSEVWKQVAPKIEG--LPLVAHNKAFDERCLKTVFRTYCMDYPDYDFYC-TY 116 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 +R+ + L+++ +G + + A ++ Sbjct: 117 QASRKLKGLRNHQLHTVAGFFGFELENHHHALADAEACA 155 >gi|169752556|gb|ACA70074.1| Exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis YPIII] gi|186696803|gb|ACC87432.1| Exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis PB1/+] Length = 227 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 20/30 (66%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 ++ +N+ I D+E TGLD + DRIIEI Sbjct: 46 IMAENQNNLIWIDLEMTGLDPERDRIIEIA 75 >gi|309702068|emb|CBJ01382.1| exodeoxyribonuclease X [Escherichia coli ETEC H10407] gi|323937102|gb|EGB33382.1| exonuclease [Escherichia coli E1520] Length = 220 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|224537614|ref|ZP_03678153.1| hypothetical protein BACCELL_02494 [Bacteroides cellulosilyticus DSM 14838] gi|224520756|gb|EEF89861.1| hypothetical protein BACCELL_02494 [Bacteroides cellulosilyticus DSM 14838] Length = 164 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 53/159 (33%), Gaps = 5/159 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 D ET + + + +G V + + T+ + P + ++HG+T Sbjct: 3 NFAAIDFET--ANEQRTSVCSVGIVIVREGEIV-DTYYSLIRPEPEYYTYWNTRVHGLTL 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 P F +++ E IAHN FD + A + + D D Sbjct: 60 ADTAKAPIFPTVWQEIAPLIEG--LPLIAHNKGFDESCLKAVFRTYSLDYPDYEFHCTLS 117 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + RR L+++ +G + A ++ Sbjct: 118 TARRRIKGLPNYQLHTVAAYFGYELEQHHHALADAEACA 156 >gi|190573537|ref|YP_001971382.1| ribonuclease T [Stenotrophomonas maltophilia K279a] gi|190011459|emb|CAQ45077.1| putative ribonuclease T [Stenotrophomonas maltophilia K279a] Length = 216 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 13/184 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G DS+ + ++EI AV + + +T + P G + P++L++ G Sbjct: 33 VVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHVVPAEGLEIDPKSLEVTG 92 Query: 65 ITDEFLKD--------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q A + HNA FD+GF+NA + R Sbjct: 93 IILDHPFRLAKEEKAALDHIFTPVRAAMKKYGCQRAILVGHNAHFDLGFVNAAVARTGHK 152 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ + L G+ H A+ D+ + ++ + Sbjct: 153 RNPFHPFSVFDTVTLAGIAYGQTVLARAATAAGLGWDANEAHSAVYDTEQTARLFCTIAN 212 Query: 177 GGSQ 180 + Sbjct: 213 AWPR 216 >gi|293411964|ref|ZP_06654689.1| conserved hypothetical protein [Escherichia coli B354] gi|291469519|gb|EFF12008.1| conserved hypothetical protein [Escherichia coli B354] Length = 185 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 66/173 (38%), Gaps = 9/173 (5%) Query: 7 MRKIV--FDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVF---LCPNGRKNSPEAL 60 M IV DIE+TGLD +IIEI +T R P R P+A Sbjct: 1 MTTIVAGIDIESTGLDFLAGHKIIEIAITRYE--LETQRHIDSLEMRFNP-RRNIDPKAQ 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGI+ E L +P S+ SE + +A + FD+ FI E + Sbjct: 58 AVHGISLEQLAAEPLLSNHASEIGAYMGACSAWIAHNGEAFDIPFIRHEFSGYGVRLPEV 117 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I LS R L L G H H AL D++L+ + K Sbjct: 118 PVIDTMLSGLWATEDGKRPRLEELAFSLGFIYDHAKAHSALYDTNLMMQCFFK 170 >gi|205355328|ref|ZP_03222099.1| exonuclease possibly DNA polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni CG8421] gi|205346562|gb|EDZ33194.1| exonuclease possibly DNA polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni CG8421] Length = 233 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 6/122 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIE+TG I+EIGAV++ + + R FQ F+ ++ +L GIT E + Sbjct: 51 IVDIESTGG-VSKGEILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYEMV 106 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ PS + + S+F +++ ++AHN +FD FI+ L L RI Sbjct: 107 ENAPSLTKVLSDF--RLFLKDSIFVAHNVRFDYSFISKALNECGFGILLNRRICTIEFAQ 164 Query: 131 RR 132 Sbjct: 165 CC 166 >gi|91228447|ref|ZP_01262371.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] gi|269966808|ref|ZP_06180881.1| putative DNA polymerase III, epsilon subunit [Vibrio alginolyticus 40B] gi|91187982|gb|EAS74290.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] gi|269828475|gb|EEZ82736.1| putative DNA polymerase III, epsilon subunit [Vibrio alginolyticus 40B] Length = 209 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC 49 + D ETT LD ++ I A +++ + T++ F+V L Sbjct: 30 YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSQPFEVRLR 71 >gi|145218937|ref|YP_001129646.1| exonuclease, RNase T and DNA polymerase III [Prosthecochloris vibrioformis DSM 265] gi|145205101|gb|ABP36144.1| Exonuclease, RNase T and DNA polymerase III [Chlorobium phaeovibrioides DSM 265] Length = 194 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 72/187 (38%), Gaps = 17/187 (9%) Query: 7 MRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 M+K++ FD+ETTG+D + + II+ + +D + +F++ + P G + EAL++ G Sbjct: 1 MKKVLWFDLETTGIDPERNGIIQFAGLAEIDGAVV-ESFEIKMQPHEGAQIDDEALEVTG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQ--------NAEWIAHNAKFDVGFINAELQRINKD 116 T E + + + + DF +N FD+ F++ +R ++ Sbjct: 60 FTREAIPTFTPHAEAYRQIDDFLARHVSRFDRNDKFYPAGYNVHFDLEFLSRMFKRFDQY 119 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR------SKHGALLDSHLLSDV 170 L L + SL T + H AL D + Sbjct: 120 GLGSFTNWRMLDPQPILNLMDYMGRISLPNHRLQTACDHFGVKLENAHDALADITATRAL 179 Query: 171 YIKMMVG 177 +++ Sbjct: 180 MQRLLEH 186 >gi|290956499|ref|YP_003487681.1| DNA exonuclease [Streptomyces scabiei 87.22] gi|260646025|emb|CBG69116.1| putative DNA exonuclease [Streptomyces scabiei 87.22] Length = 239 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 FD+ETTG D + RI+ +E+ D + + P G + EA+ +HGI Sbjct: 11 FDLETTGTDPREARIVTGAVIEVRDGERIG-HREWLADP-GVEIPEEAVAVHGI 62 >gi|294628378|ref|ZP_06706938.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] gi|292831711|gb|EFF90060.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] Length = 242 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD ETTG+D + DRI+ AV + D T R + + P G EA +HG+T+E Sbjct: 12 AFDTETTGVDVETDRIVS-AAVVVQDAPGTRPRVSRWLVNP-GVPVPREATAVHGLTEER 69 Query: 70 LKDKPSFSSIFSEFWD 85 L+ + + Sbjct: 70 LQRTGRWPAPVMYEIA 85 >gi|288934625|ref|YP_003438684.1| exonuclease RNase T and DNA polymerase III [Klebsiella variicola At-22] gi|290508826|ref|ZP_06548197.1| exodeoxyribonuclease X [Klebsiella sp. 1_1_55] gi|288889334|gb|ADC57652.1| Exonuclease RNase T and DNA polymerase III [Klebsiella variicola At-22] gi|289778220|gb|EFD86217.1| exodeoxyribonuclease X [Klebsiella sp. 1_1_55] Length = 219 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 17/162 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++D T + P+ R +P+A+ +H IT+E + Sbjct: 4 VIDTETCGL---QGGIVEIASVDIVDGRIT-NPMSHLVRPD-RPITPQAMAIHRITEEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I + + ++AHNA FD + + Sbjct: 59 ADKPWIEEIIPHY-----LGSPWYVAHNASFDRRVLPEMSGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S L K T H AL D ++ + + + Sbjct: 107 WPGIKYSNMGLYKSRKLNVATPPGLHHHRALYDCYITAALLL 148 >gi|237808201|ref|YP_002892641.1| ribonuclease T [Tolumonas auensis DSM 9187] gi|237500462|gb|ACQ93055.1| ribonuclease T [Tolumonas auensis DSM 9187] Length = 206 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 65/194 (33%), Gaps = 13/194 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + K D ++E+ A +++ ++T + P G A+ +G Sbjct: 13 VVIDVETAGFNPKTDALLEMAATTLKMDQDGWLSLDQTIHFHVEPFEGANIEKAAIDFNG 72 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNA--------EWIAHNAKFDVGFINAELQRINKD 116 I + +AHNA FD F+ A +R + Sbjct: 73 IDPFNPLRGAVSEYDALHETFKIIRKGMKAEGCNRAIVVAHNATFDHSFMMAASERASLK 132 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + A + L C+ I + H AL D+ ++++ ++ Sbjct: 133 RNPFHPFATFDTAALAGLALGQTVLAKACQTAAIPFDNNEAHSALYDTERTAELFCYIVN 192 Query: 177 GGSQINFGFKTNED 190 + + + Sbjct: 193 KWKSLGGWPLADSE 206 >gi|206579741|ref|YP_002237768.1| exodeoxyribonuclease X [Klebsiella pneumoniae 342] gi|206568799|gb|ACI10575.1| exodeoxyribonuclease X [Klebsiella pneumoniae 342] Length = 219 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 61/162 (37%), Gaps = 17/162 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++D T + P+ R +P+A+ +H IT+E + Sbjct: 4 VIDTETCGL---QGGIVEIASVDIVDGRIT-NPMSHLVRPD-RPITPQAMAIHRITEEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I + ++AHNA FD + + Sbjct: 59 ADKPWIEEIIPY-----YLGSPWYVAHNASFDRRVLPEMSGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S L K T H AL D ++ + + + Sbjct: 107 WPGIKYSNMGLYKSRKLNVATPPGLHHHRALYDCYITAALLL 148 >gi|152988793|ref|YP_001347003.1| ribonuclease T [Pseudomonas aeruginosa PA7] gi|166200015|sp|A6V1R8|RNT_PSEA7 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|150963951|gb|ABR85976.1| ribonuclease T [Pseudomonas aeruginosa PA7] Length = 224 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 13/193 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI A + + T+ + P G P AL+ G Sbjct: 32 VVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTG 91 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HN+ FD+GF+NA + R Sbjct: 92 IKLDHPLRMAVQEEQALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIK 151 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ G+ +R H A D+ ++++ ++ Sbjct: 152 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVN 211 Query: 177 GGSQINFGFKTNE 189 ++ ++ Sbjct: 212 RWKEMGGWMDDDD 224 >gi|15598724|ref|NP_252218.1| ribonuclease T [Pseudomonas aeruginosa PAO1] gi|107103040|ref|ZP_01366958.1| hypothetical protein PaerPA_01004109 [Pseudomonas aeruginosa PACS2] gi|116051527|ref|YP_789637.1| ribonuclease T [Pseudomonas aeruginosa UCBPP-PA14] gi|218890245|ref|YP_002439109.1| ribonuclease T [Pseudomonas aeruginosa LESB58] gi|254242188|ref|ZP_04935510.1| ribonuclease T [Pseudomonas aeruginosa 2192] gi|296387969|ref|ZP_06877444.1| ribonuclease T [Pseudomonas aeruginosa PAb1] gi|313108873|ref|ZP_07794856.1| ribonuclease T [Pseudomonas aeruginosa 39016] gi|14548235|sp|Q9HY82|RNT_PSEAE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|122260667|sp|Q02QZ9|RNT_PSEAB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|9949677|gb|AAG06916.1|AE004773_5 ribonuclease T [Pseudomonas aeruginosa PAO1] gi|115586748|gb|ABJ12763.1| ribonuclease T [Pseudomonas aeruginosa UCBPP-PA14] gi|126195566|gb|EAZ59629.1| ribonuclease T [Pseudomonas aeruginosa 2192] gi|218770468|emb|CAW26233.1| ribonuclease T [Pseudomonas aeruginosa LESB58] gi|310881358|gb|EFQ39952.1| ribonuclease T [Pseudomonas aeruginosa 39016] Length = 224 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 13/193 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI A + + T+ + P G P AL+ G Sbjct: 32 VVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTG 91 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HN+ FD+GF+NA + R Sbjct: 92 IKLDHPLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIK 151 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ G+ +R H A D+ ++++ ++ Sbjct: 152 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVN 211 Query: 177 GGSQINFGFKTNE 189 ++ ++ Sbjct: 212 RWKEMGGWMDDDD 224 >gi|152992669|ref|YP_001358390.1| exonuclease [Sulfurovum sp. NBC37-1] gi|151424530|dbj|BAF72033.1| exonuclease [Sulfurovum sp. NBC37-1] Length = 244 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 2/119 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++FD ETTG + + DRII+IGA+ + + F + + D Sbjct: 3 KYVLFDTETTG-NQEADRIIQIGAMIVHSKDEI-EVFDELCSTQVPISIEAMEVHNITPD 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + F++ N IAHN FD+G + E + +D R Sbjct: 61 VIAGKPTYSETAFAKRVQELNTTENYLIAHNISFDLGMLEKEGFVNHYTLIDTVRCTKH 119 >gi|26108511|gb|AAN80713.1|AE016761_288 Exodeoxyribonuclease X [Escherichia coli CFT073] Length = 238 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 22 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 76 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 77 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 124 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 125 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 171 >gi|325917515|ref|ZP_08179720.1| RNAse T [Xanthomonas vesicatoria ATCC 35937] gi|325536273|gb|EGD08064.1| RNAse T [Xanthomonas vesicatoria ATCC 35937] Length = 213 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 13/185 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D ++EI V + T L P G + P++L++ G Sbjct: 28 VVVDVETGGFDWNKHALLEIACVPIEMDADGRFFPGETASAHLVPAPGLEIDPKSLEITG 87 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q A + HNA FD+ F+NA + R+ Sbjct: 88 IVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 147 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ + L + G+ + H A+ D+ + ++ + Sbjct: 148 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCTIAN 207 Query: 177 GGSQI 181 Sbjct: 208 AWPGP 212 >gi|238019461|ref|ZP_04599887.1| hypothetical protein VEIDISOL_01330 [Veillonella dispar ATCC 17748] gi|237864160|gb|EEP65450.1| hypothetical protein VEIDISOL_01330 [Veillonella dispar ATCC 17748] Length = 327 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 71/205 (34%), Gaps = 25/205 (12%) Query: 7 MRKIVFDIE--------------T----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 M IVFD+E T TG II+IGAV+L + F +F+ Sbjct: 1 MNYIVFDLEWNQPYSNDISFMKRTKMPLTG------EIIQIGAVKLNEKMDIVDHFTMFI 54 Query: 49 CPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 P + +L GIT L F + F ++ ++ + + N Sbjct: 55 KPQYLPRMHKHVRELTGITSRELDHGVPFKTAMQYFQNWCGDEYMLLSWGSDDILILREN 114 Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 L R+ D + +R S + + + I+ H S H AL D+ Sbjct: 115 LMLHRMKALSYDQWVDAQMIYSYQRYGTSQQYSVAHAMEDLNISTEHLSAHNALHDAVFT 174 Query: 168 SDVYIKMMVGGSQINFGFKTNEDRF 192 + + K+ + +++ E Sbjct: 175 AHICQKLDIPQGILHYDQIRKESSN 199 >gi|170019811|ref|YP_001724765.1| exodeoxyribonuclease X [Escherichia coli ATCC 8739] gi|169754739|gb|ACA77438.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli ATCC 8739] Length = 220 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-KPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|57237506|ref|YP_178520.1| DNA polymerase III subunit epsilon [Campylobacter jejuni RM1221] gi|57166310|gb|AAW35089.1| exonuclease, DNA polymerase III, epsilon subunit family [Campylobacter jejuni RM1221] Length = 233 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 6/122 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIE+TG I+EIGAV++ + + R FQ F+ ++ +L GIT E + Sbjct: 51 IVDIESTGG-VSKGEILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYEMV 106 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ PS + + S+F +++ ++AHN +FD FI+ L L RI Sbjct: 107 ENAPSLTKVLSDF--RLFLKDSIFVAHNVRFDYSFISKALNECGFGILLNRRICTIEFAQ 164 Query: 131 RR 132 Sbjct: 165 CC 166 >gi|314985436|gb|EFT29528.1| hypothetical protein HMPREF9594_00564 [Propionibacterium acnes HL005PA1] gi|328759611|gb|EGF73213.1| hypothetical protein HMPREF9343_02650 [Propionibacterium acnes HL099PA1] Length = 192 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 37/161 (22%), Gaps = 10/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDE 68 ++ D ETT LD RIIEI + + T + P P A Sbjct: 12 VILDTETTDLD---GRIIEISII----DAATGTVLMDQLINPTLLDIPPGAEWAIRRPHT 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L ++ + + E + + + + T Sbjct: 65 VLLPVRVRLGATNQSTTH-HTAHGERTTPRHEGVQRHHCRKHKESPGFGPHKAGQ-PTGG 122 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 R + L + G L Sbjct: 123 RGSRSKVLAPFFLRKVYHVRGHVSKEDIWGKNCHGCWLTRK 163 >gi|127513296|ref|YP_001094493.1| exonuclease, RNase T and DNA polymerase III [Shewanella loihica PV-4] gi|126638591|gb|ABO24234.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica PV-4] Length = 226 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 1/72 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+E TGL++ D+I+ IG V + + + G + T Sbjct: 45 AIDLEMTGLNASFDQILSIGVVPIRQGQLILSEAQHKLVQIEGSVGQSATIHGILDTHLD 104 Query: 70 LKDKPSFSSIFS 81 P + + Sbjct: 105 AALTPEQAMAWF 116 >gi|333003546|gb|EGK23086.1| exonuclease family protein [Shigella flexneri VA-6] gi|333004693|gb|EGK24216.1| exonuclease family protein [Shigella flexneri K-272] gi|333018414|gb|EGK37712.1| exonuclease family protein [Shigella flexneri K-227] Length = 220 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSLLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|318076131|ref|ZP_07983463.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF] Length = 384 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 FD+ETTG D + DRI+ + L T L P G + EA +HGI Sbjct: 11 FDLETTGTDVEQDRIVTAAVIRLDSSGTVAHTRTWLLDP-GVEIPAEATAIHGIP 64 >gi|318060902|ref|ZP_07979623.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG] Length = 239 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 FD+ETTG D + DRI+ + L T L P G + EA +HGI Sbjct: 11 FDLETTGTDVEQDRIVTAAVIRLDSSGTVAHTRTWLLDP-GVEIPAEATAIHGIP 64 >gi|254524060|ref|ZP_05136115.1| ribonuclease T [Stenotrophomonas sp. SKA14] gi|219721651|gb|EED40176.1| ribonuclease T [Stenotrophomonas sp. SKA14] Length = 194 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 13/184 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G DS+ + ++EI AV + + +T + P G + P++L++ G Sbjct: 11 VVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHVVPAEGLEIDPKSLEVTG 70 Query: 65 ITDEFLKD--------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + Q A + HNA FD+GF+NA + R Sbjct: 71 IILDHPFRLAKEEKAALDHIFVPVRAAMKKYGCQRAILVGHNAHFDLGFVNAAVARTGHK 130 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ + L G+ H A+ D+ + ++ + Sbjct: 131 RNPFHPFSVFDTVTLAGIAYGQTVLARAATAAGLGWDANEAHSAVYDTEQTARLFCTIAN 190 Query: 177 GGSQ 180 + Sbjct: 191 AWPR 194 >gi|148927622|ref|ZP_01811085.1| Exodeoxyribonuclease I [candidate division TM7 genomosp. GTL1] gi|147887031|gb|EDK72536.1| Exodeoxyribonuclease I [candidate division TM7 genomosp. GTL1] Length = 476 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 7/128 (5%) Query: 1 MIRKNKMRKIVF--DIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLC-PNGRKNS 56 M++ M + F D+ET+GLD + DRI++ +D F + + + S Sbjct: 1 MMKD--MAETFFFYDLETSGLDPRRDRIMQFAGQRTTMDLDPIGEPFNILVRLNDDVLPS 58 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSE-FWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+ + GIT + ++ + F + F + + N N Sbjct: 59 PDAVMVTGITPQKTHEEGIAEAEFIKLFHNQVCTPGTVTVGFNNIRFDDEFIRFALWRNF 118 Query: 116 DPLDPSRI 123 Sbjct: 119 HDPYEWAW 126 >gi|121582521|ref|YP_974053.1| exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42] gi|120608579|gb|ABM44318.1| Exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42] Length = 302 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 59/176 (33%), Gaps = 10/176 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D ETTGL D ++E+ V+ + P+ PEA +HGIT Sbjct: 131 RTVYMDTETTGLYGGCGDELLELALVDDAGNVL----LDSLVKPDRHTEWPEAQAIHGIT 186 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSRI 123 + + PS S+ + + +NA FD+ F+ ++ + Sbjct: 187 PADVMNAPSLESLLPRLLAVIED-AGTLVIYNAGFDLAFLPDAVRPVASNKALCAMHAFS 245 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + R+ + L G S H A D+ V+ + Sbjct: 246 LHAGEWDERRQSYRWHKLGVAACAAG-HRWEGSAHRARADALATRSVWHWLCAQVK 300 >gi|284042646|ref|YP_003392986.1| exonuclease RNase T and DNA polymerase III [Conexibacter woesei DSM 14684] gi|283946867|gb|ADB49611.1| Exonuclease RNase T and DNA polymerase III [Conexibacter woesei DSM 14684] Length = 259 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R FDIETTG+D ++DRI+ AV L T + P G + A +HGIT Sbjct: 3 RLAAFDIETTGIDPQSDRIVT-AAVSLAGDARPTVDH-DWLVDP-GVEIPAGATAVHGIT 59 Query: 67 DEF 69 + Sbjct: 60 TDH 62 >gi|150260590|ref|ZP_01917318.1| oligoribonuclease [Yersinia pestis CA88-4125] gi|161484882|ref|NP_667960.2| oligoribonuclease [Yersinia pestis KIM 10] gi|161511446|ref|NP_991914.2| oligoribonuclease [Yersinia pestis biovar Microtus str. 91001] gi|162419396|ref|YP_001605286.1| oligoribonuclease [Yersinia pestis Angola] gi|165926762|ref|ZP_02222594.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. F1991016] gi|165936480|ref|ZP_02225048.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. IP275] gi|166011882|ref|ZP_02232780.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. E1979001] gi|166213971|ref|ZP_02240006.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. B42003004] gi|167400566|ref|ZP_02306075.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418918|ref|ZP_02310671.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423542|ref|ZP_02315295.1| oligoribonuclease [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218927569|ref|YP_002345444.1| oligoribonuclease [Yersinia pestis CO92] gi|229358039|ref|YP_653824.2| oligoribonuclease [Yersinia pestis Antiqua] gi|229559847|ref|YP_649232.2| oligoribonuclease [Yersinia pestis Nepal516] gi|229836625|ref|ZP_04456791.1| oligoribonuclease [Yersinia pestis Pestoides A] gi|229840237|ref|ZP_04460396.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842315|ref|ZP_04462470.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. India 195] gi|229903946|ref|ZP_04519059.1| oligoribonuclease [Yersinia pestis Nepal516] gi|270489066|ref|ZP_06206140.1| exonuclease [Yersinia pestis KIM D27] gi|294502475|ref|YP_003566537.1| oligoribonuclease [Yersinia pestis Z176003] gi|20138838|sp|Q8ZIW9|ORN_YERPE RecName: Full=Oligoribonuclease gi|115346180|emb|CAL19048.1| oligoribonuclease [Yersinia pestis CO92] gi|149289998|gb|EDM40075.1| oligoribonuclease [Yersinia pestis CA88-4125] gi|162352211|gb|ABX86159.1| oligoribonuclease [Yersinia pestis Angola] gi|165915596|gb|EDR34205.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. IP275] gi|165921385|gb|EDR38609.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. F1991016] gi|165989241|gb|EDR41542.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. E1979001] gi|166204766|gb|EDR49246.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. B42003004] gi|166962912|gb|EDR58933.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049934|gb|EDR61342.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057712|gb|EDR67458.1| oligoribonuclease [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679716|gb|EEO75819.1| oligoribonuclease [Yersinia pestis Nepal516] gi|229690625|gb|EEO82679.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. India 195] gi|229696603|gb|EEO86650.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706309|gb|EEO92317.1| oligoribonuclease [Yersinia pestis Pestoides A] gi|262360505|gb|ACY57226.1| oligoribonuclease [Yersinia pestis D106004] gi|262364452|gb|ACY61009.1| oligoribonuclease [Yersinia pestis D182038] gi|270337570|gb|EFA48347.1| exonuclease [Yersinia pestis KIM D27] gi|294352934|gb|ADE63275.1| oligoribonuclease [Yersinia pestis Z176003] gi|320013769|gb|ADV97340.1| oligoribonuclease [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 181 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + +N+ I D+E TGLD + DRIIEI Sbjct: 1 MAENQNNLIWIDLEMTGLDPERDRIIEIA 29 >gi|332756741|gb|EGJ87088.1| exonuclease family protein [Shigella flexneri 4343-70] gi|333004838|gb|EGK24360.1| exonuclease family protein [Shigella flexneri K-218] Length = 220 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSLLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|170739960|ref|YP_001768615.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] gi|168194234|gb|ACA16181.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] Length = 186 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 64/178 (35%), Gaps = 8/178 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR + D ET + + D +G + D R + P + SP +++HGI Sbjct: 1 MRTLAIDFET--ANERRDSACAVGLAWIEDGRVVRRE-ARLIRPPDLRFSPFNIRVHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + D F + F A +AHNA FDVG + A L + + Sbjct: 58 PEDVADAKPFGEAMAPFLPEIAG--ALVLAHNASFDVGVLCAALAACGLPRPRFTSLCTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 R+ +R L L +R G H A D+ + + + M + Sbjct: 116 QLARRQWPGEARYRLPILAERLG---IPLRHHDAGEDAFACAQIALAAMREAGAPDLA 170 >gi|66395669|ref|YP_240034.1| ORF013 [Staphylococcus phage 47] gi|209363557|ref|YP_002267975.1| hypothetical protein phi2958PVL_gp05 [Staphylococcus phage phi2958PVL] gi|257428268|ref|ZP_05604666.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|282905892|ref|ZP_06313747.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282919259|ref|ZP_06326994.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus C427] gi|284024544|ref|ZP_06378942.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus 132] gi|62636093|gb|AAX91204.1| ORF013 [Staphylococcus phage 47] gi|208973058|dbj|BAG74374.1| hypothetical protein [Staphylococcus phage phi2958PVL] gi|257275109|gb|EEV06596.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|282317069|gb|EFB47443.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus C427] gi|282331184|gb|EFB60698.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Btn1260] Length = 306 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 66/216 (30%), Gaps = 12/216 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D+ET + + I I ++ D + + + P S +HGI+ Sbjct: 1 MDFVAIDVET--ANEQRSSICSIALLKFQDNKMRDAIY-THINPET-YFSSINTSIHGIS 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + D P + F N +AHN FD+ + ++ N Sbjct: 57 EEDVMDSPKMYQMHEAIIRFL--DNHIIVAHNTSFDMYALCDSFKKYNLPLPSNQYFCTY 114 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + S + I + H A D+ + + + ++ Sbjct: 115 RLSKDLYNLPSYRLQD---LAEHFDIKNEEYHNAFYDAKVCAKIAYNILKDQDA---NLN 168 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222 + + N + K + EEL+ Sbjct: 169 DLVENQNFKYGVFGQNGFIKKSANKKIELVYNEELN 204 >gi|187734182|ref|YP_001880647.1| exodeoxyribonuclease X [Shigella boydii CDC 3083-94] gi|187431174|gb|ACD10448.1| exodeoxyribonuclease X [Shigella boydii CDC 3083-94] Length = 220 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|116494067|ref|YP_805801.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus casei ATCC 334] gi|191637384|ref|YP_001986550.1| DNA polymerase III, alpha subunit [Lactobacillus casei BL23] gi|227533296|ref|ZP_03963345.1| DNA polymerase III, epsilon subunit like 3'-5' exonuclease [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|116104217|gb|ABJ69359.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus casei ATCC 334] gi|190711686|emb|CAQ65692.1| DNA polymerase III, alpha subunit [Lactobacillus casei BL23] gi|227189092|gb|EEI69159.1| DNA polymerase III, epsilon subunit like 3'-5' exonuclease [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|327381428|gb|AEA52904.1| DNA polymerase III alpha subunit [Lactobacillus casei LC2W] gi|327384594|gb|AEA56068.1| DNA polymerase III alpha subunit [Lactobacillus casei BD-II] Length = 172 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 47/129 (36%), Gaps = 5/129 (3%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+ ++ D E +S ++R I+I AV + D F F+ + + ++ + Sbjct: 1 MKEYVIMDTE---FNSTSNRAIQISAVRIRDGLHIADQFNRFIPSPDKFDQLHIIRTSNM 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 PS ++ + + + + D G I ++ + + ID Sbjct: 58 RYSDYLALPSLQQTVRDYVAWMRTTIDI-VGWSIEGDAGRIRETFKKGSHGIPKNWKFID 116 Query: 126 TLSIARRKH 134 I +++ Sbjct: 117 IADIVEKRY 125 >gi|323174733|gb|EFZ60349.1| exonuclease family protein [Escherichia coli LT-68] Length = 220 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYRTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|224584057|ref|YP_002637855.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468584|gb|ACN46414.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 257 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 67/177 (37%), Gaps = 13/177 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQPEALAFNG 79 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A +AHNA FD F+ A +R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + A + L+ C G+ H AL D+ + ++ + Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCE 196 >gi|82543665|ref|YP_407612.1| exodeoxyribonuclease X [Shigella boydii Sb227] gi|81245076|gb|ABB65784.1| conserved hypothetical protein [Shigella boydii Sb227] gi|320177515|gb|EFW52509.1| Exodeoxyribonuclease X [Shigella dysenteriae CDC 74-1112] gi|320183242|gb|EFW58099.1| Exodeoxyribonuclease X [Shigella flexneri CDC 796-83] gi|332096685|gb|EGJ01676.1| exonuclease family protein [Shigella boydii 3594-74] Length = 220 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|307172626|gb|EFN63985.1| hypothetical protein EAG_09598 [Camponotus floridanus] Length = 292 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 7/44 (15%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50 M I+FD+ETTG N II+I A + + + F V++ P Sbjct: 1 MTAIIFDLETTGFGP-NAEIIQIAA-KYHN-----QEFNVYIFP 37 >gi|300938801|ref|ZP_07153512.1| exonuclease [Escherichia coli MS 21-1] gi|300456266|gb|EFK19759.1| exonuclease [Escherichia coli MS 21-1] Length = 220 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDIIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|16129797|ref|NP_416358.1| DNA exonuclease X [Escherichia coli str. K-12 substr. MG1655] gi|74311833|ref|YP_310252.1| exodeoxyribonuclease X [Shigella sonnei Ss046] gi|82776429|ref|YP_402778.1| exodeoxyribonuclease X [Shigella dysenteriae Sd197] gi|89108684|ref|AP_002464.1| DNA exonuclease X [Escherichia coli str. K-12 substr. W3110] gi|91211067|ref|YP_541053.1| exodeoxyribonuclease X [Escherichia coli UTI89] gi|110641962|ref|YP_669692.1| exodeoxyribonuclease X [Escherichia coli 536] gi|117623997|ref|YP_852910.1| exodeoxyribonuclease X [Escherichia coli APEC O1] gi|157159299|ref|YP_001463146.1| exodeoxyribonuclease X [Escherichia coli E24377A] gi|161486210|ref|NP_754148.2| exodeoxyribonuclease X [Escherichia coli CFT073] gi|170081500|ref|YP_001730820.1| DNA exonuclease X [Escherichia coli str. K-12 substr. DH10B] gi|170681411|ref|YP_001743401.1| exodeoxyribonuclease X [Escherichia coli SMS-3-5] gi|188495324|ref|ZP_03002594.1| exodeoxyribonuclease X [Escherichia coli 53638] gi|191168492|ref|ZP_03030279.1| exodeoxyribonuclease X [Escherichia coli B7A] gi|191172968|ref|ZP_03034502.1| exodeoxyribonuclease X [Escherichia coli F11] gi|193066046|ref|ZP_03047103.1| exodeoxyribonuclease X [Escherichia coli E22] gi|194429668|ref|ZP_03062186.1| exodeoxyribonuclease X [Escherichia coli B171] gi|194439062|ref|ZP_03071145.1| exodeoxyribonuclease X [Escherichia coli 101-1] gi|209919210|ref|YP_002293294.1| exodeoxyribonuclease X [Escherichia coli SE11] gi|218554418|ref|YP_002387331.1| exodeoxyribonuclease X [Escherichia coli IAI1] gi|218558708|ref|YP_002391621.1| exodeoxyribonuclease X [Escherichia coli S88] gi|218689782|ref|YP_002397994.1| exodeoxyribonuclease X [Escherichia coli ED1a] gi|218695410|ref|YP_002403077.1| exodeoxyribonuclease X [Escherichia coli 55989] gi|218699585|ref|YP_002407214.1| exodeoxyribonuclease X [Escherichia coli IAI39] gi|218705343|ref|YP_002412862.1| exodeoxyribonuclease X [Escherichia coli UMN026] gi|227885729|ref|ZP_04003534.1| exodeoxyribonuclease X [Escherichia coli 83972] gi|237705796|ref|ZP_04536277.1| exodeoxyribonuclease X [Escherichia sp. 3_2_53FAA] gi|238901059|ref|YP_002926855.1| DNA exonuclease X [Escherichia coli BW2952] gi|256017967|ref|ZP_05431832.1| exodeoxyribonuclease X [Shigella sp. D9] gi|256022492|ref|ZP_05436357.1| exodeoxyribonuclease X [Escherichia sp. 4_1_40B] gi|260844189|ref|YP_003221967.1| DNA exonuclease X [Escherichia coli O103:H2 str. 12009] gi|260855770|ref|YP_003229661.1| DNA exonuclease X [Escherichia coli O26:H11 str. 11368] gi|260868365|ref|YP_003234767.1| DNA exonuclease X [Escherichia coli O111:H- str. 11128] gi|291283026|ref|YP_003499844.1| Exodeoxyribonuclease 10 [Escherichia coli O55:H7 str. CB9615] gi|293405339|ref|ZP_06649331.1| exodeoxyribonuclease X [Escherichia coli FVEC1412] gi|293410154|ref|ZP_06653730.1| conserved hypothetical protein [Escherichia coli B354] gi|293415159|ref|ZP_06657802.1| exodeoxyribonuclease X [Escherichia coli B185] gi|293446216|ref|ZP_06662638.1| exodeoxyribonuclease X [Escherichia coli B088] gi|298380980|ref|ZP_06990579.1| exodeoxyribonuclease X [Escherichia coli FVEC1302] gi|300816266|ref|ZP_07096488.1| exonuclease [Escherichia coli MS 107-1] gi|300824216|ref|ZP_07104334.1| exonuclease [Escherichia coli MS 119-7] gi|300899088|ref|ZP_07117373.1| exonuclease [Escherichia coli MS 198-1] gi|300917583|ref|ZP_07134236.1| exonuclease [Escherichia coli MS 115-1] gi|300924914|ref|ZP_07140845.1| exonuclease [Escherichia coli MS 182-1] gi|300928872|ref|ZP_07144378.1| exonuclease [Escherichia coli MS 187-1] gi|300951460|ref|ZP_07165297.1| exonuclease [Escherichia coli MS 116-1] gi|300956649|ref|ZP_07168925.1| exonuclease [Escherichia coli MS 175-1] gi|300982052|ref|ZP_07175871.1| exonuclease [Escherichia coli MS 200-1] gi|300994204|ref|ZP_07180761.1| exonuclease [Escherichia coli MS 45-1] gi|301025418|ref|ZP_07188970.1| exonuclease [Escherichia coli MS 196-1] gi|301050807|ref|ZP_07197661.1| exonuclease [Escherichia coli MS 185-1] gi|301327607|ref|ZP_07220824.1| exonuclease [Escherichia coli MS 78-1] gi|306814328|ref|ZP_07448494.1| exodeoxyribonuclease X [Escherichia coli NC101] gi|307138504|ref|ZP_07497860.1| exodeoxyribonuclease X [Escherichia coli H736] gi|307314078|ref|ZP_07593690.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W] gi|309789238|ref|ZP_07683831.1| exonuclease family protein [Shigella dysenteriae 1617] gi|309794224|ref|ZP_07688648.1| exonuclease [Escherichia coli MS 145-7] gi|312969882|ref|ZP_07784065.1| exonuclease family protein [Escherichia coli 1827-70] gi|331642455|ref|ZP_08343590.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H736] gi|331653250|ref|ZP_08354255.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli M718] gi|331668536|ref|ZP_08369384.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA271] gi|331673376|ref|ZP_08374144.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA280] gi|331677723|ref|ZP_08378398.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H591] gi|331683348|ref|ZP_08383949.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H299] gi|332279002|ref|ZP_08391415.1| exodeoxyribonuclease X [Shigella sp. D9] gi|84027958|sp|P0AEK1|EXOX_ECOL6 RecName: Full=Exodeoxyribonuclease 10; AltName: Full=Exodeoxyribonuclease X; Short=Exo X; Short=Exonuclease X gi|84027959|sp|P0AEK0|EXOX_ECOLI RecName: Full=Exodeoxyribonuclease 10; AltName: Full=Exodeoxyribonuclease X; Short=Exo X; Short=Exonuclease X gi|6166471|gb|AAF04847.1|AF194116_1 exonuclease X [Escherichia coli] gi|1788149|gb|AAC74914.1| DNA exonuclease X [Escherichia coli str. K-12 substr. MG1655] gi|73855310|gb|AAZ88017.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81240577|gb|ABB61287.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|85675148|dbj|BAE76547.1| DNA exonuclease X [Escherichia coli str. K12 substr. W3110] gi|91072641|gb|ABE07522.1| exodeoxyribonuclease X [Escherichia coli UTI89] gi|110343554|gb|ABG69791.1| exodeoxyribonuclease X [Escherichia coli 536] gi|115513121|gb|ABJ01196.1| exodeoxyribonuclease X [Escherichia coli APEC O1] gi|157081329|gb|ABV21037.1| exodeoxyribonuclease X [Escherichia coli E24377A] gi|169889335|gb|ACB03042.1| DNA exonuclease X [Escherichia coli str. K-12 substr. DH10B] gi|170519129|gb|ACB17307.1| exodeoxyribonuclease X [Escherichia coli SMS-3-5] gi|188490523|gb|EDU65626.1| exodeoxyribonuclease X [Escherichia coli 53638] gi|190901445|gb|EDV61207.1| exodeoxyribonuclease X [Escherichia coli B7A] gi|190906679|gb|EDV66284.1| exodeoxyribonuclease X [Escherichia coli F11] gi|192926283|gb|EDV80920.1| exodeoxyribonuclease X [Escherichia coli E22] gi|194412310|gb|EDX28614.1| exodeoxyribonuclease X [Escherichia coli B171] gi|194422021|gb|EDX38025.1| exodeoxyribonuclease X [Escherichia coli 101-1] gi|209767638|gb|ACI82131.1| exonuclease X [Escherichia coli] gi|209767644|gb|ACI82134.1| exonuclease X [Escherichia coli] gi|209912469|dbj|BAG77543.1| DNA exonuclease X [Escherichia coli SE11] gi|218352142|emb|CAU97881.1| DNA exonuclease X [Escherichia coli 55989] gi|218361186|emb|CAQ98770.1| DNA exonuclease X [Escherichia coli IAI1] gi|218365477|emb|CAR03204.1| DNA exonuclease X [Escherichia coli S88] gi|218369571|emb|CAR17340.1| DNA exonuclease X [Escherichia coli IAI39] gi|218427346|emb|CAR08241.2| DNA exonuclease X [Escherichia coli ED1a] gi|218432440|emb|CAR13333.1| DNA exonuclease X [Escherichia coli UMN026] gi|222033593|emb|CAP76334.1| exodeoxyribonuclease 10 [Escherichia coli LF82] gi|226900553|gb|EEH86812.1| exodeoxyribonuclease X [Escherichia sp. 3_2_53FAA] gi|227837302|gb|EEJ47768.1| exodeoxyribonuclease X [Escherichia coli 83972] gi|238860815|gb|ACR62813.1| DNA exonuclease X [Escherichia coli BW2952] gi|257754419|dbj|BAI25921.1| DNA exonuclease X [Escherichia coli O26:H11 str. 11368] gi|257759336|dbj|BAI30833.1| DNA exonuclease X [Escherichia coli O103:H2 str. 12009] gi|257764721|dbj|BAI36216.1| DNA exonuclease X [Escherichia coli O111:H- str. 11128] gi|260449035|gb|ACX39457.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli DH1] gi|281178912|dbj|BAI55242.1| DNA exonuclease X [Escherichia coli SE15] gi|284921762|emb|CBG34835.1| exodeoxyribonuclease X [Escherichia coli 042] gi|290762899|gb|ADD56860.1| Exodeoxyribonuclease 10 [Escherichia coli O55:H7 str. CB9615] gi|291323046|gb|EFE62474.1| exodeoxyribonuclease X [Escherichia coli B088] gi|291427547|gb|EFF00574.1| exodeoxyribonuclease X [Escherichia coli FVEC1412] gi|291432807|gb|EFF05786.1| exodeoxyribonuclease X [Escherichia coli B185] gi|291470622|gb|EFF13106.1| conserved hypothetical protein [Escherichia coli B354] gi|294490108|gb|ADE88864.1| exodeoxyribonuclease X [Escherichia coli IHE3034] gi|298278422|gb|EFI19936.1| exodeoxyribonuclease X [Escherichia coli FVEC1302] gi|299880094|gb|EFI88305.1| exonuclease [Escherichia coli MS 196-1] gi|300297496|gb|EFJ53881.1| exonuclease [Escherichia coli MS 185-1] gi|300307354|gb|EFJ61874.1| exonuclease [Escherichia coli MS 200-1] gi|300316527|gb|EFJ66311.1| exonuclease [Escherichia coli MS 175-1] gi|300357297|gb|EFJ73167.1| exonuclease [Escherichia coli MS 198-1] gi|300406332|gb|EFJ89870.1| exonuclease [Escherichia coli MS 45-1] gi|300415183|gb|EFJ98493.1| exonuclease [Escherichia coli MS 115-1] gi|300418932|gb|EFK02243.1| exonuclease [Escherichia coli MS 182-1] gi|300449289|gb|EFK12909.1| exonuclease [Escherichia coli MS 116-1] gi|300463162|gb|EFK26655.1| exonuclease [Escherichia coli MS 187-1] gi|300523287|gb|EFK44356.1| exonuclease [Escherichia coli MS 119-7] gi|300530956|gb|EFK52018.1| exonuclease [Escherichia coli MS 107-1] gi|300845856|gb|EFK73616.1| exonuclease [Escherichia coli MS 78-1] gi|305852487|gb|EFM52938.1| exodeoxyribonuclease X [Escherichia coli NC101] gi|306906216|gb|EFN36733.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W] gi|307553862|gb|ADN46637.1| exodeoxyribonuclease X [Escherichia coli ABU 83972] gi|307626675|gb|ADN70979.1| exodeoxyribonuclease X [Escherichia coli UM146] gi|308122129|gb|EFO59391.1| exonuclease [Escherichia coli MS 145-7] gi|308922992|gb|EFP68506.1| exonuclease family protein [Shigella dysenteriae 1617] gi|310338167|gb|EFQ03256.1| exonuclease family protein [Escherichia coli 1827-70] gi|312946443|gb|ADR27270.1| exodeoxyribonuclease X [Escherichia coli O83:H1 str. NRG 857C] gi|315061147|gb|ADT75474.1| DNA exonuclease X [Escherichia coli W] gi|315136487|dbj|BAJ43646.1| exodeoxyribonuclease 10 [Escherichia coli DH1] gi|315286537|gb|EFU45972.1| exonuclease [Escherichia coli MS 110-3] gi|315290373|gb|EFU49749.1| exonuclease [Escherichia coli MS 153-1] gi|320194441|gb|EFW69072.1| Exodeoxyribonuclease X [Escherichia coli WV_060327] gi|320198024|gb|EFW72632.1| Exodeoxyribonuclease X [Escherichia coli EC4100B] gi|320641696|gb|EFX11084.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. G5101] gi|320647056|gb|EFX15889.1| exodeoxyribonuclease X [Escherichia coli O157:H- str. 493-89] gi|320652339|gb|EFX20637.1| exodeoxyribonuclease X [Escherichia coli O157:H- str. H 2687] gi|320657940|gb|EFX25702.1| exodeoxyribonuclease X [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658513|gb|EFX26207.1| exodeoxyribonuclease X [Escherichia coli O55:H7 str. USDA 5905] gi|320668411|gb|EFX35238.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. LSU-61] gi|323152600|gb|EFZ38877.1| exonuclease family protein [Escherichia coli EPECa14] gi|323158672|gb|EFZ44686.1| exonuclease family protein [Escherichia coli E128010] gi|323166600|gb|EFZ52360.1| exonuclease family protein [Shigella sonnei 53G] gi|323180624|gb|EFZ66169.1| exonuclease family protein [Escherichia coli 1180] gi|323186407|gb|EFZ71755.1| exonuclease family protein [Escherichia coli 1357] gi|323378276|gb|ADX50544.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli KO11] gi|323940489|gb|EGB36680.1| exonuclease [Escherichia coli E482] gi|323948271|gb|EGB44259.1| exonuclease [Escherichia coli H120] gi|323952346|gb|EGB48219.1| exonuclease [Escherichia coli H252] gi|323956475|gb|EGB52217.1| exonuclease [Escherichia coli H263] gi|323968612|gb|EGB64018.1| exonuclease [Escherichia coli M863] gi|323972649|gb|EGB67852.1| exonuclease [Escherichia coli TA007] gi|323977972|gb|EGB73058.1| exonuclease [Escherichia coli TW10509] gi|324007199|gb|EGB76418.1| exonuclease [Escherichia coli MS 57-2] gi|324012816|gb|EGB82035.1| exonuclease [Escherichia coli MS 60-1] gi|324018034|gb|EGB87253.1| exonuclease [Escherichia coli MS 117-3] gi|324118904|gb|EGC12793.1| exonuclease [Escherichia coli E1167] gi|327252967|gb|EGE64621.1| exonuclease family protein [Escherichia coli STEC_7v] gi|331039253|gb|EGI11473.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H736] gi|331049348|gb|EGI21420.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli M718] gi|331063730|gb|EGI35641.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA271] gi|331069574|gb|EGI40961.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA280] gi|331074183|gb|EGI45503.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H591] gi|331079563|gb|EGI50760.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H299] gi|332101354|gb|EGJ04700.1| exodeoxyribonuclease X [Shigella sp. D9] gi|332343569|gb|AEE56903.1| exonuclease [Escherichia coli UMNK88] Length = 220 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|317049763|ref|YP_004117411.1| exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b] gi|316951380|gb|ADU70855.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b] Length = 182 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/30 (50%), Positives = 18/30 (60%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M N+ I D+E TGLD + DRIIEI Sbjct: 1 MTAGNENNLIWIDLEMTGLDPERDRIIEIA 30 >gi|157414745|ref|YP_001482001.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni 81116] gi|157385709|gb|ABV52024.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 81116] gi|307747384|gb|ADN90654.1| DNA polymerase III, epsilon subunit [Campylobacter jejuni subsp. jejuni M1] gi|315931109|gb|EFV10083.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 253 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 6/122 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIE+TG I+EIGAV++ + + R FQ F+ ++ +L GIT E + Sbjct: 74 IVDIESTGG-VSKGEILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYEMV 129 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ PS + + S+F +++ ++AHN +FD FI+ L L RI Sbjct: 130 ENAPSLAKVLSDF--RLFLKDSIFVAHNVRFDYSFISKALNECGFGILLNRRICTIEFAQ 187 Query: 131 RR 132 Sbjct: 188 CC 189 >gi|152998334|ref|YP_001343169.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1] gi|150839258|gb|ABR73234.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1] Length = 236 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 15/29 (51%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK 39 D+ETTGLD D II +G + L Sbjct: 53 ALDLETTGLDPSQDEIISLGLIPLNHKII 81 >gi|51594770|ref|YP_068961.1| oligoribonuclease [Yersinia pseudotuberculosis IP 32953] gi|153949964|ref|YP_001402615.1| oligoribonuclease [Yersinia pseudotuberculosis IP 31758] gi|229597226|ref|YP_001722527.2| oligoribonuclease [Yersinia pseudotuberculosis YPIII] gi|229597243|ref|YP_001870889.2| oligoribonuclease [Yersinia pseudotuberculosis PB1/+] gi|59798016|sp|Q66FC2|ORN_YERPS RecName: Full=Oligoribonuclease gi|166918641|sp|A7FMY7|ORN_YERP3 RecName: Full=Oligoribonuclease gi|51588052|emb|CAH19658.1| possible oligoribonuclease [Yersinia pseudotuberculosis IP 32953] gi|152961459|gb|ABS48920.1| oligoribonuclease [Yersinia pseudotuberculosis IP 31758] Length = 181 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + +N+ I D+E TGLD + DRIIEI Sbjct: 1 MAENQNNLIWIDLEMTGLDPERDRIIEIA 29 >gi|332076082|gb|EGI86548.1| exonuclease family protein [Streptococcus pneumoniae GA41301] Length = 140 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 5/103 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ R +V D+E T SK +II++G V + D + + P+ + Sbjct: 1 MKTIGNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIV-DHYTTDVNPH-EPLDAHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 L G+TD+ L P FS + + +D + ++AHN +FD Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLVED--GIFVAHNVQFDAN 98 >gi|323186850|gb|EFZ72169.1| exonuclease family protein [Escherichia coli RN587/1] Length = 220 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|308177924|ref|YP_003917330.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] gi|307745387|emb|CBT76359.1| putative DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] Length = 227 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 2/213 (0%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K I FD+ETTG+D+ RI+ V L + + P A Sbjct: 1 MTEWHKGLAIGFDLETTGVDTNTARIVTASVVLLDAEGNVVNNREWLVDPGVEIPEAAAA 60 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFN--EQNAEWIAHNAKFDVGFINAELQRINKDPL 118 T++ + E + + A +A NA +D + +E R + +P Sbjct: 61 VHGISTEKARAEGAPAKQSVEEILNLLKFASEQAPIVAFNASYDFSVLYSEAVRYDLEPF 120 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 P +ID I ++ + + + H +L D+ +V ++ Sbjct: 121 FPGNVIDPFIIDKQVDRFRKGKRTLAAACEFYGVVLENAHTSLADAVACVEVARQLGERY 180 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 Q+ K+ + R Sbjct: 181 PQLQVDPMVLHGWQIGWAKEQAESFQAYLRKTK 213 >gi|212211731|ref|YP_002302667.1| ribonuclease T [Coxiella burnetii CbuG_Q212] gi|212010141|gb|ACJ17522.1| ribonuclease T [Coxiella burnetii CbuG_Q212] Length = 221 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 63/181 (34%), Gaps = 13/181 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIET GL+ + ++EI AV + + F + P G P +L++ Sbjct: 21 VVVDIETGGLEPLKNPLLEIAAVLVEVNKEGQLCQGELFACHVLPFEGAALDPASLEITR 80 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A + HNA FD+ FI A ++R Sbjct: 81 IDPYHPFRFAVDEKKALQDLFAFVEKAVNVAQCRRAVLVGHNAHFDLTFIQAAMKRCKLK 140 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L + + + H A+ D+ ++++ K+ Sbjct: 141 KSPFHAFTCFDTATLAAIVFGKTVLAKALRAANLPFDKKEAHSAIYDAKCAAELFCKITN 200 Query: 177 G 177 Sbjct: 201 Q 201 >gi|125624796|ref|YP_001033279.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp. cremoris MG1363] gi|124493604|emb|CAL98589.1| Probable ATP-dependent helicase dinG homolog [Lactococcus lactis subsp. cremoris MG1363] gi|300071596|gb|ADJ60996.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp. cremoris NZ9000] Length = 791 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 21/225 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+E T S ++II+IG + T+ + P+ +L G++D Sbjct: 3 RYAVVDLEATDAHSSENKIIQIGIALVEGGKIV-ETYSTEVNPHEPLLP-RISELTGLSD 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + LK P FS + SE + + ++AHNA+FD G + + + R+ Sbjct: 61 KQLKSAPDFSEVASEVRKLLTD--SVFVAHNARFDYGLLEKSFLNAGLEFNEMLRVDTVD 118 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------------- 172 + L +L ++ + H H A+ D++ +++ I Sbjct: 119 LARVFYPTFEKYGLEALSEKLDLAHDHP--HAAVSDAYATAELLIRIEEKIQKLPRSVLE 176 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 +++ + F K+ + K ++ + + Sbjct: 177 ELLRHSDNLLFESKSFLQEQLDKTKIRPAAFKVVHNIATRKFKSS 221 >gi|29654993|ref|NP_820685.1| ribonuclease T [Coxiella burnetii RSA 493] gi|153207536|ref|ZP_01946219.1| ribonuclease T [Coxiella burnetii 'MSU Goat Q177'] gi|154706868|ref|YP_001423724.1| ribonuclease T [Coxiella burnetii Dugway 5J108-111] gi|165918353|ref|ZP_02218439.1| ribonuclease T [Coxiella burnetii RSA 334] gi|212217974|ref|YP_002304761.1| ribonuclease T [Coxiella burnetii CbuK_Q154] gi|29542262|gb|AAO91199.1| ribonuclease T [Coxiella burnetii RSA 493] gi|120576504|gb|EAX33128.1| ribonuclease T [Coxiella burnetii 'MSU Goat Q177'] gi|154356154|gb|ABS77616.1| ribonuclease T [Coxiella burnetii Dugway 5J108-111] gi|165918003|gb|EDR36607.1| ribonuclease T [Coxiella burnetii RSA 334] gi|212012236|gb|ACJ19616.1| ribonuclease T [Coxiella burnetii CbuK_Q154] Length = 224 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 63/181 (34%), Gaps = 13/181 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIET GL+ + ++EI AV + + F + P G P +L++ Sbjct: 21 VVVDIETGGLEPLKNPLLEIAAVLVEVNKEGQLCQGELFACHVLPFEGAALDPASLEITR 80 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + + A + HNA FD+ FI A ++R Sbjct: 81 IDPYHPFRFAVDEKKALQDLFAFVEKAVNVAQCRRAVLVGHNAHFDLTFIQAAMKRCKLK 140 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L + + + H A+ D+ ++++ K+ Sbjct: 141 KSPFHAFTCFDTATLAAIVFGKTVLAKALRAANLPFDKKEAHSAIYDAKCAAELFCKITN 200 Query: 177 G 177 Sbjct: 201 Q 201 >gi|116512711|ref|YP_811618.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11] gi|116108365|gb|ABJ73505.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11] Length = 791 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 21/225 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+E T S ++II+IG + T+ + P+ +L G++D Sbjct: 3 RYAVVDLEATDAHSSENKIIQIGIALVEGGKIV-ETYSTEVNPHEPLLP-RISELTGLSD 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + LK P FS + SE + + ++AHNA+FD G + + + R+ Sbjct: 61 KQLKSAPDFSEVASEVRKLLTD--SVFVAHNARFDYGLLEKSFLNAGLEFNEMLRVDTVD 118 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------------- 172 + L +L ++ + H H A+ D++ +++ I Sbjct: 119 LARVFYPTFEKYGLEALSEKLDLAHDHP--HAAVSDAYATAELLIRIEEKIQKLPRSVLE 176 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 +++ + F K+ + K ++ + + Sbjct: 177 ELLRHSDNLLFESKSFLQEQLDKTKIRPAAFKVVHNIATRKFKSS 221 >gi|322389907|ref|ZP_08063447.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus parasanguinis ATCC 903] gi|321143343|gb|EFX38781.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus parasanguinis ATCC 903] Length = 836 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 83/187 (44%), Gaps = 13/187 (6%) Query: 1 MIRKNKMRKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M R+ + + + D+E T G ++K II++G V + D ++++ + P+ R Sbjct: 20 MTRQKR-KYAIVDLEATSAGSNAK---IIQVGIVIIEDGR-IRQSYETDVNPHER-LDEH 73 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 +L G+TD LK P F+ + E ++ + A ++AHN KFD + + Sbjct: 74 IKQLTGLTDARLKKAPEFAQVAKEIFELIED--AVFVAHNVKFDANLLA--EALFWEGFE 129 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + IDT+ +++ +P+ + I H AL D+ + + +K+ Sbjct: 130 LTTPRIDTVELSQIFYPTLERYNL-GALAAELEIELHHAHSALADAMATAQLLLKLREKI 188 Query: 179 SQINFGF 185 + + G Sbjct: 189 ASLPRGL 195 >gi|156392522|ref|XP_001636097.1| predicted protein [Nematostella vectensis] gi|156223197|gb|EDO44034.1| predicted protein [Nematostella vectensis] Length = 461 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLHGI 65 ++FD ETTGLD+ ND II++ S+ ++ P GR EA HGI Sbjct: 156 FVMFDTETTGLDTSNDVIIQLACA-----SENGDPLHSRYMFPGGRSIGSEATNAHGI 208 >gi|238796040|ref|ZP_04639551.1| Oligoribonuclease [Yersinia mollaretii ATCC 43969] gi|238719985|gb|EEQ11790.1| Oligoribonuclease [Yersinia mollaretii ATCC 43969] Length = 181 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + +N+ I D+E TGLD + DRIIEI Sbjct: 1 MAENQNNLIWIDLEMTGLDPERDRIIEIA 29 >gi|330981566|gb|EGH79669.1| ribonuclease T [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 193 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 13/185 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGI 65 V D+ET G +S D ++EI AV + + T+ + P G AL+ GI Sbjct: 2 VVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTGI 61 Query: 66 TDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + + + A + HNA FD+GF+NA + R++ Sbjct: 62 KLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMKR 121 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + L C+ GI R H A D+ ++++ ++ Sbjct: 122 NPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVNR 181 Query: 178 GSQIN 182 ++ Sbjct: 182 WKEMG 186 >gi|126330776|ref|XP_001373310.1| PREDICTED: similar to Three prime histone mRNA exonuclease 1 [Monodelphis domestica] Length = 432 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 16/199 (8%) Query: 11 VFDIETT---GLDSK-NDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 V D E T G + IIE V L ++ + TFQ ++ P S + L G Sbjct: 215 VIDFEATCEEGNPPEFTHEIIEFPIVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTG 274 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + ++ + + + + + Sbjct: 275 ITQDMVDRAATFPQVLRNVVEWMKLKELGTTYKYSILTDGSWDMSKFLNIQCQISRLRYP 334 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P ++ L + ++ G++ R H L DS ++ + ++M+ Sbjct: 335 SFAKKWINIRKSYGNFYKVPRNQTKLTIMLEKLGMSYDGRP-HSGLDDSKNIARIAVRML 393 Query: 176 VGGSQINFGFKTNEDRFFK 194 G ++ K + + Sbjct: 394 RDGCELRVNEKMHGGQLTS 412 >gi|283785581|ref|YP_003365446.1| exodeoxyribonuclease X [Citrobacter rodentium ICC168] gi|282949035|emb|CBG88638.1| exodeoxyribonuclease X [Citrobacter rodentium ICC168] Length = 220 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVVDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDIIPHYY-----GSEWYVAHNASFDSRVLPEMPGEWICT-------MKLSRRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T + H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKSRKLNVQTPAGLHHHRALYDCYITAALLIDIMNT 153 >gi|225021962|ref|ZP_03711154.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii ATCC 33806] gi|224945248|gb|EEG26457.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii ATCC 33806] Length = 456 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 9/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN--GRKNSPEALKLHGIT 66 + D+ET ++ I +IG V + D + + + P +++HGIT Sbjct: 113 FVGVDVET--ANADWGSICQIGVVRVTDGMQVDSH-EWLCQPPAGIDHFDEGNIRIHGIT 169 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P F+++F E + + +AHNA+FD+ + Sbjct: 170 PDMVTDAPDFATVFPEVVAYVAD--QVLVAHNAQFDLTAFSRACHATGTPVPHWKFACSL 227 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + K + + L + + G+ + H A+ D+ + +++++ + Sbjct: 228 AASRAAKLGITSHRLPVVAQHLGVE--LDNHHDAVADARACAGIFVQLALRAHATGDIET 285 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F I + + P T Sbjct: 286 VFTTLGFSLGDLNTERIYPVLSNPPTVTVA 315 >gi|221234528|ref|YP_002516964.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus NA1000] gi|220963700|gb|ACL95056.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus NA1000] Length = 209 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 62/208 (29%), Gaps = 7/208 (3%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +M+ I D ET + IG + D + R ++ P G + + + H Sbjct: 5 CRRMKVIAIDFET--ASEQRASPCSIGLAWIEDG-EVARVEHHYIRPPGNRFAAFNMAFH 61 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI E + D + + A +AHNA FD+ I + + + Sbjct: 62 GIRPEHVADADEWPDVLERIRPELEG--ALVLAHNASFDISVIRRTCEHYDVPAPGFDYL 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS--HLLSDVYIKMMVGGSQI 181 + LN +C G+ +H L+ + + + Sbjct: 120 CTVQVARSVWPELPSHKLNVVCGHLGVDFAHHDAAADAYACGRVALAATGLNALSDIRAL 179 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD 209 R + + + +R Sbjct: 180 PQRLGMTPGRLDPDSYRPSRIAAAPRRR 207 >gi|153870628|ref|ZP_01999989.1| ribonuclease T [Beggiatoa sp. PS] gi|152072905|gb|EDN70010.1| ribonuclease T [Beggiatoa sp. PS] Length = 212 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34 +V D+ET G + + D ++EI AV L Sbjct: 19 VVVDVETAGFNPERDALLEIAAVIL 43 >gi|83645626|ref|YP_434061.1| putative exonuclease [Hahella chejuensis KCTC 2396] gi|83633669|gb|ABC29636.1| putative exonuclease [Hahella chejuensis KCTC 2396] Length = 176 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 62/181 (34%), Gaps = 14/181 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ETT LD ++EI + + T + + P G S A +H I+ Sbjct: 1 MDPLFLDTETTNLD-DTAEVVEIA---VTNRHGT-KLLNTLVKPQG-PMSAAAQNVHQIS 54 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + LK PS+ + + + I NA FDV + P+ + + Sbjct: 55 ELELKGAPSWPITYPRVYKLLYK--RPVIIFNADFDVRILRQTCNAWALPPIPFTPLCAM 112 Query: 127 LSIARRKHPS------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 A ++ G + S H A D+ + S++ M G Sbjct: 113 RLYAEFHGQWSEKGQFKYQSQARALEQIGHPAAATSLHRAAYDAQMTSEIIYTMATGIKP 172 Query: 181 I 181 + Sbjct: 173 L 173 >gi|29346841|ref|NP_810344.1| putative DNA polymerase III epsilon chain [Bacteroides thetaiotaomicron VPI-5482] gi|298386512|ref|ZP_06996068.1| exonuclease [Bacteroides sp. 1_1_14] gi|29338738|gb|AAO76538.1| putative DNA polymerase III epsilon chain [Bacteroides thetaiotaomicron VPI-5482] gi|298260889|gb|EFI03757.1| exonuclease [Bacteroides sp. 1_1_14] Length = 180 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 59/182 (32%), Gaps = 7/182 (3%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+ D ET + K + +G V + + + + + P + +HG+ Sbjct: 1 MKDFAAIDFET--ANGKRTSVCSVGVVIVRNGKIVKKIY-RLIRPCPNYYTQWTTAVHGL 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T ++ F +++E + +AHN+ FD G + A + + Sbjct: 58 TYADTEEAEDFPDVWAEIKPLIDG--LPLVAHNSPFDEGCLKAVHELYEMTYPNYKFYCT 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + + N + H AL D+ + + + ++ + Sbjct: 116 CRTSRKVFGKELPNHQLHTVAAR-CGYDLTNHHHALADAEACAQIALLIIPEPKKPKVDL 174 Query: 186 KT 187 T Sbjct: 175 HT 176 >gi|332160015|ref|YP_004296592.1| oligoribonuclease [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607428|emb|CBY28926.1| 3'-to-5' oligoribonuclease (orn) [Yersinia enterocolitica subsp. palearctica Y11] gi|325664245|gb|ADZ40889.1| oligoribonuclease [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862350|emb|CBX72509.1| oligoribonuclease [Yersinia enterocolitica W22703] Length = 181 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + +N+ I D+E TGLD + DRIIEI Sbjct: 1 MAENQNNLIWIDLEMTGLDPEKDRIIEIA 29 >gi|300767630|ref|ZP_07077540.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494615|gb|EFK29773.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 182 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 7/165 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ET ++K D + + + ++ F + P +++HGI + Sbjct: 6 NFVAMDFET--ANAKRDSACSLALTVVRNNQISDE-FYTLIKPES-DFFWRNVQIHGIHE 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P F + F +++ IAHNA FD+G + L + + Sbjct: 62 ADVADAPKF-PDVWQHIAPFFQRDRLVIAHNAPFDIGVLRNTLAHYGISAPEYLSMDTVK 120 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + R + L+++C+ I + H AL DS +++ + Sbjct: 121 TSQRFYPELPNHKLDTVCQAL--DIDLQHHHNALDDSLACANILL 163 >gi|259507628|ref|ZP_05750528.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] gi|259164807|gb|EEW49361.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] Length = 494 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 75/204 (36%), Gaps = 9/204 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEALKLHGIT 66 + FD+ET + I +IG V + + + T F P P + +HGIT Sbjct: 126 FVAFDVET--ANDDWGSICQIGLVRYENGVEVDST-SWFCTPPEPLNFFEPANIAIHGIT 182 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + +P+F+ + + DF + +AHNA+FD I+ + + Sbjct: 183 AEQVAGEPAFAEVLPKMVDFVGD--LPLVAHNAQFDFTAISRACAAAGIEAPVFNFGCSL 240 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + + L ++ + G+ R H A D+ + + I++ + Sbjct: 241 ALSRSSRLKFHNHRLPTVAQALGVE--LRKHHDATEDARACAGITIELARRQNHQGGFID 298 Query: 187 TNEDRFFKEEKKTVPNISLLKRDK 210 + F + + RD+ Sbjct: 299 FIHSQGFTLGSLDTERVYPVLRDR 322 >gi|25028571|ref|NP_738625.1| putative DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] gi|23493856|dbj|BAC18825.1| putative DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] Length = 569 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 75/204 (36%), Gaps = 9/204 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEALKLHGIT 66 + FD+ET + I +IG V + + + T F P P + +HGIT Sbjct: 201 FVAFDVET--ANDDWGSICQIGLVRYENGVEVDST-SWFCTPPEPLNFFEPANIAIHGIT 257 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + +P+F+ + + DF + +AHNA+FD I+ + + Sbjct: 258 AEQVAGEPAFAEVLPKMVDFVGD--LPLVAHNAQFDFTAISRACAAAGIEAPVFNFGCSL 315 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + + L ++ + G+ R H A D+ + + I++ + Sbjct: 316 ALSRSSRLKFHNHRLPTVAQALGVE--LRKHHDATEDARACAGITIELARRQNHQGGFID 373 Query: 187 TNEDRFFKEEKKTVPNISLLKRDK 210 + F + + RD+ Sbjct: 374 FIHSQGFTLGSLDTERVYPVLRDR 397 >gi|238784781|ref|ZP_04628783.1| Oligoribonuclease [Yersinia bercovieri ATCC 43970] gi|238714294|gb|EEQ06304.1| Oligoribonuclease [Yersinia bercovieri ATCC 43970] Length = 181 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + +N+ I D+E TGLD + DRIIEI Sbjct: 1 MAENQNNLIWIDLEMTGLDPERDRIIEIA 29 >gi|307128611|ref|YP_003880641.1| DNA polymerase III subunit alpha [Candidatus Sulcia muelleri CARI] gi|306483073|gb|ADM89943.1| DNA polymerase III, alpha subunit [Candidatus Sulcia muelleri CARI] Length = 1379 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 66/186 (35%), Gaps = 16/186 (8%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 I+FD ETTGL + R+++I + K + P + Sbjct: 2 YIIFDTETTGLPKDYNAPINNIINWPRLVKISWGLYDEKFKLIELKDYIIKPECYEIPFL 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + K+HGI+ ++ +K + + ++ + +I HN FD+ I AE RI K Sbjct: 62 STKIHGISTKYAIEKGYKINYVLKKFNKIINKYNFFIGHNVFFDIKIICAEFFRIKKKIF 121 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCK------RYGITISHRSKHGALLDSHLLSDVYI 172 + I + + + + L + H + D S + Sbjct: 122 LYKKKIIDTKEKSINYCAIKIGKDKLKWPTLTELYKKLFNDTFIAHDSKSDVLATSKCFF 181 Query: 173 KMMVGG 178 +++ G Sbjct: 182 ELLRIG 187 >gi|256811514|ref|YP_003128883.1| hypothetical protein Mefer_1580 [Methanocaldococcus fervens AG86] gi|256794714|gb|ACV25383.1| hypothetical protein Mefer_1580 [Methanocaldococcus fervens AG86] Length = 176 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLC 49 M K + DIETTGL+ RI+ IG V + D + + + + Sbjct: 1 MVKAIIDIETTGLNPMEHRIVAIG-VRIGDRTIILMDESEYYLLVN 45 >gi|110835017|ref|YP_693876.1| DNA polymerase III subunit epsilon [Alcanivorax borkumensis SK2] gi|110648128|emb|CAL17604.1| nuclease, putative [Alcanivorax borkumensis SK2] Length = 173 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 17/30 (56%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK 39 + D ETTGLDS+ ++ I AV + + Sbjct: 2 VAIDCETTGLDSRTAELVSIAAVVIKEGRV 31 >gi|215487057|ref|YP_002329488.1| exodeoxyribonuclease X [Escherichia coli O127:H6 str. E2348/69] gi|312967045|ref|ZP_07781263.1| exonuclease family protein [Escherichia coli 2362-75] gi|331647439|ref|ZP_08348531.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli M605] gi|331657890|ref|ZP_08358852.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA206] gi|215265129|emb|CAS09517.1| DNA exonuclease X [Escherichia coli O127:H6 str. E2348/69] gi|312288509|gb|EFR16411.1| exonuclease family protein [Escherichia coli 2362-75] gi|315299931|gb|EFU59169.1| exonuclease [Escherichia coli MS 16-3] gi|330911653|gb|EGH40163.1| exodeoxyribonuclease X [Escherichia coli AA86] gi|331043163|gb|EGI15301.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli M605] gi|331056138|gb|EGI28147.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA206] Length = 220 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L + K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKIRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|194433962|ref|ZP_03066234.1| exodeoxyribonuclease X [Shigella dysenteriae 1012] gi|194417834|gb|EDX33931.1| exodeoxyribonuclease X [Shigella dysenteriae 1012] gi|320182620|gb|EFW57509.1| Exodeoxyribonuclease X [Shigella boydii ATCC 9905] gi|332095285|gb|EGJ00309.1| exonuclease family protein [Shigella dysenteriae 155-74] Length = 220 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|332090017|gb|EGI95117.1| exonuclease family protein [Shigella boydii 5216-82] Length = 220 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|331663335|ref|ZP_08364245.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA143] gi|331059134|gb|EGI31111.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA143] Length = 220 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|239932382|ref|ZP_04689335.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291440749|ref|ZP_06580139.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291343644|gb|EFE70600.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] Length = 241 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ V R + P G A ++HG+T E L Sbjct: 11 AFDTETTGVDVEADRIVSAALVVQDAPGTRPRVTDWLVNP-GVPVPAAATEVHGLTQEHL 69 Query: 71 KDKPSFSSIFSE 82 + + + Sbjct: 70 QRNGRWPAPVMY 81 >gi|126700009|ref|YP_001088906.1| putative DNA polymerase III subunit epsilon [Clostridium difficile 630] gi|254975983|ref|ZP_05272455.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-66c26] gi|255093371|ref|ZP_05322849.1| putative DNA polymerase III, epsilon chain [Clostridium difficile CIP 107932] gi|255101551|ref|ZP_05330528.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-63q42] gi|255307420|ref|ZP_05351591.1| putative DNA polymerase III, epsilon chain [Clostridium difficile ATCC 43255] gi|255315116|ref|ZP_05356699.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-76w55] gi|255517786|ref|ZP_05385462.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-97b34] gi|255650901|ref|ZP_05397803.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-37x79] gi|260683972|ref|YP_003215257.1| putative DNA polymerase III subunit epsilon [Clostridium difficile CD196] gi|260687632|ref|YP_003218766.1| putative DNA polymerase III subunit epsilon [Clostridium difficile R20291] gi|306520788|ref|ZP_07407135.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-32g58] gi|115251446|emb|CAJ69279.1| DNA polymerase III, epsilon subunit [Clostridium difficile] gi|260210135|emb|CBA64288.1| putative DNA polymerase III, epsilon chain [Clostridium difficile CD196] gi|260213649|emb|CBE05485.1| putative DNA polymerase III, epsilon chain [Clostridium difficile R20291] Length = 168 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 71/174 (40%), Gaps = 18/174 (10%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGA------VELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M+ +V D+ETTGLD G + + + + + + P G +S Sbjct: 1 MKEYVVVDLETTGLDPYK------GCEIIEIGITEIKNEQIVKNYSRLIKPKGIISSFIT 54 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 H + ++P + F + ++ AHNAKFD+ F+N L+ ++ +P++ Sbjct: 55 ELTHISNEMVENEEP-LELVLPRFRKYIGDRTII--AHNAKFDLKFLNYYLRMLDLEPIN 111 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L + + L + C Y I + + H A D+ + +++K Sbjct: 112 NYICTVELLKKCKSYKGKNKKLETACAYYNIE--NINAHRADSDTLATAKLFLK 163 >gi|302522606|ref|ZP_07274948.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] gi|302431501|gb|EFL03317.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] Length = 239 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 FD+ETTG D + DRI+ + L T L P G + EA +HGI Sbjct: 11 FDLETTGTDIEQDRIVTAAVIRLDASGAVAHTRTWLLDP-GVEIPAEATAIHGIP 64 >gi|255656369|ref|ZP_05401778.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-23m63] gi|296450182|ref|ZP_06891943.1| epsilon subunit family exonuclease [Clostridium difficile NAP08] gi|296878563|ref|ZP_06902568.1| epsilon subunit family exonuclease [Clostridium difficile NAP07] gi|296260945|gb|EFH07779.1| epsilon subunit family exonuclease [Clostridium difficile NAP08] gi|296430370|gb|EFH16212.1| epsilon subunit family exonuclease [Clostridium difficile NAP07] Length = 168 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 71/174 (40%), Gaps = 18/174 (10%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGA------VELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M+ +V D+ETTGLD G + + + + + + P G +S Sbjct: 1 MKEYVVVDLETTGLDPYK------GCEIIEIGITEIKNEQIVKNYSRLIKPKGIISSFIT 54 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 H + ++P + F + ++ AHNAKFD+ F+N L+ +N +P++ Sbjct: 55 ELTHISNEMVENEEP-LELVLPRFRKYIGDRTII--AHNAKFDLKFLNYYLRMLNLEPIN 111 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L + + L + C Y I + + H A D+ + +++K Sbjct: 112 NYICTVELLKKCKSYKGKNKKLETACAYYNIE--NINAHRADSDTLATAKLFLK 163 >gi|220921028|ref|YP_002496329.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] gi|219945634|gb|ACL56026.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] Length = 222 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 55/175 (31%), Gaps = 10/175 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFL-CPNGRKNSPEALKL 62 R + D+E TGL + DRI+ GAV L S T + P + Sbjct: 19 RLLAIDVEATGL-AARDRIVSFGAVALDTASLLGPSPAPTCHHLIFDPQRVSHPRAEAVH 77 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 P +++ Q +AHNA FD G + E + L Sbjct: 78 GYDDWLLRHQDP--AALHLNAIAALLGQADLIVAHNAAFDFGLLQREFAAAGRPALAART 135 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + RR + +HGAL D+ L VY+ + Sbjct: 136 YCTLEAYRRRGEAGPATLDAVCRRVR--LQRTGERHGALEDAWLALRVYLWLQGC 188 >gi|217972890|ref|YP_002357641.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica OS223] gi|217498025|gb|ACK46218.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS223] Length = 228 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK 39 + D+E TGL+ + D+I+ IG V + Sbjct: 43 VAMDLEMTGLNPQQDQILSIGLVPIERGEI 72 >gi|153001188|ref|YP_001366869.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica OS185] gi|151365806|gb|ABS08806.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS185] Length = 228 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK 39 + D+E TGL+ + D+I+ IG V + Sbjct: 43 VAMDLEMTGLNPQQDQILSIGLVPIERGEI 72 >gi|264677043|ref|YP_003276949.1| exonuclease, RNase T and DNA polymerase III [Comamonas testosteroni CNB-2] gi|262207555|gb|ACY31653.1| Exonuclease, RNase T and DNA polymerase III [Comamonas testosteroni CNB-2] Length = 174 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D E TGL+ DRIIEI V Sbjct: 4 LDCEMTGLNPDRDRIIEIAVV 24 >gi|239948068|ref|ZP_04699821.1| DNA polymerase III subunit epsilon [Rickettsia endosymbiont of Ixodes scapularis] gi|239922344|gb|EER22368.1| DNA polymerase III subunit epsilon [Rickettsia endosymbiont of Ixodes scapularis] Length = 251 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 5/51 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL---DYSK--TNRTFQVFLCPNGRKNS 56 D ETTGL D+I+E+G V+ D F + P Sbjct: 2 FLDTETTGLSYVTDKILELGMVKFEYTNDGRIYNILEEFNQYQDPKEPIAP 52 >gi|260881524|ref|ZP_05404631.2| exonuclease [Mitsuokella multacida DSM 20544] gi|260848674|gb|EEX68681.1| exonuclease [Mitsuokella multacida DSM 20544] Length = 196 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 7/162 (4%) Query: 6 KMRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M D ET TG D + V + + ++ + P + S K+HG Sbjct: 1 MMNFTAIDFETATG---ARDSACSVAVVTIRAGALV-DSYYTLIQPPANRYSYFNTKIHG 56 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 +T+ + F+ I+ E +AHNAKFD+ + + L R S Sbjct: 57 LTEADTANAADFAGIWPELEAKLEG--QLVVAHNAKFDMSVLRSCLARYGLQAPAFSYCD 114 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 R + + L ++ + H Sbjct: 115 TVAIARRAWPNLANHKLGTVGAYLNLHFRHHDALEDAKACAA 156 >gi|290961805|ref|YP_003492987.1| exonuclease [Streptomyces scabiei 87.22] gi|260651331|emb|CBG74453.1| putative exonuclease [Streptomyces scabiei 87.22] Length = 233 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD ETTG+D + DRI+ AV + D T R + + P G A +HG+TDE Sbjct: 3 AFDTETTGVDVETDRIVS-AAVVVQDAPGTRPRVTRWLVNP-GVPVPAGATAVHGLTDER 60 Query: 70 LKDKPSFSSIFS 81 L+ + + Sbjct: 61 LQRDGRWPAPVM 72 >gi|269123136|ref|YP_003305713.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus moniliformis DSM 12112] gi|268314462|gb|ACZ00836.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus moniliformis DSM 12112] Length = 426 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 73/208 (35%), Gaps = 8/208 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+ D+ETTG+ KND I+++ ++++ F ++ P + +A K+H I+ E Sbjct: 43 IILDVETTGIR-KNDEILQLSIIDIMGNVV----FDKYMKPKYVNDWDDAFKIHNISHEM 97 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+K S + + K + + Sbjct: 98 VKNKKYISYYKKDIEKILKKHKLIIG--YEVNSDIAFLRRAGIELKSNIVLDIAYLFSLL 155 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-INFGFKTN 188 ++ R SL + H AL D + ++V + + F + Sbjct: 156 FENENLIDRKIRPSLLDAAKFYNLDFNAHDALSDCIATLHCFKSILVEKKEKLEFKYDVQ 215 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 +F +EE K S L + + ++ Sbjct: 216 VMKFLEEENKVEEKTSKLTKLARKYVKL 243 Score = 44.9 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 11/177 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+ D+ETTG+ +ND II++ +++ F + P EA K+H I E Sbjct: 251 IILDLETTGIR-ENDEIIQLSIIDIKGEKL----FNEYFKPINVTEWEEAYKIHNIGKEM 305 Query: 70 LKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 L+DK + + + + + + GF +++++ Sbjct: 306 LEDKLTIEEYREKIQNILDSTDYMIGYGIDFDYKLLQRQGFNVEHIKKVDVSDYFKYIYR 365 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + + K P K G S L+ + ++ + ++ Sbjct: 366 KIFNDPKLKRPKLIECSNYYGFKDRGFHNSLTDCFATLVSYKGIYKYMLEELSDRNE 422 >gi|329295775|ref|ZP_08253111.1| Orn [Plautia stali symbiont] Length = 182 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/30 (50%), Positives = 18/30 (60%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M N+ I D+E TGLD + DRIIEI Sbjct: 1 MTAGNENNLIWIDLEMTGLDPERDRIIEIA 30 >gi|91784777|ref|YP_559983.1| oligoribonuclease [Burkholderia xenovorans LB400] gi|122970228|sp|Q13VF8|ORN_BURXL RecName: Full=Oligoribonuclease gi|91688731|gb|ABE31931.1| Oligoribonuclease [Burkholderia xenovorans LB400] Length = 207 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 9/199 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKL 62 ++ M + D+E TGL+ +DRIIEI V TN T + P + + Sbjct: 15 RSDMNLVWLDMEMTGLEPDSDRIIEIAVV------VTNSTLDRMVEGPVLAIHQSDETLA 68 Query: 63 HGITDEFLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 S + + + + G I +D Sbjct: 69 GMDQWNQNTHGRSGLIDRVKASTVSEADATEQIRDFLSVYVPPGKSPMCGNSICQDRRFM 128 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +R + L + L LC+R+ I + A+ + I + + Sbjct: 129 ARWMPELERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYRE 188 Query: 181 INFGFKTNEDRFFKEEKKT 199 + E+ Sbjct: 189 HFLIPSAPDAANGAEKAAE 207 >gi|124007771|ref|ZP_01692473.1| 3'-5' exonuclease eri-1 [Microscilla marina ATCC 23134] gi|123986717|gb|EAY26498.1| 3'-5' exonuclease eri-1 [Microscilla marina ATCC 23134] Length = 185 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 9/174 (5%) Query: 7 MRKIVFDIETTGLDSKNDRI---IEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKL 62 M ++ D+E T +++ +R IEIGAV + + K F F+ P S +L Sbjct: 1 MVYVIVDLEATCWETRENRANETIEIGAVCIGNEGKWVDEFDTFVKPVTHPVLSEFCTQL 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAELQRINKDPL 118 IT E + D P F +F + N + V F N L Sbjct: 61 TSITQEMVDDAPLFPEALDDFQQWINNCANGDQYVLCSWGYYDRVQFKNDCLLHNLPTQW 120 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S I A K+ + ++ G + H + D+ ++D+++ Sbjct: 121 LASHISLKHQYADIKNMRRPIGMKKALQKEG-LFLSGTHHRGIDDAKNIADIFL 173 >gi|157161311|ref|YP_001458629.1| exodeoxyribonuclease X [Escherichia coli HS] gi|157066991|gb|ABV06246.1| exodeoxyribonuclease X [Escherichia coli HS] Length = 220 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|238757512|ref|ZP_04618697.1| Oligoribonuclease [Yersinia aldovae ATCC 35236] gi|238704274|gb|EEP96806.1| Oligoribonuclease [Yersinia aldovae ATCC 35236] Length = 181 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + +N+ I D+E TGLD + DRIIEI Sbjct: 1 MAENQNNLIWIDLEMTGLDPERDRIIEIA 29 >gi|300775432|ref|ZP_07085294.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC 35910] gi|300506172|gb|EFK37308.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC 35910] Length = 407 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 7/194 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIE+ G +N+ II+I T++ F + P G +P KL IT + + Sbjct: 4 IIDIESNGAGYRNECIIDIAIYRYDGQKITDQ-FISLVNPEG-DITPFVQKLTSITPKMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K P F I + QN + HN FD + +R+ D Sbjct: 62 KTAPKFHEIAKRVIE--ITQNTTLVGHNIDFDYRMLRQSFKRLGYD---FKINTLDTIPL 116 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 +K + + I + H A D+ +++ ++ ++ K +E+ Sbjct: 117 AKKLIPDEVSYSLGKLVKSLGIPLTNHHRAEGDARATLELFKLLISKDTENEIIQKQHEE 176 Query: 191 RFFKEEKKTVPNIS 204 K + ++ Sbjct: 177 SNAKTYINKIKELT 190 >gi|315057872|gb|ADT72201.1| Exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni S3] Length = 256 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 6/122 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIE+TG I+EIGAV++ + + R FQ F+ ++ +L GIT E + Sbjct: 74 IVDIESTGG-VSKGEILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYEMV 129 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ PS + + S+F +++ ++AHN +FD FI+ L L RI Sbjct: 130 ENAPSLTKVLSDF--RLFLKDSIFVAHNVRFDYSFISKALNECGFGILLNRRICTIEFAQ 187 Query: 131 RR 132 Sbjct: 188 CC 189 >gi|255321503|ref|ZP_05362661.1| mature parasite-infected erythrocyte surface antigen [Campylobacter showae RM3277] gi|255301359|gb|EET80618.1| mature parasite-infected erythrocyte surface antigen [Campylobacter showae RM3277] Length = 311 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 6/96 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIET+G + +IIEIGA++L + + F+ F+ +L GIT E L Sbjct: 75 VVDIETSGG-INSGQIIEIGALKLQNGEIIGK-FETFV--YAPYVPENISELTGITAEHL 130 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 K+ PS + + +F + ++AHN +FD GFI Sbjct: 131 KNAPSLAFVMEQF--KVFLGQSVFVAHNVRFDYGFI 164 >gi|171913521|ref|ZP_02928991.1| hypothetical protein VspiD_20115 [Verrucomicrobium spinosum DSM 4136] Length = 202 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 5/122 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+ETTGLD + I+EIGAV +L + F + P+ D Sbjct: 6 RLLVTDLETTGLDGRACGIVEIGAVWMLGAGE----FVMKCRPHADAVIEARAMEVNGCD 61 Query: 68 EFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L + +F ++ N + D+ F+ +R + R +D Sbjct: 62 WHLDPTVAAEVEALEQFVEWVGAGPVILCGQNPRHDLWFLQEGAKRHGLELPFVHRTLDL 121 Query: 127 LS 128 + Sbjct: 122 HT 123 >gi|300812809|ref|ZP_07093204.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496145|gb|EFK31272.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 119 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+E TG +II+IGA+++ D + F ++ P+ K + L GI++ Sbjct: 10 VFDLEITGK-----KIIQIGALKVRDDQTVAK-FSTYVNPSLEKINDYVSHLTGISNYQT 63 Query: 71 KDKPSFSSIFSEFWDFF 87 P + +F DF Sbjct: 64 DAVPLIDEVMPDFLDFV 80 >gi|92113002|ref|YP_572930.1| DNA polymerase III subunit epsilon [Chromohalobacter salexigens DSM 3043] gi|91796092|gb|ABE58231.1| Exonuclease [Chromohalobacter salexigens DSM 3043] Length = 205 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 5/172 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQ-VFLCPNGRKNSPEALKLHGITD 67 I D ETT LD + ++ I AV++ D T+ + P+ S +++++HG+ Sbjct: 32 IALDCETTDLDPRQADLVAIAAVKVRDGRVLTSESLDLRLQRPD--SLSSDSIRIHGLRG 89 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L + + DF + W + + Sbjct: 90 VDLLGGEALGDALNTLLDFIGNRPLVGWCIDYDVAVINRHLRPRTGFDLPNRTIDVCRLY 149 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 RR P DL + + +H AL D+ + +Y+++ G Sbjct: 150 ARERRRAQPDVEPDLRFEAMSEALGVPVMGRHTALGDAVTTALMYLRLCRGQ 201 >gi|30683321|ref|NP_850090.1| exonuclease family protein [Arabidopsis thaliana] gi|83305201|sp|Q9ZVE0|ORN_ARATH RecName: Full=Oligoribonuclease gi|17381150|gb|AAL36387.1| unknown protein [Arabidopsis thaliana] gi|25054981|gb|AAN71962.1| unknown protein [Arabidopsis thaliana] gi|330252818|gb|AEC07912.1| oligoribonuclease [Arabidopsis thaliana] Length = 222 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN 41 D+E TGL+ + DRI+EI + + + T Sbjct: 49 IDLEMTGLNVEVDRILEIACI-ITNGDLTQ 77 >gi|79323145|ref|NP_001031426.1| exonuclease family protein [Arabidopsis thaliana] gi|222423704|dbj|BAH19818.1| AT2G26970 [Arabidopsis thaliana] gi|330252819|gb|AEC07913.1| oligoribonuclease [Arabidopsis thaliana] Length = 218 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN 41 D+E TGL+ + DRI+EI + + + T Sbjct: 45 IDLEMTGLNVEVDRILEIACI-ITNGDLTQ 73 >gi|56460284|ref|YP_155565.1| 3'-5' exonuclease [Idiomarina loihiensis L2TR] gi|56179294|gb|AAV82016.1| 3'-5' exonuclease [Idiomarina loihiensis L2TR] Length = 215 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 47/164 (28%), Gaps = 17/164 (10%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + DIE+TGLD K +I+ I + P + + + Sbjct: 26 RYVALDIESTGLDPKKHQILSIA-------------WMSIHPPVMHLGNAQYHVFAHGQE 72 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L P+ + + + +E + + + + + ++ L Sbjct: 73 LELGQSPTIHGLTRQDFLHSSEPKQTFAMLSRALNDAVLVCHHKGMDWRFLKHIE----A 128 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P + D + K H+ +G L Y Sbjct: 129 QYGIPFKPLAIFDTLAFEKHKLERNPHQPIYGGQLALSACRKRY 172 >gi|30063256|ref|NP_837427.1| exodeoxyribonuclease X [Shigella flexneri 2a str. 2457T] gi|56479974|ref|NP_707706.2| exodeoxyribonuclease X [Shigella flexneri 2a str. 301] gi|30041508|gb|AAP17236.1| hypothetical protein S1920 [Shigella flexneri 2a str. 2457T] gi|56383525|gb|AAN43413.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|281601259|gb|ADA74243.1| Exodeoxyribonuclease 10 [Shigella flexneri 2002017] gi|313650662|gb|EFS15064.1| exonuclease family protein [Shigella flexneri 2a str. 2457T] gi|332757646|gb|EGJ87979.1| exonuclease family protein [Shigella flexneri 2747-71] gi|332758031|gb|EGJ88357.1| exonuclease family protein [Shigella flexneri K-671] gi|332766817|gb|EGJ97018.1| exonuclease family protein [Shigella flexneri 2930-71] gi|333018617|gb|EGK37911.1| exonuclease family protein [Shigella flexneri K-304] Length = 220 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSLLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGLKYSNMALYKTRKLNVQTPLGLHHHRALYDCYITAALLIDIMNT 153 >gi|238787531|ref|ZP_04631329.1| Oligoribonuclease [Yersinia frederiksenii ATCC 33641] gi|238724318|gb|EEQ15960.1| Oligoribonuclease [Yersinia frederiksenii ATCC 33641] Length = 181 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + +N+ I D+E TGLD + DRIIEI Sbjct: 1 MAENQNNLIWIDLEMTGLDPERDRIIEIA 29 >gi|332188896|ref|ZP_08390601.1| exonuclease family protein [Sphingomonas sp. S17] gi|332011078|gb|EGI53178.1| exonuclease family protein [Sphingomonas sp. S17] Length = 253 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 45/164 (27%), Gaps = 9/164 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL---LDYS--KTNRTFQVFLCPNGRKNSPEALKLHGI 65 V D+ETTG + EIG ++ + + + P GR P +H I Sbjct: 11 VIDLETTGQAPPTHGVCEIGWQDVALGKNGRWELEGEGGSLLVNP-GRPIPPITQAIHHI 69 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DE + D P + + + + D + Sbjct: 70 LDEQVADAPWWHDVARRV---LDPWPRRLALAAHRADFEQQFCTPAMTQSADWICTWKCA 126 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 S++ + H A D+++ + Sbjct: 127 LRLWPDSPSFSNQVLRYWRKPEGLVHERGLPIHRAFPDAYVTAH 170 >gi|241894744|ref|ZP_04782040.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides ATCC 33313] gi|241871956|gb|EER75707.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides ATCC 33313] Length = 177 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 7/163 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET +K + +G + D + F + P+ ++HGIT Sbjct: 1 MNFIAMDFET--ASAKRYSAVSLGLAVVRDNKLVDE-FYTLIKPDS-FFDKRNTRIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124 + +++ P F E F N IAHNA FD G + L + D + Sbjct: 57 EADVRNAPIF-PEVWEQIQQFYTPNQLVIAHNAPFDNGVLRETLTHYDIDLPHYLSLDTV 115 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 T + P+ + + + + H + + + + +L Sbjct: 116 RTSRKLYPELPNHKLNTVAAALGIDLKHHHNALNDTVAAAEIL 158 >gi|110805789|ref|YP_689309.1| exodeoxyribonuclease X [Shigella flexneri 5 str. 8401] gi|110615337|gb|ABF04004.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 220 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSLLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRCVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|291619097|ref|YP_003521839.1| Orn [Pantoea ananatis LMG 20103] gi|291154127|gb|ADD78711.1| Orn [Pantoea ananatis LMG 20103] gi|327395429|dbj|BAK12851.1| oligoribonuclease Orn [Pantoea ananatis AJ13355] Length = 194 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/30 (50%), Positives = 18/30 (60%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M N+ I D+E TGLD + DRIIEI Sbjct: 13 MATGNENNLIWIDLEMTGLDPERDRIIEIA 42 >gi|289663085|ref|ZP_06484666.1| ribonuclease T [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 211 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 13/185 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D ++EI V + T L P G + P++L++ G Sbjct: 26 VVVDVETGGFDWNKHALLEIACVPIEMDAAGRFFPGDTASAHLVPAPGLEIDPKSLEITG 85 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q A + HNA FD+ F+NA + R+ Sbjct: 86 IVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 145 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ + L + G+ + H A+ D+ + ++ + Sbjct: 146 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNTADAHSAVYDTEQTARLFCTIAN 205 Query: 177 GGSQI 181 Sbjct: 206 AWPGP 210 >gi|332707583|ref|ZP_08427616.1| putative exonuclease [Lyngbya majuscula 3L] gi|332353646|gb|EGJ33153.1| putative exonuclease [Lyngbya majuscula 3L] Length = 186 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 59/179 (32%), Gaps = 9/179 (5%) Query: 11 VFDIETT---GLDS--KNDRIIEIGA--VELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 V D+E T G + + IIEIG ++++ + + + P + S KL Sbjct: 10 VVDVEATCWQGKPPPGQENEIIEIGICVLDVVSGKPLEKD-SILVKPERSRVSEFCTKLT 68 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 +T E + SF S D + W ++ +D + +R Sbjct: 69 TLTQEQVDQGISFVEACSMLQDKYLSARRVWASY-GDYDRNQFQKQCTSRFLRYPFGTRH 127 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+ ++ + + H D+ ++ ++ ++++ Sbjct: 128 INIKTLFAISQALPHEVGMAQALDLLNLPLEGTHHRGGDDAWNIARIFSRLLLQLRNTG 186 >gi|238750063|ref|ZP_04611566.1| Oligoribonuclease [Yersinia rohdei ATCC 43380] gi|238711607|gb|EEQ03822.1| Oligoribonuclease [Yersinia rohdei ATCC 43380] Length = 181 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + +N+ I D+E TGLD + DRIIEI Sbjct: 1 MAENQNNLIWIDLEMTGLDPQRDRIIEIA 29 >gi|187924944|ref|YP_001896586.1| oligoribonuclease [Burkholderia phytofirmans PsJN] gi|187716138|gb|ACD17362.1| Exonuclease RNase T and DNA polymerase III [Burkholderia phytofirmans PsJN] Length = 203 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 56/195 (28%), Gaps = 9/195 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKL 62 ++ M + D+E TGL+ +DRIIEI V TN T + P + + Sbjct: 15 RSDMNLVWLDMEMTGLEPDSDRIIEIAVV------VTNSTLDRMVEGPVLAIHQSDETLA 68 Query: 63 HGITDEFLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 S + + + + G I +D Sbjct: 69 KMDQWNQNTHGRSGLIDRVKASTVSEADAAEQIRDFLSVFVPPGKSPMCGNSICQDRRFM 128 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +R + L + L LC+R+ I + A+ + I + + Sbjct: 129 ARWMPDLERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYRE 188 Query: 181 INFGFKTNEDRFFKE 195 + E Sbjct: 189 HFLIPSAPDAANGAE 203 >gi|305433007|ref|ZP_07402163.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20] gi|304443708|gb|EFM36365.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20] Length = 253 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 6/164 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIE+TG KN +I+EIGAV++ + + +R F + ++ +L GI + + Sbjct: 74 IVDIESTGG-IKNGQILEIGAVKIKNLQEIDR-FSSLV--QVKEIPENITELTGINLDMV 129 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD PS + + ++F +++ ++AHN +FD GFI+ L L RI Sbjct: 130 KDAPSLTKVLNDF--RLFLKDSIFVAHNVRFDYGFISKALNECGFGILLNRRICTIEFAQ 187 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 HR+ + AL + + K+ Sbjct: 188 CCIESPRYKLDVLKELLGIKNAHHRALNDALAAAEIFKHCLGKL 231 >gi|302758050|ref|XP_002962448.1| hypothetical protein SELMODRAFT_141141 [Selaginella moellendorffii] gi|300169309|gb|EFJ35911.1| hypothetical protein SELMODRAFT_141141 [Selaginella moellendorffii] Length = 236 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN 41 D+E TGLD DRI+EI + + D T Sbjct: 63 IDLEMTGLDVCKDRILEIACI-ITDGKLTK 91 >gi|123440753|ref|YP_001004745.1| oligoribonuclease [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166216592|sp|A1JIQ8|ORN_YERE8 RecName: Full=Oligoribonuclease gi|122087714|emb|CAL10499.1| oligoribonuclease [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 181 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + +N+ I D+E TGLD + DRIIEI Sbjct: 1 MAENQNNLIWIDLEMTGLDPERDRIIEIA 29 >gi|85058292|ref|YP_453994.1| oligoribonuclease [Sodalis glossinidius str. 'morsitans'] gi|123520179|sp|Q2NW86|ORN_SODGM RecName: Full=Oligoribonuclease gi|84778812|dbj|BAE73589.1| putative oligoribonuclease [Sodalis glossinidius str. 'morsitans'] Length = 181 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 11 IDLEMTGLDPERDRIIEIA 29 >gi|113460447|ref|YP_718509.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT] gi|170718007|ref|YP_001783526.1| exonuclease RNase T and DNA polymerase III [Haemophilus somnus 2336] gi|112822490|gb|ABI24579.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT] gi|168826136|gb|ACA31507.1| Exonuclease RNase T and DNA polymerase III [Haemophilus somnus 2336] Length = 236 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 20/170 (11%), Positives = 62/170 (36%), Gaps = 4/170 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D ETTGL+S D I+ + V + + + ++ + F+ ++ + + ++ I Sbjct: 52 YLVIDFETTGLNSMMDNILSVATVPIDNLTLDISKAWHQFV-AEQQEIKEDTVIINHILP 110 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L + ++ ++ + + ++ + Sbjct: 111 QMLNGAETLDDTMNKLFELMQGRILIAHGSTIEKRFILHYLNVRYNLSQFPLFWLDTLKI 170 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + + L+ + +Y + H AL+D+ ++++ + Sbjct: 171 ERSLCQDNENNYQLSHIRNKYNLPEYIG--HNALIDAISAGELFLAQLEK 218 >gi|86358436|ref|YP_470328.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli CFN 42] gi|86282538|gb|ABC91601.1| probable DNA polymerase III, epsilon subunit protein [Rhizobium etli CFN 42] Length = 196 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 5/150 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I D ET + + +G + + T R + + P + S + +HGI Sbjct: 1 MKTIAIDFET--ANEQRGSACSVGLAWIEEGRVT-RVEERLIRPRDMRFSGMNIAIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++D P F + EF + + AHNA FD A L + + + + Sbjct: 58 PEHVEDAPEFPEVMDEFHEDISGATMI--AHNAAFDFSVWRASLDLYRQSYPELTYLCSL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156 R + LN + + G+ H + Sbjct: 116 KMAQRIWPHFLSHRLNLIAEHLGLRFMHHN 145 >gi|209522085|ref|ZP_03270737.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. H160] gi|209497475|gb|EDZ97678.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. H160] Length = 251 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 18/29 (62%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 ++ M + D+E TGL+ DRIIEI V Sbjct: 63 RSDMNLVWLDMEMTGLEPDTDRIIEIAVV 91 >gi|29828689|ref|NP_823323.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis MA-4680] gi|29605793|dbj|BAC69858.1| putative DNA polymerase III epsilon subunit [Streptomyces avermitilis MA-4680] Length = 240 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 FD+ETTG D + RI+ +E+ R + P Sbjct: 11 FDLETTGTDPREARIVTGAVIEVKGQEPVGRR-EWLADPG 49 >gi|301645642|ref|ZP_07245570.1| exonuclease [Escherichia coli MS 146-1] gi|301076071|gb|EFK90877.1| exonuclease [Escherichia coli MS 146-1] Length = 220 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNVALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|226308478|ref|YP_002768438.1| exonuclease [Rhodococcus erythropolis PR4] gi|226187595|dbj|BAH35699.1| putative exonuclease [Rhodococcus erythropolis PR4] Length = 241 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 5/100 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD+ETTG D RI+ V ++D S T L P + + T+ Sbjct: 26 AFDLETTGRDPSTARIVS-ACVAVIDGSNV-ETRTWLLDPGVDIPADASAIHGISTEYAA 83 Query: 71 KDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFIN 107 + +++ + E D + +A NA +D+ ++ Sbjct: 84 RHGQNYAEGYEEIRDALHNSWARDHAVVAFNASYDLTVMH 123 >gi|58616403|ref|YP_195533.1| DNA polymerase III subunit epsilon [Azoarcus sp. EbN1] gi|56315865|emb|CAI10509.1| putative exonuclease [Aromatoleum aromaticum EbN1] Length = 342 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEFLK 71 D+ETTGL +D+II+IG V + + +V +G ++ + Sbjct: 47 DVETTGLKKDSDKIIDIGLVLAEFDRVSGQVLRVLERYSGFEDPGRPIPEEITRLTGIRD 106 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + + + + +AHNA FD GF+ K S+ S Sbjct: 107 EDVLEQTFDDARVEALIARADLVVAHNAPFDRGFLELRFPSFQKKWWACSQREAPWSQMM 166 >gi|309791196|ref|ZP_07685728.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] gi|308226758|gb|EFO80454.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] Length = 272 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 5/97 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGLD + R+ E+ + + + L P+ R PEA ++G D Sbjct: 15 VFFDLETTGLDLRAGHRVCELALLRVR-GAAVEDYLGSALRPD-RLLDPEAAAVNGFQDA 72 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 L+ P F+S+ A IAHN FD+ F Sbjct: 73 ELRGAPRFASVAGRVQR--MAHGAVLIAHNLPFDMAF 107 >gi|302815434|ref|XP_002989398.1| hypothetical protein SELMODRAFT_229455 [Selaginella moellendorffii] gi|300142792|gb|EFJ09489.1| hypothetical protein SELMODRAFT_229455 [Selaginella moellendorffii] Length = 236 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN 41 D+E TGLD DRI+EI + + D T Sbjct: 63 IDLEMTGLDVCKDRILEIACI-ITDGKLTK 91 >gi|292670219|ref|ZP_06603645.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648171|gb|EFF66143.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 179 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 8/170 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +VFD ETTG S D ++ + V+ + + + P + P+A K++ I+ Sbjct: 4 KILVFDTETTGFRSD-DEVLTLAVVDGAGATVVDGMYA----PVRKNAWPDAEKINRISP 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT- 126 + + P + +E FN+ + +N +FD+ + RI + + Sbjct: 59 AMVVNCPPILAQQAELERMFNDPETLLVGYNIEFDIRLLAQSGIRIQNPNRHDVMLAFSE 118 Query: 127 --LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R+ L Y HGAL D+ Y KM Sbjct: 119 FRKVPDARRGGYRWWKLAECADYYRYDWGTTKAHGALADTLATLFCYQKM 168 >gi|170700979|ref|ZP_02891961.1| Exonuclease RNase T and DNA polymerase III [Burkholderia ambifaria IOP40-10] gi|170134119|gb|EDT02465.1| Exonuclease RNase T and DNA polymerase III [Burkholderia ambifaria IOP40-10] Length = 206 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/29 (51%), Positives = 20/29 (68%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGLD NDRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43 >gi|283832758|ref|ZP_06352499.1| exodeoxyribonuclease 10 [Citrobacter youngae ATCC 29220] gi|291072441|gb|EFE10550.1| exodeoxyribonuclease 10 [Citrobacter youngae ATCC 29220] Length = 220 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVVDGKIV-NPMSNLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I +++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDIIPQYY-----GSDWYVAHNASFDRRVLPEMPGEWICT-------MKLSRRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T + H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPAGLHHHRALYDCYITAALLIDIMQT 153 >gi|289670069|ref|ZP_06491144.1| ribonuclease T [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 211 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 13/185 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D ++EI V + T L P G + P++L++ G Sbjct: 26 VVVDVETGGFDWNKHALLEIACVPIEMDAAGRFFPGDTASAHLVPAPGLEIDPKSLEITG 85 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q A + HNA FD+ F+NA + R+ Sbjct: 86 IVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHK 145 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ + L + G+ + H A+ D+ + ++ + Sbjct: 146 RNPFHPFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCTIAN 205 Query: 177 GGSQI 181 Sbjct: 206 AWPGP 210 >gi|302541136|ref|ZP_07293478.1| putative DNA polymerase III epsilon subunit [Streptomyces hygroscopicus ATCC 53653] gi|302458754|gb|EFL21847.1| putative DNA polymerase III epsilon subunit [Streptomyces himastatinicus ATCC 53653] Length = 241 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D ++DRI+ V + + P G A ++HG+TD L Sbjct: 11 AFDTETTGIDVEHDRIVSAALVVQRGAGSLPEVRRWLVSP-GIPVPQAATEIHGLTDTHL 69 Query: 71 KDKPSFSSIFS 81 + + + Sbjct: 70 QQHGRWPAPVM 80 >gi|187779049|ref|ZP_02995522.1| hypothetical protein CLOSPO_02644 [Clostridium sporogenes ATCC 15579] gi|187772674|gb|EDU36476.1| hypothetical protein CLOSPO_02644 [Clostridium sporogenes ATCC 15579] Length = 256 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 18/180 (10%) Query: 7 MRKIVFDIETTGLD--SKND-------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNS 56 M I+FD+E + N II+IGA++L + T TF + P + Sbjct: 1 MNYIIFDLE---FNQGYNNHFEIKCPFEIIQIGAIKLNEGFTTIDTFNALVKPEIYSDLN 57 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQ 111 P L +T + L F ++ +F +F N + ++ + Sbjct: 58 PFVKNLTNLTMDSLNKARPFRDVYKDFLEFLNKENKDKNIFCIWGMTDMKELFRNIVYYE 117 Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 K + + +P S N S + H A D+ ++V+ Sbjct: 118 LDTKSIPKEYINVQAYTGKYLNYPKSVNIGLSNAVELFHITKNNDFHNAFNDAFYTTEVF 177 >gi|332184270|gb|AEE26524.1| Exodeoxyribonuclease I [Francisella cf. novicida 3523] Length = 482 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 59/220 (26%), Gaps = 4/220 (1%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEA 59 M + + +D+ETTG+++ D++++ A+ F F+ N P A Sbjct: 1 MFQNQT--FLFYDLETTGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPIA 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 H I+ S + N I +N N P Sbjct: 59 TITHHISIAQANTGVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPY 118 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + + S A P + + L + + G Sbjct: 119 SHQFKNGCSRADL-FPIVTCYHLFCNDVLKWPKILDEEGQQKISLKLENLNTENNLYSGG 177 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + + +K + N + + F + E Sbjct: 178 RAHDAITDVIVTVELAKKLKIANPKMWQFLLTKFNKQNDE 217 >gi|325524019|gb|EGD02205.1| oligoribonuclease [Burkholderia sp. TJI49] Length = 208 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/29 (51%), Positives = 20/29 (68%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGLD NDRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43 >gi|307132771|ref|YP_003884787.1| oligoribonuclease [Dickeya dadantii 3937] gi|306530300|gb|ADN00231.1| oligoribonuclease [Dickeya dadantii 3937] Length = 183 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M+ +N I D+E TGLD + DRIIEI Sbjct: 4 MVNEN--NLIWIDLEMTGLDPERDRIIEIA 31 >gi|254583524|ref|XP_002497330.1| ZYRO0F03036p [Zygosaccharomyces rouxii] gi|238940223|emb|CAR28397.1| ZYRO0F03036p [Zygosaccharomyces rouxii] Length = 251 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 2/57 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD +DRIIEI + + N ++ + + Sbjct: 43 VDCEMTGLDHNSDRIIEICCIITDGHLSVVDNNCYESVIHCDKSILDQMGPWCVEHH 99 >gi|256377108|ref|YP_003100768.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM 43827] gi|255921411|gb|ACU36922.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM 43827] Length = 372 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 75/234 (32%), Gaps = 18/234 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D E T R+IEI V + + P G + +P A + HGIT + Sbjct: 94 VVLDTELTDF---TGRVIEIAVVATDGATL----LTSLVDPEGAQINPYAQRAHGITAQM 146 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L P+ ++ + + A NA FD+ + AE + + D P + Sbjct: 147 LTGAPTLEQLWPKLDHVLRGKRVI--AWNAPFDLTRLRAEHRHLFGDADLPDWLTGPWLC 204 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 A RKH + D N+ + H A D +M T Sbjct: 205 AMRKHAAWVGDRNTKGGGF-RNHRLEGGHRAEGDCLAALAWIKRMADTAPGTEAHAGTGA 263 Query: 190 DRFFKEEKKTVPNISLLKRDKPLFTRITKEEL--------DEHDKTIQTLGKNA 235 + + P T EL EH ++++ + A Sbjct: 264 HAGTGAHAVAGAHPGAVTTGAPEPDLATIRELWPQVLGKVREHSRSLEAMLGKA 317 >gi|170024544|ref|YP_001721049.1| exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis YPIII] gi|186895217|ref|YP_001872329.1| exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis PB1/+] gi|169751078|gb|ACA68596.1| Exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis YPIII] gi|186698243|gb|ACC88872.1| Exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis PB1/+] Length = 217 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 8/144 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++ D ETTGL + IIEI ++ + P + EA +HGIT+ Sbjct: 44 NYLILDTETTGLG-NDAEIIEISIIDCTGKIL----LDTLVKP-IKAIPAEATAIHGITN 97 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + D P++ I +F + + +NA FD I N + I D Sbjct: 98 DIVADAPTWRDIHWQF--MVLTNDRTLLIYNASFDSRLIFQTAAANNCPVPEKKYIFDAE 155 Query: 128 SIARRKHPSSRNDLNSLCKRYGIT 151 + K Sbjct: 156 CVMESYAKYYGQWDQKRNKFKWQR 179 >gi|163794470|ref|ZP_02188441.1| DNA polymerase III, epsilon subunit [alpha proteobacterium BAL199] gi|159180194|gb|EDP64717.1| DNA polymerase III, epsilon subunit [alpha proteobacterium BAL199] Length = 458 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I DIETTGLD+ ++ GA+ + + + L P G ++ +HGITD Sbjct: 15 IAIDIETTGLDASRAHAVQFGAIPIAKGVLKPDDACEQMLNP-GIPIPSSSIAIHGITDA 73 Query: 69 FLKDKPSFSSIFSE 82 +++ P+ S ++ Sbjct: 74 MVRNAPTLSDVWPN 87 >gi|150025025|ref|YP_001295851.1| exonuclease [Flavobacterium psychrophilum JIP02/86] gi|149771566|emb|CAL43037.1| Probable exonuclease [Flavobacterium psychrophilum JIP02/86] Length = 188 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC 49 RK+ IETTG++ D+II IGA+ + + + + ++ L Sbjct: 29 RKVALYIETTGINPAKDKIISIGAIAIEKNQIRIDNCLEIELN 71 >gi|28899651|ref|NP_799256.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD 2210633] gi|260361502|ref|ZP_05774549.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] gi|260879140|ref|ZP_05891495.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|260895473|ref|ZP_05903969.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|260903319|ref|ZP_05911714.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|28807903|dbj|BAC61140.1| putative DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD 2210633] gi|308088058|gb|EFO37753.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|308091615|gb|EFO41310.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|308109530|gb|EFO47070.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|308112864|gb|EFO50404.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] gi|328472225|gb|EGF43095.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329] Length = 209 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC 49 +K + D ETT LD ++ I A +++ + T++ F+V L Sbjct: 26 HKTEFVSLDCETTSLDPNRAELVTIAATKIIDNRILTSQPFEVRLR 71 >gi|115351008|ref|YP_772847.1| oligoribonuclease [Burkholderia ambifaria AMMD] gi|172060013|ref|YP_001807665.1| oligoribonuclease [Burkholderia ambifaria MC40-6] gi|122323700|sp|Q0BH60|ORN_BURCM RecName: Full=Oligoribonuclease gi|115280996|gb|ABI86513.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria AMMD] gi|171992530|gb|ACB63449.1| Exonuclease RNase T and DNA polymerase III [Burkholderia ambifaria MC40-6] Length = 206 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/29 (51%), Positives = 20/29 (68%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGLD NDRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43 >gi|269218897|ref|ZP_06162751.1| putative DNA polymerase III epsilon subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212008|gb|EEZ78348.1| putative DNA polymerase III epsilon subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 240 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Query: 1 MIRKNKM---RKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44 M +N M ++ FD ETTG+D K DR++ V + + + R + Sbjct: 1 MDEENAMWTSSPVIGFDTETTGIDPKRDRLVTCSLVAVTEEGVSKRYW 48 >gi|121997034|ref|YP_001001821.1| oligoribonuclease [Halorhodospira halophila SL1] gi|166216263|sp|A1WTK7|ORN_HALHL RecName: Full=Oligoribonuclease gi|121588439|gb|ABM61019.1| Exonuclease, RNase T and DNA polymerase III [Halorhodospira halophila SL1] Length = 183 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD DRIIEI V Sbjct: 11 IDLEMTGLDPSRDRIIEIAVV 31 >gi|57168588|ref|ZP_00367721.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli RM2228] gi|57020093|gb|EAL56770.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli RM2228] Length = 251 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 6/164 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIE+TG KN +I+EIGAV++ + + +R F + ++ +L GI + + Sbjct: 72 IVDIESTGG-IKNGQILEIGAVKIKNLQEIDR-FSSLV--QVKEIPENITELTGINLDMV 127 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD PS + + ++F +++ ++AHN +FD GFI+ L L RI Sbjct: 128 KDAPSLTKVLNDF--RLFLKDSIFVAHNVRFDYGFISKALNECGFGILLNRRICTIEFAQ 185 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 HR+ + AL + + K+ Sbjct: 186 CCIESPRYKLDVLKELLGIKNAHHRALNDALAAAEIFKHCLGKL 229 >gi|241668749|ref|ZP_04756327.1| exodeoxyribonuclease I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877280|ref|ZP_05249990.1| exodeoxyribonuclease I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843301|gb|EET21715.1| exodeoxyribonuclease I [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 482 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 3/144 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEA 59 M + + +D+ETTG+++ D++++ A+ F F+ N P A Sbjct: 1 MFQNQT--FLFYDLETTGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPIA 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 H I+ S + N I +N N P Sbjct: 59 TITHHISIAQANTGVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPY 118 Query: 120 PSRIIDTLSIARRKHPSSRNDLNS 143 + + S A + L Sbjct: 119 SHQFKNGCSRADLFPIVTCYYLFC 142 >gi|323961899|gb|EGB57498.1| exonuclease [Escherichia coli H489] Length = 220 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNIALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|311069195|ref|YP_003974118.1| DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942] gi|310869712|gb|ADP33187.1| DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942] Length = 208 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 72/214 (33%), Gaps = 9/214 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR + D ET +S + +G + S + + P + LHGI Sbjct: 1 MRIVSIDFET--ANSSRNSACSLGMTIFENSSIVMNH-EWLIQPKQNRFHSFNTALHGID 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + ++P F ++ E + N IAHNA FD+ + + L D + Sbjct: 58 ENMVANEPRFDELWPEIKPYL--TNGLVIAHNASFDISVLRSTLDDYGLDYPEFEYTCTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GF 185 R L+ L R + H A DS +++ + ++F Sbjct: 116 QMAKRHWKELESYKLSFLADRINFRF---NHHNAREDSKAAMLIFLHIQEQYKALHFTEL 172 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + D S L + K + +K+ Sbjct: 173 LNHLDIKKGTLYAGGYTPSRLIKPKSKTRKPSKQ 206 >gi|220907840|ref|YP_002483151.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC 7425] gi|219864451|gb|ACL44790.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC 7425] Length = 164 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 10/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + + +G V + + + + +CP + E +HGI Sbjct: 4 FVAIDFET--ANRAKESACAVGLVRVENLQIVQKAYY-LICPP--QPHFEFTHIHGIRWT 58 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P+F ++SE + AHNA FD ++A I T+ Sbjct: 59 DVAAQPTFGDLWSELHPLIAGTDFI-AAHNAGFDRSVLHACCNSYGIPRP-AQNFICTVQ 116 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +ARR L +C+ G+ H AL D+ + + I Sbjct: 117 LARRTWSLYPTKLPDVCRFLGL---ELDHHHALSDAEACAQIVIAAT 160 >gi|168462596|ref|ZP_02696527.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633859|gb|EDX52211.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 232 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + + P + + Sbjct: 59 ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLP-------ELPGEWICTMKLSRRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRT 153 >gi|159528144|ref|YP_001542707.1| DNA polymerase III subunit epsilon [Fluoribacter dumoffii] gi|159157989|dbj|BAF92678.1| DNA polymerase III subunit epsilon [Fluoribacter dumoffii] Length = 306 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 10/176 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + D+ET G+D+ D IIEIG + D + L G+ PE K+ GI Sbjct: 47 IIDLETMGMDATQDEIIEIGMLSFSFSNEDGILGIKHTYNELNAPGKPIPPEITKITGIR 106 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + K +I F +++ I HNA FD F+ + + + + T Sbjct: 107 NEDVIGK----TINWNFVLQVLKESHLIICHNAGFDRNFLELQTPQDIQKQIITLPFGCT 162 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + K + H A+ D ++ ++ ++ Sbjct: 163 IKDIDWKERDYESSKLDYLNWK--LGYFYDGHRAINDCWATLNLLLQEQGAFDELK 216 >gi|15889361|ref|NP_355042.1| DNA polymerase III, epsilon subunit [Agrobacterium tumefaciens str. C58] gi|15157207|gb|AAK87827.1| DNA polymerase III, epsilon subunit [Agrobacterium tumefaciens str. C58] Length = 202 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 3/152 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I D ET + + +G + D R + + P + SP + +HGI Sbjct: 1 MKTIAIDFET--ANEERGSACSVGLAWIEDGQIV-RVEERLIRPRDMRFSPFNIAVHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D P F + EF D F+ F V + + R++ L + Sbjct: 58 PRDVEDAPEFPEVMEEFIDDFHGATMIAHNAAFDFSVMRASFDKYRLSYPDLSYLCSVKI 117 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158 S + ++ + + + ++ Sbjct: 118 ARHVWPHLVSHKLNVIAHHLQLRFVHHNAAED 149 >gi|38344589|emb|CAD40497.2| OSJNBa0079M09.9 [Oryza sativa Japonica Group] gi|116308941|emb|CAH66068.1| OSIGBa0092O07.3 [Oryza sativa Indica Group] gi|116309117|emb|CAH66222.1| OSIGBa0157N01.8 [Oryza sativa Indica Group] Length = 249 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 D+E TGLD DRI+EI + + D T R Sbjct: 74 IDLEMTGLDITKDRILEIACI-ITDGKLTKR 103 >gi|242237928|ref|YP_002986109.1| exonuclease RNase T and DNA polymerase III [Dickeya dadantii Ech703] gi|242129985|gb|ACS84287.1| Exonuclease RNase T and DNA polymerase III [Dickeya dadantii Ech703] Length = 180 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M+ +N I D+E TGLD + DRIIEI Sbjct: 1 MVNEN--NLIWIDLEMTGLDPERDRIIEIA 28 >gi|168241502|ref|ZP_02666434.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194450291|ref|YP_002045931.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408595|gb|ACF68814.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339659|gb|EDZ26423.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 232 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + + P + + Sbjct: 59 ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLP-------ELPGEWICTMKLSRRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRT 153 >gi|27375179|ref|NP_766708.1| exonuclease I [Bradyrhizobium japonicum USDA 110] gi|27348315|dbj|BAC45333.1| exonuclease I [Bradyrhizobium japonicum USDA 110] Length = 468 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV--FLCPNGRKNS 56 M + FD ETTGL D+I+ AV + F+ L P+ + Sbjct: 1 MSFVFFDTETTGLKRGFDQILHFAAVRTDENLNEVARFETRSRLQPHVLPHP 52 >gi|271502182|ref|YP_003335208.1| exonuclease RNase T and DNA polymerase III [Dickeya dadantii Ech586] gi|270345737|gb|ACZ78502.1| Exonuclease RNase T and DNA polymerase III [Dickeya dadantii Ech586] Length = 180 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M+ +N I D+E TGLD + DRIIEI Sbjct: 1 MVNEN--NLIWIDLEMTGLDPERDRIIEIA 28 >gi|205352416|ref|YP_002226217.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856601|ref|YP_002243252.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205272197|emb|CAR37055.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708404|emb|CAR32708.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326627468|gb|EGE33811.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 232 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + + P + + Sbjct: 59 ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLP-------ELPGEWICTMKLSRRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMSLYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRT 153 >gi|229488668|ref|ZP_04382534.1| DNA polymerase III subunit epsilon [Rhodococcus erythropolis SK121] gi|229324172|gb|EEN89927.1| DNA polymerase III subunit epsilon [Rhodococcus erythropolis SK121] Length = 226 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 5/100 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD+ETTG D RI+ V ++D S T L P + + T+ Sbjct: 11 AFDLETTGRDPSTARIVS-ACVAVIDGSSV-ETRTWLLDPGVDIPAGASAVHGISTEFAA 68 Query: 71 KDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFIN 107 + +S + E + + +A NA +D+ ++ Sbjct: 69 QHGQDYSEGYEEIREALHNSWARDHAVVAFNASYDLTVMH 108 >gi|24374384|ref|NP_718427.1| exonuclease [Shewanella oneidensis MR-1] gi|24348949|gb|AAN55871.1|AE015724_4 exonuclease [Shewanella oneidensis MR-1] Length = 181 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 17/27 (62%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSK 39 D+E TGLD D+I+ IG V + + + Sbjct: 2 DLEMTGLDPFKDQILSIGLVPIENGAI 28 >gi|226197921|ref|ZP_03793495.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei Pakistan 9] gi|237813373|ref|YP_002897824.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei MSHR346] gi|254181036|ref|ZP_04887634.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1655] gi|184211575|gb|EDU08618.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1655] gi|225930109|gb|EEH26122.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei Pakistan 9] gi|237506315|gb|ACQ98633.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei MSHR346] Length = 381 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EI ++ + T+ + P + P +L GITD + Sbjct: 17 FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P+F+ I ++ + ++AHNA FD GF Sbjct: 74 RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106 >gi|126438667|ref|YP_001059957.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia pseudomallei 668] gi|126218160|gb|ABN81666.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 668] Length = 381 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EI ++ + T+ + P + P +L GITD + Sbjct: 17 FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P+F+ I ++ + ++AHNA FD GF Sbjct: 74 RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106 >gi|300779659|ref|ZP_07089515.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] gi|300533769|gb|EFK54828.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] Length = 959 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 6/97 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ TTG +DRI+E+G V L + T++ + PN +H +T Sbjct: 7 FAVIDVVTTGFG-GSDRIVEVGVVLLDQQLREQGTWETLVQPNR---DIATCHVHKLTAT 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 LK+ P++ + E +AHNA F+ F Sbjct: 63 HLKNAPTWEEVAPELAQVIRG--RIGVAHNASFEKRF 97 >gi|292898154|ref|YP_003537523.1| oligoribonuclease [Erwinia amylovora ATCC 49946] gi|291198002|emb|CBJ45104.1| oligoribonuclease [Erwinia amylovora ATCC 49946] Length = 187 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 17/29 (58%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N I D+E TGLD + DRIIEI Sbjct: 1 MTANANNLIWIDLEMTGLDPERDRIIEIA 29 >gi|170769422|ref|ZP_02903875.1| exodeoxyribonuclease X [Escherichia albertii TW07627] gi|170121746|gb|EDS90677.1| exodeoxyribonuclease X [Escherichia albertii TW07627] Length = 220 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVVDGKIV-NPMSHLVRPD-RPITPQAMAIHRITESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|206561254|ref|YP_002232019.1| oligoribonuclease [Burkholderia cenocepacia J2315] gi|198037296|emb|CAR53218.1| oligoribonuclease [Burkholderia cenocepacia J2315] Length = 206 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 15/29 (51%), Positives = 20/29 (68%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGLD NDRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43 >gi|237748400|ref|ZP_04578880.1| exonuclease family protein [Oxalobacter formigenes OXCC13] gi|229379762|gb|EEO29853.1| exonuclease family protein [Oxalobacter formigenes OXCC13] Length = 327 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 13/24 (54%), Positives = 16/24 (66%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVE 33 + D ETTGL S D IIE+G V+ Sbjct: 79 VFLDTETTGLSSDMDVIIELGLVK 102 >gi|254295577|ref|ZP_04963035.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 406e] gi|157805524|gb|EDO82694.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 406e] Length = 381 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EI ++ + T+ + P + P +L GITD + Sbjct: 17 FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P+F+ I ++ + ++AHNA FD GF Sbjct: 74 RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106 >gi|107022156|ref|YP_620483.1| oligoribonuclease [Burkholderia cenocepacia AU 1054] gi|116689101|ref|YP_834724.1| oligoribonuclease [Burkholderia cenocepacia HI2424] gi|170732389|ref|YP_001764336.1| oligoribonuclease [Burkholderia cenocepacia MC0-3] gi|254245960|ref|ZP_04939281.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia cenocepacia PC184] gi|123371764|sp|Q1BXZ5|ORN_BURCA RecName: Full=Oligoribonuclease gi|166215751|sp|A0K5Q4|ORN_BURCH RecName: Full=Oligoribonuclease gi|105892345|gb|ABF75510.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia cenocepacia AU 1054] gi|116647190|gb|ABK07831.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia cenocepacia HI2424] gi|124870736|gb|EAY62452.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia cenocepacia PC184] gi|169815631|gb|ACA90214.1| Exonuclease RNase T and DNA polymerase III [Burkholderia cenocepacia MC0-3] Length = 206 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 15/29 (51%), Positives = 20/29 (68%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGLD NDRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43 >gi|167846824|ref|ZP_02472332.1| possible DNA polymerase/helicase [Burkholderia pseudomallei B7210] Length = 348 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EI ++ + T+ + P + P +L GITD + Sbjct: 17 FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P+F+ I ++ + ++AHNA FD GF Sbjct: 74 RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106 >gi|167739715|ref|ZP_02412489.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 14] Length = 323 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EI ++ + T+ + P + P +L GITD + Sbjct: 17 FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P+F+ I ++ + ++AHNA FD GF Sbjct: 74 RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106 >gi|153839349|ref|ZP_01992016.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810] gi|149747140|gb|EDM58128.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810] Length = 209 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC 49 +K + D ETT LD ++ I A +++ + T++ F+V L Sbjct: 26 HKTEFVSLDCETTSLDPNRAELVTIAATKIIDNRILTSQPFEVRLR 71 >gi|16760829|ref|NP_456446.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765220|ref|NP_460835.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141480|ref|NP_804822.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62180453|ref|YP_216870.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167993853|ref|ZP_02574946.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233692|ref|ZP_02658750.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168259853|ref|ZP_02681826.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168820696|ref|ZP_02832696.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469318|ref|ZP_03075302.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197265660|ref|ZP_03165734.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200390618|ref|ZP_03217229.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|213419003|ref|ZP_03352069.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426806|ref|ZP_03359556.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213648159|ref|ZP_03378212.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213851907|ref|ZP_03381439.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224583619|ref|YP_002637417.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912063|ref|ZP_04655900.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829019|ref|ZP_06546715.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25511843|pir||AB0741 exodeoxyribonuclease X (EC 3.1.11.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16420413|gb|AAL20794.1| DNA exonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503126|emb|CAD05629.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi] gi|29137107|gb|AAO68671.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62128086|gb|AAX65789.1| DNA exonuclease X, degrades ss and ds DNA with 3'-5' polarity [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194455682|gb|EDX44521.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197243915|gb|EDY26535.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199603063|gb|EDZ01609.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205328180|gb|EDZ14944.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332278|gb|EDZ19042.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205342565|gb|EDZ29329.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205351180|gb|EDZ37811.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224468146|gb|ACN45976.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247049|emb|CBG24868.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993856|gb|ACY88741.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158399|emb|CBW17906.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912871|dbj|BAJ36845.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085616|emb|CBY95394.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224521|gb|EFX49584.1| Exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322714928|gb|EFZ06499.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130162|gb|ADX17592.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988772|gb|AEF07755.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 232 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + + P + + Sbjct: 59 ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLP-------ELPGEWICTMKLSRRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRT 153 >gi|76808562|ref|YP_334417.1| DNA polymerase/helicase [Burkholderia pseudomallei 1710b] gi|126455164|ref|YP_001067249.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia pseudomallei 1106a] gi|134278018|ref|ZP_01764733.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 305] gi|217420886|ref|ZP_03452391.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 576] gi|242315973|ref|ZP_04814989.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1106b] gi|254195634|ref|ZP_04902061.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei S13] gi|254261397|ref|ZP_04952451.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1710a] gi|76578015|gb|ABA47490.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 1710b] gi|126228806|gb|ABN92346.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1106a] gi|134251668|gb|EBA51747.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 305] gi|169652380|gb|EDS85073.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei S13] gi|217396298|gb|EEC36315.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 576] gi|242139212|gb|EES25614.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1106b] gi|254220086|gb|EET09470.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1710a] Length = 381 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EI ++ + T+ + P + P +L GITD + Sbjct: 17 FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P+F+ I ++ + ++AHNA FD GF Sbjct: 74 RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106 >gi|269986750|gb|EEZ93030.1| Exonuclease RNase T and DNA polymerase III [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 199 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 7/122 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV DIET+G N I+ IGAV+ + R F K E + Sbjct: 2 IVVDIETSGTSPYNHSILSIGAVDFSN---PERQFYQECQIEKDKEYTEEALNVNGFKKE 58 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE----WIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 P ++ S +F HN FD F+N ++ N + R+ID Sbjct: 59 ELTDPKKKTLESVLNEFIVWIQPVKDKTIGGHNVNFDANFLNYSFKKYNINFSFGHRVID 118 Query: 126 TL 127 T Sbjct: 119 TH 120 >gi|251788035|ref|YP_003002756.1| Exonuclease RNase T and DNA polymerase III [Dickeya zeae Ech1591] gi|247536656|gb|ACT05277.1| Exonuclease RNase T and DNA polymerase III [Dickeya zeae Ech1591] Length = 180 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M+ +N I D+E TGLD + DRIIEI Sbjct: 1 MVNEN--NLIWIDLEMTGLDPERDRIIEIA 28 >gi|194442926|ref|YP_002041143.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401589|gb|ACF61811.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 232 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + + P + + Sbjct: 59 ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLP-------ELPGEWICTMKLSRRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRT 153 >gi|167920040|ref|ZP_02507131.1| possible DNA polymerase/helicase [Burkholderia pseudomallei BCC215] Length = 346 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EI ++ + T+ + P + P +L GITD + Sbjct: 17 FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P+F+ I ++ + ++AHNA FD GF Sbjct: 74 RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106 >gi|167912066|ref|ZP_02499157.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 112] Length = 343 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EI ++ + T+ + P + P +L GITD + Sbjct: 17 FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P+F+ I ++ + ++AHNA FD GF Sbjct: 74 RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106 >gi|167903799|ref|ZP_02491004.1| possible DNA polymerase/helicase [Burkholderia pseudomallei NCTC 13177] Length = 349 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EI ++ + T+ + P + P +L GITD + Sbjct: 17 FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P+F+ I ++ + ++AHNA FD GF Sbjct: 74 RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106 >gi|167895415|ref|ZP_02482817.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 7894] Length = 350 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EI ++ + T+ + P + P +L GITD + Sbjct: 17 FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P+F+ I ++ + ++AHNA FD GF Sbjct: 74 RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106 >gi|167825322|ref|ZP_02456793.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 9] Length = 352 Score = 46.5 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EI ++ + T+ + P + P +L GITD + Sbjct: 17 FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P+F+ I ++ + ++AHNA FD GF Sbjct: 74 RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106 >gi|295835840|ref|ZP_06822773.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] gi|197698852|gb|EDY45785.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] Length = 239 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 FD+ETTG D ++DR++ + L +T L P G + EA +HGI Sbjct: 11 FDLETTGTDVEHDRVVTAAVIRLDASGAVAQTRTWLLDP-GIEIPAEATAIHGIP 64 >gi|217980141|ref|YP_002364191.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T] gi|217508312|gb|ACK55097.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T] Length = 201 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 12/147 (8%) Query: 11 VFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL D ++EI ++ + P+G EA+ +HGITD Sbjct: 24 ILDTETTGL---GDDAEVVEIAVIDCAGNVL----LDTLVRPSG-PVPAEAVAIHGITDA 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P++S I F + ++ +FD I+ +R + Sbjct: 76 MLADAPTWSEIHDRFCCLVEGRQVV--IYSREFDARLISQTARRYGLPAPKGFDQVLDDD 133 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155 + + G + Sbjct: 134 RIHCAMHAYAAFRGEWSEEKGRYRWQK 160 >gi|167720732|ref|ZP_02403968.1| possible DNA polymerase/helicase [Burkholderia pseudomallei DM98] Length = 334 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + RI EI ++ + T+ + P + P +L GITD + Sbjct: 17 FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + P+F+ I ++ + ++AHNA FD GF Sbjct: 74 RGAPTFADIAGALFERLDG--KLFVAHNASFDRGF 106 >gi|310765341|gb|ADP10291.1| Oligoribonuclease [Erwinia sp. Ejp617] Length = 187 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ + DRIIEI Sbjct: 11 IDLEMTGLNPEQDRIIEIA 29 >gi|292489630|ref|YP_003532520.1| oligoribonuclease [Erwinia amylovora CFBP1430] gi|291555067|emb|CBA23161.1| oligoribonuclease [Erwinia amylovora CFBP1430] gi|312173806|emb|CBX82060.1| oligoribonuclease [Erwinia amylovora ATCC BAA-2158] Length = 193 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 17 IDLEMTGLDPERDRIIEIA 35 >gi|209550157|ref|YP_002282074.1| exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535913|gb|ACI55848.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 196 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 5/158 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I D ET + + +G + + T R + + P + S + +HGI Sbjct: 1 MKTIAIDFET--ANEQRGSACSVGLAWIEEGRVT-RVEERLIRPRDMRFSGMNIAIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++D P F + EF + + AHNA FD A L + + + + Sbjct: 58 PEHVEDAPEFPEVMDEFHEDISGATMI--AHNAAFDFSVWRASLDLYRQSYPELTYLCSL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 R + LN + + G+ H + + Sbjct: 116 KMAQRIWPHFLSHRLNLIAEHLGLRFVHHNAAEDAVVC 153 >gi|253690114|ref|YP_003019304.1| Exonuclease RNase T and DNA polymerase III [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756692|gb|ACT14768.1| Exonuclease RNase T and DNA polymerase III [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 180 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M+ +N I D+E TGL+ + DRIIEI Sbjct: 1 MVDEN--NLIWIDLEMTGLNPERDRIIEIA 28 >gi|108760097|ref|YP_630122.1| exonuclease [Myxococcus xanthus DK 1622] gi|108463977|gb|ABF89162.1| exonuclease [Myxococcus xanthus DK 1622] Length = 219 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 3/67 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNG--RKNSPEALKLHGITD 67 D+ETTGLD+ ++E+ + + S ++ + P + + Sbjct: 33 FVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEARVKPTRLADAHPEALAVCGYSDE 92 Query: 68 EFLKDKP 74 E+ P Sbjct: 93 EWRDALP 99 >gi|329896219|ref|ZP_08271397.1| Ribonuclease T [gamma proteobacterium IMCC3088] gi|328921890|gb|EGG29257.1| Ribonuclease T [gamma proteobacterium IMCC3088] Length = 211 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G +++ D ++E+ A V + + + T + P G AL+ G Sbjct: 20 VIIDVETGGFNAQTDALLEVAATIVRMEPDGELYVHETVHHNVVPFEGANLEASALEFTG 79 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + S + N A + HNA FD GFINA ++R Sbjct: 80 IDPYHPFREALSEADALESIFKAIRKEIKSTNCTRAVLVGHNAHFDAGFINAAVERTGLK 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C + GI +++ H A D+ + ++ ++ Sbjct: 140 RNPFHPFSYFDTATLAGLAFGQTVLAKACLQAGIEFDNKAAHSAAYDADRTAHLFCNIVN 199 Query: 177 GGSQIN 182 Q Sbjct: 200 IWRQCG 205 >gi|171909847|ref|ZP_02925317.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Verrucomicrobium spinosum DSM 4136] Length = 200 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 7/122 (5%) Query: 11 VFDIETT----G-LDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLH 63 + D+E T G + IIEIGAV L + +T F F+ P +P KL Sbjct: 17 IIDLEATCCDRGKVPRDEMEIIEIGAVLLDGKTLETVSEFGTFIKPVRHPVLTPFCTKLT 76 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 IT + P F ++ + + +D G + + Sbjct: 77 TITQAEVDAAPMFPEALAKLKAWLEPYPDCMFSSWGAYDKGQFQLDCAFHDLPYPFSEAH 136 Query: 124 ID 125 ++ Sbjct: 137 LN 138 >gi|150018815|ref|YP_001311069.1| exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] gi|149905280|gb|ABR36113.1| Exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] Length = 255 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 66/199 (33%), Gaps = 2/199 (1%) Query: 25 RIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83 II+IGA++L + + TF + P + P L IT + + +F ++ F Sbjct: 40 EIIQIGAIKLDNNFQEVSTFNSLVKPTLYKTIHPYVENLTKITYDKVSSCKNFINVHKAF 99 Query: 84 WDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLSIARRKHPSSRNDLN 142 +F + + + + I + K P + Sbjct: 100 LEFIGDDDVLLCVWGVGDIKELYRNLGFYNLSTSYISKYIDIQKYASKYLKAPKNSRIGL 159 Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPN 202 + H AL D++ S+++ ++ + + R + ++ Sbjct: 160 RNAVEILNIPIYSEFHDALNDAYYTSEIFKRIYNKYMKPETYVPSPAKRTTEPKEVIDNE 219 Query: 203 ISLLKRDKPLFTRITKEEL 221 L + +K +TK+E Sbjct: 220 ALLKQFEKMYNRELTKDEK 238 >gi|293393221|ref|ZP_06637536.1| oligoribonuclease [Serratia odorifera DSM 4582] gi|291424367|gb|EFE97581.1| oligoribonuclease [Serratia odorifera DSM 4582] Length = 181 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MTGNENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|253563502|ref|ZP_04840959.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5] gi|251947278|gb|EES87560.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5] Length = 175 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 8/175 (4%) Query: 9 KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 D ET TG + G V + D T+ + + P + + +HGIT Sbjct: 5 FAAIDFETATGYMESACAV---GIVTVTDGEITDE-YYSLIQPPENEYWRANMLVHGITP 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P F +I+ E +V + + ++ D L + Sbjct: 61 GMTESLPGFHAIYPEVKKRLQGNVVVAHNEQFDRNVLKNSMRMYGLDYDELSLPERWECT 120 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R +L++ C+R G H AL D+ + +Y+ + ++ Sbjct: 121 CRIYRSLGYKPVNLSACCEREG---IELKHHEALSDARGCAKLYLNFLEKYRPLS 172 >gi|315092205|gb|EFT64181.1| conserved domain protein [Propionibacterium acnes HL110PA4] Length = 88 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETT LD RIIEI ++ + + P G EA +H I+ + Sbjct: 17 VILDTETTDLD---GRIIEISIIDAATGTVLMN---QLINPQGAPIYAEARTVHHISPDD 70 Query: 70 LKDKPSFSSIFSEFWDFF 87 L P+F+ ++ D Sbjct: 71 LATAPTFTQVWPRLEDVV 88 >gi|167586566|ref|ZP_02378954.1| oligoribonuclease [Burkholderia ubonensis Bu] Length = 206 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/29 (51%), Positives = 20/29 (68%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGLD NDRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43 >gi|259907169|ref|YP_002647525.1| Oligoribonuclease [Erwinia pyrifoliae Ep1/96] gi|224962791|emb|CAX54246.1| Oligoribonuclease [Erwinia pyrifoliae Ep1/96] gi|283476976|emb|CAY72863.1| oligoribonuclease [Erwinia pyrifoliae DSM 12163] Length = 193 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 17/29 (58%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N I D+E TGL+ + DRIIEI Sbjct: 7 MTANANNLIWIDLEMTGLNPEQDRIIEIA 35 >gi|53712466|ref|YP_098458.1| DNA polymerase III subunit epsilon [Bacteroides fragilis YCH46] gi|60680667|ref|YP_210811.1| putative exonuclease [Bacteroides fragilis NCTC 9343] gi|265762628|ref|ZP_06091196.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16] gi|52215331|dbj|BAD47924.1| probable DNA polymerase III epsilon chain [Bacteroides fragilis YCH46] gi|60492101|emb|CAH06864.1| putative exonuclease [Bacteroides fragilis NCTC 9343] gi|263255236|gb|EEZ26582.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16] Length = 175 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 8/175 (4%) Query: 9 KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 D ET TG + G V + D T+ + + P + + +HGIT Sbjct: 5 FAAIDFETATGYMESACAV---GIVTVTDGEITDE-YYSLIQPPENEYWRANMLVHGITP 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P F +I+ E +V + ++ D L + Sbjct: 61 GMTESLPGFHAIYPEVKKRLQGNVVVAHNEQFDRNVLKNTMRMYGLDYDELSLPERWECT 120 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R +L++ C+R G H AL D+ + +Y+ + ++ Sbjct: 121 CRIYRSLGYKPVNLSACCEREG---IELKHHEALSDARGCAKLYLNFLEKYRPLS 172 >gi|295089927|emb|CBK76034.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Clostridium cf. saccharolyticum K10] Length = 347 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 10/176 (5%) Query: 9 KIVFDIE----TTGLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 IV D+E + G ++ DR IIEIGAV+L + + F + P + + Sbjct: 4 YIVLDLEWNQSSGGREASIDRLPFEIIEIGAVKLDENLRIVSEFSRLVRPQVYRTLHYKI 63 Query: 61 KLHGI--TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 ++ ++ F + EF+D+ + N + Sbjct: 64 SEVTHLTAEQLEREGQKFETAVKEFFDWCGNDCRFCTWGSMDLTELQRNMVYHGMELPFQ 123 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P D I +++ + R H AL D+ V KM Sbjct: 124 KPLYYFDLQKIYSLIQGNTKRESLDTAVLEMGIEEERPFHRALDDAWYTGLVMGKM 179 >gi|161613571|ref|YP_001587536.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|198244129|ref|YP_002215209.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|161362935|gb|ABX66703.1| hypothetical protein SPAB_01291 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197938645|gb|ACH75978.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326622957|gb|EGE29302.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 232 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + + P + + Sbjct: 59 ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLP-------ELPGEWICTMKLSRRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPPGLHYHRALYDCYITAALLIDIMRT 153 >gi|331006083|ref|ZP_08329419.1| Ribonuclease T [gamma proteobacterium IMCC1989] gi|330420120|gb|EGG94450.1| Ribonuclease T [gamma proteobacterium IMCC1989] Length = 201 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP---NGRKNSPEALKL 62 +V D+ET G +S+ D ++E+ A + + D ++ ++ + P + S Sbjct: 11 VVIDVETGGFNSRTDALLEVSAATLAMDDEGILSIDQLYEYHVTPFEGANIEQSALDFTG 70 Query: 63 HGITDEFLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + + P + + + A +AHNA FD+GF+N +R Sbjct: 71 IDLENPDRNAIPEEDMLNELFRVIRKAVKRNDCTRAIMVAHNAHFDLGFVNEAAERCGMK 130 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L C+ I S++ H A D+ ++++ ++ Sbjct: 131 RNPFHPFSCMDTATLSGLAFGHTVLAQACQLAKIGFSNKEAHAASYDTRKTAELFCVIVN 190 Query: 177 GGSQIN 182 ++ Sbjct: 191 RWQELG 196 >gi|328464770|gb|EGF36087.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus MTCC 5462] Length = 140 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 5/99 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + K + V + +F + P + P+ +++HGIT Sbjct: 1 MDFIAMDFET--ANRKRASACSLALVVVQQNRVV-DSFYTLINPQMQ-FDPQNIRIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + ++++P+F F AHNA FDV Sbjct: 57 PDMVQNQPTF-DRVWPHIQMFYTPGRIVTAHNAPFDVSV 94 >gi|320528160|ref|ZP_08029325.1| DNA polymerase III subunit epsilon domain protein [Solobacterium moorei F0204] gi|320131508|gb|EFW24073.1| DNA polymerase III subunit epsilon domain protein [Solobacterium moorei F0204] Length = 186 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 71/178 (39%), Gaps = 10/178 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65 + + D ET +++ + +G + D + + P SP +++HGI Sbjct: 3 KIVAIDFET--ANNQMASVCSVGVAVMEDGVII-DHYYSLIKPEENVGYFSPYNIRIHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T +K P+FS I+SE +F + A +AHNA+FD+ + K Sbjct: 60 TARDVKGAPTFSEIYSELTGYFED--AVIVAHNARFDMSCLKQTCLNTGKKIPVLEYFDT 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 R + LN +C+ G H AL D++ ++ + +M + + Sbjct: 118 VELCKRVFSNLEHHRLNDVCEYIG---IELDHHNALSDANGCLEIVMAVMNLIGEYDI 172 >gi|313681812|ref|YP_004059550.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense DSM 16994] gi|313154672|gb|ADR33350.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense DSM 16994] Length = 232 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 8/67 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ETTGL++K DRI +G + + + P G+K P + +H IT+E Sbjct: 2 IFLDTETTGLEAK-DRICALGMIT------EDEAHYELINP-GKKIPPSSSAIHHITNEM 53 Query: 70 LKDKPSF 76 +KD P+F Sbjct: 54 VKDAPAF 60 >gi|262273303|ref|ZP_06051118.1| putative exonuclease [Grimontia hollisae CIP 101886] gi|262222676|gb|EEY73986.1| putative exonuclease [Grimontia hollisae CIP 101886] Length = 198 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 13/174 (7%) Query: 7 MR-----KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 MR I D ETTGL ++ I E A++ + P + EA Sbjct: 18 MRDVLANAITIDTETTGLG-EDAEICEFAAIDGRGNVLI----NTLIKP-SKPIPAEATA 71 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGIT++ ++ P++ + +NA++D+ I + Sbjct: 72 IHGITNDMVETAPTWLEVEGMIAGLLVS--RPVAIYNAEYDIRVIWQTSMISHGKDRAVP 129 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ A C H+ A + + + + + Sbjct: 130 DELERSINATCIMLEYAEYRGEWCDSRHQYRWHKLTAAAAHEGVTVEENAHRAL 183 >gi|326693810|ref|ZP_08230815.1| DNA polymerase III, epsilon subunit [Leuconostoc argentinum KCTC 3773] Length = 177 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 5/152 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + + + + + + F + P S +HGI Sbjct: 1 MNFVAMDFET--ANHEKHSAVSMALAVVRQNEVVDE-FYSLIQPET-YFSARNTAIHGIR 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ + P F ++ +AHNA FD G + L + + Sbjct: 57 EQDVAQAPKF-PEIWAQVSPLFTEDKLVVAHNAPFDHGVLQGTLAYYGIEAPHYMLLDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158 S + + LN++ + GIT+ H Sbjct: 116 RSSRQLFPHFRNHKLNTVAENLGITLDHHHNA 147 >gi|227504454|ref|ZP_03934503.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC 6940] gi|227199102|gb|EEI79150.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC 6940] Length = 214 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 3/167 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETT LD + I+ IG V + V + +++ +H +T + Sbjct: 29 AVDMETTSLDPREGAIVSIGWVPINGGVIDLGGADYVLIKGATAGQIEQSVHIHMLTQDV 88 Query: 70 LKDKPSFSSIFSEFWDFFNEQN--AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + S + + A + A F + + + ++ Sbjct: 89 VDAGVAEKEGISRLREALQGRALLAHFAALEVGFLKAACKRIYGAAPRLDVVDTFALERR 148 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + R DL R + + H AL D+ +++++ M Sbjct: 149 HMERMATYPRGEDLRLARVRQRYGLPNYGNHNALSDAQACAELFLAM 195 >gi|227510619|ref|ZP_03940668.1| DNA-directed DNA polymerase III [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190271|gb|EEI70338.1| DNA-directed DNA polymerase III [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 177 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 10/176 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M D ET ++K + + + T+ F + P S + +HGI Sbjct: 1 MNFAAMDFET--ANAKRASACSLALAIVRNNQVTHE-FYSLINPET-DFSWRNINVHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + P+F + N +AHNA FD + L+R + + Sbjct: 57 KQDVANAPTF-PELWDHIAPLFTANKLVVAHNASFDNSVLKRTLERYDLLLPHYLTLDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + + + LN++C I + H + ++ Q Sbjct: 116 KTSKQFYPQMVNHKLNTVCDELHIELEHHHNALDDSVACANI-----LLTQQQQFG 166 >gi|255690157|ref|ZP_05413832.1| exonuclease [Bacteroides finegoldii DSM 17565] gi|260624444|gb|EEX47315.1| exonuclease [Bacteroides finegoldii DSM 17565] Length = 184 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 7/167 (4%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR D ET + K I +G V + + N+ + + P + +HG+ Sbjct: 1 MRNFAAIDFET--ANGKRTSICSVGVVIVKEGKIINKIY-RLIRPAPNYYTQWTTAVHGL 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + + F +++E + +AHN+ FD G + A + Sbjct: 58 TYDDTIEADDFPEVWAEIKPLIDG--LPLVAHNSPFDEGCLRAVHELYGMTYPPYKFYCT 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + N + H AL D+ + + + Sbjct: 116 CRASRKVFGKELPNHQLHTVAAR-CGYDLTNHHHALADAEACAQIAL 161 >gi|157145382|ref|YP_001452701.1| exodeoxyribonuclease X [Citrobacter koseri ATCC BAA-895] gi|157082587|gb|ABV12265.1| hypothetical protein CKO_01122 [Citrobacter koseri ATCC BAA-895] Length = 220 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 60/167 (35%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++ + P+ R SP+A+ +H I++ + Sbjct: 4 VIDTETCGL---QGGIVEIASVDVVAGRIV-NPMSHLVRPD-RPISPQAMAIHRISESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I + ++AHNA FD + + Sbjct: 59 ADKPWIEDII-----PLYHGSEWYVAHNASFDRRVLPEMPGEWICT-------MKLSRRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|116070417|ref|ZP_01467686.1| Exonuclease [Synechococcus sp. BL107] gi|116065822|gb|EAU71579.1| Exonuclease [Synechococcus sp. BL107] Length = 285 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 16/25 (64%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL 35 + D ETTGL+ +N +E+GA+ Sbjct: 58 IIDTETTGLEPENHCCVEVGAILFD 82 >gi|304396962|ref|ZP_07378842.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. aB] gi|308188276|ref|YP_003932407.1| oligoribonuclease [Pantoea vagans C9-1] gi|304355758|gb|EFM20125.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. aB] gi|308058786|gb|ADO10958.1| oligoribonuclease [Pantoea vagans C9-1] Length = 182 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/30 (50%), Positives = 18/30 (60%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M N+ I D+E TGLD +DRIIEI Sbjct: 1 MATGNEQNLIWIDLEMTGLDPTHDRIIEIA 30 >gi|291087532|ref|ZP_06346731.2| exonuclease family protein [Clostridium sp. M62/1] gi|291074686|gb|EFE12050.1| exonuclease family protein [Clostridium sp. M62/1] Length = 350 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 10/176 (5%) Query: 9 KIVFDIE----TTGLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 IV D+E + G ++ DR IIEIGAV+L + + F + P + + Sbjct: 7 YIVLDLEWNQSSGGREASIDRLPFEIIEIGAVKLDENLRIVSEFSRLVRPQVYRTLHYKI 66 Query: 61 KLHGI--TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 ++ ++ F + EF+D+ + N + Sbjct: 67 SEVTHLTAEQLEREGQKFETAVKEFFDWCGNDCRFCTWGSMDLTELQRNMVYHGMELPFQ 126 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P D I +++ + R H AL D+ V KM Sbjct: 127 KPLYYFDLQKIYSLIQGNTKRESLDTAVLEMGIEEERPFHRALDDAWYTGLVMGKM 182 >gi|104780960|ref|YP_607458.1| exonuclease [Pseudomonas entomophila L48] gi|95109947|emb|CAK14652.1| putative exonuclease [Pseudomonas entomophila L48] Length = 183 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 5/113 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 +V D+E TT G IIEIGA + + FQ F+ P R +P +L Sbjct: 4 WLVIDLEATTDDGGWPVTEMEIIEIGASLVTREGREVDHFQRFVRPRRRPQLTPFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I+ + + FS ++ +F + A+ A + D + Sbjct: 64 HISQADVDNATPFSEVWGQFERWLVNHQAQLQAWVSWGDYDRKQLLQEWQVHH 116 >gi|34498401|ref|NP_902616.1| DNA polymerase III subunit epsilon [Chromobacterium violaceum ATCC 12472] gi|34104255|gb|AAQ60614.1| probable DNA polymerase III [Chromobacterium violaceum ATCC 12472] Length = 202 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Query: 9 KIV-FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51 ++V D ETT L+ ++ +GAV+L D + + + P+ Sbjct: 29 EVVSLDCETTSLNVSEAELLSVGAVKLRGDRILHSEALYLLVKPD 73 >gi|87121437|ref|ZP_01077326.1| DNA polymerase III subunit epsilon [Marinomonas sp. MED121] gi|86163280|gb|EAQ64556.1| DNA polymerase III subunit epsilon [Marinomonas sp. MED121] Length = 242 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D+ETTGL S+ D I+ +G+V + + + + P G S +++ +H +T Sbjct: 56 IALDLETTGLKSQKDTIVSVGSVAMNAKRIRCASSNYWVVNP-GAPLSAQSITIHELTHS 114 Query: 69 FLKDKPSFSSIFSEFWDFF 87 ++ P S F D Sbjct: 115 DVEQAPPLSRYFEAILDAL 133 >gi|227487300|ref|ZP_03917616.1| DNA polymerase III subunit epsilon [Corynebacterium glucuronolyticum ATCC 51867] gi|227542721|ref|ZP_03972770.1| DNA polymerase III subunit epsilon [Corynebacterium glucuronolyticum ATCC 51866] gi|227092726|gb|EEI28038.1| DNA polymerase III subunit epsilon [Corynebacterium glucuronolyticum ATCC 51867] gi|227181487|gb|EEI62459.1| DNA polymerase III subunit epsilon [Corynebacterium glucuronolyticum ATCC 51866] Length = 312 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 47/143 (32%), Gaps = 5/143 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I I+TTGL RI+ I AV TF + P P LHG+ Sbjct: 5 FIALTIQTTGLHPSTARIVTIDAVTFDAEGTPVDTFFTMVNP---VTDPGPRHLHGVPRA 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ F + + I HNA GFI +E +R K Sbjct: 62 EVEAARPFGHFLKKLCTLLDG--RTLITHNAPQTWGFIVSESKRTLKARRRKRGGRRRRG 119 Query: 129 IARRKHPSSRNDLNSLCKRYGIT 151 + P + D +R GI Sbjct: 120 VGHVPRPVAVVDTLGAARREGIF 142 >gi|254252896|ref|ZP_04946214.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia dolosa AUO158] gi|124895505|gb|EAY69385.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia dolosa AUO158] Length = 207 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 15/29 (51%), Positives = 20/29 (68%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGLD NDRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43 >gi|127510985|ref|YP_001092182.1| DNA polymerase III subunit epsilon [Shewanella loihica PV-4] gi|126636280|gb|ABO21923.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica PV-4] Length = 239 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 1/52 (1%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63 D ETTGL+ D I+ IG V NR + P + + Sbjct: 53 DFETTGLNVDKDDIVSIGTVPFTLRRIFLNRAQHWTVRPREQLAEESVIIHG 104 >gi|71281998|ref|YP_270147.1| ribonuclease T [Colwellia psychrerythraea 34H] gi|71147738|gb|AAZ28211.1| ribonuclease T [Colwellia psychrerythraea 34H] Length = 231 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 72/197 (36%), Gaps = 14/197 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-----RTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S+ D ++E+ A L T T Q + P G P+AL+ Sbjct: 34 VVIDVETAGFNSQTDALLELAASVLHLDEDTGDFSIDETIQFNIEPFEGANLEPKALEFT 93 Query: 64 GITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 GI + + + Q A +AHNA FD+GF+NA +R Sbjct: 94 GIDPTNPLRGAVDEDEALKDLFKLVRKKMKVAGCQRAIIVAHNAAFDLGFLNAATERCKI 153 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + L C I ++ H AL D+ ++++ ++ Sbjct: 154 KRSPFHSFVSFDTTTLAGLALGQTVLAKACIAAKIDFNNSEAHSALYDTEKTAELFCHIV 213 Query: 176 VGGSQINFGFKTNEDRF 192 + E+ Sbjct: 214 NKWRALGGWPIAVEETE 230 >gi|13242597|ref|NP_077611.1| EsV-1-126 [Ectocarpus siliculosus virus 1] gi|13177400|gb|AAK14544.1|AF204951_126 EsV-1-126 [Ectocarpus siliculosus virus 1] Length = 206 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 66/197 (33%), Gaps = 22/197 (11%) Query: 7 MRKIVFDIETTGLDSKN-----------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M ++ FD+ETTGL + R++ I V L D P Sbjct: 1 MPELFFDVETTGLPPRKANPETFEQYDSCRVVSIAWV-LRDEKTVYSQRYSVTDPGIADE 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD----------VGF 105 + A +HGI+ E + + + + + +++ + +AHN FD +G Sbjct: 60 NIGAEFVHGISREVMDRYGNATKVVLSDFMADVDRSDKIVAHNLDFDRSVVSAELFRMGS 119 Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 + + ++ L + L + S + + + H A+ D Sbjct: 120 SDDARRLMSFKSLCTMKSTTNLVRIPNSYGSYKWPKLEELHEFLFGHVFENAHHAMCDVD 179 Query: 166 LLSDVYIKMMVGGSQIN 182 + Y ++ + Sbjct: 180 AMVKCYFTLLEKHTSSK 196 >gi|262382001|ref|ZP_06075139.1| exonuclease [Bacteroides sp. 2_1_33B] gi|262297178|gb|EEY85108.1| exonuclease [Bacteroides sp. 2_1_33B] Length = 192 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 74/183 (40%), Gaps = 19/183 (10%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGI 65 M+ + FD+ETTG+ + + +I E++ T +F +CP+ + EAL++ + Sbjct: 1 MKLLFFDLETTGIKYWRNGVHQISG-EIVIDGVTKESFNFNVCPHPQCEIEEEALRICNV 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-----------------A 108 + E ++ P ++ +F + ++ ++ + F VG+ N Sbjct: 60 SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQNGDH 119 Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 ++ T + R++H + ++ + GI I H A D L Sbjct: 120 YFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLTK 179 Query: 169 DVY 171 ++Y Sbjct: 180 EIY 182 >gi|167041229|gb|ABZ05986.1| putative exonuclease [uncultured marine microorganism HF4000_001N02] Length = 299 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 8/97 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTGLD++ DRI++ L+ + P R A ++HGI++E Sbjct: 42 FDLETTGLDARKDRIVQYA---LIGSDVDGSHINLASLVDP-RRGIPTAASRIHGISEED 97 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 ++ SF + + + A + HN Sbjct: 98 VRGVGSFETHVGAISELIED--AVIVGHNISNFDWRF 132 >gi|168238504|ref|ZP_02663562.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735808|ref|YP_002114913.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930999|ref|ZP_03221825.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194711310|gb|ACF90531.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288686|gb|EDY28061.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320043|gb|EDZ05248.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322616877|gb|EFY13785.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618116|gb|EFY15008.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625787|gb|EFY22606.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626239|gb|EFY23049.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632652|gb|EFY29397.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638997|gb|EFY35690.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640437|gb|EFY37090.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644201|gb|EFY40746.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649525|gb|EFY45957.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655432|gb|EFY51740.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660811|gb|EFY57042.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662892|gb|EFY59099.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668077|gb|EFY64236.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674164|gb|EFY70258.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675483|gb|EFY71557.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683103|gb|EFY79119.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686797|gb|EFY82775.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195312|gb|EFZ80492.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199204|gb|EFZ84299.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202983|gb|EFZ88016.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207461|gb|EFZ92409.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213958|gb|EFZ98726.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217444|gb|EGA02163.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219962|gb|EGA04435.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323231467|gb|EGA15580.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235907|gb|EGA19986.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240478|gb|EGA24521.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245369|gb|EGA29369.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246734|gb|EGA30706.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253590|gb|EGA37418.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255358|gb|EGA39128.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260250|gb|EGA43871.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266842|gb|EGA50328.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269048|gb|EGA52504.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 232 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + + Sbjct: 59 ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLPELPGEWICT-------MKLSRRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRT 153 >gi|170050189|ref|XP_001859612.1| oligoribonuclease [Culex quinquefasciatus] gi|167871717|gb|EDS35100.1| oligoribonuclease [Culex quinquefasciatus] Length = 214 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 7/62 (11%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70 D+E TGL+ + DRIIEI + TN+ V P+ + P + + Sbjct: 41 IDLEMTGLNVETDRIIEIACI------VTNKNLDVLERGPDIVIHEPAQIMEAMNEWCKV 94 Query: 71 KD 72 Sbjct: 95 NH 96 >gi|222149115|ref|YP_002550072.1| DNA polymerase III epsilon subunit-like 3-5 exonuclease [Agrobacterium vitis S4] gi|221736100|gb|ACM37063.1| DNA polymerase III epsilon subunit-like 3-5 exonuclease [Agrobacterium vitis S4] Length = 207 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 61/206 (29%), Gaps = 8/206 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + I D ET + + +G + + R + + P + S + +HGI Sbjct: 8 KIIAIDFET--ANEERGSACSVGLAFVENGQVV-RVEERLIRPKTMRFSSFNIAIHGIRP 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++D F + EF D F+ V + +L R L + Sbjct: 65 DHVEDAGEFPEVMDEFADDFSGAMVVAHNAAFDLSVWRASCDLYRQPYPSLSYVCSVKLA 124 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + PS R ++ + + H A D+ + + I MM + G Sbjct: 125 QKVWPQLPSHRLNVLAAHLQL-----SFRHHNAAEDASVCAQAVIAMMERRGAQDLGELA 179 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF 213 S R Sbjct: 180 GMMGISIGRLFPGGYQSCSVRKPARV 205 >gi|3885327|gb|AAC77855.1| hypothetical protein [Arabidopsis thaliana] Length = 227 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN 41 D+E TGL+ + DRI+EI + + + T Sbjct: 30 IDLEMTGLNVEVDRILEIACI-ITNGDLTQ 58 >gi|83720885|ref|YP_442207.1| oligoribonuclease [Burkholderia thailandensis E264] gi|83654710|gb|ABC38773.1| oligoribonuclease [Burkholderia thailandensis E264] Length = 229 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 19/29 (65%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGL+ DRIIEI V Sbjct: 43 RNELNLVWLDMEMTGLNPDTDRIIEIAVV 71 >gi|301162194|emb|CBW21739.1| putative exonuclease [Bacteroides fragilis 638R] Length = 175 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 8/175 (4%) Query: 9 KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 D ET TG + G V + D T+ + + P + + +HGIT Sbjct: 5 FAAIDFETATGYMESACAV---GIVTVTDGEITDE-YYSLIQPPENEYWRANMLVHGITP 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P F +I+ E + +V + ++ D L + Sbjct: 61 GMTESLPGFHAIYPEVKKRLQGKVVVAHNEQFDRNVLKNTMRMYGLDYDELSLPERWECT 120 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R +L++ C+R G H AL D+ + +Y+ + ++ Sbjct: 121 CRIYRSLGYKPVNLSACCEREG---IELKHHEALSDARGCAKLYLNFLEKYRPLS 172 >gi|167581087|ref|ZP_02373961.1| oligoribonuclease [Burkholderia thailandensis TXDOH] Length = 201 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 19/29 (65%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGL+ DRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLNPDTDRIIEIAVV 43 >gi|190892568|ref|YP_001979110.1| DNA polymerase III protein, epsilon subunit [Rhizobium etli CIAT 652] gi|190697847|gb|ACE91932.1| probable DNA polymerase III protein, epsilon subunit [Rhizobium etli CIAT 652] Length = 196 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 5/150 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I D ET + + +G + + T R + + P + S + +HGI Sbjct: 1 MKTIAIDFET--ANEQRGSACSVGLAWIEEGRVT-RVEERLIRPRDMRFSGMNIAIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++D P F + EF + + AHNA FD A L + + + + Sbjct: 58 PEHVEDAPEFPEVMDEFHEDISGATMI--AHNAAFDFSVWRASLDLYRQSYPELTYLCSL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156 R + LN + + G+ H + Sbjct: 116 KMAQRIWPHFLSHRLNLIAEHLGLRFMHHN 145 >gi|149190662|ref|ZP_01868930.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1] gi|148835545|gb|EDL52514.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1] Length = 176 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 7/168 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETT LD I+ I A +++ + T+ F+V L S + + Sbjct: 2 DCETTSLDPSVAEIVTIAATKIIDNRIITSDPFEVRL---SAPKSLGEDSVKIHHITHDE 58 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 K S + N + ++ ++D ++ ++ PL I + Sbjct: 59 LKHGISEKQAMSALLNFIGNRPLVGYHIRYDKKILDRAAKKHLGFPLPNELIEVSQIYND 118 Query: 132 ---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + P+ DL+ + I + KH AL D+ + VY+K+ Sbjct: 119 KLLKLLPNGYFDLSLEAICRHLQIPNYHKHDALEDAKAAAMVYLKLTR 166 >gi|33519827|ref|NP_878659.1| ribonuclease T [Candidatus Blochmannia floridanus] gi|54036331|sp|Q7VR55|RNT_BLOFL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|33504172|emb|CAD83434.1| ribonuclease T [Candidatus Blochmannia floridanus] Length = 223 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 60/187 (32%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLC--PNGRKNSPEALKLH 63 +V D+ET+GL++ + ++EI + L + + + P Sbjct: 20 VVIDVETSGLNASTNALLEIATITLKMNEDGWLHVDNMLHFHIKSFPGAILQPEALALNK 79 Query: 64 -------GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + + A +AHNA FD F+ A +R N Sbjct: 80 INPNSPLRFAVTEQEALVEIFKMVHVGIKAQQCNKAIIVAHNASFDHSFLMAATERTNNI 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +P T A + S C+ GI H AL D+ + ++ ++ Sbjct: 140 QDNPFHPFVTFDTAALSGLVFGQTVLSKACEYAGIIFDKNKAHSALYDAEKTAILFCTLV 199 Query: 176 VGGSQIN 182 ++ Sbjct: 200 NAWKKLG 206 >gi|156346891|ref|XP_001621564.1| hypothetical protein NEMVEDRAFT_v1g248663 [Nematostella vectensis] gi|156207642|gb|EDO29464.1| predicted protein [Nematostella vectensis] Length = 460 Score = 46.1 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 12/22 (54%), Positives = 17/22 (77%) Query: 10 IVFDIETTGLDSKNDRIIEIGA 31 ++FD ETTGLD+ ND II++ Sbjct: 157 VMFDTETTGLDTSNDDIIQLAC 178 >gi|27378800|ref|NP_770329.1| hypothetical protein bsl3689 [Bradyrhizobium japonicum USDA 110] gi|27351949|dbj|BAC48954.1| bsl3689 [Bradyrhizobium japonicum USDA 110] Length = 68 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 18/26 (69%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL 35 I+ D+ETTGLD D +IE+G V+ Sbjct: 6 ILIDVETTGLDQHEDEVIELGMVKFD 31 >gi|224541140|ref|ZP_03681679.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM 15897] gi|224525949|gb|EEF95054.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM 15897] Length = 297 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 11/183 (6%) Query: 11 VFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +FDIE + ND + IG V L D K TF + P P K+H I + Sbjct: 7 IFDIE----ELNNDPVSVCSIGIVVLED-MKVKETFYSLIRPPKLTFDPYRYKVHKIRPQ 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK +P+F I+ + +F +N+ I+H+ + D+ + A +R + Sbjct: 62 DLKKQPTFPEIWPKISKYF--ENSIVISHDIQSDLNHLLAVFRRFRIRKPTCYLSCTLVL 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L SLC Y ++ + H AL DS +++ KMM + Sbjct: 120 AKLFHPELQKYGLGSLCDFY--SVDLENAHNALADSLACAELLKKMMEEHHYTSLKELHE 177 Query: 189 EDR 191 ++ Sbjct: 178 KEN 180 >gi|167624484|ref|YP_001674778.1| exonuclease RNase T and DNA polymerase III [Shewanella halifaxensis HAW-EB4] gi|167354506|gb|ABZ77119.1| Exonuclease RNase T and DNA polymerase III [Shewanella halifaxensis HAW-EB4] Length = 205 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 52/166 (31%), Gaps = 1/166 (0%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+E TGLD + D+I+ IG + + + ++ + + +G + Sbjct: 24 AVDLEMTGLDCQFDQILSIGLIPIHNGLLQVAKSQHLLVSIDGSVGDSATIHGILDNQLT 83 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + + A + F I + + + ++ + Sbjct: 84 QAVSAKQAMAWFLEQSKGHVLVAHHAPLDLCFLKTEIQRCYGQTMQFVAIDTMAVEKKRL 143 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R+ L R + + H A +D+ ++ + M Sbjct: 144 LRQHDVIKEGTLRLDACRQRYGLPVYTAHNAAVDALACGELLLAQM 189 >gi|328876923|gb|EGG25286.1| hypothetical protein DFA_03535 [Dictyostelium fasciculatum] Length = 369 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 8/129 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD ETTGL+ + D+IIEI + +L+ +F + P +S E Sbjct: 145 VFDTETTGLEFE-DQIIEITFINILN----GDSFYGKVKPTVPLSSESYCAHGISLKELD 199 Query: 71 KDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRIIDTL 127 F+ + + IAHN FD +++ P D I+++ Sbjct: 200 NCLEWESLQGKLDSFFQQYIDHKIVIIAHNVTFDRYKLWKMVKDQVHCIPFDKIIFINSI 259 Query: 128 SIARRKHPS 136 I P Sbjct: 260 EIFLSFGPF 268 >gi|327479722|gb|AEA83032.1| exonuclease I [Pseudomonas stutzeri DSM 4166] Length = 477 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 16/173 (9%), Positives = 41/173 (23%), Gaps = 6/173 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGR--KNSPEALKLHGITDEF 69 D ETTG+ DR +++ + + ++ P + L Sbjct: 9 DFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLVTGITPAVL 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + + +N+ + F + + + Sbjct: 69 QQKGMCEAQFVHHLHRELSTPGTCGAGYNS---LRFDDEVTRYSLYRNFYDPYAREWQGG 125 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R + GI L L + ++ + ++ Sbjct: 126 NSRWDLIDLVRTAYALRPEGIGWPEDDGRVTLKLERLSAANGLEHLNAHDALS 178 >gi|300173608|ref|YP_003772774.1| DNA-directed DNA polymerase III subunit epsilon [Leuconostoc gasicomitatum LMG 18811] gi|299887987|emb|CBL91955.1| DNA-directed DNA polymerase III, epsilon chain (Putative) [Leuconostoc gasicomitatum LMG 18811] Length = 177 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 5/165 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + + + I + D ++ F + P S +HG+ Sbjct: 1 MNFIAMDFET--ANHEKYSAVSIAIAIVRDNQVVDK-FYSLIKPET-YFSSRNTAVHGLR 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P F + N +AHNA FD + L + + Sbjct: 57 ESDVIDAPKF-PEIWQIISPLFRDNKLVVAHNAAFDNNILKGTLAHYGIEEPHYMLLDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + + LN++ GIT+ H + +Y Sbjct: 116 RTSRKLFPKFENHKLNTVANNLGITLDHHHNALDDAVAAANILIY 160 >gi|229597251|ref|YP_001908888.2| oligoribonuclease [Erwinia tasmaniensis Et1/99] Length = 187 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 17/29 (58%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N I D+E TGL+ + DRIIEI Sbjct: 1 MTANANNLIWIDLEMTGLNPEQDRIIEIA 29 >gi|157147866|ref|YP_001455185.1| oligoribonuclease [Citrobacter koseri ATCC BAA-895] gi|166230513|sp|A8AMN6|ORN_CITK8 RecName: Full=Oligoribonuclease gi|157085071|gb|ABV14749.1| hypothetical protein CKO_03672 [Citrobacter koseri ATCC BAA-895] Length = 181 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|146281544|ref|YP_001171697.1| exonuclease I [Pseudomonas stutzeri A1501] gi|145569749|gb|ABP78855.1| exodeoxyribonuclease I [Pseudomonas stutzeri A1501] Length = 477 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 16/173 (9%), Positives = 41/173 (23%), Gaps = 6/173 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGR--KNSPEALKLHGITDEF 69 D ETTG+ DR +++ + + ++ P + L Sbjct: 9 DFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLVTGITPAVL 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + + +N+ + F + + + Sbjct: 69 QQKGMCEAQFVHHLHRELSTPGTCGAGYNS---LRFDDEVTRYSLYRNFYDPYAREWQGG 125 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R + GI L L + ++ + ++ Sbjct: 126 NSRWDLIDLVRTAYALRPEGIGWPEDDGRVTLKLERLSAANGLEHLNAHDALS 178 >gi|270160326|ref|ZP_06188980.1| exonuclease/polymerase-like protein [Legionella longbeachae D-4968] gi|308051563|ref|YP_003915137.1| putative exonuclease [Legionella longbeachae NSW150] gi|269987175|gb|EEZ93432.1| exonuclease/polymerase-like protein [Legionella longbeachae D-4968] gi|288859988|emb|CBJ13980.1| putative exonuclease [Legionella longbeachae NSW150] Length = 301 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 10/176 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + D+ET G+D+ IIEIG + D + L G+ PE K+ GI Sbjct: 41 IIDLETMGMDATQHEIIEIGMLSFSFSNEDGILEIKHTYNELNDPGKPIPPEITKITGIR 100 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + K +I F +++ I HNA+FD F+ + + + T Sbjct: 101 NEDVSGK----AINWTFVFQVLKESHLIICHNAQFDRNFLELQTPEEIQKQVTSLPFGCT 156 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + K + H A+ D ++ ++ ++ Sbjct: 157 IKDIDWKERDYESSKLDYLNWK--LGYFYDGHRAINDCWATLNLLLQEQGAFDELK 210 >gi|313834343|gb|EFS72057.1| hypothetical protein HMPREF9617_00767 [Propionibacterium acnes HL056PA1] Length = 192 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 37/161 (22%), Gaps = 10/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDE 68 ++ D ETT LD RIIEI + + T + P P A Sbjct: 12 VILDTETTDLD---GRIIEISII----DAATGTVLMDQLINPTLLDIPPGAEWAIRRPHT 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L ++ + + E + + + + T Sbjct: 65 VLLPVRVRLGATNQSTTH-HTAHGERTTPRQEKMKRHHCRKHKESPGFGPHKAGQ-PTGG 122 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 R + L + G L Sbjct: 123 RGSRSKVLAPFFLRKVYHVRGHVSKEDIWGKNCHGCWLTRK 163 >gi|299472855|emb|CBN80424.1| EsV-1-126 [Ectocarpus siliculosus] Length = 206 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 67/195 (34%), Gaps = 22/195 (11%) Query: 7 MRKIVFDIETTGLDSKN-----------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M ++ FD+ETTGL + R++ I V L D P + Sbjct: 1 MPELFFDVETTGLPPRKANPETFEQYDSCRVVSIAWV-LRDQKTVYSQRYSVTDPGIADD 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD----------VGF 105 + A +HGI+ + + S+ + ++ + +AHN FD +G Sbjct: 60 NIGAEFVHGISRAVMDRYGNAVSVVLSDFMADVNKSDKIVAHNLDFDRSVVSAELFRMGS 119 Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 + + ++ + L + L + S + ++ + H A+ D Sbjct: 120 ADDARRLMSFNSLCTMKSTTNLVRIPNSYGSYKWPKLEELHKFLFGHVFENAHHAMCDVD 179 Query: 166 LLSDVYIKMMVGGSQ 180 + Y ++ + Sbjct: 180 AMVKCYFTLLEKHAS 194 >gi|296273413|ref|YP_003656044.1| exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis DSM 7299] gi|296097587|gb|ADG93537.1| Exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis DSM 7299] Length = 252 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 2/119 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++FD ETTG + + DRII++GA+ + + + + + D Sbjct: 3 KYVLFDTETTG-NQEEDRIIQLGAMIVDAKAPV-EVYDELCFSDVEIKLEAMEVHNITPD 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + F + +N + IAHN FD+G I E LD R Sbjct: 61 MIIGKPEATQTKFYQKLQEYNNPSNYLIAHNINFDLGMIKKEGFESQYQILDTLRCAQH 119 >gi|229014710|ref|ZP_04171818.1| exonuclease [Bacillus mycoides DSM 2048] gi|228746575|gb|EEL96470.1| exonuclease [Bacillus mycoides DSM 2048] Length = 181 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 11/144 (7%) Query: 5 NKM-----RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 NKM + ++ D ETTGL + D+II+I + L + P EA Sbjct: 16 NKMFINIDQFVILDTETTGL-TLRDQIIDISVINLSGKIL----LNSLVKP-TINIPAEA 69 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGIT+E + PS+++I+ E + + + + + Sbjct: 70 ASIHGITNEMVHGAPSWTAIYKELREVTVGKTLLIYNAEFDLGMIENTCIANNVEFNNFK 129 Query: 120 PSRIIDTLSIARRKHPSSRNDLNS 143 + ++ + + Sbjct: 130 STCVMKMYADYVDSKRWISLSDAT 153 >gi|162449983|ref|YP_001612350.1| exonuclease [Sorangium cellulosum 'So ce 56'] gi|161160565|emb|CAN91870.1| exonuclease [Sorangium cellulosum 'So ce 56'] Length = 298 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52 + D+E TGL ++DR+IE+ E + P Sbjct: 34 VFLDLEMTGLRPESDRVIEV-CAERTRGDACEDAITSLVRPEP 75 >gi|212634795|ref|YP_002311320.1| exonuclease [Shewanella piezotolerans WP3] gi|212556279|gb|ACJ28733.1| Exonuclease [Shewanella piezotolerans WP3] Length = 225 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK 39 D+E TGL+ + D+I+ IG V + + Sbjct: 44 AIDLEMTGLNVQFDQILSIGMVPIQNGML 72 >gi|15802257|ref|NP_288281.1| exodeoxyribonuclease X [Escherichia coli O157:H7 EDL933] gi|15831808|ref|NP_310581.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. Sakai] gi|168762363|ref|ZP_02787370.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501] gi|168788263|ref|ZP_02813270.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869] gi|217328801|ref|ZP_03444882.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588] gi|261227657|ref|ZP_05941938.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. FRIK2000] gi|261258177|ref|ZP_05950710.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. FRIK966] gi|12515897|gb|AAG56834.1|AE005407_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13362022|dbj|BAB35977.1| exonuclease X [Escherichia coli O157:H7 str. Sakai] gi|189367397|gb|EDU85813.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501] gi|189372044|gb|EDU90460.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869] gi|209767640|gb|ACI82132.1| exonuclease X [Escherichia coli] gi|217318148|gb|EEC26575.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588] gi|320188544|gb|EFW63206.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC1212] gi|326342223|gb|EGD66004.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. 1044] Length = 220 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVHPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|295094549|emb|CBK83640.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Coprococcus sp. ART55/1] Length = 216 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Query: 7 MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M + D E +DS+ IIEIGAV+L + +F+ ++ P + Sbjct: 1 MIYVFVDFEMNMIDSEYKKEKKICKSEIIEIGAVKLDEDYNEIDSFKSYVKPAYGTMASR 60 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI 95 +KL GITD+ ++D PS++ F ++ + + + Sbjct: 61 IIKLTGITDDMVEDAPSYAFAMGSFIEWCADADVIYA 97 >gi|257138397|ref|ZP_05586659.1| oligoribonuclease [Burkholderia thailandensis E264] Length = 201 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 19/29 (65%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGL+ DRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLNPDTDRIIEIAVV 43 >gi|167619167|ref|ZP_02387798.1| oligoribonuclease [Burkholderia thailandensis Bt4] Length = 201 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 19/29 (65%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGL+ DRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLNPDTDRIIEIAVV 43 >gi|254295263|ref|YP_003061286.1| exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC 49814] gi|254043794|gb|ACT60589.1| Exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC 49814] Length = 192 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 12/90 (13%) Query: 8 RKIVFDIETTGLDSKNDR--IIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 R I D+ET + NDR I +IG V + ++ P+ S KLH Sbjct: 9 RFIALDVET----ANNDRASICQIGLACVGWDGEILI---WSTYVNPD-VSFSAFNTKLH 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAE 93 GI + ++ F ++ F + Sbjct: 61 GIGADTVRHAQMFPDVWGRLQPFLKQHAMV 90 >gi|238764684|ref|ZP_04625628.1| Oligoribonuclease [Yersinia kristensenii ATCC 33638] gi|238697080|gb|EEP89853.1| Oligoribonuclease [Yersinia kristensenii ATCC 33638] Length = 181 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + +N+ I D+E TGLD DRIIEI Sbjct: 1 MTENQNNLIWIDLEMTGLDPLRDRIIEIA 29 >gi|218672255|ref|ZP_03521924.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli GR56] Length = 197 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 5/151 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I D ET + + +G + + T R + + P + S + +HGI Sbjct: 1 MKTIAIDFET--ANEQRGSACSVGLAWIEEGRVT-RVEERLIRPRDMRFSGMNIAIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++D P F + EF D F AHNA FD A L + + + + Sbjct: 58 PEDVEDAPEFPEVMDEFHDDFRGATMI--AHNAAFDFSVWRASLDLYRQSYPELTYLCSL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSK 157 R + LN + + G Sbjct: 116 KMAQRIWPHFLSHRLNLIAEHLGPAFHASQC 146 >gi|269140407|ref|YP_003297108.1| Orf81 bacteriophage 186 [Edwardsiella tarda EIB202] gi|267986068|gb|ACY85897.1| Orf81 bacteriophage 186 [Edwardsiella tarda EIB202] Length = 199 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 60/148 (40%), Gaps = 8/148 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ETTG+ +N I+ ++ F + P + +HGIT+E + Sbjct: 32 ILDTETTGV-KENAEIVSAAIIDQDGTVL----FHSLIKP-VNPITEITTAIHGITNEMV 85 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +KP+++ + E N A + +NA+FD+ + + P+ + ++ A Sbjct: 86 AEKPTWAEVHDEIARILNT--APLVVYNAQFDMRMMAQSAAKHGLPPIVVNTEVNCAMEA 143 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKH 158 N+ + + ++++ + Sbjct: 144 YAHFYGQWNEEHQSYRWQSLSMAMFQQD 171 >gi|261885284|ref|ZP_06009323.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 243 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 2/38 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 V DIET+G + +IIEIGA++LLD + R F+ F+ Sbjct: 53 VVDIETSGG-INSGQIIEIGALKLLDGVEIGR-FESFV 88 >gi|118474671|ref|YP_892037.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp. fetus 82-40] gi|118413897|gb|ABK82317.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp. fetus 82-40] Length = 265 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 2/38 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 V DIET+G + +IIEIGA++LLD + R F+ F+ Sbjct: 75 VVDIETSGG-INSGQIIEIGALKLLDGVEIGR-FESFV 110 >gi|29654538|ref|NP_820230.1| oligoribonuclease [Coxiella burnetii RSA 493] gi|153208846|ref|ZP_01947070.1| oligoribonuclease [Coxiella burnetii 'MSU Goat Q177'] gi|154707040|ref|YP_001424673.1| oligoribonuclease [Coxiella burnetii Dugway 5J108-111] gi|161829936|ref|YP_001597086.1| oligoribonuclease [Coxiella burnetii RSA 331] gi|165921448|ref|ZP_02219636.1| oligoribonuclease [Coxiella burnetii RSA 334] gi|212212380|ref|YP_002303316.1| oligoribonuclease [Coxiella burnetii CbuG_Q212] gi|212218651|ref|YP_002305438.1| oligoribonuclease [Coxiella burnetii CbuK_Q154] gi|37999374|sp|Q83C93|ORN_COXBU RecName: Full=Oligoribonuclease gi|29541805|gb|AAO90744.1| oligoribonuclease [Coxiella burnetii RSA 493] gi|120575697|gb|EAX32321.1| oligoribonuclease [Coxiella burnetii 'MSU Goat Q177'] gi|154356326|gb|ABS77788.1| oligoribonuclease [Coxiella burnetii Dugway 5J108-111] gi|161761803|gb|ABX77445.1| oligoribonuclease [Coxiella burnetii RSA 331] gi|165916763|gb|EDR35367.1| oligoribonuclease [Coxiella burnetii RSA 334] gi|212010790|gb|ACJ18171.1| oligoribonuclease [Coxiella burnetii CbuG_Q212] gi|212012913|gb|ACJ20293.1| oligoribonuclease [Coxiella burnetii CbuK_Q154] Length = 183 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 11 LDLEMTGLDPERDRIIEIA 29 >gi|116074604|ref|ZP_01471865.1| Exonuclease [Synechococcus sp. RS9916] gi|116067826|gb|EAU73579.1| Exonuclease [Synechococcus sp. RS9916] Length = 317 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 64/217 (29%), Gaps = 10/217 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGLD + + +E+GA+ + + Q FL P + Sbjct: 91 ILDTETTGLDPETEHCLEVGAILFD--VPSRQVLAQQSFLLPVQANAAEP----INRIPA 144 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++ + +AHNA FD + P S Sbjct: 145 AVTRLAQPWEAALAYFQSLLDAAEVLVAHNAAFDRQWFGRGCLPSTAKPWLCSMDDMRWP 204 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVGGSQINFGFK 186 R+ +L + +HR+ + + + + +V G + F FK Sbjct: 205 KNRQLRARPSVRDLALAYEVPVWAAHRALTDCIYIAEVFRRCEDLEQRLVHGLEPRFLFK 264 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + + R++ E E Sbjct: 265 AQVSYDQRHLAREAGFRWNDPVPGAWTRRLSVREAKE 301 >gi|188030133|emb|CAO98019.1| Oligoribonuclease [Erwinia tasmaniensis Et1/99] Length = 193 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%) Query: 1 MIRKNKM-----RKIVFDIETTGLDSKNDRIIEIG 30 M ++ M I D+E TGL+ + DRIIEI Sbjct: 1 MPPRHTMTANANNLIWIDLEMTGLNPEQDRIIEIA 35 >gi|134295109|ref|YP_001118844.1| oligoribonuclease [Burkholderia vietnamiensis G4] gi|166215757|sp|A4JCK6|ORN_BURVG RecName: Full=Oligoribonuclease gi|134138266|gb|ABO54009.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia vietnamiensis G4] Length = 200 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 15/29 (51%), Positives = 20/29 (68%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGLD NDRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43 >gi|186682035|ref|YP_001865231.1| exonuclease, RNase T and DNA polymerase III [Nostoc punctiforme PCC 73102] gi|186464487|gb|ACC80288.1| Exonuclease, RNase T and DNA polymerase III [Nostoc punctiforme PCC 73102] Length = 187 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 60/179 (33%), Gaps = 9/179 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDY--SKTNRTFQVFLCPNGR 53 M K ++ D+E T D K IIEIGAV +L+ + + FQ F+ P Sbjct: 1 MQTKISHYYLIVDLEATCCDKKTIPRHEMEIIEIGAV-MLNRATWEIDSEFQQFIQPVRH 59 Query: 54 KN-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + KL I + + + P F S F ++ +D + Sbjct: 60 PQLTDFCTKLTSIQQQDVDEAPKFIEAISRFKEWICSFPNHIFCSWGNYDKKQFIQDCAF 119 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 N S I+ S+ + + H + D+H ++ +Y Sbjct: 120 HNFAYPFTSEHINIKEEFSEYLGVSKRFGMAQALNELGIELKGTHHRGIDDAHNIASIY 178 >gi|208806770|ref|ZP_03249107.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4206] gi|208726571|gb|EDZ76172.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4206] Length = 188 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|16125770|ref|NP_420334.1| exonuclease [Caulobacter crescentus CB15] gi|13422904|gb|AAK23502.1| exonuclease [Caulobacter crescentus CB15] Length = 202 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 61/205 (29%), Gaps = 7/205 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I D ET + IG + D + R ++ P G + + + HGI Sbjct: 1 MKVIAIDFET--ASEQRASPCSIGLAWIEDG-EVARVEHHYIRPPGNRFAAFNMAFHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + D + + A +AHNA FD+ I + + + Sbjct: 58 PEHVADADEWPDVLERIRPELEG--ALVLAHNASFDISVIRRTCEHYDVPAPGFDYLCTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS--HLLSDVYIKMMVGGSQINFG 184 + LN +C G+ +H L+ + + + Sbjct: 116 QVARSVWPELPSHKLNVVCGHLGVDFAHHDAAADAYACGRVALAATGLNALSDIRALPQR 175 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRD 209 R + + + +R Sbjct: 176 LGMTPGRLDPDSYRPSRIAAAPRRR 200 >gi|72160587|ref|YP_288244.1| DNA polymerase III subunit epsilon [Thermobifida fusca YX] gi|71914319|gb|AAZ54221.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX] Length = 250 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL--LDYSKTNRTFQVFLCPNGRKNSP 57 FDIETTG++ + DR++ +E +T RT+ + P Sbjct: 19 FDIETTGINLEQDRVVTAAIIETAADGSQRTRRTW--LVNPGVEIPPE 64 >gi|314983265|gb|EFT27357.1| conserved domain protein [Propionibacterium acnes HL110PA3] Length = 87 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 6/76 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETT LD RIIEI ++ + + P G EA +H I+ + Sbjct: 17 VILDTETTDLD---GRIIEISIIDAATGTVLMN---QLINPQGAPIYAEARTVHHISPDD 70 Query: 70 LKDKPSFSSIFSEFWD 85 L P+F+ ++ D Sbjct: 71 LATAPTFTQVWPRLED 86 >gi|302557603|ref|ZP_07309945.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] gi|302475221|gb|EFL38314.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] Length = 240 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 FD+ETTG D + RI+ +E+ R + P G +A+ +HGI Sbjct: 11 FDLETTGTDPREARIVTGAVIEVRAGEPLGRR-EWLADP-GVPIPEDAVAVHGI 62 >gi|157368671|ref|YP_001476660.1| oligoribonuclease [Serratia proteamaculans 568] gi|166918640|sp|A8G8U2|ORN_SERP5 RecName: Full=Oligoribonuclease gi|157320435|gb|ABV39532.1| Exonuclease RNase T and DNA polymerase III [Serratia proteamaculans 568] Length = 181 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MTGNENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|329940244|ref|ZP_08289526.1| DNA exonuclease [Streptomyces griseoaurantiacus M045] gi|329301070|gb|EGG44966.1| DNA exonuclease [Streptomyces griseoaurantiacus M045] Length = 251 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 FD+ETTG D RI+ +E+ D Q P Sbjct: 11 FDLETTGTDPYEARIVTGAVIEVRDGEPLG-HRQWLADPG 49 >gi|270264991|ref|ZP_06193254.1| oligoribonuclease [Serratia odorifera 4Rx13] gi|270040925|gb|EFA14026.1| oligoribonuclease [Serratia odorifera 4Rx13] Length = 181 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MTGNENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|168752095|ref|ZP_02777117.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4113] gi|168758576|ref|ZP_02783583.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4401] gi|168770825|ref|ZP_02795832.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4486] gi|168783143|ref|ZP_02808150.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4076] gi|168802378|ref|ZP_02827385.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC508] gi|195939745|ref|ZP_03085127.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4024] gi|208810405|ref|ZP_03252281.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4206] gi|208816703|ref|ZP_03257823.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4045] gi|208820052|ref|ZP_03260372.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4042] gi|209398184|ref|YP_002270926.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4115] gi|254793468|ref|YP_003078305.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14359] gi|188013988|gb|EDU52110.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4113] gi|188999500|gb|EDU68486.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4076] gi|189354630|gb|EDU73049.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4401] gi|189360293|gb|EDU78712.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4486] gi|189375616|gb|EDU94032.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC508] gi|208724921|gb|EDZ74628.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4206] gi|208731046|gb|EDZ79735.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4045] gi|208740175|gb|EDZ87857.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4042] gi|209159584|gb|ACI37017.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4115] gi|209767642|gb|ACI82133.1| exonuclease X [Escherichia coli] gi|209767646|gb|ACI82135.1| exonuclease X [Escherichia coli] gi|254592868|gb|ACT72229.1| DNA exonuclease X [Escherichia coli O157:H7 str. TW14359] gi|326343773|gb|EGD67535.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. 1125] Length = 220 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIV-NPMSHLVHPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|291529581|emb|CBK95167.1| DNA polymerase III, alpha subunit (gram-positive type) [Eubacterium rectale M104/1] Length = 345 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 6/130 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKNSPE 58 I+ K +V+D+ETTG SKN RI+ A+ +FL P Sbjct: 12 IKDKK--IVVYDLETTGFKSKNTRILSFSAIRYQVSEHGMDEIDRRNMFLNP-MMTIPAY 68 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 ++ IT+E + D P+ +E + N + +NA FD G +N +RI Sbjct: 69 ITAVNHITNEKVADCPTEYEAGAEILSYLNSADFVSGYNNANFDDGLVNEMARRIGFGKW 128 Query: 119 DPSRIIDTLS 128 P ID + Sbjct: 129 IPKNEIDVMI 138 >gi|33862659|ref|NP_894219.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9313] gi|33634575|emb|CAE20561.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9313] Length = 309 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 72/219 (32%), Gaps = 14/219 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ETTGLD K + +E+GA+ + FL P A + + Sbjct: 81 IIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLLP----VETNAAESINRIPAEV 136 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +++ + +AHNA FD + + ++ ++ Sbjct: 137 TRLDQPWRQGLDYFQALLDAADLLVAHNAGFDRQWFGKDQLPAVSK--PWLCTMEDIAWP 194 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------MMVGGSQINFG 184 + SR + L YG+ + H AL D L++V+ + +++ G + Sbjct: 195 VDRQLRSRPSVRDLALAYGVPVWAA--HRALTDCIYLAEVFARCKDLETLLLHGLEPRRL 252 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + + K R++ E + Sbjct: 253 MRAQVSYEQRHLAKDAGFRWNDPIQGAWTRRLSDREAAK 291 >gi|225012068|ref|ZP_03702505.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium MS024-2A] gi|225003623|gb|EEG41596.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium MS024-2A] Length = 1436 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 56/188 (29%), Gaps = 19/188 (10%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL K + R I+I + P+G + Sbjct: 2 YLIFDTETTGLPKKWNAPLSDAENWPRCIQIAWQIHDAKGDLVWHENYLIKPDGYTIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-------- 110 + K+HGI+ +++ + E + + HN FD + AE Sbjct: 62 SEKIHGISTALAEEQGIPLAEVLEKFHAALRTVDFVVGHNVSFDRNIMGAEYLRADLADV 121 Query: 111 -QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + + + S + H A D + Sbjct: 122 LEDKMVIDTCTEETAQLCQLTGGRGGKFKLPTLSELYHFLFQEGFEEAHNATADVEATTR 181 Query: 170 VYIKMMVG 177 +++++ Sbjct: 182 AFLELLRK 189 >gi|56413202|ref|YP_150277.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362128|ref|YP_002141765.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127459|gb|AAV76965.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093605|emb|CAR59069.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 232 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RLITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + + P + + Sbjct: 59 ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLP-------ELPGEWICTMKLSRRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRT 153 >gi|152996402|ref|YP_001341237.1| exodeoxyribonuclease I [Marinomonas sp. MWYL1] gi|150837326|gb|ABR71302.1| Exodeoxyribonuclease I [Marinomonas sp. MWYL1] Length = 484 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 17/162 (10%), Positives = 42/162 (25%), Gaps = 6/162 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC--PNGRKNSPEALKLHGITDE 68 FD ETTG D DR ++ + D++ + + L + Sbjct: 12 FDFETTGTDPARDRPMQFAGIRTDLDFNPIGEPIMFYCRLAEDVLPQPEACLLTGISPQD 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + ++ + +N + F + ++ + + Sbjct: 72 ANREGLCEAEFMQAVEAELSQPGTCALGYN---TIRFDDEVVRYGFYRNFIDPYTREWQN 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 R + + GI + L+ Sbjct: 129 NCSRWDMIDLVRMTYAMRPEGIVWPKNEDGQVSMKLEALTKA 170 >gi|313677443|ref|YP_004055439.1| DNA polymerase iii, alpha subunit [Marivirga tractuosa DSM 4126] gi|312944141|gb|ADR23331.1| DNA polymerase III, alpha subunit [Marivirga tractuosa DSM 4126] Length = 1433 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 21/224 (9%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSP 57 +++D ETTGL + R ++I + + + + P G Sbjct: 2 YLIYDTETTGLPKNYNAPLSDADNWPRCVQIAWQLHGANGELLDAQNH-IIKPEGFDIPY 60 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---- 113 A K+HGI+ E + + E + E+ + HN FD+ + AE+ R Sbjct: 61 NAEKVHGISTERAQKEGKPLIEVLEAFKTILEKTDVVVGHNISFDISIMGAEMLRKELSE 120 Query: 114 -----NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 D I + + + + H A D + Sbjct: 121 TVLTEKPIIDTKEAGTDFCKIPGGRGGKYKWPTLTELHKKLFGQDFADAHDAAYDVDATA 180 Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 + ++ + G E ++ K N + +++ Sbjct: 181 KCFFGLITEKAVKPLGETPIEAINYEPPKLDAANFATSSKNEEK 224 >gi|238756168|ref|ZP_04617488.1| Oligoribonuclease [Yersinia ruckeri ATCC 29473] gi|238705642|gb|EEP98039.1| Oligoribonuclease [Yersinia ruckeri ATCC 29473] Length = 181 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 11 IDLEMTGLDPERDRIIEIA 29 >gi|150007459|ref|YP_001302202.1| hypothetical protein BDI_0810 [Parabacteroides distasonis ATCC 8503] gi|298375435|ref|ZP_06985392.1| exonuclease [Bacteroides sp. 3_1_19] gi|301310540|ref|ZP_07216479.1| exonuclease [Bacteroides sp. 20_3] gi|149935883|gb|ABR42580.1| hypothetical protein BDI_0810 [Parabacteroides distasonis ATCC 8503] gi|298267935|gb|EFI09591.1| exonuclease [Bacteroides sp. 3_1_19] gi|300832114|gb|EFK62745.1| exonuclease [Bacteroides sp. 20_3] Length = 192 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 74/183 (40%), Gaps = 19/183 (10%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGI 65 M+ + FD+ETTG+ + + +I E++ T +F +CP+ + EAL++ + Sbjct: 1 MKLLFFDLETTGIKYWRNGVHQISG-EIVIDGVTKESFNFNVCPHPQCEIEEEALRICNV 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-----------------A 108 + E ++ P ++ +F + ++ ++ + F VG+ N Sbjct: 60 SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQNGDN 119 Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 ++ T + R++H + ++ + GI I H A D L Sbjct: 120 YFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLTK 179 Query: 169 DVY 171 ++Y Sbjct: 180 EIY 182 >gi|309797899|ref|ZP_07692280.1| exonuclease [Escherichia coli MS 145-7] gi|308118507|gb|EFO55769.1| exonuclease [Escherichia coli MS 145-7] Length = 182 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 67/164 (40%), Gaps = 4/164 (2%) Query: 12 FDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69 DIE+TGLD +IIEI V+ ++T +F + P R P+A +HGI+ E Sbjct: 6 VDIESTGLDFLSGHKIIEIAMVKYEIETQTMVDSFVMRFNP-RRSIDPKAQAVHGISLED 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L +P + S + + WIAHN + + L +IDTL Sbjct: 65 LAAEPLLADHASSVASY-LSSSDIWIAHNGEAFDIPFIRHELKSYGFSLPDIPLIDTLFS 123 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R L L G H H AL D++L+ + K Sbjct: 124 LWATEDGKRPRLEELAFSLGFIYDHAKAHSALYDTNLMMQCFFK 167 >gi|311111764|ref|YP_003982986.1| DNA polymerase III subunit epsilon [Rothia dentocariosa ATCC 17931] gi|310943258|gb|ADP39552.1| DNA polymerase III subunit epsilon [Rothia dentocariosa ATCC 17931] Length = 230 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 7/206 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG+D RI+ + L R + P G + A +HGIT E+ + Sbjct: 11 FDLETTGVDVTTARIVTASLLLLNPDGSVQRAGEWLANP-GIEIPEGAASVHGITTEYAR 69 Query: 72 DKPSFSSIFSEFWD----FFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIID 125 + IA NA +D ++ E+ R N L I+D Sbjct: 70 SHGQPAQQVIWEVAGAIGSLFLDGIPVIAFNAAYDFSVLHHEMLRYNIAHGELPAGHILD 129 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 I + P R + + + H + D+ + +K+ +I Sbjct: 130 PYVIHKHVIPRKRGNRKLETLTAEHDVVLENAHTSKADALAAERLLVKLAERFPEIATDA 189 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP 211 + + R KP Sbjct: 190 AALHTHQVQWSLDQARDFQDWLRTKP 215 >gi|255013952|ref|ZP_05286078.1| hypothetical protein B2_08587 [Bacteroides sp. 2_1_7] Length = 192 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 74/183 (40%), Gaps = 19/183 (10%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGI 65 M+ + FD+ETTG+ + + +I E++ T +F +CP+ + EAL++ + Sbjct: 1 MKLLFFDLETTGIKYWRNGVHQISG-EIVIDGVTKESFNFNVCPHSQCEIEEEALRICNV 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-----------------A 108 + E ++ P ++ +F + ++ ++ + F VG+ N Sbjct: 60 SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQNGDH 119 Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 ++ T + R++H + ++ + GI I H A D L Sbjct: 120 YFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLTK 179 Query: 169 DVY 171 ++Y Sbjct: 180 EIY 182 >gi|269955496|ref|YP_003325285.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas cellulosilytica DSM 15894] gi|269304177|gb|ACZ29727.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas cellulosilytica DSM 15894] Length = 247 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPN 51 FD ETTG+D NDRI+ V + T+ RT+ + P Sbjct: 21 FDTETTGVDVANDRIVTAAVVLRIPGVSTDVRTW--LVDPG 59 >gi|254520783|ref|ZP_05132839.1| exonuclease [Clostridium sp. 7_2_43FAA] gi|226914532|gb|EEH99733.1| exonuclease [Clostridium sp. 7_2_43FAA] Length = 252 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 74/239 (30%), Gaps = 28/239 (11%) Query: 7 MRKIVFDIE---------TTGLDSKNDR------------IIEIGAVELLDYSKTNRTFQ 45 M IV D+E TT D N+ II+IGAV++ + + F Sbjct: 1 MNYIVCDLEFNQKYIPSNTT--DKNNNESIDSTMKQLPFEIIQIGAVKINENLEITSNFN 58 Query: 46 VFLCP-NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 + P +P + I + L +FS+++ F +F + A Sbjct: 59 ELIRPIVYTDINPYVENITKINKDMLSSCETFSNVYKRFLNFLGDDEAVLCVWGKSDIKE 118 Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN--SLCKRYGITISHRSKHGALL 162 F+ L PS+ ID + + H A Sbjct: 119 FLRNIKFNNLSTSLFPSKYIDVQKHTSKLFHIQKGKQIGLKTAVEMLNIDFENKFHNAFY 178 Query: 163 DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 D+ V+ K + I + +R K + K + + K IT EE Sbjct: 179 DALYTYKVFKK--IYNPSIIPKIYNDNNRTHKTKVKIDTDALFKQFSKMYDKEITAEEK 235 >gi|297825941|ref|XP_002880853.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] gi|297326692|gb|EFH57112.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] Length = 223 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN 41 D+E TGL+ + DRI+EI + + D + T Sbjct: 50 IDLEMTGLNVEVDRILEIACI-ITDGNLTK 78 >gi|295677244|ref|YP_003605768.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. CCGE1002] gi|295437087|gb|ADG16257.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. CCGE1002] Length = 203 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 18/29 (62%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 ++ M + D+E TGL+ DRIIEI V Sbjct: 15 RSDMNLVWLDMEMTGLEPDTDRIIEIAVV 43 >gi|78065664|ref|YP_368433.1| oligoribonuclease [Burkholderia sp. 383] gi|123569006|sp|Q39IC7|ORN_BURS3 RecName: Full=Oligoribonuclease gi|77966409|gb|ABB07789.1| Exonuclease [Burkholderia sp. 383] Length = 206 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 15/29 (51%), Positives = 20/29 (68%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGLD NDRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43 >gi|258406595|ref|YP_003199337.1| Exonuclease RNase T and DNA polymerase III [Desulfohalobium retbaense DSM 5692] gi|257798822|gb|ACV69759.1| Exonuclease RNase T and DNA polymerase III [Desulfohalobium retbaense DSM 5692] Length = 233 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 8/114 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D E TGL + II IGAV + +R F +CP + + +H I+ + Sbjct: 38 VLDTELTGLR-RRHEIISIGAVRIEHLALKPLDR-FYTEVCP--KAWTKTGTLIHRISPQ 93 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 +D P + E + + I HN D+ F+ ++ PL Sbjct: 94 QCQDAPKIGKVLPELIAYLGT--SLLIGHNIALDLQFLQKACKKHLGHPLVHPC 145 >gi|222823839|ref|YP_002575413.1| exonuclease [Campylobacter lari RM2100] gi|222539061|gb|ACM64162.1| conserved hypothetical protein, putative exonuclease [Campylobacter lari RM2100] Length = 459 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 54/155 (34%), Gaps = 5/155 (3%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K+ IV D ETTGL D I+++ ++ Y F + P + EA K+HGI Sbjct: 148 KLNVIVIDTETTGLREWEDEILQLSIIDETGYLI----FDKYFKPKYKSTWIEAQKIHGI 203 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 F+++K S + + + I +N FD+ FI + + Sbjct: 204 KPAFVQNKASIDNYKIQL-EKIFNDADVIIGYNLDFDLKFIKRVIDFEKPMFCIDVMKLF 262 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 T D K+ H A Sbjct: 263 TSYYHEESSILPNVDCGYSYKKLTFAAWHFKNPNA 297 >gi|224120530|ref|XP_002330965.1| predicted protein [Populus trichocarpa] gi|222872757|gb|EEF09888.1| predicted protein [Populus trichocarpa] Length = 219 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN 41 KM + D+E TGL+++ DRI+EI + + D T Sbjct: 38 KMPLVWIDLEMTGLNTEVDRILEIACI-ITDGYLTK 72 >gi|124023602|ref|YP_001017909.1| DNA polymerase III subunit epsilon [Prochlorococcus marinus str. MIT 9303] gi|123963888|gb|ABM78644.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9303] Length = 321 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 72/219 (32%), Gaps = 14/219 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ETTGLD K + +E+GA+ + FL P A + + Sbjct: 93 IIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLLP----VETNAAESINRIPAEV 148 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +++ + +AHNA FD + + ++ ++ Sbjct: 149 TRLDQPWRQGLDYFQALLDAADLLVAHNAGFDRQWFGKDQLPAVSK--PWLCTMEDIAWP 206 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------MMVGGSQINFG 184 + SR + L YG+ + H AL D L++V+ + +++ G + Sbjct: 207 VDRQLRSRPSVRDLALAYGVPVWAA--HRALTDCIYLAEVFARCKDLETLLLHGLEPRRL 264 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + + K R++ E + Sbjct: 265 MRAQVSYAQRHLAKEAGFRWNDPIQGAWTRRLSDREAAK 303 >gi|283834783|ref|ZP_06354524.1| oligoribonuclease [Citrobacter youngae ATCC 29220] gi|291069029|gb|EFE07138.1| oligoribonuclease [Citrobacter youngae ATCC 29220] Length = 181 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|269796146|ref|YP_003315601.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease [Sanguibacter keddieii DSM 10542] gi|269098331|gb|ACZ22767.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Sanguibacter keddieii DSM 10542] Length = 241 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 FD ETTG+D DRI+ V + RT+ L P + Sbjct: 11 FDTETTGVDVSEDRIVSAALVRRHVGTTEVRTW--LLDPGVPIPPEASSIHG 60 >gi|331665829|ref|ZP_08366723.1| oligoribonuclease [Escherichia coli TA143] gi|331056880|gb|EGI28874.1| oligoribonuclease [Escherichia coli TA143] Length = 181 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|283786843|ref|YP_003366708.1| oligoribonuclease [Citrobacter rodentium ICC168] gi|282950297|emb|CBG89944.1| oligoribonuclease [Citrobacter rodentium ICC168] Length = 181 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|262341080|ref|YP_003283935.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272417|gb|ACY40325.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 1434 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 67/210 (31%), Gaps = 23/210 (10%) Query: 9 KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQ---VFLCPNGRKN 55 ++ D ETTGL + RI++ ++ + + P+ Sbjct: 2 YLIVDTETTGLPISYNFSITHTDNWPRIVQFSW---QNHDILGDLIEFKNFIIKPDHYDI 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----- 110 A K+HGIT+E + S + E++ I HN +FD I E Sbjct: 59 PFNAFKIHGITNEKAEKYGVDLSFVLCEFRKSLEKSQCLIGHNLEFDKKVIECEFLRKKI 118 Query: 111 --QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 K LD I + + S + + H A D + Sbjct: 119 EISFKKKKILDTKEISVSYCKLPGNRKKFKWPTLSELYQKLFEEKIPNLHDAANDVKATA 178 Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198 +++++ G + +D K + + Sbjct: 179 RCFLELLRIGIISHQDIGVEKDTILKFKNR 208 >gi|206579385|ref|YP_002240881.1| oligoribonuclease [Klebsiella pneumoniae 342] gi|288937537|ref|YP_003441596.1| exonuclease RNase T and DNA polymerase III [Klebsiella variicola At-22] gi|206568443|gb|ACI10219.1| oligoribonuclease [Klebsiella pneumoniae 342] gi|288892246|gb|ADC60564.1| Exonuclease RNase T and DNA polymerase III [Klebsiella variicola At-22] Length = 181 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|152973034|ref|YP_001338180.1| oligoribonuclease [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|166216264|sp|A6TH79|ORN_KLEP7 RecName: Full=Oligoribonuclease gi|150957883|gb|ABR79913.1| oligoribonuclease [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 181 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|221213533|ref|ZP_03586507.1| oligoribonuclease [Burkholderia multivorans CGD1] gi|221166322|gb|EED98794.1| oligoribonuclease [Burkholderia multivorans CGD1] Length = 211 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 15/29 (51%), Positives = 20/29 (68%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGLD NDRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43 >gi|295098321|emb|CBK87411.1| Oligoribonuclease (3'->5' exoribonuclease) [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 181 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 11 IDLEMTGLDPERDRIIEIA 29 >gi|116253032|ref|YP_768870.1| DNA polymerase/exonuclease [Rhizobium leguminosarum bv. viciae 3841] gi|115257680|emb|CAK08778.1| putative DNA polymerase/exonuclease [Rhizobium leguminosarum bv. viciae 3841] Length = 196 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 5/150 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I D ET + + +G + D T R + + P + S + +HGI Sbjct: 1 MKTIAIDFET--ANEQRGSACSVGLAWIEDGRVT-RVEERLIRPRDMRFSGMNIAIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++D P F + EF + F AHNA FD A L + + + + Sbjct: 58 PEHVEDAPEFPEVMDEFEEDFRGATMI--AHNAAFDFSVWRASLDLYRQSYPELTYLCSL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156 R + LN + + G+ H + Sbjct: 116 KMAQRIWPHFLSHRLNLIAEHLGLRFVHHN 145 >gi|168702958|ref|ZP_02735235.1| DNA polymerase I (PolI) [Gemmata obscuriglobus UQM 2246] Length = 203 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 5/32 (15%) Query: 10 IVFDIETTGLDSKNDRI--IEIGA---VELLD 36 + D ETTGLD DR+ I++ A V L+D Sbjct: 51 VAVDTETTGLDPARDRVRLIQVAAGQDVALID 82 >gi|328906095|gb|EGG25870.1| exonuclease [Propionibacterium sp. P08] Length = 207 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 13/175 (7%) Query: 9 KIVFDIET----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + D ET G+ + ++ V++ D +R + P +S E LHG Sbjct: 37 FVAVDFETANRMGGVSA-----CQLAMVKVHDGHIVDR-LNTLIRPPEGWDSFEFTYLHG 90 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + D P +++I F + A AHNA FD + L Sbjct: 91 ISAADVVDAPLWANIADGVSQFVDG--ATVYAHNAAFDSRVWRQLDEYFGTTTLPSPFFC 148 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + A+R P N + H A D+ + + ++ Sbjct: 149 -SYRTAQRLIPGLPNYKLPTVLNACAPTYRLNHHRADSDAEACALIVCQLQRLAD 202 >gi|313835961|gb|EFS73675.1| exonuclease [Propionibacterium acnes HL037PA2] gi|314927196|gb|EFS91027.1| exonuclease [Propionibacterium acnes HL044PA1] gi|314970727|gb|EFT14825.1| exonuclease [Propionibacterium acnes HL037PA3] Length = 184 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 13/175 (7%) Query: 9 KIVFDIET----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + D ET G+ + ++ V++ D +R + P +S E LHG Sbjct: 14 FVAVDFETANRMGGVSA-----CQLAMVKVHDGHIVDR-LNTLIRPPEGWDSFEFTYLHG 67 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + D P +++I F + A AHNA FD + L Sbjct: 68 ISAADVVDAPLWANIADGVSQFVDG--ATVYAHNAAFDSRVWRQLDEYFGTTTLPSPFFC 125 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + A+R P N + H A D+ + + ++ Sbjct: 126 -SYRTAQRLIPGLPNYKLPTVLNACAPTYRLNHHRADSDAEACALIVCQLQRLAD 179 >gi|258646762|ref|ZP_05734231.1| exonuclease [Dialister invisus DSM 15470] gi|260404188|gb|EEW97735.1| exonuclease [Dialister invisus DSM 15470] Length = 207 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 62/172 (36%), Gaps = 9/172 (5%) Query: 7 MRKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+ D ET G + +G + + D ++ + + P P ++++G Sbjct: 1 MKYAAIDFETAYWG--PGSA--CSLG-ISVSDGNEITEEWYRLIRPYRMNFDPICMRVNG 55 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I + ++ +P+F + + E + + AHNA+FD+G + + L + + Sbjct: 56 IYPDDVEKEPAFPAFWKEVAERLEG--SIVFAHNARFDMGVLASVLDVYDLPDIHFLYGD 113 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L+++ G +H ++ ++ Sbjct: 114 TVAVSRMLWKELPNHKLDTVAGSLGYDFNHHQALDDARACEMIVRKAVEKTE 165 >gi|159484124|ref|XP_001700110.1| predicted protein [Chlamydomonas reinhardtii] gi|158272606|gb|EDO98404.1| predicted protein [Chlamydomonas reinhardtii] Length = 398 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 58/194 (29%), Gaps = 29/194 (14%) Query: 11 VFDIETTGLD----------------SKND-------RIIEIGAVEL--LDYSKTNRTFQ 45 V D ETTG D RI+ I L + Sbjct: 203 VVDTETTGFPRRLPGTPMNGFIREQVPYTDLEGWSTARIVSIAWRVLAPDGRMELQEHGY 262 Query: 46 VFLCPNGRKNSPEALKLHGITDEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103 + P G +A+++HGI+ + + P + +AHN K+D+ Sbjct: 263 RIVRPVGFVIPADAVQIHGISTQRATQEGLPLDQVLDELMSAIQRWNCGVIVAHNLKYDL 322 Query: 104 GFI--NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 I + +D R+ + K R + + R H A Sbjct: 323 NVILSELYRRNRAQDVARLERMEGVCTANCSKFYLGRYHKQAELLKALTDEDMRVAHDAE 382 Query: 162 LDSHLLSDVYIKMM 175 D+ + Y+ ++ Sbjct: 383 CDAEACAKCYVALL 396 >gi|240168250|ref|ZP_04746909.1| hypothetical protein MkanA1_02987 [Mycobacterium kansasii ATCC 12478] Length = 680 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 20/180 (11%) Query: 9 KIVFDIETTGLDSKN-----------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 +V D+E + D I EIGAV++ + F + P R P Sbjct: 57 FVVVDLE-----TTGGRTTGTEAAPPDAITEIGAVKVRGGTVLAE-FATLVDPQ-RSIPP 109 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + ++L GIT ++D P S++ F++ N+ ++AHNA FD+GF+ A ++ + Sbjct: 110 QIVQLTGITTAMVRDAPVISAVLPMFFE--FAGNSVFVAHNAGFDIGFLRAAARQCDITW 167 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 P + R + +++ + H AL D+ DV ++ Sbjct: 168 PRPKVLCTVRLARRVLSREEAPSVRLAELARLFSVATQPTHRALDDARATVDVLHALIER 227 >gi|229551811|ref|ZP_04440536.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1] gi|258539212|ref|YP_003173711.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705] gi|229314755|gb|EEN80728.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1] gi|257150888|emb|CAR89860.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705] Length = 180 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 5/99 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + K + V + +F + P + P+ +++HGIT Sbjct: 1 MDFIAMDFET--ANRKRASACSLALVVVQQNRVV-DSFYTLINPQMQ-FDPQNIRIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + ++D+P+F F AHNA FDV Sbjct: 57 PDMVQDQPTF-DRVWPHIQMFYTPGRIVTAHNAPFDVSV 94 >gi|119962878|ref|YP_948455.1| DNA polymerase III subunit epsilon [Arthrobacter aurescens TC1] gi|119949737|gb|ABM08648.1| putative DNA polymerase III epsilon subunit [Arthrobacter aurescens TC1] Length = 236 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 70/215 (32%), Gaps = 5/215 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M N + + FD+ETTG +S++ RI+ + + + P G + EA Sbjct: 1 MSSWNTLSRAAFDLETTGKNSRSARIVTASITVVDAHGGLIAEHEWLADP-GVEIPLEAS 59 Query: 61 KLHGITDEFLKDKPSFSSIFSEFW----DFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 ++HG+T E + + ++ + + IA NA +D + AE R Sbjct: 60 EVHGVTTEKARAEGRPAAEVTREVAGVLQGLFDDGTPVIAFNASYDFTVLAAESARYGVP 119 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 L ++D + ++ + + + H + D+ V M Sbjct: 120 QLSRFPVLDPYVMNKQMDRYRKGKRTLTALCEEYGVDLTNAHTSAADALATLRVLDAMAG 179 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 ++ T + R Sbjct: 180 KFPKLQMPASTLHQLQVDWAASQAADFQQYLRRSK 214 >gi|38704238|ref|NP_313168.2| oligoribonuclease [Escherichia coli O157:H7 str. Sakai] gi|161367457|ref|NP_290795.2| oligoribonuclease [Escherichia coli O157:H7 EDL933] gi|168747976|ref|ZP_02772998.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4113] gi|168755351|ref|ZP_02780358.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4401] gi|168766441|ref|ZP_02791448.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4486] gi|168774540|ref|ZP_02799547.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4196] gi|168780594|ref|ZP_02805601.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4076] gi|168784799|ref|ZP_02809806.1| oligoribonuclease [Escherichia coli O157:H7 str. EC869] gi|168802329|ref|ZP_02827336.1| oligoribonuclease [Escherichia coli O157:H7 str. EC508] gi|195935954|ref|ZP_03081336.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4024] gi|208812669|ref|ZP_03253998.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4045] gi|208819030|ref|ZP_03259350.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4042] gi|209398620|ref|YP_002273707.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4115] gi|217325417|ref|ZP_03441501.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14588] gi|254796184|ref|YP_003081021.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14359] gi|261225285|ref|ZP_05939566.1| oligoribonuclease [Escherichia coli O157:H7 str. FRIK2000] gi|261255463|ref|ZP_05947996.1| oligoribonuclease [Escherichia coli O157:H7 str. FRIK966] gi|291285577|ref|YP_003502395.1| Oligoribonuclease [Escherichia coli O55:H7 str. CB9615] gi|20138827|sp|Q8XDP0|ORN_ECO57 RecName: Full=Oligoribonuclease gi|187769887|gb|EDU33731.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4196] gi|188017565|gb|EDU55687.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4113] gi|189001658|gb|EDU70644.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4076] gi|189357409|gb|EDU75828.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4401] gi|189363946|gb|EDU82365.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4486] gi|189374804|gb|EDU93220.1| oligoribonuclease [Escherichia coli O157:H7 str. EC869] gi|189375661|gb|EDU94077.1| oligoribonuclease [Escherichia coli O157:H7 str. EC508] gi|208733946|gb|EDZ82633.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4045] gi|208739153|gb|EDZ86835.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4042] gi|209160020|gb|ACI37453.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4115] gi|217321638|gb|EEC30062.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14588] gi|254595584|gb|ACT74945.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14359] gi|290765450|gb|ADD59411.1| Oligoribonuclease [Escherichia coli O55:H7 str. CB9615] gi|320190703|gb|EFW65353.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli O157:H7 str. EC1212] gi|320638923|gb|EFX08569.1| oligoribonuclease [Escherichia coli O157:H7 str. G5101] gi|320644292|gb|EFX13357.1| oligoribonuclease [Escherichia coli O157:H- str. 493-89] gi|320649610|gb|EFX18134.1| oligoribonuclease [Escherichia coli O157:H- str. H 2687] gi|320655006|gb|EFX22967.1| oligoribonuclease [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660513|gb|EFX27974.1| oligoribonuclease [Escherichia coli O55:H7 str. USDA 5905] gi|320665782|gb|EFX32819.1| oligoribonuclease [Escherichia coli O157:H7 str. LSU-61] gi|326341785|gb|EGD65568.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli O157:H7 str. 1125] gi|326346640|gb|EGD70374.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli O157:H7 str. 1044] Length = 181 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|163754237|ref|ZP_02161360.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] gi|161326451|gb|EDP97777.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] Length = 457 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 10/165 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTG ++++I EI + + + F + PN L GI + + Sbjct: 9 IIDVETTG---RSNKITEISIFKFDGETIVDE-FTSLVNPN-VLIPTHITALTGIDNAMV 63 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D P+F+ I E +++ ++AHN FD I E + I+ D LS A Sbjct: 64 ADAPTFAEIAKEVLS--ITKDSIFVAHNVNFDYNVIRNEFKAIDLDFRRKKLCTVRLSRA 121 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L LCK I +H A D+ ++ ++ Sbjct: 122 LIPG-FKSYSLGKLCKSLN--IHISDRHRARGDAAATVILFQLLL 163 >gi|56708263|ref|YP_170159.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis SCHU S4] gi|110670734|ref|YP_667291.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis FSC198] gi|224457383|ref|ZP_03665856.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis MA00-2987] gi|254370748|ref|ZP_04986753.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis FSC033] gi|254875083|ref|ZP_05247793.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis MA00-2987] gi|56604755|emb|CAG45833.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis SCHU S4] gi|110321067|emb|CAL09216.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis FSC198] gi|151568991|gb|EDN34645.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis FSC033] gi|254841082|gb|EET19518.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis MA00-2987] gi|282159490|gb|ADA78881.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis NE061598] Length = 482 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 1/132 (0%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71 D+ET+G+++ D++++ A+ + F F+ N P A H I+ Sbjct: 11 DLETSGINNSFDQVLQFAAIRIDLDFNEIERFNFFVKLNPDTTPSPMATITHHISIAQAN 70 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + + N I +N N P + + S A Sbjct: 71 TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKNGCSRAD 130 Query: 132 RKHPSSRNDLNS 143 + L Sbjct: 131 LFPIVTCYYLFC 142 >gi|258507958|ref|YP_003170709.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG] gi|257147885|emb|CAR86858.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG] gi|259649285|dbj|BAI41447.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG] Length = 180 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 5/99 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + K + V + +F + P + P+ +++HGIT Sbjct: 1 MDFIAMDFET--ANRKRASACSLALVVVQQNRVV-DSFYTLINPQMQ-FDPQNIRIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + ++D+P+F F AHNA FDV Sbjct: 57 PDMVQDQPTF-DRVWPHIQMFYTPGRIVTAHNAPFDVSV 94 >gi|149186517|ref|ZP_01864829.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21] gi|148829744|gb|EDL48183.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21] Length = 297 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 62/226 (27%), Gaps = 12/226 (5%) Query: 11 VFDIETTGLDSKNDRIIEIG---AVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHGI 65 + D ETTGL ++ D IIE+ + F +L G++ P+ + G+ Sbjct: 51 IVDTETTGLSAETDVIIELAIMLCFVGDNGEVIG-HFGPVSWLQDPGQELDPKITLVTGL 109 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + LK++ ++ D + A +A F + + Sbjct: 110 GAQHLKNQKINDTVARGLLDRADLIAAHNAKFDAGFIERRYPDLAGKAWACSCSEIDWLK 169 Query: 126 TLSIARRK-----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R + H +D + + +++ Sbjct: 170 LGYEGRSQSALLAHAGWFSDAHRAAADVWALFWLLQHRQRDPGGGPIRTHLARLIEAADT 229 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK 226 + F K+E + E EH++ Sbjct: 230 PTVMVQAERAPFAKKELLRARGYRWNPDGPFWQIELLP-EKVEHEQ 274 >gi|146307535|ref|YP_001188000.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina ymp] gi|145575736|gb|ABP85268.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina ymp] Length = 182 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 5/113 (4%) Query: 9 KIVFDIE-TT--GLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 +V D+E TT G + IIEIGA + FQ F+ P R + +L Sbjct: 4 WLVIDLEATTDEGGWPLEEMEIIEIGASLVGADGHERDHFQRFVKPQRRPCLTDFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + S ++++ + + + ++ D E + Sbjct: 64 HIAQADVDSAGSLPQVWAQLERWLEQHAPRLVGWSSWGDYDRRQLEQEWRQHQ 116 >gi|260599488|ref|YP_003212059.1| oligoribonuclease [Cronobacter turicensis z3032] gi|260218665|emb|CBA34001.1| Oligoribonuclease [Cronobacter turicensis z3032] Length = 181 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPRQDRIIEIA 29 >gi|262045407|ref|ZP_06018430.1| oligoribonuclease [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330003307|ref|ZP_08304578.1| oligoribonuclease [Klebsiella sp. MS 92-3] gi|259037236|gb|EEW38484.1| oligoribonuclease [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537018|gb|EGF63306.1| oligoribonuclease [Klebsiella sp. MS 92-3] Length = 181 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|199597302|ref|ZP_03210733.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus rhamnosus HN001] gi|199591818|gb|EDY99893.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus rhamnosus HN001] Length = 180 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 5/99 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + K + V + +F + P + P+ +++HGIT Sbjct: 1 MDFIAMDFET--ANRKRASACSLALVVVQQNRVV-DSFYTLINPQMQ-FDPQNIRIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + ++D+PSF F AHNA FDV Sbjct: 57 PDMVQDQPSF-DRVWPHIQMFYTPGRIVTAHNAPFDVSV 94 >gi|314937698|ref|ZP_07845022.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133a04] gi|314943353|ref|ZP_07850126.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133C] gi|314953543|ref|ZP_07856454.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133A] gi|314994073|ref|ZP_07859394.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133B] gi|314996850|ref|ZP_07861856.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133a01] gi|313589017|gb|EFR67862.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133a01] gi|313591508|gb|EFR70353.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133B] gi|313594422|gb|EFR73267.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133A] gi|313597934|gb|EFR76779.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133C] gi|313642944|gb|EFS07524.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133a04] Length = 194 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + + + V + + + F + P +++HGI Sbjct: 18 MNFVAMDFET--ANHQPYSACSLALVMVKNSQIVDE-FYTLIQPETPFF-WRNVQIHGIH 73 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +++ P F ++ +F + +AHNA FD + L + + + + Sbjct: 74 QEDVRNAPKFPEVWQTIQPYFQKNRLV-VAHNAAFDTKVLAGCLDYYHLEQPNYLSLCTV 132 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S R + LN++C+ I + H H AL DS +++ + Sbjct: 133 KSSRRLFPEFPNHRLNTVCENLNIQLDH--HHDALEDSRACAEILL 176 >gi|170766878|ref|ZP_02901331.1| oligoribonuclease [Escherichia albertii TW07627] gi|170124316|gb|EDS93247.1| oligoribonuclease [Escherichia albertii TW07627] gi|315617577|gb|EFU98183.1| exonuclease family protein [Escherichia coli 3431] Length = 181 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|161503006|ref|YP_001570118.1| exodeoxyribonuclease X [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864353|gb|ABX20976.1| hypothetical protein SARI_01068 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 231 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 66/173 (38%), Gaps = 20/173 (11%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + P I T+ ++ Sbjct: 59 ADKPWIEDVI-----PLYYGSQWYVAHNASFDRRVLPE----------LPGEWICTMKLS 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 RR P + +L K +++ + ++ + Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIIRTTGW 156 >gi|323975494|gb|EGB70595.1| exonuclease [Escherichia coli TW10509] Length = 181 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|169847019|ref|XP_001830222.1| oligoribonuclease [Coprinopsis cinerea okayama7#130] gi|116508698|gb|EAU91593.1| oligoribonuclease [Coprinopsis cinerea okayama7#130] Length = 216 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 4/60 (6%) Query: 10 IV-FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 IV D+E TGL+ + D+IIEI AV + + + Q + Sbjct: 15 IVWVDLEMTGLNPQKDKIIEI-AVLITNGNLELVDDGIQYIIRAEKSLLDGMDEWCTKQH 73 >gi|76810706|ref|YP_334337.1| oligoribonuclease [Burkholderia pseudomallei 1710b] gi|76580159|gb|ABA49634.1| oligoribonuclease [Burkholderia pseudomallei 1710b] Length = 229 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGLD DRIIEI V Sbjct: 43 RNELNLVWLDMEMTGLDPDTDRIIEIAVV 71 >gi|325280210|ref|YP_004252752.1| Exonuclease RNase T and DNA polymerase III [Odoribacter splanchnicus DSM 20712] gi|324312019|gb|ADY32572.1| Exonuclease RNase T and DNA polymerase III [Odoribacter splanchnicus DSM 20712] Length = 169 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 5/144 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ET + + + +G V +++ F + P S +HG++ Sbjct: 3 KFAAIDFET--ANWQQTSVCSVGIV-VMNRGVIEDRFYSLIHPAPNFYSRRNTAIHGLSR 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ +F +++ E +AHN+ FD G + A + D S Sbjct: 60 EDTEEALAFPTVWREIAPMIEG--IPLVAHNSMFDEGCLKAVFRLYEMDYPGYSFYCTYR 117 Query: 128 SIARRKHPSSRNDLNSLCKRYGIT 151 + L+++ G Sbjct: 118 LSRKLFKGLENYQLHTVSSFCGYD 141 >gi|284162617|ref|YP_003401240.1| hypothetical protein Arcpr_1521 [Archaeoglobus profundus DSM 5631] gi|284012614|gb|ADB58567.1| hypothetical protein Arcpr_1521 [Archaeoglobus profundus DSM 5631] Length = 233 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 6/41 (14%) Query: 7 MRK-----IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 MR I FDIETTGL S DRI+ IG + + + + Sbjct: 1 MRFVRFYPIFFDIETTGLKSLEDRIVAIG-IRVREEIFEDE 40 >gi|291327132|ref|ZP_06127108.2| oligoribonuclease [Providencia rettgeri DSM 1131] gi|291311676|gb|EFE52129.1| oligoribonuclease [Providencia rettgeri DSM 1131] Length = 187 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 15/30 (50%), Positives = 20/30 (66%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 +++KN+ I D+E TGLD DRIIEI Sbjct: 6 IMQKNENNLIWIDLEMTGLDPVRDRIIEIA 35 >gi|148546369|ref|YP_001266471.1| ribonuclease T [Pseudomonas putida F1] gi|166200017|sp|A5VZH7|RNT_PSEP1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|148510427|gb|ABQ77287.1| RNAse T [Pseudomonas putida F1] gi|313497451|gb|ADR58817.1| Ribonuclease T [Pseudomonas putida BIRD-1] Length = 224 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + + T+ + P G P AL+ G Sbjct: 32 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGANIEPAALEFTG 91 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HN+ FD+GF+NA + R + Sbjct: 92 IKLDHPLRMAVSEESAMTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARNDLK 151 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I R H A D+ ++++ ++ Sbjct: 152 RNPFHPFSSFDTATLAGLAYGQTVLARACQSADIDFDGREAHSARYDTEKTAELFCGIVN 211 Query: 177 GGSQIN 182 ++ Sbjct: 212 RWKEMG 217 >gi|16763172|ref|NP_458789.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16767599|ref|NP_463214.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29144651|ref|NP_807993.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56416144|ref|YP_153219.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182799|ref|YP_219216.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161505144|ref|YP_001572256.1| oligoribonuclease [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161617623|ref|YP_001591588.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553558|ref|ZP_02347307.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994766|ref|ZP_02575857.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231388|ref|ZP_02656446.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237081|ref|ZP_02662139.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244869|ref|ZP_02669801.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263295|ref|ZP_02685268.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467067|ref|ZP_02700915.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822519|ref|ZP_02834519.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446159|ref|YP_002043608.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451819|ref|YP_002048396.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472818|ref|ZP_03078802.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194733922|ref|YP_002117294.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248139|ref|YP_002149267.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263840|ref|ZP_03163914.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197365070|ref|YP_002144707.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244671|ref|YP_002218237.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389037|ref|ZP_03215649.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204927249|ref|ZP_03218451.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207859499|ref|YP_002246150.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213052288|ref|ZP_03345166.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419498|ref|ZP_03352564.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428680|ref|ZP_03361430.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213583916|ref|ZP_03365742.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650568|ref|ZP_03380621.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850085|ref|ZP_03380983.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238910511|ref|ZP_04654348.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289805592|ref|ZP_06536221.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289829989|ref|ZP_06547440.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54038786|sp|P65600|ORN_SALTI RecName: Full=Oligoribonuclease gi|54041583|sp|P65599|ORN_SALTY RecName: Full=Oligoribonuclease gi|59797989|sp|Q5PLG7|ORN_SALPA RecName: Full=Oligoribonuclease gi|81309509|sp|Q57GM7|ORN_SALCH RecName: Full=Oligoribonuclease gi|25338361|pir||AI1047 oligoribonuclease (EC 3.1.-.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16422913|gb|AAL23173.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16505480|emb|CAD06830.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi] gi|29140290|gb|AAO71853.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56130401|gb|AAV79907.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130432|gb|AAX68135.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160866491|gb|ABX23114.1| hypothetical protein SARI_03281 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161366987|gb|ABX70755.1| hypothetical protein SPAB_05483 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404822|gb|ACF65044.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194410123|gb|ACF70342.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194459182|gb|EDX48021.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709424|gb|ACF88645.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630566|gb|EDX49178.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197096547|emb|CAR62157.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211842|gb|ACH49239.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242095|gb|EDY24715.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289951|gb|EDY29310.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939187|gb|ACH76520.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199606135|gb|EDZ04680.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323914|gb|EDZ09109.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205322027|gb|EDZ09866.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327412|gb|EDZ14176.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334333|gb|EDZ21097.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336339|gb|EDZ23103.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341098|gb|EDZ27862.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347926|gb|EDZ34557.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206711302|emb|CAR35680.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261249445|emb|CBG27309.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996684|gb|ACY91569.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160842|emb|CBW20373.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915451|dbj|BAJ39425.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088780|emb|CBY98538.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223225|gb|EFX48295.1| 3'-to-5' oligoribonuclease (orn) [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615515|gb|EFY12435.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618575|gb|EFY15464.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622012|gb|EFY18862.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627084|gb|EFY23876.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631043|gb|EFY27807.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637738|gb|EFY34439.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642402|gb|EFY39006.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645663|gb|EFY42188.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650497|gb|EFY46905.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653449|gb|EFY49779.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659724|gb|EFY55967.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662065|gb|EFY58281.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666186|gb|EFY62364.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672606|gb|EFY68717.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676036|gb|EFY72107.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680520|gb|EFY76558.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684586|gb|EFY80590.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192901|gb|EFZ78127.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197223|gb|EFZ82363.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201660|gb|EFZ86724.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206174|gb|EFZ91136.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213183|gb|EFZ97985.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215556|gb|EGA00300.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219541|gb|EGA04026.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227844|gb|EGA11998.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229014|gb|EGA13143.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236374|gb|EGA20450.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237506|gb|EGA21567.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241828|gb|EGA25857.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248023|gb|EGA31960.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254646|gb|EGA38457.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258295|gb|EGA41972.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259572|gb|EGA43206.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265845|gb|EGA49341.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270289|gb|EGA53737.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332991164|gb|AEF10147.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 181 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 11 IDLEMTGLDPERDRIIEIA 29 >gi|26987821|ref|NP_743246.1| ribonuclease T [Pseudomonas putida KT2440] gi|37999414|sp|Q88NW8|RNT_PSEPK RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|24982520|gb|AAN66710.1|AE016299_6 ribonuclease T [Pseudomonas putida KT2440] Length = 203 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + + T+ + P G P AL+ G Sbjct: 11 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGANIEPAALEFTG 70 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HN+ FD+GF+NA + R + Sbjct: 71 IKLDHPLRMAVSEESAMTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARNDLK 130 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I R H A D+ ++++ ++ Sbjct: 131 RNPFHPFSSFDTATLAGLAYGQTVLARACQSADIDFDGREAHSARYDTEKTAELFCGIVN 190 Query: 177 GGSQIN 182 ++ Sbjct: 191 RWKEMG 196 >gi|270293052|ref|ZP_06199263.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Streptococcus sp. M143] gi|270279031|gb|EFA24877.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Streptococcus sp. M143] Length = 157 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 5/97 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIENGEII-NQYATDVNPH-EPLDSHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 L P FS + + ++ + ++AHN +FD Sbjct: 64 RRLAAAPEFSQVAGKIFELVKD--GIFVAHNVQFDAN 98 >gi|258512426|ref|YP_003185860.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479152|gb|ACV59471.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 218 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 4/174 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ET+G D+I+ + S+ + +F + + + P + Sbjct: 32 VLDLETSGFSPARDKILSVACATFSGWSSEPDESFYAIVRHDDVADVPSHIWELTGLTPE 91 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + W+AH+ + D+GF+ + + L P + + Sbjct: 92 AMRDGEPLEVALRRALELGA-GRVWVAHHVRHDLGFLQRATDALWRLRLRPLAMDTAVVA 150 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L+ C+ GI +H A D + + V+ K M ++ Sbjct: 151 QVLARAARPLTLDEACEWLGIP--VVGRHRADADVRMTAAVWRKEMELCGRLGL 202 >gi|322831149|ref|YP_004211176.1| Exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602] gi|321166350|gb|ADW72049.1| Exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602] Length = 184 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 11 IDLEMTGLDPERDRIIEIA 29 >gi|255020848|ref|ZP_05292904.1| Oligoribonuclease [Acidithiobacillus caldus ATCC 51756] gi|254969639|gb|EET27145.1| Oligoribonuclease [Acidithiobacillus caldus ATCC 51756] Length = 200 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLD 36 R + D+E TGL+ + D+I+EI ++ + Sbjct: 4 KTQRLVWIDLEMTGLNPERDQILEIASIVTDN 35 >gi|53720090|ref|YP_109076.1| oligoribonuclease [Burkholderia pseudomallei K96243] gi|126451823|ref|YP_001067153.1| oligoribonuclease [Burkholderia pseudomallei 1106a] gi|134277998|ref|ZP_01764713.1| oligoribonuclease [Burkholderia pseudomallei 305] gi|167816819|ref|ZP_02448499.1| oligoribonuclease [Burkholderia pseudomallei 91] gi|167846725|ref|ZP_02472233.1| oligoribonuclease [Burkholderia pseudomallei B7210] gi|217420377|ref|ZP_03451882.1| oligoribonuclease [Burkholderia pseudomallei 576] gi|237813261|ref|YP_002897712.1| oligoribonuclease [Burkholderia pseudomallei MSHR346] gi|242316244|ref|ZP_04815260.1| oligoribonuclease [Burkholderia pseudomallei 1106b] gi|59798009|sp|Q63S41|ORN_BURPS RecName: Full=Oligoribonuclease gi|166215755|sp|A3NXT2|ORN_BURP0 RecName: Full=Oligoribonuclease gi|52210504|emb|CAH36487.1| oligoribonuclease [Burkholderia pseudomallei K96243] gi|126225465|gb|ABN89005.1| oligoribonuclease [Burkholderia pseudomallei 1106a] gi|134251648|gb|EBA51727.1| oligoribonuclease [Burkholderia pseudomallei 305] gi|217395789|gb|EEC35806.1| oligoribonuclease [Burkholderia pseudomallei 576] gi|237503180|gb|ACQ95498.1| oligoribonuclease [Burkholderia pseudomallei MSHR346] gi|242139483|gb|EES25885.1| oligoribonuclease [Burkholderia pseudomallei 1106b] Length = 201 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGLD DRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLDPDTDRIIEIAVV 43 >gi|238026568|ref|YP_002910799.1| oligoribonuclease [Burkholderia glumae BGR1] gi|237875762|gb|ACR28095.1| Oligoribonuclease (3'-5' exoribonuclease) [Burkholderia glumae BGR1] Length = 202 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 20/29 (68%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGL+ +DRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLNPDSDRIIEIAVV 43 >gi|115375897|ref|ZP_01463146.1| DNA polymerase III PolC-type, putative [Stigmatella aurantiaca DW4/3-1] gi|310819816|ref|YP_003952174.1| exonuclease [Stigmatella aurantiaca DW4/3-1] gi|115367075|gb|EAU66061.1| DNA polymerase III PolC-type, putative [Stigmatella aurantiaca DW4/3-1] gi|309392888|gb|ADO70347.1| Exonuclease [Stigmatella aurantiaca DW4/3-1] Length = 219 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 3/67 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNG--RKNSPEALKLHGITD 67 D+ETTGLD+ ++E+ + + S ++ + P + + Sbjct: 33 FIDLETTGLDASRHEVLEVAILRVDARSLKVLAEYEARVQPTRLADAHPEALAVCGYSDE 92 Query: 68 EFLKDKP 74 E+ P Sbjct: 93 EWRDALP 99 >gi|167720628|ref|ZP_02403864.1| oligoribonuclease [Burkholderia pseudomallei DM98] gi|167903697|ref|ZP_02490902.1| oligoribonuclease [Burkholderia pseudomallei NCTC 13177] gi|254181122|ref|ZP_04887720.1| oligoribonuclease [Burkholderia pseudomallei 1655] gi|184211661|gb|EDU08704.1| oligoribonuclease [Burkholderia pseudomallei 1655] Length = 201 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGLD DRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLDPDTDRIIEIAVV 43 >gi|332525250|ref|ZP_08401423.1| oligoribonuclease [Rubrivivax benzoatilyticus JA2] gi|332108532|gb|EGJ09756.1| oligoribonuclease [Rubrivivax benzoatilyticus JA2] Length = 186 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL DRIIEI V Sbjct: 16 IDLEMTGLYPATDRIIEIAVV 36 >gi|294499074|ref|YP_003562774.1| exonuclease family protein [Bacillus megaterium QM B1551] gi|294349011|gb|ADE69340.1| exonuclease family protein [Bacillus megaterium QM B1551] Length = 197 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 3/160 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69 V D+ETTGL ++ IIE+ + S T + + Sbjct: 11 VLDVETTGLSAQTCDIIELAIAVVSYDSSTGEIIDIVEEYEEFNMPSTPIFPYITNLTGI 70 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++ + + + IAHNA FD F+ + + + + Sbjct: 71 TNEMVKNKTLDDKKVESLLTSVSAIIAHNASFDRSFLL--KRYPSLFNQKWHCSMRAVKW 128 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 P+ + +HR+ LL Sbjct: 129 KEYGFPNKKLTTLLDHHNIEREHAHRAMDDVKGTIDLLRQ 168 >gi|167552492|ref|ZP_02346245.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|197251607|ref|YP_002146145.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215310|gb|ACH52707.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205322894|gb|EDZ10733.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 232 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + + P + + Sbjct: 59 ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLP-------ELPGEWICTMKLSRRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMQT 153 >gi|89110885|ref|AP_004665.1| oligoribonuclease [Escherichia coli str. K-12 substr. W3110] gi|90111697|ref|NP_418586.4| oligoribonuclease [Escherichia coli str. K-12 substr. MG1655] gi|157155866|ref|YP_001465662.1| oligoribonuclease [Escherichia coli E24377A] gi|157163628|ref|YP_001460946.1| oligoribonuclease [Escherichia coli HS] gi|161486014|ref|NP_757097.2| oligoribonuclease [Escherichia coli CFT073] gi|161949984|ref|YP_405804.2| oligoribonuclease [Shigella dysenteriae Sd197] gi|161986383|ref|YP_313069.2| oligoribonuclease [Shigella sonnei Ss046] gi|170021825|ref|YP_001726779.1| oligoribonuclease [Escherichia coli ATCC 8739] gi|170083611|ref|YP_001732931.1| oligoribonuclease [Escherichia coli str. K-12 substr. DH10B] gi|170681955|ref|YP_001746560.1| oligoribonuclease [Escherichia coli SMS-3-5] gi|187730220|ref|YP_001882856.1| oligoribonuclease [Shigella boydii CDC 3083-94] gi|188495936|ref|ZP_03003206.1| oligoribonuclease [Escherichia coli 53638] gi|191165629|ref|ZP_03027469.1| oligoribonuclease [Escherichia coli B7A] gi|193065728|ref|ZP_03046792.1| oligoribonuclease [Escherichia coli E22] gi|194428928|ref|ZP_03061461.1| oligoribonuclease [Escherichia coli B171] gi|194437211|ref|ZP_03069309.1| oligoribonuclease [Escherichia coli 101-1] gi|215489509|ref|YP_002331940.1| oligoribonuclease [Escherichia coli O127:H6 str. E2348/69] gi|218556717|ref|YP_002389631.1| oligoribonuclease [Escherichia coli IAI1] gi|218561324|ref|YP_002394237.1| oligoribonuclease [Escherichia coli S88] gi|218692499|ref|YP_002400711.1| oligoribonuclease [Escherichia coli ED1a] gi|218697914|ref|YP_002405581.1| oligoribonuclease [Escherichia coli 55989] gi|218702862|ref|YP_002410491.1| oligoribonuclease [Escherichia coli IAI39] gi|218707776|ref|YP_002415295.1| oligoribonuclease [Escherichia coli UMN026] gi|229560203|ref|YP_672251.2| oligoribonuclease [Escherichia coli 536] gi|229775946|ref|YP_859834.2| oligoribonuclease [Escherichia coli APEC O1] gi|238903272|ref|YP_002929068.1| oligoribonuclease [Escherichia coli BW2952] gi|253775210|ref|YP_003038041.1| oligoribonuclease [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254164094|ref|YP_003047202.1| oligoribonuclease [Escherichia coli B str. REL606] gi|256019810|ref|ZP_05433675.1| oligoribonuclease [Shigella sp. D9] gi|256025100|ref|ZP_05438965.1| oligoribonuclease [Escherichia sp. 4_1_40B] gi|260846995|ref|YP_003224773.1| oligoribonuclease Orn [Escherichia coli O103:H2 str. 12009] gi|260858318|ref|YP_003232209.1| oligoribonuclease Orn [Escherichia coli O26:H11 str. 11368] gi|260870927|ref|YP_003237329.1| oligoribonuclease Orn [Escherichia coli O111:H- str. 11128] gi|293402792|ref|ZP_06646889.1| oligoribonuclease [Escherichia coli FVEC1412] gi|293407892|ref|ZP_06651732.1| oligoribonuclease [Escherichia coli B354] gi|293417668|ref|ZP_06660290.1| orn oligoribonuclease [Escherichia coli B185] gi|293476475|ref|ZP_06664883.1| orn [Escherichia coli B088] gi|297518431|ref|ZP_06936817.1| oligoribonuclease [Escherichia coli OP50] gi|298378322|ref|ZP_06988206.1| oligoribonuclease [Escherichia coli FVEC1302] gi|301027985|ref|ZP_07191269.1| exonuclease [Escherichia coli MS 196-1] gi|306815620|ref|ZP_07449769.1| oligoribonuclease [Escherichia coli NC101] gi|307140859|ref|ZP_07500215.1| oligoribonuclease [Escherichia coli H736] gi|307312001|ref|ZP_07591638.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W] gi|309787669|ref|ZP_07682280.1| exonuclease family protein [Shigella dysenteriae 1617] gi|312965838|ref|ZP_07780064.1| exonuclease family protein [Escherichia coli 2362-75] gi|312974028|ref|ZP_07788199.1| exonuclease family protein [Escherichia coli 1827-70] gi|331644912|ref|ZP_08346029.1| oligoribonuclease [Escherichia coli H736] gi|331650290|ref|ZP_08351362.1| oligoribonuclease [Escherichia coli M605] gi|331655993|ref|ZP_08356981.1| oligoribonuclease [Escherichia coli M718] gi|331660740|ref|ZP_08361672.1| oligoribonuclease [Escherichia coli TA206] gi|331671070|ref|ZP_08371903.1| oligoribonuclease [Escherichia coli TA271] gi|331671316|ref|ZP_08372114.1| oligoribonuclease [Escherichia coli TA280] gi|331680295|ref|ZP_08380954.1| oligoribonuclease [Escherichia coli H591] gi|331681184|ref|ZP_08381821.1| oligoribonuclease [Escherichia coli H299] gi|67469688|sp|P0A784|ORN_ECOLI RecName: Full=Oligoribonuclease gi|67469689|sp|P0A785|ORN_ECOL6 RecName: Full=Oligoribonuclease gi|166918637|sp|A7ZV33|ORN_ECO24 RecName: Full=Oligoribonuclease gi|166918638|sp|A8A7Q9|ORN_ECOHS RecName: Full=Oligoribonuclease gi|85676916|dbj|BAE78166.1| oligoribonuclease [Escherichia coli str. K12 substr. W3110] gi|87082382|gb|AAC77122.2| oligoribonuclease [Escherichia coli str. K-12 substr. MG1655] gi|157069308|gb|ABV08563.1| oligoribonuclease [Escherichia coli HS] gi|157077896|gb|ABV17604.1| oligoribonuclease [Escherichia coli E24377A] gi|169756753|gb|ACA79452.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli ATCC 8739] gi|169891446|gb|ACB05153.1| oligoribonuclease [Escherichia coli str. K-12 substr. DH10B] gi|170519673|gb|ACB17851.1| oligoribonuclease [Escherichia coli SMS-3-5] gi|187427212|gb|ACD06486.1| oligoribonuclease [Shigella boydii CDC 3083-94] gi|188491135|gb|EDU66238.1| oligoribonuclease [Escherichia coli 53638] gi|190904324|gb|EDV64033.1| oligoribonuclease [Escherichia coli B7A] gi|192926597|gb|EDV81227.1| oligoribonuclease [Escherichia coli E22] gi|194412981|gb|EDX29270.1| oligoribonuclease [Escherichia coli B171] gi|194423767|gb|EDX39756.1| oligoribonuclease [Escherichia coli 101-1] gi|215267581|emb|CAS12036.1| oligoribonuclease [Escherichia coli O127:H6 str. E2348/69] gi|218354646|emb|CAV01632.1| oligoribonuclease [Escherichia coli 55989] gi|218363486|emb|CAR01140.1| oligoribonuclease [Escherichia coli IAI1] gi|218368093|emb|CAR05900.1| oligoribonuclease [Escherichia coli S88] gi|218372848|emb|CAR20727.1| oligoribonuclease [Escherichia coli IAI39] gi|218430063|emb|CAR10906.1| oligoribonuclease [Escherichia coli ED1a] gi|218434873|emb|CAR15811.1| oligoribonuclease [Escherichia coli UMN026] gi|222035935|emb|CAP78680.1| Oligoribonuclease [Escherichia coli LF82] gi|238861937|gb|ACR63935.1| oligoribonuclease [Escherichia coli BW2952] gi|242379688|emb|CAQ34511.1| oligoribonuclease monomer, subunit of oligoribonuclease [Escherichia coli BL21(DE3)] gi|253326254|gb|ACT30856.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975995|gb|ACT41666.1| oligoribonuclease [Escherichia coli B str. REL606] gi|253980151|gb|ACT45821.1| oligoribonuclease [Escherichia coli BL21(DE3)] gi|257756967|dbj|BAI28469.1| oligoribonuclease Orn [Escherichia coli O26:H11 str. 11368] gi|257762142|dbj|BAI33639.1| oligoribonuclease Orn [Escherichia coli O103:H2 str. 12009] gi|257767283|dbj|BAI38778.1| oligoribonuclease Orn [Escherichia coli O111:H- str. 11128] gi|260451008|gb|ACX41430.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli DH1] gi|284924347|emb|CBG37463.1| oligoribonuclease [Escherichia coli 042] gi|291320928|gb|EFE60370.1| orn [Escherichia coli B088] gi|291429707|gb|EFF02721.1| oligoribonuclease [Escherichia coli FVEC1412] gi|291430386|gb|EFF03384.1| orn oligoribonuclease [Escherichia coli B185] gi|291472143|gb|EFF14625.1| oligoribonuclease [Escherichia coli B354] gi|294490725|gb|ADE89481.1| oligoribonuclease [Escherichia coli IHE3034] gi|298280656|gb|EFI22157.1| oligoribonuclease [Escherichia coli FVEC1302] gi|299878895|gb|EFI87106.1| exonuclease [Escherichia coli MS 196-1] gi|305851282|gb|EFM51737.1| oligoribonuclease [Escherichia coli NC101] gi|306907808|gb|EFN38309.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W] gi|307556332|gb|ADN49107.1| oligoribonuclease [Escherichia coli ABU 83972] gi|307629236|gb|ADN73540.1| oligoribonuclease [Escherichia coli UM146] gi|308924419|gb|EFP69915.1| exonuclease family protein [Shigella dysenteriae 1617] gi|309704670|emb|CBJ04020.1| oligoribonuclease [Escherichia coli ETEC H10407] gi|310331562|gb|EFP98818.1| exonuclease family protein [Escherichia coli 1827-70] gi|312289081|gb|EFR16975.1| exonuclease family protein [Escherichia coli 2362-75] gi|312948814|gb|ADR29641.1| oligoribonuclease [Escherichia coli O83:H1 str. NRG 857C] gi|315063479|gb|ADT77806.1| oligoribonuclease [Escherichia coli W] gi|315138719|dbj|BAJ45878.1| oligoribonuclease [Escherichia coli DH1] gi|320173681|gb|EFW48871.1| 3'-to-5' oligoribonuclease (orn) [Shigella dysenteriae CDC 74-1112] gi|320193545|gb|EFW68182.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli WV_060327] gi|323156018|gb|EFZ42180.1| exonuclease family protein [Escherichia coli EPECa14] gi|323166646|gb|EFZ52404.1| exonuclease family protein [Shigella sonnei 53G] gi|323171596|gb|EFZ57242.1| exonuclease family protein [Escherichia coli LT-68] gi|323176077|gb|EFZ61669.1| exonuclease family protein [Escherichia coli 1180] gi|323182271|gb|EFZ67681.1| exonuclease family protein [Escherichia coli 1357] gi|323189956|gb|EFZ75234.1| exonuclease family protein [Escherichia coli RN587/1] gi|323380442|gb|ADX52710.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli KO11] gi|323935480|gb|EGB31818.1| exonuclease [Escherichia coli E1520] gi|323940084|gb|EGB36278.1| exonuclease [Escherichia coli E482] gi|323946101|gb|EGB42137.1| exonuclease [Escherichia coli H120] gi|323950766|gb|EGB46644.1| exonuclease [Escherichia coli H252] gi|323955595|gb|EGB51358.1| exonuclease [Escherichia coli H263] gi|323960351|gb|EGB55990.1| exonuclease [Escherichia coli H489] gi|323965551|gb|EGB61005.1| exonuclease [Escherichia coli M863] gi|323970580|gb|EGB65839.1| exonuclease [Escherichia coli TA007] gi|324118730|gb|EGC12622.1| exonuclease [Escherichia coli E1167] gi|327250105|gb|EGE61824.1| exonuclease family protein [Escherichia coli STEC_7v] gi|330908507|gb|EGH37026.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli AA86] gi|331035887|gb|EGI08125.1| oligoribonuclease [Escherichia coli H736] gi|331040684|gb|EGI12842.1| oligoribonuclease [Escherichia coli M605] gi|331046347|gb|EGI18437.1| oligoribonuclease [Escherichia coli M718] gi|331051782|gb|EGI23821.1| oligoribonuclease [Escherichia coli TA206] gi|331061659|gb|EGI33585.1| oligoribonuclease [Escherichia coli TA271] gi|331071161|gb|EGI42518.1| oligoribonuclease [Escherichia coli TA280] gi|331071758|gb|EGI43094.1| oligoribonuclease [Escherichia coli H591] gi|331081405|gb|EGI52566.1| oligoribonuclease [Escherichia coli H299] gi|332346241|gb|AEE59575.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 181 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|161525395|ref|YP_001580407.1| oligoribonuclease [Burkholderia multivorans ATCC 17616] gi|189349868|ref|YP_001945496.1| oligoribonuclease [Burkholderia multivorans ATCC 17616] gi|221201292|ref|ZP_03574332.1| oligoribonuclease [Burkholderia multivorans CGD2M] gi|221206254|ref|ZP_03579267.1| oligoribonuclease [Burkholderia multivorans CGD2] gi|160342824|gb|ABX15910.1| Exonuclease RNase T and DNA polymerase III [Burkholderia multivorans ATCC 17616] gi|189333890|dbj|BAG42960.1| oligoribonuclease [Burkholderia multivorans ATCC 17616] gi|221173563|gb|EEE05997.1| oligoribonuclease [Burkholderia multivorans CGD2] gi|221179142|gb|EEE11549.1| oligoribonuclease [Burkholderia multivorans CGD2M] Length = 211 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 15/29 (51%), Positives = 20/29 (68%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGLD NDRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLDPDNDRIIEIAVV 43 >gi|302059908|ref|ZP_07251449.1| ribonuclease T [Pseudomonas syringae pv. tomato K40] Length = 225 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP------NGRKNSPEA 59 +V D+ET G +S D ++EI AV + + T+ + P Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFTG 92 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116 +KL + ++ + + IF + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI R H A D+ ++++ ++ Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKPAELFCGIVN 212 Query: 177 GGSQIN 182 ++ Sbjct: 213 RWKEMG 218 >gi|295704398|ref|YP_003597473.1| exonuclease family protein [Bacillus megaterium DSM 319] gi|294802057|gb|ADF39123.1| exonuclease family protein [Bacillus megaterium DSM 319] Length = 197 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 3/160 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69 V D+ETTGL ++ IIE+ + S T + + Sbjct: 11 VLDVETTGLSAQTCDIIELAIAVVSYDSSTGEIIDIVEEYEEFNMPSTPIFPYITNLTGI 70 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++ + + + IAHNA FD F+ + + + + Sbjct: 71 TNEMVKNKTLDDKKVESLLTSVSAIIAHNASFDRSFLL--KRYPSLSNQKWHCSMRAVKW 128 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 P+ + +HR+ LL Sbjct: 129 KEYGFPNKKLTTLLDHHNIEREHAHRAMDDVKGTIDLLRQ 168 >gi|205355112|ref|YP_002228913.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274893|emb|CAR39959.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 181 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 11 IDLEMTGLDPERDRIIEIA 29 >gi|319935781|ref|ZP_08010210.1| hypothetical protein HMPREF9488_01041 [Coprobacillus sp. 29_1] gi|319809216|gb|EFW05665.1| hypothetical protein HMPREF9488_01041 [Coprobacillus sp. 29_1] Length = 301 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 69/214 (32%), Gaps = 9/214 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R VFDIE L+ + IG VELLD + T+ + P K+H I Sbjct: 4 RITVFDIE--VLNQDPASVCAIGIVELLDQQVIS-TYYSLVKPRNLSYDVYRYKVHKIKT 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L + F ++ + +F G + + ++ + + + Sbjct: 61 KSLLKERPFQDVWKDIHHYFENTIVVS-----HDIQGDMMNLRAVLKQNHISYPHLYMSC 115 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS-QINFGFK 186 + ++ + + H AL D+ + + I+M+ + Sbjct: 116 TNVLAHLVYPDLHKYNVKELSQMIGFEFQAHHALDDAKACAQILIEMLKYEHCETLQELH 175 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 F E K+ + P +++ E Sbjct: 176 QRFHLDFGEMKENYYRNIISAEIAPQLRELSQRE 209 >gi|300715033|ref|YP_003739836.1| Oligoribonuclease [Erwinia billingiae Eb661] gi|299060869|emb|CAX57976.1| Oligoribonuclease [Erwinia billingiae Eb661] Length = 181 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 11 IDLEMTGLDPEQDRIIEIA 29 >gi|297155821|gb|ADI05533.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis BCW-1] Length = 241 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ V + + P G A +HG+TD L Sbjct: 11 AFDTETTGIDVEQDRIVSAALVVQRGAGSLPEVRRWLVSP-GIPVPEAASAIHGLTDSHL 69 Query: 71 KDKPSFSSI 79 + + + Sbjct: 70 QRHGRWPAP 78 >gi|167837413|ref|ZP_02464296.1| oligoribonuclease [Burkholderia thailandensis MSMB43] Length = 201 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 18/29 (62%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGL DRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLSPDTDRIIEIAVV 43 >gi|237785374|ref|YP_002906079.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM 44385] gi|237758286|gb|ACR17536.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM 44385] Length = 555 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 7/174 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS--PEALKLHGIT 66 I FD+ET + N I + G V + + + P P +HGIT Sbjct: 223 FIAFDVET--ANEANGSICQFGVVVYHEGKE-AESHTWLCQPPSAWPDFTPATTAIHGIT 279 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + ++PS + ++N +AHNAKFD+ + + D + Sbjct: 280 PDKVANEPSCHDRLEQLAALLRKENLPIVAHNAKFDMVALRDAARAEKVDIPHITFACTY 339 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L L ++ + G H H AL D+ ++ + + + Sbjct: 340 LLARALHPELPNYKLTTVAQSAGSEAFH--HHDALADARACGEIMLSLCGISPR 391 >gi|209921653|ref|YP_002295737.1| oligoribonuclease [Escherichia coli SE11] gi|209914912|dbj|BAG79986.1| oligoribonuclease [Escherichia coli SE11] gi|320200705|gb|EFW75291.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli EC4100B] Length = 181 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|161485837|ref|NP_710030.3| oligoribonuclease [Shigella flexneri 2a str. 301] gi|161486369|ref|NP_839708.2| oligoribonuclease [Shigella flexneri 2a str. 2457T] gi|229774924|ref|YP_691603.2| oligoribonuclease [Shigella flexneri 5 str. 8401] gi|41017443|sp|Q83IJ9|ORN_SHIFL RecName: Full=Oligoribonuclease gi|313646361|gb|EFS10823.1| exonuclease family protein [Shigella flexneri 2a str. 2457T] gi|332749041|gb|EGJ79464.1| exonuclease family protein [Shigella flexneri K-671] gi|332749309|gb|EGJ79730.1| exonuclease family protein [Shigella flexneri 4343-70] gi|332761883|gb|EGJ92157.1| exonuclease family protein [Shigella flexneri 2747-71] gi|332763212|gb|EGJ93455.1| oligoribonuclease monomer [Shigella flexneri 2930-71] gi|333009212|gb|EGK28668.1| exonuclease family protein [Shigella flexneri K-218] gi|333010312|gb|EGK29745.1| exonuclease family protein [Shigella flexneri VA-6] gi|333011977|gb|EGK31362.1| exonuclease family protein [Shigella flexneri K-304] Length = 181 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|53724753|ref|YP_102207.1| oligoribonuclease [Burkholderia mallei ATCC 23344] gi|67642879|ref|ZP_00441630.1| oligoribonuclease [Burkholderia mallei GB8 horse 4] gi|121598453|ref|YP_993837.1| oligoribonuclease [Burkholderia mallei SAVP1] gi|124385187|ref|YP_001026898.1| oligoribonuclease [Burkholderia mallei NCTC 10229] gi|126441737|ref|YP_001059867.1| oligoribonuclease [Burkholderia pseudomallei 668] gi|126450125|ref|YP_001079814.1| oligoribonuclease [Burkholderia mallei NCTC 10247] gi|166999773|ref|ZP_02265607.1| oligoribonuclease [Burkholderia mallei PRL-20] gi|167739617|ref|ZP_02412391.1| oligoribonuclease [Burkholderia pseudomallei 14] gi|167825224|ref|ZP_02456695.1| oligoribonuclease [Burkholderia pseudomallei 9] gi|167895311|ref|ZP_02482713.1| oligoribonuclease [Burkholderia pseudomallei 7894] gi|167911947|ref|ZP_02499038.1| oligoribonuclease [Burkholderia pseudomallei 112] gi|167919939|ref|ZP_02507030.1| oligoribonuclease [Burkholderia pseudomallei BCC215] gi|226197920|ref|ZP_03793494.1| oligoribonuclease [Burkholderia pseudomallei Pakistan 9] gi|254176983|ref|ZP_04883640.1| oligoribonuclease [Burkholderia mallei ATCC 10399] gi|254208872|ref|ZP_04915220.1| oligoribonuclease [Burkholderia mallei JHU] gi|254259729|ref|ZP_04950783.1| oligoribonuclease [Burkholderia pseudomallei 1710a] gi|254295656|ref|ZP_04963114.1| oligoribonuclease [Burkholderia pseudomallei 406e] gi|59798006|sp|Q62M61|ORN_BURMA RecName: Full=Oligoribonuclease gi|166215752|sp|A3MHS8|ORN_BURM7 RecName: Full=Oligoribonuclease gi|166215753|sp|A2S4M9|ORN_BURM9 RecName: Full=Oligoribonuclease gi|166215754|sp|A1V6I4|ORN_BURMS RecName: Full=Oligoribonuclease gi|166215756|sp|A3NBZ6|ORN_BURP6 RecName: Full=Oligoribonuclease gi|52428176|gb|AAU48769.1| oligoribonuclease [Burkholderia mallei ATCC 23344] gi|121227263|gb|ABM49781.1| oligoribonuclease [Burkholderia mallei SAVP1] gi|124293207|gb|ABN02476.1| oligoribonuclease [Burkholderia mallei NCTC 10229] gi|126221230|gb|ABN84736.1| oligoribonuclease [Burkholderia pseudomallei 668] gi|126242995|gb|ABO06088.1| oligoribonuclease [Burkholderia mallei NCTC 10247] gi|147750748|gb|EDK57817.1| oligoribonuclease [Burkholderia mallei JHU] gi|157805488|gb|EDO82658.1| oligoribonuclease [Burkholderia pseudomallei 406e] gi|160698024|gb|EDP87994.1| oligoribonuclease [Burkholderia mallei ATCC 10399] gi|225930108|gb|EEH26121.1| oligoribonuclease [Burkholderia pseudomallei Pakistan 9] gi|238524093|gb|EEP87528.1| oligoribonuclease [Burkholderia mallei GB8 horse 4] gi|243064261|gb|EES46447.1| oligoribonuclease [Burkholderia mallei PRL-20] gi|254218418|gb|EET07802.1| oligoribonuclease [Burkholderia pseudomallei 1710a] Length = 201 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGLD DRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLDPDTDRIIEIAVV 43 >gi|69245046|ref|ZP_00603204.1| Exonuclease [Enterococcus faecium DO] gi|314947594|ref|ZP_07851004.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0082] gi|68196047|gb|EAN10479.1| Exonuclease [Enterococcus faecium DO] gi|313645987|gb|EFS10567.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0082] Length = 201 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + + + V + + + F + P +++HGI Sbjct: 25 MNFVAMDFET--ANHQPYSACSLALVMVKNSQIVDE-FYTLIQPETPFF-WRNVQIHGIH 80 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +++ P F ++ +F + +AHNA FD + L + + + + Sbjct: 81 QEDVRNAPKFPEVWQTIQPYFQKNRLV-VAHNAAFDTKVLAGCLDYYHLEQPNYLSLCTV 139 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S R + LN++C+ I + H H AL DS +++ + Sbjct: 140 KSSRRLFPEFPNHRLNTVCENLNIQLDH--HHDALEDSRACAEILL 183 >gi|124025389|ref|YP_001014505.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. NATL1A] gi|123960457|gb|ABM75240.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. NATL1A] Length = 292 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 76/172 (44%), Gaps = 8/172 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++ D ETTGLD++ND +E+G++ S++ Q FL P N+ + Sbjct: 67 NILILDTETTGLDNENDDCLEVGSILFNVKSRSVLAQQSFLLPVEINNAEK----INNIP 122 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P S ++++ + +AHNA+FD + L+++ + +D + Sbjct: 123 AEITRLPQPLSEAIKYFESLVRVSNVIVAHNAEFDKKWFG--LKKLPQIEKPWICSMDDI 180 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + + +R + L YG+ + + H AL D L++V+I+ Sbjct: 181 TWPADRQLKTRPSVRDLALAYGVPVW--NAHRALTDCIYLAEVFIRCTELEK 230 >gi|51596199|ref|YP_070390.1| Orf81 bacteriophage 186 [Yersinia pseudotuberculosis IP 32953] gi|51589481|emb|CAH21103.1| similar to Orf81 bacteriophage 186 [Yersinia pseudotuberculosis IP 32953] Length = 217 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 6/141 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++ D ETTGL + IIEI ++ + P + E +HGIT+ Sbjct: 44 NYLILDTETTGLG-NDAEIIEISIIDCTGKIL----LDTLVKP-LKAIPAEVTAIHGITN 97 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + D P++ I +F N++ + F A + + Sbjct: 98 EMVADAPTWRDIHYQFMTLTNDRTLLIYNALFDSRLIFQTAAANNCPVPEKKYIFDAECV 157 Query: 128 SIARRKHPSSRNDLNSLCKRY 148 + K+ + + K Sbjct: 158 MESYAKYYGQWDQKRNKFKWQ 178 >gi|256839708|ref|ZP_05545217.1| exonuclease [Parabacteroides sp. D13] gi|256738638|gb|EEU51963.1| exonuclease [Parabacteroides sp. D13] Length = 192 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 73/183 (39%), Gaps = 19/183 (10%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGI 65 M+ + FD+ETTG+ + + +I E++ T +F +CP+ + EAL++ + Sbjct: 1 MKLLFFDLETTGIKYWRNGVHQISG-EIVIDGVTKESFNFNVCPHPQCEIEEEALRICNV 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-----------------A 108 + E ++ P ++ +F + ++ ++ + F VG+ N Sbjct: 60 SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQNGDN 119 Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 ++ T + R++H + ++ + GI I H A D L Sbjct: 120 YFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLTK 179 Query: 169 DVY 171 +Y Sbjct: 180 KIY 182 >gi|254195663|ref|ZP_04902090.1| oligoribonuclease [Burkholderia pseudomallei S13] gi|169652409|gb|EDS85102.1| oligoribonuclease [Burkholderia pseudomallei S13] Length = 203 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGLD DRIIEI V Sbjct: 17 RNELNLVWLDMEMTGLDPDTDRIIEIAVV 45 >gi|161984789|ref|YP_410541.2| oligoribonuclease [Shigella boydii Sb227] gi|320183731|gb|EFW58568.1| 3'-to-5' oligoribonuclease (orn) [Shigella flexneri CDC 796-83] gi|320187043|gb|EFW61754.1| 3'-to-5' oligoribonuclease (orn) [Shigella flexneri CDC 796-83] gi|332087020|gb|EGI92154.1| exonuclease family protein [Shigella boydii 3594-74] Length = 181 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|297690291|ref|XP_002822553.1| PREDICTED: oligoribonuclease, mitochondrial-like isoform 2 [Pongo abelii] Length = 222 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 9/149 (6%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSP 57 M M R + D+E TGLD + D+IIE+ + T+ + PN P Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL------ITDSDLNILAEGPNLIIKQP 86 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + L F F +A N+ + + Sbjct: 87 DELLDSMSDWCKEHHGKQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKH 146 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCK 146 L I + + + K Sbjct: 147 LHYRIIDVSTVKELCRRWYPEEYEFAPKK 175 >gi|296118714|ref|ZP_06837290.1| oligoribonuclease [Corynebacterium ammoniagenes DSM 20306] gi|295968203|gb|EFG81452.1| oligoribonuclease [Corynebacterium ammoniagenes DSM 20306] Length = 222 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD K I+EI A+ Sbjct: 22 RLVWIDLEMTGLDPKRHTIVEIAAI 46 >gi|241895341|ref|ZP_04782637.1| hypothetical protein HMPREF0877_0611 [Weissella paramesenteroides ATCC 33313] gi|241871315|gb|EER75066.1| hypothetical protein HMPREF0877_0611 [Weissella paramesenteroides ATCC 33313] Length = 183 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 M+ N +VFD+E G +++IIEIGA+++ + F V + Sbjct: 1 MLFTNLKNYVVFDLEMNG----SNQIIEIGAIKVTGSQNIEK-FSVIVN 44 >gi|156932395|ref|YP_001436311.1| oligoribonuclease [Cronobacter sakazakii ATCC BAA-894] gi|156530649|gb|ABU75475.1| hypothetical protein ESA_00171 [Cronobacter sakazakii ATCC BAA-894] Length = 185 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 5 MSANENNLIWIDLEMTGLDPRQDRIIEIA 33 >gi|146310013|ref|YP_001175087.1| oligoribonuclease [Enterobacter sp. 638] gi|166918639|sp|A4W5Q6|ORN_ENT38 RecName: Full=Oligoribonuclease gi|145316889|gb|ABP59036.1| Exonuclease, RNase T and DNA polymerase III [Enterobacter sp. 638] Length = 181 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 11 IDLEMTGLDPERDRIIEIA 29 >gi|311281283|ref|YP_003943514.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae SCF1] gi|308750478|gb|ADO50230.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae SCF1] Length = 181 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 11 IDLEMTGLDPERDRIIEIA 29 >gi|213161996|ref|ZP_03347706.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 104 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP 50 +V D+ET G ++K D ++EI A+ L + + T + P Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEP 64 >gi|90420422|ref|ZP_01228329.1| polymerase III, epsilon subunit and related 3'-5' exonucleases [Aurantimonas manganoxydans SI85-9A1] gi|90335150|gb|EAS48903.1| polymerase III, epsilon subunit and related 3'-5' exonucleases [Aurantimonas manganoxydans SI85-9A1] Length = 260 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ET G ++D +IEIG++++ Q P G +P A ++H I+D Sbjct: 18 VIDVETAGHRLEDDAVIEIGSIDVDLATGVIGNPLQTLCDPAGVAINPHARRVHQISDAM 77 Query: 70 LKDKPSF 76 L P F Sbjct: 78 LDGAPPF 84 >gi|333011146|gb|EGK30560.1| exonuclease family protein [Shigella flexneri K-272] gi|333012659|gb|EGK32039.1| exonuclease family protein [Shigella flexneri K-227] Length = 181 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|254191977|ref|ZP_04898477.1| oligoribonuclease [Burkholderia pseudomallei Pasteur 52237] gi|254203892|ref|ZP_04910252.1| oligoribonuclease [Burkholderia mallei FMH] gi|254360071|ref|ZP_04976341.1| oligoribonuclease [Burkholderia mallei 2002721280] gi|147745404|gb|EDK52484.1| oligoribonuclease [Burkholderia mallei FMH] gi|148029311|gb|EDK87216.1| oligoribonuclease [Burkholderia mallei 2002721280] gi|157987799|gb|EDO95564.1| oligoribonuclease [Burkholderia pseudomallei Pasteur 52237] Length = 203 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGLD DRIIEI V Sbjct: 17 RNELNLVWLDMEMTGLDPDTDRIIEIAVV 45 >gi|329914413|ref|ZP_08276114.1| Oligoribonuclease [Oxalobacteraceae bacterium IMCC9480] gi|327545130|gb|EGF30416.1| Oligoribonuclease [Oxalobacteraceae bacterium IMCC9480] Length = 201 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/31 (45%), Positives = 20/31 (64%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +R N+ + D+E TGLD + DRIIE+ V Sbjct: 21 LRTNEFNLVWLDMEMTGLDPETDRIIEVAVV 51 >gi|307327637|ref|ZP_07606822.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] gi|306886749|gb|EFN17750.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] Length = 254 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%) Query: 7 MRK-----IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 MR FD+ETTG+D ++DRI+ V L + + L P Sbjct: 1 MRWPSGPMAAFDLETTGIDIESDRIVTAALVFLEPDGRVSDERTWMLDPG 50 >gi|304311523|ref|YP_003811121.1| Oligoribonuclease [gamma proteobacterium HdN1] gi|301797256|emb|CBL45476.1| Oligoribonuclease [gamma proteobacterium HdN1] Length = 184 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 15/31 (48%), Positives = 17/31 (54%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 + K I D+E TGLD DRIIEI V Sbjct: 1 MTDRKTNLIWIDLEMTGLDPDQDRIIEIATV 31 >gi|300741873|ref|ZP_07071894.1| putative DNA polymerase III epsilon subunit [Rothia dentocariosa M567] gi|300381058|gb|EFJ77620.1| putative DNA polymerase III epsilon subunit [Rothia dentocariosa M567] Length = 230 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 67/206 (32%), Gaps = 7/206 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG+D RI+ + L R + P G + A +HGIT E+ + Sbjct: 11 FDLETTGVDVTTARIVTASLLLLNPDGSVQRAGEWLANP-GIEIPEGAASVHGITTEYAR 69 Query: 72 DKPSFSSIFSEFWD----FFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIID 125 + IA NA +D ++ E+ R N L I+D Sbjct: 70 SHGQPAQQVIWEVAGAIGSLFLDGIPVIAFNAAYDFSVLHHEMLRYNIAHGELPAGHILD 129 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 I + P R + + + H + D+ + +K+ ++ Sbjct: 130 PYVIHKHVIPRKRGNRKLETLTAEHGVVLENAHTSKADALAAERLLVKLAERFPEVATDA 189 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP 211 + + R KP Sbjct: 190 AALHTHQVQWSLDQARDFQDWLRTKP 215 >gi|224586194|ref|YP_002639993.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224470722|gb|ACN48552.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322717301|gb|EFZ08872.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132691|gb|ADX20121.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326626042|gb|EGE32387.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630269|gb|EGE36612.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 185 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 15 IDLEMTGLDPERDRIIEIA 33 >gi|290512276|ref|ZP_06551643.1| oligoribonuclease [Klebsiella sp. 1_1_55] gi|289775271|gb|EFD83272.1| oligoribonuclease [Klebsiella sp. 1_1_55] Length = 199 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 19 MSANENNLIWIDLEMTGLDPERDRIIEIA 47 >gi|238892647|ref|YP_002917381.1| oligoribonuclease [Klebsiella pneumoniae NTUH-K2044] gi|238544963|dbj|BAH61314.1| oligoribonuclease [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 199 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 19 MSANENNLIWIDLEMTGLDPERDRIIEIA 47 >gi|237729098|ref|ZP_04559579.1| oligoribonuclease [Citrobacter sp. 30_2] gi|226908827|gb|EEH94745.1| oligoribonuclease [Citrobacter sp. 30_2] Length = 185 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 5 MSANENNLIWIDLEMTGLDPERDRIIEIA 33 >gi|261342826|ref|ZP_05970684.1| oligoribonuclease [Enterobacter cancerogenus ATCC 35316] gi|288314868|gb|EFC53806.1| oligoribonuclease [Enterobacter cancerogenus ATCC 35316] Length = 181 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 11 IDLEMTGLDPERDRIIEIA 29 >gi|296100932|ref|YP_003611078.1| oligoribonuclease [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055391|gb|ADF60129.1| oligoribonuclease [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 181 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 11 IDLEMTGLDPERDRIIEIA 29 >gi|268679559|ref|YP_003303990.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum deleyianum DSM 6946] gi|268617590|gb|ACZ11955.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum deleyianum DSM 6946] Length = 246 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 + I+FD ETTG +++ DRII+IGA+ + + F Sbjct: 3 KYILFDTETTG-NNEEDRIIQIGAMIVDAKGQV-EVFDELC 41 >gi|237653249|ref|YP_002889563.1| exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T] gi|237624496|gb|ACR01186.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T] Length = 213 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCP 50 R +V + E TGLD + DR++ +GA+ + + L P Sbjct: 44 RYVVLNTEATGLDLERDRLLAVGAIAVDGGLLHPQDAYHAQLEP 87 >gi|158428766|pdb|2IGI|A Chain A, Crystal Structure Of E. Coli Oligoribonuclease gi|158428767|pdb|2IGI|B Chain B, Crystal Structure Of E. Coli Oligoribonuclease Length = 180 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 10 IDLEMTGLDPERDRIIEIA 28 >gi|124516571|gb|EAY58079.1| DNA polymerase III, epsilon subunit [Leptospirillum rubarum] Length = 265 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 9/172 (5%) Query: 7 MRKIVFDIETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+ D+ETTGL DS+ RIIE+G + +T + K++G Sbjct: 1 MKVTFLDVETTGLLRDSR-ARIIELGFSSWENGKLLRKT-STLIK-GADIVPDNISKING 57 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT E LKD P F ++ + +AHN FDVG +N EL ++ PL I Sbjct: 58 ITTEMLKDAPRFEEVWKSIKGDIQG--SLLVAHNLAFDVGMVNRELILADRIPLGNMGID 115 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + S L + K GI + + H A+ D L + ++ Sbjct: 116 TLPLSRKMLPELSSYRLGEIAKHMGIL--NENPHRAMGDLETLEKIVSNLLG 165 >gi|78484942|ref|YP_390867.1| ribonuclease T [Thiomicrospira crunogena XCL-2] gi|78363228|gb|ABB41193.1| RNAse T [Thiomicrospira crunogena XCL-2] Length = 207 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 16/26 (61%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL 35 +V D+ET G D + + +IEI V L Sbjct: 17 VVVDVETAGFDPQTNALIEIAIVTLK 42 >gi|261345223|ref|ZP_05972867.1| oligoribonuclease [Providencia rustigianii DSM 4541] gi|282566919|gb|EFB72454.1| oligoribonuclease [Providencia rustigianii DSM 4541] Length = 180 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 15/29 (51%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 ++KN+ I D+E TGLD DRIIEI Sbjct: 1 MQKNENNLIWIDLEMTGLDPVRDRIIEIA 29 >gi|164663451|ref|XP_001732847.1| hypothetical protein MGL_0622 [Malassezia globosa CBS 7966] gi|159106750|gb|EDP45633.1| hypothetical protein MGL_0622 [Malassezia globosa CBS 7966] Length = 186 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 18/77 (23%), Gaps = 1/77 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D E TGLD NDR++EI + + + Sbjct: 23 IDCEMTGLDPNNDRLLEIACIVTDGQLRPVDEGVSYVIRTQPHVLQDMDEWCTTTHTNTG 82 Query: 71 KDKPSFSSIFSEFWDFF 87 + S Sbjct: 83 LIDACLDAKMSHMHQDV 99 >gi|68500002|gb|AAY97945.1| hypothetical protein [Plasmid pMCBF1] gi|133711762|gb|ABO36582.1| hypothetical protein [uncultured bacterium pMCBF6] Length = 291 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 7/94 (7%) Query: 4 KNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 K M++ +V D ETTGLD ++IEI V+ + N+ + P S +A ++ Sbjct: 114 KQAMKEGVVLDTETTGLD-GVAQVIEIAIVDWNGKTLINQR----IRPTVA-ISVDAQRV 167 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96 HGI+ + L D P+++ I E + Sbjct: 168 HGISMDDLADCPAWTDIAPEVRRVLEGRPVVIYN 201 >gi|330815929|ref|YP_004359634.1| oligoribonuclease [Burkholderia gladioli BSR3] gi|327368322|gb|AEA59678.1| oligoribonuclease [Burkholderia gladioli BSR3] Length = 202 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 20/29 (68%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGL+ +DRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLNPDSDRIIEIAVV 43 >gi|191173402|ref|ZP_03034931.1| oligoribonuclease [Escherichia coli F11] gi|190906378|gb|EDV65988.1| oligoribonuclease [Escherichia coli F11] Length = 181 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|167563592|ref|ZP_02356508.1| oligoribonuclease [Burkholderia oklahomensis EO147] gi|167570756|ref|ZP_02363630.1| oligoribonuclease [Burkholderia oklahomensis C6786] Length = 201 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 20/29 (68%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +N++ + D+E TGL+ +DRIIEI V Sbjct: 15 RNELNLVWLDMEMTGLNPDSDRIIEIAVV 43 >gi|157374891|ref|YP_001473491.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis HAW-EB3] gi|157317265|gb|ABV36363.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis HAW-EB3] Length = 228 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 16/29 (55%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK 39 D+E TGLD +D+I+ IG + + Sbjct: 45 AVDLEMTGLDPNSDQILSIGLIPIEKGLL 73 >gi|110835071|ref|YP_693930.1| oligoribonuclease [Alcanivorax borkumensis SK2] gi|123050323|sp|Q0VME0|ORN_ALCBS RecName: Full=Oligoribonuclease gi|110648182|emb|CAL17658.1| oligoribonuclease [Alcanivorax borkumensis SK2] Length = 181 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 17/29 (58%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + + I D+E TGL +NDRIIEI Sbjct: 1 MTDKRNNLIWIDLEMTGLSPENDRIIEIA 29 >gi|126174849|ref|YP_001050998.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica OS155] gi|160875861|ref|YP_001555177.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica OS195] gi|125998054|gb|ABN62129.1| Exonuclease, RNase T and DNA polymerase III [Shewanella baltica OS155] gi|160861383|gb|ABX49917.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS195] gi|315268052|gb|ADT94905.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS678] Length = 228 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 10/27 (37%), Positives = 16/27 (59%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSK 39 D+E TGL+ + D+I+ IG V + Sbjct: 46 DLEMTGLNPQQDQILSIGLVPIERGEI 72 >gi|325499700|gb|EGC97559.1| hypothetical protein ECD227_3797 [Escherichia fergusonii ECD227] Length = 185 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 5 MSANENNLIWIDLEMTGLDPERDRIIEIA 33 >gi|256022685|ref|ZP_05436550.1| ribonuclease T [Escherichia sp. 4_1_40B] Length = 83 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP 50 +V D+ET G ++K D ++EI A+ L + + T + P Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEP 64 >gi|311745732|ref|ZP_07719517.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1] gi|126575175|gb|EAZ79525.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1] Length = 1428 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 69/216 (31%), Gaps = 17/216 (7%) Query: 9 KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL +D R++++ + + P G Sbjct: 2 YLIFDTETTGLPRDYNAPMSDVDNWPRLVQLAWQLHDEKGNLISNHNYIIRPEGFTIPYN 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A K+HGI+ + + ++ ++ + HN +FD+ + +E R Sbjct: 62 AEKVHGISTKRALKEGHDLKQILGIFEGDVKKTKYLVGHNVEFDINVVGSEYLRAEATMP 121 Query: 119 DPSRIIDTLSIARRKHPS-------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + +DT I+ + + + H A D + + Sbjct: 122 LTADQLDTKDISTEFCAIPGGRGGKFKWPTLTELHQKLFGKGFGDAHDAAYDVDATARCF 181 Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207 ++ G Q + ++ K N + K Sbjct: 182 FGLITQGVQAPEEGIAISEVIYEAPKLDEANFAQAK 217 >gi|50122884|ref|YP_052051.1| oligoribonuclease [Pectobacterium atrosepticum SCRI1043] gi|59798024|sp|Q6D037|ORN_ERWCT RecName: Full=Oligoribonuclease gi|49613410|emb|CAG76861.1| oligoribonuclease [Pectobacterium atrosepticum SCRI1043] Length = 180 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M+ +N I D+E TGL+ +DRIIEI Sbjct: 1 MVDEN--NLIWIDLEMTGLNPDHDRIIEIA 28 >gi|297269235|ref|XP_002799845.1| PREDICTED: oligoribonuclease, mitochondrial-like isoform 2 [Macaca mulatta] Length = 222 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 9/149 (6%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSP 57 M M R + D+E TGLD + D+IIE+ + T+ + PN P Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL------ITDSDLNILAEGPNLIIKQP 86 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + L F F +A N+ + + Sbjct: 87 DELLDSMSDWCKEHHGKQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKH 146 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCK 146 L I + + + K Sbjct: 147 LHYRIIDVSTVKELCRRWYPEEYEFAPKK 175 >gi|218551434|ref|YP_002385226.1| oligoribonuclease [Escherichia fergusonii ATCC 35469] gi|218358976|emb|CAQ91636.1| oligoribonuclease [Escherichia fergusonii ATCC 35469] gi|324112239|gb|EGC06217.1| exonuclease [Escherichia fergusonii B253] Length = 181 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPERDRIIEIA 29 >gi|92113107|ref|YP_573035.1| DNA polymerase III subunit epsilon [Chromohalobacter salexigens DSM 3043] gi|91796197|gb|ABE58336.1| Exonuclease [Chromohalobacter salexigens DSM 3043] Length = 241 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 2/134 (1%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ETTGLD + I+ IG V + + P R S ++ H IT ++ Sbjct: 55 DMETTGLDEQRHAIVSIGLVPFDLRRIRMAQRRYWIVRPP-RPLSERSITFHHITHTEIE 113 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 P I E + + + + +R + + Sbjct: 114 QAPDLDEILDELLEAMAGHVMVVHYRHIERTFLNAAVKARRGEGIHFPVIDTMSLEARLH 173 Query: 132 RKHPSSRNDLNSLC 145 R+ +R Sbjct: 174 RQPLWARFRRWMGR 187 >gi|115931779|ref|XP_001175832.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 268 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 56/180 (31%), Gaps = 15/180 (8%) Query: 9 KIVFDIETTGLDSKN---DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D E T LD++ +IE +++ + +T TF ++ P +L G Sbjct: 79 FLVLDFEATCLDNERIEPQEVIEFPVLKVSGKTFETEATFHQYVEPQVHGVGEFCTRLTG 138 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 IT + +K +P+F+ F + + D + L Sbjct: 139 ITPDMVKGQPTFADTLKLFHVWMEKEGLVDPEVKFIFVTCGDWDLKTMFPSQCAHFELPY 198 Query: 121 SRIIDTLSIARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++ +P + + H +++L + +K Sbjct: 199 HSYFRRWLNIKKAFATVTSHYPKGMMQMLERLNIPHVGRHHSGIDDCRNIANILQALALK 258 >gi|256831880|ref|YP_003160607.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans DSM 20603] gi|256685411|gb|ACV08304.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans DSM 20603] Length = 238 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 5/97 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD ETTG+D+ +DR++ V T T+ + P A T+ ++ Sbjct: 11 FDTETTGVDTAHDRVVTAALVLRTGEVTTVDTW--LIDPGVPIPDEAARIHGITTEYAVE 68 Query: 72 DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGF 105 + S D + +A NA FDV Sbjct: 69 HGANPVDALSVIADRIVDHMSQGWALVAFNATFDVCI 105 >gi|320539682|ref|ZP_08039346.1| putative oligoribonuclease [Serratia symbiotica str. Tucson] gi|320030294|gb|EFW12309.1| putative oligoribonuclease [Serratia symbiotica str. Tucson] Length = 181 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 11 IDLEMTGLDPERDRIIEIA 29 >gi|225175900|ref|ZP_03729892.1| Exonuclease RNase T and DNA polymerase III [Dethiobacter alkaliphilus AHT 1] gi|225168488|gb|EEG77290.1| Exonuclease RNase T and DNA polymerase III [Dethiobacter alkaliphilus AHT 1] Length = 198 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 14/32 (43%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 D+ETTGL + + I+E+ + Sbjct: 14 FVDVETTGLSPRKEEIVELAICLFAYRRDSGE 45 >gi|148546859|ref|YP_001266961.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas putida F1] gi|148510917|gb|ABQ77777.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas putida F1] Length = 183 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 5/112 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 +V D+E TT G IIEIGA + + FQ F+ P R +P +L Sbjct: 4 WLVIDLEATTDDGGWPVTEMEIIEIGASLVTREGREVDHFQRFVKPRRRPQLTPFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I+ + + F +++ F + + A + D + Sbjct: 64 HISQADVDNAAPFREVWASFERWLGHHRGQLQAWVSWGDYDRQQLHQEWQQH 115 >gi|257879256|ref|ZP_05658909.1| exonuclease [Enterococcus faecium 1,230,933] gi|257881926|ref|ZP_05661579.1| exonuclease [Enterococcus faecium 1,231,502] gi|257886420|ref|ZP_05666073.1| exonuclease [Enterococcus faecium 1,231,501] gi|257892035|ref|ZP_05671688.1| exonuclease [Enterococcus faecium 1,231,410] gi|257894890|ref|ZP_05674543.1| exonuclease [Enterococcus faecium 1,231,408] gi|258617178|ref|ZP_05714948.1| exonuclease [Enterococcus faecium DO] gi|260558702|ref|ZP_05830891.1| exonuclease [Enterococcus faecium C68] gi|261208809|ref|ZP_05923246.1| exonuclease [Enterococcus faecium TC 6] gi|289567393|ref|ZP_06447761.1| exonuclease [Enterococcus faecium D344SRF] gi|293554053|ref|ZP_06674651.1| exonuclease [Enterococcus faecium E1039] gi|293559453|ref|ZP_06675990.1| exonuclease [Enterococcus faecium E1162] gi|293567360|ref|ZP_06678710.1| exonuclease [Enterococcus faecium E1071] gi|293571424|ref|ZP_06682452.1| exonuclease [Enterococcus faecium E980] gi|294616820|ref|ZP_06696561.1| exonuclease [Enterococcus faecium E1636] gi|294620071|ref|ZP_06699426.1| exonuclease [Enterococcus faecium E1679] gi|294622945|ref|ZP_06701839.1| exonuclease [Enterococcus faecium U0317] gi|257813484|gb|EEV42242.1| exonuclease [Enterococcus faecium 1,230,933] gi|257817584|gb|EEV44912.1| exonuclease [Enterococcus faecium 1,231,502] gi|257822276|gb|EEV49406.1| exonuclease [Enterococcus faecium 1,231,501] gi|257828395|gb|EEV55021.1| exonuclease [Enterococcus faecium 1,231,410] gi|257831269|gb|EEV57876.1| exonuclease [Enterococcus faecium 1,231,408] gi|260075161|gb|EEW63474.1| exonuclease [Enterococcus faecium C68] gi|260077311|gb|EEW65031.1| exonuclease [Enterococcus faecium TC 6] gi|289160818|gb|EFD08750.1| exonuclease [Enterococcus faecium D344SRF] gi|291589962|gb|EFF21760.1| exonuclease [Enterococcus faecium E1071] gi|291590326|gb|EFF22094.1| exonuclease [Enterococcus faecium E1636] gi|291593687|gb|EFF25206.1| exonuclease [Enterococcus faecium E1679] gi|291597644|gb|EFF28801.1| exonuclease [Enterococcus faecium U0317] gi|291601744|gb|EFF31998.1| exonuclease [Enterococcus faecium E1039] gi|291606515|gb|EFF35912.1| exonuclease [Enterococcus faecium E1162] gi|291608496|gb|EFF37790.1| exonuclease [Enterococcus faecium E980] Length = 177 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + + + V + + + F + P +++HGI Sbjct: 1 MNFVAMDFET--ANHQPYSACSLALVMVKNSQIVDE-FYTLIQPETPFF-WRNVQIHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +++ P F ++ +F + +AHNA FD + L + + + + Sbjct: 57 QEDVRNAPKFPEVWQTIQPYFQKNRLV-VAHNAAFDTKVLAGCLDYYHLEQPNYLSLCTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S R + LN++C+ I + H H AL DS +++ + Sbjct: 116 KSSRRLFPEFPNHRLNTVCENLNIQLDH--HHDALEDSRACAEILL 159 >gi|114640399|ref|XP_001150488.1| PREDICTED: similar to CGI-114 protein isoform 1 [Pan troglodytes] Length = 222 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 9/149 (6%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSP 57 M M R + D+E TGLD + D+IIE+ + T+ + PN P Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL------ITDSDLNILAEGPNLIIKQP 86 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + L F F +A N+ + + Sbjct: 87 DELLDSMSDWCKEHHGKQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKH 146 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCK 146 L I + + + K Sbjct: 147 LHYRIIDVSTVKELCRRWYPEEYEFAPKK 175 >gi|57530089|ref|NP_001006450.1| 3'-5' exoribonuclease 1 [Gallus gallus] gi|53130526|emb|CAG31592.1| hypothetical protein RCJMB04_8i1 [Gallus gallus] Length = 327 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 V D E T G + IIE V L ++ + TFQ ++ P S + L G Sbjct: 110 VVDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVKPEINPKLSEFCVGLTG 169 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + D+ + + + + + + Sbjct: 170 ITQDIVDKADTFPQVLQNVVDWMRQRELGTKYSYCMLTDGSWDMSKFLNIQCRVSRIKHP 229 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P ++ L + ++ G++ R H L DS ++ + I+M+ Sbjct: 230 SFAKKWINIRKSYGNFYKVPRNQTKLMIMLEKLGMSYDGRP-HSGLDDSKNIARIAIRML 288 Query: 176 VGGSQINFG 184 G Q+ Sbjct: 289 QDGCQLRVN 297 >gi|21224413|ref|NP_630192.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)] gi|13276811|emb|CAC33929.1| putative DNA polymerase [Streptomyces coelicolor A3(2)] Length = 244 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 FD+ETTG D + RI+ +E+ R + P Sbjct: 11 FDLETTGTDPREARIVTGAVIEVRGSEPLGRR-EWLADPG 49 >gi|322382088|ref|ZP_08056018.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153960|gb|EFX46310.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 142 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 6/89 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++ D ETTG++ + I++I ++L F + P EA +HGIT+ Sbjct: 56 KYLILDTETTGIEYDS-EIVDIAIIDLDKNLI----FASLVKP-ICPIPEEATMIHGITN 109 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96 E + D PS+ ++++ + + Sbjct: 110 EMVADAPSWLEVWAQVQKLLSGKTLLIYN 138 >gi|227113804|ref|ZP_03827460.1| oligoribonuclease [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227326226|ref|ZP_03830250.1| oligoribonuclease [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 180 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M+ +N I D+E TGL+ +DRIIEI Sbjct: 1 MVDEN--NLIWIDLEMTGLNPDHDRIIEIA 28 >gi|322411431|gb|EFY02339.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 820 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 9/104 (8%) Query: 4 KNKM--RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 N+M + V D+E T ++ II++G V +++ + T+Q + P+ S Sbjct: 2 SNEMTRKYAVVDLEAT--NAGATAAIIQVGIV-IIEGKEVVETYQTDINPH-EPLSDHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 L GITD L P FS + ++ ++ ++AHN KFD Sbjct: 58 DLTGITDAQLAQAPEFSQVAKTIYELISD--CVFVAHNVKFDAN 99 >gi|227832962|ref|YP_002834669.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum ATCC 700975] gi|227453978|gb|ACP32731.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum ATCC 700975] Length = 205 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 15/30 (50%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 D+ETT LD + +I+ IG V + Sbjct: 27 AVDMETTSLDPRRGKIVSIGWVPVNGGVID 56 >gi|222824026|ref|YP_002575600.1| DNA polymerase III, epsilon subunit [Campylobacter lari RM2100] gi|222539248|gb|ACM64349.1| DNA polymerase III, epsilon subunit [Campylobacter lari RM2100] Length = 254 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 6/114 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIE+TG K+ +I+EIGAV++ +Y + +R F+ F+ +L GI+ + + Sbjct: 74 VVDIESTGG-IKSGQILEIGAVKIQNYKEIDR-FESFVK--VESIPENITELTGISLDMV 129 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ++ PS ++ + F +++ ++AHN +FD FI+ + + L R+ Sbjct: 130 ENAPSLKTVLNNF--KLFLKDSIFVAHNVRFDYHFISKAMYENDFGVLLNRRLC 181 >gi|285018765|ref|YP_003376476.1| ribonuclease t (exoribonuclease t) (rnase t) protein [Xanthomonas albilineans GPE PC73] gi|283473983|emb|CBA16484.1| probable ribonuclease t (exoribonuclease t) (rnase t) protein [Xanthomonas albilineans] Length = 217 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 61/183 (33%), Gaps = 13/183 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D ++EI + + T + P G P++L++ G Sbjct: 27 VVVDVETGGFDWNRHALLEIAVIPIEMDAAGKLSPGDTASAHVVPAPGTVIDPKSLEITG 86 Query: 65 ITDEFLKD--------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + Q A + HNA FD+ F+NA + R Sbjct: 87 IVLDHPFRLAKPEREALEHVFTPVRAAVKKYGCQRAILVGHNAHFDLNFLNATVARCGHK 146 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ + L + G S H A+ D+ + ++ K+ Sbjct: 147 RNPFHPFSVFDTVTLAGIAYGQTVLARAVQAAGFEWSAADAHSAVYDTEQTARLFCKIAN 206 Query: 177 GGS 179 Sbjct: 207 AWP 209 >gi|86153724|ref|ZP_01071927.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612917|ref|YP_001000159.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni 81-176] gi|167005117|ref|ZP_02270875.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni 81-176] gi|85842685|gb|EAQ59897.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250067|gb|EAQ73025.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni 81-176] Length = 253 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 6/122 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIE+TG I+EIGAV++ + + R FQ F+ ++ +L GIT E + Sbjct: 74 IVDIESTGG-VSKGEILEIGAVKIQNSKEIAR-FQSFVK--VKEIPENITELTGITYEMV 129 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ PS + + S+F +++ ++AHN +FD FI+ L L RI Sbjct: 130 ENAPSLAKVLSDF--RLFLKDSIFVAHNVRFDYSFISRALNECGFGILLNRRICTIEFAQ 187 Query: 131 RR 132 Sbjct: 188 CC 189 >gi|121604376|ref|YP_981705.1| oligoribonuclease [Polaromonas naphthalenivorans CJ2] gi|120593345|gb|ABM36784.1| Exonuclease, RNase T and DNA polymerase III [Polaromonas naphthalenivorans CJ2] Length = 187 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 20/32 (62%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +++K+ + D E TGLD + +RIIEI V Sbjct: 7 LLKKSDQNLVWLDCEMTGLDPEKERIIEIAVV 38 >gi|256027838|ref|ZP_05441672.1| exonuclease, RNase T and DNA polymerase III [Fusobacterium sp. D11] gi|289765790|ref|ZP_06525168.1| exonuclease [Fusobacterium sp. D11] gi|289717345|gb|EFD81357.1| exonuclease [Fusobacterium sp. D11] Length = 191 Score = 44.9 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Query: 7 MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50 M KI+F D ET G++ + +I++ + +D + F ++ P Sbjct: 1 MNKIIFIDTETGGVNPEKSALIQLSGIIRIDKKDVEK-FNFYIKP 44 >gi|77460172|ref|YP_349679.1| exonuclease [Pseudomonas fluorescens Pf0-1] gi|77384175|gb|ABA75688.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 180 Score = 44.9 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 5/110 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63 +V D+E TT G IIEIGA + + FQ F+ P R +P +L Sbjct: 4 WLVIDLEATTDEGGWPVTEMEIIEIGATLVDRAGREQDHFQRFVKPTRRPLLTPFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 IT + S ++ F + + + D + Sbjct: 64 HITQANIDAAQPLSEVWPAFERWLGQHQTRLEGWASWGDYDRKQLLQEWQ 113 >gi|254427614|ref|ZP_05041321.1| exonuclease superfamily [Alcanivorax sp. DG881] gi|196193783|gb|EDX88742.1| exonuclease superfamily [Alcanivorax sp. DG881] Length = 181 Score = 44.9 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 17/29 (58%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + + I D+E TGL +NDRIIEI Sbjct: 1 MTDKRNNLIWIDLEMTGLSPENDRIIEIA 29 >gi|88601936|ref|YP_502114.1| exonuclease [Methanospirillum hungatei JF-1] gi|88187398|gb|ABD40395.1| Exonuclease [Methanospirillum hungatei JF-1] Length = 215 Score = 44.9 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 72/217 (33%), Gaps = 22/217 (10%) Query: 7 MRKIVFDIETTGLD-SKND---------RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKN 55 M+ ++FD E+TGL + D R++++ + T + + P+G Sbjct: 1 MKYLIFDTESTGLPREEKDPFHYPEYWPRMVQLAWILTDGETIITEENY--LIYPDGFVI 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 ++++HGIT+E +++ + +Q + HN FD + +E R Sbjct: 59 PSSSMEIHGITNERAREEGKPVLEVLSVFSESIKQADVLVGHNVSFDRSIVTSEYSRAKL 118 Query: 114 -------NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + A+ + S ++ H A D Sbjct: 119 NAPILKLPYHCTMKTSTEVCKLPAKGGRRGYKWPSLSELHQFLFEEPFEHAHDASADVRA 178 Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNI 203 Y+++ G K + ++++ P Sbjct: 179 CMRCYLELKNRGLFQELWTKPDPKEMKWKKRRNNPYY 215 >gi|255324350|ref|ZP_05365469.1| DNA polymerase III subunit epsilon [Corynebacterium tuberculostearicum SK141] gi|255298569|gb|EET77867.1| DNA polymerase III subunit epsilon [Corynebacterium tuberculostearicum SK141] Length = 432 Score = 44.9 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + ++TTG+ RI+ I A+ D + + F L P LHG++ Sbjct: 55 YVALTLQTTGIHPSTGRIVTIDAIAFNDAGEQGQLFHAVLKP---DIDAGPRHLHGLSTT 111 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103 ++ P+F I + + + Sbjct: 112 DIEQAPAFGKILKSLDKLIDGRTLIVHDLPYTWGF 146 >gi|77460741|ref|YP_350248.1| ribonuclease T [Pseudomonas fluorescens Pf0-1] gi|123603449|sp|Q3K7J7|RNT_PSEPF RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|77384744|gb|ABA76257.1| ribonuclease T [Pseudomonas fluorescens Pf0-1] Length = 224 Score = 44.9 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 69/186 (37%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI A + + + + T+ + P G P AL+ G Sbjct: 32 VVVDVETGGFNSATDALLEIAATTIAMDEKGFVYPDHTYFFRVEPFEGANVEPAALEFTG 91 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HN+ FD+GF+NA + R++ Sbjct: 92 IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 151 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I R H A D+ ++++ ++ Sbjct: 152 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAADIDFDGREAHSARYDTEKTAELFCGIVN 211 Query: 177 GGSQIN 182 Q+ Sbjct: 212 RWKQMG 217 >gi|114320658|ref|YP_742341.1| oligoribonuclease [Alkalilimnicola ehrlichii MLHE-1] gi|122311672|sp|Q0A8I6|ORN_ALHEH RecName: Full=Oligoribonuclease gi|114227052|gb|ABI56851.1| Exonuclease, RNase T and DNA polymerase III [Alkalilimnicola ehrlichii MLHE-1] Length = 193 Score = 44.9 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD DRIIEI Sbjct: 11 LDLEMTGLDPDTDRIIEIA 29 >gi|189500655|ref|YP_001960125.1| Exonuclease RNase T and DNA polymerase III [Chlorobium phaeobacteroides BS1] gi|189496096|gb|ACE04644.1| Exonuclease RNase T and DNA polymerase III [Chlorobium phaeobacteroides BS1] Length = 185 Score = 44.9 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 58/182 (31%), Gaps = 22/182 (12%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFL 70 D+ETTG + II+IGA+ + + P+ G AL + G + E L Sbjct: 8 IDVETTGTNPAKHGIIQIGAI-MEVSGIIAEELNLKCAPHSGADIDDHALTITGTSREEL 66 Query: 71 KDKPSFSSIFSEFWDFFNEQ--------NAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + S +F F N +N FD+ FI + S Sbjct: 67 THRMSSKEALLQFKQFLNRYVEQYDREDKCYPAGYNVHFDLDFIQQWFKMHGDKYGIGSY 126 Query: 123 ---------IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + L ++C+ YG H A D ++ K Sbjct: 127 VNWRRLDPLPVLFMKDFTGALHLPDYKLETVCRHYG---IRLEAHDAFSDIRATRELLTK 183 Query: 174 MM 175 ++ Sbjct: 184 LL 185 >gi|227550322|ref|ZP_03980371.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330] gi|227180544|gb|EEI61516.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330] Length = 201 Score = 44.9 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + + + V + + + F + P +++HGI Sbjct: 25 MNFVAMDFET--ANHQPYSACSLALVMVKNSQIVDE-FYTLIQPETPFF-WRNVQIHGIH 80 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +++ P F ++ +F + +AHNA FD + L + + + + Sbjct: 81 QEDVRNAPKFPEVWQTIQPYFQKNLLV-VAHNAAFDTKVLAGCLDYYHLEQPNYLSLCTV 139 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S R + LN++C+ I + H H AL DS +++ + Sbjct: 140 KSSRRLFPEFPNHRLNTVCENLNIQLDH--HHDALEDSRACAEILL 183 >gi|288928364|ref|ZP_06422211.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108] gi|288331198|gb|EFC69782.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108] Length = 165 Score = 44.9 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 6/119 (5%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+ D ET + K + + +G V + + ++ + P + +HG+ Sbjct: 1 MKDFAAIDFET--ANFKRESVCSVGLVLVEEGKIV-DSYYHLIQPTPNYFEERCVTVHGL 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 T +P+F +++E +N +AHN FD + A + + D Sbjct: 58 TTADTNGQPTFPDVWAEIAPLI--RNKPLVAHNKAFDESCLKAAFAAYDMEYPDYPFYC 114 >gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1] gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1] Length = 948 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 66/234 (28%), Gaps = 31/234 (13%) Query: 4 KNKMRK--IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 KN M + + FD ETTGL+ ++ I +T + F V P Sbjct: 369 KNLMNQTSVCFDTETTGLNPLTAELVGIAF-----SWETGKGFYV----------PFPED 413 Query: 62 LHGITDEFLKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + + +P F + E +N + + L +P Sbjct: 414 KNEAQELIEVLRPFFENDNIEKIGQNLKYDIKVLAKYNVEVKGKLFDTMLAHYLINPDMR 473 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + P S +L + +++ + +D+ +++ + Sbjct: 474 HNMDVLAETYLNYTPISITELIGKKGKNQLSMREVPLDKQTEYAVEDADITLQLKEHFEK 533 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE-LDEHDKTIQTLGK 233 E T + ++ + E ++ + +L + Sbjct: 534 ------------ELGEANTQKLFNDIELPLLRVLAAMELEGINLDKDFLNSLSE 575 >gi|331677519|ref|ZP_08378194.1| ribonuclease T (Exoribonuclease T) (RNase T) [Escherichia coli H591] gi|331073979|gb|EGI45299.1| ribonuclease T (Exoribonuclease T) (RNase T) [Escherichia coli H591] Length = 57 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 18/26 (69%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL 35 +V D+ET G ++K D ++EI A+ L Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLK 45 >gi|37528414|ref|NP_931759.1| oligoribonuclease [Photorhabdus luminescens subsp. laumondii TTO1] gi|41017433|sp|Q7MYS8|ORN_PHOLL RecName: Full=Oligoribonuclease gi|36787852|emb|CAE16967.1| oligoribonuclease [Photorhabdus luminescens subsp. laumondii TTO1] Length = 181 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + K++ I D+E TGLD + DRIIEI Sbjct: 1 MSKSEHNLIWIDLEMTGLDPERDRIIEIA 29 >gi|237752604|ref|ZP_04583084.1| DNA polymerase III subunit epsilon [Helicobacter winghamensis ATCC BAA-430] gi|229376093|gb|EEO26184.1| DNA polymerase III subunit epsilon [Helicobacter winghamensis ATCC BAA-430] Length = 267 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 5/114 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIET G + IEIG +++ + F+ F+ + K+ GI + L Sbjct: 73 IVDIETNGHNPCVHTPIEIGTLKVRNGKVV-DCFESFV--FNAEIPEYITKITGINAQML 129 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ++ P +S+ +F ++ ++AHN FD F++ L++ L R+ Sbjct: 130 ENAPKLASVLEKF--KLFLGDSIFVAHNVDFDYNFLSQSLEKCGFGYLYNPRLC 181 >gi|255011868|ref|ZP_05283994.1| putative exonuclease [Bacteroides fragilis 3_1_12] gi|313149703|ref|ZP_07811896.1| DNA polymerase III [Bacteroides fragilis 3_1_12] gi|313138470|gb|EFR55830.1| DNA polymerase III [Bacteroides fragilis 3_1_12] Length = 175 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 8/175 (4%) Query: 9 KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 D ET TG + G V + D T+ + + P + + +HGIT Sbjct: 5 FAAIDFETATGYMESACAV---GIVTVTDGEITDE-YYSLIQPPENEYWRANILVHGITP 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + P F +I+ E + +V + R++ D L + Sbjct: 61 EMTESLPGFHAIYPEIKKRLQGKVVVAHNEQFDRNVLKRTMRMYRLDYDELLLPEHWECT 120 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R +L++ C+R G H AL D+ + +Y+ + N Sbjct: 121 CRIYRSLGYKPVNLSACCEREG---IELKHHEALSDARGCAKLYLNYLERYRPFN 172 >gi|239629146|ref|ZP_04672177.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519292|gb|EEQ59158.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 315 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 52/180 (28%), Gaps = 12/180 (6%) Query: 7 MRKIVFDIE-TTGLDSKND-------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M IV D+E + K D IIEIGAV L + F + P K Sbjct: 1 MNYIVLDLEWNQSPNGKEDSVEHLPFEIIEIGAVMLDHQFRAAGEFHKLIKPQVYKKMHF 60 Query: 59 ALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRIN 114 + D ++ F ++ EF D+ E + + + ++ + Sbjct: 61 KISEVTHMDMKKLCQEGQPFKAVMQEFLDWCGEGDFRFCTWGSMDLTELQRNMIYHKMEI 120 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P + + R H AL D++ + + Sbjct: 121 PFPRPLLYYDIQKLYCLQYGDGKNKVSLDQAVQLQGMAEDRPFHRALDDAYYTGKILSVL 180 >gi|332669588|ref|YP_004452596.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC 484] gi|332338626|gb|AEE45209.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC 484] Length = 239 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 2/40 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 FD ETTGLD DRI+ V RT+ L P Sbjct: 11 FDTETTGLDVDRDRIVTAALVRRDAAGTHVRTW--LLDPG 48 >gi|325265748|ref|ZP_08132436.1| epsilon subunit family exonuclease [Kingella denitrificans ATCC 33394] gi|324982788|gb|EGC18412.1| epsilon subunit family exonuclease [Kingella denitrificans ATCC 33394] Length = 43 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 10 IVFDIETTGLDSKNDRIIEIG 30 ++ D+ETTG + + DRI EI Sbjct: 20 VILDLETTGGNFQRDRITEIA 40 >gi|291454901|ref|ZP_06594291.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] gi|291357850|gb|EFE84752.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] Length = 247 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTF 44 FD+ETTG D + RI+ +E+ D + RT+ Sbjct: 21 FDLETTGTDPREARIVTAAVIEVADGERRGHRTW 54 >gi|261823163|ref|YP_003261269.1| oligoribonuclease [Pectobacterium wasabiae WPP163] gi|261607176|gb|ACX89662.1| Exonuclease RNase T and DNA polymerase III [Pectobacterium wasabiae WPP163] Length = 180 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M+ +N I D+E TGL+ +DRIIEI Sbjct: 1 MVDEN--NLIWIDLEMTGLNPDHDRIIEIA 28 >gi|239983070|ref|ZP_04705594.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] Length = 237 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTF 44 FD+ETTG D + RI+ +E+ D + RT+ Sbjct: 11 FDLETTGTDPREARIVTAAVIEVADGERRGHRTW 44 >gi|197287169|ref|YP_002153041.1| oligoribonuclease [Proteus mirabilis HI4320] gi|194684656|emb|CAR46589.1| oligoribonuclease [Proteus mirabilis HI4320] Length = 181 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 11 IDLEMTGLDPERDRIIEIA 29 >gi|146300607|ref|YP_001195198.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium johnsoniae UW101] gi|146155025|gb|ABQ05879.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium johnsoniae UW101] Length = 198 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQ 45 + +V ET+GL+ D I+ +GA ++D F+ Sbjct: 29 KFVVLSTETSGLNPNKDVILSLGAFSVIDDSIIIKENFE 67 >gi|257895239|ref|ZP_05674892.1| exonuclease [Enterococcus faecium Com12] gi|257897861|ref|ZP_05677514.1| exonuclease [Enterococcus faecium Com15] gi|293377229|ref|ZP_06623434.1| exonuclease [Enterococcus faecium PC4.1] gi|257831804|gb|EEV58225.1| exonuclease [Enterococcus faecium Com12] gi|257835773|gb|EEV60847.1| exonuclease [Enterococcus faecium Com15] gi|292644090|gb|EFF62195.1| exonuclease [Enterococcus faecium PC4.1] Length = 177 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + + + V + + + F + P +++HGI Sbjct: 1 MNFVAMDFET--ANHQPYSACSLALVMVKNSQIVDE-FYTLIQPETPFF-WRNVQIHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +++ P F ++ +F + +AHNA FD + L + + + + Sbjct: 57 QEDVRNAPKFPEVWQTIQPYFQKNLLV-VAHNAAFDTKVLAGCLDYYHLEQPNYLSLCTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S R + LN++C+ I + H H AL DS +++ + Sbjct: 116 KSSRRLFPEFPNHRLNTVCENLNIQLDH--HHDALEDSRACAEILL 159 >gi|115379647|ref|ZP_01466730.1| DNA polymerase III epsilon subunit [Stigmatella aurantiaca DW4/3-1] gi|310819920|ref|YP_003952278.1| exonuclease [Stigmatella aurantiaca DW4/3-1] gi|115363357|gb|EAU62509.1| DNA polymerase III epsilon subunit [Stigmatella aurantiaca DW4/3-1] gi|309392992|gb|ADO70451.1| Exonuclease [Stigmatella aurantiaca DW4/3-1] Length = 219 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNG-RKNSPEALKLHGITDE 68 D+ETTGLD+ ++E+ + + S ++ + P PEAL + G +DE Sbjct: 33 FVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEARVQPTRLADAHPEALAVCGYSDE 92 Query: 69 FL 70 Sbjct: 93 EW 94 >gi|257886664|ref|ZP_05666317.1| exonuclease [Enterococcus faecium 1,141,733] gi|257822718|gb|EEV49650.1| exonuclease [Enterococcus faecium 1,141,733] Length = 177 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + + + V + + + F + P +++HGI Sbjct: 1 MNFIAMDFET--ANHQPYSACSLALVMVKNSQIVDE-FYTLIQPETPFF-WRNVQIHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +++ P F ++ +F + +AHNA FD + L + + + + Sbjct: 57 QEDVRNAPKFPEVWQTIQPYFQKNRLV-VAHNAAFDTKVLAGCLDYYHLEQPNYLSLCTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S R + LN++C+ I + H H AL DS +++ + Sbjct: 116 KSSRRLFPEFPNHRLNTVCENLNIQLDH--HHDALEDSRACAEILL 159 >gi|254510966|ref|ZP_05123033.1| exonuclease [Rhodobacteraceae bacterium KLH11] gi|221534677|gb|EEE37665.1| exonuclease [Rhodobacteraceae bacterium KLH11] Length = 334 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 68/205 (33%), Gaps = 8/205 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + D+ET +S I +IG + D T TF + P P + +HGI Sbjct: 45 RFVALDVET--ANSDASSICQIGF-AVSDGQGTILTFGTLIHPET-SFDPFNIGIHGIDA 100 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P F + F F + ++ FD +NA R + L + + Sbjct: 101 DAVSTAPVFPEVLQTFRAFLERH---PLVQHSSFDKRAVNAACDRYDIPKLRSNWHDSVV 157 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 R N + L + H A+ D+ + V + + + F T Sbjct: 158 MARRAWPELKGNGGHGLANLKEVLGLEFDHHDAIEDAKAAAHVVL-LAEEATGKGFEDLT 216 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPL 212 ++ + ++ + Sbjct: 217 SKQSSGPIASERSRSVEGNQNGPLY 241 >gi|152996651|ref|YP_001341486.1| oligoribonuclease [Marinomonas sp. MWYL1] gi|150837575|gb|ABR71551.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1] Length = 185 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 7/62 (11%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70 D+E TGLD + D IIEI V T++ V P+ + +A+ Sbjct: 11 IDLEMTGLDPETDTIIEIATV------VTDKHLNVLAKGPSLAIHQEKAVMDAMDEWCTQ 64 Query: 71 KD 72 Sbjct: 65 HH 66 >gi|148652365|ref|YP_001279458.1| DNA polymerase III subunit epsilon [Psychrobacter sp. PRwf-1] gi|148571449|gb|ABQ93508.1| Exonuclease, RNase T and DNA polymerase III [Psychrobacter sp. PRwf-1] Length = 201 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 54/173 (31%), Gaps = 12/173 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D E +GL++K + ++ I A+ + T + + P + Sbjct: 33 WVAIDCEMSGLNAKKNHLLSIAAIHINGSVIDTGQGLHLICRPPVMPTKDTIIIHGLRPI 92 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR----- 122 + + N + + D+ F+N ++ L Sbjct: 93 DVENGLSYEQMLAKLLP---FIGNRPIVGFCPQLDISFLNPLVKAYMGTYLPNPVIDIRT 149 Query: 123 -IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + P + L+++C++ + H A D+ + + ++ + Sbjct: 150 LYNRYSGNRTQGIPHQSSHLSAICQQLKLPDMAA--HDAYNDAIMTAMAFLLL 200 >gi|90416474|ref|ZP_01224405.1| oligoribonuclease [marine gamma proteobacterium HTCC2207] gi|90331673|gb|EAS46901.1| oligoribonuclease [marine gamma proteobacterium HTCC2207] Length = 188 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL + DRIIEI V Sbjct: 18 IDLEMTGLSPERDRIIEIATV 38 >gi|238755817|ref|ZP_04617148.1| Exodeoxyribonuclease 10 [Yersinia ruckeri ATCC 29473] gi|238705975|gb|EEP98361.1| Exodeoxyribonuclease 10 [Yersinia ruckeri ATCC 29473] Length = 249 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 17/172 (9%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 KM V D ET GLD I+EI +++ +D T + P+ R S EA+ +H I Sbjct: 29 KMNFRVIDTETCGLD---GGIVEIASLDFIDGEIT-NPMSDLVSPD-RPISIEAMAIHHI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+E ++ KP + ++ + ++AHNA FD G + + Sbjct: 84 TEEMVEGKPRIAVAVGKYQ-----GSPYYVAHNAPFDRGVLPEMGGEWICTYKLARALYP 138 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + + + + H AL D ++ + ++ ++M Sbjct: 139 DIKYSNQYLRYALRLDVTPPADLYP-------HRALYDCYITAALFQRIMRD 183 >gi|126011010|ref|YP_001039760.1| gram-positive type DNA polymerase III alpha subunit [Burkholderia ambifaria phage BcepF1] gi|119712586|gb|ABL96807.1| gram-positive type DNA polymerase III alpha subunit [Burkholderia ambifaria phage BcepF1] Length = 197 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 8/52 (15%) Query: 7 MRKIVFDIETTGLDS-------KNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 M VFD ETTGL S + RIIE + + D T + P Sbjct: 1 MIFTVFDTETTGLPSHPLAPLDRQPRIIEFAGI-VTDGRDILHTLEFRCNPG 51 >gi|300704711|ref|YP_003746314.1| oligoribonuclease [Ralstonia solanacearum CFBP2957] gi|299072375|emb|CBJ43713.1| oligoribonuclease [Ralstonia solanacearum CFBP2957] Length = 219 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL +NDRIIE+ V Sbjct: 33 LDMEMTGLSPENDRIIEVAMV 53 >gi|326318064|ref|YP_004235736.1| exonuclease RNase T and DNA polymerase III [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374900|gb|ADX47169.1| Exonuclease RNase T and DNA polymerase III [Acidovorax avenae subsp. avenae ATCC 19860] Length = 193 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 ++ K+ + + D E TGLD + DR++EI V Sbjct: 12 VLPKSDLNFVWLDCEMTGLDPEKDRLLEIAVV 43 >gi|253991561|ref|YP_003042917.1| oligoribonuclease [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638439|emb|CAR67061.1| oligoribonuclease (ec 3.1.-.-) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783011|emb|CAQ86176.1| oligoribonuclease [Photorhabdus asymbiotica] Length = 181 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + K++ I D+E TGLD + DRIIEI Sbjct: 1 MSKSEHNLIWIDLEMTGLDPERDRIIEIA 29 >gi|120610573|ref|YP_970251.1| oligoribonuclease [Acidovorax citrulli AAC00-1] gi|166215745|sp|A1TND9|ORN_ACIAC RecName: Full=Oligoribonuclease gi|120589037|gb|ABM32477.1| Exonuclease, RNase T and DNA polymerase III [Acidovorax citrulli AAC00-1] Length = 193 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 ++ K+ + + D E TGLD + DR++EI V Sbjct: 12 VLPKSDLNFVWLDCEMTGLDPEKDRLLEIAVV 43 >gi|319955911|ref|YP_004167174.1| DNA polymerase iii, epsilon subunit [Nitratifractor salsuginis DSM 16511] gi|319418315|gb|ADV45425.1| DNA polymerase III, epsilon subunit [Nitratifractor salsuginis DSM 16511] Length = 272 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 7/173 (4%) Query: 1 MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M +M+ + DIET G ++IEIGAV L + +R + F+ Sbjct: 64 MFTPWQMQEYCIIDIETNGSKPGRSQVIEIGAVMLKEGKIIDR-LETFV--ACAYLPEHI 120 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +KL GI L + PS ++ +F + A + AHNA FD GF+NA QR P+ Sbjct: 121 IKLTGIEPTDLAEAPSRKEALTQLRNFMGD--AVFTAHNAGFDHGFLNASFQRFGLGPIG 178 Query: 120 PSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 L+ + + G+ HR+ + AL S +L + Sbjct: 179 NPVLCTIDLARRTFESERYGLAYLNESLDLGMQAHHRAYNDALAASKVLMKSF 231 >gi|306841731|ref|ZP_07474417.1| DNA polymerase III, epsilon chain [Brucella sp. BO2] gi|306288136|gb|EFM59523.1| DNA polymerase III, epsilon chain [Brucella sp. BO2] Length = 193 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 4/158 (2%) Query: 24 DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83 DRII +GAV++ ++ + P + +SP+A +HG + + + F + + Sbjct: 4 DRIITLGAVKIEGDELLTQSLYLIFDP-RKDSSPQAEAIHGFDNWMTRYQDLFHELAAPI 62 Query: 84 WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNS 143 + E +AHNA+FD+ +I E ++ D LD R Sbjct: 63 RKW-FSWADEVVAHNAQFDIHYIQREFRKAEVDMLDQPVYCTMEGARRLW--RGDPAKLD 119 Query: 144 LCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 C +HGAL D++L + +Y+ + Sbjct: 120 HCLAKIGLARTGHRHGALEDAYLTAGLYLHQQGVAKPL 157 >gi|329889237|ref|ZP_08267580.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568] gi|328844538|gb|EGF94102.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568] Length = 211 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 5/150 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + + IG + D + ++ P G + + + HGI Sbjct: 8 MHAVAIDFET--ANEQRASPCSIGLAWINDGVIESVE-HHYIRPPGMRFASFNIAFHGIG 64 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++D F ++ + +AHNA FDV I + + Sbjct: 65 PEQVEDAEEFPAVLAAIAPRLEG--RTVLAHNAAFDVSVIRNTCDHYGLTYPEFDYLCTV 122 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156 + LN++C G+ H Sbjct: 123 KLAQISWPEFPSHKLNNVCAELGVAFRHHD 152 >gi|323126941|gb|ADX24238.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 820 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 9/104 (8%) Query: 4 KNKM--RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 N+M + V D+E T ++ II++G V +++ + T+Q + P+ S Sbjct: 2 SNEMTRKYAVVDLEAT--NAGATAAIIQVGIV-IIEGKEVVETYQTDINPH-EPLSDHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 L GITD L P FS + ++ ++ ++AHN KFD Sbjct: 58 ALTGITDAQLAQAPEFSQVAKTIYELISD--CVFVAHNVKFDAN 99 >gi|251782080|ref|YP_002996382.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390709|dbj|BAH81168.1| ATP-dependent DNA helicase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 820 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 9/104 (8%) Query: 4 KNKM--RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 N+M + V D+E T ++ II++G V +++ + T+Q + P+ S Sbjct: 2 SNEMTRKYAVVDLEAT--NAGATAAIIQVGIV-IIEGKEVVETYQTDINPH-EPLSDHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 L GITD L P FS + ++ ++ ++AHN KFD Sbjct: 58 ALTGITDAQLAQAPEFSQVAKTIYELISD--CVFVAHNVKFDAN 99 >gi|227357138|ref|ZP_03841507.1| exoribonuclease II [Proteus mirabilis ATCC 29906] gi|227162670|gb|EEI47637.1| exoribonuclease II [Proteus mirabilis ATCC 29906] Length = 192 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 22 IDLEMTGLDPERDRIIEIA 40 >gi|12519147|gb|AAG59361.1|AE005649_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13364618|dbj|BAB38564.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|209750348|gb|ACI73481.1| hypothetical protein ECs5141 [Escherichia coli] gi|209750350|gb|ACI73482.1| hypothetical protein ECs5141 [Escherichia coli] gi|209750352|gb|ACI73483.1| hypothetical protein ECs5141 [Escherichia coli] gi|209750354|gb|ACI73484.1| hypothetical protein ECs5141 [Escherichia coli] gi|209750356|gb|ACI73485.1| hypothetical protein ECs5141 [Escherichia coli] Length = 204 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 24 MSANENNLIWIDLEMTGLDPERDRIIEIA 52 >gi|311741087|ref|ZP_07714912.1| DNA polymerase III epsilon subunit [Corynebacterium pseudogenitalium ATCC 33035] gi|311303889|gb|EFQ79967.1| DNA polymerase III epsilon subunit [Corynebacterium pseudogenitalium ATCC 33035] Length = 432 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + ++TTG+ RI+ I A+ D + + F L P LHG++ Sbjct: 55 YVALTLQTTGIHPSTGRIVTIDAIAFNDAGEQGQLFHAVLKP---DIDAGPRHLHGLSTT 111 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103 ++ P+F I + + + Sbjct: 112 DIEQAPAFGKILKSLDRLIDGRTLIVHDLPYTWGF 146 >gi|330502360|ref|YP_004379229.1| ribonuclease T [Pseudomonas mendocina NK-01] gi|328916646|gb|AEB57477.1| ribonuclease T [Pseudomonas mendocina NK-01] Length = 224 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 66/193 (34%), Gaps = 13/193 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVF-LCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI A + F + P G AL+ G Sbjct: 32 VVVDVETGGFNSATDALLEIAATTIAMDESGFLYPDHTHFFRIEPFEGANIEQAALEFTG 91 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HN+ FD+GF+NA + R Sbjct: 92 IKLDHPLRMAVSEEHALGEIFKGLRKSIKSAGCKRAILVGHNSSFDLGFLNAAVARCGIK 151 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI + H A D+ ++++ ++ Sbjct: 152 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIEFDGKEAHSARYDTEKTAELFCGIVN 211 Query: 177 GGSQINFGFKTNE 189 ++ + ++ Sbjct: 212 RWKEMGGWDEFDQ 224 >gi|301023446|ref|ZP_07187227.1| exonuclease [Escherichia coli MS 69-1] gi|300396998|gb|EFJ80536.1| exonuclease [Escherichia coli MS 69-1] Length = 199 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 19 MSANENNLIWIDLEMTGLDPERDRIIEIA 47 >gi|213965286|ref|ZP_03393483.1| putative DNA polymerase III epsilon subunit [Corynebacterium amycolatum SK46] gi|213952138|gb|EEB63523.1| putative DNA polymerase III epsilon subunit [Corynebacterium amycolatum SK46] Length = 545 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 66/176 (37%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEALKLHGIT 66 FD+ET + II++G + T R + P + +HGIT Sbjct: 166 FAAFDVET--ANEDTGSIIQLGVAVVRGGKVTER-YSWMCRPPKGLEYFDEANVAIHGIT 222 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +PSF ++F D + + +AHNA+FD ++ + + Sbjct: 223 AADVAGEPSFPEQLAKFVD--VVGDLDVVAHNARFDFTALSRACRAEGIPAPKLNFACTY 280 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + + + L +L + G + + H A D+ ++V + +M + Sbjct: 281 MWARQMQLGLPNLKLPTLAEAAGAS--LENHHDATADAVACAEVALWLMEQQRATS 334 >gi|332290039|ref|YP_004420891.1| oligoribonuclease [Gallibacterium anatis UMN179] gi|330432935|gb|AEC17994.1| oligoribonuclease [Gallibacterium anatis UMN179] Length = 182 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 ++ +K I D+E TGLD DRIIEI Sbjct: 1 MQLDKQNLIWIDLEMTGLDPNKDRIIEIA 29 >gi|268679542|ref|YP_003303973.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum deleyianum DSM 6946] gi|268617573|gb|ACZ11938.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum deleyianum DSM 6946] Length = 292 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 6/184 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I+ D ETTG+ + DRI ++ + L + + P + H Sbjct: 1 MKIILLDTETTGI-YEKDRICQLAFLVLNEELEVEEIHNDLCQPPVMISYEAMAVHHITP 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + + N + HNA FD+ + E + +D RI+ Sbjct: 60 ERVAHEVSCIQTRAYQRLLELNTPYNLLVIHNASFDLTMLEKEGFVSQMNLVDTFRILRA 119 Query: 127 LSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + + H AL D +L ++ K+ S Sbjct: 120 YYPNEGSFSLQYKRYQWGLYHQEATFQKKHTVSIEAHDALGDVVVLKHLFEKLCEEHSLP 179 Query: 182 NFGF 185 Sbjct: 180 QMML 183 >gi|207743707|ref|YP_002260099.1| oligoribonuclease protein [Ralstonia solanacearum IPO1609] gi|206595106|emb|CAQ62033.1| oligoribonuclease protein [Ralstonia solanacearum IPO1609] Length = 219 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL +NDRIIE+ V Sbjct: 33 LDMEMTGLSPENDRIIEVAMV 53 >gi|239918000|ref|YP_002957558.1| DNA polymerase III, epsilon subunit [Micrococcus luteus NCTC 2665] gi|281415824|ref|ZP_06247566.1| DNA polymerase III subunit epsilon [Micrococcus luteus NCTC 2665] gi|239839207|gb|ACS31004.1| DNA polymerase III, epsilon subunit [Micrococcus luteus NCTC 2665] Length = 228 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 69/202 (34%), Gaps = 3/202 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG D + I+ V + ++ + + + + P + A T+ Sbjct: 11 FDLETTGRDPRTALIVTATLVMVDEHGRAASSAEWLVDPGVPIPAEAAEVHGVTTERAQA 70 Query: 72 DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +E + + +A N +D ++ E +R PL+ +ID Sbjct: 71 EGMPAAQGVTEITETLRDLFAAGIPVVAFNGVYDFTVMDREARRHGLTPLEARPVIDPFV 130 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + ++ + ++ + H + D+ V + Q+ Sbjct: 131 LDKQVDRFRKGKRTLSAVSEHYGVTLENAHTSAADALAAVQVADALAAQYEQLRMAPAEL 190 Query: 189 EDRFFKEEKKTVPNISLLKRDK 210 +R + + + + R K Sbjct: 191 HERQVRWKAEQAESFEQYLRRK 212 >gi|167034808|ref|YP_001670039.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida GB-1] gi|166861296|gb|ABY99703.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida GB-1] Length = 183 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 5/112 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 +V D+E TT G IIEIGA + + FQ F+ P R +P +L Sbjct: 4 WLVIDLEATTDEGGWPVTEMEIIEIGASLVTREGREVDHFQRFVRPRRRPQLTPFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I+ + F +++ + + A + D + Sbjct: 64 HISQADVDSAAPFREVWANVERWLGHHRGQLQAWVSWGDYDRQQLHQEWQQH 115 >gi|255633388|gb|ACU17051.1| unknown [Glycine max] Length = 242 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN 41 D+E TGL+ + DRI+EI + + D + T Sbjct: 64 IDLEMTGLNIEVDRILEIACI-ITDGNLTK 92 >gi|70731551|ref|YP_261292.1| exonuclease [Pseudomonas fluorescens Pf-5] gi|68345850|gb|AAY93456.1| exonuclease [Pseudomonas fluorescens Pf-5] Length = 179 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 5/130 (3%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 +V D+E TT G IIEIGA + + FQ F+ P R +P +L Sbjct: 4 WLVIDLEATTDEGGWPVSEMEIIEIGATLVNRQGREQDHFQRFVRPLRRPMLTPFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 IT + S ++ F + + + D +L+ N+ Sbjct: 64 HITQANIDSAAPLSEVWGLFERWLGQHQPRLEGWASWGDYDRKQLQLEWHNQQLHSLLNE 123 Query: 124 IDTLSIARRK 133 + +++ +R Sbjct: 124 VPHMNLKQRF 133 >gi|187927908|ref|YP_001898395.1| oligoribonuclease [Ralstonia pickettii 12J] gi|187724798|gb|ACD25963.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii 12J] Length = 219 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL +NDRIIE+ V Sbjct: 33 LDMEMTGLSPENDRIIEVAVV 53 >gi|91213714|ref|YP_543700.1| oligoribonuclease [Escherichia coli UTI89] gi|237703830|ref|ZP_04534311.1| oligoribonuclease [Escherichia sp. 3_2_53FAA] gi|254037177|ref|ZP_04871254.1| oligoribonuclease [Escherichia sp. 1_1_43] gi|332280947|ref|ZP_08393360.1| oligoribonuclease [Shigella sp. D9] gi|26111489|gb|AAN83671.1|AE016771_182 Oligoribonuclease [Escherichia coli CFT073] gi|91075288|gb|ABE10169.1| oligoribonuclease [Escherichia coli UTI89] gi|226840283|gb|EEH72285.1| oligoribonuclease [Escherichia sp. 1_1_43] gi|226901742|gb|EEH88001.1| oligoribonuclease [Escherichia sp. 3_2_53FAA] gi|332103299|gb|EGJ06645.1| oligoribonuclease [Shigella sp. D9] Length = 220 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 40 MSANENNLIWIDLEMTGLDPERDRIIEIA 68 >gi|213420151|ref|ZP_03353217.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 77 Score = 44.5 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 18/26 (69%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL 35 +V D+ET G ++K D ++EI A+ L Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLK 45 >gi|158284602|ref|XP_307582.4| Anopheles gambiae str. PEST AGAP012804-PA [Anopheles gambiae str. PEST] gi|157020970|gb|EAA03378.5| AGAP012804-PA [Anopheles gambiae str. PEST] Length = 228 Score = 44.5 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 18/32 (56%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 M + + D+E TGLD + DRI+EI + Sbjct: 38 MSETSVQNLVWIDLEMTGLDVEKDRILEIACI 69 >gi|83745794|ref|ZP_00942851.1| Oligoribonuclease [Ralstonia solanacearum UW551] gi|83727484|gb|EAP74605.1| Oligoribonuclease [Ralstonia solanacearum UW551] Length = 289 Score = 44.5 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL +NDRIIE+ V Sbjct: 103 LDMEMTGLSPENDRIIEVAMV 123 >gi|304393986|ref|ZP_07375910.1| exodeoxyribonuclease 10 [Ahrensia sp. R2A130] gi|303293961|gb|EFL88337.1| exodeoxyribonuclease 10 [Ahrensia sp. R2A130] Length = 230 Score = 44.5 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 58/171 (33%), Gaps = 15/171 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 V D ETTG ++EI +L +++ T L P EA+ +H IT Sbjct: 9 VIDTETTGFLPD-ASMVEIAWTDLLVGDDGFAEIGETISHLLKPK-HPIGLEAMAVHHIT 66 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P + + + AHNA FD GF + + I D Sbjct: 67 EAMVADAPMLGQLDP----QPSIGSDYLAAHNADFDKGFYPVDREWICTLKCSRRLWEDA 122 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S N + H A DS++ + + +M+ Sbjct: 123 PSHKNGVLRYWLNLDADM-----DYDRTLPAHRAGPDSYVTAYLLERMLRE 168 >gi|307243536|ref|ZP_07525684.1| exonuclease [Peptostreptococcus stomatis DSM 17678] gi|306493092|gb|EFM65097.1| exonuclease [Peptostreptococcus stomatis DSM 17678] Length = 460 Score = 44.5 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 8/47 (17%) Query: 9 KIVFDIETTG---LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52 + D+E TG L+ IIE+ A+++ D + F + P Sbjct: 19 YVAIDLELTGNYCLNY----IIELAALKVRDGVIIDE-FSSLVRPPD 60 >gi|167470349|ref|ZP_02335053.1| ribonuclease T [Yersinia pestis FV-1] Length = 64 Score = 44.5 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 19/25 (76%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34 +V D+ET G ++++D ++EI AV L Sbjct: 31 VVIDVETAGFNAQSDALLEIAAVTL 55 >gi|149203420|ref|ZP_01880390.1| DNA polymerase III subunit epsilon [Roseovarius sp. TM1035] gi|149143253|gb|EDM31292.1| DNA polymerase III subunit epsilon [Roseovarius sp. TM1035] Length = 172 Score = 44.5 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 18/35 (51%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ 45 V D+ETTGL + D +I++ + T R + Sbjct: 51 VLDVETTGLSHEADEVIQLAMLPFTYELNTGRILE 85 >gi|300920814|ref|ZP_07137214.1| exonuclease [Escherichia coli MS 115-1] gi|537006|gb|AAA97061.1| ORF_o204a [Escherichia coli str. K-12 substr. MG1655] gi|73858127|gb|AAZ90834.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81243603|gb|ABB64313.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|115515635|gb|ABJ03710.1| oligoribonuclease [Escherichia coli APEC O1] gi|300412206|gb|EFJ95516.1| exonuclease [Escherichia coli MS 115-1] Length = 204 Score = 44.5 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 24 MSANENNLIWIDLEMTGLDPERDRIIEIA 52 >gi|108757524|ref|YP_635264.1| oligoribonuclease [Myxococcus xanthus DK 1622] gi|108461404|gb|ABF86589.1| oligoribonuclease [Myxococcus xanthus DK 1622] Length = 183 Score = 44.5 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 MI + R + D+E TGLD + IIE+G + Sbjct: 1 MISSEQ-RFVWLDLEMTGLDPETCSIIEVGVI 31 >gi|163816457|ref|ZP_02207821.1| hypothetical protein COPEUT_02646 [Coprococcus eutactus ATCC 27759] gi|158448157|gb|EDP25152.1| hypothetical protein COPEUT_02646 [Coprococcus eutactus ATCC 27759] Length = 232 Score = 44.5 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%) Query: 1 MIRKNK---MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLC 49 MIR K M IV D+E LD K + +IEIGAV + + + F++++ Sbjct: 1 MIRCRKGAKMVHIVVDLEMNWLDFKYENERKISTNEVIEIGAVTMNEKFEEIGAFKMYVK 60 Query: 50 PNGRKNSPEALKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 P + + ++ GIT + L+D P F+ F F + E + + Sbjct: 61 PQFNEKVVKKVEKLTGITMDKLQDSPVFADAFDAFIKWCISFGEEVVMYGW 111 >gi|146306423|ref|YP_001186888.1| ribonuclease T [Pseudomonas mendocina ymp] gi|145574624|gb|ABP84156.1| RNAse T [Pseudomonas mendocina ymp] Length = 224 Score = 44.5 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 66/193 (34%), Gaps = 13/193 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVF-LCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI A + F + P G AL+ G Sbjct: 32 VVVDVETGGFNSATDALLEIAATTIAMDESGFLYPDHTHFFRIEPFEGANIEAAALEFTG 91 Query: 65 ITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HN+ FD+GF+NA + R Sbjct: 92 IKLDHPLRMAVSEEHALGEIFKGLRKSIKSAGCKRAILVGHNSSFDLGFLNAAVARCGIK 151 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI + H A D+ ++++ ++ Sbjct: 152 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIEFDGKEAHSARYDTEKTAELFCGIVN 211 Query: 177 GGSQINFGFKTNE 189 ++ + ++ Sbjct: 212 RWKEMGGWDEFDQ 224 >gi|308179821|ref|YP_003923949.1| DNA-directed DNA polymerase III, epsilon chain (putative) [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045312|gb|ADN97855.1| DNA-directed DNA polymerase III, epsilon chain (putative) [Lactobacillus plantarum subsp. plantarum ST-III] Length = 173 Score = 44.5 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 7/160 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D ET ++K D + + + ++ F + P +++HGI + + D Sbjct: 2 DFET--ANAKRDSACSLALTVVRNNQISDE-FYTLIKPES-DFFWRNVQIHGIHEADVAD 57 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P F + + F +++ IAHNA FD+G + L + + + R Sbjct: 58 APKF-PDVWQHIEPFFQRDRLVIAHNAPFDIGVLRNTLAHYGISAPEYLSMDTVNTSQRF 116 Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + L+++C+ I + H H AL DS +++ + Sbjct: 117 YPELPNHKLDTVCQALDIDLQH--HHNALDDSLACANILL 154 >gi|110346113|gb|ABG72350.1| oligoribonuclease [Escherichia coli 536] Length = 229 Score = 44.5 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 49 MSANENNLIWIDLEMTGLDPERDRIIEIA 77 >gi|300721471|ref|YP_003710746.1| oligoribonuclease [Xenorhabdus nematophila ATCC 19061] gi|297627963|emb|CBJ88512.1| oligoribonuclease [Xenorhabdus nematophila ATCC 19061] Length = 181 Score = 44.5 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 11 IDLEMTGLDPERDRIIEIA 29 >gi|30043801|gb|AAP19520.1| hypothetical protein S4584 [Shigella flexneri 2a str. 2457T] gi|56384132|gb|AAN45737.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|110617631|gb|ABF06298.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|281603627|gb|ADA76611.1| Oligoribonuclease [Shigella flexneri 2002017] Length = 204 Score = 44.2 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 24 MSANENNLIWIDLEMTGLDPERDRIIEIA 52 >gi|299132766|ref|ZP_07025961.1| Exodeoxyribonuclease I [Afipia sp. 1NLS2] gi|298592903|gb|EFI53103.1| Exodeoxyribonuclease I [Afipia sp. 1NLS2] Length = 473 Score = 44.2 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNR 42 + FD ETTGL D+I+ A+ + ++ R Sbjct: 6 FVFFDTETTGLKHGFDQIVHFAAIRTDANLNEIGR 40 >gi|261248373|emb|CBG26210.1| exonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 189 Score = 44.2 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 8/143 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL + I+EI ++ + P + E + +HGIT+E Sbjct: 15 FLFIDTETTGLGAD-AEIVEICIIDSHGSIM----LNTLIKP-TKSIPDEEIAIHGITNE 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+++ I + F +NA +D+ I + + ++ S Sbjct: 69 MVAFAPAWTDICRTLEELFMRFGFV--IYNADYDIRLIKQTYALHGQSSVAAPYMLAYNS 126 Query: 129 IARRKHPSSRNDLNSLCKRYGIT 151 + + D K Y Sbjct: 127 VCAMMLYAEYRDEPGKYKGYKWH 149 >gi|18496941|ref|NP_569791.1| hypothetical protein TM4_gp57 [Mycobacterium phage TM4] gi|4336092|gb|AAD17623.1| gp57 [Mycobacterium phage TM4] Length = 177 Score = 44.2 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 58/170 (34%), Gaps = 11/170 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV--FL-CPNGRKNSPEALKLHGIT 66 +V D ETTGL I+E+ AV + T F+ + P A++++ Sbjct: 6 VVVDCETTGL-HDGAAILEVAAVNID----TGAELHFVPFVTREQLAQAQPMAMQMNRYY 60 Query: 67 DEFLKDKPSFSSIFSEFWDFF--NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + + + + N FD + A + + + Sbjct: 61 ERGIWQRRLSPDSTDAAYWKLANMLAGNTFGGSNPAFDSRLLAAAMPDGAPEWHHRLADL 120 Query: 125 DTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + P L+++C+R G+T+S R A + ++ Sbjct: 121 AAFTAGKLNLDPVELPGLDAVCERLGVTVSDRHSALADAHATATCFTILR 170 >gi|224824186|ref|ZP_03697294.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum 2002] gi|224603605|gb|EEG09780.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum 2002] Length = 181 Score = 44.2 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 15/25 (60%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD 36 D+E TGL+ +DRIIEI V Sbjct: 11 LDMEMTGLNPDSDRIIEIAVVVTDG 35 >gi|300940651|ref|ZP_07155212.1| exonuclease [Escherichia coli MS 21-1] gi|300454539|gb|EFK18032.1| exonuclease [Escherichia coli MS 21-1] Length = 199 Score = 44.2 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 19 MSANENNLIWIDLEMTGLDPERDRIIEIA 47 >gi|227886794|ref|ZP_04004599.1| exoribonuclease II [Escherichia coli 83972] gi|300816535|ref|ZP_07096756.1| exonuclease [Escherichia coli MS 107-1] gi|300821256|ref|ZP_07101404.1| exonuclease [Escherichia coli MS 119-7] gi|300899700|ref|ZP_07117927.1| exonuclease [Escherichia coli MS 198-1] gi|300905993|ref|ZP_07123717.1| exonuclease [Escherichia coli MS 84-1] gi|300922430|ref|ZP_07138550.1| exonuclease [Escherichia coli MS 182-1] gi|300929272|ref|ZP_07144748.1| exonuclease [Escherichia coli MS 187-1] gi|300974947|ref|ZP_07172786.1| exonuclease [Escherichia coli MS 45-1] gi|300975250|ref|ZP_07172914.1| exonuclease [Escherichia coli MS 200-1] gi|301047612|ref|ZP_07194678.1| exonuclease [Escherichia coli MS 185-1] gi|301302580|ref|ZP_07208710.1| exonuclease [Escherichia coli MS 124-1] gi|301325927|ref|ZP_07219348.1| exonuclease [Escherichia coli MS 78-1] gi|301646609|ref|ZP_07246475.1| exonuclease [Escherichia coli MS 146-1] gi|309796975|ref|ZP_07691375.1| exonuclease [Escherichia coli MS 145-7] gi|227836136|gb|EEJ46602.1| exoribonuclease II [Escherichia coli 83972] gi|281181261|dbj|BAI57591.1| oligoribonuclease [Escherichia coli SE15] gi|300300491|gb|EFJ56876.1| exonuclease [Escherichia coli MS 185-1] gi|300308749|gb|EFJ63269.1| exonuclease [Escherichia coli MS 200-1] gi|300356743|gb|EFJ72613.1| exonuclease [Escherichia coli MS 198-1] gi|300402160|gb|EFJ85698.1| exonuclease [Escherichia coli MS 84-1] gi|300410435|gb|EFJ93973.1| exonuclease [Escherichia coli MS 45-1] gi|300421249|gb|EFK04560.1| exonuclease [Escherichia coli MS 182-1] gi|300462765|gb|EFK26258.1| exonuclease [Escherichia coli MS 187-1] gi|300526145|gb|EFK47214.1| exonuclease [Escherichia coli MS 119-7] gi|300530765|gb|EFK51827.1| exonuclease [Escherichia coli MS 107-1] gi|300842105|gb|EFK69865.1| exonuclease [Escherichia coli MS 124-1] gi|300847280|gb|EFK75040.1| exonuclease [Escherichia coli MS 78-1] gi|301075156|gb|EFK89962.1| exonuclease [Escherichia coli MS 146-1] gi|308119388|gb|EFO56650.1| exonuclease [Escherichia coli MS 145-7] gi|315255507|gb|EFU35475.1| exonuclease [Escherichia coli MS 85-1] gi|315288511|gb|EFU47909.1| exonuclease [Escherichia coli MS 110-3] gi|315294059|gb|EFU53411.1| exonuclease [Escherichia coli MS 153-1] gi|315297605|gb|EFU56882.1| exonuclease [Escherichia coli MS 16-3] gi|324008605|gb|EGB77824.1| exonuclease [Escherichia coli MS 57-2] gi|324019342|gb|EGB88561.1| exonuclease [Escherichia coli MS 117-3] Length = 199 Score = 44.2 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 19 MSANENNLIWIDLEMTGLDPERDRIIEIA 47 >gi|300957822|ref|ZP_07170001.1| exonuclease [Escherichia coli MS 175-1] gi|300315482|gb|EFJ65266.1| exonuclease [Escherichia coli MS 175-1] Length = 199 Score = 44.2 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 19 MSANENNLIWIDLEMTGLDPERDRIIEIA 47 >gi|226355452|ref|YP_002785192.1| DNA polymerase III subunit [Deinococcus deserti VCD115] gi|226317442|gb|ACO45438.1| putative DNA-directed DNA polymerase (DNA polymerase III, subunit) [Deinococcus deserti VCD115] Length = 204 Score = 44.2 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 72/166 (43%), Gaps = 6/166 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D E+TG++ +D +I++G L + + ++ P R + + +HG++ E Sbjct: 14 VALDFESTGMNPAHDEVIQVGLAPLDAGAVDLGGAWAQWVRP-TRPFRADTVAIHGLSYE 72 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ P+ S++ E +AH A ++GF+ R + Sbjct: 73 LLQEAPAISTVRLELGARLQG--RVLVAHYAALELGFLKRWGLRPAATLDTLMLALALDR 130 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L++L +R+G+ + H AL D+ + + V++ + Sbjct: 131 QSTATARRDAYTLSALARRFGVEVYGE--HDALADALITAQVFLVL 174 >gi|313896094|ref|ZP_07829648.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430] gi|320529365|ref|ZP_08030453.1| exonuclease [Selenomonas artemidis F0399] gi|312975519|gb|EFR40980.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430] gi|320138331|gb|EFW30225.1| exonuclease [Selenomonas artemidis F0399] Length = 179 Score = 44.2 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 8/170 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +VFD ETTG S D ++ + V+ + + + P +K P+A K++ I+ Sbjct: 4 KILVFDTETTGFRSD-DEVLTLAVVDGAGKTVVDGMYA----PVSKKEWPDAEKVNRISP 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV---GFINAELQRINKDPLDPSRII 124 + D + +E FN+ + +N +FD+ G + N+ + + Sbjct: 59 AMVADCAPILTHRAELERLFNDPETLLVGYNIEFDIRLLGQSGIRITNPNRHDVMLAFSE 118 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R+ L + Y HGAL D+ Y +M Sbjct: 119 MRKVPDARRGGYRWWKLTECAEYYRYNWGTTEAHGALADTLATLYCYDQM 168 >gi|270158079|ref|ZP_06186736.1| oligoribonuclease [Legionella longbeachae D-4968] gi|289163655|ref|YP_003453793.1| oligoribonuclease [Legionella longbeachae NSW150] gi|269990104|gb|EEZ96358.1| oligoribonuclease [Legionella longbeachae D-4968] gi|288856828|emb|CBJ10639.1| oligoribonuclease [Legionella longbeachae NSW150] Length = 185 Score = 44.2 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 KN I D+E TGL+ + DRIIE+ V Sbjct: 2 KNNQNLIWIDLEMTGLNPEQDRIIELATV 30 >gi|227541256|ref|ZP_03971305.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227182972|gb|EEI63944.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 1246 Score = 44.2 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 8/170 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V +++T+G+ + DRIIEIG V K T+ + P + S +HGI++ Sbjct: 849 FAVLNVKTSGIS-ERDRIIEIGIVLATLNGKVEGTYTTLINP---RRSFSDSAIHGISER 904 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P F + + + IAH+A F + E R N + + T+S Sbjct: 905 MTVATPVFEEVADDIAELL--DRRILIAHDAPFVSKQLGREFSRSNVKAIHLNDGYCTMS 962 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + + SS L+S G+ H AL D+ +++ ++ G Sbjct: 963 HSPKLLGSSGRSLSSALDAAGLKNEHSHC--ALDDAMATANLLNVLLHKG 1010 >gi|81248005|gb|ABB68713.1| conserved hypothetical protein [Shigella boydii Sb227] Length = 204 Score = 44.2 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 24 MSANENNLIWIDLEMTGLDPERDRIIEIA 52 >gi|262067765|ref|ZP_06027377.1| putative exonuclease [Fusobacterium periodonticum ATCC 33693] gi|291378491|gb|EFE86009.1| putative exonuclease [Fusobacterium periodonticum ATCC 33693] Length = 191 Score = 44.2 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 66/192 (34%), Gaps = 22/192 (11%) Query: 7 MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-----------NGRK 54 M KI+F D ET G++ + +I++ + +D + F ++ P + Sbjct: 1 MNKIIFIDTETGGVNPEKATLIQLSGIIRIDKKDVEK-FNFYIKPFKNSEVNEKALEVQG 59 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 + E LK +E K + + + +N +FDV + A QR Sbjct: 60 RTLEELKTDKYVEEKEVYKQFINLLDKYIDKYDRTDKFIVAGYNVRFDVDILKAFFQRHG 119 Query: 115 KDPLDPS---------RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 + L I L IA N L + CK +GI + + + Sbjct: 120 NNFLFSYLDSSMLDPLYSIRLLQIAEILPVLENNKLETWCKHFGIELKAHDSLENIEATK 179 Query: 166 LLSDVYIKMMVG 177 L I ++ Sbjct: 180 KLIGKLISLIRK 191 >gi|241763009|ref|ZP_04761071.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] gi|241367961|gb|EER62180.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] Length = 179 Score = 44.2 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 11/173 (6%) Query: 7 MR--KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA----- 59 MR I D+ET+G ++ +GA + D +TF V + P R PEA Sbjct: 1 MREHYISVDVETSGPIPGEFSMLSLGASVVDDD---GKTFHVQIKPLNRNAVPEALAVTG 57 Query: 60 -LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + N ++ NA FD F+N R Sbjct: 58 LSLETLECHGTEPAIAMENFASWLEGVRPNGIKPVFVGLNAPFDWSFVNYYFVRFCGSNP 117 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +D ++ + + S + + H AL D+ ++++ Sbjct: 118 FGYTALDIKAMYMGATGCTWSQTTSSQMAKRLLPKRKGTHNALDDALYQAELF 170 >gi|194468196|ref|ZP_03074182.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri 100-23] gi|194453049|gb|EDX41947.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri 100-23] Length = 178 Score = 44.2 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 7/181 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + K + + + F + P+ + ++HGI Sbjct: 1 MNFIAMDFET--ANGKRYSACSLALTIVRNGQ-IADEFYTLINPHTKFF-WRNTQIHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +++ P F E + F + IAHN +FD + L+ N + + Sbjct: 57 ERDVQNAPDF-PEVWEHINQFYTPDKLVIAHNNRFDNSVLRNTLEHYNIEVPAYQTLDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 S + + LN++C I H + A +++L Q Sbjct: 116 ASSRQLIPGLTNYKLNTVCDALNIDLHHHHNALDDAQACANILLYQSKHFTPQQIQPFIN 175 Query: 185 F 185 Sbjct: 176 L 176 >gi|148543638|ref|YP_001271008.1| exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri DSM 20016] gi|184153052|ref|YP_001841393.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112] gi|227363391|ref|ZP_03847517.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3] gi|227545077|ref|ZP_03975126.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A] gi|300909253|ref|ZP_07126714.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri SD2112] gi|325682001|ref|ZP_08161519.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri MM4-1A] gi|148530672|gb|ABQ82671.1| Exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri DSM 20016] gi|183224396|dbj|BAG24913.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112] gi|227071580|gb|EEI09877.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3] gi|227184926|gb|EEI64997.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A] gi|300893118|gb|EFK86477.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri SD2112] gi|324978645|gb|EGC15594.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri MM4-1A] Length = 179 Score = 44.2 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 7/182 (3%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M I D ET + K + + + F + P+ + ++HGI Sbjct: 1 MMNFIAMDFET--ANGKRYSACSLALTIVRNGQ-IADEFYTLINPHTKFF-WRNTQIHGI 56 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +++ P F E + F + IAHN +FD + L+ N + + Sbjct: 57 HERDVQNAPDF-PEVWEHINQFYTPDKLVIAHNNRFDNSVLRNTLEHYNIEVPAYQTLDT 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 S + + LN++C I H + A +++L Q Sbjct: 116 VASSRQLIPGLTNYKLNTVCDALNIDLHHHHNALDDAQACANILLYQSKHFTPQQIQPFI 175 Query: 184 GF 185 Sbjct: 176 NL 177 >gi|28377661|ref|NP_784553.1| DNA-directed DNA polymerase III, epsilon chain (putative) [Lactobacillus plantarum WCFS1] gi|254555842|ref|YP_003062259.1| DNA-directed DNA polymerase III, epsilon chain (putative) [Lactobacillus plantarum JDM1] gi|28270494|emb|CAD63396.1| DNA-directed DNA polymerase III, epsilon chain (putative) [Lactobacillus plantarum WCFS1] gi|254044769|gb|ACT61562.1| DNA-directed DNA polymerase III, epsilon chain (putative) [Lactobacillus plantarum JDM1] Length = 173 Score = 44.2 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 7/160 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D ET ++K D + + + ++ F + P +++HGI + + D Sbjct: 2 DFET--ANAKRDSACSLALTVVRNNQISDE-FYTLIKPES-DFFWRNVQIHGIHEADVAD 57 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P F + + F +++ IAHNA FD+G + L + + + R Sbjct: 58 APKF-PDVWQHIEPFFQRDRLVIAHNAPFDIGVLRNTLAHYGISAPEYLSMDTVKTSQRF 116 Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + L+++C+ I + H H AL DS +++ + Sbjct: 117 YPELPNHKLDTVCQALDIDLQH--HHNALDDSLACANILL 154 >gi|315636786|ref|ZP_07892012.1| DNA polymerase III epsilon subunit [Arcobacter butzleri JV22] gi|315478912|gb|EFU69619.1| DNA polymerase III epsilon subunit [Arcobacter butzleri JV22] Length = 272 Score = 44.2 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 9/196 (4%) Query: 11 VFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 DIET G K +IIE+GAV+ + + +F + ++ P ++ IT Sbjct: 85 FVDIETNGGTPKKGFQIIELGAVKYKNG-EVLDSFNSLV--FAKEIPPYIQEVTKITPAM 141 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ P + +F +F + +IAH+ KFD FI+ ++ + L +R + T+ + Sbjct: 142 LETAPRIEKVLKDFKEFLGD--DVFIAHDIKFDYNFISDSFEKYSLGKL-LNRKLCTIDL 198 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 A+R S + L+SL + I I + H A D+ V+ K + + Sbjct: 199 AKRTIKSEKYGLSSLKELLNIDI--ENHHRAYYDALTTQIVFEKCLKNIDTNKIKTVEDL 256 Query: 190 DRFFKEEKKTVPNISL 205 F K + I Sbjct: 257 INFSKSDSIIKNEIKR 272 >gi|254457146|ref|ZP_05070574.1| exonuclease [Campylobacterales bacterium GD 1] gi|207085938|gb|EDZ63222.1| exonuclease [Campylobacterales bacterium GD 1] Length = 247 Score = 44.2 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 7/113 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + ++ D ETTG+ +NDR+I++G V L + + F + S A+++HGIT Sbjct: 4 KYVILDTETTGVG-ENDRVIQLGYVVLGAKDVEVHNEFYS----SDVPISFGAMEVHGIT 58 Query: 67 DEFLKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + L++KP+ + N I HNA FD+G + E + Sbjct: 59 PDMLENKPACRDSVAYKRLCELNVSENYMIIHNAPFDLGMLEKEGFNTQMKVI 111 >gi|194449117|ref|YP_002047241.1| exonuclease [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194407421|gb|ACF67640.1| exonuclease [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 198 Score = 44.2 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 53/174 (30%), Gaps = 14/174 (8%) Query: 11 VFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D ETTGL D I+EI ++ + + P + EA+ +HGIT+E Sbjct: 26 FIDTETTGL---GDDAEIVEICIIDSHGFIL----LNTLVKP-TKPIPDEAIAIHGITNE 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+++ I + +NA +D+ I + ++ Sbjct: 78 MVAYAPAWTDICGAVEELIRRFGFV--IYNADYDLRLIRQTYALNGRPSEGAPWMLAA-- 133 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + K +G A + + + + Sbjct: 134 HSVCAMKLYAEYRGEPGKYHGYKWHKLVDAAAHEGVVIEGKAHRALADCKMTLG 187 >gi|299066912|emb|CBJ38107.1| oligoribonuclease [Ralstonia solanacearum CMR15] Length = 219 Score = 44.2 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL +NDRIIE+ V Sbjct: 33 LDMEMTGLSPENDRIIEVAMV 53 >gi|213022870|ref|ZP_03337317.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 43 Score = 44.2 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 10/23 (43%), Positives = 17/23 (73%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV 32 +V D+ET G ++K D ++EI A+ Sbjct: 20 VVIDVETAGFNAKTDALLEIAAI 42 >gi|77164160|ref|YP_342685.1| exonuclease [Nitrosococcus oceani ATCC 19707] gi|254435603|ref|ZP_05049110.1| exonuclease superfamily [Nitrosococcus oceani AFC27] gi|76882474|gb|ABA57155.1| Exonuclease [Nitrosococcus oceani ATCC 19707] gi|207088714|gb|EDZ65986.1| exonuclease superfamily [Nitrosococcus oceani AFC27] Length = 205 Score = 44.2 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 10/144 (6%) Query: 9 KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 IV D ETTGL +N I+ +G + + + + + P R S EA +HGIT Sbjct: 16 YIVLDTETTGLPDENGLPDIVTLGITVVSNR-EIAESVEFKTRPQKR-ISEEAQSIHGIT 73 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ SF S + + ++ ++ + HNA FD + + R I Sbjct: 74 NKQAAAFDSFDSQWQQISEYL--KHQLIVIHNASFDWPILLDHVLRHGLAMP----EIQG 127 Query: 127 LSIARRKHPSSRNDLNSLCKRYGI 150 + +++ ++ C G Sbjct: 128 VFCSQKAAIPWAQAMDLPCSHRGP 151 >gi|328865534|gb|EGG13920.1| hypothetical protein DFA_11681 [Dictyostelium fasciculatum] Length = 383 Score = 44.2 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 43/146 (29%), Gaps = 11/146 (7%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI---- 65 FD ETTGL S +IIE+ + + D +F + P K Sbjct: 83 FFDTETTGLATSTTSQIIELSLINIKD----GDSFYRKVNPTIPIEDGATKKHGMTNQSL 138 Query: 66 --TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + +P ++ +AHN KFD + + + L Sbjct: 139 AGHPYWEDVEPELIQFLDKYCVGDTPVEIIIVAHNEKFDRHILATRIVKNMVTTLPTLPE 198 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYG 149 I + +R +G Sbjct: 199 IKFVDSINIFKHMARKGFIQTPAAFG 224 >gi|237747031|ref|ZP_04577511.1| oligoribonuclease [Oxalobacter formigenes HOxBLS] gi|229378382|gb|EEO28473.1| oligoribonuclease [Oxalobacter formigenes HOxBLS] Length = 218 Score = 44.2 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Query: 1 MIRK-NKMRKIVFDIETTGLDSKNDRIIEIGAV 32 M ++ N++ I D+E TGLD + DRIIE+ V Sbjct: 36 MKKRPNELNLIWVDLEMTGLDPETDRIIEVALV 68 >gi|157737104|ref|YP_001489787.1| DNA polymerase III subunit epsilon [Arcobacter butzleri RM4018] gi|157698958|gb|ABV67118.1| DNA polymerase III [Arcobacter butzleri RM4018] Length = 272 Score = 44.2 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 9/196 (4%) Query: 11 VFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 DIET G K +IIE+GAV+ + + +F + ++ P ++ IT Sbjct: 85 FVDIETNGGTPKKGFQIIELGAVKYKNG-EVLDSFNSLV--FAKEIPPYIQEVTKITPAM 141 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ P + +F +F + +IAH+ KFD FI+ ++ + L +R + T+ + Sbjct: 142 LETAPRIEKVLKDFKEFLGD--DVFIAHDIKFDYNFISDSFEKYSLGKL-LNRKLCTIDL 198 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 A+R S + L+SL + I I + H A D+ V+ K + + Sbjct: 199 AKRTIKSEKYGLSSLKELLNIDI--ENHHRAYYDALTTQIVFEKCLKNIDTNKIKTVEDL 256 Query: 190 DRFFKEEKKTVPNISL 205 F K + I Sbjct: 257 INFSKSDSIIKNEIKR 272 >gi|319426754|gb|ADV54828.1| Exonuclease RNase T and DNA polymerase III [Shewanella putrefaciens 200] Length = 223 Score = 44.2 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 15/27 (55%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSK 39 D+E TGLD D+I+ IG V + Sbjct: 41 DLEMTGLDPLQDQILSIGLVPIEHGVI 67 >gi|120598470|ref|YP_963044.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. W3-18-1] gi|120558563|gb|ABM24490.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. W3-18-1] Length = 223 Score = 44.2 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 15/27 (55%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSK 39 D+E TGLD D+I+ IG V + Sbjct: 41 DLEMTGLDPLQDQILSIGLVPIEHGVI 67 >gi|146293452|ref|YP_001183876.1| exonuclease, RNase T and DNA polymerase III [Shewanella putrefaciens CN-32] gi|145565142|gb|ABP76077.1| Exonuclease, RNase T and DNA polymerase III [Shewanella putrefaciens CN-32] Length = 223 Score = 44.2 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 15/27 (55%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSK 39 D+E TGLD D+I+ IG V + Sbjct: 41 DLEMTGLDPLQDQILSIGLVPIEHGVI 67 >gi|213861675|ref|ZP_03386145.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 49 Score = 44.2 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 3/48 (6%) Query: 194 KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 +++ + + + K T EE+ H+ + + K +W Sbjct: 1 QQQGEATIQRIVRQASKLRVVFATDEEIAAHEARLDLVQKKGGSCLWR 48 >gi|324015053|gb|EGB84272.1| exonuclease [Escherichia coli MS 60-1] Length = 199 Score = 44.2 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 19 MSANENNLIWIDLEMTGLDPERDRIIEIA 47 >gi|315637226|ref|ZP_07892446.1| exonuclease [Arcobacter butzleri JV22] gi|315478498|gb|EFU69211.1| exonuclease [Arcobacter butzleri JV22] Length = 247 Score = 44.2 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 2/118 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD ETTG ++ DR+I+ GA+ + + K F + D Sbjct: 4 YVLFDTETTGA-AQEDRVIQFGAMIVDNKGKV-EAFDELCSAPIPIKLEAMEVHNITPDL 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + F + + N IAHN FD+ I E + +D R Sbjct: 62 LENKPKAVETNFYKRLEELNSDENYLIAHNINFDLDMIKKEGFENSYKLIDTLRCAKH 119 >gi|227487527|ref|ZP_03917843.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227092509|gb|EEI27821.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 2526 Score = 44.2 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 8/170 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V +++T+G+ + DRIIEIG V K T+ + P + S +HGI++ Sbjct: 2129 FAVLNVKTSGIS-ERDRIIEIGIVLATLNGKVEGTYTTLINP---RRSFSDSAIHGISER 2184 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P F + + + IAH+A F + E R N + + T+S Sbjct: 2185 MTVAAPVFEEVADDIAELL--DRRILIAHDAPFVSKQLGREFSRSNVKAIHLNDGYCTMS 2242 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + + SS L+S G+ H AL D+ +++ ++ G Sbjct: 2243 HSPKLLGSSGRSLSSALDAAGLKNEHSHC--ALDDAMATANLLNVLLHKG 2290 >gi|301066020|ref|YP_003788043.1| DNA polymerase III subunit epsilon [Lactobacillus casei str. Zhang] gi|300438427|gb|ADK18193.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus casei str. Zhang] Length = 180 Score = 44.2 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 5/101 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + K + V + +F + P + + + +HGIT Sbjct: 1 MDFIAMDFET--ANRKRASACSLALVVVQQNKVV-DSFYTLINPQMQ-FDAQNIHIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 E ++D+P+F F AHNA FDV + Sbjct: 57 PEMVQDQPTF-DQVWPHIQMFYTPGRIVTAHNAPFDVSVMR 96 >gi|116671305|ref|YP_832238.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24] gi|116611414|gb|ABK04138.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24] Length = 254 Score = 44.2 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 65/205 (31%), Gaps = 5/205 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD+ETTG +S+ RI+ + + P G + EA ++HG+T E Sbjct: 29 AFDLETTGRNSRAARIVTASVTVVDADGSVITEHEWLADP-GIEIPAEASEVHGVTTERA 87 Query: 71 KDKPSFSSIFSEF----WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + ++ + + IA NA +D + AE R L+ ++D Sbjct: 88 RLEGRPAAEVTRELASVLQGLFDDGIPVIAFNASYDFTVLAAESARYGIPQLNRFPVLDP 147 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + ++ + ++ + H + D+ + M ++ Sbjct: 148 YIMNKQVDRFRKGKRTLTALCEEYKVNLDNAHTSAADALATLRMLDAMAGKFPKLRMAAG 207 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211 + R Sbjct: 208 QLHQLQVGWAASQAADFQTYLRKTK 232 >gi|289705138|ref|ZP_06501542.1| exonuclease [Micrococcus luteus SK58] gi|289558166|gb|EFD51453.1| exonuclease [Micrococcus luteus SK58] Length = 228 Score = 44.2 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 69/202 (34%), Gaps = 3/202 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG D + I+ V + ++ + + + + P + A T+ Sbjct: 11 FDLETTGRDPRTALIVTATLVMVDEHGRAASSAEWLVDPGVPIPAEAAEVHGVTTERAQA 70 Query: 72 DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +E + + +A N +D ++ E +R PL+ +ID Sbjct: 71 EGMPAAQGVAEITETLRDLFAAGIPVVAFNGVYDFTVMDREARRHGLTPLEARPVIDPFV 130 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + ++ + ++ + H + D+ V + Q+ Sbjct: 131 LDKQVDRFRKGKRTLSAVSEHYGVTLENAHTSAADALAAVQVADALAAQYEQLRMAPADL 190 Query: 189 EDRFFKEEKKTVPNISLLKRDK 210 +R + + + + R K Sbjct: 191 HERQVRWKAEQAESFEQYLRRK 212 >gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] Length = 597 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%) Query: 8 RKIVFDIETTGLDSKNDRI--IEIGA 31 R I D ETTGLD +RI I+I A Sbjct: 35 RVIGIDTETTGLDPLTERIRLIQIAA 60 >gi|297622496|ref|YP_003703930.1| exonuclease RNase T and DNA polymerase III [Truepera radiovictrix DSM 17093] gi|297163676|gb|ADI13387.1| Exonuclease RNase T and DNA polymerase III [Truepera radiovictrix DSM 17093] Length = 224 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 16/31 (51%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39 + D+ETTGL + D + +G V + + Sbjct: 42 YVAVDLETTGLRPRWDAPLSVGWVLVRAGAI 72 >gi|256784395|ref|ZP_05522826.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|289768274|ref|ZP_06527652.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|289698473|gb|EFD65902.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] Length = 244 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 FD+ETTG D + RI+ +E++ R + P Sbjct: 11 FDLETTGTDPREARIVTGAVIEVMGSEPLGRR-EWLADPG 49 >gi|212710150|ref|ZP_03318278.1| hypothetical protein PROVALCAL_01204 [Providencia alcalifaciens DSM 30120] gi|212687149|gb|EEB46677.1| hypothetical protein PROVALCAL_01204 [Providencia alcalifaciens DSM 30120] Length = 180 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 15/29 (51%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 ++KN+ I D+E TGLD DRIIEI Sbjct: 1 MQKNENNLIWIDLEMTGLDPIRDRIIEIA 29 >gi|116494505|ref|YP_806239.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus casei ATCC 334] gi|227535524|ref|ZP_03965573.1| DNA-directed DNA polymerase III [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631264|ref|ZP_04674295.1| DNA polymerase III alpha chain protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116104655|gb|ABJ69797.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus casei ATCC 334] gi|227186846|gb|EEI66913.1| DNA-directed DNA polymerase III [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525729|gb|EEQ64730.1| DNA polymerase III alpha chain protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 180 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 61/167 (36%), Gaps = 7/167 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + K + V + +F + P + + + +HGIT Sbjct: 1 MDFIAMDFET--ANRKRASACSLALVVVQQNKVV-DSFYTLINPQMQ-FDAQNIHIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++D+P+F F AHNA FDV + L R I Sbjct: 57 PEMVQDQPTF-DQVWPHIQMFYTPGRIVTAHNAPFDVSVMRLTLDRYGIAAPRYQVIDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + + L+++ I + H H AL DS+ + + I Sbjct: 116 KTSRQFLPKLPNHRLDTVSAALHIPLEH--HHNALADSYACARILIA 160 >gi|157120016|ref|XP_001653489.1| oligoribonuclease, mitochondrial [Aedes aegypti] gi|108875103|gb|EAT39328.1| oligoribonuclease, mitochondrial [Aedes aegypti] Length = 210 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 9/151 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70 D+E TGL+ + DRI+EI V TN+ ++ P+ + PE + Sbjct: 39 IDLEMTGLEVEKDRILEIACV------ITNKNLEILERGPDIVIHEPEEVLNAMNEWCQT 92 Query: 71 KDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++ D + I D + R + L+ Sbjct: 93 NHSKTGLIQAVRESKIDLQKAEQMVLDFVKKYCPEKACPLAGNTIYMDRMFLYRYMPQLN 152 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 + + LCKR+ + Sbjct: 153 EYLHYRIIDVSTVKELCKRWNGAVFSNCPPK 183 >gi|167522769|ref|XP_001745722.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776071|gb|EDQ89693.1| predicted protein [Monosiga brevicollis MX1] Length = 320 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 50/153 (32%), Gaps = 5/153 (3%) Query: 11 VFDIETTG---LDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKN-SPEALKLHGI 65 V D E T IIEI A+ L + TFQ ++ P S L GI Sbjct: 103 VMDFEATCEEERSPFPHEIIEIPAILLDAKSGELLDTFQTYVRPKLNPQLSKFCTNLTGI 162 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + + F + +F DF + ++ A + DV + A + + Sbjct: 163 TQDQVDAAKLFPEAWQDFEDFLGKAVQKFKASHDVDDVRVLCASDGPWDFRDFLAFQCQL 222 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158 + + L K + + + + Sbjct: 223 SQMDYPAVCQQWMDVRKRLTKHFKLKWAGPERA 255 >gi|330983214|gb|EGH81317.1| ribonuclease T [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 171 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34 +V D+ET G +S D ++EI AV + Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTI 57 >gi|330937561|gb|EGH41501.1| ribonuclease T [Pseudomonas syringae pv. pisi str. 1704B] Length = 163 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34 +V D+ET G +S D ++EI AV + Sbjct: 32 VVVDVETGGFNSATDALLEIAAVTI 56 >gi|330898573|gb|EGH29992.1| ribonuclease T [Pseudomonas syringae pv. japonica str. M301072PT] Length = 186 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34 +V D+ET G +S D ++EI AV + Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTI 57 >gi|325275194|ref|ZP_08141161.1| ribonuclease T [Pseudomonas sp. TJI-51] gi|324099681|gb|EGB97560.1| ribonuclease T [Pseudomonas sp. TJI-51] Length = 224 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34 +V D+ET G +S D ++EI AV + Sbjct: 32 VVVDVETGGFNSATDALLEIAAVTI 56 >gi|227499152|ref|ZP_03929287.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904599|gb|EEH90517.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 228 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 61/174 (35%), Gaps = 6/174 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+E G D IIEI A+++ + F+ + P K S ++ GIT + Sbjct: 56 VVFDLELAG--YAEDDIIEIAAIKVDFLGRQTAVFRELIRP-RTKISKRVTEMTGITRDM 112 Query: 70 LKDKPSFSSIFSEFWDFFN--EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +KDKP + F+ F I +N + P L Sbjct: 113 VKDKPQLPEVLKRFFAFVEGSAVMGHDIGYNDIMAINLACRRYGMKAFRPPFLDTSRLIL 172 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL-DSHLLSDVYIKMMVGGSQ 180 R+ + L +L + I I + A + LL + K + Sbjct: 173 RHLSREAVGGKTGLAALLAHFNIPIHRHHEALADCEATLLLYEAVAKEIRKQKS 226 >gi|167035320|ref|YP_001670551.1| ribonuclease T [Pseudomonas putida GB-1] gi|166861808|gb|ABZ00216.1| ribonuclease T [Pseudomonas putida GB-1] Length = 224 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34 +V D+ET G +S D ++EI AV + Sbjct: 32 VVVDVETGGFNSATDALLEIAAVTI 56 >gi|170720300|ref|YP_001747988.1| ribonuclease T [Pseudomonas putida W619] gi|169758303|gb|ACA71619.1| ribonuclease T [Pseudomonas putida W619] Length = 224 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34 +V D+ET G +S D ++EI AV + Sbjct: 32 VVVDVETGGFNSATDALLEIAAVTI 56 >gi|104780415|ref|YP_606913.1| ribonuclease T [Pseudomonas entomophila L48] gi|166200016|sp|Q1IE06|RNT_PSEE4 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|95109402|emb|CAK14102.1| ribonuclease T [Pseudomonas entomophila L48] Length = 224 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34 +V D+ET G +S D ++EI AV + Sbjct: 32 VVVDVETGGFNSATDALLEIAAVTI 56 >gi|158317483|ref|YP_001509991.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec] gi|158112888|gb|ABW15085.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec] Length = 237 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 5/43 (11%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPN 51 V D ETTG D + DR +++ +++ T + P Sbjct: 10 VLDFETTGTDVETDRAVQVALLKV---GPTGVLNQLCQIIDPG 49 >gi|317493562|ref|ZP_07951983.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918505|gb|EFV39843.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA] Length = 181 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ + DRIIEI Sbjct: 11 IDLEMTGLNPEVDRIIEIA 29 >gi|296137636|ref|YP_003644877.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia K12] gi|295797758|gb|ADG32547.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia K12] Length = 179 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 6/96 (6%) Query: 11 VFDIETT-----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64 V D+E T GL + + IIEIGAV TFQ + P R +P +L Sbjct: 7 VIDLEATCDDADGLPASDMEIIEIGAVWATVEGSVLDTFQALVRPVVRPQLTPFCRQLTN 66 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK 100 I + F ++ + F A + Sbjct: 67 IQQADVDGAELFPAVAARLASFAQRHQAPGATWGSW 102 >gi|167957555|ref|ZP_02544629.1| oligoribonuclease [candidate division TM7 single-cell isolate TM7c] Length = 182 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 D+E TGLD D+I+E+ A+ D+++ R F+ + + S H Sbjct: 9 VDLEMTGLDPTKDKILEVAAIATDWDFNEVGR-FESAVKVDDSLISARFKAGHNFW 63 >gi|170722729|ref|YP_001750417.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida W619] gi|169760732|gb|ACA74048.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida W619] Length = 181 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 50/171 (29%), Gaps = 8/171 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR----KNSPEAL 60 +V D+E TT G IIEIGA + + FQ F+ P R E Sbjct: 4 WLVIDLEATTDDGGWPVTEMEIIEIGASLVTREGREVDHFQRFVRPRRRPQLTPFCRELT 63 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + + P + F + Q W++ + Q L Sbjct: 64 HISQANVDSAAPFPEVWARFERWLGHHRGQLQAWVSWGDYDRQQLLQEWQQHELDSLLRN 123 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I+ + R + + +H AL D+ + + Sbjct: 124 LPHINLKQRFAKARHLQRPTGLNGALQLAGMHFCGQQHRALEDARNTARLL 174 >gi|91079959|ref|XP_969470.1| PREDICTED: similar to three prime repair exonuclease 1 [Tribolium castaneum] gi|270003252|gb|EEZ99699.1| hypothetical protein TcasGA2_TC002459 [Tribolium castaneum] Length = 319 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 24/97 (24%), Gaps = 10/97 (10%) Query: 9 KIVFDIETTGLDSKND---RIIEIGAVELL-DYSKTN------RTFQVFLCPNGRKNSPE 58 + D+ETTGL RI E+ AV + D+ + + P + Sbjct: 34 FVFLDLETTGLPHLEHNKTRITELCAVSVRADHIELGCFPRVQNKLSLCFNPMKMISPEA 93 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI 95 D S + Sbjct: 94 TSLTGLSNDLLEYQASFSSDAVDVIRKWLEMNQKPIC 130 >gi|167461432|ref|ZP_02326521.1| hypothetical protein Plarl_02538 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 119 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 6/89 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++ D ETTG++ + I++I ++L F + P EA +HGIT+ Sbjct: 33 KYLILDTETTGIEYDS-EIVDIAIIDLDKNLI----FASLVKP-ICPIPEEATMIHGITN 86 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96 E + D PS+ ++++ + + Sbjct: 87 EMVADAPSWLEVWAQVQKLLSGKTLLIYN 115 >gi|157737501|ref|YP_001490184.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018] gi|157699355|gb|ABV67515.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018] Length = 247 Score = 44.2 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 2/118 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD ETTG ++ DR+I+ GA+ + + K F + D Sbjct: 4 YVLFDTETTGA-AQEDRVIQFGAMIVDNKGKV-EAFDELCSAPIPIKLEAMEVHNITPDL 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + F + + N IAHN FD+ I E + +D R Sbjct: 62 LENKPKAVETNFYKRLEELNSDENYLIAHNINFDLDMIKKEGFENSYKLIDTLRCAKH 119 >gi|283955874|ref|ZP_06373364.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 1336] gi|283792534|gb|EFC31313.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 1336] Length = 253 Score = 44.2 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 + DIE+TG I+EIGAV++ + + R FQ F+ Sbjct: 74 IVDIESTGG-VSKGEILEIGAVKIQNSKEIGR-FQSFVK 110 >gi|257454146|ref|ZP_05619419.1| DNA polymerase III subunit epsilon [Enhydrobacter aerosaccus SK60] gi|257448474|gb|EEV23444.1| DNA polymerase III subunit epsilon [Enhydrobacter aerosaccus SK60] Length = 215 Score = 44.2 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 60/173 (34%), Gaps = 6/173 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTN-RTFQVFLCPNGRKNSPEALKLHG 64 + D+E TGL++K D I+ +GAV++ + + + +C + + + +HG Sbjct: 41 WVSLDLEMTGLNAKQDYILSVGAVQVRKESNGFVIDTDSALSLVCRPPVMPTHDTIVIHG 100 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRI 123 + + + S+ + ++ + + I + Sbjct: 101 LRPIDVDNGLSYDEMLTQLLPMLKNRPIIGFCVDMDMAFLNAIAKPFLGVELANKLVDVS 160 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKMM 175 R PS L L + R H AL D+ + + ++ +M Sbjct: 161 RLYQQNQHRHDPSQVGQLPHLNQLLEEYQIPRLPAHNALNDAIMTAMLFTHLM 213 >gi|257095291|ref|YP_003168932.1| Exonuclease RNase T and DNA polymerase III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047815|gb|ACV37003.1| Exonuclease RNase T and DNA polymerase III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 236 Score = 44.2 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 5/41 (12%) Query: 8 RKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKT-NRTFQ 45 R +V D+ETT G D+ DR++ +GA+ ++D FQ Sbjct: 45 RYVVVDVETTVIGGDA--DRLVSLGALAVVDGLIDFKDVFQ 83 >gi|319786534|ref|YP_004146009.1| ribonuclease T [Pseudoxanthomonas suwonensis 11-1] gi|317465046|gb|ADV26778.1| ribonuclease T [Pseudoxanthomonas suwonensis 11-1] Length = 219 Score = 44.2 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 57/185 (30%), Gaps = 13/185 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRT--FQVFLCPNGRKNSPEALKLH 63 +V D+ET G D ++E+ AV + +T P + Sbjct: 32 VVVDVETGGFDWNRHALLEMAAVPIEMDEQGLLVPGKTAAAHFIPAPGTEIDPKSLEVTG 91 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAELQRINKD 116 + D + ++ Q A + HNA FD+ F+NA + R Sbjct: 92 IVLDHPFRLAKPERDALGHVFNQVRAAVRRNGCQRAILVGHNAHFDLNFVNAAVARSGHK 151 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ + L + G+ R H A+ D+ + ++ ++ Sbjct: 152 RNPFHPFSVFDTVTLGGIAYGQTVLARALQAAGLEWDAREAHSAVYDAEQTAKLFCRIAN 211 Query: 177 GGSQI 181 Sbjct: 212 AWPSP 216 >gi|270676235|ref|ZP_06222692.1| ribonuclease T [Haemophilus influenzae HK1212] gi|270316426|gb|EFA28313.1| ribonuclease T [Haemophilus influenzae HK1212] Length = 164 Score = 44.2 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G D+K D ++E+ A+ L Y ++ + P G +PE+LK +G Sbjct: 11 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 70 Query: 65 ITDEFL 70 I Sbjct: 71 IDIHNP 76 >gi|125547686|gb|EAY93508.1| hypothetical protein OsI_15303 [Oryza sativa Indica Group] Length = 214 Score = 44.2 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 15/28 (53%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK 39 D+E TGLD DRI+EI + + Sbjct: 74 IDLEMTGLDITKDRILEIACIITDGLKE 101 >gi|260577353|ref|ZP_05845324.1| Exodeoxyribonuclease I [Rhodobacter sp. SW2] gi|259020426|gb|EEW23751.1| Exodeoxyribonuclease I [Rhodobacter sp. SW2] Length = 457 Score = 43.8 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 18/157 (11%), Positives = 42/157 (26%), Gaps = 8/157 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR--TFQVFLCPNGRKNSP--EALKL 62 M + +D+ETTG+ D+ ++ A+ D + + P+ + + Sbjct: 1 MGFVFYDLETTGISPAFDQPLQFAAIRTDDSLVEIERVNLRCRIAPHIIPSPQALFVTGV 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + F + A W+ N + + N P + Sbjct: 61 TPAQLVDPELPSLFEFTQTIMELTERWAPATWVGFNTIRFDEEVLRQAFYQNLQPNIYAT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 ++ + C+ G+ Sbjct: 121 QLNGNNRLDILTAVYAV----WCRNRGLMHWPTDDTD 153 >gi|301603560|ref|XP_002931486.1| PREDICTED: ERI1 exoribonuclease 3 [Xenopus (Silurana) tropicalis] Length = 338 Score = 43.8 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 38/162 (23%), Gaps = 6/162 (3%) Query: 9 KIVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +V D E T + IIE ++L + TF ++ P P+ Sbjct: 130 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHTYVQP---VVHPQLTPFCTE 186 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++D S+ + +E A+ + F+ + + Sbjct: 187 LTGIIQDMVDGQPTLSQVLERVDEWMAKEGLLDPSVKSIFVTCGDWDLKLMLPGQCEYLG 246 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 K + + Sbjct: 247 LQVADYFKQWINLKKDVNPSTSSKPPQMEDPFDWKKTTIQST 288 >gi|291517508|emb|CBK71124.1| Oligoribonuclease (3'->5' exoribonuclease) [Bifidobacterium longum subsp. longum F8] Length = 214 Score = 43.8 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 3/132 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D ETTGLD ++E+G ++T + + + P+ +N A + + Sbjct: 29 IDTETTGLDPNQCELLEVGMQVTDLKAETRGDSLHLIVHPDNVRN--WANHPEMLKAYEM 86 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +E + + + + L + R +D Sbjct: 87 HLANGLMLACAEAPKTGYDYKHTALNIHEFLNDQLSQYTLHPAGTNVDFDLRQLDVHLSR 146 Query: 131 RRKHPSSRNDLN 142 +HP ++ + Sbjct: 147 HLEHPITQGLHH 158 >gi|191637943|ref|YP_001987109.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus casei BL23] gi|190712245|emb|CAQ66251.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus casei BL23] gi|327382013|gb|AEA53489.1| hypothetical protein LC2W_1155 [Lactobacillus casei LC2W] gi|327385171|gb|AEA56645.1| hypothetical protein LCBD_1147 [Lactobacillus casei BD-II] Length = 180 Score = 43.8 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 61/167 (36%), Gaps = 7/167 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + K + V + +F + P + + + +HGIT Sbjct: 1 MDFIAMDFET--ANRKRASACSLALVVVQQNKVV-DSFYTLINPQMQ-FDAQNIHIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++D+P+F F AHNA FDV + L R I Sbjct: 57 PEMVQDQPTF-DRVWPHIQMFYTPGRIVTAHNAPFDVSVMRLTLDRYGIAAPRYQVIDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + + L+++ I + H H AL DS+ + + I Sbjct: 116 KTSRQFLPKLPNHRLDTVSAALHIPLEH--HHNALADSYACARILIA 160 >gi|184154853|ref|YP_001843193.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum IFO 3956] gi|260663117|ref|ZP_05864009.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum 28-3-CHN] gi|183226197|dbj|BAG26713.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum IFO 3956] gi|260552309|gb|EEX25360.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum 28-3-CHN] Length = 179 Score = 43.8 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 64/177 (36%), Gaps = 7/177 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET +K + + + F + P ++HGI Sbjct: 1 MNFIAMDFET--ASAKRFSACSLAITIVRNSQ-IQDEFYTLINPQTPFF-WRNTQVHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +KD P+F ++ +F + IAHNA FD + L +P + Sbjct: 57 ERDVKDAPTFPEVWEHIQEF-FTPDKLVIAHNATFDNSVLKNTLLHFEIEPPVYQTLDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + + LN++C + I + H H AL D+H +++ + Sbjct: 116 KTSRQLFPAFPNHKLNTICDQLNIDLHH--HHNALDDAHACANILLYQANHFGTAPL 170 >gi|209963909|ref|YP_002296824.1| 3'-5' exonuclease [Rhodospirillum centenum SW] gi|209957375|gb|ACI98011.1| 3'-5' exonuclease [Rhodospirillum centenum SW] Length = 212 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 5/156 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D ET + + IG + + RT + + P + +P + +HGI E + Sbjct: 9 AIDFET--ANEQRASACSIGLCRVENGRVV-RTAEYLIRPPELRFTPFTIAIHGIRPEDV 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D P F I+ A +AHNA FD+ + A L D + ++ Sbjct: 66 VDAPEFPDIWDAMRPELEG--AVLLAHNASFDMSVLRAMLGTYGLAVPDHGYLCTLVAAR 123 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 R ++ LN L +++GI + H Sbjct: 124 RAWPDLEKHRLNHLARQFGIELEHHRAGSDARACAA 159 >gi|220934199|ref|YP_002513098.1| exonuclease [Thioalkalivibrio sp. HL-EbGR7] gi|219995509|gb|ACL72111.1| exonuclease [Thioalkalivibrio sp. HL-EbGR7] Length = 236 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39 R +V D+ETTGLD ++ +G V + + Sbjct: 41 RFVVIDVETTGLDLSRSELLSVGLVPVGPHGI 72 >gi|241662497|ref|YP_002980857.1| oligoribonuclease [Ralstonia pickettii 12D] gi|309781079|ref|ZP_07675817.1| oligoribonuclease [Ralstonia sp. 5_7_47FAA] gi|240864524|gb|ACS62185.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii 12D] gi|308920145|gb|EFP65804.1| oligoribonuclease [Ralstonia sp. 5_7_47FAA] Length = 215 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL +NDRIIE+ V Sbjct: 29 LDMEMTGLSPENDRIIEVAVV 49 >gi|300692079|ref|YP_003753074.1| oligoribonuclease [Ralstonia solanacearum PSI07] gi|299079139|emb|CBJ51807.1| oligoribonuclease [Ralstonia solanacearum PSI07] Length = 219 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL +NDRIIE+ V Sbjct: 33 LDMEMTGLSPENDRIIEVAVV 53 >gi|218296944|ref|ZP_03497630.1| ATP-dependent DNA helicase, RecQ family [Thermus aquaticus Y51MC23] gi|218242647|gb|EED09183.1| ATP-dependent DNA helicase, RecQ family [Thermus aquaticus Y51MC23] Length = 1684 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 8/70 (11%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGI 65 + D+E T D + I+E+ A RTF +L P + + + Sbjct: 7 FVALDLEATSPDPEEAEILELAA-----QDSQGRTFHRYLATNKPLSKDHEAFRITQIPF 61 Query: 66 TDEFLKDKPS 75 + + P Sbjct: 62 EEYEREKVPP 71 >gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51] gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 578 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%) Query: 1 MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 M + + I D ETTGLD R+I++ A +L F P GR+ Sbjct: 16 MEKLTAAKVIAVDTETTGLDPHTCQLRLIQLAAEDLP--VLVIDCFSFL--PEGRE 67 >gi|17545661|ref|NP_519063.1| oligoribonuclease [Ralstonia solanacearum GMI1000] gi|21263804|sp|Q8Y0V1|ORN_RALSO RecName: Full=Oligoribonuclease gi|17427954|emb|CAD14644.1| probable oligoribonuclease protein [Ralstonia solanacearum GMI1000] Length = 219 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL +NDRIIE+ V Sbjct: 33 LDMEMTGLSPENDRIIEVAMV 53 >gi|255505894|ref|ZP_05348724.3| exonuclease family protein [Bryantella formatexigens DSM 14469] gi|255265267|gb|EET58472.1| exonuclease family protein [Bryantella formatexigens DSM 14469] Length = 318 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 19/108 (17%) Query: 2 IRKNKMRKIVFDIETTGLDSKND-------------RIIEIGAVELLDYSKTNRTFQVFL 48 + M IVFD+E I+EIGA++L F ++ Sbjct: 1 MYNKLMNYIVFDLE-----WNQCPDGKEHEMRELPFEILEIGAIKLNSEKIETDRFHEYI 55 Query: 49 CPNGR-KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI 95 P + + ++ I E L++ F ++ F ++ Sbjct: 56 RPTVYTRMHNKTQEIVHIRQEVLENADFFPAVLERFREWCGPDAHYCT 103 >gi|307945043|ref|ZP_07660379.1| exonuclease RNase T and DNA polymerase III [Roseibium sp. TrichSKD4] gi|307770916|gb|EFO30141.1| exonuclease RNase T and DNA polymerase III [Roseibium sp. TrichSKD4] Length = 231 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 56/171 (32%), Gaps = 10/171 (5%) Query: 7 MRKIVFDIETTGLDSKNDR-IIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+ V D ETTGL S + I E +L + P G PE + +H Sbjct: 1 MKFRVIDFETTGLPSDTRKAICEAAFCDLDAETDIIADPVSTLVDP-GHSIPPETMAVHH 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I D+ + PS + + ++AHN +F+ F R R+ Sbjct: 60 IRDQDVAGCPSPTEACRMLMGG-MGEEDVFVAHNIEFEKFFFGGGDHRWICTLKCAVRLW 118 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + L L H A D+ + + + M+ Sbjct: 119 PDAPSHKNQVLRYWKGLTDL------GDLALPAHRAGPDTFVTAHLLRLML 163 >gi|66968596|ref|YP_245473.1| putative transposase [Pseudomonas aeruginosa] gi|66862678|emb|CAI46979.1| putative transposase [Pseudomonas aeruginosa] gi|112553494|gb|ABI20463.1| transposase [uncultured bacterium] Length = 275 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 45/137 (32%), Gaps = 12/137 (8%) Query: 10 IVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IV D ETTGL D I EI +++ + P R EA +H ITD Sbjct: 87 IVLDTETTGL---GDDAEICEITILDVTG----APILDTLVRP-TRPIPVEATAIHKITD 138 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + PS+ + ++ + A+N FD + Q + L Sbjct: 139 AMVASAPSWPEVAEQYAAAVAGRTVV--AYNVAFDARLLRQTYQIHGITAPVLTTACAML 196 Query: 128 SIARRKHPSSRNDLNSL 144 A R+ Sbjct: 197 MYAEWHGEYDRSRDRWR 213 >gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] Length = 583 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%) Query: 1 MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 M + + I D ETTGLD R+I++ A +L F P GR+ Sbjct: 21 MEKLTAAKVIAVDTETTGLDPHTCQLRLIQLAAEDLP--VLVIDCFSFL--PEGRE 72 >gi|284925719|gb|ADC28071.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni IA3902] Length = 256 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 + DIE+TG I+EIGAV++ + + R FQ F+ Sbjct: 74 IVDIESTGG-VSKGEILEIGAVKIQNSKEIGR-FQSFVK 110 >gi|86149218|ref|ZP_01067450.1| DNA polymerase III PolC-type [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596976|ref|ZP_01100212.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|218562107|ref|YP_002343886.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840576|gb|EAQ57833.1| DNA polymerase III PolC-type [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190665|gb|EAQ94638.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112359813|emb|CAL34600.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315928220|gb|EFV07537.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930011|gb|EFV09154.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 253 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 + DIE+TG I+EIGAV++ + + R FQ F+ Sbjct: 74 IVDIESTGG-VSKGEILEIGAVKIQNSKEIGR-FQSFVK 110 >gi|313106840|ref|ZP_07793049.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 39016] gi|310879551|gb|EFQ38145.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 39016] Length = 478 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 21/172 (12%), Positives = 46/172 (26%), Gaps = 8/172 (4%) Query: 7 MRKIVF--DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLH 63 M +F D ETTG+D + DR ++I + + ++ ++ P+ L Sbjct: 1 MNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLI 60 Query: 64 GITDEFLKDKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + S + +N+ + F + + Sbjct: 61 TGITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNS---LRFDDEVTRYSLYRNFFDP 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + R + GI +L L + ++ Sbjct: 118 YAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLE 169 >gi|297623751|ref|YP_003705185.1| exonuclease RNase T and DNA polymerase III [Truepera radiovictrix DSM 17093] gi|297164931|gb|ADI14642.1| Exonuclease RNase T and DNA polymerase III [Truepera radiovictrix DSM 17093] Length = 177 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 8/119 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ETTGL K+ +IE+ + + P + +P A ++H IT L Sbjct: 15 ILDTETTGL--KSAEVIELALLSTRGEVL----LDTLVRPKVMRLNPYAARVHRITLAEL 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 D+P++ + E + A +A NA FD + A Sbjct: 69 ADRPTWPEVLPELRR--LAERATVLAWNAPFDARMLEATSAAWGLPHPRLLFACAMRLY 125 >gi|115373916|ref|ZP_01461207.1| oligoribonuclease [Stigmatella aurantiaca DW4/3-1] gi|310817902|ref|YP_003950260.1| oligoribonuclease [Stigmatella aurantiaca DW4/3-1] gi|115369044|gb|EAU67988.1| oligoribonuclease [Stigmatella aurantiaca DW4/3-1] gi|309390974|gb|ADO68433.1| Oligoribonuclease [Stigmatella aurantiaca DW4/3-1] Length = 186 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + IIEIG + Sbjct: 11 LDLEMTGLDPETCAIIEIGVI 31 >gi|116206844|ref|XP_001229231.1| hypothetical protein CHGG_02715 [Chaetomium globosum CBS 148.51] gi|88183312|gb|EAQ90780.1| hypothetical protein CHGG_02715 [Chaetomium globosum CBS 148.51] Length = 228 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK 39 D E TGLD + D IIEI + + D Sbjct: 22 IDCEMTGLDPETDAIIEIYCI-ITDGQL 48 >gi|323141646|ref|ZP_08076527.1| exonuclease [Phascolarctobacterium sp. YIT 12067] gi|322413861|gb|EFY04699.1| exonuclease [Phascolarctobacterium sp. YIT 12067] Length = 216 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 68/209 (32%), Gaps = 15/209 (7%) Query: 8 RKIVFDIE-TT---------GLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNS 56 + +V D E TT G S+ IIEIGAV+L T+ Q F+ P+ Sbjct: 3 KFLVVDFEFTTYERPVGRPRGFFSE---IIEIGAVKLDGEPLTDCGRIQSFVKPHFYPKQ 59 Query: 57 PE-ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 + ++ IT + ++ F ++ E + ++A + + + Sbjct: 60 AKDSMDFCMITAKDMQQAIEFPAMVQELAALYESGETYFVAWGTEDYKVLQTGCERHKIE 119 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +P+ +D R + H A D++ + I+M Sbjct: 120 NPVKYEDYLDLALAYRLWKGDDYTTGLKKATEEQEVNTAGLWHTAFDDANNTGKLLIEMF 179 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNIS 204 G ++ F E + + Sbjct: 180 NRGWKLEDFFVAREAYEAERAARQAERAK 208 >gi|294339527|emb|CAZ87886.1| oligoribonuclease [Thiomonas sp. 3As] Length = 203 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ DRIIE+ V Sbjct: 22 VDMEMTGLNPDTDRIIEVAVV 42 >gi|261888732|ref|YP_003264421.1| hypothetical protein pSLTBT_p060 [Salmonella enterica subsp. enterica serovar Typhimurium] gi|305696883|ref|YP_003864198.1| hypothetical protein pYT1_p055 [Salmonella enterica subsp. enterica serovar Typhimurium] gi|261857320|emb|CBA11393.1| hypothetical protein SLT-BT0592 [Salmonella enterica subsp. enterica serovar Typhimurium] gi|304376185|dbj|BAJ15347.1| hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312915768|dbj|BAJ39741.1| YacC [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|327536789|gb|AEA95620.1| hypothetical protein pSD853_77_39 [Salmonella enterica subsp. enterica serovar Dublin] Length = 169 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 + D ETTGLD+ + +EIG V R F+ L P + Sbjct: 106 VFLDTETTGLDA-GAQALEIGLVNARG----ERIFETRLKPTVGIDPA 148 >gi|224504290|ref|YP_002635630.1| hypothetical protein SPC_p058 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224470999|gb|ACN48828.1| hypothetical protein SPC_p058 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 169 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 + D ETTGLD+ + +EIG V R F+ L P + Sbjct: 106 VFLDTETTGLDA-GAQALEIGLVNARG----ERIFETRLKPTVGIDPA 148 >gi|161867921|ref|YP_001598102.1| YacC [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|161087300|gb|ABX56770.1| YacC [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|323133004|gb|ADX20433.1| YacC protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326626290|gb|EGE32634.1| YacC protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 172 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 + D ETTGLD+ + +EIG V R F+ L P + Sbjct: 109 VFLDTETTGLDA-GAQALEIGLVNARG----ERIFETRLKPTVGIDPA 151 >gi|12084972|ref|NP_073265.1| hypothetical protein pKDSC50_p41 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|60115507|ref|YP_209299.1| hypothetical protein SCV45 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|586926|sp|P37414|YTL1_SALTY RecName: Full=Uncharacterized protein pSLT049 gi|444032|emb|CAA82633.1| 15 kDa protein similar to coliphage 186 CP81 [Salmonella enterica subsp. enterica serovar Typhimurium] gi|12060342|dbj|BAB20548.1| orf41 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|16445245|gb|AAL23463.1| putative DNA polymerase III epsilon subunit (3'-5' exonuclease) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|45359331|gb|AAS58918.1| hypothetical protein pSLT049 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|267990085|gb|ACY86482.1| putative DNA polymerase III epsilon subunit (3'-5' exonuclease) [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|322713012|gb|EFZ04584.1| hypothetical protein SCA50_p44 [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|332991504|gb|AEF10486.1| putative DNA polymerase III epsilon subunit (3'-5' exonuclease) [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 138 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 + D ETTGLD+ + +EIG V R F+ L P + Sbjct: 75 VFLDTETTGLDA-GAQALEIGLVNARG----ERIFETRLKPTVGIDPA 117 >gi|255524855|ref|ZP_05391804.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] gi|255511425|gb|EET87716.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] Length = 306 Score = 43.8 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 5/150 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M D ET + + + IG + + + + P + P + +HGI Sbjct: 1 MNFTAIDFET--ANERRNSPCSIGIAVVKNGHVVEKI-HHLIRPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++++P F ++ + +F+ IAHNA FD+ + + + D I Sbjct: 58 PAVVENEPEFDKVWEKIKHYFDG--NLVIAHNASFDISVLRKTAELYDIDLPKFKYICTM 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156 LN++ G H Sbjct: 116 KLSKNFYRGIENAKLNTVNDFLGYEFKHHD 145 >gi|78186412|ref|YP_374455.1| exonuclease [Chlorobium luteolum DSM 273] gi|78166314|gb|ABB23412.1| Exonuclease [Chlorobium luteolum DSM 273] Length = 197 Score = 43.8 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 71/196 (36%), Gaps = 23/196 (11%) Query: 7 MRKIV-FDIETTGLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+K++ FD+ETTG+D II+ G E+ +F++ + P+ + Sbjct: 1 MKKVLWFDLETTGIDPDRHGIIQFAGLAEIEG--VVAESFEIKMQPHEGAMIEDEALAVS 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQN---------AEWIAHNAKFDVGFINAELQRINK 115 + + + D F ++ +N +FD+ F++ +R ++ Sbjct: 59 GFSREQIASFTPHAEAYKAIDGFLARHVSRFERNDKFYPAGYNVRFDLDFLSRMFRRYDQ 118 Query: 116 DPLDPSRIIDTLSIARRKHPSSR--------NDLNSLCKRYGITISHRSKHGALLDSHLL 167 L +L + + L ++C+ G+ + H AL D Sbjct: 119 YGLGSFINWRSLDPQPILNIMEYMGRLSLPNHKLQTVCEHLGVR--LENAHDALSDIKAT 176 Query: 168 SDVYIKMMVGGSQINF 183 ++ +M S F Sbjct: 177 RELMELLMEHVSIAPF 192 >gi|319760221|ref|YP_004124159.1| oligoribonuclease [Candidatus Blochmannia vafer str. BVAF] gi|318038935|gb|ADV33485.1| oligoribonuclease [Candidatus Blochmannia vafer str. BVAF] Length = 182 Score = 43.8 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ + DRIIEI Sbjct: 8 IDLEMTGLNPEKDRIIEIA 26 >gi|312898045|ref|ZP_07757451.1| DNA polymerase III subunit epsilon domain protein [Megasphaera micronuciformis F0359] gi|310620870|gb|EFQ04424.1| DNA polymerase III subunit epsilon domain protein [Megasphaera micronuciformis F0359] Length = 184 Score = 43.8 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 5/166 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D ET + D + AV + S + + + P + + +++HGIT + + Sbjct: 6 AIDFET--ANRYADSACSLAAVSIAGQSVMHEGY-TLIKPPFNRFDEDNIRIHGITPQMV 62 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KP+F +++ + N+ IAH A FD + + ++R N L+ S Sbjct: 63 SAKPTFDALWPDIRKRLNK--RILIAHYAVFDTRVLRSLIKRYNLPGLNASYACTVEISR 120 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L+++ G T H + + Sbjct: 121 KVWPDLPNHKLDTVAGHLGFTFRHHQALDDARACARIVCAAAERTG 166 >gi|289665345|ref|ZP_06486926.1| putative PAS/PAC sensor protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 196 Score = 43.8 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 15/25 (60%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34 +V D ETTG+D I+ +G V + Sbjct: 10 VVVDTETTGVDPFVHDILSVGLVSM 34 >gi|327194608|gb|EGE61458.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli CNPAF512] Length = 224 Score = 43.8 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 5/155 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 IR ++ I D ET + + +G + + T R + + P + S + Sbjct: 24 IRYAALKTIAIDFET--ANEQRGSACSVGLAWIDEGRVT-RVEERLIRPRDMRFSGMNIA 80 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI E ++D P F + EF + + AHNA FD A L + + + Sbjct: 81 IHGIRPEHVEDAPEFPEVMDEFHEDISGATMI--AHNAAFDFSVWRASLDLYRQSYPELT 138 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156 + R + LN + + G+ H + Sbjct: 139 YLCSLKMAQRIWPHFLSHRLNLIAEHLGLRFMHHN 173 >gi|296135421|ref|YP_003642663.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia K12] gi|295795543|gb|ADG30333.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia K12] Length = 203 Score = 43.8 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ DRIIE+ V Sbjct: 22 VDMEMTGLNPDTDRIIEVAVV 42 >gi|115650166|ref|XP_781221.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] Length = 210 Score = 43.8 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 6/129 (4%) Query: 9 KIVFDIETTGLDSKN---DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D E T LD++ +IE +++ + +T TF ++ P +L G Sbjct: 79 FLVLDFEATCLDNERIEPQEVIEFPVLKVSGKTFETEATFHQYVEPQVHGVGEFCTRLTG 138 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT + +K +P+F+ F + + KF + + Sbjct: 139 ITPDMVKGQPTFADTLKLF--HVWMEKEGLVDPEVKFIFVTCGDWDLKTMFPSQCAHFEL 196 Query: 125 DTLSIARRK 133 S RR Sbjct: 197 PYHSYFRRW 205 >gi|149199563|ref|ZP_01876597.1| putative exonuclease [Lentisphaera araneosa HTCC2155] gi|149137359|gb|EDM25778.1| putative exonuclease [Lentisphaera araneosa HTCC2155] Length = 165 Score = 43.8 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 49/168 (29%), Gaps = 5/168 (2%) Query: 7 MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M + D ET T +K + + + + + + + P + S + +HGI Sbjct: 1 MDFVAIDFETAT---AKRNSACAVAIITVEKGVIVDE-YSELIQPPNNEYSWRNIDVHGI 56 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 K F ++ E + + V + E ++ L + Sbjct: 57 EPRHTMYKEDFEDLYPEIRKRLTGKLVVAHNESFDRSVMTRSMEYYDLDYADLGVADRWV 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + LN LC +GI + H L + Sbjct: 117 CTVKLYKAQGFKPAKLNILCDHFGIPLKHHDALSDARACAELYKRVQE 164 >gi|168032166|ref|XP_001768590.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680089|gb|EDQ66528.1| predicted protein [Physcomitrella patens subsp. patens] Length = 180 Score = 43.8 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN 41 +M + D+E +GLD + DRI+EI + + D Sbjct: 2 QMPLVWIDLEMSGLDIEKDRILEIACI-VTDGKLEK 36 >gi|325119438|emb|CBZ54991.1| Oligoribonuclease, related [Neospora caninum Liverpool] Length = 342 Score = 43.8 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 4/39 (10%) Query: 10 IV-FDIETTGLDSKNDRIIEIGAVELLD---YSKTNRTF 44 IV D E TGLD + D+IIEI + Sbjct: 167 IVWIDCEMTGLDVERDQIIEIAVIVTDGQCRRRIVGPHL 205 >gi|261855671|ref|YP_003262954.1| exodeoxyribonuclease I [Halothiobacillus neapolitanus c2] gi|261836140|gb|ACX95907.1| Exodeoxyribonuclease I [Halothiobacillus neapolitanus c2] Length = 495 Score = 43.8 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 47/168 (27%), Gaps = 7/168 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF---LCPNGRKNSPEA-LKL 62 M + +D ETTG D + DR I+ A+ D + + L P + + Sbjct: 1 MSFLFYDFETTGSDPRCDRPIQFAALRTNDELEPIDSPLTLYATLSPEVLPHPQAVLVTG 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + + + + N+ + F L+ + L Sbjct: 61 ILPQTLASSGGRPEAEFAALIHAEMMQPGTCAVGFNS---LRFDAELLRFMFWRNLRDPY 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + S R L + GI + L L+ V Sbjct: 118 AHEWKSGNSRWDVLDAARAFRLLRPEGIHWPTDEQGAPTLRLEALTKV 165 >gi|90109308|pdb|2F96|A Chain A, 2.1 A Crystal Structure Of Pseudomonas Aeruginosa Rnase T (Ribonuclease T) gi|90109309|pdb|2F96|B Chain B, 2.1 A Crystal Structure Of Pseudomonas Aeruginosa Rnase T (Ribonuclease T) Length = 224 Score = 43.8 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI A + + T+ + P G P AL+ G Sbjct: 32 VVVDVETGGFNSATDALLEIAATTVGXDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTG 91 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HN+ FD+GF+NA + R Sbjct: 92 IKLDHPLRXAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIK 151 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ G +R H A D+ ++++ ++ Sbjct: 152 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGXEFDNREAHSARYDTEKTAELFCGIVN 211 Query: 177 GGSQIN 182 + Sbjct: 212 RWKEXG 217 >gi|78776758|ref|YP_393073.1| exonuclease [Sulfurimonas denitrificans DSM 1251] gi|78497298|gb|ABB43838.1| Exonuclease [Sulfurimonas denitrificans DSM 1251] Length = 234 Score = 43.8 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 5/126 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D+ETTGL+ D+I IG + + + + ++ + G+K S +A ++ IT+E Sbjct: 3 IFLDVETTGLE-NGDKICSIGIICVSETAIFSK--YELVN-EGKKISSKASSINHITNEM 58 Query: 70 LKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KDKP F + N Q++ IAHN FD+ + +D R+ L Sbjct: 59 IKDKPKFKDSKTWEILHENNNQSSTIIAHNVNFDLKMLLQSGFLWQGKVVDTLRVTKHLI 118 Query: 129 IARRKH 134 + Sbjct: 119 PECEEF 124 >gi|294815713|ref|ZP_06774356.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|294328312|gb|EFG09955.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] Length = 251 Score = 43.8 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 15/31 (48%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 FD+ETTG D + RI+ VE R Sbjct: 22 FDLETTGTDPREARIVTAAVVEARAGEPVRR 52 >gi|326444059|ref|ZP_08218793.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] Length = 285 Score = 43.8 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 15/31 (48%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 FD+ETTG D + RI+ VE R Sbjct: 56 FDLETTGTDPREARIVTAAVVEARAGEPVRR 86 >gi|254392979|ref|ZP_05008143.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|197706630|gb|EDY52442.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] Length = 240 Score = 43.8 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 15/31 (48%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 FD+ETTG D + RI+ VE R Sbjct: 11 FDLETTGTDPREARIVTAAVVEARAGEPVRR 41 >gi|116687265|ref|YP_840511.1| exonuclease, RNase T and DNA polymerase III [Burkholderia cenocepacia HI2424] gi|116652980|gb|ABK13618.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia cenocepacia HI2424] Length = 293 Score = 43.8 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 54/162 (33%), Gaps = 11/162 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D ETTGLD + I+EI ++ + + P A ++HGITD + Sbjct: 131 FIDTETTGLDHQ-AAIVEIAILDRAGAVLID----TLVKP-AMPIPAAATEIHGITDADV 184 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P++++I + + IAHN FD + + + Sbjct: 185 AGAPAWNTIGPQVAELLAG--RLLIAHNGAFDERLLYQTSRSHGVTLPALRVECTMELLN 242 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +L G ++H A D+ + + Sbjct: 243 GWAGRWLSLADAALMLGAGT---FAARHRACADAEQCRQIVL 281 >gi|257452752|ref|ZP_05618051.1| exonuclease [Fusobacterium sp. 3_1_5R] gi|317059293|ref|ZP_07923778.1| exonuclease [Fusobacterium sp. 3_1_5R] gi|313684969|gb|EFS21804.1| exonuclease [Fusobacterium sp. 3_1_5R] Length = 186 Score = 43.8 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 2/139 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ETTGL ++ II++ A+ +D + T ++ P + E Sbjct: 1 MKILYLDTETTGLTYRS-TIIQLAAIVEIDG-EIKETINLYCAPFPDSDISEEALSITKF 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + + + + N KF V N + Sbjct: 59 TREEIFQFDSPQVVCQTFTQILGKYVDKYNKNDKFIVIGHNVKFDLDMLRNWAYRCNERF 118 Query: 127 LSIARRKHPSSRNDLNSLC 145 ++ + C Sbjct: 119 IASYIDFKNEFDTLAFTKC 137 >gi|153872365|ref|ZP_02001281.1| Exodeoxyribonuclease I [Beggiatoa sp. PS] gi|152071166|gb|EDN68716.1| Exodeoxyribonuclease I [Beggiatoa sp. PS] Length = 312 Score = 43.8 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 20/152 (13%), Positives = 38/152 (25%), Gaps = 1/152 (0%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67 + +DIETTGL+ +I++ A+ + + SP+A H I+ Sbjct: 5 YLFYDIETTGLNKTFAQILQFAAIRTDMQFNEIERHDILIKLRPDVIPSPKATITHRISI 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + N+ + +N N P + D Sbjct: 65 AQSMQGLCEFEAIMQIHRLMNQSGTISLGYNTSSFDDEFLRFCFHRNLLPPYTHQYKDGC 124 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 + + L Sbjct: 125 RRSDLLPITIMYYLYKKEVLENWPEIDGKPTM 156 >gi|330808406|ref|YP_004352868.1| exonuclease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376514|gb|AEA67864.1| Conserved hypothetical protein; putative exonuclease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 180 Score = 43.8 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 5/130 (3%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63 +V D+E TT G IIEIGA + + FQ F+ P R +P +L Sbjct: 4 WLVIDLEATTDEGGWPVTEMEIIEIGATLVNRDGREVDHFQRFVRPLRRPLLTPFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 IT + + ++ F + ++ + + D + ++ Sbjct: 64 HITQANIDSAAPLTEVWPAFERWLTPYQSKLESWVSWGDYDRKQLLQEWQHQQLHSVLGQ 123 Query: 124 IDTLSIARRK 133 + +++ +R Sbjct: 124 VPHMNLKQRF 133 >gi|257466613|ref|ZP_05630924.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563] gi|315917768|ref|ZP_07914008.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563] gi|313691643|gb|EFS28478.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563] Length = 186 Score = 43.8 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 2/139 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ETTGL ++ II++ A+ +D + T ++ P + E Sbjct: 1 MKILYLDTETTGLTYRS-TIIQLAAIVEIDG-EIKETINLYCAPFPDSDISEEALSITKF 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + + + + N KF V N + Sbjct: 59 TREEIFQFDSPQVVCQTFTQILGKYVDKYNKNDKFIVIGHNVKFDLDMLRNWAYRCNERF 118 Query: 127 LSIARRKHPSSRNDLNSLC 145 ++ + C Sbjct: 119 IASYIDFKNEFDTLAFTKC 137 >gi|148272620|ref|YP_001222181.1| oligoribonuclease [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830550|emb|CAN01485.1| oligoribonuclease [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 206 Score = 43.8 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNG 52 + N R + D E TGLD D ++E+ V D + F + + P+ Sbjct: 1 MGNNADRLVWIDCEMTGLDLAIDELVEVAVVVTDFDLVPVDDGFTIVINPDP 52 >gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21] gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21] Length = 879 Score = 43.8 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 62/222 (27%), Gaps = 21/222 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD ETTGL+++ +I+ V N F V L + Sbjct: 319 IAFDTETTGLNAREAKIVGFSFCV------SENEAFYVPLNHTYLAVPSQISMQAAKRAL 372 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ E N + + + + +P + D Sbjct: 373 GQIYSHFIIGHNLKYDFAIIENNFKLTPP-----KKYADTMILAWLYNPSLRVNMDDLAL 427 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGSQ 180 + + + ++ + A D+++ Y+ ++ G + Sbjct: 428 RLFDYKTLHFESVVKKGENFASVELEKACNYAAEDAYITLRFYLYFLKNLEPNLLKLGFE 487 Query: 181 INFGF-KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 F F + K + L ++ ++ EE+ Sbjct: 488 SEFNFIEVLRKMEQNGIKLETQKLQNLMQEFEKEIKLLSEEI 529 >gi|311895419|dbj|BAJ27827.1| putative exonuclease [Kitasatospora setae KM-6054] Length = 235 Score = 43.8 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 FD+ETTG D + RI+ V+ L T L P Sbjct: 11 FDLETTGTDPEESRIVTAAVVDTLGGGVQGAT-TWLLDPGVPIPDE 55 >gi|259419276|ref|ZP_05743193.1| exodeoxyribonuclease 10 [Silicibacter sp. TrichCH4B] gi|259345498|gb|EEW57352.1| exodeoxyribonuclease 10 [Silicibacter sp. TrichCH4B] Length = 240 Score = 43.8 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 71/175 (40%), Gaps = 5/175 (2%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG +N ++IE G V++ + F+ P P + +H ITD Sbjct: 11 VIDYETTGTQEDENAQVIEFGRVDVDLDTLGIVNPFRALAKP-SEPIPPVTMAVHHITDT 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P ++ FWD ++ AHNAKF+ F + ++ + Sbjct: 70 DVADAPPPGQVWQPFWDGCRSEDYV-AAHNAKFEQYFHDGNGRKWICTYKSALVVWPDAP 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + ++++ + + + H AL D+++ + + ++++ + Sbjct: 129 SHGNQALRYWLGIDNIHPSF-DRDAAQPPHRALPDAYVTAHILLELLKHKTPEEL 182 >gi|86151527|ref|ZP_01069741.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni subsp. jejuni 260.94] gi|315123999|ref|YP_004066003.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841156|gb|EAQ58404.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni subsp. jejuni 260.94] gi|315017721|gb|ADT65814.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 253 Score = 43.8 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 6/122 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIE+TG I+EIGA ++ + + R FQ F+ ++ +L GIT E + Sbjct: 74 IVDIESTGG-VSKGEILEIGAAKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYEMV 129 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ PS + + S+F +++ ++AHN +FD FI+ L L RI Sbjct: 130 ENAPSLAKVLSDF--RLFLKDSIFVAHNVRFDYSFISKALNECGFGILLNRRICTIEFAQ 187 Query: 131 RR 132 Sbjct: 188 CC 189 >gi|157120012|ref|XP_001653487.1| oligoribonuclease, mitochondrial [Aedes aegypti] gi|157120014|ref|XP_001653488.1| oligoribonuclease, mitochondrial [Aedes aegypti] gi|108875101|gb|EAT39326.1| oligoribonuclease, mitochondrial [Aedes aegypti] gi|108875102|gb|EAT39327.1| oligoribonuclease, mitochondrial [Aedes aegypti] Length = 192 Score = 43.8 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 9/151 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70 D+E TGL+ + DRI+EI V TN+ ++ P+ + PE + Sbjct: 21 IDLEMTGLEVEKDRILEIACV------ITNKNLEILERGPDIVIHEPEEVLNAMNEWCQT 74 Query: 71 KDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++ D + I D + R + L+ Sbjct: 75 NHSKTGLIQAVRESKIDLQKAEQMVLDFVKKYCPEKACPLAGNTIYMDRMFLYRYMPQLN 134 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 + + LCKR+ + Sbjct: 135 EYLHYRIIDVSTVKELCKRWNGAVFSNCPPK 165 >gi|297191229|ref|ZP_06908627.1| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis ATCC 25486] gi|297150828|gb|EDY62400.2| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis ATCC 25486] Length = 259 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 15/29 (51%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT 40 FD+ETTG D + RI+ VEL Sbjct: 30 FDLETTGTDPLDARIVTAAVVELRAGEPV 58 >gi|254571599|ref|XP_002492909.1| RNA exonuclease, required for U4 snRNA maturation [Pichia pastoris GS115] gi|238032707|emb|CAY70730.1| RNA exonuclease, required for U4 snRNA maturation [Pichia pastoris GS115] Length = 213 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD ND I+EI + + + ++ + + S Sbjct: 41 IDCEMTGLDIYNDHIVEICCIITDQNLEVVDEGYESVIHYDNDVMSKMNEWCIEHH 96 >gi|255658382|ref|ZP_05403791.1| putative DNA polymerase III subunit epsilon [Mitsuokella multacida DSM 20544] gi|260849714|gb|EEX69721.1| putative DNA polymerase III subunit epsilon [Mitsuokella multacida DSM 20544] Length = 241 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Query: 8 RKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50 R +V FD+E G D IIEIGA+ L + F+ + P Sbjct: 39 RGVVSFDLEMAGAFP--DDIIEIGAIRLPLGNDKIEVFRRLIRP 80 >gi|296391019|ref|ZP_06880494.1| exonuclease I [Pseudomonas aeruginosa PAb1] Length = 480 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 19/164 (11%), Positives = 43/164 (26%), Gaps = 6/164 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTG+D + DR ++I + + ++ ++ P+ L Sbjct: 11 DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70 Query: 72 DKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S + +N+ + F + + + Sbjct: 71 AERGLSEADFMTRVHAQLAQPATCVAGYNS---LRFDDEVTRYSLYRNFFDPYAREWQGG 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R + GI +L L + ++ Sbjct: 128 NSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLE 171 >gi|225435975|ref|XP_002271328.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296083947|emb|CBI24335.3| unnamed protein product [Vitis vinifera] Length = 245 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 10/28 (35%), Positives = 15/28 (53%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK 39 D+E TGL+ + DRI+EI + Sbjct: 69 IDLEMTGLNVEVDRILEIACIITDGNLI 96 >gi|218893406|ref|YP_002442275.1| exonuclease I [Pseudomonas aeruginosa LESB58] gi|218773634|emb|CAW29448.1| exodeoxyribonuclease I [Pseudomonas aeruginosa LESB58] Length = 480 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 19/164 (11%), Positives = 43/164 (26%), Gaps = 6/164 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTG+D + DR ++I + + ++ ++ P+ L Sbjct: 11 DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70 Query: 72 DKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S + +N+ + F + + + Sbjct: 71 AERGLSEADFMTRVHAQLAQPATCVAGYNS---LRFDDEVTRYSLYRNFFDPYAREWQGG 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R + GI +L L + ++ Sbjct: 128 NSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLE 171 >gi|118790162|ref|XP_318057.3| AGAP004759-PA [Anopheles gambiae str. PEST] gi|116122385|gb|EAA13240.3| AGAP004759-PA [Anopheles gambiae str. PEST] Length = 191 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 18/32 (56%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 M + + D+E TGLD + DRI+EI + Sbjct: 1 MSETSVQNLVWIDLEMTGLDVEKDRILEIACI 32 >gi|107100101|ref|ZP_01364019.1| hypothetical protein PaerPA_01001122 [Pseudomonas aeruginosa PACS2] Length = 480 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 19/164 (11%), Positives = 43/164 (26%), Gaps = 6/164 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTG+D + DR ++I + + ++ ++ P+ L Sbjct: 11 DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70 Query: 72 DKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S + +N+ + F + + + Sbjct: 71 AERGLSEADFMTRVHAQLAQPATCVAGYNS---LRFDDEVTRYSLYRNFFDPYAREWQGG 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R + GI +L L + ++ Sbjct: 128 NSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLE 171 >gi|15599512|ref|NP_253006.1| exonuclease I [Pseudomonas aeruginosa PAO1] gi|9950540|gb|AAG07704.1|AE004848_3 exodeoxyribonuclease I [Pseudomonas aeruginosa PAO1] Length = 480 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 19/164 (11%), Positives = 43/164 (26%), Gaps = 6/164 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTG+D + DR ++I + + ++ ++ P+ L Sbjct: 11 DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70 Query: 72 DKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S + +N+ + F + + + Sbjct: 71 AERGLSEADFMTRVHAQLAQPATCVAGYNS---LRFDDEVTRYSLYRNFFDPYAREWQGG 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R + GI +L L + ++ Sbjct: 128 NSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLE 171 >gi|254244874|ref|ZP_04938196.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 2192] gi|126198252|gb|EAZ62315.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 2192] Length = 480 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 19/164 (11%), Positives = 43/164 (26%), Gaps = 6/164 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTG+D + DR ++I + + ++ ++ P+ L Sbjct: 11 DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70 Query: 72 DKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S + +N+ + F + + + Sbjct: 71 AERGLSEADFMTRVHAQLAQPATCVAGYNS---LRFDDEVTRYSLYRNFFDPYAREWQGG 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R + GI +L L + ++ Sbjct: 128 NSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLE 171 >gi|254239017|ref|ZP_04932340.1| exodeoxyribonuclease I [Pseudomonas aeruginosa C3719] gi|126170948|gb|EAZ56459.1| exodeoxyribonuclease I [Pseudomonas aeruginosa C3719] Length = 480 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 19/164 (11%), Positives = 43/164 (26%), Gaps = 6/164 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTG+D + DR ++I + + ++ ++ P+ L Sbjct: 11 DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70 Query: 72 DKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S + +N+ + F + + + Sbjct: 71 AERGLSEADFMTRVHAQLAQPATCVAGYNS---LRFDDEVTRYSLYRNFFDPYAREWQGG 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R + GI +L L + ++ Sbjct: 128 NSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLE 171 >gi|116052350|ref|YP_792661.1| exonuclease I [Pseudomonas aeruginosa UCBPP-PA14] gi|115587571|gb|ABJ13586.1| exodeoxyribonuclease I [Pseudomonas aeruginosa UCBPP-PA14] Length = 480 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 19/164 (11%), Positives = 43/164 (26%), Gaps = 6/164 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTG+D + DR ++I + + ++ ++ P+ L Sbjct: 11 DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70 Query: 72 DKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S + +N+ + F + + + Sbjct: 71 AERGLSEADFMTRVHAQLAQPATCVAGYNS---LRFDDEVTRYSLYRNFFDPYAREWQGG 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R + GI +L L + ++ Sbjct: 128 NSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANGLE 171 >gi|331002523|ref|ZP_08326041.1| hypothetical protein HMPREF0491_00903 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410339|gb|EGG89773.1| hypothetical protein HMPREF0491_00903 [Lachnospiraceae oral taxon 107 str. F0167] Length = 331 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 55/235 (23%), Gaps = 26/235 (11%) Query: 9 KIVFDIE----TTGLDS-KND---RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 IV D+E G + D IIEIGA++L +T F + P K + Sbjct: 4 YIVLDLEWNQSPNGREYSNKDLPFEIIEIGALKLNSRLETVDEFHRVIKPTVYKKMHFKV 63 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 F + + N + + + + Sbjct: 64 HEV-----VQIGIGELKKKGVPFVEAIRDFFEFCELDNPEKKKILCTWGNLDLVELQRNM 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L ++ G + + + Sbjct: 119 KFYGVENKFDYPLFYYDIQKLFNIRYPNGEQDRIPLERAVNMLGIETRRPFHHAFDDAFY 178 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH----DKTIQTL 231 + + KE D R ++EE+ H K + TL Sbjct: 179 TVKVLQNMDFEPVKE---------YYSLDYYRVPRNSEEEIYLHFSGYSKFVSTL 224 >gi|33593655|ref|NP_881299.1| oligoribonuclease [Bordetella pertussis Tohama I] gi|33596303|ref|NP_883946.1| oligoribonuclease [Bordetella parapertussis 12822] gi|33602411|ref|NP_889971.1| oligoribonuclease [Bordetella bronchiseptica RB50] gi|41017436|sp|Q7VVH7|ORN_BORPE RecName: Full=Oligoribonuclease gi|41017438|sp|Q7W9T4|ORN_BORPA RecName: Full=Oligoribonuclease gi|41017439|sp|Q7WGX3|ORN_BORBR RecName: Full=Oligoribonuclease gi|33563728|emb|CAE42963.1| oligoribonuclease [Bordetella pertussis Tohama I] gi|33566072|emb|CAE36971.1| oligoribonuclease [Bordetella parapertussis] gi|33576850|emb|CAE33930.1| oligoribonuclease [Bordetella bronchiseptica RB50] gi|332383059|gb|AEE67906.1| oligoribonuclease [Bordetella pertussis CS] Length = 181 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 + N+ R + D+E TGLD + +RIIE+ V Sbjct: 1 MAANENRLVWLDMEMTGLDPEKERIIEVAVV 31 >gi|310816220|ref|YP_003964184.1| Exonuclease [Ketogulonicigenium vulgare Y25] gi|308754955|gb|ADO42884.1| Exonuclease [Ketogulonicigenium vulgare Y25] Length = 200 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 12/130 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R + D+ET + + I +IG AV + T T+ + P + +HGI Sbjct: 18 RFLALDVET--ANYRAHSICQIGIAAVRPDN---TIETWTTLIDPED-DFVANNIAIHGI 71 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 E + P F+ F + + + A D Sbjct: 72 RPEAVVGAPRFAQAFRQLSPVLSRH----LIFQHSSFDSRCFAAAAERAYLDPPEWTWSD 127 Query: 126 TLSIARRKHP 135 ++++ARR P Sbjct: 128 SVTLARRVWP 137 >gi|251794793|ref|YP_003009524.1| exonuclease RNase T and DNA polymerase III [Paenibacillus sp. JDR-2] gi|247542419|gb|ACS99437.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus sp. JDR-2] Length = 264 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 4/85 (4%) Query: 7 MRKIVFDIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKL 62 M I+ DIE G +D +IEIGAV L + F + P + K Sbjct: 1 MDYIILDIEFNGRKFASDLPMEVIEIGAVRLNADLQQTDIFSSLIKPVYFSKLNSFIKKK 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFF 87 GI E + P F + EF ++ Sbjct: 61 TGIPQEEIDIAPKFPRVIGEFINWL 85 >gi|167854572|ref|ZP_02477353.1| oligoribonuclease [Haemophilus parasuis 29755] gi|167854327|gb|EDS25560.1| oligoribonuclease [Haemophilus parasuis 29755] Length = 183 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 20/30 (66%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M +++K I D+E TGLD + +RIIEI Sbjct: 1 MSQQDKQNLIWIDLEMTGLDPEKERIIEIA 30 >gi|152981086|ref|YP_001352542.1| oligoribonuclease [Janthinobacterium sp. Marseille] gi|151281163|gb|ABR89573.1| oligoribonuclease protein [Janthinobacterium sp. Marseille] Length = 195 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 15/31 (48%), Positives = 19/31 (61%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 IR N+ + D+E TGLD DRIIE+ V Sbjct: 15 IRPNEFNLVWVDMEMTGLDPDKDRIIEVAVV 45 >gi|83648050|ref|YP_436485.1| oligoribonuclease [Hahella chejuensis KCTC 2396] gi|123531236|sp|Q2SBB4|ORN_HAHCH RecName: Full=Oligoribonuclease gi|83636093|gb|ABC32060.1| Oligoribonuclease (3'->5' exoribonuclease) [Hahella chejuensis KCTC 2396] Length = 182 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD +DRIIE+ V Sbjct: 10 IDLEMTGLDPDSDRIIEMAVV 30 >gi|58258529|ref|XP_566677.1| oligoribonuclease [Cryptococcus neoformans var. neoformans JEC21] gi|57222814|gb|AAW40858.1| oligoribonuclease, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 184 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 14/26 (53%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37 D E TGLD NDRIIEI + Sbjct: 16 VDCEMTGLDFLNDRIIEIAVIITDGR 41 >gi|288939927|ref|YP_003442167.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum DSM 180] gi|288895299|gb|ADC61135.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum DSM 180] Length = 225 Score = 43.4 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 8/170 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITD 67 + D+ETTGLD + D I+ +G V L T + R + +H ITD Sbjct: 41 YLAIDLETTGLDQRQDLILSVGYVVLHGPEIDLSTARHHLVR-IDRSIPEASAVIHQITD 99 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRI 123 + + E IAH+A + GF++ QR L ++ Sbjct: 100 DQAATGRELEDVLGEVLAALTG--RVMIAHHAGIEQGFLSQACQRCWGRGLPLRLVDTQT 157 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + ++ RR+ P +DL + H AL D+ +++++ Sbjct: 158 LAHRTLERRQIPFKASDLRLHALTSRYNLPRHGAHNALSDALSAAELFLA 207 >gi|158337902|ref|YP_001519078.1| exonuclease [Acaryochloris marina MBIC11017] gi|158308143|gb|ABW29760.1| exonuclease [Acaryochloris marina MBIC11017] Length = 183 Score = 43.4 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 7/131 (5%) Query: 2 IRKNKMRKIVFDIETT-----GLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKN 55 ++ ++ ++ D+E T + + +IEIGAV L + +Q F+ P Sbjct: 1 MKISQKYYLIVDLEATCADDNSIPRRRMEMIEIGAVLLNSQTLQIESEYQTFIKPILHPV 60 Query: 56 -SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 + L I+ + ++ P F + +F +F + +D + Q Sbjct: 61 LTEFCKSLTSISQQDIEKAPLFPAALKDFQSWFYPCGSYLFCSWGDYDRHQFVQDCQMHG 120 Query: 115 KDPLDPSRIID 125 P ++ Sbjct: 121 VGYPFPGDHLN 131 >gi|71892146|ref|YP_277878.1| ribonuclease T [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123640967|sp|Q492U0|RNT_BLOPB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|71796252|gb|AAZ41003.1| ribonuclease T [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 217 Score = 43.4 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 60/187 (32%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLC--PNGRKNSPEALKLH 63 +V D+ET GLD+ + ++EI + + + + P Sbjct: 20 VVVDVETAGLDANINALLEIAVATFKMDEYGWLCVDGSLNFHIKSFPGAIIQPESLAFNG 79 Query: 64 -------GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + + + A +AHNA FD F+ A ++R++ Sbjct: 80 IDLNSPLRAAVTEQEALHEIFEMVRQGIKTQGCSRAIIVAHNAFFDHSFLMAAVERVSFM 139 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +P A + + C G+ H AL D+ + ++ +++ Sbjct: 140 EKNPFHPFVMFDTATLSGLVFGQTVLAKACACAGVFFDKNKAHSALYDTERTAMLFCELV 199 Query: 176 VGGSQIN 182 ++ Sbjct: 200 NKWKRLG 206 >gi|262198353|ref|YP_003269562.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262081700|gb|ACY17669.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 187 Score = 43.4 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 16/24 (66%) Query: 13 DIETTGLDSKNDRIIEIGAVELLD 36 D+E TGLD + +RIIEI + + Sbjct: 11 DLEMTGLDPERERIIEIAVLITDN 34 >gi|255523173|ref|ZP_05390144.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] gi|296186139|ref|ZP_06854544.1| exonuclease [Clostridium carboxidivorans P7] gi|255513041|gb|EET89310.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] gi|296049407|gb|EFG88836.1| exonuclease [Clostridium carboxidivorans P7] Length = 255 Score = 43.4 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 77/234 (32%), Gaps = 18/234 (7%) Query: 7 MRKIVFDIE-TTGLDSKND-----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 M IVFD+E L+SK + II+IGAV+L + + + P Sbjct: 1 MNYIVFDLEFNQSLNSKKENKNLTNLKCPFEIIQIGAVKLDENLQIISILNKLVKPELYT 60 Query: 55 -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQ 111 +P ++ GIT + L + F ++ E +F A ++ Sbjct: 61 VMNPFVEEMTGITIDMLNTEQPFQEVYKEILEFIGNDKNILCVWGACDIKELFRNIQYHN 120 Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I + P N H AL D++ ++V+ Sbjct: 121 LDISPISKEYINIQFYASKYLNCPKGTNIGLKNAAELLNINIENKFHNALNDAYYTAEVF 180 Query: 172 IKM-MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT--RITKEELD 222 K+ + I + N +K++ + S L + +++EE Sbjct: 181 KKIPKKNINIIKYDVNKNMKPTRNNTEKSILDTSKLIKQFEKMFNREMSEEEQK 234 >gi|152988725|ref|YP_001350220.1| exonuclease I [Pseudomonas aeruginosa PA7] gi|150963883|gb|ABR85908.1| exodeoxyribonuclease I [Pseudomonas aeruginosa PA7] Length = 478 Score = 43.4 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 48/157 (30%), Gaps = 9/157 (5%) Query: 7 MRKIVF--DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLH 63 M +F D ETTG+D + DR ++I + + ++ ++ P+ H Sbjct: 1 MNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILP------H 54 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + P + F + +AH A G+ + Sbjct: 55 PMACLITGITPQRLAERGLSEADFMTRVHAQLAHPATCVAGYNSLRFDDEVTRYSLYRNF 114 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 D + + S + ++ + Y + A Sbjct: 115 FDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPEA 151 >gi|134106503|ref|XP_778262.1| hypothetical protein CNBA2620 [Cryptococcus neoformans var. neoformans B-3501A] gi|50260965|gb|EAL23615.1| hypothetical protein CNBA2620 [Cryptococcus neoformans var. neoformans B-3501A] Length = 214 Score = 43.4 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 14/26 (53%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37 D E TGLD NDRIIEI + Sbjct: 16 VDCEMTGLDFLNDRIIEIAVIITDGR 41 >gi|225077243|ref|ZP_03720442.1| hypothetical protein NEIFLAOT_02298 [Neisseria flavescens NRL30031/H210] gi|224951387|gb|EEG32596.1| hypothetical protein NEIFLAOT_02298 [Neisseria flavescens NRL30031/H210] Length = 230 Score = 43.4 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 47/178 (26%), Gaps = 3/178 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+E TGL+ ++DRIIE+ + V++ + + + T Sbjct: 56 LDMEMTGLNPEHDRIIEVAMIITDSDLNVLAQSDVYVIHQSDELLDGMDEWNTATHGRTG 115 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + A I++D + + L Sbjct: 116 LTQRVRESKLTEAEVEQNLLDFMSAW---IPEKSTPMCGNSIHQDRRFMVKYMPHLEAYF 172 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + L L KR+ ++ + I+ M + + + Sbjct: 173 HYRNLDVSTLKELAKRWNPAVAKSVVKRGSHKALDDILESIEEMRHYREHFLKLPSEQ 230 >gi|226364575|ref|YP_002782357.1| DNA polymerase III subunit epsilon [Rhodococcus opacus B4] gi|226243064|dbj|BAH53412.1| putative exonuclease [Rhodococcus opacus B4] Length = 247 Score = 43.4 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 9/145 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG D + RI+ + ++D + +RT+ L P + T+ Sbjct: 11 AFDLETTGPDPTDARIVS-ACIAVVDAHHFESRTW--LLDPEVPIPQGASDVHGISTEYA 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +++ + E D + +A NA +D+ ++ E R+ L ++D Sbjct: 68 RAHGQDYATGYREIRDALYDAWTRDHAVVAFNASYDLTVMHTEGLRLGLPELVHGIVVDP 127 Query: 127 LSIARRKHPSSRNDLN--SLCKRYG 149 I R + ++C+ YG Sbjct: 128 YVIDREMDRYRKGRRTLGAVCEHYG 152 >gi|224083745|ref|XP_002307108.1| predicted protein [Populus trichocarpa] gi|222856557|gb|EEE94104.1| predicted protein [Populus trichocarpa] Length = 244 Score = 43.4 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 3/46 (6%) Query: 10 IVFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNG 52 + FD+ETT + R ++E GA+ + ++ + P Sbjct: 13 VFFDLETTVPNKAGQRFWVLEFGAIIVCPRKLVELDSYSTLIRPED 58 >gi|260801297|ref|XP_002595532.1| hypothetical protein BRAFLDRAFT_244216 [Branchiostoma floridae] gi|229280779|gb|EEN51544.1| hypothetical protein BRAFLDRAFT_244216 [Branchiostoma floridae] Length = 208 Score = 43.4 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 21/114 (18%) Query: 9 KIVFDIETTGLD-SKNDRIIEI--GAVELLDYSKTN--------------RTFQVFLCPN 51 + FD+ETTGLD + I EI AV D T F V + P Sbjct: 3 FVFFDLETTGLDQPRQ--ITEISLAAVR-RDQLLTGTTVPPGGATIPRVMDKFTVCVRP- 58 Query: 52 GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 R P+A ++ +T++ L F + + + A F Sbjct: 59 RRDIHPKAAEITNLTNQTLGKHRVFDEDLVKSVVHLLNRQEPPVCLVAHNGNRF 112 >gi|330813552|ref|YP_004357791.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. IMCC9063] gi|327486647|gb|AEA81052.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. IMCC9063] Length = 473 Score = 43.4 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 20/39 (51%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ 45 M +D ETTG D+II++GAV + + F+ Sbjct: 1 MNYAFYDFETTGRSGTWDQIIQVGAVLVNAEFQELDRFE 39 >gi|317503610|ref|ZP_07961630.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae DSM 15606] gi|315665271|gb|EFV04918.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae DSM 15606] Length = 284 Score = 43.4 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 5/92 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIET + + +G V + + + F + P + +HGIT E + Sbjct: 8 VIDIET--MTPERTSACALGLVRVENDVIVQK-FYSLIKPIPDDRTVTNTHVHGITPEMV 64 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 ++ P+F ++ + + AHN FD Sbjct: 65 ENAPTFQDLWPTIEHYISG--QVLAAHNTSFD 94 >gi|313497913|gb|ADR59279.1| Exonuclease [Pseudomonas putida BIRD-1] Length = 183 Score = 43.4 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 5/112 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 +V D+E TT G +IEIGA + + FQ F+ P R +P +L Sbjct: 4 WLVIDLEATTDDGGWPVTEMEVIEIGASLVTREGREVDHFQRFVKPRRRPQLTPFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I+ + F +++ F + + A + D + Sbjct: 64 HISQADVDSAAPFREVWASFERWLGHHRGQLQAWVSWGDYDRQQLHQEWQQH 115 >gi|299142830|ref|ZP_07035958.1| exonuclease [Prevotella oris C735] gi|298575698|gb|EFI47576.1| exonuclease [Prevotella oris C735] Length = 284 Score = 43.4 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 5/92 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIET + + +G V + + + F + P + +HGIT E + Sbjct: 8 VIDIET--MTPERTSACALGLVRVENDVIVQK-FYSLIKPIPDDRTVTNTHVHGITPEMV 64 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 ++ P+F ++ + + AHN FD Sbjct: 65 ENAPTFQELWPTIEHYISG--QVLAAHNTSFD 94 >gi|294676886|ref|YP_003577501.1| exonuclease family protein [Rhodobacter capsulatus SB 1003] gi|294475706|gb|ADE85094.1| exonuclease family protein [Rhodobacter capsulatus SB 1003] Length = 200 Score = 43.4 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 57/180 (31%), Gaps = 10/180 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I D+ET ++ + +IG + F + P + +P + LHGI Sbjct: 9 RFIALDVET--ANADAASLCQIGLACVRHDGAI-EVFSTLIDP-RQPFAPFNVALHGIGP 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ PSF + + Q + ++ FD G I+ + Sbjct: 65 AKVRGAPSFPEVLARIAPLLAPQ---IVIQHSPFDRGAIHRACHAHDLPEPGWHWADSVQ 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 R S N + L + H A D+ + V + +Q + Sbjct: 122 IARRAWPEFSGNGGHGLAHLKQALGLEFTHHDAGEDAKAAAMVV---LRAEAQTGLRLEE 178 >gi|196250879|ref|ZP_03149564.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp. G11MC16] gi|196209608|gb|EDY04382.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp. G11MC16] Length = 207 Score = 43.4 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 48/191 (25%), Gaps = 19/191 (9%) Query: 9 KIVFDIE-------TT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPE 58 + D E TT G + IIE+G V ++D F ++ P + Sbjct: 7 YLFLDFEFTMPETKTTPNGFSPE---IIEVGLVAVVDEQIV-NQFSSYVKPLRFPQLTDR 62 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 IT E + SF + S + E+ + + P Sbjct: 63 CKSFLNITQEQIDSGMSFYELVSLLRQYDRERPTTVVTWGNMDMKVLRENCQSARVEFPF 122 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT-----ISHRSKHGALLDSHLLSDVYIK 173 + R ++ L + YG L + K Sbjct: 123 TGEHRDLAMEYKRFFGNKNQTALRKAVQEYGNEGIGKAHCALDDAFTAYTIFRLIENDKK 182 Query: 174 MMVGGSQINFG 184 + G Sbjct: 183 YLAKTKPPTIG 193 >gi|187477876|ref|YP_785900.1| oligoribonuclease [Bordetella avium 197N] gi|123515337|sp|Q2L2P5|ORN_BORA1 RecName: Full=Oligoribonuclease gi|115422462|emb|CAJ48987.1| oligoribonuclease [Bordetella avium 197N] Length = 181 Score = 43.4 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 + N+ R + D+E TGLD + +RIIE+ V Sbjct: 1 MAANENRLVWLDMEMTGLDPEKERIIEVAVV 31 >gi|330721640|gb|EGG99654.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC2047] Length = 224 Score = 43.4 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 18/31 (58%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39 +V D+ETT LD+ N ++ IG V + S Sbjct: 41 FLVVDLETTSLDADNGEVVSIGWVPVKSGSI 71 >gi|284006621|emb|CBA71882.1| oligoribonuclease [Arsenophonus nasoniae] Length = 173 Score = 43.4 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 24 IDLEMTGLDPQQDRIIEIA 42 >gi|289209008|ref|YP_003461074.1| exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp. K90mix] gi|288944639|gb|ADC72338.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp. K90mix] Length = 188 Score = 43.4 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 15/19 (78%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD +NDRIIE+ Sbjct: 11 IDLEMTGLDPQNDRIIEVA 29 >gi|254374578|ref|ZP_04990059.1| hypothetical protein FTDG_00751 [Francisella novicida GA99-3548] gi|151572297|gb|EDN37951.1| hypothetical protein FTDG_00751 [Francisella novicida GA99-3548] Length = 482 Score = 43.4 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 41/155 (26%), Gaps = 2/155 (1%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71 D+ET+G+++ D++++ A+ F F+ N P A H I+ Sbjct: 11 DLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPMATITHHISIAQAN 70 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + + N I +N N P + + S A Sbjct: 71 TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKNGCSRAD 130 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 P + + L Sbjct: 131 L-FPIVTCYYLFCNEVLNWPKAIDEDGQEKTSLKL 164 >gi|190406098|gb|EDV09365.1| RNA exonuclease [Saccharomyces cerevisiae RM11-1a] Length = 269 Score = 43.4 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 25/210 (11%), Positives = 48/210 (22%), Gaps = 12/210 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLCPNGRKNSPEALKLH 63 D E TGLD NDRIIEI + + + + ++ + + Sbjct: 58 IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCI 117 Query: 64 GITDEFLKDKPSFSSIF---SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +S + N G + Sbjct: 118 EHHGNSGLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRLFMVREFPK 177 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I ++ + + H A D M + Sbjct: 178 VIDHLFYRIVDVSSIMEVARRHNPALQA-RNPKKEAAHTAYSDIKESIAQLQWYMDNYLK 236 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 ++ E ++ + + S KR + Sbjct: 237 PPQETESVESIGSEQPESPSSSTSYFKRQR 266 >gi|302877146|ref|YP_003845779.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] gi|307687841|ref|ZP_07630287.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] gi|302580003|gb|ADL54015.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] Length = 205 Score = 43.4 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 8/131 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKL 62 M I FD ETTGL I ++ +++ + F + + S EA+ Sbjct: 1 MNMIFFDTETTGLKPGQ--ICQLSYIKVTTDTKPQKVEGKNFFFSV--EDIEPSAEAIHG 56 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + D S E + I +N FD+ F+ AE R+ + + Sbjct: 57 FSVEDLIELSDGCEFSDLYEEFINDFVDCDLVIGYNVNFDIKFLVAEFYRLGINYIPKMD 116 Query: 123 IIDTLSIARRK 133 Sbjct: 117 FCAMQYYKEIC 127 >gi|72381899|ref|YP_291254.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. NATL2A] gi|72001749|gb|AAZ57551.1| DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. NATL2A] Length = 292 Score = 43.4 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 76/166 (45%), Gaps = 8/166 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++ D ETTGLD++ND +E+G++ S++ Q FL P N+ + Sbjct: 67 NILILDTETTGLDNENDDCLEVGSILFNVKSRSVLAQQSFLLPVEINNAEK----INNIP 122 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P S ++++ + +AHN++FD + L+++ + +D + Sbjct: 123 AEITRLPQPLSEAIKYFESLVRVSNVIVAHNSEFDKKWFG--LKKLPQIEKPWICSMDDI 180 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + +R + L YG+ + + H AL D L++V+I+ Sbjct: 181 TWPADRQLKTRPSVRDLALAYGVPVW--NAHRALTDCIYLAEVFIR 224 >gi|27263219|gb|AAN88025.1| putative oligoribonuclease [Diachasmimorpha longicaudata entomopoxvirus] Length = 206 Score = 43.4 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 12 FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFL 48 D+E TGLD + D I+EIG + T+ F + + Sbjct: 34 LDLEMTGLDPETDNILEIGCFITNDALEITSPIFHMII 71 >gi|292628026|ref|XP_002666829.1| PREDICTED: probable transcription factor PML-like isoform 1 [Danio rerio] gi|326679985|ref|XP_003201423.1| PREDICTED: probable transcription factor PML-like isoform 2 [Danio rerio] Length = 235 Score = 43.0 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 62/224 (27%), Gaps = 19/224 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGLDS + I+++ AV T F V P R S F Sbjct: 13 VFFDLETTGLDS-SCEIVQLAAV---SGGHTFNLFMVPRRPFQRGASRITGFSVKHQRLF 68 Query: 70 LKDKP-----------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 L +P SF S + + ++ R + Sbjct: 69 LHRRPLLTSSLKEALLSFISFLRMLDHPLLLGHNIR-RFDCPVLARALDEFSLRSHFQRE 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---M 175 + + + + H AL D L +Y K+ Sbjct: 128 VSGFVDTLPLARQLLKDHGLQSFKQESLVKNLLGVSYAAHNALEDVQALQKLYWKLKPSA 187 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 Q F + + + + S L IT+E Sbjct: 188 NQIQQHTFTLDSLANPPVNQVQVGASGESGLCERFRKVMDITEE 231 >gi|70732181|ref|YP_261937.1| ribonuclease T [Pseudomonas fluorescens Pf-5] gi|123653314|sp|Q4K746|RNT_PSEF5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|68346480|gb|AAY94086.1| ribonuclease T [Pseudomonas fluorescens Pf-5] Length = 223 Score = 43.0 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 68/193 (35%), Gaps = 13/193 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI A + + T+ + P G AL+ G Sbjct: 31 VVVDVETGGFNSATDALLEIAATTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 90 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HN+ FD+GF+NA + R++ Sbjct: 91 IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 150 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I R H A D+ ++++ ++ Sbjct: 151 RNPFHPFSSFDTATLAGLAYGQTVLAKACQSADIDFDGREAHSARYDTEKTAELFCGIVN 210 Query: 177 GGSQINFGFKTNE 189 Q+ ++ Sbjct: 211 RWKQMGGWQDFDD 223 >gi|242014597|ref|XP_002427973.1| oligoribonuclease, putative [Pediculus humanus corporis] gi|212512472|gb|EEB15235.1| oligoribonuclease, putative [Pediculus humanus corporis] Length = 196 Score = 43.0 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%) Query: 6 KM---RKIVFDIETTGLDSKNDRIIEIGAV 32 KM R I D+E TGL+ + D I+E+ + Sbjct: 17 KMTLDRYIWIDLEMTGLNPETDTILEVACI 46 >gi|26990938|ref|NP_746363.1| exonuclease [Pseudomonas putida KT2440] gi|24985960|gb|AAN69827.1|AE016622_4 exonuclease [Pseudomonas putida KT2440] Length = 183 Score = 43.0 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 5/112 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 +V D+E TT G +IEIGA + + FQ F+ P R +P +L Sbjct: 4 WLVIDLEATTDDGGWPVTEMEVIEIGASLVTREGREVDHFQRFVKPRRRPQLTPFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I+ + F +++ F + + A + D + Sbjct: 64 HISQADVDSAAPFREVWASFERWLGHHRGQLQAWVSWGDYDRQQLHQEWQQY 115 >gi|254373125|ref|ZP_04988614.1| exodeoxyribonuclease I [Francisella tularensis subsp. novicida GA99-3549] gi|151570852|gb|EDN36506.1| exodeoxyribonuclease I [Francisella novicida GA99-3549] Length = 482 Score = 43.0 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 1/132 (0%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71 D+ET+G+++ D++++ A+ F F+ N P A H I+ Sbjct: 11 DLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPMATITHHISIAQAN 70 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + + N I +N N P + + S A Sbjct: 71 TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKNGCSRAD 130 Query: 132 RKHPSSRNDLNS 143 + L Sbjct: 131 LFPIVTCYYLFC 142 >gi|134302180|ref|YP_001122149.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418] gi|134049957|gb|ABO47028.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418] Length = 482 Score = 43.0 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 1/132 (0%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71 D+ET+G+++ D++++ A+ F F+ N P A H I+ Sbjct: 11 DLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPMATITHHISIAQAN 70 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + + N I +N N P + + S A Sbjct: 71 TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKNGCSRAD 130 Query: 132 RKHPSSRNDLNS 143 + L Sbjct: 131 LFPIVTCYYLFC 142 >gi|302879370|ref|YP_003847934.1| Exonuclease RNase T and DNA polymerase III [Gallionella capsiferriformans ES-2] gi|302582159|gb|ADL56170.1| Exonuclease RNase T and DNA polymerase III [Gallionella capsiferriformans ES-2] Length = 181 Score = 43.0 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 45/174 (25%), Gaps = 3/174 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+E TGL+ DRIIE+ V +T V + + T Sbjct: 11 IDMEMTGLNPDTDRIIEVAIVVTDSNLETIAEAPVLVVHQPDSIMDGMDAWNKSTHGKSG 70 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + + + + I +D +R + Sbjct: 71 L---IERVKASTLNEAAVSAQMVAFLKEYVPIRTSPMCGNSICQDRRFMARWMPEFEEYF 127 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + L L +R+ ++ K ++ I+ + + Sbjct: 128 HYRNLDVSTLKELARRWKPDMAKGVKKHGKHEALADIYESIEELKHYREHFIKL 181 >gi|227505999|ref|ZP_03936048.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC 6940] gi|227197281|gb|EEI77329.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC 6940] Length = 526 Score = 43.0 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 19/48 (39%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 + ++TTG+ R++ I A+ + + F + P+ Sbjct: 87 FVALTVQTTGIHPSTARLVAIDALTFNAQGEVGQEFHAVVNPDIDPGP 134 >gi|206603443|gb|EDZ39923.1| DNA polymerase III, epsilon subunit [Leptospirillum sp. Group II '5-way CG'] Length = 265 Score = 43.0 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 9/172 (5%) Query: 7 MRKIVFDIETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+ D+ETTGL DS+ RIIE+G + + + + K++G Sbjct: 1 MKITFLDVETTGLLRDSR-ARIIELGFSTWENGKLLRKN-STLIK-SVDVVPDNISKING 57 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT E LKD P F ++ + F + +AHN FDVG +N EL N+ PL I Sbjct: 58 ITTEMLKDAPGFEDVWKSIKEDFQG--SILVAHNLAFDVGMVNRELILANRIPLGNMGID 115 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + S L + K GI H A+ D L + ++ Sbjct: 116 TLPLSRKMLPELSSYRLGEIAKHMGILNESP--HRAMGDLETLEKILSNLLE 165 >gi|157737359|ref|YP_001490042.1| hypothetical protein Abu_1113 [Arcobacter butzleri RM4018] gi|315637075|ref|ZP_07892298.1| exonuclease superfamily protein [Arcobacter butzleri JV22] gi|157699213|gb|ABV67373.1| hypothetical protein Abu_1113 [Arcobacter butzleri RM4018] gi|315478611|gb|EFU69321.1| exonuclease superfamily protein [Arcobacter butzleri JV22] Length = 171 Score = 43.0 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 7/169 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEALKLHGITD 67 I+ D ET ++ D ++EI AV++ F + S E +L Sbjct: 2 IILDFETN-TNNIGD-VLEIAAVKIDKNFNILDKFHRYYLSRFPLNFYSYEVHRLTPELI 59 Query: 68 EFLKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + ++ E ++ F ++ IAHN F++ IN ++ N + Sbjct: 60 LDYRKDKNYSSYFSEDEDFEKFCYESETLIAHNISFELRHINNRVKFKNCICTMSENK-N 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +++ + L+ C YGI H A D ++ +M Sbjct: 119 IVNVFGKNGRIKNPKLDETCNYYGIEFDASKYHSATYDVTKTYEILKRM 167 >gi|208779832|ref|ZP_03247176.1| exonuclease family protein [Francisella novicida FTG] gi|208744287|gb|EDZ90587.1| exonuclease family protein [Francisella novicida FTG] Length = 482 Score = 43.0 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 1/132 (0%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71 D+ET+G+++ D++++ A+ F F+ N P A H I+ Sbjct: 11 DLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPMATITHHISIAQAN 70 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + + N I +N N P + + S A Sbjct: 71 TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKNGCSRAD 130 Query: 132 RKHPSSRNDLNS 143 + L Sbjct: 131 LFPIVTCYYLFC 142 >gi|118497767|ref|YP_898817.1| exodeoxyribonuclease I [Francisella tularensis subsp. novicida U112] gi|194323739|ref|ZP_03057515.1| exonuclease family protein [Francisella tularensis subsp. novicida FTE] gi|118423673|gb|ABK90063.1| exodeoxyribonuclease I [Francisella novicida U112] gi|194322103|gb|EDX19585.1| exonuclease family protein [Francisella tularensis subsp. novicida FTE] Length = 482 Score = 43.0 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 1/132 (0%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71 D+ET+G+++ D++++ A+ F F+ N P A H I+ Sbjct: 11 DLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPMATITHHISIAQAN 70 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + + N I +N N P + + S A Sbjct: 71 TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKNGCSRAD 130 Query: 132 RKHPSSRNDLNS 143 + L Sbjct: 131 LFPIVTCYYLFC 142 >gi|301604764|ref|XP_002932007.1| PREDICTED: ERI1 exoribonuclease 2 [Xenopus (Silurana) tropicalis] Length = 693 Score = 43.0 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 61/228 (26%), Gaps = 30/228 (13%) Query: 10 IVFDIETT----GLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 I+ D E+T G IIE AV L + + F ++ P S +L Sbjct: 39 IIIDFESTCWKDG-KHSTQEIIEFPAVLLNVANGEIESEFHTYVQPQEHPILSEFCTELT 97 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + + S+F + + E AE + + Sbjct: 98 GIKQLQVDNGVPLKICLSQFNSWIQKLQKEKGIAFVTAVPTHSAAEHKMCAFVTWSDWDL 157 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK-----MMVGG 178 L R+ + + +D ++ + Sbjct: 158 GVCLLYECRR----------------KQMKKPDILNSWIDLRATYKLFYNRRPKGLNGAL 201 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE-ELDEHD 225 + F E + + T + RD +ITK + H Sbjct: 202 QDLGIEFSGREHSGLDDSRNTAKLAWRMIRDGC-VMKITKSLDKVNHK 248 >gi|296273794|ref|YP_003656425.1| exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis DSM 7299] gi|296097968|gb|ADG93918.1| Exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis DSM 7299] Length = 173 Score = 43.0 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 47/174 (27%), Gaps = 14/174 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVF------LCPNGRKNSPEAL 60 I+ D ET +IE AV+L F + + P + Sbjct: 2 IILDFETN--SHNEHDVIEAAAVKLELVNGEYVVCDKFHRYYLSRYPVNPYSYEVHKLTP 59 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + + F F +AHN F++ + + N Sbjct: 60 EAILKIRQNSSYASYFKEDEDFV--EFCSGVETLVAHNISFELRHLRQIVNFKNHICTMK 117 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + L+ +C YGI H A D ++ +M Sbjct: 118 ENK-HIVKALNKNAKIKNPTLDEVCFYYGIEFDENKHHSATYDVSKTFEILKRM 170 >gi|325275518|ref|ZP_08141430.1| exonuclease [Pseudomonas sp. TJI-51] gi|324099350|gb|EGB97284.1| exonuclease [Pseudomonas sp. TJI-51] Length = 183 Score = 43.0 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 5/112 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 +V D+E TT G +IEIGA + + FQ F+ P R +P +L Sbjct: 4 WLVIDLEATTDEGGWPVTEMEVIEIGASLVTREGREVDHFQRFVRPRRRPQLTPFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 I+ + F +++ F + + + A + D + Sbjct: 64 HISQADVDAAAPFREVWASFEHWLGQHREQLQAWVSWGDYDRQQLHQEWHLH 115 >gi|301026596|ref|ZP_07190019.1| exonuclease [Escherichia coli MS 69-1] gi|300395429|gb|EFJ78967.1| exonuclease [Escherichia coli MS 69-1] Length = 220 Score = 43.0 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I++I +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVDIASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEDVIPHYY-----GSEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 >gi|33151672|ref|NP_873025.1| oligoribonuclease [Haemophilus ducreyi 35000HP] gi|38372407|sp|Q7VNN8|ORN_HAEDU RecName: Full=Oligoribonuclease gi|33147893|gb|AAP95414.1| oligoribonuclease [Haemophilus ducreyi 35000HP] Length = 183 Score = 43.0 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD DRIIEI Sbjct: 12 IDLEMTGLDPNQDRIIEIA 30 >gi|90108543|pdb|1YTA|A Chain A, Crystal Structure Of Oligoribonuclease, The Lone Essential Exoribonuclease In Escherichia Coli gi|90108544|pdb|1YTA|B Chain B, Crystal Structure Of Oligoribonuclease, The Lone Essential Exoribonuclease In Escherichia Coli gi|90108545|pdb|1YTA|C Chain C, Crystal Structure Of Oligoribonuclease, The Lone Essential Exoribonuclease In Escherichia Coli gi|90108546|pdb|1YTA|D Chain D, Crystal Structure Of Oligoribonuclease, The Lone Essential Exoribonuclease In Escherichia Coli Length = 180 Score = 43.0 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 10 IDLEXTGLDPERDRIIEIA 28 >gi|329121817|ref|ZP_08250433.1| exonuclease [Dialister micraerophilus DSM 19965] gi|327468090|gb|EGF13578.1| exonuclease [Dialister micraerophilus DSM 19965] Length = 195 Score = 43.0 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 8/176 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ D ET K + +G V T+ + + P E ++++GI Sbjct: 1 MKYTAIDFETA-FWGKGNA-CSLGIVISDGSKLTDEWYD-LIRPVHLNFDEECIRVNGIH 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +KDKP F +++ N AHNA FD G + + R ++ Sbjct: 58 PEDVKDKPEFPYYWNKISGLLNG--TVAFAHNAPFDFGVLANTIDRYELPDINFYWGDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + LN++ + + H AL D+ + ++ + N Sbjct: 116 EISRILWKKLPNHKLNTVAEFLNFEF---NHHQALDDARACEWIVRHALLETNSSN 168 >gi|300933650|ref|ZP_07148906.1| DNA polymerase III subunit epsilon [Corynebacterium resistens DSM 45100] Length = 226 Score = 43.0 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 FD+ETTG D K RI+ + + R Q L G + +A +HGI Sbjct: 16 FDLETTGTDPKTCRIVTSAMISIEGR---ERKDQELLADPGVEIPEQATAVHGI 66 >gi|1019712|gb|AAA98633.1| YNT20 [Saccharomyces cerevisiae] Length = 248 Score = 43.0 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 8/70 (11%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLCPNGRKNSPEALKLH 63 D E TGLD NDRIIEI + + + + ++ + + Sbjct: 58 IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYETVIHYGPEVMNKMNEWCI 117 Query: 64 GITDEFLKDK 73 Sbjct: 118 EHHGNSESHP 127 >gi|57242277|ref|ZP_00370216.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter upsaliensis RM3195] gi|57016957|gb|EAL53739.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter upsaliensis RM3195] Length = 260 Score = 43.0 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 6/164 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIE+TG + +I+EIGAV++ ++ + +R F+ F+ + KL GI + Sbjct: 74 IVDIESTGG-INSGQILEIGAVKIQNHKELDR-FESFVK--VDEIPLNITKLTGIELNMV 129 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD P+ + + F ++ ++AHN KFD FI+ L L +I Sbjct: 130 KDAPNLTRVLEAF--RLFLNDSVFVAHNVKFDYNFISKSLYECGFGILLNRKICTVDFAQ 187 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 S +I HR+ + AL + + K+ Sbjct: 188 CCIQSSHYKLDTLKEILKIESIHHRALNDALAAAEIFKYCLSKL 231 >gi|317402939|gb|EFV83479.1| oligoribonuclease [Achromobacter xylosoxidans C54] Length = 181 Score = 43.0 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 19/28 (67%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAV 32 N+ R + D+E TGLD + +RIIE+ V Sbjct: 4 NENRLVWLDMEMTGLDPEKERIIEVAVV 31 >gi|224096223|ref|XP_002310581.1| predicted protein [Populus trichocarpa] gi|222853484|gb|EEE91031.1| predicted protein [Populus trichocarpa] Length = 231 Score = 43.0 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%) Query: 10 IVFDIETTGLDSKND--RIIEIGAVELLDYSKTN-RTFQVFLCPNG 52 +VFD+ETT + R++E GA+ + ++ + P Sbjct: 15 VVFDLETTVPNRAGQRFRVLEFGAITVCPRKLVELDSYSTLIRPKD 60 >gi|41152197|ref|NP_957038.1| oligoribonuclease, mitochondrial [Danio rerio] gi|37590357|gb|AAH59540.1| Small fragment nuclease [Danio rerio] Length = 199 Score = 43.0 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 1/67 (1%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 M + R + D+E TGLD + D+IIE+ + D + + + + Sbjct: 1 MSQTQAQRMVWVDLEMTGLDIEKDQIIEMACIVTDSDLNVIAEGPNLIINQPDDLLDGMS 60 Query: 60 LKLHGIT 66 Sbjct: 61 DWCKEHH 67 >gi|293604208|ref|ZP_06686616.1| oligoribonuclease [Achromobacter piechaudii ATCC 43553] gi|292817433|gb|EFF76506.1| oligoribonuclease [Achromobacter piechaudii ATCC 43553] Length = 181 Score = 43.0 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 19/28 (67%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAV 32 N+ R + D+E TGLD + +RIIE+ V Sbjct: 4 NENRLVWLDMEMTGLDPEKERIIEVAVV 31 >gi|323360067|ref|YP_004226463.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum StLB037] gi|323276438|dbj|BAJ76583.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum StLB037] Length = 224 Score = 43.0 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%) Query: 11 VFDIETTGLDSKNDRIIE--IGAVELLDYSKTNRTF 44 VFD+ETTG+D NDRI+ +G ++ + R + Sbjct: 3 VFDLETTGVDVVNDRIVTAHVGVLDADGHVIDARDW 38 >gi|302823961|ref|XP_002993628.1| hypothetical protein SELMODRAFT_48207 [Selaginella moellendorffii] gi|300138556|gb|EFJ05320.1| hypothetical protein SELMODRAFT_48207 [Selaginella moellendorffii] Length = 175 Score = 43.0 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 13/98 (13%) Query: 9 KIVF-DIETT-----GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNG-RKNSPEAL 60 +IVF D+ETT G + I+E GAV + +F + P+ SP ++ Sbjct: 1 EIVFYDVETTVPEVKG---QGYEILEFGAVVVSARGLEELDSFTTLVRPSSLALVSPRSV 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98 +GI + L PSF I + W HN Sbjct: 58 SCNGIVQDSLVGAPSFLEIADRVHALLHG--RVWAGHN 93 >gi|288940627|ref|YP_003442867.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum DSM 180] gi|288895999|gb|ADC61835.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum DSM 180] Length = 187 Score = 43.0 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + K++ I D+E TGLD +DRI+EI Sbjct: 6 MSKSEHNLIWIDLEMTGLDPDHDRILEIA 34 >gi|138896523|ref|YP_001126976.1| sporulation inhibitor KapD [Geobacillus thermodenitrificans NG80-2] gi|134268036|gb|ABO68231.1| Sporulation inhibitor KapD [Geobacillus thermodenitrificans NG80-2] Length = 207 Score = 43.0 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 50/191 (26%), Gaps = 19/191 (9%) Query: 9 KIVFDIE-------TT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPE 58 + D E TT G + IIE+G V ++D ++ F ++ P + Sbjct: 7 YLFLDFEFTMPETKTTPNGFSPE---IIEVGLVAVVDEQIVSQ-FSSYVKPLRFPQLTDR 62 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 IT E + SF + S + E+ + + P Sbjct: 63 CKSFLNITQEQIDSGMSFYELVSLLRQYDRERPTTVVTWGNMDMKVLRENCQSARVEFPF 122 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT-----ISHRSKHGALLDSHLLSDVYIK 173 + R ++ L + YG L + K Sbjct: 123 TGEHRDLAMEYKRFFGNKNQTALRKAVQEYGNEGIGKAHCALDDAFTAYTIFRLIENDKK 182 Query: 174 MMVGGSQINFG 184 + G Sbjct: 183 YLAKTKPPTIG 193 >gi|71281793|ref|YP_271594.1| exonuclase [Colwellia psychrerythraea 34H] gi|71147533|gb|AAZ28006.1| exonuclase [Colwellia psychrerythraea 34H] Length = 228 Score = 43.0 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLC 49 D ETTGL++K D+++ +G + L + +T + + Sbjct: 46 AVDFETTGLNAKQDKLLSVGFLTLKKQQMSLKTSYHQIIK 85 >gi|332083162|gb|EGI88393.1| exonuclease family protein [Shigella boydii 5216-82] Length = 181 Score = 43.0 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPELDRIIEIA 29 >gi|312864644|ref|ZP_07724875.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei F0415] gi|311099771|gb|EFQ57984.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei F0415] Length = 823 Score = 43.0 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + V D+E T +II++G V + +T+Q + P+ + L GITD Sbjct: 9 KYAVVDLEATSAS-TTAQIIQVGIVIVEQGQIV-QTYQTDVNPHEALT-QHIIDLTGITD 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 + L P FS + + + + ++AHN KFD Sbjct: 66 QQLAQAPDFSQVAGDIFQLIQD--CIFVAHNVKFDAN 100 >gi|311104954|ref|YP_003977807.1| oligoribonuclease [Achromobacter xylosoxidans A8] gi|310759643|gb|ADP15092.1| oligoribonuclease [Achromobacter xylosoxidans A8] Length = 181 Score = 43.0 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 19/28 (67%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAV 32 N+ R + D+E TGLD + +RIIE+ V Sbjct: 4 NENRLVWLDMEMTGLDPEKERIIEVAVV 31 >gi|167626316|ref|YP_001676816.1| exodeoxyribonuclease I [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596317|gb|ABZ86315.1| Exodeoxyribonuclease I [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 482 Score = 43.0 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 44/167 (26%), Gaps = 4/167 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEA 59 M + + +D ETTG+++ D++++ A+ F F+ N P A Sbjct: 1 MFQNQT--FLFYDSETTGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPIA 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 H I+ S + N I +N N P Sbjct: 59 TITHHISIAQANTGVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPY 118 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + + S A P + + L Sbjct: 119 SHQFKNGCSRADL-FPIVTCYYLFCNDVLKWPKVLDEEGQPKISLKL 164 >gi|227833883|ref|YP_002835590.1| putative oligoribonuclease [Corynebacterium aurimucosum ATCC 700975] gi|227454899|gb|ACP33652.1| putative oligoribonuclease [Corynebacterium aurimucosum ATCC 700975] Length = 210 Score = 43.0 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD K I+E+ AV Sbjct: 10 RLVWIDLEMTGLDPKRHVIVEVAAV 34 >gi|222629868|gb|EEE62000.1| hypothetical protein OsJ_16781 [Oryza sativa Japonica Group] Length = 252 Score = 43.0 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 9/107 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPE 58 +R+ +M + FD+ETT + + ++E GA+ + ++ + P S Sbjct: 1 MRRPEM--VFFDVETTAASADEGQRSVLEFGAIVVCPRRLVEVDSYHTVIRPG--DMSAV 56 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + + + D + PSF + + + W HN + Sbjct: 57 SKRFAAMVDVDVASAPSFDQVAERIFGVLDG--RVWAGHNIQRFDCH 101 >gi|51013461|gb|AAT93024.1| YLR059C [Saccharomyces cerevisiae] Length = 269 Score = 43.0 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 8/63 (12%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLCPNGRKNSPEALKLH 63 D E TGLD NDRIIEI + + + + ++ + + Sbjct: 58 IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCI 117 Query: 64 GIT 66 Sbjct: 118 EHH 120 >gi|153879658|ref|ZP_02004868.1| exonuclease [Beggiatoa sp. PS] gi|152063878|gb|EDN65132.1| exonuclease [Beggiatoa sp. PS] Length = 65 Score = 43.0 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D ETTGLD N I+EI ++ + + + P + E + +HGITD+ +K Sbjct: 2 DTETTGLD-DNAEIVEIAIIDKEERTLI----NQLVKP-TQPIPNEVIGIHGITDDEVKK 55 Query: 73 KPSFSSIFS 81 P+F +++ Sbjct: 56 APTFKTVWP 64 >gi|311894879|dbj|BAJ27287.1| putative exonuclease [Kitasatospora setae KM-6054] Length = 257 Score = 43.0 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 FD ETTG+D + DRI+ V Sbjct: 15 FDTETTGVDVERDRIVSAALV 35 >gi|262184889|ref|ZP_06044310.1| oligoribonuclease [Corynebacterium aurimucosum ATCC 700975] Length = 214 Score = 43.0 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD K I+E+ AV Sbjct: 14 RLVWIDLEMTGLDPKRHVIVEVAAV 38 >gi|217970407|ref|YP_002355641.1| oligoribonuclease [Thauera sp. MZ1T] gi|217507734|gb|ACK54745.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T] Length = 182 Score = 43.0 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ DRIIEI V Sbjct: 11 LDMEMTGLEPDRDRIIEIAIV 31 >gi|297528923|ref|YP_003670198.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp. C56-T3] gi|297252175|gb|ADI25621.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp. C56-T3] Length = 206 Score = 43.0 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 49/188 (26%), Gaps = 13/188 (6%) Query: 9 KIVFDIE-T---TGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALK 61 + D E T T + IIE+G V ++D + F ++ P + Sbjct: 6 YLFLDFEFTMPETKTNPNGFCPEIIEVGLVAVVDDQIIGQ-FSSYVKPLRFPQLTERCKS 64 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 IT E + SF + S + ++ + + + P Sbjct: 65 FLNITQEQIDRGMSFYELVSLLRQYDRDRPTTVMTWGSMDMKVLRENCQSAQVEFPFTGE 124 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-----ISHRSKHGALLDSHLLSDVYIKMMV 176 + R ++ L + YG L + K + Sbjct: 125 HRDLAMEYKRFFGNKNQTALRKAVQEYGNEAVGKAHCALDDAFTAYTIFRLVENDKKYLA 184 Query: 177 GGSQINFG 184 G Sbjct: 185 KTKPPTIG 192 >gi|332678483|gb|AEE87612.1| Exodeoxyribonuclease I [Francisella cf. novicida Fx1] Length = 482 Score = 43.0 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 41/155 (26%), Gaps = 2/155 (1%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71 D+ET+G+++ D++++ A+ F F+ N P A H I+ Sbjct: 11 DLETSGINNSFDQVLQFAAIRTDFDFNEIERFNFFVKLNPDTTPSPMATITHHISIAQAN 70 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + + N I +N N P + + S A Sbjct: 71 TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKNGCSRAD 130 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 P + + L Sbjct: 131 L-FPIVTCYYLFCNEVLNWPKAIDEDGQEKTSLKL 164 >gi|294461520|gb|ADE76321.1| unknown [Picea sitchensis] Length = 436 Score = 43.0 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 52/188 (27%), Gaps = 16/188 (8%) Query: 9 KIVFDIETT---G--LDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKN-SPEAL 60 +V D E T G L + IIE +V + F ++ P + Sbjct: 144 FVVIDFEATCDMGTRLSPQ--EIIEFPSVLVNGMTGRLEG-HFHTYIKPVYHPVLTDFCK 200 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GI + S S ++ E+ + + + + Sbjct: 201 ELTGIQQSQVIGGVSLSEALLMHDNWLEERGVKNTNFAVVTWSDWDCKVMLESECNLKGI 260 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGIT-----ISHRSKHGALLDSHLLSDVYIKMM 175 + K P + C G H L D+ + + + +M Sbjct: 261 RKPNYFNRWINLKLPFYDSFGQLRCNLKGAVEFAGLTWEGRAHSGLDDAKNTARLLLDLM 320 Query: 176 VGGSQINF 183 G ++ Sbjct: 321 RRGIKLTI 328 >gi|194434740|ref|ZP_03066992.1| oligoribonuclease [Shigella dysenteriae 1012] gi|194417021|gb|EDX33138.1| oligoribonuclease [Shigella dysenteriae 1012] gi|320180678|gb|EFW55605.1| 3'-to-5' oligoribonuclease (orn) [Shigella boydii ATCC 9905] gi|332083629|gb|EGI88847.1| exonuclease family protein [Shigella dysenteriae 155-74] Length = 181 Score = 43.0 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 1 MSANENNLIWIDLEMTGLDPELDRIIEIA 29 >gi|304437027|ref|ZP_07396990.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369978|gb|EFM23640.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 180 Score = 43.0 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 8/170 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +VFD ETTG S D ++ + V + + + + P + P+A +++ I+ Sbjct: 4 KVLVFDTETTGFRSD-DEVLTLAVVNGVGETMVDGMYA----PARKAEWPDAERINRISP 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT- 126 + + E FN + + +N +FD+ + RI + + Sbjct: 59 AMVAGCDPILAHREELERLFNAPDTLLVGYNTEFDIRLLAQSGIRITNPNRHDVMLAFSA 118 Query: 127 --LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R+ L Y + HGAL D+ Y KM Sbjct: 119 FRKVPDARRGGYRWWKLTECADYYRYDWGNTVAHGALADTLATLFCYQKM 168 >gi|88703768|ref|ZP_01101484.1| DNA polymerase III, epsilon subunit [Congregibacter litoralis KT71] gi|88702482|gb|EAQ99585.1| DNA polymerase III, epsilon subunit [Congregibacter litoralis KT71] Length = 203 Score = 43.0 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 6/103 (5%) Query: 9 KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 IV D ETTGL +N I+ +G + ++ + ++ + P R S EA +HGIT Sbjct: 18 YIVLDTETTGLPDENGLPDIVTLG-ITVVRQREIAKSVEFKTRPKKR-ISEEAQSIHGIT 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 +E + SF S +S ++ + + HNA FD + Sbjct: 76 NEQAAEFKSFDSQWSHMAEYLKD--QLIVIHNASFDWPILRDH 116 >gi|46105698|ref|XP_380564.1| hypothetical protein FG00388.1 [Gibberella zeae PH-1] Length = 215 Score = 43.0 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 16/57 (28%), Gaps = 2/57 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD ND IIEI + F + + Sbjct: 24 IDCEMTGLDQDNDEIIEIYCIITTGNLEILDEEGFHAIIHFPQSRLDQMDEWCTKTH 80 >gi|311741236|ref|ZP_07715060.1| oligoribonuclease [Corynebacterium pseudogenitalium ATCC 33035] gi|311303406|gb|EFQ79485.1| oligoribonuclease [Corynebacterium pseudogenitalium ATCC 33035] Length = 215 Score = 43.0 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD + I+E+ AV Sbjct: 15 RLVWIDLEMTGLDPERHVIVEVAAV 39 >gi|312092765|ref|XP_003147452.1| exonuclease [Loa loa] gi|307757384|gb|EFO16618.1| exonuclease [Loa loa] Length = 401 Score = 43.0 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 60/230 (26%), Gaps = 22/230 (9%) Query: 9 KIVFDIETTG---LDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLH 63 +V D E T L N IIE A+ + + F ++ P S Sbjct: 150 FVVIDFECTCEADLYDYNHEIIEFPAILVDVRKKEIVDVFHSYVRPLANPQLSEFCSAFT 209 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT E + F + F + + + Sbjct: 210 GITQEMVDKALPFIDVLDSFRAWMQLH---------HLGQKEVRYAFVTDGPWDIAKFFQ 260 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + P ++ + + + + S +L + M G + + Sbjct: 261 MQCIQSKLNPIPHDFRFYVNVRRSFANKYCKKHPTQKINLSRML--TSLNMKFEGREHS- 317 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 ++ + + + R RI E K + + K Sbjct: 318 --GLDDSKNIAKIVIRMLGDKSELRVNEKLVRIKDGEKA---KLLPDMNK 362 >gi|83647672|ref|YP_436107.1| ribonuclease T [Hahella chejuensis KCTC 2396] gi|123531538|sp|Q2SCE2|RNT_HAHCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|83635715|gb|ABC31682.1| ribonuclease T [Hahella chejuensis KCTC 2396] Length = 218 Score = 43.0 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 62/200 (31%), Gaps = 25/200 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +V D+ET G +SK D ++E+ AV + D P P A Sbjct: 22 VVVDVETAGFNSKTDALLEVSAVIISMEDDGMLYPEP------PVSFNVEPFAGANIEQA 75 Query: 67 DEFLKDKPSFSSIFSEFWD----------------FFNEQNAEWIAHNAKFDVGFINAEL 110 F+ + + A + HNA FD F+ A Sbjct: 76 ALEFTGIDPFNPLRDAKPEADALNELFRPIRKSVKSNGCNRAILVGHNATFDHSFLFAAA 135 Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +R + + L+ C+ GI ++ H A D+ +++ Sbjct: 136 ERGDVKRNPFHPFSTFDTATLAALAYGHTVLSRACQLAGIPFDNKEAHSAEYDAMKTAEL 195 Query: 171 YIKMMVGGSQINFGFKTNED 190 + ++ ++ +D Sbjct: 196 FCSIVNRWKELGGWTTDQQD 215 >gi|323143315|ref|ZP_08078006.1| ribonuclease T [Succinatimonas hippei YIT 12066] gi|322416932|gb|EFY07575.1| ribonuclease T [Succinatimonas hippei YIT 12066] Length = 251 Score = 42.6 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 43/164 (26%), Gaps = 17/164 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRK----NSPEALKL 62 +V D+ET G + + D ++E+ + + + +L P+ + Sbjct: 33 VVVDVETAGFNPETDALLEVAMMTMTMDDNG---------YLQPDEIMSANIRPFPNSNI 83 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 FL P F + + G A L N Sbjct: 84 EPSNIAFLGIDP-FDESRNLQDERVAVLPMFKAISKKMKKEGCTRAILVGHNGFFDLSFI 142 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + ++ P + + G+ A + + Sbjct: 143 HALAKRLNYKRCPFHQFTVFDTASLAGLVYGQTVLARACTAAGI 186 >gi|149198226|ref|ZP_01875273.1| oligoribonuclease [Lentisphaera araneosa HTCC2155] gi|149138828|gb|EDM27234.1| oligoribonuclease [Lentisphaera araneosa HTCC2155] Length = 182 Score = 42.6 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 16/55 (29%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 D+E TGLD +RI+EI + F + Sbjct: 7 IDMEMTGLDPDENRILEIAILITDHKLDIIDRFHAVIRTPKAILDGMDEWNTRTH 61 >gi|126334116|ref|XP_001366655.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 696 Score = 42.6 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 61/219 (27%), Gaps = 26/219 (11%) Query: 10 IVFDIETT----GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGR----KNSPEAL 60 I+ D E+T G + IIE AV L + FQ ++ P K E Sbjct: 39 IIIDFESTCWNDGKHHYSQEIIEFPAVLLNTLTGEIESEFQTYVQPEEHPILSKFCIELT 98 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + + S F ++ +Q A + + + D Sbjct: 99 GIKQAQVDEGVPLKICLSQFCKWIHLIQQQKKITFAPSITNNSASEVKSCAFVTWSDWDL 158 Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ + + P N L Y + + K + Sbjct: 159 GVCLEYECRRKQLRKPIFLNSWIDLRATYKLFYRRKPKG---------------LSGALQ 203 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 ++ F E + + T + RD +ITK Sbjct: 204 ELGIEFSGREHSGLDDSRNTAHLAWRMIRDGC-IMKITK 241 >gi|241205541|ref|YP_002976637.1| exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859431|gb|ACS57098.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 199 Score = 42.6 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 5/149 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + I D ET + + +G + D T R + + P + S + +HGI Sbjct: 5 KTIAIDFET--ANEQRGSACSVGLAWIEDGRVT-RVEERLIRPREMRFSGMNIAIHGIRP 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++D P F + EF + + AHNA FD A L + + + + Sbjct: 62 EHVEDAPEFPEVMDEFHEDISGATMI--AHNAAFDFSVWRASLDLYRQSYPELTYLCSLK 119 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRS 156 R + LN + + G+ H + Sbjct: 120 MAQRIWPHFLSHRLNLIAEHLGLRFVHHN 148 >gi|227503970|ref|ZP_03934019.1| oligoribonuclease [Corynebacterium striatum ATCC 6940] gi|227199438|gb|EEI79486.1| oligoribonuclease [Corynebacterium striatum ATCC 6940] Length = 210 Score = 42.6 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNR 42 R + D+E TGLD K I+E+ A+ + + Sbjct: 10 RLVWIDLEMTGLDPKRHVIVEVAAIITDGNLNVIGE 45 >gi|6323088|ref|NP_013160.1| Rex2p [Saccharomyces cerevisiae S288c] gi|1730818|sp|P54964|ORN_YEAST RecName: Full=Oligoribonuclease, mitochondrial; Flags: Precursor gi|1181280|emb|CAA64306.1| Ynt20 protein [Saccharomyces cerevisiae] gi|1360404|emb|CAA97590.1| YNT20 [Saccharomyces cerevisiae] gi|285813481|tpg|DAA09377.1| TPA: Rex2p [Saccharomyces cerevisiae S288c] Length = 269 Score = 42.6 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 8/63 (12%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLCPNGRKNSPEALKLH 63 D E TGLD NDRIIEI + + + + ++ + + Sbjct: 58 IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCI 117 Query: 64 GIT 66 Sbjct: 118 EHH 120 >gi|313892527|ref|ZP_07826115.1| exonuclease [Dialister microaerophilus UPII 345-E] gi|313119055|gb|EFR42259.1| exonuclease [Dialister microaerophilus UPII 345-E] Length = 195 Score = 42.6 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 5/150 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ D ET K + +G V T+ + + P E ++++GI Sbjct: 1 MKYTAIDFETA-FWGKGNA-CSLGIVISDGSKLTDEWYD-LIRPVHLNFDEECIRVNGIH 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +KDKP F + + N AHNA FD G + + R ++ Sbjct: 58 PEDVKDKPEFPYYWDKISGLLNG--TVAFAHNAPFDFGVLANTIDRYELPDINFCWGDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156 + LN++ + +H Sbjct: 116 EISRILWKKLPNHKLNTVAEFLNFEFNHHQ 145 >gi|53805219|ref|YP_113058.1| oligoribonuclease [Methylococcus capsulatus str. Bath] gi|59798004|sp|Q60BD8|ORN_METCA RecName: Full=Oligoribonuclease gi|53758980|gb|AAU93271.1| oligoribonuclease [Methylococcus capsulatus str. Bath] Length = 181 Score = 42.6 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 15/25 (60%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD 36 D+E TGLD +ND IIEI + Sbjct: 11 IDLEMTGLDPQNDAIIEIATIVTDG 35 >gi|315652211|ref|ZP_07905206.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315485517|gb|EFU75904.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 339 Score = 42.6 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 45/184 (24%), Gaps = 17/184 (9%) Query: 8 RKIVFDIE----TTGL-DSKND---RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 IV D+E G S D IIEIGA++L +T F + P K Sbjct: 11 NYIVLDLEWNQSPNGREHSNKDLPFEIIEIGAIKLNSRLETVDEFHRVIKPTVYKKIHFK 70 Query: 60 LKL---------HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 + F+ F + W + + Sbjct: 71 VHEVVQIGIWELKKKGVPFVDAINDFFEFCEMDNKQKKKILCTWGNLDLVELQRNMKFYN 130 Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + + L + ++ R H A D+ V Sbjct: 131 VENKFEYPFFYYDLQKLFNIKFQNAQQERIPLERAVNMLNIEVERPFHHAFDDACYTVKV 190 Query: 171 YIKM 174 +M Sbjct: 191 MQRM 194 >gi|227503021|ref|ZP_03933070.1| oligoribonuclease [Corynebacterium accolens ATCC 49725] gi|227076082|gb|EEI14045.1| oligoribonuclease [Corynebacterium accolens ATCC 49725] Length = 213 Score = 42.6 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD + I+E+ AV Sbjct: 15 RLVWIDLEMTGLDPERHVIVEVAAV 39 >gi|51245369|ref|YP_065253.1| hypothetical protein DP1517 [Desulfotalea psychrophila LSv54] gi|50876406|emb|CAG36246.1| unknown protein [Desulfotalea psychrophila LSv54] Length = 188 Score = 42.6 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 49/158 (31%), Gaps = 7/158 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC----PNGRKNSP--EALKLH 63 + DIETT + I+E+G V L + T F + P K Sbjct: 7 IIDIETTNFLKEGGSIVEVGMVALDLESGVTKIIFDSLCREKILTGRHREPPFGWIFKNS 66 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 +T E +++ P F S+ +E N A+N FD F+ + K P + Sbjct: 67 DLTVEEVREAPDFDSLRAEIQSIINAYPLGATAYNRSFDFDFLESRSLSFPKKLPCPMLL 126 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 + + + + + Sbjct: 127 CTDICKIPSPYRYKDYKWPKVEEAWDYFFPDHPYDEKH 164 >gi|167842269|ref|ZP_02468953.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia thailandensis MSMB43] Length = 292 Score = 42.6 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 6/83 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D ETTGLD + I+EI ++ + P +A +HGITD + Sbjct: 131 FIDTETTGLDFQ-AEIVEIAILDRAGALL----LDTLVKP-AMPIPADATAIHGITDAHV 184 Query: 71 KDKPSFSSIFSEFWDFFNEQNAE 93 P ++S+ + + + Sbjct: 185 AGAPGWASVGPQVAELLAGRLWI 207 >gi|124268531|ref|YP_001022535.1| exonuclease [Methylibium petroleiphilum PM1] gi|124261306|gb|ABM96300.1| exonuclease [Methylibium petroleiphilum PM1] Length = 233 Score = 42.6 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 61/180 (33%), Gaps = 15/180 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL------------LDYSKTNRTFQVFLCPNGRKN 55 R IV D+E+ GLD + D ++ I AV + F++ L P+G + Sbjct: 27 RWIVADVESGGLDPRRDPLLAIAAVGVHFAPVQGERGGRRPRIVLGDRFELLLRPSGAPS 86 Query: 56 -SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 SP+ + + + + + ++ FD I + Sbjct: 87 ASPDKANILVHGIGIGAQRAGLDPAEALQAWESYIGRSPLVGFHSAFDRTLIERAGRDAL 146 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D + A + L+ +GIT ++H A D+ + + +K+ Sbjct: 147 GRAPDNPWLDLEHLAAVLHREPRQRSLDDWLAHHGITC--LARHQASADALATAQLLLKL 204 >gi|295840123|ref|ZP_06827056.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] gi|197696983|gb|EDY43916.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] Length = 243 Score = 42.6 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 + +K R FDIE+TG+D + RI+ V + T P+ Sbjct: 1 MTWHKQRYCAFDIESTGVDVETARIVT-ACVAQVRGGALPETRSWLADPSIEIPDE 55 >gi|729197|sp|P41060|CP81_BP186 RecName: Full=Uncharacterized exonuclease CP81 gi|3337284|gb|AAC34183.1| Orf81 [Enterobacteria phage 186] Length = 194 Score = 42.6 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 48/144 (33%), Gaps = 12/144 (8%) Query: 10 IVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 I D ETTGL D I+EI ++ + + P + EA +HGITD Sbjct: 21 IFIDTETTGL---GDDAEIVEICLIDSAGFIM----LNTLVKP-TKPIPAEATAIHGITD 72 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + P++ I F E +NA +D I + + ++ Sbjct: 73 EMVMYAPTWKDIHGAVASLFFEYGFV--IYNADYDTRLIYQTAKLYGLENDGFCYFLNER 130 Query: 128 SIARRKHPSSRNDLNSLCKRYGIT 151 S + K Y Sbjct: 131 SACAMMLYAEYRGEPGRFKGYKWH 154 >gi|269123524|ref|YP_003306101.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus moniliformis DSM 12112] gi|268314850|gb|ACZ01224.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus moniliformis DSM 12112] Length = 205 Score = 42.6 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 18/195 (9%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT------NRTFQVFLCPNGRK 54 MI+ + I FD+ET G++ D ++ I A+++ + T + + G + Sbjct: 1 MIK----KVIFFDVETNGVNP-TDSVLSISAMKVTYDTITNKMVKLGEFDRFYFRNEGEE 55 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 + +AL ++G+ D+ ++ + + S I + N NA+ V ++ Sbjct: 56 PNFDALNVNGLFDDEIERRRNLSLIKYAKTFNEDIVNFFEFCDNAEHFVAHNIRFDRQFI 115 Query: 115 KDPLDPSRIIDTLSIARRKHP-------SSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 L +I K P L Y I + H ++ D ++ Sbjct: 116 PFKLKYQFDTMLENIDIVKIPSNSYYSSFKWPKLMECANYYNIPVDENELHNSMYDVVIM 175 Query: 168 SDVYIKMMVGGSQIN 182 V KM+ + Sbjct: 176 GRVMFKMLKDNEGLK 190 >gi|255324289|ref|ZP_05365410.1| oligoribonuclease [Corynebacterium tuberculostearicum SK141] gi|255298619|gb|EET77915.1| oligoribonuclease [Corynebacterium tuberculostearicum SK141] Length = 215 Score = 42.6 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD + I+E+ AV Sbjct: 15 RLVWIDLEMTGLDPERHVIVEVAAV 39 >gi|229588692|ref|YP_002870811.1| ribonuclease T [Pseudomonas fluorescens SBW25] gi|229360558|emb|CAY47415.1| ribonuclease T [Pseudomonas fluorescens SBW25] Length = 223 Score = 42.6 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 66/193 (34%), Gaps = 13/193 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVF-LCP-NGRKNSPEALKLHG 64 +V D+ET G + D ++EI A + F + P G AL+ G Sbjct: 31 VVIDVETGGFNCATDALLEIAATTIGMDEQGFVFPEHTHFFRVEPFEGANIEAAALEFTG 90 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HN+ FD+GF+NA + R++ Sbjct: 91 IKLDHPLRMAVSEEAALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 150 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI R H A D+ ++++ ++ Sbjct: 151 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 210 Query: 177 GGSQINFGFKTNE 189 Q+ N+ Sbjct: 211 RWKQMGGWEDFND 223 >gi|332638341|ref|ZP_08417204.1| DNA polymerase III subunit alpha [Weissella cibaria KACC 11862] Length = 183 Score = 42.6 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEALKLHGIT 66 +VFD+E G +++IIEIGA+++ + F V + P G + + Sbjct: 9 YVVFDLEMNG----SNQIIEIGALKITTGKDIEK-FSVIVNNPPKGSGMASFKFISQSMG 63 Query: 67 DEFLK 71 E Sbjct: 64 GEHGW 68 >gi|290477090|ref|YP_003470002.1| oligoribonuclease [Xenorhabdus bovienii SS-2004] gi|289176435|emb|CBJ83244.1| oligoribonuclease [Xenorhabdus bovienii SS-2004] Length = 181 Score = 42.6 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ + DRIIEI Sbjct: 11 IDLEMTGLEPERDRIIEIA 29 >gi|227484960|ref|ZP_03915276.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227237115|gb|EEI87130.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 302 Score = 42.6 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 23/29 (79%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDY 37 ++V DIETTGLD +ND+++ +G V++ + Sbjct: 17 ELVLDIETTGLDFRNDKLVLLGLVKIEND 45 >gi|218288682|ref|ZP_03492945.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius LAA1] gi|218241040|gb|EED08216.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius LAA1] Length = 218 Score = 42.6 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61 V D+ET+G D+I+ + S+ + +F + + + P + Sbjct: 32 VLDLETSGFSPARDKILSVACATFSGWSSEPDESFYAVVRHDDVADVPSHIW 83 >gi|254369135|ref|ZP_04985147.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica FSC022] gi|157122085|gb|EDO66225.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica FSC022] Length = 482 Score = 42.6 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 1/132 (0%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71 D+ET+G+++ D++++ A+ F F+ N P A H I+ Sbjct: 11 DLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPMATITHHISIAQAN 70 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + + N I +N + N P + + S A Sbjct: 71 TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDELLRFAFYKNMLPPYSHQFKNGCSRAD 130 Query: 132 RKHPSSRNDLNS 143 + L Sbjct: 131 LFPIVTCYYLFC 142 >gi|330811344|ref|YP_004355806.1| ribonuclease T [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379452|gb|AEA70802.1| Ribonuclease T [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 225 Score = 42.6 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 13/193 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI A + + + T+ + P G AL+ G Sbjct: 33 VVVDVETGGFNSATDALLEIAATTIGMDEKGFVFPDHTYFFRVEPFEGANVEAAALEFTG 92 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HN+ FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 152 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ I R H A D+ ++++ ++ Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAADIDFDGREAHSARYDTEKTAELFCGIVN 212 Query: 177 GGSQINFGFKTNE 189 ++ ++ Sbjct: 213 RWKEMGGWQDFDD 225 >gi|295698795|ref|YP_003603449.1| p12-11p [Pyrococcus sp. 12/1] gi|295126590|gb|ADF80218.1| p12-11p [Pyrococcus sp. 12/1] Length = 195 Score = 42.6 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 20/37 (54%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44 ++ V D+ETTGL+ + D I+ G + + R F Sbjct: 42 KEAVLDLETTGLEPEWDEILSFGIAKDHEIKVYTRVF 78 >gi|240169372|ref|ZP_04748031.1| hypothetical protein MkanA1_08668 [Mycobacterium kansasii ATCC 12478] Length = 1746 Score = 42.6 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 15/29 (51%), Positives = 17/29 (58%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLD 36 R V DIETTGLDS D + E+ V L Sbjct: 103 RIAVLDIETTGLDSAADFVCELALVGLDG 131 >gi|226326657|ref|ZP_03802175.1| hypothetical protein PROPEN_00510 [Proteus penneri ATCC 35198] gi|225204878|gb|EEG87232.1| hypothetical protein PROPEN_00510 [Proteus penneri ATCC 35198] Length = 181 Score = 42.6 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DRIIEI Sbjct: 11 IDLEMTGLDPECDRIIEIA 29 >gi|306836747|ref|ZP_07469709.1| oligoribonuclease [Corynebacterium accolens ATCC 49726] gi|304567369|gb|EFM42972.1| oligoribonuclease [Corynebacterium accolens ATCC 49726] Length = 213 Score = 42.6 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD + I+E+ AV Sbjct: 15 RLVWIDLEMTGLDPERHVIVEVAAV 39 >gi|256370678|ref|YP_003108503.1| putative bifunctional DNA polymerase III subunit alpha/DNA polymerase III subunit epsilon [Candidatus Sulcia muelleri SMDSEM] gi|256009470|gb|ACU52830.1| putative bifunctional DNA polymerase III, alpha subunit (DnaE)/DNA polymerase III, epsilon subunit (DnaQ) [Candidatus Sulcia muelleri SMDSEM] Length = 1406 Score = 42.6 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 83/253 (32%), Gaps = 25/253 (9%) Query: 9 KIVFDIETTGLDSKND-------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I+FD ETTGL + R++ + + K + P G + + K Sbjct: 2 YIIFDTETTGLPKNYNAPIINWPRLVRLSWCLYDENLKLIELKDYIIKPEGFEIPFNSTK 61 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI+ E +K + E ++ + + I HN FD+ + AE R+ K Sbjct: 62 IHGISTEEALEKGYKRNFVLEKFNIRIKNSKFLIGHNIYFDLKVLCAEFIRLKKIHYLYK 121 Query: 122 RIIDTLSIARRKHPSSRN-----DLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMM 175 + I + + +L + Y H + D S + +++ Sbjct: 122 KKIIDTKEKSINFCAIKIGKGKLKWPTLTELYKKLFNDTFIAHDSKSDVLATSKCFFELL 181 Query: 176 VGG----SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT---- 227 G +N + K N L +K LF + + H Sbjct: 182 RIGIISLKNVNKKLLKINIKKINLSKIQNFNFKKLNFEKKLFKKKYFSHIHNHTYFSILS 241 Query: 228 ----IQTLGKNAI 236 I +L K I Sbjct: 242 STIDINSLIKKTI 254 >gi|227503895|ref|ZP_03933944.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC 6940] gi|227199518|gb|EEI79566.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC 6940] Length = 223 Score = 42.6 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 17/36 (47%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT 43 R + FD+ETT ++ K RI+ V + R Sbjct: 7 RMLSFDLETTSVNPKEARIVTSALVRIDGRDVDKRE 42 >gi|261420373|ref|YP_003254055.1| sporulation inhibitor KapD [Geobacillus sp. Y412MC61] gi|319768041|ref|YP_004133542.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp. Y412MC52] gi|261376830|gb|ACX79573.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp. Y412MC61] gi|317112907|gb|ADU95399.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp. Y412MC52] Length = 206 Score = 42.6 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 49/188 (26%), Gaps = 13/188 (6%) Query: 9 KIVFDIE-T---TGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALK 61 + D E T T + IIE+G V ++D + F ++ P + Sbjct: 6 YLFLDFEFTMPETKTNPNGFCPEIIEVGLVAVVDDQIIGQ-FSSYVKPLRFPQLTERCKS 64 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 IT E + SF + S + ++ + + + P Sbjct: 65 FLNITQEQIDRGMSFYELVSLLRQYDRDRPTTVMTWGSMDMKVLRENCQSARVEFPFTGE 124 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-----ISHRSKHGALLDSHLLSDVYIKMMV 176 + R ++ L + YG L + K + Sbjct: 125 HRDLAMEYKRFFGNKNQTALRKAVQEYGNEAVGKAHCALDDAFTAYTIFRLVENDKKYLA 184 Query: 177 GGSQINFG 184 G Sbjct: 185 KTKPPTIG 192 >gi|254386752|ref|ZP_05002044.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] gi|194345589|gb|EDX26555.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] Length = 246 Score = 42.6 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 15/31 (48%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 FD+ETTG + RI+ VE+ R Sbjct: 12 FDLETTGTEPGESRIVTAAVVEVRGGEVRER 42 >gi|151941228|gb|EDN59606.1| RNA exonuclease [Saccharomyces cerevisiae YJM789] gi|259148048|emb|CAY81297.1| Rex2p [Saccharomyces cerevisiae EC1118] Length = 269 Score = 42.6 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 8/63 (12%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLCPNGRKNSPEALKLH 63 D E TGLD NDRIIEI + + + + ++ + + Sbjct: 58 IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCI 117 Query: 64 GIT 66 Sbjct: 118 EHH 120 >gi|285018424|ref|YP_003376135.1| oligoribonuclease [Xanthomonas albilineans GPE PC73] gi|283473642|emb|CBA16145.1| probable oligoribonuclease protein [Xanthomonas albilineans] Length = 190 Score = 42.6 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 41/137 (29%), Gaps = 13/137 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I D+E TGLD++ D IIEI V T+ V PE H + Sbjct: 10 RLIWIDLEMTGLDTERDSIIEIATV------VTDAQLNVL------AEGPEFAIAHPLQT 57 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 D+ + + + +A + F+ + + I Sbjct: 58 LEAMDEWNRNQHRQSGLWQRVLDSQVGLAQAEAQTMAFLTQWCKPGASPM-CGNSICQDR 116 Query: 128 SIARRKHPSSRNDLNSL 144 R+ P + Sbjct: 117 RFLHRQMPRLERFFHYR 133 >gi|297733948|emb|CBI15195.3| unnamed protein product [Vitis vinifera] Length = 447 Score = 42.6 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 12/95 (12%) Query: 11 VFDIETT-----GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRK-NSPEALKLH 63 FD+ETT G + I+E GA+ + ++ + P+ S +++ + Sbjct: 12 FFDVETTVPTRVG---QGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLVSSLSVRCN 68 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98 GIT + + P+F I +D + W HN Sbjct: 69 GITRDAVVSAPNFRDIADRVYDILHG--RIWAGHN 101 >gi|225457353|ref|XP_002281793.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 497 Score = 42.6 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 12/95 (12%) Query: 11 VFDIETT-----GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRK-NSPEALKLH 63 FD+ETT G + I+E GA+ + ++ + P+ S +++ + Sbjct: 12 FFDVETTVPTRVG---QGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLVSSLSVRCN 68 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98 GIT + + P+F I +D + W HN Sbjct: 69 GITRDAVVSAPNFRDIADRVYDILHG--RIWAGHN 101 >gi|147817752|emb|CAN66660.1| hypothetical protein VITISV_031720 [Vitis vinifera] Length = 535 Score = 42.6 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 12/95 (12%) Query: 11 VFDIETT-----GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRK-NSPEALKLH 63 FD+ETT G + I+E GA+ + ++ + P+ S +++ + Sbjct: 12 FFDVETTVPTRVG---QGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLVSSLSVRCN 68 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98 GIT + + P+F I +D + W HN Sbjct: 69 GITRDAVVSAPNFRDIADRVYDILHG--RIWAGHN 101 >gi|89256131|ref|YP_513493.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica LVS] gi|115314604|ref|YP_763327.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica OSU18] gi|156502153|ref|YP_001428218.1| exonuclease [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009834|ref|ZP_02274765.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica FSC200] gi|254367455|ref|ZP_04983481.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica 257] gi|290953267|ref|ZP_06557888.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica URFT1] gi|295313509|ref|ZP_06804104.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica URFT1] gi|89143962|emb|CAJ79183.1| Exodeoxyribonuclease I [Francisella tularensis subsp. holarctica LVS] gi|115129503|gb|ABI82690.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica OSU18] gi|134253271|gb|EBA52365.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica 257] gi|156252756|gb|ABU61262.1| exonuclease [Francisella tularensis subsp. holarctica FTNF002-00] Length = 482 Score = 42.6 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 1/132 (0%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71 D+ET+G+++ D++++ A+ F F+ N P A H I+ Sbjct: 11 DLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTPSPMATITHHISIAQAN 70 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + + N I +N + N P + + S A Sbjct: 71 TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDELLRFAFYKNMLPPYSHQFKNGCSRAD 130 Query: 132 RKHPSSRNDLNS 143 + L Sbjct: 131 LFPIVTCYYLFC 142 >gi|227488247|ref|ZP_03918563.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51867] gi|227091817|gb|EEI27129.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51867] Length = 203 Score = 42.6 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 + R + D+E TGLD K I+E AV + D T Sbjct: 1 MSNKDNRIVWIDLEMTGLDPKRHVIVE-AAVHITDNDLT 38 >gi|310831493|ref|YP_003970136.1| putative helicase/exonuclease [Cafeteria roenbergensis virus BV-PW1] gi|309386677|gb|ADO67537.1| putative helicase/exonuclease [Cafeteria roenbergensis virus BV-PW1] Length = 870 Score = 42.6 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 58/177 (32%), Gaps = 17/177 (9%) Query: 11 VFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 + D ETTGL + N R+IE+G + + + + N + N Sbjct: 691 ILDTETTGLPKQRPFNPNNTSAYDNARMIELGYIIYNTKGDIIKKYNNLINHNIKIN--- 747 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 +HGIT + K + + ++ + HN FD + E+ RI K L Sbjct: 748 NSFIHGITSDICSKKGLIIDDVLDTFYQDLKECDVLVCHNVDFDKNILLNEIYRIKKMEL 807 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY--GITISHRSKHGALLDSHLLSDVYIK 173 + +K L Y + H AL D + + K Sbjct: 808 YEHLNNKSTICTLKKTKELYGKRTKLSDWYKKNFNDNTIQNHRALDDVIMTGKCFFK 864 >gi|115351259|ref|YP_773098.1| exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria AMMD] gi|115281247|gb|ABI86764.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria AMMD] Length = 276 Score = 42.6 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 56/220 (25%), Gaps = 20/220 (9%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGA--VELLDY-----SKTNRTFQVFLCPNGRKNSPE 58 M+ + D ETTG+ + +D I IG VE+ + R + P + Sbjct: 19 HMKVAIIDTETTGV-AAHDEPISIGILLVEIEPGSGVLVQEIGR-YHGLREPCVPIHPKA 76 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL------QR 112 + + + + IAHNA+FD + Sbjct: 77 QAVHGMTAADLSGK-----VLDLAWITSLINEADVLIAHNAQFDARMLAVVCDAGSAKSW 131 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P G + + S Y+ Sbjct: 132 RCSLQQFPWPAAVGRKKLDSVCEFYGVVKQLRHDALGDCQALLAVLLIHTGKTTRSRTYL 191 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 +++ + + + P +L+ +P+ Sbjct: 192 ALLLAKAPVVLDAAPQAAMGRSPAYQQPPAYRMLEPRQPV 231 >gi|256271847|gb|EEU06877.1| Rex2p [Saccharomyces cerevisiae JAY291] Length = 269 Score = 42.6 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 15/26 (57%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37 D E TGLD NDRIIEI + + Sbjct: 58 IDCEMTGLDHVNDRIIEICCIITDGH 83 >gi|221132558|ref|XP_002167097.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 287 Score = 42.6 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 11/187 (5%) Query: 9 KIVFDIETTGLDSK----NDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKL 62 +V D E T + IIE AV + + + F + P S L Sbjct: 97 YVVIDFEATCDEPNPSGFQHEIIEFPAVLVKTSTLEIVSEFHSYCRPVINPVLSEFCKSL 156 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-----AKFDVGFINAELQRINKDP 117 GIT ++ F + F + +Q F+ + + +N Sbjct: 157 TGITQVQVESSSVFEVVLQRFDKWLKQQVMPTETFCIATDGPWDLDRFLKNQCKTLNIQI 216 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + L ++ H + D+ ++ + I+++ Sbjct: 217 PHYFHRWVNIRKHFYNYYKINQANVELMLQHLGMEFEGRPHRGIDDARNIARILIQLIRD 276 Query: 178 GSQINFG 184 G+ Sbjct: 277 GADPLIN 283 >gi|116333325|ref|YP_794852.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus brevis ATCC 367] gi|116098672|gb|ABJ63821.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus brevis ATCC 367] Length = 178 Score = 42.6 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 5/165 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET K + + + + F + P+ +++HGI Sbjct: 1 MNFVAMDFET--ASGKRYSACSLALTIVRNDQVVDE-FYSLIKPDT-DFFWRNVQIHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + P+F + F +++ IAHNA FD G + + L+ N P + Sbjct: 57 ERDVANAPTF-PEVWQHVAPFFQRDRLVIAHNAPFDNGVLRSSLEHYNLPPARYLTLDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + + L+++C I + H + +Y Sbjct: 116 KTSRKFFPEFPNHKLDTVCDELDIDLHHHHNALDDSLACANILLY 160 >gi|33519554|ref|NP_878386.1| oligoribonuclease [Candidatus Blochmannia floridanus] gi|77416670|sp|Q7VQP7|ORN_BLOFL RecName: Full=Oligoribonuclease gi|33517217|emb|CAD83599.1| oligoribonuclease [Candidatus Blochmannia floridanus] Length = 180 Score = 42.6 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ + DRI+EI Sbjct: 9 IDLEMTGLNPERDRILEIA 27 >gi|242086513|ref|XP_002439089.1| hypothetical protein SORBIDRAFT_09g000300 [Sorghum bicolor] gi|241944374|gb|EES17519.1| hypothetical protein SORBIDRAFT_09g000300 [Sorghum bicolor] Length = 319 Score = 42.6 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%) Query: 7 MRKIVF-DIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNG 52 MR+IVF D+ETT R ++E GA+ + ++ + P Sbjct: 8 MREIVFFDVETTAPTPAG-RWWLLEFGAILVCPRKLVEVASYDTLIRPGD 56 >gi|78777984|ref|YP_394299.1| exonuclease [Sulfurimonas denitrificans DSM 1251] gi|78498524|gb|ABB45064.1| Exonuclease [Sulfurimonas denitrificans DSM 1251] Length = 247 Score = 42.6 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTF 44 R I+ D ETTG+ + DR+I++G + L + + F Sbjct: 4 RYIILDTETTGIG-EEDRVIQLGFIVLGEREIEVQNEF 40 >gi|56421469|ref|YP_148787.1| sporulation inhibitor KapD [Geobacillus kaustophilus HTA426] gi|56381311|dbj|BAD77219.1| inhibition of the KinA pathway to sporulation [Geobacillus kaustophilus HTA426] Length = 206 Score = 42.6 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 49/188 (26%), Gaps = 13/188 (6%) Query: 9 KIVFDIE-T---TGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALK 61 + D E T T + IIE+G V ++D + F ++ P + Sbjct: 6 YLFLDFEFTMPETKTNPNGFCPEIIEVGLVAVVDDQIIGQ-FSSYVKPLRFPQLTERCKS 64 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 IT E + SF + S + E+ + + + P Sbjct: 65 FLNITQEQIDRGMSFYELVSLLRQYDRERPTTVMTWGSMDMKVLRENCQSAQVEFPFTGE 124 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-----ISHRSKHGALLDSHLLSDVYIKMMV 176 + R ++ L + YG L + K + Sbjct: 125 HRDLAMEYKRFFGNKNQTALRKAVQEYGNEAVGKAHCALDDAFTAYTIFRLVENDKKYLA 184 Query: 177 GGSQINFG 184 G Sbjct: 185 KTKPPTIG 192 >gi|323347541|gb|EGA81809.1| Rex2p [Saccharomyces cerevisiae Lalvin QA23] Length = 217 Score = 42.6 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 15/26 (57%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37 D E TGLD NDRIIEI + + Sbjct: 58 IDCEMTGLDHVNDRIIEICCIITDGH 83 >gi|229821534|ref|YP_002883060.1| Exonuclease RNase T and DNA polymerase III [Beutenbergia cavernae DSM 12333] gi|229567447|gb|ACQ81298.1| Exonuclease RNase T and DNA polymerase III [Beutenbergia cavernae DSM 12333] Length = 283 Score = 42.6 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 5/51 (9%) Query: 6 KMRK-----IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 MR + FD ETTG+D +DRI+ V + + P Sbjct: 4 HMRWTDGPLVGFDTETTGVDVAHDRIVTAALVVRHGLQGLPQERTWIIDPG 54 >gi|315656881|ref|ZP_07909768.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492836|gb|EFU82440.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 240 Score = 42.6 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 FD ETTG+ + DRI + + ++ + + R + + P Sbjct: 19 FDTETTGVFTSRDRIATVSLIRRINGTDSPRYW--IINPGVPMPPA 62 >gi|315655203|ref|ZP_07908104.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] gi|315490458|gb|EFU80082.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] Length = 240 Score = 42.6 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 FD ETTG+ + DRI + + ++ + + R + + P Sbjct: 19 FDTETTGVFTSRDRIATVSLIRRINGTDSPRYW--IINPGVPMPPA 62 >gi|304389634|ref|ZP_07371596.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327187|gb|EFL94423.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 240 Score = 42.6 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 FD ETTG+ + DRI + + ++ + + R + + P Sbjct: 19 FDTETTGVFTSRDRIATVSLIRRINGTDSPRYW--IINPGVPMPPA 62 >gi|298346657|ref|YP_003719344.1| DNA polymerase III subunit epsilon [Mobiluncus curtisii ATCC 43063] gi|298236718|gb|ADI67850.1| DNA polymerase III subunit epsilon [Mobiluncus curtisii ATCC 43063] Length = 240 Score = 42.6 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 FD ETTG+ + DRI + + ++ + + R + + P Sbjct: 19 FDTETTGVFTSRDRIATVSLIRRINGTDSPRYW--IINPGVPMPPA 62 >gi|227542846|ref|ZP_03972895.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51866] gi|227181351|gb|EEI62323.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51866] Length = 203 Score = 42.6 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 + R + D+E TGLD K I+E AV + D T Sbjct: 1 MSNKDNRIVWIDLEMTGLDPKRHVIVE-AAVHITDNDLT 38 >gi|256371657|ref|YP_003109481.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium ferrooxidans DSM 10331] gi|256008241|gb|ACU53808.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium ferrooxidans DSM 10331] Length = 188 Score = 42.6 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 17/28 (60%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKT 40 D+E TGLD + I+EI A+ D +T Sbjct: 6 DLEMTGLDPERCVILEIAAIVTDDELET 33 >gi|167945239|ref|ZP_02532313.1| ribonuclease T [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 41 Score = 42.6 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 12/22 (54%), Positives = 16/22 (72%) Query: 10 IVFDIETTGLDSKNDRIIEIGA 31 IV D+ET G D+K D ++EI A Sbjct: 20 IVVDVETGGFDAKQDALLEIAA 41 >gi|83816222|ref|YP_444853.1| exonuclease, putative [Salinibacter ruber DSM 13855] gi|83757616|gb|ABC45729.1| exonuclease, putative [Salinibacter ruber DSM 13855] Length = 236 Score = 42.6 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 6/86 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTG + D +IE+G V + P + A ++HGITDE Sbjct: 67 VFLDTETTGSGPQ-DAVIELGVVAAQGEVLI----HTLVAP-LAPVTRGARRVHGITDEE 120 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWI 95 L D P F ++ + W Sbjct: 121 LADAPPFPTVADRLDTVLADAECVWT 146 >gi|187931547|ref|YP_001891531.1| exodeoxyribonuclease I [Francisella tularensis subsp. mediasiatica FSC147] gi|187712456|gb|ACD30753.1| exodeoxyribonuclease I [Francisella tularensis subsp. mediasiatica FSC147] Length = 482 Score = 42.6 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 1/129 (0%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71 D+ET+G+++ D++++ A+ F F+ N P A H I+ Sbjct: 11 DLETSGINNSFDQVLQFAAIRTYLDFNEIERFNFFVKLNPDTMPSPMATITHHISIAQSN 70 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + + N I +N N P + + S A Sbjct: 71 TGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKNGCSRAD 130 Query: 132 RKHPSSRND 140 + Sbjct: 131 LFPIVTCYY 139 >gi|148927126|ref|ZP_01810755.1| oligoribonuclease [candidate division TM7 genomosp. GTL1] gi|147887420|gb|EDK72865.1| oligoribonuclease [candidate division TM7 genomosp. GTL1] Length = 184 Score = 42.6 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 16/21 (76%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + DR++E+ A+ Sbjct: 16 LDLEMTGLDPQRDRVLEVAAI 36 >gi|332662172|ref|YP_004444960.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter hydrossis DSM 1100] gi|332330986|gb|AEE48087.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter hydrossis DSM 1100] Length = 194 Score = 42.6 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 57/189 (30%), Gaps = 21/189 (11%) Query: 11 VFDIETTGLD----------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 D ETTGL + R++++ + + + P G + Sbjct: 4 FLDTETTGLPLNWSAPISRVNNWPRMVQLAGLLYDEEGTLLEQLNYLVRPEGYTIPAAVV 63 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HGIT E + + + E++ +AHN FD + AE R K+ Sbjct: 64 RIHGITTERALAEGVPVAQVLNDFRSILEKSKLLVAHNVNFDHAIVGAEYHRYVKEDPLL 123 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK-----------HGALLDSHLLSD 169 + NS Y H A++D + Sbjct: 124 PIPKFCTMTSPEVIYHCALPANSPRGGYKWPKLEELHYKLFKEGIKGAHDAMVDITATAR 183 Query: 170 VYIKMMVGG 178 Y ++ G Sbjct: 184 CYWELKRLG 192 >gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195] gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195] Length = 879 Score = 42.6 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 61/216 (28%), Gaps = 14/216 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD ETTGL+++ +I+ V N F V L + Sbjct: 319 IAFDTETTGLNAREAKIVGFSFCV------SENEAFYVPLNHTYLAVPSQISMQTAKRAL 372 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ E N + + + + +P + D Sbjct: 373 GQIYSHFIIGHNLKYDFAIIENNFKLTPP-----KKYADTMILAWLYNPSLRVNMDDLAL 427 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFGFK 186 + + + ++ + A D+++ Y+ + + GF+ Sbjct: 428 RLFDYKTLHFESVVKKGENFASVELEKACNYAAEDAYITLRFYLYFLKNLEPNLLKLGFE 487 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222 + + K I L + + ++E+ Sbjct: 488 SEFNFIEVLRKMEQSGIKLETQKLQNLMQEFEKEIK 523 >gi|312959243|ref|ZP_07773761.1| ribonuclease T [Pseudomonas fluorescens WH6] gi|311286503|gb|EFQ65066.1| ribonuclease T [Pseudomonas fluorescens WH6] Length = 225 Score = 42.6 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 64/186 (34%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVF-LCP-NGRKNSPEALKLHG 64 +V D+ET G + D ++EI A + F + P G AL+ G Sbjct: 33 VVIDVETGGFNCATDALLEIAATTIGMDEQGFVYPEHTHFFRVEPFEGANIEAAALEFTG 92 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + + + A + HN+ FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 152 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI R H A D+ ++++ ++ Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 212 Query: 177 GGSQIN 182 Q+ Sbjct: 213 RWKQMG 218 >gi|300857574|ref|YP_003782557.1| DNA polymerase III subunit epsilon [Corynebacterium pseudotuberculosis FRC41] gi|300685028|gb|ADK27950.1| DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis FRC41] Length = 348 Score = 42.6 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 33/159 (20%), Gaps = 1/159 (0%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + I+T+G+ R+I + AV + + F + P L Sbjct: 22 YVALSIQTSGIHPSTSRLITVDAVTFTEDGEETDHFHAVINPGDNPGPFHLHGLSREEIA 81 Query: 69 FLKDKPSFSSIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 K + D + R Sbjct: 82 QGKKFSHILKPLGKLIDGRTLILHNTPYTWGFLVSESRRTMSAAARANRNRYRHRNRRRQ 141 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + P D + +R G+ L Sbjct: 142 RVGHIPRPRMIVDTLATARRQGVVFEDIRIRAVAHSLGL 180 >gi|260773955|ref|ZP_05882870.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] gi|260610916|gb|EEX36120.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] Length = 236 Score = 42.6 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 19/26 (73%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL 34 + FD ET+G++++ D I+ +G V++ Sbjct: 52 FVAFDFETSGVNARQDHILSLGWVDM 77 >gi|16763100|ref|NP_458717.1| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144582|ref|NP_807924.1| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414696|ref|YP_151771.1| exonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363623|ref|YP_002143260.1| exonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213051586|ref|ZP_03344464.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427175|ref|ZP_03359925.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213855476|ref|ZP_03383716.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25513436|pir||AI1038 probable exonuclease STY4637 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505408|emb|CAD06758.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Typhi] gi|29140220|gb|AAO71784.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128953|gb|AAV78459.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095100|emb|CAR60646.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 194 Score = 42.6 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 54/175 (30%), Gaps = 10/175 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL + I+EI ++ + + P + EA+ +HGIT+E Sbjct: 20 YLFIDTETTGLG-DDAEIVEICIIDSHGFIM----LNTLIKP-TKPIPDEAIAIHGITNE 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+++ I + F +NA FD+ I + ++ Sbjct: 74 MVAFAPAWTDICGAVEELFRRFGFV--IYNADFDLRLIRQTYALNERPSEGAPWMLAA-- 129 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + G A + + + + Sbjct: 130 HSVCAMKLYAEYRGEPGRFNGYKWHKLVDAAAHEGVVVEGKAHRALADCKMTLGL 184 >gi|323303994|gb|EGA57774.1| Rex2p [Saccharomyces cerevisiae FostersB] Length = 186 Score = 42.6 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 15/26 (57%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37 D E TGLD NDRIIEI + + Sbjct: 58 IDCEMTGLDHVNDRIIEICCIITDGH 83 >gi|317048499|ref|YP_004116147.1| exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b] gi|316950116|gb|ADU69591.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b] Length = 222 Score = 42.6 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 71/177 (40%), Gaps = 20/177 (11%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL ++E+ +V+++D +CP+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCGL---QGGVVEVASVDVIDGQIL-NPMSDLICPD-RPISHQAMAVHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP+ + + ++AHNA FD + P + I T+++A Sbjct: 59 ADKPTIEQAIGRYH-----GSPHYVAHNASFDRRMLPE----------MPGQWICTMTLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 R+ P + +L + ++ + A + ++ + + + Sbjct: 104 RQLWPGQKYGNQALRHSLKLDVTPPADLHAHRALYDCYVTAALLIRIMEKSGWNAEQ 160 >gi|256848055|ref|ZP_05553499.1| exonuclease RNase T and DNA polymerase III [Lactobacillus coleohominis 101-4-CHN] gi|256715115|gb|EEU30092.1| exonuclease RNase T and DNA polymerase III [Lactobacillus coleohominis 101-4-CHN] Length = 178 Score = 42.6 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 61/177 (34%), Gaps = 7/177 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET K + + D + F + P + +++HGI Sbjct: 1 MNFIAMDFET--ASPKRYSACSLSLAIVRDNQIVDE-FYSLINPQT-PFNWRNIQIHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + P F + F + IAHNA FD + L+ P + Sbjct: 57 ERDVANAPIF-PEVWKHIAPFYTPDKLVIAHNATFDNSVLKNTLEHYKITPPAYQTLDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + + LN++ I ++H H AL D+ +D+ I + Sbjct: 116 RTSQKLLPRLPNHKLNTVADALKIELNH--HHNALDDAQACADILINQVEQFGPSRL 170 >gi|256424775|ref|YP_003125428.1| exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis DSM 2588] gi|256039683|gb|ACU63227.1| Exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis DSM 2588] Length = 172 Score = 42.2 bits (97), Expect = 0.055, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 51/171 (29%), Gaps = 6/171 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE---ALKLH 63 M I+ D+E+ G + +I GAV++ ++TF L P K PE Sbjct: 1 MAYIMVDVESDGPIPGDYSMISFGAVKVDG--ILDKTFYGRLKPVSEKFIPEALAVSGHT 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 D + F + +I+ N FD F+ + Sbjct: 59 RAETLTFDDPKKVMNDFQNWISKVCNDRPIFISDNNGFDWMFVCWYFHHFLGENPFGFSS 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + S+ + + L K T ++ L + + Sbjct: 119 QNLGSVYKGMEKDMFTNFKHLRKTKH-THHPVDDAKGNAEALLTMKYKLGL 168 >gi|190574880|ref|YP_001972725.1| oligoribonuclease [Stenotrophomonas maltophilia K279a] gi|190012802|emb|CAQ46431.1| putative oligoribonuclease [Stenotrophomonas maltophilia K279a] Length = 190 Score = 42.2 bits (97), Expect = 0.055, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 56/182 (30%), Gaps = 9/182 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSP-EALKLHGI 65 R I D+E TGLD+ ND IIEI V T+ V P + P E L+ Sbjct: 10 RLIWIDLEMTGLDTDNDSIIEIATV------VTDAQLNVLAEGPEFAIHHPLETLEAMDE 63 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRII 124 + + + A+ + A++ G I +D R + Sbjct: 64 WNRNQHRRSGLWQRVVGSTTTLGQAEAQTVNFLAQWIPAGLSPMCGNSICQDRRFLHRQM 123 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L + + L KR+ +++ + + I + Q Sbjct: 124 PRLEKYFHYRNLDVSTVKELAKRWAPSVAAGVGKNSNHTALSDVHDSIAELRHYRQFMGA 183 Query: 185 FK 186 Sbjct: 184 LS 185 >gi|91787582|ref|YP_548534.1| oligoribonuclease [Polaromonas sp. JS666] gi|91696807|gb|ABE43636.1| Exonuclease [Polaromonas sp. JS666] Length = 187 Score = 42.2 bits (97), Expect = 0.056, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 19/31 (61%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 ++K+ + D E TGLD + +R+IEI V Sbjct: 8 LKKSDQNLVWLDCEMTGLDPEKERLIEIAVV 38 >gi|221487325|gb|EEE25557.1| oligoribonuclease protein, putative [Toxoplasma gondii GT1] Length = 367 Score = 42.2 bits (97), Expect = 0.056, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Query: 10 IV-FDIETTGLDSKNDRIIEIGAVELLD 36 IV D E TGLD + D+IIEI + Sbjct: 192 IVWVDCEMTGLDVETDQIIEIAVIVTDG 219 >gi|90413373|ref|ZP_01221366.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK] gi|90325615|gb|EAS42084.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK] Length = 207 Score = 42.2 bits (97), Expect = 0.056, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLC 49 + D ETT LD + ++ I A V + T+++ + L Sbjct: 31 VSVDCETTSLDPHSAELVTIAATVIKDNRILTSKSIHLTLR 71 >gi|46255199|ref|YP_006111.1| hypothetical protein TT_P0128 [Thermus thermophilus HB27] gi|46198048|gb|AAS82458.1| hypothetical protein TT_P0128 [Thermus thermophilus HB27] Length = 1649 Score = 42.2 bits (97), Expect = 0.056, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 62/225 (27%), Gaps = 12/225 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+E T D ++E+ AV D R F +L + Sbjct: 9 VALDLEATSTDPSEAEVLEVAAV---DGE--GRVFHRYLATQRPLPPDHEVFQLTGIPYE 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + + + HN + P +DTL + Sbjct: 64 EYEAKKVAPKEALEELLAFLGGRPLLGHNLLRYDLPLLQRHLEEAGLPRWQGEALDTLRL 123 Query: 130 ARRKHPSSRNDLNSLC----KRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 A P+ L + + H AL D+ V+ +++ G + Sbjct: 124 AHLLFPTPPGGLEGYRLGDLYAFLLGRPLEGAHRALNDAQATLAVFHRLLDRGRR---AL 180 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 + + +P L D+ L + E D ++ Sbjct: 181 AQHPGLVRAWRELGLPEGHLFPEDEGLIKDLLAREADVEAFFVEK 225 >gi|55978361|ref|YP_145417.1| hypothetical protein TTHB178 [Thermus thermophilus HB8] gi|55773534|dbj|BAD71974.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 296 Score = 42.2 bits (97), Expect = 0.056, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 62/225 (27%), Gaps = 12/225 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+E T D ++E+ AV D R F +L + Sbjct: 9 VALDLEATSTDPSEAEVLEVAAV---DGE--GRVFHRYLATQRPLPPDHEVFQLTGIPYE 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + + + HN + P +DTL + Sbjct: 64 EYEAKKVAPKEALEELLAFLGGRPLLGHNLLRYDLPLLQRHLEEAGLPRWQGEALDTLRL 123 Query: 130 ARRKHPSSRNDLNSLC----KRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 A P+ L + + H AL D+ V+ +++ G + Sbjct: 124 AHLLFPTPPGGLEGYRLGDLYAFLLGRPLEGAHRALNDAQATLAVFHRLLDRGRR---AL 180 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 + + +P L D+ L + E D ++ Sbjct: 181 AQHPGLVRAWRELGLPEGHLFPEDEGLIKDLLAREADVEAFFVEK 225 >gi|254525014|ref|ZP_05137069.1| oligoribonuclease [Stenotrophomonas sp. SKA14] gi|219722605|gb|EED41130.1| oligoribonuclease [Stenotrophomonas sp. SKA14] Length = 190 Score = 42.2 bits (97), Expect = 0.057, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 54/183 (29%), Gaps = 11/183 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 R I D+E TGLD+ ND IIEI V + F + E L+ Sbjct: 10 RLIWIDLEMTGLDTDNDSIIEIATVVTDAQLNVLAEGPEF-------AIHHPVETLEAMD 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRI 123 + + + + A+ + A++ G I +D R Sbjct: 63 EWNRNQHRRSGLWQRVVDSTTTLGQAEAQTVNFLAQWIPAGLSPMCGNSICQDRRFLHRQ 122 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + L + + L KR+ T++ + + I + Q Sbjct: 123 MPRLEKYFHYRNLDVSTVKELAKRWAPTVAAGVGKNSNHTALSDVHDSIAELRHYRQFMG 182 Query: 184 GFK 186 Sbjct: 183 ALS 185 >gi|269966857|ref|ZP_06180930.1| oligoribonuclease [Vibrio alginolyticus 40B] gi|269828524|gb|EEZ82785.1| oligoribonuclease [Vibrio alginolyticus 40B] Length = 219 Score = 42.2 bits (97), Expect = 0.057, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +IIEI ++ Sbjct: 49 VDLEMTGLDPETHKIIEIASI 69 >gi|254671000|emb|CBA07757.1| oligoribonuclease [Neisseria meningitidis alpha153] Length = 215 Score = 42.2 bits (97), Expect = 0.057, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + DRIIE+ + Sbjct: 38 LDMEMTGLNPETDRIIEVAMI 58 >gi|325479508|gb|EGC82604.1| conserved domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 301 Score = 42.2 bits (97), Expect = 0.058, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 21/31 (67%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYS 38 +IV DIETTGLDS D+++ +G + + + Sbjct: 16 NEIVLDIETTGLDSSVDKLVLLGIILVENNK 46 >gi|323353934|gb|EGA85787.1| Rex2p [Saccharomyces cerevisiae VL3] Length = 229 Score = 42.2 bits (97), Expect = 0.058, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 8/63 (12%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLCPNGRKNSPEALKLH 63 D E TGLD NDRIIEI + + + + ++ + Sbjct: 18 IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMBKMNEWCI 77 Query: 64 GIT 66 Sbjct: 78 EHH 80 >gi|254672653|emb|CBA06469.1| oligoribonuclease [Neisseria meningitidis alpha275] Length = 215 Score = 42.2 bits (97), Expect = 0.059, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + DRIIE+ + Sbjct: 38 LDMEMTGLNPETDRIIEVAMI 58 >gi|124002816|ref|ZP_01687668.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134] gi|123992044|gb|EAY31431.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134] Length = 1403 Score = 42.2 bits (97), Expect = 0.059, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 68/216 (31%), Gaps = 21/216 (9%) Query: 9 KIVFDIETTGLD-----SKND-----RIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSP 57 ++FD ETTGL D R+++I + + + + + P G Sbjct: 2 YLIFDTETTGLPKDFNAPHTDVDNWPRLVQIAWQLHDYNGKLVSAE-NMIVKPEGFTIPF 60 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL------- 110 A K+HGI+ E ++ + E + ++ I HN FDV + AE Sbjct: 61 NAEKVHGISTEIALEEGLPLNEVLEKFAVDIARSELIIGHNIGFDVNIMGAEYVRTTVDS 120 Query: 111 --QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 + + + I + + + + S H A D + Sbjct: 121 KLHEVPTYDTKSEETAEYVGIQGGRGGKFKWPTLTELHTKLFSESFDDAHDAAYDVLATA 180 Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204 Y ++ G G + ++ N Sbjct: 181 RCYFGLISIGIAPPLGDLEADAVVYEPPVLDAANFE 216 >gi|313905505|ref|ZP_07838869.1| Exonuclease RNase T and DNA polymerase III [Eubacterium cellulosolvens 6] gi|313469689|gb|EFR65027.1| Exonuclease RNase T and DNA polymerase III [Eubacterium cellulosolvens 6] Length = 320 Score = 42.2 bits (97), Expect = 0.059, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 8/52 (15%) Query: 7 MRKIVFDIE----TTGLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCP 50 M IVFD+E G +N R IIEIGAV+L T+Q + P Sbjct: 1 MNYIVFDLEWNQSPHGKSRENPRLPFEIIEIGAVKLDHERNIVDTWQKVIRP 52 >gi|149633012|ref|XP_001508919.1| PREDICTED: similar to Three prime histone mRNA exonuclease 1 [Ornithorhynchus anatinus] Length = 467 Score = 42.2 bits (97), Expect = 0.059, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 16/199 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 V D E T G + IIE V L ++ + TFQ ++ P S + L G Sbjct: 250 VIDFEATCEEGNPPEFIHEIIEFPIVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINLTG 309 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---- 120 IT + + +F + + ++ ++ + G + + + Sbjct: 310 ITQDVVDRADTFPQVLQKVVEWMRQKELGTKYKYSILTDGSWDMSKFLTIQCRISHLKYP 369 Query: 121 -----SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G++ + R H L DS ++ + ++M+ Sbjct: 370 AFAKKWINIRKSYGNFYKVPRSQTKLAIMLEKLGMSYAGRP-HSGLDDSKNIARIAVRML 428 Query: 176 VGGSQINFGFKTNEDRFFK 194 G Q+ K + + Sbjct: 429 QDGCQLRVNEKMHAGQLTS 447 >gi|260770593|ref|ZP_05879525.1| oligoribonuclease [Vibrio furnissii CIP 102972] gi|260614423|gb|EEX39610.1| oligoribonuclease [Vibrio furnissii CIP 102972] gi|315178350|gb|ADT85264.1| oligoribonuclease [Vibrio furnissii NCTC 11218] Length = 181 Score = 42.2 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +IIEI Sbjct: 11 IDLEMTGLDPETHKIIEIA 29 >gi|237829909|ref|XP_002364252.1| oligoribonuclease, putative [Toxoplasma gondii ME49] gi|211961916|gb|EEA97111.1| oligoribonuclease, putative [Toxoplasma gondii ME49] gi|221507120|gb|EEE32724.1| oligoribonuclease, putative [Toxoplasma gondii VEG] Length = 367 Score = 42.2 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Query: 10 IV-FDIETTGLDSKNDRIIEIGAVELLD 36 IV D E TGLD + D+IIEI + Sbjct: 192 IVWVDCEMTGLDVETDQIIEIAVIVTDG 219 >gi|111022071|ref|YP_705043.1| DNA polymerase III subunit epsilon [Rhodococcus jostii RHA1] gi|110821601|gb|ABG96885.1| DNA polymerase [Rhodococcus jostii RHA1] Length = 231 Score = 42.2 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 9/145 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG D + RI+ + ++D + +RT+ L P + T+ Sbjct: 11 AFDLETTGPDPTDARIVS-ACIAVVDAHHFESRTW--LLDPEVPIPQGASDVHGISTEYA 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +++ + E + ++ +A NA +D+ ++ E R+ L ++D Sbjct: 68 RAHGQDYATGYGEIREALHDAWTRDHAVVAFNASYDLTVMHTEGLRLGLAELVTGIVVDP 127 Query: 127 LSIARRKHPSSRNDLN--SLCKRYG 149 I R + ++C+ YG Sbjct: 128 YVIDREMDRHRKGRRTLGAVCEHYG 152 >gi|74317857|ref|YP_315597.1| oligoribonuclease [Thiobacillus denitrificans ATCC 25259] gi|123611601|sp|Q3SHU1|ORN_THIDA RecName: Full=Oligoribonuclease gi|74057352|gb|AAZ97792.1| Exonuclease [Thiobacillus denitrificans ATCC 25259] Length = 182 Score = 42.2 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL ++DRIIE+ V Sbjct: 11 LDMEMTGLSPESDRIIELAIV 31 >gi|332557484|ref|ZP_08411806.1| Exonuclease [Rhodobacter sphaeroides WS8N] gi|332275196|gb|EGJ20511.1| Exonuclease [Rhodobacter sphaeroides WS8N] Length = 309 Score = 42.2 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 56/203 (27%), Gaps = 11/203 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R I D+ET D + I +IG ++ + F + P +HGI Sbjct: 27 RFIAVDVETATADPAS--ICQIGLACIDHQNGFHL---FSTLVDPE-VPIDYRNRAIHGI 80 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D ++ P F + + + ++ FD A R PL S Sbjct: 81 CDGDVRGMPCFPVAMAAMRELLEAS---PLVEHSSFDHRAFAAACARYGLPPLSASWHDS 137 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + N + L H A D++ + + + Sbjct: 138 VRAARNAWPHLKGNGGHGLSSVCAHLALEFDHHDAGADAYACASIILAAEAETGASFPDL 197 Query: 186 KTNEDRFFKEEKKTVPNISLLKR 208 ++ + V R Sbjct: 198 FAPAPTARRQRSEPVRRAPSPGR 220 >gi|126725765|ref|ZP_01741607.1| Exonuclease [Rhodobacterales bacterium HTCC2150] gi|126704969|gb|EBA04060.1| Exonuclease [Rhodobacterales bacterium HTCC2150] Length = 193 Score = 42.2 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 64/190 (33%), Gaps = 17/190 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I D+ET + I +IG + +++ + T+ ++ P +LHGI Sbjct: 10 RFIAVDVET--ANYDVSSICQIG-LAFVNFDASIDTYSTYVDPCTSFAD-GNTRLHGIDA 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P F+ I E + +++FD +A PL + Sbjct: 66 RTVRGAPVFAQILPELRSVLEAHQ---LVQHSRFDEKAFDAACSFAGVPPLKSAWENSVT 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI----------KMMVG 177 + N + L + + H A D+ ++V + M G Sbjct: 123 IARKAWPELKGNGGHGLGNLKKVLGLQFNHHDAGEDARAAAEVVLMAEKRMGAKFNMYSG 182 Query: 178 GSQINFGFKT 187 Q+ F F Sbjct: 183 SRQLAFEFNE 192 >gi|194366202|ref|YP_002028812.1| oligoribonuclease [Stenotrophomonas maltophilia R551-3] gi|194349006|gb|ACF52129.1| Exonuclease RNase T and DNA polymerase III [Stenotrophomonas maltophilia R551-3] Length = 190 Score = 42.2 bits (97), Expect = 0.061, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 50/182 (27%), Gaps = 9/182 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66 R I D+E TGLD+ ND IIEI V T+ V P + P Sbjct: 10 RLIWIDLEMTGLDTDNDSIIEIATV------VTDAQLNVLAEGPEFAIHHPLETLEAMDE 63 Query: 67 DEFLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + S + + + G I +D R + Sbjct: 64 WNRNQHRRSGLWQRVVDSTVTLAQAEAQTVNFLAQWIPAGLSPMCGNSICQDRRFLHRQM 123 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L + + L KR+ T++ + + I + Q Sbjct: 124 PRLEKYFHYRNLDVSTVKELAKRWAPTVAAGVGKNSNHTALSDVHDSIAELRHYRQFMGA 183 Query: 185 FK 186 Sbjct: 184 LS 185 >gi|146329636|ref|YP_001209796.1| oligoribonuclease [Dichelobacter nodosus VCS1703A] gi|166216257|sp|A5EY84|ORN_DICNV RecName: Full=Oligoribonuclease gi|146233106|gb|ABQ14084.1| oligoribonuclease [Dichelobacter nodosus VCS1703A] Length = 180 Score = 42.2 bits (97), Expect = 0.061, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M +KN + D+E TGLD ++D IIEI Sbjct: 1 MDKKN--NLVWIDLEMTGLDPQHDEIIEIA 28 >gi|284799973|ref|ZP_05985349.2| oligoribonuclease [Neisseria subflava NJ9703] gi|284796237|gb|EFC51584.1| oligoribonuclease [Neisseria subflava NJ9703] Length = 230 Score = 42.2 bits (97), Expect = 0.062, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 47/178 (26%), Gaps = 3/178 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+E TGL+ ++DRIIE+ + V++ + + + T Sbjct: 56 LDMEMTGLNPEHDRIIEVAMIITDSDLNVLAQSDVYVIHQSDELLDGMDEWNTATHGRTG 115 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + A I++D + + L Sbjct: 116 LTQRVRESKLTEAEVEQNLLDFMSAW---IPEKSTPMCGNSIHQDRRFMVKYMPRLEAYF 172 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + L L KR+ ++ + I+ M + + + Sbjct: 173 HYRNLDVSTLKELAKRWNPAVAKSVVKRGSHKALDDILESIEEMRHYREHFLKLPSEQ 230 >gi|149922094|ref|ZP_01910534.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Plesiocystis pacifica SIR-1] gi|149817031|gb|EDM76513.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Plesiocystis pacifica SIR-1] Length = 213 Score = 42.2 bits (97), Expect = 0.062, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 6/52 (11%) Query: 9 KIVFDIETT----GLDSKND-RIIEIGAVELLDYSKT-NRTFQVFLCPNGRK 54 +V D+E T G + + IIEIGAV + + R FQ F+ P + Sbjct: 6 YLVIDLEATCDDAGAVPRREMEIIEIGAVLVDGQTLCPKREFQRFVRPLRHR 57 >gi|213029040|ref|ZP_03343487.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 139 Score = 42.2 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 10/122 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + R+ + + Sbjct: 59 ADKPWIEDVI-----PLYYGSEWYVAHNASFDRRVLPELPGEWICTMKLSRRLWPGIKYS 113 Query: 131 RR 132 Sbjct: 114 NM 115 >gi|315638420|ref|ZP_07893597.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter upsaliensis JV21] gi|315481411|gb|EFU72038.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter upsaliensis JV21] Length = 260 Score = 42.2 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 6/164 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIE+TG + +I+EIGAV++ ++ + +R F+ F+ + +L GI + Sbjct: 74 IVDIESTGG-INSGQILEIGAVKIQNHKELDR-FESFVK--VDEIPLNITELTGIELNMV 129 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD P+ + + F ++ ++AHN KFD FI+ L L +I Sbjct: 130 KDAPNLTRVLEAF--RLFLNDSVFVAHNVKFDYNFISKSLYECGFGILLNRKICTIDFAQ 187 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 S + HR+ + AL + + K+ Sbjct: 188 CCIESSHYKLDALKEILKIESTHHRALNDALAAAEIFKYCLSKL 231 >gi|170781928|ref|YP_001710260.1| oligoribonuclease [Clavibacter michiganensis subsp. sepedonicus] gi|169156496|emb|CAQ01646.1| oligoribonuclease [Clavibacter michiganensis subsp. sepedonicus] Length = 206 Score = 42.2 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNG 52 + N R + D E TGLD D ++E+ V D + F + + P+ Sbjct: 1 MGNNADRLVWIDCEMTGLDLAIDELVEVAVVVTDFDLVPVDAGFTIVINPDP 52 >gi|165905605|ref|NP_080343.4| 3'-5' exoribonuclease 1 [Mus musculus] gi|26380424|dbj|BAB29333.2| unnamed protein product [Mus musculus] gi|74228094|dbj|BAE38007.1| unnamed protein product [Mus musculus] Length = 345 Score = 42.2 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G ++ IIE V L ++ + TFQ ++ P S + L G Sbjct: 128 IIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNDQLSEFCIGLTG 187 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + + ++ + + + + + Sbjct: 188 ITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLSRLKHP 247 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G+ R H L DS ++ + I+M+ Sbjct: 248 AFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAIRML 306 Query: 176 VGGSQINFG 184 G ++ Sbjct: 307 QDGCELRIN 315 >gi|190015910|ref|YP_001965118.1| putative exonuclease [Rhodococcus sp. NS1] gi|114796750|gb|ABI79343.1| putative exonuclease [Rhodococcus sp. NS1] Length = 238 Score = 42.2 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 10/160 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ET+GLD IIEI + + T + + + P A+++HG+T Sbjct: 53 IVDVETSGLD---GSIIEIAVI----DAATGEVLLNTLVDCSPVEIEPGAVEVHGLTATD 105 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L P +S +F E +N +A+NAKFD G + + +R DP + + Sbjct: 106 LAGAPRWSEVFPELAA--ATKNRVVLAYNAKFDRGRVLHDCRREGIDPAHLAEPARWQCV 163 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 R+ + L+ + G + + +L+D Sbjct: 164 MARRCEALGLGLDGRLRLGGGHRALADVRATRVVLRMLAD 203 >gi|254451927|ref|ZP_05065364.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238] gi|198266333|gb|EDY90603.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238] Length = 464 Score = 42.2 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRT 43 M FD+ETTG+ D+ ++ A+ D+ + R Sbjct: 1 MNFAFFDLETTGVSPAFDQPLQFAAILTDSDFKEIERV 38 >gi|75812567|ref|YP_320186.1| exonuclease [Anabaena variabilis ATCC 29413] gi|75705323|gb|ABA24997.1| Exonuclease [Anabaena variabilis ATCC 29413] Length = 192 Score = 42.2 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 55/176 (31%), Gaps = 7/176 (3%) Query: 9 KIVFDIETT----GLDSKND-RIIEIGAVELLDYSK-TNRTFQVFLCPNGRKN-SPEALK 61 +V D+E T G +++ IIEIGAV + + FQ F+ P + Sbjct: 10 FLVLDLEATCCDKGTIKRHEMEIIEIGAVMVEAQTLKILDEFQTFIKPIRHPILTEFCKL 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L IT + P + + + ++ +D + + N Sbjct: 70 LTSITQTQVDHAPEYPEAIAMLKQWLSKYPNAVFGSWGDYDRNQFKQDSKFHNILFPIAY 129 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 I+ + + + + H + D+ ++ + ++ Sbjct: 130 PHINLKQMFSESQDLPKRYGMAEALQLVNIELEGIHHRGIDDAKNIAKLLPWILNE 185 >gi|15617165|ref|NP_240378.1| oligoribonuclease [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11133762|sp|P57637|ORN_BUCAI RecName: Full=Oligoribonuclease gi|25338349|pir||H84996 oligoribonuclease [imported] - Buchnera sp. (strain APS) gi|10039230|dbj|BAB13264.1| oligoribonuclease [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 184 Score = 42.2 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 ++ NK I D+E TGL+ K RIIEI Sbjct: 1 MKINKKNLIWIDLEMTGLNPKVHRIIEIA 29 >gi|227543169|ref|ZP_03973218.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51866] gi|227180978|gb|EEI61950.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51866] Length = 449 Score = 42.2 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 71/209 (33%), Gaps = 5/209 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D+ET + IIEIG ++L+ + T++ P E + +HGI Sbjct: 105 FVAIDVET--ANDDWGSIIEIGVTKVLNGLVEEQATWRCTPPPGMEDFLDENIAIHGIRP 162 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ +PSF+ + + ++HNA+FD + + Sbjct: 163 EDIEGEPSFAQRYELVKE--FTGELPMVSHNAQFDFTALARACHASHCAAAPNEFGCSLA 220 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 R + N L +C+ GI + H ++ + + G + F Sbjct: 221 LSRSRDLGFATNRLPDVCRGLGIALEHHHCAADDAEACARIITSLASIDGFTGSFPEFIA 280 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + + + S+ K + Sbjct: 281 STGFTMGKIRNEGRIRSVQKIRHDRSSSP 309 >gi|50086122|ref|YP_047632.1| oligoribonuclease [Acinetobacter sp. ADP1] gi|59798028|sp|Q6F805|ORN_ACIAD RecName: Full=Oligoribonuclease gi|49532098|emb|CAG69810.1| oligoribonuclease [Acinetobacter sp. ADP1] Length = 183 Score = 42.2 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 21/37 (56%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37 M R I D+E TGLD+ ND+IIEI + D+ Sbjct: 1 MSSTQDTRLIWIDLEMTGLDTDNDQIIEIATIITDDH 37 >gi|302537604|ref|ZP_07289946.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] gi|302446499|gb|EFL18315.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] Length = 253 Score = 42.2 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 10/28 (35%), Positives = 14/28 (50%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK 39 FD+ETTG + RI+ VE+ Sbjct: 22 FDLETTGTEPGESRIVTAAVVEVRGGEV 49 >gi|302329867|gb|ADL20061.1| DNA polymerase III subunit epsilon [Corynebacterium pseudotuberculosis 1002] gi|308275553|gb|ADO25452.1| DNA polymerase III subunit epsilon [Corynebacterium pseudotuberculosis I19] Length = 369 Score = 42.2 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 33/159 (20%), Gaps = 1/159 (0%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + I+T+G+ R+I + AV + + F + P L Sbjct: 43 YVALSIQTSGIHPSTSRLITVDAVTFTEDGEETDHFHAVINPGDNPGPFHLHGLSREEIA 102 Query: 69 FLKDKPSFSSIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 K + D + R Sbjct: 103 QGKKFSHILKPLGKLIDGRTLILHNTPYTWGFLVSESRRAMSAAARANRNRYRHRNRRRQ 162 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + P D + +R G+ L Sbjct: 163 RVGHIPRPRMIVDTLATARRQGVVFEDIRIRAVAHSLGL 201 >gi|227488565|ref|ZP_03918881.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51867] gi|227091459|gb|EEI26771.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51867] Length = 449 Score = 42.2 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 71/209 (33%), Gaps = 5/209 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D+ET + IIEIG ++L+ + T++ P E + +HGI Sbjct: 105 FVAIDVET--ANDDWGSIIEIGVTKVLNGLVEEQATWRCTPPPGMEDFLDENIAIHGIRP 162 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ +PSF+ + + ++HNA+FD + + Sbjct: 163 EDIEGEPSFAQRYELVKE--FTGELPMVSHNAQFDFTALARACHASHCAAAPNEFGCSLA 220 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 R + N L +C+ GI + H ++ + + G + F Sbjct: 221 LSRSRDLGFATNRLPDVCRGLGIALEHHHCAADDAEACARIITSLASIDGFTGSFPEFIA 280 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + + + S+ K + Sbjct: 281 STGFTMGKIRNEGRIRSVQKIRHDRSSSP 309 >gi|153939051|ref|YP_001391011.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum F str. Langeland] gi|152934947|gb|ABS40445.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum F str. Langeland] gi|295319069|gb|ADF99446.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum F str. 230613] Length = 195 Score = 42.2 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTF 44 M+KI D ETTGL+ II++ V +++ + F Sbjct: 1 MKKIFIDTETTGLEPG--EIIQLTYCVCDINFRGEEKVF 37 >gi|302205313|gb|ADL09655.1| DNA polymerase III subunit epsilon [Corynebacterium pseudotuberculosis C231] Length = 348 Score = 42.2 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 33/159 (20%), Gaps = 1/159 (0%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + I+T+G+ R+I + AV + + F + P L Sbjct: 22 YVALSIQTSGIHPSTSRLITVDAVTFTEDGEETDHFHAVINPGDNPGPFHLHGLSREEIA 81 Query: 69 FLKDKPSFSSIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 K + D + R Sbjct: 82 QGKKFSHILKPLGKLIDGRTLILHNTPYTWGFLVSESRRAISAAARANRNRYRHRNRRRQ 141 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + P D + +R G+ L Sbjct: 142 RVGHIPRPRMIVDTLATARRQGVVFEDIRIRAVAHSLGL 180 >gi|238926233|ref|ZP_04657993.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531] gi|238885913|gb|EEQ49551.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531] Length = 179 Score = 42.2 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGIT 66 + +VFD ETTG S D ++ + V + T T P + P+A +++ I+ Sbjct: 3 KILVFDTETTGFRSD-DEVLTLAVV---NG--TGETMVDSMYAPVRKAEWPDAERINRIS 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D + E FN + + +N +FD+ + RI + + Sbjct: 57 PAMVADCDPILTHREELECLFNAPDTLLVGYNIEFDIRLLAQSGIRITNANRHDVMLAFS 116 Query: 127 ---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R+ L + Y HGAL D+ Y KM Sbjct: 117 AFRKVPDARRGGYRWWKLTECAEYYRYDWGTTVAHGALADTLATLFCYRKM 167 >gi|226288880|gb|EEH44392.1| phosphoglucomutase [Paracoccidioides brasiliensis Pb18] Length = 806 Score = 42.2 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 10/20 (50%), Positives = 13/20 (65%) Query: 12 FDIETTGLDSKNDRIIEIGA 31 D E TGLD + D+II+I Sbjct: 13 IDCEMTGLDPRTDKIIQICC 32 >gi|213964467|ref|ZP_03392667.1| DNA polymerase III subunit epsilon [Corynebacterium amycolatum SK46] gi|213952660|gb|EEB64042.1| DNA polymerase III subunit epsilon [Corynebacterium amycolatum SK46] Length = 226 Score = 42.2 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 16/27 (59%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL 34 R + FD+ETTG D + +I+ V L Sbjct: 8 RMLAFDLETTGTDPRTCKIVTSALVRL 34 >gi|88856168|ref|ZP_01130828.1| DNA polymerase III subunit epsilon [marine actinobacterium PHSC20C1] gi|88814487|gb|EAR24349.1| DNA polymerase III subunit epsilon [marine actinobacterium PHSC20C1] Length = 232 Score = 42.2 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 4/42 (9%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPN 51 FD+ETTG+D + RI+ + L+D +R + P Sbjct: 10 FDLETTGVDVETSRIVS-ACIALVDASGVVISR-WDWLADPG 49 >gi|323308092|gb|EGA61345.1| Rex2p [Saccharomyces cerevisiae FostersO] Length = 229 Score = 42.2 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 15/26 (57%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37 D E TGLD NDRIIEI + + Sbjct: 18 IDCEMTGLDHVNDRIIEICCIITDGH 43 >gi|311087943|gb|ADP68022.1| oligoribonuclease [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 178 Score = 42.2 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 ++ NK I D+E TGL+ K RIIEI Sbjct: 1 MKINKKNLIWIDLEMTGLNPKVHRIIEIA 29 >gi|20089704|ref|NP_615779.1| hypothetical protein MA0820 [Methanosarcina acetivorans C2A] gi|19914634|gb|AAM04259.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 249 Score = 42.2 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 9/46 (19%) Query: 11 VFDIETTGLDSKNDRIIEIGA---------VELLDYSKTNRTFQVF 47 FDIETTGL DRI +G V ++ F + Sbjct: 89 FFDIETTGLSPARDRITVVGIYDGNESKMYVRGINLDDIVEEFSKY 134 >gi|146310438|ref|YP_001175512.1| exodeoxyribonuclease X [Enterobacter sp. 638] gi|145317314|gb|ABP59461.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638] Length = 223 Score = 42.2 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 47/166 (28%), Gaps = 17/166 (10%) Query: 11 VFDIETTGLD--SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGL+ + ++E+ +V+++D + P Sbjct: 4 VIDTETTGLEGGPET--VVELASVDIVDGVIC-NPMSDLVKPGV------------AIGF 48 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + E +E ++ +A + + D S Sbjct: 49 EAMAIHHITEDMVEGAPLLSEVIGRYLGADAYVAHNAKFDKSKLPQIDAPWICTAKLARS 108 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + S L H AL D ++ +++ + M Sbjct: 109 LLPEHKSHSNQYLRYSLGLKPEVPEGLYAHRALYDCYVTAELLLYM 154 >gi|319779642|ref|YP_004130555.1| 3'-to-5' oligoribonuclease (orn) [Taylorella equigenitalis MCE9] gi|317109666|gb|ADU92412.1| 3'-to-5' oligoribonuclease (orn) [Taylorella equigenitalis MCE9] Length = 181 Score = 42.2 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 17/31 (54%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 + R + D+E TGL+ DRIIE+ + Sbjct: 1 MPNKSHRMVWLDMEMTGLNPDQDRIIEVAVI 31 >gi|119946941|ref|YP_944621.1| oligoribonuclease [Psychromonas ingrahamii 37] gi|119865545|gb|ABM05022.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas ingrahamii 37] Length = 179 Score = 42.2 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 16/26 (61%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIG 30 NK + D+E TGL+ D+IIEI Sbjct: 2 NKNNLVWIDLEMTGLNPDTDKIIEIA 27 >gi|71274937|ref|ZP_00651225.1| Exonuclease [Xylella fastidiosa Dixon] gi|71898826|ref|ZP_00680994.1| Exonuclease [Xylella fastidiosa Ann-1] gi|170729792|ref|YP_001775225.1| oligoribonuclease [Xylella fastidiosa M12] gi|71164669|gb|EAO14383.1| Exonuclease [Xylella fastidiosa Dixon] gi|71731412|gb|EAO33475.1| Exonuclease [Xylella fastidiosa Ann-1] gi|167964585|gb|ACA11595.1| oligoribonuclease [Xylella fastidiosa M12] Length = 193 Score = 42.2 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 49/176 (27%), Gaps = 9/176 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66 R I D+E TGLD+ D IIEI V T+ V P + P + Sbjct: 13 RLIWIDLEMTGLDTHRDSIIEIATV------VTDAQLNVLAEGPEFAISHPLNVLEAMDE 66 Query: 67 DEFLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + S + + + + + G I +D R + Sbjct: 67 WNRNQHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKTGASPMCGNSICQDRRFLHRQM 126 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L + L L + +I + + I + + Sbjct: 127 PCLERYFHYRNLDVSTLKELAGCWSPSILDGVVKTSNHTALSDIYDSIAELRHYRK 182 >gi|149377531|ref|ZP_01895272.1| oligoribonuclease [Marinobacter algicola DG893] gi|149358223|gb|EDM46704.1| oligoribonuclease [Marinobacter algicola DG893] Length = 180 Score = 42.2 bits (97), Expect = 0.072, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT 43 D+E TGLD + +RIIEI + T Sbjct: 10 IDLEMTGLDPEKERIIEIATIVTDSDLNTIEE 41 >gi|163856231|ref|YP_001630529.1| oligoribonuclease [Bordetella petrii DSM 12804] gi|163259959|emb|CAP42260.1| oligoribonuclease [Bordetella petrii] Length = 181 Score = 41.8 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 19/31 (61%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 + N+ R + D+E TGLD +RIIE+ V Sbjct: 1 MAANENRLVWLDMEMTGLDPTKERIIEVAVV 31 >gi|331002347|ref|ZP_08325865.1| hypothetical protein HMPREF0491_00727 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410163|gb|EGG89597.1| hypothetical protein HMPREF0491_00727 [Lachnospiraceae oral taxon 107 str. F0167] Length = 357 Score = 41.8 bits (96), Expect = 0.074, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 65/209 (31%), Gaps = 9/209 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +++ FDIETTGL KN + IG + + + + S E L L + Sbjct: 24 KQLFFDIETTGLSPKNSNLYLIGCISIDGDKLIFKQWFS------ESLSEETLILQAFYE 77 Query: 68 EFLKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 F + E ++ N + I+ Q ++ Sbjct: 78 YAAGFDTLIHFNGDGFDLPYIKECAKQYYLFNPLENYKSIDIYKQIRYLKKPLSLSHMNQ 137 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS--DVYIKMMVGGSQINFG 184 S+ ++ + SK ++L LL + + M+ ++F Sbjct: 138 KSLEEFLGLYRKDLYDGGTLIRFYYDYIESKDKSILADLLLHNEEDLLGMLKVAEMLSFI 197 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 N + E ++ + L+ + Sbjct: 198 DFFNSNFILYESRRDEQKLYLVYKSSEYI 226 >gi|326470961|gb|EGD94970.1| RNA exonuclease Rex2 [Trichophyton tonsurans CBS 112818] gi|326482205|gb|EGE06215.1| RNA exonuclease Rex2 [Trichophyton equinum CBS 127.97] Length = 188 Score = 41.8 bits (96), Expect = 0.074, Method: Composition-based stats. Identities = 11/20 (55%), Positives = 13/20 (65%) Query: 12 FDIETTGLDSKNDRIIEIGA 31 D E TGLD NDRI++I Sbjct: 13 IDCEMTGLDPANDRILQICC 32 >gi|226372150|gb|ACO51700.1| Histone mRNA 3-exonuclease 1 [Rana catesbeiana] Length = 348 Score = 41.8 bits (96), Expect = 0.074, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 16/189 (8%) Query: 11 VFDIETT--GLDSKN--DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G ++ + IIE V L + + TFQ ++ P + S + L G Sbjct: 131 IIDFEATCEGGNATDYVHEIIEFPIVLLNTRTLEIEDTFQRYVKPEIKPQLSEFCINLTG 190 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + D+ ++ + + + + Sbjct: 191 ITQDIIDQADTFPVVLQSVVDWMRQKELGTKYKYAILTDGSWDMSKFLNMQCRVSRIKYP 250 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P ++ L + ++ G++ H L DS ++ + I M+ Sbjct: 251 RFAKKWINIRKCYGNFYKVPRNQTKLTVMLEKLGMSYI-GRLHSGLDDSKNIARIAIHML 309 Query: 176 VGGSQINFG 184 G ++ Sbjct: 310 QDGCELRVN 318 >gi|219681916|ref|YP_002468302.1| oligoribonuclease [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682471|ref|YP_002468855.1| oligoribonuclease [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471622|ref|ZP_05635621.1| oligoribonuclease [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219622204|gb|ACL30360.1| oligoribonuclease [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624759|gb|ACL30914.1| oligoribonuclease [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086294|gb|ADP66376.1| oligoribonuclease [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311087458|gb|ADP67538.1| oligoribonuclease [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 184 Score = 41.8 bits (96), Expect = 0.074, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 ++ NK I D+E TGL+ K RIIEI Sbjct: 1 MKINKKNLIWIDLEMTGLNPKVHRIIEIA 29 >gi|330503165|ref|YP_004380034.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina NK-01] gi|328917451|gb|AEB58282.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina NK-01] Length = 182 Score = 41.8 bits (96), Expect = 0.075, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 5/113 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 +V D+E TT G + IIEIGA + FQ + P R + +L Sbjct: 4 WLVIDLEATTDEGGWPMEEMEIIEIGASLVGVDGHERDHFQRIVKPQRRPCLTDFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 IT + ++++F + + + ++ D E + Sbjct: 64 HITQSDVDSAAPMPQVWAQFERWLTQHAPRLVGWSSWGDYDRRQLEQEWRQHH 116 >gi|294790670|ref|ZP_06755828.1| oligoribonuclease [Scardovia inopinata F0304] gi|294458567|gb|EFG26920.1| oligoribonuclease [Scardovia inopinata F0304] Length = 242 Score = 41.8 bits (96), Expect = 0.075, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 60/220 (27%), Gaps = 6/220 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I D E TGLD +D + E+ V + + +R + + P+ + + Sbjct: 22 RLIWIDCEMTGLDIDHDELCEVSVVPTDFNLTVLDRGIDLVIKPSQGALDHMGDFVRHMH 81 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + + + +K LD Sbjct: 82 TVSGLLEQMKEGLVLGQAEKQVIEYVRPFLPEEGQGKAHLAGNTIGSDKKFLDKFMPGLM 141 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF--- 183 + R S S + + KHG + + + + Q F Sbjct: 142 GLLHYRTIDVSTLKELSRRWYPQVYSNRPVKHGGHRALADIIESIDE-LRYYRQSMFLPQ 200 Query: 184 -GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222 G N+ + + + +R+ T T E Sbjct: 201 PGLSANQAAAVCAQIEETSLLRTYEREGDPLTETTSAEKK 240 >gi|241759454|ref|ZP_04757558.1| oligoribonuclease Orn [Neisseria flavescens SK114] gi|241320236|gb|EER56569.1| oligoribonuclease Orn [Neisseria flavescens SK114] Length = 185 Score = 41.8 bits (96), Expect = 0.075, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 9/181 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+E TGL+ ++DRIIE+ + T+ V + L+G+ + Sbjct: 11 LDMEMTGLNPEHDRIIEVAMI------ITDSNLNVLAQSDVYVIHQSDELLNGMDEWNTT 64 Query: 72 DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 E + +A I++D + + L Sbjct: 65 THGRTGLTQRVRESKLTEAEVEQNLLGFMSAWIPEKSTPMCGNSIHQDRRFMVKYMPRLE 124 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L L KR+ ++ + I+ M + + Sbjct: 125 AYFHYRNLDVSTLKELAKRWNPAVAKSVVKRGSHKALDDILESIEEMRHYREHFLKLPSE 184 Query: 189 E 189 + Sbjct: 185 Q 185 >gi|224049609|ref|XP_002196066.1| PREDICTED: three prime histone mRNA exonuclease 1 [Taeniopygia guttata] Length = 387 Score = 41.8 bits (96), Expect = 0.075, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 59/183 (32%), Gaps = 16/183 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKN-SPEALKLHG 64 V D E T G + IIE V + + TFQ ++ P S + L G Sbjct: 170 VVDFEATCEEGNPPEFVHEIIEFPVVLVNTRTLEIEDTFQQYVKPEINPKLSDFCISLTG 229 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115 IT + + F + ++ ++ + + + + Sbjct: 230 ITQDIVDKADIFPQVLQNVIEWMRQRELGTKYSYSMLTDGSWDMSKFLNTQCRISRIKYP 289 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P ++ L + + G+ R H L DS ++ + I+M+ Sbjct: 290 SFAKKWINIRKSYGNFYKVPRNQTKLTIMLENLGMNYDGRP-HSGLDDSKNIARIAIRML 348 Query: 176 VGG 178 G Sbjct: 349 QDG 351 >gi|72161431|ref|YP_289088.1| hypothetical protein Tfu_1027 [Thermobifida fusca YX] gi|71915163|gb|AAZ55065.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX] Length = 590 Score = 41.8 bits (96), Expect = 0.075, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 59/171 (34%), Gaps = 2/171 (1%) Query: 18 GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77 G +IE+GAV L D + F + P+ + L T + Sbjct: 57 GTHPATAALIEVGAVRLRDGQVLDE-FTTLVNPHAPVPASITLLTGITTAMVESAPSPAA 115 Query: 78 SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS 137 ++ + +AHNA FDV F+ A R ++DTL +ARR P Sbjct: 116 ALSAFLDFAGFRPGTVLVAHNAPFDVRFLKAACARHGIPWP-SPAVLDTLQLARRLVPRG 174 Query: 138 RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + L + +H H AL D+ +DV ++ Sbjct: 175 EVRNHRLDTLARVFGAHPPAHRALDDARATADVLRGLVGRLRARGVDTWEE 225 >gi|52425567|ref|YP_088704.1| oligoribonuclease [Mannheimia succiniciproducens MBEL55E] gi|59798011|sp|Q65SE1|ORN_MANSM RecName: Full=Oligoribonuclease gi|52307619|gb|AAU38119.1| Orn protein [Mannheimia succiniciproducens MBEL55E] Length = 186 Score = 41.8 bits (96), Expect = 0.075, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 15/19 (78%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD +N+RIIEI Sbjct: 11 IDLEMTGLDPENERIIEIA 29 >gi|86139894|ref|ZP_01058460.1| exonuclease I [Roseobacter sp. MED193] gi|85823523|gb|EAQ43732.1| exonuclease I [Roseobacter sp. MED193] Length = 459 Score = 41.8 bits (96), Expect = 0.075, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 56/224 (25%), Gaps = 14/224 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + +D+ETTG+ + D+ ++ A+ + + + Sbjct: 1 MDFVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDRVNIRCRLAPHILPSPQALVVTRV 60 Query: 67 DEFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 PS S+F + + F L++ L P+ Sbjct: 61 TPDQLIDPSLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQNLSPNIYAT 120 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + R + + G+ + K+ F Sbjct: 121 QFNGNTRFDILPAVY-AAYVRHPGLLVWPTDD---------TGRRSFKLDRLAPANGFNA 170 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 D E + R L++ + + H +Q Sbjct: 171 HNAHDALGDVEATIHIARLIATRSPALWSELID---NAHKARVQ 211 >gi|308389962|gb|ADO32282.1| putative oligoribonuclease [Neisseria meningitidis alpha710] Length = 215 Score = 41.8 bits (96), Expect = 0.076, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + DRIIE+ + Sbjct: 38 LDMEMTGLNPETDRIIEVAMI 58 >gi|325114145|emb|CBZ49703.1| conserved hypothetical protein [Neospora caninum Liverpool] Length = 496 Score = 41.8 bits (96), Expect = 0.077, Method: Composition-based stats. Identities = 36/243 (14%), Positives = 65/243 (26%), Gaps = 31/243 (12%) Query: 13 DIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTGL ++ I +IG V D + ++ +++ L Sbjct: 257 DLETTGLCIQSCEITQIGCVPRLFRDGR-----WH-YVNCPVLRDAEAHLWGEPHVFSAY 310 Query: 71 KDKPSFSSIFSEFWDFF------------------NEQNAEWIAHNAKFDVGFINAELQR 112 S+ A+ IA++ +DV Sbjct: 311 IRIHSWIPKKVRDLTGITKALLNKKGIPLETALLKWAGWAQKIANSLDYDVPIWFVAHSG 370 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT---ISHRSKHGALLDSHLLSD 169 + D R + A + + C+ T SH LS Sbjct: 371 SSFDIPVLLRHETSTRTALKMFSRGCFFRHVGCEYTVDTLTLSRALPWPNVREQSHSLSL 430 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 +Y ++ N D E L + R EE + + + ++ Sbjct: 431 LYAQLTGRSRDRNDEHNAVGDSIALAELMGKEPF-LSAWQRMKVGRKLCEEFE-YQRRLK 488 Query: 230 TLG 232 L Sbjct: 489 FLN 491 >gi|313682834|ref|YP_004060572.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense DSM 16994] gi|313155694|gb|ADR34372.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense DSM 16994] Length = 293 Score = 41.8 bits (96), Expect = 0.077, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 56/183 (30%), Gaps = 7/183 (3%) Query: 7 MRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR I+ D ETTG + DRI ++ + + + P + H Sbjct: 1 MRHTIILDTETTGAG-EVDRICQLSYLVCDEKGEILELHNDLCTPPLPISFEAMAIHHIT 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + N + + NA+FD+G + E + +D R++ Sbjct: 60 PEMLTGAPKCIETSAFNRLAELNTPDNLMVIQNAEFDLGMLAKEGMGLEMKLVDTFRVLR 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHR-----SKHGALLDSHLLSDVYIKMMVGGSQ 180 H + + H AL D +L +Y K++ + Sbjct: 120 AWHPLDTPHGLQFKRYQWGLYHKEQPLIDKLGIEIKAHDALGDVIVLKHLYEKLLESHNA 179 Query: 181 INF 183 Sbjct: 180 EGM 182 >gi|46190895|ref|ZP_00206604.1| COG1949: Oligoribonuclease (3'->5' exoribonuclease) [Bifidobacterium longum DJO10A] gi|189440035|ref|YP_001955116.1| Oligoribonuclease [Bifidobacterium longum DJO10A] gi|189428470|gb|ACD98618.1| Oligoribonuclease [Bifidobacterium longum DJO10A] Length = 214 Score = 41.8 bits (96), Expect = 0.077, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 3/132 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D ETTGLD ++E+G ++T + + + P+ +N A + + Sbjct: 29 IDTETTGLDPNQCELLEVGMQVTDLKAETRGGSLHLIVHPDNVRN--WANHPEMLKAYEM 86 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +E + + + + L + R +D Sbjct: 87 HLANGLMLACAEAPKTGYDYKHTALNIHEFLNDQLSQYTLHPAGTNVDFDLRQLDVHLSR 146 Query: 131 RRKHPSSRNDLN 142 +HP ++ + Sbjct: 147 HLEHPITQGLHH 158 >gi|331245678|ref|XP_003335475.1| hypothetical protein PGTG_17328 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309314465|gb|EFP91056.1| hypothetical protein PGTG_17328 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 200 Score = 41.8 bits (96), Expect = 0.077, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 7/34 (20%) Query: 12 FDIETTGLDSKNDRIIEIGAV-------ELLDYS 38 D E TGLD D+IIEI + EL D Sbjct: 18 IDCEMTGLDVTVDQIIEIACIITDKDLKELDDGI 51 >gi|291164801|gb|ADD80831.1| oligoribonuclease [Rhodococcus phage ReqiDocB7] Length = 207 Score = 41.8 bits (96), Expect = 0.077, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 48/182 (26%), Gaps = 15/182 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA------VELLDY----SKTNRTFQVFLCPNGRKNSPE 58 I+ D+ETTGL I+E+G +E++D T++++ R Sbjct: 6 FILLDLETTGLKPSEGHILELGMALYSPQLEMIDAFQSVCLTDQSYSFL-----RGAPGS 60 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 G + + + + + V + N Sbjct: 61 EDWKSGNVAYDMHVNSGLLAEVMDLSKQDILGDGNDFGPYHLYTVMHDAINWLKSNDVER 120 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++ R + + Y + + L + +K++ Sbjct: 121 GHPLCGSSIHFDREWLNFFGTEEFNGYFHYRNIDFSSISEHTKVINPKLYEKAMKLLAPT 180 Query: 179 SQ 180 Sbjct: 181 KS 182 >gi|94676725|ref|YP_589014.1| oligoribonuclease [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|172046199|sp|Q1LSQ0|ORN_BAUCH RecName: Full=Oligoribonuclease gi|94219875|gb|ABF14034.1| oligoribonuclease [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 184 Score = 41.8 bits (96), Expect = 0.077, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ + DRI+EI Sbjct: 10 IDLEMTGLNPEQDRILEIA 28 >gi|307544322|ref|YP_003896801.1| oligoribonuclease [Halomonas elongata DSM 2581] gi|307216346|emb|CBV41616.1| oligoribonuclease [Halomonas elongata DSM 2581] Length = 197 Score = 41.8 bits (96), Expect = 0.078, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 16/23 (69%) Query: 8 RKIVFDIETTGLDSKNDRIIEIG 30 R + D+E TGLD + +RIIE+ Sbjct: 14 RLVWIDLEMTGLDPERERIIEVA 36 >gi|260903685|ref|ZP_05912007.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Brevibacterium linens BL2] Length = 578 Score = 41.8 bits (96), Expect = 0.078, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 16/26 (61%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVE 33 R + FD+ETTG+D RI+ VE Sbjct: 360 RLVGFDLETTGVDPATARIVTAAFVE 385 >gi|239995038|ref|ZP_04715562.1| ribonuclease T [Alteromonas macleodii ATCC 27126] Length = 49 Score = 41.8 bits (96), Expect = 0.078, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 17/26 (65%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL 35 +V D+ET G ++ D ++E+ AV + Sbjct: 18 VVIDVETAGFNAGTDALLELAAVTVK 43 >gi|269120725|ref|YP_003308902.1| exonuclease RNase T and DNA polymerase III [Sebaldella termitidis ATCC 33386] gi|268614603|gb|ACZ08971.1| Exonuclease RNase T and DNA polymerase III [Sebaldella termitidis ATCC 33386] Length = 195 Score = 41.8 bits (96), Expect = 0.078, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 58/179 (32%), Gaps = 15/179 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFL--CPN-----GRKN 55 + FD+ET G ++ I A+++ + + + F P G N Sbjct: 4 NIVFFDVETNG--KVGSSVLSISAIKVNFNGEIQKWEKVGEYDRFYFRNPGEAINMGAIN 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P E + F + A ++AHN KFD FI L+ Sbjct: 62 VNGLTDDVLEKKREGTIYPVHFKDDIESFYSFCQDTAHYVAHNIKFDRSFIPFMLKNQFD 121 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L+ I+ LN + Y I S H +L D + V+ KM Sbjct: 122 TMLENVEIVKAGINEYYGT-YKWPKLNECARFYNIPFDDSSLHESLYDVLITFRVFYKM 179 >gi|71900855|ref|ZP_00682972.1| Exonuclease [Xylella fastidiosa Ann-1] gi|71729379|gb|EAO31493.1| Exonuclease [Xylella fastidiosa Ann-1] Length = 193 Score = 41.8 bits (96), Expect = 0.078, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 49/176 (27%), Gaps = 9/176 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66 R I D+E TGLD+ D IIEI V T+ V P + P + Sbjct: 13 RLIWIDLEMTGLDTHRDSIIEIATV------VTDAQLNVLAEGPEFAISHPLNVLEAMDE 66 Query: 67 DEFLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + S + + + + + G I +D R + Sbjct: 67 WNRNQHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKTGASPMCGNSICQDRRFLHRQM 126 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L + L L + +I + + I + + Sbjct: 127 PCLERYFHYRNLDVSTLKELAGCWSPSILDGVVKTSSHTALSDIYDSIAELRHYRK 182 >gi|298252322|ref|ZP_06976124.1| Exonuclease RNase T and DNA polymerase III [Ktedonobacter racemifer DSM 44963] gi|297545742|gb|EFH79611.1| Exonuclease RNase T and DNA polymerase III [Ktedonobacter racemifer DSM 44963] Length = 471 Score = 41.8 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 14/171 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD ETTGLDS+ D+II+ AV + ++ P S A ++HGIT+ L Sbjct: 27 FDSETTGLDSE-DQIIQW-AVCNQEGQLLG---SGYIKP-TVPISEGAFEIHGITEAQLA 80 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI-- 129 + P F+ + D + +N+ FD+G + + + + Sbjct: 81 NAPLFAESWPTIRDLLTASGKTVVIYNSNFDIGMLWSSARAHGIPMRWDEIKAECAMQLF 140 Query: 130 ------ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 S + + H A D+ + + ++ Sbjct: 141 ASFYGEYHEYWGSYTWQKLTTAISHLNITVPGEAHNAEHDAAATAHIIRQL 191 >gi|260577531|ref|ZP_05845471.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium ATCC 43734] gi|258604335|gb|EEW17572.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium ATCC 43734] Length = 214 Score = 41.8 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 15/27 (55%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS 38 FD+ETTG+D K RI+ V + Sbjct: 4 FDLETTGVDPKTARIVTSALVTIKGRE 30 >gi|227549657|ref|ZP_03979706.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078234|gb|EEI16197.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM 44291] Length = 98 Score = 41.8 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 3/81 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + + TTG+ R++ I AV D F + P HG+ Sbjct: 7 YVAVSVVTTGIHPSTGRLLTIDAVTFDDDGAIGEEFHSVF---STGSDPGPRHNHGLEPG 63 Query: 69 FLKDKPSFSSIFSEFWDFFNE 89 P FS ++ Sbjct: 64 DFAQAPRFSRHLKTLDRLIDD 84 >gi|94984265|ref|YP_603629.1| exonuclease, RNase T and DNA polymerase III [Deinococcus geothermalis DSM 11300] gi|94554546|gb|ABF44460.1| exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T [Deinococcus geothermalis DSM 11300] Length = 188 Score = 41.8 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 5/171 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--- 66 I D ET G D ++ +G V L + R + + + EA+ ++GI Sbjct: 15 IFVDTETGGRDPARHPLLTVGLVTLTPQGEVTRPLHLRVRHEHYEVEEEAMAVNGIDLAT 74 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 P + + + HN +D+GF+ L + Sbjct: 75 HHATAQAPEEVAEAVRAYARAVGRVM-LGGHNLAYDLGFLRWLLPDLKSIFRRGRVDTKL 133 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITIS-HRSKHGALLDSHLLSDVYIKMMV 176 + + + + H AL D+ + + VY +++ Sbjct: 134 TAQFLLHAGILPRKVGTPLDQLAKYFGLAYQAHDALEDARVTAWVYAELLR 184 >gi|297625994|ref|YP_003687757.1| Oligoribonuclease [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921759|emb|CBL56317.1| Oligoribonuclease [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 223 Score = 41.8 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 1/56 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD ND +IE+ + V + P+ + + Sbjct: 5 IDCEMTGLDLANDELIEVACLVTDGELNVQGDGIDVLVQPSKHALDHMGEFVTEMH 60 >gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479] gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479] Length = 653 Score = 41.8 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 6/32 (18%) Query: 11 VFDIETTGLDSKND--RIIEIGA----VELLD 36 D ETTGLD +D R+I+I A V ++D Sbjct: 100 AIDTETTGLDPHSDRLRLIQISAPGIPVLVID 131 >gi|282598821|ref|YP_003359140.1| putative exonuclease [Clavibacter phage CMP1] gi|262212609|gb|ACY35945.1| putative exonuclease [Clavibacter phage CMP1] Length = 236 Score = 41.8 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ-VFLCPNGRKNSPEALKLHGITDEF 69 VFD ET+G+D +NDRI+ + L+D T F + P G A +HGIT E Sbjct: 9 VFDTETSGVDVENDRIVT-AFIGLMDPDGTMTEFHEWLIDP-GIPIPEGASDIHGITTEK 66 Query: 70 LK 71 Sbjct: 67 AH 68 >gi|170782319|ref|YP_001710652.1| DNA polymerase III subunit epsilon [Clavibacter michiganensis subsp. sepedonicus] gi|169156888|emb|CAQ02056.1| putative exonuclease [Clavibacter michiganensis subsp. sepedonicus] Length = 233 Score = 41.8 bits (96), Expect = 0.080, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 17/40 (42%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 FD+ETTG+D + RI+ V L + P Sbjct: 12 FDLETTGVDVETARIVTACIVVLDAQGEVVERHDWLADPG 51 >gi|94500535|ref|ZP_01307066.1| oligoribonuclease [Oceanobacter sp. RED65] gi|94427325|gb|EAT12304.1| oligoribonuclease [Oceanobacter sp. RED65] Length = 185 Score = 41.8 bits (96), Expect = 0.080, Method: Composition-based stats. Identities = 14/26 (53%), Positives = 16/26 (61%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIG 30 NK I D+E TGL+ DRIIEI Sbjct: 8 NKHNLIWIDLEMTGLEPAQDRIIEIA 33 >gi|26379605|dbj|BAB29127.2| unnamed protein product [Mus musculus] Length = 345 Score = 41.8 bits (96), Expect = 0.080, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G ++ IIE V L ++ TFQ ++ P S + L G Sbjct: 128 IIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNDQLSEFCIGLTG 187 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + + ++ + + + + + Sbjct: 188 ITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLSRLKHP 247 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G+ R H L DS ++ + I+M+ Sbjct: 248 AFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAIRML 306 Query: 176 VGGSQINFG 184 G ++ Sbjct: 307 QDGCELRIN 315 >gi|306819092|ref|ZP_07452806.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35239] gi|304648068|gb|EFM45379.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35239] Length = 305 Score = 41.8 bits (96), Expect = 0.081, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 7 MRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLH 63 MR+ + D ET + + +G V K + ++ L P+ +P + +H Sbjct: 3 MREFVAIDFET--ANEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWVH 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT E ++D P +S I + F + +AHN FD ++ + + R Sbjct: 61 GITSEDVQDAPQWSDIADQVMTFIGD--RPIVAHNMAFDGYVLSDLASLYGTEEIPNRRF 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + Y H A D+ ++ +M Q F Sbjct: 119 CTVRLARKILADKLERKTLDEVFDYYFPGEVFDHHHADADAQAAGMIFARM-----QHEF 173 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 GF+ + + P I R ++ EEL + Sbjct: 174 GFEKLSELCPPTKNSHKPPIHPGMRSD----QLAAEELIK 209 >gi|306835906|ref|ZP_07468899.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC 49726] gi|304568180|gb|EFM43752.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC 49726] Length = 233 Score = 41.8 bits (96), Expect = 0.081, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39 R + FD+ETT + K+ RI+ V + Sbjct: 17 RMLAFDLETTSANPKDARIVTSALVRIDGRDV 48 >gi|269977446|ref|ZP_06184418.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1] gi|269934362|gb|EEZ90924.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1] Length = 303 Score = 41.8 bits (96), Expect = 0.081, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 7 MRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLH 63 MR+ + D ET + + +G V K + ++ L P+ +P + +H Sbjct: 1 MREFVAIDFET--ANEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWVH 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT E ++D P +S I + F + +AHN FD ++ + + R Sbjct: 59 GITSEDVQDAPQWSDIADQVMTFIGD--RPIVAHNMAFDGYVLSDLASLYGTEEIPNRRF 116 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + Y H A D+ ++ +M Q F Sbjct: 117 CTVRLARKILADKLERKTLDEVFDYYFPGEVFDHHHADADAQAAGMIFARM-----QHEF 171 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 GF+ + + P I R ++ EEL + Sbjct: 172 GFEKLSELCPPTKNSHKPPIHPGMRSD----QLAAEELIK 207 >gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] Length = 662 Score = 41.8 bits (96), Expect = 0.081, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 8/42 (19%) Query: 10 IV-FDIETTGLDSKNDRI--IEIGA-----VELLDYSKTNRT 43 +V DIETTGLD I I+I A + + TN+ Sbjct: 68 VVGLDIETTGLDPHTSEISLIQIAAPNRPVILIEFRGITNKE 109 >gi|224124082|ref|XP_002330100.1| predicted protein [Populus trichocarpa] gi|222871234|gb|EEF08365.1| predicted protein [Populus trichocarpa] Length = 470 Score = 41.8 bits (96), Expect = 0.081, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 12/102 (11%) Query: 4 KNKMRKIVFDIETT-----GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCP-NGRKNS 56 +NK FD+ETT G + I+E GA+ + R++ + P N + S Sbjct: 2 ENKTEIAFFDVETTVPTRPG---QGYAILEFGAILVCPQKLEEIRSYSTLVRPSNPKLIS 58 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98 +++ +GI E + PSF+ I +D + W HN Sbjct: 59 SLSVRCNGIIPEAVVSAPSFADIADTVYDILHG--RIWAGHN 98 >gi|255324551|ref|ZP_05365668.1| DNA polymerase III subunit epsilon [Corynebacterium tuberculostearicum SK141] gi|255298457|gb|EET77757.1| DNA polymerase III subunit epsilon [Corynebacterium tuberculostearicum SK141] Length = 223 Score = 41.8 bits (96), Expect = 0.082, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 15/32 (46%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39 R + FD+ETT + K RI+ V + Sbjct: 7 RMLAFDLETTSANPKEARIVTSALVRIDGRDV 38 >gi|227548676|ref|ZP_03978725.1| oligoribonuclease [Corynebacterium lipophiloflavum DSM 44291] gi|227079239|gb|EEI17202.1| oligoribonuclease [Corynebacterium lipophiloflavum DSM 44291] Length = 211 Score = 41.8 bits (96), Expect = 0.082, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 15/25 (60%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD I+E+ A+ Sbjct: 11 RIVWIDLEMTGLDPDKHVIVEVAAL 35 >gi|328675229|gb|AEB27904.1| Oligoribonuclease [Francisella cf. novicida 3523] Length = 178 Score = 41.8 bits (96), Expect = 0.083, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD N RIIEI A+ Sbjct: 10 IDLEMTGLDVDNCRIIEIAAI 30 >gi|260556115|ref|ZP_05828334.1| oligoribonuclease Orn [Acinetobacter baumannii ATCC 19606] gi|260410170|gb|EEX03469.1| oligoribonuclease Orn [Acinetobacter baumannii ATCC 19606] Length = 163 Score = 41.8 bits (96), Expect = 0.083, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 21/37 (56%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37 M R I D+E TGLD+ ND+IIEI + D+ Sbjct: 1 MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDH 37 >gi|217980123|ref|YP_002364173.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T] gi|217508294|gb|ACK55079.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T] Length = 201 Score = 41.8 bits (96), Expect = 0.083, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 13/169 (7%) Query: 11 VFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL D ++E+ ++ + P+G EA +HGITD Sbjct: 24 ILDTETTGL---GDDAEVVELAVIDCAGAVL----LDTLVRPSG-PVPAEAAAIHGITDA 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P++S + + F + +N +FDV I+ +R + Sbjct: 76 MLAGAPTWSELHARFCGLVEGRQVV--IYNHEFDVRVISQTARRYGLQAPQGFDQVLDPG 133 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + G + A + + + + Sbjct: 134 RIHCAMQAYAEFRGEWSAEKGQYRWQKLSAAAQQQG-VTVENAHRALGD 181 >gi|225438656|ref|XP_002277040.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296082445|emb|CBI21450.3| unnamed protein product [Vitis vinifera] Length = 303 Score = 41.8 bits (96), Expect = 0.083, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 3/46 (6%) Query: 10 IVFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNG 52 + FD+ETT + R ++E GA+ + ++ + P Sbjct: 16 VFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTLIRPGD 61 >gi|147791948|emb|CAN61478.1| hypothetical protein VITISV_013817 [Vitis vinifera] Length = 293 Score = 41.8 bits (96), Expect = 0.083, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 3/46 (6%) Query: 10 IVFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNG 52 + FD+ETT + R ++E GA+ + ++ + P Sbjct: 49 VFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTLIRPGD 94 >gi|121705836|ref|XP_001271181.1| RNA exonuclease Rex2, putative [Aspergillus clavatus NRRL 1] gi|119399327|gb|EAW09755.1| RNA exonuclease Rex2, putative [Aspergillus clavatus NRRL 1] Length = 217 Score = 41.8 bits (96), Expect = 0.083, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 12 FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD + D+I++I + + + +RT F+ + + Sbjct: 13 IDCEMTGLDPETDQILQICCYITDANLTLLDRTGFETIIHHPRSTLEAMSPWCIDTH 69 >gi|300780594|ref|ZP_07090449.1| oligoribonuclease [Corynebacterium genitalium ATCC 33030] gi|300533580|gb|EFK54640.1| oligoribonuclease [Corynebacterium genitalium ATCC 33030] Length = 217 Score = 41.8 bits (96), Expect = 0.084, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 16/25 (64%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD + I+E+ A+ Sbjct: 18 RIVWIDLEMTGLDPQRHVIVEVAAL 42 >gi|299144369|ref|ZP_07037449.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518854|gb|EFI42593.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 312 Score = 41.8 bits (96), Expect = 0.085, Method: Composition-based stats. Identities = 20/40 (50%), Positives = 23/40 (57%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN 41 I KN IV DIETTGL K D I IG +E+ +KT Sbjct: 20 ILKNFKNSIVLDIETTGLSRKYDAIFLIGIIEIEKNTKTK 59 >gi|294139250|ref|YP_003555228.1| oligoribonuclease [Shewanella violacea DSS12] gi|293325719|dbj|BAJ00450.1| oligoribonuclease [Shewanella violacea DSS12] Length = 181 Score = 41.8 bits (96), Expect = 0.085, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + DR+IEI Sbjct: 11 VDLEMTGLDPETDRVIEIA 29 >gi|330876090|gb|EGH10239.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964631|gb|EGH64891.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091] Length = 180 Score = 41.8 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 5/113 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63 +V D+E TT G +IEIGA + + F+ F+ P R + +L Sbjct: 4 WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCKELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + ++++ +F + + A + + D E + + Sbjct: 64 HINQSNIDSAAPLTTVWPQFERWLSHHRARVVGWASWGDYDRQQLEEEWRHHQ 116 >gi|319944217|ref|ZP_08018493.1| oligoribonuclease [Lautropia mirabilis ATCC 51599] gi|319742512|gb|EFV94923.1| oligoribonuclease [Lautropia mirabilis ATCC 51599] Length = 236 Score = 41.8 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 15/25 (60%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGL DRIIE+ V Sbjct: 56 RLVWLDMEMTGLHPDIDRIIEVAMV 80 >gi|156972480|ref|YP_001443387.1| oligoribonuclease [Vibrio harveyi ATCC BAA-1116] gi|166216591|sp|A7MZ48|ORN_VIBHB RecName: Full=Oligoribonuclease gi|156524074|gb|ABU69160.1| hypothetical protein VIBHAR_00112 [Vibrio harveyi ATCC BAA-1116] Length = 181 Score = 41.8 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +IIEI ++ Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31 >gi|91228387|ref|ZP_01262313.1| oligoribonuclease [Vibrio alginolyticus 12G01] gi|91188028|gb|EAS74334.1| oligoribonuclease [Vibrio alginolyticus 12G01] Length = 181 Score = 41.8 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +IIEI ++ Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31 >gi|262393026|ref|YP_003284880.1| oligoribonuclease [Vibrio sp. Ex25] gi|262336620|gb|ACY50415.1| oligoribonuclease [Vibrio sp. Ex25] Length = 181 Score = 41.8 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +IIEI ++ Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31 >gi|299771588|ref|YP_003733614.1| oligoribonuclease [Acinetobacter sp. DR1] gi|298701676|gb|ADI92241.1| oligoribonuclease [Acinetobacter sp. DR1] Length = 188 Score = 41.8 bits (96), Expect = 0.087, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 21/37 (56%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37 M R I D+E TGLD+ ND+IIEI + D+ Sbjct: 1 MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDH 37 >gi|15837858|ref|NP_298546.1| oligoribonuclease [Xylella fastidiosa 9a5c] gi|11133792|sp|Q9PDX2|ORN_XYLFA RecName: Full=Oligoribonuclease gi|9106239|gb|AAF84066.1|AE003959_8 oligoribonuclease [Xylella fastidiosa 9a5c] Length = 193 Score = 41.8 bits (96), Expect = 0.087, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 46/176 (26%), Gaps = 9/176 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I D+E TGLD+ D IIEI V T+ V S L + + Sbjct: 13 RLIWIDLEMTGLDTHRDSIIEIATV------VTDAQLNVLAEGPEFAISHPLQMLEAMDE 66 Query: 68 EFLKDKPS---FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + + + + G I +D R + Sbjct: 67 WNRNQHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKTGASPMCGNSICQDRRFLHRQM 126 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L + L L + +I + + I + + Sbjct: 127 PCLERYFHYRNLDVSTLKELAGCWAPSILDGVVKTSSHTALSDIYDSIAELRHYRK 182 >gi|315650719|ref|ZP_07903774.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315487023|gb|EFU77350.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 220 Score = 41.8 bits (96), Expect = 0.088, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 7/88 (7%) Query: 7 MRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEA 59 M+ IV D+E ++ K IEIGA+ L + + +F+ ++ P + P Sbjct: 1 MKHIVVDLEMNSVEKKYKNLDCTMETIEIGAIMLDENYQEISSFRTYVKPEYNNRIRPLI 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFF 87 +L GIT + + + P F F ++ Sbjct: 61 SRLTGITYDMVMNAPKFDEALKMFSNWC 88 >gi|254451818|ref|ZP_05065255.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238] gi|198266224|gb|EDY90494.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238] Length = 500 Score = 41.8 bits (96), Expect = 0.088, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 16/26 (61%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAV 32 M + +D+ETTGL D+ ++ A+ Sbjct: 1 MDFVFYDLETTGLSPAFDQPLQFAAI 26 >gi|294506709|ref|YP_003570767.1| DNA polymerase III, epsilon chain [Salinibacter ruber M8] gi|294343037|emb|CBH23815.1| DNA polymerase III, epsilon chain [Salinibacter ruber M8] Length = 211 Score = 41.8 bits (96), Expect = 0.088, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 6/86 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTG + D +IE+G V + P + A ++HGITDE Sbjct: 42 VFLDTETTGSGPQ-DAVIELGVVAAQGEVL----LHTLVAP-LAPVTRGARRVHGITDEE 95 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWI 95 L D P F ++ + W Sbjct: 96 LADAPPFPTVADRLDTVLADAECVWT 121 >gi|149041580|gb|EDL95421.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_e [Rattus norvegicus] Length = 113 Score = 41.8 bits (96), Expect = 0.088, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66 >gi|149041581|gb|EDL95422.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_f [Rattus norvegicus] Length = 154 Score = 41.8 bits (96), Expect = 0.088, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66 >gi|13097555|gb|AAH03502.1| REXO2 protein [Homo sapiens] Length = 79 Score = 41.8 bits (96), Expect = 0.088, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66 >gi|26355291|dbj|BAC41132.1| unnamed protein product [Mus musculus] Length = 121 Score = 41.8 bits (96), Expect = 0.088, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66 >gi|54310468|ref|YP_131488.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9] gi|46914911|emb|CAG21686.1| putative DNA polymerase III, epsilon subunit [Photobacterium profundum SS9] Length = 207 Score = 41.8 bits (96), Expect = 0.088, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLC 49 + D ETT LD + ++ I A V + T+++ + L Sbjct: 31 VSVDCETTSLDPHSAELVTIAATVIKNNRILTSKSIHLTLR 71 >gi|321223519|gb|EFX48584.1| Putative exonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 194 Score = 41.8 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 54/175 (30%), Gaps = 10/175 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL + I+EI ++ + + P + EA+ +HGIT+E Sbjct: 20 YLFIDTETTGLG-DDAEIVEICIIDSHGFIM----LNTLIKP-TKPIPDEAIAIHGITNE 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+++ I + F +NA FD+ I + ++ Sbjct: 74 MVAFAPAWTDICGAVEEIFRRFGFV--IYNADFDLRLIRQTYALNERPSEGAPWMLAA-- 129 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + G A + + + + Sbjct: 130 HSVCAMKLYAEYRGEPGRFNGYKWHKLVDAAAHEGVVVEDKAHRALADCKMTLGL 184 >gi|227501727|ref|ZP_03931776.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC 49725] gi|227077752|gb|EEI15715.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC 49725] Length = 223 Score = 41.8 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39 R + FD+ETT + K+ RI+ V + Sbjct: 7 RMLAFDLETTSANPKDARIVTSALVRIDGRDV 38 >gi|148982513|ref|ZP_01816787.1| oligoribonuclease [Vibrionales bacterium SWAT-3] gi|145960438|gb|EDK25820.1| oligoribonuclease [Vibrionales bacterium SWAT-3] Length = 169 Score = 41.8 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +IIEI Sbjct: 11 VDLEMTGLDPETHKIIEIA 29 >gi|46447255|ref|YP_008620.1| hypothetical protein pc1621 [Candidatus Protochlamydia amoebophila UWE25] gi|46400896|emb|CAF24345.1| unknown protein [Candidatus Protochlamydia amoebophila UWE25] Length = 193 Score = 41.8 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 5/153 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I DIE++GLDS + R +EI +++D +T + P + Sbjct: 1 MLAIFLDIESSGLDSFHHRALEIAF-KVID-VRTGEERLTY---QSIVKQPLEVWEKRDL 55 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ + + + I ++ K G Q D S+I+D Sbjct: 56 ASIEINGFTWEKLLLGQEEAVVKSEIVQIFNDLKIQRGRAVYICQNPAFDRGFFSQIVDV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 + + P D S+ + Sbjct: 116 YTQEKYHWPYHWLDFASMYWALQFKFYTQKHEH 148 >gi|329120336|ref|ZP_08249004.1| oligoribonuclease [Neisseria bacilliformis ATCC BAA-1200] gi|327462677|gb|EGF09000.1| oligoribonuclease [Neisseria bacilliformis ATCC BAA-1200] Length = 184 Score = 41.8 bits (96), Expect = 0.090, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL + DRIIE+ + Sbjct: 12 LDMEMTGLSPETDRIIEVAVI 32 >gi|304414192|ref|ZP_07395560.1| oligoribonuclease (3'->5' exoribonuclease) [Candidatus Regiella insecticola LSR1] gi|304283406|gb|EFL91802.1| oligoribonuclease (3'->5' exoribonuclease) [Candidatus Regiella insecticola LSR1] Length = 181 Score = 41.8 bits (96), Expect = 0.090, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + + K I D+E TGL ++DRIIEI Sbjct: 1 MTEIKNNLIWIDLEMTGLYPEHDRIIEIA 29 >gi|254360517|ref|ZP_04976666.1| exoribonuclease II [Mannheimia haemolytica PHL213] gi|261492357|ref|ZP_05988919.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496143|ref|ZP_05992551.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str. OVINE] gi|153091057|gb|EDN73062.1| exoribonuclease II [Mannheimia haemolytica PHL213] gi|261308245|gb|EEY09540.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312040|gb|EEY13181.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 184 Score = 41.8 bits (96), Expect = 0.090, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + +N+ I D+E TGLD + +RIIEI Sbjct: 1 MAQNEQNLIWIDLEMTGLDPEKERIIEIA 29 >gi|68536400|ref|YP_251105.1| DNA polymerase III subunit epsilon [Corynebacterium jeikeium K411] gi|68263999|emb|CAI37487.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium K411] Length = 227 Score = 41.8 bits (96), Expect = 0.090, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 15/27 (55%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS 38 FD+ETTG+D K RI+ V + Sbjct: 17 FDLETTGVDPKTARIVTSALVTIKGRE 43 >gi|28198432|ref|NP_778746.1| oligoribonuclease [Xylella fastidiosa Temecula1] gi|182681104|ref|YP_001829264.1| oligoribonuclease [Xylella fastidiosa M23] gi|32129804|sp|Q87E07|ORN_XYLFT RecName: Full=Oligoribonuclease gi|28056516|gb|AAO28395.1| oligoribonuclease [Xylella fastidiosa Temecula1] gi|182631214|gb|ACB91990.1| Exonuclease RNase T and DNA polymerase III [Xylella fastidiosa M23] gi|307579552|gb|ADN63521.1| oligoribonuclease [Xylella fastidiosa subsp. fastidiosa GB514] Length = 193 Score = 41.8 bits (96), Expect = 0.090, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 50/176 (28%), Gaps = 9/176 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66 R I D+E TGLD+ D IIEI V T+ V P + P + Sbjct: 13 RLIWIDLEMTGLDTHRDSIIEIATV------VTDAQLNVLAEGPEFAISHPLNVLEAMDE 66 Query: 67 DEFLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + S + + + + + +G I +D R + Sbjct: 67 WNRNQHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKIGASPMCGNSICQDRRFLHRQM 126 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L + L L + +I + + I + + Sbjct: 127 PCLERYFHYRNLDVSTLKELAGCWSPSILDGVVKTSSHTALSDIYDSIAELRHYRK 182 >gi|316985472|gb|EFV64419.1| exonuclease family protein [Neisseria meningitidis H44/76] gi|325139523|gb|EGC62063.1| oligoribonuclease [Neisseria meningitidis CU385] gi|325143758|gb|EGC66075.1| oligoribonuclease [Neisseria meningitidis M01-240013] Length = 203 Score = 41.8 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + DRIIE+ + Sbjct: 26 LDMEMTGLNPETDRIIEVAMI 46 >gi|269964116|ref|ZP_06178417.1| oligoribonuclease [Vibrio harveyi 1DA3] gi|269831150|gb|EEZ85308.1| oligoribonuclease [Vibrio harveyi 1DA3] Length = 181 Score = 41.8 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +IIEI ++ Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31 >gi|154483908|ref|ZP_02026356.1| hypothetical protein EUBVEN_01613 [Eubacterium ventriosum ATCC 27560] gi|149735399|gb|EDM51285.1| hypothetical protein EUBVEN_01613 [Eubacterium ventriosum ATCC 27560] Length = 334 Score = 41.8 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 69/202 (34%), Gaps = 9/202 (4%) Query: 25 RIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFSE 82 IIEIGAV + D +FQ + P +K + ++ T+E L D F + + Sbjct: 28 EIIEIGAVRVSDDRKTIVDSFQQVIKPRVFKKLHYKIQEITHFTEEELNDGKDFRKVIRD 87 Query: 83 FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR-RKHPSSRNDL 141 F ++ + + N + + + P +D + R Sbjct: 88 FLEWCGDDYIFCTWGSMDLTELQKNMKHYNLERVLDFPLFYVDLQKMFSLRYDDGHMKRN 147 Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP 201 + Y H AL D++ + + M + T KEE+ V Sbjct: 148 LTSAVEYLNIQEEHEFHRALSDAYYTARILQSMDYDKYKDRLSIDTFYSPRIKEEEIFVR 207 Query: 202 NISLLKRDKPLFTR--ITKEEL 221 K L TR +TK+EL Sbjct: 208 FDEYTK----LVTREFLTKDEL 225 >gi|312870293|ref|ZP_07730421.1| exonuclease [Lactobacillus oris PB013-T2-3] gi|311094177|gb|EFQ52493.1| exonuclease [Lactobacillus oris PB013-T2-3] Length = 178 Score = 41.8 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 7/166 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET +K + + D F + P +++HGI Sbjct: 1 MNFIAMDFET--ASAKRYSACSLALTIVRDNQ-IADEFYTLINPQTPFF-WRNVQIHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P+F E F IAHN +FD G + + L+ +P + Sbjct: 57 ERDVADAPTF-PEVWEHIKGFYTPEKLVIAHNNRFDNGVLKSTLEHYGIEPPAYQTLDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +S R S LN++C I + H H AL D+ +++ + Sbjct: 116 VSSRRLLPGLSNYKLNTVCDALNIDLHH--HHNALDDAQACANILL 159 >gi|118602537|ref|YP_903752.1| ribonuclease T [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567476|gb|ABL02281.1| RNAse T [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 195 Score = 41.8 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 19/190 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCP-- 50 M+ K+++R +V D ET G + K D ++EI A+ ++ + + P Sbjct: 1 MLIKDRIRGYLPVVIDTETGGFNEKTDAMLEICAIVIGIDKMNNLYPKGSQ-HFHIEPFK 59 Query: 51 -NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF------NEQNAEWIAHNAKFDV 103 ++S + + F +I + + + A + HNA FD+ Sbjct: 60 GGMLESSALKFNGIDVDNPFRMAVKEIDAIKQIYTKVYAELKQESCTRAILVGHNAFFDL 119 Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 GF++A R H ++ K I H AL D Sbjct: 120 GFLHAATDRCKLKSPFHQFSTLDTVSLSALHYGETVLAKAMRK-ANIEWDDSCAHSALYD 178 Query: 164 SHLLSDVYIK 173 + ++++ K Sbjct: 179 TQKTAELFCK 188 >gi|307106672|gb|EFN54917.1| hypothetical protein CHLNCDRAFT_134628 [Chlorella variabilis] Length = 786 Score = 41.8 bits (96), Expect = 0.093, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLH 63 + FD+ET+GL K I E GAV + TF ++C P G PEA K Sbjct: 30 VAFDLETSGLG-KKACITEFGAV----GAGGTATFHEYVCLPPGVVMDPEATKTT 79 >gi|262273269|ref|ZP_06051084.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] gi|262222642|gb|EEY73952.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] Length = 207 Score = 41.8 bits (96), Expect = 0.093, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 14/31 (45%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 + D ETT LD ++ I A ++ + Sbjct: 31 VALDCETTSLDPHKAELVTIAATKIRGNTIV 61 >gi|73540610|ref|YP_295130.1| oligoribonuclease [Ralstonia eutropha JMP134] gi|72118023|gb|AAZ60286.1| Exonuclease [Ralstonia eutropha JMP134] Length = 210 Score = 41.8 bits (96), Expect = 0.093, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL +DRIIE+ V Sbjct: 19 LDMEMTGLSPDSDRIIEVAVV 39 >gi|322381856|ref|ZP_08055810.1| ATP-dependent DNA helicase-like protein/DNA polymerase 3 subunit epsilon-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154244|gb|EFX46566.1| ATP-dependent DNA helicase-like protein/DNA polymerase 3 subunit epsilon-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 957 Score = 41.8 bits (96), Expect = 0.094, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 84/219 (38%), Gaps = 7/219 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + M+ V D E T S D II++G V + ++ T+R + + P G + Sbjct: 1 METTGMKFAVLDFE-TTGTSTTDTIIQVGLVIIDEFDITDR-YTSLVNP-GVRIPSSITS 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ PS + ++ + ++ +AH+A FD F+ L + P Sbjct: 58 LTGITDEMVENAPSVEKVMADLYPLLSD--CVLVAHHASFDHAFLQRSLTKAGYPPFTGR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + ++ L +C +GI + H A D+ + ++++I++M + Sbjct: 116 VLDTIDALRVAFPSLGSFQLGHVCSLFGIEH--ENPHQANCDAQVTAELWIRIMQKLFGL 173 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + + R EE Sbjct: 174 PLLTIQRISQILDPNVSDLGWFINEIRAYKELHTAEDEE 212 >gi|311740580|ref|ZP_07714407.1| DNA polymerase III subunit epsilon [Corynebacterium pseudogenitalium ATCC 33035] gi|311304100|gb|EFQ80176.1| DNA polymerase III subunit epsilon [Corynebacterium pseudogenitalium ATCC 33035] Length = 223 Score = 41.8 bits (96), Expect = 0.094, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 15/32 (46%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39 R + FD+ETT + K RI+ V + Sbjct: 7 RMLAFDLETTSANPKEARIVTSALVRIDGRDV 38 >gi|269977107|ref|ZP_06184081.1| oligoribonuclease [Mobiluncus mulieris 28-1] gi|307700139|ref|ZP_07637185.1| oligoribonuclease [Mobiluncus mulieris FB024-16] gi|269934938|gb|EEZ91498.1| oligoribonuclease [Mobiluncus mulieris 28-1] gi|307614688|gb|EFN93911.1| oligoribonuclease [Mobiluncus mulieris FB024-16] Length = 208 Score = 41.8 bits (96), Expect = 0.094, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50 D E TGLD D +IEIG + + + + + + P Sbjct: 15 VDCEMTGLDLATDELIEIGVIVTDFNLNPLDTGIDLLIKP 54 >gi|227875987|ref|ZP_03994110.1| exoribonuclease II [Mobiluncus mulieris ATCC 35243] gi|227843519|gb|EEJ53705.1| exoribonuclease II [Mobiluncus mulieris ATCC 35243] Length = 205 Score = 41.8 bits (96), Expect = 0.094, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50 D E TGLD D +IEIG + + + + + + P Sbjct: 12 VDCEMTGLDLATDELIEIGVIVTDFNLNPLDTGIDLLIKP 51 >gi|260424856|ref|ZP_05779017.1| DNA polymerase III PolC-type [Dialister invisus DSM 15470] gi|260403394|gb|EEW96941.1| DNA polymerase III PolC-type [Dialister invisus DSM 15470] Length = 196 Score = 41.5 bits (95), Expect = 0.094, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 65/171 (38%), Gaps = 9/171 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG+ S I EI A+ ++ + TF + G +L GIT + L Sbjct: 33 VMDIETTGMYSD---ITEIAALCVVSG-EIRDTFHTLVKAKG-PIEKRVERLTGITSDML 87 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINKDPLDPSRIIDTLS 128 +++P + F F ++ + A + + + + + L Sbjct: 88 EEQPPIDDVLPIFMTFIEGFPLVGHGLDSDLIVIDRNLKAVGKPLVTNDYIDTHSLAKLL 147 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + R+ + + +L + Y + + H A+ D ++ +++ Sbjct: 148 LPEREGEHRKYSVKALAEYYELPC--STFHRAMDDCMAEKMLFERLLAEWK 196 >gi|254524227|ref|ZP_05136282.1| exonuclease [Stenotrophomonas sp. SKA14] gi|219721818|gb|EED40343.1| exonuclease [Stenotrophomonas sp. SKA14] Length = 188 Score = 41.5 bits (95), Expect = 0.095, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 60/182 (32%), Gaps = 14/182 (7%) Query: 7 MRKIVF-DIETTGLD--------SKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS 56 M I F D ETTGL ++++ A + K + V + P+G Sbjct: 1 MSLIFFYDTETTGLPAFSEPSDAPHQPHLVQVAASLVNATTRKVISSIDVLVKPDGWTIP 60 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 E ++HGIT+E + S+ +E + I H FD + L+R Sbjct: 61 EEVTRIHGITNEQAEQCGLDESLVTELVLDMWRLSDVRIGHVESFDARILRIALKRYATA 120 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSL----CKRYGITISHRSKHGALLDSHLLSDVYI 172 + T + + + R+ + H A D +++ Sbjct: 121 QVADEWKAGTAQCTAKAAKALMGMTKNPKLIDAHRHFLGREFDGAHTAHADMVACREIHW 180 Query: 173 KM 174 M Sbjct: 181 AM 182 >gi|148272897|ref|YP_001222458.1| DNA polymerase III subunit epsilon [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830827|emb|CAN01769.1| putative DNA polymerase III , epsilon subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 233 Score = 41.5 bits (95), Expect = 0.095, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 17/40 (42%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 FD+ETTG+D + RI+ V L + P Sbjct: 12 FDLETTGVDVETARIVTACIVVLDAQGEVLERHDWLADPG 51 >gi|28899597|ref|NP_799202.1| oligoribonuclease [Vibrio parahaemolyticus RIMD 2210633] gi|153840401|ref|ZP_01993068.1| oligoribonuclease [Vibrio parahaemolyticus AQ3810] gi|260876662|ref|ZP_05889017.1| oligoribonuclease [Vibrio parahaemolyticus AN-5034] gi|260902310|ref|ZP_05910705.1| oligoribonuclease [Vibrio parahaemolyticus AQ4037] gi|31076785|sp|Q87L01|ORN_VIBPA RecName: Full=Oligoribonuclease gi|28807833|dbj|BAC61086.1| oligoribonuclease [Vibrio parahaemolyticus RIMD 2210633] gi|149745937|gb|EDM57067.1| oligoribonuclease [Vibrio parahaemolyticus AQ3810] gi|308093946|gb|EFO43641.1| oligoribonuclease [Vibrio parahaemolyticus AN-5034] gi|308110954|gb|EFO48494.1| oligoribonuclease [Vibrio parahaemolyticus AQ4037] Length = 181 Score = 41.5 bits (95), Expect = 0.095, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +IIEI ++ Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31 >gi|119897809|ref|YP_933022.1| oligoribonuclease [Azoarcus sp. BH72] gi|166215750|sp|A1K5N0|ORN_AZOSB RecName: Full=Oligoribonuclease gi|119670222|emb|CAL94135.1| oligoribonuclease [Azoarcus sp. BH72] Length = 182 Score = 41.5 bits (95), Expect = 0.096, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ DRIIEI V Sbjct: 11 LDMEMTGLEPDRDRIIEIALV 31 >gi|302519905|ref|ZP_07272247.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] gi|302428800|gb|EFL00616.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] Length = 270 Score = 41.5 bits (95), Expect = 0.097, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN 41 M + + R FD+ET+G+D + DRI+ A L Sbjct: 1 MTQWHLGRLCAFDLETSGVDVEADRIVTAAAYGLGGGEPVE 41 >gi|167462331|ref|ZP_02327420.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Paenibacillus larvae subsp. larvae BRL-230010] Length = 816 Score = 41.5 bits (95), Expect = 0.097, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 84/219 (38%), Gaps = 7/219 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + M+ V D E T S D II++G V + ++ T+R + + P G + Sbjct: 1 METTGMKFAVLDFE-TTGTSTTDTIIQVGLVIIDEFDITDR-YTSLVNP-GVRIPSSITS 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ PS + ++ + ++ +AH+A FD F+ L + P Sbjct: 58 LTGITDEMVENAPSVEKVMADLYPLLSD--CVLVAHHASFDHAFLQRSLTKAGYPPFTGR 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + ++ L +C +GI + H A D+ + ++++I++M + Sbjct: 116 VLDTIDALRVAFPSLGSFQLGHVCSLFGIEH--ENPHQANCDAQVTAELWIRIMQKLFGL 173 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + + R EE Sbjct: 174 PLLTIQRISQILDPNVSDLGWFINEIRAYKELHTAEDEE 212 >gi|145295978|ref|YP_001138799.1| hypothetical protein cgR_1902 [Corynebacterium glutamicum R] gi|57158136|dbj|BAD84105.1| probable oligoribonuclease [Corynebacterium glutamicum] gi|140845898|dbj|BAF54897.1| hypothetical protein [Corynebacterium glutamicum R] Length = 219 Score = 41.5 bits (95), Expect = 0.097, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 42/123 (34%), Gaps = 4/123 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYS--KTNRTFQV--FLCPNGRKNSPEALKLHG 64 I D+ETTGLD+ + I+E+G + D R++ + ++P +H Sbjct: 7 FIGLDLETTGLDAHSGVILEVGIIIFDDDLMPIAARSWLTNELVEKESIVSAPVVEVMHE 66 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + K + + + E A+ + + ++ R+ Sbjct: 67 ESGLWEDLKTGHTQPLRQVEAEASAWILEAGANKLPMLGSSVTFDRTWLDHHMPQLHRMF 126 Query: 125 DTL 127 Sbjct: 127 HYR 129 >gi|47223800|emb|CAF98570.1| unnamed protein product [Tetraodon nigroviridis] Length = 248 Score = 41.5 bits (95), Expect = 0.097, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D+E TGLD + D+IIE+ + D + + + + Sbjct: 5 RMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIINQPDELLDGMSEWCKEHH 64 >gi|328885949|emb|CCA59188.1| putative DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC 10712] Length = 240 Score = 41.5 bits (95), Expect = 0.098, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53 FD+ETTG D RI+ V D R P R Sbjct: 11 FDLETTGTDPLEARIVTASIVGFHDGRVV-RQRDWLADPGIR 51 >gi|227495721|ref|ZP_03926032.1| oligoribonuclease [Actinomyces urogenitalis DSM 15434] gi|226834741|gb|EEH67124.1| oligoribonuclease [Actinomyces urogenitalis DSM 15434] Length = 206 Score = 41.5 bits (95), Expect = 0.098, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR 53 D E TGLD D +IE+ V + V + P + Sbjct: 10 IDCEMTGLDLGKDALIEVAVVVTDYELKPLGEGIDVLIKPPAQ 52 >gi|220912933|ref|YP_002488242.1| oligoribonuclease [Arthrobacter chlorophenolicus A6] gi|219859811|gb|ACL40153.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter chlorophenolicus A6] Length = 208 Score = 41.5 bits (95), Expect = 0.098, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG 52 R + D E TGLD KND +IE+ A V + + V + P+ Sbjct: 7 RIVWIDCEMTGLDIKNDALIEVAALVTDSELNILGEGVDVVIKPDD 52 >gi|167626987|ref|YP_001677487.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596988|gb|ABZ86986.1| oligoribonuclease (3'->5' exoribonuclease) [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 178 Score = 41.5 bits (95), Expect = 0.098, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD N RIIEI A+ Sbjct: 10 IDLEMTGLDVDNCRIIEIAAI 30 >gi|328472277|gb|EGF43147.1| oligoribonuclease [Vibrio parahaemolyticus 10329] Length = 181 Score = 41.5 bits (95), Expect = 0.099, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +IIEI ++ Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31 >gi|289424061|ref|ZP_06425847.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] gi|289155486|gb|EFD04165.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] Length = 480 Score = 41.5 bits (95), Expect = 0.099, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52 + FD+E TG +SK + +IEI A +++D+ + + + P Sbjct: 22 YVSFDLEATG-NSKFNYMIEISAFKVIDFEVVDE-YSSLIRPPR 63 >gi|254458573|ref|ZP_05071998.1| exonuclease superfamily protein [Campylobacterales bacterium GD 1] gi|207084881|gb|EDZ62168.1| exonuclease superfamily protein [Campylobacterales bacterium GD 1] Length = 175 Score = 41.5 bits (95), Expect = 0.099, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 49/174 (28%), Gaps = 14/174 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVF------LCPNGRKNSPEAL 60 I+ D ET + +IE+ A + D +F + + P+ + Sbjct: 2 IILDFETN--SANIHDVIEVAAFRVEKVNDEYVVKDSFHRYYLSEYEVNPHALAVHKLSP 59 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + F F + +AHN F++ I + L Sbjct: 60 DRLERLRAKATYEEHFEDDTEFV--EFCKDAKTLVAHNISFELRHIGSLLSFEKHFCTMK 117 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ + L C Y I H A+ D ++ KM Sbjct: 118 ENK-KTVDARNIRGNIKNPKLIETCAYYNIDFDDEQYHSAIYDVTKTLEILNKM 170 >gi|261867655|ref|YP_003255577.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412987|gb|ACX82358.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D11S-1] Length = 182 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +RIIEI Sbjct: 11 IDLEMTGLDPEKERIIEIA 29 >gi|238749568|ref|ZP_04611073.1| Exodeoxyribonuclease 10 [Yersinia rohdei ATCC 43380] gi|238712223|gb|EEQ04436.1| Exodeoxyribonuclease 10 [Yersinia rohdei ATCC 43380] Length = 219 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 61/152 (40%), Gaps = 10/152 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D ET GLD I+EI +V+++D + + P+ R S +A+ +H IT Sbjct: 1 MNLRVIDTETCGLD---GGIVEIASVDVVDGVLS-NPMSDLVSPD-RPISLDAMVIHHIT 55 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E ++ P + ++ + ++AHNA FD G + + + Sbjct: 56 EEMVEGMPRIAVAVRKYQ-----GSPYYVAHNAPFDRGVLPEMGGQWICTLKLARMLYPD 110 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158 + + + + S+ + + + Sbjct: 111 IKHSNQYLRYALRLNVSIPENLYPHRALYDCY 142 >gi|255100457|ref|ZP_05329434.1| putative exonuclease [Clostridium difficile QCD-63q42] Length = 1039 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 30/251 (11%), Positives = 73/251 (29%), Gaps = 27/251 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIE +GLD N I+E+GAV++ D+ T++ + + Sbjct: 12 VFLDIEVSGLDCLNSEILEVGAVKVKDWKI--HTYESLIKNKFEVPIEVFSVCKNLDKND 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ + +F + + K + + L +I Sbjct: 70 LEIANEIELVEDRLVNFVEDSFIICHDLSLKKKFFEYHMPKLKNKFIDLIELAVILEPYH 129 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT-- 187 +N L + + + + + LL ++F + Sbjct: 130 KDYSLEYLKNTLTNCNSKVENRALSDAIDIINIVNCLLVKFNNYEKTTLEPLSFKINSYL 189 Query: 188 --------------------NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 + +++ + + K+ + +I EE +++ Sbjct: 190 KKFNLPTWEWSKFLEEANYDLSNNINIKKEYNIFDSKEEKKKERETLKILNEEEKNYEEL 249 Query: 228 IQTLGKNAIWD 238 ++ IW+ Sbjct: 250 LKY---KTIWE 257 >gi|169634394|ref|YP_001708130.1| oligoribonuclease [Acinetobacter baumannii SDF] gi|169797233|ref|YP_001715026.1| oligoribonuclease [Acinetobacter baumannii AYE] gi|213155973|ref|YP_002318018.1| oligoribonuclease Orn [Acinetobacter baumannii AB0057] gi|215484674|ref|YP_002326909.1| Oligoribonuclease [Acinetobacter baumannii AB307-0294] gi|229577105|ref|YP_001083587.2| oligoribonuclease [Acinetobacter baumannii ATCC 17978] gi|239500755|ref|ZP_04660065.1| oligoribonuclease [Acinetobacter baumannii AB900] gi|293610306|ref|ZP_06692607.1| oligoribonuclease [Acinetobacter sp. SH024] gi|301346492|ref|ZP_07227233.1| oligoribonuclease [Acinetobacter baumannii AB056] gi|301509982|ref|ZP_07235219.1| oligoribonuclease [Acinetobacter baumannii AB058] gi|301594203|ref|ZP_07239211.1| oligoribonuclease [Acinetobacter baumannii AB059] gi|332851262|ref|ZP_08433335.1| oligoribonuclease [Acinetobacter baumannii 6013150] gi|332866131|ref|ZP_08436846.1| oligoribonuclease [Acinetobacter baumannii 6013113] gi|332874063|ref|ZP_08441998.1| oligoribonuclease [Acinetobacter baumannii 6014059] gi|169150160|emb|CAM88054.1| oligoribonuclease [Acinetobacter baumannii AYE] gi|169153186|emb|CAP02276.1| oligoribonuclease [Acinetobacter baumannii] gi|193076335|gb|ABO10985.2| oligoribonuclease [Acinetobacter baumannii ATCC 17978] gi|213055133|gb|ACJ40035.1| oligoribonuclease Orn [Acinetobacter baumannii AB0057] gi|213985933|gb|ACJ56232.1| Oligoribonuclease [Acinetobacter baumannii AB307-0294] gi|292827538|gb|EFF85902.1| oligoribonuclease [Acinetobacter sp. SH024] gi|322506755|gb|ADX02209.1| Oligoribonuclease [Acinetobacter baumannii 1656-2] gi|323516626|gb|ADX91007.1| oligoribonuclease [Acinetobacter baumannii TCDC-AB0715] gi|325124507|gb|ADY84030.1| oligoribonuclease [Acinetobacter calcoaceticus PHEA-2] gi|332730142|gb|EGJ61469.1| oligoribonuclease [Acinetobacter baumannii 6013150] gi|332734772|gb|EGJ65866.1| oligoribonuclease [Acinetobacter baumannii 6013113] gi|332737804|gb|EGJ68696.1| oligoribonuclease [Acinetobacter baumannii 6014059] Length = 188 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 21/37 (56%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37 M R I D+E TGLD+ ND+IIEI + D+ Sbjct: 1 MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDH 37 >gi|113868667|ref|YP_727156.1| oligoribonuclease [Ralstonia eutropha H16] gi|113527443|emb|CAJ93788.1| Oligoribonuclease (3'->5' exoribonuclease) [Ralstonia eutropha H16] Length = 208 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL DRIIEI V Sbjct: 19 LDMEMTGLQPDTDRIIEIAIV 39 >gi|50554073|ref|XP_504445.1| YALI0E26939p [Yarrowia lipolytica] gi|49650314|emb|CAG80046.1| YALI0E26939p [Yarrowia lipolytica] Length = 182 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D E TGLD KND+IIEI + D + ++ + K + + Sbjct: 8 IDCEMTGLDHKNDQIIEICCLLTDDNLQVIDPKGYEAVIHCPKEKLDAMSAWCVEHHGQS 67 Query: 70 LKDKPSFSSIFSE 82 + S + Sbjct: 68 GLTQKCIESTKTM 80 >gi|223986774|ref|ZP_03636758.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM 12042] gi|223961261|gb|EEF65789.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM 12042] Length = 187 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 48/178 (26%), Gaps = 3/178 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ D ET + +G + + D + + + P+ ++ + Sbjct: 1 MKWAAIDFET--ANPSPMSACAVG-LTVFDEGEMVFSDSWLIRPHPYYDAFYPSFIDIHG 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + AHNA FD+ + + + D Sbjct: 58 ITPDQVADAPFFPKVYEQLKPWLDGGVLCAHNAGFDMKVLASCCSLYRLELPDAPYFCTV 117 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + + LN +C GI + H L+ + +M + Sbjct: 118 KLSRKVYPYLKHHRLNDVCDYMGIQLDHHDAGSDARGCALIVANTMNLMQIYEPLELA 175 >gi|301156619|emb|CBW16090.1| oligoribonuclease [Haemophilus parainfluenzae T3T1] Length = 182 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 ++ +K I D+E TGLD + +RIIEI Sbjct: 1 MQLDKQNLIWIDLEMTGLDPEKERIIEIA 29 >gi|309379479|emb|CBX21845.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 187 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + DRIIE+ + Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30 >gi|260769996|ref|ZP_05878929.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] gi|260615334|gb|EEX40520.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] gi|315182520|gb|ADT89433.1| DNA polymerase III, epsilon subunit [Vibrio furnissii NCTC 11218] Length = 238 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 66/172 (38%), Gaps = 12/172 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD ET+G+D+ +D+I+ +G V + LD + ++F+ + + + Sbjct: 55 AFDFETSGVDAGHDQILSLGWVGMTLDQIDVAASEEIFVR-----HPEFVTADSAVINHI 109 Query: 70 LKDKPSFSSIFSEFWDFFNEQ--NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + E D Q + H A + F+ ++ P +DTL Sbjct: 110 TPQVLAHGVTLDEAMDRLFGQLAGKIALVHGACIERAFVAQYMRERFAIEHFPCVWVDTL 169 Query: 128 SIARRKHPSSRNDLNSLCK----RYGITISHRSKHGALLDSHLLSDVYIKMM 175 I ++ + + + + + R + + H A +D+ ++++ M Sbjct: 170 QIEKQMTYAGKTECGTSFQLNDVRTRYALPQYNAHSAAIDALATAELFTAQM 221 >gi|71891864|ref|YP_277593.1| oligoribonuclease [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71795970|gb|AAZ40721.1| oligoribonuclease [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 187 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ + DRI+EI Sbjct: 9 IDLEMTGLNPEWDRILEIA 27 >gi|45185903|ref|NP_983619.1| ACR217Cp [Ashbya gossypii ATCC 10895] gi|44981693|gb|AAS51443.1| ACR217Cp [Ashbya gossypii ATCC 10895] Length = 225 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 8 RKIV-FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGI 65 + IV D E TGLD +D IIE+ + + + ++ + + + Sbjct: 31 KPIVWIDCEMTGLDHTSDHIIEVCCLVTDGHLNPVDDGYESVVHASAAALAAMDAWCTQH 90 Query: 66 T 66 Sbjct: 91 H 91 >gi|319787041|ref|YP_004146516.1| exonuclease RNase T and DNA polymerase III [Pseudoxanthomonas suwonensis 11-1] gi|317465553|gb|ADV27285.1| Exonuclease RNase T and DNA polymerase III [Pseudoxanthomonas suwonensis 11-1] Length = 189 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Query: 1 MIRKNKM-RKIVFDIETTGLDSKNDRIIEIGAV 32 M + M R I D+E TGLD+ D I+EI V Sbjct: 1 MAIASGMDRLIWIDLEMTGLDTDRDSILEIATV 33 >gi|163802739|ref|ZP_02196629.1| oligoribonuclease [Vibrio sp. AND4] gi|159173446|gb|EDP58268.1| oligoribonuclease [Vibrio sp. AND4] Length = 181 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +IIEI ++ Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31 >gi|319951547|ref|ZP_08025351.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4] gi|319434795|gb|EFV90111.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4] Length = 231 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 3/175 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FD+ETTG D + ++ +E+ R P G + A +HGIT Sbjct: 15 RLLAFDLETTGPDPRTAHVVTSALIEIDG--PHKRERNWLADP-GIEIPEGATDVHGITT 71 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ + Q F+ + L+R + +ID Sbjct: 72 AHAREHGRPHAEVIAETVEAIRQGWRDGRTLVVFNACYDLTILRRWHPTFEVAGPVIDPY 131 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + R P + + + H A D+ + + KM+ +++ Sbjct: 132 VVDRAVDPFRKGKRTLEALCGQHGVRLDAAHEAAADALAAARLAWKMLGTQQELS 186 >gi|302857491|ref|XP_002959886.1| hypothetical protein VOLCADRAFT_101402 [Volvox carteri f. nagariensis] gi|300254032|gb|EFJ39050.1| hypothetical protein VOLCADRAFT_101402 [Volvox carteri f. nagariensis] Length = 114 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 18/23 (78%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL 34 D+ETTGL + +RI+E+ AV+L Sbjct: 90 VDVETTGLQWRTERILELAAVDL 112 >gi|109521548|ref|YP_655977.1| gp136 [Mycobacterium phage Wildcat] gi|91981000|gb|ABE67716.1| gp136 [Mycobacterium phage Wildcat] Length = 171 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 18/176 (10%) Query: 7 MR-KIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---SPEAL 60 MR IV D+ETT GL+ I+E+ A T+R P+A+ Sbjct: 1 MRHIIVVDVETTGLGLNPT---ILEVAA----KDLMTDRVLSFIPNVPSSCWAGLDPQAM 53 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQ--NAEWIAHNAKFDVGFINAELQRINKDPL 118 ++ + + + + + + N FD + L Sbjct: 54 AINRYFERGSWRDMLTPNETRDAYAELRDMLDGNTFAGSNPSFDSKLLARNGAVTWHHRL 113 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + +P L+ + K GI +HGAL D L + + + Sbjct: 114 --LDLAAYAAGVLDLNPWELPGLDDVAKALGIP-IPEERHGALADVELTAQCFRTL 166 >gi|296101815|ref|YP_003611961.1| exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056274|gb|ADF61012.1| exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 220 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET L I+E+ +V+++D + P+ R SP+A+ +H IT+ + Sbjct: 4 VIDTETCDL---QGGIVEVASVDVIDGKIV-NPMSHLVRPD-RPISPQAMAIHRITESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEEVIPHYY-----GSPWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKSRKLSVRTPEGLHHHRALYDCYITAALLIDIMNT 153 >gi|262374958|ref|ZP_06068192.1| oligoribonuclease [Acinetobacter lwoffii SH145] gi|262309971|gb|EEY91100.1| oligoribonuclease [Acinetobacter lwoffii SH145] Length = 185 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 20/37 (54%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37 M R I D+E TGLD+ ND+IIEI + D Sbjct: 1 MSSTADTRLIWIDLEMTGLDTDNDQIIEIATIVTDDN 37 >gi|77164204|ref|YP_342729.1| hypothetical protein Noc_0680 [Nitrosococcus oceani ATCC 19707] gi|76882518|gb|ABA57199.1| hypothetical protein Noc_0680 [Nitrosococcus oceani ATCC 19707] Length = 110 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Query: 9 KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGI 65 +V D ETTGL +N I+ +G + + + F+ L R+ EA +HGI Sbjct: 18 YVVLDTETTGLPEENGLPDIVTLGLTAVKNREISESVEFETRLQ---RRILEEAQSIHGI 74 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNE 89 T+ SF S + + D+ + Sbjct: 75 TNIQTARFESFDSRWHQITDYLKD 98 >gi|302681013|ref|XP_003030188.1| hypothetical protein SCHCODRAFT_57864 [Schizophyllum commune H4-8] gi|300103879|gb|EFI95285.1| hypothetical protein SCHCODRAFT_57864 [Schizophyllum commune H4-8] Length = 208 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 10 IV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 IV D E TGLD D+IIEI + + ++ Sbjct: 19 IVWVDCEMTGLDHNKDKIIEIAVLITNGNLEIVDEGVEYI 58 >gi|301063709|ref|ZP_07204220.1| exonuclease [delta proteobacterium NaphS2] gi|300442182|gb|EFK06436.1| exonuclease [delta proteobacterium NaphS2] Length = 177 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 53/176 (30%), Gaps = 9/176 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70 D+E TGLD ++ I+EI ++ T+ V P+ + PE+ Sbjct: 8 IDLEMTGLDPEHHVIVEIASI------VTDDHLSVLAEGPDIVIHQPESTLSAMEPWSLE 61 Query: 71 KDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + I + + + G I +D + + TL Sbjct: 62 HHQASGLLDRIKTSVYSTEQAEEETLSFIRQFCQRGHSPLCGNSICQDRRFLVKHMPTLE 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 + + L KR+ + H K L + + +M QI Sbjct: 122 AFFHYRNIDVSSVKELVKRWYPNLPHFEKQKTHLALSDIKESIGEMQYYRKQIFIS 177 >gi|197302182|ref|ZP_03167241.1| hypothetical protein RUMLAC_00908 [Ruminococcus lactaris ATCC 29176] gi|197298613|gb|EDY33154.1| hypothetical protein RUMLAC_00908 [Ruminococcus lactaris ATCC 29176] Length = 231 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 8/103 (7%) Query: 3 RKNKMRKIVFDIETTGLDSKN--------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 R+ M +V D+E + II+IGAV L + + +++ P Sbjct: 9 RRICMNYLVIDLEMCKVPKDYRNKNYKYASEIIQIGAVLLDERYRRRDEICLYVHPEHGV 68 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97 + GI + +K+ P E ++ ++ + A Sbjct: 69 IDNFIANMTGIKNRQIKNAPKLRERLLELTEWIGDREYQVFAW 111 >gi|194336729|ref|YP_002018523.1| Exonuclease RNase T and DNA polymerase III [Pelodictyon phaeoclathratiforme BU-1] gi|194309206|gb|ACF43906.1| Exonuclease RNase T and DNA polymerase III [Pelodictyon phaeoclathratiforme BU-1] Length = 190 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 56/189 (29%), Gaps = 22/189 (11%) Query: 9 KIVFDIETTGLD-----SKND-----RIIEIGAVELL---DYSKTNRTFQVFLCPNGRKN 55 + FD ETTGL D R++++ + + + + P G Sbjct: 2 YLFFDTETTGLPRNWRAPVTDVDNWPRLVQLAYLSFDAEGNQLFSGDA---IIKPEGFVI 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA------E 109 A+++HGI+ + + + + +AHN FD + + Sbjct: 59 PSSAVQIHGISTQRALLEGKPLGQVLQSFYELVADAEVLVAHNISFDEKIVGSELIRAGM 118 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + T A + ++ S H A D + Sbjct: 119 PNSLPSKRKICTMESTTDFCAIKGPYGNKWPKLSELYFQLFGTVFNEAHNAASDIQATAK 178 Query: 170 VYIKMMVGG 178 + ++ G Sbjct: 179 CFWELKRRG 187 >gi|56270497|gb|AAH87528.1| LOC496097 protein [Xenopus laevis] Length = 223 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 18/32 (56%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 M + R + D+E TGLD + D IIE+ + Sbjct: 38 MAKDMGQRMVWVDLEMTGLDIEKDEIIEMACL 69 >gi|260549063|ref|ZP_05823284.1| oligoribonuclease Orn [Acinetobacter sp. RUH2624] gi|260407791|gb|EEX01263.1| oligoribonuclease Orn [Acinetobacter sp. RUH2624] Length = 188 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 21/37 (56%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37 M R I D+E TGLD+ ND+IIEI + D+ Sbjct: 1 MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDH 37 >gi|284005763|ref|YP_003391582.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM 74] gi|283820947|gb|ADB42783.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM 74] Length = 193 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 18/185 (9%) Query: 7 MRKIVFDIETTGLDSKND----------RIIEIGA-VELLDYSKTNRTFQVFLCPNGRKN 55 M ++ D ET GL R+I + + + + R + + P+G + Sbjct: 1 MTYLIIDTETNGLPQSYHLPVTDLTNWPRLISVAWGLYDEEGKELCRHY-AIVKPDGYRW 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI------NAE 109 + A ++H IT E + K E+ W+ HN D G I + Sbjct: 60 NKVAQQIHRITPEQAETKGQPLDDVLNQLCPAMERADAWVGHNIDLDYGVIGAEFIRAEQ 119 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 Q ++ T+ ++ + P+ + + H A D Sbjct: 120 RQPGRVGEFPARPVLCTMDVSAKVTPNREPVRLDELYQLLTGKKMKGMHDASADMLATVR 179 Query: 170 VYIKM 174 + + Sbjct: 180 CFFGL 184 >gi|168010065|ref|XP_001757725.1| predicted protein [Physcomitrella patens subsp. patens] gi|162691001|gb|EDQ77365.1| predicted protein [Physcomitrella patens subsp. patens] Length = 182 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ 45 M + D+ +GLD + DRI+EI V + RTF+ Sbjct: 1 MPLVWIDLVMSGLDIEKDRILEIACVVTDGRLE--RTFE 37 >gi|119587653|gb|EAW67249.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens] Length = 179 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66 >gi|116670981|ref|YP_831914.1| oligoribonuclease [Arthrobacter sp. FB24] gi|116611090|gb|ABK03814.1| Exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24] Length = 211 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 10/152 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D E TGLD KND +IE+ A V + + V + P+ + + + Sbjct: 7 RIVWIDCEMTGLDIKNDALIEVAALVTDSELNILGDGVDVVIRPDDAALAQMNDFVRDMH 66 Query: 67 ---------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + + I + + + N+ A + Sbjct: 67 TRSGLLDELPHGKTMAEAEAVIMEYIAKWVPDPRKAPLGGNSVGTDRVFLARDMPAVVEH 126 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149 L I + + +R + K G Sbjct: 127 LHYRVIDVSTIKELSRRWFARAYFQAPAKHGG 158 >gi|325983556|ref|YP_004295958.1| exonuclease RNase T and DNA polymerase III [Nitrosomonas sp. AL212] gi|325533075|gb|ADZ27796.1| Exonuclease RNase T and DNA polymerase III [Nitrosomonas sp. AL212] Length = 181 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 M + N I D+E TGL+ NDRIIE+ V Sbjct: 1 MAQDNN-NLIWVDMEMTGLNPDNDRIIEVALV 31 >gi|255547339|ref|XP_002514727.1| exonuclease, putative [Ricinus communis] gi|223546331|gb|EEF47833.1| exonuclease, putative [Ricinus communis] Length = 501 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 12/98 (12%) Query: 11 VFDIETT-----GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCP-NGRKNSPEALKLH 63 FD+ETT G + I+E GA+ + ++ + P N SP +++ + Sbjct: 14 FFDLETTVPNRPG---QGFAILEFGAILVCSRKLEELHSYSTLVRPANLSLISPTSVRCN 70 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 GIT + + P+F+ I ++ N W HN + Sbjct: 71 GITHDAVVLAPTFAEIADIVYEILNG--RIWAGHNIQR 106 >gi|218708317|ref|YP_002415938.1| oligoribonuclease [Vibrio splendidus LGP32] gi|218321336|emb|CAV17286.1| Oligoribonuclease [Vibrio splendidus LGP32] Length = 181 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +IIEI Sbjct: 11 VDLEMTGLDPETHKIIEIA 29 >gi|261400541|ref|ZP_05986666.1| oligoribonuclease [Neisseria lactamica ATCC 23970] gi|269209608|gb|EEZ76063.1| oligoribonuclease [Neisseria lactamica ATCC 23970] Length = 187 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + DRIIE+ + Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30 >gi|255326994|ref|ZP_05368070.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa ATCC 25296] gi|255296211|gb|EET75552.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa ATCC 25296] Length = 228 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 69/206 (33%), Gaps = 6/206 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFL 70 FD+ETTG+D RI+ + L R + P A+ Sbjct: 8 FDLETTGVDVTTARIVTASLILLDPQGNVVRRGEWLADPGVEIPAGAAAVHGITTEYARE 67 Query: 71 KDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIIDT 126 +P+ ++ N IA NA +D ++ E+ R N L P ++D Sbjct: 68 HGRPAREVVWELAGAIGALNLDGVPIIAFNAAYDFSVLHHEMLRHNIANGELPPGVVLDP 127 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-INFGF 185 + + P R +S + H + D+ + +K+ + +N Sbjct: 128 YVLHKHVIPRKRGKRTLEVLATEYGVSLENAHTSADDALAAERLLVKLTEQFPEVLNVDA 187 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP 211 + ++ + + + R +P Sbjct: 188 RQLHEQQIQWAAEQAASFQAWLRTQP 213 >gi|241667560|ref|ZP_04755138.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876105|ref|ZP_05248815.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842126|gb|EET20540.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 178 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD N RIIEI A+ Sbjct: 10 IDLEMTGLDVDNCRIIEIAAI 30 >gi|255549210|ref|XP_002515659.1| oligoribonuclease, mitochondrial, putative [Ricinus communis] gi|223545202|gb|EEF46711.1| oligoribonuclease, mitochondrial, putative [Ricinus communis] Length = 232 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN 41 + M + D+E TGL+ + DR++EI + + D + T Sbjct: 69 EYNMPLVWIDMEMTGLNIEVDRVLEIACI-ITDGNLTK 105 >gi|188581967|ref|YP_001925412.1| exonuclease RNase T and DNA polymerase III [Methylobacterium populi BJ001] gi|179345465|gb|ACB80877.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi BJ001] Length = 187 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 10/68 (14%) Query: 12 FDIETTGL--------DSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 FD+ET+GL D R++++G V D ++ + P+G + +PEA ++ Sbjct: 5 FDVETSGLIIRDRPLDDPAQPRMVQLGFTVHTPDRRVV-HSYSALIRPDGWEITPEAQRV 63 Query: 63 HGITDEFL 70 HG + E Sbjct: 64 HGFSTEDC 71 >gi|158253677|gb|AAI54112.1| LOC100127672 protein [Xenopus (Silurana) tropicalis] Length = 272 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 4/83 (4%) Query: 9 KIVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKN-SPEALKLHG 64 +V D E T + IIE ++L + TF ++ P +P +L G Sbjct: 81 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHTYVQPVVHPQLTPFCTELTG 140 Query: 65 ITDEFLKDKPSFSSIFSEFWDFF 87 I + + +P+ S + ++ Sbjct: 141 IIQDMVDGQPTLSQVLERVDEWM 163 >gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489] gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489] Length = 946 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Query: 4 KNKMRK--IVFDIETTGLDSKNDRIIEIG 30 +N M++ + FD ETTGL+ ++ I Sbjct: 367 QNLMKQTSVCFDTETTGLNPLTAELVGIA 395 >gi|297171091|gb|ADI22103.1| exonuclease I [uncultured Planctomycetales bacterium HF0200_11L05] Length = 468 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 8/116 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT---FQVFLCPNGRKNSPEALKLHGI 65 I D ETTGLD +I+++G++ + + F L SPEA +H Sbjct: 10 YIFTDTETTGLDINFSQILQVGSLLTDENLVVEKEHSLFSKLL--PWIVPSPEAFLVHKK 67 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 T+ +D P+ + + + + I N F + + + + Sbjct: 68 TECLNEDSPTHYEMMCQLRE---DWLNWSINKNPVFITYNGHRFDEELFRRQFYWC 120 >gi|30248106|ref|NP_840176.1| oligoribonuclease [Nitrosomonas europaea ATCC 19718] gi|37999372|sp|Q82Y15|ORN_NITEU RecName: Full=Oligoribonuclease gi|30179991|emb|CAD83986.1| Exonuclease [Nitrosomonas europaea ATCC 19718] Length = 181 Score = 41.5 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ DRIIE+ V Sbjct: 11 IDMEMTGLNPGTDRIIEVALV 31 >gi|255319398|ref|ZP_05360614.1| oligoribonuclease [Acinetobacter radioresistens SK82] gi|262380862|ref|ZP_06074013.1| oligoribonuclease [Acinetobacter radioresistens SH164] gi|255303534|gb|EET82735.1| oligoribonuclease [Acinetobacter radioresistens SK82] gi|262297497|gb|EEY85415.1| oligoribonuclease [Acinetobacter radioresistens SH164] Length = 187 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 21/37 (56%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37 M R I D+E TGLD+ ND+IIEI + D+ Sbjct: 1 MSSTPDTRLIWIDLEMTGLDTDNDQIIEIATIITDDH 37 >gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170] gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170] Length = 944 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%) Query: 1 MIRKNKMRK--IVFDIETTGLDSKNDRIIEIG 30 + +N M++ + FD ETTGL+ ++ I Sbjct: 362 LFMQNLMKQNSVCFDTETTGLNPLTAELVGIA 393 >gi|227877226|ref|ZP_03995299.1| DNA polymerase III alpha chain [Lactobacillus crispatus JV-V01] gi|256842782|ref|ZP_05548270.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN] gi|256848912|ref|ZP_05554346.1| DNA polymerase subunit III alpha [Lactobacillus crispatus MV-1A-US] gi|293380675|ref|ZP_06626725.1| exonuclease [Lactobacillus crispatus 214-1] gi|312977700|ref|ZP_07789447.1| exonuclease [Lactobacillus crispatus CTV-05] gi|227863082|gb|EEJ70528.1| DNA polymerase III alpha chain [Lactobacillus crispatus JV-V01] gi|256614202|gb|EEU19403.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN] gi|256714451|gb|EEU29438.1| DNA polymerase subunit III alpha [Lactobacillus crispatus MV-1A-US] gi|290922772|gb|EFD99724.1| exonuclease [Lactobacillus crispatus 214-1] gi|310895439|gb|EFQ44506.1| exonuclease [Lactobacillus crispatus CTV-05] Length = 177 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 5/160 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET ++ + V + + +R F + P +++H IT Sbjct: 1 MNFIAMDFETANHYPESA--CSLALVMVRNNKIVDR-FYTVINPQ-MPFDARNIQVHQIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +K+ P+ + ++ + + AHNA+FD + L R + I Sbjct: 57 AEDVKNAPTMAEVWPHIKE-LYQPGMLVAAHNARFDTNVMRQSLARYGIEEPHYLVIDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 S + + L+++ + + + H + ++ Sbjct: 116 ASSKLLEPELPDHKLDTVSEALNVELWHHHNALSDSEACA 155 >gi|256851438|ref|ZP_05556827.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 27-2-CHN] gi|260660859|ref|ZP_05861774.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 115-3-CHN] gi|282933112|ref|ZP_06338499.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1] gi|297206253|ref|ZP_06923648.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus jensenii JV-V16] gi|256616500|gb|EEU21688.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 27-2-CHN] gi|260548581|gb|EEX24556.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 115-3-CHN] gi|281302616|gb|EFA94831.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1] gi|297149379|gb|EFH29677.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus jensenii JV-V16] Length = 177 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 5/160 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET ++ + V + + +R F + P +++H IT Sbjct: 1 MNFIAMDFETANRHPESA--CSLALVMVRNNKIIDR-FYTVINPQ-MPFDGRNIQVHQIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +KD P+ + + AHNA+FD + L R + D I Sbjct: 57 PDDVKDAPT-MAEVWPKIKALYQPGMLVAAHNARFDANVLKMSLARYDIDEPHYLVIDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + + + LN++ + + + H + ++ Sbjct: 116 KTSRLFEPDLPNHKLNTVAEALDVELWHHHNALSDSEACA 155 >gi|167035442|ref|YP_001670673.1| exonuclease I [Pseudomonas putida GB-1] gi|166861930|gb|ABZ00338.1| Exodeoxyribonuclease I [Pseudomonas putida GB-1] Length = 477 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 45/160 (28%), Gaps = 7/160 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTG++ + DR +++ V D ++ + ++ P+ H Sbjct: 9 DYETTGINPRCDRPLQVAGVRTDFDLNEIDEPISLYCRPSDDILP------HPAACLVTG 62 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 P + F Q +A G+ D + Sbjct: 63 ITPQLLAEQGLCEAEFMTQVYAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAREW 122 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + S + ++ + Y + + L ++ Sbjct: 123 QGGNSRWDLIDIVRTAYALRPDGIQWPQQDGRTSLRLELL 162 >gi|255576154|ref|XP_002528971.1| exonuclease, putative [Ricinus communis] gi|223531561|gb|EEF33390.1| exonuclease, putative [Ricinus communis] Length = 194 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 3/46 (6%) Query: 10 IVFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNG 52 + FD+ETT + R ++E GA+ + ++ + P Sbjct: 16 VFFDLETTVPNRAGGRFWVLEFGAIIVCPRKLVEIESYTTLIRPKD 61 >gi|126326996|ref|XP_001381185.1| PREDICTED: similar to CGI-114 protein [Monodelphis domestica] Length = 333 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 3/69 (4%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP 57 M M R + D+E TGLD + D+IIE+ + D + + + Sbjct: 129 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIINQPDELLDS 188 Query: 58 EALKLHGIT 66 + Sbjct: 189 MSEWCKEHH 197 >gi|226945053|ref|YP_002800126.1| Exonuclease [Azotobacter vinelandii DJ] gi|226719980|gb|ACO79151.1| Exonuclease [Azotobacter vinelandii DJ] Length = 185 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 49/172 (28%), Gaps = 8/172 (4%) Query: 8 RKIVFDIE-TT--GLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRK----NSPEA 59 + +V D+E TT G D IIEIGA + F+ F+ P R E Sbjct: 3 KWLVIDLEATTDEGGWPVADMEIIEIGASLVNRNGHELDHFKRFVRPLRRPLLTLFCQEL 62 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + + P F + + + A W + + L Sbjct: 63 THIAQSDIDSATPLPMVWEQFEHWLAPYRPRLAGWTSWGDYDRRQLEQEWRRHGLASSLI 122 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P ++ R + +H AL D+ + + Sbjct: 123 PLSHVNLKQRFADTRQLKRPVGLRTALQLAGMSFQGQQHRALEDARNTARLL 174 >gi|156551223|ref|XP_001602293.1| PREDICTED: similar to ENSANGP00000010833 [Nasonia vitripennis] Length = 188 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D+E TGL ++DRI+E+ + + + + F L + + + Sbjct: 9 RIVWIDMEMTGLAVESDRILEVACLITDENLNIVSDEFHQVLHQSDDELARMNEWCQEHH 68 >gi|15677698|ref|NP_274859.1| oligoribonuclease [Neisseria meningitidis MC58] gi|11133786|sp|Q9JXW1|ORN_NEIMB RecName: Full=Oligoribonuclease gi|7227120|gb|AAF42197.1| oligoribonuclease [Neisseria meningitidis MC58] gi|325133508|gb|EGC56171.1| oligoribonuclease [Neisseria meningitidis M13399] gi|325200921|gb|ADY96376.1| oligoribonuclease [Neisseria meningitidis H44/76] gi|325206775|gb|ADZ02228.1| oligoribonuclease [Neisseria meningitidis M04-240196] Length = 187 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + DRIIE+ + Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30 >gi|325577877|ref|ZP_08148110.1| oligoribonuclease [Haemophilus parainfluenzae ATCC 33392] gi|325160307|gb|EGC72434.1| oligoribonuclease [Haemophilus parainfluenzae ATCC 33392] Length = 200 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 20/30 (66%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 +++ +K I D+E TGLD + +RIIEI Sbjct: 18 IMQLDKQNLIWIDLEMTGLDPEKERIIEIA 47 >gi|313206803|ref|YP_004045980.1| DNA polymerase iii, epsilon subunit [Riemerella anatipestifer DSM 15868] gi|312446119|gb|ADQ82474.1| DNA polymerase III, epsilon subunit [Riemerella anatipestifer DSM 15868] gi|315023876|gb|EFT36878.1| DNA polymerase III epsilon subunit [Riemerella anatipestifer RA-YM] gi|325335757|gb|ADZ12031.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases [Riemerella anatipestifer RA-GD] Length = 407 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 7/184 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIE+ G + + IIE+ + ++ F + P S KL GIT + + Sbjct: 4 VIDIESNGGAFREECIIEVAIYRYDGHKIVDQ-FISMVNPE-ADISHFVQKLTGITPKMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K P F I + + + + HN FD + +R+ S Sbjct: 62 KTAPKFHEIAKRIIE--ITEGSTLVGHNVDFDYRMLRQSFKRLGY---HFSIETLDTIPL 116 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 +K + + + I H A D+ D++ +M E+ Sbjct: 117 AKKLIPNEESYSLGKLVKSLGIPLAEHHRASSDARATLDLFKLLMTKDKDNEIIQSHFEE 176 Query: 191 RFFK 194 K Sbjct: 177 ANAK 180 >gi|313205456|ref|YP_004044113.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter propionicigenes WB4] gi|312444772|gb|ADQ81128.1| Exonuclease RNase T and DNA polymerase III [Paludibacter propionicigenes WB4] Length = 189 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 55/187 (29%), Gaps = 16/187 (8%) Query: 9 KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 + FD ETTGL +D R++++ + + P G E Sbjct: 2 YLFFDTETTGLPRDWKAPVSDLNNWPRLVQLAYLFFDSNGNKIAGGDFIIKPEGFTIPTE 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF----INAELQRIN 114 A ++HGIT E + + + +AHN FD + Sbjct: 62 ASRIHGITTERANQEGKPIQTVLRDFQSMINEAQYLVAHNMSFDEKIVGAEFLRNNMPDS 121 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGALLDSHLLSDVYI 172 P + + + + L + + H A D H + + Sbjct: 122 IAPKRKICTMQSTTNFCAINGPYGYKWPKLSELHYKLFKTDFEEAHNAAADIHATARCFW 181 Query: 173 KMMVGGS 179 ++ G Sbjct: 182 ELRRLGK 188 >gi|149192489|ref|ZP_01870676.1| oligoribonuclease [Vibrio shilonii AK1] gi|148833680|gb|EDL50730.1| oligoribonuclease [Vibrio shilonii AK1] Length = 181 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +IIEI ++ Sbjct: 11 VDLEMTGLDPEQHKIIEIASI 31 >gi|254442129|ref|ZP_05055605.1| exonuclease superfamily [Verrucomicrobiae bacterium DG1235] gi|198256437|gb|EDY80745.1| exonuclease superfamily [Verrucomicrobiae bacterium DG1235] Length = 193 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK 39 D+E TGLD DRI+E AV + + Sbjct: 9 IDLEMTGLDPATDRIVE-AAVIITNKQL 35 >gi|306819268|ref|ZP_07452979.1| oligoribonuclease [Mobiluncus mulieris ATCC 35239] gi|304648050|gb|EFM45364.1| oligoribonuclease [Mobiluncus mulieris ATCC 35239] Length = 208 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50 D E TGLD D +IEIG + D + + + + P Sbjct: 15 VDCEMTGLDLATDELIEIGVIVTDFDLNPLDTGIDLLIKP 54 >gi|260361286|ref|ZP_05774394.1| oligoribonuclease [Vibrio parahaemolyticus K5030] gi|308114248|gb|EFO51788.1| oligoribonuclease [Vibrio parahaemolyticus K5030] Length = 148 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +IIEI ++ Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31 >gi|225025590|ref|ZP_03714782.1| hypothetical protein EIKCOROL_02492 [Eikenella corrodens ATCC 23834] gi|224941628|gb|EEG22837.1| hypothetical protein EIKCOROL_02492 [Eikenella corrodens ATCC 23834] Length = 238 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD 36 D+E TGL+ ++DRIIE AV + D Sbjct: 57 LDMEMTGLNPEHDRIIE-AAVVITD 80 >gi|149409288|ref|XP_001508438.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 683 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 43/159 (27%), Gaps = 10/159 (6%) Query: 10 IVFDIETT----GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK----NSPEAL 60 IV D E+T G + IIE AV L + FQ ++ P E Sbjct: 39 IVIDFESTCWNDGKHHYSQEIIEFPAVLLNTSTGEIESEFQCYVQPQEHPILSEFCIELT 98 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + + S F ++ ++ A + D Sbjct: 99 GIKQAQVDEGVPLKICLSQFCKWIQMIQQKKKIIFAPGISNPATSEVKSCAFVTWSDWDL 158 Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158 ++ + + P N L Y + + K Sbjct: 159 GVCLEYECKRKQLRKPEILNSWIDLRATYKLFYMRKPKG 197 >gi|121634222|ref|YP_974467.1| oligoribonuclease [Neisseria meningitidis FAM18] gi|166216273|sp|A1KS35|ORN_NEIMF RecName: Full=Oligoribonuclease gi|120865928|emb|CAM09665.1| putative oligoribonuclease [Neisseria meningitidis FAM18] gi|261393203|emb|CAX50822.1| oligoribonuclease [Neisseria meningitidis 8013] gi|325131506|gb|EGC54213.1| oligoribonuclease [Neisseria meningitidis M6190] gi|325137552|gb|EGC60134.1| oligoribonuclease [Neisseria meningitidis ES14902] gi|325141599|gb|EGC64064.1| oligoribonuclease [Neisseria meningitidis 961-5945] gi|325197638|gb|ADY93094.1| oligoribonuclease [Neisseria meningitidis G2136] Length = 187 Score = 41.5 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + DRIIE+ + Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30 >gi|325127521|gb|EGC50447.1| oligoribonuclease [Neisseria meningitidis N1568] gi|325129519|gb|EGC52346.1| oligoribonuclease [Neisseria meningitidis OX99.30304] gi|325201497|gb|ADY96951.1| oligoribonuclease [Neisseria meningitidis M01-240149] gi|325207477|gb|ADZ02929.1| oligoribonuclease [Neisseria meningitidis NZ-05/33] Length = 187 Score = 41.1 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + DRIIE+ + Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30 >gi|315634034|ref|ZP_07889323.1| oligoribonuclease [Aggregatibacter segnis ATCC 33393] gi|315477284|gb|EFU68027.1| oligoribonuclease [Aggregatibacter segnis ATCC 33393] Length = 182 Score = 41.1 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +RIIEI Sbjct: 11 IDLEMTGLDPEKERIIEIA 29 >gi|330444995|ref|ZP_08308649.1| oligoribonuclease monomer [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493113|dbj|GAA03146.1| oligoribonuclease monomer [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 181 Score = 41.1 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +IIEI Sbjct: 11 IDLEMTGLDPETHKIIEIA 29 >gi|257069110|ref|YP_003155365.1| N-acyl-D-glucosamine 2-epimerase [Brachybacterium faecium DSM 4810] gi|256559928|gb|ACU85775.1| N-acyl-D-glucosamine 2-epimerase [Brachybacterium faecium DSM 4810] Length = 634 Score = 41.1 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51 R I D E TGLD + D ++EI + D + V + P Sbjct: 12 RIIWVDCEMTGLDKQRDALVEIAVLVTDADLNILGDGVDVVIKPP 56 >gi|148227894|ref|NP_001089039.1| ERI1 exoribonuclease 2 [Xenopus laevis] gi|82179168|sp|Q5HZL1|ERI2_XENLA RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease domain-containing protein 1 gi|57032602|gb|AAH88972.1| Exod1 protein [Xenopus laevis] Length = 687 Score = 41.1 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 62/228 (27%), Gaps = 30/228 (13%) Query: 10 IVFDIETT----GLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 I+ D E+T G IIE AV L + + F ++ P S +L Sbjct: 39 IIIDFESTCWKDG-KHSTQEIIEFPAVLLNVSNGEIESEFHTYVQPQEHPILSDFCTELT 97 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + + D S+F + + E AE + + Sbjct: 98 GINQQQVDDGVPLKICLSQFNSWIQKLQKEKGIAFVTAVPTHSTAEHKMCAFVTWSDWDL 157 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK-----MMVGG 178 L R+ + + +D ++ + Sbjct: 158 GVCLLYECRR----------------KQMKKPDILNSWIDLRATYKLFYNRRPKGLNGAL 201 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE-ELDEHD 225 + F E + + T S + D +ITK + H Sbjct: 202 QDLGIEFSGREHSGLDDSRNTAKLASRMICDGC-VMKITKSLDKVNHK 248 >gi|283457705|ref|YP_003362291.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa DY-18] gi|283133706|dbj|BAI64471.1| DNA polymerase III, epsilon subunit [Rothia mucilaginosa DY-18] Length = 231 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 69/206 (33%), Gaps = 6/206 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFL 70 FD+ETTG+D RI+ + L R + P A+ Sbjct: 11 FDLETTGVDVTTARIVTASLILLDPQGNVVRRGEWLADPGVEIPAGAAAVHGITTEYARE 70 Query: 71 KDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIIDT 126 +P+ ++ N IA NA +D ++ E+ R N L P ++D Sbjct: 71 HGRPAREVVWELAGAIGALNLDGVPIIAFNAAYDFSVLHHEMLRHNIANGELPPGVVLDP 130 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-INFGF 185 + + P R +S + H + D+ + +K+ + +N Sbjct: 131 YVLHKHVIPRKRGKRTLEVLAAEYGVSLENAHTSADDALAAERLLVKLTEQFPEVLNVDA 190 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP 211 + ++ + + + R +P Sbjct: 191 RQLHEQQIQWAAEQAASFQAWLRTQP 216 >gi|71736737|ref|YP_274026.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557290|gb|AAZ36501.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323478|gb|EFW79563.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076] gi|320329479|gb|EFW85471.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4] Length = 180 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 5/113 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 +V D+E TT G +IEIGA + + F+ F+ P R + +L Sbjct: 4 WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPVLTHFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + ++++ +F + + A + + D E + Sbjct: 64 HINQSSIDSAAPLTTVWPQFERWLSHHRARVLGWASWGDYDRQQLEEEWRYHR 116 >gi|84386967|ref|ZP_00989991.1| oligoribonuclease [Vibrio splendidus 12B01] gi|84378257|gb|EAP95116.1| oligoribonuclease [Vibrio splendidus 12B01] Length = 181 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +IIEI Sbjct: 11 VDLEMTGLDPETHKIIEIA 29 >gi|237797629|ref|ZP_04586090.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020479|gb|EGI00536.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6] Length = 180 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 5/113 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63 +V D+E TT G +IEIGA + + F+ F+ P R + +L Sbjct: 4 WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPVRRPLLTHFCRQLT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I+ + ++++ +F + + A + + D E + + Sbjct: 64 HISQSNIDSAAPLTTVWPQFERWLSHHRARVLGWASWGDYDRQQLEEEWRHHQ 116 >gi|154488091|ref|ZP_02029208.1| hypothetical protein BIFADO_01662 [Bifidobacterium adolescentis L2-32] gi|154083564|gb|EDN82609.1| hypothetical protein BIFADO_01662 [Bifidobacterium adolescentis L2-32] Length = 212 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51 D ETTG+ N +++EIG + D + + F + P+ Sbjct: 29 IDTETTGISRTNAKLLEIGMIVTNLDGIEEHDRFICPVRPD 69 >gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49] gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49] Length = 949 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%) Query: 1 MIRKNKMRK--IVFDIETTGLDSKNDRIIEIG 30 + +N M++ + FD ETTGL+ ++ I Sbjct: 367 LFIQNLMKQPSVCFDTETTGLNPLTAELVGIA 398 >gi|72161306|ref|YP_288963.1| DNA polymerase III subunit epsilon [Thermobifida fusca YX] gi|71915038|gb|AAZ54940.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX] Length = 210 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 3/146 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D ET + + +G V + D +R + + P + E + Sbjct: 7 AIDFET--ANRNQGSVCAVGLVRVTDGRIVDR-YTTLVRPPAPVDHFEQDNIAVHGITPE 63 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + + + ++AHNA FD+G I A Sbjct: 64 HVADAPAWPQVHTTILEFAAGSPFVAHNAVFDMGVIRAACAHAGLPEPSLHYACSLDIAR 123 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS 156 R + L ++C+ G + Sbjct: 124 RTWPALRNHRLPTVCRTIGYDLRRHH 149 >gi|89075319|ref|ZP_01161741.1| oligoribonuclease [Photobacterium sp. SKA34] gi|90581256|ref|ZP_01237053.1| oligoribonuclease [Vibrio angustum S14] gi|89048868|gb|EAR54437.1| oligoribonuclease [Photobacterium sp. SKA34] gi|90437495|gb|EAS62689.1| oligoribonuclease [Vibrio angustum S14] Length = 181 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +IIEI Sbjct: 11 IDLEMTGLDPETHKIIEIA 29 >gi|330973293|gb|EGH73359.1| exonuclease [Pseudomonas syringae pv. aceris str. M302273PT] Length = 180 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 5/113 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63 +V D+E TT G +IEIGA + + F+ F+ P R + +L Sbjct: 4 WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + ++++ +F + + A + + D E + + Sbjct: 64 HINQSSIDSAAPLTTVWPQFERWLSHHRARIVGWASWGDYDRQQLEEEWRHHH 116 >gi|302185096|ref|ZP_07261769.1| exonuclease [Pseudomonas syringae pv. syringae 642] Length = 180 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 5/113 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63 +V D+E TT G +IEIGA + + F+ F+ P R + +L Sbjct: 4 WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + ++++ +F + + A + + D E + + Sbjct: 64 HINQSSIDSAAPLTTVWPQFERWLSHHRARIVGWASWGDYDRQQLEEEWRHHH 116 >gi|288800983|ref|ZP_06406439.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] gi|288331917|gb|EFC70399.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] Length = 208 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 63/198 (31%), Gaps = 35/198 (17%) Query: 9 KIVFDIETTGLD-----SKND-----RIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSP 57 + FD ETTG+ D R+++I + + + P G + Sbjct: 16 YLFFDTETTGIPNDYNAPSEDTNNWPRLVQIAWLITRENGDIYKELQSRIISPEGFRIPQ 75 Query: 58 EALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 ++ +HGIT E + + ++F + + + + HN FD+ + + Sbjct: 76 SSINIHGITQEKAVEDGEDLCDVLNDFVNDVDYNDVILVGHNIYFDIHVVT-------AE 128 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK----------------HGA 160 + I + ++ + + CK G+ K H A Sbjct: 129 LIRNDMIDEKETLEKINKICTMKKSTDFCKISGLYGYKYPKLQQLYYKLFGENFDNAHDA 188 Query: 161 LLDSHLLSDVYIKMMVGG 178 D + ++ G Sbjct: 189 GSDIEATRKCFFELKRRG 206 >gi|294658997|ref|XP_461325.2| DEHA2F22594p [Debaryomyces hansenii CBS767] gi|202953536|emb|CAG89730.2| DEHA2F22594p [Debaryomyces hansenii] Length = 295 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 15/122 (12%), Positives = 27/122 (22%), Gaps = 5/122 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D E TGL+ D IIEI + + F+ + + Sbjct: 93 IDCEMTGLNVFQDHIIEICCIITDGNLEIIDEKGFESTVYQPKEVLDGMNEWCVNQHGKS 152 Query: 70 LKDKPSFSSIFS---EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D E +++ N G + Sbjct: 153 GLTAKILENPQCELSKIEDELLEYIKQYVQPNKGIMAGNSIHMDKFFMMREFPKIIDYLH 212 Query: 127 LS 128 Sbjct: 213 YR 214 >gi|32455548|ref|NP_862304.1| Ycg4D [Corynebacterium glutamicum] gi|9836715|gb|AAG00279.1|AF164956_11 Ycg4D [Corynebacterium glutamicum] Length = 296 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 52/187 (27%), Gaps = 9/187 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ETTGL ++IEI + F + P A ++HGI+ + L Sbjct: 116 VLDTETTGLGYD-AQVIEIAIADASGKVL----FDTRIKPTVAIE-AAAQEVHGISPDAL 169 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK---FDVGFINAELQRINKDPLDPSRIIDTL 127 + PS+ + + + + + L+ + Sbjct: 170 INAPSWPEVANRIEALLSGRTVIIFNASFDSRLIAQTAGAFGLETGWWSTCTTRCAMHLA 229 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + A + + + H A D+ ++ + ++ Sbjct: 230 ASAYGSTNPYGSISLADATSAAGVPWTGAAHSAAADTLATVELVKSIARVKPALDLELSK 289 Query: 188 NEDRFFK 194 + Sbjct: 290 LLEEKAG 296 >gi|251792379|ref|YP_003007105.1| oligoribonuclease [Aggregatibacter aphrophilus NJ8700] gi|247533772|gb|ACS97018.1| oligoribonuclease [Aggregatibacter aphrophilus NJ8700] Length = 181 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +RIIEI Sbjct: 11 IDLEMTGLDPEKERIIEIA 29 >gi|330837024|ref|YP_004411665.1| Exodeoxyribonuclease I [Spirochaeta coccoides DSM 17374] gi|329748927|gb|AEC02283.1| Exodeoxyribonuclease I [Spirochaeta coccoides DSM 17374] Length = 474 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%) Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALK 61 D+ET GL+ DRI++ V D + + ++ P Sbjct: 11 DLETFGLNPYYDRIVQFAGVRTDMDLTPVGQPILLYARPTIDYLPDPLAC 60 >gi|325204819|gb|ADZ00273.1| oligoribonuclease [Neisseria meningitidis M01-240355] Length = 187 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + DRIIE+ + Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30 >gi|295692577|ref|YP_003601187.1| DNA polymerase iii, epsilon subunit related 3'-5' exonuclease [Lactobacillus crispatus ST1] gi|295030683|emb|CBL50162.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus crispatus ST1] Length = 177 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 5/160 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET ++ + V + + +R F + P +++H IT Sbjct: 1 MNFIAMDFETANHYPESA--CSLALVMVRNNKIVDR-FYTVINPQ-MPFDARNIQIHQIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +K+ P+ + ++ + + AHNA+FD + L R + I Sbjct: 57 AEDVKNAPTMAEVWPHIKE-LYQPGMLVAAHNARFDTNVMRQSLARYGIEEPHYLVIDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 S + + L+++ + + + H + ++ Sbjct: 116 ASSKLLEPELPDHKLDTVSEALNVELWHHHNALSDSEACA 155 >gi|311279254|ref|YP_003941485.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae SCF1] gi|308748449|gb|ADO48201.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae SCF1] Length = 219 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 17/162 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET L ++EI +V+++D T + P+ R SP+A+ +H IT+E + Sbjct: 4 VIDTETCDL---QGGVVEIASVDIVDGKIT-NPMSHLIRPD-RPISPQAMAIHRITEEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + +A ++AHNA FD + + Sbjct: 59 ADKPWIEEVV-----PLYQGSAWYVAHNASFDRRVLPEMNGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S L K T H AL D ++ + + I Sbjct: 107 WPGIKYSNMALYKSRKLSVATPPGLHHHRALYDCYITAALLI 148 >gi|32491178|ref|NP_871432.1| oligoribonuclease [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|81844446|sp|Q8D2C5|ORN_WIGBR RecName: Full=Oligoribonuclease gi|25166385|dbj|BAC24575.1| yjeR [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 186 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIG------AVELLDYSKTNRTFQV 46 NK I D+E TGL+ +NDRIIEI V++L + FQ Sbjct: 8 NKKNLIWIDLEMTGLNLENDRIIEIATVITDKYVKILAEGPSIAIFQS 55 >gi|295425904|ref|ZP_06818582.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus amylolyticus DSM 11664] gi|295064402|gb|EFG55332.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus amylolyticus DSM 11664] Length = 177 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 7/167 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET ++ + V + + +R F + P +++H IT Sbjct: 1 MNFIAMDFETANHYPESA--CSLALVMVRNNEIVDR-FYTVINPQ-MPFDARNIEVHQIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++D P+ + + AHNA+FD + L R + I Sbjct: 57 ADDVRDAPT-MAEVWPKIKDLYQPGMLVAAHNARFDTNVMRQSLARYSISEPHYLVIDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + + L+++ + + + H H AL DS +++ I Sbjct: 116 ATSKLLEPDLPDHKLDTVSEALNVNLWH--HHNALSDSEACAEILIN 160 >gi|197334850|ref|YP_002157125.1| oligoribonuclease [Vibrio fischeri MJ11] gi|197316340|gb|ACH65787.1| oligoribonuclease [Vibrio fischeri MJ11] Length = 181 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +IIEI ++ Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31 >gi|301787585|ref|XP_002929208.1| PREDICTED: 3'-5' exoribonuclease 1-like [Ailuropoda melanoleuca] Length = 349 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G + IIE V L ++ + TFQ ++ P S + L G Sbjct: 132 IIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINLTG 191 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + + D+ + + + + Sbjct: 192 ITQDQVDRADTFPQVLKQVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCRLSRLKYP 251 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G+ R H L DS ++ + ++M+ Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAVRML 310 Query: 176 VGGSQINFG 184 G ++ Sbjct: 311 QDGCELRIN 319 >gi|223042138|ref|ZP_03612309.1| oligoribonuclease [Actinobacillus minor 202] gi|240947963|ref|ZP_04752389.1| oligoribonuclease [Actinobacillus minor NM305] gi|223017077|gb|EEF15518.1| oligoribonuclease [Actinobacillus minor 202] gi|240297719|gb|EER48180.1| oligoribonuclease [Actinobacillus minor NM305] Length = 181 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + ++K I D+E TGLD + +RIIEI Sbjct: 1 MSQDKQNLIWIDLEMTGLDPEKERIIEIA 29 >gi|59712936|ref|YP_205712.1| oligoribonuclease [Vibrio fischeri ES114] gi|81310874|sp|Q5E2C2|ORN_VIBF1 RecName: Full=Oligoribonuclease gi|59481037|gb|AAW86824.1| oligoribonuclease [Vibrio fischeri ES114] Length = 181 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +IIEI ++ Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31 >gi|300798138|ref|NP_001178043.1| ERI1 exoribonuclease 2 [Rattus norvegicus] Length = 687 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 51/177 (28%), Gaps = 6/177 (3%) Query: 10 IVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 IV D E+T G + IIE AV L + F ++ P S +L Sbjct: 38 IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTELT 97 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + + S+F + ++ + A D E++ + Sbjct: 98 GIKQVQVDEGVPLKICLSQFCKWIHKLQQQKKISFATGDSEPSTPEVKPCAFVTWSDWDL 157 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L ++ + + T S L +V I+ Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYNRKPKGLSGALQEVGIEFSGREHS 214 >gi|209696189|ref|YP_002264119.1| oligoribonuclease [Aliivibrio salmonicida LFI1238] gi|208010142|emb|CAQ80467.1| oligoribonuclease [Aliivibrio salmonicida LFI1238] Length = 181 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +IIEI ++ Sbjct: 11 VDLEMTGLDPETHKIIEIASI 31 >gi|149914802|ref|ZP_01903332.1| Exodeoxyribonuclease I [Roseobacter sp. AzwK-3b] gi|149811595|gb|EDM71430.1| Exodeoxyribonuclease I [Roseobacter sp. AzwK-3b] Length = 459 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 53/224 (23%), Gaps = 14/224 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + +D+ETTG+ + D+ ++ A+ + + + Sbjct: 1 MDFVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDRVNIRCRLAPHILPSPQALVVTRV 60 Query: 67 DEFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 P+ S+F + + F L++ L P+ Sbjct: 61 SPDQLTDPNLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQNLSPNIYAT 120 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + R R + + K+ Sbjct: 121 QFNGNTRFDILPAVY----------AAYARQPDLFVWPTDDTGRRSFKLDRLAPANGINA 170 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 D E + R L++ + + H +Q Sbjct: 171 HNAHDALGDVEATIHIARLIATRSPALWSELID---NAHKARVQ 211 >gi|289626405|ref|ZP_06459359.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649559|ref|ZP_06480902.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250] gi|298486356|ref|ZP_07004418.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159084|gb|EFI00143.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866329|gb|EGH01038.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889890|gb|EGH22551.1| exonuclease [Pseudomonas syringae pv. mori str. 301020] Length = 180 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 5/113 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 +V D+E TT G +IEIGA + + F+ F+ P R + +L Sbjct: 4 WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPVLTHFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + ++++ +F + + A + + D E + Sbjct: 64 HINQSSIDSAAPLTAVWPQFERWLSHHRARVLGWASWGDYDRQQLEEEWRYHR 116 >gi|226952875|ref|ZP_03823339.1| oligoribonuclease [Acinetobacter sp. ATCC 27244] gi|226836386|gb|EEH68769.1| oligoribonuclease [Acinetobacter sp. ATCC 27244] Length = 186 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 20/37 (54%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37 M R I D+E TGLD+ ND+IIEI + D Sbjct: 1 MSSTPDTRLIWIDLEMTGLDTDNDKIIEIATIITDDN 37 >gi|312882822|ref|ZP_07742555.1| oligoribonuclease [Vibrio caribbenthicus ATCC BAA-2122] gi|309369514|gb|EFP97033.1| oligoribonuclease [Vibrio caribbenthicus ATCC BAA-2122] Length = 181 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +IIEI Sbjct: 11 IDLEMTGLDPEEHKIIEIA 29 >gi|262374198|ref|ZP_06067474.1| oligoribonuclease [Acinetobacter junii SH205] gi|262310756|gb|EEY91844.1| oligoribonuclease [Acinetobacter junii SH205] Length = 184 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 20/37 (54%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37 M R I D+E TGLD+ ND+IIEI + D Sbjct: 1 MSSTPDTRLIWIDLEMTGLDTDNDKIIEIATIITDDN 37 >gi|170590708|ref|XP_001900113.1| exonuclease family protein [Brugia malayi] gi|158592263|gb|EDP30863.1| exonuclease family protein [Brugia malayi] Length = 399 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 56/218 (25%), Gaps = 19/218 (8%) Query: 11 VFDIETTG---LDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHGI 65 V D E T L N IIE AV + + F ++ P S GI Sbjct: 148 VIDFECTCEADLYDYNHEIIEFPAVLVDVRKKEIVDVFHSYVRPLANPQLSEFCSAFTGI 207 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E + F + W+ + A + D ++ Sbjct: 208 TQEMIDKALPFID--------VLDSFRTWMQLHRLGQNDMRYAFVTDGPWDIAKFFQMQC 259 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 S R +N S L L ++ M G + + Sbjct: 260 IQSKLNTVPHDFRFYINIRRSFANKYCKKYSMQKINLGGMLT---FLNMKFEGREHS--- 313 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 ++ + + R RI + E + Sbjct: 314 GLDDSKNIARIVIKMLEDRSELRVNEKLVRIKESEKAK 351 >gi|319639353|ref|ZP_07994104.1| oligoribonuclease [Neisseria mucosa C102] gi|317399537|gb|EFV80207.1| oligoribonuclease [Neisseria mucosa C102] Length = 185 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 16/21 (76%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ ++DRIIE+ + Sbjct: 11 LDMEMTGLNPEHDRIIEVAMI 31 >gi|291390710|ref|XP_002711856.1| PREDICTED: exoribonuclease 2 [Oryctolagus cuniculus] Length = 689 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 41/159 (25%), Gaps = 10/159 (6%) Query: 10 IVFDIETT----GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK----NSPEAL 60 IV D E+T G N IIE AV L + F ++ P E Sbjct: 38 IVIDFESTCWNDGKHHHNQEIIEFPAVLLNTSTGEIESEFHTYVQPQEHPILSEFCMELT 97 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + + S F ++ +Q + + D Sbjct: 98 GIKQAQVDEGVPLKICLSQFCKWIHKIQQQKKIVFSTGVSEPSSSEVQPCTFVTWSDWDL 157 Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158 ++ + P N L Y + + K Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKG 196 >gi|28869227|ref|NP_791846.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000] gi|213967497|ref|ZP_03395645.1| exonuclease [Pseudomonas syringae pv. tomato T1] gi|301386461|ref|ZP_07234879.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13] gi|302059344|ref|ZP_07250885.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40] gi|302131217|ref|ZP_07257207.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852468|gb|AAO55541.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000] gi|213927798|gb|EEB61345.1| exonuclease [Pseudomonas syringae pv. tomato T1] gi|331016942|gb|EGH96998.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 180 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 5/113 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63 +V D+E TT G +IEIGA + + F+ F+ P R + +L Sbjct: 4 WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCKELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I+ + ++++ +F + + A + + D E + Sbjct: 64 HISQSNIDSAAPLTTVWPQFERWLSHHRARVVGWASWGDYDRQQLEEEWRRHQ 116 >gi|152978666|ref|YP_001344295.1| oligoribonuclease [Actinobacillus succinogenes 130Z] gi|171704275|sp|A6VN13|ORN_ACTSZ RecName: Full=Oligoribonuclease gi|150840389|gb|ABR74360.1| Exonuclease RNase T and DNA polymerase III [Actinobacillus succinogenes 130Z] Length = 182 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +RIIEI Sbjct: 11 IDLEMTGLDPEQERIIEIA 29 >gi|328774277|gb|EGF84314.1| hypothetical protein BATDEDRAFT_9096 [Batrachochytrium dendrobatidis JAM81] Length = 188 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 36/146 (24%), Gaps = 11/146 (7%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+E TGLD + D IIEI + + + + + L E Sbjct: 13 IDLEMTGLDLERDVIIEIACIITDGNLNAVQERYDLVLHQPKSVMDQMNDWCIQTHGESG 72 Query: 71 KDKPSFSSI----------FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K S +Q +A N+ + + D L Sbjct: 73 LTKQVIESTLTLKDAEATILDFVKRHIPKQREGVLAGNSVHVDRQFLHKHMPLLIDHLHY 132 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCK 146 + + + K Sbjct: 133 RIVDVSSIKEIGMRWYPDFYKKAPKK 158 >gi|322514990|ref|ZP_08068002.1| oligoribonuclease [Actinobacillus ureae ATCC 25976] gi|322119043|gb|EFX91207.1| oligoribonuclease [Actinobacillus ureae ATCC 25976] Length = 183 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 18/30 (60%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M + + I D+E TGLD + +RIIEI Sbjct: 1 MSKLDSQNLIWIDLEMTGLDPEKERIIEIA 30 >gi|291409160|ref|XP_002720873.1| PREDICTED: histone mRNA 3 end-specific exonuclease-like [Oryctolagus cuniculus] Length = 344 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G + IIE V L ++ + TFQ ++ P S + L G Sbjct: 127 IIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEANTQLSDFCINLTG 186 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + + D+ + + + + Sbjct: 187 ITQDQVDKADTFPQVLRKVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCQLSRLKYP 246 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G+ R H L DS ++ + ++M+ Sbjct: 247 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAVRML 305 Query: 176 VGGSQINFG 184 G ++ Sbjct: 306 QDGCELRIN 314 >gi|257484494|ref|ZP_05638535.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330986187|gb|EGH84290.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315] gi|331013242|gb|EGH93298.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 180 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 5/113 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 +V D+E TT G +IEIGA + + F+ F+ P R + +L Sbjct: 4 WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPVLTHFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + ++++ +F + + A + + D E + Sbjct: 64 HINQSSIDSAAPLTTVWPQFERWLSHHRARVLGWASWGDYDRQQLEEEWRYHR 116 >gi|126699035|ref|YP_001087932.1| putative exonuclease [Clostridium difficile 630] gi|115250472|emb|CAJ68296.1| putative helicase, DinG family [Clostridium difficile] Length = 1039 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 30/251 (11%), Positives = 73/251 (29%), Gaps = 27/251 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIE +GLD N I+E+GAV++ D+ T++ + + Sbjct: 12 VFLDIEVSGLDCLNSEILEVGAVKVKDWKIY--TYESLIKNKFEVPVEVFSVCKNLDKND 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ + +F + + K + + L +I Sbjct: 70 LEIANEIELVEDRLVNFVEDSFIICHDLSLKKKFFEYHMPKLKNKFIDLIELAVILEPYH 129 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT-- 187 +N L + + + + + LL ++F + Sbjct: 130 KDYSLEYLKNTLTNCNSKVENRALSDAIDIINIVNCLLVKFNNYEKTTLEPLSFKINSYL 189 Query: 188 --------------------NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 + +++ + + K+ + +I EE +++ Sbjct: 190 KKFNLPTWEWSKFLEEANYDLSNNINIKKEYNIFDSKEEKKKERETLKILNEEEKNYEEL 249 Query: 228 IQTLGKNAIWD 238 ++ IW+ Sbjct: 250 LKY---KTIWE 257 >gi|256637237|dbj|BAI03206.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-03] gi|256640289|dbj|BAI06251.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-07] gi|256643346|dbj|BAI09301.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-22] gi|256646401|dbj|BAI12349.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-26] gi|256649454|dbj|BAI15395.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-32] gi|256655498|dbj|BAI21425.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-12] Length = 337 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 18/179 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRKNSPEALKLHG 64 D+ETTGL S D+I+ I + L T ++ ++ +K+ P A +HG Sbjct: 129 FVDVETTGLHSD-DQIVSICMILLYADKSQELQKLTYKSLY-YIFDPCKKSHPIAEGIHG 186 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 D L+ + F F E++ +AHN FD+ FI + I Sbjct: 187 YNDWTLRHQNLFEEKMEHILSFI-EESDVIVAHNVNFDMKFIRNSFA---------NAKI 236 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D I S C + S H A D + +Y++ M + ++ Sbjct: 237 DIGKIGTMCTMEMHGGSLSACSKRLGIQRKTSIHDAAEDVLMCMCLYLEKMSNINVLDM 295 >gi|258543099|ref|YP_003188532.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO 3283-01] gi|256634177|dbj|BAI00153.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-01] gi|256652440|dbj|BAI18374.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-01-42C] Length = 343 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 18/179 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRKNSPEALKLHG 64 D+ETTGL S D+I+ I + L T ++ ++ +K+ P A +HG Sbjct: 135 FVDVETTGLHSD-DQIVSICMILLYADKSQELQKLTYKSLY-YIFDPCKKSHPIAEGIHG 192 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 D L+ + F F E++ +AHN FD+ FI + I Sbjct: 193 YNDWTLRHQNLFEEKMEHILSFI-EESDVIVAHNVNFDMKFIRNSFA---------NAKI 242 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D I S C + S H A D + +Y++ M + ++ Sbjct: 243 DIGKIGTMCTMEMHGGSLSACSKRLGIQRKTSIHDAAEDVLMCMCLYLEKMSNINVLDM 301 >gi|119187187|ref|XP_001244200.1| hypothetical protein CIMG_03641 [Coccidioides immitis RS] Length = 137 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 2/57 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD + D I++I F V + S + Sbjct: 13 IDCEMTGLDPETDHILQISCFLTDADLNLLEPEGFHVTVHQPQYILSSMSSWCVSTH 69 >gi|26325030|dbj|BAC26269.1| unnamed protein product [Mus musculus] Length = 688 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 53/177 (29%), Gaps = 6/177 (3%) Query: 10 IVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 IV D E+T G + IIE AV L + F ++ P S +L Sbjct: 38 IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTELT 97 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + + S+F + ++ + A D +E++ + Sbjct: 98 GIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTWSDWDL 157 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L R+ + + T K S L +V I+ Sbjct: 158 GVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQEVGIEFSGREHS 214 >gi|74141341|dbj|BAE35962.1| unnamed protein product [Mus musculus] Length = 636 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 53/177 (29%), Gaps = 6/177 (3%) Query: 10 IVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 IV D E+T G + IIE AV L + F ++ P S +L Sbjct: 38 IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTELT 97 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + + S+F + ++ + A D +E++ + Sbjct: 98 GIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTWSDWDL 157 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L R+ + + T K S L +V I+ Sbjct: 158 GVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQEVGIEFSGREHS 214 >gi|61098180|ref|NP_081974.3| ERI1 exoribonuclease 2 [Mus musculus] gi|81888440|sp|Q5BKS4|ERI2_MOUSE RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease domain-containing protein 1 gi|60688299|gb|AAH90961.1| Exonuclease domain containing 1 [Mus musculus] gi|74138480|dbj|BAE38055.1| unnamed protein product [Mus musculus] gi|74189274|dbj|BAE22676.1| unnamed protein product [Mus musculus] Length = 688 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 53/177 (29%), Gaps = 6/177 (3%) Query: 10 IVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 IV D E+T G + IIE AV L + F ++ P S +L Sbjct: 38 IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTELT 97 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + + S+F + ++ + A D +E++ + Sbjct: 98 GIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTWSDWDL 157 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L R+ + + T K S L +V I+ Sbjct: 158 GVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQEVGIEFSGREHS 214 >gi|238897699|ref|YP_002923378.1| oligoribonuclease [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465456|gb|ACQ67230.1| oligoribonuclease [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 185 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + D IIEI Sbjct: 15 IDLEMTGLDPERDSIIEIA 33 >gi|145641023|ref|ZP_01796604.1| oligoribonuclease [Haemophilus influenzae R3021] gi|145274184|gb|EDK14049.1| oligoribonuclease [Haemophilus influenzae 22.4-21] Length = 115 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +RIIEI Sbjct: 11 IDLEMTGLDPEKERIIEIA 29 >gi|260913837|ref|ZP_05920311.1| oligoribonuclease [Pasteurella dagmatis ATCC 43325] gi|260631924|gb|EEX50101.1| oligoribonuclease [Pasteurella dagmatis ATCC 43325] Length = 184 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +RIIEI Sbjct: 11 IDLEMTGLDPEKERIIEIA 29 >gi|237809227|ref|YP_002893667.1| Exonuclease RNase T and DNA polymerase III [Tolumonas auensis DSM 9187] gi|237501488|gb|ACQ94081.1| Exonuclease RNase T and DNA polymerase III [Tolumonas auensis DSM 9187] Length = 181 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 20/31 (64%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 + +N+ I D+E TGL+ + DRI+EI + Sbjct: 1 MSQNEQNLIWLDMEMTGLEPETDRILEIAMI 31 >gi|172040411|ref|YP_001800125.1| DNA polymerase III subunit epsilon [Corynebacterium urealyticum DSM 7109] gi|171851715|emb|CAQ04691.1| DNA polymerase III, epsilon subunit [Corynebacterium urealyticum DSM 7109] Length = 237 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 15/30 (50%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN 41 FD+ETTG + + RI+ V + + Sbjct: 28 FDLETTGTNPLSARIVTSAMVRIRGSQVED 57 >gi|304388401|ref|ZP_07370510.1| oligoribonuclease [Neisseria meningitidis ATCC 13091] gi|304337613|gb|EFM03773.1| oligoribonuclease [Neisseria meningitidis ATCC 13091] Length = 187 Score = 41.1 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + DRIIE+ + Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30 >gi|90018234|gb|ABD83930.1| hypothetical protein [Ictalurus punctatus] Length = 216 Score = 41.1 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 6/115 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGL++ I+++ A+ R+F V++ P + + Sbjct: 35 VFXDLETTGLNTSECDIVQLSAI------SGERSFNVYILPRCPIDHGASRVTGLTIHSR 88 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + + VG R + + Sbjct: 89 KLLLHGQPMQTVPLREALTSFISFLKTFSRPVLVGHNCKRFDRPILLRIMTEFNL 143 >gi|294649278|ref|ZP_06726713.1| exoribonuclease II [Acinetobacter haemolyticus ATCC 19194] gi|292824831|gb|EFF83599.1| exoribonuclease II [Acinetobacter haemolyticus ATCC 19194] Length = 186 Score = 41.1 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 20/37 (54%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37 M R I D+E TGLD+ ND+IIEI + D Sbjct: 1 MSSTPDTRLIWIDLEMTGLDTDNDKIIEIATIITDDN 37 >gi|269467908|gb|EEZ79647.1| DNA polymerase III, epsilon subunit [uncultured SUP05 cluster bacterium] Length = 196 Score = 41.1 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 59/185 (31%), Gaps = 14/185 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIET G + K D ++EI A+ + +D + + P G P ALK +G Sbjct: 13 VVVDIETGGFNDKTDAMLEICAIIIGIDDKGVYYPKDSRHFHIEPFKGANLDPSALKFNG 72 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I A + HNA FD+GF+ A R Sbjct: 73 IDVNNPFRMAVSEKEALGEIFKTARAEMKEEECTRAILVGHNAFFDLGFLYAASNRSKLK 132 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + ++ + I H AL D+ ++++ K+ Sbjct: 133 NPFHQFSTIDTVSLSALYYGETVLAKAM-RVANIEWDDAKAHSALYDTKKTAELFCKIFN 191 Query: 177 GGSQI 181 Sbjct: 192 AQDYT 196 >gi|332519119|ref|ZP_08395586.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4] gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4] Length = 953 Score = 41.1 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Query: 1 MIRKNKMRK--IVFDIETTGLDSKNDRIIEIG 30 + KN M + + FD ETTGL+ ++ I Sbjct: 371 LFIKNLMNQTSVCFDTETTGLNPLTAELVGIA 402 >gi|289679622|ref|ZP_06500512.1| exonuclease [Pseudomonas syringae pv. syringae FF5] gi|330897689|gb|EGH29108.1| exonuclease [Pseudomonas syringae pv. japonica str. M301072PT] gi|330981951|gb|EGH80054.1| exonuclease [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 180 Score = 41.1 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 5/113 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63 +V D+E TT G +IEIGA + + F+ F+ P R + +L Sbjct: 4 WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + ++++ +F + + A + + D E + + Sbjct: 64 HINQSSIDSAAPLTTVWPQFERWLSHHRARIVGWASWGDYDRQQLEEEWRHHH 116 >gi|303317210|ref|XP_003068607.1| exonuclease family protein [Coccidioides posadasii C735 delta SOWgp] gi|240108288|gb|EER26462.1| exonuclease family protein [Coccidioides posadasii C735 delta SOWgp] gi|320038531|gb|EFW20466.1| RNA exonuclease Rex2 [Coccidioides posadasii str. Silveira] Length = 190 Score = 41.1 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 2/59 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D E TGLD + D I++I F V + S + Sbjct: 13 IDCEMTGLDPETDHILQISCFLTDADLNLLEPEGFHVTVHQPQYILSSMSSWCVSTHGH 71 >gi|213618879|ref|ZP_03372705.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 178 Score = 41.1 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL + I+EI ++ + + P + EA+ +HGIT+E Sbjct: 20 YLFIDTETTGLG-DDAEIVEICIIDSHGFIM----LNTLIKP-TKPIPDEAIAIHGITNE 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIA 96 + P+++ I + F Sbjct: 74 MVAFAPAWTDICGAVEELFRRFGFVIYN 101 >gi|66045076|ref|YP_234917.1| exonuclease [Pseudomonas syringae pv. syringae B728a] gi|63255783|gb|AAY36879.1| Exonuclease [Pseudomonas syringae pv. syringae B728a] Length = 181 Score = 41.1 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 5/113 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63 +V D+E TT G +IEIGA + + F+ F+ P R + +L Sbjct: 5 WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCRELT 64 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + ++++ +F + + A + + D E + + Sbjct: 65 HINQSSIDSAAPLTTVWPQFERWLSHHRARIVGWASWGDYDRQQLEEEWRHHH 117 >gi|218767556|ref|YP_002342068.1| oligoribonuclease [Neisseria meningitidis Z2491] gi|11133783|sp|Q9JW09|ORN_NEIMA RecName: Full=Oligoribonuclease gi|121051564|emb|CAM07862.1| putative oligoribonuclease [Neisseria meningitidis Z2491] gi|319409820|emb|CBY90128.1| oligoribonuclease [Neisseria meningitidis WUE 2594] Length = 187 Score = 41.1 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + DRIIE+ + Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30 >gi|326331153|ref|ZP_08197449.1| oligoribonuclease [Nocardioidaceae bacterium Broad-1] gi|325951048|gb|EGD43092.1| oligoribonuclease [Nocardioidaceae bacterium Broad-1] Length = 222 Score = 41.1 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPN 51 R + D E TGL +ND +IE+ A V D + + + P Sbjct: 11 RLVWIDCEMTGLSLENDALIEVAALVTDFDLNVLGDGVDIIIKPP 55 >gi|313669085|ref|YP_004049369.1| oligoribonuclease [Neisseria lactamica ST-640] gi|313006547|emb|CBN88011.1| putative oligoribonuclease [Neisseria lactamica 020-06] Length = 187 Score = 41.1 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + DRIIE+ + Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30 >gi|237640346|ref|YP_002891201.1| exonuclease family protein [Escherichia coli] gi|229561565|gb|ACQ77768.1| exonuclease family protein [Escherichia coli] Length = 289 Score = 41.1 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 61/188 (32%), Gaps = 9/188 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ETTGL + D++IE+ ++ L P + P+A+ +HGIT+ L Sbjct: 108 VLDTETTGLG-ERDQVIELAVTDIRGAVL----LCTRLRP-TVEIDPQAMGVHGITETEL 161 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNA---KFDVGFINAELQRINKDPLDPSRIIDTL 127 ++P+++ + + ++ + Q + + Sbjct: 162 SNEPTWTQVAPALARLLSGRHLVIFNPSFDSRMLRQTASAFGDQLSWWQEQNCLCAMKLA 221 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + A + H A D+ +D+ ++ + + Sbjct: 222 ADAFGSTNRHGTISLADATCEAGVSWKGRAHSAATDAIATADLVTEIAKVQRDLVVQLQE 281 Query: 188 NEDRFFKE 195 + + E Sbjct: 282 LQSKGNLE 289 >gi|161869352|ref|YP_001598519.1| oligoribonuclease [Neisseria meningitidis 053442] gi|161594905|gb|ABX72565.1| oligoribonuclease [Neisseria meningitidis 053442] gi|325135642|gb|EGC58259.1| oligoribonuclease [Neisseria meningitidis M0579] Length = 187 Score = 41.1 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + DRIIE+ + Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30 >gi|95930297|ref|ZP_01313034.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM 684] gi|95133549|gb|EAT15211.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM 684] Length = 193 Score = 41.1 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 8/172 (4%) Query: 7 MRKIVF---DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 MR+ F D+ETTGLD D II AV++ T + ++ ++ P PE+++ H Sbjct: 1 MREAAFCIVDLETTGLDLTTDTIINAAAVKIKKGRIT-KIYETYVKPPT-SIPPESIQFH 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD+ L DKPS + EF F + H+ FD+ ++ L+ L+ + Sbjct: 59 GITDDMLVDKPSIGEVLPEFMTFIGDSM--ITGHHINFDLKMLDRHLRENYDCNLEGAPW 116 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ + + ++ + I +H AL DS + V+++++ Sbjct: 117 LDTMLLHKLVMENNTSTQLDDLLNV-YCIDCEQRHRALGDSIATAKVFLRIL 167 >gi|213586760|ref|ZP_03368586.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 192 Score = 41.1 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 54/175 (30%), Gaps = 10/175 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL + I+EI ++ + + P + EA+ +HGIT+E Sbjct: 26 YLFIDTETTGLG-DDAEIVEICIIDSHGFIM----LNTLIKP-TKPIPDEAIAIHGITNE 79 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+++ I + F +NA FD+ I + ++ Sbjct: 80 MVAFAPAWTDICGAVEELFRRFGFV--IYNADFDLRLIRQTYALNERPSEGAPWMLAA-- 135 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + G A + + + + Sbjct: 136 HSVCAMKLYAEYRGEPGRFNGYKWHKLVDAAAHEGVVVEGKAHRALADCKMTLGL 190 >gi|149041576|gb|EDL95417.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus] Length = 254 Score = 41.1 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66 >gi|296314314|ref|ZP_06864255.1| oligoribonuclease [Neisseria polysaccharea ATCC 43768] gi|296838975|gb|EFH22913.1| oligoribonuclease [Neisseria polysaccharea ATCC 43768] Length = 187 Score = 41.1 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + DRIIE+ + Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30 >gi|198282567|ref|YP_002218888.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667091|ref|YP_002424758.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247088|gb|ACH82681.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519304|gb|ACK79890.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 23270] Length = 201 Score = 41.1 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 7/46 (15%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP 50 +V D+ET G DS+ + ++E+ A+ + + + T + P Sbjct: 14 VVVDVETAGFDSERNALLEVAAIII--GGEVGQLRPVATHHFQVQP 57 >gi|241686335|ref|XP_002411687.1| exonuclease, putative [Ixodes scapularis] gi|215504479|gb|EEC13973.1| exonuclease, putative [Ixodes scapularis] Length = 337 Score = 41.1 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 24/195 (12%), Positives = 55/195 (28%), Gaps = 18/195 (9%) Query: 9 KIVFDIETTG----LDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62 +V D E T IIE +++ + TF ++ P R+ S +L Sbjct: 106 FLVLDFEATCSREKPPPHPQEIIEFPVLKVNGRSFQVESTFHQYVQPRVHRELSSFCTEL 165 Query: 63 HGITDEFLKDKPSF-----SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 GI + + ++P F + + +A D + + Sbjct: 166 TGIIQDMVDEQPFFEEVLEKFHQWMCSEGLLGPPEKRVAFVTFGDWDLQKMLPSQCSYFK 225 Query: 118 LDPSRIIDTLSIARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + + + ++ P + + C+ + H + + V Sbjct: 226 IPVPEYLTSWINLKKAFVEATGHWPKTLPETLEYCRLEQVGRHHSGIGSHDMPEVCILRV 285 Query: 171 YIKMMVGGSQINFGF 185 + + F Sbjct: 286 DLDYPHEQHDSHVDF 300 >gi|213965916|ref|ZP_03394107.1| oligoribonuclease [Corynebacterium amycolatum SK46] gi|213951494|gb|EEB62885.1| oligoribonuclease [Corynebacterium amycolatum SK46] Length = 217 Score = 41.1 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 15/25 (60%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D E TGL+ + I+EI A+ Sbjct: 16 RIVWIDCEMTGLEPERHVIVEIAAL 40 >gi|281345321|gb|EFB20905.1| hypothetical protein PANDA_019321 [Ailuropoda melanoleuca] Length = 311 Score = 41.1 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G + IIE V L ++ + TFQ ++ P S + L G Sbjct: 94 IIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINLTG 153 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + + D+ + + + + Sbjct: 154 ITQDQVDRADTFPQVLKQVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCRLSRLKYP 213 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G+ R H L DS ++ + ++M+ Sbjct: 214 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAVRML 272 Query: 176 VGGSQINFG 184 G ++ Sbjct: 273 QDGCELRIN 281 >gi|227832010|ref|YP_002833717.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum ATCC 700975] gi|262184134|ref|ZP_06043555.1| DNA polymerase III subunit epsilon [Corynebacterium aurimucosum ATCC 700975] gi|227453026|gb|ACP31779.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum ATCC 700975] Length = 516 Score = 41.1 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 19/52 (36%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 + I+TTG+ R++ + A+ L + + F + P Sbjct: 74 FVALTIQTTGIHPSTGRLLTVDALTLNAEGEIGQEFHAVINPGEDPGPKHLH 125 >gi|194290291|ref|YP_002006198.1| oligoribonuclease [Cupriavidus taiwanensis LMG 19424] gi|193224126|emb|CAQ70135.1| oligoribonuclease [Cupriavidus taiwanensis LMG 19424] Length = 211 Score = 41.1 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL DRIIE+ V Sbjct: 19 LDMEMTGLQPDTDRIIEVAVV 39 >gi|59800509|ref|YP_207221.1| oligoribonuclease [Neisseria gonorrhoeae FA 1090] gi|194097641|ref|YP_002000679.1| oligoribonuclease [Neisseria gonorrhoeae NCCP11945] gi|239998172|ref|ZP_04718096.1| oligoribonuclease [Neisseria gonorrhoeae 35/02] gi|240013354|ref|ZP_04720267.1| oligoribonuclease [Neisseria gonorrhoeae DGI18] gi|240015799|ref|ZP_04722339.1| oligoribonuclease [Neisseria gonorrhoeae FA6140] gi|240079936|ref|ZP_04724479.1| oligoribonuclease [Neisseria gonorrhoeae FA19] gi|240112143|ref|ZP_04726633.1| oligoribonuclease [Neisseria gonorrhoeae MS11] gi|240114889|ref|ZP_04728951.1| oligoribonuclease [Neisseria gonorrhoeae PID18] gi|240117093|ref|ZP_04731155.1| oligoribonuclease [Neisseria gonorrhoeae PID1] gi|240120427|ref|ZP_04733389.1| oligoribonuclease [Neisseria gonorrhoeae PID24-1] gi|240122729|ref|ZP_04735685.1| oligoribonuclease [Neisseria gonorrhoeae PID332] gi|240124920|ref|ZP_04737806.1| oligoribonuclease [Neisseria gonorrhoeae SK-92-679] gi|240127431|ref|ZP_04740092.1| oligoribonuclease [Neisseria gonorrhoeae SK-93-1035] gi|254492949|ref|ZP_05106120.1| oligoribonuclease [Neisseria gonorrhoeae 1291] gi|260441295|ref|ZP_05795111.1| oligoribonuclease [Neisseria gonorrhoeae DGI2] gi|268594024|ref|ZP_06128191.1| oligoribonuclease [Neisseria gonorrhoeae 35/02] gi|268596076|ref|ZP_06130243.1| oligoribonuclease [Neisseria gonorrhoeae FA19] gi|268598201|ref|ZP_06132368.1| oligoribonuclease [Neisseria gonorrhoeae MS11] gi|268600546|ref|ZP_06134713.1| oligoribonuclease [Neisseria gonorrhoeae PID18] gi|268602779|ref|ZP_06136946.1| oligoribonuclease [Neisseria gonorrhoeae PID1] gi|268681328|ref|ZP_06148190.1| oligoribonuclease [Neisseria gonorrhoeae PID332] gi|268683499|ref|ZP_06150361.1| oligoribonuclease [Neisseria gonorrhoeae SK-92-679] gi|268685805|ref|ZP_06152667.1| oligoribonuclease [Neisseria gonorrhoeae SK-93-1035] gi|291044651|ref|ZP_06570360.1| oligoribonuclease [Neisseria gonorrhoeae DGI2] gi|293397760|ref|ZP_06641966.1| oligoribonuclease [Neisseria gonorrhoeae F62] gi|81311266|sp|Q5FAH8|ORN_NEIG1 RecName: Full=Oligoribonuclease gi|59717404|gb|AAW88809.1| putative oligo ribonuclease [Neisseria gonorrhoeae FA 1090] gi|193932931|gb|ACF28755.1| oligoribonuclease [Neisseria gonorrhoeae NCCP11945] gi|226511989|gb|EEH61334.1| oligoribonuclease [Neisseria gonorrhoeae 1291] gi|268547413|gb|EEZ42831.1| oligoribonuclease [Neisseria gonorrhoeae 35/02] gi|268549864|gb|EEZ44883.1| oligoribonuclease [Neisseria gonorrhoeae FA19] gi|268582332|gb|EEZ47008.1| oligoribonuclease [Neisseria gonorrhoeae MS11] gi|268584677|gb|EEZ49353.1| oligoribonuclease [Neisseria gonorrhoeae PID18] gi|268586910|gb|EEZ51586.1| oligoribonuclease [Neisseria gonorrhoeae PID1] gi|268621612|gb|EEZ54012.1| oligoribonuclease [Neisseria gonorrhoeae PID332] gi|268623783|gb|EEZ56183.1| oligoribonuclease [Neisseria gonorrhoeae SK-92-679] gi|268626089|gb|EEZ58489.1| oligoribonuclease [Neisseria gonorrhoeae SK-93-1035] gi|291011545|gb|EFE03541.1| oligoribonuclease [Neisseria gonorrhoeae DGI2] gi|291611706|gb|EFF40775.1| oligoribonuclease [Neisseria gonorrhoeae F62] gi|317163462|gb|ADV07003.1| oligoribonuclease [Neisseria gonorrhoeae TCDC-NG08107] Length = 187 Score = 41.1 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + DRIIE+ + Sbjct: 10 LDMEMTGLNPETDRIIEVAMI 30 >gi|330954430|gb|EGH54690.1| exonuclease [Pseudomonas syringae Cit 7] Length = 180 Score = 41.1 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 52/175 (29%), Gaps = 8/175 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR----KNSPEAL 60 +V D+E TT G +IEIGA + + F+ F+ P R E Sbjct: 4 WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCRELT 63 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++ + + + F + + W + Q L Sbjct: 64 HINQSSIDSAAPLTTVWPQFERWLSHHRARIVGWASWGDYDRQQLEEEWRQHHLDSALSS 123 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ + + + + +H AL+D+ + + ++ Sbjct: 124 MPHVNLKQRFAQARHLQKPMGLNSALQLAGMQFSGQQHRALVDARNTARLLPLIL 178 >gi|293392189|ref|ZP_06636523.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952723|gb|EFE02842.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D7S-1] Length = 182 Score = 41.1 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +RIIEI Sbjct: 11 IDLEMTGLDPEKERIIEIA 29 >gi|229366424|gb|ACQ58192.1| Oligoribonuclease, mitochondrial precursor [Anoplopoma fimbria] Length = 266 Score = 41.1 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%) Query: 2 IRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 + M R + D+E TGLD + D+IIE+ + Sbjct: 65 MSSIAMSQRMVWVDLEMTGLDIEKDQIIEMACI 97 >gi|325068103|ref|ZP_08126776.1| Exonuclease RNase T and DNA polymerase III [Actinomyces oris K20] Length = 260 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 FD ETTG+D DR++ V Sbjct: 28 FDTETTGVDPSGDRLVTAALV 48 >gi|320533707|ref|ZP_08034325.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337] gi|320134075|gb|EFW26405.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337] Length = 264 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 FD ETTG+D DR++ V Sbjct: 32 FDTETTGVDPSGDRLVTAALV 52 >gi|326774035|ref|ZP_08233317.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505] gi|326636174|gb|EGE37078.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505] Length = 259 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 FD ETTG+D DR++ V Sbjct: 27 FDTETTGVDPSGDRLVTAALV 47 >gi|269955883|ref|YP_003325672.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas cellulosilytica DSM 15894] gi|269304564|gb|ACZ30114.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas cellulosilytica DSM 15894] Length = 212 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 17/25 (68%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D E TGLD++ D +IE+ AV Sbjct: 9 RIVWIDCEMTGLDARADALIEVAAV 33 >gi|71908614|ref|YP_286201.1| oligoribonuclease [Dechloromonas aromatica RCB] gi|71848235|gb|AAZ47731.1| Exonuclease [Dechloromonas aromatica RCB] Length = 184 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ DRIIE+ V Sbjct: 11 LDMEMTGLNPDGDRIIEMAMV 31 >gi|85706653|ref|ZP_01037745.1| probable DNA polymerase III (epsilon chain) protein [Roseovarius sp. 217] gi|85668711|gb|EAQ23580.1| probable DNA polymerase III (epsilon chain) protein [Roseovarius sp. 217] Length = 193 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 2/65 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+E G IIE+G VE+ T R P + ++ Sbjct: 6 AVDVEGNGATP--PEIIELGIVEMDGLRLTGRIKHWQFRPELEITPIVSRIHGITNEDVA 63 Query: 71 KDKPS 75 P Sbjct: 64 DAPPF 68 >gi|127511493|ref|YP_001092690.1| oligoribonuclease [Shewanella loihica PV-4] gi|166216587|sp|A3QAD3|ORN_SHELP RecName: Full=Oligoribonuclease gi|126636788|gb|ABO22431.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica PV-4] Length = 181 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ + DRIIEI Sbjct: 11 VDLEMTGLEPEVDRIIEIA 29 >gi|258624141|ref|ZP_05719091.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258583572|gb|EEW08371.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 289 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 8/119 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ETTGL + D++IE+ ++ L P P+A+ +HGIT+ L Sbjct: 108 VLDTETTGLG-ERDQVIELAVTDIRGEVL----LCTRLRP-TVGIDPQAMGVHGITEAEL 161 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++P+++ + + ++ + N+ FD + ++ Sbjct: 162 SNEPTWTQVAPALARLLSGRH--LVIFNSSFDSRMLRQTASAFGDQLSWWQEQNCLCAM 218 >gi|297156433|gb|ADI06145.1| Exonuclease RNase T and DNA polymerase III [Streptomyces bingchenggensis BCW-1] Length = 188 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 55/173 (31%), Gaps = 11/173 (6%) Query: 1 MIRKNKMRKIVFDIETT---GLDSKN--DRIIEIGAVELL---DYSKTNRTFQVFLCPNG 52 M R R +V D+E T G + IIEIG EL R+ + P Sbjct: 1 MARLRLDRILVVDVEATCWDGPAPEGMESEIIEIGLCELDVATGERPVRRSLM--VRPEH 58 Query: 53 RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 SP +L IT E F+ D + W + ++D + Sbjct: 59 STVSPFCTELTTITPEQAAAGIGFAEACEILRDEHGAGHRVWASW-GEYDRAQFTRQSSA 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 N +R ++ ++ H R + + + H + D+ Sbjct: 118 TNIRYPFGTRHLNVKNLYSLMHSLDRELGMAGALSHAGLSLEGTHHRGVDDAW 170 >gi|238603146|ref|XP_002395870.1| hypothetical protein MPER_03997 [Moniliophthora perniciosa FA553] gi|215467348|gb|EEB96800.1| hypothetical protein MPER_03997 [Moniliophthora perniciosa FA553] Length = 151 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 3/57 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD + D+I+EI AV + + + + + + ++ Sbjct: 18 IDCEMTGLDPETDKIMEI-AVLITNGNLELVDEGIEYIVKLDRKQLDRMGEWCTKQH 73 >gi|45271975|gb|AAS57208.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45271978|gb|AAS57210.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45271981|gb|AAS57212.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45271984|gb|AAS57214.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45271987|gb|AAS57216.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45271990|gb|AAS57218.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45271993|gb|AAS57220.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45271996|gb|AAS57222.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45271999|gb|AAS57224.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272002|gb|AAS57226.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272005|gb|AAS57228.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272008|gb|AAS57230.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272011|gb|AAS57232.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272014|gb|AAS57234.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272017|gb|AAS57236.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272020|gb|AAS57238.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272023|gb|AAS57240.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272026|gb|AAS57242.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272029|gb|AAS57244.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272032|gb|AAS57246.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272035|gb|AAS57248.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272038|gb|AAS57250.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272041|gb|AAS57252.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272044|gb|AAS57254.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272047|gb|AAS57256.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272050|gb|AAS57258.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272053|gb|AAS57260.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272056|gb|AAS57262.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272059|gb|AAS57264.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272062|gb|AAS57266.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272065|gb|AAS57268.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272068|gb|AAS57270.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272071|gb|AAS57272.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272074|gb|AAS57274.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272077|gb|AAS57276.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272080|gb|AAS57278.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272083|gb|AAS57280.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272086|gb|AAS57282.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272089|gb|AAS57284.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|45272092|gb|AAS57286.1| DNA polymerase III epsilon subunit [Coxiella burnetii] gi|50898188|gb|AAT86047.1| DNA polymerase III epsilon subunit [Coxiella burnetii] Length = 16 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 10/16 (62%), Positives = 12/16 (75%) Query: 7 MRKIVFDIETTGLDSK 22 MR+IV D ETTGL + Sbjct: 1 MRQIVLDTETTGLVPE 16 >gi|88855197|ref|ZP_01129862.1| oligoribonuclease [marine actinobacterium PHSC20C1] gi|88815725|gb|EAR25582.1| oligoribonuclease [marine actinobacterium PHSC20C1] Length = 206 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50 D E TGLD + D ++E+ V D + + + P Sbjct: 11 IDCEMTGLDVEIDELVEVAVVITDYDLVPVDEGMSIVIKP 50 >gi|114332250|ref|YP_748472.1| oligoribonuclease [Nitrosomonas eutropha C91] gi|122313081|sp|Q0ADS5|ORN_NITEC RecName: Full=Oligoribonuclease gi|114309264|gb|ABI60507.1| Exonuclease, RNase T and DNA polymerase III [Nitrosomonas eutropha C91] Length = 181 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ D IIEI V Sbjct: 11 IDMEMTGLNPNTDCIIEIALV 31 >gi|58337027|ref|YP_193612.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM] gi|227903590|ref|ZP_04021395.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796] gi|58254344|gb|AAV42581.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM] gi|227868477|gb|EEJ75898.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796] Length = 177 Score = 40.7 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 5/160 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET ++ + V + + +R F + P +++H IT Sbjct: 1 MNFIAMDFETANHYPESA--CSLALVMVRNNKIVDR-FYTVINPQ-MPFDARNIQVHQIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +K+ P+ + + AHN++FD + L R N + I Sbjct: 57 AEDVKNAPT-MAEVWPKIKGLYQPGMLVAAHNSRFDTNVMRQSLARYNIEEPHYLVIDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + + + L+++ + + H + ++ Sbjct: 116 ATSKLFEPELPNHKLDTVSDALNVELWHHHNALSDSEACA 155 >gi|56478391|ref|YP_159980.1| oligoribonuclease [Aromatoleum aromaticum EbN1] gi|81821041|sp|Q5P0T5|ORN_AZOSE RecName: Full=Oligoribonuclease gi|56314434|emb|CAI09079.1| oligoribonuclease [Aromatoleum aromaticum EbN1] Length = 183 Score = 40.7 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL +DRIIEI V Sbjct: 11 LDMEMTGLQPDSDRIIEIAIV 31 >gi|297690289|ref|XP_002822552.1| PREDICTED: oligoribonuclease, mitochondrial-like isoform 1 [Pongo abelii] gi|332208258|ref|XP_003253217.1| PREDICTED: oligoribonuclease, mitochondrial-like [Nomascus leucogenys] Length = 237 Score = 40.7 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66 >gi|228982489|ref|ZP_04142748.1| Exonuclease [Bacillus thuringiensis Bt407] gi|228776672|gb|EEM24980.1| Exonuclease [Bacillus thuringiensis Bt407] Length = 186 Score = 40.7 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 42/160 (26%), Gaps = 7/160 (4%) Query: 11 VFDIETT----GLDSKN--DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLH 63 + D+E+T G + +N IIEIGAV L + + +Q F+ P E Sbjct: 6 IIDLESTCFKRGAEPRNFFSEIIEIGAVVLHTETFEIVEEYQTFVKPVLFPTLSEYCLHL 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + D + A +D +R + Sbjct: 66 TTIRQDEVDYGKSIKDAMNEIASLYNKYDCVFASWGFYDKKQFKQVCERFGVNYPFGHLH 125 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 I + K + + + G Sbjct: 126 ISLKHQHGTWTRQRPMGMERALKMHHLPLEGIHHRGIDDA 165 >gi|50954845|ref|YP_062133.1| DNA polymerase III subunit epsilon [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951327|gb|AAT89028.1| DNA polymerase III, epsilon subunit [Leifsonia xyli subsp. xyli str. CTCB07] Length = 227 Score = 40.7 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%) Query: 11 VFDIETTGLDSKNDRIIE--IGAVELLDYSKTNRTFQVFLCPN 51 VFD+ETTG+D + R++ IG ++ R++ L P Sbjct: 9 VFDLETTGVDVETARVVTAHIGLLDEHGEIVHGRSW--LLDPG 49 >gi|74196748|dbj|BAE43110.1| unnamed protein product [Mus musculus] Length = 237 Score = 40.7 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66 >gi|27229283|ref|NP_077195.2| oligoribonuclease, mitochondrial precursor [Mus musculus] gi|78100196|sp|Q9D8S4|ORN_MOUSE RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA exonuclease 2 homolog; AltName: Full=Small fragment nuclease; Flags: Precursor gi|26357838|dbj|BAB25219.2| unnamed protein product [Mus musculus] gi|148693756|gb|EDL25703.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Mus musculus] Length = 237 Score = 40.7 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66 >gi|56605730|ref|NP_001008327.1| oligoribonuclease, mitochondrial precursor [Rattus norvegicus] gi|81910234|sp|Q5U1X1|ORN_RAT RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA exonuclease 2 homolog; AltName: Full=Small fragment nuclease; Flags: Precursor gi|55562847|gb|AAH86420.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Rattus norvegicus] gi|149041578|gb|EDL95419.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_c [Rattus norvegicus] Length = 237 Score = 40.7 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66 >gi|262280955|ref|ZP_06058738.1| oligoribonuclease [Acinetobacter calcoaceticus RUH2202] gi|262257855|gb|EEY76590.1| oligoribonuclease [Acinetobacter calcoaceticus RUH2202] Length = 188 Score = 40.7 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 20/37 (54%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37 M R I D+E TGLD+ ND+IIEI + D Sbjct: 1 MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDN 37 >gi|325917447|ref|ZP_08179656.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas vesicatoria ATCC 35937] gi|325536321|gb|EGD08108.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas vesicatoria ATCC 35937] Length = 194 Score = 40.7 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 13/23 (56%), Positives = 15/23 (65%) Query: 8 RKIVFDIETTGLDSKNDRIIEIG 30 R I D+E TGLD+ D IIEI Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32 >gi|94265398|ref|ZP_01289151.1| hypothetical protein MldDRAFT_4837 [delta proteobacterium MLMS-1] gi|93454100|gb|EAT04432.1| hypothetical protein MldDRAFT_4837 [delta proteobacterium MLMS-1] Length = 184 Score = 40.7 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 47/167 (28%), Gaps = 8/167 (4%) Query: 7 MRKIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M I+FD ET G+ I +E+ A + D+ F+ L N + Sbjct: 1 MDWIIFDTETNGIRP---PIFTLELAAQRMRDWLPEGPPFRRLLNHNQDIQPEASRINGF 57 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PS 121 + +D ++++F D+ + + D I L Sbjct: 58 TREILERDDEPPLEVYADFADYAADLPFVAYNLDYDLDKVLIAHRRGLHTWQQLQAFVMK 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 + + ++ + + +G S A Sbjct: 118 TWFPSRITFGKHKGRHFSEARTDPELHGWLQWLASSSNARSAEMGRW 164 >gi|254974985|ref|ZP_05271457.1| putative exonuclease [Clostridium difficile QCD-66c26] gi|255092373|ref|ZP_05321851.1| putative exonuclease [Clostridium difficile CIP 107932] gi|255314113|ref|ZP_05355696.1| putative exonuclease [Clostridium difficile QCD-76w55] gi|255516791|ref|ZP_05384467.1| putative exonuclease [Clostridium difficile QCD-97b34] gi|255649892|ref|ZP_05396794.1| putative exonuclease [Clostridium difficile QCD-37x79] gi|260683047|ref|YP_003214332.1| putative exonuclease [Clostridium difficile CD196] gi|260686645|ref|YP_003217778.1| putative exonuclease [Clostridium difficile R20291] gi|260209210|emb|CBA62475.1| putative exonuclease [Clostridium difficile CD196] gi|260212661|emb|CBE03715.1| putative exonuclease [Clostridium difficile R20291] Length = 1039 Score = 40.7 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 30/251 (11%), Positives = 73/251 (29%), Gaps = 27/251 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIE +GLD N I+E+GAV++ D+ T++ + + Sbjct: 12 VFLDIEVSGLDCLNSEILEVGAVKVKDWKIY--TYESLIKNKFEVPIEVFSVCKNLDKND 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ + +F + + K + + L +I Sbjct: 70 LEIANEIELVEDRLVNFVEDSFIICHDLSLKKKFFEYHMPKLKNKFIDLIELAVILEPYH 129 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT-- 187 +N L + + + + + LL ++F + Sbjct: 130 KDYSLEYLKNTLTNCNSKVENRALSDAIDIINIVNCLLVKFNNYEKTTLEPLSFKINSYL 189 Query: 188 --------------------NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 + +++ + + K+ + +I EE +++ Sbjct: 190 KKFNLPTWEWSKFLEEANYDLSNNINIKKEYNIFDSKEEKKKERETLKILNEEEKNYEEL 249 Query: 228 IQTLGKNAIWD 238 ++ IW+ Sbjct: 250 LKY---KTIWE 257 >gi|145631577|ref|ZP_01787343.1| oligoribonuclease [Haemophilus influenzae R3021] gi|144982777|gb|EDJ90303.1| oligoribonuclease [Haemophilus influenzae R3021] Length = 182 Score = 40.7 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +RIIEI Sbjct: 11 IDLEMTGLDPEKERIIEIA 29 >gi|241763728|ref|ZP_04761776.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] gi|241367033|gb|EER61418.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] Length = 195 Score = 40.7 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D E TGL+ DR++EI V Sbjct: 25 LDCEMTGLEPDTDRLLEIAVV 45 >gi|269213888|ref|ZP_05983052.2| oligoribonuclease [Neisseria cinerea ATCC 14685] gi|269145276|gb|EEZ71694.1| oligoribonuclease [Neisseria cinerea ATCC 14685] Length = 188 Score = 40.7 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + DRIIE+ + Sbjct: 11 LDMEMTGLNPETDRIIEVAMI 31 >gi|134044532|ref|YP_001101863.1| putative exonuclease [Yersinia ruckeri] gi|133904895|gb|ABO40912.1| putative exonuclease [Yersinia ruckeri] Length = 289 Score = 40.7 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 8/119 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ETTGL + D++IE+ ++ L P + P+A+ +HGI + L Sbjct: 108 VLDTETTGLG-ERDQVIELAVTDIRGAVL----LCTRLRP-TVEIDPQAMGVHGINEAEL 161 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++P+++ + + ++ + N+ FD + ++ Sbjct: 162 SNEPTWNQVAPALARLLSGRH--LVIFNSSFDSRMLRQTASAFGDQLSWWQEQNCLCAM 218 >gi|302563935|ref|NP_001180742.1| oligoribonuclease, mitochondrial [Macaca mulatta] gi|90080269|dbj|BAE89616.1| unnamed protein product [Macaca fascicularis] Length = 237 Score = 40.7 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66 >gi|56751271|ref|YP_171972.1| hypothetical protein syc1262_c [Synechococcus elongatus PCC 6301] gi|81299062|ref|YP_399270.1| exonuclease [Synechococcus elongatus PCC 7942] gi|56686230|dbj|BAD79452.1| unknown protein [Synechococcus elongatus PCC 6301] gi|81167943|gb|ABB56283.1| Exonuclease [Synechococcus elongatus PCC 7942] Length = 256 Score = 40.7 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 4/43 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV--FLCPN 51 V D+ETTG R+IE+G L FQ L P Sbjct: 24 VVDVETTGFKPPQARVIELGI--LQATLAEGIQFQQAELLNPG 64 >gi|297153856|gb|ADI03568.1| hypothetical protein SBI_00447 [Streptomyces bingchenggensis BCW-1] Length = 200 Score = 40.7 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 10/52 (19%) Query: 9 KIVFDIE-TT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50 +VFD+E TT G + I++IGA+ L + ++ + P Sbjct: 4 FVVFDLEFTTWQGALEQDWGAPGQLREIVQIGALRLREDFSVVEEYEALVRP 55 >gi|227514420|ref|ZP_03944469.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC 14931] gi|227087286|gb|EEI22598.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC 14931] Length = 189 Score = 40.7 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 63/176 (35%), Gaps = 7/176 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 I D ET +K + + + F + P ++HGI + Sbjct: 12 NFIAMDFET--ASAKRFSACSLAITIVRNSQ-IQDEFYTLINPQTPFF-WRNTQVHGIHE 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +KD P+F ++ +F + IAHNA FD + L +P + Sbjct: 68 RDVKDAPTFPEVWEHIQEF-FTPDKLVIAHNATFDNSVLKNTLLHFEIEPPVYQTLDTLK 126 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + + LN++C + I + H H AL D+H +++ + Sbjct: 127 TSRQLFPAFPNHKLNTICDQLNIDLHH--HHNALDDAHACANILLYQANHFGTAPL 180 >gi|5817183|emb|CAB53690.1| hypothetical protein [Homo sapiens] gi|49065426|emb|CAG38531.1| DKFZP566E144 [Homo sapiens] gi|117646830|emb|CAL37530.1| hypothetical protein [synthetic construct] gi|208965440|dbj|BAG72734.1| REX2, RNA exonuclease 2 homolog [synthetic construct] Length = 237 Score = 40.7 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66 >gi|333030386|ref|ZP_08458447.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis DSM 18011] gi|332740983|gb|EGJ71465.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis DSM 18011] Length = 279 Score = 40.7 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 51/166 (30%), Gaps = 16/166 (9%) Query: 9 KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 I D+ET T + I +IG +LD + + P +HGI + Sbjct: 6 FIAIDVETATSAKPRF--ICQIGLAYVLDGEIVKKE-SYLVQPPHNHIEYRNTMIHGIYE 62 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 P+ ++ + + + +AHNAKFD I L S I Sbjct: 63 SDTAQAPTLPQVWEKIGFDL--RYNQLVAHNAKFDEAVIAENLFHFRIPNNLRSFICTYE 120 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + + H A D+ + YI Sbjct: 121 LLHLGLEDLCYAYQIAY----------TNHHDACFDAACCAQFYIN 156 >gi|315609065|ref|ZP_07884035.1| exonuclease [Prevotella buccae ATCC 33574] gi|315249269|gb|EFU29288.1| exonuclease [Prevotella buccae ATCC 33574] Length = 163 Score = 40.7 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 2/127 (1%) Query: 40 TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 +F + P + ++HG+T + P F ++ + + +AHN+ Sbjct: 32 IADSFYSLIQPEPNYYTYWCTRVHGLTQADTETAPVFPHVWERITELIGD--LPLVAHNS 89 Query: 100 KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 FD + A + D D + R + L ++ G ++ Sbjct: 90 PFDESCLKAVFRCYQMDYPDYRFYDTLRTARRVFPHLPNHQLQTVAAACGYDLTCHHHAL 149 Query: 160 ALLDSHL 166 A ++ Sbjct: 150 ADAEACA 156 >gi|146344208|ref|YP_001202064.1| oligoribonuclease [Pseudomonas fluorescens SBW25] gi|40789171|emb|CAE84149.1| oligoribonuclease [Pseudomonas fluorescens] gi|146188020|emb|CAM96350.1| plant-inducible oligoribonuclease [Pseudomonas fluorescens SBW25] Length = 195 Score = 40.7 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 12/42 (28%) Query: 12 FDIETTGL------DSKNDRIIEIGAVELLDYSKTNRTFQVF 47 D+ETTG RI+EIGAV T+ F V Sbjct: 16 LDLETTGFTELFDRRVYEHRILEIGAV------VTDEHFTVL 51 >gi|323498389|ref|ZP_08103386.1| oligoribonuclease [Vibrio sinaloensis DSM 21326] gi|323316531|gb|EGA69545.1| oligoribonuclease [Vibrio sinaloensis DSM 21326] Length = 181 Score = 40.7 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 10/18 (55%), Positives = 13/18 (72%) Query: 13 DIETTGLDSKNDRIIEIG 30 D+E TGLD + +IIEI Sbjct: 12 DLEMTGLDPETHKIIEIA 29 >gi|313203394|ref|YP_004042051.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter propionicigenes WB4] gi|312442710|gb|ADQ79066.1| Exonuclease RNase T and DNA polymerase III [Paludibacter propionicigenes WB4] Length = 182 Score = 40.7 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 55/161 (34%), Gaps = 8/161 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGI 65 M D ET + + EIG ++ + T ++ + P +P ++HGI Sbjct: 1 MNFTAIDFET----AHAEFPCEIGLTKVENGIIT-KSQSWLIKPACFPYMNPWNQRVHGI 55 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + +F ++ E + +AHNA FD+ + + L + Sbjct: 56 SSADVSSASTFEELWGELKLWIENDY--LVAHNAAFDMRVLRSVLAYYDLAVPRTEYFCS 113 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + + L + + + I+ +H + Sbjct: 114 VSISRKTWKHLPSHSLGVVSQFHNISFNHHRAGDDARACAI 154 >gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776] gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776] Length = 957 Score = 40.7 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 9 KIVFDIETTGLDSKNDRII 27 +I D+ETTGLD D I+ Sbjct: 376 QICIDLETTGLDPLRDEIV 394 >gi|226226100|ref|YP_002760206.1| DNA polymerase II [Gemmatimonas aurantiaca T-27] gi|226089291|dbj|BAH37736.1| DNA polymerase II [Gemmatimonas aurantiaca T-27] Length = 825 Score = 40.7 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 11/15 (73%), Positives = 12/15 (80%) Query: 12 FDIETTGLDSKNDRI 26 FD+ETTGLD DRI Sbjct: 168 FDLETTGLDPATDRI 182 >gi|307150076|ref|YP_003885460.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC 7822] gi|306980304|gb|ADN12185.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC 7822] Length = 199 Score = 40.7 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 41/135 (30%), Gaps = 15/135 (11%) Query: 9 KIVFDIETTG----LDSKNDR---------IIEIGAVELLDYSKTN-RTFQVFLCPNGRK 54 +V D+E T ++ +R IIEIGAV + T FQ F+ P Sbjct: 10 YLVLDLEATCCELLRSTEGERGTIKRHEMEIIEIGAVMVEKQDLTIVAEFQTFIKPVRYP 69 Query: 55 N-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 + L IT + PS+ + + + +D + + Sbjct: 70 ILTNFCKSLTSITQTQVDQAPSYPEAAILLKKWLSNYSNAVFGSWGDYDRHQFLQDSKFH 129 Query: 114 NKDPLDPSRIIDTLS 128 ++ Sbjct: 130 QVPFPIAYPHVNLKQ 144 >gi|296216233|ref|XP_002754546.1| PREDICTED: oligoribonuclease, mitochondrial-like [Callithrix jacchus] Length = 237 Score = 40.7 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66 >gi|146327084|gb|AAI41731.1| LOC100049744 protein [Xenopus laevis] Length = 273 Score = 40.7 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 4/83 (4%) Query: 9 KIVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKN-SPEALKLHG 64 +V D E T + IIE ++L + TF ++ P +P +L G Sbjct: 82 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHTYVQPVVHPQLTPFCTELTG 141 Query: 65 ITDEFLKDKPSFSSIFSEFWDFF 87 I + + +P+ S + ++ Sbjct: 142 IIQDMVDGQPTLSQVLERVDEWM 164 >gi|224496106|ref|NP_056338.2| oligoribonuclease, mitochondrial precursor [Homo sapiens] gi|55637001|ref|XP_508768.1| PREDICTED: oligoribonuclease, mitochondrial isoform 2 [Pan troglodytes] gi|116242694|sp|Q9Y3B8|ORN_HUMAN RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA exonuclease 2 homolog; AltName: Full=Small fragment nuclease; Flags: Precursor gi|62897961|dbj|BAD96920.1| small fragment nuclease variant [Homo sapiens] gi|79158846|gb|AAI07888.1| REXO2 protein [Homo sapiens] gi|85397890|gb|AAI05025.1| Small fragment nuclease [Homo sapiens] gi|85397892|gb|AAI05027.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Homo sapiens] gi|119587654|gb|EAW67250.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_b [Homo sapiens] gi|189065256|dbj|BAG34979.1| unnamed protein product [Homo sapiens] gi|219520365|gb|AAI43702.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Homo sapiens] Length = 237 Score = 40.7 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66 >gi|260220806|emb|CBA28738.1| Oligoribonuclease [Curvibacter putative symbiont of Hydra magnipapillata] Length = 193 Score = 40.7 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 9/21 (42%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D E TGL+ + DR++EI + Sbjct: 22 LDCEMTGLEPETDRLLEIAVI 42 >gi|313682518|ref|YP_004060256.1| DNA polymerase i [Sulfuricurvum kujiense DSM 16994] gi|313155378|gb|ADR34056.1| DNA polymerase I [Sulfuricurvum kujiense DSM 16994] Length = 909 Score = 40.7 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 10/18 (55%), Positives = 12/18 (66%) Query: 10 IVFDIETTGLDSKNDRII 27 I FD ETTGLD D ++ Sbjct: 341 IAFDTETTGLDPSKDHLV 358 >gi|300949122|ref|ZP_07163165.1| exonuclease [Escherichia coli MS 116-1] gi|300451432|gb|EFK15052.1| exonuclease [Escherichia coli MS 116-1] Length = 199 Score = 40.7 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + N+ I D+E TGLD + DRIIEI Sbjct: 19 MSANENNLIWIDLEMTGLDLERDRIIEIA 47 >gi|300836940|ref|YP_003754017.1| putative exonuclease Ycg4D [Klebsiella pneumoniae] gi|242205350|gb|ACS75438.1| putative exonuclease Ycg4D [Klebsiella pneumoniae] Length = 233 Score = 40.7 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 8/117 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ETTGL + D++IE+ ++ L P + P+A+ +HGIT+ L Sbjct: 108 VLDTETTGLG-ERDQVIELAVTDIRGAVL----LCTRLRP-TVEIDPQAMGVHGITETEL 161 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++P+++ + + ++ + N+ FD + Sbjct: 162 SNEPTWTQVAPALARLLSGRH--LVIFNSSFDSRMLRQTASAFGDQLSWWQEQNCLW 216 >gi|257454169|ref|ZP_05619440.1| exonuclease, Ycg4D [Enhydrobacter aerosaccus SK60] gi|257448430|gb|EEV23402.1| exonuclease, Ycg4D [Enhydrobacter aerosaccus SK60] Length = 217 Score = 40.7 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 52/165 (31%), Gaps = 7/165 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ET G + D+IIEI + + + + R +SP A K+HGI L Sbjct: 51 FFDTETIGGG-REDQIIEIAFCDSDRHVIID----TLIY-TDRTSSPGAFKVHGIYPHEL 104 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSI 129 KP+F I + N + +L+ + Sbjct: 105 IGKPTFIDIQPAIVQLLKGRTLYAYNANFDIRMMRQSGHKLRLQQVGIKCLCKQFADFIG 164 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + + I H + H A D+ V+ M Sbjct: 165 QYSPYFKANRYFSLSKACLHFGIEHSNAHRARPDALACVTVWQGM 209 >gi|145629185|ref|ZP_01784984.1| oligoribonuclease [Haemophilus influenzae 22.1-21] gi|145639128|ref|ZP_01794735.1| oligoribonuclease [Haemophilus influenzae PittII] gi|148827138|ref|YP_001291891.1| oligoribonuclease [Haemophilus influenzae PittGG] gi|166216262|sp|A5UFF2|ORN_HAEIG RecName: Full=Oligoribonuclease gi|144978688|gb|EDJ88411.1| oligoribonuclease [Haemophilus influenzae 22.1-21] gi|145271690|gb|EDK11600.1| oligoribonuclease [Haemophilus influenzae PittII] gi|148718380|gb|ABQ99507.1| oligoribonuclease [Haemophilus influenzae PittGG] gi|309750709|gb|ADO80693.1| Oligoribonuclease [Haemophilus influenzae R2866] Length = 182 Score = 40.7 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +RIIEI Sbjct: 11 IDLEMTGLDPEKERIIEIA 29 >gi|289620483|emb|CBI52844.1| unnamed protein product [Sordaria macrospora] Length = 180 Score = 40.7 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 7/64 (10%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D E TGL+ D IIEI + T+ L P G K + Sbjct: 23 IDCEMTGLNPDQDAIIEIYCL------ITDEQLN-LLDPTGWGAVIHQTKARMDAMDEWC 75 Query: 72 DKPS 75 + Sbjct: 76 TRVH 79 >gi|146312061|ref|YP_001177135.1| exodeoxyribonuclease X [Enterobacter sp. 638] gi|145318937|gb|ABP61084.1| Exodeoxyribonuclease X [Enterobacter sp. 638] Length = 220 Score = 40.7 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET L I+E+ +V++++ + P+ R SP+A+ +H IT+ + Sbjct: 4 VIDTETCDL---QGGIVEVASVDVINGQIV-NPMSHLVRPD-RPISPQAMAIHRITESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + + Sbjct: 59 ADKPWIEEVIPNYY-----GSTWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKSRKLNVKTPEGLHHHRALYDCYITAALLIDIMNN 153 >gi|68250317|ref|YP_249429.1| oligoribonuclease [Haemophilus influenzae 86-028NP] gi|148825742|ref|YP_001290495.1| oligoribonuclease [Haemophilus influenzae PittEE] gi|81335262|sp|Q4QJM8|ORN_HAEI8 RecName: Full=Oligoribonuclease gi|166216261|sp|A5UBG1|ORN_HAEIE RecName: Full=Oligoribonuclease gi|68058516|gb|AAX88769.1| oligoribonuclease [Haemophilus influenzae 86-028NP] gi|148715902|gb|ABQ98112.1| oligoribonuclease [Haemophilus influenzae PittEE] Length = 182 Score = 40.7 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +RIIEI Sbjct: 11 IDLEMTGLDPEKERIIEIA 29 >gi|260942501|ref|XP_002615549.1| hypothetical protein CLUG_04431 [Clavispora lusitaniae ATCC 42720] gi|238850839|gb|EEQ40303.1| hypothetical protein CLUG_04431 [Clavispora lusitaniae ATCC 42720] Length = 283 Score = 40.7 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 2/57 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD D IIEI + + ++ + + Sbjct: 38 IDCEMTGLDIAKDHIIEICCIITDGNLNIIDEKGYESTVYVPKKVLDSMNEWCVNQH 94 >gi|73979366|ref|XP_539997.2| PREDICTED: similar to histone mRNA 3 end-specific exonuclease [Canis familiaris] Length = 349 Score = 40.7 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G + IIE V L ++ + TFQ ++ P S + L G Sbjct: 132 IIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPELNTQLSDFCINLTG 191 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + + D+ + + + + Sbjct: 192 ITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCRLSRLKYP 251 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G+ R H L DS ++ + ++M+ Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAVRML 310 Query: 176 VGGSQINFG 184 G ++ Sbjct: 311 QDGCELRIN 319 >gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301] Length = 958 Score = 40.7 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 10/30 (33%) Query: 8 RKIV----------FDIETTGLDSKNDRII 27 R++V FD ETTG D NDRI+ Sbjct: 377 REVVAAVGRYPEFCFDTETTGFDIFNDRIV 406 >gi|307720332|ref|YP_003891472.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas autotrophica DSM 16294] gi|306978425|gb|ADN08460.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas autotrophica DSM 16294] Length = 247 Score = 40.7 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQV 46 ++ D ETTG + + DR+I++G V + + F Sbjct: 5 YVILDTETTGTN-EEDRVIQLGYMVLGAKEIEVHNEFCS 42 >gi|118602011|ref|YP_908711.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida] gi|118614749|ref|YP_908532.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida] gi|134044854|ref|YP_001102265.1| putative exonuclease [Yersinia pestis biovar Orientalis str. IP275] gi|134047136|ref|YP_001102053.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|165937990|ref|ZP_02226550.1| exonuclease, Ycg4D [Yersinia pestis biovar Orientalis str. IP275] gi|229516080|ref|ZP_04405530.1| hypothetical protein VCC_000094 [Vibrio cholerae RC9] gi|237810081|ref|YP_002894521.1| exonuclease family protein [Escherichia coli] gi|237810261|ref|YP_002894700.1| exonuclease family protein [Salmonella enterica] gi|300927181|ref|ZP_07142918.1| exonuclease [Escherichia coli MS 182-1] gi|309796486|ref|ZP_07690894.1| exonuclease [Escherichia coli MS 145-7] gi|118596840|dbj|BAF38144.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida] gi|118597020|dbj|BAF38323.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida] gi|133905055|gb|ABO41070.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|133905388|gb|ABO42150.1| putative exonuclease [Yersinia pestis biovar Orientalis str. IP275] gi|165914013|gb|EDR32630.1| exonuclease, Ycg4D [Yersinia pestis biovar Orientalis str. IP275] gi|229346860|gb|EEO11828.1| hypothetical protein VCC_000094 [Vibrio cholerae RC9] gi|229561745|gb|ACQ77947.1| exonuclease family protein [Salmonella enterica] gi|229561937|gb|ACQ78138.1| exonuclease family protein [Escherichia coli] gi|300416848|gb|EFK00159.1| exonuclease [Escherichia coli MS 182-1] gi|308119991|gb|EFO57253.1| exonuclease [Escherichia coli MS 145-7] gi|324008196|gb|EGB77415.1| exonuclease [Escherichia coli MS 57-2] gi|327536618|gb|AEA95451.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Dublin] Length = 289 Score = 40.7 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 8/119 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ETTGL + D++IE+ ++ L P + P+A+ +HGIT+ L Sbjct: 108 VLDTETTGLG-ERDQVIELAVTDIRGAVL----LCTRLRP-TVEIDPQAMGVHGITETEL 161 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++P+++ + + ++ + N+ FD + ++ Sbjct: 162 SNEPTWTQVAPALARLLSGRH--LVIFNSSFDSRMLRQTASAFGDQLSWWQEQNCLCAM 218 >gi|259501466|ref|ZP_05744368.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus iners DSM 13335] gi|302191565|ref|ZP_07267819.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus iners AB-1] gi|309803902|ref|ZP_07697986.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 11V1-d] gi|309804516|ref|ZP_07698582.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 09V1-c] gi|309806946|ref|ZP_07700929.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 03V1-b] gi|309808365|ref|ZP_07702268.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 01V1-a] gi|309809203|ref|ZP_07703075.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 2503V10-D] gi|325912750|ref|ZP_08175130.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 60-B] gi|329919994|ref|ZP_08276872.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 1401G] gi|259167134|gb|EEW51629.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus iners DSM 13335] gi|308163997|gb|EFO66260.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 11V1-d] gi|308166169|gb|EFO68386.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 09V1-c] gi|308166670|gb|EFO68866.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 03V1-b] gi|308168428|gb|EFO70543.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 01V1-a] gi|308170503|gb|EFO72524.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 2503V10-D] gi|325477964|gb|EGC81096.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 60-B] gi|328936765|gb|EGG33205.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 1401G] Length = 177 Score = 40.7 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 60/167 (35%), Gaps = 7/167 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M D ET + D + V + D +F + P +K+HGIT Sbjct: 1 MNFTAMDFET--ANRHYDSACSLALVLVRDNKII-DSFYTVINPQ-MPFDKNNIKIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +KD P+ + +AHNA+FD + L++ N I Sbjct: 57 ANDVKDAPT-MDEVWPKIRLLFQPGMLVVAHNARFDCNVMKKSLKKYNIAEPHYLTIDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + L+++ + I + H H AL DS +++ IK Sbjct: 116 ATSRALMPNLKNYRLDTVSNQLNIDLWH--HHNALSDSEACAEILIK 160 >gi|295698463|ref|YP_003603118.1| oligoribonuclease [Candidatus Riesia pediculicola USDA] gi|291157191|gb|ADD79636.1| oligoribonuclease [Candidatus Riesia pediculicola USDA] Length = 184 Score = 40.3 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M+R K I D+E TGL+ K D+IIEI Sbjct: 1 MLRDKK-NLIWIDLEMTGLNPKRDKIIEIA 29 >gi|260582817|ref|ZP_05850603.1| oligoribonuclease [Haemophilus influenzae NT127] gi|260094143|gb|EEW78045.1| oligoribonuclease [Haemophilus influenzae NT127] Length = 182 Score = 40.3 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +RIIEI Sbjct: 11 IDLEMTGLDPEKERIIEIA 29 >gi|126165254|ref|NP_001075204.1| oligoribonuclease, mitochondrial precursor [Bos taurus] gi|158512836|sp|A2VE52|ORN_BOVIN RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA exonuclease 2 homolog; AltName: Full=Small fragment nuclease; Flags: Precursor gi|126010762|gb|AAI33576.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Bos taurus] gi|296480277|gb|DAA22392.1| oligoribonuclease, mitochondrial precursor [Bos taurus] Length = 237 Score = 40.3 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66 >gi|294665061|ref|ZP_06730367.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605179|gb|EFF48524.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 194 Score = 40.3 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 13/23 (56%), Positives = 15/23 (65%) Query: 8 RKIVFDIETTGLDSKNDRIIEIG 30 R I D+E TGLD+ D IIEI Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32 >gi|301782497|ref|XP_002926662.1| PREDICTED: oligoribonuclease, mitochondrial-like [Ailuropoda melanoleuca] gi|281353930|gb|EFB29514.1| hypothetical protein PANDA_016351 [Ailuropoda melanoleuca] Length = 237 Score = 40.3 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66 >gi|312871342|ref|ZP_07731439.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 3008A-a] gi|312875261|ref|ZP_07735270.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2053A-b] gi|311089224|gb|EFQ47659.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2053A-b] gi|311093135|gb|EFQ51482.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 3008A-a] Length = 177 Score = 40.3 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 7/167 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M D ET + D + V + D +F + P +K+HGIT Sbjct: 1 MNFTAMDFET--ANRHYDSACSLALVLVRDNKII-DSFYTVINPQ-MPFDKNNIKIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +KD P+ + + +AHNA+FD + L++ N I Sbjct: 57 ANDVKDAPT-MNEVWPKIRLLFQPGMLVVAHNARFDCNVMKKSLKKYNIAEPHYLTIDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + L+++ + I + H H AL DS +++ IK Sbjct: 116 ATSRALMPNLKNYRLDTVSNQLNIDLWH--HHNALSDSEACAEILIK 160 >gi|289672571|ref|ZP_06493461.1| oligoribonuclease [Pseudomonas syringae pv. syringae FF5] Length = 178 Score = 40.3 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 14/27 (51%), Positives = 16/27 (59%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +NK I D+E TGLD D IIEI Sbjct: 2 QNKQNLIWIDLEMTGLDPDTDVIIEIA 28 >gi|88800702|ref|ZP_01116261.1| oligoribonuclease [Reinekea sp. MED297] gi|88776566|gb|EAR07782.1| oligoribonuclease [Reinekea sp. MED297] Length = 182 Score = 40.3 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ + D+I+EI Sbjct: 10 IDLEMTGLNPETDQILEIA 28 >gi|300741385|ref|ZP_07071406.1| oligoribonuclease [Rothia dentocariosa M567] gi|300380570|gb|EFJ77132.1| oligoribonuclease [Rothia dentocariosa M567] Length = 211 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPN 51 R + D E TGLD D +IEIG V D + ++ + P Sbjct: 7 RIVWIDCEMTGLDLTQDALIEIGVLVTDSDLNILGEGVELVIKPG 51 >gi|257483793|ref|ZP_05637834.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 81 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 9/75 (12%) Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNIS-----LLKRDKPLFTRITKEELDEHDKTIQTLG 232 G Q + N + + S R R ++ EL EH+ + T+ Sbjct: 1 GGQTSLSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIA 60 Query: 233 KN----AIWDRYISS 243 K A+W + + + Sbjct: 61 KASGAPALWVQMLEA 75 >gi|282856350|ref|ZP_06265629.1| putative DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens W5455] gi|282585721|gb|EFB91010.1| putative DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens W5455] Length = 351 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 53/169 (31%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTG---LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +V D+E+ G IEI AV + + + P + S L GI Sbjct: 15 YVVLDVESQGYARFCP-----IEISAVRFAPDGQCLDAYSSLVRPRVARVSRYVSDLTGI 69 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + ++ P + DF + A A+ D+ I+ Q + L+ + Sbjct: 70 TTDMVRRAPLPREVIGSLRDFIGDSVIVGHAV-AENDLPIIDHFCQELYHARLENLYVDT 128 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 N I ++ H A D + +Y + Sbjct: 129 FYWAQALFPALGTGHYNLKALAEHFVIDAQTFHRAEADCRTTARLYQIL 177 >gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1] gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1] Length = 905 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 9/18 (50%), Positives = 14/18 (77%) Query: 10 IVFDIETTGLDSKNDRII 27 + FD ETTGLD + D+++ Sbjct: 337 VAFDTETTGLDYEKDKLV 354 >gi|126666943|ref|ZP_01737919.1| oligoribonuclease [Marinobacter sp. ELB17] gi|126628659|gb|EAZ99280.1| oligoribonuclease [Marinobacter sp. ELB17] Length = 180 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M + N R + D+E TGLD + +RIIE+ Sbjct: 1 MAKGN--RLVWIDLEMTGLDPEQERIIEMA 28 >gi|16273602|ref|NP_439857.1| oligoribonuclease [Haemophilus influenzae Rd KW20] gi|260581056|ref|ZP_05848878.1| oligoribonuclease [Haemophilus influenzae RdAW] gi|1176352|sp|P45340|ORN_HAEIN RecName: Full=Oligoribonuclease gi|1574570|gb|AAC23360.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|260092296|gb|EEW76237.1| oligoribonuclease [Haemophilus influenzae RdAW] Length = 182 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +RIIEI Sbjct: 11 IDLEMTGLDPEKERIIEIA 29 >gi|84393404|ref|ZP_00992163.1| ribonuclease T [Vibrio splendidus 12B01] gi|84376013|gb|EAP92902.1| ribonuclease T [Vibrio splendidus 12B01] Length = 71 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 18/25 (72%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34 +V D+ET G +++ D ++EI A+ L Sbjct: 47 VVIDVETAGFNAETDALLEICAITL 71 >gi|289665843|ref|ZP_06487424.1| oligoribonuclease [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669068|ref|ZP_06490143.1| oligoribonuclease [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 194 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 13/23 (56%), Positives = 15/23 (65%) Query: 8 RKIVFDIETTGLDSKNDRIIEIG 30 R I D+E TGLD+ D IIEI Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32 >gi|257094889|ref|YP_003168530.1| Exonuclease RNase T and DNA polymerase III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047413|gb|ACV36601.1| Exonuclease RNase T and DNA polymerase III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 181 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 16/29 (55%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT 40 D+E TGLD + +RIIE+ V T Sbjct: 11 LDMEMTGLDPERERIIELAIVITDGQLAT 39 >gi|229591814|ref|YP_002873933.1| hypothetical protein PFLU4398 [Pseudomonas fluorescens SBW25] gi|229363680|emb|CAY51043.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 180 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 5/112 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63 ++ D+E TT G +IEIGA + + FQ F+ P R +P +L Sbjct: 4 WLIIDLEATTDEGGWPVTEMEVIEIGASLVNRQGRELDHFQRFVRPLRRPLLTPFCRQLT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 IT + + ++ F + + +A + D EL+ Sbjct: 64 HITQANMDGAAPITEVWPLFERWLGQHHARLEGWASWGDYDRAQLELEWQRH 115 >gi|330961285|gb|EGH61545.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326] Length = 180 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 5/113 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63 +V D+E TT G +IEIGA + + F+ F+ P R + +L Sbjct: 4 WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPVRRPLLTHFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 IT + ++++ +F + A + + D E + N Sbjct: 64 HITQSNIDSAAPLTAVWPQFERWLAHHRARVVGWASWGDYDRQQLEEEWRNHQ 116 >gi|262045749|ref|ZP_06018713.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US] gi|260573708|gb|EEX30264.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US] Length = 177 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 5/114 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET ++ + V + + +R F + P +++H IT Sbjct: 1 MNFIAMDFETANHYPESA--CSLALVMVRNNKIVDR-FYTVINPQ-MPFDARNIQVHQIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 E +K+ P+ + ++ + + AHNA+FD + L R + Sbjct: 57 AEDVKNAPTMAEVWPHIKE-LYQPGMLVAAHNARFDTNVMRQSLARYGIEEPHY 109 >gi|82701847|ref|YP_411413.1| oligoribonuclease [Nitrosospira multiformis ATCC 25196] gi|82409912|gb|ABB74021.1| Exonuclease [Nitrosospira multiformis ATCC 25196] Length = 184 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 M + N R I D+E +GL DRI+EI V Sbjct: 1 MTQDNG-RLIWIDMEMSGLSPDRDRILEIALV 31 >gi|300855094|ref|YP_003780078.1| putative exonuclease [Clostridium ljungdahlii DSM 13528] gi|300435209|gb|ADK14976.1| predicted exonuclease [Clostridium ljungdahlii DSM 13528] Length = 202 Score = 40.3 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 62/200 (31%), Gaps = 3/200 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I FD ETTGL N I ++ + + +K +T + P A K+HG T Sbjct: 1 MNMIFFDTETTGLRPGN--ICQLSYILVDTSAKPTKTIGKNIFFAVDYIEPSAEKVHGFT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E L S + +F N+ I + + N + + + Sbjct: 59 VETLYKLSSGMNFKDHLDEFLNDFQNADILIGHNVNFDIKFLSSEFKNCNEILNIKHT-F 117 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 ++ K+ + + + CK + R H + +S Y F Sbjct: 118 CTMNYYKNICNLKNRYNKCKAPRLEEVVRFLHIENPYINAVSKKYFNGTGNFHDARFDTT 177 Query: 187 TNEDRFFKEEKKTVPNISLL 206 + KK Sbjct: 178 ATYLLVTEGIKKGYIPKRYF 197 >gi|294625309|ref|ZP_06703946.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600378|gb|EFF44478.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 194 Score = 40.3 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 13/23 (56%), Positives = 15/23 (65%) Query: 8 RKIVFDIETTGLDSKNDRIIEIG 30 R I D+E TGLD+ D IIEI Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32 >gi|291617739|ref|YP_003520481.1| ExoX [Pantoea ananatis LMG 20103] gi|291152769|gb|ADD77353.1| ExoX [Pantoea ananatis LMG 20103] Length = 223 Score = 40.3 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 72/209 (34%), Gaps = 20/209 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL ++E+ +V+++D + P+ R S +A+ +H I++ + Sbjct: 5 VIDTETCGL---QGGVVEVASVDVIDGQIV-NPMSDLVSPD-RPISRQAMAVHRISEAMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KP + + ++AHNA FD + I T+++A Sbjct: 60 MGKPPIEEAILRYH-----GSPFYVAHNASFDRRMLPE----------MHGEWICTMTLA 104 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R+ P + +L + ++ + A + ++ + Sbjct: 105 RQLWPGIKYGNQALRHSLKLDVTPPADLHAHRALYDCYVTAALLIRIMELSGWRADEMSL 164 Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKE 219 R ++ R + L K+ Sbjct: 165 RSQPAAQRDDVLPFGKYRGQALAVVARKD 193 >gi|255528639|ref|ZP_05395399.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] gi|296185899|ref|ZP_06854305.1| exonuclease [Clostridium carboxidivorans P7] gi|255507668|gb|EET84148.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] gi|296049567|gb|EFG88995.1| exonuclease [Clostridium carboxidivorans P7] Length = 196 Score = 40.3 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEI 29 M+KI D ETTGL+ II++ Sbjct: 1 MKKIFLDTETTGLEPGQ--IIQL 21 >gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216] gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216] Length = 959 Score = 40.3 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 6/26 (23%) Query: 8 RKIV------FDIETTGLDSKNDRII 27 R++ FD ETTG D NDRI+ Sbjct: 382 REVAACPEFCFDTETTGFDIFNDRIV 407 >gi|15602765|ref|NP_245837.1| oligoribonuclease [Pasteurella multocida subsp. multocida str. Pm70] gi|13431730|sp|P57885|ORN_PASMU RecName: Full=Oligoribonuclease gi|12721214|gb|AAK02984.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 184 Score = 40.3 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 22/36 (61%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37 ++ +K I D+E TGLD +++RIIEI + + Sbjct: 1 MQLDKQNLIWIDLEMTGLDPESERIIEIATIVTDKH 36 >gi|319948005|ref|ZP_08022182.1| oligoribonuclease [Dietzia cinnamea P4] gi|319438351|gb|EFV93294.1| oligoribonuclease [Dietzia cinnamea P4] Length = 222 Score = 40.3 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 18/25 (72%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D E TGLD+ ND+++EI A+ Sbjct: 26 RIVWIDCEMTGLDTTNDKLVEIAAL 50 >gi|319776026|ref|YP_004138514.1| oligoribonuclease [Haemophilus influenzae F3047] gi|317450617|emb|CBY86837.1| oligoribonuclease [Haemophilus influenzae F3047] Length = 182 Score = 40.3 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +RIIEI Sbjct: 11 IDLEMTGLDPEKERIIEIA 29 >gi|260801283|ref|XP_002595525.1| hypothetical protein BRAFLDRAFT_69069 [Branchiostoma floridae] gi|229280772|gb|EEN51537.1| hypothetical protein BRAFLDRAFT_69069 [Branchiostoma floridae] Length = 222 Score = 40.3 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 40/138 (28%), Gaps = 6/138 (4%) Query: 9 KIVFDIETTGLDSKND----RIIEIGAVELLD-YSKTNRTFQVFLCP-NGRKNSPEALKL 62 V D E T + + IIE GAV + + F F P +L Sbjct: 10 YCVVDFEATCIKPRRADFRTEIIEFGAVIVDGSNFQMADEFHEFCRPVENPVLHQFCKEL 69 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI + + F +F F + + + D F ++ R + S Sbjct: 70 TGIQQDTVDSADPFPVVFDRFQKWLSNRGLIDSNFALVTDGIFDCNQIMRSQCEVSQMSF 129 Query: 123 IIDTLSIARRKHPSSRND 140 + K + Sbjct: 130 PSFARRFSNIKIHYMQFM 147 >gi|198274893|ref|ZP_03207425.1| hypothetical protein BACPLE_01052 [Bacteroides plebeius DSM 17135] gi|198272340|gb|EDY96609.1| hypothetical protein BACPLE_01052 [Bacteroides plebeius DSM 17135] Length = 163 Score = 40.3 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 4/139 (2%) Query: 37 YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96 + TF + P + ++HG+T E +D P F +++++ +A Sbjct: 29 NGEIADTFYSLINPEPNYYTYWCSQVHGLTREDTEDAPVFPAVWAQIEPLIEG--LPLVA 86 Query: 97 HNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156 HN FD + A + D D R + L+++ G + Sbjct: 87 HNRPFDESCLKAVFRVYQMDYPDYEFYDTLCVARRVFPELPNHQLHTVAAACG--YRLEN 144 Query: 157 KHGALLDSHLLSDVYIKMM 175 H AL D+ + + +++ Sbjct: 145 HHHALADAEACAWIAREIL 163 >gi|74214051|dbj|BAE29442.1| unnamed protein product [Mus musculus] Length = 228 Score = 40.3 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 24 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 57 >gi|330902548|gb|EGH33563.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. japonica str. M301072PT] Length = 58 Score = 40.3 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 4/52 (7%) Query: 196 EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDRYISS 243 + + R R ++ EL EH+ + T+ K +W + + + Sbjct: 1 NRASEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKACGAPPLWVQMLEA 52 >gi|166712351|ref|ZP_02243558.1| oligoribonuclease [Xanthomonas oryzae pv. oryzicola BLS256] Length = 194 Score = 40.3 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 13/23 (56%), Positives = 15/23 (65%) Query: 8 RKIVFDIETTGLDSKNDRIIEIG 30 R I D+E TGLD+ D IIEI Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32 >gi|56707099|ref|YP_170696.1| putative exonuclease [Streptomyces albulus] gi|56675918|dbj|BAD80780.1| putative exonuclease [Streptomyces albulus] Length = 288 Score = 40.3 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 9/134 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDE 68 ++ D ETT LD +IIEI ++ + P G + P+A +H +T E Sbjct: 131 VLLDTETTALD---GQIIEIAILDAATGRPL---LDTLVKPTEGVEIDPQAHAVHRLTLE 184 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + + + ++ +A++A FD G I +++ K P+ + + Sbjct: 185 DLADAPPWEKVLPKVRK--LTKDRTILAYHAAFDRGRIIDHTEQVGKRPMHLADPDNWWC 242 Query: 129 IARRKHPSSRNDLN 142 + + + + Sbjct: 243 LMQARSQFYGHGRR 256 >gi|312795486|ref|YP_004028408.1| Oligoribonuclease [Burkholderia rhizoxinica HKI 454] gi|312167261|emb|CBW74264.1| Oligoribonuclease (EC 3.1.-.-) [Burkholderia rhizoxinica HKI 454] Length = 204 Score = 40.3 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL DRIIE+ V Sbjct: 24 LDMEMTGLLPNTDRIIEVAVV 44 >gi|260588886|ref|ZP_05854799.1| exonuclease family protein [Blautia hansenii DSM 20583] gi|260540665|gb|EEX21234.1| exonuclease family protein [Blautia hansenii DSM 20583] Length = 320 Score = 40.3 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 18/57 (31%) Query: 7 MRKIVFDIETTGLDSKND-------------RIIEIGAVELLDYSKTNRTFQVFLCP 50 M IVFD+E IIEIGAV+L + +FQ + P Sbjct: 1 MNYIVFDLE-----WNQCPYGKEKENKKLPFEIIEIGAVKLDENRNIVDSFQEIIKP 52 >gi|311263942|ref|XP_003129926.1| PREDICTED: oligoribonuclease, mitochondrial-like [Sus scrofa] Length = 237 Score = 40.3 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66 >gi|46205666|ref|ZP_00048224.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum magnetotacticum MS-1] Length = 187 Score = 40.3 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTGLD DR++ V + RT+ L P G + EA +HGIT+ Sbjct: 14 LDTETTGLDVDVDRVVTAALVLREPGATHVRTW--LLDP-GVEIPAEATGIHGITNAHAT 70 Query: 72 DK 73 Sbjct: 71 AH 72 >gi|313217587|emb|CBY38652.1| unnamed protein product [Oikopleura dioica] gi|313232309|emb|CBY09418.1| unnamed protein product [Oikopleura dioica] Length = 627 Score = 40.3 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 49/177 (27%), Gaps = 11/177 (6%) Query: 9 KIVFDIETTG-----LDSKNDRIIEI-GA-VELLDYSKTNRTFQVFLCPNGRKN-SPEAL 60 + D E T + IIE V + F ++ P + + S + Sbjct: 87 FVCIDFEATCERNNTFNYP-HEIIEFPACLVHIESRKIVGE-FHSYVRPFRKAHLSDFCM 144 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLD 119 +L GIT E + P F +F +F + + + + Sbjct: 145 ELTGITQEKVDQAPYFPQVFKQFVGWLRSYGLLDQTSDGRVKISKHTPSWTLLTDSPADI 204 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + P + K+ +++ H + ++ M Sbjct: 205 CKFLAKQCEMDDIAFPYNWASRYCNIKKIFMSVYKPKYHRFTPKIEDMLEILGMEMR 261 >gi|257467741|ref|ZP_05631837.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium ulcerans ATCC 49185] gi|317062034|ref|ZP_07926519.1| exonuclease [Fusobacterium ulcerans ATCC 49185] gi|313687710|gb|EFS24545.1| exonuclease [Fusobacterium ulcerans ATCC 49185] Length = 186 Score = 40.3 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 57/189 (30%), Gaps = 22/189 (11%) Query: 7 MRKIVFDIETTGLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-------------NG 52 M+ + D ET G+ ++ +I++ G V++ + F ++ P G Sbjct: 1 MKILFVDTETGGI-TERSALIQLSGIVQI--GKEVAEEFNFYIKPFPGSEVTDEALKIQG 57 Query: 53 RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 R K I + + + F+ ++ Sbjct: 58 RTREEVETYDSEEEVFIKFMKILNKHIDKYNKEDKFLVGGYNVRFDIDVINRFLKRNGEK 117 Query: 113 INKDPLD-----PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 + P + I L + ++ N L + C +GI + + + L Sbjct: 118 YLFSYIQATTLDPLQWIAALQLLKKIPVLKDNKLETWCNHFGIELKAHDSLEDIKATKAL 177 Query: 168 SDVYIKMMV 176 + + +M Sbjct: 178 TKKMMLLMR 186 >gi|62079013|ref|NP_001014165.1| 3'-5' exoribonuclease 1 [Rattus norvegicus] gi|78098993|sp|Q5FVR4|ERI1_RAT RecName: Full=3'-5' exoribonuclease 1; AltName: Full=Histone mRNA 3'-exonuclease 1 gi|58476450|gb|AAH89828.1| Three prime histone mRNA exonuclease 1 [Rattus norvegicus] gi|149057952|gb|EDM09195.1| three prime histone mRNA exonuclease 1 [Rattus norvegicus] Length = 345 Score = 40.3 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G ++ IIE V L + + TFQ ++ P S + L G Sbjct: 128 IIDFEATCEEGNPAEFLHEIIEFPVVLLNTHSLEIEDTFQQYVRPEVNSQLSEFCIGLTG 187 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + + ++ + + + + Sbjct: 188 ITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLNIQCQLSRLKYP 247 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G+ R H L DS ++ + ++M+ Sbjct: 248 SFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAVRML 306 Query: 176 VGGSQINFG 184 G ++ Sbjct: 307 QDGCELRIN 315 >gi|315125481|ref|YP_004067484.1| oligoribonuclease [Pseudoalteromonas sp. SM9913] gi|315013994|gb|ADT67332.1| oligoribonuclease [Pseudoalteromonas sp. SM9913] Length = 181 Score = 40.3 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 19/31 (61%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 + NK I D+E TGL+ + D+I+EI V Sbjct: 1 MTINKSNLIWLDLEMTGLEPETDKILEIATV 31 >gi|171057672|ref|YP_001790021.1| oligoribonuclease [Leptothrix cholodnii SP-6] gi|170775117|gb|ACB33256.1| Exonuclease RNase T and DNA polymerase III [Leptothrix cholodnii SP-6] Length = 187 Score = 40.3 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 14/31 (45%), Positives = 19/31 (61%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 + +N + I D+E TGLD DR+IEI V Sbjct: 7 LPRNDLNLIWIDMEMTGLDPMTDRVIEIAVV 37 >gi|331083424|ref|ZP_08332536.1| hypothetical protein HMPREF0992_01460 [Lachnospiraceae bacterium 6_1_63FAA] gi|330404117|gb|EGG83665.1| hypothetical protein HMPREF0992_01460 [Lachnospiraceae bacterium 6_1_63FAA] Length = 320 Score = 40.3 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 18/57 (31%) Query: 7 MRKIVFDIETTGLDSKND-------------RIIEIGAVELLDYSKTNRTFQVFLCP 50 M IVFD+E IIEIGAV+L + +FQ + P Sbjct: 1 MNYIVFDLE-----WNQCPYGKEKENKKLPFEIIEIGAVKLDENRNIVDSFQEIIKP 52 >gi|283458223|ref|YP_003362841.1| oligoribonuclease [Rothia mucilaginosa DY-18] gi|283134256|dbj|BAI65021.1| oligoribonuclease [Rothia mucilaginosa DY-18] Length = 228 Score = 40.3 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR 53 R + D E TGLD +ND ++E+G + D + + + P Sbjct: 7 RIVWIDCEMTGLDVENDALVEVGVLVTDADLNILGSGVEFVIKPGDE 53 >gi|255326016|ref|ZP_05367104.1| oligoribonuclease [Rothia mucilaginosa ATCC 25296] gi|255296907|gb|EET76236.1| oligoribonuclease [Rothia mucilaginosa ATCC 25296] Length = 228 Score = 40.3 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR 53 R + D E TGLD +ND ++E+G + D + + + P Sbjct: 7 RIVWIDCEMTGLDVENDALVEVGVLVTDADLNILGSGVEFVIKPGDE 53 >gi|148225871|ref|NP_001088822.1| REX2, RNA exonuclease 2 homolog [Xenopus laevis] gi|126631799|gb|AAI33811.1| LOC496097 protein [Xenopus laevis] Length = 186 Score = 40.3 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 18/32 (56%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 M + R + D+E TGLD + D IIE+ + Sbjct: 1 MAKDMGQRMVWVDLEMTGLDIEKDEIIEMACL 32 >gi|302923273|ref|XP_003053640.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256734581|gb|EEU47927.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 216 Score = 40.3 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 3/45 (6%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLC-PNGR 53 D E TGLD ND I+EI + F + P R Sbjct: 23 IDCEMTGLDQDNDEILEIYCIITTGNLEILDEEGFHAIIHWPQSR 67 >gi|119961384|ref|YP_948135.1| oligoribonuclease [Arthrobacter aurescens TC1] gi|119948243|gb|ABM07154.1| putative oligoribonuclease [Arthrobacter aurescens TC1] Length = 211 Score = 40.3 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 39/152 (25%), Gaps = 10/152 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D E TGLD ND +IE+ A V + + V + P+ + + Sbjct: 7 RIVWIDCEMTGLDLTNDALIEVAALVTDSELNILGDGVDVVIKPDDAALEQMNDFVRDMH 66 Query: 67 DEFLKDKPSFSSIFS---------EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + + + N+ A + Sbjct: 67 TRSKLLDELPHGKTMAEAEAQVLEYIEKWVPDPRKAPLGGNSVGTDRMFLARDMPNIVEH 126 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149 L I + + R S K G Sbjct: 127 LHYRVIDVSTIKELSRRWFPRAYFQSPAKHGG 158 >gi|327394158|dbj|BAK11580.1| exodeoxyribonuclease X exoX [Pantoea ananatis AJ13355] Length = 223 Score = 40.3 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 72/209 (34%), Gaps = 20/209 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL ++E+ +V+++D + P+ R S +A+ +H IT+ + Sbjct: 5 VIDTETCGL---QGGVVEVASVDVIDGQIV-NPMSDLVSPD-RPISRQAMAVHRITEAMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KP + + ++AHNA FD + I T+++A Sbjct: 60 MGKPPIEEAILRYH-----GSPFYVAHNASFDRRMLPE----------MHGEWICTMTLA 104 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R+ P + +L + ++ + A + ++ + Sbjct: 105 RQLWPGIKYGNQALRHSLKLDVTPPADLHAHRALYDCYVTAALLIRIMDLSGWRADEMSL 164 Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKE 219 R ++ R + L K+ Sbjct: 165 RSQPAAQRDDVLPFGKYRGQALAVVARKD 193 >gi|302848573|ref|XP_002955818.1| hypothetical protein VOLCADRAFT_66302 [Volvox carteri f. nagariensis] gi|300258786|gb|EFJ43019.1| hypothetical protein VOLCADRAFT_66302 [Volvox carteri f. nagariensis] Length = 196 Score = 40.3 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37 D+E TGLD + D IIE+ + Sbjct: 22 VDLEMTGLDIERDTIIEVACIITDGD 47 >gi|254509115|ref|ZP_05121216.1| oligoribonuclease [Vibrio parahaemolyticus 16] gi|219547953|gb|EED24977.1| oligoribonuclease [Vibrio parahaemolyticus 16] Length = 181 Score = 40.3 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 10/18 (55%), Positives = 13/18 (72%) Query: 13 DIETTGLDSKNDRIIEIG 30 D+E TGLD + +IIEI Sbjct: 12 DLEMTGLDPETHKIIEIA 29 >gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] Length = 662 Score = 40.3 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 3/25 (12%) Query: 10 IV-FDIETTGLDSKNDRI--IEIGA 31 +V DIETTGLD I I+I A Sbjct: 68 VVGLDIETTGLDPHTSEISLIQIAA 92 >gi|288926311|ref|ZP_06420235.1| exonuclease [Prevotella buccae D17] gi|288336916|gb|EFC75278.1| exonuclease [Prevotella buccae D17] Length = 163 Score = 40.3 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 2/127 (1%) Query: 40 TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 +F + P + ++HG+T + P F ++ + + +AHN+ Sbjct: 32 IADSFYSLIQPESNYYTYWCTRVHGLTQADTETAPVFPHVWERITELIGD--LPLVAHNS 89 Query: 100 KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 FD + A + D D + R + L ++ G ++ Sbjct: 90 PFDESCLKAVFRCYQMDYPDYRFYDTLRTARRVFPHLPNHQLQTVAAACGYDLTCHHHAL 149 Query: 160 ALLDSHL 166 A ++ Sbjct: 150 ADAEACA 156 >gi|269977856|ref|ZP_06184812.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1] gi|306818377|ref|ZP_07452103.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307701469|ref|ZP_07638488.1| exonuclease [Mobiluncus mulieris FB024-16] gi|269933936|gb|EEZ90514.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1] gi|304648886|gb|EFM46185.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307613379|gb|EFN92629.1| exonuclease [Mobiluncus mulieris FB024-16] Length = 258 Score = 40.3 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 FD ETTG+ + DRI + + T + + P Sbjct: 37 FDTETTGVWVRRDRIATASLIRRVGGEDT--AYNWVINPG 74 >gi|227875110|ref|ZP_03993255.1| DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35243] gi|227844388|gb|EEJ54552.1| DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35243] Length = 258 Score = 40.3 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 FD ETTG+ + DRI + + T + + P Sbjct: 37 FDTETTGVWVRRDRIATASLIRRVGGEDT--AYNWVINPG 74 >gi|332142294|ref|YP_004428032.1| Endodeoxyribonuclease [Alteromonas macleodii str. 'Deep ecotype'] gi|327552316|gb|AEA99034.1| Endodeoxyribonuclease [Alteromonas macleodii str. 'Deep ecotype'] Length = 194 Score = 40.3 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 10/91 (10%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQ------VFLCPNGR 53 MIR KM+ ++ DIET G + I+ IGAV + +T RTF + Sbjct: 1 MIR--KMKDVMIDIETVGTQPYS-AIVSIGAVFFDPFTGETGRTFYDVISLDSCIKHGLV 57 Query: 54 KNSPEALKLHGITDEFLKDKPSFSSIFSEFW 84 + E K F + Sbjct: 58 MDPSTIQWWIKQDKEAAKVFFGFKRNLPDVM 88 >gi|21242783|ref|NP_642365.1| oligoribonuclease [Xanthomonas axonopodis pv. citri str. 306] gi|23821917|sp|Q8PKW8|ORN_XANAC RecName: Full=Oligoribonuclease gi|21108265|gb|AAM36901.1| oligoribonuclease [Xanthomonas axonopodis pv. citri str. 306] Length = 194 Score = 40.3 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 13/23 (56%), Positives = 15/23 (65%) Query: 8 RKIVFDIETTGLDSKNDRIIEIG 30 R I D+E TGLD+ D IIEI Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32 >gi|255306398|ref|ZP_05350569.1| putative exonuclease [Clostridium difficile ATCC 43255] Length = 1039 Score = 40.3 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 30/251 (11%), Positives = 73/251 (29%), Gaps = 27/251 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIE +GLD N I+E+GAV++ D+ T++ + + Sbjct: 12 VFLDIEVSGLDCLNSEILEVGAVKVKDWKIY--TYESLIKNKFEVPIEVFSVCKNLDKND 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ + +F + + K + + L +I Sbjct: 70 LEIANEIELVEDRLVNFVEDSFIICHDLSLKKKFLEYHMPKLKNKFIDLIELAVILEPYH 129 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT-- 187 +N L + + + + + LL ++F + Sbjct: 130 KDYSLEYLKNTLTNCNSKVENRALSDAIDIINIVNCLLVKFNNYEKTTLEPLSFKINSYL 189 Query: 188 --------------------NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 + +++ + + K+ + +I EE +++ Sbjct: 190 KKFNLPTWEWSKFLEEANYDLSNNINIKKEYNIFDSKEEKKKERETLKILNEEEKNYEEL 249 Query: 228 IQTLGKNAIWD 238 ++ IW+ Sbjct: 250 LKY---KTIWE 257 >gi|325921805|ref|ZP_08183622.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas gardneri ATCC 19865] gi|325547682|gb|EGD18719.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas gardneri ATCC 19865] Length = 212 Score = 40.3 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 13/23 (56%), Positives = 15/23 (65%) Query: 8 RKIVFDIETTGLDSKNDRIIEIG 30 R I D+E TGLD+ D IIEI Sbjct: 28 RLIWIDLEMTGLDTDRDSIIEIA 50 >gi|74152556|dbj|BAE42568.1| unnamed protein product [Mus musculus] Length = 224 Score = 40.3 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 20 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 53 >gi|94311510|ref|YP_584720.1| oligoribonuclease [Cupriavidus metallidurans CH34] gi|93355362|gb|ABF09451.1| oligoribonuclease [Cupriavidus metallidurans CH34] Length = 205 Score = 40.3 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL DRIIE+ V Sbjct: 18 LDMEMTGLQPDTDRIIEVAVV 38 >gi|149578823|ref|XP_001514027.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus] Length = 350 Score = 40.3 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 34 MAAGESMGQRMVWVDLEMTGLDIEKDQIIEMACL 67 >gi|92113396|ref|YP_573324.1| oligoribonuclease [Chromohalobacter salexigens DSM 3043] gi|91796486|gb|ABE58625.1| Exonuclease [Chromohalobacter salexigens DSM 3043] Length = 187 Score = 40.3 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 16/26 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37 D+E TGLD + +RIIE+ + + Sbjct: 17 IDLEMTGLDPQRERIIEVATLITDND 42 >gi|58581832|ref|YP_200848.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623734|ref|YP_451106.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576613|ref|YP_001913542.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae PXO99A] gi|81311869|sp|Q5H0Q8|ORN_XANOR RecName: Full=Oligoribonuclease gi|123522125|sp|Q2P3P5|ORN_XANOM RecName: Full=Oligoribonuclease gi|58426426|gb|AAW75463.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367674|dbj|BAE68832.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521065|gb|ACD59010.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae PXO99A] Length = 194 Score = 40.3 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 13/23 (56%), Positives = 15/23 (65%) Query: 8 RKIVFDIETTGLDSKNDRIIEIG 30 R I D+E TGLD+ D IIEI Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32 >gi|45476845|sp|Q7TMF2|ERI1_MOUSE RecName: Full=3'-5' exoribonuclease 1; AltName: Full=3'-5' exonuclease ERI1; AltName: Full=Eri-1 homolog; AltName: Full=Histone mRNA 3'-exonuclease 1 gi|28204890|gb|AAH46412.1| Exoribonuclease 1 [Mus musculus] gi|74179153|dbj|BAE42771.1| unnamed protein product [Mus musculus] gi|148703505|gb|EDL35452.1| three prime histone mRNA exonuclease 1 [Mus musculus] Length = 345 Score = 40.3 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G ++ IIE V L ++ + TFQ ++ P S + L G Sbjct: 128 IIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNAQLSEFCIGLTG 187 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + + ++ + + + + + Sbjct: 188 ITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLSRLKHP 247 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G+ R H L DS ++ + ++M+ Sbjct: 248 AFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAVRML 306 Query: 176 VGGSQINFG 184 G ++ Sbjct: 307 QDGCELRIN 315 >gi|256832144|ref|YP_003160871.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans DSM 20603] gi|256685675|gb|ACV08568.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans DSM 20603] Length = 222 Score = 40.3 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Query: 10 IV-FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51 IV D E TGLD D +IEI A+ + + + + + P Sbjct: 10 IVWIDCEMTGLDITQDALIEIAAIVTDSELNPLDEGIDLVIKPP 53 >gi|163749340|ref|ZP_02156589.1| oligoribonuclease [Shewanella benthica KT99] gi|161331059|gb|EDQ01985.1| oligoribonuclease [Shewanella benthica KT99] Length = 181 Score = 40.3 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + D++IEI Sbjct: 11 VDLEMTGLDPETDKVIEIA 29 >gi|126172800|ref|YP_001048949.1| oligoribonuclease [Shewanella baltica OS155] gi|153002280|ref|YP_001367961.1| oligoribonuclease [Shewanella baltica OS185] gi|160877004|ref|YP_001556320.1| oligoribonuclease [Shewanella baltica OS195] gi|304410908|ref|ZP_07392525.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS183] gi|307304921|ref|ZP_07584671.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica BA175] gi|166216585|sp|A3D017|ORN_SHEB5 RecName: Full=Oligoribonuclease gi|166216586|sp|A6WSV9|ORN_SHEB8 RecName: Full=Oligoribonuclease gi|125996005|gb|ABN60080.1| Exonuclease, RNase T and DNA polymerase III [Shewanella baltica OS155] gi|151366898|gb|ABS09898.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS185] gi|160862526|gb|ABX51060.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS195] gi|304350805|gb|EFM15206.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS183] gi|306912323|gb|EFN42747.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica BA175] gi|315269207|gb|ADT96060.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS678] Length = 181 Score = 40.3 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ DRIIEI Sbjct: 11 IDLEMTGLEPDVDRIIEIA 29 >gi|213162324|ref|ZP_03348034.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 73 Score = 40.3 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 5/74 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFW 84 DKP + ++ Sbjct: 59 ADKPWIEDVIPLYY 72 >gi|217974867|ref|YP_002359618.1| oligoribonuclease [Shewanella baltica OS223] gi|217500002|gb|ACK48195.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS223] Length = 181 Score = 40.3 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ DRIIEI Sbjct: 11 IDLEMTGLEPDVDRIIEIA 29 >gi|260437597|ref|ZP_05791413.1| exonuclease family protein [Butyrivibrio crossotus DSM 2876] gi|292809950|gb|EFF69155.1| exonuclease family protein [Butyrivibrio crossotus DSM 2876] Length = 327 Score = 39.9 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 52/184 (28%), Gaps = 21/184 (11%) Query: 7 MRKIVFDIETTGLDSKND-------------RIIEIGAVELLDYSKTNRTFQVFLCPNGR 53 M IVFD+E IIEIGAV+L + TF + P Sbjct: 1 MNYIVFDLE-----WNQCPDGKEKEIKDMPFEIIEIGAVKLDSQRRVIDTFAKNIAPGVY 55 Query: 54 K--NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAEL 110 + + + E ++ F EF ++ + ++ Sbjct: 56 QTLHPVMQDLIGTTMGELVEKGVPFPQAVKEFMEWCGDDYIFCTWGCMDLTELQRNCDYY 115 Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + P+ S + + + + + H A D+ + + Sbjct: 116 KINLNLPMPLIYYDLQKSYSICYDDGKKRSSLETVTADKNIVQNEAFHSAFADAEYTAKI 175 Query: 171 YIKM 174 + M Sbjct: 176 FGLM 179 >gi|239621759|ref|ZP_04664790.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514950|gb|EEQ54817.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 189 Score = 39.9 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 12 FDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 DIETTG D ++D ++EIG + ++ R ++ + P+ H + Sbjct: 11 VDIETTGTDPRHDLMLEIGLRCTSMDAKTEYAR-YESIIKPDILPTDRSFAYAHRMH 66 >gi|119486052|ref|ZP_01620114.1| Exonuclease [Lyngbya sp. PCC 8106] gi|119456827|gb|EAW37955.1| Exonuclease [Lyngbya sp. PCC 8106] Length = 191 Score = 39.9 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 58/178 (32%), Gaps = 9/178 (5%) Query: 11 VFDIETTGLDSKN-----DRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKN-SPEALKLH 63 + D+E T D IIEIGAV + T+ FQ F+ P + +L Sbjct: 11 IIDLEATCCDQHTILRSEMEIIEIGAVMVETKKLTSVNEFQTFIKPIRHPILTKFCQQLT 70 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINKDPLDPS 121 IT ++ P + ++ ++ + + + +D + + Q + Sbjct: 71 SITQAQVEQAPHYPEAIKNLKNWLSQYSDSHLIWGSWGDYDRRQFDQDSQFHHVSFPIGY 130 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I+ + + + + H + D+ ++ + ++ Sbjct: 131 PHINLKKMFSTSQGLKGRYGMADALKLANIPLEGTHHRGIDDTRNIAKLMPYILGVKK 188 >gi|90407113|ref|ZP_01215302.1| oligoribonuclease [Psychromonas sp. CNPT3] gi|90311835|gb|EAS39931.1| oligoribonuclease [Psychromonas sp. CNPT3] Length = 179 Score = 39.9 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 16/26 (61%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIG 30 NK I D+E TGL+ + D IIEI Sbjct: 2 NKNNLIWIDLEMTGLNPETDLIIEIA 27 >gi|88704503|ref|ZP_01102217.1| oligoribonuclease [Congregibacter litoralis KT71] gi|88701554|gb|EAQ98659.1| oligoribonuclease [Congregibacter litoralis KT71] Length = 188 Score = 39.9 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD DR+IEI Sbjct: 14 VDMEMTGLDPDGDRVIEIA 32 >gi|323486817|ref|ZP_08092135.1| exonuclease [Clostridium symbiosum WAL-14163] gi|323694961|ref|ZP_08109111.1| hypothetical protein HMPREF9475_03975 [Clostridium symbiosum WAL-14673] gi|323399830|gb|EGA92210.1| exonuclease [Clostridium symbiosum WAL-14163] gi|323501051|gb|EGB16963.1| hypothetical protein HMPREF9475_03975 [Clostridium symbiosum WAL-14673] Length = 335 Score = 39.9 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 50/176 (28%), Gaps = 10/176 (5%) Query: 9 KIVFDIETT----GLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 IV D+E G D DR IIEIGAV+L + F+ + P + + Sbjct: 4 YIVLDLEWNQSPLGKDGSMDRLPFEIIEIGAVKLNASLQIISEFRRLIRPRVYRQMHFKI 63 Query: 61 KLHGITDEF--LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + F EF + + + N ++ Sbjct: 64 SEVTHMSMDELNMEGEEFGKAMEEFLAWCGDDYKFCTWGSMDLTELQRNMVYHGLDIPFR 123 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P D I + D R H AL D++ + +M Sbjct: 124 MPLLYYDLQKIYGLIRGDKQKDSLDTVVEELGIAEDRPFHRALDDAYYTGRIMAEM 179 >gi|207725335|ref|YP_002255731.1| oligoribonuclease protein [Ralstonia solanacearum MolK2] gi|206590571|emb|CAQ37533.1| oligoribonuclease protein [Ralstonia solanacearum MolK2] Length = 185 Score = 39.9 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 11/18 (61%), Positives = 13/18 (72%) Query: 15 ETTGLDSKNDRIIEIGAV 32 E TGL +NDRIIE+ V Sbjct: 2 EMTGLSPENDRIIEVAMV 19 >gi|72162668|ref|YP_290325.1| oligoribonuclease [Thermobifida fusca YX] gi|71916400|gb|AAZ56302.1| exonuclease [Thermobifida fusca YX] Length = 213 Score = 39.9 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 39/149 (26%), Gaps = 12/149 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEALKLHGITD-- 67 D E TGLD K D +IE+ + + D + V + P + + Sbjct: 8 IDCEMTGLDLKKDALIEVACL-ITDGELNQLDEGINVVIKPPQEALDQMGEFVTQMHTTS 66 Query: 68 -------EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + + + + E + N+ A + L Sbjct: 67 GLLAELENGVTLAEAEQLVLDHIRRYIPEPKKVPLCGNSIATDRAFLARDMPRVDEHLHY 126 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYG 149 + + + R S K G Sbjct: 127 RMVDVSSVKELLRRWYPRVYFASPEKHGG 155 >gi|149716526|ref|XP_001502237.1| PREDICTED: similar to Oligoribonuclease, mitochondrial precursor (Small fragment nuclease) (RNA exonuclease 2 homolog) [Equus caballus] Length = 237 Score = 39.9 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66 >gi|119920012|ref|XP_001253741.1| PREDICTED: three prime histone mRNA exonuclease 1-like [Bos taurus] gi|297492734|ref|XP_002699843.1| PREDICTED: three prime histone mRNA exonuclease 1-like [Bos taurus] gi|296471031|gb|DAA13146.1| three prime histone mRNA exonuclease 1-like [Bos taurus] Length = 370 Score = 39.9 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G + IIE V L ++ + TFQ ++ P S + L G Sbjct: 132 IIDFEATCEEGNPPEFIHEIIEFSVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINLTG 191 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + + D+ + + + + + Sbjct: 192 ITQDQVDKADTFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRLKYP 251 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G+ H L DS ++ + ++M+ Sbjct: 252 PFAKKWISIQKSYGNFYKVPRSQIKLTIMLEKLGMDYDGWP-HSGLDDSKNVARIAVRML 310 Query: 176 VGGSQINFG 184 G ++ Sbjct: 311 QDGCELRVN 319 >gi|332536010|ref|ZP_08411688.1| oligoribonuclease [Pseudoalteromonas haloplanktis ANT/505] gi|332034620|gb|EGI71185.1| oligoribonuclease [Pseudoalteromonas haloplanktis ANT/505] Length = 181 Score = 39.9 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 19/31 (61%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 + NK I D+E TGL+ + D+I+EI V Sbjct: 1 MTINKSNLIWLDLEMTGLEPETDKILEIATV 31 >gi|320586054|gb|EFW98733.1| RNA exonuclease [Grosmannia clavigera kw1407] Length = 205 Score = 39.9 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 15/26 (57%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37 D E TGLD +D+I+EI + + Sbjct: 11 IDCEMTGLDPDSDQILEIYCLVTDGH 36 >gi|295401361|ref|ZP_06811332.1| Exonuclease RNase T and DNA polymerase III [Geobacillus thermoglucosidasius C56-YS93] gi|312109679|ref|YP_003987995.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp. Y4.1MC1] gi|294976576|gb|EFG52183.1| Exonuclease RNase T and DNA polymerase III [Geobacillus thermoglucosidasius C56-YS93] gi|311214780|gb|ADP73384.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp. Y4.1MC1] Length = 207 Score = 39.9 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 48/169 (28%), Gaps = 10/169 (5%) Query: 9 KIVFDIE-T---TGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + D E T T ++ K IIE+G V +++ ++ F ++ P P Sbjct: 7 YLFLDFEFTMPETKMEPKGFFPEIIEVGLVVVVNDEICDQ-FSSYVKPTRF---PVLTNR 62 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 +++ + F E + + + + + + L Sbjct: 63 CKSFLNITQEQINQGMSFHELVALLCKYDRSCPSTVVTWGSMDMKVLKENCKAANLPFPF 122 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + +A N ++ ++ + A Y Sbjct: 123 TGEHRDLAMEYKLFFGNKNHTGLRKAIQEYGNEGVGKAHCALDDAFTTY 171 >gi|21684668|gb|AAM09079.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps] Length = 157 Score = 39.9 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 1/146 (0%) Query: 37 YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96 T F ++ P + + A +HG+ DEFL +P+F +I F Sbjct: 4 GRITGNYFHAYINP-LQSMTRGAQAVHGLRDEFLATQPTFCAIAQGLLFFLCRSTLVGHN 62 Query: 97 HNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156 + + +IDT+ ++ R L+S C G+ R+ Sbjct: 63 LSFDLNFLDAGLASAGFMPTARYCHGVIDTMPHLAQRGSRRRFSLDSCCDMLGVRREDRA 122 Query: 157 KHGALLDSHLLSDVYIKMMVGGSQIN 182 +HGAL D+ LL++ ++ I Sbjct: 123 RHGALEDAVLLAEAFVVAKRTQPPIG 148 >gi|104773741|ref|YP_618721.1| putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513740|ref|YP_812646.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|300813077|ref|ZP_07093455.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313123346|ref|YP_004033605.1| DNA polymerase iii, epsilon subunit related 3'-5' exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|103422822|emb|CAI97474.1| Putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093055|gb|ABJ58208.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|300495918|gb|EFK31062.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312279909|gb|ADQ60628.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325125397|gb|ADY84727.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp. bulgaricus 2038] gi|325684506|gb|EGD26670.1| exonuclease [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 178 Score = 39.9 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 51/163 (31%), Gaps = 9/163 (5%) Query: 6 KMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 M + D ET + + V + + +R F + P + +K+H Sbjct: 1 MMNFVAMDFET----ANQHPASACSLALVLVRESKIIDR-FYTVINPQMA-FDAQQVKVH 54 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 IT E + P+ + + AHNA+FD + L R + Sbjct: 55 DITAEDVAGAPT-MAEVWPKIQPLFQPGMLVAAHNARFDCNVMKQSLARYGIAEPHYLVL 113 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + LN++ G+ + H + ++ Sbjct: 114 DSLKVSRELEPGLDNYQLNTVSDLLGVELWHHHNALSDSEACA 156 >gi|297571869|ref|YP_003697643.1| exonuclease RNase T and DNA polymerase III [Arcanobacterium haemolyticum DSM 20595] gi|296932216|gb|ADH93024.1| Exonuclease RNase T and DNA polymerase III [Arcanobacterium haemolyticum DSM 20595] Length = 228 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 10 IV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44 IV FD ETTG+D +R++ V + + T + Sbjct: 7 IVGFDTETTGVDPTRERLVTASVVVVEEDGVTRHYW 42 >gi|260783156|ref|XP_002586643.1| hypothetical protein BRAFLDRAFT_105672 [Branchiostoma floridae] gi|229271764|gb|EEN42654.1| hypothetical protein BRAFLDRAFT_105672 [Branchiostoma floridae] Length = 767 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 21/210 (10%), Positives = 54/210 (25%), Gaps = 15/210 (7%) Query: 51 NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 K + F+ +K + F + + + ++ + + L Sbjct: 437 ENEYVHTPDEKYDALMHHFVYNKTWLLTKFPSETKYISIIRHPFGHLKSQMNYFTLAKVL 496 Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + + D R + + D + Sbjct: 497 KIKGHGNAVKVFLHDPWQHRNRSETFFPHVNITWDGTRNPMTFDMGWPAERADEEEEARE 556 Query: 171 YIKMMVGGSQINFGFKTNEDRFFK------EEKKTVPNISLLKRDKPLFTR---ITKEEL 221 YI + + + ++ + + S +K +P + T EEL Sbjct: 557 YISQLDAEFTLVMILEHLDESVVLLRRLMCWGLRDILLYSKVKNSRPYPYKNYVATPEEL 616 Query: 222 DEHDKT--IQTLG----KNAIWDRYISSNQ 245 + H + + N++W + + Q Sbjct: 617 ENHRNWSAVDYMLYNTFNNSLWRKINAQGQ 646 >gi|283769033|ref|ZP_06341939.1| exonuclease [Bulleidia extructa W1219] gi|283104390|gb|EFC05767.1| exonuclease [Bulleidia extructa W1219] Length = 186 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 44/159 (27%), Gaps = 3/159 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + D+ET D ++ + IG L + F + P N E Sbjct: 3 RVVAVDVETASSDHRS--MCAIGLSVLENGVL-EEAFYSLIKPAANANHFEYFNTKVHGI 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + ++ +AHNA FDV I + Sbjct: 60 HPKDVQDAPTLPEVYPTIKSLLESGIVVAHNAVFDVSVIKNCCLNTGCPVPKVTYFDSVP 119 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 R + L+++ + I + H Sbjct: 120 LSRRAFPLLVNHKLDTVARYLKIPLDHHHAGSDAYACLA 158 >gi|259502770|ref|ZP_05745672.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus antri DSM 16041] gi|259169273|gb|EEW53768.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus antri DSM 16041] Length = 178 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 7/166 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET K + + + F + P +++HGI Sbjct: 1 MNFIAMDFET--ASGKRYSACSLALTIVRNNQ-IADEFYTLINPQTPFF-WRNVQIHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + P+F E F + IAHN +FD G + + L+ +P + Sbjct: 57 ERDVANAPTF-PEVWEHIKGFYTPDKLVIAHNNRFDNGVLKSTLEHYGIEPPAYQTLDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +S R S LN++C I + H H AL D+ +++ + Sbjct: 116 VSSRRLLPGLSNYKLNTVCAALNIDLHH--HHNALDDAQACANILL 159 >gi|146281584|ref|YP_001171737.1| ribonuclease T [Pseudomonas stutzeri A1501] gi|145569789|gb|ABP78895.1| ribonuclease T [Pseudomonas stutzeri A1501] Length = 203 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 59/186 (31%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP---NGRKNSPEALKL 62 +V D+E G + D ++EI AV + T + P + + Sbjct: 11 VVIDVECGGFNCATDALLEIAAVTIGMDEQGLLYPQDTLFYRVEPFAGANIEPAALEFTG 70 Query: 63 HGITDEFLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + P + + A + HN+ FD+GF+NA + R Sbjct: 71 IKLDHPLRMAVPEQQALTDIFRSVRKAVKSAGCKRAILVGHNSSFDLGFLNAAIARCEIK 130 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI R H A D+ ++++ ++ Sbjct: 131 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 190 Query: 177 GGSQIN 182 ++ Sbjct: 191 RWKEMG 196 >gi|84488969|ref|YP_447201.1| 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091] gi|84372288|gb|ABC56558.1| predicted 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091] Length = 445 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 11/121 (9%) Query: 7 MR-KIVFDIETTGLDS--KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 MR +V D+E + + + I IG + + + + R + + P +++ Sbjct: 1 MRDYVVMDLE----NPNFRQNSICAIGVMLIRNNNVVERKY-SLINPED-TFDNINIQIT 54 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 I +K P+ +SE + N + HN +D+ + LQR + + + + Sbjct: 55 KIAPHMIKQSPTLPEYWSEISSWL--SNNVIVGHNITYDLRVLTKSLQRYDLEVPEFNYC 112 Query: 124 I 124 Sbjct: 113 C 113 >gi|77359452|ref|YP_339027.1| oligoribonuclease [Pseudoalteromonas haloplanktis TAC125] gi|123587965|sp|Q3IG97|ORN_PSEHT RecName: Full=Oligoribonuclease gi|76874363|emb|CAI85584.1| oligoribonuclease [Pseudoalteromonas haloplanktis TAC125] Length = 181 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 19/31 (61%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 + NK I D+E TGL+ + D+I+EI V Sbjct: 1 MNINKSNLIWLDLEMTGLEPETDKILEIATV 31 >gi|37200012|dbj|BAC95841.1| oligoribonuclease [Vibrio vulnificus YJ016] Length = 227 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD +IIEI ++ Sbjct: 57 IDLEMTGLDPDVHKIIEIASI 77 >gi|120597485|ref|YP_962059.1| oligoribonuclease [Shewanella sp. W3-18-1] gi|146294374|ref|YP_001184798.1| oligoribonuclease [Shewanella putrefaciens CN-32] gi|166216588|sp|A4YAL6|ORN_SHEPC RecName: Full=Oligoribonuclease gi|166216590|sp|A1RFR0|ORN_SHESW RecName: Full=Oligoribonuclease gi|120557578|gb|ABM23505.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. W3-18-1] gi|145566064|gb|ABP76999.1| Exonuclease, RNase T and DNA polymerase III [Shewanella putrefaciens CN-32] gi|319427729|gb|ADV55803.1| Exonuclease RNase T and DNA polymerase III [Shewanella putrefaciens 200] Length = 181 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ DRIIEI Sbjct: 11 IDLEMTGLEPDVDRIIEIA 29 >gi|161484692|ref|NP_779012.2| exonuclease I [Xylella fastidiosa Temecula1] gi|182681388|ref|YP_001829548.1| exonuclease I [Xylella fastidiosa M23] gi|182631498|gb|ACB92274.1| Exodeoxyribonuclease I [Xylella fastidiosa M23] gi|307579833|gb|ADN63802.1| exonuclease I [Xylella fastidiosa subsp. fastidiosa GB514] Length = 478 Score = 39.9 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 41/154 (26%), Gaps = 4/154 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGIT 66 + +D+ET G D + RI + AV + + P P A + GIT Sbjct: 5 FLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGIT 64 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + + Q + F + ++ + Sbjct: 65 PQHAQREGINEAAAFAHIAMQMTQPHTCSL--GYNTLRFDDEFIRYGLFRHFYDPYEREW 122 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 + R L + GI R Sbjct: 123 RNGNSRWDLLDMLRLMHAVRPEGIHWPTREDGAP 156 >gi|227497246|ref|ZP_03927486.1| DNA polymerase III subunit epsilon [Actinomyces urogenitalis DSM 15434] gi|226833294|gb|EEH65677.1| DNA polymerase III subunit epsilon [Actinomyces urogenitalis DSM 15434] Length = 249 Score = 39.9 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 FD ETTG+D DR++ V Sbjct: 20 FDTETTGVDPSQDRLVTAALV 40 >gi|113461243|ref|YP_719312.1| oligoribonuclease [Haemophilus somnus 129PT] gi|112823286|gb|ABI25375.1| oligoribonuclease [Haemophilus somnus 129PT] Length = 184 Score = 39.9 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 ++ +K I D+E TGLD +RIIEI Sbjct: 1 MQLDKQNLIWIDLEMTGLDPDKERIIEIA 29 >gi|295095557|emb|CBK84647.1| Exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 220 Score = 39.9 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 17/167 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET L I+E+ +V+++D + P+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCDL---QGGIVEVASVDVIDGKIV-NPMSHLVRPD-RPISAQAMAIHRITESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I + ++AHNA FD + + Sbjct: 59 ADKPWIEEII-----PLYHGSQWYVAHNASFDRRVLPEMPGEWICT-------MKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S L K T H AL D ++ + + I +M Sbjct: 107 WPGIKYSNMALYKSRKLSVRTPEGLHHHRALYDCYITAALLIDIMNT 153 >gi|157963361|ref|YP_001503395.1| oligoribonuclease [Shewanella pealeana ATCC 700345] gi|157848361|gb|ABV88860.1| Exonuclease RNase T and DNA polymerase III [Shewanella pealeana ATCC 700345] Length = 181 Score = 39.9 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ DRIIEI Sbjct: 11 VDLEMTGLEPDVDRIIEIA 29 >gi|238020295|ref|ZP_04600721.1| hypothetical protein GCWU000324_00173 [Kingella oralis ATCC 51147] gi|237867275|gb|EEP68281.1| hypothetical protein GCWU000324_00173 [Kingella oralis ATCC 51147] Length = 192 Score = 39.9 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 9/21 (42%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + D+IIE+ + Sbjct: 10 LDMEMTGLNPETDKIIEVAMI 30 >gi|257066416|ref|YP_003152672.1| exonuclease-like protein [Anaerococcus prevotii DSM 20548] gi|256798296|gb|ACV28951.1| exonuclease-like protein [Anaerococcus prevotii DSM 20548] Length = 301 Score = 39.9 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 21/30 (70%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYS 38 +I+ DIETTGLDS D ++ +G +E +D Sbjct: 17 EIILDIETTGLDSSIDSLVLLGIIEKIDGK 46 >gi|170717217|ref|YP_001784337.1| oligoribonuclease [Haemophilus somnus 2336] gi|168825346|gb|ACA30717.1| Exonuclease RNase T and DNA polymerase III [Haemophilus somnus 2336] Length = 184 Score = 39.9 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 18/29 (62%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 ++ +K I D+E TGLD +RIIEI Sbjct: 1 MQLDKQNLIWIDLEMTGLDPDKERIIEIA 29 >gi|291383854|ref|XP_002708465.1| PREDICTED: small fragment nuclease [Oryctolagus cuniculus] Length = 237 Score = 39.9 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 66 >gi|218461184|ref|ZP_03501275.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli Kim 5] Length = 240 Score = 39.9 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 5/149 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + I D ET + + +G + + R + + P + S + +HGI Sbjct: 46 KTIAIDFET--ANEQRGSACSVGLAWIEEGRVI-RVEERLIRPREMRFSGMNIAIHGIRP 102 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++D P F + EF D F AHNA FD A L + + + + Sbjct: 103 EDVEDAPEFPEVMDEFHDDFRGATMI--AHNAAFDFSVWRASLDLYRQSYPELTYLCSLK 160 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRS 156 R + LN + + G+ H + Sbjct: 161 MAQRIWPHFLSHRLNLIAEHLGLRFMHHN 189 >gi|194476704|ref|YP_002048883.1| possible DNA polymerase III, epsilon subunit [Paulinella chromatophora] gi|171191711|gb|ACB42673.1| possible DNA polymerase III, epsilon subunit [Paulinella chromatophora] Length = 302 Score = 39.9 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 15/30 (50%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDY 37 + ++ D ETT L + IEIGA+ Sbjct: 77 KLLILDTETTSLSPTDGNCIEIGAILFHLR 106 >gi|146278808|ref|YP_001168967.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025] gi|145557049|gb|ABP71662.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025] Length = 204 Score = 39.9 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%) Query: 8 RKIVFDIETTGLDSKNDR--IIEIGA 31 R + D ET GLD + DR ++++ A Sbjct: 18 RVVAIDTETMGLDPRRDRLCVVQLSA 43 >gi|325266418|ref|ZP_08133095.1| oligoribonuclease [Kingella denitrificans ATCC 33394] gi|324981861|gb|EGC17496.1| oligoribonuclease [Kingella denitrificans ATCC 33394] Length = 182 Score = 39.9 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ +D+IIEI + Sbjct: 10 LDMEMTGLNPDSDKIIEIAMI 30 >gi|313773620|gb|EFS39586.1| exonuclease [Propionibacterium acnes HL074PA1] gi|313793857|gb|EFS41881.1| exonuclease [Propionibacterium acnes HL110PA1] gi|313801249|gb|EFS42500.1| exonuclease [Propionibacterium acnes HL110PA2] gi|313811456|gb|EFS49170.1| exonuclease [Propionibacterium acnes HL083PA1] gi|313831196|gb|EFS68910.1| exonuclease [Propionibacterium acnes HL007PA1] gi|313834219|gb|EFS71933.1| exonuclease [Propionibacterium acnes HL056PA1] gi|313840029|gb|EFS77743.1| exonuclease [Propionibacterium acnes HL086PA1] gi|314963788|gb|EFT07888.1| exonuclease [Propionibacterium acnes HL082PA1] gi|314974073|gb|EFT18169.1| exonuclease [Propionibacterium acnes HL053PA1] gi|314976638|gb|EFT20733.1| exonuclease [Propionibacterium acnes HL045PA1] gi|314984301|gb|EFT28393.1| exonuclease [Propionibacterium acnes HL005PA1] gi|315079637|gb|EFT51630.1| exonuclease [Propionibacterium acnes HL053PA2] gi|315081132|gb|EFT53108.1| exonuclease [Propionibacterium acnes HL078PA1] gi|315095417|gb|EFT67393.1| exonuclease [Propionibacterium acnes HL038PA1] gi|327328524|gb|EGE70286.1| oligoribonuclease [Propionibacterium acnes HL096PA2] gi|327444311|gb|EGE90965.1| exonuclease [Propionibacterium acnes HL043PA2] gi|327444807|gb|EGE91461.1| exonuclease [Propionibacterium acnes HL043PA1] gi|327452117|gb|EGE98771.1| exonuclease [Propionibacterium acnes HL092PA1] gi|328759959|gb|EGF73543.1| oligoribonuclease [Propionibacterium acnes HL099PA1] Length = 202 Score = 39.9 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD +D +IE+ A+ V + P + + + Sbjct: 5 IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMH 60 >gi|303232128|ref|ZP_07318831.1| exonuclease [Veillonella atypica ACS-049-V-Sch6] gi|302513234|gb|EFL55273.1| exonuclease [Veillonella atypica ACS-049-V-Sch6] Length = 327 Score = 39.9 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 25/187 (13%) Query: 7 MRKIVFDIE------------------TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 M I+FD+E TG II+IGA++L + + +F +++ Sbjct: 1 MDYIIFDLEWNQPYSNDISFMKRARMPLTG------EIIQIGAIKLNENLEIVDSFTMYV 54 Query: 49 CPNGRKNSPEALKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 P + + +K GIT++ L F +S F + + + N Sbjct: 55 KPKYLPHMHKHVKALTGITNQDLNRGVPFRVAYSHFQQWCGKDYMLLSWGADDILILREN 114 Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 L ++ D L +R + + + + I+ S H AL D+ Sbjct: 115 LLLHKLKSIDYDSWADAQMLYSYQRYGTTQQYSVAHAMEDLHISSEELSAHNALHDAIFT 174 Query: 168 SDVYIKM 174 + + K+ Sbjct: 175 AHICQKL 181 >gi|295394431|ref|ZP_06804655.1| oligoribonuclease [Brevibacterium mcbrellneri ATCC 49030] gi|294972783|gb|EFG48634.1| oligoribonuclease [Brevibacterium mcbrellneri ATCC 49030] Length = 200 Score = 39.9 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 10 IV-FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 IV D E TGL+ + D +IE+ A+ D + + V + P+ R + + Sbjct: 6 IVWIDCEMTGLELEVDELIEVAAIVTDFDLNPVDEGVDVIIKPSQRARENMNDFVTNMH 64 >gi|212633655|ref|YP_002310180.1| oligoribonuclease [Shewanella piezotolerans WP3] gi|212555139|gb|ACJ27593.1| Exonuclease [Shewanella piezotolerans WP3] Length = 181 Score = 39.9 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ DRIIEI Sbjct: 11 VDLEMTGLEPAVDRIIEIA 29 >gi|150389968|ref|YP_001320017.1| exonuclease-like protein [Alkaliphilus metalliredigens QYMF] gi|149949830|gb|ABR48358.1| exonuclease-like protein [Alkaliphilus metalliredigens QYMF] Length = 342 Score = 39.9 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44 MI ++ + + DIETTGL +I IG + +D + F Sbjct: 20 MILNSQ-KYCIVDIETTGLSKIYHHVILIGILYPVDDHLVLKQF 62 >gi|332974570|gb|EGK11490.1| oligoribonuclease [Kingella kingae ATCC 23330] Length = 182 Score = 39.9 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 45/179 (25%), Gaps = 9/179 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70 D+E TGL+ D+IIEI + T++ V P + + + Sbjct: 10 LDMEMTGLNPDTDKIIEIAMI------ITDKHLNVLAQSPVYAIHQSDEIMNGMDEWCTT 63 Query: 71 KDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + W ++ I++D R + L Sbjct: 64 THARTGLTQRVKESTWTEAQVESELLAWMQQWLPANTTPMCGNTIHQDRRFMVRHMPRLE 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + L L KR+ + + I+ + Sbjct: 124 AFFHYRNLDVSTLKELAKRWNPAVYKGIVKKGSHQALDDILESIEELRYYRATFLRVDE 182 >gi|309812148|ref|ZP_07705906.1| oligoribonuclease [Dermacoccus sp. Ellin185] gi|308433835|gb|EFP57709.1| oligoribonuclease [Dermacoccus sp. Ellin185] Length = 209 Score = 39.9 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG 52 R + D E TGLD +ND +IE+ A V + ++ V + P Sbjct: 14 RIVWIDCEMTGLDLENDALIEVAALVTDFELNQLGDGVDVVIKPEP 59 >gi|289428666|ref|ZP_06430349.1| exonuclease [Propionibacterium acnes J165] gi|289158064|gb|EFD06284.1| exonuclease [Propionibacterium acnes J165] Length = 223 Score = 39.9 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD +D +IE+ A+ V + P + + + Sbjct: 26 IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMH 81 >gi|188533646|ref|YP_001907443.1| exodeoxyribonuclease X [Erwinia tasmaniensis Et1/99] gi|188028688|emb|CAO96550.1| DNA exonuclease X [Erwinia tasmaniensis Et1/99] Length = 221 Score = 39.9 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 20/174 (11%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+E+ +V++++ + P+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCGL---QGGIVEVASVDVINGQ-IANPMSDLISPD-RPISRQAMDVHKITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP+ + + ++AHNA FD + I T+++A Sbjct: 59 RGKPTIEQAIGRYH-----GSPYYVAHNASFDRRMLPE----------MNGEWICTMTLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 RR P + +L + + +S + A + ++ + + Sbjct: 104 RRLWPGLKYGNEALRQALRLDVSPPPELHAHRALYDCYVTAALLVRIMTFSGWD 157 >gi|34497823|ref|NP_902038.1| oligoribonuclease [Chromobacterium violaceum ATCC 12472] gi|41017434|sp|Q7NVH5|ORN_CHRVO RecName: Full=Oligoribonuclease gi|34103679|gb|AAQ60040.1| oligoribonuclease protein [Chromobacterium violaceum ATCC 12472] Length = 181 Score = 39.9 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ DRIIE+ + Sbjct: 11 LDMEMTGLNPDQDRIIEVAMI 31 >gi|312872015|ref|ZP_07732095.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2062A-h1] gi|312873705|ref|ZP_07733751.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2052A-d] gi|315653310|ref|ZP_07906232.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus iners ATCC 55195] gi|325911899|ref|ZP_08174303.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 143-D] gi|311090805|gb|EFQ49203.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2052A-d] gi|311092468|gb|EFQ50832.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2062A-h1] gi|315489235|gb|EFU78875.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus iners ATCC 55195] gi|325476405|gb|EGC79567.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 143-D] Length = 177 Score = 39.9 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 60/167 (35%), Gaps = 7/167 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M D ET + D + V + D +F + P +K+HGIT Sbjct: 1 MNFTAMDFET--ANRHYDSACSLALVLVRDNKII-DSFYTVINPQ-MPFDKNNIKIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +KD P+ + +AHNA+FD + L++ N I Sbjct: 57 ANDVKDAPT-MDEVWPKIRLLFQPGMLVVAHNARFDCNVMKKSLKKYNIAEPHYLTIDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + L+++ + I + H H AL DS +++ IK Sbjct: 116 ATSRALIPNLKNYRLDTVSNQLNIDLWH--HHNALSDSEACAEILIK 160 >gi|227832929|ref|YP_002834636.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum ATCC 700975] gi|227453945|gb|ACP32698.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum ATCC 700975] Length = 233 Score = 39.9 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 16/36 (44%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT 43 R + FD+ETT + K RI+ V + R Sbjct: 17 RMLSFDLETTSVKPKEARIVTSALVRIDGREVDKRE 52 >gi|224370128|ref|YP_002604292.1| SbcB [Desulfobacterium autotrophicum HRM2] gi|223692845|gb|ACN16128.1| SbcB [Desulfobacterium autotrophicum HRM2] Length = 471 Score = 39.9 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 2/126 (1%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+ + +DIET+GL+ D+I+ A+ + + +RT V N SP A H Sbjct: 1 MKTFLFYDIETSGLNPAFDQILTFAAIRTDLELREIDRTSIVISLRNDIVPSPGAFITHR 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 +T E LKD + N + I +N+ N + Sbjct: 61 LTPEDLKDGLCEYQGVALIHRLLNTPDTISIGYNSLGFDDEFLRFAFYRNLLDPYTHQYA 120 Query: 125 DTLSIA 130 + + Sbjct: 121 NDCARM 126 >gi|242780586|ref|XP_002479627.1| RNA exonuclease Rex2, putative [Talaromyces stipitatus ATCC 10500] gi|218719774|gb|EED19193.1| RNA exonuclease Rex2, putative [Talaromyces stipitatus ATCC 10500] Length = 189 Score = 39.9 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 9/20 (45%), Positives = 13/20 (65%) Query: 12 FDIETTGLDSKNDRIIEIGA 31 D E TGLD + D+I++I Sbjct: 13 VDCEMTGLDPETDQILQICC 32 >gi|212526340|ref|XP_002143327.1| RNA exonuclease Rex2, putative [Penicillium marneffei ATCC 18224] gi|210072725|gb|EEA26812.1| RNA exonuclease Rex2, putative [Penicillium marneffei ATCC 18224] Length = 189 Score = 39.9 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 9/20 (45%), Positives = 13/20 (65%) Query: 12 FDIETTGLDSKNDRIIEIGA 31 D E TGLD + D+I++I Sbjct: 13 VDCEMTGLDPETDQILQICC 32 >gi|326385547|ref|ZP_08207181.1| transposase [Novosphingobium nitrogenifigens DSM 19370] gi|326209881|gb|EGD60664.1| transposase [Novosphingobium nitrogenifigens DSM 19370] Length = 307 Score = 39.9 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 4/79 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ET ++ I +IG V D + ++ + P + +HGIT + Sbjct: 33 FVVVDVET--ACARVSSICQIGIVGFRDGREMF-AYETLVDPRDEFAP-FNVAIHGITAD 88 Query: 69 FLKDKPSFSSIFSEFWDFF 87 + +P+F I Sbjct: 89 RVDGEPTFDDIHGIVDAHL 107 >gi|301167118|emb|CBW26697.1| hypothetical protein BMS_1877 [Bacteriovorax marinus SJ] Length = 197 Score = 39.9 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 3/91 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + FDIE TGL +++D IIE G V ++T K + Sbjct: 1 MKYLSFDIEATGL-AEDDLIIEFGMVPFC--AETGEIAHELQRNWYIKCPSFEELKPKLD 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97 + S + ++ + Sbjct: 58 QWVIDHNEELISKAHAQGEELSKFKEILTEY 88 >gi|296824674|ref|XP_002850692.1| oligoribonuclease [Arthroderma otae CBS 113480] gi|238838246|gb|EEQ27908.1| oligoribonuclease [Arthroderma otae CBS 113480] Length = 188 Score = 39.9 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 10/20 (50%), Positives = 13/20 (65%) Query: 12 FDIETTGLDSKNDRIIEIGA 31 D E TGLD ND+I++I Sbjct: 13 VDCEMTGLDPANDKILQICC 32 >gi|296139064|ref|YP_003646307.1| exonuclease RNase T and DNA polymerase III [Tsukamurella paurometabola DSM 20162] gi|296027198|gb|ADG77968.1| Exonuclease RNase T and DNA polymerase III [Tsukamurella paurometabola DSM 20162] Length = 198 Score = 39.9 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 15/26 (57%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37 D E TGLD +DR+IEI A+ Sbjct: 8 VDCEMTGLDLTSDRLIEIAALVTDGD 33 >gi|255655442|ref|ZP_05400851.1| putative exonuclease [Clostridium difficile QCD-23m63] gi|296451434|ref|ZP_06893171.1| exonuclease superfamily protein [Clostridium difficile NAP08] gi|296880217|ref|ZP_06904183.1| exonuclease superfamily protein [Clostridium difficile NAP07] gi|296259701|gb|EFH06559.1| exonuclease superfamily protein [Clostridium difficile NAP08] gi|296428806|gb|EFH14687.1| exonuclease superfamily protein [Clostridium difficile NAP07] Length = 1039 Score = 39.9 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 + DIE +GLD N I+E+GAV++ D+ T++ + Sbjct: 12 VFLDIEVSGLDCLNSEILEVGAVKVKDWKIY--TYESLIK 49 >gi|83943990|ref|ZP_00956447.1| exonuclease [Sulfitobacter sp. EE-36] gi|83845237|gb|EAP83117.1| exonuclease [Sulfitobacter sp. EE-36] Length = 188 Score = 39.9 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 11/167 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 I D+ET DS + I +IG V D T + ++ P +P + LHGI Sbjct: 11 FIALDVETACGDSAS--ICQIGIACVGFDDSILT---WSTYVDP-LMPFAPFNVDLHGIG 64 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++ SF+ I+ + W + +++FD INA + + Sbjct: 65 PETVRGAGSFAQIWPQIWPLLSRHPMV---QHSRFDEYAINAACKAQGLPRPRLTWHDSV 121 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R N + L + H A D+ + V ++ Sbjct: 122 TIARRAWPELKGNGGHGLANLKQVLNLDFHHHDAGEDARAAAMVVLR 168 >gi|225717126|gb|ACO14409.1| Oligoribonuclease, mitochondrial precursor [Esox lucius] Length = 207 Score = 39.9 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 12/27 (44%), Positives = 18/27 (66%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAV 32 K R + D+E TGLD + D+IIE+ + Sbjct: 11 KQRMVWVDLEMTGLDIEKDQIIEMACI 37 >gi|170728503|ref|YP_001762529.1| oligoribonuclease [Shewanella woodyi ATCC 51908] gi|169813850|gb|ACA88434.1| Exonuclease RNase T and DNA polymerase III [Shewanella woodyi ATCC 51908] Length = 181 Score = 39.9 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ DRIIEI Sbjct: 11 VDLEMTGLEPDVDRIIEIA 29 >gi|38233700|ref|NP_939467.1| hypothetical protein DIP1110 [Corynebacterium diphtheriae NCTC 13129] gi|38199961|emb|CAE49630.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 59 Score = 39.9 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 14/25 (56%) Query: 15 ETTGLDSKNDRIIEIGAVELLDYSK 39 ETT LD +N I+ IG V + + Sbjct: 2 ETTSLDPRNGSIVAIGWVPVENGVI 26 >gi|301784463|ref|XP_002927641.1| PREDICTED: ERI1 exoribonuclease 2-like [Ailuropoda melanoleuca] Length = 679 Score = 39.9 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 47/181 (25%), Gaps = 14/181 (7%) Query: 10 IVFDIETT----GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK----NSPEAL 60 IV D E+T G ++ IIE AV L + F ++ P E Sbjct: 38 IVIDFESTCWNDGKRHQSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPILSEFCMELT 97 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + + S F ++ ++ A + D Sbjct: 98 GIKQAQVDEGVPLRICLSQFCKWIQKIQQEKKIIFATGIPDLPNAEVKLCAFVTWSDWDL 157 Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ + P N L Y I S L +V I+ + Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFY----GRKPKGLSGALQEVGIEFLGREH 213 Query: 180 Q 180 Sbjct: 214 S 214 >gi|281339701|gb|EFB15285.1| hypothetical protein PANDA_017444 [Ailuropoda melanoleuca] Length = 672 Score = 39.9 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 47/181 (25%), Gaps = 14/181 (7%) Query: 10 IVFDIETT----GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK----NSPEAL 60 IV D E+T G ++ IIE AV L + F ++ P E Sbjct: 31 IVIDFESTCWNDGKRHQSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPILSEFCMELT 90 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + + S F ++ ++ A + D Sbjct: 91 GIKQAQVDEGVPLRICLSQFCKWIQKIQQEKKIIFATGIPDLPNAEVKLCAFVTWSDWDL 150 Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ + P N L Y I S L +V I+ + Sbjct: 151 GVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFY----GRKPKGLSGALQEVGIEFLGREH 206 Query: 180 Q 180 Sbjct: 207 S 207 >gi|254804313|ref|YP_003082534.1| oligoribonuclease [Neisseria meningitidis alpha14] gi|254667855|emb|CBA03898.1| oligoribonuclease [Neisseria meningitidis alpha14] Length = 215 Score = 39.9 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 9/21 (42%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + +RIIE+ + Sbjct: 38 LDMEMTGLNPETNRIIEVAMI 58 >gi|209731072|gb|ACI66405.1| Oligoribonuclease, mitochondrial precursor [Salmo salar] Length = 207 Score = 39.9 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%) Query: 7 MRK--IVFDIETTGLDSKNDRIIEIGAV 32 MR+ + D+E TGLD + D+IIE+ + Sbjct: 10 MRQRMVWVDLEMTGLDIEKDQIIEMACI 37 >gi|188991408|ref|YP_001903418.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. B100] gi|126030541|pdb|2GBZ|A Chain A, The Crystal Structure Of Xc847 From Xanthomonas Campestris: A 3-5 Oligoribonuclease Of Dnaq Fold Family With A Novel Opposingly-Shifted Helix gi|167733168|emb|CAP51366.1| Oligoribonuclease [Xanthomonas campestris pv. campestris] Length = 194 Score = 39.9 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 13/23 (56%), Positives = 15/23 (65%) Query: 8 RKIVFDIETTGLDSKNDRIIEIG 30 R I D+E TGLD+ D IIEI Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32 >gi|310767851|gb|ADP12801.1| exodeoxyribonuclease X [Erwinia sp. Ejp617] Length = 221 Score = 39.9 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 20/174 (11%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL ++E+ +V++++ + P+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCGL---QGGVVEVASVDVINGQIL-NPMSDLISPD-RPISRQAMAVHKITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP+ + + ++AHNA FD + I T+++A Sbjct: 59 RGKPAIEQAIGRYH-----GSPFYVAHNASFDRRMLPE----------MHGDWICTMTLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 RR P + +L + + +S + A + +M S + Sbjct: 104 RRLWPGLKYTNEALRQSLQLEVSPPADLHAHRALYDCYVTAALLMRIMSFSGWD 157 >gi|303229628|ref|ZP_07316416.1| exonuclease [Veillonella atypica ACS-134-V-Col7a] gi|302515753|gb|EFL57707.1| exonuclease [Veillonella atypica ACS-134-V-Col7a] Length = 327 Score = 39.9 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 68/187 (36%), Gaps = 25/187 (13%) Query: 7 MRKIVFDIE------------------TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 M I+FD+E TG II+IGA++L + + +F +++ Sbjct: 1 MDYIIFDLEWNQPYSNDISFMKRARMPLTG------EIIQIGAIKLNENLEIVDSFTMYV 54 Query: 49 CPNGRKNSPEALKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 P + + +K GIT++ L F + +S F + + + N Sbjct: 55 KPKYLPHMHKHVKALTGITNQDLNRGVPFRAAYSHFQQWCGKDYMLLSWGADDILILREN 114 Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 L ++ D L +R + + + + I+ S H AL D+ Sbjct: 115 LLLHKLKSIDYDSWADAQMLYSYQRYGTTQQYSVAHAMEDLHISSEELSAHNALHDAIFT 174 Query: 168 SDVYIKM 174 + + K+ Sbjct: 175 AHICQKL 181 >gi|293344344|ref|XP_002725706.1| PREDICTED: exonuclease domain containing 1-like [Rattus norvegicus] Length = 687 Score = 39.9 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 51/177 (28%), Gaps = 6/177 (3%) Query: 10 IVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 IV D E+T G + IIE AV L + F ++ P S +L Sbjct: 38 IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTELT 97 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + + S+F + ++ + A D E++ + Sbjct: 98 GIKQVQVDEGVPLKICLSQFGKWIHKLQQQKKISFATGDSEPSTPEVKPCAFVTWSDWDL 157 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L ++ + + T S L +V I+ Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYNRKPKGLSGALQEVGIEFSGREHS 214 >gi|156052617|ref|XP_001592235.1| hypothetical protein SS1G_06475 [Sclerotinia sclerotiorum 1980] gi|154704254|gb|EDO03993.1| hypothetical protein SS1G_06475 [Sclerotinia sclerotiorum 1980 UF-70] Length = 190 Score = 39.9 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 2/57 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD + D IIEI + + + + Sbjct: 13 IDCEMTGLDIEKDVIIEISCIITNGNLEILDKEGWNAVIHQDKETMDKMDEWCTKTH 69 >gi|21231607|ref|NP_637524.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768271|ref|YP_243033.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. 8004] gi|23821916|sp|Q8P8S1|ORN_XANCP RecName: Full=Oligoribonuclease gi|81305754|sp|Q4UVB0|ORN_XANC8 RecName: Full=Oligoribonuclease gi|21113297|gb|AAM41448.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573603|gb|AAY49013.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. 8004] Length = 194 Score = 39.9 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 13/23 (56%), Positives = 15/23 (65%) Query: 8 RKIVFDIETTGLDSKNDRIIEIG 30 R I D+E TGLD+ D IIEI Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32 >gi|327479762|gb|AEA83072.1| ribonuclease T [Pseudomonas stutzeri DSM 4166] Length = 224 Score = 39.9 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 59/186 (31%), Gaps = 13/186 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP---NGRKNSPEALKL 62 +V D+E G + D ++EI AV + T + P + + Sbjct: 32 VVIDVECGGFNCATDALLEIAAVTVGMDEQGLLYPQDTLFYRVEPFAGANIEPAALEFTG 91 Query: 63 HGITDEFLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + P + + A + HN+ FD+GF+NA + R Sbjct: 92 IKLDHPLRMAVPEQQALTDIFRSVRKAVKSAGCKRAILVGHNSSFDLGFLNAAIARCEIK 151 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + L C+ GI R H A D+ ++++ ++ Sbjct: 152 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIVN 211 Query: 177 GGSQIN 182 ++ Sbjct: 212 RWKEMG 217 >gi|332528277|ref|ZP_08404282.1| oligoribonuclease [Hylemonella gracilis ATCC 19624] gi|332042297|gb|EGI78618.1| oligoribonuclease [Hylemonella gracilis ATCC 19624] Length = 195 Score = 39.9 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 19/31 (61%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 ++K+ + D E TGLD + +R+IEI + Sbjct: 14 LKKSDQNLVWIDCEMTGLDPEKERLIEIAII 44 >gi|183985996|gb|AAI66309.1| LOC100158598 protein [Xenopus (Silurana) tropicalis] Length = 273 Score = 39.9 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%) Query: 5 NKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 N M R + D+E TGLD + D IIE+ + Sbjct: 69 NDMGQRMVWVDLEMTGLDIEKDHIIEMACL 98 >gi|28056789|gb|AAO28661.1| exodeoxyribonuclease I [Xylella fastidiosa Temecula1] Length = 494 Score = 39.9 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 41/154 (26%), Gaps = 4/154 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGIT 66 + +D+ET G D + RI + AV + + P P A + GIT Sbjct: 21 FLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGIT 80 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + + Q + F + ++ + Sbjct: 81 PQHAQREGINEAAAFAHIAMQMTQPHTCSL--GYNTLRFDDEFIRYGLFRHFYDPYEREW 138 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 + R L + GI R Sbjct: 139 RNGNSRWDLLDMLRLMHAVRPEGIHWPTREDGAP 172 >gi|226193790|ref|ZP_03789392.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei Pakistan 9] gi|225934095|gb|EEH30080.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei Pakistan 9] Length = 55 Score = 39.9 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 D+ETTG + RI EI ++ + T+ + P Sbjct: 17 FVDLETTGGSAAEHRITEI--GVVVVNANGVSTWTTLVDPQ 55 >gi|29566899|ref|NP_818464.1| gp164 [Mycobacterium phage Omega] gi|29425624|gb|AAN12806.1| gp164 [Mycobacterium phage Omega] Length = 178 Score = 39.9 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 5/35 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44 IV D ET GL N ++EI AV +T F Sbjct: 6 IVVDTETGGLGP-NAPVLEIAAV----NVETGEEF 35 >gi|12855883|dbj|BAB30489.1| unnamed protein product [Mus musculus] Length = 274 Score = 39.9 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 53/177 (29%), Gaps = 6/177 (3%) Query: 10 IVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 IV D E+T G + IIE AV L + F ++ P S +L Sbjct: 38 IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTELT 97 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + + S+F + ++ + A D +E++ + Sbjct: 98 GIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTWSDWDL 157 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L R+ + + T K S L +V I+ Sbjct: 158 GVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQEVGIEFSGREHS 214 >gi|13242610|ref|NP_077624.1| EsV-1-139 [Ectocarpus siliculosus virus 1] gi|13177413|gb|AAK14557.1|AF204951_139 EsV-1-139 [Ectocarpus siliculosus virus 1] Length = 274 Score = 39.9 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 24/198 (12%), Positives = 48/198 (24%), Gaps = 2/198 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL-HGITDEF 69 D+ETTGLD+ + I+EI V D ++ + V P+ + + Sbjct: 46 IDMETTGLDTDTNLILEIVMVVTDRDLNEIDSMRLVLHHPHSILMARSSTWCRKKFCHRR 105 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 F + + W + + +I R + Sbjct: 106 EGGNGLFEACHFSALSHHEAEYRMWNFFDHYSKDVGGRYDTSQITSSQPFFDRTLGANGT 165 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 +SR +R + D L + + T Sbjct: 166 FIGASDTSRYHHQHHPRRSNFKKCLLAGSTVYFDRIFLLKYFPCLKTFFHYRVVDVSTPL 225 Query: 190 DRFFKEEKKTVPNISLLK 207 + + + Sbjct: 226 EMVRRWRPDVAAKLPRRN 243 >gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100] gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100] Length = 879 Score = 39.9 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 48/181 (26%), Gaps = 10/181 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD ETTGLD+K +I+ +S + + F P + Sbjct: 319 VAFDTETTGLDTKEAKIV--------GFSFCSHESEAFYVPLAHDY--LGVCKQISMQAA 368 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 K + + N + + + K+P + Sbjct: 369 KKGIEKIYQSTVIGHNLKYDFEIIKNNFNLLPPKNYADTMILAWLKEPSLRVNMDVLAKR 428 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 DL + + ++ A D+++ Y+ + + Sbjct: 429 IFDYETLHFEDLVKKGESFAGVDVEKACKYAAEDAYITLRFYLYFLKNLEKSLLELAQKS 488 Query: 190 D 190 + Sbjct: 489 E 489 >gi|237785970|ref|YP_002906675.1| oligoribonuclease [Corynebacterium kroppenstedtii DSM 44385] gi|237758882|gb|ACR18132.1| putative oligoribonuclease [Corynebacterium kroppenstedtii DSM 44385] Length = 222 Score = 39.9 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 14/25 (56%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D E TGLD ++EI A+ Sbjct: 24 RIVWIDCEMTGLDPSTHVLVEIAAI 48 >gi|52843158|ref|YP_096957.1| ribonuclease T [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|19880967|gb|AAM00600.1| Rnase T [Legionella pneumophila] gi|52630269|gb|AAU29010.1| ribonuclease T [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 207 Score = 39.9 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDY-----SKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D+ET G+D + + ++E+ V L K + F+ L G + ++L+ + Sbjct: 22 VVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKDSSYFEHILPFPGAELDQKSLEFNQ 81 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + Q A + HNA FD+ FI A ++R Sbjct: 82 IDPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIKAAIKRTGIK 141 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L + G+ + H A+ D+ +D++ M+ Sbjct: 142 SP-FHAFTCFDTATLAGLIFGETVLAKAAQAAGLHFDSQEAHSAIYDAEKTADLFCLMIN 200 Query: 177 GGSQINF 183 +N Sbjct: 201 KWRMLNI 207 >gi|154340904|ref|XP_001566405.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063728|emb|CAM39913.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 405 Score = 39.9 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 14/188 (7%) Query: 10 IVFDIETTGLDSKN---DRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKN-SPEALKL 62 IV D+E T +IEI V + R+F ++ P +P +L Sbjct: 77 IVVDVEATCEQHNRNYPHEVIEIPGVLIDVRTGQVDRARSFHTYVKPWRNPRLTPFCTQL 136 Query: 63 HGITDEFLKDKPSF----SSIFSEFWDFFNEQNAEWIAHNAKFDVG---FINAELQRINK 115 GIT E + PS + + A + +D + L+ Sbjct: 137 TGITQEMVDAAPSITEAVQLFEKWYRETIPRGAKTIFAADGPWDFKNFIHEHHILRDHVG 196 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P +D + + R H D++ ++ + + MM Sbjct: 197 FPSIFYEYLDIRTTFAHRLNHGVPIKLDAMLRKMHLRFDGRPHSGFDDAYNIARLTVAMM 256 Query: 176 VGGSQINF 183 G ++F Sbjct: 257 KVGCVLDF 264 >gi|258546253|ref|ZP_05706487.1| DNA polymerase III, epsilon subunit [Cardiobacterium hominis ATCC 15826] gi|258518519|gb|EEV87378.1| DNA polymerase III, epsilon subunit [Cardiobacterium hominis ATCC 15826] Length = 141 Score = 39.9 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 7/92 (7%) Query: 145 CKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204 CK YGI S+R+ HGALLDS LL++VY+K+ Q F F + + +TV + Sbjct: 50 CKYYGIDNSNRTLHGALLDSQLLAEVYLKLTT--EQSGFDFAAPDATPAPQPVETVSVAA 107 Query: 205 LLKRDKP-----LFTRITKEELDEHDKTIQTL 231 + L + EE H ++ L Sbjct: 108 PVPAAPSQPGAWLAIAVPDEEAAAHRAIMEKL 139 >gi|94972232|ref|YP_594272.1| hypothetical protein Dgeo_2765 [Deinococcus geothermalis DSM 11300] gi|94554283|gb|ABF44198.1| 3'-5' exonuclease [Deinococcus geothermalis DSM 11300] Length = 116 Score = 39.9 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 12/52 (23%) Query: 8 RKIVF-------DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52 R+IV D ETT D +N IIE+ V + F+ + P G Sbjct: 66 REIVLRGTWLSLDTETTDKD-ENAEIIEVALVSPIGEVL----FESLVRPLG 112 >gi|329945803|ref|ZP_08293490.1| exonuclease [Actinomyces sp. oral taxon 170 str. F0386] gi|328528251|gb|EGF55229.1| exonuclease [Actinomyces sp. oral taxon 170 str. F0386] Length = 258 Score = 39.5 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 FD ETTG+D DR++ V Sbjct: 26 FDTETTGVDPGRDRLVTAALV 46 >gi|227529584|ref|ZP_03959633.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC 49540] gi|227350483|gb|EEJ40774.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC 49540] Length = 178 Score = 39.5 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 55/175 (31%), Gaps = 5/175 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + + D F + P +++HGI Sbjct: 1 MNFVAMDFET--ANGKRYSACSLALTIVRDSK-IADEFYTLINPQT-DFFWRNVQIHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E ++D P+F + F IAHN FD + L P + Sbjct: 57 EEDVQDAPTF-PEVWQHIKQFYRPEQLVIAHNNSFDNSVLKNTLLHYGIQPPTFQTLDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 S R LN++C I + H + +Y G Q+ Sbjct: 116 KSSRRLIPGLDNYRLNTVCDALQIDLHHHHNALDDAQACANILLYEAQHFSGEQL 170 >gi|149194243|ref|ZP_01871340.1| DNA polymerase III subunit epsilon [Caminibacter mediatlanticus TB-2] gi|149135418|gb|EDM23897.1| DNA polymerase III subunit epsilon [Caminibacter mediatlanticus TB-2] Length = 248 Score = 39.5 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 + D+E K +IIEIGAV+L + + F + Sbjct: 68 ILDLEVNNSKPKEGQIIEIGAVKLKNLVPIDE-FSFLI 104 >gi|149235658|ref|XP_001523707.1| oligoribonuclease, mitochondrial precursor [Lodderomyces elongisporus NRRL YB-4239] gi|146452686|gb|EDK46942.1| oligoribonuclease, mitochondrial precursor [Lodderomyces elongisporus NRRL YB-4239] Length = 269 Score = 39.5 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 4/59 (6%) Query: 12 FDIETTGLDSKN-DRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD DRIIEI + + + ++ + Sbjct: 80 VDCEMTGLDVLGEDRIIEICCIVTDENLEVLGNGDYYESTIYYPQETLDKMDEWCQTTH 138 >gi|78047756|ref|YP_363931.1| oligoribonuclease [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325928670|ref|ZP_08189846.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas perforans 91-118] gi|123585062|sp|Q3BTI2|ORN_XANC5 RecName: Full=Oligoribonuclease gi|78036186|emb|CAJ23877.1| oligoribonuclease [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325540966|gb|EGD12532.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas perforans 91-118] Length = 194 Score = 39.5 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 13/23 (56%), Positives = 15/23 (65%) Query: 8 RKIVFDIETTGLDSKNDRIIEIG 30 R I D+E TGLD+ D IIEI Sbjct: 10 RLIWIDLEMTGLDTDRDSIIEIA 32 >gi|198284062|ref|YP_002220383.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665313|ref|YP_002426714.1| oligoribonuclease Orn [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248583|gb|ACH84176.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517526|gb|ACK78112.1| oligoribonuclease Orn [Acidithiobacillus ferrooxidans ATCC 23270] Length = 194 Score = 39.5 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 8 RKIVFDIETTGLDSKNDRIIEIG 30 R I D+E TGL D+I+EI Sbjct: 7 RLIWIDLEMTGLHPGQDQILEIA 29 >gi|327329611|gb|EGE71367.1| oligoribonuclease [Propionibacterium acnes HL096PA3] Length = 202 Score = 39.5 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD +D +IE+ A+ V + P + + + Sbjct: 5 IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMH 60 >gi|50843110|ref|YP_056337.1| oligoribonuclease [Propionibacterium acnes KPA171202] gi|81826407|sp|Q6A786|ORN_PROAC RecName: Full=Oligoribonuclease gi|50840712|gb|AAT83379.1| oligoribonuclease [Propionibacterium acnes KPA171202] gi|313763467|gb|EFS34831.1| exonuclease [Propionibacterium acnes HL013PA1] gi|313808072|gb|EFS46553.1| exonuclease [Propionibacterium acnes HL087PA2] gi|313813519|gb|EFS51233.1| exonuclease [Propionibacterium acnes HL025PA1] gi|313816648|gb|EFS54362.1| exonuclease [Propionibacterium acnes HL059PA1] gi|313819642|gb|EFS57356.1| exonuclease [Propionibacterium acnes HL046PA2] gi|313822034|gb|EFS59748.1| exonuclease [Propionibacterium acnes HL036PA1] gi|313823730|gb|EFS61444.1| exonuclease [Propionibacterium acnes HL036PA2] gi|313826052|gb|EFS63766.1| exonuclease [Propionibacterium acnes HL063PA1] gi|313829524|gb|EFS67238.1| exonuclease [Propionibacterium acnes HL063PA2] gi|314914829|gb|EFS78660.1| exonuclease [Propionibacterium acnes HL005PA4] gi|314919419|gb|EFS83250.1| exonuclease [Propionibacterium acnes HL050PA1] gi|314920674|gb|EFS84505.1| exonuclease [Propionibacterium acnes HL050PA3] gi|314924777|gb|EFS88608.1| exonuclease [Propionibacterium acnes HL036PA3] gi|314930554|gb|EFS94385.1| exonuclease [Propionibacterium acnes HL067PA1] gi|314954492|gb|EFS98898.1| exonuclease [Propionibacterium acnes HL027PA1] gi|314957575|gb|EFT01678.1| exonuclease [Propionibacterium acnes HL002PA1] gi|314961982|gb|EFT06083.1| exonuclease [Propionibacterium acnes HL002PA2] gi|314968385|gb|EFT12483.1| exonuclease [Propionibacterium acnes HL037PA1] gi|314978912|gb|EFT23006.1| exonuclease [Propionibacterium acnes HL072PA2] gi|314986647|gb|EFT30739.1| exonuclease [Propionibacterium acnes HL005PA2] gi|314991003|gb|EFT35094.1| exonuclease [Propionibacterium acnes HL005PA3] gi|315083650|gb|EFT55626.1| exonuclease [Propionibacterium acnes HL027PA2] gi|315087019|gb|EFT58995.1| exonuclease [Propionibacterium acnes HL002PA3] gi|315089194|gb|EFT61170.1| exonuclease [Propionibacterium acnes HL072PA1] gi|315099093|gb|EFT71069.1| exonuclease [Propionibacterium acnes HL059PA2] gi|315100423|gb|EFT72399.1| exonuclease [Propionibacterium acnes HL046PA1] gi|315106884|gb|EFT78860.1| exonuclease [Propionibacterium acnes HL030PA1] gi|315109117|gb|EFT81093.1| exonuclease [Propionibacterium acnes HL030PA2] gi|327334124|gb|EGE75838.1| oligoribonuclease [Propionibacterium acnes HL097PA1] gi|327446295|gb|EGE92949.1| exonuclease [Propionibacterium acnes HL013PA2] gi|327454846|gb|EGF01501.1| exonuclease [Propionibacterium acnes HL087PA3] gi|327457869|gb|EGF04524.1| exonuclease [Propionibacterium acnes HL083PA2] gi|328752440|gb|EGF66056.1| exonuclease [Propionibacterium acnes HL020PA1] gi|328755323|gb|EGF68939.1| exonuclease [Propionibacterium acnes HL087PA1] gi|328758196|gb|EGF71812.1| exonuclease [Propionibacterium acnes HL025PA2] gi|332676038|gb|AEE72854.1| oligoribonuclease [Propionibacterium acnes 266] Length = 202 Score = 39.5 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD +D +IE+ A+ V + P + + + Sbjct: 5 IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMH 60 >gi|170587529|ref|XP_001898528.1| Smfn protein [Brugia malayi] gi|158594003|gb|EDP32594.1| Smfn protein, putative [Brugia malayi] Length = 184 Score = 39.5 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 1 MIRKNKMRKIV-FDIETTGLDSKNDRIIEIGA 31 M + N++R+IV D E TGLD + I+EI Sbjct: 1 MSKANRVRRIVWVDCEMTGLDVSSKTIVEIAC 32 >gi|296112880|ref|YP_003626818.1| oligoribonuclease [Moraxella catarrhalis RH4] gi|295920574|gb|ADG60925.1| oligoribonuclease [Moraxella catarrhalis RH4] gi|326561112|gb|EGE11477.1| oligoribonuclease [Moraxella catarrhalis 7169] gi|326564455|gb|EGE14682.1| oligoribonuclease [Moraxella catarrhalis 103P14B1] gi|326564568|gb|EGE14793.1| oligoribonuclease [Moraxella catarrhalis 12P80B1] gi|326564778|gb|EGE14990.1| oligoribonuclease [Moraxella catarrhalis 46P47B1] gi|326567572|gb|EGE17687.1| oligoribonuclease [Moraxella catarrhalis BC1] gi|326569420|gb|EGE19480.1| oligoribonuclease [Moraxella catarrhalis BC8] gi|326571382|gb|EGE21397.1| oligoribonuclease [Moraxella catarrhalis BC7] gi|326575336|gb|EGE25264.1| oligoribonuclease [Moraxella catarrhalis CO72] gi|326576579|gb|EGE26486.1| oligoribonuclease [Moraxella catarrhalis 101P30B1] gi|326577403|gb|EGE27287.1| oligoribonuclease [Moraxella catarrhalis O35E] Length = 195 Score = 39.5 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD 36 D+E TGLD++ D IIEI + D Sbjct: 23 IDLEMTGLDTQQDDIIEIATIVTDD 47 >gi|308048230|ref|YP_003911796.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica DSM 9799] gi|307630420|gb|ADN74722.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica DSM 9799] Length = 181 Score = 39.5 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + + IIEI Sbjct: 11 IDLEMTGLDPEQNTIIEIA 29 >gi|295131162|ref|YP_003581825.1| Oligoribonuclease [Propionibacterium acnes SK137] gi|291377019|gb|ADE00874.1| Oligoribonuclease [Propionibacterium acnes SK137] Length = 205 Score = 39.5 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD +D +IE+ A+ V + P + + + Sbjct: 8 IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMH 63 >gi|28493373|ref|NP_787534.1| oligoribonuclease [Tropheryma whipplei str. Twist] gi|81839131|sp|Q83GA7|ORN_TROWT RecName: Full=Oligoribonuclease gi|28476414|gb|AAO44503.1| oligoribonuclease [Tropheryma whipplei str. Twist] Length = 184 Score = 39.5 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 8/21 (38%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D E TGL+ + D ++E+ V Sbjct: 13 VDCEMTGLNPERDELLEVAVV 33 >gi|71897974|ref|ZP_00680179.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1] gi|71732218|gb|EAO34273.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1] Length = 488 Score = 39.5 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 41/154 (26%), Gaps = 4/154 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGIT 66 + +D+ET G D + RI + AV + + P P A + GIT Sbjct: 15 FLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGIT 74 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + + Q + F + ++ + Sbjct: 75 PQHAQREGINEAAAFAHIAMQMTQPHTCSL--GYNTLRFDDEFIRYGLFRHFYDPYEREW 132 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 + R L + GI R Sbjct: 133 RNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAP 166 >gi|18311136|ref|NP_563070.1| exonuclease family protein [Clostridium perfringens str. 13] gi|110799345|ref|YP_696832.1| exonuclease family protein [Clostridium perfringens ATCC 13124] gi|168205611|ref|ZP_02631616.1| exonuclease family protein [Clostridium perfringens E str. JGS1987] gi|168208856|ref|ZP_02634481.1| exonuclease family protein [Clostridium perfringens B str. ATCC 3626] gi|168212809|ref|ZP_02638434.1| exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|168215781|ref|ZP_02641406.1| exonuclease family protein [Clostridium perfringens NCTC 8239] gi|169344238|ref|ZP_02865220.1| exonuclease family protein [Clostridium perfringens C str. JGS1495] gi|182623972|ref|ZP_02951760.1| exonuclease family protein [Clostridium perfringens D str. JGS1721] gi|18145819|dbj|BAB81860.1| probable DNA polymerase III epsilon chain [Clostridium perfringens str. 13] gi|110673992|gb|ABG82979.1| exonuclease family protein [Clostridium perfringens ATCC 13124] gi|169297697|gb|EDS79797.1| exonuclease family protein [Clostridium perfringens C str. JGS1495] gi|170662857|gb|EDT15540.1| exonuclease family protein [Clostridium perfringens E str. JGS1987] gi|170713011|gb|EDT25193.1| exonuclease family protein [Clostridium perfringens B str. ATCC 3626] gi|170715467|gb|EDT27649.1| exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|177910865|gb|EDT73219.1| exonuclease family protein [Clostridium perfringens D str. JGS1721] gi|182382180|gb|EDT79659.1| exonuclease family protein [Clostridium perfringens NCTC 8239] Length = 300 Score = 39.5 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 1/152 (0%) Query: 24 DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSE 82 + IIEIGA++L + + F+ ++ P+ K +P+ + + GIT++ LKD F Sbjct: 37 NEIIEIGAIKLNKFMQEVDEFKTYIKPSVFKVLNPKIIDITGITEDHLKDGIKFEDAMDN 96 Query: 83 FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN 142 DF E + NA+ I + L Sbjct: 97 LKDFIGEDDILCSWATDDIVHIVNNAKYHSYKNISWIKKYIDIQKYCTKILAHKKSLSLK 156 Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + I + H AL D+ ++V+ ++ Sbjct: 157 HALEELKIKMDKSKLHDALNDAVYTAEVFKRL 188 >gi|307177230|gb|EFN66425.1| DNA polymerase III polC-type [Camponotus floridanus] Length = 141 Score = 39.5 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 9/45 (20%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50 KM +VFD+ET+G +D I+++ A+ F V++ P Sbjct: 39 KM--VVFDLETSGRKKNSD-ILQLAAI------VQENVFSVYVTP 74 >gi|146422161|ref|XP_001487022.1| hypothetical protein PGUG_00399 [Meyerozyma guilliermondii ATCC 6260] gi|146388143|gb|EDK36301.1| hypothetical protein PGUG_00399 [Meyerozyma guilliermondii ATCC 6260] Length = 288 Score = 39.5 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 14/138 (10%), Positives = 30/138 (21%), Gaps = 5/138 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALKLHGITDEF 69 D E TGL+ D IIEI + + + ++ + + Sbjct: 83 IDCEMTGLNVYEDHIIEICCIITDGHMNIIDSQGYESTIYYPKEVLDSMNEWCVDQHGKS 142 Query: 70 LKDKPSFSSIFS---EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D E ++ N G + Sbjct: 143 GLTAKVLENTDRTLEKVQDELLEYIKRFVEPNKGIMAGNSIHMDKFFMNREFPRVIDYLH 202 Query: 127 LSIARRKHPSSRNDLNSL 144 + ++ Sbjct: 203 YRLIDVSTIMEIGHRHNP 220 >gi|262182582|ref|ZP_06042003.1| DNA polymerase III subunit epsilon [Corynebacterium aurimucosum ATCC 700975] Length = 223 Score = 39.5 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 16/36 (44%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT 43 R + FD+ETT + K RI+ V + R Sbjct: 7 RMLSFDLETTSVKPKEARIVTSALVRIDGREVDKRE 42 >gi|157373929|ref|YP_001472529.1| oligoribonuclease [Shewanella sediminis HAW-EB3] gi|157316303|gb|ABV35401.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis HAW-EB3] Length = 181 Score = 39.5 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD DR+IEI Sbjct: 11 VDLEMTGLDPSVDRVIEIA 29 >gi|47214707|emb|CAG01060.1| unnamed protein product [Tetraodon nigroviridis] Length = 228 Score = 39.5 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV 32 + FD+ETTGL S D II++ AV Sbjct: 14 VFFDLETTGLGSTCD-IIQLAAV 35 >gi|213646704|ref|ZP_03376757.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 154 Score = 39.5 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL + I+EI ++ + + P + EA+ +HGIT+E Sbjct: 20 YLFIDTETTGLG-DDAEIVEICIIDSHGFIM----LNTLIKP-TKPIPDEAIAIHGITNE 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIA 96 + P+++ I + F Sbjct: 74 MVAFAPAWTDICGAVEELFRRFGFVIYN 101 >gi|254468761|ref|ZP_05082167.1| oligoribonuclease [beta proteobacterium KB13] gi|207087571|gb|EDZ64854.1| oligoribonuclease [beta proteobacterium KB13] Length = 184 Score = 39.5 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 57/188 (30%), Gaps = 5/188 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + KN I D+E TGL+ D+IIE+ + + + V++ K S E L Sbjct: 1 MTKNNNNLIWIDMEMTGLNPVTDKIIEVAVIVTDPHLEIIAEAPVYV----IKQSNELLD 56 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH-NAKFDVGFINAELQRINKDPLDP 120 + K N E I + D I +D Sbjct: 57 SMDAWNTNTHSKSGLIDKVKHSQITENVAERELINFLSQYVDKNKSPMCGNSICQDRRFM 116 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + + L + L KR+ ++ + K A ++ I+ + + Sbjct: 117 ANYMPQLESYFHYRNLDVSVFKELAKRWKTSLLGQFKKSAKHEALADIKESIEELKFYRE 176 Query: 181 INFGFKTN 188 + Sbjct: 177 HFLRLDSE 184 >gi|163814998|ref|ZP_02206385.1| hypothetical protein COPEUT_01151 [Coprococcus eutactus ATCC 27759] gi|158449681|gb|EDP26676.1| hypothetical protein COPEUT_01151 [Coprococcus eutactus ATCC 27759] Length = 326 Score = 39.5 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 54/223 (24%), Gaps = 16/223 (7%) Query: 6 KMRKIVFDIETTGL---DSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGR 53 M IV D+E IIEIGAV++ + + P Sbjct: 2 TMNYIVMDLE----WNQSYNGHMGEHPRMPFEIIEIGAVKVDKNLNIIDEYSSLIKPKIY 57 Query: 54 KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 K ++ DE + + + N + Sbjct: 58 KKLHSKIRTILNYDENDLNLGRGFKEVCSEFLEWCGDNYIFCTWGPMDLTELQTNMDFYY 117 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P + ++ SI S + ++ + ++ + + Sbjct: 118 MDKLPRPLKFLNLQSIYASITNQSGSPQTMSKLEKAVSEMNIPENEPFHTALNDARYTAL 177 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 +M N + D + + K +RI Sbjct: 178 VMKEMKVKNINQLYSFDLYIAPKDKAEEIEEFHNNQYEYISRI 220 >gi|318057465|ref|ZP_07976188.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG] gi|318076919|ref|ZP_07984251.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF] Length = 244 Score = 39.5 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 FD+ETTG+D + DRI+ V Sbjct: 12 FDLETTGIDVEADRIVT-ACV 31 >gi|266624851|ref|ZP_06117786.1| exonuclease family protein [Clostridium hathewayi DSM 13479] gi|288863268|gb|EFC95566.1| exonuclease family protein [Clostridium hathewayi DSM 13479] Length = 330 Score = 39.5 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 67/235 (28%), Gaps = 26/235 (11%) Query: 7 MR-KIVFDIE----------TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M+ IV D+E T +D IIEIGAV L + K F+ + P R Sbjct: 1 MKNYIVLDLEWNQSPDGKEGT--IDHFPFEIIEIGAVRLDEERKEIGEFRRLIRP--RVY 56 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 ++ +T + + F F E + + + + Sbjct: 57 PQMHYRISEVTHMDMAELERNGETFETVIRDFLEWCGDDCIFCTWGSMDLTELQRNMVYY 116 Query: 116 DPLDPS-----RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 P + + + + R H AL D+H V Sbjct: 117 GVEIPFDKPLLYYDVQKLYSLLQGDGKQKQSLDITVEELGIREDRPFHRALDDAHYTGRV 176 Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI--TKEELDE 223 M + + + + E K+ + + +R TKEE Sbjct: 177 MAAM---DFERVLEYWSTDYYRLPESKEEEVYL-VFPGYSKYISRAFETKEEAIA 227 >gi|54026013|ref|YP_120255.1| DNA polymerase III subunit epsilon [Nocardia farcinica IFM 10152] gi|54017521|dbj|BAD58891.1| putative DNA polymerase [Nocardia farcinica IFM 10152] Length = 229 Score = 39.5 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 2/81 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD+ETT D + R++ + + R + P+ + + Sbjct: 10 AFDLETTSADPHSARVVTASIIRVDGGDVRARNW--IANPHIPIPAEATEIHGYTDEYVQ 67 Query: 71 KDKPSFSSIFSEFWDFFNEQN 91 K + + +E + Sbjct: 68 KHGRPHADVIAEVTAELHACW 88 >gi|194745839|ref|XP_001955392.1| GF18739 [Drosophila ananassae] gi|190628429|gb|EDV43953.1| GF18739 [Drosophila ananassae] Length = 187 Score = 39.5 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+E TGLD + D+I+E+ V P N P+ + + Sbjct: 18 DLEMTGLDFEKDKILELACVITDKDLNVKSE-----GPCFAINHPQEVYDNMNEWCMKHH 72 Query: 73 K 73 Sbjct: 73 Y 73 >gi|297584199|ref|YP_003699979.1| DNA polymerase III subunit epsilon [Bacillus selenitireducens MLS10] gi|297142656|gb|ADH99413.1| DNA polymerase III, epsilon subunit [Bacillus selenitireducens MLS10] Length = 242 Score = 39.5 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 64/167 (38%), Gaps = 8/167 (4%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTG D ++ IGA +L + F + P + S L G+T E Sbjct: 62 VFDLETTGFFCNLGDEVLAIGATKLNRNRIDFPEQFYEVIEP-VKPMSAFVSNLTGMTHE 120 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +F F F + + L + ID Sbjct: 121 EVTAGLAFPEA---FSKFLEFSKGSILVAHPASFDVQFLKILADRWRLHGYDPLYIDQYQ 177 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ +P RN L+ L K Y I +H AL D+++ + V+ ++ Sbjct: 178 LAKSLYPRKRNSLDELIKLYQIE--TSGRHHALADAYMTATVFHHLL 222 >gi|320094495|ref|ZP_08026269.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 178 str. F0338] gi|319978573|gb|EFW10142.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 178 str. F0338] Length = 238 Score = 39.5 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 13/27 (48%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS 38 FD ETTG DR++ V ++ Sbjct: 11 FDTETTGTSPFKDRLVTAALVLRVEGR 37 >gi|300024532|ref|YP_003757143.1| exonuclease RNase T and DNA polymerase III [Hyphomicrobium denitrificans ATCC 51888] gi|299526353|gb|ADJ24822.1| Exonuclease RNase T and DNA polymerase III [Hyphomicrobium denitrificans ATCC 51888] Length = 225 Score = 39.5 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 6/29 (20%) Query: 8 RKIVFDIETTGL------DSKNDRIIEIG 30 R + D ETTGL +DR+I IG Sbjct: 23 RILFVDTETTGLRRPSAASEDHDRVISIG 51 >gi|307191510|gb|EFN75025.1| Three prime repair exonuclease 2 [Camponotus floridanus] Length = 324 Score = 39.5 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 41/141 (29%), Gaps = 11/141 (7%) Query: 9 KIVFDIETTGLDSKN--DRIIEIGAVEL-------LDYSKTNRTFQVFLCP--NGRKNSP 57 I FD+ETTGL + RI EI + + + + R Q + P + P Sbjct: 6 FIFFDLETTGLIQEKLMPRITEIALIAVGRESICNSNKASLPRVLQKLILPINPQKIIPP 65 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + + ++ + SF E F ++ I A F + + Sbjct: 66 NVEYITKLFNDEMLLLQSFECEVYELIMRFLQRLTPPICFAAHNGKSFYYPIFFQELERT 125 Query: 118 LDPSRIIDTLSIARRKHPSSR 138 + Sbjct: 126 NKVLDDKILCIDTWKMFKDFF 146 >gi|291528936|emb|CBK94522.1| DNA polymerase family B, exonuclease domain [Eubacterium rectale M104/1] Length = 365 Score = 39.5 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 6/46 (13%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIE-IGAV-ELLDYSKTNRTF 44 + ++N M FDIETTG I+ IG + + ++ F Sbjct: 20 IFKENTM---FFDIETTGFSPVK-AIVYMIGCARRIKNRIVIDQYF 61 >gi|289426433|ref|ZP_06428176.1| exonuclease [Propionibacterium acnes SK187] gi|289153161|gb|EFD01879.1| exonuclease [Propionibacterium acnes SK187] Length = 205 Score = 39.5 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD +D +IE+ A+ V + P + + + Sbjct: 8 IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMH 63 >gi|238924002|ref|YP_002937518.1| possible elongation subunit of DNA-dependent DNA polymerase [Eubacterium rectale ATCC 33656] gi|238875677|gb|ACR75384.1| possible elongation subunit of DNA-dependent DNA polymerase [Eubacterium rectale ATCC 33656] gi|291524743|emb|CBK90330.1| DNA polymerase family B, exonuclease domain [Eubacterium rectale DSM 17629] Length = 365 Score = 39.5 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 6/46 (13%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIE-IGAV-ELLDYSKTNRTF 44 + ++N M FDIETTG I+ IG + + ++ F Sbjct: 20 IFKENTM---FFDIETTGFSPVK-AIVYMIGCARRIKNRIVIDQYF 61 >gi|168180335|ref|ZP_02614999.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum NCTC 2916] gi|226949002|ref|YP_002804093.1| putative DNA polymerase III subunit epsilon [Clostridium botulinum A2 str. Kyoto] gi|182668792|gb|EDT80770.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum NCTC 2916] gi|226843902|gb|ACO86568.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A2 str. Kyoto] Length = 195 Score = 39.5 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRT 43 M+KI D ETTGL+ II++ V +++ + Sbjct: 1 MKKIFIDTETTGLEPG--EIIQLTYCVCDINFRGEEKV 36 >gi|42522865|ref|NP_968245.1| oligoribonuclease [Bdellovibrio bacteriovorus HD100] gi|39574061|emb|CAE79238.1| Oligoribonuclease [Bdellovibrio bacteriovorus HD100] Length = 175 Score = 39.5 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 21/55 (38%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 D+E TGLD + + IIE+ A+ K TF+ + + Sbjct: 7 IDMEMTGLDVEKEVIIEVAAIVTDLNFKELETFETVVKQPQKYLDSMDAWNTEHH 61 >gi|227494840|ref|ZP_03925156.1| DNA polymerase III subunit epsilon [Actinomyces coleocanis DSM 15436] gi|226831292|gb|EEH63675.1| DNA polymerase III subunit epsilon [Actinomyces coleocanis DSM 15436] Length = 232 Score = 39.5 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 FD+ETTG+D+ DRI+ + E+ S+ + P Sbjct: 11 FDLETTGVDTARDRIVT-ASYEVRCGSEVLEQVTLLFNPG 49 >gi|50287235|ref|XP_446047.1| hypothetical protein [Candida glabrata CBS 138] gi|49525354|emb|CAG58971.1| unnamed protein product [Candida glabrata] Length = 250 Score = 39.5 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 16/36 (44%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD 36 M N + D E TGLD ND IIEI + Sbjct: 32 METSNTKPLVWIDCEMTGLDHVNDEIIEICCIVTDG 67 >gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5] Length = 958 Score = 39.5 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 11/16 (68%), Positives = 12/16 (75%) Query: 12 FDIETTGLDSKNDRII 27 FD ETTG D NDRI+ Sbjct: 391 FDTETTGFDIFNDRIV 406 >gi|149195011|ref|ZP_01872104.1| DNA polymerase III, epsilon chain [Caminibacter mediatlanticus TB-2] gi|149134932|gb|EDM23415.1| DNA polymerase III, epsilon chain [Caminibacter mediatlanticus TB-2] Length = 274 Score = 39.5 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 60/174 (34%), Gaps = 8/174 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD ETT D II V S + L P + S EA ++H I E L Sbjct: 106 VFDTETT--DIYG-YIISYAFVIQDMDSLETKEIYELLNPKAK-ISEEAYEVHKIKQEDL 161 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---ELQRINKDPLDPSRIIDTL 127 +DKP+F D FN + + HN FD G + + P Sbjct: 162 EDKPTFEEKKEYILDLFNSVDMI-VGHNVFFDFGVLKRELERAKHFPNIIEVPIFDTMFY 220 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 S + + + H AL D + V+ +++ G ++ Sbjct: 221 SWDIVVLDKKKQPRLEEAVAFFLGPQKAQYHNALEDVKMTLKVFNRLLEEGKKL 274 >gi|192360800|ref|YP_001983571.1| oligoribonuclease [Cellvibrio japonicus Ueda107] gi|190686965|gb|ACE84643.1| oligoribonuclease [Cellvibrio japonicus Ueda107] Length = 185 Score = 39.5 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 12/19 (63%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD D IIEI Sbjct: 14 IDLEMTGLDPDKDVIIEIA 32 >gi|238789017|ref|ZP_04632806.1| Exodeoxyribonuclease 10 [Yersinia frederiksenii ATCC 33641] gi|238722781|gb|EEQ14432.1| Exodeoxyribonuclease 10 [Yersinia frederiksenii ATCC 33641] Length = 219 Score = 39.5 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 70/188 (37%), Gaps = 20/188 (10%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D ET GL I+EI +++++D + + P+ R S +A+ +H IT Sbjct: 1 MYFRVIDTETCGL---EGGIVEIASIDVVDGVLS-NPMSDLVSPD-RPISIDAMVIHHIT 55 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ ++ KP + ++ + ++AHNA FD G + + I T Sbjct: 56 EDMVEGKPRIAVAVRKYQ-----GSPYYVAHNAPFDRGVLPE----------MGGQWICT 100 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +AR +P ++ L + +S + + + Sbjct: 101 LKLARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIMQDSGWNAD 160 Query: 187 TNEDRFFK 194 + + Sbjct: 161 QMAEITQQ 168 >gi|194226477|ref|XP_001915858.1| PREDICTED: similar to histone mRNA 3 end-specific exonuclease [Equus caballus] Length = 349 Score = 39.5 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G + IIE V L ++ + TFQ ++ P S + L G Sbjct: 132 IIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINLTG 191 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + + D+ + + + + + Sbjct: 192 ITQDLVDGADTFPQVLRKVVDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCRLSRLKYP 251 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G+ R H L DS ++ + ++M+ Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAVRML 310 Query: 176 VGGSQINFG 184 G ++ Sbjct: 311 QDGCELRIN 319 >gi|161378162|ref|NP_299304.2| exonuclease I [Xylella fastidiosa 9a5c] Length = 478 Score = 39.5 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 43/155 (27%), Gaps = 4/155 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGI 65 + +D+ET G D + RI + AV + + + P P+A + GI Sbjct: 4 NFLFYDLETFGQDPRRTRIAQFAAVRTDTELNVIEEPISFLVKPADDLLPSPDATLITGI 63 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + + + + + + F + ++ + Sbjct: 64 TPQHAQREGINEAAAFTHIAMQMTRPHTCSL--GYNTLRFDDEFIRYGLFRHFYDPYERE 121 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 + R L + GI R Sbjct: 122 WRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAP 156 >gi|148379717|ref|YP_001254258.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A str. ATCC 3502] gi|153933415|ref|YP_001384014.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A str. ATCC 19397] gi|153934824|ref|YP_001387556.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A str. Hall] gi|148289201|emb|CAL83296.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502] gi|152929459|gb|ABS34959.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A str. ATCC 19397] gi|152930738|gb|ABS36237.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A str. Hall] gi|322805994|emb|CBZ03561.1| DNA polymerase III epsilon subunit [Clostridium botulinum H04402 065] Length = 195 Score = 39.5 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRT 43 M+KI D ETTGL+ II++ V +++ + Sbjct: 1 MKKIFIDTETTGLEPG--EIIQLTYCVCDINFRGEEKV 36 >gi|84000359|ref|NP_001033281.1| three prime histone mRNA exonuclease 1 [Bos taurus] gi|81673840|gb|AAI09682.1| Three prime histone mRNA exonuclease 1 [Bos taurus] gi|296472395|gb|DAA14510.1| three prime histone mRNA exonuclease 1 [Bos taurus] Length = 349 Score = 39.5 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G + IIE V L ++ + TFQ ++ P S + L G Sbjct: 132 IIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINLTG 191 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + + D+ + + + + + Sbjct: 192 ITQDQVDKADTFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRLKYP 251 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G+ R H L DS ++ + ++M+ Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAVRML 310 Query: 176 VGGSQINFG 184 G ++ Sbjct: 311 QDGCELRVN 319 >gi|307700293|ref|ZP_07637333.1| exonuclease [Mobiluncus mulieris FB024-16] gi|307614504|gb|EFN93733.1| exonuclease [Mobiluncus mulieris FB024-16] Length = 141 Score = 39.5 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 7/121 (5%) Query: 7 MRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLH 63 MR+ + D ET + + +G V K + ++ L P+ +P + +H Sbjct: 1 MREFVAIDFET--ANEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWVH 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT E ++D P +S I + F + +AHN FD ++ + + R Sbjct: 59 GITSEDVQDAPQWSDIADQVMTFIGD--RPIVAHNMAFDGYVLSDLASLYGTEEIPNRRF 116 Query: 124 I 124 Sbjct: 117 C 117 >gi|296221910|ref|XP_002756956.1| PREDICTED: 3'-5' exoribonuclease 1-like [Callithrix jacchus] Length = 348 Score = 39.5 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGR-KNSPEALKLHG 64 + D E T G + IIE V L ++ + TFQ ++ P + S + L G Sbjct: 131 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTRLSDFCISLTG 190 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + + D+ + + + + + Sbjct: 191 ITQDQVDRADTFPHVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQISRIKYP 250 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G+ R H L DS ++ + ++M+ Sbjct: 251 SFAKKWINIRKSYGNFYKVPRSQTKLAIMLEKLGMDYDGRP-HCGLDDSKNIARIAVRML 309 Query: 176 VGGSQINFG 184 G ++ Sbjct: 310 QDGCELRIN 318 >gi|255022249|ref|ZP_05294243.1| Ribonuclease T [Acidithiobacillus caldus ATCC 51756] gi|254968305|gb|EET25873.1| Ribonuclease T [Acidithiobacillus caldus ATCC 51756] Length = 211 Score = 39.5 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 70/187 (37%), Gaps = 12/187 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGI 65 +V D+E+ G ++ ++EI A+ + + + P G + P AL +GI Sbjct: 15 VVVDVESAGFEAHRHALLEIAAIVITHADGQWQLGPRHHFHVEPFAGAELDPAALAFNGI 74 Query: 66 TDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + + + + + A + HNA FD+ F++A +R+ Sbjct: 75 DPYQPLRGALPEAEVFGTLYRALRKAVKEAHCRRAVLVGHNAHFDLSFLHAAEKRLRLKN 134 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +++ + L ++ G+ R H AL D+ ++++ ++ Sbjct: 135 SPFHPFSVIDTVSLAALALAETVLAKAVQKAGLAWDGREAHSALYDAERTAELFCWIVNR 194 Query: 178 GSQINFG 184 ++ Sbjct: 195 YDRLEDD 201 >gi|227875810|ref|ZP_03993936.1| possible DNA-directed DNA polymerase III [Mobiluncus mulieris ATCC 35243] gi|227843558|gb|EEJ53741.1| possible DNA-directed DNA polymerase III [Mobiluncus mulieris ATCC 35243] Length = 143 Score = 39.5 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 7/121 (5%) Query: 7 MRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLH 63 MR+ + D ET + + +G V K + ++ L P+ +P + +H Sbjct: 3 MREFVAIDFET--ANEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWVH 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT E ++D P +S I + F + +AHN FD ++ + + R Sbjct: 61 GITSEDVQDAPQWSDIADQVMTFIGD--RPIVAHNMAFDGYVLSDLASLYGTEEIPNRRF 118 Query: 124 I 124 Sbjct: 119 C 119 >gi|119776164|ref|YP_928904.1| oligoribonuclease [Shewanella amazonensis SB2B] gi|166216584|sp|A1SA28|ORN_SHEAM RecName: Full=Oligoribonuclease gi|119768664|gb|ABM01235.1| oligoribonuclease [Shewanella amazonensis SB2B] Length = 181 Score = 39.5 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ + DRI+EI Sbjct: 11 IDLEMTGLEPEVDRILEIA 29 >gi|71066107|ref|YP_264834.1| oligoribonuclease [Psychrobacter arcticus 273-4] gi|71039092|gb|AAZ19400.1| putative oligoribonuclease protein [Psychrobacter arcticus 273-4] Length = 195 Score = 39.5 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD+ ND IIEI V Sbjct: 23 IDLEMTGLDTLNDEIIEIATV 43 >gi|315651981|ref|ZP_07904983.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315485810|gb|EFU76190.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 358 Score = 39.5 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 21/37 (56%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44 + + FDIETTGL KN + IG + + + + + + Sbjct: 24 KLLFFDIETTGLSPKNSNLYLIGCINVDNDNIIFKQW 60 >gi|315604595|ref|ZP_07879658.1| oligoribonuclease [Actinomyces sp. oral taxon 180 str. F0310] gi|315313607|gb|EFU61661.1| oligoribonuclease [Actinomyces sp. oral taxon 180 str. F0310] Length = 213 Score = 39.5 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPN 51 D E TGLD ND +IE+ V + V + P Sbjct: 14 IDCEMTGLDVANDALIEVAVVVTDGDLSIVDPGMDVLITPP 54 >gi|308177366|ref|YP_003916772.1| oligoribonuclease [Arthrobacter arilaitensis Re117] gi|307744829|emb|CBT75801.1| putative oligoribonuclease [Arthrobacter arilaitensis Re117] Length = 203 Score = 39.5 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNG 52 + N + + D E TGLD ND +IE+ + D + QV + P Sbjct: 1 MASNSEKIVWIDCEMTGLDLVNDALIEVAVLITDSDLQIVDEGIQVVIKPEP 52 >gi|183983834|ref|YP_001852125.1| oligoribonuclease Orn [Mycobacterium marinum M] gi|183177160|gb|ACC42270.1| oligoribonuclease Orn [Mycobacterium marinum M] Length = 215 Score = 39.5 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%) Query: 7 MRK--IVFDIETTGLDSKNDRIIEIGAV 32 MR+ + D E TGLD +D++IEI A+ Sbjct: 1 MREELVWIDCEMTGLDLGSDKLIEIAAL 28 >gi|154148582|ref|YP_001406342.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC BAA-381] gi|153804591|gb|ABS51598.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC BAA-381] Length = 262 Score = 39.5 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 6/96 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 DIET G +IIEIGA+++ + TF+ F+ ++L GI L Sbjct: 77 FVDIETNGG-IDKGQIIEIGAIKVRA-KEILNTFKTFV--YASNIPENIVELTGIHTNDL 132 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 K+ P S++ F ++ ++AHN KFD GFI Sbjct: 133 KNAPHLSNVLENF--RLFLGDSVFVAHNVKFDYGFI 166 >gi|170746460|ref|YP_001752720.1| exonuclease RNase T and DNA polymerase III [Methylobacterium radiotolerans JCM 2831] gi|170652982|gb|ACB22037.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium radiotolerans JCM 2831] Length = 289 Score = 39.5 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 8/171 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + + D +G + D R + P + +P +++HGI Sbjct: 1 MTVLALDFET--ANERRDSACAVGLAWIADGRVVRRESH-LIRPPEMRFAPGNIRVHGIL 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + DKP F+++ + + +AHNA FD+G + A L R D + + Sbjct: 58 PADVADKPDFAAVMAPYLGDL--ARGLILAHNASFDIGVLRAGLTRAGLPVPDLAYLCTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R L + +R GI H A D++ +++ + M Sbjct: 116 QVSRRVFPAPEGCGLGKVARRLGIRF---EHHDAGEDAYACAEIALAAMRE 163 >gi|170760682|ref|YP_001787078.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A3 str. Loch Maree] gi|169407671|gb|ACA56082.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A3 str. Loch Maree] Length = 195 Score = 39.5 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRT 43 M+KI D ETTGL+ II++ V +++ + Sbjct: 1 MKKIFIDTETTGLEPG--EIIQLTYCVCDINFKGEEKV 36 >gi|170756602|ref|YP_001781306.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum B1 str. Okra] gi|169121814|gb|ACA45650.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum B1 str. Okra] Length = 195 Score = 39.5 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEI 29 M+KI D ETTGL+ II++ Sbjct: 1 MKKIFIDTETTGLEPG--EIIQL 21 >gi|156844039|ref|XP_001645084.1| hypothetical protein Kpol_1035p39 [Vanderwaltozyma polyspora DSM 70294] gi|156115740|gb|EDO17226.1| hypothetical protein Kpol_1035p39 [Vanderwaltozyma polyspora DSM 70294] Length = 263 Score = 39.5 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 8/63 (12%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNGRKNSPEALKLH 63 D E TGL+ ND IIEI + + ++ + + S Sbjct: 46 IDCEMTGLNHVNDHIIEICCIVTDGDMNVVKDPGTGEDNVYESVIHYDEEVMSKMNEWCI 105 Query: 64 GIT 66 Sbjct: 106 DQH 108 >gi|158255560|dbj|BAF83751.1| unnamed protein product [Homo sapiens] gi|261858590|dbj|BAI45817.1| exoribonuclease 1 [synthetic construct] Length = 349 Score = 39.5 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G + IIE V L ++ + TFQ ++ P S + L G Sbjct: 132 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTG 191 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQN---------AEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + + D+ + + + + + Sbjct: 192 ITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYP 251 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G+ R H L DS ++ + ++M+ Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HCGLDDSKNIARIAVRML 310 Query: 176 VGGSQINFG 184 G ++ Sbjct: 311 QDGCELRIN 319 >gi|31543184|ref|NP_699163.2| 3'-5' exoribonuclease 1 [Homo sapiens] gi|45476938|sp|Q8IV48|ERI1_HUMAN RecName: Full=3'-5' exoribonuclease 1; AltName: Full=3'-5' exonuclease ERI1; AltName: Full=Eri-1 homolog; AltName: Full=Histone mRNA 3'-end-specific exoribonuclease; AltName: Full=Histone mRNA 3'-exonuclease 1; AltName: Full=Protein 3'hExo; Short=HEXO gi|23271401|gb|AAH35279.1| Exoribonuclease 1 [Homo sapiens] gi|33520761|gb|AAQ21219.1| 3' exoribonuclease [Homo sapiens] gi|119585973|gb|EAW65569.1| three prime histone mRNA exonuclease 1, isoform CRA_b [Homo sapiens] gi|119585974|gb|EAW65570.1| three prime histone mRNA exonuclease 1, isoform CRA_b [Homo sapiens] gi|123979876|gb|ABM81767.1| three prime histone mRNA exonuclease 1 [synthetic construct] gi|123994641|gb|ABM84922.1| three prime histone mRNA exonuclease 1 [synthetic construct] Length = 349 Score = 39.5 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G + IIE V L ++ + TFQ ++ P S + L G Sbjct: 132 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTG 191 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQN---------AEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + + D+ + + + + + Sbjct: 192 ITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYP 251 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G+ R H L DS ++ + ++M+ Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HCGLDDSKNIARIAVRML 310 Query: 176 VGGSQINFG 184 G ++ Sbjct: 311 QDGCELRIN 319 >gi|311695397|gb|ADP98270.1| oligoribonuclease [marine bacterium HP15] Length = 180 Score = 39.5 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M N R + D+E TGLD + +RIIE+ Sbjct: 1 MAESN--RLVWIDLEMTGLDPEKERIIEMA 28 >gi|300932778|ref|ZP_07148034.1| oligoribonuclease [Corynebacterium resistens DSM 45100] Length = 215 Score = 39.5 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 13/25 (52%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D E TGLD ++EI + Sbjct: 18 RIVWVDCEMTGLDPDQHVLVEIAVI 42 >gi|261254064|ref|ZP_05946637.1| oligoribonuclease [Vibrio orientalis CIP 102891] gi|260937455|gb|EEX93444.1| oligoribonuclease [Vibrio orientalis CIP 102891] Length = 181 Score = 39.5 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + ++IEI Sbjct: 11 IDLEMTGLDPETHKVIEIA 29 >gi|289811457|ref|ZP_06542086.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 70 Score = 39.5 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + D ET GL I+EI +V+++D + + P+ Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPDRPITPQAMAIH 51 >gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251] gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251] Length = 902 Score = 39.5 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 10/18 (55%), Positives = 14/18 (77%) Query: 10 IVFDIETTGLDSKNDRII 27 + FD ETTGLD +ND ++ Sbjct: 334 VAFDTETTGLDYENDSLV 351 >gi|93006558|ref|YP_580995.1| oligoribonuclease [Psychrobacter cryohalolentis K5] gi|92394236|gb|ABE75511.1| Exonuclease [Psychrobacter cryohalolentis K5] Length = 195 Score = 39.5 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD+ ND IIEI V Sbjct: 23 IDLEMTGLDTLNDEIIEIATV 43 >gi|290968085|ref|ZP_06559634.1| DNA polymerase III subunit epsilon domain protein [Megasphaera genomosp. type_1 str. 28L] gi|290781991|gb|EFD94570.1| DNA polymerase III subunit epsilon domain protein [Megasphaera genomosp. type_1 str. 28L] Length = 184 Score = 39.5 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 5/146 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D ET + + + AV++ + + P P + +HGIT E + Sbjct: 6 AIDFET--ANKYANSACSLAAVQMRGTQCIQEQY-SLIKPPFMTFEPTNIAIHGITPEQV 62 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + + +F ++ F + AH A FD + + L+ + D + + Sbjct: 63 RQEKNFLQLWPLFKPCMEK--KILAAHYAVFDTRVLRSTLKTYHLDVPAATYVCTVQISR 120 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS 156 + + L+++ G + H Sbjct: 121 KVWPQLPNHKLDTVANMLGYSFHHHH 146 >gi|270158349|ref|ZP_06187006.1| ribonuclease T [Legionella longbeachae D-4968] gi|289163409|ref|YP_003453547.1| ribonuclease T [Legionella longbeachae NSW150] gi|269990374|gb|EEZ96628.1| ribonuclease T [Legionella longbeachae D-4968] gi|288856582|emb|CBJ10387.1| ribonuclease T [Legionella longbeachae NSW150] Length = 205 Score = 39.5 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 17/196 (8%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIE--IGAVELLDYSKT--NRTFQVFLCP-NG 52 M KN+ R +V D+ET G++ + + ++E I + + D K +++ + P +G Sbjct: 9 MNIKNRFRGFLPVVVDVETAGVNPQKNALLEMCIVLILMDDQGKFYRGKSYFEHILPFSG 68 Query: 53 RKNSPEALKLHGITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 + P++L+ + I + F Q A + HNA FD+ Sbjct: 69 SELDPKSLEFNQIDPFQPLRFAIDEKTALENLFHPIFAALKIFQCQRAVLVGHNAWFDLL 128 Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 FI ++R + + L + GI + H A+ D+ Sbjct: 129 FIKEAIKRTGVKSP-FHAFTCFDTATLGGFIYGQTVLAKAAQAAGIAFDAQEAHSAIYDA 187 Query: 165 HLLSDVYIKMMVGGSQ 180 +D++ M Q Sbjct: 188 EKTADLFCHMANLWQQ 203 >gi|168184675|ref|ZP_02619339.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum Bf] gi|237795168|ref|YP_002862720.1| putative DNA polymerase III subunit epsilon [Clostridium botulinum Ba4 str. 657] gi|182672241|gb|EDT84202.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum Bf] gi|229261088|gb|ACQ52121.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum Ba4 str. 657] Length = 195 Score = 39.5 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRT 43 M+KI D ETTGL+ II++ V +++ + Sbjct: 1 MKKIFIDTETTGLEPG--EIIQLTYCVCDINFRGEEKV 36 >gi|156546675|ref|XP_001603963.1| PREDICTED: similar to ENSANGP00000010833 [Nasonia vitripennis] Length = 185 Score = 39.5 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 39/115 (33%), Gaps = 3/115 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I D+E TGL+ D+I+E+ ++ D + FQ+ + + Sbjct: 11 RIIWIDLEMTGLNVMQDKILEVASIITDDQLNIVSDEFQMVIHQSEDVFETMIPWCQEQH 70 Query: 67 DEF--LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 ++ ++ + + +++ HN G + + + Sbjct: 71 NKTGLIEASRNSIFNEEMAEEELIRFFRKYVPHNTCPLAGSCLYMDRAFLQQHMP 125 >gi|145641462|ref|ZP_01797040.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021] gi|145273753|gb|EDK13621.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.4-21] Length = 59 Score = 39.5 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 194 KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRYISSN 244 +E+ ++ + T +EL H + ++ L K N +WD+ +N Sbjct: 2 QEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMLNKKSGNNCLWDKRFGNN 56 >gi|110597891|ref|ZP_01386173.1| Exonuclease [Chlorobium ferrooxidans DSM 13031] gi|110340468|gb|EAT58954.1| Exonuclease [Chlorobium ferrooxidans DSM 13031] Length = 189 Score = 39.5 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 65/187 (34%), Gaps = 18/187 (9%) Query: 9 KIVFDIETTGLD-----SKND-----RIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSP 57 + FD E+TGL D R++++ + ++T + + P G P Sbjct: 2 YLFFDTESTGLPRNWKAPVTDLGNWLRLVQLAYLSFDGVGNQTG-SGNFIVRPEGFSIPP 60 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 EA +HGI+ + E + E+ +AHN FD + AE R+ Sbjct: 61 EAAAIHGISTAQALAEGLELKRVMEEFYAEVERAEWLVAHNMSFDEKILGAEFLRLGMPN 120 Query: 118 L------DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + A + ++ S + + H A +D + + + Sbjct: 121 ILLAKKKICTMQESVDFCAIKNSYGNKWPKLSELHQKLFNCDFQESHNASVDVAVTAKCF 180 Query: 172 IKMMVGG 178 ++ G Sbjct: 181 WELKRLG 187 >gi|9107140|gb|AAF84824.1|AE004021_1 exodeoxyribonuclease I [Xylella fastidiosa 9a5c] Length = 494 Score = 39.5 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 43/155 (27%), Gaps = 4/155 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGI 65 + +D+ET G D + RI + AV + + + P P+A + GI Sbjct: 20 NFLFYDLETFGQDPRRTRIAQFAAVRTDTELNVIEEPISFLVKPADDLLPSPDATLITGI 79 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + + + + + + F + ++ + Sbjct: 80 TPQHAQREGINEAAAFTHIAMQMTRPHTCSL--GYNTLRFDDEFIRYGLFRHFYDPYERE 137 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 + R L + GI R Sbjct: 138 WRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAP 172 >gi|237785839|ref|YP_002906544.1| DNA polymerase III subunit epsilon [Corynebacterium kroppenstedtii DSM 44385] gi|237758751|gb|ACR18001.1| DNA polymerase III, epsilon subunit [Corynebacterium kroppenstedtii DSM 44385] Length = 236 Score = 39.5 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 2/80 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG + RI+ V + + + ++ P + T+ + Sbjct: 21 FDLETTGTNPLQARIVTSALVSIHGG--SANSTELLADPGIEIPESASQIHGISTEYARE 78 Query: 72 DKPSFSSIFSEFWDFFNEQN 91 + + + Sbjct: 79 HGEPHDDVLHKTIRAIYDGW 98 >gi|152941094|gb|ABS44984.1| histone mRNA 3' end-specific exonuclease [Bos taurus] Length = 349 Score = 39.5 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G + IIE V L ++ + TFQ ++ P S + L G Sbjct: 132 IIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINLTG 191 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + + D+ + + + + + Sbjct: 192 ITQDQVDKADTFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRLKYP 251 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G+ R H L DS ++ + ++M+ Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HSGLDDSKNIARIAVRML 310 Query: 176 VGGSQINFG 184 G ++ Sbjct: 311 QDGCELRVN 319 >gi|258515120|ref|YP_003191342.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771] gi|257778825|gb|ACV62719.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771] Length = 755 Score = 39.1 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 9 KIVFDIETTGLDSKNDRII 27 +I D ETTGLD ND I+ Sbjct: 139 EIAVDTETTGLDVYNDVIV 157 >gi|150401941|ref|YP_001329235.1| exonuclease RNase T and DNA polymerase III [Methanococcus maripaludis C7] gi|150032971|gb|ABR65084.1| Exonuclease RNase T and DNA polymerase III [Methanococcus maripaludis C7] Length = 189 Score = 39.1 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 48/141 (34%), Gaps = 6/141 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ETTGL+ I +I + D + ++ N + +++ I Sbjct: 1 MK-VFLDTETTGLEPGQ--IAQISYIISDDDLNIQKAENIYFKVNSMETKAQSVHGLSIE 57 Query: 67 D-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 E L D SF+ ++ D I HN FD F+N+E R + Sbjct: 58 KLELLSDGKSFTDHANQILDDI--DQKILICHNVPFDYKFLNSEFVRCGIEYDPKKFCTM 115 Query: 126 TLSIARRKHPSSRNDLNSLCK 146 P+ + Sbjct: 116 NHYTNLCGIPNPYRPGYKWPR 136 >gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414] gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414] Length = 879 Score = 39.1 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 49/182 (26%), Gaps = 20/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD ETTGLD+K +I+ F + N P G+ ++ Sbjct: 319 IAFDTETTGLDAKEAKIV---------------GFSFCMNENEAFYVPLTHNYLGVGEQI 363 Query: 70 -----LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 K + F + + N + + + K+P + Sbjct: 364 SLQSAKKAIELIFNHFVIGHNLKYDFKIIQNNFNLTLPQEYADTMILAWLKNPSLRVNMD 423 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 D L + + ++ A D+++ Y+ + Sbjct: 424 DLALRLFNYETLHFESLVKKGENFTSVELEKACKYAAEDAYITLRFYLYFLKNLETPLLE 483 Query: 185 FK 186 Sbjct: 484 LA 485 >gi|154247607|ref|YP_001418565.1| exonuclease RNase T and DNA polymerase III [Xanthobacter autotrophicus Py2] gi|154161692|gb|ABS68908.1| Exonuclease RNase T and DNA polymerase III [Xanthobacter autotrophicus Py2] Length = 200 Score = 39.1 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 59/191 (30%), Gaps = 29/191 (15%) Query: 11 VFDIETTGLDSKNDR----------IIEIGAVELLDYSKTNRTFQVFLCP---NGRKNSP 57 +D ETTG +DR I+++ A D + F + P +G Sbjct: 4 FWDTETTGF--FDDRLPVDHKAQPYIVQLAAQLCEDDGRPIAGFSFIIDPGIGDGINIPE 61 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--- 114 A +HGIT+E + + ++ AHNAKFD G + R Sbjct: 62 RAAAVHGITNERAVQFGVSTEFALSAFTHLYQRADMVCAHNAKFDKGVTETAISRHYGRV 121 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL-----------CKRYGITISHRSKHGALLD 163 P + P + + C R+ H A++D Sbjct: 122 MPLRKPVFCTMESATPIINLPPTDRMRAAGFNKPKPPKLEECIRHFFGEDLDGAHDAMVD 181 Query: 164 SHLLSDVYIKM 174 VY + Sbjct: 182 VAACRRVYFHL 192 >gi|253583228|ref|ZP_04860426.1| exonuclease RNase T and DNA polymerase III [Fusobacterium varium ATCC 27725] gi|251833800|gb|EES62363.1| exonuclease RNase T and DNA polymerase III [Fusobacterium varium ATCC 27725] Length = 188 Score = 39.1 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 59/191 (30%), Gaps = 24/191 (12%) Query: 7 MRKIVFDIETTGLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP--------------- 50 M+ + D ET G+ ++ +I++ G V++ + F ++ P Sbjct: 1 MKILFIDTETGGI-TEKSALIQLSGIVQI--GKEVAEEFNFYVKPFPGSEVTDEALKIQG 57 Query: 51 ----NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 K E + K ++ +N + + N Sbjct: 58 RTREEIEKYDSEEVVFRKFMKILNKHIDKYNKEDKFLVGGYNVRFDIDVI-NKFLRRNGE 116 Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 I LDP + I L + ++ N L + C +GI + + + Sbjct: 117 KYLFSYIQATTLDPLQWIAALQLLKKIPVLKDNKLETWCNHFGIELKAHDSLEDIKATKA 176 Query: 167 LSDVYIKMMVG 177 L+ + +M Sbjct: 177 LTKKMMLLMRE 187 >gi|119469142|ref|ZP_01612126.1| oligoribonuclease [Alteromonadales bacterium TW-7] gi|119447394|gb|EAW28662.1| oligoribonuclease [Alteromonadales bacterium TW-7] Length = 181 Score = 39.1 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 18/31 (58%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 + NK I D+E TGL+ D+I+EI V Sbjct: 1 MTINKSNLIWLDLEMTGLEPATDKILEIATV 31 >gi|262371112|ref|ZP_06064434.1| oligoribonuclease [Acinetobacter johnsonii SH046] gi|262313998|gb|EEY95043.1| oligoribonuclease [Acinetobacter johnsonii SH046] Length = 184 Score = 39.1 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 15/37 (40%), Positives = 20/37 (54%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY 37 M R I D+E TGLD+ ND+IIE+ + D Sbjct: 1 MSSTADTRLIWIDLEMTGLDTDNDQIIEVATIVTDDN 37 >gi|257463061|ref|ZP_05627463.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium sp. D12] Length = 129 Score = 39.1 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39 M+ + FD ETTGL ++ II++ A+ +D Sbjct: 1 MKILYFDTETTGLTYRS-TIIQLAAIIEIDGEV 32 >gi|187779653|ref|ZP_02996126.1| hypothetical protein CLOSPO_03249 [Clostridium sporogenes ATCC 15579] gi|187773278|gb|EDU37080.1| hypothetical protein CLOSPO_03249 [Clostridium sporogenes ATCC 15579] Length = 195 Score = 39.1 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRT 43 M+KI D ETTGL+ II++ V ++ R Sbjct: 1 MKKIFIDTETTGLEPG--EIIQLTYCVCDINSKGEERV 36 >gi|134046188|ref|YP_001097673.1| exonuclease, RNase T and DNA polymerase III [Methanococcus maripaludis C5] gi|132663813|gb|ABO35459.1| Exonuclease, RNase T and DNA polymerase III [Methanococcus maripaludis C5] Length = 189 Score = 39.1 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 6/141 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ETTGL+ I +I + D + ++ + +++ I Sbjct: 1 MK-VFLDTETTGLEPGQ--IAQISYIISDDDLNIQKAENIYFKVKSMEPKAQSVHGLSIE 57 Query: 67 D-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 E L + SF+ ++ D I HN FD F+N+E R + Sbjct: 58 KLESLSEGKSFADHSTQILDDI--NQKILICHNVPFDYKFLNSEFVRCGIEYDPKKFCTM 115 Query: 126 TLSIARRKHPSSRNDLNSLCK 146 P+ + Sbjct: 116 NHYTNLCGIPNPYRPGYKWPR 136 >gi|120555687|ref|YP_960038.1| oligoribonuclease [Marinobacter aquaeolei VT8] gi|166216266|sp|A1U4D2|ORN_MARAV RecName: Full=Oligoribonuclease gi|120325536|gb|ABM19851.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei VT8] Length = 180 Score = 39.1 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 18/25 (72%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R I D+E TGLD + +RIIE+ ++ Sbjct: 6 RLIWIDLEMTGLDPEQERIIEMASI 30 >gi|327279889|ref|XP_003224688.1| PREDICTED: 3'-5' exoribonuclease 1-like [Anolis carolinensis] Length = 343 Score = 39.1 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 66/190 (34%), Gaps = 18/190 (9%) Query: 11 VFDIETT---G--LDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLH 63 V D E T G L+ IIE V + + + TFQ ++ P S + L Sbjct: 127 VIDFEATCEEGNQLEF-THEIIEFPIVLINTRTLEIEDTFQQYVKPVINPQLSDFCINLT 185 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRIN 114 GI+ E + F + D+ ++ + + + + Sbjct: 186 GISQERVDKADEFPKVLQSVIDWMKQKELGSRYSYAILTDGSWDMSKFLNIQCRVNRLRY 245 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I K P ++ L+++ ++ G+ R H L DS ++ + I+M Sbjct: 246 PAFAKKWINIRKSYGNFYKVPRNQTKLSTMLEKLGMDYDGRP-HSGLDDSRNIAQIAIRM 304 Query: 175 MVGGSQINFG 184 + G ++ Sbjct: 305 LQDGCELRVN 314 >gi|316972225|gb|EFV55912.1| three prime repair exonuclease 1 [Trichinella spiralis] Length = 361 Score = 39.1 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34 + D+ETTGL K I EI V + Sbjct: 15 VFLDVETTGLVGKQPSITEIAVVAV 39 >gi|242239767|ref|YP_002987948.1| exonuclease RNase T and DNA polymerase III [Dickeya dadantii Ech703] gi|242131824|gb|ACS86126.1| Exonuclease RNase T and DNA polymerase III [Dickeya dadantii Ech703] Length = 181 Score = 39.1 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 55/177 (31%), Gaps = 9/177 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ET+G ++ IGA + T + P+G K+ PEA+ + G+ Sbjct: 6 YVSVDVETSGPVPGIYSLLSIGACVVS--EPTQSIYLEL-QPDGLKHDPEAVAVTGLDLT 62 Query: 69 F------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 EQ ++ NA FD FIN + + Sbjct: 63 KLESEGLPPQVAMLKLEQWLTQVCPAEQKVIFVGLNAPFDWSFINYYFHKYSGMNPFGFT 122 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ID + + S H AL D+ +++ M+ Sbjct: 123 AIDMKAYYMGLTGCLWKETKSSQMTARFNPISVPSHNALDDARFQGELFALMLAEAR 179 >gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1] gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1] Length = 898 Score = 39.1 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 9/18 (50%), Positives = 15/18 (83%) Query: 10 IVFDIETTGLDSKNDRII 27 + FD ETTGLD++ D+++ Sbjct: 330 VAFDTETTGLDTRTDKMV 347 >gi|120536881|ref|YP_956939.1| exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei VT8] gi|120326715|gb|ABM21024.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei VT8] Length = 291 Score = 39.1 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Query: 10 IV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 +V D ETTG + +D+IIE+G + T Sbjct: 47 VVWLDCETTGFQAGHDKIIELGLTKGYVDPITGE 80 >gi|118473234|ref|YP_888984.1| oligoribonuclease [Mycobacterium smegmatis str. MC2 155] gi|118174521|gb|ABK75417.1| oligoribonuclease [Mycobacterium smegmatis str. MC2 155] Length = 216 Score = 39.1 bits (89), Expect = 0.50, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD K+DR+IEI + D + V + + S + + Sbjct: 15 IDCEMTGLDLKSDRLIEIAVLVTDADLNILGDGLDVVIHADDESLSSMVDVVKQMH 70 >gi|121607325|ref|YP_995132.1| oligoribonuclease [Verminephrobacter eiseniae EF01-2] gi|121551965|gb|ABM56114.1| Exonuclease, RNase T and DNA polymerase III [Verminephrobacter eiseniae EF01-2] Length = 195 Score = 39.1 bits (89), Expect = 0.50, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 12/21 (57%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D E TGL DR++EI V Sbjct: 25 LDCEMTGLTPDTDRLLEIAVV 45 >gi|330879830|gb|EGH13979.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4] Length = 143 Score = 39.1 bits (89), Expect = 0.50, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 5/113 (4%) Query: 9 KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 +V D+E T G +IEIGA + + F+ F+ P R + +L Sbjct: 4 WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPVLTHFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + ++++ +F + + A + + D E + Sbjct: 64 HINQSSIDSAAPLTTVWPQFERWLSHHRARVLGWASWGDYDRQQLEEEWRYHR 116 >gi|256372239|ref|YP_003110063.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium ferrooxidans DSM 10331] gi|256008823|gb|ACU54390.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium ferrooxidans DSM 10331] Length = 475 Score = 39.1 bits (89), Expect = 0.50, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 4/98 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + D+ETTG S D + E+ + + + Q + R P + L GI++ Sbjct: 17 RFAILDVETTGAASGADELTEVAMMVVQEGRALA-HLQSLVH-TDRPIPPAIVALTGISN 74 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 E + D PS ++ + HN +FD F Sbjct: 75 ELVADAPSARTVIERTARLLEG--TVMVGHNVRFDRSF 110 >gi|149197758|ref|ZP_01874808.1| oligoribonuclease [Lentisphaera araneosa HTCC2155] gi|149139328|gb|EDM27731.1| oligoribonuclease [Lentisphaera araneosa HTCC2155] Length = 184 Score = 39.1 bits (89), Expect = 0.50, Method: Composition-based stats. Identities = 11/18 (61%), Positives = 14/18 (77%) Query: 13 DIETTGLDSKNDRIIEIG 30 D+E TGL+ ND+IIEI Sbjct: 11 DLEMTGLNPDNDKIIEIA 28 >gi|114623463|ref|XP_001136735.1| PREDICTED: hypothetical protein LOC463978 isoform 1 [Pan troglodytes] Length = 349 Score = 39.1 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G + IIE V L ++ TFQ ++ P S + L G Sbjct: 132 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTG 191 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQN---------AEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + + D+ + + + + + Sbjct: 192 ITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYP 251 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G+ R H L DS ++ + ++M+ Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HCGLDDSKNIARIAVRML 310 Query: 176 VGGSQINFG 184 G ++ Sbjct: 311 QDGCELRIN 319 >gi|119715587|ref|YP_922552.1| oligoribonuclease [Nocardioides sp. JS614] gi|119536248|gb|ABL80865.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp. JS614] Length = 222 Score = 39.1 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D E TGLD + D +IE+ A V D + + + P + + Sbjct: 4 RLVWIDCEMTGLDLRADALIEVAALVTDFDLNVLGSGVDLIVKPPAEALDQMNEFVRDMH 63 >gi|53728767|ref|ZP_00135217.2| COG1949: Oligoribonuclease (3'->5' exoribonuclease) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208604|ref|YP_001053829.1| oligoribonuclease [Actinobacillus pleuropneumoniae L20] gi|165976560|ref|YP_001652153.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150461|ref|YP_001968986.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250117|ref|ZP_07336319.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253291|ref|ZP_07339440.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246049|ref|ZP_07528131.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248157|ref|ZP_07530185.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250390|ref|ZP_07532338.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252772|ref|ZP_07534663.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255031|ref|ZP_07536849.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257187|ref|ZP_07538959.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259467|ref|ZP_07541192.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261616|ref|ZP_07543284.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263805|ref|ZP_07545411.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|166215747|sp|A3N1D8|ORN_ACTP2 RecName: Full=Oligoribonuclease gi|126097396|gb|ABN74224.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876661|gb|ABY69709.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915592|gb|ACE61844.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647973|gb|EFL78180.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651180|gb|EFL81334.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852984|gb|EFM85207.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855334|gb|EFM87509.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857600|gb|EFM89708.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859804|gb|EFM91826.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861904|gb|EFM93880.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864349|gb|EFM96260.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866403|gb|EFM98266.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868739|gb|EFN00548.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870926|gb|EFN02664.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 184 Score = 39.1 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 18/30 (60%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 M + + I D+E TGLD + +RIIE+ Sbjct: 1 MSKLDNQNLIWIDLEMTGLDPEKERIIEVA 30 >gi|296170420|ref|ZP_06852008.1| oligoribonuclease [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894891|gb|EFG74612.1| oligoribonuclease [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 215 Score = 39.1 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%) Query: 7 MR-KIV-FDIETTGLDSKNDRIIEIGAV 32 MR ++V D E TGLD D++IEI A+ Sbjct: 1 MRDELVWIDCEMTGLDLGTDKLIEIAAL 28 >gi|322788644|gb|EFZ14245.1| hypothetical protein SINV_00413 [Solenopsis invicta] Length = 189 Score = 39.1 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Query: 9 KIV-FDIETTGLDSKNDRIIEIGAV 32 IV D+E TGLD D I+EI + Sbjct: 20 YIVWIDLEMTGLDVDKDHILEIACL 44 >gi|254439757|ref|ZP_05053251.1| exonuclease superfamily [Octadecabacter antarcticus 307] gi|198255203|gb|EDY79517.1| exonuclease superfamily [Octadecabacter antarcticus 307] Length = 203 Score = 39.1 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 7/127 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I D+ET G N I +IG + + +T+ VF+ P P +LHGI+ Sbjct: 17 RFIALDVETAG--KTNGGICQIGLCFVSETGAV-QTYSVFIDPE-EPFEPFNTELHGISA 72 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + +F +++ +D N + ++ FD + + R + + Sbjct: 73 DTVAGAGTFPTVYGALFDLLNAH---SLVQHSTFDEKALTSACARYDLPMITSHWTNSVS 129 Query: 128 SIARRKH 134 Sbjct: 130 VARHAWP 136 >gi|146092931|ref|XP_001466577.1| hypothetical protein [Leishmania infantum] gi|134070940|emb|CAM69616.1| conserved hypothetical protein [Leishmania infantum JPCM5] gi|322500705|emb|CBZ35782.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 405 Score = 39.1 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 62/188 (32%), Gaps = 14/188 (7%) Query: 10 IVFDIETTGL-DSKN--DRIIEIGAVELL---DYSKTNRTFQVFLCP-NGRKNSPEALKL 62 IV D+E T +S+N +IEI V + R+F F+ P + +P +L Sbjct: 77 IVVDVEATCEQNSRNYPHEVIEIPGVLIDVRTGQVDRARSFHTFVKPWRNSRLTPFCTQL 136 Query: 63 HGITDEFLKDKPS----FSSIFSEFWDFFNEQNAEWIAHNAKFDVG---FINAELQRINK 115 GIT E + PS + + A + +D + L+ Sbjct: 137 TGITQEVVDAAPSITEAIQLFEKWYRETIPRGAKTIFAADGPWDFKNFIHEHHILRDHVG 196 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P +D + R H D++ ++ + + MM Sbjct: 197 FPSIFYEYLDIRTTFAHHLNHGVPIKLDAMLRKMNLRFDGRPHNGFDDAYNIARLAVAMM 256 Query: 176 VGGSQINF 183 G ++F Sbjct: 257 KAGCVLDF 264 >gi|229047208|ref|NP_935870.2| oligoribonuclease [Vibrio vulnificus YJ016] gi|229220645|ref|NP_760214.2| oligoribonuclease [Vibrio vulnificus CMCP6] gi|320155081|ref|YP_004187460.1| 3'-to-5' oligoribonuclease [Vibrio vulnificus MO6-24/O] gi|29611786|sp|Q8DCV6|ORN_VIBVU RecName: Full=Oligoribonuclease gi|41017432|sp|Q7MGZ7|ORN_VIBVY RecName: Full=Oligoribonuclease gi|319930393|gb|ADV85257.1| 3'-to-5' oligoribonuclease (orn) [Vibrio vulnificus MO6-24/O] gi|319999184|gb|AAO09741.2| Oligoribonuclease [Vibrio vulnificus CMCP6] Length = 181 Score = 39.1 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD +IIEI ++ Sbjct: 11 IDLEMTGLDPDVHKIIEIASI 31 >gi|160872136|ref|ZP_02062268.1| oligoribonuclease Orn [Rickettsiella grylli] gi|159120935|gb|EDP46273.1| oligoribonuclease Orn [Rickettsiella grylli] Length = 181 Score = 39.1 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 6/41 (14%) Query: 12 FDIETTGLDSKNDRIIEIGAV------ELLDYSKTNRTFQV 46 D+E TGLD+ D+IIEI + E+++ FQ Sbjct: 11 IDLEMTGLDTNQDKIIEIATIITDSQLEIIEEGPVFAIFQS 51 >gi|156933577|ref|YP_001437493.1| exodeoxyribonuclease X [Cronobacter sakazakii ATCC BAA-894] gi|156531831|gb|ABU76657.1| hypothetical protein ESA_01397 [Cronobacter sakazakii ATCC BAA-894] Length = 220 Score = 39.1 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 17/165 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL ++E+ +V+++D + + P+ R S +A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGVVEVASVDIIDGAIV-NPMSDLVRPD-RPISHQAMAIHKITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + + ++AHNA FD + + Sbjct: 59 ADKPYIEEVIPRYH-----GSQWYVAHNASFDRKVLPEMPGEWICT-------VKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 S L K T H AL D ++ + + +++M Sbjct: 107 WPGIRYSNMGLYKSLKLQVETPEGLHHHRALFDCYITAALLLEIM 151 >gi|119474830|ref|ZP_01615183.1| oligoribonuclease [marine gamma proteobacterium HTCC2143] gi|119451033|gb|EAW32266.1| oligoribonuclease [marine gamma proteobacterium HTCC2143] Length = 195 Score = 39.1 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 12/19 (63%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ D IIEI Sbjct: 19 IDLEMTGLEPATDHIIEIA 37 >gi|283782956|ref|YP_003373710.1| exonuclease [Gardnerella vaginalis 409-05] gi|283441223|gb|ADB13689.1| exonuclease [Gardnerella vaginalis 409-05] Length = 259 Score = 39.1 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 7/122 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQV-FLCPNGRKNSPEAL---KLHGI 65 FD ETTG + D I+ + L + T + P+ N + Sbjct: 32 FDTETTGANIGKDAIVS-ATLVLRNPELAHTGDVVSTWLINPHQPMNPKASEVNGFTDEY 90 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 E + + +N +A+NA FD+ + +L+ + L+ Sbjct: 91 LKEHGGEPEEELEFLARAVSMAQAKNIPLLAYNAPFDIAMLRHDLKHWHLTALEERATCP 150 Query: 126 TL 127 Sbjct: 151 IH 152 >gi|260598318|ref|YP_003210889.1| exodeoxyribonuclease X [Cronobacter turicensis z3032] gi|260217495|emb|CBA31655.1| Exodeoxyribonuclease 10 [Cronobacter turicensis z3032] Length = 220 Score = 39.1 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 64/165 (38%), Gaps = 17/165 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL ++E+ +V+++D + + P+ R S +A+ +H IT+ + Sbjct: 4 IIDTETCGL---QGGVVEVASVDIIDGAIV-NPMSDLVRPD-RPISHQAMAIHKITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + + ++AHNA FD + + Sbjct: 59 ADKPYIEDVIPRYH-----GSPWYVAHNASFDRKVLPEMPGEWICT-------VKLARRL 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 S L K T + H AL D ++ + + +++M Sbjct: 107 WPGIRYSNMGLYKSLKLQVETPAGLHHHRALFDCYITAALLLEIM 151 >gi|296283564|ref|ZP_06861562.1| exonuclease, RNase T and DNA polymerase III [Citromicrobium bathyomarinum JL354] Length = 180 Score = 39.1 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI--- 65 I D+ET+G ++ IGA + + ++ F+ L P + P+AL++ G+ Sbjct: 8 FISVDVETSGPIPGEFSLLSIGACAVD---RPDQHFECLLKPITDRADPKALEVSGLSLE 64 Query: 66 ---TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + ++ NA FD F+N R + Sbjct: 65 ILQHTGLEPVQAMERFEIWVGQMAGETGTPIFVGFNAPFDWSFVNYYFHRFLRRNPFGFT 124 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +D + +S S R + + H L D+ ++++ Sbjct: 125 ALDIKAYYMGSAGTSWEATRSSKMRKQLGAALEGDHDPLNDALAQAELF 173 >gi|282864742|ref|ZP_06273796.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE] gi|282560167|gb|EFB65715.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE] Length = 243 Score = 39.1 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 13/24 (54%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL 35 FD+ETTG D RI+ V + Sbjct: 11 FDLETTGTDPLEARIVTAAVVAVE 34 >gi|302877099|ref|YP_003845732.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] gi|307687794|ref|ZP_07630240.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] gi|302579956|gb|ADL53968.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] Length = 255 Score = 39.1 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 21/183 (11%) Query: 7 MRKIVFDIETTGLDSKN---------------DRIIEIGAVELLDYSKTNRTFQVFLCPN 51 M I++D+E + + II+IGA++L + +T F + P Sbjct: 1 MNYIIYDLE---FNQEYLHSSEVQSANNSSLPFEIIQIGALKLTENFETVANFNSLIKPT 57 Query: 52 GRK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 P L I D + +F ++ +F +F + Sbjct: 58 VYPIIHPYVESLTKINDSMVSSCETFPQVYEDFLEFIGNDETTLCVWGISDIKELLRNIK 117 Query: 111 QRINKDPLDPSRIIDTLSIARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 ID A + P+ S ++ H A D++ + Sbjct: 118 FYNLPSSTISKNYIDIQKYASKHLRTPNKSRIGLSTAISLLNIPTNGQFHDAFNDAYYTT 177 Query: 169 DVY 171 +V+ Sbjct: 178 EVF 180 >gi|322835471|ref|YP_004215497.1| exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602] gi|321170672|gb|ADW76370.1| Exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602] Length = 220 Score = 39.1 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 73/210 (34%), Gaps = 22/210 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL ++E+ +V++ D + P+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCGL---QGGVVEVASVDIEDGKIV-NPMSDLVRPD-RPISHQAMAIHKITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I + + ++AHNA FD + P I T+ ++ Sbjct: 59 ADKPWIEEIIPRYH-----GSQYYVAHNASFDQRMLPD----------MPGDWICTVKLS 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 RR P + +L K + ++ + ++ + + E Sbjct: 104 RRLWPGIKYSNMALYKSLKLDVATPADLHHHRALFDCYITAALLIRIMDESGW--TPEEM 161 Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 V + K I +++ Sbjct: 162 VTITGRPALVSTMMFGKYRGRKIAEIAEDD 191 >gi|297682312|ref|XP_002818868.1| PREDICTED: 3'-5' exoribonuclease 1-like [Pongo abelii] Length = 349 Score = 39.1 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G + IIE V L ++ + TFQ ++ P S + L G Sbjct: 132 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTG 191 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + + D+ + + + + + Sbjct: 192 ITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRLKYP 251 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G+ R H L DS ++ + ++M+ Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HCGLDDSKNIARIAVRML 310 Query: 176 VGGSQINFG 184 G ++ Sbjct: 311 QDGCELRIN 319 >gi|254453316|ref|ZP_05066753.1| exonuclease [Octadecabacter antarcticus 238] gi|198267722|gb|EDY91992.1| exonuclease [Octadecabacter antarcticus 238] Length = 206 Score = 39.1 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 7/115 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I D+ET G I +IG + + +T+ V + P +LHGI+ Sbjct: 20 RFIALDVETAGKTIGG--ICQIGLCFVSNTGAV-QTYSVLIDPE-EPFEQFNTELHGISA 75 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + + F +++ +D N N + ++ FD + ++ R + Sbjct: 76 DTVAGAGIFPMVYAALFDLLNTHN---LIQHSTFDEKALTSDCARYGLPMITSHW 127 >gi|257461276|ref|ZP_05626373.1| DNA polymerase III subunit epsilon [Campylobacter gracilis RM3268] gi|257441304|gb|EEV16450.1| DNA polymerase III subunit epsilon [Campylobacter gracilis RM3268] Length = 268 Score = 39.1 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 8/115 (6%) Query: 11 VFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 DIET G L N +IIEIGA++ + +R F+ F+ +L GI + Sbjct: 75 FVDIETNGGLS--NGQIIEIGAIKTRGTQELDR-FESFV--YAPVVPENITELTGICADD 129 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 L P +S+ F ++ ++AHN KFD GFI+A LQ+ L R+ Sbjct: 130 LVGAPPLASVLERF--RLFLGDSVFVAHNVKFDYGFIDASLQKCGFGMLLNRRLC 182 >gi|325508392|gb|ADZ20028.1| putative elongation subunit of DNA-dependent DNA polymerase [Clostridium acetobutylicum EA 2018] Length = 265 Score = 39.1 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 3/88 (3%) Query: 1 MIRKNKMR-KIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 ++++ M+ + FDIETTG D + D I I IG ++ D + F L Sbjct: 16 IVKEYSMKSMVYFDIETTGFDREQDNIILISIGYYDVKDTFHIKQYFAEDLNEEKYVLEN 75 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWD 85 + + +F F + Sbjct: 76 LKGDIENFNMWCSYNGKAFDEPFIQSRM 103 >gi|227499563|ref|ZP_03929670.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098] gi|227218322|gb|EEI83576.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098] Length = 301 Score = 39.1 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 25/32 (78%), Gaps = 3/32 (9%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVE 33 +++N+M + DIETTGLDS+ D+++ +G +E Sbjct: 13 LKENEM---ILDIETTGLDSRVDKLVLLGLIE 41 >gi|307822745|ref|ZP_07652976.1| Exonuclease RNase T and DNA polymerase III [Methylobacter tundripaludum SV96] gi|307736349|gb|EFO07195.1| Exonuclease RNase T and DNA polymerase III [Methylobacter tundripaludum SV96] Length = 181 Score = 39.1 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD ND IIEI Sbjct: 11 IDLEMTGLDPDNDLIIEIA 29 >gi|15895183|ref|NP_348532.1| ribonuclease D [Clostridium acetobutylicum ATCC 824] gi|15024889|gb|AAK79872.1|AE007698_6 Ribonuclease D [Clostridium acetobutylicum ATCC 824] gi|325509325|gb|ADZ20961.1| Ribonuclease D [Clostridium acetobutylicum EA 2018] Length = 205 Score = 39.1 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%) Query: 8 RKIVFDIETTGLDSKNDR--IIEIGA 31 + I D ETTGLD D+ +I+I A Sbjct: 24 KYIAIDTETTGLDPLKDKLCLIQICA 49 >gi|330946499|gb|EGH47535.1| exonuclease [Pseudomonas syringae pv. pisi str. 1704B] Length = 137 Score = 39.1 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 5/130 (3%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63 +V D+E TT G +IEIGA + + F+ F+ P R + +L Sbjct: 4 WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCRELT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 I + ++++ +F + + A + + N + Sbjct: 64 HINQSSIDSAAPLTTVWPQFERWLSHHRARIVGWASWGTTIVSNWKRNGATITSTVRCPA 123 Query: 124 IDTLSIARRK 133 T +R Sbjct: 124 CRTSISKQRF 133 >gi|294789770|ref|ZP_06755000.1| oligoribonuclease [Simonsiella muelleri ATCC 29453] gi|294482276|gb|EFG29973.1| oligoribonuclease [Simonsiella muelleri ATCC 29453] Length = 184 Score = 39.1 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ +D+IIEI + Sbjct: 10 LDMEMTGLNPDSDKIIEIAMI 30 >gi|212716446|ref|ZP_03324574.1| hypothetical protein BIFCAT_01370 [Bifidobacterium catenulatum DSM 16992] gi|212660699|gb|EEB21274.1| hypothetical protein BIFCAT_01370 [Bifidobacterium catenulatum DSM 16992] Length = 216 Score = 39.1 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50 R I D E TGLD +D + EI V D + + + P Sbjct: 16 RLIWIDCEMTGLDIFHDELCEISVVPTDFDLNVLDEGIDFVIKP 59 >gi|50955048|ref|YP_062336.1| oligoribonuclease [Leifsonia xyli subsp. xyli str. CTCB07] gi|81826639|sp|Q6AEG5|ORN_LEIXX RecName: Full=Oligoribonuclease gi|50951530|gb|AAT89231.1| oligoribonuclease [Leifsonia xyli subsp. xyli str. CTCB07] Length = 207 Score = 39.1 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51 R + D E TGLD D ++EI V D + + + + P+ Sbjct: 7 RLVWIDCEMTGLDLAVDELVEIAVVITDFDLNVLDPGLSIVIKPD 51 >gi|115396528|ref|XP_001213903.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114193472|gb|EAU35172.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 186 Score = 39.1 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 9/20 (45%), Positives = 13/20 (65%) Query: 12 FDIETTGLDSKNDRIIEIGA 31 D E TGLD + D+I++I Sbjct: 13 IDCEMTGLDPETDQILQICC 32 >gi|21355135|ref|NP_651184.1| CG10214 [Drosophila melanogaster] gi|11133808|sp|Q9VCI0|ORN_DROME RecName: Full=Probable oligoribonuclease gi|7301049|gb|AAF56185.1| CG10214 [Drosophila melanogaster] gi|16769160|gb|AAL28799.1| LD18757p [Drosophila melanogaster] gi|220942706|gb|ACL83896.1| CG10214-PA [synthetic construct] gi|220952944|gb|ACL89015.1| CG10214-PA [synthetic construct] Length = 211 Score = 39.1 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 5/61 (8%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+E TGLD + D+I+E+ + P N P+ + Sbjct: 42 DLEMTGLDIEKDKILEVACIITDQDLNVKSE-----GPCFAINHPQEVYDSMNEWCMKHH 96 Query: 73 K 73 Sbjct: 97 Y 97 >gi|256390707|ref|YP_003112271.1| exonuclease RNase T and DNA polymerase III [Catenulispora acidiphila DSM 44928] gi|256356933|gb|ACU70430.1| Exonuclease RNase T and DNA polymerase III [Catenulispora acidiphila DSM 44928] Length = 295 Score = 39.1 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD ETTG D K+ RI+ V + + P G + EA +HGIT E+ + Sbjct: 75 FDTETTGRDPKSVRIVSAALV-----TSDGAEKAFLIDP-GVEIPAEATAIHGITTEYAR 128 Query: 72 DK 73 + Sbjct: 129 EH 130 >gi|52842945|ref|YP_096744.1| oligoribonuclease [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54295579|ref|YP_127994.1| oligoribonuclease [Legionella pneumophila str. Lens] gi|54298733|ref|YP_125102.1| oligoribonuclease [Legionella pneumophila str. Paris] gi|148358519|ref|YP_001249726.1| oligoribonuclease [Legionella pneumophila str. Corby] gi|296108393|ref|YP_003620094.1| putative ACR [Legionella pneumophila 2300/99 Alcoy] gi|59797992|sp|Q5WT59|ORN_LEGPL RecName: Full=Oligoribonuclease gi|59797993|sp|Q5X1E6|ORN_LEGPA RecName: Full=Oligoribonuclease gi|59797999|sp|Q5ZRY0|ORN_LEGPH RecName: Full=Oligoribonuclease gi|166216265|sp|A5IAI0|ORN_LEGPC RecName: Full=Oligoribonuclease gi|52630056|gb|AAU28797.1| oligoribonuclease [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53752518|emb|CAH13950.1| hypothetical protein lpp2797 [Legionella pneumophila str. Paris] gi|53755411|emb|CAH16907.1| hypothetical protein lpl2666 [Legionella pneumophila str. Lens] gi|148280292|gb|ABQ54380.1| oligoribonuclease [Legionella pneumophila str. Corby] gi|295650295|gb|ADG26142.1| putative ACR [Legionella pneumophila 2300/99 Alcoy] gi|307611619|emb|CBX01303.1| hypothetical protein LPW_30001 [Legionella pneumophila 130b] Length = 187 Score = 39.1 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 17/27 (62%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 KN I D+E TGL+ + DRIIE+ Sbjct: 2 KNNQNLIWIDLEMTGLEPEQDRIIEMA 28 >gi|56461520|ref|YP_156801.1| EXOIII family exonuclease [Idiomarina loihiensis L2TR] gi|56180530|gb|AAV83252.1| EXOIII family exonuclease [Idiomarina loihiensis L2TR] Length = 192 Score = 39.1 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 44/136 (32%), Gaps = 12/136 (8%) Query: 9 KIVFDIETT-------GLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-S 56 ++ D+E T GLD K IIE G V D + P N S Sbjct: 12 YLIVDLEATCWDGNVEGLDRKQTVDDMEIIEFGCVIAEDNGTVRDYRSFMVRPQSHPNLS 71 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 +L I + P + S+ E + E +D I+AE +R N Sbjct: 72 EFCTQLTSIAQSDVDAAPVYQSVVPEIDQWLKNYKLEGWGSWGNYDKNQISAEQRRHNLA 131 Query: 117 PLDPSRIIDTLSIARR 132 P S + R Sbjct: 132 PEFFSLSHMNIKQEWR 147 >gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563] gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563] Length = 926 Score = 39.1 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 67/233 (28%), Gaps = 27/233 (11%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIG-AVE--------------LLDYSKTNRTFQVFLC 49 N + + D ETTGLD D II I A+ + + F+ Sbjct: 353 NSKKLVCVDFETTGLDVFKDTIIGISFAIRSNEAFYLDVSGRTNIDKDKCIDMVFETLAK 412 Query: 50 PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 + + I + +I F + + + N ++ Sbjct: 413 EDIKV----------IGHNLKYEYKMMRAINKSFGNMYFDTMVAAYLINPTRGRYNMDDL 462 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 I + ++ + C+ IT LL +H L + Sbjct: 463 AIAYLSYNTIKYSDITDNAKKTLLDVPLKDVVEYACEDADITFRFYECFAPLLKTHNLEE 522 Query: 170 VY--IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 ++ I+M + + F K + + SLL++ K EE Sbjct: 523 LFFNIEMPLVSVLADMEFDGVYISSEKMKALSDEYSSLLEKTKKKIYAEAGEE 575 >gi|148361305|ref|YP_001252512.1| ribonuclease T [Legionella pneumophila str. Corby] gi|296108645|ref|YP_003620346.1| ribonuclease T [Legionella pneumophila 2300/99 Alcoy] gi|148283078|gb|ABQ57166.1| ribonuclease T [Legionella pneumophila str. Corby] gi|295650547|gb|ADG26394.1| ribonuclease T [Legionella pneumophila 2300/99 Alcoy] Length = 207 Score = 39.1 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDY-----SKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D+ET G+D + + ++E+ V L K + F+ L G + ++L+ + Sbjct: 22 VVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKESSYFEHILPFPGAELDQKSLEFNQ 81 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + Q A + HNA FD+ FI A ++R Sbjct: 82 IDPYQPLRFAVDEQIALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIKAAIKRTGIK 141 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L + G+ + H A+ D+ +D++ M+ Sbjct: 142 SP-FHAFTCFDTATLAGLIFGETVLAKAVQTAGLHFDSQEAHSAIYDAEKTADLFCLMIN 200 Query: 177 GGSQINF 183 +N Sbjct: 201 KWRMLNI 207 >gi|54295804|ref|YP_128219.1| ribonuclease T [Legionella pneumophila str. Lens] gi|53755636|emb|CAH17138.1| ribonuclease T [Legionella pneumophila str. Lens] gi|307611851|emb|CBX01565.1| ribonuclease T [Legionella pneumophila 130b] Length = 207 Score = 39.1 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDY-----SKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D+ET G+D + + ++E+ V L K + F+ L G + ++L+ + Sbjct: 22 VVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKESSYFEHILPFPGAELDQKSLEFNQ 81 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + Q A + HNA FD+ FI A ++R Sbjct: 82 IDPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIKAAIKRTGIK 141 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L + G+ + H A+ D+ +D++ M+ Sbjct: 142 SP-FHAFTCFDTATLAGLIFGETVLAKAVQAAGLHFDSQEAHSAIYDAEKTADLFCLMIN 200 Query: 177 GGSQINF 183 +N Sbjct: 201 KWRMLNI 207 >gi|323223540|gb|EGA07861.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 60 Score = 39.1 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + D ET GL I+EI +V+++D + + P+ Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGNIV-NPMSHLIRPDRPITPQAMAIH 51 >gi|15894265|ref|NP_347614.1| elongation subunit of DNA-dependent DNA polymerase [Clostridium acetobutylicum ATCC 824] gi|15023885|gb|AAK78954.1|AE007614_2 Possible elongation subunit of DNA-dependent DNA polymerase [Clostridium acetobutylicum ATCC 824] Length = 274 Score = 39.1 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 3/88 (3%) Query: 1 MIRKNKMR-KIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 ++++ M+ + FDIETTG D + D I I IG ++ D + F L Sbjct: 25 IVKEYSMKSMVYFDIETTGFDREQDNIILISIGYYDVKDTFHIKQYFAEDLNEEKYVLEN 84 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWD 85 + + +F F + Sbjct: 85 LKGDIENFNMWCSYNGKAFDEPFIQSRM 112 >gi|314923751|gb|EFS87582.1| exonuclease [Propionibacterium acnes HL001PA1] gi|314966126|gb|EFT10225.1| exonuclease [Propionibacterium acnes HL082PA2] gi|314982038|gb|EFT26131.1| exonuclease [Propionibacterium acnes HL110PA3] gi|315090803|gb|EFT62779.1| exonuclease [Propionibacterium acnes HL110PA4] gi|315095017|gb|EFT66993.1| exonuclease [Propionibacterium acnes HL060PA1] gi|315104354|gb|EFT76330.1| exonuclease [Propionibacterium acnes HL050PA2] gi|327328205|gb|EGE69974.1| oligoribonuclease [Propionibacterium acnes HL103PA1] Length = 202 Score = 39.1 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD +D +IE+ A+ V + P + + + Sbjct: 5 IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPESQWLDHMNDFVRDMH 60 >gi|298369765|ref|ZP_06981082.1| oligoribonuclease [Neisseria sp. oral taxon 014 str. F0314] gi|298282322|gb|EFI23810.1| oligoribonuclease [Neisseria sp. oral taxon 014 str. F0314] Length = 185 Score = 39.1 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +RIIE+ + Sbjct: 11 LDMEMTGLDPERERIIEVAMI 31 >gi|71275767|ref|ZP_00652051.1| Exodeoxyribonuclease I [Xylella fastidiosa Dixon] gi|71902145|ref|ZP_00684172.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1] gi|170730127|ref|YP_001775560.1| exonuclease I [Xylella fastidiosa M12] gi|71163345|gb|EAO13063.1| Exodeoxyribonuclease I [Xylella fastidiosa Dixon] gi|71728093|gb|EAO30295.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1] gi|167964920|gb|ACA11930.1| Exodeoxyribonuclease I [Xylella fastidiosa M12] Length = 488 Score = 39.1 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 43/155 (27%), Gaps = 6/155 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65 + +D+ET G D + RI + AV + + P + L Sbjct: 15 FLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGIT 74 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ S + F+ + + + +N + F + ++ + Sbjct: 75 PQHAQREGISEVAAFAHITMQMTQPHTCSLGYN---TLRFDDEFIRYGLFRHFYDPYERE 131 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 + R L + GI R Sbjct: 132 WRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAP 166 >gi|328791793|ref|XP_624063.2| PREDICTED: probable oligoribonuclease-like [Apis mellifera] Length = 144 Score = 39.1 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 2/64 (3%) Query: 5 NKMRKIV-FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 NK IV D E TGL + D I+EI + D + + F + + Sbjct: 4 NKHNCIVWIDTELTGLQIETDTILEIACLITDEDLNIVSEEFNIVINQPDVVLEHMNEWC 63 Query: 63 HGIT 66 Sbjct: 64 MNFH 67 >gi|327307324|ref|XP_003238353.1| RNA exonuclease Rex2 [Trichophyton rubrum CBS 118892] gi|326458609|gb|EGD84062.1| RNA exonuclease Rex2 [Trichophyton rubrum CBS 118892] Length = 188 Score = 39.1 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 6/59 (10%) Query: 12 FDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD ND I++I V+L F+ + Sbjct: 13 IDCEMTGLDPANDHILQICCYITDVQLNLLEPEG--FEAIVHQPQDVLDRMNAWCIDTH 69 >gi|322488730|emb|CBZ23977.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 405 Score = 39.1 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 72/242 (29%), Gaps = 29/242 (11%) Query: 10 IVFDIETTGL-DSKN--DRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKN-SPEALKL 62 IV D+E T ++++ +IEI V + R+F F+ P +P +L Sbjct: 77 IVVDVEATCEQNARSYPHEVIEIPGVLIDVRTGQVDRARSFHTFVKPWRNPRLTPFCTQL 136 Query: 63 HGITDEFLKDKPS----FSSIFSEFWDFFNEQNAEWIAHNAKFDVG---FINAELQRINK 115 GIT + PS + + A + +D + L+ Sbjct: 137 TGITQVVVDAAPSITEAIQLFEKWYRETIPRGAKTIFAADGPWDFKNFIHEHHILRDHVS 196 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P +D + + R H D++ ++ + + MM Sbjct: 197 FPSIFYEYLDIRTTFAHRLNHGVPIKLDAMLRKMNLRFDGRPHNGFDDAYNIARLAVAMM 256 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH--DKTIQTLGK 233 G ++F D + VP EE H ++ + K Sbjct: 257 KAGCVLDFVIAIPLDDAYHYHLDGVPLYRR-------------EEGSGHVDRDVVEDIAK 303 Query: 234 NA 235 Sbjct: 304 KC 305 >gi|306836447|ref|ZP_07469422.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49726] gi|304567666|gb|EFM43256.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49726] Length = 454 Score = 39.1 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 + D+ET + I +IGAV D +T ++++ P + + +HGIT Sbjct: 110 FVAVDVET--ANDNWGSICQIGAVRYRDGGETASQSWLCTPPPGLEHFAEINISIHGITA 167 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 ++ F++ +E +DF +AHN +FD Sbjct: 168 ADVEGAMPFATAAAELFDFIGS--DVIVAHNVQFDSS 202 >gi|227503316|ref|ZP_03933365.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49725] gi|227075819|gb|EEI13782.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49725] Length = 470 Score = 39.1 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 + D+ET + I +IGAV D +T ++++ P + + +HGIT Sbjct: 126 FVAVDVET--ANDNWGSICQIGAVRYRDGGETASQSWLCTPPPGLEHFAEINISIHGITA 183 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 ++ F++ +E +DF +AHN +FD Sbjct: 184 ADVEGAMPFATAAAELFDFIGS--DVIVAHNVQFDSS 218 >gi|225350877|ref|ZP_03741900.1| hypothetical protein BIFPSEUDO_02451 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158333|gb|EEG71575.1| hypothetical protein BIFPSEUDO_02451 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 216 Score = 39.1 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50 R I D E TGLD +D + EI V D + + + P Sbjct: 16 RLIWIDCEMTGLDIFHDELCEISVVPTDFDLNVLDEGIDFVIKP 59 >gi|182419685|ref|ZP_02950926.1| exonuclease family [Clostridium butyricum 5521] gi|237665882|ref|ZP_04525870.1| exonuclease family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376422|gb|EDT74003.1| exonuclease family [Clostridium butyricum 5521] gi|237658829|gb|EEP56381.1| exonuclease family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 309 Score = 39.1 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 62/189 (32%), Gaps = 22/189 (11%) Query: 7 MRKIVFDIE-------------TTGLD---SKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50 M IV D+E T L+ D +++IGAV+L + K +F+ ++ P Sbjct: 1 MIFIVLDLEYNHIDNRNKLLSNTLHLNRPSYMTDEVLQIGAVKLDENLKYISSFKRYIKP 60 Query: 51 NG------RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 R + ++ I +K K + + + ++ + Sbjct: 61 QFLVTLNKRVQDLIQIDMNYIKTNGVKFKRAVYEFMDFIGENLKDVVIITWGYSDWIILN 120 Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 + N + D I + ++ L + ++Y I+ H A D+ Sbjct: 121 KNFEANKIKNINLNDAYYIDLQRVVMNKEGIKIDPSLKGIAEKYNISACRDKYHDAYYDA 180 Query: 165 HLLSDVYIK 173 + + Sbjct: 181 VITKSILQN 189 >gi|120405054|ref|YP_954883.1| oligoribonuclease [Mycobacterium vanbaalenii PYR-1] gi|119957872|gb|ABM14877.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium vanbaalenii PYR-1] Length = 214 Score = 39.1 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D E TGLD K+DR+IEI + Sbjct: 11 IDCEMTGLDLKSDRLIEIAVL 31 >gi|291286506|ref|YP_003503322.1| Exonuclease RNase T and DNA polymerase III [Denitrovibrio acetiphilus DSM 12809] gi|290883666|gb|ADD67366.1| Exonuclease RNase T and DNA polymerase III [Denitrovibrio acetiphilus DSM 12809] Length = 174 Score = 39.1 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 3 RKNKM-RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 ++ M +K+ D++T+G+ IIEI A++ T F ++ Sbjct: 7 KEALMAQKVYIDMKTSGISPSKGEIIEICALKPDVDLMTYEMFHAYIK 54 >gi|269795775|ref|YP_003315230.1| 5' exoribonuclease [Sanguibacter keddieii DSM 10542] gi|269097960|gb|ACZ22396.1| oligoribonuclease (3'->5' exoribonuclease) [Sanguibacter keddieii DSM 10542] Length = 220 Score = 39.1 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--NRTFQVFLCPNGR 53 R + D E TGLD D ++E+ AV + D T + + P Sbjct: 9 RIVWIDCEMTGLDLGADALVEVAAV-VTDSELTVLGEGIDIIVRPPDE 55 >gi|258652005|ref|YP_003201161.1| exonuclease RNase T and DNA polymerase III [Nakamurella multipartita DSM 44233] gi|258555230|gb|ACV78172.1| Exonuclease RNase T and DNA polymerase III [Nakamurella multipartita DSM 44233] Length = 212 Score = 39.1 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D E TGLD D++IEI A+ Sbjct: 4 RLVWVDCEMTGLDLGTDKLIEIAAL 28 >gi|254417569|ref|ZP_05031307.1| exonuclease superfamily [Microcoleus chthonoplastes PCC 7420] gi|196175667|gb|EDX70693.1| exonuclease superfamily [Microcoleus chthonoplastes PCC 7420] Length = 191 Score = 39.1 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 7/135 (5%) Query: 2 IRKNKMRKIVFDIETT---GLDS--KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKN 55 + + + +V D+E T G + IIEIG L +S + +T + + P Sbjct: 1 MSRKIDQILVIDVEATCWQGKPPPGQESEIIEIGVCLLDCHSHSAVKTESMLVKPERSTV 60 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 S +L +T E + SF+ + W ++ ++D + Q Sbjct: 61 SEFCTELTTLTQEQVDQGMSFAQACERLQKRYLSHQRVWASY-GEYDKNQFQKQCQSFGV 119 Query: 116 DPLDPSRIIDTLSIA 130 + SR I+ + Sbjct: 120 EYPFDSRHINVKTWF 134 >gi|313669465|ref|YP_004049891.1| exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense DSM 16994] gi|313156662|gb|ADR35338.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense DSM 16994] Length = 174 Score = 38.8 bits (88), Expect = 0.61, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 50/172 (29%), Gaps = 10/172 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 I+ D ET + +IE+ A + TF + N Sbjct: 2 IILDFETN--SANIHDVIEVAAFRIKREEGVYVIADTFHRYYFSEYEVNPYALAVHKLSP 59 Query: 67 DEFLKDKPSFSSIFSEFWD----FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + + + D F + IAHN F++ + ++ S Sbjct: 60 QRIERLRANVDYAEHFAEDSEFVEFCQGAKTLIAHNITFELRHLGELVRFEKHFCTMKSN 119 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +I R + L + C+ Y I H A+ D +V M Sbjct: 120 KKIVGAINIRGSLKNPKLLET-CRHYQIEFDEEQYHSAVYDVTKTLEVLNNM 170 >gi|293395725|ref|ZP_06640007.1| exodeoxyribonuclease X [Serratia odorifera DSM 4582] gi|291421662|gb|EFE94909.1| exodeoxyribonuclease X [Serratia odorifera DSM 4582] Length = 222 Score = 38.8 bits (88), Expect = 0.61, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 22/211 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GLD I+E+ +++++D +CP+ R EA+ +H IT+ + Sbjct: 5 VIDTETCGLD---GGIVEVASIDIIDGQL-ANPMSDLVCPD-RPIGIEAMAIHHITEAMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP + + + ++AHNA FD G + R I T+ +A Sbjct: 60 EGKPRIAVAIGRYM-----GSEYYVAHNAAFDRGVLPE----------MNGRWICTVKLA 104 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R +P + L + + L L D Y+ + I + E+ Sbjct: 105 RALYPGIKYGNQYLRYALNLE-VQLPQDTTLYPHRALYDCYVTAALLQRIIKDSGWSAEE 163 Query: 191 -RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 E+ + K RI +E+ Sbjct: 164 MANITEQPVLLKTFKFGKYRGQPIDRIAQED 194 >gi|189235963|ref|XP_969322.2| PREDICTED: similar to p15-2a protein [Tribolium castaneum] Length = 292 Score = 38.8 bits (88), Expect = 0.61, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 23/102 (22%), Gaps = 15/102 (14%) Query: 9 KIVFDIETTGLDS---KNDRIIEIGAVELLDYSK------------TNRTFQVFLCPNGR 53 + FD+ETTGL RI E AV + + P Sbjct: 7 FVFFDLETTGLPKFEENRTRITEFCAVAVRADHIGLQTAQKCKLPRVQSKLSLCFNPARA 66 Query: 54 KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI 95 + S + ++ + Sbjct: 67 ICPQATKLTGLSNELLEHQAHFSSQTLNVIKNWLDVNEKPIC 108 >gi|78484978|ref|YP_390903.1| oligoribonuclease [Thiomicrospira crunogena XCL-2] gi|123555812|sp|Q31HZ4|ORN_THICR RecName: Full=Oligoribonuclease gi|78363264|gb|ABB41229.1| Exonuclease [Thiomicrospira crunogena XCL-2] Length = 184 Score = 38.8 bits (88), Expect = 0.61, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD K D+IIEI V Sbjct: 10 IDLEMTGLDHKADQIIEIATV 30 >gi|330504554|ref|YP_004381423.1| exonuclease I [Pseudomonas mendocina NK-01] gi|328918840|gb|AEB59671.1| exonuclease I [Pseudomonas mendocina NK-01] Length = 481 Score = 38.8 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 13 DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61 D ETTG++ + DR +++ + + ++ ++ P+ A Sbjct: 9 DYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAAC 58 >gi|146308334|ref|YP_001188799.1| exonuclease I [Pseudomonas mendocina ymp] gi|145576535|gb|ABP86067.1| Exodeoxyribonuclease I subunit C [Pseudomonas mendocina ymp] Length = 481 Score = 38.8 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 13 DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61 D ETTG++ + DR +++ + + ++ ++ P+ A Sbjct: 9 DYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAAC 58 >gi|292488519|ref|YP_003531403.1| exodeoxyribonuclease X [Erwinia amylovora CFBP1430] gi|292899700|ref|YP_003539069.1| exodeoxyribonuclease X [Erwinia amylovora ATCC 49946] gi|291199548|emb|CBJ46665.1| exodeoxyribonuclease X [Erwinia amylovora ATCC 49946] gi|291553950|emb|CBA20995.1| exodeoxyribonuclease X [Erwinia amylovora CFBP1430] Length = 221 Score = 38.8 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 20/174 (11%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL ++E+ +V++++ + P+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCGL---QGGVVEVASVDVINGQIV-NPMSDLISPD-RPISRQAIAVHKITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP+ + + ++AHNA FD + I T+++A Sbjct: 59 RGKPTIEQAIGRYH-----GSPFYVAHNASFDRRMLPE----------MHGEWICTMTLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 RR P + SL + + +S ++ A + ++ S + Sbjct: 104 RRLWPGLKYTNESLRQSLQLEVSPPAELHAHRALYDCYVTAALLIRIMSFSGWD 157 >gi|89052623|ref|YP_508074.1| exonuclease [Jannaschia sp. CCS1] gi|88862172|gb|ABD53049.1| Exonuclease [Jannaschia sp. CCS1] Length = 196 Score = 38.8 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 60/188 (31%), Gaps = 17/188 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I D+ET ++ I +IG + + T + P + SP LHGI+ Sbjct: 16 RFIAVDVET--ANNAQGSICQIGLCCV-GSDDSLNTVSTLIDPE-QSFSPFNTDLHGISA 71 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + P+F ++ + N + +++FD A R + + Sbjct: 72 ETVNGAPTFPQAYASLYPVLNAH---RLVQHSRFDEAAFTAACARYDVPMVTSHWTDSVK 128 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK----------MMVG 177 + + L H A D+ + V ++ + Sbjct: 129 IARQAWPELKGAGGHGLASLKKALGLSFHHHDAGEDARASATVILRAEARISKAVAHLRF 188 Query: 178 GSQINFGF 185 Q+ F F Sbjct: 189 DPQLAFEF 196 >gi|238762297|ref|ZP_04623269.1| Exodeoxyribonuclease 10 [Yersinia kristensenii ATCC 33638] gi|238699644|gb|EEP92389.1| Exodeoxyribonuclease 10 [Yersinia kristensenii ATCC 33638] Length = 219 Score = 38.8 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 23/186 (12%), Positives = 50/186 (26%), Gaps = 24/186 (12%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET G I+EI +V++++ + P SP+ Sbjct: 5 VIDTETCGF---EGGIVEIASVDVVNGVV--------INPMSDLVSPDRPISLDAMII-- 51 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDTLS 128 + + +A + A ++ L + I TL Sbjct: 52 ---------HHITEEMVEGKPRIAVAVRKYQGSPYYVAHNAPFDRGVLPEMGGQWICTLK 102 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +AR +P ++ L + +S + + + + Sbjct: 103 LARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIMRDSGWNAEQM 162 Query: 189 EDRFFK 194 + + Sbjct: 163 VEVTQQ 168 >gi|197322426|ref|YP_002154699.1| putative oligoribonuclease [Feldmannia species virus] gi|197130493|gb|ACH46829.1| putative oligoribonuclease [Feldmannia species virus] Length = 250 Score = 38.8 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 12/96 (12%), Positives = 21/96 (21%), Gaps = 1/96 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDEFL 70 DIET+ LD ++EI V + V + P + Sbjct: 26 IDIETSSLDFSTSDVLEIAIVVTDSGLNVWDSLHVVIHHPINILMLKSSNWCKEKFCSRS 85 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 + + + I Sbjct: 86 YGGNGLFDDCHYSNTSITDATHLMLNFFEYYSTHEI 121 >gi|149190027|ref|ZP_01868305.1| exonuclease I [Vibrio shilonii AK1] gi|148836193|gb|EDL53152.1| exonuclease I [Vibrio shilonii AK1] Length = 473 Score = 38.8 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 7/150 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD ET G+ DR + V +++ ++ P L Sbjct: 10 FFDYETWGVSPAKDRACQFAGVRTDENFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQ 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L + S +F + + E N G+ + ID + Sbjct: 70 LCQEKGLSEP-----EFIAKIHHELATPNTTSL-GYNSIRFDDEVTRYTCYRNFIDPYAW 123 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 + + S + L+ + + + Sbjct: 124 SWQNGNSRWDLLDVMRACHALRPEGIEWPE 153 >gi|110803333|ref|YP_699430.1| exonuclease family protein [Clostridium perfringens SM101] gi|110683834|gb|ABG87204.1| exonuclease family protein [Clostridium perfringens SM101] Length = 300 Score = 38.8 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 1/152 (0%) Query: 24 DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSE 82 + IIEIGA++L + + F+ ++ P+ K +P+ + + GIT++ LKD F Sbjct: 37 NEIIEIGAIKLNKFMQEVDEFKTYIKPSVFKVLNPKIIDITGITEDHLKDGIKFEDAMDN 96 Query: 83 FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN 142 DF E + NA+ I + L Sbjct: 97 LKDFIGEDDILCSWATDDIVHIVNNAKYHSYKNISWIKKYIDIQKYCTKILAHKKSLSLK 156 Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + I I H AL D+ ++V+ ++ Sbjct: 157 HALEELKIKIDKSKLHDALNDAVYTAEVFKRL 188 >gi|54298969|ref|YP_125338.1| ribonuclease T [Legionella pneumophila str. Paris] gi|53752754|emb|CAH14189.1| ribonuclease T [Legionella pneumophila str. Paris] Length = 207 Score = 38.8 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 64/187 (34%), Gaps = 14/187 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDY-----SKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D+ET G+D + + ++E+ V L K + F+ L G + ++L + Sbjct: 22 VVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKESSYFEHILPFPGAELDQKSLAFNQ 81 Query: 65 ITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 I + Q A + HNA FD+ FI A ++R Sbjct: 82 IDPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIKAAIKRTGIK 141 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + L + G+ + H A+ D+ +D++ M+ Sbjct: 142 SP-FHAFTCFDTATLAGLIFGETVLAKAVQAAGLHFDSQEAHSAIYDAEKTADLFCLMIN 200 Query: 177 GGSQINF 183 +N Sbjct: 201 KWRMLNI 207 >gi|297802094|ref|XP_002868931.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297314767|gb|EFH45190.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 227 Score = 38.8 bits (88), Expect = 0.64, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 3/46 (6%) Query: 10 IVFDIETTGLDSKND--RIIEIGAVELLDYSKTN-RTFQVFLCPNG 52 + FD+ETT + I+E GA+ + +F + P Sbjct: 11 VFFDLETTVPNKVGQYFHILEFGAIIVCPRKLEELESFTTLIQPKD 56 >gi|254453711|ref|ZP_05067148.1| exonuclease [Octadecabacter antarcticus 238] gi|198268117|gb|EDY92387.1| exonuclease [Octadecabacter antarcticus 238] Length = 205 Score = 38.8 bits (88), Expect = 0.64, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 7/115 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I D+ET G I +IG + + +T+ V + P P +LHGI+ Sbjct: 19 RFIALDVETAGKTIAG--ICQIGLCFVSNTGAV-QTYSVLIEPE-EPFEPFNTELHGISA 74 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + ++ +F +++ +D N + ++ FD + + R + Sbjct: 75 DTVEGAGTFPEVYAALFDLLNTH---SLVQHSTFDEKALTSACARYGLPMITSHW 126 >gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506] gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506] Length = 981 Score = 38.8 bits (88), Expect = 0.65, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 10/19 (52%) Query: 9 KIVFDIETTGLDSKNDRII 27 + D ETTGLD I+ Sbjct: 393 FVAVDTETTGLDPMQADIV 411 >gi|294669159|ref|ZP_06734240.1| oligoribonuclease [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308903|gb|EFE50146.1| oligoribonuclease [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 185 Score = 38.8 bits (88), Expect = 0.65, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +RIIE+ + Sbjct: 11 LDMEMTGLDPERERIIEVAMI 31 >gi|88858891|ref|ZP_01133532.1| oligoribonuclease [Pseudoalteromonas tunicata D2] gi|88819117|gb|EAR28931.1| oligoribonuclease [Pseudoalteromonas tunicata D2] Length = 181 Score = 38.8 bits (88), Expect = 0.65, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ K D+I+EI Sbjct: 11 LDLEMTGLEPKTDKILEIA 29 >gi|269219723|ref|ZP_06163577.1| oligoribonuclease [Actinomyces sp. oral taxon 848 str. F0332] gi|269210965|gb|EEZ77305.1| oligoribonuclease [Actinomyces sp. oral taxon 848 str. F0332] Length = 214 Score = 38.8 bits (88), Expect = 0.65, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%) Query: 10 IV-FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50 IV D E TGLD D ++E+ V + + + V + P Sbjct: 5 IVWIDCEMTGLDLNVDELVEVAVVITDSELNPVDEGIDVLIRP 47 >gi|226493850|ref|NP_001151909.1| exonuclease [Zea mays] gi|195650883|gb|ACG44909.1| exonuclease [Zea mays] Length = 302 Score = 38.8 bits (88), Expect = 0.65, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 9/102 (8%) Query: 6 KMR--KIVFDIETTGLDSKN-DR--IIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEA 59 MR + FD+ETT + R ++E GA+ + ++ + P Sbjct: 2 TMRDEIVFFDVETTAPSAAGPGRWWLLEFGAILVCPRKLVEVGSYDTLIRPGDLSAVSRR 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 + + P F + + +D + W HN + Sbjct: 62 F-TDDVEAAIMASAPPFKDVADKIFDILDG--RVWAGHNIQR 100 >gi|195331405|ref|XP_002032393.1| GM23540 [Drosophila sechellia] gi|194121336|gb|EDW43379.1| GM23540 [Drosophila sechellia] Length = 184 Score = 38.8 bits (88), Expect = 0.65, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 1/64 (1%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEALKLHGITDEFLK 71 D+E TGLD + D+I+E+ + F + + Sbjct: 15 DLEMTGLDIEKDKILEVACIITDQDLNVKSEGACFAINHPQEVYDSMNEWCMEQHYKSGL 74 Query: 72 DKPS 75 Sbjct: 75 IDRC 78 >gi|26988099|ref|NP_743524.1| exonuclease I [Pseudomonas putida KT2440] gi|24982826|gb|AAN66988.1|AE016327_3 exodeoxyribonuclease I [Pseudomonas putida KT2440] Length = 477 Score = 38.8 bits (88), Expect = 0.65, Method: Composition-based stats. Identities = 18/160 (11%), Positives = 45/160 (28%), Gaps = 7/160 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTG++ + DR +++ + D ++ + ++ P+ H Sbjct: 9 DYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILP------HPAACLVTG 62 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 P + F + +A G+ D + Sbjct: 63 ITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAREW 122 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + S + ++ + Y + + L ++ Sbjct: 123 QGGNSRWDLIDIVRTAYALRPEGIEWPQQDGRTSLRLELL 162 >gi|312172662|emb|CBX80918.1| exodeoxyribonuclease X [Erwinia amylovora ATCC BAA-2158] Length = 221 Score = 38.8 bits (88), Expect = 0.66, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 20/174 (11%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL ++E+ +V++++ + P+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCGL---QGGVVEVASVDVINGQIV-NPMSDLISPD-RPISRQAIAVHKITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP+ + + ++AHNA FD + I T+++A Sbjct: 59 RGKPTIEQAIGRYH-----GSPFYVAHNASFDRRMLPE----------MHGEWICTMTLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 RR P + SL + + +S ++ A + ++ S + Sbjct: 104 RRLWPGLKYTNESLRQSLQLEVSPPAELHAHRALYDCYVTAALLIRIMSFSGWD 157 >gi|195573238|ref|XP_002104602.1| GD18354 [Drosophila simulans] gi|194200529|gb|EDX14105.1| GD18354 [Drosophila simulans] Length = 208 Score = 38.8 bits (88), Expect = 0.66, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+E TGLD + D+I+E+ + P N P+ + + Sbjct: 39 DLEMTGLDIEKDKILEVACIITDQDLNVKSE-----GPCFAINHPQEVYDSMNEWCMEQH 93 Query: 73 K 73 Sbjct: 94 Y 94 >gi|118595061|ref|ZP_01552408.1| putative DNA exonuclease X [Methylophilales bacterium HTCC2181] gi|118440839|gb|EAV47466.1| putative DNA exonuclease X [Methylophilales bacterium HTCC2181] Length = 220 Score = 38.8 bits (88), Expect = 0.66, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 7/91 (7%) Query: 11 VFDIETTGLDSKNDRI-IEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +FD ETTG +ND + IE +E+ D + +F P G+ AL H I D Sbjct: 6 IFDTETTG---RNDPVLIEAAWIEIRDIANFELGTSFCERFNP-GKPIELGALATHHIYD 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98 E L D P SS + + N Sbjct: 62 EELVDCPPASSFALPTPCEYLIGHNIDYDWN 92 >gi|313500409|gb|ADR61775.1| SbcB [Pseudomonas putida BIRD-1] Length = 477 Score = 38.8 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 18/160 (11%), Positives = 45/160 (28%), Gaps = 7/160 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTG++ + DR +++ + D ++ + ++ P+ H Sbjct: 9 DYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILP------HPAACLVTG 62 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 P + F + +A G+ D + Sbjct: 63 ITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAREW 122 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + S + ++ + Y + + L ++ Sbjct: 123 QGGNSRWDLIDIVRTAYALRPEGIQWPQQDGRTSLRLELL 162 >gi|255523821|ref|ZP_05390786.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] gi|255512524|gb|EET88799.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] Length = 998 Score = 38.8 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 I DIETT D+K RI AV++ + + F + P+ Sbjct: 11 IFLDIETTHTDNKVIRIC---AVKIKNNEIS--RFSSLVNPD 47 >gi|62859267|ref|NP_001016146.1| exoribonuclease 1 [Xenopus (Silurana) tropicalis] gi|89268181|emb|CAJ81479.1| exonuclease 1 [Xenopus (Silurana) tropicalis] Length = 345 Score = 38.8 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSK-NDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 V D E T G + IIE V L ++ + FQ ++ P S + L G Sbjct: 128 VIDFEATCEEGNSTDYTHEIIEFPIVLLNTHTLEIEDVFQRYVRPEINPQLSEFCVNLTG 187 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115 IT + + F + D+ E+ + + + + Sbjct: 188 ITQDIVDKSDIFPDVLRSVVDWMREKELGTKYKYAILTDGSWDMSKFLNMQCRVSRLKYP 247 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P ++ L ++ ++ G+T R G ++ + + M+ Sbjct: 248 RFAKKWINICKSYGNFYKVPRTQTKLTTMLEKLGMTYDGRLHSGVDDSKNI-ARIAAHML 306 Query: 176 VGGSQINFG 184 G ++ Sbjct: 307 QDGCELRVN 315 >gi|323466912|gb|ADX70599.1| DNA polymerase III alpha chain [Lactobacillus helveticus H10] Length = 177 Score = 38.8 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 5/160 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET ++ + V + D +R F + P +++H IT Sbjct: 1 MNFIAMDFETANHFPESA--CSLALVMVRDNKIVDR-FYTVINPQ-MSFDARNIQVHQIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +K+ P+ + + AHN +FD + L R N + I Sbjct: 57 ADDVKNAPT-MAEVWPKIKGLYQPGMLVAAHNTRFDTNVMRQSLARYNIEEPHYLVIDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + + + L+++ + + H + ++ Sbjct: 116 ATSKLFEPELPNHKLDTVSDALDVELWHHHNALSDSEACA 155 >gi|270004806|gb|EFA01254.1| three prime repair exonuclease [Tribolium castaneum] Length = 232 Score = 38.8 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%) Query: 9 KIVFDIETTGLDS---KNDRIIEIGAVELL 35 + FD+ETTGL RI E AV + Sbjct: 7 FVFFDLETTGLPKFEENRTRITEFCAVAVR 36 >gi|255068356|ref|ZP_05320211.1| oligoribonuclease [Neisseria sicca ATCC 29256] gi|255047405|gb|EET42869.1| oligoribonuclease [Neisseria sicca ATCC 29256] Length = 185 Score = 38.8 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +RIIE+ + Sbjct: 11 LDMEMTGLDPERERIIEVAMI 31 >gi|161507225|ref|YP_001577179.1| DNA polymerase III alpha chain [Lactobacillus helveticus DPC 4571] gi|160348214|gb|ABX26888.1| DNA polymerase III alpha chain [Lactobacillus helveticus DPC 4571] Length = 177 Score = 38.8 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 5/160 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET ++ + V + D +R F + P +++H IT Sbjct: 1 MNFIAMDFETANHFPESA--CSLALVMVRDNKIVDR-FYTVINPQ-MSFDARNIQVHQIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +K+ P+ + + AHNA+FD + L R N + I Sbjct: 57 ADDVKNAPT-MAEVWPKIKGLYQPGMLVAAHNARFDTNVMRQSLARYNIEEPHYLVIDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + + + L+++ + + H + ++ Sbjct: 116 ATSKLFEPELPNHKLDTVSDALDVELWHHHNALSDSEACA 155 >gi|145295382|ref|YP_001138203.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum R] gi|140845302|dbj|BAF54301.1| hypothetical protein [Corynebacterium glutamicum R] Length = 237 Score = 38.8 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 51/184 (27%), Gaps = 8/184 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG++ + RI+ V + ++ P T+ Sbjct: 22 FDLETTGVNPFDTRIVTSAMVTITSKGA--EPIELLADPGIEIPEAATAVHGITTEHARA 79 Query: 72 DKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +E I NA +D+ + D L + Sbjct: 80 NGRPHDEVLAETISRLRAGWQAGLSVIVFNASYDLTVLRNHDPSFTIDGLVYDPFVIDKV 139 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVGGSQINFGF 185 R + + +H + AL + + ++ ++ + F Sbjct: 140 KDRYRKGKRTLTDMCAHYDVQLGNAHEATSDALAAARIAWKQVRLWPELTKMTGEELMEF 199 Query: 186 KTNE 189 + Sbjct: 200 QAVN 203 >gi|21324010|dbj|BAB98636.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032] Length = 245 Score = 38.8 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 51/184 (27%), Gaps = 8/184 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG++ + RI+ V + ++ P T+ Sbjct: 30 FDLETTGVNPFDTRIVTSAMVTITSKGA--EPIELLADPGIEIPEAATAVHGITTEHARA 87 Query: 72 DKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +E I NA +D+ + D L + Sbjct: 88 NGRPHDEVLAETISRLRAGWQAGLSVIVFNASYDLTVLRNHDPSFTIDGLVYDPFVIDKV 147 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVGGSQINFGF 185 R + + +H + AL + + ++ ++ + F Sbjct: 148 KDRYRKGKRTLTDMCAHYDVQLGNAHEATSDALAAARIAWKQVRLWPELTKMTGEELMEF 207 Query: 186 KTNE 189 + Sbjct: 208 QAVN 211 >gi|19552464|ref|NP_600466.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum ATCC 13032] gi|62390130|ref|YP_225532.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum ATCC 13032] gi|41325466|emb|CAF19946.1| putative DNA polymerase III alpha subunit, the Gram-positive type [Corynebacterium glutamicum ATCC 13032] Length = 237 Score = 38.8 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 51/184 (27%), Gaps = 8/184 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG++ + RI+ V + ++ P T+ Sbjct: 22 FDLETTGVNPFDTRIVTSAMVTITSKGA--EPIELLADPGIEIPEAATAVHGITTEHARA 79 Query: 72 DKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +E I NA +D+ + D L + Sbjct: 80 NGRPHDEVLAETISRLRAGWQAGLSVIVFNASYDLTVLRNHDPSFTIDGLVYDPFVIDKV 139 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVGGSQINFGF 185 R + + +H + AL + + ++ ++ + F Sbjct: 140 KDRYRKGKRTLTDMCAHYDVQLGNAHEATSDALAAARIAWKQVRLWPELTKMTGEELMEF 199 Query: 186 KTNE 189 + Sbjct: 200 QAVN 203 >gi|300780020|ref|ZP_07089876.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC 33030] gi|300534130|gb|EFK55189.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC 33030] Length = 341 Score = 38.8 bits (88), Expect = 0.68, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 15/52 (28%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 + ++TT + R++ + AV D F G Sbjct: 19 YVALYVQTTNIHPSTGRLVTLDAVAFDDSGVVGEEFHRIFNVGGDPGPMHMH 70 >gi|254450798|ref|ZP_05064235.1| exonuclease [Octadecabacter antarcticus 238] gi|198265204|gb|EDY89474.1| exonuclease [Octadecabacter antarcticus 238] Length = 206 Score = 38.8 bits (88), Expect = 0.68, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 7/115 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I D+ET G I +IG + + +T+ V + P P +LHGI+ Sbjct: 20 RFIALDVETAGKTIAG--ICQIGLCFVSNTGAV-QTYSVLIEPE-EPFEPFNTELHGISS 75 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + + +F +++ +D N + ++ FD + + R + Sbjct: 76 DTVAGAGTFPEVYAALFDLLNTH---SLVQHSTFDEKALTSACARYGLPMITSHW 127 >gi|323491900|ref|ZP_08097072.1| oligoribonuclease [Vibrio brasiliensis LMG 20546] gi|323313843|gb|EGA66935.1| oligoribonuclease [Vibrio brasiliensis LMG 20546] Length = 181 Score = 38.8 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + ++IEI Sbjct: 11 IDLEMTGLDPETHKVIEIA 29 >gi|282854757|ref|ZP_06264092.1| exonuclease [Propionibacterium acnes J139] gi|282582339|gb|EFB87721.1| exonuclease [Propionibacterium acnes J139] Length = 205 Score = 38.8 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD +D +IE+ A+ V + P + + + Sbjct: 8 IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPESQWLDHMNDFVRDMH 63 >gi|213692662|ref|YP_002323248.1| hypothetical protein Blon_1795 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524123|gb|ACJ52870.1| hypothetical protein Blon_1795 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458813|dbj|BAJ69434.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 189 Score = 38.8 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 12 FDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 DIETTG D ++D ++EIG + ++ R ++ + P H + Sbjct: 11 VDIETTGTDPRHDLMLEIGLRCTSMDAKTEYAR-YESVIKPGVLPTDRSFAYAHRMH 66 >gi|73958918|ref|XP_851106.1| PREDICTED: similar to CG6393-PA, isoform A [Canis familiaris] Length = 279 Score = 38.8 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 56/177 (31%), Gaps = 6/177 (3%) Query: 10 IVFDIETT----GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKN-SPEALKLH 63 IV D E+T G ++ IIE AV L + F ++ P S ++L Sbjct: 38 IVIDFESTCWNDGKHHQSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPVLSEFCMELT 97 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + + S+F + + + A N+E++ + Sbjct: 98 GIKQAQVDEGVPLRICLSQFCKWIQKIQQQKKIIFATGISDLSNSEVKLCAFVTWSDWDL 157 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L ++ + + +T + S L +V I+ + Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFYRRKPKGLSGALQEVGIEFLGQEHS 214 >gi|87121900|ref|ZP_01077785.1| oligoribonuclease [Marinomonas sp. MED121] gi|86162698|gb|EAQ63978.1| oligoribonuclease [Marinomonas sp. MED121] Length = 183 Score = 38.8 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 43/182 (23%), Gaps = 17/182 (9%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-------LCPNGRKNSPEALKLHG 64 D+E TGLD + + IIEI + T++ V + Sbjct: 11 IDLEMTGLDPEKNTIIEIATI------VTDKHLNVLSEGPNLAIHQPLSVMDAMDEWCTS 64 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + K + S G + +D R + Sbjct: 65 HHGQSGLTKRVLETQMSMSQAELETIQF----LEKYVPKGVSPICGNSVGQDRRFLYRYM 120 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 L + + L KR+ + + I + + F Sbjct: 121 PALEAYFHYRYIDVSTIKELAKRWQPEVLDGFSKKGSHLAMDDIKESIAELAFYREQFFN 180 Query: 185 FK 186 F Sbjct: 181 FN 182 >gi|309972889|gb|ADO96090.1| Oligoribonuclease [Haemophilus influenzae R2846] Length = 182 Score = 38.8 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ + +RIIEI Sbjct: 11 IDLEMTGLEPEKERIIEIA 29 >gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense MSR-1] Length = 925 Score = 38.8 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 12/19 (63%) Query: 9 KIVFDIETTGLDSKNDRII 27 ++ FD ETTGLD ++ Sbjct: 335 QVAFDTETTGLDPLRAELV 353 >gi|62901864|gb|AAY18883.1| CGI-114 [synthetic construct] Length = 229 Score = 38.8 bits (88), Expect = 0.70, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD + D+IIE+ + Sbjct: 34 RMVWVDLEMTGLDIEKDQIIEMACL 58 >gi|229847336|ref|ZP_04467438.1| oligoribonuclease [Haemophilus influenzae 7P49H1] gi|229809761|gb|EEP45485.1| oligoribonuclease [Haemophilus influenzae 7P49H1] Length = 182 Score = 38.8 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ + +RIIEI Sbjct: 11 IDLEMTGLEPEKERIIEIA 29 >gi|254372051|ref|ZP_04987544.1| oligoribonuclease [Francisella tularensis subsp. novicida GA99-3549] gi|254375197|ref|ZP_04990677.1| oligoribonuclease [Francisella novicida GA99-3548] gi|151569782|gb|EDN35436.1| oligoribonuclease [Francisella novicida GA99-3549] gi|151572915|gb|EDN38569.1| oligoribonuclease [Francisella novicida GA99-3548] gi|328676136|gb|AEB27006.1| Oligoribonuclease [Francisella cf. novicida Fx1] Length = 178 Score = 38.8 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +IIEI A+ Sbjct: 10 IDLEMTGLDVDSCKIIEIAAI 30 >gi|56478238|ref|YP_159827.1| hypothetical protein ebA4923 [Aromatoleum aromaticum EbN1] gi|56314281|emb|CAI08926.1| hypothetical protein ebA4923 [Aromatoleum aromaticum EbN1] Length = 244 Score = 38.8 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNG 52 R ++ + E TGLD R++ +GA+ + + +F L P+ Sbjct: 74 RYVIVNTEATGLDLDAARLLAVGAIAVDGGLLSPAASFYARLEPDP 119 >gi|313884945|ref|ZP_07818697.1| DNA polymerase III, epsilon subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312619636|gb|EFR31073.1| DNA polymerase III, epsilon subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 199 Score = 38.8 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 3/88 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+E T + ++ +II++ AV + F F+ L GIT + Sbjct: 7 YIAFDLEFTSFE-EDSQIIQVSAVRFKQGQEVA-HFDSFVN-TDHAIPSFISGLTGITLD 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIA 96 ++ P ++ +EF DF + Sbjct: 64 QIQAAPKIDTVMNEFKDFVGDLPLIGYN 91 >gi|331698794|ref|YP_004335033.1| Oligoribonuclease [Pseudonocardia dioxanivorans CB1190] gi|326953483|gb|AEA27180.1| Oligoribonuclease [Pseudonocardia dioxanivorans CB1190] Length = 204 Score = 38.8 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39 R + D E TGLD + D +IEI AV + D Sbjct: 4 RLVWIDCEMTGLDLQRDALIEI-AVLVTDGDL 34 >gi|312962237|ref|ZP_07776729.1| exonuclease [Pseudomonas fluorescens WH6] gi|311283574|gb|EFQ62163.1| exonuclease [Pseudomonas fluorescens WH6] Length = 180 Score = 38.8 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 5/112 (4%) Query: 9 KIVFDIE-TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63 ++ D+E TT G +IEIGA + + FQ F+ P R +P +L Sbjct: 4 WLIIDLEATTDEGGWPVTEMEVIEIGASLVNRQGRELDHFQRFVRPLRRPLLTPFCRQLT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 IT + + ++ F + + A + D + EL+ Sbjct: 64 HITQANIDAAAPVTEVWPLFERWLGQHQARLEGWASWGDYDRVQLELEWQRH 115 >gi|28572517|ref|NP_789297.1| oligoribonuclease [Tropheryma whipplei TW08/27] gi|81839179|sp|Q83HW9|ORN_TROW8 RecName: Full=Oligoribonuclease gi|28410649|emb|CAD67035.1| oligoribonuclease [Tropheryma whipplei TW08/27] Length = 184 Score = 38.8 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 7/21 (33%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D E TGL+ + D ++E+ + Sbjct: 13 VDCEMTGLNPERDELLEVAVI 33 >gi|145637656|ref|ZP_01793311.1| oligoribonuclease [Haemophilus influenzae PittHH] gi|145269179|gb|EDK09127.1| oligoribonuclease [Haemophilus influenzae PittHH] Length = 182 Score = 38.8 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ + +RIIEI Sbjct: 11 IDLEMTGLEPEKERIIEIA 29 >gi|148549564|ref|YP_001269666.1| exonuclease I [Pseudomonas putida F1] gi|148513622|gb|ABQ80482.1| Exodeoxyribonuclease I subunit C [Pseudomonas putida F1] Length = 477 Score = 38.8 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 18/160 (11%), Positives = 45/160 (28%), Gaps = 7/160 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTG++ + DR +++ + D ++ + ++ P+ H Sbjct: 9 DYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILP------HPAACLVTG 62 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 P + F + +A G+ D + Sbjct: 63 ITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAREW 122 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + S + ++ + Y + + L ++ Sbjct: 123 QGGNSRWDLIDIVRTAYALRPEGIEWPQQDGRTSLRLELL 162 >gi|148652620|ref|YP_001279713.1| oligoribonuclease [Psychrobacter sp. PRwf-1] gi|148571704|gb|ABQ93763.1| Exonuclease, RNase T and DNA polymerase III [Psychrobacter sp. PRwf-1] Length = 193 Score = 38.8 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 50/175 (28%), Gaps = 5/175 (2%) Query: 12 FDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+E TGLD+ ND IIEI V D + + + +K + + Sbjct: 21 IDLEMTGLDTMNDDIIEIATIVTDEDLNILAEGPVFAIKVSDQKLNAMDDWNTKQHGQSG 80 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 S + + N D G I +D +R + L Sbjct: 81 LIDRVRRSSVTLEQA----EQETIAFLNKWVDEGKSPMCGNSICQDRRFLARQMPQLERF 136 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + + LC R+ I + + I+ + Q F Sbjct: 137 FHYRNLDVSSIKELCYRWRPDILKGVEKTGSHLAMDDIRDSIRELKHYRQHFFKL 191 >gi|13097411|gb|AAH03445.1| Rexo2 protein [Mus musculus] Length = 205 Score = 38.8 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 1 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 34 >gi|325068353|ref|ZP_08127026.1| Exonuclease RNase T and DNA polymerase III [Actinomyces oris K20] Length = 210 Score = 38.8 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51 D E TGLD D +IE+ V + V + P Sbjct: 17 IDCEMTGLDQSADALIEVAVVVTDYELKPLAEGIDVLIKPP 57 >gi|315605967|ref|ZP_07880998.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 180 str. F0310] gi|315312249|gb|EFU60335.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 180 str. F0310] Length = 250 Score = 38.8 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37 FD ETTG+ DR++ V +D Sbjct: 11 FDTETTGVRPLKDRLVTAALVLRIDG 36 >gi|326773762|ref|ZP_08233045.1| oligoribonuclease [Actinomyces viscosus C505] gi|326636992|gb|EGE37895.1| oligoribonuclease [Actinomyces viscosus C505] Length = 210 Score = 38.8 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51 D E TGLD D +IE+ V + V + P Sbjct: 17 IDCEMTGLDQSADALIEVAVVVTDYELKPLAEGIDVLIKPP 57 >gi|254823127|ref|ZP_05228128.1| oligoribonuclease [Mycobacterium intracellulare ATCC 13950] Length = 215 Score = 38.8 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%) Query: 7 MR-KIV-FDIETTGLDSKNDRIIEIGAV 32 MR ++V D E TGLD +D++IEI A+ Sbjct: 1 MRDELVWIDCEMTGLDLGSDKLIEIAAL 28 >gi|118464888|ref|YP_880896.1| oligoribonuclease [Mycobacterium avium 104] gi|254774490|ref|ZP_05216006.1| oligoribonuclease [Mycobacterium avium subsp. avium ATCC 25291] gi|166216267|sp|A0QDA8|ORN_MYCA1 RecName: Full=Oligoribonuclease gi|118166175|gb|ABK67072.1| oligoribonuclease [Mycobacterium avium 104] Length = 215 Score = 38.8 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%) Query: 7 MR-KIV-FDIETTGLDSKNDRIIEIGAV 32 MR ++V D E TGLD +D++IEI A+ Sbjct: 1 MRDELVWIDCEMTGLDLGSDKLIEIAAL 28 >gi|41408418|ref|NP_961254.1| oligoribonuclease [Mycobacterium avium subsp. paratuberculosis K-10] gi|48428193|sp|P61651|ORN_MYCPA RecName: Full=Oligoribonuclease gi|41396774|gb|AAS04637.1| hypothetical protein MAP_2320 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 215 Score = 38.8 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%) Query: 7 MR-KIV-FDIETTGLDSKNDRIIEIGAV 32 MR ++V D E TGLD +D++IEI A+ Sbjct: 1 MRDELVWIDCEMTGLDLGSDKLIEIAAL 28 >gi|113968935|ref|YP_732728.1| oligoribonuclease [Shewanella sp. MR-4] gi|114048927|ref|YP_739477.1| oligoribonuclease [Shewanella sp. MR-7] gi|123130769|sp|Q0HMP6|ORN_SHESM RecName: Full=Oligoribonuclease gi|123131054|sp|Q0HR35|ORN_SHESR RecName: Full=Oligoribonuclease gi|113883619|gb|ABI37671.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4] gi|113890369|gb|ABI44420.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7] Length = 181 Score = 38.8 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ DR+IEI Sbjct: 11 IDLEMTGLEPDVDRVIEIA 29 >gi|301170471|emb|CBW30078.1| oligoribonuclease [Haemophilus influenzae 10810] Length = 182 Score = 38.8 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ + +RIIEI Sbjct: 11 IDLEMTGLEPEKERIIEIA 29 >gi|326382785|ref|ZP_08204475.1| oligoribonuclease [Gordonia neofelifaecis NRRL B-59395] gi|326198375|gb|EGD55559.1| oligoribonuclease [Gordonia neofelifaecis NRRL B-59395] Length = 199 Score = 38.8 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D E TGLD +D++IEI A+ Sbjct: 8 IDCEMTGLDVGSDKLIEIAAL 28 >gi|24372183|ref|NP_716225.1| oligoribonuclease [Shewanella oneidensis MR-1] gi|29611787|sp|Q8EJ78|ORN_SHEON RecName: Full=Oligoribonuclease gi|24346089|gb|AAN53670.1|AE015506_5 oligoribonuclease [Shewanella oneidensis MR-1] Length = 181 Score = 38.8 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ DR+IEI Sbjct: 11 IDLEMTGLEPDVDRVIEIA 29 >gi|322505025|emb|CAM42259.2| putative phosphotransferase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 575 Score = 38.8 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%) Query: 9 KIVFDIETT---GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKN-SPEALKLH 63 IV D+E T G + +IE V + + T FQ ++ P S +L Sbjct: 52 YIVLDLEATCEAGRRITDAEVIEFPMVLVDPRTATQVAEFQRYVRPVKNPMLSRFCTELT 111 Query: 64 GITDEFLKDKPSFSSIFSEFWDFF 87 GIT + + F ++ E F Sbjct: 112 GITQNMVSHRDPFPVVYCEALQFL 135 >gi|311743281|ref|ZP_07717088.1| possible DNA polymerase III subunit epsilon [Aeromicrobium marinum DSM 15272] gi|311313349|gb|EFQ83259.1| possible DNA polymerase III subunit epsilon [Aeromicrobium marinum DSM 15272] Length = 278 Score = 38.8 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 10/125 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ETTG+D DR++ L D + + P G A +HG+ L+ Sbjct: 59 LDLETTGVDPLRDRVVSFAL--LDDQVER----SGLVDP-GVPIPEGASAVHGLDAAALR 111 Query: 72 DKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 P+ +E D+ ++ + NA +D+ + AE +R D SR++ Sbjct: 112 GAPAPRGALTEVLDWVQQVVDRGVPLVVFNAPYDLTMLRAEAERWGLVQPDWSRLLVIDP 171 Query: 129 IARRK 133 Sbjct: 172 YVVDW 176 >gi|227893216|ref|ZP_04011021.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047] gi|227864985|gb|EEJ72406.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047] Length = 177 Score = 38.8 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 5/160 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET ++ + V + + +R F + P +++H IT Sbjct: 1 MNFIAMDFETANHYPESA--CSLALVMVRNNEIVDR-FYTVINPQ-MLFDARNIQVHQIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +K+ P+ + + AHNA+FD + L R N + I Sbjct: 57 AEDVKNAPT-MAEVWPKIKGLYQPGMLVAAHNARFDTNVMRQSLARYNIEEPHYLVIDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + + + L+++ + + H + ++ Sbjct: 116 ATSKLFEPELPNHKLDTVSSTLDVELWHHHNALSDSEACA 155 >gi|154338249|ref|XP_001565349.1| phosphotransferase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 574 Score = 38.8 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%) Query: 9 KIVFDIETT---GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKN-SPEALKLH 63 IV D+E T G + +IE V + + T FQ ++ P S +L Sbjct: 52 YIVLDLEATCEAGRRITDAEVIEFPMVLVDPRTATQVAEFQRYVRPVKNPMLSRFCTELT 111 Query: 64 GITDEFLKDKPSFSSIFSEFWDFF 87 GIT + + F ++ E F Sbjct: 112 GITQNMVSHRDPFPVVYCEALQFL 135 >gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7] gi|89517759|gb|EAS20415.1| DNA polymerase I [Flavobacteria bacterium BBFL7] Length = 946 Score = 38.8 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Query: 4 KNKMRK--IVFDIETTGLDSKNDRIIEIG 30 ++ M++ + FD ETTGLD ++ I Sbjct: 367 QSLMQQSSVCFDTETTGLDPLTAELVGIA 395 >gi|261364839|ref|ZP_05977722.1| oligoribonuclease [Neisseria mucosa ATCC 25996] gi|288566880|gb|EFC88440.1| oligoribonuclease [Neisseria mucosa ATCC 25996] Length = 182 Score = 38.8 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +RIIE+ + Sbjct: 11 LDMEMTGLDPERERIIEVAMI 31 >gi|1550617|dbj|BAA12312.1| RNase T [Vibrio alginolyticus] Length = 125 Score = 38.8 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK-TNRTFQVFLCP 50 +V D+ET G +++ D ++EI V L D T + P Sbjct: 20 VVVDVETAGFNAQTDALLEICTVTLKMDEDGVLHPASTIHFHVEP 64 >gi|238854851|ref|ZP_04645181.1| DNA polymerase III alpha chain [Lactobacillus jensenii 269-3] gi|260664138|ref|ZP_05864991.1| DNA polymerase subunit III alpha [Lactobacillus jensenii SJ-7A-US] gi|282933929|ref|ZP_06339277.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1] gi|313472352|ref|ZP_07812844.1| exonuclease [Lactobacillus jensenii 1153] gi|238832641|gb|EEQ24948.1| DNA polymerase III alpha chain [Lactobacillus jensenii 269-3] gi|239529790|gb|EEQ68791.1| exonuclease [Lactobacillus jensenii 1153] gi|260562024|gb|EEX27993.1| DNA polymerase subunit III alpha [Lactobacillus jensenii SJ-7A-US] gi|281302018|gb|EFA94272.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1] Length = 177 Score = 38.8 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 5/160 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET ++ + V + + +R F + P + +H IT Sbjct: 1 MNFIAMDFETANRHPESA--CSLALVMVRNNKIADR-FYTVINPQ-MPFDGRNISVHQIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +KD P+ + + AHNAKFD + L R + I Sbjct: 57 PSDVKDAPT-MAEVWPKIKDLYQPGMLVAAHNAKFDANVLKMSLARYDIAEPHYLVIDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + + + LN++ + + + H + ++ Sbjct: 116 KTSRLFEPDLPNHKLNTVSEALDVELWHHHNALSDSEACA 155 >gi|89255617|ref|YP_512978.1| oligoribonuclease [Francisella tularensis subsp. holarctica LVS] gi|134302673|ref|YP_001122642.1| oligoribonuclease [Francisella tularensis subsp. tularensis WY96-3418] gi|156501565|ref|YP_001427630.1| oligoribonuclease [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010118|ref|ZP_02275049.1| oligoribonuclease [Francisella tularensis subsp. holarctica FSC200] gi|187932223|ref|YP_001892208.1| oligoribonuclease [Francisella tularensis subsp. mediasiatica FSC147] gi|254367012|ref|ZP_04983048.1| oligoribonuclease [Francisella tularensis subsp. holarctica 257] gi|254368614|ref|ZP_04984630.1| oligoribonuclease [Francisella tularensis subsp. holarctica FSC022] gi|290953723|ref|ZP_06558344.1| oligoribonuclease [Francisella tularensis subsp. holarctica URFT1] gi|295312909|ref|ZP_06803630.1| oligoribonuclease [Francisella tularensis subsp. holarctica URFT1] gi|122501292|sp|Q2A5M3|ORN_FRATH RecName: Full=Oligoribonuclease gi|166216258|sp|A7N9M1|ORN_FRATF RecName: Full=Oligoribonuclease gi|166216260|sp|A4J020|ORN_FRATW RecName: Full=Oligoribonuclease gi|89143448|emb|CAJ78624.1| Oligoribonuclease [Francisella tularensis subsp. holarctica LVS] gi|134050450|gb|ABO47521.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418] gi|134252838|gb|EBA51932.1| oligoribonuclease [Francisella tularensis subsp. holarctica 257] gi|156252168|gb|ABU60674.1| oligoribonuclease [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121517|gb|EDO65708.1| oligoribonuclease [Francisella tularensis subsp. holarctica FSC022] gi|187713132|gb|ACD31429.1| oligoribonuclease (3'->5' exoribonuclease) [Francisella tularensis subsp. mediasiatica FSC147] Length = 178 Score = 38.8 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +IIEI A+ Sbjct: 10 IDLEMTGLDVDSCKIIEIAAI 30 >gi|145633650|ref|ZP_01789377.1| oligoribonuclease [Haemophilus influenzae 3655] gi|145635428|ref|ZP_01791129.1| oligoribonuclease [Haemophilus influenzae PittAA] gi|229845250|ref|ZP_04465383.1| oligoribonuclease [Haemophilus influenzae 6P18H1] gi|144985527|gb|EDJ92343.1| oligoribonuclease [Haemophilus influenzae 3655] gi|145267302|gb|EDK07305.1| oligoribonuclease [Haemophilus influenzae PittAA] gi|229811845|gb|EEP47541.1| oligoribonuclease [Haemophilus influenzae 6P18H1] Length = 182 Score = 38.8 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ + +RIIEI Sbjct: 11 IDLEMTGLEPEKERIIEIA 29 >gi|115379892|ref|ZP_01466953.1| DNA polymerase B, exonuclease [Stigmatella aurantiaca DW4/3-1] gi|310817667|ref|YP_003950025.1| DNA polymerase [Stigmatella aurantiaca DW4/3-1] gi|115363108|gb|EAU62282.1| DNA polymerase B, exonuclease [Stigmatella aurantiaca DW4/3-1] gi|309390739|gb|ADO68198.1| DNA polymerase [Stigmatella aurantiaca DW4/3-1] Length = 802 Score = 38.8 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 10/15 (66%), Positives = 13/15 (86%) Query: 12 FDIETTGLDSKNDRI 26 FD+ETTGL+ +DRI Sbjct: 161 FDLETTGLEPDHDRI 175 >gi|297559543|ref|YP_003678517.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843991|gb|ADH66011.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 216 Score = 38.4 bits (87), Expect = 0.80, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN 51 D E TGLD + D +IE+ + + + V + P Sbjct: 8 IDCEMTGLDFERDALIEVACLITDGELNILDEGVDVVIRPP 48 >gi|254448875|ref|ZP_05062331.1| oligoribonuclease [gamma proteobacterium HTCC5015] gi|198261565|gb|EDY85854.1| oligoribonuclease [gamma proteobacterium HTCC5015] Length = 185 Score = 38.4 bits (87), Expect = 0.80, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD+ ND IIEI Sbjct: 15 IDLEMTGLDTVNDEIIEIA 33 >gi|115314122|ref|YP_762845.1| oligoribonuclease [Francisella tularensis subsp. holarctica OSU18] gi|122325833|sp|Q0BNX6|ORN_FRATO RecName: Full=Oligoribonuclease gi|115129021|gb|ABI82208.1| oligoribonuclease [Francisella tularensis subsp. holarctica OSU18] Length = 178 Score = 38.4 bits (87), Expect = 0.80, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +IIEI A+ Sbjct: 10 IDLEMTGLDVDSCKIIEIAAI 30 >gi|260102518|ref|ZP_05752755.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus helveticus DSM 20075] gi|260083660|gb|EEW67780.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus helveticus DSM 20075] gi|328461804|gb|EGF34034.1| DNA polymerase III alpha chain [Lactobacillus helveticus MTCC 5463] Length = 177 Score = 38.4 bits (87), Expect = 0.81, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 5/160 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET ++ + V + D +R F + P +++H IT Sbjct: 1 MNFIAMDFETANHFPESA--CSLALVMVRDNKIVDR-FYTVINPQ-MSFDARNIQVHQIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +K+ P+ + + AHNA+FD + L R N + I Sbjct: 57 ADDVKNAPT-MAEVWPKIKGLYQPGMLVAAHNARFDTNVMRQSLARYNIEEPHYLVIDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + + + L+++ + + H + ++ Sbjct: 116 ATSKLFEPELPNHKLDTVSDALDVELWHHHNALSDSEACA 155 >gi|116666695|pdb|1ZBU|A Chain A, Crystal Structure Of Full-Length 3'-Exonuclease gi|116666696|pdb|1ZBU|B Chain B, Crystal Structure Of Full-Length 3'-Exonuclease gi|116666697|pdb|1ZBU|C Chain C, Crystal Structure Of Full-Length 3'-Exonuclease gi|116666698|pdb|1ZBU|D Chain D, Crystal Structure Of Full-Length 3'-Exonuclease Length = 349 Score = 38.4 bits (87), Expect = 0.81, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPN 51 + D E T G + IIE V L ++ + TFQ ++ P Sbjct: 132 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPE 177 >gi|254516802|ref|ZP_05128860.1| oligoribonuclease [gamma proteobacterium NOR5-3] gi|219674307|gb|EED30675.1| oligoribonuclease [gamma proteobacterium NOR5-3] Length = 184 Score = 38.4 bits (87), Expect = 0.81, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 MI + + D+E TGL + DR+IEI Sbjct: 1 MINEQ--NLVWVDLEMTGLVPETDRVIEIA 28 >gi|282164255|ref|YP_003356640.1| hypothetical protein MCP_1585 [Methanocella paludicola SANAE] gi|282156569|dbj|BAI61657.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 198 Score = 38.4 bits (87), Expect = 0.82, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 56/178 (31%), Gaps = 14/178 (7%) Query: 11 VFDIETTGL------DSKN-DRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPE 58 V D ETTGL + D I IGAV + + + + + Sbjct: 6 VIDTETTGLGKFDRANPGRVDYPISIGAVVADVNVVKKQVRCVDGMYSLIRIPDTSKADD 65 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDP 117 + +HGI E L P+ + + + F + A N FD F++ + P Sbjct: 66 TMLIHGILPEELDSAPAPTQVCLDLKALFAKYEAMPVGAWNYHFDKHFVDVLFRMARMLP 125 Query: 118 LD-PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R + +R + + + R + L L+ ++ Sbjct: 126 PSLVWREMMPERYSRLERYVQNHVTHDGVLRLEAHNAFNDCIRTLAVHAALNGYTFEL 183 >gi|332373288|gb|AEE61785.1| unknown [Dendroctonus ponderosae] Length = 220 Score = 38.4 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 14/166 (8%), Positives = 39/166 (23%), Gaps = 3/166 (1%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D+E TGL+ D+I+E+ + D + ++ + Sbjct: 44 RLVWIDMEMTGLNVDQDKIMEVACIVTDTDLNIVAEGLEIVINQPKETLDNMHEWCVKQH 103 Query: 67 DEFLKDKPSFSSIF--SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + S + D + + + G + + Sbjct: 104 GKTGLTEACLKSQTSLEQAEDSIMDFLRAHVTPHCSPLAGNSVYMDRFFLIKYMPKVHDY 163 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 I + + ++++ Sbjct: 164 LHYRIVDVSTIKELCRRWNTPVYKSVPKKEFQHRAQCDIKESINEL 209 >gi|311741567|ref|ZP_07715391.1| probable DNA polymerase III epsilon subunit [Corynebacterium pseudogenitalium ATCC 33035] gi|311303737|gb|EFQ79816.1| probable DNA polymerase III epsilon subunit [Corynebacterium pseudogenitalium ATCC 33035] Length = 442 Score = 38.4 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 5/93 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ET + I +IGAV D +T+ R++ P + + +HGIT + Sbjct: 102 AVDVET--ANDNWGSICQIGAVRFRDGQETDSRSWLCTPPPGLEHFADINVSIHGITADD 159 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 +K P+F+ + E +DF +AHNA+FD Sbjct: 160 VKGAPAFADVAKELFDFLGG--DVLVAHNAQFD 190 >gi|66472468|ref|NP_001018476.1| ERI1 exoribonuclease 2 [Danio rerio] gi|82228769|sp|Q502M8|ERI2_DANRE RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease domain-containing protein 1 gi|63100865|gb|AAH95637.1| Zgc:111991 [Danio rerio] Length = 555 Score = 38.4 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 60/234 (25%), Gaps = 16/234 (6%) Query: 10 IVFDIETTG---LDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64 I+ D E+T S IIE AV L + F ++ P R S +L G Sbjct: 36 IIIDFESTCWREKSSSGQEIIEFPAVLLSVCSGAVESEFHSYVQPQERPVLSAFCTELTG 95 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT + + P + S F + E G + D + Sbjct: 96 ITQDQVDSAPPLHVVLSRFSRWLRSLQEERGVVFLTDSSGAAPSAQLCAFVTWSDWDLGV 155 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ---- 180 L +RK S L + + L D+ I+ Sbjct: 156 CLLYECKRKQLSVPEALKNWIDLRATYKLFYN-RKPKGLRGALLDLGIEFTGREHSGLVD 214 Query: 181 ----INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 + D + R + + E H ++ Sbjct: 215 ARNTALLAQRMMTDGCQLSITSPERRAQVKPRPHTRPSGL--RERHTHLTNVKN 266 >gi|117919043|ref|YP_868235.1| oligoribonuclease [Shewanella sp. ANA-3] gi|166216589|sp|A0KSR0|ORN_SHESA RecName: Full=Oligoribonuclease gi|117611375|gb|ABK46829.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. ANA-3] Length = 181 Score = 38.4 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ DR+IEI Sbjct: 11 IDLEMTGLEPDVDRVIEIA 29 >gi|331646986|ref|ZP_08348085.1| putative cytoplasmic protein [Escherichia coli M605] gi|331044303|gb|EGI16434.1| putative cytoplasmic protein [Escherichia coli M605] Length = 382 Score = 38.4 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 44/167 (26%), Gaps = 15/167 (8%) Query: 13 DIETTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 D E+TGL +D II V L++ +CP + Sbjct: 9 DTESTGLSPASDALPETAIISDTGVPLVN---------TLICPPDTFK-ARSAAQAAHCI 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + F+ Q+ + I +NA FD F L + Sbjct: 59 TPAMVRDKFTPDKPASRIRTAVQDQDVIIYNASFDASFPGDLLAGARSVQCCMLARARHV 118 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 H R KH AL D+ V+ M Sbjct: 119 GEWSGWHGDWRLHRLDQAAAAVCFDWSGDKHRALADARACRAVWQFM 165 >gi|290998255|ref|XP_002681696.1| predicted protein [Naegleria gruberi] gi|284095321|gb|EFC48952.1| predicted protein [Naegleria gruberi] Length = 185 Score = 38.4 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 15/37 (40%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 D+E TGLD +D I+EI + + Sbjct: 13 VDMEMTGLDIDSDHILEIAVIITDGNLNIIAQLDSLI 49 >gi|213409417|ref|XP_002175479.1| 3'-5' exonuclease eri-1 [Schizosaccharomyces japonicus yFS275] gi|212003526|gb|EEB09186.1| 3'-5' exonuclease eri-1 [Schizosaccharomyces japonicus yFS275] Length = 311 Score = 38.4 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 43/138 (31%), Gaps = 10/138 (7%) Query: 3 RKNKMRKI-VFDIETT-----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN 55 + K+R + V D+E T G N IIE + + + F ++ P Sbjct: 58 KGMKLRYLLVVDVEATCEEGCGFSYMN-EIIEFPCLLYDLEQKRIIDEFHTYVKPRRIPT 116 Query: 56 -SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH-NAKFDVGFINAELQRI 113 S +L I + + + P F ++ +F ++ + + I N + Sbjct: 117 LSNYCKELTKIPQKLIDNAPPFKTVLDLLHEFLSKHDDKLIPPVNGPNTFEWSRLPKTAY 176 Query: 114 NKDPLDPSRIIDTLSIAR 131 + Sbjct: 177 HFRSQKNWAWACDGPWDM 194 >gi|209154444|gb|ACI33454.1| Histone mRNA 3-exonuclease 1 [Salmo salar] Length = 346 Score = 38.4 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 16/196 (8%) Query: 11 VFDIETTGL--DSK--NDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 V D E T + IIE V L ++ + TFQ ++ P S +KL G Sbjct: 129 VVDFEATCEQDNPADFTHEIIEFPMVLLNTHTLEIEDTFQEYVRPEVNTQLSEFCVKLTG 188 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQN---------AEWIAHNAKFDVGFINAELQRINK 115 IT + + D +F + + + E+ + + + Sbjct: 189 ITQKMVDDADTFPDVLEQVVLWLQEKELGTKYKYTLLTDGSWDMSKFMNTQCRLNSLRYP 248 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I L K P ++ L+S+ ++ G+ R H L DS ++ + ++M+ Sbjct: 249 QFAKKWINIKKLYGNFYKVPRTQTKLSSMLEKLGLKYEGRP-HSGLDDSRNIAHIAMRML 307 Query: 176 VGGSQINFGFKTNEDR 191 G Q+ + +E + Sbjct: 308 QDGCQLRINERMHEGQ 323 >gi|145296472|ref|YP_001139293.1| oligoribonuclease [Corynebacterium glutamicum R] gi|166216072|sp|A4QGM5|ORN_CORGB RecName: Full=Oligoribonuclease gi|140846392|dbj|BAF55391.1| hypothetical protein [Corynebacterium glutamicum R] Length = 219 Score = 38.4 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD K I+E+ A+ Sbjct: 18 RLVWVDLEMTGLDLKRHVIVEVAAL 42 >gi|50310933|ref|XP_455489.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644625|emb|CAG98197.1| KLLA0F08998p [Kluyveromyces lactis] Length = 306 Score = 38.4 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 2/57 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD ND+IIE+ + ++ + + Sbjct: 68 IDCEMTGLDHINDKIIEVCCIITDGQLNVADEDGYESVIHYDKSIMDNMNEWCINQH 124 >gi|19553671|ref|NP_601673.1| oligoribonuclease [Corynebacterium glutamicum ATCC 13032] gi|62391312|ref|YP_226714.1| oligoribonuclease [Corynebacterium glutamicum ATCC 13032] gi|23821913|sp|Q8NMU1|ORN_CORGL RecName: Full=Oligoribonuclease gi|21325244|dbj|BAB99866.1| Oligoribonuclease (3'->5' exoribonuclease) [Corynebacterium glutamicum ATCC 13032] gi|41326653|emb|CAF21135.1| Oligoribonuclease (3'->5' exoribonuclease) [Corynebacterium glutamicum ATCC 13032] Length = 219 Score = 38.4 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD K I+E+ A+ Sbjct: 18 RLVWVDLEMTGLDLKRHVIVEVAAL 42 >gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902] gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 879 Score = 38.4 bits (87), Expect = 0.84, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 50/184 (27%), Gaps = 20/184 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD ETTGLD+K +I+ F + N P G+ ++ Sbjct: 319 IAFDTETTGLDTKEAKIV---------------GFSFCMNENEAFYVPLTHNYLGVGEQI 363 Query: 70 -----LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 K + F + + + + + + K+P + Sbjct: 364 SLQSAKKAIEVIFNHFVIGHNLKYDFKIIQNNFDLNLPQKYADTMILAWLKNPSLRVNMD 423 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 D L + + ++ A D+++ Y+ + Sbjct: 424 DLALRLFNYETLHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNLETPLLE 483 Query: 185 FKTN 188 N Sbjct: 484 LAKN 487 >gi|317507722|ref|ZP_07965427.1| exonuclease [Segniliparus rugosus ATCC BAA-974] gi|316253975|gb|EFV13340.1| exonuclease [Segniliparus rugosus ATCC BAA-974] Length = 202 Score = 38.4 bits (87), Expect = 0.85, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37 D E TGL +D++IEI A+ Sbjct: 11 IDCEMTGLRPGHDQLIEIAALVTDGD 36 >gi|224827136|ref|ZP_03700232.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum 2002] gi|224600645|gb|EEG06832.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum 2002] Length = 202 Score = 38.4 bits (87), Expect = 0.85, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 16 TTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNG 52 TT LD ++ IGAV L + T+ + + P Sbjct: 37 TTSLDVAEAELLTIGAVRLSGNRIVTSEALDLLVKPGR 74 >gi|73536580|ref|XP_847714.1| hypothetical protein [Leishmania major strain Friedlin] gi|321438628|emb|CBZ12387.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 405 Score = 38.4 bits (87), Expect = 0.85, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 60/188 (31%), Gaps = 14/188 (7%) Query: 10 IVFDIETTGLDSKN---DRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKN-SPEALKL 62 IV D+E T + +IEI V + R+F F+ P +P +L Sbjct: 77 IVVDVEATCEQNNRNYPHEVIEIPGVLINVRTGQVDRARSFHTFVKPWRNPRLTPFCTQL 136 Query: 63 HGITDEFLKDKPS----FSSIFSEFWDFFNEQNAEWIAHNAKFDVG---FINAELQRINK 115 GIT E + PS +W+ A + +D + L+ Sbjct: 137 TGITQEVVDAAPSITEAIQLFEKWYWETIPRGAKTIFAADGPWDFKNFIHEHHILRDHVG 196 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P +D + + R H D++ ++ + + MM Sbjct: 197 FPSIFYEYLDIRTTFAHRLNHGVPIKLDAMLRKMNLRFDGRPHNGFDDAYNIARLAVAMM 256 Query: 176 VGGSQINF 183 G ++F Sbjct: 257 KAGCVLDF 264 >gi|68535589|ref|YP_250294.1| oligoribonuclease [Corynebacterium jeikeium K411] gi|68263188|emb|CAI36676.1| putative oligoribonuclease [Corynebacterium jeikeium K411] Length = 210 Score = 38.4 bits (87), Expect = 0.85, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 13/25 (52%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D E TGLD ++EI + Sbjct: 13 RLVWVDCEMTGLDPDQHVLVEIAVI 37 >gi|4929697|gb|AAD34109.1|AF151872_1 CGI-114 protein [Homo sapiens] Length = 205 Score = 38.4 bits (87), Expect = 0.86, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAV 32 M M R + D+E TGLD + D+IIE+ + Sbjct: 1 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACL 34 >gi|229087422|ref|ZP_04219556.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-44] gi|228695844|gb|EEL48695.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-44] Length = 207 Score = 38.4 bits (87), Expect = 0.87, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 53/182 (29%), Gaps = 16/182 (8%) Query: 9 KIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPE 58 I D E T G + IIE+G V +++ T+ ++ P + Sbjct: 6 FIFLDFEFTMPQNRKKPKGFFPE---IIEVGLVSVVN-CVVEDTYASYVRPETFSCLTER 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 K GI E + SF + + + + + P Sbjct: 62 CKKFLGIKQEAVDGGISFLELVEKLAQYEKRCQTTIVTWGNMDMKVLKHNCEAVGVTFPF 121 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +L R ++ L + YG KH LD + + K++ Sbjct: 122 SGECRDLSLEYKRFFGERNQTGLWKAIEAYGKV--GTGKHHCALDDAMTTYNIFKLVEKD 179 Query: 179 SQ 180 + Sbjct: 180 KE 181 >gi|329123183|ref|ZP_08251752.1| oligoribonuclease [Haemophilus aegyptius ATCC 11116] gi|327471528|gb|EGF16972.1| oligoribonuclease [Haemophilus aegyptius ATCC 11116] Length = 182 Score = 38.4 bits (87), Expect = 0.88, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ + +RIIEI Sbjct: 11 IDLEMTGLEPEKERIIEIA 29 >gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176] gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] Length = 879 Score = 38.4 bits (87), Expect = 0.88, Method: Composition-based stats. Identities = 11/18 (61%), Positives = 14/18 (77%) Query: 10 IVFDIETTGLDSKNDRII 27 I FD ETTGLD+K +I+ Sbjct: 319 IAFDTETTGLDTKEAKIV 336 >gi|86153587|ref|ZP_01071790.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842548|gb|EAQ59760.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13] Length = 879 Score = 38.4 bits (87), Expect = 0.88, Method: Composition-based stats. Identities = 11/18 (61%), Positives = 14/18 (77%) Query: 10 IVFDIETTGLDSKNDRII 27 I FD ETTGLD+K +I+ Sbjct: 319 IAFDTETTGLDTKEAKIV 336 >gi|300858788|ref|YP_003783771.1| hypothetical protein cpfrc_01371 [Corynebacterium pseudotuberculosis FRC41] gi|300686242|gb|ADK29164.1| hypothetical protein cpfrc_01371 [Corynebacterium pseudotuberculosis FRC41] gi|302206493|gb|ADL10835.1| Putative DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis C231] gi|302331048|gb|ADL21242.1| Putative DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis 1002] gi|308276735|gb|ADO26634.1| Putative DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis I19] Length = 453 Score = 38.4 bits (87), Expect = 0.88, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 3/95 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D+ET + I +IG V++ D T++ + P N + Sbjct: 106 FAAVDVET--ANDDWGSICQIGVVKVKDGVITDKC-EWLCQPPAAINHFAPANIAIHGIR 162 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103 K + AHNA+FD+ Sbjct: 163 PNDVKTAQPFSECFAEMLSFVGKLPLAAHNAQFDM 197 >gi|162449255|ref|YP_001611622.1| exonuclease [Sorangium cellulosum 'So ce 56'] gi|161159837|emb|CAN91142.1| predicted exonuclease [Sorangium cellulosum 'So ce 56'] Length = 191 Score = 38.4 bits (87), Expect = 0.88, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 7/124 (5%) Query: 9 KIVFDIETT----GLDSKN-DRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKN-SPEALK 61 +V D+E T G + IIEIGAV + + F+ P R + K Sbjct: 8 FLVIDLEATCDEEGRIPERIMEIIEIGAVLVDGATLEPVSELATFVRPVIRPRLTEFCTK 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L IT + P+F + F ++ A + + F + PL Sbjct: 68 LTTITQADVDAAPTFPEAIAALGRFVGQREALFCSWGDYDRKQFEIDAARWGVPLPLQGH 127 Query: 122 RIID 125 I Sbjct: 128 MNIK 131 >gi|170720191|ref|YP_001747879.1| exonuclease I [Pseudomonas putida W619] gi|169758194|gb|ACA71510.1| Exodeoxyribonuclease I [Pseudomonas putida W619] Length = 478 Score = 38.4 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALK 61 D ETTG++ + DR +++ V + ++ + ++ P+ A Sbjct: 9 DYETTGINPRCDRPLQVAGVRTDFELNEIDEPISLYCRPSDDILPHPAAC 58 >gi|116626444|ref|YP_828600.1| DNA polymerase B region [Candidatus Solibacter usitatus Ellin6076] gi|116229606|gb|ABJ88315.1| DNA polymerase B region [Candidatus Solibacter usitatus Ellin6076] Length = 784 Score = 38.4 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 11/15 (73%), Positives = 13/15 (86%) Query: 12 FDIETTGLDSKNDRI 26 FD+ETTGLD+ DRI Sbjct: 158 FDLETTGLDAGRDRI 172 >gi|326795181|ref|YP_004313001.1| exodeoxyribonuclease I [Marinomonas mediterranea MMB-1] gi|326545945|gb|ADZ91165.1| Exodeoxyribonuclease I [Marinomonas mediterranea MMB-1] Length = 482 Score = 38.4 bits (87), Expect = 0.90, Method: Composition-based stats. Identities = 20/162 (12%), Positives = 49/162 (30%), Gaps = 6/162 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC--PNGRKNSPEALKLHGITDE 68 FD ETTG+D DR ++ + +++ ++ + N L + Sbjct: 12 FDFETTGVDPAKDRPMQFAGIRTDLEFNPIGDPIMLYCKLAEDVLPNPDACLLTGITPQD 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + +E ++ + +N + F + ++ + + Sbjct: 72 ANREGLCEAEFMAEIEKELSQPGTCALGYN---TLRFDDEVVRYGFYRNFIDPYAREWQN 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 R + + GI + L LL+ Sbjct: 129 KCSRWDVIDLVRMTYAMRPDGIKWPKNDEGKVSLKLELLTKA 170 >gi|330447523|ref|ZP_08311171.1| exonuclease family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491714|dbj|GAA05668.1| exonuclease family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 185 Score = 38.4 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 56/156 (35%), Gaps = 5/156 (3%) Query: 8 RKIVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + FD+E G S+ IIEIG EL + K R Q ++ P + SP +L Sbjct: 5 RIVCFDLEMCCWNDGRTSRTGEIIEIGVAELDLNTGKIVRRAQHYVRPAKDEISPFCTEL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI E ++ S+ + + + A D L + K P Sbjct: 65 TGIKPEIVEKNGKPLSVILKSIEQKFGGRHKIYAAWGHDDRILKKECLAKDLKVPFREYL 124 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158 + TL +R + R + + G+ R Sbjct: 125 NLATLFKLQRHVTNKRLGQRAAMEIAGVEWEGRQHS 160 >gi|139473144|ref|YP_001127859.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes str. Manfredo] gi|134271390|emb|CAM29610.1| putative exonuclease [Streptococcus pyogenes str. Manfredo] Length = 208 Score = 38.4 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 10/51 (19%) Query: 4 KNKMR----KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFL 48 + M+ I FD+E ++ ND II++ AV+ + + +F ++ Sbjct: 11 EENMKHLDTYIAFDLE---FNTVNDVSHIIQVSAVKYDHHKEV-DSFDTYV 57 >gi|152986809|ref|YP_001349107.1| hypothetical protein PSPA7_3753 [Pseudomonas aeruginosa PA7] gi|150961967|gb|ABR83992.1| hypothetical protein PSPA7_3753 [Pseudomonas aeruginosa PA7] Length = 183 Score = 38.4 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 38/116 (32%), Gaps = 10/116 (8%) Query: 9 KIVFDIE-TT--GLDS-KNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRK-NSPEAL 60 +V D+E TT G + IIEIGA + FQ F+ P R + Sbjct: 4 WLVIDLEATTAEGGWPLEEMEIIEIGATLVAAADAREL--DHFQRFVRPLRRPLLTHFCR 61 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 L I+ + F +++ F + + + D E + Sbjct: 62 DLTHISQASVDGAAQFDAVWEAFERWLAQHRPRLAGWASWGDYDRRQLEQEWRQHR 117 >gi|50914940|ref|YP_060912.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS10394] gi|50904014|gb|AAT87729.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes MGAS10394] Length = 208 Score = 38.4 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 10/51 (19%) Query: 4 KNKMR----KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFL 48 + M+ I FD+E ++ ND II++ AV+ + + +F ++ Sbjct: 11 EENMKHLDTYIAFDLE---FNTVNDVSHIIQVSAVKYDHHKEV-DSFDTYV 57 >gi|15675683|ref|NP_269857.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes M1 GAS] gi|13622898|gb|AAK34578.1| putative DNA polymerase III epsilon subunit [Streptococcus pyogenes M1 GAS] Length = 208 Score = 38.4 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 10/51 (19%) Query: 4 KNKMR----KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFL 48 + M+ I FD+E ++ ND II++ AV+ + + +F ++ Sbjct: 11 EENMKHLDTYIAFDLE---FNTVNDVSHIIQVSAVKYDHHKEV-DSFDTYV 57 >gi|302672277|ref|YP_003832237.1| exonuclease family protein [Butyrivibrio proteoclasticus B316] gi|302396750|gb|ADL35655.1| exonuclease family protein [Butyrivibrio proteoclasticus B316] Length = 311 Score = 38.4 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 55/213 (25%), Gaps = 20/213 (9%) Query: 7 MR-KIVFDIETTGLDSKND------------RIIEIGAVELLDYSKTNRTFQVFLCPNGR 53 M+ I+FD+E ++ D I+EIGAV+L + + F + P Sbjct: 1 MKNYIIFDLE----WNQGDAPVVENGKTLNFEIVEIGAVKLNEKKEKIGEFSRLIRPQVF 56 Query: 54 KNSPEALKL--HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 K H ++ +P + + Sbjct: 57 KQMHRITGKLIHLTMEDLESGEPFTDVADEFLKWCGEDPQFCSWGPLDLTEFQRNLDFFG 116 Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + S H AL D+ + ++ Sbjct: 117 MPLLSDRPIAFYDVQKLYSIAFDDGKSRKALSTVVDEMQMDKDIPFHRALADAEYTARIF 176 Query: 172 IKM-MVGGSQINFGFKTNEDRFFKEEKKTVPNI 203 K+ +++F +E K T N Sbjct: 177 RKLGDKVLQRVSFDTYVTPKTRKQEIKITFDNY 209 >gi|283955763|ref|ZP_06373254.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336] gi|283792718|gb|EFC31496.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336] Length = 879 Score = 38.4 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 11/18 (61%), Positives = 14/18 (77%) Query: 10 IVFDIETTGLDSKNDRII 27 I FD ETTGLD+K +I+ Sbjct: 319 IAFDTETTGLDTKEAKIV 336 >gi|281421814|ref|ZP_06252813.1| exonuclease [Prevotella copri DSM 18205] gi|281404056|gb|EFB34736.1| exonuclease [Prevotella copri DSM 18205] Length = 140 Score = 38.4 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 3/142 (2%) Query: 34 LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE 93 ++ + ++ + P S ++HG+T E + F +++E Sbjct: 2 IVRDGEIADSYYSLIKPEPEYYSYWNTRVHGLTQEDTMNADVFPKVWAEIAPKIEG--LP 59 Query: 94 WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS 153 +AHNA FD G + A Q + D + R+ N Y Sbjct: 60 LVAHNAPFDEGCLKAVFQMYQMEYPDYEFHCTCRASRRKLGTLLPNHQLQTVAAY-CGYD 118 Query: 154 HRSKHGALLDSHLLSDVYIKMM 175 H AL D+ + + +++ Sbjct: 119 LTQHHNALADAEACAWIARELL 140 >gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] Length = 879 Score = 38.4 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 11/18 (61%), Positives = 14/18 (77%) Query: 10 IVFDIETTGLDSKNDRII 27 I FD ETTGLD+K +I+ Sbjct: 319 IAFDTETTGLDTKEAKIV 336 >gi|86151514|ref|ZP_01069729.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94] gi|157414635|ref|YP_001481891.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81116] gi|315123903|ref|YP_004065907.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841861|gb|EAQ59108.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94] gi|157385599|gb|ABV51914.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81116] gi|307747275|gb|ADN90545.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni M1] gi|315017625|gb|ADT65718.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315931584|gb|EFV10550.1| DNA-directed DNA polymerase [Campylobacter jejuni subsp. jejuni 327] Length = 879 Score = 38.4 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 11/18 (61%), Positives = 14/18 (77%) Query: 10 IVFDIETTGLDSKNDRII 27 I FD ETTGLD+K +I+ Sbjct: 319 IAFDTETTGLDTKEAKIV 336 >gi|297571046|ref|YP_003696820.1| exonuclease RNase T and DNA polymerase III [Arcanobacterium haemolyticum DSM 20595] gi|296931393|gb|ADH92201.1| Exonuclease RNase T and DNA polymerase III [Arcanobacterium haemolyticum DSM 20595] Length = 218 Score = 38.4 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%) Query: 10 IV-FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPN 51 IV D E TGLD + D ++EI V + + + P Sbjct: 12 IVWIDCEMTGLDLEKDALVEIAIVVTDAELNPLDNGLDIVIKPP 55 >gi|114623465|ref|XP_519596.2| PREDICTED: histone mRNA 3' end-specific exonuclease isoform 2 [Pan troglodytes] Length = 298 Score = 38.4 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 17/154 (11%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G + IIE V L ++ + TFQ ++ P S + L G Sbjct: 132 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTG 191 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT + + +F + + D+ ++G + + Sbjct: 192 ITQDQVDRADTFPQVLKKVIDWMKL-----------KELGTKYKYSLLTDGSWDMSKFLN 240 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158 ++R K+P ++ K YG H Sbjct: 241 IQCQLSRLKYPPFAKKWINIRKSYGNFYKGEHPH 274 >gi|25028926|ref|NP_738980.1| oligoribonuclease [Corynebacterium efficiens YS-314] gi|259507990|ref|ZP_05750890.1| oligoribonuclease [Corynebacterium efficiens YS-314] gi|29611789|sp|Q8FMX9|ORN_COREF RecName: Full=Oligoribonuclease gi|23494213|dbj|BAC19180.1| putative oligoribonuclease [Corynebacterium efficiens YS-314] gi|259164485|gb|EEW49039.1| oligoribonuclease [Corynebacterium efficiens YS-314] Length = 221 Score = 38.4 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 16/25 (64%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD + I+E+ A+ Sbjct: 20 RLVWVDLEMTGLDLERHVIVEVAAL 44 >gi|326802467|ref|YP_004320286.1| exonuclease RNase T and DNA polymerase III [Sphingobacterium sp. 21] gi|326553231|gb|ADZ81616.1| Exonuclease RNase T and DNA polymerase III [Sphingobacterium sp. 21] Length = 238 Score = 38.4 bits (87), Expect = 0.93, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 63/217 (29%), Gaps = 18/217 (8%) Query: 7 MRK--IVFDIETTGLDSK-------ND---RIIEIGAVEL-LDYSKTNRTFQVFLCPNGR 53 M++ + D ETTGL K D +++ + D + R ++ + Sbjct: 1 MQEYLLFIDTETTGLPKKWTVGYSTKDNWPSAVQVAWIVFTKDGREIKRE-NFYVNEDDV 59 Query: 54 KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINAE 109 S +A +H I D +L+ E Q + + +G Sbjct: 60 VVSRQAQLVHRIKDSYLRTFGVPRCAVMEKLSSDLRQFKPLVVGHFVALDFHVLGADFYR 119 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 N S K P + + + H ALLD+ + Sbjct: 120 CAMENPLGDLRLFCTMLASSGYVKKPWIKYLRLNELYQELFEKELEKAHNALLDADATAK 179 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206 Y +++ + + + K+ S+ Sbjct: 180 SYFELVKRKEVTEETIEEQQVKLSKQLILDKSPWSIS 216 >gi|319896797|ref|YP_004134991.1| oligoribonuclease [Haemophilus influenzae F3031] gi|317432300|emb|CBY80653.1| oligoribonuclease [Haemophilus influenzae F3031] Length = 182 Score = 38.4 bits (87), Expect = 0.93, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ + +RIIEI Sbjct: 11 IDLEMTGLEPEKERIIEIA 29 >gi|229780998|ref|YP_001103540.2| oligoribonuclease [Saccharopolyspora erythraea NRRL 2338] gi|291007403|ref|ZP_06565376.1| oligoribonuclease [Saccharopolyspora erythraea NRRL 2338] Length = 221 Score = 38.4 bits (87), Expect = 0.93, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 15/25 (60%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D E TGLD D +IEI A+ Sbjct: 4 RLVWIDCEMTGLDLGKDALIEIAAL 28 >gi|225575600|ref|ZP_03784210.1| hypothetical protein RUMHYD_03692 [Blautia hydrogenotrophica DSM 10507] gi|225037194|gb|EEG47440.1| hypothetical protein RUMHYD_03692 [Blautia hydrogenotrophica DSM 10507] Length = 319 Score = 38.4 bits (87), Expect = 0.93, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 18/62 (29%) Query: 7 MRKIVFDIETTGLDSKND-------------RIIEIGAVELLDYSKTNRTFQVFLCPNGR 53 M IV D+E IIEIGAV+L + F + P Sbjct: 1 MNYIVMDLE-----WNQCPDGKEYANEKLPFEIIEIGAVKLNQNKEIVGRFHEIIRPQVY 55 Query: 54 KN 55 K Sbjct: 56 KW 57 >gi|256789880|ref|ZP_05528311.1| hypothetical protein SlivT_35823 [Streptomyces lividans TK24] gi|289773763|ref|ZP_06533141.1| predicted protein [Streptomyces lividans TK24] gi|289703962|gb|EFD71391.1| predicted protein [Streptomyces lividans TK24] Length = 129 Score = 38.4 bits (87), Expect = 0.94, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 16/28 (57%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK 39 D+ET+GL + DR++ + V L + Sbjct: 35 VDVETSGLVPRRDRVLSVAVVTLDADGE 62 >gi|118496683|ref|YP_897733.1| oligoribonuclease [Francisella tularensis subsp. novicida U112] gi|194323992|ref|ZP_03057767.1| exonuclease family protein [Francisella tularensis subsp. novicida FTE] gi|208780043|ref|ZP_03247386.1| exonuclease family protein [Francisella novicida FTG] gi|166216259|sp|A0Q414|ORN_FRATN RecName: Full=Oligoribonuclease gi|118422589|gb|ABK88979.1| oligoribonuclease (3'->5' exoribonuclease) [Francisella novicida U112] gi|194321889|gb|EDX19372.1| exonuclease family protein [Francisella tularensis subsp. novicida FTE] gi|208744047|gb|EDZ90348.1| exonuclease family protein [Francisella novicida FTG] Length = 178 Score = 38.4 bits (87), Expect = 0.94, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +IIEI A+ Sbjct: 10 IDLEMTGLDVDSCKIIEIAAI 30 >gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221] gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221] gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3] Length = 879 Score = 38.4 bits (87), Expect = 0.94, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 50/184 (27%), Gaps = 20/184 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD ETTGLD+K +I+ F + N P G+ ++ Sbjct: 319 IAFDTETTGLDTKEAKIV---------------GFSFCMNENEAFYVPLTHNYLGVGEQI 363 Query: 70 -----LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 K + F + + + + + + K+P + Sbjct: 364 SLQSAKKAIEVIFNHFVIGHNLKYDFKIIQNNFDLNLPQKYADTMILAWLKNPSLRVNMD 423 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 D L + + ++ A D+++ Y+ + Sbjct: 424 DLALRLFNYETLHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNLETPLLE 483 Query: 185 FKTN 188 N Sbjct: 484 LAKN 487 >gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97] gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97] Length = 879 Score = 38.4 bits (87), Expect = 0.94, Method: Composition-based stats. Identities = 11/18 (61%), Positives = 14/18 (77%) Query: 10 IVFDIETTGLDSKNDRII 27 I FD ETTGLD+K +I+ Sbjct: 319 IAFDTETTGLDTKEAKIV 336 >gi|149927960|ref|ZP_01916210.1| oligoribonuclease [Limnobacter sp. MED105] gi|149823399|gb|EDM82632.1| oligoribonuclease [Limnobacter sp. MED105] Length = 191 Score = 38.4 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD ND++IE+ V Sbjct: 3 VDMEMTGLDPFNDKVIEVAVV 23 >gi|332244613|ref|XP_003271468.1| PREDICTED: 3'-5' exoribonuclease 1 [Nomascus leucogenys] Length = 349 Score = 38.4 bits (87), Expect = 0.96, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G + IIE V L ++ TFQ ++ P S + L G Sbjct: 132 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTG 191 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + + D+ + + + + + Sbjct: 192 ITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRLKYP 251 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G+ H L DS ++ + ++M+ Sbjct: 252 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMD-YDGRLHCGLDDSKNIARIAVRML 310 Query: 176 VGGSQINFG 184 G ++ Sbjct: 311 QDGCELRIN 319 >gi|281205101|gb|EFA79294.1| hypothetical protein PPL_07712 [Polysphondylium pallidum PN500] Length = 1364 Score = 38.4 bits (87), Expect = 0.96, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+E + D I EI A+++ T++ F + P ++ + Sbjct: 1119 FVALDLE-----AAGDAICEIAAIDM----TTSKCFTSMVNPG----PGAPFTYCPVSSQ 1165 Query: 69 FLKDKPSFSSI 79 + P + Sbjct: 1166 EVTQLPHHWNR 1176 >gi|90413340|ref|ZP_01221333.1| oligoribonuclease [Photobacterium profundum 3TCK] gi|90325582|gb|EAS42051.1| oligoribonuclease [Photobacterium profundum 3TCK] Length = 181 Score = 38.4 bits (87), Expect = 0.96, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +IIEI Sbjct: 11 VDLEMTGLDPEIHQIIEIA 29 >gi|152979290|ref|YP_001344919.1| exonuclease [Actinobacillus succinogenes 130Z] gi|150841013|gb|ABR74984.1| exonuclease [Actinobacillus succinogenes 130Z] Length = 59 Score = 38.4 bits (87), Expect = 0.96, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 4/55 (7%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ + D ET + + + IG + + + + +T+ + P Sbjct: 1 MKDFVALDFET--ANRERSSVCSIGLMFVENRQIS-KTYYQLIKPVPHFYRSFNT 52 >gi|67524821|ref|XP_660472.1| hypothetical protein AN2868.2 [Aspergillus nidulans FGSC A4] gi|40744263|gb|EAA63439.1| hypothetical protein AN2868.2 [Aspergillus nidulans FGSC A4] Length = 802 Score = 38.4 bits (87), Expect = 0.96, Method: Composition-based stats. Identities = 9/20 (45%), Positives = 11/20 (55%) Query: 12 FDIETTGLDSKNDRIIEIGA 31 D E TGLD D I++I Sbjct: 621 IDCEMTGLDPTTDHILQICC 640 >gi|91775826|ref|YP_545582.1| oligoribonuclease [Methylobacillus flagellatus KT] gi|91709813|gb|ABE49741.1| Exonuclease [Methylobacillus flagellatus KT] Length = 183 Score = 38.4 bits (87), Expect = 0.97, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 M+ ++ I D+E +GL +DRI+E+ AV Sbjct: 1 MMPQHNDNLIWLDMEMSGLQPDSDRILEVAAV 32 >gi|161612020|gb|AAI55978.1| hypothetical protein LOC548900 [Xenopus (Silurana) tropicalis] gi|161612114|gb|AAI55988.1| hypothetical protein LOC548900 [Xenopus (Silurana) tropicalis] Length = 345 Score = 38.4 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSK-NDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 V D E T G + IIE V L ++ + FQ ++ P S + L G Sbjct: 128 VIDFEATCEEGNSTDYTHEIIEFPIVLLNTHTLEIEDVFQRYVRPEINPQLSEFCVNLTG 187 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRINK 115 IT + + F + D+ E+ + + + + Sbjct: 188 ITQDIVDKSDIFPDVLRSVVDWMREKELGTKYKYAILTDGSWDMSKFLNMQCRVSRLKYP 247 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P ++ L ++ ++ G+T R G ++ + + M+ Sbjct: 248 RFAKKWINIRKSYGNFYKVPRTQTKLTTMLEKLGMTYDGRLHSGVDDSKNI-ARIAAHML 306 Query: 176 VGGSQINFG 184 G ++ Sbjct: 307 QDGCELRVN 315 >gi|324999723|ref|ZP_08120835.1| oligoribonuclease [Pseudonocardia sp. P1] Length = 213 Score = 38.4 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 16/30 (53%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDY 37 R + D E TGLD +D +IEI A+ Sbjct: 4 RLVWIDCEMTGLDLGSDALIEIAALVTDGD 33 >gi|298253384|ref|ZP_06977176.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis 5-1] gi|297532779|gb|EFH71665.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis 5-1] Length = 261 Score = 38.4 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 7/109 (6%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQV-FLCPNGRKNSPEAL---KLHGI 65 FD ETTG + D I+ + L + T + P+ N + Sbjct: 34 FDTETTGANIGKDAIVS-ATLVLRNPELAHTGDVVSTWLINPHQPMNPKASEVNGFTDEY 92 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 E + + +N +A+NA FD+ + +L+ + Sbjct: 93 LKEHGGEPEEELEFLARAVSMAQAKNIPLLAYNAPFDIAMLRHDLKHWH 141 >gi|238486688|ref|XP_002374582.1| RNA exonuclease Rex2, putative [Aspergillus flavus NRRL3357] gi|317144078|ref|XP_003189562.1| RNA exonuclease Rex2 [Aspergillus oryzae RIB40] gi|220699461|gb|EED55800.1| RNA exonuclease Rex2, putative [Aspergillus flavus NRRL3357] Length = 191 Score = 38.4 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 12 FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGIT 66 D E TGLDS+ D+II++ V + + F+ + + + Sbjct: 13 IDCEMTGLDSEKDQIIQVCCFVTDANLQLLDPHGFETVIHASKTTMDNMSQWCIDTH 69 >gi|315037938|ref|YP_004031506.1| DNA polymerase III alpha chain [Lactobacillus amylovorus GRL 1112] gi|312276071|gb|ADQ58711.1| DNA polymerase III alpha chain [Lactobacillus amylovorus GRL 1112] Length = 177 Score = 38.4 bits (87), Expect = 0.99, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 5/160 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET ++ + V + + +R F + P +++H IT Sbjct: 1 MNFIAMDFETANHYPESA--CSLALVMVRNTEIVDR-FYTVINPQ-MPFDARNIQVHQIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +K+ P+ + + AHNA+FD + L R N I Sbjct: 57 AEDVKNAPT-MAEVWPKIKGLYQPGMLVAAHNARFDTNVMRQSLARYNISEPHYLVIDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + R + + L+++ + + H + ++ Sbjct: 116 TTSKRFEPELPNHKLDTVSDALDVELWHHHNALSDSEACA 155 >gi|300856782|ref|YP_003781766.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii DSM 13528] gi|300436897|gb|ADK16664.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii DSM 13528] Length = 436 Score = 38.4 bits (87), Expect = 0.99, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 73/177 (41%), Gaps = 8/177 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET ++ + +G + + + + + P + + + ++GIT + Sbjct: 5 FVAIDFET--ANNNFNSACSLGIAAVKNNKICKKDY-FLIHPPTLDFNKKNISINGITPK 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID-TL 127 +++ P F I+++ +F++ IAHNA FD+ + L + + + I + Sbjct: 62 DIENSPLFPDIWNDIHTYFDD--NIIIAHNAVFDMSVLKNCLLEYDISMPNFNYICSIPI 119 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 S L K +G+ + H H +L D+ +++ I+ + + N Sbjct: 120 STKLCGGKGIGKSLEDRAKYFGVDLGH--HHNSLDDAAACANLVIECIKRAHKKNLE 174 >gi|167751276|ref|ZP_02423403.1| hypothetical protein EUBSIR_02262 [Eubacterium siraeum DSM 15702] gi|167655783|gb|EDR99912.1| hypothetical protein EUBSIR_02262 [Eubacterium siraeum DSM 15702] Length = 319 Score = 38.4 bits (87), Expect = 0.99, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 14/26 (53%) Query: 25 RIIEIGAVELLDYSKTNRTFQVFLCP 50 II+IGAV + D + F ++ P Sbjct: 12 EIIQIGAVAVTDGIVSEDFFSEYVRP 37 >gi|228993630|ref|ZP_04153537.1| Sporulation inhibitor KapD [Bacillus pseudomycoides DSM 12442] gi|228999668|ref|ZP_04159244.1| Sporulation inhibitor KapD [Bacillus mycoides Rock3-17] gi|229007227|ref|ZP_04164828.1| Sporulation inhibitor KapD [Bacillus mycoides Rock1-4] gi|228753981|gb|EEM03418.1| Sporulation inhibitor KapD [Bacillus mycoides Rock1-4] gi|228760030|gb|EEM09000.1| Sporulation inhibitor KapD [Bacillus mycoides Rock3-17] gi|228766059|gb|EEM14706.1| Sporulation inhibitor KapD [Bacillus pseudomycoides DSM 12442] Length = 207 Score = 38.4 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 54/182 (29%), Gaps = 16/182 (8%) Query: 9 KIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPE 58 + D E T G + IIE+G V ++D T+ ++ P + Sbjct: 6 FLFLDFEFTMPQNRKKPKGFFPE---IIEVGLVSVVD-CVVEDTYSSYVRPETFSCLTER 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 K GI E + SF + + + + + + P Sbjct: 62 CKKFLGINQEAVDGGISFLELVEKLVQYEKRCQTTIVTWGNMDMKVLKHNCEAIGAEFPF 121 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +L R ++ L + YG KH LD + + K++ Sbjct: 122 SGQCRDLSLEYKRFFGERNQTGLWKAIEAYGKV--GTGKHHCALDDAITTYNIFKLVEKD 179 Query: 179 SQ 180 + Sbjct: 180 KE 181 >gi|254491492|ref|ZP_05104671.1| Exonuclease C-terminal domain family [Methylophaga thiooxidans DMS010] gi|224462970|gb|EEF79240.1| Exonuclease C-terminal domain family [Methylophaga thiooxydans DMS010] Length = 479 Score = 38.4 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 61/208 (29%), Gaps = 7/208 (3%) Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGITDEF 69 D ET+G+D + DR ++ V D + ++ P+G + AL Sbjct: 8 DYETSGIDPRFDRPMQFAGVRTDEDLNIIGEPLMIYCKPSGDYLPHPQAALVTGLTPQLA 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 K+ + + + D + +N+ + F + + + + S Sbjct: 68 EKEGLNEAEFIKQIHDELAAPGTCGVGYNS---LRFDDEFTRFTLFRNFYDAYAREWQSG 124 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGA-LLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R L + GI +R L + I+ + + T Sbjct: 125 NSRWDIIDMVRLTRALRPEGIHWPNREDGKPSFRLEDLTAANGIEHSGAHDALADVYATI 184 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 E + + + +R + Sbjct: 185 EMARLIKNAQPKLYDYVFERRRKQTLAP 212 >gi|227495351|ref|ZP_03925667.1| exoribonuclease II [Actinomyces coleocanis DSM 15436] gi|226831221|gb|EEH63604.1| exoribonuclease II [Actinomyces coleocanis DSM 15436] Length = 207 Score = 38.4 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 1 MIRKNKMRKIV-FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCP 50 M R +V D E TGLD + D ++E+ V + + + + P Sbjct: 1 MTINYPARPLVWIDCEMTGLDVEKDALVEVAVVVTDEELNLLDPGIDLLIKP 52 >gi|313681469|ref|YP_004059207.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense DSM 16994] gi|313154329|gb|ADR33007.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense DSM 16994] Length = 247 Score = 38.4 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 69/215 (32%), Gaps = 7/215 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + I+ D ETTG +DRII++G + L + + + + Sbjct: 3 KYILLDTETTGAG-DDDRIIQLGYMVLDGKNV--EVYNEMCSTEVAISYGAMEVHGITPE 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT- 126 + + N + I HNA FD+G + E +D R Sbjct: 60 MIEGKPSCRETSAFQKLCELNTSDNVLIIHNAPFDLGMLTKENFSSQMRLIDTLRCARHL 119 Query: 127 ---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 R ++ R L + + ++ K + L+ +++ + Q + Sbjct: 120 FDEEESHRLQYFRYRLGLYKIEQDEAESLGIEVKAHDAIGDVLVLKLFLTELRKRLQERY 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 D+ + K V LK K +T+ Sbjct: 180 EGANPIDKMVELTKTPVFYTRALKFGKYKGKTLTE 214 >gi|262273022|ref|ZP_06050841.1| oligoribonuclease [Grimontia hollisae CIP 101886] gi|262222932|gb|EEY74238.1| oligoribonuclease [Grimontia hollisae CIP 101886] Length = 181 Score = 38.4 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + ++IEI Sbjct: 11 IDLEMTGLDPEVHKVIEIA 29 >gi|240170995|ref|ZP_04749654.1| oligoribonuclease [Mycobacterium kansasii ATCC 12478] Length = 215 Score = 38.4 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%) Query: 7 MR-KIV-FDIETTGLDSKNDRIIEIGAV 32 MR ++V D E TGL+ +D++IEI + Sbjct: 1 MRDELVWIDCEMTGLNIASDKLIEIAVL 28 >gi|147921738|ref|YP_684442.1| hypothetical protein LRC94 [uncultured methanogenic archaeon RC-I] gi|110619838|emb|CAJ35116.1| hypothetical protein LRC94 [uncultured methanogenic archaeon RC-I] Length = 191 Score = 38.4 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 15/126 (11%) Query: 11 VFDIETTGL------DSKNDRI-IEIGAVELLDYSKTNR------TFQVFLCPNGRKNSP 57 V D+E TGL + +D + IG + L + + +F + Sbjct: 6 VVDLEMTGLGKFDKANPVDDDYPVSIGII-LAGVDEEGKAIRCLDSFHTLIRIPNPSKVE 64 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKD 116 E H I E L+ P + + F+ + A N + D F++ + + Sbjct: 65 ETSIFHHIYPEDLEAAPKPKEVCGQIRKFYEKHGEIPAAAWNHRVDRHFVDILFKMGKME 124 Query: 117 PLDPSR 122 Sbjct: 125 SPIRKW 130 >gi|71911395|ref|YP_282945.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS5005] gi|71854177|gb|AAZ52200.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes MGAS5005] Length = 195 Score = 38.4 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%) Query: 9 KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFL 48 I FD+E ++ ND II++ AV+ + + +F ++ Sbjct: 7 YIAFDLE---FNTVNDVSHIIQVSAVKYDHHKEV-DSFDTYV 44 >gi|325276506|ref|ZP_08142262.1| exonuclease I [Pseudomonas sp. TJI-51] gi|324098353|gb|EGB96443.1| exonuclease I [Pseudomonas sp. TJI-51] Length = 105 Score = 38.4 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALK 61 D ETTG++ + DR +++ + D ++ + ++ P A Sbjct: 9 DYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPADDILPHPAAC 58 >gi|291222534|ref|XP_002731271.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii] Length = 954 Score = 38.4 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 12/127 (9%) Query: 10 IVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETT G+DS I +I A S + F ++ P + P A + G+T Sbjct: 497 VVFDLETTSFGIDSS---ICQIAA------SYDGKIFDEYVDP-CQPIHPAASNVTGLTY 546 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 K +F+ + + E EWI N+ RI + ++D L Sbjct: 547 TCGKLFHNFNLVPTLSQKDALESFIEWIPLNSVLVAHNCKNFDARILVSSVQRYGLLDKL 606 Query: 128 SIARRKH 134 Sbjct: 607 KHKHCCF 613 >gi|89071984|ref|ZP_01158580.1| hypothetical protein SKA34_08118 [Photobacterium sp. SKA34] gi|89052085|gb|EAR57536.1| hypothetical protein SKA34_08118 [Photobacterium sp. SKA34] Length = 186 Score = 38.4 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 56/156 (35%), Gaps = 5/156 (3%) Query: 8 RKIVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + FD+E G S+ IIEIG EL + K R Q ++ P + SP +L Sbjct: 5 RIVCFDLEMCCWNDGRTSRTGEIIEIGVAELDLNTGKIVRRAQHYVRPAKDEISPFCTEL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI E ++ S+ + + + A D L + K P Sbjct: 65 TGIKPEVVEKNGKPLSVILKSIEQKFGGRHKIYAAWGHDDRILKKECLAKELKVPFREYL 124 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158 + TL +R + R + + G+ R Sbjct: 125 NLATLFKLQRHVTNKRLGQRAAMEIAGVEWEGRQHS 160 >gi|54310437|ref|YP_131457.1| oligoribonuclease [Photobacterium profundum SS9] gi|59798036|sp|Q6LM23|ORN_PHOPR RecName: Full=Oligoribonuclease gi|46914878|emb|CAG21655.1| putative oligoribonuclease [Photobacterium profundum SS9] Length = 181 Score = 38.0 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +IIEI Sbjct: 11 VDLEMTGLDPEIHQIIEIA 29 >gi|324509601|gb|ADY44034.1| Oligoribonuclease [Ascaris suum] Length = 198 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 14/25 (56%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R I D E TGLD + ++EI + Sbjct: 24 RLIWIDCEMTGLDVRQHTLVEIACI 48 >gi|300781383|ref|ZP_07091237.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC 33030] gi|300533090|gb|EFK54151.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC 33030] Length = 233 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 9/29 (31%), Positives = 15/29 (51%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLD 36 R + FD+ETT + + RI+ V + Sbjct: 16 RMLSFDLETTSANPREARIVTSALVRIDG 44 >gi|21228069|ref|NP_633991.1| hypothetical protein MM_1967 [Methanosarcina mazei Go1] gi|20906505|gb|AAM31663.1| hypothetical protein MM_1967 [Methanosarcina mazei Go1] Length = 249 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 7/39 (17%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 FDIETTGL D+I V + + ++ ++ Sbjct: 89 FFDIETTGLSPCRDKIT---VVGIYNGNEVK----TYVR 120 >gi|307110015|gb|EFN58252.1| hypothetical protein CHLNCDRAFT_12089 [Chlorella variabilis] Length = 171 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 9/21 (42%), Positives = 16/21 (76%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD ++D+I++I + Sbjct: 11 IDLEMTGLDVESDQILQIAVI 31 >gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A] gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A] Length = 955 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 14/22 (63%) Query: 10 IVFDIETTGLDSKNDRIIEIGA 31 I +D ETTGL+ + +++ I Sbjct: 367 IAWDTETTGLNPQTAKLVGISC 388 >gi|254489693|ref|ZP_05102889.1| exonuclease superfamily [Methylophaga thiooxidans DMS010] gi|224465102|gb|EEF81355.1| exonuclease superfamily [Methylophaga thiooxydans DMS010] Length = 185 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 15/29 (51%), Positives = 19/29 (65%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + K+K I D+E TGLD+ ND IIEI Sbjct: 1 MAKSKNNLIWIDLEMTGLDTNNDYIIEIA 29 >gi|33357113|pdb|1J9A|A Chain A, Oligoribonuclease Length = 184 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +RIIEI Sbjct: 13 IDLEXTGLDPEKERIIEIA 31 >gi|114564478|ref|YP_751992.1| oligoribonuclease [Shewanella frigidimarina NCIMB 400] gi|122298754|sp|Q07XW1|ORN_SHEFN RecName: Full=Oligoribonuclease gi|114335771|gb|ABI73153.1| Exonuclease, RNase T and DNA polymerase III [Shewanella frigidimarina NCIMB 400] Length = 181 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ DR+IEI Sbjct: 11 VDLEMTGLEPDVDRVIEIA 29 >gi|94990039|ref|YP_598139.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS10270] gi|94543547|gb|ABF33595.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes MGAS10270] Length = 833 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 32/196 (16%) Query: 1 MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48 M +K + V D+E TG ++II +++ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 60 Query: 49 CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 P+ + L GITD+ L P F + + + ++AHN KFD + Sbjct: 61 NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 116 Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 + +DT+ +A+ P S R + I H A+ D+ + Sbjct: 117 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLSHLSRQ-LNIDLAEAHTAIADARATA 174 Query: 169 DVYIKMMVGGSQINFG 184 ++++++ + Sbjct: 175 ILFLRLLQKIESLPIE 190 >gi|50913902|ref|YP_059874.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS10394] gi|139474153|ref|YP_001128869.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes str. Manfredo] gi|50902976|gb|AAT86691.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes MGAS10394] gi|134272400|emb|CAM30656.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes str. Manfredo] Length = 833 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 32/196 (16%) Query: 1 MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48 M +K + V D+E TG ++II +++ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 60 Query: 49 CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 P+ + L GITD+ L P F + + + ++AHN KFD + Sbjct: 61 NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 116 Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 + +DT+ +A+ P S R + I H A+ D+ + Sbjct: 117 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLSHLSRQ-LNIDLAEAHTAIADARATA 174 Query: 169 DVYIKMMVGGSQINFG 184 ++++++ + Sbjct: 175 ILFLRLLQKIESLPIE 190 >gi|71910349|ref|YP_281899.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS5005] gi|71853131|gb|AAZ51154.1| ATP-dependent helicase [Streptococcus pyogenes MGAS5005] Length = 819 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 32/196 (16%) Query: 1 MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48 M +K + V D+E TG ++II +++ + Sbjct: 1 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 46 Query: 49 CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 P+ + L GITD+ L P F + + + ++AHN KFD + Sbjct: 47 NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 102 Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 + +DT+ +A+ P S R + I H A+ D+ + Sbjct: 103 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLSHLSRQ-LNIDLAEAHTAIADARATA 160 Query: 169 DVYIKMMVGGSQINFG 184 ++++++ + Sbjct: 161 ILFLRLLQKIESLPIE 176 >gi|71903180|ref|YP_279983.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS6180] gi|71802275|gb|AAX71628.1| ATP-dependent helicase [Streptococcus pyogenes MGAS6180] Length = 833 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 32/196 (16%) Query: 1 MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48 M +K + V D+E TG ++II +++ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 60 Query: 49 CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 P+ + L GITD+ L P F + + + ++AHN KFD + Sbjct: 61 NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 116 Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 + +DT+ +A+ P S R + I H A+ D+ + Sbjct: 117 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLSHLSRQ-LNIDLAEAHTAIADARATA 174 Query: 169 DVYIKMMVGGSQINFG 184 ++++++ + Sbjct: 175 ILFLRLLQKIESLPIE 190 >gi|15674717|ref|NP_268891.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes M1 GAS] gi|13621839|gb|AAK33612.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes M1 GAS] Length = 833 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 32/196 (16%) Query: 1 MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48 M +K + V D+E TG ++II +++ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 60 Query: 49 CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 P+ + L GITD+ L P F + + + ++AHN KFD + Sbjct: 61 NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 116 Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 + +DT+ +A+ P S R + I H A+ D+ + Sbjct: 117 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLSHLSRQ-LNIDLAEAHTAIADARATA 174 Query: 169 DVYIKMMVGGSQINFG 184 ++++++ + Sbjct: 175 ILFLRLLQKIESLPIE 190 >gi|21909995|ref|NP_664263.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS315] gi|28896308|ref|NP_802658.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes SSI-1] gi|21904184|gb|AAM79066.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes MGAS315] gi|28811559|dbj|BAC64491.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes SSI-1] Length = 833 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 32/196 (16%) Query: 1 MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48 M +K + V D+E TG ++II +++ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 60 Query: 49 CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 P+ + L GITD+ L P F + + + ++AHN KFD + Sbjct: 61 NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 116 Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 + +DT+ +A+ P S R + I H A+ D+ + Sbjct: 117 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLSHLSRQ-LNIDLAEAHTAIADARATA 174 Query: 169 DVYIKMMVGGSQINFG 184 ++++++ + Sbjct: 175 ILFLRLLQKIESLPIE 190 >gi|325087498|gb|EGC40808.1| oligoribonuclease [Ajellomyces capsulatus H88] Length = 189 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 13/20 (65%) Query: 12 FDIETTGLDSKNDRIIEIGA 31 D E TGL+ + D+I++I Sbjct: 13 IDCEMTGLNPRTDKILQICC 32 >gi|152965734|ref|YP_001361518.1| exonuclease RNase T and DNA polymerase III [Kineococcus radiotolerans SRS30216] gi|151360251|gb|ABS03254.1| Exonuclease RNase T and DNA polymerase III [Kineococcus radiotolerans SRS30216] Length = 218 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 2/62 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD ETTGL + EI V T R + FL + P AL + Sbjct: 7 VFFDTETTGLGP-GRQAWEIALVRREPDG-TERPLEFFLPIEEVRAEPGALDIGRYYARH 64 Query: 70 LK 71 Sbjct: 65 PH 66 >gi|325956410|ref|YP_004291822.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC] gi|325332975|gb|ADZ06883.1| DNA polymerase III alpha chain [Lactobacillus acidophilus 30SC] gi|327183226|gb|AEA31673.1| DNA polymerase III subunit alpha [Lactobacillus amylovorus GRL 1118] Length = 177 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 5/160 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET ++ + V + + +R F + P +++H IT Sbjct: 1 MNFIAMDFETANHYPESA--CSLALVMVRNTEIVDR-FYTVINPQ-MPFDARNIQVHQIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +K+ P+ + + AHNA+FD + L R N I Sbjct: 57 AEDVKNAPT-MAEVWPKIKGLYQPGMLVAAHNARFDTNVMRQSLARYNISEPHYLVIDTL 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + + + + L+++ + + H + ++ Sbjct: 116 ATSKKFEPELPNHKLDTVSDALDVELWHHHNALSDSEACA 155 >gi|262038648|ref|ZP_06012015.1| exonuclease RNase T and DNA polymerase III [Leptotrichia goodfellowii F0264] gi|261747318|gb|EEY34790.1| exonuclease RNase T and DNA polymerase III [Leptotrichia goodfellowii F0264] Length = 195 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 69/185 (37%), Gaps = 19/185 (10%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK------TNRTFQVFLCPNGRKN 55 ++KN I FD+ET G ++ I A+++ + + + + G Sbjct: 1 MKKN---IIFFDVETNG--KMGSSVLSISAIKVSYDFEKNSWEKVSEYDRFYFRNEGEPI 55 Query: 56 SPEALKLHGITD------EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 + A+ ++G+TD D PS + + + + ++AHN KFD FI Sbjct: 56 NFGAINVNGLTDEVIAEKRENADYPSTFKEDLDSFYLYCQDTKHFVAHNIKFDRSFIPFP 115 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 L+ ++ I+ L K Y + + H +L D + Sbjct: 116 LKNQFDTMMENIDIVRAGINEYGS--YKWPKLMECAKFYNVPMDEEQLHESLYDVLITFR 173 Query: 170 VYIKM 174 V+ KM Sbjct: 174 VFYKM 178 >gi|239814490|ref|YP_002943400.1| oligoribonuclease [Variovorax paradoxus S110] gi|239801067|gb|ACS18134.1| Exonuclease RNase T and DNA polymerase III [Variovorax paradoxus S110] Length = 198 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +++K+ + D E +GLD + +R++EI V Sbjct: 15 VLKKSDQNLVWLDCEMSGLDPEKERLLEIAVV 46 >gi|198283559|ref|YP_002219880.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666066|ref|YP_002426185.1| exodeoxyribonuclease X, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248080|gb|ACH83673.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518279|gb|ACK78865.1| exodeoxyribonuclease X, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 220 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYS--KTNRTFQVFLCP 50 MR ++FD ETTG +IE + + D + F P Sbjct: 1 MRALIFDTETTG--RVEPELIEAAWLAVSDLRTLEVEEQFVQRYRP 44 >gi|160893421|ref|ZP_02074206.1| hypothetical protein CLOL250_00970 [Clostridium sp. L2-50] gi|156864816|gb|EDO58247.1| hypothetical protein CLOL250_00970 [Clostridium sp. L2-50] Length = 319 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 63/233 (27%), Gaps = 25/233 (10%) Query: 7 MRKIVFDIETTGL---DSKND---------RIIEIGAVELLDYSKTNRTFQVFLCP---- 50 M IV D+E IIEIGAV++ + + + P Sbjct: 1 MNYIVMDLE----WNQSYSGHIGEHPRMPFEIIEIGAVKVDKNYRIIDEYSSLIKPRIYK 56 Query: 51 --NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 + + + + + + D+ + ++ F Sbjct: 57 KLHSKIRTILNYDETDLAKGRGFKEVCTEFLEWCGKDYIFCTWGPMDLTELQTNMAFYYM 116 Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 + L+ +I + S + H + + A + +L Sbjct: 117 DKLPRPLKFLNLQQIYANMVDPTGSTVSKLEKAVADFNIPEDEPFHSAVNDARYTALVLK 176 Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPN-ISLLKRDKPLFTRITKEE 220 +++ + + +F + + +E N + R+ +E Sbjct: 177 EMHPRNLKDL--YSFDLYIHPTKKEEEIVAIHNNQYEYITREFSSKQEAMDDE 227 >gi|159489154|ref|XP_001702562.1| predicted protein [Chlamydomonas reinhardtii] gi|158280584|gb|EDP06341.1| predicted protein [Chlamydomonas reinhardtii] Length = 180 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + D IIE+ + Sbjct: 4 VDLEMTGLDIEKDTIIEMACI 24 >gi|119491524|ref|XP_001263283.1| RNA exonuclease Rex2, putative [Neosartorya fischeri NRRL 181] gi|119411443|gb|EAW21386.1| RNA exonuclease Rex2, putative [Neosartorya fischeri NRRL 181] Length = 188 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 2/57 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGL+ + D I++I F+ + + + Sbjct: 13 IDCEMTGLNPETDTILQICCYITDANLNLLDPEGFETIIRHDRSVLDSMSPWCVDTH 69 >gi|153003099|ref|YP_001377424.1| hypothetical protein Anae109_0222 [Anaeromyxobacter sp. Fw109-5] gi|152026672|gb|ABS24440.1| conserved hypothetical protein [Anaeromyxobacter sp. Fw109-5] Length = 172 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 46/172 (26%), Gaps = 5/172 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLHG 64 M V D+E G ++ +GAV + RTF P + A+ Sbjct: 1 MSLYVVDVEADGPIPGKYSMVSLGAVLVEPG--LGRTFYGRTRPIADAFLPDALAVSATT 58 Query: 65 ITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + D+P + F + + + N FD F+N Sbjct: 59 REEHLRFDEPGEVMAAFERWIQETTRGKPVFFSDNLAFDWQFVNWYFHTYLGRNPFGWSG 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + L K G + D+ +K+ Sbjct: 119 RRIGDLYCGMVKDAYAQWKHLRKTGHDHHPVNDAKGNAEALLAMIDMGLKLT 170 >gi|90578520|ref|ZP_01234331.1| hypothetical protein VAS14_15754 [Vibrio angustum S14] gi|90441606|gb|EAS66786.1| hypothetical protein VAS14_15754 [Vibrio angustum S14] Length = 186 Score = 38.0 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 56/156 (35%), Gaps = 5/156 (3%) Query: 8 RKIVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + FD+E G S+ IIEIG EL + K R Q ++ P + SP +L Sbjct: 5 RIVCFDLEMCCWNDGRTSRTGEIIEIGVAELDLNTGKIVRRAQHYVRPAKDEISPFCTEL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI E ++ S+ + + + A D L + K P Sbjct: 65 TGIKPEVVEKNGKPLSVILKSIEQKFGGRHKIYAAWGHDDRILKKECLAKELKVPFREYL 124 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158 + TL +R + R + + G+ R Sbjct: 125 NLATLFKLQRHVTNKRLGQRAAMEIAGVEWEGRQHS 160 >gi|330883457|gb|EGH17606.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. glycinea str. race 4] Length = 54 Score = 38.0 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%) Query: 205 LLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRYISS 243 R R ++ EL EH+ + T+ K A+W + + + Sbjct: 6 PADRKPCRIIRASESELAEHEVRMSTIAKASGAPALWVQMLEA 48 >gi|147900544|ref|NP_001089554.1| exoribonuclease 1 [Xenopus laevis] gi|67678439|gb|AAH97876.1| Thex1 protein [Xenopus laevis] Length = 348 Score = 38.0 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 65/190 (34%), Gaps = 18/190 (9%) Query: 11 VFDIETT-----GLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLH 63 V D E T LD IIE V L ++ + FQ ++ P S + L Sbjct: 131 VIDFEATCEAGNSLDYP-HEIIEFPIVLLNTHTLEIEDVFQCYVRPEINPQLSEFCVNLT 189 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQ---------NAEWIAHNAKFDVGFINAELQRIN 114 GIT + + +F ++ ++ E+ + + + + Sbjct: 190 GITQDTVDKSDTFPNVLRSVVEWMREKELGSKYKYAILTDGSWDMSKFLNMQCRISRLKY 249 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I K P ++ L ++ ++ G+T + H L DS ++ + M Sbjct: 250 PRFAKKWINIRKSYGNFYKVPRTQTKLTTMLEKLGMT-YNGRLHSGLDDSKNIARIAAHM 308 Query: 175 MVGGSQINFG 184 + G ++ Sbjct: 309 LQDGCELRVN 318 >gi|84494356|ref|ZP_00993475.1| oligoribonuclease [Janibacter sp. HTCC2649] gi|84383849|gb|EAP99729.1| oligoribonuclease [Janibacter sp. HTCC2649] Length = 226 Score = 38.0 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCP 50 R + D E TGL +ND ++E+ A V + + V + P Sbjct: 15 RIVWIDCEMTGLSLENDALVEVAALVTDFELNILGDGVDVVIKP 58 >gi|317495208|ref|ZP_07953578.1| exonuclease [Gemella moribillum M424] gi|316914630|gb|EFV36106.1| exonuclease [Gemella moribillum M424] Length = 623 Score = 38.0 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 8/172 (4%) Query: 1 MIRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M+R+ K + + DIE T + II+ A ++ + + ++ P + Sbjct: 1 MVRELKGKYFCIVDIELT----EEKEIIQFAAKKIDFNFRVINSINYYIKPIQSDITSFV 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L GIT+E L+DKPSF + +++ + + + I + + Sbjct: 57 TDLTGITNEILRDKPSFRKVSKVLYEYIKDG---ILVCHGLQSDYLILKKHFQDIGIEYS 113 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 PS +DT+ +AR P+ + S S + H A++D + + Sbjct: 114 PSMSLDTVELARLFLPTQSSYRLSDLAASLNIYSSDNYHNAVIDVKATAKLL 165 >gi|238758483|ref|ZP_04619660.1| Exodeoxyribonuclease 10 [Yersinia aldovae ATCC 35236] gi|238703387|gb|EEP95927.1| Exodeoxyribonuclease 10 [Yersinia aldovae ATCC 35236] Length = 187 Score = 38.0 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 71/188 (37%), Gaps = 20/188 (10%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D ET GL I+E+ +++++D N + P+ R S +A+ +H IT Sbjct: 1 MYFRVIDTETCGL---EGGIVEVASIDVVDGVL-NNPMSDLISPD-RPISIDAMVIHHIT 55 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E ++ KP + ++ + ++AHNA FD G + + I T Sbjct: 56 EEMVEGKPRIAVAVRKYQ-----GSPYYVAHNAPFDRGVLPE----------MGGQWICT 100 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +AR +P ++ L + +S + + + + Sbjct: 101 LKLARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIMKDSGWNAQ 160 Query: 187 TNEDRFFK 194 + + Sbjct: 161 QMAEMTQQ 168 >gi|16331359|ref|NP_442087.1| ribonuclease D [Synechocystis sp. PCC 6803] gi|1001530|dbj|BAA10157.1| ribonuclease D [Synechocystis sp. PCC 6803] Length = 217 Score = 38.0 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 2/24 (8%) Query: 8 RKIVFDIETTGLDSKNDR--IIEI 29 +++ D ET GL+ DR +++I Sbjct: 29 KEVAVDTETMGLNPHRDRLCLVQI 52 >gi|330720662|gb|EGG98910.1| 3'-to-5' oligoribonuclease (orn) [gamma proteobacterium IMCC2047] Length = 182 Score = 38.0 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ +D IIEI Sbjct: 10 VDLEMTGLEPDHDTIIEIA 28 >gi|262201950|ref|YP_003273158.1| exonuclease RNase T and DNA polymerase III [Gordonia bronchialis DSM 43247] gi|262085297|gb|ACY21265.1| Exonuclease RNase T and DNA polymerase III [Gordonia bronchialis DSM 43247] Length = 194 Score = 38.0 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 15/26 (57%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37 D E TGL ++D++IEI A+ Sbjct: 3 IDCEMTGLSLESDKLIEIAALVTDGD 28 >gi|312883579|ref|ZP_07743304.1| hypothetical protein VIBC2010_12209 [Vibrio caribbenthicus ATCC BAA-2122] gi|309368802|gb|EFP96329.1| hypothetical protein VIBC2010_12209 [Vibrio caribbenthicus ATCC BAA-2122] Length = 176 Score = 38.0 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 20/183 (10%) Query: 5 NKMRKIVFDIET----------TGLDSKNDRIIEIGAVELL--DYSKTNRTFQVFLCPNG 52 N R + FD+E TG IIEIG E+ R Q ++ P Sbjct: 2 NHNRVVCFDLEMCCWNENGIGRTG------EIIEIGLAEIDLTSGEIVKRA-QYYVKPEA 54 Query: 53 RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + S +L GI+ ++ + + + A D + E + Sbjct: 55 DEVSQFCTELTGISPRKIEKQGRSLGEVLNSMKKNFGGSNKIYAS-WGRDDVILQNECAK 113 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + I + + + + + +H +D++ L+ + + Sbjct: 114 KGLEMPFREFINLATLFRIQNRLKDKRVGHKVAQEMKGITWEGRQHSGYVDAYNLAKLAL 173 Query: 173 KMM 175 M+ Sbjct: 174 VML 176 >gi|145595801|ref|YP_001160098.1| hypothetical protein Strop_3286 [Salinispora tropica CNB-440] gi|145305138|gb|ABP55720.1| DNA polymerase III, epsilon subunit [Salinispora tropica CNB-440] Length = 607 Score = 38.0 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 61/169 (36%), Gaps = 3/169 (1%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG I EIGAV++ + + P G P L GIT Sbjct: 54 FVVVDLETTGGTPDGGGITEIGAVKVRGGEQLG-VLATLVNP-GTPVPPFVTVLTGITQS 111 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + + F +F +A +AHNA +DVGF+ A P + Sbjct: 112 MLLPAPPITEVLPSFLEFL-PPDAVLVAHNAPYDVGFLKAACAAHGYRWPSPRVLDTAAL 170 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R + + R H AL D+ DV ++ Sbjct: 171 ARRVLTRDEVPNRRLGTLAAYFRTATRPTHRALDDALATVDVLHGLISR 219 >gi|18957986|gb|AAL79620.1| DNA polymerase III, epsilon chain-like protein [Xenorhabdus nematophila] Length = 45 Score = 38.0 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 3/31 (9%) Query: 211 PLFTRITKEELDEHDKTIQTLGKN---AIWD 238 + EEL +H+ + + K +W Sbjct: 8 LKVIYASDEELTQHESRLDLVEKKGGSCLWR 38 >gi|311896098|dbj|BAJ28506.1| putative oligoribonuclease [Kitasatospora setae KM-6054] Length = 200 Score = 38.0 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPN 51 R + D E TGLD D +IE+ A V + + V + P Sbjct: 4 RLVWIDCEMTGLDLDRDALIEVAALVTDSELNVLGEGVDVIIRPP 48 >gi|227872469|ref|ZP_03990809.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227841670|gb|EEJ51960.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 388 Score = 38.0 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 15/25 (60%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL 35 FDIETTGL K+ +I IG + Sbjct: 28 FFDIETTGLSPKSAQIYSIGLLLFK 52 >gi|83757883|gb|ABC45996.1| exonuclease family [Salinibacter ruber DSM 13855] Length = 538 Score = 38.0 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 4/97 (4%) Query: 28 EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87 EIGAV++ D S +R FQ + P + K+ GIT + + P + ++ F Sbjct: 2 EIGAVKVRDGSVVDR-FQQLVNPQ-QSVPGRITKMTGITTGMVFEAPPADEVLPDYRAFL 59 Query: 88 NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + +AHN FD F++AELQR+ + L + Sbjct: 60 GD--GILVAHNVSFDGSFLDAELQRMGDETLPNETLC 94 >gi|296270642|ref|YP_003653274.1| exonuclease RNase T and DNA polymerase III [Thermobispora bispora DSM 43833] gi|296093429|gb|ADG89381.1| Exonuclease RNase T and DNA polymerase III [Thermobispora bispora DSM 43833] Length = 198 Score = 38.0 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGR 53 D E TGLD D ++E+ + + + V + P Sbjct: 8 IDCEMTGLDLTRDALVEVACIVTDGELNPVDEGVAVVIKPPPE 50 >gi|194015681|ref|ZP_03054297.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bacillus pumilus ATCC 7061] gi|194013085|gb|EDW22651.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bacillus pumilus ATCC 7061] Length = 744 Score = 38.0 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 16/19 (84%) Query: 9 KIVFDIETTGLDSKNDRII 27 +IVFD+ETTG+D ND I+ Sbjct: 136 EIVFDVETTGVDVWNDYIV 154 >gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ] gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ] Length = 888 Score = 38.0 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 9/21 (42%), Positives = 12/21 (57%) Query: 11 VFDIETTGLDSKNDRIIEIGA 31 FD ETTGLD + ++ I Sbjct: 314 AFDTETTGLDPRTAELVGISI 334 >gi|94311778|ref|YP_584988.1| exonuclease [Cupriavidus metallidurans CH34] gi|93355630|gb|ABF09719.1| 3'-5' Exonuclease [Cupriavidus metallidurans CH34] Length = 194 Score = 38.0 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 11/101 (10%) Query: 11 VFDIETT-------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKL 62 V D+E T G + + EIGAV + FQ F+ P + L Sbjct: 7 VVDLEATCSEDMAAGWEMETA---EIGAVWVRGNGTVLDHFQSFVRPVVNPQLTAFFTNL 63 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103 GI+ + D P F+ + F + Sbjct: 64 TGISQSDVDDAPLFTVAAEQLRQFVERYQMPGSIWVSWGAW 104 >gi|313836680|gb|EFS74394.1| exonuclease [Propionibacterium acnes HL037PA2] gi|314929914|gb|EFS93745.1| exonuclease [Propionibacterium acnes HL044PA1] gi|314972342|gb|EFT16439.1| exonuclease [Propionibacterium acnes HL037PA3] Length = 202 Score = 38.0 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD +D +IE+ A+ V + P + + + Sbjct: 5 IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLEHMNDFVRDMH 60 >gi|259486196|tpe|CBF83844.1| TPA: RNA exonuclease Rex2, putative (AFU_orthologue; AFUA_3G11820) [Aspergillus nidulans FGSC A4] Length = 194 Score = 38.0 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 9/20 (45%), Positives = 11/20 (55%) Query: 12 FDIETTGLDSKNDRIIEIGA 31 D E TGLD D I++I Sbjct: 13 IDCEMTGLDPTTDHILQICC 32 >gi|291521153|emb|CBK79446.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Coprococcus catus GD/7] Length = 320 Score = 38.0 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 61/216 (28%), Gaps = 20/216 (9%) Query: 7 MRKIVFDIETTGLDSKND-------------RIIEIGAVELLDYSKTNRTFQVFLCPN-G 52 M +V D E IIEIGAV+L + K F + P Sbjct: 1 MNYVVVDFE-----WNQACYGKGSENRKIPFEIIEIGAVKLDENLKEIDRFSRTIRPKVY 55 Query: 53 RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQ 111 +K L GIT E L FS + +F + + N Sbjct: 56 KKLHYITRDLTGITQEELCASDPFSYVLVDFMLWCGKDYIFCTWGNMDLVELQRNMKYYG 115 Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ++ + Y H A+ D+ +DV+ Sbjct: 116 LLDLLKGPVKYYNVQKFFRLLCAHDASAVSLESAVDYFQLPKEAGFHRAVNDAAYTADVF 175 Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207 ++ ++ + ++ K ++ + S K Sbjct: 176 RRIDQEEAKKLYSIDYYQNPQSKGDEIHLRYDSYYK 211 >gi|319787286|ref|YP_004146761.1| exodeoxyribonuclease I [Pseudoxanthomonas suwonensis 11-1] gi|317465798|gb|ADV27530.1| Exodeoxyribonuclease I [Pseudoxanthomonas suwonensis 11-1] Length = 480 Score = 38.0 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56 + +D+ET G D + RI + AV + + +F+ P Sbjct: 5 FLFYDLETFGADPRRSRIAQFAAVRTDRELQVVDEPISLFVRPADDLLP 53 >gi|254455766|ref|ZP_05069195.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. HTCC7211] gi|207082768|gb|EDZ60194.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. HTCC7211] Length = 481 Score = 38.0 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGI 65 M+ +V+DIET + IIEIG + L + K F P R S AL ++ Sbjct: 1 MKYVVWDIETDSAQTDWATIIEIGGILLDENFKELERFSARCRMPQDRVPSATALCINKS 60 Query: 66 T 66 Sbjct: 61 N 61 >gi|159906145|ref|YP_001549807.1| exonuclease RNase T and DNA polymerase III [Methanococcus maripaludis C6] gi|159887638|gb|ABX02575.1| Exonuclease RNase T and DNA polymerase III [Methanococcus maripaludis C6] Length = 191 Score = 38.0 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 3/125 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL I ++ + K + F + + S + + Sbjct: 2 YVFLDTETTGLHPGQ--IAQLSYLVTDKNLKLKKVFNQYYSVDRMSRSAAKVHGLTMDIL 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +++ I HN FD+ F+ AE +R+ + + + Sbjct: 60 DELSNGMTFEDTVDEVRD-DLEDSVIIGHNISFDIRFLKAEFERLGPEYIPKDKFCTMFH 118 Query: 129 IARRK 133 Sbjct: 119 FTPIC 123 >gi|317124466|ref|YP_004098578.1| exonuclease RNase T and DNA polymerase III [Intrasporangium calvum DSM 43043] gi|315588554|gb|ADU47851.1| Exonuclease RNase T and DNA polymerase III [Intrasporangium calvum DSM 43043] Length = 211 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--NRTFQVFLCPNGRKNSPEALKLHGI 65 R I D E TGL + D ++E+ A+ + D+ T V + P + + Sbjct: 16 RIIWIDCEMTGLSLRTDALVEVAAL-VTDFELTVLGEGVDVVIRPPAAALDQMDEFVRDM 74 Query: 66 T 66 Sbjct: 75 H 75 >gi|224368019|ref|YP_002602182.1| hypothetical protein HRM2_09050 [Desulfobacterium autotrophicum HRM2] gi|223690735|gb|ACN14018.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 277 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 12/88 (13%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ M + DIETTGL+ + I I L D T + ++ PE + + Sbjct: 83 RHSM--VYLDIETTGLEPSYESITTIA---LYDGI----TIRYYVKGENLDRFPEEISQY 133 Query: 64 G---ITDEFLKDKPSFSSIFSEFWDFFN 88 + D P F D + Sbjct: 134 KAIVTYNGKCFDVPFIEHEFGIRLDQVH 161 >gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559] gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559] Length = 956 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 8/21 (38%), Positives = 12/21 (57%) Query: 10 IVFDIETTGLDSKNDRIIEIG 30 + FD ETTGL+ ++ I Sbjct: 386 VCFDTETTGLNPLTAELVGIA 406 >gi|311697102|gb|ADP99974.1| YacC protein [marine bacterium HP15] Length = 286 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 60/185 (32%), Gaps = 13/185 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D ETTGLD +IIE+ + + L P PEA +HG+T EFL Sbjct: 110 FLDTETTGLD-DQAQIIELAISDAQGTIL----LETKLRP-SVSIDPEAEDVHGLTIEFL 163 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SRIIDTL 127 + P++ + + + NA FD + Sbjct: 164 ANAPTWPEVSDQVRKILCG--RALVIFNADFDTRMFRQTAAAYGEPVEWVSELKTHCAMY 221 Query: 128 SIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 A P++R+ SL + HGA+ D+ D+ + + Sbjct: 222 LAADAFGPTNRHGSISLADAVDFAGVTWRGAAHGAVADTLATVDLVQAIGSIRRDLETEL 281 Query: 186 KTNED 190 E+ Sbjct: 282 AALEE 286 >gi|308174838|ref|YP_003921543.1| exoribonuclease (3'-5') [Bacillus amyloliquefaciens DSM 7] gi|307607702|emb|CBI44073.1| putative exoribonuclease (3'-5') [Bacillus amyloliquefaciens DSM 7] Length = 232 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 3/148 (2%) Query: 25 RIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83 IIE G V+ +D + TF ++ P RK + IT E + +F+ + Sbjct: 55 EIIEAGIVKTVDD-EVAETFSSYIKPKKFRKLTKRCKTFLNITQEDVDGGITFNEFIRKL 113 Query: 84 WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNS 143 + ++N + + P +L + L Sbjct: 114 NELDPDKNCTIVTWGNMDMKVLKQNCMFNHIPFPFKGELRDLSLEYKNFFGDRTLTGLWK 173 Query: 144 LCKRYGITISHRSKHGALLDSHLLSDVY 171 + YG + H AL D+ ++ Sbjct: 174 AAEEYGDK-GTGTHHKALDDAMTTHKLF 200 >gi|85711864|ref|ZP_01042919.1| oligoribonuclease [Idiomarina baltica OS145] gi|85694261|gb|EAQ32204.1| oligoribonuclease [Idiomarina baltica OS145] Length = 183 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 10/28 (35%), Positives = 16/28 (57%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + R I D+E TGL+ + D +IE+ Sbjct: 4 EQKSQRLIWIDLEMTGLNPEYDHVIEVA 31 >gi|256375198|ref|YP_003098858.1| oligoribonuclease [Actinosynnema mirum DSM 43827] gi|255919501|gb|ACU35012.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM 43827] Length = 208 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D E TGLD +D +IEI A+ Sbjct: 3 RLVWIDCEMTGLDLGSDALIEIAAL 27 >gi|134094115|ref|YP_001099190.1| oligoribonuclease [Herminiimonas arsenicoxydans] gi|133738018|emb|CAL61063.1| oligoribonuclease [Herminiimonas arsenicoxydans] Length = 198 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD ND IIEI V Sbjct: 28 LDMEMTGLDCDNDCIIEIAVV 48 >gi|288956945|ref|YP_003447286.1| ribonuclease D [Azospirillum sp. B510] gi|288909253|dbj|BAI70742.1| ribonuclease D [Azospirillum sp. B510] Length = 208 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 6/36 (16%) Query: 10 IVFDIETTGLDSKNDR--IIEI----GAVELLDYSK 39 + D ET GL+ DR ++++ GAV L+ + Sbjct: 25 VAIDTETMGLNPHRDRLCLVQLSAGDGAVHLVQFRP 60 >gi|262401567|ref|ZP_06078134.1| oligoribonuclease [Vibrio sp. RC586] gi|262352282|gb|EEZ01411.1| oligoribonuclease [Vibrio sp. RC586] Length = 181 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +IIE+ Sbjct: 11 IDLEMTGLDPETHKIIEMA 29 >gi|156551267|ref|XP_001600928.1| PREDICTED: similar to ENSANGP00000010833 [Nasonia vitripennis] Length = 224 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 10/148 (6%) Query: 12 FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQ-VFLCP--------NGRKNSPEALK 61 D+E +GLD +RI+EI + + + + FQ V P + +N+ Sbjct: 49 IDMEMSGLDVDKNRILEIACLITDENLNVISDEFQAVLYQPDTELDTMNDWCQNNHGKTG 108 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L + + + + F + + +A N+ + + ++ D + Sbjct: 109 LIDACKKSAETEDAVDINLLYFMMKYIPKGKCPLAGNSVYVDRLFLRKYMPVSNDYIHYR 168 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYG 149 I + K N K + Sbjct: 169 IIDVSSIKEVVKRWKPEMYSNIPKKEFN 196 >gi|315226274|ref|ZP_07868062.1| oligoribonuclease [Parascardovia denticolens DSM 10105] gi|315120406|gb|EFT83538.1| oligoribonuclease [Parascardovia denticolens DSM 10105] Length = 254 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 24/214 (11%), Positives = 59/214 (27%), Gaps = 7/214 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D E TGLD ++D + E+ V + ++ + + P+ + + + Sbjct: 38 IDCEMTGLDIEHDELCEVSVVPTDFNLKVLDQGIDLVIKPSQAAVNHMGDFVRRMHASSG 97 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K + + + + +K LD + Sbjct: 98 LIKEWEQGLSLAEAEARVIDYVKPFLPEDGQGKAHLAGNTIGSDKKFLDRFMPDLMGLLH 157 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-----MVGGSQINFGF 185 R S S + KHG + + ++ + + Sbjct: 158 YRTIDVSTLKELSRRWYPDVYSQRPVKHGGHRALADIIESIDELRYYRSAMFLPEPGLDA 217 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + + E+ ++ + + PL + + E Sbjct: 218 DQAQAACRQVEETSLLR-AYEQAGDPLTDQASAE 250 >gi|294786667|ref|ZP_06751921.1| oligoribonuclease [Parascardovia denticolens F0305] gi|294485500|gb|EFG33134.1| oligoribonuclease [Parascardovia denticolens F0305] Length = 242 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 24/214 (11%), Positives = 59/214 (27%), Gaps = 7/214 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D E TGLD ++D + E+ V + ++ + + P+ + + + Sbjct: 26 IDCEMTGLDIEHDELCEVSVVPTDFNLKVLDQGIDLVIKPSQAAVNHMGDFVRRMHASSG 85 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K + + + + +K LD + Sbjct: 86 LIKEWEQGLSLAEAEARVIDYVKPFLPEDGQGKAHLAGNTIGSDKKFLDRFMPDLMGLLH 145 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-----MVGGSQINFGF 185 R S S + KHG + + ++ + + Sbjct: 146 YRTIDVSTLKELSRRWYPDVYSQRPVKHGGHRALADIIESIDELRYYRSAMFLPEPGLDA 205 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + + E+ ++ + + PL + + E Sbjct: 206 DQAQAACRQVEETSLLR-AYEQAGDPLTDQASAE 238 >gi|229512381|ref|ZP_04401856.1| oligoribonuclease [Vibrio cholerae TMA 21] gi|229526905|ref|ZP_04416308.1| oligoribonuclease [Vibrio cholerae bv. albensis VL426] gi|229526997|ref|ZP_04416393.1| oligoribonuclease [Vibrio cholerae 12129(1)] gi|262172561|ref|ZP_06040239.1| oligoribonuclease [Vibrio mimicus MB-451] gi|229335520|gb|EEO01001.1| oligoribonuclease [Vibrio cholerae 12129(1)] gi|229336074|gb|EEO01093.1| oligoribonuclease [Vibrio cholerae bv. albensis VL426] gi|229350596|gb|EEO15541.1| oligoribonuclease [Vibrio cholerae TMA 21] gi|261893637|gb|EEY39623.1| oligoribonuclease [Vibrio mimicus MB-451] Length = 181 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +IIE+ Sbjct: 11 IDLEMTGLDPETHKIIEMA 29 >gi|71020669|ref|XP_760565.1| hypothetical protein UM04418.1 [Ustilago maydis 521] gi|46100453|gb|EAK85686.1| hypothetical protein UM04418.1 [Ustilago maydis 521] Length = 606 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 12 FDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFL 48 D E TGL + DR++EI + + ++ Sbjct: 426 IDCEMTGLSVENGDRLLEIACIITDGQLNPIDSGVSYV 463 >gi|291613511|ref|YP_003523668.1| Exonuclease RNase T and DNA polymerase III [Sideroxydans lithotrophicus ES-1] gi|291583623|gb|ADE11281.1| Exonuclease RNase T and DNA polymerase III [Sideroxydans lithotrophicus ES-1] Length = 181 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 18/31 (58%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 + +N+ + D+E TGL DRIIE+ V Sbjct: 1 MAQNQNNLVWIDMEMTGLLPDTDRIIEVALV 31 >gi|254498741|ref|ZP_05111457.1| oligoribonuclease [Legionella drancourtii LLAP12] gi|254352069|gb|EET10888.1| oligoribonuclease [Legionella drancourtii LLAP12] Length = 173 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 11/18 (61%), Positives = 13/18 (72%) Query: 15 ETTGLDSKNDRIIEIGAV 32 E TGLD + +RIIEI V Sbjct: 2 EMTGLDPEENRIIEIATV 19 >gi|116515288|ref|YP_802917.1| oligoribonuclease [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257142|gb|ABJ90824.1| oligoribonuclease [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 181 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 11/18 (61%), Positives = 14/18 (77%) Query: 12 FDIETTGLDSKNDRIIEI 29 D+ETTGL+ K +IIEI Sbjct: 11 VDLETTGLNPKIHKIIEI 28 >gi|229523521|ref|ZP_04412926.1| hypothetical protein VCA_001085 [Vibrio cholerae bv. albensis VL426] gi|229337102|gb|EEO02119.1| hypothetical protein VCA_001085 [Vibrio cholerae bv. albensis VL426] Length = 176 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 66/180 (36%), Gaps = 20/180 (11%) Query: 8 RKIVFDIE----------TTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVFLCPNGRKN 55 R + FD+E TTG IIEIG E+ R Q F+ P + Sbjct: 5 RVVCFDLEMCCWNENGVGTTG------EIIEIGLAEIDLAAGEIVKRA-QYFVKPEKDEI 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 S +L GIT ++ + + + + + A + D+ +N ++ Sbjct: 58 SLFCAELTGITPRKIEKQGRPLAEVIQSMVKNFGGSNKIYASWGRDDLILLNECQEKGLS 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P + TL + + R + + GI R H +D++ L+ + + M+ Sbjct: 118 VPFQEFLNLATLYRIQHRLKDKRIGHRAAQESQGIEWEGRQ-HSGYIDAYNLAKLALTML 176 >gi|254514041|ref|ZP_05126102.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium NOR5-3] gi|219676284|gb|EED32649.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium NOR5-3] Length = 183 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 1/44 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLC 49 M ++ D E +GLD ++ +G V + + Sbjct: 1 MSFLICDAEMSGLDPAKAELLSMGWVRVEGLEIVMGSAEHRLIR 44 >gi|225556491|gb|EEH04779.1| oligoribonuclease [Ajellomyces capsulatus G186AR] Length = 189 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 13/20 (65%) Query: 12 FDIETTGLDSKNDRIIEIGA 31 D E TGL+ + D+I++I Sbjct: 13 IDCEMTGLNPRTDKILQICC 32 >gi|153217654|ref|ZP_01951335.1| oligoribonuclease [Vibrio cholerae 1587] gi|229519881|ref|ZP_04409314.1| oligoribonuclease [Vibrio cholerae TM 11079-80] gi|297582247|ref|ZP_06944163.1| oligoribonuclease [Vibrio cholerae RC385] gi|124113399|gb|EAY32219.1| oligoribonuclease [Vibrio cholerae 1587] gi|229343122|gb|EEO08107.1| oligoribonuclease [Vibrio cholerae TM 11079-80] gi|297533548|gb|EFH72393.1| oligoribonuclease [Vibrio cholerae RC385] Length = 181 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +IIE+ Sbjct: 11 IDLEMTGLDPETHKIIEMA 29 >gi|108759901|ref|YP_629872.1| putative DNA polymerase II [Myxococcus xanthus DK 1622] gi|108463781|gb|ABF88966.1| putative DNA polymerase II [Myxococcus xanthus DK 1622] Length = 804 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 9/15 (60%), Positives = 12/15 (80%) Query: 12 FDIETTGLDSKNDRI 26 FD+ETTGLD + R+ Sbjct: 157 FDLETTGLDPAHHRV 171 >gi|254519816|ref|ZP_05131872.1| exonuclease [Clostridium sp. 7_2_43FAA] gi|226913565|gb|EEH98766.1| exonuclease [Clostridium sp. 7_2_43FAA] Length = 209 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 8/142 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQVFLCPNGRKNSPEALKL 62 M+ + FD ETT + N I ++ + + + F + + EA+ Sbjct: 1 MKLLFFDTETTSIKPGN--ICQLSYIVIDASVKPQKTIGKNFFFTV--DSMDEGAEAIHG 56 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + + + + I HN +FD+ F+ ELQ++ + L + Sbjct: 57 FSLEKLYDLSEGKEFLDCVHEFMPDFFDADFIIGHNVQFDIKFLKHELQQLWEAGLIDTT 116 Query: 123 IIDTLSIARRKHPSSRNDLNSL 144 + + S +L S Sbjct: 117 WEPKNTFCTMAYYKSPCNLPSP 138 >gi|254281582|ref|ZP_04956550.1| oligoribonuclease [gamma proteobacterium NOR51-B] gi|219677785|gb|EED34134.1| oligoribonuclease [gamma proteobacterium NOR51-B] Length = 180 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 12/19 (63%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL + R+IEI Sbjct: 10 VDLEMTGLVPEEHRVIEIA 28 >gi|158296273|ref|XP_557337.3| AGAP006662-PA [Anopheles gambiae str. PEST] gi|157016432|gb|EAL40132.3| AGAP006662-PA [Anopheles gambiae str. PEST] Length = 339 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 3/27 (11%) Query: 9 KIVFDIETTGLDSKND---RIIEIGAV 32 + FD+ETTGL +I E+ V Sbjct: 7 FVFFDLETTGLPEYEHFRTKITELSMV 33 >gi|118619032|ref|YP_907364.1| oligoribonuclease [Mycobacterium ulcerans Agy99] gi|166216272|sp|A0PU74|ORN_MYCUA RecName: Full=Oligoribonuclease gi|118571142|gb|ABL05893.1| oligoribonuclease Orn [Mycobacterium ulcerans Agy99] Length = 215 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%) Query: 7 MRK--IVFDIETTGLDSKNDRIIEIGAV 32 MR+ + D E TGLD D++IEI A+ Sbjct: 1 MREELVWIDCEMTGLDLGPDKLIEIAAL 28 >gi|15641389|ref|NP_231021.1| hypothetical protein VC1377 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121588011|ref|ZP_01677763.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121728525|ref|ZP_01681548.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147675170|ref|YP_001216938.1| hypothetical protein VC0395_A0992 [Vibrio cholerae O395] gi|153212725|ref|ZP_01948382.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153817774|ref|ZP_01970441.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153821312|ref|ZP_01973979.1| conserved hypothetical protein [Vibrio cholerae B33] gi|153825269|ref|ZP_01977936.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153828771|ref|ZP_01981438.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|183179375|ref|ZP_02957586.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|227081548|ref|YP_002810099.1| hypothetical protein VCM66_1332 [Vibrio cholerae M66-2] gi|229505042|ref|ZP_04394552.1| hypothetical protein VCF_000248 [Vibrio cholerae BX 330286] gi|229511288|ref|ZP_04400767.1| hypothetical protein VCE_002695 [Vibrio cholerae B33] gi|229515749|ref|ZP_04405208.1| hypothetical protein VCB_003407 [Vibrio cholerae TMA 21] gi|229518406|ref|ZP_04407850.1| hypothetical protein VCC_002430 [Vibrio cholerae RC9] gi|229521489|ref|ZP_04410908.1| hypothetical protein VIF_002026 [Vibrio cholerae TM 11079-80] gi|229529547|ref|ZP_04418937.1| hypothetical protein VCG_002642 [Vibrio cholerae 12129(1)] gi|229608046|ref|YP_002878694.1| hypothetical protein VCD_002964 [Vibrio cholerae MJ-1236] gi|254225334|ref|ZP_04918946.1| conserved hypothetical protein [Vibrio cholerae V51] gi|254286171|ref|ZP_04961131.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|254848499|ref|ZP_05237849.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|297578962|ref|ZP_06940890.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|298498539|ref|ZP_07008346.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9655872|gb|AAF94535.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547752|gb|EAX57843.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121629189|gb|EAX61629.1| conserved hypothetical protein [Vibrio cholerae V52] gi|124116375|gb|EAY35195.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|125622175|gb|EAZ50497.1| conserved hypothetical protein [Vibrio cholerae V51] gi|126511712|gb|EAZ74306.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126521130|gb|EAZ78353.1| conserved hypothetical protein [Vibrio cholerae B33] gi|146317053|gb|ABQ21592.1| conserved hypothetical protein [Vibrio cholerae O395] gi|148875724|gb|EDL73859.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149741097|gb|EDM55156.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|150423840|gb|EDN15781.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|183012786|gb|EDT88086.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|227009436|gb|ACP05648.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|227013292|gb|ACP09502.1| conserved hypothetical protein [Vibrio cholerae O395] gi|229333321|gb|EEN98807.1| hypothetical protein VCG_002642 [Vibrio cholerae 12129(1)] gi|229341587|gb|EEO06590.1| hypothetical protein VIF_002026 [Vibrio cholerae TM 11079-80] gi|229345121|gb|EEO10095.1| hypothetical protein VCC_002430 [Vibrio cholerae RC9] gi|229347518|gb|EEO12478.1| hypothetical protein VCB_003407 [Vibrio cholerae TMA 21] gi|229351253|gb|EEO16194.1| hypothetical protein VCE_002695 [Vibrio cholerae B33] gi|229357265|gb|EEO22182.1| hypothetical protein VCF_000248 [Vibrio cholerae BX 330286] gi|229370701|gb|ACQ61124.1| hypothetical protein VCD_002964 [Vibrio cholerae MJ-1236] gi|254844204|gb|EET22618.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|297536556|gb|EFH75389.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297542872|gb|EFH78922.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|327484047|gb|AEA78454.1| hypothetical protein VCLMA_A1213 [Vibrio cholerae LMA3894-4] Length = 176 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 66/180 (36%), Gaps = 20/180 (11%) Query: 8 RKIVFDIE----------TTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVFLCPNGRKN 55 R + FD+E TTG IIEIG E+ R Q F+ P + Sbjct: 5 RVVCFDLEMCCWNENGVGTTG------EIIEIGLAEIDLAAGEIVKRA-QYFVKPEKDEI 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 S +L GIT ++ + + + + + A + D+ +N ++ Sbjct: 58 SLFCAELTGITPRKIEKQGRPLAEVIQSMVKNFGGSNKIYASWGRDDLILLNECREKGLS 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P + TL + + R + + GI R H +D++ L+ + + M+ Sbjct: 118 VPFQEFLNLATLYRIQHRLKDKRIGHRAAQESQGIEWEGRQ-HSGYVDAYNLAKLALTML 176 >gi|258624475|ref|ZP_05719421.1| oligoribonuclease [Vibrio mimicus VM603] gi|258583224|gb|EEW08027.1| oligoribonuclease [Vibrio mimicus VM603] Length = 181 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +IIE+ Sbjct: 11 IDLEMTGLDPETHKIIEMA 29 >gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237] gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237] Length = 945 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 8/21 (38%), Positives = 12/21 (57%) Query: 10 IVFDIETTGLDSKNDRIIEIG 30 + FD ETTGL+ ++ I Sbjct: 374 VCFDTETTGLNPLTAELVGIA 394 >gi|227548036|ref|ZP_03978085.1| DNA polymerase III subunit epsilon [Corynebacterium lipophiloflavum DSM 44291] gi|227079890|gb|EEI17853.1| DNA polymerase III subunit epsilon [Corynebacterium lipophiloflavum DSM 44291] Length = 223 Score = 37.6 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 16/33 (48%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 R + FD+ETT + RI+ V + S T Sbjct: 8 RMLSFDLETTSANPGEARIVTSALVRIDGSSVT 40 >gi|148244632|ref|YP_001219326.1| ribonuclease T [Candidatus Vesicomyosocius okutanii HA] gi|146326459|dbj|BAF61602.1| ribonuclease T [Candidatus Vesicomyosocius okutanii HA] Length = 193 Score = 37.6 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 17/189 (8%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NG 52 M+ K+++R +V DIET G + K D ++EI + + ++ + + P G Sbjct: 1 MLIKDRIRGYLPVVIDIETGGFNEKTDAMLEICTIIIGIDKMNNLYPKKPQHFHIEPFKG 60 Query: 53 RKNSPEALKLHGITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 P A+K + I + + + A + HNA FD+G Sbjct: 61 SILEPSAIKFNSIDVDNPFRMAVKEVDAIKQIYTKVYTELKQKDCTRAILVGHNAFFDLG 120 Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 F+ A R ++ K I H AL D+ Sbjct: 121 FLRAATNRCKLKSPFHQFSTLDTVSLSALCYGETVLAKAIRK-ADIEWDDTCAHSALYDT 179 Query: 165 HLLSDVYIK 173 ++++ K Sbjct: 180 QKTAELFCK 188 >gi|328850543|gb|EGF99706.1| hypothetical protein MELLADRAFT_94133 [Melampsora larici-populina 98AG31] Length = 194 Score = 37.6 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 15/25 (60%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D E TGLD ++IIEI + Sbjct: 7 RLVWIDCEMTGLDLSKEQIIEIACI 31 >gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002] gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002] Length = 973 Score = 37.6 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 14/22 (63%) Query: 10 IVFDIETTGLDSKNDRIIEIGA 31 + +D ETTGLD + ++ IG Sbjct: 382 VAWDTETTGLDPREVDLVGIGC 403 >gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1] Length = 962 Score = 37.6 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 12/19 (63%) Query: 9 KIVFDIETTGLDSKNDRII 27 +I FD ETTGLD ++ Sbjct: 388 EISFDTETTGLDPNEAELV 406 >gi|300859054|ref|YP_003784037.1| hypothetical protein cpfrc_01637 [Corynebacterium pseudotuberculosis FRC41] gi|300686508|gb|ADK29430.1| hypothetical protein cpfrc_01637 [Corynebacterium pseudotuberculosis FRC41] gi|302206756|gb|ADL11098.1| Oligoribonuclease [Corynebacterium pseudotuberculosis C231] gi|302331309|gb|ADL21503.1| Oligoribonuclease [Corynebacterium pseudotuberculosis 1002] gi|308277000|gb|ADO26899.1| Oligoribonuclease [Corynebacterium pseudotuberculosis I19] Length = 219 Score = 37.6 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 16/25 (64%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD+ I+E+ A+ Sbjct: 20 RLVWIDLEMTGLDTHRHVIVEVAAL 44 >gi|153831492|ref|ZP_01984159.1| oligoribonuclease [Vibrio cholerae 623-39] gi|148873026|gb|EDL71161.1| oligoribonuclease [Vibrio cholerae 623-39] Length = 181 Score = 37.6 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +IIE+ Sbjct: 11 IDLEMTGLDPETHKIIEMA 29 >gi|88812805|ref|ZP_01128050.1| oligoribonuclease [Nitrococcus mobilis Nb-231] gi|88789875|gb|EAR20997.1| oligoribonuclease [Nitrococcus mobilis Nb-231] Length = 185 Score = 37.6 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD+ D IIEI Sbjct: 11 IDLEMTGLDTDRDCIIEIA 29 >gi|312887481|ref|ZP_07747079.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter paludis DSM 18603] gi|311300023|gb|EFQ77094.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter paludis DSM 18603] Length = 232 Score = 37.6 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 66/209 (31%), Gaps = 16/209 (7%) Query: 9 KIVFDIETTGL----------DSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP 57 + D ET+GL D+ +++ + + R ++ + +P Sbjct: 5 FLFIDTETSGLPKDWSQPYSNDANWPYALQVSWIIYTRAGEEIKRNNH-YIRDDDFTINP 63 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINAELQRI 113 EA +HGI+ EFL + + Q + + G + Sbjct: 64 EAYNIHGISREFLNLHGEWRKDVMQLLYQDMLQYKPMVVGHYVELDYNIAGVDFYRIGMD 123 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 N P S ++P + ++H A++D+ ++ + + Sbjct: 124 NPMDTLPRYCTMLGSKGYGRNPRVEYLRLGQLYSALFNRTLYNQHNAIIDAEATAECFFE 183 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPN 202 MM G + + K++ + N Sbjct: 184 MMRDGVVTDASIQRQALEREKKKPYVLKN 212 >gi|325957458|ref|YP_004292870.1| DNA polymerase iii polc-type [Lactobacillus acidophilus 30SC] gi|325334023|gb|ADZ07931.1| DNA polymerase iii polc-type [Lactobacillus acidophilus 30SC] Length = 272 Score = 37.6 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 11/18 (61%), Positives = 13/18 (72%) Query: 14 IETTGLDSKNDRIIEIGA 31 IETT L+ D+IIEI A Sbjct: 22 IETTDLNPTRDQIIEIAA 39 >gi|296129190|ref|YP_003636440.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas flavigena DSM 20109] gi|296021005|gb|ADG74241.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas flavigena DSM 20109] Length = 229 Score = 37.6 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D E TGLD +D ++E+ AV Sbjct: 25 RIVWVDCEMTGLDLVHDALVEVAAV 49 >gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo] gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis] Length = 1613 Score = 37.6 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 2/20 (10%) Query: 12 FDIETTGLDSKNDRI--IEI 29 DIETTGL+ + DRI ++I Sbjct: 1061 LDIETTGLNHREDRIRLLQI 1080 >gi|160898849|ref|YP_001564431.1| endodeoxyribonuclease [Delftia acidovorans SPH-1] gi|160364433|gb|ABX36046.1| endodeoxyribonuclease [Delftia acidovorans SPH-1] Length = 188 Score = 37.6 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLC 49 D ET GL ++ IGAV +++T TF + Sbjct: 9 IDTETMGLPPAG-ALLSIGAVFFDLHTQTLGPTFNRTIN 46 >gi|320534579|ref|ZP_08035028.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337] gi|320133200|gb|EFW25699.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337] Length = 213 Score = 37.6 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51 D E TGLD D +IE+ + + V + P Sbjct: 20 IDCEMTGLDQSADALIEVAVIVTDYELKPLADGIDVLIKPP 60 >gi|123442599|ref|YP_001006576.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089560|emb|CAL12409.1| exodeoxyribonuclease [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 221 Score = 37.6 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 17/169 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ETT ++EI +V+++D F+ P S EA+ +H IT+ + Sbjct: 5 VIDTETTSF---EGSVLEIASVDIVDGKIC-NPMSDFVKPTEA-ISFEAMAIHHITENMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D P + ++ D ++AHNA FD + ++ Sbjct: 60 ADAPLIEHVIDKYLD-----ADIYVAHNAAFDREKLPQITAPWVCTLKLSRKLWPEGGHG 114 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + + + + H AL D ++ +++ + M Sbjct: 115 NQYLRYAHGLNPDVPEGLHA-------HRALYDCYVTAELLLHMNRIAR 156 >gi|198438327|ref|XP_002132043.1| PREDICTED: similar to small fragment nuclease [Ciona intestinalis] Length = 205 Score = 37.6 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 45/172 (26%), Gaps = 7/172 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +N+M + D+E TGLD D I+E+ + + + S E L Sbjct: 31 RNRMVWV--DLEMTGLDVNKDHILEMACLVTDGNLNVIAQEEDLV----IHQSDEVLNNM 84 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH-NAKFDVGFINAELQRINKDPLDPSR 122 + + + + + I+ D Sbjct: 85 NEWCIEQHGRSGLTESVRKSMITLTQAEDIMLKFIQKHAPYKVCPLAGNTIHADKRFLDH 144 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + + L KR+ + K + + + ++ Sbjct: 145 YMPRFMDHLHYRIVDVSSIKELSKRWYPNVLPPPKGSSHRALEDILESIAEL 196 >gi|169628623|ref|YP_001702272.1| oligoribonuclease [Mycobacterium abscessus ATCC 19977] gi|169240590|emb|CAM61618.1| Probable oligoribonuclease [Mycobacterium abscessus] Length = 208 Score = 37.6 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37 D E TGLD +D++IEI A+ Sbjct: 11 IDCEMTGLDLGSDKLIEIAALVTDGD 36 >gi|291231281|ref|XP_002735595.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii] Length = 217 Score = 37.6 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 12/100 (12%) Query: 9 KIVFDIETTGLDSK----------NDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKN-S 56 + FD+E T +D K II+IGAV L + + FQ + P Sbjct: 7 YLCFDLEATCVDPKCPANQVTEGFQPEIIDIGAVILDSNTLEEKGEFQSYCRPVKHPTLQ 66 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96 P L+L I+ E + F ++ F D+ + + A Sbjct: 67 PFCLELTKISQETVDAADEFPDVWGRFIDWMKSKGLKPGA 106 >gi|269468419|gb|EEZ80084.1| exonuclease I [uncultured SUP05 cluster bacterium] Length = 471 Score = 37.6 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 16/126 (12%), Positives = 30/126 (23%), Gaps = 6/126 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D ET G+ K DRI + + + + P Sbjct: 8 DYETFGISPKTDRISQFAGIRTDENLNILDEHMFYCKPTHDCLPAP-----EACAVTGIS 62 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 +F + N+E+ N G+ + ID + + Sbjct: 63 PQDCEQKGVIEHEFIKKINSEFTTPNTCIV-GYNSIRFDDEFTRYTLYRNFIDPYAWHWK 121 Query: 133 KHPSSR 138 + Sbjct: 122 DGNTRW 127 >gi|258620689|ref|ZP_05715724.1| oligoribonuclease [Vibrio mimicus VM573] gi|258586887|gb|EEW11601.1| oligoribonuclease [Vibrio mimicus VM573] Length = 181 Score = 37.6 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +IIE+ Sbjct: 11 IDLEMTGLDPETHKIIEMA 29 >gi|256075149|ref|XP_002573883.1| hunchback protein [Schistosoma mansoni] gi|238659073|emb|CAZ30116.1| hunchback protein, putative [Schistosoma mansoni] Length = 485 Score = 37.6 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 5/169 (2%), Positives = 35/169 (20%), Gaps = 4/169 (2%) Query: 42 RTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 + F + P + D + + + + + + + Sbjct: 148 KDFHSDVPPENFSGKTIRSIRSKLQRCKQCDFVTDTKDEFWRHLRIHIKEDKRLECHLC- 206 Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 E + + + + + + + + + Sbjct: 207 ---CFITEYKHHLEYHMRNHMGSKPYKCPKCNYECVNKSMLNSHMKSHSNVYPYRCANCH 263 Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 + + + + + ++ + + N+ + Sbjct: 264 YATKYCHSLKLHLTKHEHKPAVVLNSDGSLPPYDNTVELMNVKRGPNIR 312 >gi|154687258|ref|YP_001422419.1| sporulation inhibitor KapD [Bacillus amyloliquefaciens FZB42] gi|154353109|gb|ABS75188.1| KapD [Bacillus amyloliquefaciens FZB42] Length = 205 Score = 37.6 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 45/148 (30%), Gaps = 3/148 (2%) Query: 25 RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSEF 83 IIE G V+ ++ T TF ++ P + IT + + +F+ + Sbjct: 28 EIIEAGIVKTVNDEVT-ETFSSYIKPKKFPKLTKRCKTFLNITQKDVDGGITFNEFIRKL 86 Query: 84 WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNS 143 + ++N + + P +L + L Sbjct: 87 NELDPDKNCTIVTWGNMDMKVLKQNCMFNHIPFPFKGELRDLSLEYKNFFGDRTLTGLWK 146 Query: 144 LCKRYGITISHRSKHGALLDSHLLSDVY 171 + YG + H AL D+ ++ Sbjct: 147 AAEEYGDK-GTGTHHKALDDARTTYKLF 173 >gi|154271267|ref|XP_001536487.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150409710|gb|EDN05154.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 189 Score = 37.6 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 13/20 (65%) Query: 12 FDIETTGLDSKNDRIIEIGA 31 D E TGL+ + D+I++I Sbjct: 13 IDCEMTGLNPRTDKILQICC 32 >gi|325474878|gb|EGC78064.1| RNA polymerase sigma-54 factor [Treponema denticola F0402] Length = 463 Score = 37.6 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 + +M+ + +N + ++ KE K N +L+ + + + EE D+H ++ Sbjct: 17 MNQQMLNAVAMLNLSSEELQEEVIKEVK---RNPALVFKTSSRVSAASAEEGDKHQSFLE 73 Query: 230 TLGKNAIWDRYISSN 244 ++ ++ + + ++ Sbjct: 74 SIEDDS--RKTLQAH 86 >gi|312962787|ref|ZP_07777274.1| exodeoxyribonuclease I [Pseudomonas fluorescens WH6] gi|311282814|gb|EFQ61408.1| exodeoxyribonuclease I [Pseudomonas fluorescens WH6] Length = 475 Score = 37.6 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALK 61 D ETTG++ +NDR +++ + + ++ ++ P A Sbjct: 8 DYETTGINPRNDRPLQVAGIRTDLELNEIGPPVNLYCRPGDDILPHPAAC 57 >gi|119585972|gb|EAW65568.1| three prime histone mRNA exonuclease 1, isoform CRA_a [Homo sapiens] Length = 288 Score = 37.6 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 16/189 (8%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G + IIE V L ++ + TFQ ++ P S + L G Sbjct: 71 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTG 130 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQN---------AEWIAHNAKFDVGFINAELQRINK 115 IT + + +F + + D+ + + + + + Sbjct: 131 ITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYP 190 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I K P S+ L + ++ G+ R H L DS ++ + ++M+ Sbjct: 191 PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRP-HCGLDDSKNIARIAVRML 249 Query: 176 VGGSQINFG 184 G ++ Sbjct: 250 QDGCELRIN 258 >gi|149183042|ref|ZP_01861496.1| sporulation inhibitor KapD [Bacillus sp. SG-1] gi|148849272|gb|EDL63468.1| sporulation inhibitor KapD [Bacillus sp. SG-1] Length = 214 Score = 37.6 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 13/171 (7%) Query: 10 IVFDIETTGL-------DSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ D E + + IIE G V + + T++ F ++ P+ + Sbjct: 16 VIIDFE---FSMPERQQNPRGFYPEIIETGLVAVQNGKITDK-FSTYVKPSAFPVLTKRC 71 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K + D ++ + N + I D+ + + D Sbjct: 72 KQFLSISQSDVDNGIPFHSLIQYLNEINRRGKNKIITWGNMDMKVLRNNCNKAGIDFPFT 131 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ID +R + H AL D+ ++ Sbjct: 132 GEFIDLSMEYKRFFGDQNQTGLWKAVQEYGREGVGKHHKALDDALTTYHIF 182 >gi|150402066|ref|YP_001329360.1| exonuclease RNase T and DNA polymerase III [Methanococcus maripaludis C7] gi|150033096|gb|ABR65209.1| Exonuclease RNase T and DNA polymerase III [Methanococcus maripaludis C7] Length = 190 Score = 37.6 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 5/126 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL-HGITD 67 + D ETTGL I ++ + + + F + + S + Sbjct: 2 YVFLDTETTGLHPGQ--IAQLSYLVTDEDLNLKKVFNQYYSVDRMSRSAAKIHGLTMEIL 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L + +F E D + + I HN FD+ F+ E +R+ + + + Sbjct: 60 DELSNGMTFEDTVDEVRDDLED--SIIIGHNISFDIRFLKTEFERLGPEYVPKDKFCTMF 117 Query: 128 SIARRK 133 Sbjct: 118 HFTPIC 123 >gi|326795802|ref|YP_004313622.1| oligoribonuclease [Marinomonas mediterranea MMB-1] gi|326546566|gb|ADZ91786.1| Oligoribonuclease [Marinomonas mediterranea MMB-1] Length = 182 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 7/62 (11%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70 D+E TGLD + + IIEI + T++ V PN + + + Sbjct: 11 IDLEMTGLDPEMNTIIEIATI------VTDKHLNVLAQGPNLVVHQDKGVMDAMDEWCTT 64 Query: 71 KD 72 Sbjct: 65 HH 66 >gi|294791066|ref|ZP_06756224.1| DNA polymerase III, epsilon subunit [Scardovia inopinata F0304] gi|294458963|gb|EFG27316.1| DNA polymerase III, epsilon subunit [Scardovia inopinata F0304] Length = 282 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 4/48 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD---YSKTNRTFQVFLCPNGRKNS 56 FD ETTG + D I+ V L + + T + P N Sbjct: 29 FDTETTGTRAGKDAIVSASLV-LRNPALGFNGDSTQDWIINPGIPMNP 75 >gi|121606153|ref|YP_983482.1| exonuclease, RNase T and DNA polymerase III [Polaromonas naphthalenivorans CJ2] gi|120595122|gb|ABM38561.1| Exonuclease, RNase T and DNA polymerase III [Polaromonas naphthalenivorans CJ2] Length = 550 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 5/59 (8%) Query: 9 KIVFDIETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 ++ D ETTGL ++E+GA + + F+ L N + Sbjct: 6 WVLIDTETTGLTVPIF---VVELGAQRMRGWLPEGSPFRRLLNQNLDIPPASSRVHGYT 61 >gi|297243822|ref|ZP_06927752.1| oligoribonuclease [Gardnerella vaginalis AMD] gi|296888243|gb|EFH26985.1| oligoribonuclease [Gardnerella vaginalis AMD] Length = 235 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50 R I D E TGLD +D + E+ V + + + + P Sbjct: 16 RLIWIDCEMTGLDIFHDELCEVSVVPTDFNLKVLDDGIDLVIKP 59 >gi|42527905|ref|NP_973003.1| RNA polymerase sigma-54 factor, putative [Treponema denticola ATCC 35405] gi|41818950|gb|AAS12922.1| RNA polymerase sigma-54 factor, putative [Treponema denticola ATCC 35405] Length = 463 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 + +M+ + +N + ++ KE K N +L+ + + + EE D+H ++ Sbjct: 17 MNQQMLNAVAMLNLSSEELQEEVIKEVK---RNPALVFKTSSRVSAASAEEGDKHQSFLE 73 Query: 230 TLGKNAIWDRYISSN 244 ++ ++ + + ++ Sbjct: 74 SIEDDS--RKTLQAH 86 >gi|261252841|ref|ZP_05945414.1| exodeoxyribonuclease I [Vibrio orientalis CIP 102891] gi|260936232|gb|EEX92221.1| exodeoxyribonuclease I [Vibrio orientalis CIP 102891] Length = 474 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 7/159 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 M ++++ FD ET G DR + V D++ ++ P + Sbjct: 1 MRQEHQPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQP-----PADY 55 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L + + +F + + + N ++G+ + Sbjct: 56 LPHPEAALITGITPQTAETQGLSEPEFIAKIHEQLATPNT-INLGYNSIRFDDEVTRYTC 114 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158 ID + + + S + L+ + Y + Sbjct: 115 YRNFIDPYAWSWQNGNSRWDLLDVMRACYALRPEGIEWP 153 >gi|224083100|ref|XP_002189554.1| PREDICTED: REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Taeniopygia guttata] Length = 232 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 17/25 (68%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD + D+I+E+ + Sbjct: 37 RMVWVDLEMTGLDVEKDQILEMACL 61 >gi|306827727|ref|ZP_07460999.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes ATCC 10782] gi|304430045|gb|EFM33082.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes ATCC 10782] Length = 819 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 32/196 (16%) Query: 1 MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48 M +K + V D+E TG ++II +++ + Sbjct: 1 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 46 Query: 49 CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 P+ + L GITD+ L P F + + + ++AHN KFD + Sbjct: 47 NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 102 Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 + +DT+ +A+ P R + I H A+ D+ + Sbjct: 103 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLGHLSRQ-LNIDLAEAHTAIADARATA 160 Query: 169 DVYIKMMVGGSQINFG 184 ++++++ + Sbjct: 161 ILFLRLLQKIESLPIE 176 >gi|308235417|ref|ZP_07666154.1| oligoribonuclease [Gardnerella vaginalis ATCC 14018] gi|311114824|ref|YP_003986045.1| cyanuric acid amidohydrolase [Gardnerella vaginalis ATCC 14019] gi|310946318|gb|ADP39022.1| cyanuric acid amidohydrolase [Gardnerella vaginalis ATCC 14019] Length = 235 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50 R I D E TGLD +D + E+ V + + + + P Sbjct: 16 RLIWIDCEMTGLDIFHDELCEVSVVPTDFNLKVLDDGIDLVIKP 59 >gi|209559092|ref|YP_002285564.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes NZ131] gi|209540293|gb|ACI60869.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Streptococcus pyogenes NZ131] Length = 833 Score = 37.2 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 32/196 (16%) Query: 1 MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48 M +K + V D+E TG ++II +++ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 60 Query: 49 CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 P+ + L GITD+ L P F + + + ++AHN KFD + Sbjct: 61 NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 116 Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 + +DT+ +A+ P R + I H A+ D+ + Sbjct: 117 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLGHLSRQ-LNIDLAEAHTAIADARATA 174 Query: 169 DVYIKMMVGGSQINFG 184 ++++++ + Sbjct: 175 ILFLRLLQKIESLPIE 190 >gi|94993950|ref|YP_602048.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS10750] gi|94547458|gb|ABF37504.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes MGAS10750] Length = 833 Score = 37.2 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 32/196 (16%) Query: 1 MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48 M +K + V D+E TG ++II +++ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 60 Query: 49 CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 P+ + L GITD+ L P F + + + ++AHN KFD + Sbjct: 61 NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 116 Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 + +DT+ +A+ P R + I H A+ D+ + Sbjct: 117 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLGHLSRQ-LNIDLAEAHTAIADARATA 174 Query: 169 DVYIKMMVGGSQINFG 184 ++++++ + Sbjct: 175 ILFLRLLQKIESLPIE 190 >gi|94988157|ref|YP_596258.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS9429] gi|94992044|ref|YP_600143.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS2096] gi|94541665|gb|ABF31714.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes MGAS9429] gi|94545552|gb|ABF35599.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes MGAS2096] Length = 833 Score = 37.2 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 32/196 (16%) Query: 1 MIRKNKMRKIVFDIETTGLDSK------------NDRIIEIGAVELLDYSKTNRTFQVFL 48 M +K + V D+E TG ++II +++ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGNKII--------------DSYETDV 60 Query: 49 CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 P+ + L GITD+ L P F + + + ++AHN KFD + Sbjct: 61 NPH-ESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA- 116 Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 + +DT+ +A+ P R + I H A+ D+ + Sbjct: 117 -EALFLEGYELTIPRVDTVELAQLFFPRFEKYNLGHLSRQ-LNIDLAEAHTAIADARATA 174 Query: 169 DVYIKMMVGGSQINFG 184 ++++++ + Sbjct: 175 ILFLRLLQKIESLPIE 190 >gi|50760099|ref|XP_417900.1| PREDICTED: similar to CGI-114 protein [Gallus gallus] Length = 233 Score = 37.2 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 17/25 (68%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD + D+I+E+ + Sbjct: 38 RMVWVDLEMTGLDVEKDQILEMACL 62 >gi|283783530|ref|YP_003374284.1| exonuclease [Gardnerella vaginalis 409-05] gi|298252612|ref|ZP_06976406.1| oligoribonuclease [Gardnerella vaginalis 5-1] gi|283441129|gb|ADB13595.1| exonuclease [Gardnerella vaginalis 409-05] gi|297532976|gb|EFH71860.1| oligoribonuclease [Gardnerella vaginalis 5-1] Length = 235 Score = 37.2 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP 50 R I D E TGLD +D + E+ V + + + + P Sbjct: 16 RLIWIDCEMTGLDIFHDELCEVSVVPTDFNLKVLDDGIDLVIKP 59 >gi|195503017|ref|XP_002098476.1| GE23924 [Drosophila yakuba] gi|194184577|gb|EDW98188.1| GE23924 [Drosophila yakuba] Length = 184 Score = 37.2 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 13 DIETTGLDSKNDRIIEIGAV---ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 D+E TGLD + D+I+E+ + + L+ F + Sbjct: 15 DLEMTGLDIEKDKILEVSCIITDKDLNVKSEGPCFA--INHPQEVYDTMNEWCKEHHY 70 >gi|134045738|ref|YP_001097224.1| exonuclease, RNase T and DNA polymerase III [Methanococcus maripaludis C5] gi|132663363|gb|ABO35009.1| Exonuclease, RNase T and DNA polymerase III [Methanococcus maripaludis C5] Length = 191 Score = 37.2 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 3/125 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL I ++ + + + F + + S + + Sbjct: 2 YVFLDTETTGLHPGQ--IAQLSYLVTDEDLNLKKVFNQYYLVDHMSRSAAKVHGLTMDIL 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +++ I HN FD+ F+ AE +R+ + + + Sbjct: 60 DELSNGMTFEDTVDEVRD-DLEDSVIIGHNISFDIRFLKAEFERLGPEYIPKDKFCTMFH 118 Query: 129 IARRK 133 Sbjct: 119 FTPIC 123 >gi|111026133|ref|YP_708416.1| exonuclease [Rhodococcus jostii RHA1] gi|110824976|gb|ABH00258.1| possible exonuclease [Rhodococcus jostii RHA1] Length = 190 Score = 37.2 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 8/124 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGIT 66 R +V D+E+T LD IIEI V + T + P P+A +HGI Sbjct: 20 RAVVLDVESTNLD---GSIIEI-CVL---DAATGDPLLDTLVDPGEVPIHPDAYAVHGIA 72 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L P +S++ + + ++ L S + Sbjct: 73 PADLIGAPGWSTVHQALIAVTTGRVTLSYHSEFDKGRVLHDCARHGLDPAHLADSEMWGC 132 Query: 127 LSIA 130 + Sbjct: 133 IMRM 136 >gi|39945028|ref|XP_362051.1| hypothetical protein MGG_04496 [Magnaporthe oryzae 70-15] gi|145011396|gb|EDJ96052.1| hypothetical protein MGG_04496 [Magnaporthe oryzae 70-15] Length = 223 Score = 37.2 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 2/57 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGL+ ++ IIEI + K + + + Sbjct: 11 IDCEMTGLNPDSEEIIEIFCLVTDGDLNLKDEEGWGTVVHQTQERMDKMDEWCTKQH 67 >gi|312199001|ref|YP_004019062.1| exonuclease RNase T and DNA polymerase III [Frankia sp. EuI1c] gi|311230337|gb|ADP83192.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EuI1c] Length = 238 Score = 37.2 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%) Query: 5 NKM-RKIVFDIETTGLDSKNDRIIEIGAVELLD 36 +M R + D E TGLD +D ++E+ + Sbjct: 11 RQMDRLVWIDCEMTGLDPASDVLLEVACLVTDG 43 >gi|303240238|ref|ZP_07326757.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio cellulolyticus CD2] gi|302592148|gb|EFL61877.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio cellulolyticus CD2] Length = 223 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 60/179 (33%), Gaps = 18/179 (10%) Query: 9 KIVFDIE-TTG-----------LDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPN- 51 IV D+E +TG L K II+IGA+ L K F F+ P Sbjct: 37 YIVLDLEFSTGYKYVNKDYAKTLFPKYEKRPAEIIQIGAIMLNHNYKIIDKFNKFITPCI 96 Query: 52 GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 +K + +L G+ DE LK+ SF F + ++ + D + Sbjct: 97 YQKINKYVTELTGLNDENLKNNISFVECMDSFEKWIGKKEYILCGW-SNSDQKVFEDNFK 155 Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++ ++D I + S H + + A +++ + Sbjct: 156 YHSQKCSLNLNMLDIQKIFNPEKQISLKKAIDELNIQKSKPFHNALNDAEYTANIFQKI 214 >gi|154314837|ref|XP_001556742.1| hypothetical protein BC1G_04760 [Botryotinia fuckeliana B05.10] gi|150848298|gb|EDN23491.1| hypothetical protein BC1G_04760 [Botryotinia fuckeliana B05.10] Length = 180 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 2/54 (3%) Query: 15 ETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALKLHGIT 66 E TGLD +ND IIEI V + + + + Sbjct: 3 EMTGLDVENDVIIEISCVITNGNLEVMDEKGWNAVIHQDQETMDKMDEWCTTTH 56 >gi|320352856|ref|YP_004194195.1| Exonuclease RNase T and DNA polymerase III [Desulfobulbus propionicus DSM 2032] gi|320121358|gb|ADW16904.1| Exonuclease RNase T and DNA polymerase III [Desulfobulbus propionicus DSM 2032] Length = 181 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 9/29 (31%), Positives = 16/29 (55%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT 40 D+E TGL+ D+I+E+ V + + Sbjct: 10 IDLEMTGLNPFTDKILEVATVVTDSHLEI 38 >gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000] gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000] Length = 931 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIG-AVE 33 N + + D ETTGLD+ D II I A++ Sbjct: 357 NAKKLVCIDFETTGLDTLTDEIIGISFAIK 386 >gi|290473715|ref|YP_003466589.1| putative DNA-directed DNA polymerase [Xenorhabdus bovienii SS-2004] gi|289173022|emb|CBJ79795.1| putative DNA-directed DNA polymerase [Xenorhabdus bovienii SS-2004] Length = 245 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 72/210 (34%), Gaps = 12/210 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDE 68 ++ D ETTGL S ++ +E+ + + P +K P+A ++H IT+E Sbjct: 22 VILDTETTGLKSDDEI------IEISIINADGNVLLDTLIKPQ-KKIPPDATRIHRITNE 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ KP +S ++ ++ + + + + + + + + + Sbjct: 75 DVQHKPLWSDVYKKYREIVEGKTVVIYNKSYDTKIIRQTCKKYELPTPRIKSECAMLLYA 134 Query: 129 IA----RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 ++ + + H AL D+ + ++ M ++ Sbjct: 135 KYEGIINKRTCEYKWHKLTDAIYKNNIQVTGEAHRALTDARMTLELLKFMACAEVNVSPR 194 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214 N+ +K+ K + K+ Sbjct: 195 VHMNDSVHYKKNKPSNSIQPTKKKSNFQKI 224 >gi|17542402|ref|NP_501748.1| PIS (Pax-2, IA-1/6, Smad-2 interacting protein) homolog family member (pis-1) [Caenorhabditis elegans] gi|5824613|emb|CAB54313.1| C. elegans protein T13F2.3b, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 1076 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 3/124 (2%) Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + K P+ + I + P R ++ + + + + Sbjct: 679 AQEWKVPVVNFQWIADAYVCDEASPQKRPNVENPRYQLENPVMTNVNTSPNHIEGASQE- 737 Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPN--ISLLKRDKPLFTRITKEELDEHDKTI 228 + MM ++ + K N KR T++E+ + Sbjct: 738 FGAMMSCWKSQTIIADQAYEKARQNRKTLQNNTFFFPSKRLSDQAVAPTEDEIKSSRARL 797 Query: 229 QTLG 232 + Sbjct: 798 DEIK 801 >gi|326478035|gb|EGE02045.1| zinc knuckle domain-containing protein [Trichophyton equinum CBS 127.97] Length = 542 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 16/174 (9%), Positives = 32/174 (18%), Gaps = 5/174 (2%) Query: 51 NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 G + K + + F + + + Sbjct: 241 EGHLSDVCPNKKCEHCGAWEVHESRFCPTWRRCQKCRERGHDKDSCSAPLQGSAAEVPCD 300 Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + ++ + S + SH S Sbjct: 301 LCGSDRHIESQCDLMWKQPHPTYTTGKLFISISCAQCTSSQHLIGDCPSVRAPSHSTSWS 360 Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224 + T++ +T I LK T EE + H Sbjct: 361 L-----KAFDPSIISNTSQSSTSGPNARTNGAIPQLKIKGRAQREPTPEEHELH 409 >gi|326470809|gb|EGD94818.1| hypothetical protein TESG_02321 [Trichophyton tonsurans CBS 112818] Length = 542 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 16/174 (9%), Positives = 32/174 (18%), Gaps = 5/174 (2%) Query: 51 NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 G + K + + F + + + Sbjct: 241 EGHLSDVCPNKKCEHCGAWEVHESRFCPTWRRCQKCRERGHDKDSCSAPLQGSAAEVPCD 300 Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + ++ + S + SH S Sbjct: 301 LCGSDRHIESQCDLMWKQPHPTYTTGKLFISISCAQCTSSQHLIGDCPSVRAPSHSTSWS 360 Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224 + T++ +T I LK T EE + H Sbjct: 361 L-----KAFDPSIISNTSQSSTSGPNARTNGAIPQLKIKGRAQREPTPEEHELH 409 >gi|319761926|ref|YP_004125863.1| exonuclease rnase t and DNA polymerase iii [Alicycliphilus denitrificans BC] gi|330826210|ref|YP_004389513.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus denitrificans K601] gi|317116487|gb|ADU98975.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus denitrificans BC] gi|329311582|gb|AEB85997.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus denitrificans K601] Length = 203 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 8/21 (38%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D E +GL+ + +R++EI V Sbjct: 33 LDCEMSGLNPETERLLEIAVV 53 >gi|222111865|ref|YP_002554129.1| oligoribonuclease [Acidovorax ebreus TPSY] gi|221731309|gb|ACM34129.1| Exonuclease RNase T and DNA polymerase III [Acidovorax ebreus TPSY] Length = 192 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 8/21 (38%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D E +GL+ + +R++EI V Sbjct: 22 LDCEMSGLNPETERLLEIAVV 42 >gi|121595648|ref|YP_987544.1| oligoribonuclease [Acidovorax sp. JS42] gi|166215746|sp|A1WB43|ORN_ACISJ RecName: Full=Oligoribonuclease gi|120607728|gb|ABM43468.1| Exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42] Length = 192 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 8/21 (38%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D E +GL+ + +R++EI V Sbjct: 22 LDCEMSGLNPETERLLEIAVV 42 >gi|115352016|ref|YP_773855.1| exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria AMMD] gi|115282004|gb|ABI87521.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria AMMD] Length = 180 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 13/178 (7%) Query: 2 IRKNKMRKIVF--DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 ++ N R++ D+ET+G ++ IGA ++ D +TF L P R P+A Sbjct: 1 MKSN--REVFLSVDVETSGPIPGEFSLLTIGACDVFD---PQQTFSCELKPTTRNADPKA 55 Query: 60 LKLHG------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 L++ G D + ++ NA FD F+N R Sbjct: 56 LEVTGLSLDRLERDGLDPVVGMQKFRDWVISTAGPDATPVFVGFNAPFDWSFVNYYFHRY 115 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + +D S+ SS S + + + H AL D+ ++++ Sbjct: 116 LGENPFGFAALDIKSMYMGAARSSWAQTRSSQIAAALNPTLKGDHDALHDAQYQAELF 173 >gi|166032316|ref|ZP_02235145.1| hypothetical protein DORFOR_02019 [Dorea formicigenerans ATCC 27755] gi|166028039|gb|EDR46796.1| hypothetical protein DORFOR_02019 [Dorea formicigenerans ATCC 27755] Length = 218 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 59/188 (31%), Gaps = 8/188 (4%) Query: 7 MRKIVFDIETTGLDSKN--------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M +V D+E + + I+IGAV L + K T F+ P Sbjct: 1 MNYLVIDLEMCKVPRDYRSKRYKYANETIQIGAVLLDEEFKRIGTLSQFVHPEHGVIDYF 60 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 L GI + +K P ++ ++ + A + ++ + D Sbjct: 61 IENLTGIKNGQVKHTPRLQKALLHMLNWIGDREYKVYAWSGSDRAQILHEIKAKNIVDEK 120 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 S + ++ + + R +++ L V +++ Sbjct: 121 IASFMEESRWVDYQDIFMKRYEMSRKMSLEEALGRADIDPEGRFHDGLNDAVNTGLLIEK 180 Query: 179 SQINFGFK 186 ++N ++ Sbjct: 181 LELNPDYQ 188 >gi|55670498|pdb|1W0H|A Chain A, Crystallographic Structure Of The Nuclease Domain Of 3'hexo, A Deddh Family Member, Bound To Ramp Length = 204 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 6/82 (7%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 + D E T G + IIE V L ++ + TFQ ++ P S + L G Sbjct: 14 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTG 73 Query: 65 ITDEFLKDKPSFSSIFSEFWDF 86 IT + + +F + + D+ Sbjct: 74 ITQDQVDRADTFPQVLKKVIDW 95 >gi|238918361|ref|YP_002931875.1| oligoribonuclease [Edwardsiella ictaluri 93-146] gi|238867929|gb|ACR67640.1| oligoribonuclease [Edwardsiella ictaluri 93-146] Length = 167 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 10/14 (71%), Positives = 11/14 (78%) Query: 17 TGLDSKNDRIIEIG 30 TGLD + DRIIEI Sbjct: 2 TGLDPQRDRIIEIA 15 >gi|17542400|ref|NP_501749.1| PIS (Pax-2, IA-1/6, Smad-2 interacting protein) homolog family member (pis-1) [Caenorhabditis elegans] gi|3879830|emb|CAB03354.1| C. elegans protein T13F2.3a, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 1074 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 3/124 (2%) Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + K P+ + I + P R ++ + + + + Sbjct: 677 AQEWKVPVVNFQWIADAYVCDEASPQKRPNVENPRYQLENPVMTNVNTSPNHIEGASQE- 735 Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPN--ISLLKRDKPLFTRITKEELDEHDKTI 228 + MM ++ + K N KR T++E+ + Sbjct: 736 FGAMMSCWKSQTIIADQAYEKARQNRKTLQNNTFFFPSKRLSDQAVAPTEDEIKSSRARL 795 Query: 229 QTLG 232 + Sbjct: 796 DEIK 799 >gi|333029493|ref|ZP_08457554.1| DNA polymerase I [Bacteroides coprosuis DSM 18011] gi|332740090|gb|EGJ70572.1| DNA polymerase I [Bacteroides coprosuis DSM 18011] Length = 928 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Query: 2 IRKNKM--RKIVFDIETTGLDSKNDRIIEI 29 + K M ++I D ETTGL++ I+ I Sbjct: 348 LSKKLMPFKEIALDTETTGLEAMEAEIVGI 377 >gi|310658482|ref|YP_003936203.1| hypothetical protein CLOST_1178 [Clostridium sticklandii DSM 519] gi|308825260|emb|CBH21298.1| protein of unknown function [Clostridium sticklandii] Length = 303 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 2/71 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL--LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FDIETTGL+SK D II I A + + F + + + Sbjct: 23 FDIETTGLNSKYDSIILICAAFYYSDNEILIRQYFAEDIKDEKSIILYFLEDIASMRRCI 82 Query: 70 LKDKPSFSSIF 80 + +F F Sbjct: 83 NFNGNTFDLPF 93 >gi|220934255|ref|YP_002513154.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp. HL-EbGR7] gi|219995565|gb|ACL72167.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp. HL-EbGR7] Length = 181 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD+ ND IIEI Sbjct: 11 IDLEMTGLDTDNDYIIEIA 29 >gi|290979061|ref|XP_002672253.1| predicted protein [Naegleria gruberi] gi|284085828|gb|EFC39509.1| predicted protein [Naegleria gruberi] Length = 1200 Score = 37.2 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 7/82 (8%) Query: 8 RKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + I+FD ETTG + +D +I E T + + P + S + K+ GI Sbjct: 808 KYILFDFETTGFWTNDDPPKITE----YCFLNMATGESIYGLVNP-TKSISYHSTKITGI 862 Query: 66 TDEFLKDKPSFSSIFSEFWDFF 87 +++DKP DF Sbjct: 863 NLNYVRDKPIIEKELDFIIDFI 884 >gi|332559626|ref|ZP_08413948.1| ribonuclease D [Rhodobacter sphaeroides WS8N] gi|332277338|gb|EGJ22653.1| ribonuclease D [Rhodobacter sphaeroides WS8N] Length = 204 Score = 37.2 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%) Query: 10 IVFDIETTGLDSKNDR--IIEIGA 31 + D ET GLD + DR ++++ A Sbjct: 20 VAIDTETMGLDPRRDRLCVVQLSA 43 >gi|330960097|gb|EGH60357.1| oligoribonuclease [Pseudomonas syringae pv. maculicola str. ES4326] Length = 178 Score = 37.2 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 6/44 (13%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF 47 +NK I D+E TGLD D IIE+ + T+ Sbjct: 2 QNKQNLIWIDLEMTGLDPDTDVIIEMATI------ITDSELSTL 39 >gi|221640647|ref|YP_002526909.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131] gi|221161428|gb|ACM02408.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131] Length = 204 Score = 37.2 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%) Query: 10 IVFDIETTGLDSKNDR--IIEIGA 31 + D ET GLD + DR ++++ A Sbjct: 20 VAIDTETMGLDPRRDRLCVVQLSA 43 >gi|77464733|ref|YP_354237.1| ribonuclease D [Rhodobacter sphaeroides 2.4.1] gi|77389151|gb|ABA80336.1| Ribonuclease D [Rhodobacter sphaeroides 2.4.1] Length = 204 Score = 37.2 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%) Query: 10 IVFDIETTGLDSKNDR--IIEIGA 31 + D ET GLD + DR ++++ A Sbjct: 20 VAIDTETMGLDPRRDRLCVVQLSA 43 >gi|126463573|ref|YP_001044687.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029] gi|126105237|gb|ABN77915.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029] Length = 204 Score = 37.2 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%) Query: 10 IVFDIETTGLDSKNDR--IIEIGA 31 + D ET GLD + DR ++++ A Sbjct: 20 VAIDTETMGLDPRRDRLCVVQLSA 43 >gi|254520242|ref|ZP_05132298.1| exonuclease [Clostridium sp. 7_2_43FAA] gi|226913991|gb|EEH99192.1| exonuclease [Clostridium sp. 7_2_43FAA] Length = 300 Score = 37.2 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 18/27 (66%) Query: 24 DRIIEIGAVELLDYSKTNRTFQVFLCP 50 + IIEIGA++L +Y K F+ ++ P Sbjct: 39 NEIIEIGAIKLDNYMKPLEEFKTYIKP 65 >gi|118594944|ref|ZP_01552291.1| oligoribonuclease [Methylophilales bacterium HTCC2181] gi|118440722|gb|EAV47349.1| oligoribonuclease [Methylophilales bacterium HTCC2181] Length = 182 Score = 37.2 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 20/32 (62%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 M KN I D+E +GLD +ND+++EI V Sbjct: 1 MDEKNNNNLIWLDMEMSGLDPENDKVLEIAVV 32 >gi|328949709|ref|YP_004367044.1| ATP-dependent DNA helicase, RecQ family [Marinithermus hydrothermalis DSM 14884] gi|328450033|gb|AEB10934.1| ATP-dependent DNA helicase, RecQ family [Marinithermus hydrothermalis DSM 14884] Length = 1673 Score = 37.2 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 1/24 (4%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEI 29 M+ + D+E TG D +I++I Sbjct: 1 MKPYVFIDLEATGTDPNQAQILQI 24 >gi|315122155|ref|YP_004062644.1| exonuclease I [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495557|gb|ADR52156.1| exonuclease I [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 472 Score = 37.2 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 3/118 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---SPEALKLHGI 65 +++D ET GLD DR + + + +T ++ +VF C L Sbjct: 4 FVIYDYETFGLDVARDRPAQFAGIRIDHQLETIQSKEVFFCKPSDDYLVDPESVLITGIT 63 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + L+D + FF + N +N + + N Sbjct: 64 PQKALRDGVVEHEFAQRVYQFFCKPNTCIFGYNNIRFDDKYSQNIFYRNFYDPYGWSY 121 >gi|213621109|ref|ZP_03373892.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 166 Score = 37.2 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 10/14 (71%), Positives = 11/14 (78%) Query: 17 TGLDSKNDRIIEIG 30 TGLD + DRIIEI Sbjct: 1 TGLDPERDRIIEIA 14 >gi|330860723|emb|CBX71015.1| exodeoxyribonuclease 10 [Yersinia enterocolitica W22703] Length = 220 Score = 37.2 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 17/171 (9%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D ET GL I+EI +++++D + + + P+ R S +A+ +H IT Sbjct: 1 MYFRVIDTETCGL---EGGIVEIASIDVMDGALS-NPMSDLVSPD-RPISLDAMVIHHIT 55 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E ++ KP + ++ + ++AHNA FD G + ++ Sbjct: 56 EEMVEGKPRIAVAVRKYQ-----GSPYYVAHNAPFDRGVLPEMGG-------QWICMLKL 103 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + S L + + H AL D ++ + + ++M Sbjct: 104 ARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIMRD 154 >gi|271968895|ref|YP_003343091.1| oligoribonuclease [Streptosporangium roseum DSM 43021] gi|270512070|gb|ACZ90348.1| putative oligoribonuclease; K01175 [Streptosporangium roseum DSM 43021] Length = 200 Score = 37.2 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGR 53 D E TGLD D ++E+ V + D + V + P Sbjct: 8 IDCEMTGLDLGRDALVEVACV-VTDGELNQLDEGVDVVIKPPPE 50 >gi|215273692|dbj|BAG84710.1| erythrocyte protein band 4.1 [Mus musculus] Length = 823 Score = 37.2 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 10/38 (26%) Query: 217 TKEELDEHDKTIQTLGKNAI----------WDRYISSN 244 ++EE+ +H +I L KN + WD+ +S++ Sbjct: 633 SQEEIKKHHASISELKKNCMESVPEPRPSEWDKRLSTH 670 >gi|190572046|ref|YP_001966288.1| unknown [Pseudomonas sp. CT14] gi|75707029|gb|ABA25992.1| unknown [Pseudomonas sp. CT14] Length = 197 Score = 37.2 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 14/179 (7%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTG+ D + EI ++ + P + EA +H IT++ + Sbjct: 16 LDTETTGVG-DGDEVCEITILDASGTPL----LNTLIRP-TQPIPAEATGIHRITNDMVA 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIA--------HNAKFDVGFINAELQRINKDPLDPSRI 123 P++ I ++ + + G + L L Sbjct: 70 TAPAWPEIAEQYASIVSGRTVVAYNASFDERLLSQTHQRHGLVAPALATACAMLLYAEWH 129 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + + L + G+ + A L Y+ G + + Sbjct: 130 GEWVEGRYGAWQWRWIKLIEAARACGVLEDGAHRSLADARMTLGVLRYLHKRTNGRKPS 188 >gi|73669256|ref|YP_305271.1| hypothetical protein Mbar_A1749 [Methanosarcina barkeri str. Fusaro] gi|72396418|gb|AAZ70691.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 249 Score = 37.2 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 7/39 (17%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 DIETTGL D I V + + ++ ++ Sbjct: 89 FVDIETTGLSKSRDEIT---IVGIYNGKESK----TYIK 120 >gi|254787466|ref|YP_003074895.1| oligoribonuclease [Teredinibacter turnerae T7901] gi|237686441|gb|ACR13705.1| oligoribonuclease [Teredinibacter turnerae T7901] Length = 182 Score = 37.2 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37 D+E TGL + D IIEI V ++ Sbjct: 11 VDLEMTGLVPERDFIIEIATVVTDEH 36 >gi|297662820|ref|XP_002809887.1| PREDICTED: protein maelstrom homolog [Pongo abelii] Length = 434 Score = 37.2 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 12/96 (12%), Positives = 19/96 (19%), Gaps = 2/96 (2%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 EIG V+ F F+ P K + P + Sbjct: 137 CEIGCVKYSLQEGIMADFHSFINPG--KIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 194 Query: 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + +I N R + Sbjct: 195 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 230 >gi|28872064|ref|NP_794683.1| oligoribonuclease [Pseudomonas syringae pv. tomato str. DC3000] gi|213967916|ref|ZP_03396062.1| oligoribonuclease [Pseudomonas syringae pv. tomato T1] gi|301384436|ref|ZP_07232854.1| oligoribonuclease [Pseudomonas syringae pv. tomato Max13] gi|302132276|ref|ZP_07258266.1| oligoribonuclease [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999378|sp|Q87VI6|ORN_PSESM RecName: Full=Oligoribonuclease gi|28855317|gb|AAO58378.1| oligoribonuclease [Pseudomonas syringae pv. tomato str. DC3000] gi|213927259|gb|EEB60808.1| oligoribonuclease [Pseudomonas syringae pv. tomato T1] gi|331014602|gb|EGH94658.1| oligoribonuclease [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 178 Score = 37.2 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 16/27 (59%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +NK I D+E TGLD D IIE+ Sbjct: 2 QNKQNLIWIDLEMTGLDPDTDVIIEMA 28 >gi|89094643|ref|ZP_01167580.1| oligoribonuclease [Oceanospirillum sp. MED92] gi|89081113|gb|EAR60348.1| oligoribonuclease [Oceanospirillum sp. MED92] Length = 186 Score = 37.2 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 12/19 (63%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ D IIEI Sbjct: 15 IDLEMTGLEPATDVIIEIA 33 >gi|320547520|ref|ZP_08041806.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus equinus ATCC 9812] gi|320447865|gb|EFW88622.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus equinus ATCC 9812] Length = 195 Score = 37.2 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%) Query: 9 KIVFDIETTGLD--SKNDRIIEIGAVELLDYSKTNRTFQVFL 48 I FD+E + ++ II++ AV+ D + +F ++ Sbjct: 7 YIAFDLE---FNTVAEVSHIIQVSAVKFKDGEEI-DSFDTYV 44 >gi|290474872|ref|YP_003467752.1| Exonuclease [Xenorhabdus bovienii SS-2004] gi|289174185|emb|CBJ80974.1| Exonuclease [Xenorhabdus bovienii SS-2004] Length = 186 Score = 37.2 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 13/182 (7%) Query: 7 MR----KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 MR I D+ET+G ++ IGA + + + P+ ++ PE+L + Sbjct: 1 MRKSEVYISVDVETSGPVPGVFSLLSIGACLV--HQAEVAIYLEL-QPDSPEHDPESLAV 57 Query: 63 HGITDEFLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 G+ L+ Q A ++ N FD FIN + Sbjct: 58 TGLDLMQLEQDGLPPSAAMHQFKVWIESVIDPGQKAIFVGLNTPFDWSFINYYFYKYVGI 117 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ID + + S ++ S + + H AL D+ ++++ M+ Sbjct: 118 NPFGFTAIDIKAYFMGAYGYSWSETKSSHMSAILKPCTKPNHNALEDARFQAELFALMLA 177 Query: 177 GG 178 Sbjct: 178 RQ 179 >gi|295836748|ref|ZP_06823681.1| oligoribonuclease [Streptomyces sp. SPB74] gi|197697620|gb|EDY44553.1| oligoribonuclease [Streptomyces sp. SPB74] Length = 198 Score = 37.2 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGR 53 R + D E TGL ND +IE+ A V + + + + P G Sbjct: 4 RMVWIDCEMTGLSLANDALIEVAALVTDSELNILGDGVDIVIRPPGE 50 >gi|15240840|ref|NP_196388.1| exonuclease family protein [Arabidopsis thaliana] gi|9759593|dbj|BAB11450.1| exonuclease-like protein [Arabidopsis thaliana] gi|332003813|gb|AED91196.1| exonuclease family protein [Arabidopsis thaliana] Length = 468 Score = 37.2 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 7/92 (7%) Query: 11 VFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCP-NGRKNSPEALKLHGIT 66 FD+ETT + + R I+E G++ + T R++ + P + S +++ +GI Sbjct: 11 FFDVETT-VPKRGQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLSVRCNGIK 69 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98 + + P F+ I +D + W HN Sbjct: 70 RDDVVLAPLFADIADTVYDILHG--RIWAGHN 99 >gi|325921108|ref|ZP_08182979.1| Exodeoxyribonuclease I subunit C [Xanthomonas gardneri ATCC 19865] gi|325548380|gb|EGD19363.1| Exodeoxyribonuclease I subunit C [Xanthomonas gardneri ATCC 19865] Length = 481 Score = 37.2 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 33/118 (27%), Gaps = 3/118 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65 + +D+ET G D + RI + AV ++ P + + Sbjct: 5 FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFYVQPADDLLPSPYATMVTGIT 64 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 L++ S + F+ + + + +N+ N Sbjct: 65 PQHALREGVSEAEAFARISEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122 >gi|71282475|ref|YP_271028.1| oligoribonuclease [Colwellia psychrerythraea 34H] gi|123630997|sp|Q47VZ4|ORN_COLP3 RecName: Full=Oligoribonuclease gi|71148215|gb|AAZ28688.1| oligoribonuclease [Colwellia psychrerythraea 34H] Length = 181 Score = 37.2 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 9/21 (42%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+ D I+EI + Sbjct: 11 LDLEMTGLEPVEDVILEIAII 31 >gi|325846496|ref|ZP_08169411.1| conserved domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481254|gb|EGC84295.1| conserved domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 303 Score = 36.8 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 17/36 (47%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44 + + DIETTGLD D ++ +G + + Sbjct: 17 ECILDIETTGLDPNTDSLVVLGLIYFNKDKFYIDQY 52 >gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium] Length = 916 Score = 36.8 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 13/164 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETT LD N I+ G V L+D +F V P G +L Sbjct: 342 VFDLETTSLDYMNAAIV--GWVFLVD----KDSFYV---PVGHDYLDAPKQLDFDDALLT 392 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ + + + ++ + + +D LS+ Sbjct: 393 LKPILQDESINKVGQNLKYDAHVLANYQIDLNGISDDTMVKSYVLNSVATRHNMDDLSMH 452 Query: 131 RRKHPSSRNDLNSLCKRYGITISH----RSKHGALLDSHLLSDV 170 H + + + IT + + A D + ++ Sbjct: 453 YLNHQTIHFSDVAGKGKKQITFNQVGLEAAFPYACEDVIVTHEL 496 >gi|302062272|ref|ZP_07253813.1| oligoribonuclease [Pseudomonas syringae pv. tomato K40] Length = 107 Score = 36.8 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 16/27 (59%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +NK I D+E TGLD D IIE+ Sbjct: 2 QNKQNLIWIDLEMTGLDPDTDVIIEMA 28 >gi|332284719|ref|YP_004416630.1| hypothetical protein PT7_1466 [Pusillimonas sp. T7-7] gi|330428672|gb|AEC20006.1| hypothetical protein PT7_1466 [Pusillimonas sp. T7-7] Length = 169 Score = 36.8 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 10/18 (55%), Positives = 13/18 (72%) Query: 15 ETTGLDSKNDRIIEIGAV 32 E TGLD + +RIIE+ V Sbjct: 2 EMTGLDPEKERIIEVAVV 19 >gi|332219429|ref|XP_003258858.1| PREDICTED: protein maelstrom homolog isoform 2 [Nomascus leucogenys] Length = 403 Score = 36.8 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 EIG V+ F F+ P + + P + Sbjct: 106 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 163 Query: 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + +I N R + Sbjct: 164 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 199 >gi|194379278|dbj|BAG63605.1| unnamed protein product [Homo sapiens] gi|315570461|gb|ADU33235.1| maelstrom isoform 2 [Homo sapiens] Length = 403 Score = 36.8 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 EIG V+ F F+ P + + P + Sbjct: 106 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 163 Query: 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + +I N R + Sbjct: 164 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 199 >gi|162147891|ref|YP_001602352.1| exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl 5] gi|209542508|ref|YP_002274737.1| Exonuclease RNase T and DNA polymerase III [Gluconacetobacter diazotrophicus PAl 5] gi|161786468|emb|CAP56050.1| putative exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl 5] gi|209530185|gb|ACI50122.1| Exonuclease RNase T and DNA polymerase III [Gluconacetobacter diazotrophicus PAl 5] Length = 269 Score = 36.8 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 46/172 (26%), Gaps = 9/172 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHGITDE 68 V D+ET+G ++ + I+EIG ++ T+ + P R P Sbjct: 18 VIDLETSGRNAADGGIVEIGWQDV-ARDADG-TWALAGPPGARLTHPGGPITPQTMAIHH 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + F+E A A + I T Sbjct: 76 ITDAHVRDAPPFAEIAPDILHPADRPAAMAAHRASFEQGWIRGSLPPALTTGLHWICTYK 135 Query: 129 IARRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175 A R P N + H A D+++ + M+ Sbjct: 136 CALRLWPDEPGHSNQGLRHSRRPAGLERALGDPPHRAGPDAYVTAHHLRDML 187 >gi|256821737|ref|YP_003145700.1| Exonuclease RNase T and DNA polymerase III [Kangiella koreensis DSM 16069] gi|256795276|gb|ACV25932.1| Exonuclease RNase T and DNA polymerase III [Kangiella koreensis DSM 16069] Length = 182 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 17/29 (58%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + KN I D+E TGLD + D +IEI Sbjct: 1 MTKNDDNLIWVDLEMTGLDPETDVVIEIA 29 >gi|6453516|emb|CAB61396.1| hypothetical protein [Homo sapiens] Length = 376 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 EIG V+ F F+ P + + P + Sbjct: 79 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 136 Query: 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + +I N R + Sbjct: 137 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 172 >gi|15609648|ref|NP_217027.1| oligoribonuclease [Mycobacterium tuberculosis H37Rv] gi|15842039|ref|NP_337076.1| oligoribonuclease [Mycobacterium tuberculosis CDC1551] gi|31793691|ref|NP_856184.1| oligoribonuclease [Mycobacterium bovis AF2122/97] gi|121638393|ref|YP_978617.1| oligoribonuclease [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662347|ref|YP_001283870.1| oligoribonuclease [Mycobacterium tuberculosis H37Ra] gi|148823708|ref|YP_001288462.1| oligoribonuclease [Mycobacterium tuberculosis F11] gi|167966612|ref|ZP_02548889.1| oligoribonuclease [Mycobacterium tuberculosis H37Ra] gi|215404448|ref|ZP_03416629.1| oligoribonuclease [Mycobacterium tuberculosis 02_1987] gi|215412277|ref|ZP_03421037.1| oligoribonuclease [Mycobacterium tuberculosis 94_M4241A] gi|215427894|ref|ZP_03425813.1| oligoribonuclease [Mycobacterium tuberculosis T92] gi|215431457|ref|ZP_03429376.1| oligoribonuclease [Mycobacterium tuberculosis EAS054] gi|215446761|ref|ZP_03433513.1| oligoribonuclease [Mycobacterium tuberculosis T85] gi|218754244|ref|ZP_03533040.1| oligoribonuclease [Mycobacterium tuberculosis GM 1503] gi|219558511|ref|ZP_03537587.1| oligoribonuclease [Mycobacterium tuberculosis T17] gi|224990887|ref|YP_002645574.1| oligoribonuclease [Mycobacterium bovis BCG str. Tokyo 172] gi|253798409|ref|YP_003031410.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 1435] gi|254232640|ref|ZP_04925967.1| oligoribonuclease orn [Mycobacterium tuberculosis C] gi|254366813|ref|ZP_04982855.1| oligoribonuclease orn [Mycobacterium tuberculosis str. Haarlem] gi|254551558|ref|ZP_05142005.1| oligoribonuclease [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187518|ref|ZP_05764992.1| oligoribonuclease [Mycobacterium tuberculosis CPHL_A] gi|260201636|ref|ZP_05769127.1| oligoribonuclease [Mycobacterium tuberculosis T46] gi|260205826|ref|ZP_05773317.1| oligoribonuclease [Mycobacterium tuberculosis K85] gi|289444042|ref|ZP_06433786.1| oligoribonuclease orn [Mycobacterium tuberculosis T46] gi|289448156|ref|ZP_06437900.1| oligoribonuclease orn [Mycobacterium tuberculosis CPHL_A] gi|289553697|ref|ZP_06442907.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 605] gi|289570671|ref|ZP_06450898.1| oligoribonuclease orn [Mycobacterium tuberculosis T17] gi|289575216|ref|ZP_06455443.1| oligoribonuclease orn [Mycobacterium tuberculosis K85] gi|289746293|ref|ZP_06505671.1| oligoribonuclease [Mycobacterium tuberculosis 02_1987] gi|289751120|ref|ZP_06510498.1| oligoribonuclease orn [Mycobacterium tuberculosis T92] gi|289754620|ref|ZP_06513998.1| oligoribonuclease orn [Mycobacterium tuberculosis EAS054] gi|289758643|ref|ZP_06518021.1| oligoribonuclease orn [Mycobacterium tuberculosis T85] gi|289762679|ref|ZP_06522057.1| oligoribonuclease orn [Mycobacterium tuberculosis GM 1503] gi|294994382|ref|ZP_06800073.1| oligoribonuclease [Mycobacterium tuberculosis 210] gi|297635119|ref|ZP_06952899.1| oligoribonuclease [Mycobacterium tuberculosis KZN 4207] gi|297732110|ref|ZP_06961228.1| oligoribonuclease [Mycobacterium tuberculosis KZN R506] gi|298525983|ref|ZP_07013392.1| oligoribonuclease orn [Mycobacterium tuberculosis 94_M4241A] gi|306776784|ref|ZP_07415121.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu001] gi|306780550|ref|ZP_07418887.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu002] gi|306785311|ref|ZP_07423633.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu003] gi|306789665|ref|ZP_07427987.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu004] gi|306793992|ref|ZP_07432294.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu005] gi|306798387|ref|ZP_07436689.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu006] gi|306804267|ref|ZP_07440935.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu008] gi|306807692|ref|ZP_07444360.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu007] gi|306968664|ref|ZP_07481325.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu009] gi|306972895|ref|ZP_07485556.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu010] gi|307080608|ref|ZP_07489778.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu011] gi|307085195|ref|ZP_07494308.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu012] gi|313659444|ref|ZP_07816324.1| oligoribonuclease [Mycobacterium tuberculosis KZN V2475] gi|54038785|sp|P65598|ORN_MYCBO RecName: Full=Oligoribonuclease gi|54041582|sp|P65597|ORN_MYCTU RecName: Full=Oligoribonuclease gi|166216268|sp|A1KLK6|ORN_MYCBP RecName: Full=Oligoribonuclease gi|166216271|sp|A5U5K8|ORN_MYCTA RecName: Full=Oligoribonuclease gi|3261780|emb|CAB08931.1| OLIGORIBONUCLEASE ORN [Mycobacterium tuberculosis H37Rv] gi|13882317|gb|AAK46890.1| oligoribonuclease, putative [Mycobacterium tuberculosis CDC1551] gi|31619284|emb|CAD97400.1| PROBABLE OLIGORIBONUCLEASE ORN [Mycobacterium bovis AF2122/97] gi|121494041|emb|CAL72519.1| Probable oligoribonuclease orn [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601699|gb|EAY60709.1| oligoribonuclease orn [Mycobacterium tuberculosis C] gi|134152323|gb|EBA44368.1| oligoribonuclease orn [Mycobacterium tuberculosis str. Haarlem] gi|148506499|gb|ABQ74308.1| oligoribonuclease [Mycobacterium tuberculosis H37Ra] gi|148722235|gb|ABR06860.1| oligoribonuclease orn [Mycobacterium tuberculosis F11] gi|224774000|dbj|BAH26806.1| oligoribonuclease [Mycobacterium bovis BCG str. Tokyo 172] gi|253319912|gb|ACT24515.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 1435] gi|289416961|gb|EFD14201.1| oligoribonuclease orn [Mycobacterium tuberculosis T46] gi|289421114|gb|EFD18315.1| oligoribonuclease orn [Mycobacterium tuberculosis CPHL_A] gi|289438329|gb|EFD20822.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 605] gi|289539647|gb|EFD44225.1| oligoribonuclease orn [Mycobacterium tuberculosis K85] gi|289544425|gb|EFD48073.1| oligoribonuclease orn [Mycobacterium tuberculosis T17] gi|289686821|gb|EFD54309.1| oligoribonuclease [Mycobacterium tuberculosis 02_1987] gi|289691707|gb|EFD59136.1| oligoribonuclease orn [Mycobacterium tuberculosis T92] gi|289695207|gb|EFD62636.1| oligoribonuclease orn [Mycobacterium tuberculosis EAS054] gi|289710185|gb|EFD74201.1| oligoribonuclease orn [Mycobacterium tuberculosis GM 1503] gi|289714207|gb|EFD78219.1| oligoribonuclease orn [Mycobacterium tuberculosis T85] gi|298495777|gb|EFI31071.1| oligoribonuclease orn [Mycobacterium tuberculosis 94_M4241A] gi|308214844|gb|EFO74243.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu001] gi|308326616|gb|EFP15467.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu002] gi|308330038|gb|EFP18889.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu003] gi|308333882|gb|EFP22733.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu004] gi|308337682|gb|EFP26533.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu005] gi|308341363|gb|EFP30214.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu006] gi|308345880|gb|EFP34731.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu007] gi|308349155|gb|EFP38006.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu008] gi|308353779|gb|EFP42630.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu009] gi|308357722|gb|EFP46573.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu010] gi|308361662|gb|EFP50513.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu011] gi|308365253|gb|EFP54104.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu012] gi|323718919|gb|EGB28073.1| oligoribonuclease orn [Mycobacterium tuberculosis CDC1551A] gi|326904125|gb|EGE51058.1| oligoribonuclease orn [Mycobacterium tuberculosis W-148] gi|328458177|gb|AEB03600.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 4207] Length = 215 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D E TGLD +D++IEI A+ Sbjct: 8 IDCEMTGLDLGSDKLIEIAAL 28 >gi|302529267|ref|ZP_07281609.1| oligoribonuclease [Streptomyces sp. AA4] gi|302438162|gb|EFL09978.1| oligoribonuclease [Streptomyces sp. AA4] Length = 202 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D E TGLD D +IEI A+ Sbjct: 8 IDCEMTGLDLGKDALIEIAAL 28 >gi|318606038|emb|CBY27536.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica Y11] Length = 220 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 73/190 (38%), Gaps = 20/190 (10%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D ET GL I+EI +++++D + + + P+ R S +A+ +H IT Sbjct: 1 MYFRVIDTETCGL---EGGIVEIASIDVMDGALS-NPMSDLVSPD-RPISLDAMVIHHIT 55 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E ++ KP + ++ + ++AHNA FD G + + I T Sbjct: 56 EEMVEGKPRIAVAVRKYQ-----GSPYYVAHNAPFDRGVLPE----------MGGQWICT 100 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +AR +P ++ L + +S + + + + Sbjct: 101 LKLARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIMRDSGWSAE 160 Query: 187 TNEDRFFKEE 196 + + + Sbjct: 161 QMAEITRQPQ 170 >gi|289426608|ref|ZP_06428341.1| conserved hypothetical protein [Propionibacterium acnes J165] gi|289160196|gb|EFD08367.1| conserved hypothetical protein [Propionibacterium acnes J165] gi|314980623|gb|EFT24717.1| conserved domain protein [Propionibacterium acnes HL072PA2] gi|315089857|gb|EFT61833.1| conserved domain protein [Propionibacterium acnes HL072PA1] gi|327452668|gb|EGE99322.1| conserved domain protein [Propionibacterium acnes HL087PA3] Length = 118 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 3/23 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV 32 ++ D ETT LD RIIEI + Sbjct: 17 VILDTETTDLD---GRIIEISII 36 >gi|119611188|gb|EAW90782.1| maelstrom homolog (Drosophila), isoform CRA_c [Homo sapiens] gi|315570463|gb|ADU33236.1| maelstrom isoform 3 [Homo sapiens] Length = 378 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 EIG V+ F F+ P + + P + Sbjct: 81 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 138 Query: 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + +I N R + Sbjct: 139 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 174 >gi|91093385|ref|XP_971552.1| PREDICTED: similar to AGAP012804-PA [Tribolium castaneum] gi|270015360|gb|EFA11808.1| hypothetical protein TcasGA2_TC008587 [Tribolium castaneum] Length = 211 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 5/65 (7%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + D+E TGLD D+I+E+ + P+ + P+ + Sbjct: 35 RVVWVDMEMTGLDVATDKIMEVACIITDGDLNIIAE-----GPDLIIHHPQNILDKMNEW 89 Query: 68 EFLKD 72 Sbjct: 90 CKTHH 94 >gi|302189797|ref|ZP_07266470.1| oligoribonuclease [Pseudomonas syringae pv. syringae 642] Length = 178 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 16/27 (59%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +NK I D+E TGLD D IIE+ Sbjct: 2 QNKQNLIWIDLEMTGLDPDTDVIIEMA 28 >gi|269469132|gb|EEZ80677.1| oligoribonuclease [uncultured SUP05 cluster bacterium] Length = 180 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL + D IIEI V Sbjct: 10 IDLEMTGLIPEKDVIIEIATV 30 >gi|332219427|ref|XP_003258857.1| PREDICTED: protein maelstrom homolog isoform 1 [Nomascus leucogenys] Length = 434 Score = 36.8 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 EIG V+ F F+ P + + P + Sbjct: 137 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 194 Query: 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + +I N R + Sbjct: 195 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 230 >gi|332162002|ref|YP_004298579.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666232|gb|ADZ42876.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 220 Score = 36.8 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 73/190 (38%), Gaps = 20/190 (10%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D ET GL I+EI +++++D + + + P+ R S +A+ +H IT Sbjct: 1 MYFRVIDTETCGL---EGGIVEIASIDVMDGALS-NPMSDLVSPD-RPISLDAMVIHHIT 55 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E ++ KP + ++ + ++AHNA FD G + + I T Sbjct: 56 EEMVEGKPRIAVAVRKYQ-----GSPYYVAHNAPFDRGVLPE----------MGGQWICT 100 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +AR +P ++ L + +S + + + + Sbjct: 101 LKLARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIMRDSGWSAE 160 Query: 187 TNEDRFFKEE 196 + + + Sbjct: 161 QMAEITRQPQ 170 >gi|293190188|ref|ZP_06608684.1| putative DNA polymerase III epsilon subunit [Actinomyces odontolyticus F0309] gi|292821004|gb|EFF79957.1| putative DNA polymerase III epsilon subunit [Actinomyces odontolyticus F0309] Length = 250 Score = 36.8 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 15/26 (57%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY 37 FD ETTG+ + DR++ V +D Sbjct: 11 FDTETTGVRALKDRLVTAALVLRIDG 36 >gi|109019354|ref|XP_001087413.1| PREDICTED: protein maelstrom homolog [Macaca mulatta] gi|75076632|sp|Q4R786|MAEL_MACFA RecName: Full=Protein maelstrom homolog gi|67969368|dbj|BAE01036.1| unnamed protein product [Macaca fascicularis] Length = 434 Score = 36.8 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 EIG V+ F F+ P + + P + Sbjct: 137 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 194 Query: 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + +I N R + Sbjct: 195 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 230 >gi|257056841|ref|YP_003134673.1| oligoribonuclease (3'->5' exoribonuclease) [Saccharomonospora viridis DSM 43017] gi|256586713|gb|ACU97846.1| oligoribonuclease (3'->5' exoribonuclease) [Saccharomonospora viridis DSM 43017] Length = 202 Score = 36.8 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D E TGLD D +IEI + Sbjct: 4 RLVWIDCEMTGLDLAKDALIEIAVL 28 >gi|70999440|ref|XP_754439.1| RNA exonuclease Rex2 [Aspergillus fumigatus Af293] gi|66852076|gb|EAL92401.1| RNA exonuclease Rex2, putative [Aspergillus fumigatus Af293] gi|159127455|gb|EDP52570.1| RNA exonuclease Rex2, putative [Aspergillus fumigatus A1163] Length = 250 Score = 36.8 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 2/57 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGL+ + D I++I F+ + + + Sbjct: 73 IDCEMTGLNPETDTILQICCYITDANLNLLDPEGFETIIHHDRSVLDSMSPWCVDTH 129 >gi|330939856|gb|EGH43089.1| oligoribonuclease [Pseudomonas syringae pv. pisi str. 1704B] gi|330978958|gb|EGH78017.1| oligoribonuclease [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 178 Score = 36.8 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 16/27 (59%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +NK I D+E TGLD D IIE+ Sbjct: 2 QNKQNLIWIDLEMTGLDPDTDVIIEMA 28 >gi|259908234|ref|YP_002648590.1| exodeoxyribonuclease X [Erwinia pyrifoliae Ep1/96] gi|224963856|emb|CAX55358.1| DNA exonuclease X [Erwinia pyrifoliae Ep1/96] gi|283478165|emb|CAY74081.1| exodeoxyribonuclease X [Erwinia pyrifoliae DSM 12163] Length = 221 Score = 36.8 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 67/174 (38%), Gaps = 20/174 (11%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL ++E+ +V+++ + P+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCGL---QGGVVEVASVDVISGQIL-NPMSDLISPD-RPISRQAMAVHKITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP+ + + ++AHNA FD + I T+++A Sbjct: 59 RGKPAIEQAIGRYH-----GSPFYVAHNASFDRRMLPE----------MHGDWICTMTLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 RR P + +L + + +S + A + +M S + Sbjct: 104 RRLWPGLKYTNEALRQSLQLEVSPPADLHAHRALYDCYVTAALLMRIMSFSGWD 157 >gi|332811144|ref|XP_003308636.1| PREDICTED: protein maelstrom homolog isoform 1 [Pan troglodytes] Length = 378 Score = 36.8 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 EIG V+ F F+ P + + P + Sbjct: 81 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 138 Query: 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + +I N R + Sbjct: 139 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 174 >gi|323450230|gb|EGB06112.1| hypothetical protein AURANDRAFT_65802 [Aureococcus anophagefferens] Length = 1190 Score = 36.8 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 4/79 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDE 68 I +D+ETT ++++ + + ++ FQ + P G A+ + Sbjct: 44 IAYDLETTSAWPATAEVVQLAFTNVAN---SDEHFQALVLPEGGVDGGAAAVHGYTKASL 100 Query: 69 FLKDKPSFSSIFSEFWDFF 87 K F + D+ Sbjct: 101 KKKRALPFDVAWGMARDWL 119 >gi|255325307|ref|ZP_05366413.1| DNA polymerase III epsilon subunit [Corynebacterium tuberculostearicum SK141] gi|255297872|gb|EET77183.1| DNA polymerase III epsilon subunit [Corynebacterium tuberculostearicum SK141] Length = 443 Score = 36.8 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 5/93 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ET + I +IGAV + +T+ R++ P + + +HGIT + Sbjct: 102 AVDVET--ANDNWGSICQIGAVRFREGQETDSRSWLCTPPPGIEHFADINVSIHGITADD 159 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 +K P+F + E +DF +AHNA+FD Sbjct: 160 VKGAPAFVEVSKELFDFLGG--DVLVAHNAQFD 190 >gi|62390951|ref|YP_226353.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease [Corynebacterium glutamicum ATCC 13032] gi|41326290|emb|CAF20452.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease [Corynebacterium glutamicum ATCC 13032] Length = 476 Score = 36.8 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 7/151 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEALKLHGI 65 + FD+ET + I +IG V+ +D + + P + + +HGI Sbjct: 123 NFVGFDVET--ANDDWGSICQIGLVKYVDGVEESSE-SWLCTPPESLNFFNEINIGIHGI 179 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E + D+P F+ + + +F + +AHNA+FD ++ D + Sbjct: 180 TPEMVADQPRFADLVPKMVEFVGD--LPLVAHNAQFDFTALSRACAASGIDVPEMIYGCS 237 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRS 156 K + L ++ G + + Sbjct: 238 LTLARNEKLQVENHKLPTVASHLGFELKNHH 268 >gi|23308895|ref|NP_601316.2| DNA polymerase III epsilon subunit [Corynebacterium glutamicum ATCC 13032] gi|21324886|dbj|BAB99509.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases [Corynebacterium glutamicum ATCC 13032] Length = 381 Score = 36.8 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 7/151 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEALKLHGI 65 + FD+ET + I +IG V+ +D + + P + + +HGI Sbjct: 28 NFVGFDVET--ANDDWGSICQIGLVKYVDGVEESSE-SWLCTPPESLNFFNEINIGIHGI 84 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E + D+P F+ + + +F + +AHNA+FD ++ D + Sbjct: 85 TPEMVADQPRFADLVPKMVEFVGD--LPLVAHNAQFDFTALSRACAASGIDVPEMIYGCS 142 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRS 156 K + L ++ G + + Sbjct: 143 LTLARNEKLQVENHKLPTVASHLGFELKNHH 173 >gi|300858286|ref|YP_003783269.1| hypothetical protein cpfrc_00868 [Corynebacterium pseudotuberculosis FRC41] gi|300685740|gb|ADK28662.1| hypothetical protein cpfrc_00868 [Corynebacterium pseudotuberculosis FRC41] gi|302206006|gb|ADL10348.1| DNA polymerase III subunit epsilon [Corynebacterium pseudotuberculosis C231] gi|302330559|gb|ADL20753.1| DNA polymerase III subunit epsilon [Corynebacterium pseudotuberculosis 1002] gi|308276241|gb|ADO26140.1| DNA polymerase III subunit epsilon [Corynebacterium pseudotuberculosis I19] Length = 232 Score = 36.8 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 8/24 (33%), Positives = 12/24 (50%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL 35 FD+ETT + RI+ V + Sbjct: 19 FDLETTSANPHEARIVSSALVRID 42 >gi|146302457|ref|YP_001197048.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium johnsoniae UW101] gi|146156875|gb|ABQ07729.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium johnsoniae UW101] Length = 181 Score = 36.8 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 56/176 (31%), Gaps = 6/176 (3%) Query: 8 RKIVFDIETT---GLDSKN--DRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + I+ D+E T G+ K + IIEIG AV + + + + P SP + Sbjct: 6 KIIIIDLEATCWQGVVPKGQQNEIIEIGLAVLDSQTGEITKNKGILIKPQRSTVSPFCTE 65 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L IT + L + A ++D+ + + + Sbjct: 66 LTTITQDLLDKNGVSFEEAVNLLIDEYNPDLYTWASYGQYDLNMLTKQCKSFGIPYPMGE 125 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 I+ K R+ + + + H + D+ ++ + + Sbjct: 126 EHINVKEHFAEKFGLKRSTGMNGALQLLNIPLEGTHHRGIDDAKNIAKIMHWCLKN 181 >gi|84387084|ref|ZP_00990106.1| hypothetical protein V12B01_03993 [Vibrio splendidus 12B01] gi|84377945|gb|EAP94806.1| hypothetical protein V12B01_03993 [Vibrio splendidus 12B01] Length = 176 Score = 36.8 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 61/184 (33%), Gaps = 22/184 (11%) Query: 5 NKMRKIVFDIE----------TTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVFLCPNG 52 N R + FD+E TTG IIEIG ++L+ + R Q ++ P Sbjct: 2 NHNRVVCFDLEMCCWSEDGVGTTG------EIIEIGLAEIDLVSGTIVKRA-QYYVKPEK 54 Query: 53 RKNSPEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 + S +L GIT ++ + S+ F + A + + Sbjct: 55 DEVSLFCAELTGITPRKIEKQGRPLESVIKSMIKNFGGPKKIYAAWGRDDLILHKECIEK 114 Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I + I + R + + +H +D++ L+ + Sbjct: 115 GIEPPFSEFLNIATLYRVQNRLKEKRIGHRAA--QEAKNIEWEGRQHSGYVDAYNLAKLA 172 Query: 172 IKMM 175 + M+ Sbjct: 173 LTML 176 >gi|296219054|ref|XP_002755711.1| PREDICTED: hypothetical protein LOC100392350 [Callithrix jacchus] Length = 878 Score = 36.8 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 8/117 (6%), Positives = 18/117 (15%) Query: 45 QVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 Q + P + T P + + N + H Sbjct: 437 QCYTHPQCNTHPQCYTHPQCYTQPQCYTHPQSYTHLQCYTHPHATPNPQCYTHPQCNTHP 496 Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 Q + +T + + + Sbjct: 497 QCYTHPQCYTQSQSYTHPQCNTHPQCYTHPQCYTQPQCYTHPQSYTHLQCYTHPQCY 553 >gi|169629793|ref|YP_001703442.1| hypothetical protein MAB_2709c [Mycobacterium abscessus ATCC 19977] gi|169241760|emb|CAM62788.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 182 Score = 36.8 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVE 33 M + D ETTGL + EI + Sbjct: 1 MALVFLDTETTGLHRER-EPWEIAIIR 26 >gi|149910187|ref|ZP_01898833.1| Oligoribonuclease [Moritella sp. PE36] gi|149806773|gb|EDM66737.1| Oligoribonuclease [Moritella sp. PE36] Length = 188 Score = 36.8 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 12/19 (63%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + IIEI Sbjct: 18 IDLEMTGLDPEKCLIIEIA 36 >gi|14249590|ref|NP_116247.1| protein maelstrom homolog [Homo sapiens] gi|74760900|sp|Q96JY0|MAEL_HUMAN RecName: Full=Protein maelstrom homolog gi|14042764|dbj|BAB55385.1| unnamed protein product [Homo sapiens] gi|20306906|gb|AAH28595.1| Maelstrom homolog (Drosophila) [Homo sapiens] gi|55661890|emb|CAH69956.1| maelstrom homolog (Drosophila) [Homo sapiens] gi|67866977|gb|AAY82463.1| maelstrom [Homo sapiens] gi|119611187|gb|EAW90781.1| maelstrom homolog (Drosophila), isoform CRA_b [Homo sapiens] gi|312151748|gb|ADQ32386.1| maelstrom homolog (Drosophila) [synthetic construct] Length = 434 Score = 36.8 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 EIG V+ F F+ P + + P + Sbjct: 137 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 194 Query: 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + +I N R + Sbjct: 195 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 230 >gi|323497417|ref|ZP_08102435.1| exonuclease I [Vibrio sinaloensis DSM 21326] gi|323317500|gb|EGA70493.1| exonuclease I [Vibrio sinaloensis DSM 21326] Length = 474 Score = 36.8 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 44/160 (27%), Gaps = 7/160 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 M ++++ FD ET G DR + V D++ ++ P Sbjct: 1 MQQEHQPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGDPLVIYCQPPSDYLPA-- 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 P + F + E +A ++G+ + Sbjct: 59 ----PEAALITGITPQTAQAQGLSEPEFIAKIHEQLAMPNTINLGYNSIRFDDEVTRYTC 114 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 ID + + + S + L+ + Y + Sbjct: 115 YRNFIDPYAWSWQNGNSRWDLLDVMRACYALRPEGVEWPE 154 >gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826] Length = 878 Score = 36.8 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 10/18 (55%), Positives = 15/18 (83%) Query: 10 IVFDIETTGLDSKNDRII 27 + FD ETTG+DSK+ +I+ Sbjct: 318 VAFDTETTGVDSKSAKIV 335 >gi|56707385|ref|YP_169281.1| oligoribonuclease [Francisella tularensis subsp. tularensis SCHU S4] gi|110669856|ref|YP_666413.1| oligoribonuclease [Francisella tularensis subsp. tularensis FSC198] gi|224456460|ref|ZP_03664933.1| oligoribonuclease [Francisella tularensis subsp. tularensis MA00-2987] gi|254370915|ref|ZP_04986920.1| oligoribonuclease [Francisella tularensis subsp. tularensis FSC033] gi|254874223|ref|ZP_05246933.1| oligoribonuclease [Francisella tularensis subsp. tularensis MA00-2987] gi|81820821|sp|Q5NI61|ORN_FRATT RecName: Full=Oligoribonuclease gi|123169637|sp|Q14JL3|ORN_FRAT1 RecName: Full=Oligoribonuclease gi|56603877|emb|CAG44861.1| Oligoribonuclease [Francisella tularensis subsp. tularensis SCHU S4] gi|110320189|emb|CAL08244.1| Oligoribonuclease [Francisella tularensis subsp. tularensis FSC198] gi|151569158|gb|EDN34812.1| oligoribonuclease [Francisella tularensis subsp. tularensis FSC033] gi|254840222|gb|EET18658.1| oligoribonuclease [Francisella tularensis subsp. tularensis MA00-2987] gi|282158524|gb|ADA77915.1| oligoribonuclease [Francisella tularensis subsp. tularensis NE061598] Length = 178 Score = 36.8 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +I EI A+ Sbjct: 10 IDLEMTGLDVDSCKITEIAAI 30 >gi|330873800|gb|EGH07949.1| oligoribonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 178 Score = 36.8 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 16/27 (59%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +NK I D+E TGLD D IIE+ Sbjct: 2 QNKQNLIWIDLEMTGLDPDTDVIIEMA 28 >gi|319443116|ref|ZP_07992272.1| oligoribonuclease [Corynebacterium variabile DSM 44702] Length = 209 Score = 36.8 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 14/25 (56%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D E TGLD+ ++EI V Sbjct: 11 RLVWVDCEMTGLDTSRHVLVEIAVV 35 >gi|49081684|gb|AAT50242.1| PA1575 [synthetic construct] Length = 184 Score = 36.8 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 10/115 (8%) Query: 9 KIVFDIE-TT--GLDS-KNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRK-NSPEAL 60 +V D+E TT G + IIEIGA + FQ F+ P R + Sbjct: 4 WLVIDLEATTAEGGWPLEEMEIIEIGATLVAAADAREL--DHFQRFVRPVRRPLLTHFCR 61 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 L I+ + ++++ F + + + D E + Sbjct: 62 DLTHISQANVDGAAHLNTVWEAFERWLAQHRPRLAGWASWGDYDRRQLEQEWRQH 116 >gi|330951466|gb|EGH51726.1| oligoribonuclease [Pseudomonas syringae Cit 7] Length = 178 Score = 36.8 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 16/27 (59%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +NK I D+E TGLD D IIE+ Sbjct: 2 QNKQNLIWIDLEMTGLDPDTDVIIEMA 28 >gi|237798271|ref|ZP_04586732.1| oligoribonuclease [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021123|gb|EGI01180.1| oligoribonuclease [Pseudomonas syringae pv. oryzae str. 1_6] Length = 178 Score = 36.8 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 16/27 (59%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +NK I D+E TGLD D IIE+ Sbjct: 2 QNKQNLIWIDLEMTGLDPDTDVIIEMA 28 >gi|119611186|gb|EAW90780.1| maelstrom homolog (Drosophila), isoform CRA_a [Homo sapiens] Length = 423 Score = 36.8 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 EIG V+ F F+ P + + P + Sbjct: 137 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 194 Query: 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + +I N R + Sbjct: 195 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 230 >gi|9630507|ref|NP_046936.1| gp41 [Enterobacteria phage N15] gi|3192726|gb|AAC19079.1| gp41 [Enterobacteria phage N15] Length = 304 Score = 36.8 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 28/164 (17%) Query: 1 MIRKNKMR--KIVFDIETTGL---------DSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 MI ++ +V D ETTGL N R G V L + Sbjct: 11 MIMHKWLKSDYVVIDTETTGLGEYAEIIEIAIINMR----GEVLLD----------TLVK 56 Query: 50 PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 P + PE +++ IT+E + P++ +F + ++ +W+A N+ FD + Sbjct: 57 P-TKPIPPEVTEINHITNEMVASAPAWCDVFPKVLAIISK--HKWLAWNSGFDARMLEQT 113 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS 153 + + +S H ++ ++ Y Sbjct: 114 CLNTIFLNKNAYYVTAMVSRIHTSHIDAKAVYDTWYGEYDAKHQ 157 >gi|332291323|ref|YP_004429932.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5] gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5] Length = 949 Score = 36.8 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 14/26 (53%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIG 30 NK + FD ETTGLD ++ I Sbjct: 374 NKQSSVCFDTETTGLDPLVAELVGIA 399 >gi|322781953|gb|EFZ10309.1| hypothetical protein SINV_07054 [Solenopsis invicta] Length = 640 Score = 36.8 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 7/41 (17%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50 ++ D+ET+G + D I++I A +F +++ P Sbjct: 372 VLLDLETSGFEMNCD-ILQIAA------KYGKNSFDIYVNP 405 >gi|226945876|ref|YP_002800949.1| exonuclease I [Azotobacter vinelandii DJ] gi|226720803|gb|ACO79974.1| Exodeoxyribonuclease I [Azotobacter vinelandii DJ] Length = 476 Score = 36.8 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 13 DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61 D ETTG++ + DR +++ + + ++ ++ P A Sbjct: 9 DYETTGINPRCDRPLQVAGIRTDEALNEIGAPLNLYCRPADDILPHPAAC 58 >gi|332811142|ref|XP_513969.3| PREDICTED: protein maelstrom homolog isoform 2 [Pan troglodytes] Length = 434 Score = 36.8 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 EIG V+ F F+ P + + P + Sbjct: 137 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 194 Query: 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + +I N R + Sbjct: 195 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 230 >gi|317483561|ref|ZP_07942543.1| hypothetical protein HMPREF0177_01939 [Bifidobacterium sp. 12_1_47BFAA] gi|316914987|gb|EFV36427.1| hypothetical protein HMPREF0177_01939 [Bifidobacterium sp. 12_1_47BFAA] Length = 197 Score = 36.8 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 11/18 (61%), Positives = 14/18 (77%) Query: 13 DIETTGLDSKNDRIIEIG 30 D+ETTGLD+ I+EIG Sbjct: 13 DVETTGLDTNKCSILEIG 30 >gi|329767022|ref|ZP_08258550.1| hypothetical protein HMPREF0428_00247 [Gemella haemolysans M341] gi|328837747|gb|EGF87372.1| hypothetical protein HMPREF0428_00247 [Gemella haemolysans M341] Length = 616 Score = 36.8 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 75/210 (35%), Gaps = 8/210 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIE T + II+ A +L K + ++ P ++ SP +L GI ++ L Sbjct: 7 VVDIELT----EEKEIIQFSATKLDQNFKEIESINYYIKPK-KQVSPFVTELTGINNDML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +K F + E +DF E + + I + +DT+ +A Sbjct: 62 SEKLYFEDVAKELYDFIKEDILVCHGLPSDYV---ILKKRFHDVGIRYHAKMSLDTVELA 118 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R P+ + S S H A +D + ++ ++ + IN + Sbjct: 119 RLFMPTQESYRLSDLSNSLALYSGDGYHNAAIDVQVTVELLKEISKRIANINSNNFKKIE 178 Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 ++ S + +I KE+ Sbjct: 179 VLLEKIDYNTLKFSRYCKRIIRGKKIKKED 208 >gi|329947400|ref|ZP_08294604.1| oligoribonuclease [Actinomyces sp. oral taxon 170 str. F0386] gi|328525150|gb|EGF52201.1| oligoribonuclease [Actinomyces sp. oral taxon 170 str. F0386] Length = 203 Score = 36.8 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPN 51 D E TGLD D +IE+ V V + P Sbjct: 10 IDCEMTGLDLSADALIEVAVVVTDYELAPLAEGIDVLIKPP 50 >gi|322688631|ref|YP_004208365.1| hypothetical protein BLIF_0443 [Bifidobacterium longum subsp. infantis 157F] gi|320459967|dbj|BAJ70587.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 493 Score = 36.8 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 DIETTG+D D II++G Sbjct: 264 IDIETTGIDPARDYIIDVG 282 >gi|322690617|ref|YP_004220187.1| hypothetical protein BLLJ_0426 [Bifidobacterium longum subsp. longum JCM 1217] gi|320455473|dbj|BAJ66095.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 493 Score = 36.8 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 DIETTG+D D II++G Sbjct: 264 IDIETTGIDPARDYIIDVG 282 >gi|312133212|ref|YP_004000551.1| dnaq [Bifidobacterium longum subsp. longum BBMN68] gi|317482559|ref|ZP_07941574.1| dnaQ protein [Bifidobacterium sp. 12_1_47BFAA] gi|311772413|gb|ADQ01901.1| DnaQ [Bifidobacterium longum subsp. longum BBMN68] gi|316915981|gb|EFV37388.1| dnaQ protein [Bifidobacterium sp. 12_1_47BFAA] Length = 493 Score = 36.8 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 DIETTG+D D II++G Sbjct: 264 IDIETTGIDPARDYIIDVG 282 >gi|296453663|ref|YP_003660806.1| hypothetical protein BLJ_0499 [Bifidobacterium longum subsp. longum JDM301] gi|296183094|gb|ADG99975.1| hypothetical protein BLJ_0499 [Bifidobacterium longum subsp. longum JDM301] Length = 472 Score = 36.8 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 DIETTG+D D II++G Sbjct: 244 IDIETTGIDPARDYIIDVG 262 >gi|227546364|ref|ZP_03976413.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213345|gb|EEI81217.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 493 Score = 36.8 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 DIETTG+D D II++G Sbjct: 264 IDIETTGIDPARDYIIDVG 282 >gi|239622366|ref|ZP_04665397.1| DNA polymerase III [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514363|gb|EEQ54230.1| DNA polymerase III [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 493 Score = 36.8 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 DIETTG+D D II++G Sbjct: 264 IDIETTGIDPARDYIIDVG 282 >gi|213692888|ref|YP_002323474.1| hypothetical protein Blon_2029 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524349|gb|ACJ53096.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459063|dbj|BAJ69684.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 492 Score = 36.8 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 DIETTG+D D II++G Sbjct: 264 IDIETTGIDPARDYIIDVG 282 >gi|91217110|ref|ZP_01254072.1| hypothetical protein P700755_03918 [Psychroflexus torquis ATCC 700755] gi|91184710|gb|EAS71091.1| hypothetical protein P700755_03918 [Psychroflexus torquis ATCC 700755] Length = 424 Score = 36.8 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 54/178 (30%), Gaps = 13/178 (7%) Query: 9 KIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 ++ DIET+GL K II+I V + + + + K + + + Sbjct: 242 YLIVDIETSGLPQKTANGTNYPEIIQIAWVVTNKKGLVLKKNSIIIETDFIKENNYSSIV 301 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---- 118 + + K + + + ++HN FD+ + ++ Sbjct: 302 NIDFEVARKVMFPLQHALKKLTEDIKICDYV-VSHNTDFDLSILGHYYTKLYGINPLSRK 360 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGALLDSHLLSDVYIKM 174 + + + L + Y ++ H A +D + K+ Sbjct: 361 ATICTMKSTVNYCKIPNKFGYKFPKLSELYNKLFDYEVKNSHNAEIDVLHTLKCFKKL 418 >gi|254480996|ref|ZP_05094242.1| exonuclease superfamily protein [marine gamma proteobacterium HTCC2148] gi|41582287|gb|AAS07901.1| oligoribonuclease [uncultured marine bacterium 463] gi|214038791|gb|EEB79452.1| exonuclease superfamily protein [marine gamma proteobacterium HTCC2148] Length = 182 Score = 36.8 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 12/19 (63%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD D +IEI Sbjct: 10 VDLEMTGLDPDEDVVIEIA 28 >gi|23465751|ref|NP_696354.1| hypothetical protein BL1185 [Bifidobacterium longum NCC2705] gi|23326437|gb|AAN24990.1| hypothetical protein BL1185 [Bifidobacterium longum NCC2705] Length = 493 Score = 36.8 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 DIETTG+D D II++G Sbjct: 264 IDIETTGIDPARDYIIDVG 282 >gi|23335363|ref|ZP_00120600.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Bifidobacterium longum DJO10A] gi|189439806|ref|YP_001954887.1| DNA polymerase III subunit epsilon [Bifidobacterium longum DJO10A] gi|189428241|gb|ACD98389.1| DNA polymerase III epsilon subunit [Bifidobacterium longum DJO10A] gi|291517273|emb|CBK70889.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Bifidobacterium longum subsp. longum F8] Length = 493 Score = 36.8 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 DIETTG+D D II++G Sbjct: 264 IDIETTGIDPARDYIIDVG 282 >gi|327268728|ref|XP_003219148.1| PREDICTED: protein maelstrom homolog [Anolis carolinensis] Length = 349 Score = 36.8 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 8/99 (8%), Positives = 17/99 (17%), Gaps = 2/99 (2%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 EIG ++ F F+ P + + P Sbjct: 131 CEIGCIKYSLKKGIIAEFHRFIDPG--EVPRGFRFHCQAAADATHKIPISGLDLPATDRS 188 Query: 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 I + + + + Sbjct: 189 VLLCELYSFIQPCWGTWPLIYCKSDDHYRVNWCLKHMAE 227 >gi|209883609|ref|YP_002287466.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5] gi|209871805|gb|ACI91601.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5] Length = 204 Score = 36.8 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 3/34 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT 43 + D ET GL+ DR+ V+L + T Sbjct: 20 VAIDTETLGLNPHRDRLC---VVQLSNGDGTADV 50 >gi|257482419|ref|ZP_05636460.1| oligoribonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289623748|ref|ZP_06456702.1| oligoribonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648635|ref|ZP_06479978.1| oligoribonuclease [Pseudomonas syringae pv. aesculi str. 2250] gi|330865886|gb|EGH00595.1| oligoribonuclease [Pseudomonas syringae pv. aesculi str. 0893_23] gi|331009756|gb|EGH89812.1| oligoribonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 178 Score = 36.8 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 16/27 (59%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +NK I D+E TGLD D IIE+ Sbjct: 2 QNKQNLIWIDLEMTGLDPDTDVIIEMA 28 >gi|197120640|ref|YP_002132591.1| hypothetical protein AnaeK_0220 [Anaeromyxobacter sp. K] gi|196170489|gb|ACG71462.1| conserved hypothetical protein [Anaeromyxobacter sp. K] Length = 172 Score = 36.8 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 42/171 (24%), Gaps = 5/171 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE---ALKLH 63 M V D+E G ++ GAV + +RTF+ + P PE + Sbjct: 1 MSAYVVDVEADGPIPGKYSMVSFGAVRVEPG--LSRTFRGEVRPISDLWLPEALAISAVT 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + + F + + + N FD ++N Sbjct: 59 REQHLRFGEPGEVMAAFERWIQETTKGKPVLFSDNLSFDWQWMNWYFHTYLGRNPFGWSG 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L L D+ +K+ Sbjct: 119 RRIGDLYCGMVKDGHAQWKHLRPTAHDHDPVNDAKANAGVLLQLVDMGLKL 169 >gi|332669891|ref|YP_004452899.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC 484] gi|332338929|gb|AEE45512.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC 484] Length = 223 Score = 36.8 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 15/25 (60%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D E TGLD D ++E+ AV Sbjct: 19 RIVWIDCEMTGLDLGADALVEVAAV 43 >gi|241573853|ref|XP_002403219.1| three prime repair exonuclease, putative [Ixodes scapularis] gi|215500196|gb|EEC09690.1| three prime repair exonuclease, putative [Ixodes scapularis] Length = 192 Score = 36.8 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 11/67 (16%) Query: 10 IVFDIETTGLDSKNDR--IIEIGAVELL------DYSKTNRTFQVF---LCPNGRKNSPE 58 + FD+ETT L R I E+ V + T R + P Sbjct: 11 VFFDLETTSLPRAGQRVGITELALVAVDRAHFEKQAKPTFRVLNKLTLCIRPEVYLEPMA 70 Query: 59 ALKLHGI 65 A K Sbjct: 71 AQKSGMS 77 >gi|152993185|ref|YP_001358906.1| exonuclease [Sulfurovum sp. NBC37-1] gi|151425046|dbj|BAF72549.1| exonuclease [Sulfurovum sp. NBC37-1] Length = 263 Score = 36.8 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 2/98 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+E+TG+D KNDR+I++ +++ F + N + Sbjct: 7 FVDVESTGVDLKNDRLIQLAFLKVQGDKI--EAFNDLCYTDIEMNDTVVAIHNITNAMLE 64 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 + + + N +IAH + DV + Sbjct: 65 DKYWPYETDAFIELEKGNSPANYFIAHGNELDVAMLEH 102 >gi|323491335|ref|ZP_08096520.1| exonuclease I [Vibrio brasiliensis LMG 20546] gi|323314461|gb|EGA67540.1| exonuclease I [Vibrio brasiliensis LMG 20546] Length = 474 Score = 36.8 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 16/126 (12%), Positives = 31/126 (24%), Gaps = 3/126 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 M ++++ FD ET G DR + V D++ ++ P Sbjct: 1 MQQEHQPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPAPE 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSE--FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 L + S + N + +N+ + N Sbjct: 61 AALITGITPQTAESKGLSEPEFIAKIHEQLAMPNTISLGYNSIRFDDEVTRYTCYRNFID 120 Query: 118 LDPSRI 123 Sbjct: 121 PYAWSW 126 >gi|170751505|ref|YP_001757765.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831] gi|170658027|gb|ACB27082.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831] Length = 207 Score = 36.8 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 11/20 (55%) Query: 8 RKIVFDIETTGLDSKNDRII 27 R + D ET GL+ DR+ Sbjct: 21 RAVAIDTETLGLNPHRDRLC 40 >gi|170718052|ref|YP_001785090.1| ribonuclease T [Haemophilus somnus 2336] gi|168826181|gb|ACA31552.1| ribonuclease T [Haemophilus somnus 2336] Length = 218 Score = 36.8 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 65/193 (33%), Gaps = 27/193 (13%) Query: 10 IVFDIETTGLDSKND----------RIIEIGAVELLDYSKT-NRTFQVFLCP-NGRKNSP 57 ++ D+ET G +++ D ++ + + + P G +P Sbjct: 24 VIIDVETAGFNAQTDALLELAALTLKM-------DENGLLVPDEKCHFHIQPFEGANINP 76 Query: 58 EALKLHGITDEFL--------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 E+LK +GI + + + Q + +AHNA FD F+ A Sbjct: 77 ESLKFNGIDIDNPLRGAISENVAMSELFKMVRHGQKKADCQRSVIVAHNATFDQSFVMAA 136 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 +R + + L C+ I+ + H AL D+ ++ Sbjct: 137 AERTKIKRNPFHPFSIFDTATLSGFMFGQTVLVKGCQVANISFDGKKAHSALYDAERTAE 196 Query: 170 VYIKMMVGGSQIN 182 ++ M+ ++ Sbjct: 197 LFCYMVNHLKKLG 209 >gi|319408044|emb|CBI81698.1| Ribonuclease D [Bartonella schoenbuchensis R1] Length = 206 Score = 36.4 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 22/59 (37%) Query: 10 IVFDIETTGLDSKNDR--------------IIEIG--------AVELLDYSKTNRTFQV 46 I D ET GL DR II+I V+LL+ + F Sbjct: 22 IAVDTETLGLQPYRDRLCVVQLSSGDGTADIIQIAKGQNSAPNLVKLLEDKAITKIFHF 80 >gi|312140266|ref|YP_004007602.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S] gi|311889605|emb|CBH48922.1| putative DNA polymerase III epsilon subunit [Rhodococcus equi 103S] Length = 228 Score = 36.4 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 FD+ETTG D + RI+ V + + +R+ + P Sbjct: 11 AFDLETTGRDPLSARIVTGSVVTV--GGEGHRSRNWIVDPG 49 >gi|325676987|ref|ZP_08156658.1| DNA polymerase III subunit epsilon [Rhodococcus equi ATCC 33707] gi|325552149|gb|EGD21840.1| DNA polymerase III subunit epsilon [Rhodococcus equi ATCC 33707] Length = 228 Score = 36.4 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 FD+ETTG D + RI+ V + + +R+ + P Sbjct: 11 AFDLETTGRDPLSARIVTGSVVTV--GGEGHRSRNWIVDPG 49 >gi|239793055|dbj|BAH72791.1| ACYPI010006 [Acyrthosiphon pisum] Length = 340 Score = 36.4 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 17/172 (9%) Query: 9 KIVFDIETTGL--DSK--NDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN-SPEALKL 62 +V DIE T + IIE AV + K FQ F+ P+ S +KL Sbjct: 95 FVVIDIEATCTENNPADYKFEIIEFPAVLVDAKKRKIIDHFQAFVKPSINPKLSEFCIKL 154 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT + + + SF + F + E ++G + + + Sbjct: 155 TGITQDQIDNADSFEVCLTRFTKWLEE-----------HELGIKHKFSIVTDGPLIWLRF 203 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++ +P ++ K + + ++ + ++ M Sbjct: 204 LYGQCLMSEIPYPKFATKWINIRKVFKAFYFTKQVKYSVPCNLNAMLTFLDM 255 >gi|62263510|gb|AAX78167.1| unknown protein [synthetic construct] Length = 213 Score = 36.4 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGLD + +I EI A+ Sbjct: 36 IDLEMTGLDVDSCKITEIAAI 56 >gi|301784011|ref|XP_002927420.1| PREDICTED: protein maelstrom homolog isoform 1 [Ailuropoda melanoleuca] gi|281348535|gb|EFB24119.1| hypothetical protein PANDA_017187 [Ailuropoda melanoleuca] Length = 434 Score = 36.4 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 EIG V+ F F+ P + + P + Sbjct: 137 CEIGCVKYSLQGGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFESGHNQAT 194 Query: 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + +I N R + Sbjct: 195 VLQNLYRFIHPNPGNWPPIYCKSDDRARVNWCLRHM 230 >gi|15596772|ref|NP_250266.1| hypothetical protein PA1575 [Pseudomonas aeruginosa PAO1] gi|107101007|ref|ZP_01364925.1| hypothetical protein PaerPA_01002037 [Pseudomonas aeruginosa PACS2] gi|218892469|ref|YP_002441336.1| putative exonuclease [Pseudomonas aeruginosa LESB58] gi|254234675|ref|ZP_04927998.1| hypothetical protein PACG_00543 [Pseudomonas aeruginosa C3719] gi|254239923|ref|ZP_04933245.1| hypothetical protein PA2G_00554 [Pseudomonas aeruginosa 2192] gi|9947538|gb|AAG04964.1|AE004586_2 hypothetical protein PA1575 [Pseudomonas aeruginosa PAO1] gi|126166606|gb|EAZ52117.1| hypothetical protein PACG_00543 [Pseudomonas aeruginosa C3719] gi|126193301|gb|EAZ57364.1| hypothetical protein PA2G_00554 [Pseudomonas aeruginosa 2192] gi|218772695|emb|CAW28480.1| putative exonuclease [Pseudomonas aeruginosa LESB58] Length = 183 Score = 36.4 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 10/115 (8%) Query: 9 KIVFDIE-TT--GLDS-KNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRK-NSPEAL 60 +V D+E TT G + IIEIGA + FQ F+ P R + Sbjct: 4 WLVIDLEATTAEGGWPLEEMEIIEIGATLVAAADAREL--DHFQRFVRPVRRPLLTHFCR 61 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 L I+ + ++++ F + + + D E + Sbjct: 62 DLTHISQANVDGAAHLNTVWEAFERWLAQHRPRLAGWASWGDYDRRQLEQEWRQH 116 >gi|291529682|emb|CBK95268.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Eubacterium rectale M104/1] Length = 269 Score = 36.4 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 4/118 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVE--LLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 + +ETTGLD +D +I I A++ D + + ++ N + +PE K+ IT+ Sbjct: 30 ILSVETTGLDKFSDELINIHALKCHFEDKILIEDEEYNRYIR-NTKALTPELEKITKITN 88 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 EFL DK S++ +F+++ E + + A + + + Sbjct: 89 EFLMDKEDLSTVMEDFYNYIGEDANIIGFNTSFLLPMLKYAGFETGWMLDIKDCFDLR 146 >gi|90421943|ref|YP_530313.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18] gi|90103957|gb|ABD85994.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18] Length = 204 Score = 36.4 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 3/28 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDY 37 + D ET GL+ DR+ V+L + Sbjct: 20 VAIDTETMGLNPHRDRLC---VVQLSNG 44 >gi|115522454|ref|YP_779365.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53] gi|115516401|gb|ABJ04385.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53] Length = 204 Score = 36.4 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 3/28 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDY 37 + D ET GL+ DR+ V+L + Sbjct: 20 VAIDTETMGLNPHRDRLC---VVQLSNG 44 >gi|45358454|ref|NP_988011.1| exonuclease [Methanococcus maripaludis S2] gi|44921212|emb|CAF30447.1| Exonuclease [Methanococcus maripaludis S2] Length = 191 Score = 36.4 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 3/125 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL I ++ + + + F + + S + + Sbjct: 2 YVFLDTETTGLHPGQ--IAQLSYLVTDEDLNLKKVFNQYYSVDHMSRSAAKVHGLTVEIL 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +++ I HN FD+ F+ AE +R+ + + + Sbjct: 60 DELSNGMTFEDTVDEVRD-DLEDSVIIGHNISFDIRFLKAEFERLGPEYVPKDKFCTMFH 118 Query: 129 IARRK 133 Sbjct: 119 FTPIC 123 >gi|330899885|gb|EGH31304.1| oligoribonuclease [Pseudomonas syringae pv. japonica str. M301072PT] Length = 178 Score = 36.4 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 16/27 (59%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +NK I D+E TGLD D IIE+ Sbjct: 2 QNKQNLIWIDLEMTGLDPDTDVIIEMA 28 >gi|320321892|gb|EFW77988.1| oligoribonuclease [Pseudomonas syringae pv. glycinea str. B076] gi|320331003|gb|EFW86977.1| oligoribonuclease [Pseudomonas syringae pv. glycinea str. race 4] gi|330872242|gb|EGH06391.1| oligoribonuclease [Pseudomonas syringae pv. glycinea str. race 4] Length = 178 Score = 36.4 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 16/27 (59%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +NK I D+E TGLD D IIE+ Sbjct: 2 QNKQNLIWIDLEMTGLDPDTDVIIEMA 28 >gi|296219709|ref|XP_002756006.1| PREDICTED: ERI1 exoribonuclease 2 [Callithrix jacchus] Length = 687 Score = 36.4 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 56/202 (27%), Gaps = 27/202 (13%) Query: 10 IVFDIETT----GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKN-SPEALKLH 63 IV D E+T G + IIE AV L + F ++ P S ++L Sbjct: 38 IVIDFESTCWNDGKRHHSQEIIEFPAVLLNTSTGQIESEFHAYVQPQEHPILSEFCMELT 97 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + + S+F + ++ + N F G +N Sbjct: 98 GIKQAQVDEGVPLKICLSQFCKWIHKIQQQ---KNIIFAAGVSEPSTSEVNLCAFVTWSD 154 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK-----MMVGG 178 D + + + +D ++ + + Sbjct: 155 WDLGVCLE-------------YECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGAL 201 Query: 179 SQINFGFKTNEDRFFKEEKKTV 200 ++ F E + + T Sbjct: 202 QEVGIEFSGREHSGLDDSRNTA 223 >gi|116666689|pdb|1ZBH|A Chain A, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By 3'- Exonuclease gi|116666690|pdb|1ZBH|B Chain B, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By 3'- Exonuclease gi|116666691|pdb|1ZBH|C Chain C, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By 3'- Exonuclease gi|116666692|pdb|1ZBH|D Chain D, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By 3'- Exonuclease Length = 299 Score = 36.4 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%) Query: 11 VFDIETT---GLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPN 51 + D E T G + IIE V L ++ + TFQ ++ P Sbjct: 82 IIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPE 127 >gi|66043831|ref|YP_233672.1| oligoribonuclease [Pseudomonas syringae pv. syringae B728a] gi|75503630|sp|Q4ZYY8|ORN_PSEU2 RecName: Full=Oligoribonuclease gi|63254538|gb|AAY35634.1| Exonuclease [Pseudomonas syringae pv. syringae B728a] gi|330971545|gb|EGH71611.1| oligoribonuclease [Pseudomonas syringae pv. aceris str. M302273PT] Length = 178 Score = 36.4 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 16/27 (59%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +NK I D+E TGLD D IIE+ Sbjct: 2 QNKQNLIWIDLEMTGLDPDTDVIIEMA 28 >gi|328554793|gb|AEB25285.1| sporulation inhibitor KapD [Bacillus amyloliquefaciens TA208] gi|328913150|gb|AEB64746.1| putative exoribonuclease (3'-5') [Bacillus amyloliquefaciens LL3] Length = 232 Score = 36.4 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 3/148 (2%) Query: 25 RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSEF 83 IIE G V+ +D + TF ++ P + IT E + +F+ + Sbjct: 55 EIIEAGIVKTVDD-EVAETFSSYIKPKKFPKLTKRCKTFLNITQEDVDGGITFNEFIRKL 113 Query: 84 WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNS 143 + ++N + + P +L + L Sbjct: 114 NELDPDKNCTIVTWGNMDMKVLKQNCMFNHIPFPFKGELRDLSLEYKNFFGDRTLTGLWK 173 Query: 144 LCKRYGITISHRSKHGALLDSHLLSDVY 171 + YG + H AL D+ ++ Sbjct: 174 AAEEYGDK-GTGTHHKALDDAMTTHKLF 200 >gi|328463821|gb|EGF35364.1| hypothetical protein AAULH_12021 [Lactobacillus helveticus MTCC 5463] Length = 51 Score = 36.4 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 11/18 (61%), Positives = 13/18 (72%) Query: 14 IETTGLDSKNDRIIEIGA 31 IETT L+ D+IIEI A Sbjct: 22 IETTDLNPTRDQIIEIAA 39 >gi|326403860|ref|YP_004283942.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301] gi|325050722|dbj|BAJ81060.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301] Length = 218 Score = 36.4 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%) Query: 10 IVFDIETTGLDSKNDR--IIEIGA 31 + D ET GLD + DR ++++ A Sbjct: 29 VAVDTETMGLDPRRDRLCLVQLSA 52 >gi|148260666|ref|YP_001234793.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5] gi|146402347|gb|ABQ30874.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5] Length = 218 Score = 36.4 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%) Query: 10 IVFDIETTGLDSKNDR--IIEIGA 31 + D ET GLD + DR ++++ A Sbjct: 29 VAVDTETMGLDPRRDRLCLVQLSA 52 >gi|320536084|ref|ZP_08036140.1| exonuclease [Treponema phagedenis F0421] gi|320147069|gb|EFW38629.1| exonuclease [Treponema phagedenis F0421] Length = 190 Score = 36.4 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 11/117 (9%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLHG 64 M I D ETTGL+ +N EI + T P EA K HG Sbjct: 1 MNTIWCDTETTGLEPENSGAFEIAFIFAGKGKVTCERLFKL-NPLNETILYHEEAAKTHG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAE--------WIAHNAKFDVGFINAELQRI 113 +++E ++ P I +FF + + +N FD + A R Sbjct: 60 VSEEEIRSFPPAEEIVPNIANFFQQAIHVFGDGEKLTFAGYNCNFDYRHLEALFNRC 116 >gi|307685693|dbj|BAJ20777.1| maelstrom homolog [synthetic construct] Length = 434 Score = 36.4 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 EIG V+ F F+ P + + P + Sbjct: 137 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 194 Query: 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + +I N R + Sbjct: 195 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 230 >gi|212696208|ref|ZP_03304336.1| hypothetical protein ANHYDRO_00744 [Anaerococcus hydrogenalis DSM 7454] gi|212676837|gb|EEB36444.1| hypothetical protein ANHYDRO_00744 [Anaerococcus hydrogenalis DSM 7454] Length = 238 Score = 36.4 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 17/36 (47%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44 + + DIETTGLD D ++ +G + + Sbjct: 17 ECILDIETTGLDPNTDSLVVLGLIYFNKDKFYIDQY 52 >gi|171920539|ref|ZP_02931814.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178742|ref|ZP_02964555.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024282|ref|ZP_02996975.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188024438|ref|ZP_02997092.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518687|ref|ZP_03004114.1| exonuclease family [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524119|ref|ZP_03004192.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867468|ref|ZP_03079472.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273258|ref|ZP_03205794.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554562|ref|YP_002284534.1| hypothetical protein UUR10_0122 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550904|ref|ZP_03771853.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551391|ref|ZP_03772337.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903235|gb|EDT49524.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209349|gb|EDU06392.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018731|gb|EDU56771.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188018953|gb|EDU56993.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997687|gb|EDU66784.1| exonuclease family [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659913|gb|EDX53293.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660944|gb|EDX54197.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249778|gb|EDY74558.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209542063|gb|ACI60292.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379206|gb|EEH01571.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380058|gb|EEH02420.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 376 Score = 36.4 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 71/207 (34%), Gaps = 4/207 (1%) Query: 10 IVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIE T D+K D RII+ L R F P+ NS L+ + Sbjct: 17 VFVDIEAT--DNKGDQRIIQFSGYRLNIKKNKIRRFNKKFNPDQEINSRIKTLLNFNKNF 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + +N + FD+ ++ D Sbjct: 75 NNIEQMP-KLDQKWAKEIYNFVKNAIVVTFTDFDIKKMHQLFSHYEFDLEKIIYFDIYKF 133 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ H ++ L SL GI I H AL D+ +L ++++ + ++ + + Sbjct: 134 FEKKLHTNAVPSLFSLGILSGIKIDFFKLHNALYDAFILKEIFLHIRYKTNEELYEMYSY 193 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTR 215 K + + +++K + + Sbjct: 194 YQFLPKIINSSYFITNEQEKNKGIIKK 220 >gi|329663381|ref|NP_001192506.1| ERI1 exoribonuclease 2 [Bos taurus] gi|297490163|ref|XP_002698031.1| PREDICTED: ERI1 exoribonuclease family member 2 [Bos taurus] gi|296473339|gb|DAA15454.1| ERI1 exoribonuclease family member 2 [Bos taurus] Length = 689 Score = 36.4 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 55/176 (31%), Gaps = 6/176 (3%) Query: 10 IVFDIETT----GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKN-SPEALKLH 63 I+ D E+T G ++ IIE AV L + F ++ P S ++L Sbjct: 38 IIIDFESTCWNDGKRHRSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPILSEFCVELT 97 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + + S+F + + + A +E++ + Sbjct: 98 GIKQAQVDEGVPLKICLSQFCKWIQKIQQQKKIIFATTVSDISTSEVKLCAFVTWSDWDL 157 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 L ++ + + +T + S L +V ++ + Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFYRRKPKGLSGALQEVGMQFLGREH 213 >gi|26554402|ref|NP_758336.1| DNA polymerase III [Mycoplasma penetrans HF-2] gi|26454412|dbj|BAC44740.1| probable DNA polymerase III [Mycoplasma penetrans HF-2] Length = 357 Score = 36.4 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 15/170 (8%) Query: 8 RKIVF-DIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++IVF DIE ND RI++ GA+++ ++ F P + ++ Sbjct: 8 KEIVFVDIE------ANDKPKRILQFGAIKIKKNGDIDKK-NWFCNPKCKITP----HIY 56 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 I +K S N + FD F+N +RI K L+ + I Sbjct: 57 KIVSRNIKKIDKGMSHIRITEKIHKYLNNSVLISYGAFDYNFLNNMCKRIIKKKLNVTYI 116 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + LN L + ++ + H A D+ +L ++ + Sbjct: 117 DLQEEWRKISMTKEVWALNKLANFLNVEVNEKELHDAYYDAFVLYQIFCE 166 >gi|297621033|ref|YP_003709170.1| hypothetical protein wcw_0797 [Waddlia chondrophila WSU 86-1044] gi|297376334|gb|ADI38164.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044] Length = 195 Score = 36.4 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 14/24 (58%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIG 30 M I DIETTGLD + I++ Sbjct: 1 MYAIFLDIETTGLDPFIHKPIDLA 24 >gi|256824739|ref|YP_003148699.1| oligoribonuclease (3'->5' exoribonuclease) [Kytococcus sedentarius DSM 20547] gi|256688132|gb|ACV05934.1| oligoribonuclease (3'->5' exoribonuclease) [Kytococcus sedentarius DSM 20547] Length = 223 Score = 36.4 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG 52 R + D E TGL+ D ++EI A V + + QV + P+ Sbjct: 28 RIVWIDCEMTGLEP-TDVLVEIAALVTDFELNVLGEGVQVVIRPDD 72 >gi|162455935|ref|YP_001618302.1| oligoribonuclease [Sorangium cellulosum 'So ce 56'] gi|161166517|emb|CAN97822.1| oligoribonuclease [Sorangium cellulosum 'So ce 56'] Length = 187 Score = 36.4 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 15/29 (51%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30 + R + D+E TGLD + I+EI Sbjct: 1 MTDRSQRMVWVDLEMTGLDESSCAIVEIA 29 >gi|145296078|ref|YP_001138899.1| hypothetical protein cgR_2000 [Corynebacterium glutamicum R] gi|140845998|dbj|BAF54997.1| hypothetical protein [Corynebacterium glutamicum R] Length = 467 Score = 36.4 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 7/144 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEALKLHGI 65 + FD+ET + I +IG V+ +D + + P + + +HGI Sbjct: 114 NFVGFDVET--ANDDWGSICQIGLVKYVDGVEESSE-SWLCTPPESLNFFNEINIGIHGI 170 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E + D+P F+ + + +F + +AHNA+FD ++ D + Sbjct: 171 TPEMVADQPRFADLVPKMVEFVGD--LPLVAHNAQFDFTALSRACAASGIDVPEMIYGCS 228 Query: 126 TLSIARRKHPSSRNDLNSLCKRYG 149 K + L ++ G Sbjct: 229 LTLARNEKLQVENHKLPTVASHLG 252 >gi|116049519|ref|YP_791677.1| hypothetical protein PA14_44130 [Pseudomonas aeruginosa UCBPP-PA14] gi|296390052|ref|ZP_06879527.1| hypothetical protein PaerPAb_17961 [Pseudomonas aeruginosa PAb1] gi|313106587|ref|ZP_07792814.1| putative exonuclease [Pseudomonas aeruginosa 39016] gi|115584740|gb|ABJ10755.1| putative exonuclease [Pseudomonas aeruginosa UCBPP-PA14] gi|310879316|gb|EFQ37910.1| putative exonuclease [Pseudomonas aeruginosa 39016] Length = 183 Score = 36.4 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 10/115 (8%) Query: 9 KIVFDIE-TT--GLDS-KNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRK-NSPEAL 60 +V D+E TT G + IIEIGA + FQ F+ P R + Sbjct: 4 WLVIDLEATTAEGGWPLEEMEIIEIGATLVAAADAREL--DHFQRFVRPVRRPLLTHFCR 61 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 L I+ + +++ F + + + D E + Sbjct: 62 DLTHISQANVDGAAHLDTVWEAFERWLAQHRPRLAGWASWGDYDRRQLEQEWRQH 116 >gi|296537397|ref|ZP_06899246.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957] gi|296262276|gb|EFH09052.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957] Length = 217 Score = 36.4 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%) Query: 10 IVFDIETTGLDSKNDR--IIEIGA 31 + D ET GLD + DR ++++ A Sbjct: 29 VAIDTETMGLDPRRDRLCLVQLSA 52 >gi|296392793|ref|YP_003657677.1| exonuclease RNase T and DNA polymerase III [Segniliparus rotundus DSM 44985] gi|296179940|gb|ADG96846.1| Exonuclease RNase T and DNA polymerase III [Segniliparus rotundus DSM 44985] Length = 202 Score = 36.4 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 13/25 (52%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD 36 D E TGL D++IEI A+ Sbjct: 11 VDCEMTGLRPGFDQLIEIAALVTDG 35 >gi|237711880|ref|ZP_04542361.1| predicted protein [Bacteroides sp. 9_1_42FAA] gi|317474976|ref|ZP_07934245.1| hypothetical protein HMPREF1016_01224 [Bacteroides eggerthii 1_2_48FAA] gi|229454575|gb|EEO60296.1| predicted protein [Bacteroides sp. 9_1_42FAA] gi|316908879|gb|EFV30564.1| hypothetical protein HMPREF1016_01224 [Bacteroides eggerthii 1_2_48FAA] Length = 255 Score = 36.4 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Query: 12 FDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGR 53 D ET GLD + +I AV + +R +Q ++ P G+ Sbjct: 15 LDFETGGLDCRECACTQIALQAVRFDTWQVFDR-YQAYIAPYGK 57 >gi|149068096|gb|EDM17648.1| rCG39336, isoform CRA_a [Rattus norvegicus] gi|149068097|gb|EDM17649.1| rCG39336, isoform CRA_a [Rattus norvegicus] gi|149068098|gb|EDM17650.1| rCG39336, isoform CRA_a [Rattus norvegicus] Length = 99 Score = 36.4 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 5/50 (10%) Query: 10 IVFDIETT----GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRK 54 IV D E+T G + IIE AV L + F ++ P Sbjct: 38 IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHP 87 >gi|118586342|ref|ZP_01543794.1| DNA-dependent DNA polymerase III, epsilon subunit [Oenococcus oeni ATCC BAA-1163] gi|118433233|gb|EAV39947.1| DNA-dependent DNA polymerase III, epsilon subunit [Oenococcus oeni ATCC BAA-1163] Length = 177 Score = 36.4 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 54/153 (35%), Gaps = 5/153 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET S+ + +G + D + + + P S +++G+T Sbjct: 1 MNFLAMDFET--ASSEPWSAVSLGLTIVRDNQ-IAQNWYSLIKPET-SFSYWNTEINGLT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P F ++++ + + HN +FD + L+ + Sbjct: 57 ADDVLDSPKFPEVWADI-KNLYDDYPVVVGHNIRFDNNVLKQTLKYYGLKTPRYLSLDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 + + + L+++ G+ + H Sbjct: 116 YLSRKFQPGMVNHKLDTVVSDLGLFLEHHHNAS 148 >gi|77456743|ref|YP_346248.1| oligoribonuclease [Pseudomonas fluorescens Pf0-1] gi|123606183|sp|Q3KIZ7|ORN_PSEPF RecName: Full=Oligoribonuclease gi|77380746|gb|ABA72259.1| oligoribonuclease [Pseudomonas fluorescens Pf0-1] Length = 180 Score = 36.4 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD +ND IIE+ Sbjct: 10 IDLEMTGLDPENDVIIEMA 28 >gi|224372220|ref|YP_002606592.1| exonuclease family [Nautilia profundicola AmH] gi|223589909|gb|ACM93645.1| exonuclease family [Nautilia profundicola AmH] Length = 271 Score = 36.4 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 58/170 (34%), Gaps = 8/170 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD ETT D II V S FL P + S EA ++H I E + Sbjct: 106 VFDTETT--DIYG-YIISYAVVIQDMQSMDTEEIYDFLNPKAK-ISEEAYEVHKIKQEDI 161 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---ELQRINKDPLDPSRIIDTL 127 + KP+F+ EF + + HN +D G + + P Sbjct: 162 EHKPTFAEKKDEFLQ-IFDNLDMVVGHNVLYDFGVLKRELERAEHFPNIIDIPIFDTMYY 220 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S + C + + + H AL D + V+ +++ Sbjct: 221 SADVVVLEKKKMPRLEECVAFFFGKQNANYHDALEDVKMTLKVFNRLLQE 270 >gi|292655765|ref|YP_003535662.1| hypothetical protein HVO_1615 [Haloferax volcanii DS2] gi|291371980|gb|ADE04207.1| conserved hypothetical protein [Haloferax volcanii DS2] Length = 251 Score = 36.4 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 12/19 (63%) Query: 11 VFDIETTGLDSKNDRIIEI 29 FDIETTGL + D + + Sbjct: 86 FFDIETTGLSPERDSVTTV 104 >gi|305680783|ref|ZP_07403590.1| oligoribonuclease [Corynebacterium matruchotii ATCC 14266] gi|305658988|gb|EFM48488.1| oligoribonuclease [Corynebacterium matruchotii ATCC 14266] Length = 209 Score = 36.4 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 15/25 (60%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD I+E+ A+ Sbjct: 9 RIVWIDLEMTGLDIHEHTIVEVAAL 33 >gi|150398789|ref|YP_001322556.1| exonuclease RNase T and DNA polymerase III [Methanococcus vannielii SB] gi|150011492|gb|ABR53944.1| Exonuclease RNase T and DNA polymerase III [Methanococcus vannielii SB] Length = 189 Score = 36.4 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 2/53 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + D ETTGL I ++ + + + F + S + Sbjct: 2 YVFLDTETTGLHPGQ--IAQLSYLVTDEELNIKKAFNQYYSVEHMSRSAARIH 52 >gi|117928371|ref|YP_872922.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B] gi|117648834|gb|ABK52936.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B] Length = 550 Score = 36.4 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%) Query: 13 DIETTGLDSKNDRI--IEIGA 31 DIETTGL+ DRI +++ Sbjct: 380 DIETTGLNWYADRICTVQLAC 400 >gi|86156636|ref|YP_463421.1| hypothetical protein Adeh_0207 [Anaeromyxobacter dehalogenans 2CP-C] gi|85773147|gb|ABC79984.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 172 Score = 36.4 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 41/171 (23%), Gaps = 5/171 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE---ALKLH 63 M V D+E G ++ GAV + +RTF+ + P PE + Sbjct: 1 MSAYVVDVEADGPIPGKYSMVSFGAVRVEPG--LSRTFRGEVRPISDLWLPEALAISGVT 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + + F + + N FD ++N Sbjct: 59 REQHLRFGEPGEVMADFERWIQETTRGKPVLFSDNLSFDWQYVNWYFHTYLGRNPFGWSG 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L L D+ +K+ Sbjct: 119 RRIGDLYCGMVKDGHAQWKHLRATAHDHDPVNDAKANAGVLLQLVDMGLKL 169 >gi|330965973|gb|EGH66233.1| oligoribonuclease [Pseudomonas syringae pv. actinidiae str. M302091] Length = 178 Score = 36.4 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 16/27 (59%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +NK I D+E TGLD D IIE+ Sbjct: 2 QNKQNLIWIDLEMTGLDPDTDVIIEMA 28 >gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae] Length = 920 Score = 36.4 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 69/233 (29%), Gaps = 27/233 (11%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIG-AVE--------LLDYSKTNR------TFQVFLC 49 N + + D ETTGLD+ D II I A++ L +K + F Sbjct: 347 NSKKLVCIDFETTGLDTFKDTIIGISFAIKSNEAFYLDLSGRTKIGKDKCMNLVFDTL-- 404 Query: 50 PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 E + I + +I + + + N ++ Sbjct: 405 --------EKEDIKVIGHNLKYEYKMMKAIGKSIGNMYFDTMVAAYLINPTRGRYNMDDL 456 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + + ++ + C+ +T LL +H L + Sbjct: 457 AIAYLSYNTIKYSDLTDNAKKTLLDAPLKDVVEYACEDADVTFRFYECFAPLLKTHNLEE 516 Query: 170 VY--IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 ++ I+M + + F + + + SLL++ K EE Sbjct: 517 LFFNIEMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIYAEAGEE 569 >gi|71733293|ref|YP_272859.1| oligoribonuclease [Pseudomonas syringae pv. phaseolicola 1448A] gi|298484922|ref|ZP_07003021.1| Oligoribonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|123638427|sp|Q48P10|ORN_PSE14 RecName: Full=Oligoribonuclease gi|71553846|gb|AAZ33057.1| oligoribonuclease [Pseudomonas syringae pv. phaseolicola 1448A] gi|298160609|gb|EFI01631.1| Oligoribonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330886590|gb|EGH20251.1| oligoribonuclease [Pseudomonas syringae pv. mori str. 301020] Length = 178 Score = 36.4 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 16/27 (59%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +NK I D+E TGLD D IIE+ Sbjct: 2 QNKQNLIWIDLEMTGLDPDTDVIIEMA 28 >gi|116491633|ref|YP_811177.1| DNA polymerase III, epsilon subunit or related 3'-5' exonuclease [Oenococcus oeni PSU-1] gi|116092358|gb|ABJ57512.1| DNA polymerase III, epsilon subunit-like 3'-5' exonuclease [Oenococcus oeni PSU-1] Length = 177 Score = 36.4 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 54/153 (35%), Gaps = 5/153 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET S+ + +G + D + + + P S +++G+T Sbjct: 1 MNFLAMDFET--ASSEPWSAVSLGLTIVRDNQ-IAQNWYSLIKPET-SFSYWNTEINGLT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P F ++++ + + HN +FD + L+ + Sbjct: 57 ADDVLDSPKFPEVWADI-KNLYDDYPVVVGHNVRFDNNVLKQTLKYYGLKTPRYLSLDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 + + + L+++ G+ + H Sbjct: 116 SLPRKFQPGMVNHKLDTVVSDLGLFLEHHHNAS 148 >gi|225021633|ref|ZP_03710825.1| hypothetical protein CORMATOL_01658 [Corynebacterium matruchotii ATCC 33806] gi|224945624|gb|EEG26833.1| hypothetical protein CORMATOL_01658 [Corynebacterium matruchotii ATCC 33806] Length = 209 Score = 36.4 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 15/25 (60%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD I+E+ A+ Sbjct: 9 RIVWIDLEMTGLDIHEHTIVEVAAL 33 >gi|15827135|ref|NP_301398.1| oligoribonuclease [Mycobacterium leprae TN] gi|221229613|ref|YP_002503029.1| oligoribonuclease [Mycobacterium leprae Br4923] gi|7227905|sp|O07708|ORN_MYCLE RecName: Full=Oligoribonuclease gi|2222713|emb|CAB09908.1| hypothetical protein MLCL383.34c [Mycobacterium leprae] gi|13092683|emb|CAC29935.1| putative oligoribonuclease [Mycobacterium leprae] gi|219932720|emb|CAR70520.1| putative oligoribonuclease [Mycobacterium leprae Br4923] Length = 215 Score = 36.4 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D E TGLD +D++IEI A+ Sbjct: 8 IDCEMTGLDLGSDQLIEIAAL 28 >gi|296117576|ref|ZP_06836160.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes DSM 20306] gi|295969307|gb|EFG82548.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes DSM 20306] Length = 467 Score = 36.4 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 5/70 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN--GRKNSPEALKLHGIT 66 + D+ET + I +IGAV + +T + P + +HGIT Sbjct: 107 FVAVDVET--ANGNWGSICQIGAVRFVAGEET-ESKVWLCQPPAGIDHFDDINISIHGIT 163 Query: 67 DEFLKDKPSF 76 + +KD P+F Sbjct: 164 ADDVKDAPTF 173 >gi|320583877|gb|EFW98090.1| 3'-5' RNA exonuclease [Pichia angusta DL-1] Length = 374 Score = 36.4 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 D E TGLD ND IIEI A+ + F+ + + + + Sbjct: 38 IDCEMTGLDLLNDHIIEICALVTDKHLRLIDDEGFEAVIHYSQERMNQMDEWCRTHH 94 >gi|281201272|gb|EFA75484.1| RNA exonuclease 2 [Polysphondylium pallidum PN500] Length = 451 Score = 36.4 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 15/25 (60%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R I D+E TGLD D I+E+ + Sbjct: 274 RLIWVDLEMTGLDITKDHIMEMACI 298 >gi|331005310|ref|ZP_08328699.1| Oligoribonuclease [gamma proteobacterium IMCC1989] gi|330420886|gb|EGG95163.1| Oligoribonuclease [gamma proteobacterium IMCC1989] Length = 180 Score = 36.4 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 12/19 (63%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL +D IIEI Sbjct: 10 IDLEMTGLYPNDDVIIEIA 28 >gi|307149737|ref|YP_003890780.1| exonuclease RNase T/DNA polymerase III [Cyanothece sp. PCC 7822] gi|306986537|gb|ADN18415.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC 7822] Length = 293 Score = 36.4 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 3/151 (1%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTG + N++++E+GAV + + EA ++ I Sbjct: 9 IIDTETTG-NKDNNQVLEVGAVLYSIPNQCMLSCGSSLI-AVDADTINEAYLINKIDPLA 66 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P + F + +AHNA FD + D + + D Sbjct: 67 TQICPQQQNYFLNWLQAAYASADVVVAHNANFDKDVVKKLTWAQKWDKIWLCSLKDFELF 126 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 ++ + S GI+ SHR+ Sbjct: 127 PKQYNGKRDLISLSQFYGIGISCSHRAIDDC 157 >gi|161501966|ref|YP_261869.2| exonuclease I [Pseudomonas fluorescens Pf-5] Length = 475 Score = 36.4 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 10/114 (8%), Positives = 29/114 (25%), Gaps = 3/114 (2%) Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTG++ + DR +++ + ++ + ++ P+ + Sbjct: 8 DYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITGITPGRL 67 Query: 72 DKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + + + +N + N Sbjct: 68 AEQGLGEADFMTRVHEQLARPGTCGVGYNTLRFDDEMTRYSLYRNFFDPYAREW 121 >gi|68346412|gb|AAY94018.1| exodeoxyribonuclease I [Pseudomonas fluorescens Pf-5] Length = 497 Score = 36.4 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 10/114 (8%), Positives = 29/114 (25%), Gaps = 3/114 (2%) Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTG++ + DR +++ + ++ + ++ P+ + Sbjct: 30 DYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITGITPGRL 89 Query: 72 DKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + + + +N + N Sbjct: 90 AEQGLGEADFMTRVHEQLARPGTCGVGYNTLRFDDEMTRYSLYRNFFDPYAREW 143 >gi|50121555|ref|YP_050722.1| hypothetical protein ECA2630 [Pectobacterium atrosepticum SCRI1043] gi|49612081|emb|CAG75531.1| phage-related protein [Pectobacterium atrosepticum SCRI1043] Length = 299 Score = 36.4 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 42/154 (27%), Gaps = 3/154 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M ++ DIET G + + I IGAV + F + + I Sbjct: 1 MNHVMIDIETMGKNPR-APIASIGAVFFNPKTGELGEQFYCRVDFENDMLNGAVTDSGTI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + + + S+ +++ ++ N D + + Sbjct: 60 KWWLRQSPEASAELISDDATPIWGAISQFSDWLTDNAESLKTLKV-WANSPSFDCTILKS 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 P + + + + + + Sbjct: 119 AFERTEIDIPWNYWNERDVRTMKEVGFAIMNMGR 152 >gi|296229906|ref|XP_002760476.1| PREDICTED: protein maelstrom homolog isoform 2 [Callithrix jacchus] Length = 403 Score = 36.4 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 20/96 (20%), Gaps = 2/96 (2%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 EIG V+ F F+ P + + P + Sbjct: 106 CEIGCVKYSLQDGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFESGHSQAT 163 Query: 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + ++I N R + Sbjct: 164 VLQNLYKFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 199 >gi|21672814|ref|NP_660881.1| oligoribonuclease [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008877|sp|Q8K909|ORN_BUCAP RecName: Full=Oligoribonuclease gi|21623465|gb|AAM68092.1| hypothetical oligoribonuclease [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 184 Score = 36.4 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E TGL+S+ RIIEI V Sbjct: 11 IDLEMTGLNSEIHRIIEIATV 31 >gi|317026983|ref|XP_003188586.1| RNA exonuclease Rex2 [Aspergillus niger CBS 513.88] Length = 188 Score = 36.4 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 9/20 (45%), Positives = 13/20 (65%) Query: 12 FDIETTGLDSKNDRIIEIGA 31 D E TGLD+ D+I++I Sbjct: 13 IDCEMTGLDADTDQILQICC 32 >gi|220915352|ref|YP_002490656.1| hypothetical protein A2cp1_0231 [Anaeromyxobacter dehalogenans 2CP-1] gi|219953206|gb|ACL63590.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 172 Score = 36.4 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 41/171 (23%), Gaps = 5/171 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE---ALKLH 63 M V D+E G ++ GAV + +RTF+ + P PE + Sbjct: 1 MSAYVVDVEADGPIPGKYSMVSFGAVRVEPG--LSRTFRGEVRPISDLWLPEALAISAVT 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + + F + + + N FD ++N Sbjct: 59 REQHLRFGEPGEVMAAFERWIQETTKGKPVLFSDNLSFDWQWMNWYFHTYLGRNPFGWSG 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L L + +K+ Sbjct: 119 RRIGDLYCGMVKDGHAQWKHLRPTAHDHDPVNDAKANAGVLLQLVHMGLKL 169 >gi|146284105|ref|YP_001174258.1| oligoribonuclease [Pseudomonas stutzeri A1501] gi|166216582|sp|A4VR15|ORN_PSEU5 RecName: Full=Oligoribonuclease gi|145572310|gb|ABP81416.1| oligoribonuclease [Pseudomonas stutzeri A1501] gi|327482422|gb|AEA85732.1| oligoribonuclease [Pseudomonas stutzeri DSM 4166] Length = 180 Score = 36.4 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD ND IIE+ Sbjct: 10 IDLEMTGLDPDNDVIIEMA 28 >gi|21221244|ref|NP_627023.1| oligoribonuclease [Streptomyces coelicolor A3(2)] gi|289771467|ref|ZP_06530845.1| oligoribonuclease [Streptomyces lividans TK24] gi|11133768|sp|P57666|ORN_STRCO RecName: Full=Oligoribonuclease gi|9588056|dbj|BAB03461.1| oligoribonuclease [Streptomyces coelicolor A3(2)] gi|10303264|emb|CAC10102.1| oligoribonuclease [Streptomyces coelicolor A3(2)] gi|289701666|gb|EFD69095.1| oligoribonuclease [Streptomyces lividans TK24] Length = 200 Score = 36.4 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGR 53 R + D E TGL +D +IE+ A V + + + + P R Sbjct: 4 RMVWIDCEMTGLSLSDDALIEVAALVTDSELNILGEGVDIVIRPPER 50 >gi|325918073|ref|ZP_08180231.1| Exodeoxyribonuclease I subunit C [Xanthomonas vesicatoria ATCC 35937] gi|325535696|gb|EGD07534.1| Exodeoxyribonuclease I subunit C [Xanthomonas vesicatoria ATCC 35937] Length = 481 Score = 36.4 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 1/49 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56 + +D+ET G D + RI + AV + F+ P Sbjct: 5 FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIDEPISFFVQPADDLLP 53 >gi|302551620|ref|ZP_07303962.1| oligoribonuclease [Streptomyces viridochromogenes DSM 40736] gi|302469238|gb|EFL32331.1| oligoribonuclease [Streptomyces viridochromogenes DSM 40736] Length = 200 Score = 36.4 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGR 53 R + D E TGL +D +IE+ A V + + + + P R Sbjct: 4 RMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDR 50 >gi|302560513|ref|ZP_07312855.1| oligoribonuclease [Streptomyces griseoflavus Tu4000] gi|302478131|gb|EFL41224.1| oligoribonuclease [Streptomyces griseoflavus Tu4000] Length = 200 Score = 36.4 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGR 53 R + D E TGL +D +IE+ A V + + + + P R Sbjct: 4 RMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDR 50 >gi|55661889|emb|CAH69955.1| maelstrom homolog (Drosophila) [Homo sapiens] Length = 316 Score = 36.4 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 19/96 (19%), Gaps = 2/96 (2%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 EIG V+ F F+ P + + P + Sbjct: 106 CEIGCVKYSLQEGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFERGHNQAT 163 Query: 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + +I N R + Sbjct: 164 VLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 199 >gi|172041073|ref|YP_001800787.1| oligoribonuclease [Corynebacterium urealyticum DSM 7109] gi|171852377|emb|CAQ05353.1| putative oligoribonuclease [Corynebacterium urealyticum DSM 7109] Length = 209 Score = 36.4 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%) Query: 10 IVF-DIETTGLDSKNDRIIEIGAV 32 IV+ D E TGLD ++EI + Sbjct: 13 IVWADCEMTGLDPDRHVLVEIAVI 36 >gi|145588712|ref|YP_001155309.1| oligoribonuclease [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047118|gb|ABP33745.1| Exonuclease, RNase T and DNA polymerase III [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 195 Score = 36.1 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 18/32 (56%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT 43 D+E +GL+ + +RI+EI + + T T Sbjct: 22 VDMEMSGLNPETERILEIAIIVTDAHLNTIAT 53 >gi|56461400|ref|YP_156681.1| oligoribonuclease [Idiomarina loihiensis L2TR] gi|81821669|sp|Q5QVW2|ORN_IDILO RecName: Full=Oligoribonuclease gi|56180410|gb|AAV83132.1| Oligoribonuclease (3'->5' exoribonuclease) [Idiomarina loihiensis L2TR] Length = 183 Score = 36.1 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Query: 1 MIRKNK-MRKIVFDIETTGLDSKNDRIIEIG 30 M NK R I D+E TGL+ + IIE+ Sbjct: 1 MTEDNKKQRLIWIDLEMTGLEPDENHIIEVA 31 >gi|314927712|gb|EFS91543.1| hypothetical protein HMPREF9607_02279 [Propionibacterium acnes HL044PA1] gi|314954535|gb|EFS98941.1| hypothetical protein HMPREF9609_02440 [Propionibacterium acnes HL027PA1] Length = 54 Score = 36.1 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 3/23 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV 32 ++ D ETT LD RIIEI + Sbjct: 17 VILDTETTDLD---GRIIEISII 36 >gi|241889971|ref|ZP_04777269.1| ATP-dependent helicase DinG homolog [Gemella haemolysans ATCC 10379] gi|241863593|gb|EER67977.1| ATP-dependent helicase DinG homolog [Gemella haemolysans ATCC 10379] Length = 616 Score = 36.1 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 78/215 (36%), Gaps = 8/215 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIE T + II+ A +L + + + ++ P ++ S +L GI++E L Sbjct: 7 VVDIELT----DDKEIIQFSATKLDENFREILSINYYIQPK-KQVSTFVTELTGISNEML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP F + E +++ + + I + +DT+ ++ Sbjct: 62 HDKPFFEDVAHELYNYIKGDILVCHGLPSDYV---ILKKRFHDVGILYKAKLSLDTVELS 118 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R PS + S + H A +D + + ++ S+IN + Sbjct: 119 RLFLPSQTSYRLSDLSNSLGLYTGDQYHNAAIDVKVTVKLLKEIARKISKINTDNYKKIE 178 Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 ++ ++ + R++ +E + Sbjct: 179 NLLEKIDLSMYKFARFCRNRAKSVEFNSDEFINYQ 213 >gi|194910229|ref|XP_001982095.1| GG12405 [Drosophila erecta] gi|190656733|gb|EDV53965.1| GG12405 [Drosophila erecta] Length = 184 Score = 36.1 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 1/56 (1%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEALKLHGITD 67 D+E TGLD + D+I+E+ + F + Sbjct: 15 DLEMTGLDIEKDKILEVSCIITDKDLNVKSEATCFAINHPQEVYDTMNDWCMEQHY 70 >gi|296229904|ref|XP_002760475.1| PREDICTED: protein maelstrom homolog isoform 1 [Callithrix jacchus] Length = 434 Score = 36.1 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 20/96 (20%), Gaps = 2/96 (2%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 EIG V+ F F+ P + + P + Sbjct: 137 CEIGCVKYSLQDGIMADFHSFINPG--EIPRGFRFHCQAASDSSHKIPISNFESGHSQAT 194 Query: 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + ++I N R + Sbjct: 195 VLQNLYKFIHPNPGNWPPIYCKSDDRTRVNWCLKHM 230 >gi|229076290|ref|ZP_04209255.1| Sporulation inhibitor KapD [Bacillus cereus Rock4-18] gi|229099371|ref|ZP_04230301.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-29] gi|229105531|ref|ZP_04236165.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-28] gi|229118383|ref|ZP_04247737.1| Sporulation inhibitor KapD [Bacillus cereus Rock1-3] gi|228664953|gb|EEL20441.1| Sporulation inhibitor KapD [Bacillus cereus Rock1-3] gi|228677801|gb|EEL32044.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-28] gi|228683995|gb|EEL37943.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-29] gi|228706725|gb|EEL58933.1| Sporulation inhibitor KapD [Bacillus cereus Rock4-18] Length = 207 Score = 36.1 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 23/203 (11%), Positives = 50/203 (24%), Gaps = 19/203 (9%) Query: 8 RKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR----K 54 R + D E T G + IIE+G V ++ K T+ + P Sbjct: 5 RFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSSHVRPKTFPSLTD 60 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 + L + + P +E+ W + K Sbjct: 61 RCKKFLGIKQEIVDKGISFPELIDKLAEYEKRCKPTIVTWGNMDMKVLKHNCEMSGVAFP 120 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR--YGITISHRSKHGALLDSHLLSDVYI 172 ++ ++ + + G + L + Sbjct: 121 FFGQCRDLSLEYKKFFGERNQTGLWKAIEAYGKVGTGKHHCALDDAMTTYNIFKLVEKDK 180 Query: 173 KMMVGGSQINFGFKTNEDRFFKE 195 + +V + G + + K+ Sbjct: 181 EYLVKPAPPTLGELVDFSKVLKK 203 >gi|225572238|ref|ZP_03781102.1| hypothetical protein RUMHYD_00532 [Blautia hydrogenotrophica DSM 10507] gi|225040300|gb|EEG50546.1| hypothetical protein RUMHYD_00532 [Blautia hydrogenotrophica DSM 10507] Length = 334 Score = 36.1 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 55/215 (25%), Gaps = 6/215 (2%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++K + ++ DIETTG KN ++ IG + + S + E L Sbjct: 24 QSKHKYVLLDIETTGFTPKNSQLYMIGCIHFSENSWIQTQWL------AETFDEEWKILQ 77 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 F + + F + + + + Sbjct: 78 EFLTHFQGNFHFITYNGDRFDLSYLTDKKSQCQCIKALPWQSSLDLYKLLKPYKKMLNFS 137 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +R S + I ++ LL+ ++ ++ Sbjct: 138 HMKQRDLENFLGFNRKYDVSGKECVTIYQRFLRENQPEQAEILLNHNRQDLLGLLKILSM 197 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 T + + + K L ++ K Sbjct: 198 LTYTLPSAGDFQIEDLSTDQQSFKAVLRLPHKLPK 232 >gi|226942895|ref|YP_002797968.1| oligoribonuclease [Azotobacter vinelandii DJ] gi|226717822|gb|ACO76993.1| Exonuclease [Azotobacter vinelandii DJ] Length = 180 Score = 36.1 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 16/27 (59%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +N I D+E TGL+ + D IIE+ Sbjct: 2 QNPQNLIWIDLEMTGLNPERDVIIEMA 28 >gi|293609598|ref|ZP_06691900.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828050|gb|EFF86413.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 234 Score = 36.1 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 11/45 (24%) Query: 1 MIRKNKMRKIVFDIETT---GLDSKNDRIIEIGA--VELLDYSKT 40 MI+ M+ I+ D ET GL IEI +E+ T Sbjct: 1 MIKGPVMQTIILDTETHTLNGLP------IEIAYAPIEINAGKLT 39 >gi|325926745|ref|ZP_08188053.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Xanthomonas perforans 91-118] gi|325542826|gb|EGD14281.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Xanthomonas perforans 91-118] Length = 183 Score = 36.1 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 9/172 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIE +G ++ IGAV L+D +T +F + L P ++ PEAL + G E Sbjct: 7 FVSVDIEASGPIPGEFSLLSIGAV-LVDRPET--SFYLELKPEDTRHDPEALAVTGFEIE 63 Query: 69 FLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 L Q ++ NA FD F+N + + Sbjct: 64 ELARNGVEPGAAMRKFGQWLSEFSAPSQRPVFVGLNAAFDWSFVNYYFHKYCGENPFGFT 123 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +D + S + S + H AL D+ ++++ K+ Sbjct: 124 ALDIKAFFMGVVGSRWDQTKSSQMEKLLRPKLTGTHNALEDARYQAELFRKL 175 >gi|225022753|ref|ZP_03711945.1| hypothetical protein CORMATOL_02798 [Corynebacterium matruchotii ATCC 33806] gi|224944474|gb|EEG25683.1| hypothetical protein CORMATOL_02798 [Corynebacterium matruchotii ATCC 33806] Length = 232 Score = 36.1 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 62/207 (29%), Gaps = 3/207 (1%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N ++ + FD+ETT + RI+ V + Q L G A K+HG Sbjct: 11 NPLKVLSFDLETTSANPFEARIVTSALVHIDSG---GAHPQELLADPGVPIPEAATKVHG 67 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT E+ ++ + ++ ++ + L + L + Sbjct: 68 ITTEYAREHGRPHADVLAETIATIKKAWADGYTLIVYNASYDLTVLHSLEPGFLITGPVY 127 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 D + + P R + + H A D+ + + K Sbjct: 128 DPYVMDKLLDPYRRGKRTLTALCEEYQVRLENAHEATSDALAAARIAWKQAKKRFASQIS 187 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKP 211 +T E + + + K+ Sbjct: 188 PQTMEQLMEFQAVGYYRSQNDFKKYLL 214 >gi|290891242|ref|ZP_06554304.1| hypothetical protein AWRIB429_1694 [Oenococcus oeni AWRIB429] gi|290479206|gb|EFD87868.1| hypothetical protein AWRIB429_1694 [Oenococcus oeni AWRIB429] Length = 177 Score = 36.1 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 61/174 (35%), Gaps = 7/174 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET S+ + +G + D + + + P S +++G+T Sbjct: 1 MNFLAMDFET--ASSEPWSAVSLGLTIVRDNQ-IAQNWYSLIKPET-SFSYWNTEINGLT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P F ++++ + + HN +FD + L+ + Sbjct: 57 ADDVLDSPKFPEVWADI-KNLYDDYPVVVGHNVRFDNNVLKQTLKYYGLKTPRYLSLDTV 115 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + + + L+++ G+ H A D+ + + I + + Sbjct: 116 SLSRKFQPGMVNHKLDTVVSDLGL--FLEHHHNASDDAQASAQILIYEIEHFGE 167 >gi|255526643|ref|ZP_05393549.1| conserved hypothetical protein [Clostridium carboxidivorans P7] gi|296186102|ref|ZP_06854507.1| hypothetical protein CLCAR_1545 [Clostridium carboxidivorans P7] gi|255509676|gb|EET86010.1| conserved hypothetical protein [Clostridium carboxidivorans P7] gi|296049370|gb|EFG88799.1| hypothetical protein CLCAR_1545 [Clostridium carboxidivorans P7] Length = 265 Score = 36.1 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 15/27 (55%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS 38 FDIETTG D + DR+I I D Sbjct: 28 FDIETTGFDKEEDRVILISMGRFKDDK 54 >gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] Length = 936 Score = 36.1 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 37/146 (25%), Gaps = 15/146 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD ETTG D+ ++ +F + P + I Sbjct: 365 ICFDTETTGTDANQCELV-------------GLSFS--IKKGEAWYVPVPVNCDEIQPIV 409 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + KP F + + + + + G + + D +D L+ Sbjct: 410 DEFKPIFENPAIGKIGQNIKFDMLVLKYYNVTMQGELFDTMLAHYIIDPDTRHNMDILAE 469 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHR 155 + K G Sbjct: 470 NYLGYSPVSITTLIGAKGKGQGTMRD 495 >gi|172058850|ref|YP_001815310.1| exonuclease RNase T and DNA polymerase III [Exiguobacterium sibiricum 255-15] gi|171991371|gb|ACB62293.1| Exonuclease RNase T and DNA polymerase III [Exiguobacterium sibiricum 255-15] Length = 190 Score = 36.1 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 8/176 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D ET + + I G V T+ QV + P +++HGI Sbjct: 7 AIDFET--ANRNSRSICAFGWSVLSEGRVVTSE--QVLINPE-EDFDAGNIRVHGIRPSD 61 Query: 70 LKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ E+ IAHNA FD+G + +Q+ + + + T+ Sbjct: 62 VWDAPALPEAMEAHGLFKLIEKAELVIAHNAAFDMGALQKAVQKYDLYQMPTFQYGCTVK 121 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++R+ +P + LN++ + ++ H LL + Sbjct: 122 LSRKLYPWLPNHKLNTMAEFLNVSFKHHDAKEDAYICALLLQDMFDRTNIEHPVEL 177 >gi|228942073|ref|ZP_04104614.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975003|ref|ZP_04135563.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981594|ref|ZP_04141890.1| Sporulation inhibitor KapD [Bacillus thuringiensis Bt407] gi|228778079|gb|EEM26350.1| Sporulation inhibitor KapD [Bacillus thuringiensis Bt407] gi|228784708|gb|EEM32727.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817589|gb|EEM63673.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942675|gb|AEA18571.1| sporulation inhibitor KapD [Bacillus thuringiensis serovar chinensis CT-43] Length = 207 Score = 36.1 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 22/203 (10%), Positives = 48/203 (23%), Gaps = 19/203 (9%) Query: 8 RKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR----K 54 R + D E T G + IIE+G V + T+ + P Sbjct: 5 RFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVAGRK-VEDTYSSHVRPKTFPSLTD 60 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 + L + + P +E+ W + K Sbjct: 61 RCKKFLGIKQEVVDKGISFPELVKKLAEYETKCKPTIVTWGNMDMKVLKHNCEMAGIAFP 120 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR--YGITISHRSKHGALLDSHLLSDVYI 172 ++ ++ + + G + L + Sbjct: 121 FFGQCRDLSLEYKKFFGERNQTGLWKAIEAYGKVGTGKHHCALDDAMTTYNIFKLVEKDK 180 Query: 173 KMMVGGSQINFGFKTNEDRFFKE 195 + +V + G + + K+ Sbjct: 181 EYLVKPAPPTLGELVDFSKVLKK 203 >gi|195145416|ref|XP_002013689.1| GL24271 [Drosophila persimilis] gi|198452116|ref|XP_001358637.2| GA10162 [Drosophila pseudoobscura pseudoobscura] gi|194102632|gb|EDW24675.1| GL24271 [Drosophila persimilis] gi|198131794|gb|EAL27778.2| GA10162 [Drosophila pseudoobscura pseudoobscura] Length = 187 Score = 36.1 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 13 DIETTGLDSKNDRIIEIGAV 32 D+E TGLD D+I+E+ + Sbjct: 18 DLEMTGLDVDTDKILEVSCI 37 >gi|294675670|ref|YP_003576285.1| ribonuclease D [Rhodobacter capsulatus SB 1003] gi|294474490|gb|ADE83878.1| ribonuclease D-1 [Rhodobacter capsulatus SB 1003] Length = 204 Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 8/18 (44%), Positives = 11/18 (61%) Query: 10 IVFDIETTGLDSKNDRII 27 + D ET GLD + DR+ Sbjct: 20 VAIDTETMGLDPRRDRLC 37 >gi|260577298|ref|ZP_05845271.1| 3'-5' exonuclease [Rhodobacter sp. SW2] gi|259020479|gb|EEW23802.1| 3'-5' exonuclease [Rhodobacter sp. SW2] Length = 204 Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 8/18 (44%), Positives = 11/18 (61%) Query: 10 IVFDIETTGLDSKNDRII 27 + D ET GLD + DR+ Sbjct: 20 VAIDTETMGLDPRRDRLC 37 >gi|258544438|ref|ZP_05704672.1| oligoribonuclease [Cardiobacterium hominis ATCC 15826] gi|258520327|gb|EEV89186.1| oligoribonuclease [Cardiobacterium hominis ATCC 15826] Length = 178 Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLDS+ D I+EI Sbjct: 10 IDLEMTGLDSQRDHILEIA 28 >gi|119385336|ref|YP_916392.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222] gi|119375103|gb|ABL70696.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222] Length = 204 Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 8/18 (44%), Positives = 11/18 (61%) Query: 10 IVFDIETTGLDSKNDRII 27 + D ET GLD + DR+ Sbjct: 20 VAIDTETMGLDPRRDRLC 37 >gi|229169634|ref|ZP_04297336.1| Sporulation inhibitor KapD [Bacillus cereus AH621] gi|228613830|gb|EEK70953.1| Sporulation inhibitor KapD [Bacillus cereus AH621] Length = 207 Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 16/183 (8%) Query: 8 RKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SP 57 R + D E T G + IIE+G V ++ K T+ + P + + Sbjct: 5 RFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSSHIRPKTFPSLTD 60 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 K GI E + SF + + ++ + + + P Sbjct: 61 RCKKFLGIKQEVVDKGISFHELVEKLAEYEKSCKPTIVTWGNMDMKVLKHNCEMAGVEFP 120 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +L + ++ L + YG KH LD + + K++ Sbjct: 121 FFGQCRDLSLEYKKFFGERNQTGLWKAIEAYGKA--GTGKHHCALDDAMTTYNIFKLVEK 178 Query: 178 GSQ 180 + Sbjct: 179 DKE 181 >gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1] gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1] Length = 920 Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIG-AVE 33 N + + D ETTGLD+ D II I A++ Sbjct: 347 NSKKLVCIDFETTGLDTFKDTIIGISFAIK 376 >gi|171463904|ref|YP_001798017.1| Exonuclease RNase T and DNA polymerase III [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193442|gb|ACB44403.1| Exonuclease RNase T and DNA polymerase III [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 198 Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 18/32 (56%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT 43 D+E +GL+ + +RI+EI + + T T Sbjct: 25 VDMEMSGLNPETERILEIAIIVTDAHLNTIAT 56 >gi|145542502|ref|XP_001456938.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124424752|emb|CAK89541.1| unnamed protein product [Paramecium tetraurelia] Length = 176 Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 7/59 (11%) Query: 15 ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFLKD 72 E TGL+ D+I+EI V T+ + + P+ ++ + Sbjct: 2 EMTGLNVFQDQILEIACV------LTDFKLETIIKGPHLVIHADNQVLEGMDQWCTKTH 54 >gi|305682188|ref|ZP_07404992.1| exonuclease [Corynebacterium matruchotii ATCC 14266] gi|305658661|gb|EFM48164.1| exonuclease [Corynebacterium matruchotii ATCC 14266] Length = 230 Score = 36.1 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 18/40 (45%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44 N ++ + FD+ETT + RI+ V + + F Sbjct: 9 NPLKVLSFDLETTSANPFEARIVTSALVHIDSGGAHPQEF 48 >gi|188992104|ref|YP_001904114.1| exonuclease I [Xanthomonas campestris pv. campestris str. B100] gi|167733864|emb|CAP52070.1| Exodeoxyribonuclease I [Xanthomonas campestris pv. campestris] Length = 481 Score = 36.1 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 3/118 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65 + +D+ET G D + RI + AV F+ P + + Sbjct: 5 FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 L++ + + F+ + + +N+ N Sbjct: 65 PQHALREGVNEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122 >gi|21231005|ref|NP_636922.1| exonuclease I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768990|ref|YP_243752.1| exonuclease I [Xanthomonas campestris pv. campestris str. 8004] gi|21112628|gb|AAM40846.1| exodeoxyribonuclease I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574322|gb|AAY49732.1| exodeoxyribonuclease I [Xanthomonas campestris pv. campestris str. 8004] Length = 481 Score = 36.1 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 3/118 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65 + +D+ET G D + RI + AV F+ P + + Sbjct: 5 FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 L++ + + F+ + + +N+ N Sbjct: 65 PQHALREGVNEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122 >gi|319441121|ref|ZP_07990277.1| DNA polymerase III subunit epsilon [Corynebacterium variabile DSM 44702] Length = 228 Score = 36.1 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 13/25 (52%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD 36 FD+ETTG D RI+ + + Sbjct: 15 FDLETTGPDPLTARIVTSALITING 39 >gi|289669559|ref|ZP_06490634.1| exonuclease I [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 481 Score = 36.1 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 33/118 (27%), Gaps = 3/118 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65 + +D+ET G D + RI + AV F+ P + + Sbjct: 5 FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 L++ + + F+ + + + +N+ N Sbjct: 65 PQHALREGITEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122 >gi|289663122|ref|ZP_06484703.1| exonuclease I [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 481 Score = 36.1 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 33/118 (27%), Gaps = 3/118 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65 + +D+ET G D + RI + AV F+ P + + Sbjct: 5 FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 L++ + + F+ + + + +N+ N Sbjct: 65 PQHALREGITEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122 >gi|256545132|ref|ZP_05472498.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170] gi|256399173|gb|EEU12784.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170] Length = 305 Score = 36.1 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQ 45 + + DIETTGLD K D+++ +G + + ++ F Sbjct: 17 ECILDIETTGLDPKIDKLVVLGLIYFDYKKNKFYIDQYFS 56 >gi|302521659|ref|ZP_07274001.1| oligoribonuclease [Streptomyces sp. SPB78] gi|318057630|ref|ZP_07976353.1| oligoribonuclease [Streptomyces sp. SA3_actG] gi|318077542|ref|ZP_07984874.1| oligoribonuclease [Streptomyces sp. SA3_actF] gi|333024701|ref|ZP_08452765.1| putative oligoribonuclease [Streptomyces sp. Tu6071] gi|302430554|gb|EFL02370.1| oligoribonuclease [Streptomyces sp. SPB78] gi|332744553|gb|EGJ74994.1| putative oligoribonuclease [Streptomyces sp. Tu6071] Length = 198 Score = 36.1 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGR 53 R + D E TGL ND +IE+ A V + + + + P + Sbjct: 4 RMVWIDCEMTGLSLANDALIEVAALVTDSELNILGDGVDIVIRPPEQ 50 >gi|219882682|ref|YP_002477846.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter chlorophenolicus A6] gi|219861688|gb|ACL42029.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter chlorophenolicus A6] Length = 197 Score = 36.1 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 4/48 (8%) Query: 9 KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 + D E L ++K+ I +IG V++ D + P G++N Sbjct: 7 FVAIDFE---LANAKHSSICQIGLVKVRDGVLGKTHTHFVMPPAGQQN 51 >gi|167625547|ref|YP_001675841.1| oligoribonuclease [Shewanella halifaxensis HAW-EB4] gi|167355569|gb|ABZ78182.1| Exonuclease RNase T and DNA polymerase III [Shewanella halifaxensis HAW-EB4] Length = 181 Score = 36.1 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD D+IIE+ Sbjct: 11 VDLEMTGLDPAVDKIIEMA 29 >gi|268578587|ref|XP_002644276.1| Hypothetical protein CBG14047 [Caenorhabditis briggsae] Length = 292 Score = 36.1 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 37/132 (28%), Gaps = 7/132 (5%) Query: 8 RKIVFDIETTGLDSKND---RIIEIGAVELL---DYSKTNRTFQVFLCPNGRKN-SPEAL 60 R I+ D ETT +D +I+ V F F+ P S Sbjct: 4 RVIILDFETTSEGETHDYPFEVIQFSVVPYDVKAKTILEGHAFNKFVRPVVNPVLSKHCT 63 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + GI E L +F ++ +F + + + D + + + Sbjct: 64 EFTGIKQESLNAADTFLVVYKQFLKWLQKNGFQERHFAIVSDSRQDMWRIAQYQFRLVQE 123 Query: 121 SRIIDTLSIARR 132 + Sbjct: 124 TMPSMFRQWINI 135 >gi|297242761|ref|ZP_06926699.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis AMD] gi|296888972|gb|EFH27706.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis AMD] Length = 261 Score = 36.1 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 9/110 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 FD ETTG + D I+ V EL T+ + P+ N + + Sbjct: 34 FDTETTGANIGKDAIVSATLVLRNPELAHAGDVVSTW--LINPHQPMNPKASEVNGFTDE 91 Query: 68 EFLKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRIN 114 + +N +A+NA FD+ + +L+R + Sbjct: 92 YLQEHGGEPEEELEFLARAVSIAQAKNIPLLAYNAPFDIAMLRHDLKRWH 141 >gi|219109276|pdb|3CG7|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4) gi|219109277|pdb|3CG7|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4) gi|219109290|pdb|3CM5|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4) Bound With Mn gi|219109291|pdb|3CM5|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4) Bound With Mn gi|219109292|pdb|3CM6|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4) Bound With Er gi|219109293|pdb|3CM6|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4) Bound With Er Length = 308 Score = 36.1 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 54/187 (28%), Gaps = 13/187 (6%) Query: 11 VFDIETTGLDSKND---RIIEIGAVELL---DYSKTNRTFQVFLCPN-GRKNSPEALKLH 63 + D ETT + D +I+ V D + + +F ++ P R + + Sbjct: 23 ILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFT 82 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINKDPL 118 GI + +F ++ +F + ++ + + +++ N Sbjct: 83 GIPQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMP 142 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + I+ I + S G + + D + Sbjct: 143 AFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATIL 202 Query: 178 GSQINFG 184 IN G Sbjct: 203 QRMINMG 209 >gi|95116636|ref|NP_041148.2| ORF57 [Ictalurid herpesvirus 1] gi|114152802|sp|P28859|DPOL_ICHVA RecName: Full=DNA polymerase gi|94449347|gb|AAA88160.2| ORF57 [Ictalurid herpesvirus 1] Length = 1512 Score = 36.1 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 54/179 (30%), Gaps = 20/179 (11%) Query: 17 TGLDS--------KNDRIIEIGAVELLDYSKTN---RTFQVFLCPNGRKNSPEALKLHGI 65 TGL K I+ I V + +Y KT + + V+ +N E + + + Sbjct: 251 TGLPPSPFVGITQKLHEIVSISLV-VCNYHKTGPKKKEYYVYYNTKKMENPMEMIPVEHL 309 Query: 66 T----DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + + + F + + +NA+FD+ I L+ P Sbjct: 310 HLDASRIKFEACKNEFYMLLAFINRLRKSVNVLYVYNAQFDIQVIQQRLRYYAFKQRAPR 369 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I + + K L+ +L Y+K++ G Sbjct: 370 CCKGHDDIPHEWGKALMEKWEAFLSVKPQLF----KAQILMGQDILKANYLKLLEGIGS 424 >gi|27904991|ref|NP_778117.1| oligoribonuclease [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396112|sp|Q89A34|ORN_BUCBP RecName: Full=Oligoribonuclease gi|27904389|gb|AAO27222.1| oligoribonuclease [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 160 Score = 36.1 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 12/19 (63%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ +IIEI Sbjct: 11 IDLEMTGLNPNIHKIIEIA 29 >gi|188576332|ref|YP_001913261.1| exonuclease I [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520784|gb|ACD58729.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae PXO99A] Length = 481 Score = 36.1 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 33/118 (27%), Gaps = 3/118 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65 + +D+ET G D + RI + AV F+ P + + Sbjct: 5 FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 L++ + + F+ + + + +N+ N Sbjct: 65 PQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122 >gi|166711560|ref|ZP_02242767.1| exonuclease I [Xanthomonas oryzae pv. oryzicola BLS256] Length = 481 Score = 36.1 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 33/118 (27%), Gaps = 3/118 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65 + +D+ET G D + RI + AV F+ P + + Sbjct: 5 FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 L++ + + F+ + + + +N+ N Sbjct: 65 PQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122 >gi|266706193|gb|ACY78400.1| OrnA [Streptomyces chattanoogensis] Length = 206 Score = 36.1 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPN 51 R + D E TGL ND +IE+ A V + + V + P Sbjct: 4 RMVWIDCEMTGLSLANDALIEVAALVTDSELNVLGDGVDVVIRPP 48 >gi|259908733|ref|YP_002649089.1| Endodeoxyribonuclease [Erwinia pyrifoliae Ep1/96] gi|224964355|emb|CAX55864.1| Endodeoxyribonuclease [Erwinia pyrifoliae Ep1/96] gi|283478705|emb|CAY74621.1| hypothetical protein EPYR_02241 [Erwinia pyrifoliae DSM 12163] Length = 189 Score = 36.1 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 38/140 (27%), Gaps = 3/140 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M ++ D+ET G I+ IGAV S+ F V + A+ Sbjct: 1 MNHLMLDLETMGTKPDTP-IVSIGAVFFDPQSSELGEEFYVAVN-LTSAMEQGAIPDGDT 58 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +LK P + ++H N D + Sbjct: 59 IIWWLKQSPEARAAICSDAALKITDALSELSHFINRHANNTKYLNVWGNGANFDNVIVRG 118 Query: 126 TLSIARRKHPSSRNDLNSLC 145 A + P + + + Sbjct: 119 AFERAGQSCPWQFWNDHDVR 138 >gi|167042103|gb|ABZ06837.1| hypothetical protein ALOHA_HF4000ANIW93E5ctg6g5 [uncultured marine crenarchaeote HF4000_ANIW93E5] Length = 182 Score = 36.1 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 12/18 (66%), Positives = 16/18 (88%) Query: 12 FDIETTGLDSKNDRIIEI 29 FDIETTG+DS+ D++I I Sbjct: 16 FDIETTGIDSEKDKVITI 33 >gi|167766365|ref|ZP_02438418.1| hypothetical protein CLOSS21_00869 [Clostridium sp. SS2/1] gi|317496793|ref|ZP_07955123.1| hypothetical protein HMPREF0996_00102 [Lachnospiraceae bacterium 5_1_63FAA] gi|167711956|gb|EDS22535.1| hypothetical protein CLOSS21_00869 [Clostridium sp. SS2/1] gi|316895805|gb|EFV17957.1| hypothetical protein HMPREF0996_00102 [Lachnospiraceae bacterium 5_1_63FAA] Length = 310 Score = 36.1 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 18/37 (48%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS 38 + N + + FDIETTGL + I IG ++ Sbjct: 1 MEHNIQQSLFFDIETTGLSADISAITVIGCCDMDGNV 37 >gi|310817096|ref|YP_003965060.1| 3'-5' exonuclease [Ketogulonicigenium vulgare Y25] gi|308755831|gb|ADO43760.1| 3'-5' exonuclease [Ketogulonicigenium vulgare Y25] Length = 227 Score = 36.1 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 21/74 (28%), Gaps = 5/74 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ET GL+ DR+ V++ + + P R A L Sbjct: 44 IAIDCETMGLNPHRDRLC---LVQISGG--DGNAHMIQISPGQRSAPNLARMLEDANILK 98 Query: 70 LKDKPSFSSIFSEF 83 L F Sbjct: 99 LFHYGRFDIAAMYH 112 >gi|289547982|ref|YP_003472970.1| exonuclease RNase T and DNA polymerase III [Thermocrinis albus DSM 14484] gi|289181599|gb|ADC88843.1| Exonuclease RNase T and DNA polymerase III [Thermocrinis albus DSM 14484] Length = 208 Score = 36.1 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLC 49 +V D ET+ D K ++ +GA+++++ + T F V + Sbjct: 38 FVVLDTETS--DIKGTNLLSVGALKVVNLTLDLSTAFHVTVK 77 >gi|149190503|ref|ZP_01868773.1| ATP-dependent 26S proteasome regulatory subunit [Vibrio shilonii AK1] gi|148835627|gb|EDL52594.1| ATP-dependent 26S proteasome regulatory subunit [Vibrio shilonii AK1] Length = 232 Score = 36.1 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL 35 + K + I+ D+ET G +S N I+ IGAV Sbjct: 1 METKKTKHIMIDLETMG-NSSNAAIVSIGAVVFD 33 >gi|49484243|ref|YP_041467.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA252] gi|49242372|emb|CAG41084.1| putative exonuclease [Staphylococcus aureus subsp. aureus MRSA252] Length = 310 Score = 36.1 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 7/172 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET ++ + E+ AV L+ + + ++ P + + + K+H I ++ + Sbjct: 8 VLDFET--MNEHMNSPCEV-AVSLIKDLSIVKVYSSYINPPNNRYNLKNAKIHKIPEDVI 64 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P + + +++ IAHNA FD+ + + +D+++I Sbjct: 65 LKAPK-YPDIYQEILYLLKESHLIIAHNALFDISVLKNTNNYYDLPVP-NFMYVDSINIF 122 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R H S L +LC Y I H A D LS + I + + Sbjct: 123 RSFHAISSFKLENLCSLY--DIDKEKLHSAKFDVLALSKMLISLAKNNKHYS 172 >gi|325928185|ref|ZP_08189394.1| Exodeoxyribonuclease I subunit C [Xanthomonas perforans 91-118] gi|325541481|gb|EGD13014.1| Exodeoxyribonuclease I subunit C [Xanthomonas perforans 91-118] Length = 481 Score = 36.1 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 3/118 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65 + +D+ET G D + RI + AV F+ P + + Sbjct: 5 FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 L++ + + F+ + + +N+ N Sbjct: 65 PQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYEREW 122 >gi|291298946|ref|YP_003510224.1| exonuclease RNase T and DNA polymerase III [Stackebrandtia nassauensis DSM 44728] gi|290568166|gb|ADD41131.1| Exonuclease RNase T and DNA polymerase III [Stackebrandtia nassauensis DSM 44728] Length = 191 Score = 36.1 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 13/21 (61%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D E TGLD + D +IEI + Sbjct: 3 IDCEMTGLDLQRDALIEIAVL 23 >gi|229592327|ref|YP_002874446.1| exonuclease I [Pseudomonas fluorescens SBW25] gi|229364193|emb|CAY51862.1| exodeoxyribonuclease I [Pseudomonas fluorescens SBW25] Length = 475 Score = 36.1 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 20/196 (10%), Positives = 56/196 (28%), Gaps = 11/196 (5%) Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTG++ ++DR +++ + + ++ ++ P+ H + Sbjct: 8 DYETTGINPRSDRPLQVAGIRTDLELNEIGAPVNLYCQPSDDILP------HPVACAITG 61 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 P+ + F + +A G+ D + Sbjct: 62 ITPAILAEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191 + S + ++ + Y + D + ++ + + I+ G + Sbjct: 122 QGGNSRWDLIDVVRTAYALRPEGIE--WPQQDGRVTLK--LERLTEANGIDHGQAHDALS 177 Query: 192 FFKEEKKTVPNISLLK 207 + I + Sbjct: 178 DVRATIALARRIREKQ 193 >gi|154244026|ref|YP_001414984.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2] gi|154158111|gb|ABS65327.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2] Length = 206 Score = 36.1 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 3/28 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDY 37 + D ET GL+ DR+ V+L + Sbjct: 20 VAIDTETMGLNPFRDRLC---LVQLSNG 44 >gi|21242349|ref|NP_641931.1| exonuclease I [Xanthomonas axonopodis pv. citri str. 306] gi|21107784|gb|AAM36467.1| exodeoxyribonuclease I [Xanthomonas axonopodis pv. citri str. 306] Length = 481 Score = 36.1 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 3/118 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65 + +D+ET G D + RI + AV F+ P + + Sbjct: 5 FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 L++ + + F+ + + +N+ N Sbjct: 65 PQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYEREW 122 >gi|78047196|ref|YP_363371.1| exonuclease I [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035626|emb|CAJ23314.1| exodeoxyribonuclease I [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 481 Score = 36.1 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 3/118 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65 + +D+ET G D + RI + AV F+ P + + Sbjct: 5 FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 L++ + + F+ + + +N+ N Sbjct: 65 PQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYEREW 122 >gi|150400976|ref|YP_001324742.1| exonuclease RNase T and DNA polymerase III [Methanococcus aeolicus Nankai-3] gi|150013679|gb|ABR56130.1| Exonuclease RNase T and DNA polymerase III [Methanococcus aeolicus Nankai-3] Length = 175 Score = 36.1 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 51/174 (29%), Gaps = 14/174 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVE---LLDYSKTNRTFQVF------LCPNGRKNSPEAL 60 I+ D ET + +IE+GA++ + K F + + + Sbjct: 2 IILDFETNTRKPYD--VIEVGAIKVAFIDGEYKKIDAFHRYYYSKYGINQRALEVHRLTP 59 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + F F + +AHN F++ ++ + N Sbjct: 60 QKIKNLRGGENYAKYFRQDNEFI--EFCQDCNTLVAHNITFELRYLGDMVTFDNHICTMA 117 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++ R + + C YGI H A+ D +V M Sbjct: 118 QNKHIVRAVDIRGGLKPPKLIEA-CNHYGIDFDEEQYHSAIYDVTKTLEVLNCM 170 >gi|307195065|gb|EFN77118.1| hypothetical protein EAI_12370 [Harpegnathos saltator] Length = 541 Score = 35.7 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 7/41 (17%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50 ++FD+ET+G D I+++ AV + F V++ P Sbjct: 481 VIFDLETSGRGRNAD-ILQLAAVANDN------VFSVYIEP 514 >gi|255596951|ref|XP_002536656.1| conserved hypothetical protein [Ricinus communis] gi|223518960|gb|EEF25726.1| conserved hypothetical protein [Ricinus communis] Length = 216 Score = 35.7 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 35/165 (21%), Gaps = 1/165 (0%) Query: 8 RKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + +FD E TG N I E+ + + + + + P Sbjct: 19 RHVTIFDTEGTGFRGPNFGITEVACFTVAPNATSGVLYGHLINPEETITPQAVKITGITQ 78 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + F I+ + Sbjct: 79 AMVSGAELWSLRYAALFKQMAASHWIGGFNSATYDLHAVIDMNAKYGMPFEKFEYSFDVR 138 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + SR S H A D+ L ++ Sbjct: 139 TLHHQLAASKSRAGNLVEIAALYGVKPQGSLHRATADTILTVELL 183 >gi|58426647|gb|AAW75684.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae KACC10331] Length = 502 Score = 35.7 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 1/49 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56 + +D+ET G D + RI + AV F+ P Sbjct: 26 FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLP 74 >gi|84623964|ref|YP_451336.1| exonuclease I [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898991|ref|YP_201069.2| exonuclease I [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367904|dbj|BAE69062.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 481 Score = 35.7 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 1/49 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56 + +D+ET G D + RI + AV F+ P Sbjct: 5 FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLP 53 >gi|309362083|emb|CAP28760.2| CBR-NPP-10 protein [Caenorhabditis briggsae AF16] Length = 1684 Score = 35.7 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 9/127 (7%), Positives = 25/127 (19%), Gaps = 3/127 (2%) Query: 43 TFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA---HNA 99 +F +L + + + F + + I + Sbjct: 363 SFSKYLKIFDCLADYKQCFRPTRWYRRKFIRKHSNEYHWWFLVWIKTSHKHGIQLWRQST 422 Query: 100 KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 + E + H + + G T + + Sbjct: 423 NYYECIWFHEQHWWWSFRKQCCQARRPFRFNYYWHYWRWSFRLATSSHIGRTFRFKRPNH 482 Query: 160 ALLDSHL 166 A + + Sbjct: 483 AAIKHWI 489 >gi|291559233|emb|CBL38033.1| Predicted 3'-5' exonuclease related to the exonuclease domain of PolB [butyrate-producing bacterium SSC/2] Length = 310 Score = 35.7 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 18/37 (48%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS 38 + N + + FDIETTGL + I IG ++ Sbjct: 1 MEHNIQQSLFFDIETTGLSADISAITVIGCCDMDGNV 37 >gi|221102082|ref|XP_002161173.1| PREDICTED: similar to Oligoribonuclease, mitochondrial [Hydra magnipapillata] Length = 184 Score = 35.7 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 15/25 (60%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD D IIE+ + Sbjct: 8 RLVWVDLEMTGLDVDKDHIIEMAVL 32 >gi|268578589|ref|XP_002644277.1| C. briggsae CBR-CRN-4 protein [Caenorhabditis briggsae] gi|187027645|emb|CAP32715.1| CBR-CRN-4 protein [Caenorhabditis briggsae AF16] Length = 298 Score = 35.7 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 7/129 (5%) Query: 11 VFDIETTGLDSKND---RIIEIGAVELLDYSKT---NRTFQVFLCPNGRKN-SPEALKLH 63 + D ETT D II+ V L +KT F F+ P S +L Sbjct: 13 ILDFETTSGGKNRDYPTEIIQFSVVPLDVKAKTMLEGIAFNKFVRPVINPTLSEHCAELT 72 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI E L +F ++ +F ++ + + D + + + + Sbjct: 73 GIKQESLNSADTFLVVYKQFLEWLQKNGFQERHFAIVSDSRQDMWRIAQYQFRLVRETMP 132 Query: 124 IDTLSIARR 132 Sbjct: 133 SMFRQWINI 141 >gi|265763451|ref|ZP_06092019.1| predicted protein [Bacteroides sp. 2_1_16] gi|299145853|ref|ZP_07038921.1| putative DNA polymerase III, alpha subunit, Gram-positive type [Bacteroides sp. 3_1_23] gi|263256059|gb|EEZ27405.1| predicted protein [Bacteroides sp. 2_1_16] gi|298516344|gb|EFI40225.1| putative DNA polymerase III, alpha subunit, Gram-positive type [Bacteroides sp. 3_1_23] Length = 257 Score = 35.7 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 55/188 (29%), Gaps = 12/188 (6%) Query: 12 FDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH--GITD 67 D ET GLD ++ +I AV + D +T + ++ P ++ K Sbjct: 16 LDFETGGLDCQDCACTQIAIHAVRI-DTFETIDRYVKYISPYNKQPDKGVAKRKVLKSKF 74 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI------NKDPLDPS 121 + ++P + + E + + K + +++ N P Sbjct: 75 DKDDEQPMKYEEKALTYSAITMDMLESLGMDIKQVAAEVIDFIRKNILSKGRNIKPFLIG 134 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA-LLDSHLLSDVYIKMMVGGSQ 180 + I ++ + K +D+ +L + + + G S Sbjct: 135 QNIGFDIGFMQQLMEYGGQMKEFAKLMRGETDFYGHFQPLYIDTIVLGQLALSHLDGMSS 194 Query: 181 INFGFKTN 188 Sbjct: 195 YKLEIMAE 202 >gi|291526285|emb|CBK91872.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Eubacterium rectale DSM 17629] Length = 724 Score = 35.7 bits (80), Expect = 5.5, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 48/161 (29%), Gaps = 17/161 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGLD + + P+ + ++ + Sbjct: 86 VLDVETTGLD-------------VYNDILVGI---CLYNPDLPSF-YVPFNHTDLQNKRV 128 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + + + + + + + I HN KFD + + + + + I + Sbjct: 129 EGQMTEEECKAVMLPYLANGSLKCINHNIKFDDKVVTFQWGQRIANVWWDTNIAGWVLNE 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 KH + G + +++ D++ Sbjct: 189 NEKHRLKPMYNKYILNGEGSDEDFGDLFEGIPCNYIPIDIF 229 >gi|184154831|ref|YP_001843171.1| hypothetical protein LAF_0355 [Lactobacillus fermentum IFO 3956] gi|183226175|dbj|BAG26691.1| hypothetical protein [Lactobacillus fermentum IFO 3956] gi|299782901|gb|ADJ40899.1| Putative uncharacterized protein [Lactobacillus fermentum CECT 5716] Length = 361 Score = 35.7 bits (80), Expect = 5.5, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 56/196 (28%), Gaps = 3/196 (1%) Query: 12 FDIE-TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDEF 69 D+E T ++ +EIG V+ + K + F F+ + + + Sbjct: 19 LDLEFATHKKTREHLPLEIGVVKYQNGRKVGKQFHRFVYWADAEADDILRGMDYANVTYK 78 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 K F + + N D+ + ++ +D + Sbjct: 79 TYKKQGQWDKIVADLLNFIDFSLPIGGWNVHGDLQVLLEAIKNHGGPLVDEKAVCCFEVD 138 Query: 130 ARRKHPSSRNDLNSLCKRYG-ITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + SL + + H AL D L + VY ++ ++ Sbjct: 139 ELVSWLGELPNKPSLRGVGRLLGFDVSNMHHALSDVLLTAQVYDYLVALPEIASWKKDPT 198 Query: 189 EDRFFKEEKKTVPNIS 204 + KE +T Sbjct: 199 NTKSTKEAGRTKATKK 214 >gi|104780361|ref|YP_606859.1| exonuclease I [Pseudomonas entomophila L48] gi|95109348|emb|CAK14048.1| exonuclease I [Pseudomonas entomophila L48] Length = 476 Score = 35.7 bits (80), Expect = 5.5, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALK 61 D ETTG++ + DR +++ V D ++ ++ P+ A Sbjct: 9 DYETTGINPRCDRPLQMAGVRTDLDLNEIEAPINLYCRPSDDILPHPAAC 58 >gi|213691488|ref|YP_002322074.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522949|gb|ACJ51696.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457562|dbj|BAJ68183.1| oligoribonuclease [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 216 Score = 35.7 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 25/203 (12%), Positives = 54/203 (26%), Gaps = 4/203 (1%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R I D E TGLD D ++E+ V D + + + P+ + + + Sbjct: 16 RLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDFVIKPSQKAVDHMNDFVRNM 75 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + E + + + +K LD Sbjct: 76 HTRSGLINEWGHGLSLEEAEQKVTDYVLRFTP--EGVRPLLAGNTIGSDKKFLDHYMPDL 133 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + R S + + + K+G + + ++ Sbjct: 134 MSHLHYRSVDVSTLKELARRWYPAVYENRPPKNGGHRALADIIESLDELRYYRKAFMAPV 193 Query: 186 KTNEDRFFKEEKKTVPNISLLKR 208 +D K + + S+L + Sbjct: 194 PGPDDAASKAIAADIVSTSILNK 216 >gi|302388533|ref|YP_003824355.1| Exonuclease RNase T and DNA polymerase III [Clostridium saccharolyticum WM1] gi|302199161|gb|ADL06732.1| Exonuclease RNase T and DNA polymerase III [Clostridium saccharolyticum WM1] Length = 330 Score = 35.7 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 53/182 (29%), Gaps = 16/182 (8%) Query: 7 MR-KIVFDIE----TTGLD-SKND---RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 M+ IV D+E G D + IIEIGAV+L + + F+ + P R Sbjct: 1 MKDYIVLDLEWNQSAGGKDEAVEHLPFEIIEIGAVKLNEAMEEVGEFKRLIRP--RIYPE 58 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 K+ +T K F E F E + + Sbjct: 59 LHEKILEVTHMDEKTLIQEGRNFEEAVKDFLTWCGEEAVFCTWGSMDLTELQRNMAYYGI 118 Query: 118 LDPS-----RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 L+P + + + R H AL D+H + Sbjct: 119 LNPFPKPFLYYDVQKLYSLLYGDGKDRQSLDIAVLEQQVMEDRPFHRALDDAHYTGRILY 178 Query: 173 KM 174 KM Sbjct: 179 KM 180 >gi|269102608|ref|ZP_06155305.1| exodeoxyribonuclease I [Photobacterium damselae subsp. damselae CIP 102761] gi|268162506|gb|EEZ41002.1| exodeoxyribonuclease I [Photobacterium damselae subsp. damselae CIP 102761] Length = 473 Score = 35.7 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 32/128 (25%), Gaps = 3/128 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 MI+KN+ D ET G DR + + D + ++ P Sbjct: 1 MIKKNEPSLYWIDYETFGASPATDRPCQFAGIRTDMDLNIIGEPLVIYCKPPHDYLPSPE 60 Query: 60 LKLHGITDEFLKDKPSFSSIFS--EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 L ++ S + ++ N + +N + N Sbjct: 61 ACLITGITPQEANEKGLSEPEFIARIHEELSKPNTCVVGYNNVRFDDEVTRYTLYRNFYD 120 Query: 118 LDPSRIID 125 Sbjct: 121 PYGWSWQQ 128 >gi|330802757|ref|XP_003289380.1| hypothetical protein DICPUDRAFT_56059 [Dictyostelium purpureum] gi|325080536|gb|EGC34087.1| hypothetical protein DICPUDRAFT_56059 [Dictyostelium purpureum] Length = 187 Score = 35.7 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 15/25 (60%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV 32 R + D+E TGLD D I+E+ + Sbjct: 13 RIVWVDLEMTGLDITKDCILEMACI 37 >gi|302841163|ref|XP_002952127.1| hypothetical protein VOLCADRAFT_92718 [Volvox carteri f. nagariensis] gi|300262713|gb|EFJ46918.1| hypothetical protein VOLCADRAFT_92718 [Volvox carteri f. nagariensis] Length = 1059 Score = 35.7 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 40/156 (25%), Gaps = 15/156 (9%) Query: 37 YSKTNRTFQVFLCPNGR----KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA 92 TF + PNGR + P L GIT + L P + F + ++ Sbjct: 7 RQLIGDTFSSLVNPNGRGRPVQMDPRVTSLTGITPDMLLHAPGEPWVALAFLCWLYQRCR 66 Query: 93 EWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG--- 149 + L + S R G Sbjct: 67 AGGGVRPALVGHNLRVYDSPFLARMLARQGCLVPYSWCMVDSLRLARRWKLWSSRGGGDF 126 Query: 150 --------ITISHRSKHGALLDSHLLSDVYIKMMVG 177 I R +H AL D+ + DV M+ Sbjct: 127 KLQSLRELYNIPRRDEHRALPDALVTVDVLAAMVRH 162 >gi|325971901|ref|YP_004248092.1| exodeoxyribonuclease I [Spirochaeta sp. Buddy] gi|324027139|gb|ADY13898.1| Exodeoxyribonuclease I [Spirochaeta sp. Buddy] Length = 471 Score = 35.7 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 18/172 (10%), Positives = 35/172 (20%), Gaps = 3/172 (1%) Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ET GLDS+ DRI + + + ++ + Sbjct: 14 DLETFGLDSRYDRIAQFAGQRTDLNLNPIGEPIVLYCKLSDDYLPDPLSCTITSITPQEV 73 Query: 72 DKPSFSSIF--SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K F++ N N N + S Sbjct: 74 NKKGICESDLIDRINSEFSKPNTVVAGFNTIRFDDEFIRNALYRNFLDPYKREWDNYCSR 133 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + + L I+ + + Sbjct: 134 WDIIDLVRAAYDLRPEGIAWPPRKEETGNPTFRLVALTQANNIEQVGAHDAL 185 >gi|299472868|emb|CBN80437.1| EsV-1-139 [Ectocarpus siliculosus] Length = 269 Score = 35.7 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 24/198 (12%), Positives = 49/198 (24%), Gaps = 2/198 (1%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTGLD+ + I+EI V D ++ + V P+ + + Sbjct: 46 IDMETTGLDTDTNLILEIVMVVTDRDLNEIDSMRLVLHHPHSILLARSSAWCRRKFCHRR 105 Query: 71 K-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + F + + W + + +I R + Sbjct: 106 EGGNGLFEACHFSALSHHEAEYRMWNFFDHYSKDVGGRYDTTQITSSQPFFDRTLGANGT 165 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 +SR +R + D L + + T Sbjct: 166 FLGASDASRCRHQQQPRRSNYKKCLLAGSTVYFDRIFLLKYFPCLKTFFHYRVVDVSTPL 225 Query: 190 DRFFKEEKKTVPNISLLK 207 + + + Sbjct: 226 EMVRRWRPDVAAKLPRRN 243 >gi|224373300|ref|YP_002607672.1| DNA polymerase III PolC-type [Nautilia profundicola AmH] gi|223589694|gb|ACM93430.1| DNA polymerase III PolC-type [Nautilia profundicola AmH] Length = 255 Score = 35.7 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48 V DIE ++IEIGAV++ + TF+ + Sbjct: 66 YCVVDIEVNNSKPNIGQVIEIGAVKIKNLKIV-DTFEFLI 104 >gi|320163436|gb|EFW40335.1| REXO2 protein [Capsaspora owczarzaki ATCC 30864] Length = 180 Score = 35.7 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 15/33 (45%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40 R I D+E TGLD + IIE+ + Sbjct: 7 RMIWVDLEMTGLDVSTETIIEMACIVTDSRGNI 39 >gi|296126676|ref|YP_003633928.1| exonuclease [Brachyspira murdochii DSM 12563] gi|296018492|gb|ADG71729.1| exonuclease [Brachyspira murdochii DSM 12563] Length = 287 Score = 35.7 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 5/47 (10%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGA-----VELLDYSKTNRTFQVFLC 49 + + DIETTG+ + IG +++ + + F ++ Sbjct: 88 KIVFLDIETTGIKPSKADVTVIGCYDGKEMKVFVHGRNENEFLDYIK 134 >gi|90022321|ref|YP_528148.1| oligoribonuclease [Saccharophagus degradans 2-40] gi|89951921|gb|ABD81936.1| Exonuclease [Saccharophagus degradans 2-40] Length = 181 Score = 35.7 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 11/19 (57%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL D IIEI Sbjct: 11 IDLEMTGLVPDRDVIIEIA 29 >gi|241896984|ref|NP_001155946.1| exoribonuclease 1 [Acyrthosiphon pisum] Length = 340 Score = 35.7 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 17/172 (9%) Query: 9 KIVFDIETTGL--DSK--NDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN-SPEALKL 62 +V DIE T + IIE AV + K FQ F+ P+ S +KL Sbjct: 95 FVVIDIEATCTENNPADYKFEIIEFPAVLVDAKKRKIIDHFQAFVKPSINPKLSEFCIKL 154 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT + + + SF + F + E ++G + + Sbjct: 155 TGITQDQIDNADSFEVCLTRFTKWLEE-----------HELGIKHKFSIVTDGPFDMARF 203 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++ +P ++ K + + ++ + ++ M Sbjct: 204 LYGQCLMSEIPYPKFATKWINIRKVFKAFYFTKQVKYSVPCNLNAMLTFLDM 255 >gi|118602911|ref|YP_904126.1| exodeoxyribonuclease I subunit C [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567850|gb|ABL02655.1| Exodeoxyribonuclease I subunit C [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 471 Score = 35.7 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 15/126 (11%), Positives = 30/126 (23%), Gaps = 6/126 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D ET G+ K DRI + + + + P Sbjct: 8 DYETFGISPKIDRISQFAGIRTDENFNIIDEQMFYCKPTNDCLPSP-----EACFITGIS 62 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 +F + +A++ N G+ + ID + + Sbjct: 63 PQLCEQKGMIEHEFIKKIHAQFSTSNTCIV-GYNSIRFDDEFTRHTLYRNFIDPYTWHWQ 121 Query: 133 KHPSSR 138 + Sbjct: 122 NGNTRW 127 >gi|15640368|ref|NP_229995.1| oligoribonuclease [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591589|ref|ZP_01678842.1| oligoribonuclease [Vibrio cholerae 2740-80] gi|121730775|ref|ZP_01682865.1| oligoribonuclease [Vibrio cholerae V52] gi|147673115|ref|YP_001218609.1| oligoribonuclease [Vibrio cholerae O395] gi|227080553|ref|YP_002809104.1| oligoribonuclease [Vibrio cholerae M66-2] gi|229506863|ref|ZP_04396371.1| oligoribonuclease [Vibrio cholerae BX 330286] gi|229508668|ref|ZP_04398162.1| oligoribonuclease [Vibrio cholerae B33] gi|229516050|ref|ZP_04405501.1| oligoribonuclease [Vibrio cholerae RC9] gi|229606377|ref|YP_002877025.1| oligoribonuclease [Vibrio cholerae MJ-1236] gi|254851651|ref|ZP_05241001.1| oligoribonuclease [Vibrio cholerae MO10] gi|255747141|ref|ZP_05421084.1| oligoribonuclease [Vibrio cholera CIRS 101] gi|262149017|ref|ZP_06028162.1| oligoribonuclease [Vibrio cholerae INDRE 91/1] gi|262166933|ref|ZP_06034653.1| oligoribonuclease [Vibrio cholerae RC27] gi|298501303|ref|ZP_07011100.1| oligoribonuclease [Vibrio cholerae MAK 757] gi|11133789|sp|Q9KV17|ORN_VIBCH RecName: Full=Oligoribonuclease gi|172047716|sp|A5F3M7|ORN_VIBC3 RecName: Full=Oligoribonuclease gi|9654757|gb|AAF93514.1| oligoribonuclease [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546555|gb|EAX56757.1| oligoribonuclease [Vibrio cholerae 2740-80] gi|121627652|gb|EAX60322.1| oligoribonuclease [Vibrio cholerae V52] gi|146314998|gb|ABQ19537.1| oligoribonuclease [Vibrio cholerae O395] gi|227008441|gb|ACP04653.1| oligoribonuclease [Vibrio cholerae M66-2] gi|227012197|gb|ACP08407.1| oligoribonuclease [Vibrio cholerae O395] gi|229346953|gb|EEO11920.1| oligoribonuclease [Vibrio cholerae RC9] gi|229354303|gb|EEO19232.1| oligoribonuclease [Vibrio cholerae B33] gi|229355968|gb|EEO20887.1| oligoribonuclease [Vibrio cholerae BX 330286] gi|229369032|gb|ACQ59455.1| oligoribonuclease [Vibrio cholerae MJ-1236] gi|254847356|gb|EET25770.1| oligoribonuclease [Vibrio cholerae MO10] gi|255735190|gb|EET90592.1| oligoribonuclease [Vibrio cholera CIRS 101] gi|262024638|gb|EEY43319.1| oligoribonuclease [Vibrio cholerae RC27] gi|262031207|gb|EEY49826.1| oligoribonuclease [Vibrio cholerae INDRE 91/1] gi|297539994|gb|EFH76058.1| oligoribonuclease [Vibrio cholerae MAK 757] Length = 181 Score = 35.7 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +IIE+ Sbjct: 11 IDLEMTGLDPEMHKIIEMA 29 >gi|240273598|gb|EER37118.1| oligoribonuclease [Ajellomyces capsulatus H143] Length = 189 Score = 35.7 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 13/20 (65%) Query: 12 FDIETTGLDSKNDRIIEIGA 31 D E TGL+ + D+I++I Sbjct: 13 IDCEMTGLNHRTDKILQICC 32 >gi|242014471|ref|XP_002427913.1| 3' histone mRNA exonuclease, putative [Pediculus humanus corporis] gi|212512397|gb|EEB15175.1| 3' histone mRNA exonuclease, putative [Pediculus humanus corporis] Length = 386 Score = 35.7 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 71/216 (32%), Gaps = 13/216 (6%) Query: 9 KIVFDIETTGLDSKNDR--IIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHG 64 +V D E T + K DR IIE AV + K F+++ P S ++L G Sbjct: 105 YVVIDFEATCDNKKIDRQEIIEFPAVLVNSKKQKIEDCFRMYCKPRINPKLSQYCMELTG 164 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQ--------NAEWIAHNAKFDVGFINAELQRINKD 116 IT E + + +F + S + ++ + A N ++ Sbjct: 165 ITQEQVDNAETFDKVLSHYNNWLKKHNLGTKNKRYAVVTDGNWDMSKFLVSQCHYSNVPI 224 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL-LDSHLLSDVYIKMM 175 P ++ + + N + + + + D+ ++ + +KM+ Sbjct: 225 PKWGKTWVNLKKTFKNFYQKGENRICLKTMLEMLNMEFIGRPHCGLDDAKNIARILLKMI 284 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 GS I + R K + + R Sbjct: 285 YDGSNIQINERLASVRRVNINKNINDDDTEDSRTTL 320 >gi|188587656|ref|YP_001921717.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum E3 str. Alaska E43] gi|188497937|gb|ACD51073.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum E3 str. Alaska E43] Length = 204 Score = 35.7 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 42/137 (30%), Gaps = 20/137 (14%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQVFL---CP---NGRKNS 56 M+ + FD ETT + + I ++ + + T + F + P S Sbjct: 1 MKLLFFDTETTSIKPGS--ICQLSYITVDASSKPQITTGKNFFFTVDEMNPSAQEIHGFS 58 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 E L F P F F E HN FD+ F+ EL + +D Sbjct: 59 LEKLYELSEGQYFEDLVPEFFKDFIEADFLI--------GHNVNFDIRFLKHELSLLGED 110 Query: 117 PLDPSRIIDTLSIARRK 133 L + Sbjct: 111 FLPKHSFCTMMYYKDIC 127 >gi|300782107|ref|YP_003762398.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32] gi|299791621|gb|ADJ41996.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32] Length = 461 Score = 35.7 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 V DI TTGL ++ R++E+ AV + + Sbjct: 22 VVDIRTTGL--RSGRVVELAAVRVSADGSFGGELTTLVD 58 >gi|289812558|ref|ZP_06543187.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 96 Score = 35.7 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL + I+EI ++ + + P + EA+ +HGIT+E Sbjct: 26 YLFIDTETTGLG-DDAEIVEICIIDSHGFIM----LNTLIKP-TKPIPDEAIAIHGITNE 79 Query: 69 FLKDKPSFSSIF 80 + P+++ I+ Sbjct: 80 MVAFAPAWTDIW 91 >gi|229062584|ref|ZP_04199894.1| Sporulation inhibitor KapD [Bacillus cereus AH603] gi|228716687|gb|EEL68383.1| Sporulation inhibitor KapD [Bacillus cereus AH603] Length = 207 Score = 35.7 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 55/183 (30%), Gaps = 16/183 (8%) Query: 8 RKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SP 57 R + D E T G + IIE+G V ++ K T+ + P + + Sbjct: 5 RFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSSHVRPKTFPSLTD 60 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 K GI E + SF + + ++ + + P Sbjct: 61 RCKKFLGIKQEVVDKGVSFHELVEKLAEYEKRCKPTIVTWGNMDMKVLKQNCEMAGVEFP 120 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +L + ++ L + YG KH LD + + K++ Sbjct: 121 FFGQCRDLSLEYKKFFGERNQTGLWKAIEAYGKA--GTGKHHCALDDAMTTYNIFKLVEK 178 Query: 178 GSQ 180 + Sbjct: 179 DKE 181 >gi|152985597|ref|YP_001350999.1| oligoribonuclease [Pseudomonas aeruginosa PA7] gi|166216274|sp|A6VD64|ORN_PSEA7 RecName: Full=Oligoribonuclease gi|150960755|gb|ABR82780.1| oligoribonuclease [Pseudomonas aeruginosa PA7] Length = 180 Score = 35.7 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 12/27 (44%), Positives = 15/27 (55%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +N I D+E TGLD D IIE+ Sbjct: 2 QNPQNLIWIDLEMTGLDPDRDVIIEMA 28 >gi|28210675|ref|NP_781619.1| hypothetical protein CTC00967 [Clostridium tetani E88] gi|28203113|gb|AAO35556.1| conserved protein [Clostridium tetani E88] Length = 274 Score = 35.7 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 3/86 (3%) Query: 1 MIRKNKMRKIV-FDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 + ++ M +I FDIETTG D +N+ I I +G E + + L Sbjct: 25 IFKRYYMDEIAYFDIETTGFDRENNNIILISLGWYEDYHNFIIKQYYAESLQEEYDILKS 84 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEF 83 + + +F F ++ Sbjct: 85 FGEDIKDFHVWSSYNGIAFDEPFIKY 110 >gi|310780268|ref|YP_003968600.1| Exodeoxyribonuclease I [Ilyobacter polytropus DSM 2926] gi|309749591|gb|ADO84252.1| Exodeoxyribonuclease I [Ilyobacter polytropus DSM 2926] Length = 487 Score = 35.7 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 59/217 (27%), Gaps = 2/217 (0%) Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNR-TFQVFLCPNGRKNSPEALKLHGITDEFL 70 D ET G D K DRI + V D+ + + + + N ++ E Sbjct: 9 DYETFGADPKRDRISQFAGVRTDMDFKVVDEMVYYCKVAEDYLPNPEASIITGITPKESN 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + + + + + F ++ I +N+ + L + S Sbjct: 69 EKGITENELAEILFKEFTKEGTVTIGYNSIKFDDEVTRNLFYRTFRDPYEREWKNNCSRW 128 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 + L + + + + + + + Sbjct: 129 DFMRAILGVYVMKPELLKWPLKDDGRPSFRLEELSIANGIIHENAHDAKSDVYATIGLAE 188 Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 K+ L+ + + ++K+EL H Sbjct: 189 LISKKSPNVFDYFFNLRDKDFVKSELSKDELFLHIDF 225 >gi|282882795|ref|ZP_06291400.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] gi|281297206|gb|EFA89697.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B] Length = 299 Score = 35.7 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 14/20 (70%), Positives = 15/20 (75%) Query: 14 IETTGLDSKNDRIIEIGAVE 33 IETTGL KND II IG V+ Sbjct: 19 IETTGLSIKNDVIIAIGIVK 38 >gi|195449894|ref|XP_002072273.1| GK22765 [Drosophila willistoni] gi|194168358|gb|EDW83259.1| GK22765 [Drosophila willistoni] Length = 190 Score = 35.7 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 1/56 (1%) Query: 13 DIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 D+E TGLD + D+I+E+ + D + + + Sbjct: 21 DLEMTGLDIQKDKILEVSCLITDKDLNIQSNGLSFAINHPQEVYEQMNEWCIKQHY 76 >gi|321471838|gb|EFX82810.1| hypothetical protein DAPPUDRAFT_195366 [Daphnia pulex] Length = 228 Score = 35.7 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 6/90 (6%) Query: 8 RKIVFDIETTGLDSKN----DRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN-SPEALK 61 R +V D E T + IIE + + + +T TF ++ P +P Sbjct: 36 RLLVLDFEATCDSQRGTIRPQEIIEFPVLNVETNGFETVGTFHRYVKPQVHPTLTPFCTS 95 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91 L GI + ++D + +F + Q+ Sbjct: 96 LTGIIQDMVEDAAPLKEVMEDFHKWLLSQH 125 >gi|281202353|gb|EFA76558.1| putative RNase III [Polysphondylium pallidum PN500] Length = 164 Score = 35.7 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 8/155 (5%) Query: 10 IVFDIETT---GLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63 +V D E T G IIE VE+ TF+ ++ P S +L Sbjct: 9 VVLDFEATCENGTKIAKQEIIEFPSVIVEVETCKIV-DTFREYVKPVHNPRLSAFCTELT 67 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI ++ + +FS + + + N + + V Sbjct: 68 GIQQAWVDEAQTFSVVMENHRQWLIK-NQLLLPSGERSPVNTFTFLTCGDWDLNQMLPVQ 126 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158 L+ + K PS + ++ K + ++ Sbjct: 127 YKFLAGSDGKWPSYFCEWINIKKSFEQHYKVPARG 161 >gi|225028307|ref|ZP_03717499.1| hypothetical protein EUBHAL_02579 [Eubacterium hallii DSM 3353] gi|224954353|gb|EEG35562.1| hypothetical protein EUBHAL_02579 [Eubacterium hallii DSM 3353] Length = 210 Score = 35.7 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 27/73 (36%) Query: 25 RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFW 84 II++GAV L + K T ++ P L GI +K+ P Sbjct: 18 EIIQVGAVLLDEEYKEIGTLCQYVHPEFGILDYFITNLTGIEKGQIKNAPKLKDALIHMA 77 Query: 85 DFFNEQNAEWIAH 97 D+ E+ + A Sbjct: 78 DWLGEREYKVFAW 90 >gi|187933667|ref|YP_001886759.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum B str. Eklund 17B] gi|187721820|gb|ACD23041.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum B str. Eklund 17B] Length = 204 Score = 35.7 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 42/137 (30%), Gaps = 20/137 (14%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQVFL---CP---NGRKNS 56 M+ + FD ETT + + I ++ + + T + F + P S Sbjct: 1 MKLLFFDTETTSIKPGS--ICQLSYITVDASSKPQITTGKNFFFTVDEMNPSAQEIHGFS 58 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 E L F P F F E HN FD+ F+ EL + +D Sbjct: 59 LEKLYELSEGQYFEDLVPEFFKDFIEADFLI--------GHNVNFDIRFLKHELSLLGED 110 Query: 117 PLDPSRIIDTLSIARRK 133 L + Sbjct: 111 FLPKHSFCTMIYYKDIC 127 >gi|330811421|ref|YP_004355883.1| exodeoxyribonuclease I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379529|gb|AEA70879.1| Exodeoxyribonuclease I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 477 Score = 35.7 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 13 DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALK 61 D ETTG++ + DR +++ + + ++ + ++ P+ A Sbjct: 8 DYETTGINPRCDRPLQVAGIRTDFELNEIDEPVNLYCRPSDDILPHPAAC 57 >gi|15927574|ref|NP_375107.1| ATP-dependent helicase [Staphylococcus aureus subsp. aureus N315] gi|29028621|ref|NP_803310.1| Pol III-like ATP dependent helicase [Staphylococcus phage phi 12] gi|30043986|ref|NP_835521.1| probable ATP-dependent helicase [Staphylococcus phage phiN315] gi|87161004|ref|YP_494621.1| putative exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195288|ref|YP_500092.1| exonuclease family protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|118725058|ref|YP_908794.1| probable ATP-dependent helicase [Staphylococcus phage phiNM3] gi|151222134|ref|YP_001332956.1| phage exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|161510224|ref|YP_001575883.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253315032|ref|ZP_04838245.1| putative exonuclease [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253729784|ref|ZP_04863949.1| DNA polymerase III epsilon subunit family exonuclease [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|258413674|ref|ZP_05681948.1| phage exonuclease [Staphylococcus aureus A9763] gi|258425109|ref|ZP_05687979.1| phage exonuclease [Staphylococcus aureus A9635] gi|258434316|ref|ZP_05688717.1| exonuclease family protein [Staphylococcus aureus A9299] gi|258447837|ref|ZP_05695972.1| phage exonuclease [Staphylococcus aureus A6224] gi|258452362|ref|ZP_05700372.1| ATP-dependent helicase [Staphylococcus aureus A5948] gi|282917349|ref|ZP_06325104.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus D139] gi|282928799|ref|ZP_06336392.1| exodeoxyribonuclease [Staphylococcus aureus A10102] gi|283771164|ref|ZP_06344055.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus H19] gi|294849552|ref|ZP_06790294.1| exodeoxyribonuclease [Staphylococcus aureus A9754] gi|295428583|ref|ZP_06821210.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589943|ref|ZP_06948583.1| exonuclease [Staphylococcus aureus subsp. aureus MN8] gi|13701793|dbj|BAB43086.1| probable ATP-dependent helicase [Staphylococcus aureus subsp. aureus N315] gi|18920545|gb|AAL82285.1| Pol III-like ATP dependent helicase [Staphylococcus phage phi 12] gi|87126978|gb|ABD21492.1| putative exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202846|gb|ABD30656.1| exonuclease family [Staphylococcus aureus subsp. aureus NCTC 8325] gi|104641823|gb|ABF73165.1| probable ATP-dependent helicase [Staphylococcus phage phiNM3] gi|150374934|dbj|BAF68194.1| phage exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|160369033|gb|ABX30004.1| possible exodeoxyribonuclease [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253726519|gb|EES95248.1| DNA polymerase III epsilon subunit family exonuclease [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257839627|gb|EEV64097.1| phage exonuclease [Staphylococcus aureus A9763] gi|257844692|gb|EEV68736.1| phage exonuclease [Staphylococcus aureus A9635] gi|257849264|gb|EEV73245.1| exonuclease family protein [Staphylococcus aureus A9299] gi|257858934|gb|EEV81802.1| phage exonuclease [Staphylococcus aureus A6224] gi|257859949|gb|EEV82787.1| ATP-dependent helicase [Staphylococcus aureus A5948] gi|269941473|emb|CBI49870.1| putative phage exonuclease [Staphylococcus aureus subsp. aureus TW20] gi|282318976|gb|EFB49331.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus D139] gi|282589534|gb|EFB94622.1| exodeoxyribonuclease [Staphylococcus aureus A10102] gi|283459758|gb|EFC06849.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus H19] gi|285817684|gb|ADC38171.1| Pol III-like ATP dependent helicase, phage associated [Staphylococcus phage phiN315] gi|294823689|gb|EFG40116.1| exodeoxyribonuclease [Staphylococcus aureus A9754] gi|295127565|gb|EFG57204.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577071|gb|EFH95785.1| exonuclease [Staphylococcus aureus subsp. aureus MN8] gi|312830370|emb|CBX35212.1| exonuclease family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315196784|gb|EFU27129.1| possible exodeoxyribonuclease [Staphylococcus aureus subsp. aureus CGS01] gi|320143661|gb|EFW35439.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA177] gi|329724440|gb|EGG60950.1| exonuclease [Staphylococcus aureus subsp. aureus 21189] Length = 310 Score = 35.3 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 7/172 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET ++ + E+ AV L+ + + ++ P + + + K+H I ++ + Sbjct: 8 VLDFET--MNEHMNSPCEV-AVSLIKDLSIVKVYSSYINPPNNRYNLKNAKIHKIPEDVI 64 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P + + +++ IAHNA FD+ + + +D+++I Sbjct: 65 LKAPK-YPDIYQEILYLLKESHLIIAHNALFDISVLKNTNNYYDLPVP-NFMYVDSINIF 122 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R H S L +LC Y I H A D LS + I + + Sbjct: 123 RSFHAISSFKLENLCSLY--DIDKEKLHSAKFDVLALSKMLISLAKNNQHYS 172 >gi|330807223|ref|YP_004351685.1| Oligoribonuclease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375331|gb|AEA66681.1| Oligoribonuclease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 180 Score = 35.3 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 15/27 (55%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +N I D+E TGL+ D IIE+ Sbjct: 2 QNPQNLIWIDLEMTGLNPDTDVIIEMA 28 >gi|302755050|ref|XP_002960949.1| hypothetical protein SELMODRAFT_73963 [Selaginella moellendorffii] gi|300171888|gb|EFJ38488.1| hypothetical protein SELMODRAFT_73963 [Selaginella moellendorffii] Length = 397 Score = 35.3 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 63/222 (28%), Gaps = 17/222 (7%) Query: 9 KIVFDIETTG----LDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D E T + IIE +V + + +FQ ++ P N Sbjct: 112 FVVIDFEATCDSTVFFPQ--EIIEFPSVLVAVHSLSVEDSFQTYVKPT--FNPQLTDFCK 167 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 +T + ++ + + + + + + + + + Sbjct: 168 RLTGIEQTQVDNGMALAEALVKHDKWLEDKGVKSKRFGVITWTDWDCKVMLDFECRLKGL 227 Query: 124 IDTLSIARRKHPSSRNDLNS-------LCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + S ++ +H L D+ + + ++++ Sbjct: 228 TKPSYFNKWINLKSCFQEKFGDKFNLKKAVQHAGLQWQGREHCGLDDAKNTASLAMELVR 287 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 G QI F + R + + LK+ R + Sbjct: 288 RGMQIGFT-QHQSSRKPAITNISSEFMPKLKKILEALPRSSD 328 >gi|70734062|ref|YP_257702.1| oligoribonuclease [Pseudomonas fluorescens Pf-5] gi|85542915|sp|Q4KJ81|ORN_PSEF5 RecName: Full=Oligoribonuclease gi|68348361|gb|AAY95967.1| oligoribonuclease [Pseudomonas fluorescens Pf-5] Length = 180 Score = 35.3 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 15/27 (55%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +N I D+E TGL+ D IIE+ Sbjct: 2 QNPQNLIWIDLEMTGLNPDTDVIIEMA 28 >gi|238909183|ref|YP_002939650.1| DNA polymerase I [Eubacterium eligens ATCC 27750] gi|238873420|gb|ACR73129.1| DNA polymerase I [Eubacterium eligens ATCC 27750] Length = 724 Score = 35.3 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 48/161 (29%), Gaps = 17/161 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGLD + + P+ + ++ + Sbjct: 86 VLDVETTGLD-------------VYNDILVGI---CLYNPDLPSF-YVPFNHTDLQNKRV 128 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + + + + + + + I HN KFD + + + + + I + Sbjct: 129 EGQMTEEECKAVMLPYLANGSLKCINHNIKFDDKVVTFQWGQRIANVWWDTNIAGWVLNE 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 KH + G + +++ D++ Sbjct: 189 NEKHGLKPMYNKYILNGEGSDEDFGDLFEGIPCNYIPIDIF 229 >gi|163842028|ref|YP_001626433.1| oligoribonuclease [Renibacterium salmoninarum ATCC 33209] gi|162955504|gb|ABY25019.1| oligoribonuclease [Renibacterium salmoninarum ATCC 33209] Length = 215 Score = 35.3 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYS--KTNRTFQVFLCPN 51 R + D E TGLD + D +IE+ AV + D + V + P+ Sbjct: 7 RIVWIDCEMTGLDLEADALIEV-AVLITDSELNILDDGVDVVIKPD 51 >gi|15600144|ref|NP_253638.1| oligoribonuclease [Pseudomonas aeruginosa PAO1] gi|107104050|ref|ZP_01367968.1| hypothetical protein PaerPA_01005123 [Pseudomonas aeruginosa PACS2] gi|116053100|ref|YP_793419.1| oligoribonuclease [Pseudomonas aeruginosa UCBPP-PA14] gi|218894046|ref|YP_002442915.1| oligoribonuclease [Pseudomonas aeruginosa LESB58] gi|254238334|ref|ZP_04931657.1| oligoribonuclease [Pseudomonas aeruginosa C3719] gi|254244161|ref|ZP_04937483.1| oligoribonuclease [Pseudomonas aeruginosa 2192] gi|296391791|ref|ZP_06881266.1| oligoribonuclease [Pseudomonas aeruginosa PAb1] gi|313109953|ref|ZP_07795880.1| oligoribonuclease [Pseudomonas aeruginosa 39016] gi|11386963|sp|P57665|ORN_PSEAE RecName: Full=Oligoribonuclease gi|122256887|sp|Q02F67|ORN_PSEAB RecName: Full=Oligoribonuclease gi|9951232|gb|AAG08336.1|AE004908_2 oligoribonuclease [Pseudomonas aeruginosa PAO1] gi|115588321|gb|ABJ14336.1| oligoribonuclease [Pseudomonas aeruginosa UCBPP-PA14] gi|126170265|gb|EAZ55776.1| oligoribonuclease [Pseudomonas aeruginosa C3719] gi|126197539|gb|EAZ61602.1| oligoribonuclease [Pseudomonas aeruginosa 2192] gi|218774274|emb|CAW30091.1| oligoribonuclease [Pseudomonas aeruginosa LESB58] gi|310882382|gb|EFQ40976.1| oligoribonuclease [Pseudomonas aeruginosa 39016] Length = 180 Score = 35.3 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 12/27 (44%), Positives = 15/27 (55%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +N I D+E TGLD D IIE+ Sbjct: 2 QNPQNLIWIDLEMTGLDPDRDVIIEMA 28 >gi|331088918|ref|ZP_08337827.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406516|gb|EGG86024.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium 3_1_46FAA] Length = 723 Score = 35.3 bits (79), Expect = 7.2, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 49/161 (30%), Gaps = 17/161 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGLD + + P+ ++ + + + Sbjct: 87 VLDVETTGLD-------------IYNDILVGI---CLYNPDL-PSAYVPFNHTDLQNRRV 129 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + + + + + ++ + I HN KFD I + + + I + Sbjct: 130 EGQMTEEECKAVMLPYLANKDLKCINHNIKFDDKMITFNWGQRIANVWWDTNIASWVLNE 189 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 KH + G + +++ +++ Sbjct: 190 NEKHGLKPLYNKYILNGEGSDEDFGDLFEGIPCNYIPIEIF 230 >gi|260551423|ref|ZP_05825623.1| DNA polymerase III [Acinetobacter sp. RUH2624] gi|260405586|gb|EEW99078.1| DNA polymerase III [Acinetobacter sp. RUH2624] Length = 226 Score = 35.3 bits (79), Expect = 7.2, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 68/237 (28%), Gaps = 23/237 (9%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVE--LLDYSKT---NRTFQVFL-CPNGRKNSPEAL 60 M+ I+ D ET + N IEI L + + F F CP A+ Sbjct: 1 MKAIILDTET---NKLNGYPIEIAYAPFSLENGQLLVLKDEVFNRFYSCPEPIDLEAMAV 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 D + E + HN +DV +N I + Sbjct: 58 HNIIEADIEGQPS--------CETFRLPEGVEFIVGHNIDYDVKALNKCGPAIKAKTICT 109 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + + H + + R R H A D + + I ++ Sbjct: 110 LALTRDVWPDLTSHKLAVLYYFVMSNREEARKHLRHAHSARADVYFTGIILIALIERLGI 169 Query: 181 INFGFKTNEDRFFKEEK----KTVPNISLLKRDKPLFT-RITKEELDEH-DKTIQTL 231 + + K L + +P + + KE+LD H K +Q + Sbjct: 170 KDLNSLYLMSEAVRLPKIMTWGKHKGTPLKELPRPYISWLLNKEDLDPHLRKALQNI 226 >gi|218659835|ref|ZP_03515765.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli IE4771] Length = 77 Score = 35.3 bits (79), Expect = 7.3, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 3/79 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I D ET + + +G + + T R + + P + S + +HGI Sbjct: 1 MKTIAIDFET--ANEQRGSACSVGLAWIEEGRVT-RVEERLIRPREMRFSGMNIAIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWD 85 E ++D P F + EF D Sbjct: 58 PEDVEDAPEFPEVTDEFHD 76 >gi|153802855|ref|ZP_01957441.1| oligoribonuclease [Vibrio cholerae MZO-3] gi|124121610|gb|EAY40353.1| oligoribonuclease [Vibrio cholerae MZO-3] Length = 156 Score = 35.3 bits (79), Expect = 7.3, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 13/19 (68%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD + +IIE+ Sbjct: 11 IDLEMTGLDPEMHKIIEMA 29 >gi|254465457|ref|ZP_05078868.1| exonuclease superfamily [Rhodobacterales bacterium Y4I] gi|206686365|gb|EDZ46847.1| exonuclease superfamily [Rhodobacterales bacterium Y4I] Length = 169 Score = 35.3 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 3/52 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M+ + D E + L + I E+G ++ + ++ + P+ E Sbjct: 1 MQPVFIDFEASSLSPASWPI-EVGLAKIDNDEIVVKS--RLIRPHDSWAMSE 49 >gi|253681455|ref|ZP_04862252.1| possible elongation subunit of DNA-dependent DNA polymerase [Clostridium botulinum D str. 1873] gi|253561167|gb|EES90619.1| possible elongation subunit of DNA-dependent DNA polymerase [Clostridium botulinum D str. 1873] Length = 265 Score = 35.3 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 2/89 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEI--GAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 I FDIETTG D + +I I G + + + F L + + Sbjct: 24 NIIFFDIETTGFDKEKASVILISGGWFDENNKFIIKQYFAESLDEEVQLLESFKKDISKF 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEW 94 + +F F + N + Sbjct: 84 HTWCSYNGKAFDEPFIKKRMDINNIDFIP 112 >gi|169342705|ref|ZP_02863746.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens C str. JGS1495] gi|169299211|gb|EDS81281.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens C str. JGS1495] Length = 204 Score = 35.3 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 4/129 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + FD ETTG+ + I ++ + + +K +T + + PEA ++HG + Sbjct: 1 MKLLFFDTETTGVKPGS--ICQLSYILVDTSTKPQKTIGKNIFFTVDEMEPEAERIHGFS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWI--AHNAKFDVGFINAELQRINKDPLDPSRII 124 E L + + DF N+ HN +FD+ F+ EL + + + Sbjct: 59 LEKLYELSEGMHFEDLYADFINDFLEADFIIGHNVQFDIKFLKHELLGLGEFFEPNNVFC 118 Query: 125 DTLSIARRK 133 Sbjct: 119 TMKYYKDIC 127 >gi|162457127|ref|YP_001619494.1| hypothetical protein sce8842 [Sorangium cellulosum 'So ce 56'] gi|161167709|emb|CAN99014.1| Hypothetical protein T07A9.5a [Sorangium cellulosum 'So ce 56'] Length = 214 Score = 35.3 bits (79), Expect = 7.5, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 6/52 (11%) Query: 9 KIVFDIETT-----GLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRK 54 +V D+E T IIE+GAV + + Q F+ P Sbjct: 7 YLVIDLEATCSDDPSFPRDEMEIIEVGAVLVDAGTLRPAAELQCFVRPIRHP 58 >gi|108800606|ref|YP_640803.1| oligoribonuclease [Mycobacterium sp. MCS] gi|119869745|ref|YP_939697.1| oligoribonuclease [Mycobacterium sp. KMS] gi|126436222|ref|YP_001071913.1| oligoribonuclease [Mycobacterium sp. JLS] gi|122976715|sp|Q1B5T7|ORN_MYCSS RecName: Full=Oligoribonuclease gi|166216269|sp|A3Q2P5|ORN_MYCSJ RecName: Full=Oligoribonuclease gi|166216270|sp|A1UJ99|ORN_MYCSK RecName: Full=Oligoribonuclease gi|108771025|gb|ABG09747.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium sp. MCS] gi|119695834|gb|ABL92907.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium sp. KMS] gi|126236022|gb|ABN99422.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium sp. JLS] Length = 215 Score = 35.3 bits (79), Expect = 7.5, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%) Query: 7 MR-KIV-FDIETTGLDSKNDRIIEIGAV 32 MR ++V D E TGLD ++D +IEI + Sbjct: 1 MRDELVWIDCEMTGLDLRSDLLIEIAVL 28 >gi|18310648|ref|NP_562582.1| hypothetical protein CPE1666 [Clostridium perfringens str. 13] gi|110800096|ref|YP_696353.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens ATCC 13124] gi|168211446|ref|ZP_02637071.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens B str. ATCC 3626] gi|168214501|ref|ZP_02640126.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens CPE str. F4969] gi|168216953|ref|ZP_02642578.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens NCTC 8239] gi|182626374|ref|ZP_02954128.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens D str. JGS1721] gi|18145329|dbj|BAB81372.1| hypothetical protein [Clostridium perfringens str. 13] gi|110674743|gb|ABG83730.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens ATCC 13124] gi|170710592|gb|EDT22774.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens B str. ATCC 3626] gi|170714024|gb|EDT26206.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens CPE str. F4969] gi|177908325|gb|EDT70873.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens D str. JGS1721] gi|182380871|gb|EDT78350.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens NCTC 8239] Length = 204 Score = 35.3 bits (79), Expect = 7.5, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 4/129 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + FD ETTG+ + I ++ + + +K +T + + PEA ++HG + Sbjct: 1 MKLLFFDTETTGVKPGS--ICQLSYILVDTSTKPQKTIGKNIFFTVDEMEPEAERIHGFS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWI--AHNAKFDVGFINAELQRINKDPLDPSRII 124 E L + + DF N+ HN +FD+ F+ EL + + + Sbjct: 59 LEKLYELSEGMYFEDLYADFINDFLEADFIIGHNVQFDIKFLKHELLGLGEFFEPNNVFC 118 Query: 125 DTLSIARRK 133 Sbjct: 119 TMKYYKDIC 127 >gi|163942626|ref|YP_001647510.1| sporulation inhibitor KapD [Bacillus weihenstephanensis KBAB4] gi|229014099|ref|ZP_04171221.1| Sporulation inhibitor KapD [Bacillus mycoides DSM 2048] gi|229135740|ref|ZP_04264512.1| Sporulation inhibitor KapD [Bacillus cereus BDRD-ST196] gi|163864823|gb|ABY45882.1| Exonuclease RNase T and DNA polymerase III [Bacillus weihenstephanensis KBAB4] gi|228647706|gb|EEL03769.1| Sporulation inhibitor KapD [Bacillus cereus BDRD-ST196] gi|228747207|gb|EEL97088.1| Sporulation inhibitor KapD [Bacillus mycoides DSM 2048] Length = 207 Score = 35.3 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 16/183 (8%) Query: 8 RKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SP 57 R + D E T G + IIE+G V ++ K T+ + P + + Sbjct: 5 RFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSSHIRPKTFPSLTD 60 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 K GI E + SF + + ++ + + + P Sbjct: 61 RCKKFLGIKQEVVDKGISFHELVEKLAEYEKSGKPTIVTWGNMDMKVLKHNCEMAGVEFP 120 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +L + ++ L + YG KH LD + + K++ Sbjct: 121 FFGQCRDLSLEYKKFFGERNQTGLWKAIEAYGKA--GTGKHHCALDDAMTTYNIFKLVEK 178 Query: 178 GSQ 180 + Sbjct: 179 DKE 181 >gi|195392333|ref|XP_002054812.1| GJ24646 [Drosophila virilis] gi|194152898|gb|EDW68332.1| GJ24646 [Drosophila virilis] Length = 187 Score = 35.3 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 1/56 (1%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEALKLHGITD 67 D+E TGL D+I+E+ + F + + + + Sbjct: 18 DLEMTGLSIDKDQILEVACIITDKQLNIKAECLCFAIRHPPQVYNNMNEWCIKHHN 73 >gi|315656346|ref|ZP_07909235.1| oligoribonuclease [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492905|gb|EFU82507.1| oligoribonuclease [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 198 Score = 35.3 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCP 50 D E TGLD D +IE+ + + + + + P Sbjct: 4 IDCEMTGLDLHVDELIEVAVIVTDAELNPLDSGIDLLIKP 43 >gi|327265893|ref|XP_003217742.1| PREDICTED: three prime repair exonuclease 1-like [Anolis carolinensis] Length = 329 Score = 35.3 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 8/127 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+E TGL +I E+ + T R + P+ + L + Sbjct: 15 FVFMDLEATGLPPSRPKIAEMCLFAV--------TRHALENLQYRNSHPKPIPLFPRVVD 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + F+ E + N K + P + + Sbjct: 67 KLCVCINPDKPFTPMASSITGLTNEMFSWNKKQKFNLDILHMMTAFFIRQHPPICLVAHN 126 Query: 129 IARRKHP 135 P Sbjct: 127 GCSYDFP 133 >gi|328717754|ref|XP_001946025.2| PREDICTED: ERI1 exoribonuclease 3-like [Acyrthosiphon pisum] gi|239793057|dbj|BAH72792.1| ACYPI003543 [Acyrthosiphon pisum] Length = 248 Score = 35.3 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 14/137 (10%) Query: 8 RKIVFDIETT---G---LDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKN- 55 + V D E T G L + IIE + + + F ++ P Sbjct: 48 KFFVLDFEATCDNGAHLLKPQ--EIIEFPCILVKFNMAKGGFEVVSIFHSYVKPIIHTVL 105 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 + +L G+T + + + P F +F F ++ N+ + G + I + Sbjct: 106 TEYCTQLTGVTQDMVSNSPPFDDVFFNFCNWHNDHTNMGKEKSIIVTSGNWDIGNMFIEQ 165 Query: 116 DPLDPSRIIDTLSIARR 132 L PS I + Sbjct: 166 CKLFPSTIKIPEFMCTW 182 >gi|257453441|ref|ZP_05618736.1| oligoribonuclease Orn [Enhydrobacter aerosaccus SK60] gi|257449193|gb|EEV24141.1| oligoribonuclease Orn [Enhydrobacter aerosaccus SK60] Length = 183 Score = 35.3 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGLD+ +D IIEI Sbjct: 11 IDLEMTGLDTLSDTIIEIA 29 >gi|332978247|gb|EGK14977.1| oligoribonuclease [Psychrobacter sp. 1501(2011)] Length = 193 Score = 35.3 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 55/178 (30%), Gaps = 11/178 (6%) Query: 12 FDIETTGLDSKNDRIIEIGAV---ELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITD 67 D+E TGLD+ ND IIE+ + E L+ F + + K HG + Sbjct: 21 IDLEMTGLDTMNDDIIEVATIVTDEDLNILAEGPVFAIKVSDQKLNGMDDWNTKQHGQSG 80 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + S ++ + N D G I +D +R + L Sbjct: 81 LIDRVRRSTVTLEQAEKETIEF-------LNKWVDEGKSPMCGNSICQDRRFLARQMPQL 133 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + + LC R+ I + + I+ + Q F Sbjct: 134 ERFFHYRNLDVSSIKELCYRWRPDILKGVEKTGSHLAMDDIRDSIRELKHYRQHFFKL 191 >gi|311069646|ref|YP_003974569.1| sporulation inhibitor KapD [Bacillus atrophaeus 1942] gi|310870163|gb|ADP33638.1| sporulation inhibitor KapD [Bacillus atrophaeus 1942] Length = 205 Score = 35.3 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 39/147 (26%), Gaps = 1/147 (0%) Query: 25 RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFW 84 IIE G V+ +D + TF ++ P + K + D+ F Sbjct: 28 EIIEAGIVKSVDDAVV-ETFSSYIKPKKFPKLTKRCKSFLKITQKDVDEGMKFEEFIRKL 86 Query: 85 DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSL 144 + + Q I D+ + + + D + Sbjct: 87 NELDPQKDCTIVTWGNMDMKVLKQNCMFNHIPFPFKGEMRDLSLEYKNFFGDRTLTGLWK 146 Query: 145 CKRYGITISHRSKHGALLDSHLLSDVY 171 + H AL D+ ++ Sbjct: 147 AAEEYGDEGTGTHHKALDDALTTHKLF 173 >gi|299769724|ref|YP_003731750.1| DNA polymerase III, epsilon subunit [Acinetobacter sp. DR1] gi|298699812|gb|ADI90377.1| DNA polymerase III, epsilon subunit [Acinetobacter sp. DR1] Length = 226 Score = 35.3 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 67/237 (28%), Gaps = 23/237 (9%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKT---NRTFQVFL-CPNGRKNSPEAL 60 M+ I+ D ET + N IEI + + + + F F CP A+ Sbjct: 1 MKAIILDTET---NKLNGYPIEIAYASIGIENGQLLVQKDEVFNRFYSCPEPIDLEAMAV 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 D + E + HN +D+ +N I + Sbjct: 58 HNIIEADIEGQPS--------CETFRLPEGVEFIVGHNIDYDIKALNKCGPAIKAKTICT 109 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + + H + + R R H A D + + I ++ Sbjct: 110 LALARDVWPDLPSHKLAVLYYFVMSNREEARKHLRHAHSARADIYFTGIILIALIERLGI 169 Query: 181 INFGFKTNEDRFFKEEK----KTVPNISLLKRDKPLFT-RITKEELDEH-DKTIQTL 231 + + K L P T + KE+LD H K +Q + Sbjct: 170 KDLNSLFLMSEAVRLPKIMSWGKHKGTPLKDLPHPYITWLLNKEDLDPHLRKALQNI 226 >gi|17548214|ref|NP_508415.1| Cell-death-Related Nuclease family member (crn-4) [Caenorhabditis elegans] gi|2496805|sp|Q10905|CRN4_CAEEL RecName: Full=Cell death-related nuclease 4; Flags: Precursor gi|1086852|gb|AAA82440.1| Hypothetical protein AH9.2 [Caenorhabditis elegans] gi|31747257|gb|AAP57300.1| cell death-related nuclease 4 [Caenorhabditis elegans] Length = 298 Score = 35.3 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 54/187 (28%), Gaps = 13/187 (6%) Query: 11 VFDIETTGLDSKND---RIIEIGAVELL---DYSKTNRTFQVFLCPN-GRKNSPEALKLH 63 + D ETT + D +I+ V D + + +F ++ P R + + Sbjct: 13 ILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFT 72 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINKDPL 118 GI + +F ++ +F + ++ + + +++ N Sbjct: 73 GIPQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMP 132 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + I+ I + S G + + D + Sbjct: 133 AFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATIL 192 Query: 178 GSQINFG 184 IN G Sbjct: 193 QRMINMG 199 >gi|150015369|ref|YP_001307623.1| exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] gi|149901834|gb|ABR32667.1| Exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] Length = 303 Score = 35.3 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 25/67 (37%) Query: 7 MRKIVFDIE-------TTGLDSKND---------------RIIEIGAVELLDYSKTNRTF 44 M I+ D+E T + + D IIEIGAV++ Y K + Sbjct: 1 MGYIIIDLEFNNLKNIT---NYQKDFFEKYGEFDSISLENEIIEIGAVKVDKYMKPIKEI 57 Query: 45 QVFLCPN 51 + ++ P Sbjct: 58 REYIKPK 64 >gi|313201249|ref|YP_004039907.1| exonuclease rnase t and DNA polymerase III [Methylovorus sp. MP688] gi|312440565|gb|ADQ84671.1| Exonuclease RNase T and DNA polymerase III [Methylovorus sp. MP688] Length = 182 Score = 35.3 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E +GL +DRI+E+ AV Sbjct: 11 LDMEMSGLLPDSDRILELAAV 31 >gi|227514397|ref|ZP_03944446.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 14931] gi|227087263|gb|EEI22575.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 14931] Length = 361 Score = 35.3 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 56/196 (28%), Gaps = 3/196 (1%) Query: 12 FDIE-TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDEF 69 D+E T ++ +EIG V+ + K + F F+ + + + Sbjct: 19 LDLEFATHKKTREHLPLEIGVVKYQNGRKVGKQFHRFVYWADAEADDILRGMDYANVTYK 78 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 K F + + N D+ + ++ +D + Sbjct: 79 TYKKQGQWDKIVADLLNFIDFSLPIGGWNVHGDLQVLLEAIKNHGGPLVDEKAVCCFEVD 138 Query: 130 ARRKHPSSRNDLNSLCKRYG-ITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + SL + + H AL D L + VY ++ ++ Sbjct: 139 ELVSWLGELPNKPSLRGVGRLLGFDVSNMHHALSDVLLTAQVYDYLVALPEIASWKKAPT 198 Query: 189 EDRFFKEEKKTVPNIS 204 + KE +T Sbjct: 199 NTKSTKEAGRTKATKK 214 >gi|317128127|ref|YP_004094409.1| hypothetical protein Bcell_1415 [Bacillus cellulosilyticus DSM 2522] gi|315473075|gb|ADU29678.1| hypothetical protein Bcell_1415 [Bacillus cellulosilyticus DSM 2522] Length = 256 Score = 35.3 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 41/152 (26%), Gaps = 7/152 (4%) Query: 25 RIIEIGAVE---LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFS 81 + EI AVE + D + ++ P + + H P+F+ + Sbjct: 23 ELTEIVAVEVQIIDDIFIKGSKYHSYIRPVYQHWKKKKGVQHYSNW---WLAPTFNDVMK 79 Query: 82 EFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND 140 F ++++ N W+ N K + + + + Sbjct: 80 TFQNWYSAYKNYPWVVSNRKVISILDENINKHDCHFYWPKEIVYVNDIYNHMEKDIIAHK 139 Query: 141 LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + +L L +I Sbjct: 140 KQKEHSGGHQSHCEEKVNQLILSFMKLRKEFI 171 >gi|195054679|ref|XP_001994252.1| GH11306 [Drosophila grimshawi] gi|193896122|gb|EDV94988.1| GH11306 [Drosophila grimshawi] Length = 187 Score = 35.3 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+E TGLD D+I+E+ + + P+ P+ + + Sbjct: 18 DLEMTGLDINTDQILELSCIITDKHLNIKSE-----GPSFAIRHPQHVYDNMNEWCMKHH 72 Query: 73 K 73 Sbjct: 73 Y 73 >gi|253999147|ref|YP_003051210.1| oligoribonuclease [Methylovorus sp. SIP3-4] gi|253985826|gb|ACT50683.1| Exonuclease RNase T and DNA polymerase III [Methylovorus sp. SIP3-4] Length = 182 Score = 35.3 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E +GL +DRI+E+ AV Sbjct: 11 LDMEMSGLLPDSDRILELAAV 31 >gi|184201097|ref|YP_001855304.1| oligoribonuclease [Kocuria rhizophila DC2201] gi|183581327|dbj|BAG29798.1| oligoribonuclease [Kocuria rhizophila DC2201] Length = 199 Score = 35.3 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 39/148 (26%), Gaps = 10/148 (6%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEF- 69 D E TGL D +IE+ A+ D + V + P + + + + Sbjct: 3 IDCEMTGLSLSEDALIEVAALVTDDELNVLGSGVDVVIKPPQQALEQMNDFVRTMHENSG 62 Query: 70 --------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + + + + ++ + + N+ D L Sbjct: 63 LLPELERGMDMAQAQAMVLDYIREWVPDAGKAPLGGNSVGTDKTFLTRDMPELVDHLHYR 122 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYG 149 I + + R + K Sbjct: 123 VIDVSTIKELARRWYPRAYFQAPEKTGN 150 >gi|38234384|ref|NP_940151.1| oligoribonuclease [Corynebacterium diphtheriae NCTC 13129] gi|48428192|sp|P61650|ORN_CORDI RecName: Full=Oligoribonuclease gi|38200647|emb|CAE50343.1| oligoribonuclease [Corynebacterium diphtheriae] Length = 210 Score = 35.3 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNR 42 R + D+E TGL+ I+E+ A+ D + Sbjct: 11 RLVWIDLEMTGLELDRHVIVEVAALITDADLNIIGE 46 >gi|150015899|ref|YP_001308153.1| exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] gi|149902364|gb|ABR33197.1| Exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] Length = 209 Score = 35.3 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 9/168 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQVFLCPNGRKNSPEALKL 62 M+ + FD ETT + + I ++ + + T + F + + S + + Sbjct: 1 MKLLFFDTETTSIKPGS--ICQLSYITVDASTKPQITTGKNFFFTV--DEMDPSAKEIHG 56 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPS 121 + + + + I HN FDV F+ E L Sbjct: 57 FSLEKLYELSDGQYFEDLVPEFLEDFMTADFLIGHNVNFDVRFLKHELLSLGEDFYPKNV 116 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 K P + ++ + I + S + + S L + Sbjct: 117 FCTMAYYRDICKIPKANGEIKNPKLSEVIDWLNISSNQIVETSEKLFE 164 >gi|313157971|gb|EFR57377.1| exonuclease [Alistipes sp. HGB5] Length = 164 Score = 35.3 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 3/134 (2%) Query: 42 RTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 +F + P S +HG+T + + P F +++ + +AHN+ F Sbjct: 34 DSFYSLIRPRPNFYSRFTTAIHGLTYDDTAEAPDFETVWKQIAPRIEG--LPLVAHNSPF 91 Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 D G + A + + R N + H AL Sbjct: 92 DEGCLRAVFELYGMPYPGYRFYCTCRASRRTFGTQLPNHQLHTVSAA-CGFDLANHHHAL 150 Query: 162 LDSHLLSDVYIKMM 175 D+ + + +K++ Sbjct: 151 ADAEACARIALKIL 164 >gi|323336602|gb|EGA77868.1| Rex2p [Saccharomyces cerevisiae Vin13] Length = 208 Score = 35.3 bits (79), Expect = 8.5, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 8/58 (13%) Query: 17 TGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 TGLD NDRIIEI + + + + ++ + Sbjct: 2 TGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMBKMNEWCIEHH 59 >gi|229588067|ref|YP_002870186.1| oligoribonuclease [Pseudomonas fluorescens SBW25] gi|312958644|ref|ZP_07773164.1| exonuclease [Pseudomonas fluorescens WH6] gi|229359933|emb|CAY46787.1| oligoribonuclease [Pseudomonas fluorescens SBW25] gi|311287187|gb|EFQ65748.1| exonuclease [Pseudomonas fluorescens WH6] Length = 180 Score = 35.3 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 12/19 (63%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL+ D IIE+ Sbjct: 10 IDLEMTGLNPDTDVIIEMA 28 >gi|148244280|ref|YP_001218974.1| oligoribonuclease [Candidatus Vesicomyosocius okutanii HA] gi|146326107|dbj|BAF61250.1| oligoribonuclease [Candidatus Vesicomyosocius okutanii HA] Length = 181 Score = 35.3 bits (79), Expect = 8.7, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 12/19 (63%) Query: 12 FDIETTGLDSKNDRIIEIG 30 D+E TGL + D IIEI Sbjct: 11 IDLEMTGLTPEKDVIIEIA 29 >gi|145478451|ref|XP_001425248.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124392317|emb|CAK57850.1| unnamed protein product [Paramecium tetraurelia] Length = 1241 Score = 35.3 bits (79), Expect = 8.7, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 58/218 (26%), Gaps = 12/218 (5%) Query: 32 VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91 + + T + R N + +P + + Sbjct: 988 ILVEKAILILETIHSQIPQEYRSN---ITYDIKLNYIERNMRPYIDYDYYISRILTGYEI 1044 Query: 92 AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT 151 + + +V + + ++ + + S R +T Sbjct: 1045 IKKMHMKHYQEVFNSADMDLDNMMEYQEFKKLYYYFEVNQGNQTSISVMEREFLSRCDLT 1104 Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK-RDK 210 ++ + D L + + NF +E K + N + +K R + Sbjct: 1105 ANNEGEKAMSFDRFLTFSIEQNLFSEEKFTNFANSVDEQDPIKTLEDLYRNWNDVKLRLE 1164 Query: 211 PLFTRITKEELDEHDKTIQTLGK--------NAIWDRY 240 +EE++ + I+ L K +IW Y Sbjct: 1165 NRVQYAVEEEIEYYLSVIKKLDKALTCEDKRQSIWISY 1202 >gi|118602163|ref|YP_903378.1| oligoribonuclease [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166216583|sp|A1AVF0|ORN_RUTMC RecName: Full=Oligoribonuclease gi|118567102|gb|ABL01907.1| Exonuclease, RNase T and DNA polymerase III [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 180 Score = 35.3 bits (79), Expect = 8.7, Method: Composition-based stats. Identities = 12/27 (44%), Positives = 14/27 (51%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 K I D+E TGL + D IIEI Sbjct: 2 NKKTNLIWIDLEMTGLIPEKDVIIEIA 28 >gi|315655740|ref|ZP_07908638.1| oligoribonuclease [Mobiluncus curtisii ATCC 51333] gi|315489804|gb|EFU79431.1| oligoribonuclease [Mobiluncus curtisii ATCC 51333] Length = 212 Score = 35.3 bits (79), Expect = 8.8, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCP 50 D E TGLD D +IE+ + + + + P Sbjct: 18 IDCEMTGLDLHVDELIEVAVIVTDAELNPLDSGIDLLIKP 57 >gi|300814058|ref|ZP_07094341.1| hypothetical protein HMPREF9131_1233 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511715|gb|EFK38932.1| hypothetical protein HMPREF9131_1233 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 299 Score = 35.3 bits (79), Expect = 8.8, Method: Composition-based stats. Identities = 13/20 (65%), Positives = 15/20 (75%) Query: 14 IETTGLDSKNDRIIEIGAVE 33 IETTGL KND II IG ++ Sbjct: 19 IETTGLSIKNDVIIAIGIIK 38 >gi|331083823|ref|ZP_08332932.1| hypothetical protein HMPREF0992_01856 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403248|gb|EGG82808.1| hypothetical protein HMPREF0992_01856 [Lachnospiraceae bacterium 6_1_63FAA] Length = 374 Score = 34.9 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 5/175 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCPNGRKNSPEALKLHGITDE 68 FDIETTGL K + IG + + +Q FL + AL Sbjct: 31 FFDIETTGLSPKTSHVFLIGLISF---QPDTKEWQLIQFLQEQDNEEEERALLETFSAFA 87 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + S + + + N ++ + + T Sbjct: 88 KSRTQLIHFNGSSFDIPYLVSRYEKHQLPNPFSHKSSLDLYREFLRMPAFFRQMPNHTQK 147 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +R DL S + S+ + LL Y ++ S + Sbjct: 148 AFEELTSYTRKDLLSGKEMIKFYHSYTKSPSKEKEDLLLQHNYDDLVGMLSVLPL 202 >gi|297538700|ref|YP_003674469.1| Exonuclease RNase T and DNA polymerase III [Methylotenera sp. 301] gi|297258047|gb|ADI29892.1| Exonuclease RNase T and DNA polymerase III [Methylotenera sp. 301] Length = 186 Score = 34.9 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 12 FDIETTGLDSKNDRIIEIGAV 32 D+E +GL +DRI+E+ AV Sbjct: 16 LDMEMSGLLPDSDRILELAAV 36 >gi|66822265|ref|XP_644487.1| RNA exonuclease 2 [Dictyostelium discoideum AX4] gi|66822817|ref|XP_644763.1| RNA exonuclease 2 [Dictyostelium discoideum AX4] gi|122057700|sp|Q556Y2|ORN_DICDI RecName: Full=Probable oligoribonuclease; AltName: Full=RNA exonuclease 2 homolog gi|60472610|gb|EAL70561.1| RNA exonuclease 2 [Dictyostelium discoideum AX4] gi|60472946|gb|EAL70895.1| RNA exonuclease 2 [Dictyostelium discoideum AX4] Length = 190 Score = 34.9 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 18/32 (56%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 +I + R + D+E TGLD D I+E+ V Sbjct: 11 VINERSKRMVWVDLEMTGLDISKDVILEMAIV 42 >gi|296087843|emb|CBI35099.3| unnamed protein product [Vitis vinifera] Length = 520 Score = 34.9 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 17/221 (7%) Query: 9 KIVFDIETT---GLDSKNDRIIEIGAVELLDYSKTNR---TFQVFLCPNGR------KNS 56 +V D E T G + IIE +V + S T + FQ ++ P Sbjct: 246 FVVIDFEATCDKGKNPHPQEIIEFPSVIVS--SVTGQLEACFQTYVRPTCNQILSDFCKD 303 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH-NAKFDVGFINAELQRINK 115 ++ + + N + N V + + + Sbjct: 304 LTGIQQIQVDRGVTLSEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLESECRFKKIR 363 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P +R I+ R +L + G+ R+ H L D+ + + +M Sbjct: 364 KPPYFNRWINLKVPFREVFGGVWCNLKEAVEMAGLAWQGRA-HCGLDDAKNTARLLAFLM 422 Query: 176 VGGSQINFGFKTN-EDRFFKEEKKTVPNISLLKRDKPLFTR 215 G + + + E K P +S P R Sbjct: 423 HRGFKFSITNSLMWQATDHPESWKQSPELSSFPEYHPQKLR 463 >gi|251780447|ref|ZP_04823367.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084762|gb|EES50652.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 204 Score = 34.9 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 8/134 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQVFLCPNGRKNSPEALKL 62 M+ + FD ETT + + I ++ + + T + F + + S + + Sbjct: 1 MKLLFFDTETTSIKPGS--ICQLSYITVDASSKPQITTGKNFFFTV--DEMNPSAQEIHG 56 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + + + + + I HN FD+ F+ EL + +D L Sbjct: 57 FSLEKLYELSDGQYFEDLVPEFFKDFIEADFLIGHNVNFDIRFLKHELSLLGEDFLPKHS 116 Query: 123 IIDTLSIARRKHPS 136 + Sbjct: 117 FCTMIYYKDICKMP 130 >gi|225463988|ref|XP_002263189.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 415 Score = 34.9 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 17/221 (7%) Query: 9 KIVFDIETT---GLDSKNDRIIEIGAVELLDYSKTNR---TFQVFLCPNGR------KNS 56 +V D E T G + IIE +V + S T + FQ ++ P Sbjct: 141 FVVIDFEATCDKGKNPHPQEIIEFPSVIVS--SVTGQLEACFQTYVRPTCNQILSDFCKD 198 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH-NAKFDVGFINAELQRINK 115 ++ + + N + N V + + + Sbjct: 199 LTGIQQIQVDRGVTLSEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLESECRFKKIR 258 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P +R I+ R +L + G+ R+ H L D+ + + +M Sbjct: 259 KPPYFNRWINLKVPFREVFGGVWCNLKEAVEMAGLAWQGRA-HCGLDDAKNTARLLAFLM 317 Query: 176 VGGSQINFGFKTN-EDRFFKEEKKTVPNISLLKRDKPLFTR 215 G + + + E K P +S P R Sbjct: 318 HRGFKFSITNSLMWQATDHPESWKQSPELSSFPEYHPQKLR 358 >gi|213618910|ref|ZP_03372736.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 218 Score = 34.9 bits (78), Expect = 9.1, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 14/152 (9%) Query: 26 IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85 I+EI +V+++D + + P+ R +P+A+ +H IT+ + DKP + Sbjct: 2 IVEIASVDVIDGNIV-NPMSHLIRPD-RPITPQAMAIHRITEAMVADKPWIEDVI----- 54 Query: 86 FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLC 145 + ++AHNA FD + + P + + S L Sbjct: 55 PLYYGSEWYVAHNASFDRRVLP-------ELPGEWICTMKLSRRLWPGIKYSNMALYKSR 107 Query: 146 KRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 K T H AL D ++ + + I +M Sbjct: 108 KLSVQTPPGLHHHRALYDCYITAALLIDIMRT 139 >gi|46125619|ref|XP_387363.1| hypothetical protein FG07187.1 [Gibberella zeae PH-1] Length = 615 Score = 34.9 bits (78), Expect = 9.2, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42 + +V D+E +D++ EI VE + Sbjct: 527 KLVVLDVE---FSPVSDQVWEIAVVEFVSGKVVIN 558 >gi|42782602|ref|NP_979849.1| exonuclease [Bacillus cereus ATCC 10987] gi|42738528|gb|AAS42457.1| exonuclease family protein [Bacillus cereus ATCC 10987] Length = 281 Score = 34.9 bits (78), Expect = 9.3, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 67/219 (30%), Gaps = 13/219 (5%) Query: 4 KNKMRKIVFDIETTGLDSKND---RIIEIGAVELLD--YSKTNRTFQVFLCPNGR--KNS 56 KN IVFDIE K+D I++IGAV++ F + P R +++ Sbjct: 2 KNTTHFIVFDIERNFRPYKSDDPSEIVDIGAVKIEASTMKVIGE-FSELVKPGARLTRHT 60 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + + ++ P F +F + + + Sbjct: 61 TKLTGITKKDLMNVEKFPQIIERFIQFIGEDSIFVTWGKEDYRFLVHDCTLHGVDCPCME 120 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH---GALLDSHLLSDVYIK 173 + + A + L S ++ G+T + A +++L Y + Sbjct: 121 KERRIDLQKFVFQAYEELFEHTPSLQSAVEQLGLTWEGKQHRALADAENTANILLKAYSE 180 Query: 174 --MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 + + + ++ KK + + K Sbjct: 181 RDITKRYKRHGELELVENGKLTEKAKKKMRKWVFKEMRK 219 >gi|298345320|ref|YP_003718007.1| exoribonuclease II [Mobiluncus curtisii ATCC 43063] gi|304390877|ref|ZP_07372829.1| oligoribonuclease [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235381|gb|ADI66513.1| exoribonuclease II [Mobiluncus curtisii ATCC 43063] gi|304325760|gb|EFL93006.1| oligoribonuclease [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 212 Score = 34.9 bits (78), Expect = 9.4, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCP 50 D E TGLD D +IE+ + + + + P Sbjct: 18 IDCEMTGLDLHVDELIEVAVIVTDAELNPLDSGIDLLIKP 57 >gi|152967659|ref|YP_001363443.1| oligoribonuclease [Kineococcus radiotolerans SRS30216] gi|151362176|gb|ABS05179.1| Exonuclease RNase T and DNA polymerase III [Kineococcus radiotolerans SRS30216] Length = 206 Score = 34.9 bits (78), Expect = 9.4, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN 51 R + D E TGL D ++E+ + D + V + P Sbjct: 9 RIVWIDCEMTGLSLTEDALVEVAVLVTDADLNVLGDGVDVVIKPP 53 >gi|294626343|ref|ZP_06704945.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665158|ref|ZP_06730459.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599344|gb|EFF43479.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605071|gb|EFF48421.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 481 Score = 34.9 bits (78), Expect = 9.5, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 3/118 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--KNSPEALKLHGI 65 + +D+ET G D + RI + AV F+ P + + Sbjct: 5 FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRMIEEPISFFVQPADDLLPSPYATMVTGIT 64 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 L++ + + FS + + +N+ N Sbjct: 65 PQHALREGVTEAEAFSRIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYEREW 122 >gi|19745746|ref|NP_606882.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS8232] gi|19747886|gb|AAL97381.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes MGAS8232] Length = 833 Score = 34.9 bits (78), Expect = 9.6, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 70/190 (36%), Gaps = 20/190 (10%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGA------VELLDYSKTNRTFQVFLCPNGRK 54 M +K + V D+E TG A + ++ +K +++ + P+ Sbjct: 15 MTQKKLRKYAVVDLEATGAGPN--------ASIIQVGIVIIQGNKIMDSYETDVNPH-ES 65 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 + L GITD+ L P F + + + ++AHN KFD + Sbjct: 66 LDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED--CIFVAHNVKFDANLLA--EALFL 121 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +DT+ +A+ P S R + I H A+ D+ + +++++ Sbjct: 122 EGYELTIPRVDTVELAQLFFPRFEKYNLSHLSRQ-LNIDLAEAHTAIADARATAILFLRL 180 Query: 175 MVGGSQINFG 184 + + Sbjct: 181 LQKIESLPIE 190 >gi|294501668|ref|YP_003565368.1| exonuclease (sporulation inhibitor KapD) [Bacillus megaterium QM B1551] gi|294351605|gb|ADE71934.1| exonuclease (sporulation inhibitor KapD) [Bacillus megaterium QM B1551] Length = 204 Score = 34.9 bits (78), Expect = 9.7, Method: Composition-based stats. Identities = 20/199 (10%), Positives = 52/199 (26%), Gaps = 16/199 (8%) Query: 9 KIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPE 58 + D E T G + IIE+G V + + +R F ++ P K + Sbjct: 7 YLFIDFEFTMPEYKGFPKGFFPE---IIEVGLVFVKNQEIIDR-FSSYVQPTHFTKLTER 62 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 I + + + + + + W + K Sbjct: 63 CKSFLHIEQNQVNEGITLEQLVQRLGMYKHSTIITWGNMDMKVLRQCCQKNKVPFPFAGK 122 Query: 119 DPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + ++ ++ + + + G L+ L + + + Sbjct: 123 EIDLSMEYKRFFGDQNQTGLWKAVQEYGKEGTGKHHCALDDAMTTLNIFKLVEKDKRYLQ 182 Query: 177 GGSQINFGFKTNEDRFFKE 195 G + + + + Sbjct: 183 KPEPTTIGDRIDFSKVLNK 201 >gi|291520945|emb|CBK79238.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Coprococcus catus GD/7] Length = 218 Score = 34.9 bits (78), Expect = 9.8, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 22/142 (15%) Query: 7 MRKIVFDIETTGLDSKNDRI---------------IEIGAVELLDYSKTNRTFQVFLCPN 51 M +V D+E R+ I+IGAV L + K T + ++ P Sbjct: 1 MFYLVIDLEM-------CRVPRDYRNKAYHYAYETIQIGAVLLNEEFKQVGTIREYVHPE 53 Query: 52 GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 P KL GI + +K P D+ ++ + + ++ Sbjct: 54 HGVIDPFIEKLTGIKNSQVKKAPCIGEALVHMIDWIGDREYKVYTWSESDRNQLLHEITA 113 Query: 112 RINKDPLDPSRIIDTLSIARRK 133 + D + +++ + + Sbjct: 114 KQITDESVDAFMMEDRWVDYQM 135 >gi|170723851|ref|YP_001751539.1| oligoribonuclease [Pseudomonas putida W619] gi|169761854|gb|ACA75170.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida W619] Length = 180 Score = 34.9 bits (78), Expect = 9.8, Method: Composition-based stats. Identities = 12/27 (44%), Positives = 16/27 (59%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIG 30 +N I D+E TGLD +D IIE+ Sbjct: 2 QNPQNLIWIDLEMTGLDPDSDVIIEMA 28 >gi|331000795|ref|ZP_08324441.1| oligoribonuclease [Parasutterella excrementihominis YIT 11859] gi|329570323|gb|EGG52056.1| oligoribonuclease [Parasutterella excrementihominis YIT 11859] Length = 204 Score = 34.9 bits (78), Expect = 9.8, Method: Composition-based stats. Identities = 10/20 (50%), Positives = 16/20 (80%) Query: 13 DIETTGLDSKNDRIIEIGAV 32 D+E TGL+ + +RI+E+ AV Sbjct: 35 DLEMTGLEPQINRILEMAAV 54 >gi|329888661|ref|ZP_08267259.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568] gi|328847217|gb|EGF96779.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568] Length = 228 Score = 34.9 bits (78), Expect = 9.8, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 14/27 (51%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS 38 D ETTG++ +IE G +L + Sbjct: 2 IDFETTGMEPPTAEVIEYGWCDLTNDG 28 >gi|260663140|ref|ZP_05864032.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN] gi|260552332|gb|EEX25383.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN] Length = 361 Score = 34.9 bits (78), Expect = 9.8, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 64/197 (32%), Gaps = 5/197 (2%) Query: 12 FDIE-TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP--EALKLHGITDE 68 D+E T ++ +EIG V+ + K + F F+ + + +T + Sbjct: 19 LDLEFATHKKTREHLPLEIGVVKYQNGRKVGKQFHRFVYWADAEADDILRGIDYANVTYK 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 K + + I ++ +F + + N D+ + ++ +D + Sbjct: 79 TYKKQGQWDKIVADLLNFI-DFSLPIGGWNVHGDLQVLLEAIKNHGGPLVDEKAVCCFEV 137 Query: 129 IARRKHPSSRNDLNSLCKRYG-ITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + SL + + H AL D L + VY ++ ++ Sbjct: 138 DELVSWLGELPNKPSLRGVGRLLGFDVSNMHHALSDVLLTAQVYDYLVALPEIASWKKAP 197 Query: 188 NEDRFFKEEKKTVPNIS 204 + KE +T Sbjct: 198 TNTKSTKEAGRTKATKK 214 >gi|89894542|ref|YP_518029.1| sporulation inhibitor KapD [Desulfitobacterium hafniense Y51] gi|89333990|dbj|BAE83585.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 222 Score = 34.9 bits (78), Expect = 9.8, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 47/184 (25%), Gaps = 14/184 (7%) Query: 6 KMRKIVFDIETTGLDSKND---------RIIEIGAVELL-DYSK-TNRTFQVFLCPNGRK 54 KM +V D E IIE+GA L + ++TF F+ P Sbjct: 13 KMDFLVVDFE---FSVPQSYGKPRAWFPEIIEVGATVLDSNGKLALDKTFNAFVKPRFWP 69 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 E + D+ + A +A N + Sbjct: 70 RLAEESYGITGIRQEDVDQGILLEEAIQHLQKLAHPEAYVVAWGDADRKILGNVCEKYGL 129 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 K P ID + H AL D+ + V +M Sbjct: 130 KYPFVWENYIDLAEQYKHYRSLDHLISLKKAIEENSIEQIGILHSALDDAINAAQVMARM 189 Query: 175 MVGG 178 M G Sbjct: 190 MSEG 193 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.310 0.112 0.328 Lambda K H 0.267 0.0347 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,518,002,858 Number of Sequences: 14124377 Number of extensions: 62807823 Number of successful extensions: 227278 Number of sequences better than 10.0: 6879 Number of HSP's better than 10.0 without gapping: 4960 Number of HSP's successfully gapped in prelim test: 1919 Number of HSP's that attempted gapping in prelim test: 218748 Number of HSP's gapped (non-prelim): 7066 length of query: 245 length of database: 4,842,793,630 effective HSP length: 135 effective length of query: 110 effective length of database: 2,936,002,735 effective search space: 322960300850 effective search space used: 322960300850 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 79 (35.3 bits)